BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010405
         (511 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 596

 Score =  744 bits (1920), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/511 (69%), Positives = 422/511 (82%), Gaps = 31/511 (6%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           MV+KNSF  DVFV+NS+I+FYSVCGR+ DARWVFDES +LDV                  
Sbjct: 117 MVIKNSFEMDVFVRNSIIRFYSVCGRLNDARWVFDESSELDV------------------ 158

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
                        VSWNS++ G +R G++ +A  +F++M +R+ +SW ++ISG+AQNG+P
Sbjct: 159 -------------VSWNSMIDGCIRNGNILEALSLFSKMTERNDISWNMMISGYAQNGQP 205

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
           KEALALFREMQ LD EPNSAILVS+LSAC+QLGALD+G WV+ YI KKC+++DSIL AAL
Sbjct: 206 KEALALFREMQMLDQEPNSAILVSVLSACSQLGALDHGCWVHCYIGKKCVRVDSILSAAL 265

Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           IDMYAKCGSIDLAMQ F +   +DVSAYT+AI GLAMNG S EA +LFE MK +GISPD 
Sbjct: 266 IDMYAKCGSIDLAMQAFSTSRKRDVSAYTAAISGLAMNGCSEEALQLFEQMKGEGISPDG 325

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
           +SYIAVL ACSH GWVEKGF+YF SM DVHGI+PELDHYACMVDLLGRAGLLEEAE F+A
Sbjct: 326 VSYIAVLCACSHAGWVEKGFHYFASMSDVHGIRPELDHYACMVDLLGRAGLLEEAEKFVA 385

Query: 301 SMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGEN 360
           SMP+KPDNVIWG LLGACRV+ NAEMGQR+G++L+ESDQNHDGRYILLSNIY E++KGE+
Sbjct: 386 SMPIKPDNVIWGALLGACRVYGNAEMGQRVGSLLVESDQNHDGRYILLSNIYAESMKGED 445

Query: 361 AEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGY 420
           AE+VRKTMR+RK+ R PGCSLIE+ G VHEF +GDRSHEKT+EIY  WEEIVK+IK +GY
Sbjct: 446 AEQVRKTMRRRKVDRVPGCSLIEVAGFVHEFFSGDRSHEKTEEIYLMWEEIVKEIKKFGY 505

Query: 421 NVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKL 480
             ETR+V+FD+EEEEKE VIG+HSEKLA+AFG + TK GS +RIVKNIRICSDCH A+KL
Sbjct: 506 REETRAVVFDVEEEEKEAVIGHHSEKLAVAFGFLYTKSGSTLRIVKNIRICSDCHYAIKL 565

Query: 481 VSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           VSKVFKRKI+IRDRK +HHFE+G CSC +YW
Sbjct: 566 VSKVFKRKIAIRDRKCFHHFEEGLCSCKDYW 596



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 113/282 (40%), Gaps = 49/282 (17%)

Query: 48  MINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSW 107
           +ING       L  +  F  +    D+ +  +L  L+R  S      +FN          
Sbjct: 12  IINGLTHPPPSLRPIISFSALDPSGDIDYALLL--LLR-TSTPPTVFLFN---------- 58

Query: 108 VVLISGFAQNGRPKEALA---LFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSY 164
              I GF++  RP   L+   LF  M  L L PN+     L   C+   A D G   +  
Sbjct: 59  -TTIRGFSRARRPGSLLSSVLLFVRMGVLSLAPNNFTFTFLFQGCSNCVAFDLGRQFHGM 117

Query: 165 IQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEA 224
           + K   ++D  +  ++I  Y+ CG ++ A  VF    + DV ++ S I G   NG+ +EA
Sbjct: 118 VIKNSFEMDVFVRNSIIRFYSVCGRLNDARWVFDESSELDVVSWNSMIDGCIRNGNILEA 177

Query: 225 FELFENMKSKG-IS------------------------------PDSISYIAVLSACSHL 253
             LF  M  +  IS                              P+S   ++VLSACS L
Sbjct: 178 LSLFSKMTERNDISWNMMISGYAQNGQPKEALALFREMQMLDQEPNSAILVSVLSACSQL 237

Query: 254 GWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA 295
           G ++ G  + H       ++ +    A ++D+  + G ++ A
Sbjct: 238 GALDHG-CWVHCYIGKKCVRVDSILSAALIDMYAKCGSIDLA 278


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 236/510 (46%), Positives = 362/510 (70%), Gaps = 1/510 (0%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VVK+    DV +K++ IQ Y+  GR+ DAR +F  S + DVV WN+MI+GY++ G +   
Sbjct: 158 VVKHGIGSDVHIKSAGIQMYASFGRLEDARKMF-YSGESDVVCWNTMIDGYLKCGVLEAA 216

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
             LF +MP +N  SWN ++ GL + G++ DA ++F++M +R  +SW  ++ G+   GR K
Sbjct: 217 KGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYK 276

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
           EAL +F++MQ  +  P   IL S+L+AC+ +GA+D G WV++Y+++  IKLD++L  AL+
Sbjct: 277 EALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALL 336

Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
           DMYAKCG +D+  +VF    ++++  + + I GLA++G + +A ELF  ++   + P+ I
Sbjct: 337 DMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGI 396

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
           + + VL+AC+H G+V+KG   F +M + +G+ PEL+HY CMVDLLGR+GL  EAE+ I S
Sbjct: 397 TLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINS 456

Query: 302 MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361
           MPMKP+  +WG LLGACR+H N ++ +R+G +L+E +  + GRY+LLSNIY +  + ++ 
Sbjct: 457 MPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDV 516

Query: 362 EEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYN 421
            ++RK M+ R IK  PG S+++L+G VHEF  GD SH + +EIY+  + I ++++  G++
Sbjct: 517 SKIRKLMKNRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKLKIIKERLQMAGHS 576

Query: 422 VETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLV 481
            +T  V+FDI+EEEKET + YHSEKLA+AFGLI T PG  I IVKN+R+C DCHSA KL+
Sbjct: 577 PDTSQVLFDIDEEEKETAVNYHSEKLAIAFGLINTLPGKRIHIVKNLRVCDDCHSATKLI 636

Query: 482 SKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           S++F R+I +RDR  YHHF++G+CSC ++W
Sbjct: 637 SQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 109/236 (46%), Gaps = 14/236 (5%)

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
           F + D A +VF+ +P  ++  W ++I G  +N +  +A+  +  M  +D  PN     +L
Sbjct: 80  FSNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRM-VIDARPNKFTYPTL 138

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
             AC+   A+  G  ++ ++ K  I  D  + +A I MYA  G ++ A ++F+S G+ DV
Sbjct: 139 FKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMFYS-GESDV 197

Query: 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHS 265
             + + I G    G    A  LF  M  K I   ++  I  L+   +LG   K       
Sbjct: 198 VCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNV-MINGLAKGGNLGDARK------- 249

Query: 266 MFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP---MKPDNVIWGTLLGAC 318
           +FD    + E+  ++ MVD    AG  +EA      M     +P   I  ++L AC
Sbjct: 250 LFDEMSERDEIS-WSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAAC 304


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 235/510 (46%), Positives = 361/510 (70%), Gaps = 1/510 (0%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VVK+    DV +K++ I  Y+  GR+ DAR +F  S + DVV WN+MI+GY++ G +   
Sbjct: 158 VVKHGIGSDVHIKSAGIHMYASFGRLEDARKMF-YSGESDVVCWNTMIDGYLKCGVLEAA 216

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
             LF +MP +N  SWN ++ GL + G++ DA ++F++M +R  +SW  ++ G+   GR K
Sbjct: 217 KGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYK 276

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
           EAL +F++MQ  +  P   IL S+L+AC+ +GA+D G WV++Y+++  IKLD++L  AL+
Sbjct: 277 EALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALL 336

Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
           DMYAKCG +D+  +VF    ++++  + + I GLA++G + +A ELF  ++   + P+ I
Sbjct: 337 DMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGI 396

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
           + + VL+AC+H G+V+KG   F +M + +G+ PEL+HY CMVDLLGR+GL  EAE+ I S
Sbjct: 397 TLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINS 456

Query: 302 MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361
           MPMKP+  +WG LLGACR+H N ++ +R+G +L+E +  + GRY+LLSNIY +  + ++ 
Sbjct: 457 MPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDV 516

Query: 362 EEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYN 421
            ++RK M+ R IK  PG S+++L+G VHEF  GD SH + +EIY+  + I ++++  G++
Sbjct: 517 SKIRKLMKDRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKLKIIKERLQMAGHS 576

Query: 422 VETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLV 481
            +T  V+FDI+EEEKET + YHSEKLA+AFGLI T PG  I IVKN+R+C DCHSA KL+
Sbjct: 577 PDTSQVLFDIDEEEKETAVNYHSEKLAIAFGLINTLPGKRIHIVKNLRVCDDCHSATKLI 636

Query: 482 SKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           S++F R+I +RDR  YHHF++G+CSC ++W
Sbjct: 637 SQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 109/236 (46%), Gaps = 14/236 (5%)

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
           F + D A +VF+ +P  ++  W ++I G  +N +  +A+  +  M  +D  PN     +L
Sbjct: 80  FSNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRM-VIDARPNKFTYPTL 138

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
             AC+   A+  G  ++ ++ K  I  D  + +A I MYA  G ++ A ++F+S G+ DV
Sbjct: 139 FKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMFYS-GESDV 197

Query: 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHS 265
             + + I G    G    A  LF  M  K I   ++  I  L+   +LG   K       
Sbjct: 198 VCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNV-MINGLAKGGNLGDARK------- 249

Query: 266 MFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP---MKPDNVIWGTLLGAC 318
           +FD    + E+  ++ MVD    AG  +EA      M     +P   I  ++L AC
Sbjct: 250 LFDEMSERDEIS-WSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAAC 304


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 247/505 (48%), Positives = 351/505 (69%), Gaps = 1/505 (0%)

Query: 8   AYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDK 67
           A DV   N++I  Y     +  AR VFD     DV+SWN+MINGY   G+I E  +LFD+
Sbjct: 258 ARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLFDE 317

Query: 68  MPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALF 127
           MP+RN VSWNS+L G V+ G+V+DA  +F++MP R +VSW  +++ +AQ G+P EALALF
Sbjct: 318 MPERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALF 377

Query: 128 REMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC 187
            +M+++ ++P  A +VSLLSACA LGALD G  +++YI    I+++SI+  AL+DMYAKC
Sbjct: 378 DQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKC 437

Query: 188 GSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVL 247
           G I LA QVF++   KDV A+ + I G+A++G+  EA +LF+ MK  G+ P+ I+++A+L
Sbjct: 438 GKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAIL 497

Query: 248 SACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPD 307
           SACSH G V++G      M   +GI+P+++HY C++DLL RAG LEEA   I +MPM+P+
Sbjct: 498 SACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPN 557

Query: 308 NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKT 367
               G LLG CR+H N E+G+ +G  LI     H GRYILLSNIY    K ++A +VR  
Sbjct: 558 PSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNL 617

Query: 368 MRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKN-YGYNVETRS 426
           M+   I + PG S+IEL G+VH F+AGD SH ++ +IY+   EI  ++K+  GY+ +T +
Sbjct: 618 MKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYSADTGN 677

Query: 427 VMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFK 486
           V+ D+EEE+KE  +  HSEKLA+A+GL+       IRIVKN+R+C DCH  +KL+SKV+ 
Sbjct: 678 VLLDMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVIKLISKVYG 737

Query: 487 RKISIRDRKHYHHFEDGSCSCLEYW 511
           R+I +RDR  +HHFEDG CSCL++W
Sbjct: 738 REIIVRDRNRFHHFEDGECSCLDFW 762



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 104/223 (46%), Gaps = 17/223 (7%)

Query: 98  QMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDY 157
           Q P  SL  +  LI   + +  P EAL L+  M    L+P+      ++ AC +     +
Sbjct: 156 QNPPPSL--YNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWF 213

Query: 158 GNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAM 217
           G  V++++ K   + DS + ++LI +YA    +  A Q+F+    +DV ++ + I G   
Sbjct: 214 GLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVK 273

Query: 218 NGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE-- 275
           +     A  +F+ M    +  D IS+  +++  + +G +++    F  M       PE  
Sbjct: 274 HVEMGHARMVFDRM----VCRDVISWNTMINGYAIVGKIDEAKRLFDEM-------PERN 322

Query: 276 LDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
           L  +  M+    + G +E+A    + MP + D V W ++L AC
Sbjct: 323 LVSWNSMLAGFVKCGNVEDAFGLFSEMPCR-DVVSWNSML-AC 363



 Score = 42.7 bits (99), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 7/89 (7%)

Query: 193 AMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSH 252
           A  +FH   +   S Y S I  L+ +   +EA  L+  M   G+ PD ++Y  V+ AC+ 
Sbjct: 148 AKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACN- 206

Query: 253 LGWVEKGFYYFHSMFDVHGIKP--ELDHY 279
               E    +F  +   H +K   E D Y
Sbjct: 207 ----ESSVTWFGLLVHTHVVKSGFECDSY 231


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 239/513 (46%), Positives = 356/513 (69%), Gaps = 6/513 (1%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDE-SDDLDVVSWNSMINGYVRNGEILE 60
           +VK+    D  + +S I+ Y+  GR+ +AR + D+   ++D V WN+MI+GY+R GE+  
Sbjct: 163 LVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEA 222

Query: 61  GLKLFDKMPQRNDVS-WNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGR 119
             +LF+ MP R+ +S WN+++ G  R G V+ A   F++M +R  +SW  +I G+ Q G 
Sbjct: 223 ARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGC 282

Query: 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
             EAL +F +MQ   + P   +L S+LSACA LGALD G W+++Y ++  I+LD +L  +
Sbjct: 283 FMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTS 342

Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
           L+DMYAKCG IDLA +VF    +K+VS++ + I GLAM+G + +A +LF  M    I+P+
Sbjct: 343 LVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---INPN 399

Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI 299
            I+++ VL+AC+H G V+KG   F+SM   +G++P+++HY C+VDLLGRAGLL EAE  +
Sbjct: 400 EITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVV 459

Query: 300 ASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGE 359
           +S+P +P   +WG LLGACR H N E+G+R+G +L+E +  + GRY LLSNIY +  + E
Sbjct: 460 SSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWE 519

Query: 360 NAEEVRKTMRKRKIKRAPGCSLIELD-GVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNY 418
              EVRK M++R IK  PG S+I+L  G VH+F+ GD SH + ++IYQ  +++ ++++  
Sbjct: 520 EVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQME 579

Query: 419 GYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAM 478
           GY  +   V+FDI+EEEKET +  HSEKLA+ FGLI T PG+ IRIVKN+R+C DCHSA 
Sbjct: 580 GYEPDPSQVLFDIDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSAT 639

Query: 479 KLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           KL+S+V+ R+I +RDR  YHHF +G+CSC ++W
Sbjct: 640 KLISQVYNREIIVRDRIRYHHFRNGACSCKDFW 672



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 107/238 (44%), Gaps = 12/238 (5%)

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
           R+ S + + RVF+ + K ++  W  +I    +N  P +A+ L+ EM      PN     +
Sbjct: 83  RYLSFESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPA 142

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK- 203
           +L AC+  G +  G  V++++ K  +  D  + ++ I MYA  G +  A ++    G + 
Sbjct: 143 VLKACSDAGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEV 202

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           D   + + I G    G    A ELFE M  + +     ++ A++S  S  G VE    +F
Sbjct: 203 DAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMIS---TWNAMISGFSRCGMVEVAREFF 259

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM---PMKPDNVIWGTLLGAC 318
             M +   I      ++ M+D   + G   EA      M    ++P   +  ++L AC
Sbjct: 260 DEMKERDEIS-----WSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSAC 312


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 239/513 (46%), Positives = 355/513 (69%), Gaps = 6/513 (1%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDE-SDDLDVVSWNSMINGYVRNGEILE 60
           +VK+    D  + +S I+ Y+  GR+ +AR + D+   ++D V WN+MI+GY+R GE+  
Sbjct: 164 LVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEA 223

Query: 61  GLKLFDKMPQRNDVS-WNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGR 119
             +LF+ MP R+ +S WN+++ G  R G V+ A   F++M +R  +SW  +I G+ Q G 
Sbjct: 224 ARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGC 283

Query: 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
             EAL +F +MQ   + P   +L S+LSACA LGALD G W+++Y ++  I+LD +L  +
Sbjct: 284 FMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTS 343

Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
           L+DMYAKCG IDLA +VF    +K+VS++ + I GLAM+G + +A +LF  M    I P+
Sbjct: 344 LVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---IYPN 400

Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI 299
            I+++ VL+AC+H G V+KG   F+SM   +G++P+++HY C+VDLLGRAGLL EAE  +
Sbjct: 401 EITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVV 460

Query: 300 ASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGE 359
           +S+P +P   +WG LLGACR H N E+G+R+G +L+E +  + GRY LLSNIY +  + E
Sbjct: 461 SSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWE 520

Query: 360 NAEEVRKTMRKRKIKRAPGCSLIELD-GVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNY 418
              EVRK M++R IK  PG S+I+L  G VH+F+ GD SH + ++IYQ  +++ ++++  
Sbjct: 521 EVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQME 580

Query: 419 GYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAM 478
           GY  +   V+FDI+EEEKET +  HSEKLA+ FGLI T PG+ IRIVKN+R+C DCHSA 
Sbjct: 581 GYEPDPSQVLFDIDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSAT 640

Query: 479 KLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           KL+S+V+ R+I +RDR  YHHF +G+CSC ++W
Sbjct: 641 KLISQVYNREIIVRDRIRYHHFRNGACSCKDFW 673



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 107/238 (44%), Gaps = 12/238 (5%)

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
           R+ S + + RVF+ + K ++  W  +I    +N  P +A+ L+ EM      PN     +
Sbjct: 84  RYLSFESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPA 143

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK- 203
           +L AC+  G +  G  V++++ K  +  D  + ++ I MYA  G +  A ++    G + 
Sbjct: 144 VLKACSDSGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEV 203

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           D   + + I G    G    A ELFE M  + +     ++ A++S  S  G VE    +F
Sbjct: 204 DAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMIS---TWNAMISGFSRCGMVEVAREFF 260

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM---PMKPDNVIWGTLLGAC 318
             M +   I      ++ M+D   + G   EA      M    ++P   +  ++L AC
Sbjct: 261 DEMKERDEIS-----WSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSAC 313


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  503 bits (1295), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 238/510 (46%), Positives = 340/510 (66%), Gaps = 14/510 (2%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VVK     +VF  N+LI  YS+CG +  AR +FD S   DVV+WN+MI+GY R       
Sbjct: 140 VVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNR------- 192

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
                   +++ +SW +I+ G V  G VD A + F++MP+R  VSW  +I G+ +    K
Sbjct: 193 -------IKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYK 245

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
           EAL LFREMQ+  ++P+   +VS+L+ACAQLGAL+ G W+ +YI K  +K D+ +  ALI
Sbjct: 246 EALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALI 305

Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
           DMY KCG++++A+ +F++   +D   +T+ + GLA+NG   EA  +F  M    ++PD +
Sbjct: 306 DMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEV 365

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
           +Y+ VLSAC+H G V++G  +F SM   HGI+P + HY CMVDLLG+AG L+EA   I +
Sbjct: 366 TYVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKN 425

Query: 302 MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361
           MPMKP++++WG LLGACR+H++AEM +R    ++E + N+   Y+L  NIY    K +  
Sbjct: 426 MPMKPNSIVWGALLGACRIHKDAEMAERAIEQILELEPNNGAVYVLQCNIYAACNKWDKL 485

Query: 362 EEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYN 421
            E+R+ M  R IK+ PGCSLIE++G+VHEF+AGD+SH +T+EIY    ++   +K  GY+
Sbjct: 486 RELRQVMMDRGIKKTPGCSLIEMNGIVHEFVAGDQSHPQTKEIYGKLNKMTSDLKIAGYS 545

Query: 422 VETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLV 481
             T  V  DI EE+KE  +  HSEKLA+AFGLI + PG  IRIVKN+R+C DCH   KLV
Sbjct: 546 PNTSEVFLDIAEEDKENAVYRHSEKLAIAFGLINSGPGVTIRIVKNLRMCIDCHHVAKLV 605

Query: 482 SKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           SKV+ R++ +RDR  +HHF  GSCSC +YW
Sbjct: 606 SKVYDREVIVRDRTRFHHFRHGSCSCKDYW 635



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 124/278 (44%), Gaps = 50/278 (17%)

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
           FG +  A ++F+ +P+ S+ SW ++  G+++   PK  ++L+ EM   +++P+      L
Sbjct: 61  FGDMCYARQLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFL 120

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVF-------- 197
                +  AL  G  ++ ++ K  +  +     ALI+MY+ CG ID+A  +F        
Sbjct: 121 FKGFTRSVALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDV 180

Query: 198 ---------HSYGDKDVSAYTSAIFGLAMNG---------HSI----------------- 222
                    ++   KDV ++T+ + G    G         H +                 
Sbjct: 181 VTWNAMISGYNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLR 240

Query: 223 -----EAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELD 277
                EA  LF  M++  I PD  + ++VL+AC+ LG +E G  +  +  D + +K +  
Sbjct: 241 LNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELG-EWIRTYIDKNKVKNDTF 299

Query: 278 HYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
               ++D+  + G +E A +   ++P + D   W  ++
Sbjct: 300 VGNALIDMYFKCGNVEMALSIFNTLPQR-DKFTWTAMV 336


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 252/550 (45%), Positives = 355/550 (64%), Gaps = 39/550 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +++K  F    FVKN+LI  Y+ CG V  AR VFDE  + +V +WNSM  GY ++G   E
Sbjct: 149 LIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEE 208

Query: 61  GLKLFDKMPQRN----DVSWNSILGGLVRF------------------------------ 86
            +KLF +M + +    +V+  S+L    R                               
Sbjct: 209 VVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITSLVD 268

Query: 87  -----GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
                G VD A R+F+QM +R +V+W  +ISG++Q  R +EAL LF EMQ  +++PN   
Sbjct: 269 MYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEIT 328

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           +VS+LS+CA LGAL+ G WV+ +I+KK +KL   L  AL+D YAKCGS++ +++VF    
Sbjct: 329 MVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMP 388

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
            K+V ++T  I GLA NG   +A E F  M  K + P+ +++I VLSACSH G V++G  
Sbjct: 389 VKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRD 448

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            F SM    GI+P ++HY CMVD+LGRAGL+EEA  FI +MP++P+ VIW TLL +C+VH
Sbjct: 449 LFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVH 508

Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
           +N E+G+     LI  +  H G YILLSNIY    + E+A +VR  M+++ IK+ PGCSL
Sbjct: 509 KNVEIGEESLKQLIILEPTHSGDYILLSNIYASVGRWEDALKVRGEMKEKGIKKTPGCSL 568

Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIG 441
           IELDGV+HEF A D  H +++EIY   E+++K+IK+ GY   T     D EE++KE+ + 
Sbjct: 569 IELDGVIHEFFAEDNVHSQSEEIYNAIEDMMKQIKSAGYVPNTAEARLDAEEDDKESSVS 628

Query: 442 YHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
           +HSEKLA+AFGLI + PG+ IRI KN+R+C+DCH+A KLVSKVF R+I +RDR  +HHF+
Sbjct: 629 HHSEKLAIAFGLIKSPPGTTIRITKNLRVCTDCHNATKLVSKVFNREIVVRDRTRFHHFK 688

Query: 502 DGSCSCLEYW 511
           +GSCSC +YW
Sbjct: 689 EGSCSCNDYW 698



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 110/230 (47%), Gaps = 2/230 (0%)

Query: 88  SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLS 147
           S+D A  +F Q+ +    ++ ++I GF     P EA+ LF+EM    ++P+      +L 
Sbjct: 73  SMDYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILK 132

Query: 148 ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSA 207
            C++L AL  G  +++ I K        +   LI MYA CG +++A +VF    +++V  
Sbjct: 133 VCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRT 192

Query: 208 YTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMF 267
           + S   G   +G+  E  +LF  M    I  D ++ ++VL+AC  L  +E G  + +   
Sbjct: 193 WNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELG-EWINRYV 251

Query: 268 DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
           +  G+K        +VD+  + G ++ A      M  + D V W  ++  
Sbjct: 252 EEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRR-DVVAWSAMISG 300


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 227/510 (44%), Positives = 338/510 (66%), Gaps = 31/510 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V K  ++ +V V N L+Q Y+ CG +  A  VFD                          
Sbjct: 162 VFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFD-------------------------- 195

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
                + P+ +  SWN ++GG ++ G    A R+F  MP R +VSW V+I+G+ Q  R K
Sbjct: 196 -----RTPECDGASWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFK 250

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
           E L LF++M    +EPN ++LV+ LSACA LGA++ G W+  Y+++K ++L   L  ALI
Sbjct: 251 EGLGLFQDMMGEKIEPNESVLVNALSACAHLGAMEQGQWIERYMERKNVRLTVRLGTALI 310

Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
           DMY+KCGS++ A++VFH   +K+V A+++ I GLA+NG   +A  LF  M+ +G+ P+ +
Sbjct: 311 DMYSKCGSVERALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEV 370

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
           ++I +L+ACSH   V++G  +FHSM  ++G+KP   H+ CMVDL GRAG+L++A+  I S
Sbjct: 371 TFIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKS 430

Query: 302 MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361
           MP KP++ IWG LL ACR+H + E+G+++G  L+E D NH GRY+LLSNIY    + +  
Sbjct: 431 MPFKPNSAIWGALLNACRIHGDTELGEQVGKRLLELDPNHGGRYVLLSNIYAACGRWDRV 490

Query: 362 EEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYN 421
            E+R+ MR+R++ + PGCS I+L   +HEF+AGD SH + + IY    E+ +++K  GY 
Sbjct: 491 AELRRMMRERQVSKTPGCSFIDLGDTIHEFVAGDSSHPQLEMIYAKLGEMSQELKAAGYK 550

Query: 422 VETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLV 481
            +T  V+ D++EEEKET + +HSEKLA+AFGLI T PG+ IRI KN+R+C+DCHSA KL+
Sbjct: 551 PDTGQVLLDMDEEEKETALCHHSEKLAIAFGLIKTDPGTTIRITKNLRVCADCHSATKLI 610

Query: 482 SKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           SK++ R+I +RDR  +HHF DGSCSC+++W
Sbjct: 611 SKIYNREIIVRDRCRFHHFRDGSCSCMDFW 640


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 242/549 (44%), Positives = 353/549 (64%), Gaps = 40/549 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
            K  FA D + +N+L+  YS CG +  AR VFD+ +D  VVSW +MI  + +  +  E +
Sbjct: 112 TKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAV 171

Query: 63  KLFDKMPQR-----NDVSWNSILGGLVR------------------FGS--------VDD 91
           +LFD+M +      N+V+  ++L    R                  FG         +D 
Sbjct: 172 RLFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDV 231

Query: 92  ACR---------VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
            C+         +F++  +++L SW ++I+G  ++   +EAL LFREMQ+  ++ +   +
Sbjct: 232 YCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTM 291

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            SLL AC  LGAL+ G W+++YI+K+ I +D  L  AL+DMYAKCGSI+ A+QVFH   +
Sbjct: 292 ASLLLACTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPE 351

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           KDV  +T+ I GLAM G +  A + F+ M  KG+ PD+I+++ VL+ACSH G+V++G  +
Sbjct: 352 KDVMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISH 411

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F+SM D +GI+P ++HY  +VD+LGRAG + EAE  I SMPM PD  + G LLGACR+H 
Sbjct: 412 FNSMSDTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHG 471

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           N E  +R    L+E D  H G Y+LLSNIY  + K E A+  R+ M +R +++ PGCS I
Sbjct: 472 NLEAAERAAKQLLEIDPYHSGTYVLLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCSQI 531

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E+ GVVHEF+ GD SH ++ EI +  E+++ K+KN GY  +   V+FD+ EEEKET +  
Sbjct: 532 EVHGVVHEFVKGDSSHRQSSEINEMLEDMISKLKNAGYVPDKSEVLFDMAEEEKETELSL 591

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSEKLA+AFGL+ T  G+ IR+VKN+RICSDCHSA KL+SK++ R+I +RDR  +HHF+D
Sbjct: 592 HSEKLAIAFGLLSTSVGTPIRVVKNLRICSDCHSATKLISKLYNREIIVRDRNRFHHFKD 651

Query: 503 GSCSCLEYW 511
           G+CSC  +W
Sbjct: 652 GTCSCRGFW 660



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 98/216 (45%), Gaps = 11/216 (5%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           GS+  A  VF+Q+P  +  +   +I G       +EAL  ++EM    L P+     SL 
Sbjct: 36  GSLQYARLVFSQIPNPTSYTCNSIIRGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLF 95

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
            +C        G  ++ +  K     D+     L++MY+ CG +  A +VF    DK V 
Sbjct: 96  KSCRNSSE---GKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVV 152

Query: 207 AYTSAIFGLAMNGHSIEAFELFEN-MKSKGISPDSISYIAVLSACSH---LGWVEKGFYY 262
           ++ + I   A      EA  LF+  MKS+ + P+ ++ + VL+AC+    L  V++    
Sbjct: 153 SWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKR---- 208

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENF 298
            H   D HG    +     ++D+  + G ++ A + 
Sbjct: 209 IHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDL 244



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 12/164 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           + K     DV +  +L+  Y+ CG +  A  VF E  + DV++W ++I G    G+    
Sbjct: 314 IKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENA 373

Query: 62  LKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMP-----KRSLVSWVVLIS 112
           L+ FD+M     + + +++  +L      G VD+    FN M      + ++  +  L+ 
Sbjct: 374 LQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYGGLVD 433

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALD 156
              + GR  EA  L +   S+ + P+  +L  LL AC   G L+
Sbjct: 434 ILGRAGRIAEAEELIK---SMPMAPDQFVLGGLLGACRIHGNLE 474


>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 226/472 (47%), Positives = 326/472 (69%), Gaps = 1/472 (0%)

Query: 41  DVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMP 100
           DV + NS+IN Y   G       LFD++P+ +DVSWNS++ G V+ G +D A  +F +M 
Sbjct: 149 DVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMA 208

Query: 101 KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNW 160
           +++ +SW  +ISG+ Q    KEAL LF EMQ+ D+EP++  L + LSACAQLGAL+ G W
Sbjct: 209 EKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKW 268

Query: 161 VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGH 220
           ++SY+ K  I++DS+L   LIDMYAKCG ++ A++VF +   K V A+T+ I G A +GH
Sbjct: 269 IHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGH 328

Query: 221 SIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA 280
             EA   F  M+  GI P+ I++ AVL+ACS+ G VE+G   F+SM   + +KP ++HY 
Sbjct: 329 GREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYG 388

Query: 281 CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQN 340
           C+VDLLGRAGLL+EA+ FI  MP+KP+ VIWG LL ACR+H+N E+G+ IG +LI  D  
Sbjct: 389 CIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPY 448

Query: 341 HDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEK 400
           H GRY+  +NI+    K + A E R+ M+++ + + PGCS I L+G  HEFLAGDRSH +
Sbjct: 449 HGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPE 508

Query: 401 TQEIYQFWEEIVKKIKNYGYNVETRSVMFD-IEEEEKETVIGYHSEKLALAFGLICTKPG 459
            ++I   W  + +K++  GY  E   ++ D ++++E+E ++  HSEKLA+ +GLI TKPG
Sbjct: 509 IEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLAITYGLIKTKPG 568

Query: 460 SVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           ++IRI+KN+R+C DCH   KL+SK++KR I +RDR  +HHF DG CSC +YW
Sbjct: 569 TIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 620



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 113/258 (43%), Gaps = 33/258 (12%)

Query: 95  VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC----- 149
           VF+   +     W ++I GF+ +  P+ +L L++ M       N+    SLL AC     
Sbjct: 71  VFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSA 130

Query: 150 --------AQLGALDYGNWVY-------SYIQKKCIKL-----------DSILCAALIDM 183
                   AQ+  L Y N VY       SY      KL           D +   ++I  
Sbjct: 131 FEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKG 190

Query: 184 YAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISY 243
           Y K G +D+A+ +F    +K+  ++T+ I G      + EA +LF  M++  + PD++S 
Sbjct: 191 YVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSL 250

Query: 244 IAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP 303
              LSAC+ LG +E+G  + HS  +   I+ +      ++D+  + G +EEA     ++ 
Sbjct: 251 ANALSACAQLGALEQG-KWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIK 309

Query: 304 MKPDNVIWGTLLGACRVH 321
            K     W  L+     H
Sbjct: 310 KKSVQA-WTALISGYAYH 326


>gi|357121594|ref|XP_003562503.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Brachypodium distachyon]
          Length = 544

 Score =  490 bits (1261), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 233/510 (45%), Positives = 336/510 (65%), Gaps = 4/510 (0%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
            K  F       N+ IQ Y   GRV DAR VFD     D VS+NSMI+GY  +G++    
Sbjct: 38  TKLGFLLCTRTNNAFIQGYCSAGRVTDARRVFDGMPRRDTVSFNSMIHGYAVSGDVGSAQ 97

Query: 63  KLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKE 122
           +LF+++     V+W S++ G  R G V+ A RVF +MP+R LVSW  +ISG   N  P E
Sbjct: 98  RLFERVLAPTPVTWTSMVAGFCRAGDVESARRVFEEMPERDLVSWNAMISGCVGNRLPVE 157

Query: 123 ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182
           AL LFR M      PN   +VS+LSAC   GAL+ G WV+ +++KK ++ D  L  AL+D
Sbjct: 158 ALCLFRWMMEEGFVPNRGTVVSVLSACTGAGALETGKWVHVFVEKKRLRWDEFLGTALVD 217

Query: 183 MYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG-ISPDSI 241
           MYAKCG+++LA++VF     ++   + + I GLAMNG+S +A ++F  M+  G ++PD +
Sbjct: 218 MYAKCGAVELALEVFTGLRARNTCTWNAMINGLAMNGYSAKALDMFRQMELNGTVAPDEV 277

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
           +++ VL ACSH G+V+ G  +F+++   +G++  L+HYACMVDLL R+G L+EA   I  
Sbjct: 278 TFVGVLLACSHAGFVDAGKEHFYTIPQKYGVELILEHYACMVDLLARSGHLQEAHKLITE 337

Query: 302 MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361
           MPMKPD V+W  LLG CR+H+N +M +   N++ E +    G ++LLSN+Y    +    
Sbjct: 338 MPMKPDVVVWRALLGGCRLHKNVKMAE---NVISEMEATCSGDHVLLSNLYAAVGRWNGV 394

Query: 362 EEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYN 421
           E+VR+TMR + I++ PGCS +E+DG +HEF++GD+SH    +I+    EI  +++ +GY 
Sbjct: 395 EDVRRTMRSKGIEKIPGCSSVEMDGSIHEFISGDKSHPSYDDIHAKLIEIGGRMQQHGYV 454

Query: 422 VETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLV 481
            ET  V +DIE+EEKE  +GYHSEKLA+AFGLI   P + IRIVKN+R C+DCHS  KLV
Sbjct: 455 TETAEVFYDIEDEEKEQALGYHSEKLAIAFGLIGGPPEATIRIVKNLRFCTDCHSFAKLV 514

Query: 482 SKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           SK++ R+I +RDR  +HHF  G+CSC ++W
Sbjct: 515 SKIYHREIVVRDRARFHHFRGGACSCNDFW 544



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 94/219 (42%), Gaps = 14/219 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V K    +D F+  +L+  Y+ CG V  A  VF      +  +WN+MING   NG   + 
Sbjct: 200 VEKKRLRWDEFLGTALVDMYAKCGAVELALEVFTGLRARNTCTWNAMINGLAMNGYSAKA 259

Query: 62  LKLFDKMP-----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVV-----LI 111
           L +F +M        ++V++  +L      G VD     F  +P++  V  ++     ++
Sbjct: 260 LDMFRQMELNGTVAPDEVTFVGVLLACSHAGFVDAGKEHFYTIPQKYGVELILEHYACMV 319

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK 171
              A++G  +EA  L  EM    ++P+  +  +LL  C     +     V S ++  C  
Sbjct: 320 DLLARSGHLQEAHKLITEMP---MKPDVVVWRALLGGCRLHKNVKMAENVISEMEATCSG 376

Query: 172 LDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
            D +L + L     +   ++   +   S G + +   +S
Sbjct: 377 -DHVLLSNLYAAVGRWNGVEDVRRTMRSKGIEKIPGCSS 414


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 232/510 (45%), Positives = 334/510 (65%), Gaps = 31/510 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K+ F  DV+V+NSL+  Y+  G    A  +F     +DVVSW SMI G+ + G++   
Sbjct: 145 IIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVESA 204

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
            KLFD+MP++N V+W++                               +ISG+AQN    
Sbjct: 205 RKLFDQMPEKNLVTWST-------------------------------MISGYAQNNHFD 233

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
           +A+ LF+ +QS  +  N  ++VS++S+CA LGAL+ G   + Y+ K  + L+ IL  AL+
Sbjct: 234 KAVELFKVLQSQGVRANETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALV 293

Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
           DMYA+CGSID A+ VF    ++D  ++T+ I GLAM+G+S  + + F  M   G++P  I
Sbjct: 294 DMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDI 353

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
           ++ AVLSACSH G VE+GF  F SM   H ++P L+HY CMVDLLGRAG LEEAE F+  
Sbjct: 354 TFTAVLSACSHGGLVERGFQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLK 413

Query: 302 MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361
           MP+KP+  +WG LLGACR+H+NAE+G+R+G +LI+    H G Y+LLSNIY    + E  
Sbjct: 414 MPVKPNAPVWGALLGACRIHKNAEIGERVGKILIQLLPQHSGYYVLLSNIYANAKEWEKV 473

Query: 362 EEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYN 421
            E+R+ M+ + +K+ PG SLIELDG VH+F  GD SH +  +I + WEEI+ +I+  GY 
Sbjct: 474 TEMRQMMKAKGLKKPPGHSLIELDGRVHKFTIGDSSHPEMDKIERMWEEILMRIRAAGYR 533

Query: 422 VETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLV 481
             T   +FDI+EEEKE+ +  HSEKLA+AFG++ ++ G+ IRIVKN+R+C DCH+A KL+
Sbjct: 534 GNTADALFDIDEEEKESALHRHSEKLAIAFGMMRSEAGTPIRIVKNLRVCEDCHTATKLI 593

Query: 482 SKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           SKVF R++ +RDR  +HHF  G CSC++YW
Sbjct: 594 SKVFGRELIVRDRNRFHHFRQGLCSCMDYW 623



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 129/280 (46%), Gaps = 33/280 (11%)

Query: 89  VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148
           +D A R+F+Q+   +L  +  +I G + +  P +A   + + Q   L P++     L+ +
Sbjct: 69  IDYASRIFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKS 128

Query: 149 CAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYA----------------------- 185
           C +L  +  G+  + +I K   + D  +  +L+ MYA                       
Sbjct: 129 CTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSW 188

Query: 186 --------KCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGIS 237
                   KCG ++ A ++F    +K++  +++ I G A N H  +A ELF+ ++S+G+ 
Sbjct: 189 TSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVR 248

Query: 238 PDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAEN 297
            +    ++V+S+C+HLG +E G    H     +G+   L     +VD+  R G +++A  
Sbjct: 249 ANETVMVSVISSCAHLGALELG-ERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVW 307

Query: 298 FIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIES 337
               +P + D + W  L+    +H  +E   +    ++E+
Sbjct: 308 VFEDLPER-DTLSWTALIAGLAMHGYSERSLKYFATMVEA 346



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 109/235 (46%), Gaps = 44/235 (18%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++ +  +  DV    S+I+ ++ CG V  AR +FD+  + ++V+W++MI+GY +N    +
Sbjct: 175 LIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDK 234

Query: 61  GLKLFDKMPQ----------------------------------RNDVSWNSILGGLV-- 84
            ++LF  +                                    +N ++ N ILG  +  
Sbjct: 235 AVELFKVLQSQGVRANETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVD 294

Query: 85  ---RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              R GS+D A  VF  +P+R  +SW  LI+G A +G  + +L  F  M    L P    
Sbjct: 295 MYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDIT 354

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKC---IKLDSILCAALIDMYAKCGSIDLA 193
             ++LSAC+  G ++ G  ++  +++      +L+   C  ++D+  + G ++ A
Sbjct: 355 FTAVLSACSHGGLVERGFQIFESMKRDHRVEPRLEHYGC--MVDLLGRAGKLEEA 407


>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 240/495 (48%), Positives = 341/495 (68%), Gaps = 1/495 (0%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DV   N++I  Y   G +   R VFD     DV+SWN++INGY   G+I E  +LFD+MP
Sbjct: 65  DVVSWNAMIDGYVKRGEMGHTRMVFDRMVCRDVISWNTIINGYAIVGKIDEAKRLFDEMP 124

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE 129
           +RN VSWNS+L G V+ G+V++A  +F++MP R +VSW  +++ +AQ G+P EALALF +
Sbjct: 125 ERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQ 184

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
           M+++ ++P  A +VSLLSACA LGALD G  +++YI    I+++SI+  AL+DMYAKCG 
Sbjct: 185 MRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGK 244

Query: 190 IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
           I LA QVF++   KDV A+ + I G+A++GH  EA +LF+ MK   + P+ I+++A+LSA
Sbjct: 245 ISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVAMLSA 304

Query: 250 CSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNV 309
           CSH G V++G      M   +GI+P+++HY C++DLL RAGLLEEA   I +MPM+P+  
Sbjct: 305 CSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEEAMELIGTMPMEPNPS 364

Query: 310 IWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMR 369
             G LLG CR+H N E+G+ +G  LI     H GRYILLSNIY    K ++A +VR  M+
Sbjct: 365 ALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMK 424

Query: 370 KRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKN-YGYNVETRSVM 428
              I + PG S+IEL G+VH F+AGD SH ++ +IY    EI  ++K+  GY+ +T +V+
Sbjct: 425 VNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYDKLNEIHTRLKSAIGYSADTGNVL 484

Query: 429 FDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRK 488
            D+EEE+KE  +  HSEKLA+A+GL+       IRIVKN+R+C DCH   KL+SKV+ R+
Sbjct: 485 LDMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVTKLISKVYGRE 544

Query: 489 ISIRDRKHYHHFEDG 503
           I +RDR  +HHFEDG
Sbjct: 545 IIVRDRNRFHHFEDG 559



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 82/176 (46%), Gaps = 15/176 (8%)

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           ++ AC +     +G  V++++ K   + DS +  +LI +YA    +  A Q+F    D+D
Sbjct: 6   VIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSLCSDRD 65

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           V ++ + I G    G       +F+ M    +  D IS+  +++  + +G +++    F 
Sbjct: 66  VVSWNAMIDGYVKRGEMGHTRMVFDRM----VCRDVISWNTIINGYAIVGKIDEAKRLFD 121

Query: 265 SMFDVHGIKPE--LDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
            M       PE  L  +  M+    + G +EEA    + MP + D V W ++L AC
Sbjct: 122 EM-------PERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCR-DVVSWNSML-AC 168


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 232/510 (45%), Positives = 346/510 (67%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K   + DV ++++ IQ Y   G V  AR +  E  + DV+ +N+MI+GY++ GE+   
Sbjct: 156 VIKQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAA 215

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
            +LF  M  +N  SWN ++ G+ + G +++A  +FN+M +++ +SW  +I G+ + G  K
Sbjct: 216 KELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYK 275

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
           EAL +F  MQ  ++ P   +L S+L+ACA LGALD G W+++Y+       D++L  AL+
Sbjct: 276 EALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTALV 335

Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
           DMYAKCG +D+A  VF     K+V  + + I GL M+G + +A ELF  M+ +   P+ I
Sbjct: 336 DMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGI 395

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
           + + VLSAC+H G V++G   F+SM +V+GI+P ++HY C+VDLLGRAGLL EAE  + S
Sbjct: 396 TLLGVLSACAHSGMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYS 455

Query: 302 MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361
           MPM+P   +WG LLGACR H + E+G+R+G +L+E +  + GRY LLSNIY    + ++ 
Sbjct: 456 MPMEPSAAVWGALLGACRKHGDVELGERVGKILLELEPQNSGRYALLSNIYARAGRWDDV 515

Query: 362 EEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYN 421
             VRK M++R +K + G S+I+ DGVVHEF  GD SH + + IY   + ++K++K  G++
Sbjct: 516 ANVRKLMKERGVKTSTGISMIDFDGVVHEFKMGDGSHPQMKNIYLMLKNMIKRLKMEGFS 575

Query: 422 VETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLV 481
             T  V+FDIEEEEKE  + YHSEKLA+AFGLI TKPG+ I +VKN+R+C DCHSA KL+
Sbjct: 576 PNTSQVLFDIEEEEKEAELQYHSEKLAIAFGLINTKPGTTIHVVKNLRMCEDCHSAFKLI 635

Query: 482 SKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           S+V+ R+I +RDR  YHHF+ G+CSC ++W
Sbjct: 636 SQVYDREIIVRDRARYHHFKTGTCSCKDFW 665



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/302 (22%), Positives = 123/302 (40%), Gaps = 64/302 (21%)

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
           F +++ A +VF  +P  ++  + ++I G  QN  P +A+  + +M      PN     +L
Sbjct: 77  FSNLNFALKVFEYVPNPNVFVFNIIIKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTL 136

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLD------------------------------SI 175
             AC    A + G  V++++ K+ +  D                               +
Sbjct: 137 FKACTAAEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDV 196

Query: 176 LC-AALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK 234
           +C  A+ID Y KCG ++ A ++F S  DK+V ++   + G+A  G   EA ELF  MK K
Sbjct: 197 ICFNAMIDGYLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEK 256

Query: 235 G-------------------------------ISPDSISYIAVLSACSHLGWVEKGFYYF 263
                                           I P      +VL+AC++LG +++G  + 
Sbjct: 257 NEISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQG-RWI 315

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
           H+  + +    +      +VD+  + G L+ A +    M  K +   W  ++    +H  
Sbjct: 316 HAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKME-KKEVFTWNAMICGLGMHGR 374

Query: 324 AE 325
           AE
Sbjct: 375 AE 376


>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 248/512 (48%), Positives = 337/512 (65%), Gaps = 34/512 (6%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +K     ++FV N++I+ Y+  G V +AR VFD S D D+ SWN MI GYV +GEI    
Sbjct: 144 IKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAK 203

Query: 63  KLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKE 122
           ++FD+M +R+ VSW +I+ G V+ G                                 KE
Sbjct: 204 EMFDEMSERDVVSWTTIIAGYVQVGCF-------------------------------KE 232

Query: 123 ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182
           AL LF EM      PN   L S L+ACA L ALD G W++ YI K  IK++  L A+L+D
Sbjct: 233 ALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLD 292

Query: 183 MYAKCGSIDLAMQVFH-SYGDK-DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           MYAKCG ID A +VFH  YG K  V  + + I G AM+G S EA +LFE MK + +SP+ 
Sbjct: 293 MYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNK 352

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
           ++++A+L+ACSH   VE+G  YF SM   +GI+PE++HY CMVDLLGR+GLL+EAE  + 
Sbjct: 353 VTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVF 412

Query: 301 SMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGEN 360
           +MPM PD  IWG LLGACR+H++ E GQRIG ++ E D +H G ++LL+N+Y  + + + 
Sbjct: 413 NMPMAPDATIWGALLGACRIHKDIERGQRIGKIIKELDSDHIGCHVLLANLYSASGQWDE 472

Query: 361 AEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGY 420
           A+ VR+ +     K+ PGCS IEL+GV H+FL GDRSH +T+++Y F +E+  K+KN GY
Sbjct: 473 AKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLVGDRSHPQTKQLYLFLDEMTTKLKNAGY 532

Query: 421 NVETRSVMFDI-EEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMK 479
             E   V+ DI +EE+KET +  HSEKLA+AFGLI T PG+ IRIVKN+R+C+DCH A K
Sbjct: 533 VPEFGEVLLDIDDEEDKETALSKHSEKLAIAFGLINTPPGTAIRIVKNLRVCADCHEATK 592

Query: 480 LVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            +SKV+KR+I +RDR  YHHF+DG CSC +YW
Sbjct: 593 FISKVYKREIIVRDRIRYHHFKDGFCSCKDYW 624



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 121/287 (42%), Gaps = 39/287 (13%)

Query: 72  NDVSWNSILGGLV--RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQ-NGRPKEALALFR 128
           + ++ N +L  L+   FGS+  A ++F+Q+PK  +  +  +I   A        ++ +F 
Sbjct: 46  HPITANKLLKVLIASSFGSLSYAHQLFDQIPKPDVFIYNTMIKAHAVIPTSSHNSMRIFL 105

Query: 129 EMQSLD-LEPNSAILVSLLSACAQ-LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAK 186
            M  +    PN    V +  AC   LG L+ G  +  +  K  ++ +  +  A+I MYA 
Sbjct: 106 SMVRVSGFLPNRYTFVFVFKACGNGLGVLE-GEQIRVHAIKIGLESNLFVTNAMIRMYAN 164

Query: 187 CGSIDLAMQV-------------------------------FHSYGDKDVSAYTSAIFGL 215
            G +D A +V                               F    ++DV ++T+ I G 
Sbjct: 165 WGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGY 224

Query: 216 AMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE 275
              G   EA +LF  M   G  P+  +  + L+AC++L  +++G  + H   D   IK  
Sbjct: 225 VQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQG-RWIHVYIDKSEIKMN 283

Query: 276 LDHYACMVDLLGRAGLLE-EAENFIASMPMKPDNVIWGTLLGACRVH 321
               A ++D+  + G ++  A+ F     +K     W  ++G   +H
Sbjct: 284 ERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMH 330


>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
          Length = 616

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 225/473 (47%), Positives = 325/473 (68%), Gaps = 2/473 (0%)

Query: 41  DVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMP 100
           D+ + NS+IN Y   G       LFD++ + + VSWNS++ G V+ G +D A  +F +MP
Sbjct: 144 DIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGYVKAGEMDMALTLFRKMP 203

Query: 101 -KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGN 159
            K + +SW  +ISG+ Q G  KEAL LF EMQ+ ++ P++  L S LSAC+QLGAL+ G 
Sbjct: 204 EKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSLASALSACSQLGALEQGK 263

Query: 160 WVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNG 219
           W++SY  K   ++DS+LC  LIDMYAKCG ++ A+ VF +   K V  +T+ I G A +G
Sbjct: 264 WIHSYANKTRTRIDSVLCCVLIDMYAKCGEMEEALGVFKNMKTKSVQVWTALISGYAYHG 323

Query: 220 HSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHY 279
              EA   F  M++ G+ P++I++ AVL+ACS+ G VE+G   F+++   + +KP ++HY
Sbjct: 324 LGREAISKFLEMQNMGVKPNAITFTAVLTACSYTGLVEEGKSVFNTIERDYNLKPTIEHY 383

Query: 280 ACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQ 339
            CMVDLLGRAGLL EA  FI  MP+KP+ VIWG+LL AC++H+N E+G++IG +LIE D 
Sbjct: 384 GCMVDLLGRAGLLNEANRFIQKMPLKPNAVIWGSLLKACQIHKNIELGEKIGEILIEMDS 443

Query: 340 NHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHE 399
           NH GRY+ ++NI+    K + A E R+ MR++ + + PGCS I L+G  HEFLAGDRSH 
Sbjct: 444 NHGGRYVHMANIHAMGKKWDKAAETRRLMREQGVVKVPGCSAISLEGTTHEFLAGDRSHA 503

Query: 400 KTQEIYQFWEEIVKKIKNYGYNVETRSVMFD-IEEEEKETVIGYHSEKLALAFGLICTKP 458
           + QEI   W  + +K++  GY  E   ++ D +++EEKE ++  HSEKLA+ +GL+ TKP
Sbjct: 504 EIQEIRTKWRFVRRKLEENGYVPELEDMLLDLVDDEEKEAIVHQHSEKLAITYGLMKTKP 563

Query: 459 GSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           G+ IRI+KN+R+C DCH  M L+SK++KR I +RDR  +HHF+DG CSC +YW
Sbjct: 564 GTTIRIMKNLRVCKDCHKVMNLISKIYKRDIVMRDRTRFHHFKDGKCSCGDYW 616


>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
          Length = 539

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 248/512 (48%), Positives = 337/512 (65%), Gaps = 34/512 (6%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +K     ++FV N++I+ Y+  G V +AR VFD S D D+ SWN MI GYV +GEI    
Sbjct: 59  IKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAK 118

Query: 63  KLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKE 122
           ++FD+M +R+ VSW +I+ G V+ G                                 KE
Sbjct: 119 EMFDEMSERDVVSWTTIIAGYVQVGCF-------------------------------KE 147

Query: 123 ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182
           AL LF EM      PN   L S L+ACA L ALD G W++ YI K  IK++  L A+L+D
Sbjct: 148 ALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLD 207

Query: 183 MYAKCGSIDLAMQVFH-SYGDK-DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           MYAKCG ID A +VFH  YG K  V  + + I G AM+G S EA +LFE MK + +SP+ 
Sbjct: 208 MYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNK 267

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
           ++++A+L+ACSH   VE+G  YF SM   +GI+PE++HY CMVDLLGR+GLL+EAE  + 
Sbjct: 268 VTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVF 327

Query: 301 SMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGEN 360
           +MPM PD  IWG LLGACR+H++ E GQRIG ++ E D +H G ++LL+N+Y  + + + 
Sbjct: 328 NMPMAPDATIWGALLGACRIHKDIERGQRIGKIIKELDSDHIGCHVLLANLYSASGQWDE 387

Query: 361 AEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGY 420
           A+ VR+ +     K+ PGCS IEL+GV H+FL GDRSH +T+++Y F +E+  K+KN GY
Sbjct: 388 AKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLVGDRSHPQTKQLYLFLDEMTTKLKNAGY 447

Query: 421 NVETRSVMFDI-EEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMK 479
             E   V+ DI +EE+KET +  HSEKLA+AFGLI T PG+ IRIVKN+R+C+DCH A K
Sbjct: 448 VPEFGEVLLDIDDEEDKETALSKHSEKLAIAFGLINTPPGTAIRIVKNLRVCADCHEATK 507

Query: 480 LVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            +SKV+KR+I +RDR  YHHF+DG CSC +YW
Sbjct: 508 FISKVYKREIIVRDRIRYHHFKDGFCSCKDYW 539



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 89/218 (40%), Gaps = 35/218 (16%)

Query: 137 PNSAILVSLLSACAQ-LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ 195
           PN    V +  AC   LG L+ G  +  +  K  ++ +  +  A+I MYA  G +D A +
Sbjct: 30  PNRYTFVFVFKACGNGLGVLE-GEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARR 88

Query: 196 V-------------------------------FHSYGDKDVSAYTSAIFGLAMNGHSIEA 224
           V                               F    ++DV ++T+ I G    G   EA
Sbjct: 89  VFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEA 148

Query: 225 FELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVD 284
            +LF  M   G  P+  +  + L+AC++L  +++G  + H   D   IK      A ++D
Sbjct: 149 LDLFHEMLQTGPPPNEFTLASALAACANLVALDQG-RWIHVYIDKSEIKMNERLLASLLD 207

Query: 285 LLGRAGLLE-EAENFIASMPMKPDNVIWGTLLGACRVH 321
           +  + G ++  A+ F     +K     W  ++G   +H
Sbjct: 208 MYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMH 245


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 240/511 (46%), Positives = 328/511 (64%), Gaps = 31/511 (6%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +VVK      V ++N+LI  YS C  V  A+ +F ES  LD +SWNSMI+GYV+ GEI +
Sbjct: 314 LVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEK 373

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
              LFD MP +++VSW++                               +ISG+AQ  R 
Sbjct: 374 ARALFDSMPDKDNVSWSA-------------------------------MISGYAQQDRF 402

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
            E L LF+EMQ    +P+  ILVS++SAC  L ALD G W+++YI+K  +K++ IL   L
Sbjct: 403 TETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGTTL 462

Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           I+MY K G ++ A++VF    +K VS + + I GLAMNG   ++ + F  MK  G++P+ 
Sbjct: 463 INMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNE 522

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
           I+++AVL AC H+G V++G  +F+SM   H I P + HY CMVDLLGRAG+L+EAE  I 
Sbjct: 523 ITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIE 582

Query: 301 SMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGEN 360
           SMPM PD   WG LLGAC+ + + E G+RIG  L+E   +HDG  +LLSNIY       +
Sbjct: 583 SMPMAPDVSTWGALLGACKKYGDNETGERIGRKLVELHPDHDGFNVLLSNIYASKGNWVD 642

Query: 361 AEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGY 420
             EVR  MR+  + + PGCS+IE  G VHEFLAGD++H + + I    +E+ KK+K  GY
Sbjct: 643 VLEVRGMMRQHGVVKTPGCSMIEAHGRVHEFLAGDKTHPQNEHIEHMLDEMAKKLKLEGY 702

Query: 421 NVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKL 480
             +TR V  DI+EEEKET +  HSEKLA+AFGLI   P + IRIVKN+RIC+DCH+A KL
Sbjct: 703 APDTREVSLDIDEEEKETTLFRHSEKLAIAFGLIAIDPPTPIRIVKNLRICNDCHTAAKL 762

Query: 481 VSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           +SK F R+I +RDR  +HHF+ GSCSC++YW
Sbjct: 763 ISKAFNREIVVRDRHRFHHFKQGSCSCMDYW 793



 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 110/325 (33%), Positives = 183/325 (56%), Gaps = 32/325 (9%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K  F  DV+++N+LI  Y+VCG + DAR VFD S  LD+VSWNSM+ GYV  G + E 
Sbjct: 152 VLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEA 211

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
             ++D+MP+RN ++ NS++    + G+V++AC++FN+M ++ LVSW  LIS + QN   +
Sbjct: 212 KDVYDRMPERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYE 271

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK---------- 171
           EAL LF+EM +  +  +  +++S+LSAC++L  +  G  V+  + K  I+          
Sbjct: 272 EALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALI 331

Query: 172 ---------------------LDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
                                LD I   ++I  Y KCG I+ A  +F S  DKD  ++++
Sbjct: 332 HMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSA 391

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I G A      E   LF+ M+ +G  PD    ++V+SAC+HL  +++G  + H+    +
Sbjct: 392 MISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQG-KWIHAYIRKN 450

Query: 271 GIKPELDHYACMVDLLGRAGLLEEA 295
           G+K  +     ++++  + G +E+A
Sbjct: 451 GLKINIILGTTLINMYMKLGCVEDA 475



 Score = 47.4 bits (111), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 47/237 (19%), Positives = 109/237 (45%), Gaps = 14/237 (5%)

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
           F +++ + ++F+ +   +      ++ G+ Q   P +A+ +++ M   ++  ++     L
Sbjct: 73  FININQSYQIFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPIL 132

Query: 146 LSACA-QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
             +C+ +L   D G  +  ++ K     D  +   LI+MYA CG++  A +VF      D
Sbjct: 133 FQSCSIRLAEFD-GKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLD 191

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           + ++ S + G  + G+  EA ++++ M  + +    I+  +++      G VE+    F+
Sbjct: 192 MVSWNSMLAGYVLVGNVEEAKDVYDRMPERNV----IASNSMIVLFGKKGNVEEACKLFN 247

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP---MKPDNVIWGTLLGAC 318
            M      + +L  ++ ++    +  + EEA      M    +  D V+  ++L AC
Sbjct: 248 EM-----KQKDLVSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSAC 299


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 243/548 (44%), Positives = 342/548 (62%), Gaps = 39/548 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           VK     D FV +SLI  Y+ CG V  AR VFD +++  VV WN+++  Y++NG+ +E +
Sbjct: 147 VKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVV 206

Query: 63  KLFDKMPQ---------------------------------------RNDVSWNSILGGL 83
           ++F  M +                                       RN     +++   
Sbjct: 207 EMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMY 266

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
            + G +  A R+F+ M  R +V+W  +ISG+ Q  + +EAL LF EMQ   +EPN   +V
Sbjct: 267 AKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMV 326

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           S+LSACA LGAL+ G WV+SY+++K + L +IL  AL+D YAKCG ID A++ F S   K
Sbjct: 327 SVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVK 386

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           +   +T+ I G+A NG   EA ELF +M+  GI P  +++I VL ACSH   VE+G  +F
Sbjct: 387 NSWTWTALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRHF 446

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
            SM   +GIKP ++HY CMVDLLGRAGL++EA  FI +MP++P+ VIW  LL +C VHRN
Sbjct: 447 DSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVHRN 506

Query: 324 AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE 383
             +G+     +I  + +H G Y+LLSNIY    + ++A  VRK M+ R I++ PGCSLIE
Sbjct: 507 VGIGEEALKQIISLNPSHSGDYVLLSNIYASAGQWKDAAMVRKEMKDRGIEKTPGCSLIE 566

Query: 384 LDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYH 443
           LDGVV EF A D  H + +EIYQ  EE++ +IK  GY   T  V  ++EE EKE  + +H
Sbjct: 567 LDGVVFEFFAEDSDHPELREIYQKVEEMIGRIKVAGYVPNTADVRLEVEEREKEVSVSHH 626

Query: 444 SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
           SEKLA+AFGL+   PG+ IR+ KN+R+C+DCHSA KL+SKV+ R+I +RDR  +HHF+DG
Sbjct: 627 SEKLAIAFGLMKLDPGATIRLSKNLRVCADCHSATKLISKVYDREIVVRDRNIFHHFKDG 686

Query: 504 SCSCLEYW 511
           +CSC +YW
Sbjct: 687 TCSCNDYW 694



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 102/218 (46%), Gaps = 4/218 (1%)

Query: 100 PKRSLVSWVVLISGFAQNGRPKEALALFREM--QSLDLEPNSAILVSLLSACAQLGALDY 157
           P  S   + VL+  F   G P++AL LF EM   +     +       L +C+++ ALD 
Sbjct: 79  PPLSTPCYNVLMRAFLHAGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMCALDV 138

Query: 158 GNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAM 217
           G  V +Y  K+ +  D  + ++LI MYA CG +  A  VF +  +  V  + + +     
Sbjct: 139 GRGVQAYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLK 198

Query: 218 NGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELD 277
           NG  +E  E+F+ M   G++ D ++ ++V++AC  +G  + G  +     D  G+     
Sbjct: 199 NGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLG-KWVAGHVDEEGLARNPK 257

Query: 278 HYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
               ++D+  + G + +A      M  + D V W  ++
Sbjct: 258 LVTALMDMYAKCGEIGKARRLFDGMQSR-DVVAWSAMI 294


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 224/466 (48%), Positives = 326/466 (69%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N++I+ Y  +GEI++  KLF+     + +SWNS++ G ++ GSV+ A  +F+ MP++ +V
Sbjct: 343 NALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIV 402

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           SW  +ISG+AQ+    E LALF EMQ   + P+  ILVS++SAC  L ALD G WV++YI
Sbjct: 403 SWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQGKWVHAYI 462

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
           +K  +K++ IL   L+DMY KCG ++ A++VF+   +K VS++ + I GLA+NG    + 
Sbjct: 463 RKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSL 522

Query: 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL 285
           ++F  MK+ G+ P+ I+++ VL AC H+G V++G  +F SM + HGI+P + HY CMVDL
Sbjct: 523 DMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDL 582

Query: 286 LGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRY 345
           LGRAGLL EAE  I SMPM PD   WG LLGAC+ H + EMG+R+G  LIE   +HDG +
Sbjct: 583 LGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFH 642

Query: 346 ILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIY 405
           +LLSNI+      E+  EVR  M+++ + + PGCSLIE +GVVHEFLAGD++H    ++ 
Sbjct: 643 VLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHEFLAGDKTHPWINKVE 702

Query: 406 QFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIV 465
               E+ K++K  GY  +T  V  DI+EEEKET +  HSEKLA+AFGL+   P + IRI+
Sbjct: 703 GMLNEMAKRLKMEGYAPDTNEVSLDIDEEEKETTLFRHSEKLAIAFGLLTISPPTPIRIM 762

Query: 466 KNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           KN+RIC+DCH+A KL+SK + R+I +RDR  +H+F++G+CSC++YW
Sbjct: 763 KNLRICNDCHTAAKLISKAYAREIVVRDRHRFHYFKEGACSCMDYW 808



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 114/325 (35%), Positives = 183/325 (56%), Gaps = 32/325 (9%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K  F  DV+V+N+LI  Y+VCG +RDAR +FDES  LD VSWNS++ GYV+ G++ E 
Sbjct: 167 VLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEA 226

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
             +FD+MPQRN V+ NS++  L + G V +A ++FN+M ++ +VSW  LISG+ QNG  +
Sbjct: 227 KLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYE 286

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
           EAL +F EM +  +  +  ++VS+LSACA L  +  G  ++  + +  I+    L  ALI
Sbjct: 287 EALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALI 346

Query: 182 DMYA-------------------------------KCGSIDLAMQVFHSYGDKDVSAYTS 210
            MY+                               KCGS++ A  +F    +KD+ ++++
Sbjct: 347 HMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSA 406

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I G A +    E   LF  M+   I PD    ++V+SAC+HL  +++G  + H+    +
Sbjct: 407 VISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQG-KWVHAYIRKN 465

Query: 271 GIKPELDHYACMVDLLGRAGLLEEA 295
           G+K  +     ++D+  + G +E A
Sbjct: 466 GLKVNVILGTTLLDMYMKCGCVENA 490



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/347 (20%), Positives = 156/347 (44%), Gaps = 20/347 (5%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRV--RDARWVFDESDDLDVVSWNSMINGYVRNGEIL 59
           ++   F  D F  + L++F +    +    +  +FD  ++ +   WN+M+  Y+++    
Sbjct: 64  MILTGFISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAE 123

Query: 60  EGLKLFDKMPQRN----DVSWNSILGG----LVRFGSVDDACRVFNQMPKRSLVSWVVLI 111
           + L L+  M + N    + ++  ++      L+ FG  +    V        +     LI
Sbjct: 124 KALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLI 183

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK 171
           + +A  G  ++A  LF E   LD    S    S+L+   + G ++    ++  + ++ I 
Sbjct: 184 NMYAVCGNMRDARKLFDESPVLD----SVSWNSILAGYVKKGDVEEAKLIFDQMPQRNI- 238

Query: 172 LDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM 231
              +   ++I +  K G +  A ++F+   +KD+ ++++ I G   NG   EA  +F  M
Sbjct: 239 ---VASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEM 295

Query: 232 KSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGL 291
            + G+  D +  ++VLSAC+HL  V+ G    H +    GI+  ++    ++ +   +G 
Sbjct: 296 NANGMRLDEVVVVSVLSACAHLSIVKTG-KMIHGLVIRMGIESYVNLQNALIHMYSGSGE 354

Query: 292 LEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338
           + +A+          D + W +++  C    + E  + + +++ E D
Sbjct: 355 IMDAQKLFNG-SHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKD 400


>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 230/503 (45%), Positives = 333/503 (66%), Gaps = 1/503 (0%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DV   N++I   S  G V +AR +FD   + +  SWNSMI  Y + G+I     +FD  P
Sbjct: 75  DVVANNAMISALSKHGYVEEARNLFDNMTERNSCSWNSMITCYCKLGDINSARLMFDCNP 134

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQM-PKRSLVSWVVLISGFAQNGRPKEALALFR 128
            ++ VSWN+I+ G  +   +  A  +F  M   R+ V+W  +IS + Q G    A+++F+
Sbjct: 135 VKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISAYVQCGEFGTAISMFQ 194

Query: 129 EMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCG 188
           +MQS +++P    +VSLLSACA LGALD G W++ YI+ K +K+D +L  ALIDMY KCG
Sbjct: 195 QMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCG 254

Query: 189 SIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248
           +++ A+ VFH    K++  + S I GL MNG   EA   F  M+ +GI PD ++++ +LS
Sbjct: 255 ALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILS 314

Query: 249 ACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDN 308
            CSH G +  G  YF  M  V+G++P ++HY CMVDLLGRAG L+EA   I +MPMKP++
Sbjct: 315 GCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNS 374

Query: 309 VIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTM 368
           ++ G+LL AC++H++ ++G+++   L+E D    G Y+ LSN+Y    + ++    RK M
Sbjct: 375 MVLGSLLRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYASLSRWDDVNTCRKLM 434

Query: 369 RKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVM 428
            KR + + PGCS IE++ +VHEF+AGD SH +  +I  F +EI K++K  G+   T +V+
Sbjct: 435 IKRGVHKTPGCSSIEVNNIVHEFVAGDTSHPQFTQINAFLDEIAKELKGQGHVPNTANVL 494

Query: 429 FDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRK 488
            DIEEEEKE  I YHSE++A+AFGL+ T PG  IR+VKN+R CSDCHSAMKL+S  FKR+
Sbjct: 495 HDIEEEEKEGAIRYHSERIAVAFGLMSTPPGKTIRVVKNLRTCSDCHSAMKLISNAFKRE 554

Query: 489 ISIRDRKHYHHFEDGSCSCLEYW 511
           I +RDRK +HHF +GSCSC +YW
Sbjct: 555 IIVRDRKRFHHFRNGSCSCNDYW 577



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 86/184 (46%), Gaps = 9/184 (4%)

Query: 134 DLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLA 193
           D+ P+      +L +CA  G    G   +  I K   + D IL   L+D YAK G +  A
Sbjct: 5   DVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGDLKCA 64

Query: 194 MQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL 253
            +VF     +DV A  + I  L+ +G+  EA  LF+NM  +    +S S+ ++++    L
Sbjct: 65  KRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMTER----NSCSWNSMITCYCKL 120

Query: 254 GWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGT 313
           G +         MFD + +K ++  +  ++D   ++  L  A+     M    ++V W T
Sbjct: 121 GDINSA----RLMFDCNPVK-DVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNT 175

Query: 314 LLGA 317
           ++ A
Sbjct: 176 MISA 179


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 231/503 (45%), Positives = 332/503 (66%), Gaps = 7/503 (1%)

Query: 16  SLIQFYSVCGRVRDA-------RWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM 68
           +L+   S C +++D        R+V D   +   V  N++I+ Y   G++   L +FD M
Sbjct: 222 TLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNM 281

Query: 69  PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFR 128
             R+ +SW +I+ G    G V  A   F++MP+R  VSW  +I G+ Q  R KE L+LFR
Sbjct: 282 KSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFR 341

Query: 129 EMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCG 188
           EMQ+ +++P+   +VS+L+ACA LGAL+ G W+ +YI K  IK+DS +  ALIDMY  CG
Sbjct: 342 EMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCG 401

Query: 189 SIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248
           +++ A+++F++   +D  ++T+ IFGLA+NG+  EA ++F  M    I+PD ++ I VL 
Sbjct: 402 NVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLC 461

Query: 249 ACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDN 308
           AC+H G V+KG  +F  M   HGI+P + HY CMVDLLGRAG L+EA   I +MP+KP++
Sbjct: 462 ACTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNS 521

Query: 309 VIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTM 368
           ++WG+LLGACRVHR+ EM +     ++E +  +   Y+LL NIY    + E   EVRK M
Sbjct: 522 IVWGSLLGACRVHRDEEMAEMAAQQILELEPENGAVYVLLCNIYAACNRWEKLHEVRKLM 581

Query: 369 RKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVM 428
             R IK+ PGCSLIE++G VHEF+AGD+ H +++EIY   +E+   +K  GY+ +T  V 
Sbjct: 582 MDRGIKKTPGCSLIEMNGSVHEFVAGDQVHPQSKEIYSKLDEMSVDLKFAGYSPDTSEVF 641

Query: 429 FDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRK 488
            DI EEEKE+ +  HSEKLA+AFGLI + PG  IRIVKN+R+C DCH   KLVSKV+ R+
Sbjct: 642 LDIGEEEKESAVYRHSEKLAIAFGLISSGPGVTIRIVKNLRMCVDCHYVAKLVSKVYNRE 701

Query: 489 ISIRDRKHYHHFEDGSCSCLEYW 511
           + +RDR  +HHF  GSCSC +YW
Sbjct: 702 VIVRDRTRFHHFRHGSCSCKDYW 724



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 163/361 (45%), Gaps = 72/361 (19%)

Query: 25  GRVRDARWVFDESDDLDVVSWNSMINGYVRNG----------EILE-------------- 60
           G +  AR VFD     +   WN+MI GY R G          E+LE              
Sbjct: 67  GDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLL 126

Query: 61  -----------GLKLFDKMPQRNDVSWNSILGGLVRF----GSVDDACRVFNQMPKRSLV 105
                      G +L D + +    S   +   L+      G V  A  VF++  K  +V
Sbjct: 127 KRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVV 186

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           +W V+ISG+ ++ +  E++ LF EM+ + + P+S  LVS+LSAC++L  L+ G  V+ Y+
Sbjct: 187 TWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYV 246

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHS---- 221
           +   I+   +L  ALIDMYA CG +D A+ +F +   +DV ++T+ + G    G      
Sbjct: 247 KDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLAR 306

Query: 222 ---------------------------IEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
                                       E   LF  M++  I PD  + +++L+AC+HLG
Sbjct: 307 NYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLG 366

Query: 255 WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTL 314
            +E G  +  +  D + IK +      ++D+    G +E+A     +MP + D + W  +
Sbjct: 367 ALELG-EWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHR-DKISWTAV 424

Query: 315 L 315
           +
Sbjct: 425 I 425


>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
          Length = 575

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 231/511 (45%), Positives = 336/511 (65%), Gaps = 1/511 (0%)

Query: 2   VVKNSFAY-DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
            +K+ FA  D+FV+ +L++ Y+  GR   AR  FDE+   DV   N M+  YV  GE+ E
Sbjct: 65  ALKSGFAAADLFVRTALVEAYAKAGRADLARAAFDEAPRRDVFLCNVMLAAYVTRGEVAE 124

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
             ++FD M +R+ VSWN+++ G    G VD A  VFN M  R   SW  ++S + +  R 
Sbjct: 125 ARRVFDGMRERDMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRS 184

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
           K+AL L+REM++  + P+   +VS+LSAC+ +GAL  G  V+ +++   ++LD  L  AL
Sbjct: 185 KDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVELDVKLGTAL 244

Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           IDMYAKCG I+ +++VFHS   KDV  ++S I GLA +G   +A  LF  M S+G+ P+ 
Sbjct: 245 IDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNE 304

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
           +++I VL +C+HLG V  G  YF SM  VHG+ P++ HY CMVDLLGR+G +EEA+  I 
Sbjct: 305 VTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYGCMVDLLGRSGHIEEAKQLIR 364

Query: 301 SMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGEN 360
            MP +PD VIW  LLGACR+++N E+ +     L   D + DG Y+LLSNIY +    E 
Sbjct: 365 DMPFEPDAVIWRALLGACRIYKNVEVAEEAMAKLRVLDPHADGHYVLLSNIYAQANSWEG 424

Query: 361 AEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGY 420
             E+R+T+R+ +I+R PG S IE    +HEF++GDRSH +++EIY+   E++ +++  GY
Sbjct: 425 VAEMRRTLRRERIQRIPGRSSIEWQNTIHEFISGDRSHPRSKEIYKMLGEMMDRLRQAGY 484

Query: 421 NVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKL 480
              T  V+ DI+E+ KE  +  HSEKLA+AFGL+ T  GS +RI KN+R C DCHSA+KL
Sbjct: 485 KPMTGLVLQDIDEQSKERALAEHSEKLAVAFGLLTTPAGSTLRITKNLRACEDCHSAIKL 544

Query: 481 VSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           ++ +++RK+ IRDR  +HHF +G CSC +YW
Sbjct: 545 IALLYERKLIIRDRNRFHHFSEGRCSCKDYW 575


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 242/551 (43%), Positives = 344/551 (62%), Gaps = 40/551 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V   S   D     +LI  Y++ G + DAR +F+E    D VSWN+MI GY ++G   E
Sbjct: 188 LVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEE 247

Query: 61  GLKLFDKMPQRNDV--------------------------SW-------------NSILG 81
            L  F +M + N                            SW             N+++ 
Sbjct: 248 ALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALID 307

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G +D A  +F  + ++ ++SW V+I G++     KEALALFR+MQ  ++EPN   
Sbjct: 308 MYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVT 367

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKL-DSILCAALIDMYAKCGSIDLAMQVFHSY 200
            VS+L ACA LGALD G W+++YI KK + L ++ L  +LIDMYAKCG+I+ A QVF   
Sbjct: 368 FVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGM 427

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
             K + ++ + I GLAM+GH+  A ELF  M+ +G  PD I+++ VLSACSH G VE G 
Sbjct: 428 KPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGR 487

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
             F SM + + I P+L HY CM+DLLGRAGL +EAE  + +M MKPD  IWG+LLGACRV
Sbjct: 488 QCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRV 547

Query: 321 HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS 380
           H N E+G+     L E +  + G Y+LLSNIY    + ++   +R  +  + +K+ PGCS
Sbjct: 548 HGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCS 607

Query: 381 LIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVI 440
            IE+D VVHEFL GD+ HE++Q+IY+  +EI + ++  G+  +T  V++D++EE KE  +
Sbjct: 608 SIEVDSVVHEFLVGDKVHEQSQDIYKMLDEIDQLLEKAGHVPDTSEVLYDMDEEWKEGSL 667

Query: 441 GYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF 500
            +HSEKLA+AFGLI TKP + IRIVKN+R+C +CHSA+KL+SK+F R+I  RDR  +HHF
Sbjct: 668 SHHSEKLAIAFGLISTKPETTIRIVKNLRVCGNCHSAIKLISKIFNREIIARDRNRFHHF 727

Query: 501 EDGSCSCLEYW 511
           +DGSCSC++YW
Sbjct: 728 KDGSCSCMDYW 738



 Score =  181 bits (460), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 97/284 (34%), Positives = 166/284 (58%), Gaps = 5/284 (1%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
            S+IN Y +NGE+     +F K   R+ VS+ +++ G    G +DDA R+F ++P R  V
Sbjct: 171 TSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAV 230

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           SW  +I+G+AQ+GR +EALA F+EM+  ++ PN + +V++LSACAQ G+L+ GNWV S+I
Sbjct: 231 SWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWI 290

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
           +   +  +  L  ALIDMY+KCG +D A  +F    +KD+ ++   I G +      EA 
Sbjct: 291 EDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEAL 350

Query: 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIK-PELDHYACMVD 284
            LF  M+   + P+ ++++++L AC++LG ++ G  + H+  D   +       +  ++D
Sbjct: 351 ALFRKMQQSNVEPNDVTFVSILPACAYLGALDLG-KWIHAYIDKKFLGLTNTSLWTSLID 409

Query: 285 LLGRAGLLEEAENFIASMPMKPDNV-IWGTLLGACRVHRNAEMG 327
           +  + G +E A+   A   MKP ++  W  ++    +H +A M 
Sbjct: 410 MYAKCGNIEAAKQVFAG--MKPKSLGSWNAMISGLAMHGHANMA 451



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 117/263 (44%), Gaps = 33/263 (12%)

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
           FG++  A  +F  + + +   W  +I G + +  P  A+  +  M    +EPNS     L
Sbjct: 79  FGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFL 138

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
           L +CA++GA   G  ++ ++ K  ++ D  +  +LI+MYA+ G +  A  VF     +D 
Sbjct: 139 LKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDA 198

Query: 206 SAYT-------------------------------SAIFGLAMNGHSIEAFELFENMKSK 234
            ++T                               + I G A +G   EA   F+ MK  
Sbjct: 199 VSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRA 258

Query: 235 GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEE 294
            ++P+  + + VLSAC+  G +E G  +  S  + HG+   L     ++D+  + G L++
Sbjct: 259 NVAPNESTMVTVLSACAQSGSLELG-NWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDK 317

Query: 295 AENFIASMPMKPDNVIWGTLLGA 317
           A +    +  K D + W  ++G 
Sbjct: 318 ARDLFEGICEK-DIISWNVMIGG 339


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 226/510 (44%), Positives = 343/510 (67%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K     D+FV+ +LI+ Y+  G +  AR + DE    D+V +N ++  YVR GEI   
Sbjct: 131 VLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVGEINLA 190

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
             LFD+MP+R+ VSWN+++ G    G V  A ++F++  +R L+SW  +I+ +A+  +  
Sbjct: 191 HDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSN 250

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
           EAL LF EMQ  ++ P+   +VS+LSAC  +GAL  G  ++  I++  I++D  L  +L+
Sbjct: 251 EALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTSLV 310

Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
           DMYAKCG ID +++VF+   ++DV A+++ I GLA +G    A + F  M S+ I P+ +
Sbjct: 311 DMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDV 370

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
           ++I VLSACSH+G V++G+ YF SM  V+ + P+++HY C+VD+LGRAG L+EA   I S
Sbjct: 371 TFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAMELIKS 430

Query: 302 MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361
           MP  PD ++W  LLGACR+++N E+ +     L+E + + DG Y+LLSNIY +  + +  
Sbjct: 431 MPFAPDAIVWRALLGACRIYKNVEIAEEATVNLLELEPHVDGNYVLLSNIYSQAKEWDKV 490

Query: 362 EEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYN 421
             VR+ M+   I++ PG S IE+D  VHEF+AGD+SH ++++I +   EI  ++K  GY 
Sbjct: 491 VNVRRMMKNINIQKVPGSSSIEVDNAVHEFVAGDQSHPESKKILRMLSEITARLKANGYA 550

Query: 422 VETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLV 481
             T SV+ D +E+EKE  + +HSEKLA+AFGL+ T PGS IRIVKN+R+C DCH A+KL+
Sbjct: 551 PLTASVLQDFDEKEKENALAHHSEKLAIAFGLLSTAPGSTIRIVKNLRVCDDCHIAIKLI 610

Query: 482 SKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           S+ +KR+I +RDR  +HHF +GSCSC +YW
Sbjct: 611 SRTYKRRIIVRDRNRFHHFVNGSCSCKDYW 640



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 156/359 (43%), Gaps = 23/359 (6%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRD---ARWVFDESDDLDVVSWNSMINGYVRNGE 57
           +++K S   + FV   L++    C    D   AR VFDE    D   WN+MI  Y+ +  
Sbjct: 25  LIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIPSPDTFIWNTMIRAYLNSQN 84

Query: 58  ILEGLKLFDKMPQRNDVSWNSILGGLV-----RFGSVDDACRVFNQMPKRSLVS----WV 108
             E + LF +M  +  +  +S    LV     R     +  ++  Q+ K  L S      
Sbjct: 85  PQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQKLHTQVLKIGLGSDLFVET 144

Query: 109 VLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKK 168
            LI  +A+ G  + A  +  EM   DL P +     LL+   ++G ++  + ++  + ++
Sbjct: 145 ALIEMYAKFGDIEIARNILDEMAHPDLVPYNV----LLAEYVRVGEINLAHDLFDRMPER 200

Query: 169 CIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELF 228
               D +    +I  +A  G +  A ++F    ++D+ +++S I   A    S EA  LF
Sbjct: 201 ----DLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALRLF 256

Query: 229 ENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGR 288
             M+   + PD ++ ++VLSAC  +G +  G    H   + + I+ +L     +VD+  +
Sbjct: 257 HEMQLANVLPDKVTMVSVLSACGDVGALGMG-KMIHECIERNRIEIDLKLGTSLVDMYAK 315

Query: 289 AGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMG-QRIGNMLIESDQNHDGRYI 346
            G ++ +      M  + D   W  ++     H   E+       M+ E  + +D  +I
Sbjct: 316 CGDIDNSLRVFNGMNNR-DVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFI 373


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 233/512 (45%), Positives = 345/512 (67%), Gaps = 19/512 (3%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESD-DLDVVSWNSMINGYVRNGEIL 59
           + +K  F  D FV ++L++ Y +CG ++DAR +F ++  + D+V    M +   R+GEI 
Sbjct: 153 LALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVV---MTDRRKRDGEI- 208

Query: 60  EGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGR 119
                         V WN ++ G +R G    A  +F++M +RS+VSW  +ISG++ NG 
Sbjct: 209 --------------VLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGF 254

Query: 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
            K+A+ +FREM+  D+ PN   LVS+L A ++LG+L+ G W++ Y +   I++D +L +A
Sbjct: 255 FKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSA 314

Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
           LIDMY+KCG I+ A+ VF     ++V  +++ I G A++G + +A + F  M+  G+ P 
Sbjct: 315 LIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPS 374

Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI 299
            ++YI +L+ACSH G VE+G  YF  M  V G++P ++HY CMVDLLGR+GLL+EAE FI
Sbjct: 375 DVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFI 434

Query: 300 ASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGE 359
            +MP+KPD+VIW  LLGACR+  N EMG+R+ N+L++   +  G Y+ LSN+Y       
Sbjct: 435 LNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWS 494

Query: 360 NAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYG 419
              E+R  M+++ I++ PGCSLI++DGV+HEF+  D SH K +EI     EI  K++  G
Sbjct: 495 EVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAG 554

Query: 420 YNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMK 479
           Y   T  V+ ++EEE+KE V+ YHSEK+A AFGLI T PG  IRIVKN+RIC DCHS++K
Sbjct: 555 YRPITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIK 614

Query: 480 LVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           L+SKV+KRKI++RDRK +HHF+DGSCSC++YW
Sbjct: 615 LISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 646



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 131/284 (46%), Gaps = 50/284 (17%)

Query: 89  VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKE--ALALFREMQSLD-LEPNSAILVSL 145
           +D A ++FNQMP+R+  SW  +I GF+++   K   A+ LF EM S + +EPN     S+
Sbjct: 75  LDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSV 134

Query: 146 LSACAQLG-----------ALDYG---------NWVYSYIQ------------KKCIKLD 173
           L ACA+ G           AL YG         N V  Y+             K  I+ D
Sbjct: 135 LKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKD 194

Query: 174 SILCA-------------ALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGH 220
            ++                +ID Y + G    A  +F     + V ++ + I G ++NG 
Sbjct: 195 MVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGF 254

Query: 221 SIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA 280
             +A E+F  MK   I P+ ++ ++VL A S LG +E G  + H   +  GI+ +    +
Sbjct: 255 FKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELG-EWLHLYAEDSGIRIDDVLGS 313

Query: 281 CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
            ++D+  + G++E+A +    +P + + + W  ++    +H  A
Sbjct: 314 ALIDMYSKCGIIEKAIHVFERLP-RENVITWSAMINGFAIHGQA 356


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 243/548 (44%), Positives = 344/548 (62%), Gaps = 39/548 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           VK     D FV +SLI  Y+ C  V  A+ +FD  ++  VV WN++I  Y++NG  +E +
Sbjct: 146 VKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVV 205

Query: 63  KLFDKMPQR----NDVSWNSILG---------------------GLVR------------ 85
           ++F  M +     ++++  S++                      GLVR            
Sbjct: 206 EMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMY 265

Query: 86  --FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
              G +  A R+F+ M  R +V+W  +ISG+ Q  + +EALALF EMQ  ++EPN   +V
Sbjct: 266 AKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMV 325

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           S+LSACA LGAL+ G WV+SYI++K + L  IL  AL+D YAKCG ID A++ F S   K
Sbjct: 326 SVLSACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVK 385

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           +   +T+ I G+A NG   EA ELF +M+   I P  +++I VL ACSH   VE+G  +F
Sbjct: 386 NSWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHF 445

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
            SM   +GIKP  +HY C+VDLLGRAGL++EA  FI +MP++P+ VIW  LL +C VH+N
Sbjct: 446 DSMTQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVHKN 505

Query: 324 AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE 383
            E+G+     ++  + +H G YILLSNIY    + +NA  +RK M+ R I++ PGCSLIE
Sbjct: 506 VEIGEEALKQIVSLNPSHSGDYILLSNIYASVGQWKNAAMIRKEMKDRGIEKTPGCSLIE 565

Query: 384 LDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYH 443
           LDGVV EF A D  H + +EIYQ  EE++ +IK  GY   T  V  +++E EKE  + +H
Sbjct: 566 LDGVVVEFFAEDSDHPQLKEIYQKVEEMIDRIKMAGYIPNTADVRLEVDEHEKEVSVSHH 625

Query: 444 SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
           SEKLA+AFGL+   PG+ IR+ KN+R+C+DCHSA KL+SKV+ R+I +RDR  +HHF+DG
Sbjct: 626 SEKLAIAFGLMKLDPGATIRLSKNLRVCTDCHSATKLISKVYNREIVVRDRNRFHHFKDG 685

Query: 504 SCSCLEYW 511
           +CSC +YW
Sbjct: 686 TCSCNDYW 693



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 105/219 (47%), Gaps = 7/219 (3%)

Query: 100 PKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE---PNSAILVSLLSACAQLGALD 156
           P  S   + VL+      G P++AL LF EM  LD+    P+   +   L +C+++  LD
Sbjct: 79  PPLSTPCYNVLMRALLHAGHPEDALHLFVEM--LDVASVCPDQHTVACALKSCSRMCTLD 136

Query: 157 YGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLA 216
            G  + +Y  K+ +  D  + ++LI MYA C  +  A  +F +  +  V  + + I    
Sbjct: 137 VGRGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYM 196

Query: 217 MNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPEL 276
            NG+ +E  E+F+ M   G++ D I+ ++V++AC  +G  + G  +     D  G+    
Sbjct: 197 KNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLG-KWVAEYVDEKGLVRNR 255

Query: 277 DHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
           +    ++D+  + G L +A      M  + D V W  ++
Sbjct: 256 NLMTALIDMYAKCGELGKARRLFDGMQSR-DVVAWSAMI 293


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 234/548 (42%), Positives = 348/548 (63%), Gaps = 39/548 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
            K  FA D +++N+L+  YS CG +  AR VFD+  +  VVSW +MI  Y +     E +
Sbjct: 164 TKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAI 223

Query: 63  KLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRV----------------------- 95
           KLF +M     + N+++  ++L    R   ++ A +V                       
Sbjct: 224 KLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVY 283

Query: 96  ------------FNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
                       FN+MP+++L  W ++I+G  ++   +EAL+LF EMQ   ++ +   + 
Sbjct: 284 CKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMA 343

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           SLL AC  LGAL+ G W++ YI+K+ I++D  L  AL+DMYAKCGSI+ AM+VF    +K
Sbjct: 344 SLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEK 403

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           DV  +T+ I GLAM G  ++A ELF  M+   + PD+I+++ VL+ACSH G V +G  YF
Sbjct: 404 DVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYF 463

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
           +SM + +GI+P ++HY CMVD+LGRAG + EAE+ I +MPM PD  +   LL ACR+H N
Sbjct: 464 NSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGN 523

Query: 324 AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE 383
             + +R    LIE D  + G Y+LLSNIY      E A+++R+ M +R IK+ PGCS IE
Sbjct: 524 LVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIE 583

Query: 384 LDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYH 443
           + GVVHEF+ GD SH ++ EIY+  +++++++K+ GY  +   V+FD++E+EKE  +  H
Sbjct: 584 VGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAGYVPDKSEVLFDMDEKEKENELSLH 643

Query: 444 SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
           SEKLA+AFGL+ T PG+ IR+VKN+R+CSDCHSAMK +S+V+ R+I +RDR  +HHF  G
Sbjct: 644 SEKLAIAFGLLSTTPGTPIRVVKNLRVCSDCHSAMKFISEVYNREIIVRDRNRFHHFTKG 703

Query: 504 SCSCLEYW 511
           SCSC ++W
Sbjct: 704 SCSCRDFW 711



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 100/219 (45%), Gaps = 4/219 (1%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           GS+  A  VFNQ+P  +  +   +I G+     P++A+  ++ M    L+P+     SL 
Sbjct: 88  GSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLF 147

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
            +C   G L  G  ++ +  K     D+ +   L++MY+ CG +  A +VF    +K V 
Sbjct: 148 KSC---GVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVV 204

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
           ++ + I   A      EA +LF  M+   + P+ I+ + VL+AC+    +E      H  
Sbjct: 205 SWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETA-KQVHKY 263

Query: 267 FDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMK 305
            D  GI       + ++D+  + G    A +    MP K
Sbjct: 264 IDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEK 302


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 229/498 (45%), Positives = 325/498 (65%), Gaps = 8/498 (1%)

Query: 22  SVCGRVRD---ARWVFDESDDLDVVSW----NSMINGYVRNGEILEGLKLFDKMPQRND- 73
           S C RV +    RWV   +  + V  +    N++I+ Y   GEI++  ++FD   +  D 
Sbjct: 278 SACSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDL 337

Query: 74  VSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL 133
           +SWNS++ G +R GS+ DA  +F  MP++ +VSW  +ISG+AQ+    EALALF+EMQ  
Sbjct: 338 ISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLH 397

Query: 134 DLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLA 193
            + P+   LVS +SAC  L  LD G W+++YI +  ++++ IL   LIDMY KCG ++ A
Sbjct: 398 GVRPDETALVSAISACTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENA 457

Query: 194 MQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL 253
           ++VF++  +K VS + + I GLAMNG   ++  +F +MK  G  P+ I+++ VL AC H+
Sbjct: 458 LEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLNMFADMKKTGTVPNEITFMGVLGACRHM 517

Query: 254 GWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGT 313
           G V  G +YF+SM   H I+  + HY CMVDLLGRAGLL+EAE  I SMPM PD   WG 
Sbjct: 518 GLVNDGRHYFNSMIHEHKIEANIKHYGCMVDLLGRAGLLKEAEELIDSMPMAPDVATWGA 577

Query: 314 LLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKI 373
           LLGACR HR+ EMG+R+G  LI+   +HDG ++LLSNIY       N  E+R  M +  +
Sbjct: 578 LLGACRKHRDNEMGERLGRKLIQLQPDHDGFHVLLSNIYASKGNWGNVLEIRGIMAQHGV 637

Query: 374 KRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEE 433
            + PGCS+IE +G VHEFLAGD++H +  +I    + +  K+K  GY   T  V  DI+E
Sbjct: 638 VKTPGCSMIEANGTVHEFLAGDKTHPQINDIEHMLDVVAAKLKIEGYVPTTSEVSLDIDE 697

Query: 434 EEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRD 493
           EEKET +  HSEKLA+AFGLI   P + IR+ KN+RIC+DCH+ +KL+SK F R I +RD
Sbjct: 698 EEKETALFRHSEKLAVAFGLITISPPTPIRVTKNLRICNDCHTVVKLISKAFDRDIVVRD 757

Query: 494 RKHYHHFEDGSCSCLEYW 511
           R  +HHF+ G+CSC+++W
Sbjct: 758 RHRFHHFKHGACSCMDFW 775



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 109/348 (31%), Positives = 187/348 (53%), Gaps = 35/348 (10%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           V + F  DV+V+N+L+  Y+VCG V  AR VF+ES  LD+VSWN+++ GYV+ GE+ E  
Sbjct: 132 VSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYVQAGEVEEAE 191

Query: 63  KLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQM--PKRSLVSWVVLISGFAQNGRP 120
           ++F+ MP+RN ++ NS++    R G V+ A R+FN +   +R +VSW  ++S + QN   
Sbjct: 192 RVFEGMPERNTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSCYEQNEMG 251

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK--------- 171
           +EAL LF EM+   +  +  ++VS LSAC+++  ++ G WV+    K  ++         
Sbjct: 252 EEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVEDYVSLKNAL 311

Query: 172 -----------------------LDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAY 208
                                  LD I   ++I  Y +CGSI  A  +F+S  +KDV ++
Sbjct: 312 IHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSW 371

Query: 209 TSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD 268
           ++ I G A +    EA  LF+ M+  G+ PD  + ++ +SAC+HL  ++ G  + H+   
Sbjct: 372 SAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLDLG-KWIHAYIS 430

Query: 269 VHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLG 316
            + ++  +     ++D+  + G +E A     +M  K  +     +LG
Sbjct: 431 RNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILG 478



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 12/157 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           + +N    +V +  +LI  Y  CG V +A  VF   ++  V +WN++I G   NG + + 
Sbjct: 429 ISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMNGSVEQS 488

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQM-----PKRSLVSWVVLIS 112
           L +F  M +     N++++  +LG     G V+D    FN M      + ++  +  ++ 
Sbjct: 489 LNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKHYGCMVD 548

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
              + G  KEA  L   + S+ + P+ A   +LL AC
Sbjct: 549 LLGRAGLLKEAEEL---IDSMPMAPDVATWGALLGAC 582



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 111/248 (44%), Gaps = 13/248 (5%)

Query: 94  RVFNQMPKRSLVSWVVLISG--FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           R+FN +   +  +W  ++    + QN  P +AL  ++   +   +P+S     LL  CA 
Sbjct: 59  RIFNHLRNPNTFTWNTIMRAHLYLQNS-PHQALLHYKLFLASHAKPDSYTYPILLQCCAA 117

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSA 211
             +   G  ++++        D  +   L+++YA CGS+  A +VF      D+ ++ + 
Sbjct: 118 RVSEFEGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTL 177

Query: 212 IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG 271
           + G    G   EA  +FE M  +    ++I+  ++++     G VEK    F+    V G
Sbjct: 178 LAGYVQAGEVEEAERVFEGMPER----NTIASNSMIALFGRKGCVEKARRIFNG---VRG 230

Query: 272 IKPELDHYACMVDLLGRAGLLEEAENFIASMP---MKPDNVIWGTLLGACRVHRNAEMGQ 328
            + ++  ++ MV    +  + EEA      M    +  D V+  + L AC    N EMG+
Sbjct: 231 RERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGR 290

Query: 329 RIGNMLIE 336
            +  + ++
Sbjct: 291 WVHGLAVK 298


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 228/503 (45%), Positives = 329/503 (65%), Gaps = 7/503 (1%)

Query: 16  SLIQFYSVCGRVRDA-------RWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM 68
           +L+   S C +++D        +++     + +++  N +I+ +   GE+ E   +FD M
Sbjct: 210 TLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNM 269

Query: 69  PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFR 128
             R+ +SW SI+ G    G +D A + F+Q+P+R  VSW  +I G+ +  R  EALALFR
Sbjct: 270 KNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFR 329

Query: 129 EMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCG 188
           EMQ  +++P+   +VS+L+ACA LGAL+ G WV +YI K  IK D+ +  ALIDMY KCG
Sbjct: 330 EMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCG 389

Query: 189 SIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248
           ++  A +VF     KD   +T+ I GLA+NGH  EA  +F NM    I+PD I+YI VL 
Sbjct: 390 NVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDEITYIGVLC 449

Query: 249 ACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDN 308
           AC+H G VEKG  +F SM   HGIKP + HY CMVDLLGRAG LEEA   I +MP+KP++
Sbjct: 450 ACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLEEAHEVIVNMPVKPNS 509

Query: 309 VIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTM 368
           ++WG+LLGACRVH+N ++ +     ++E +  +   Y+LL NIY    + EN  +VRK M
Sbjct: 510 IVWGSLLGACRVHKNVQLAEMAAKQILELEPENGAVYVLLCNIYAACKRWENLRQVRKLM 569

Query: 369 RKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVM 428
            +R IK+ PGCSL+EL+G V+EF+AGD+SH +++EIY   E +++ +   GY+ +T  V 
Sbjct: 570 MERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIYAKLENMMQDLIKAGYSPDTSEVF 629

Query: 429 FDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRK 488
            D+ EE+KET +  HSEKLA+A+ LI + PG  IRIVKN+R+C DCH   KLVS+ + R+
Sbjct: 630 LDLGEEDKETALYRHSEKLAIAYALISSGPGITIRIVKNLRMCVDCHHMAKLVSEAYNRE 689

Query: 489 ISIRDRKHYHHFEDGSCSCLEYW 511
           + +RD+  +HHF  GSCSC  +W
Sbjct: 690 LIVRDKTRFHHFRHGSCSCNNFW 712



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 104/413 (25%), Positives = 177/413 (42%), Gaps = 74/413 (17%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSV--CGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEIL 59
            +K   + D   +  +I F      G++  AR VFD      +  WN+MI GY R     
Sbjct: 30  TIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDAIPQPTLFIWNTMIKGYSRINHPQ 89

Query: 60  EGLKLFDKMPQRN----DVSWNSILGGLVR------------------FGS--------- 88
            G+ ++  M   N      ++  +L G  R                  F S         
Sbjct: 90  NGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLLNHAVKHGFDSNLFVQKAFI 149

Query: 89  --------VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
                   VD A +VF+      +V+W +++SG+ +  + K++  LF EM+   + PNS 
Sbjct: 150 HMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSV 209

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
            LV +LSAC++L  L+ G  +Y YI    ++ + IL   LIDM+A CG +D A  VF + 
Sbjct: 210 TLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNM 269

Query: 201 GDKDVSAYTSAIFGLAMNGHS-------------------------------IEAFELFE 229
            ++DV ++TS + G A  G                                 IEA  LF 
Sbjct: 270 KNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFR 329

Query: 230 NMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRA 289
            M+   + PD  + +++L+AC+HLG +E G  +  +  D + IK +      ++D+  + 
Sbjct: 330 EMQMSNVKPDEFTMVSILTACAHLGALELG-EWVKTYIDKNSIKNDTFVGNALIDMYFKC 388

Query: 290 GLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD 342
           G + +A+     M  K D   W  ++    ++ + E    + + +IE+    D
Sbjct: 389 GNVGKAKKVFKEMHHK-DKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPD 440


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 231/508 (45%), Positives = 341/508 (67%), Gaps = 1/508 (0%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V K     ++FV+NSL+  Y   G    A+ +FDE    DVVSWN++I+GY  +G + + 
Sbjct: 153 VTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKA 212

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
             +FD M ++N VSW++++ G  R G++++A ++F  MP R++VSW  +I+G+AQN +  
Sbjct: 213 RMVFDGMMEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNEKYA 272

Query: 122 EALALFREMQSLD-LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
           +A+ LFR+MQ    L PN   LVS+LSACA LGALD G W++ +I++  I++   L  AL
Sbjct: 273 DAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNAL 332

Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
            DMYAKCG +  A  VFH   ++DV +++  I GLAM G++ EAF  F  M   G+ P+ 
Sbjct: 333 ADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPND 392

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
           IS++ +L+AC+H G V+KG  YF  M  V+GI P+++HY C+VDLL RAG L++AE+ I 
Sbjct: 393 ISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLIN 452

Query: 301 SMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGEN 360
           SMPM+P+ ++WG LLG CR++++AE G+R+   ++E D NH G  + L+N+Y    + ++
Sbjct: 453 SMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASMGRLDD 512

Query: 361 AEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGY 420
           A   R  MR  K  + PGCS IE++  V+EF  GD SH ++  IY    E+  K+K  GY
Sbjct: 513 AASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQSLRIYSMIRELKWKMKVAGY 572

Query: 421 NVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKL 480
             +T  V+ +I+EEEKE  +  HSEKLALAFGLI T  G+ IRIVKN+R+C+DCH A+K+
Sbjct: 573 KPKTDLVIHNIDEEEKEDALSTHSEKLALAFGLINTSEGTTIRIVKNLRVCNDCHDAIKI 632

Query: 481 VSKVFKRKISIRDRKHYHHFEDGSCSCL 508
           +SK+ +R+I +RDR  +HHF+DG CS L
Sbjct: 633 ISKIVEREIVVRDRSRFHHFKDGKCSWL 660



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 61/295 (20%), Positives = 119/295 (40%), Gaps = 68/295 (23%)

Query: 87  GSVDDACRVFNQ-MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA--ILV 143
           G++  +  +FN  +   ++ ++  L+  F+Q+      ++ F     L   PN       
Sbjct: 72  GNLRHSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFT 131

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS-------------- 189
           S+L ACA L  +  G  V+ ++ K   + +  +  +L+D+Y K G               
Sbjct: 132 SVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVR 191

Query: 190 -----------------IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMK 232
                            +D A  VF    +K++ ++++ I G A  G+  EA +LFENM 
Sbjct: 192 DVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARVGNLEEARQLFENMP 251

Query: 233 SK--------------------------------GISPDSISYIAVLSACSHLGWVEKGF 260
            +                                G++P+ ++ ++VLSAC+HLG ++ G 
Sbjct: 252 MRNVVSWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLG- 310

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
            + H     + I+  L     + D+  + G + EA+     M  + D + W  ++
Sbjct: 311 KWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHER-DVISWSIII 364


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 235/550 (42%), Positives = 345/550 (62%), Gaps = 39/550 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +VVK  F  DVFVK SL+  Y+ CG + DA  VFD+  D +VVSW ++I+GY+  G+  E
Sbjct: 137 LVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFRE 196

Query: 61  GLKLFDKMPQ---------------------------------------RNDVSWNSILG 81
            + +F ++ +                                       RN     S++ 
Sbjct: 197 AIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVD 256

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G+++ A  VF+ MP++ +VSW  +I G+A NG PKEA+ LF +MQ  +++P+   
Sbjct: 257 MYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYT 316

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           +V +LSACA+LGAL+ G WV   + +     + +L  ALID+YAKCGS+  A +VF    
Sbjct: 317 VVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMK 376

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
           +KD   + + I GLAMNG+   +F LF  ++  GI PD  ++I +L  C+H G V++G  
Sbjct: 377 EKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRR 436

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           YF+SM+    + P ++HY CMVDLLGRAGLL+EA   I +MPM+ + ++WG LLGACR+H
Sbjct: 437 YFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIH 496

Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
           R+ ++ +     LIE +  + G Y+LLSNIY   LK + A +VR +M +++I++ PGCS 
Sbjct: 497 RDTQLAELALKQLIELEPWNSGNYVLLSNIYSANLKWDEAAKVRLSMNEKRIQKPPGCSW 556

Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIG 441
           IE+DG+VHEFL GD+ H  +++IY   +E+ KK+K  GY   T  V+FDIEEEEKE  +G
Sbjct: 557 IEVDGIVHEFLVGDKYHPLSEKIYAKLDELTKKMKVAGYVPTTDFVLFDIEEEEKEHFLG 616

Query: 442 YHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
            HSEKLA+AFGLI   P +VIR+VKN+R+C DCH A+KL+S +  R+I++RD   +H F 
Sbjct: 617 CHSEKLAIAFGLISATPTAVIRVVKNLRVCGDCHMAIKLISSITGREITVRDNNRFHCFR 676

Query: 502 DGSCSCLEYW 511
           +GSCSC +YW
Sbjct: 677 EGSCSCNDYW 686



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 113/221 (51%), Gaps = 2/221 (0%)

Query: 95  VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA 154
           +F+Q+ + ++  W  +I G   N    +A+  +  M+S    PN+     +L ACA+L  
Sbjct: 68  LFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACARLLD 127

Query: 155 LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFG 214
           L  G  +++ + K     D  +  +L+ +YAKCG ++ A +VF    DK+V ++T+ I G
Sbjct: 128 LQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISG 187

Query: 215 LAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP 274
               G   EA ++F  +    ++PDS + + VLSAC+ LG +  G  + H      G+  
Sbjct: 188 YIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSG-EWIHKCIMEMGMVR 246

Query: 275 ELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
            +     +VD+  + G +E+A +    MP K D V WG ++
Sbjct: 247 NVFVGTSLVDMYAKCGNMEKARSVFDGMPEK-DIVSWGAMI 286


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 228/510 (44%), Positives = 332/510 (65%), Gaps = 31/510 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K  F  +++  NSL+  YS  G ++ AR +FD+ D  D VSWNSMI+GY + GEI   
Sbjct: 144 IIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMA 203

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
            ++F+ MP+RN +SW S++ G V                                 G+PK
Sbjct: 204 YEIFNHMPERNIISWTSMISGCV-------------------------------GAGKPK 232

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
           EAL LF  MQ+  ++ ++  LVS L ACA LG LD G W+++YI+K  I++D IL   LI
Sbjct: 233 EALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLI 292

Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
           DMYAKCG ++ A++VF    +K VS +T+ I G A++G   EA E F  M++ G+ P+ +
Sbjct: 293 DMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQM 352

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
           ++  +L+ACSH G V +    F SM  +HG KP ++HY CMVDLLGRAGLL+EAE  I +
Sbjct: 353 TFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIEN 412

Query: 302 MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361
           MP+KP+  IWG LL AC +H N E+G++IG +LI+ D  H GRYI L++I+    +   A
Sbjct: 413 MPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQA 472

Query: 362 EEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYN 421
             VR+ M+++ + + PGCS+I ++G  HEFLAGD SH + +EI    E+IV++++  GY 
Sbjct: 473 ARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGYK 532

Query: 422 VETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLV 481
            +   ++ D+E++EKET I +HSEKLA+ FGLI TKPG  IRIVKN+R+C DCH+ +KL+
Sbjct: 533 PKLGDLLLDLEDKEKETAIHHHSEKLAVTFGLISTKPGMTIRIVKNLRVCEDCHTVIKLI 592

Query: 482 SKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           SKV+ R+I +RDR  +H F+DG+C+C +YW
Sbjct: 593 SKVYAREILMRDRTRFHLFKDGNCTCGDYW 622



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/334 (21%), Positives = 142/334 (42%), Gaps = 68/334 (20%)

Query: 19  QFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNS 78
           +   + G++     + DE     ++++ +  N    +G +     +FD++ + N   WN+
Sbjct: 33  ELRQIHGQMLKTGLILDEIPASKLLAFCASPN----SGSLAYARTVFDRIFRPNTFMWNT 88

Query: 79  ILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPN 138
                                          +I G++ +  P+EAL L+  M    +  N
Sbjct: 89  -------------------------------MIRGYSNSKEPEEALLLYHHMLYHSVPHN 117

Query: 139 SAILVSLLSACAQLGALDYGNWVYSYIQK-----------------------KCIKL--- 172
           +     LL AC+ + A +    ++++I K                       K  +L   
Sbjct: 118 AYTFPFLLKACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFD 177

Query: 173 -----DSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFEL 227
                D++   ++ID Y KCG I++A ++F+   ++++ ++TS I G    G   EA  L
Sbjct: 178 QVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNL 237

Query: 228 FENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLG 287
           F  M++ GI  D+++ ++ L AC+ LG +++G  + H+    H I+ +      ++D+  
Sbjct: 238 FHRMQTAGIKLDNVALVSTLQACADLGVLDQG-KWIHAYIKKHEIEIDPILGCVLIDMYA 296

Query: 288 RAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           + G LEEA      M  K  +V W  ++    +H
Sbjct: 297 KCGDLEEAIEVFRKMEEKGVSV-WTAMISGYAIH 329


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 228/510 (44%), Positives = 332/510 (65%), Gaps = 31/510 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K  F  +++  NSL+  YS  G ++ AR +FD+ D  D VSWNSMI+GY + GEI   
Sbjct: 144 IIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMA 203

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
            ++F+ MP+RN +SW S++ G V                                 G+PK
Sbjct: 204 YEIFNHMPERNIISWTSMISGCV-------------------------------GAGKPK 232

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
           EAL LF  MQ+  ++ ++  LVS L ACA LG LD G W+++YI+K  I++D IL   LI
Sbjct: 233 EALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLI 292

Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
           DMYAKCG ++ A++VF    +K VS +T+ I G A++G   EA E F  M++ G+ P+ +
Sbjct: 293 DMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQM 352

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
           ++  +L+ACSH G V +    F SM  +HG KP ++HY CMVDLLGRAGLL+EAE  I +
Sbjct: 353 TFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIEN 412

Query: 302 MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361
           MP+KP+  IWG LL AC +H N E+G++IG +LI+ D  H GRYI L++I+    +   A
Sbjct: 413 MPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQA 472

Query: 362 EEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYN 421
             VR+ M+++ + + PGCS+I ++G  HEFLAGD SH + +EI    E+IV++++  GY 
Sbjct: 473 ARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGYK 532

Query: 422 VETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLV 481
            +   ++ D+E++EKET I +HSEKLA+ FGLI TKPG  IRIVKN+R+C DCH+ +KL+
Sbjct: 533 PKLGDLLLDLEDKEKETAIHHHSEKLAVTFGLISTKPGMTIRIVKNLRVCEDCHTVIKLI 592

Query: 482 SKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           SKV+ R+I +RDR  +H F+DG+C+C +YW
Sbjct: 593 SKVYAREILMRDRTRFHLFKDGNCTCGDYW 622



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/334 (21%), Positives = 143/334 (42%), Gaps = 68/334 (20%)

Query: 19  QFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNS 78
           +   + G++     + DE     ++++ +  N    +G +     +FD++ + N   WN+
Sbjct: 33  ELRQIHGQMLKTGLILDEIPASKLLAFCASPN----SGSLAYARTVFDRIFRPNTFMWNT 88

Query: 79  ILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPN 138
                                          +I G++ +  P+EAL L+  M    +  N
Sbjct: 89  -------------------------------MIRGYSNSKEPEEALLLYHHMLYHSVPHN 117

Query: 139 SAILVSLLSACAQLGALDYGNWVYSYIQK-----------------------KCIKL--- 172
           +     LL AC+ + AL+    ++++I K                       K  +L   
Sbjct: 118 AYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFD 177

Query: 173 -----DSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFEL 227
                D++   ++ID Y KCG I++A ++F+   ++++ ++TS I G    G   EA  L
Sbjct: 178 QVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNL 237

Query: 228 FENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLG 287
           F  M++ GI  D+++ ++ L AC+ LG +++G  + H+    H I+ +      ++D+  
Sbjct: 238 FHRMQTAGIKLDNVALVSTLQACADLGVLDQG-KWIHAYIKKHEIEIDPILGCVLIDMYA 296

Query: 288 RAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           + G LEEA      M  K  +V W  ++    +H
Sbjct: 297 KCGDLEEAIEVFRKMEEKGVSV-WTAMISGYAIH 329


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 226/510 (44%), Positives = 333/510 (65%), Gaps = 31/510 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++++ F  DV+V+NSL+  YS  G ++ A +VF     LDVV                  
Sbjct: 139 IIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVV------------------ 180

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
                        SW S++ G ++ G V  A ++F++MP+++LV+W V+ISG+A+N    
Sbjct: 181 -------------SWTSMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFD 227

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
           +A+ L+  +QS  +  N  ++VS++++CA LGAL+ G   + YI +  + ++ IL  AL+
Sbjct: 228 KAIELYFLLQSEGVHANETVMVSVIASCAHLGALELGERAHDYILRNKMTVNLILGTALV 287

Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
           DMYA+CGSID A+ VF     +D  ++T+ I G AM+G++ +A E F  M+  G++P  I
Sbjct: 288 DMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREI 347

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
           ++ AVLSACSH G VE+G   F SM   + I+P L+HY CMVDLLGRAG L EAE F+  
Sbjct: 348 TFTAVLSACSHGGLVERGLELFESMKRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNE 407

Query: 302 MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361
           MPMKP+  IWG LLGACR+H+N+E+ +R G  LIE    H G Y+LLSNIY  T K EN 
Sbjct: 408 MPMKPNAPIWGALLGACRIHKNSEIAERAGKTLIELKPEHSGYYVLLSNIYARTNKWENV 467

Query: 362 EEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYN 421
           E +R+ M++R + + PG +L E+DG VH+F  GD++H + Q+I + WEEI+ KI+  GY 
Sbjct: 468 ENIRQMMKERGVVKPPGYTLFEMDGKVHKFTIGDKTHPEIQQIERMWEEILGKIRLAGYT 527

Query: 422 VETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLV 481
                 +FDI+EEEKE+ I  HSEKLA+A+ ++ TK    IRIVKN+R+C DCH+A KL+
Sbjct: 528 GNNDDALFDIDEEEKESNIHRHSEKLAIAYAIMRTKGHDPIRIVKNLRVCEDCHTATKLI 587

Query: 482 SKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           SKV++R++ +RDR  +HHF+ G+CSC++YW
Sbjct: 588 SKVYERELIVRDRNRFHHFKGGACSCMDYW 617



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 115/268 (42%), Gaps = 33/268 (12%)

Query: 89  VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148
           +D A +VF Q+   +L  +   I GF+ +  P ++   + + +   L P++     L+ A
Sbjct: 63  LDYAAQVFYQIQNPNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKA 122

Query: 149 CAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAY 208
           C Q G+LD G   +  I +     D  +  +L+ MY+  G I  A  VF      DV ++
Sbjct: 123 CTQKGSLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSW 182

Query: 209 TSAIFGLAMNGHSIEAFELFENM-------------------------------KSKGIS 237
           TS + G   +G    A +LF+ M                               +S+G+ 
Sbjct: 183 TSMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVH 242

Query: 238 PDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAEN 297
            +    ++V+++C+HLG +E G    H     + +   L     +VD+  R G +++A  
Sbjct: 243 ANETVMVSVIASCAHLGALELG-ERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIW 301

Query: 298 FIASMPMKPDNVIWGTLLGACRVHRNAE 325
               +P + D + W TL+    +H  AE
Sbjct: 302 VFDQLPGR-DALSWTTLIAGFAMHGYAE 328



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 33/153 (21%), Positives = 68/153 (44%), Gaps = 4/153 (2%)

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           +S L +C  L  L     +++++ +     D    + LI +      +D A QVF+   +
Sbjct: 19  LSFLESCTTLSHLKI---IHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQIQN 75

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
            ++  Y S I G + +    ++F  +   K  G+ PD+++Y  ++ AC+  G ++ G   
Sbjct: 76  PNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQA 135

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA 295
            H     HG   ++     +V +    G ++ A
Sbjct: 136 -HGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSA 167


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 238/550 (43%), Positives = 341/550 (62%), Gaps = 39/550 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +++K+ F  + FV+N+LIQ Y+ CG++  AR VFD   +  +V+WNSM++GY +NG   E
Sbjct: 146 LILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDE 205

Query: 61  GLKLFDKMPQ---------------------------------------RNDVSWNSILG 81
            +KLF K+ +                                       RN+    S++ 
Sbjct: 206 VVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLID 265

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G VD A ++F++M KR +V+W  +ISG+AQ  R KEAL LF EMQ  ++ PN   
Sbjct: 266 MYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVT 325

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           +VS+L +CA LGA + G WV+ YI+KK +KL   L   LID YAKCG ID +++VF    
Sbjct: 326 MVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMS 385

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
            K+V  +T+ I GLA NG    A E F +M    + P+ +++I VLSACSH   V++G +
Sbjct: 386 FKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQGRH 445

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            F+SM     I+P ++HY CMVD+LGRAG LEEA  FI +MP  P+ V+W TLL +CR H
Sbjct: 446 LFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLASCRAH 505

Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
           +N EM ++    +   +  H G YILLSN Y    + E+A  VR  +++++IK+ PGCSL
Sbjct: 506 KNIEMAEKSLEHITRLEPAHSGDYILLSNTYALVGRVEDAIRVRSLIKEKEIKKIPGCSL 565

Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIG 441
           IELDGVVHEF + D  H+ ++EI+   ++++K+IK  GY   T     + EEE KET + 
Sbjct: 566 IELDGVVHEFFSEDGEHKHSKEIHDALDKMMKQIKRLGYVPNTDDARLEAEEESKETSVS 625

Query: 442 YHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
           +HSEKLA+A+GLI T P + IRI KN+R+C DCH+A K +S+VF+R I +RDR  +HHF+
Sbjct: 626 HHSEKLAIAYGLIRTSPRTTIRISKNLRMCRDCHNATKFISQVFERMIIVRDRNRFHHFK 685

Query: 502 DGSCSCLEYW 511
           DG CSC +YW
Sbjct: 686 DGLCSCNDYW 695



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 145/286 (50%), Gaps = 3/286 (1%)

Query: 53  VRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLIS 112
           +R GE +  L L     + N+   N+++      G +  A  VF+ MP+RS+V+W  ++S
Sbjct: 137 LREGEQVHALILKSGF-KSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLS 195

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKL 172
           G+ +NG   E + LFR++  L +E +   ++S+L AC +L  L+ G  +  YI  K ++ 
Sbjct: 196 GYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRR 255

Query: 173 DSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMK 232
           ++ L  +LIDMYAKCG +D A ++F     +DV A+++ I G A      EA  LF  M+
Sbjct: 256 NNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQ 315

Query: 233 SKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLL 292
              + P+ ++ ++VL +C+ LG  E G  + H       +K  +     ++D   + G +
Sbjct: 316 KGNVYPNEVTMVSVLYSCAMLGAYETG-KWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYI 374

Query: 293 EEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338
           + +      M  K +   W  L+     +   +M     + ++E+D
Sbjct: 375 DRSVEVFKEMSFK-NVFTWTALIQGLANNGEGKMALEFFSSMLEND 419



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 109/237 (45%), Gaps = 2/237 (0%)

Query: 81  GGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
             L+   ++D A  +FN + K    ++ V+I G A    P  AL LF++M    ++ +  
Sbjct: 63  AALLLPDTIDYALSIFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKF 122

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
              S+L AC+++ AL  G  V++ I K   K +  +   LI MYA CG I +A  VF   
Sbjct: 123 TFSSVLKACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGM 182

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
            ++ + A+ S + G   NG   E  +LF  +    I  D ++ I+VL AC  L  +E G 
Sbjct: 183 PERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGE 242

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
                +    G++        ++D+  + G ++ A      M  K D V W  ++  
Sbjct: 243 LIGEYIVS-KGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMD-KRDVVAWSAMISG 297


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 243/583 (41%), Positives = 355/583 (60%), Gaps = 72/583 (12%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           MV+K SF  D+F+ NSLI FYS  G +  A  VF +  + D+VSWNSMI+G+V+ G   E
Sbjct: 156 MVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEE 215

Query: 61  GLKLFDKM------PQR---------------------------------NDVSWNSILG 81
            L+LF +M      P R                                 N +  N++L 
Sbjct: 216 ALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLILSNAMLD 275

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFA-------------------------- 115
             V+ GS++DA R+F++M ++ +VSW  +I G+A                          
Sbjct: 276 MYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNAL 335

Query: 116 -----QNGRPKEALALFREMQ-SLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC 169
                QNG+PKEALA+FRE+Q + + +PN   L S L+ACAQLGA+D G W++ YI+K+ 
Sbjct: 336 ISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQG 395

Query: 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFE 229
           IKL+  +  +LIDMY+KCG ++ A++VF+S   +DV  +++ I GLAM+GH   A +LF 
Sbjct: 396 IKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFS 455

Query: 230 NMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRA 289
            M+   + P+++++  +L ACSH G V++G  +F+ M  V+G+ P   HYACMVD+LGRA
Sbjct: 456 KMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSKHYACMVDILGRA 515

Query: 290 GLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLS 349
           G LEEA   I  MP+ P   +WG LLGACR++ N E+ +   + L+E+D N+ G Y+LLS
Sbjct: 516 GCLEEAVELIEKMPIVPSASVWGALLGACRIYGNVELAEMACSRLLETDSNNHGAYVLLS 575

Query: 350 NIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWE 409
           NIY +  K +    +R+ M+   +++ PGCS IE++G++HEFL GD SH  + EIY   +
Sbjct: 576 NIYAKAGKWDCVSRLRQHMKVSGLEKEPGCSSIEVNGIIHEFLVGDNSHPLSTEIYSKLD 635

Query: 410 EIVKKIKNYGY-NVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNI 468
           EIV +IK+ GY + E+  + F  EE  KE  +  HSEKLA+A+GLI  +P   IRIVKN+
Sbjct: 636 EIVARIKSTGYVSDESHLLQFVEEEYMKEHALNLHSEKLAIAYGLIRMEPSQPIRIVKNL 695

Query: 469 RICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           R+C DCHS  KL+SK++ R I +RDR  +HHF  G+CSC++YW
Sbjct: 696 RVCGDCHSVAKLISKLYNRDILLRDRYRFHHFSGGNCSCMDYW 738



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 97/361 (26%), Positives = 170/361 (47%), Gaps = 74/361 (20%)

Query: 33  VFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM---PQRNDVSW------------N 77
           VFD+    ++ +WN++I  +  + + ++GL +F +M    QR   S+            +
Sbjct: 86  VFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVS 145

Query: 78  SILGG---------------------LVRF----GSVDDACRVFNQMPKRSLVSWVVLIS 112
           S+L G                     L+ F    G +D A  VF+++ ++ +VSW  +IS
Sbjct: 146 SLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMIS 205

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKL 172
           GF Q G P+EAL LF+ M+  +  PN   +V +LSACA+   L++G W   YI++  I +
Sbjct: 206 GFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDI 265

Query: 173 DSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLA---------------- 216
           + IL  A++DMY KCGS++ A ++F    +KD+ ++T+ I G A                
Sbjct: 266 NLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMP 325

Query: 217 ---------------MNGHSIEAFELFENMK-SKGISPDSISYIAVLSACSHLGWVEKGF 260
                           NG   EA  +F  ++ +K   P+ ++  + L+AC+ LG ++ G 
Sbjct: 326 REDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLG- 384

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
            + H      GIK        ++D+  + G LE+A     S+  + D  +W  ++    +
Sbjct: 385 GWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERR-DVFVWSAMIAGLAM 443

Query: 321 H 321
           H
Sbjct: 444 H 444



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 124/252 (49%), Gaps = 3/252 (1%)

Query: 88  SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM-QSLDLEPNSAILVSLL 146
           S+D AC+VF+Q+P+ +L +W  LI  FA + +P + L +F +M       PNS     ++
Sbjct: 79  SLDYACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVI 138

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
            A  ++ +L  G  ++  + K     D  +  +LI  Y+  G +D A  VF    +KD+ 
Sbjct: 139 KAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIV 198

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
           ++ S I G    G   EA +LF+ MK +   P+ ++ + VLSAC+    +E G +     
Sbjct: 199 SWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWAC-DY 257

Query: 267 FDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEM 326
            + +GI   L     M+D+  + G LE+A      M  K D V W T++       + + 
Sbjct: 258 IERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEK-DIVSWTTMIDGYAKVGDYDA 316

Query: 327 GQRIGNMLIESD 338
            +R+ +++   D
Sbjct: 317 ARRVFDVMPRED 328


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 233/510 (45%), Positives = 334/510 (65%), Gaps = 1/510 (0%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V  N F Y   ++   I +    G+   A  V       D  S N++I+ YV    + + 
Sbjct: 116 VSPNKFTYPPLIRACCIDYAIEEGKQIHAH-VLKFGFGADGFSLNNLIHMYVNFQSLEQA 174

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
            ++FD MPQR+ VSW S++ G  ++G VD A  VF  MP+R+ VSW  +I+ + Q+ R  
Sbjct: 175 RRVFDNMPQRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLH 234

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
           EA ALF  M+  ++  +  +  S+LSAC  LGAL+ G W++ YI+K  I+LDS L   +I
Sbjct: 235 EAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVI 294

Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
           DMY KCG ++ A +VF+    K +S++   I GLAM+G    A ELF+ M+ + ++PD I
Sbjct: 295 DMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGI 354

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
           +++ VLSAC+H G VE+G +YF  M +V G+KP ++H+ CMVDLLGRAGLLEEA   I  
Sbjct: 355 TFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINE 414

Query: 302 MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361
           MP+ PD  + G L+GACR+H N E+G++IG  +IE + ++ GRY+LL+N+Y    + E+ 
Sbjct: 415 MPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDV 474

Query: 362 EEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYN 421
            +VRK M  R +K+APG S+IE +  V EF+AG R+H + +EIY   +EI++ I++ GY 
Sbjct: 475 AKVRKLMNDRGVKKAPGFSMIESESGVDEFIAGGRAHPQAKEIYAKLDEILETIRSIGYV 534

Query: 422 VETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLV 481
            +T  V+ DI+EEEKE  + YHSEKLA+AFGL+ TKPG  +RI KN+RIC DCH A KL+
Sbjct: 535 PDTDGVLHDIDEEEKENPLYYHSEKLAIAFGLLKTKPGETLRISKNLRICRDCHQASKLI 594

Query: 482 SKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           SKV+ R+I IRDR  +HHF  G CSC +YW
Sbjct: 595 SKVYDREIIIRDRNRFHHFRMGGCSCKDYW 624



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 123/286 (43%), Gaps = 39/286 (13%)

Query: 77  NSILGGLVRF------GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM 130
           N  +G +++F      G ++ A  VF+++P      +  +  G+ +    +  + ++  M
Sbjct: 52  NDAMGRVIKFCAISKSGDLNYALEVFDKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRM 111

Query: 131 QSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSI 190
               + PN      L+ AC    A++ G  +++++ K     D      LI MY    S+
Sbjct: 112 LHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSL 171

Query: 191 DLAMQVFHSYGDKDVSAYTSAIFGLAMNG---------------HSI------------- 222
           + A +VF +   +DV ++TS I G +  G               +S+             
Sbjct: 172 EQARRVFDNMPQRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSN 231

Query: 223 ---EAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHY 279
              EAF LF+ M+ + +  D     ++LSAC+ LG +E+G  + H   +  GI+ +    
Sbjct: 232 RLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQG-KWIHGYIEKSGIELDSKLA 290

Query: 280 ACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAE 325
             ++D+  + G LE+A      +P K  +  W  ++G   +H   E
Sbjct: 291 TTVIDMYCKCGCLEKASEVFNELPQKGISS-WNCMIGGLAMHGKGE 335


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 233/550 (42%), Positives = 343/550 (62%), Gaps = 39/550 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++VK  + +DVFVK SL+  Y  C    DA  VFD+  D +VVSW ++I GY+ +G   E
Sbjct: 139 LLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFRE 198

Query: 61  GLKLFDKMPQ---------------------------------------RNDVSWNSILG 81
            +  F K+ +                                       RN     S+L 
Sbjct: 199 AIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLD 258

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
             V+ G+++ A  +F+ MP++ +VSW  +I G+A NG P++AL LF +MQS +L+P+   
Sbjct: 259 MYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYT 318

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           +V +LSACA LGALD G W  S + +     + +L  ALIDMY+KCGS+  A ++F +  
Sbjct: 319 MVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMK 378

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
            KD   + + + GL+MNGH+   F LF  ++  GI PD  ++I +L  C+H G+V +G  
Sbjct: 379 KKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQ 438

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           +F++M  V  + P ++HY CMVDLLGRAGLL EA   I +MPMKP+ V+WG LLG C++H
Sbjct: 439 FFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLH 498

Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
           ++  + +++   LIE +  + G Y+ LSNIY    + E AE++R TM++++I++   CS 
Sbjct: 499 KDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSW 558

Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIG 441
           IE+DG+VHEFL GD+SH  +++IY   +E+ +++K  G+   T  V+FDIEEEEKE  +G
Sbjct: 559 IEIDGIVHEFLVGDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVLFDIEEEEKEHFLG 618

Query: 442 YHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
           YHSEKLA+AFGLI + P  VIR+VKN+R+C DCH A+KL+SK+ KR+I IRD   +H F 
Sbjct: 619 YHSEKLAVAFGLIASPPNHVIRVVKNLRVCGDCHDAIKLISKITKREIIIRDTNRFHTFI 678

Query: 502 DGSCSCLEYW 511
           DGSCSC +YW
Sbjct: 679 DGSCSCRDYW 688



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 121/239 (50%), Gaps = 2/239 (0%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136
           N IL   + FGS + +  VF+Q+ + ++  W  +I G        +A+ L+  M+     
Sbjct: 52  NLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFL 111

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
           PN+  +  +L ACA+   +  G  ++S + K     D  +  +L+ +Y KC + D A++V
Sbjct: 112 PNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKV 171

Query: 197 FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWV 256
           F    DK+V ++T+ I G   +GH  EA   F+ +   G+ PDS S + VL+AC+ LG  
Sbjct: 172 FDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDC 231

Query: 257 EKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
             G +    + D  G+   +     ++D+  + G LE A    ++MP K D V W T++
Sbjct: 232 TSGEWIDRYISD-SGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEK-DIVSWSTMI 288


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 232/514 (45%), Positives = 333/514 (64%), Gaps = 4/514 (0%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLD----VVSWNSMINGYVRNGE 57
           V+K    +D FV+ SL+  Y   G +     +FDES   +    ++ WN +ING  + G+
Sbjct: 164 VMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKVGD 223

Query: 58  ILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQN 117
           + +   LF+ MP+RN  SWNS++ G VR G +D A  +F QMP++++VSW  +I+GF+QN
Sbjct: 224 LSKAASLFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQN 283

Query: 118 GRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILC 177
           G  ++AL++F  M    + PN   +VS L AC ++GAL  G  +++Y+     +L+  + 
Sbjct: 284 GDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIG 343

Query: 178 AALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGIS 237
            AL+DMYAKCG+I  A +VF     KD+  ++  I+G A++G   +A + F  MKS GI+
Sbjct: 344 TALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGIN 403

Query: 238 PDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAEN 297
           PD + ++A+L+ACSH G V++G  +F SM   + I+P + HY  +VDLLGRAG L+EA +
Sbjct: 404 PDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALS 463

Query: 298 FIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLK 357
           FI SMP+ PD VIWG L  ACR H+N EM +     L++ +  H G Y+ LSN+Y    +
Sbjct: 464 FIQSMPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYAAVGR 523

Query: 358 GENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKN 417
            E+ E VR  M+ R +++ PG S IE++G VH F+AGD +H + +EI    EEI    K 
Sbjct: 524 WEDVERVRTLMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAHVRAEEISLKLEEITASAKQ 583

Query: 418 YGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSA 477
            GY  ET  V+ +IEEEEKE  +G HSEKLALAFGLI T PGS IRIVKN+R+C DCHS 
Sbjct: 584 EGYMPETAWVLHNIEEEEKEDALGSHSEKLALAFGLISTAPGSTIRIVKNLRVCGDCHSM 643

Query: 478 MKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           MK  SK+ +R+I +RD K +HHF+DG+CSC +YW
Sbjct: 644 MKYASKLSRREIILRDIKRFHHFKDGTCSCGDYW 677



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/300 (19%), Positives = 112/300 (37%), Gaps = 68/300 (22%)

Query: 88  SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLS 147
           S+D A  +F      +L  +  LI G A+N R + +++ F  M  L + P+   L  +L 
Sbjct: 87  SLDYALSIFRCFDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLK 146

Query: 148 ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ------------ 195
           + A L  +  G  ++  + K  ++ DS +  +L+DMY K G +   +Q            
Sbjct: 147 SVAALVDVGLGRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAE 206

Query: 196 -----------------------VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMK 232
                                  +F +  +++  ++ S I G   NG    A ELF  M 
Sbjct: 207 SILLWNVLINGCCKVGDLSKAASLFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMP 266

Query: 233 SK-------------------------------GISPDSISYIAVLSACSHLGWVEKGFY 261
            K                               G+ P+ ++ ++ L AC+ +G ++ G  
Sbjct: 267 EKNVVSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVG-E 325

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
             H+    +G +        +VD+  + G ++ A         K D + W  ++    +H
Sbjct: 326 RIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGK-DLLTWSVMIWGWAIH 384


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 233/550 (42%), Positives = 343/550 (62%), Gaps = 39/550 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++VK  + +DVFVK SL+  Y  C    DA  VFD+  D +VVSW ++I GY+ +G   E
Sbjct: 139 LLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFRE 198

Query: 61  GLKLFDKMPQ---------------------------------------RNDVSWNSILG 81
            +  F K+ +                                       RN     S+L 
Sbjct: 199 AIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLD 258

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
             V+ G+++ A  +F+ MP++ +VSW  +I G+A NG P++AL LF +MQS +L+P+   
Sbjct: 259 MYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYT 318

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           +V +LSACA LGALD G W  S + +     + +L  ALIDMY+KCGS+  A ++F +  
Sbjct: 319 MVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMK 378

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
            KD   + + + GL+MNGH+   F LF  ++  GI PD  ++I +L  C+H G+V +G  
Sbjct: 379 RKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQ 438

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           +F++M  V  + P ++HY CMVDLLGRAGLL EA   I +MPMKP+ V+WG LLG C++H
Sbjct: 439 FFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLH 498

Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
           ++  + +++   LIE +  + G Y+ LSNIY    + E AE++R TM++++I++   CS 
Sbjct: 499 KDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSW 558

Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIG 441
           IE+DG+VHEFL GD+SH  +++IY   +E+ +++K  G+   T  V+FDIEEEEKE  +G
Sbjct: 559 IEIDGIVHEFLVGDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVLFDIEEEEKEHFLG 618

Query: 442 YHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
           YHSEKLA+AFGLI + P  VIR+VKN+R+C DCH A+KL+SK+ KR+I IRD   +H F 
Sbjct: 619 YHSEKLAVAFGLIASPPNHVIRVVKNLRVCGDCHDAIKLISKITKREIIIRDTNRFHTFI 678

Query: 502 DGSCSCLEYW 511
           DGSCSC +YW
Sbjct: 679 DGSCSCRDYW 688



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 121/239 (50%), Gaps = 2/239 (0%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136
           N IL   + FGS + +  VF+Q+ + ++  W  +I G        +A+ L+  M+     
Sbjct: 52  NLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFL 111

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
           PN+  +  +L ACA+   +  G  ++S + K     D  +  +L+ +Y KC + D A++V
Sbjct: 112 PNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKV 171

Query: 197 FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWV 256
           F    DK+V ++T+ I G   +GH  EA   F+ +   G+ PDS S + VL+AC+ LG  
Sbjct: 172 FDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDC 231

Query: 257 EKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
             G +    + D  G+   +     ++D+  + G LE A    ++MP K D V W T++
Sbjct: 232 TSGEWIDRYISD-SGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEK-DIVSWSTMI 288


>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 225/495 (45%), Positives = 329/495 (66%)

Query: 17  LIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSW 76
           L + Y+  GR+  +  +F  + +  V  W ++I+G+   G+++   +LFD MP+++ VS 
Sbjct: 68  LQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGDVVSAQQLFDTMPEKSLVSL 127

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136
            ++L    + G +D A  +F+ M +R  V W V+I G+ QNG P EAL LFR M     +
Sbjct: 128 TAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAK 187

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
           PN   ++S+LSAC QLGAL+ G WV+SYI+   I+ +  +  AL+DMY+KCGS++ A  V
Sbjct: 188 PNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLV 247

Query: 197 FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWV 256
           F    DKDV A+ S I G AM+G S EA +LF++M   G+ P +I++I +LSAC H GWV
Sbjct: 248 FDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWV 307

Query: 257 EKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLG 316
            +G+  F+ M D +GI+P+++HY CMV+LLGRAG +E+A   + +M ++PD V+WGTLLG
Sbjct: 308 TEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLG 367

Query: 317 ACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRA 376
           ACR+H    +G++I  +L++ +  + G YILLSNIY      +    +R  M+   +K+ 
Sbjct: 368 ACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKE 427

Query: 377 PGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEK 436
           PGCS IE++  VHEFLAG  +H K +EIY   EEI   +K++GY  +T  V+ DI E EK
Sbjct: 428 PGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEK 487

Query: 437 ETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKH 496
           E  +  HSEKLA+AFGLI T+PG+ I+IVKN+R+C+DCH   KL+SK+  RKI +RDR  
Sbjct: 488 ERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNR 547

Query: 497 YHHFEDGSCSCLEYW 511
           +HHF +GSCSC +YW
Sbjct: 548 FHHFVNGSCSCGDYW 562



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 99/198 (50%), Gaps = 17/198 (8%)

Query: 5   NSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKL 64
           N   ++V V  +L+  YS CG + DAR VFD+ DD DVV+WNSMI GY  +G   E L+L
Sbjct: 219 NGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQL 278

Query: 65  FDKMPQ----RNDVSWNSILGGLVRFGSVDDACRVFNQM-------PKRSLVSWVVLISG 113
           F  M +      ++++  IL      G V +   +FN+M       PK  +  +  +++ 
Sbjct: 279 FKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPK--IEHYGCMVNL 336

Query: 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD 173
             + G  ++A  L + M   ++EP+  +  +LL AC   G +  G  +   +  + +  +
Sbjct: 337 LGRAGHVEQAYELVKNM---NIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLA-N 392

Query: 174 SILCAALIDMYAKCGSID 191
           S     L ++YA  G+ D
Sbjct: 393 SGTYILLSNIYAAVGNWD 410


>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 649

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 222/472 (47%), Positives = 322/472 (68%), Gaps = 1/472 (0%)

Query: 41  DVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMP 100
           DV + NS+IN Y   G       LFD++P+ + VSWNS++ G  + G +D A  +F +M 
Sbjct: 178 DVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMV 237

Query: 101 KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNW 160
           +++ +SW  +ISG+ Q G  KEAL LF EMQ+ D+EP++  L + LSACAQLGAL+ G W
Sbjct: 238 EKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKW 297

Query: 161 VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGH 220
           ++SY+ K  I++DS+L   LIDMYAKCG +  A++VF +   K V A+T+ I G A +GH
Sbjct: 298 IHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALISGYAYHGH 357

Query: 221 SIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA 280
             EA   F  M+  GI P+ I++  VL+ACS+ G VE+G   F++M   + +KP ++HY 
Sbjct: 358 GREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGKLIFYNMERDYNLKPTIEHYG 417

Query: 281 CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQN 340
           C+VDLL RAGLL+EA+ FI  MP+KP+ VIWG LL ACR+H+N E+G+ IG +LI  D  
Sbjct: 418 CVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPY 477

Query: 341 HDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEK 400
           H GRY+  +NI+    K + A E R+ M+++ + + PGCS I L+G  HEFLAGDRSH +
Sbjct: 478 HGGRYVHKANIHAMGKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPE 537

Query: 401 TQEIYQFWEEIVKKIKNYGYNVE-TRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPG 459
            ++I   W+ + +K++  GY  E    ++  ++++E+ET++  HSEKLA+ +GLI TKPG
Sbjct: 538 IEKIQSKWKIMRRKLEENGYVPELEDMLLDLVDDDERETIVHQHSEKLAITYGLIKTKPG 597

Query: 460 SVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           + IRI+KN+R+C DCH   KL+SK++KR I +RDR  +HHF DG CSC +YW
Sbjct: 598 TTIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 649



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 106/232 (45%), Gaps = 32/232 (13%)

Query: 95  VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA 154
           VF+   +     W ++I GF+ +  P+ +L L++ M       N+    SLL AC+ L A
Sbjct: 100 VFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSA 159

Query: 155 LDYGNWVYSYIQK-------------------------------KCIKLDSILCAALIDM 183
           L+    +++ I K                               +  K D++   ++I  
Sbjct: 160 LEETTQIHAQITKLGYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKG 219

Query: 184 YAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISY 243
           YAK G +D+A+ +F    +K+  ++T+ I G    G   EA +LF  M++  + PD++S 
Sbjct: 220 YAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSL 279

Query: 244 IAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA 295
              LSAC+ LG +E+G  + HS      I+ +      ++D+  + G + EA
Sbjct: 280 ANALSACAQLGALEQG-KWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEA 330


>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 585

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 230/506 (45%), Positives = 325/506 (64%), Gaps = 2/506 (0%)

Query: 8   AYDVFVKNSLIQFY--SVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLF 65
           A D+FV+ +L++ Y  +  G +  AR  FDE+   DV   N M+  YV  GE+ E  K+F
Sbjct: 80  AADLFVRTALVEMYAKTAAGEIALARAAFDEAPRRDVFLCNVMLAAYVARGEVAEARKVF 139

Query: 66  DKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALA 125
           D M  R+ VSWN+++ G    G V  A  +F+    R   SW  +IS +A+    KEAL 
Sbjct: 140 DGMSGRDLVSWNTMIHGYAVRGDVGMAREIFDGTRDRDAFSWSSMISAYAKGRCSKEALE 199

Query: 126 LFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYA 185
           L+REM+   + P+   +VS+LSAC+ +GAL  G  V+ +++   +++D  L  AL+DMYA
Sbjct: 200 LWREMRVAGVAPDCISMVSVLSACSAMGALAIGAEVHRFVESNRVEVDMKLGTALVDMYA 259

Query: 186 KCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIA 245
           KCG I+ +++VFH+   KDV  ++S I GLA +G   +A  LF  M S+G+ P+ I++I 
Sbjct: 260 KCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGLGHDALSLFSEMISQGLQPNEITFIG 319

Query: 246 VLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMK 305
           VL AC+H+G V  G  YF SM DVHG+ P ++HY CMVDLLGRAG +EEA   I SM  K
Sbjct: 320 VLIACTHVGLVNDGKKYFSSMSDVHGVVPRMEHYGCMVDLLGRAGHVEEAMELIRSMTFK 379

Query: 306 PDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVR 365
           PD +IW TLLGACR+H+N E+ +     L   D   DG Y+LLSNIY +    E   E+R
Sbjct: 380 PDPIIWRTLLGACRIHKNVEIAEEAMAKLKVLDPLADGHYVLLSNIYAQANSWEGVAEMR 439

Query: 366 KTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETR 425
           KT+R+  I+R PG S IE +  VHEF++GDRSH + +EIY+  EE++ +++  GY   T 
Sbjct: 440 KTIRRENIQRVPGRSSIEWENTVHEFVSGDRSHPRIEEIYKMLEEMMDRLRQAGYRPMTS 499

Query: 426 SVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVF 485
            V+ DI+E+ K+  +  HSEKLA+AFGL+ T   S +RI KN+R C DCHSA+KL+S  +
Sbjct: 500 LVLQDIDEQSKKRALAEHSEKLAIAFGLLVTPARSTLRITKNLRACEDCHSAIKLISLAY 559

Query: 486 KRKISIRDRKHYHHFEDGSCSCLEYW 511
            RK+ +RDR  +HHF +G CSC +YW
Sbjct: 560 DRKLIVRDRNRFHHFSEGQCSCKDYW 585



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 16/159 (10%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V  N    D+ +  +L+  Y+ CG + ++  VF      DV++W+SMI G   +G   + 
Sbjct: 239 VESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGLGHDA 298

Query: 62  LKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQM-------PKRSLVSWVVL 110
           L LF +M     Q N++++  +L      G V+D  + F+ M       P+  +  +  +
Sbjct: 299 LSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSDVHGVVPR--MEHYGCM 356

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
           +    + G  +EA+ L R   S+  +P+  I  +LL AC
Sbjct: 357 VDLLGRAGHVEEAMELIR---SMTFKPDPIIWRTLLGAC 392


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 228/505 (45%), Positives = 327/505 (64%), Gaps = 9/505 (1%)

Query: 16  SLIQFYSVCGRVRD---ARWVFD----ESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM 68
           +++   S C +  D    RWV      +   +D+   N+M++ Y + G + +  KLFD+M
Sbjct: 229 TMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEM 288

Query: 69  PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFR 128
           P+R+  SW  +L G  + G  D A  VFN MP + + +W VLIS + QNG+PKEALA+F 
Sbjct: 289 PERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFN 348

Query: 129 EMQ-SLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC 187
           E+Q S   +P+   LVS LSACAQLGA+D G W++ YI+++ I L+  L ++L+DMYAKC
Sbjct: 349 ELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGIVLNCHLISSLVDMYAKC 408

Query: 188 GSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVL 247
           GS++ A++VF+S  ++DV  +++ I GL M+G    A +LF  M+   + P+S+++  VL
Sbjct: 409 GSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNVL 468

Query: 248 SACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPD 307
            ACSH G V++G  +FH M  V+G+ PE+ HYACMVD+LGRAG LEEA   I  M   P 
Sbjct: 469 CACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYACMVDILGRAGFLEEAMELINEMSTTPS 528

Query: 308 NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKT 367
             +WG LLGAC +H N E+G+   + L++ +  + G  +LLSNIY +T + E   E+RK 
Sbjct: 529 ASVWGALLGACSLHMNVELGELASDQLLKLEPRNHGAIVLLSNIYAKTGRWEKVSELRKL 588

Query: 368 MRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSV 427
           MR  ++K+ PGCS IE +G VHEFL GD +H  +  IY   EEI  K+K+ GY      +
Sbjct: 589 MRDTELKKEPGCSSIEANGNVHEFLVGDNTHPLSSNIYSKLEEIATKLKSVGYEPNKSHL 648

Query: 428 MFDIEEEE-KETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFK 486
           +  IEE++ KE  +  HSEKLA+AFGL+   P   IR+VKN+RIC DCH+  KLVS+V+ 
Sbjct: 649 LQLIEEDDLKEQALSLHSEKLAIAFGLVTLAPSQPIRVVKNLRICGDCHAFAKLVSRVYD 708

Query: 487 RKISIRDRKHYHHFEDGSCSCLEYW 511
           R I +RDR  +HHF DG CSC++YW
Sbjct: 709 RDILLRDRYRFHHFRDGHCSCMDYW 733



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 104/364 (28%), Positives = 169/364 (46%), Gaps = 74/364 (20%)

Query: 30  ARWVFDESDDLDVVSWNSMINGYVRNGEILEG----LKLFDK---MPQRNDVSWN----- 77
           AR +FD+    ++ +WN++I  Y  + +  +     L L DK   +P +    +      
Sbjct: 78  ARNLFDQIPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAAS 137

Query: 78  ------------------------SILGGLVRF----GSVDDACRVFNQMPKRSLVSWVV 109
                                    IL  LVRF    G +  A R+F  +  + +VSW  
Sbjct: 138 ELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNS 197

Query: 110 LISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC 169
           +IS FAQ   P++AL LF +M+  ++ PNS  +V +LSACA+   L++G WV SYI++K 
Sbjct: 198 MISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKG 257

Query: 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLA------------- 216
           IK+D  LC A++DMY KCGS+D A ++F    ++DV ++T  + G A             
Sbjct: 258 IKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFN 317

Query: 217 ------------------MNGHSIEAFELFENMK-SKGISPDSISYIAVLSACSHLGWVE 257
                              NG   EA  +F  ++ SK   PD ++ ++ LSAC+ LG ++
Sbjct: 318 AMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAID 377

Query: 258 KGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
            G  + H      GI       + +VD+  + G LE+A     S+  + D  +W  ++  
Sbjct: 378 LG-GWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEER-DVYVWSAMIAG 435

Query: 318 CRVH 321
             +H
Sbjct: 436 LGMH 439



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 118/236 (50%), Gaps = 5/236 (2%)

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM--QSLDLEPNS 139
            L  F ++D A  +F+Q+P+ +L +W  LI  +A +  P ++  +F ++  +  DL PN 
Sbjct: 68  ALSSFSTLDYARNLFDQIPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDL-PNK 126

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
                ++ A ++L A   G  V+    K    +D  +  +L+  Y  CG + +A ++F  
Sbjct: 127 FTFPFVIKAASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKG 186

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
              KDV ++ S I   A      +A ELF  M+ + + P+S++ + VLSAC+    +E G
Sbjct: 187 ISCKDVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFG 246

Query: 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
             +  S  +  GIK +L     M+D+  + G +++A+     MP + D   W  +L
Sbjct: 247 -RWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPER-DVFSWTIML 300


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 230/506 (45%), Positives = 329/506 (65%), Gaps = 11/506 (2%)

Query: 16  SLIQFYSVCGRVRD---ARWV--FDESDDL--DVVSWNSMINGYVRNGEILEGLKLFDKM 68
           +++   S C +  D    RWV  + E + +   +   N+M++ Y + G + +  +LFDKM
Sbjct: 239 TMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKM 298

Query: 69  PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFR 128
           P+++ VSW ++L G  + G  D A  +F+ MP + + +W  LIS + Q G+PKEAL LF 
Sbjct: 299 PEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFH 358

Query: 129 EMQ-SLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC 187
           E+Q S   +P+   LVS LSACAQLGA+D G W++ YI+K+ +KL+  L  +LIDMY KC
Sbjct: 359 ELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKC 418

Query: 188 GSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVL 247
           G +  A+ VFHS   KDV  +++ I GLAM+GH  +A  LF  M+   + P+++++  +L
Sbjct: 419 GDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNIL 478

Query: 248 SACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPD 307
            ACSH+G VE+G  +F+ M  V+G+ P + HYACMVD+LGRAGLLEEA   I  MPM P 
Sbjct: 479 CACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPA 538

Query: 308 NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKT 367
             +WG LLGAC +H N  + ++  + LIE +  + G Y+LLSNIY +  K +    +RK 
Sbjct: 539 ASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKL 598

Query: 368 MRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSV 427
           MR   +K+ PGCS IE+DG+VHEFL GD SH   ++IY   +EIV +++  GY V  +S 
Sbjct: 599 MRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAKLDEIVARLETIGY-VPNKSH 657

Query: 428 MFDIEEEE--KETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVF 485
           +  + EEE  KE  +  HSEKLA+AFGLI T     IRIVKN+R+C DCHS  KLVSK++
Sbjct: 658 LLQLVEEEDVKEQALFLHSEKLAIAFGLISTGQSQPIRIVKNLRVCGDCHSVAKLVSKLY 717

Query: 486 KRKISIRDRKHYHHFEDGSCSCLEYW 511
            R+I +RDR  +HHF +G CSC++YW
Sbjct: 718 DREILLRDRYRFHHFREGHCSCMDYW 743



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 178/394 (45%), Gaps = 76/394 (19%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCG--RVRDARWVFDESDDLDVVSWNSMINGYVRNGEIL 59
           +++    +D F  + LI   ++     +  A+ VFD+    ++ +WN++I  Y  +    
Sbjct: 58  MLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPH 117

Query: 60  EGLKLFDKM-------PQRNDVSW---------------------------------NSI 79
           + L +F +M       P +    +                                 NS+
Sbjct: 118 QSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSL 177

Query: 80  LGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS 139
           +    + G +    RVF  +P+R +VSW  +I+ F Q G P+EAL LF+EM++ +++PN 
Sbjct: 178 IHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNG 237

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
             +V +LSACA+    ++G WV+SYI++  I     L  A++DMY KCGS++ A ++F  
Sbjct: 238 ITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDK 297

Query: 200 YGDKDVSAYTSAIFGLA-------------------------------MNGHSIEAFELF 228
             +KD+ ++T+ + G A                                 G   EA ELF
Sbjct: 298 MPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELF 357

Query: 229 ENMK-SKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLG 287
             ++ SK   PD ++ ++ LSAC+ LG ++ G  + H      G+K        ++D+  
Sbjct: 358 HELQLSKTAKPDEVTLVSTLSACAQLGAMDLG-GWIHVYIKKQGMKLNCHLTTSLIDMYC 416

Query: 288 RAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           + G L++A     S+  K D  +W  ++    +H
Sbjct: 417 KCGDLQKALMVFHSVERK-DVFVWSAMIAGLAMH 449


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 214/466 (45%), Positives = 319/466 (68%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N++++ Y    ++    K+FD M  R+ VSW S+L GL R G VD+A  +F++MP+R  V
Sbjct: 162 NALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTV 221

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           SW  +I G+    R +EAL +FREMQ  ++  +   +VS+++ACAQLGAL+ G WV  Y+
Sbjct: 222 SWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYM 281

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
            ++ IK+D+ +  ALIDMY+KCGSI+ A+ VF     +D   +T+ I GLA+NG+  EA 
Sbjct: 282 SRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAI 341

Query: 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL 285
           E+F  M     +PD +++I VL+AC+H G V+KG  +F SM + + I P + HY C++DL
Sbjct: 342 EMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNVVHYGCIIDL 401

Query: 286 LGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRY 345
           LGRAG + EA + I  MPM P++ IWGTLL ACRVH N+E+G+ +   L+E D  +   Y
Sbjct: 402 LGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVAERLLELDPENSMVY 461

Query: 346 ILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIY 405
           ILLSNIY +  + E+   +R  + ++ IK+ PGCSLIE+DG++HEF+AGD+SH  ++EIY
Sbjct: 462 ILLSNIYAKCNRWEDVRRLRHAIMEKGIKKEPGCSLIEMDGIIHEFVAGDQSHPMSKEIY 521

Query: 406 QFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIV 465
              E I+  + N GY  +   V  ++ E+EK+ V+ +HSEKLA+AF L+ +KP +VIRIV
Sbjct: 522 SKLESIISDLNNVGYFPDVTEVFVEVAEKEKKKVLYWHSEKLAIAFALLSSKPNTVIRIV 581

Query: 466 KNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           KN+R+C DCH+A+KL+S+++ R++ +RDR  +HHF  G CSC +YW
Sbjct: 582 KNLRMCLDCHNAIKLISRLYGREVVVRDRTRFHHFRHGFCSCKDYW 627



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 102/244 (41%), Gaps = 36/244 (14%)

Query: 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALD--YGNWVY 162
           V+W  LISG  + GR  E+   F +M      P     VS+LSAC + G  D   G  V+
Sbjct: 88  VAWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGK-GTRDVLLGMQVH 146

Query: 163 SYIQKKCIKLDSILCAALIDMYAKC-------------------------------GSID 191
             +    +  D  +  AL+DMYA+C                               G +D
Sbjct: 147 GRVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVD 206

Query: 192 LAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS 251
            A  +F    ++D  ++T+ I G        EA E+F  M+   +S D  + ++V++AC+
Sbjct: 207 EARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACA 266

Query: 252 HLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIW 311
            LG +E G  +        GIK +      ++D+  + G +E A +    M  + D   W
Sbjct: 267 QLGALEMG-EWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHR-DKFTW 324

Query: 312 GTLL 315
             ++
Sbjct: 325 TAII 328



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 98/214 (45%), Gaps = 19/214 (8%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           +     D FV N+LI  YS CG +  A  VF      D  +W ++I G   NG   E ++
Sbjct: 283 RQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIE 342

Query: 64  LFDKM----PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLISGF 114
           +F +M       ++V++  +L      G VD     F  M +      ++V +  +I   
Sbjct: 343 MFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNVVHYGCIIDLL 402

Query: 115 AQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD- 173
            + G+  EAL    +M    + PNS I  +LL+AC   G  + G  V     ++ ++LD 
Sbjct: 403 GRAGKITEALDTIDQMP---MTPNSTIWGTLLAACRVHGNSEIGELV----AERLLELDP 455

Query: 174 --SILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
             S++   L ++YAKC   +   ++ H+  +K +
Sbjct: 456 ENSMVYILLSNIYAKCNRWEDVRRLRHAIMEKGI 489


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 239/547 (43%), Positives = 340/547 (62%), Gaps = 39/547 (7%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           K  F  D FV NSLI  Y+ CG V  A  +F       V++WN+MI GYV+NG+  E ++
Sbjct: 199 KRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVVE 258

Query: 64  LFDKMPQR----NDVSWNSI-----------LG----------GLVRF------------ 86
           +F  M +     ++V+  S+           LG          G++R             
Sbjct: 259 MFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVDMYA 318

Query: 87  --GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
             G +D A R+F++M  R +V+W  +ISG+ Q+ R +EALA+F EMQ  ++ PN   +VS
Sbjct: 319 KCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVS 378

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           +LSACA LGAL+ G WV+SYI++K + L  IL  AL+D YAKCG I  A++ F S   ++
Sbjct: 379 VLSACAVLGALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRN 438

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
              +T+ I G+A NG S EA ELF +M    I P  +++I VL ACSH   VE+G  +F 
Sbjct: 439 TWTWTALIKGMASNGRSREALELFSSMLEANIEPTDVTFIGVLLACSHGCLVEEGRRHFT 498

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
           SM   +GI P ++HY CMVDLLGRAGL++EA  FI +MP++P+ V+W  LL AC VH+N 
Sbjct: 499 SMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSACTVHKNV 558

Query: 325 EMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIEL 384
           E+G+     ++  D  H G YILLSN Y    + +NA  VRK M+++ +++ PGCSLIEL
Sbjct: 559 EIGEEALKQIVPLDPCHSGNYILLSNTYASVGQWKNAAMVRKEMKEKGVEKIPGCSLIEL 618

Query: 385 DGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHS 444
           +G + EF A D  H +  EIY+   E+++ IK  GY   T     D++E EK+  + +HS
Sbjct: 619 EGTIFEFFAEDSEHPQLTEIYEKVHEMIENIKMVGYIPNTADARLDVDEYEKQVSVSHHS 678

Query: 445 EKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGS 504
           EKLA+AFGL+ ++PG+ IR+ KN+R+C DCHSA KL+SKV+ R+I +RDR  +HHF+DG 
Sbjct: 679 EKLAIAFGLMKSRPGATIRLSKNLRVCIDCHSATKLISKVYNREIIVRDRNRFHHFKDGL 738

Query: 505 CSCLEYW 511
           CSC +YW
Sbjct: 739 CSCNDYW 745



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 108/227 (47%), Gaps = 5/227 (2%)

Query: 92  ACRVFN--QMPKRSLVSWVVLISGFAQNGRPKEALALFREM-QSLDLEPNSAILVSLLSA 148
           A R+F     P RS  S+ +LI  F + G P++AL LF EM     + P+   + + + +
Sbjct: 121 AIRLFRLGPHPPRSARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKS 180

Query: 149 CAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAY 208
           C+++  L  G  V +Y  K+   +D  +  +LI MYA CG +  A  +FH+   K V A+
Sbjct: 181 CSRMCDLSVGRGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAW 240

Query: 209 TSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD 268
            + I G   NG   E  E+F+ M       D ++ ++V +AC  LG    G  +     +
Sbjct: 241 NAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLG-QWIAEYAE 299

Query: 269 VHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
             G+    +    +VD+  + G L++A      M  + D V W  ++
Sbjct: 300 EKGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSR-DVVAWSAMI 345


>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
          Length = 492

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 230/492 (46%), Positives = 317/492 (64%)

Query: 20  FYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSI 79
            Y+  GRV  AR  FDE+   DV   N M+  YV   E+ E  K+FD MP R+ VSWN++
Sbjct: 1   MYAKAGRVDLARDAFDEAPLRDVFLCNVMLAAYVSRSEVAEARKVFDGMPMRDLVSWNTM 60

Query: 80  LGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS 139
           + G    G V  A  +F+    R   SW  +IS +A++ R KEAL L+REM +  + P+ 
Sbjct: 61  IHGYAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDC 120

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
             LVS++SAC+ LGAL  G  V+ +++   I+LD  L  ALIDMYAKCG I+ A +VF  
Sbjct: 121 ITLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDR 180

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
             +KDV  ++S I GLA +G   E+  LF  M S+G+ P+ ++++ VL AC+H+G V +G
Sbjct: 181 MPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEG 240

Query: 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACR 319
             YF SM +VHGI+P ++HY CMVDLLGR+G +EEA   I SM  +PD +IW  LLGACR
Sbjct: 241 KKYFRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACR 300

Query: 320 VHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGC 379
           +H+N E+ +     L   D   DG Y+LLSNIY +    E   E+RKT+R+  I+R PG 
Sbjct: 301 IHKNVEIAEEAMAKLRVLDPLGDGHYVLLSNIYAQANSWEGVAEMRKTIRRDNIQRIPGR 360

Query: 380 SLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETV 439
           S IE D  +HEF++GDR H +++EIY+  EE++ ++K  GY   T  V+ DI+E+ KE  
Sbjct: 361 SSIEWDEKIHEFVSGDRLHPRSKEIYRVLEEMMDRLKQAGYKPMTGLVLQDIDEQSKERS 420

Query: 440 IGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHH 499
           +  HSEKLA+AF L+ T   S IRI KN+R C DCHSAMKL+S V+ RK+ +RDR  +HH
Sbjct: 421 LAEHSEKLAIAFALLTTPARSTIRITKNLRACEDCHSAMKLISLVYDRKLIVRDRNRFHH 480

Query: 500 FEDGSCSCLEYW 511
           F +G CSC +YW
Sbjct: 481 FSEGQCSCKDYW 492



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 12/157 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V  N    D+ +  +LI  Y+ CG +  A+ VFD   + DV +W+SMI G   +G   E 
Sbjct: 146 VESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHGLGHES 205

Query: 62  LKLFDKM----PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVV-----LIS 112
           L LF KM     + N V++  +L      G V +  + F  M +   +   V     ++ 
Sbjct: 206 LSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYGCMVD 265

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
              ++G  +EA  L R   S+  EP++ I  +LL AC
Sbjct: 266 LLGRSGHVEEARQLIR---SMTFEPDTIIWRALLGAC 299


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 229/511 (44%), Positives = 343/511 (67%), Gaps = 16/511 (3%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + VK     D FV +++++ Y  CG + DA  +F              ++G        +
Sbjct: 137 LAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYR---------RVFVDG-------CD 180

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
           G++   +    + V WN ++ G VR G ++ A  +F++MP+RS+VSW V+I+G+AQ+G  
Sbjct: 181 GIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHF 240

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
           KEA+ +FREMQ  ++ PN   LVS+L A ++LGAL+ G WV+ Y  +  I +D +L +AL
Sbjct: 241 KEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSAL 300

Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           IDMYAKCGSI+ A+QVF     ++V  +++ I GLAM+G + +  + FE+M+  G+ P  
Sbjct: 301 IDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSD 360

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
           ++YI +LSACSH G V +G ++F  M  V G++P ++HY CMVDLLGRAGLLEE+E  I 
Sbjct: 361 VTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELIL 420

Query: 301 SMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGEN 360
           +MP+KPD+VIW  LLGAC++H N EMG+R+   L+E   +  G Y+ LSNIY      E 
Sbjct: 421 NMPIKPDDVIWKALLGACKMHGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEG 480

Query: 361 AEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGY 420
             +VR  M++  +++ PGCS IELDGV+HEFL  D SH K+++I+   +E+ + +   GY
Sbjct: 481 VAKVRLMMKEMDVRKDPGCSWIELDGVIHEFLVEDDSHPKSKKIHSMLQEMSRNLILVGY 540

Query: 421 NVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKL 480
              T  V+ +++EE+KE+ + YHSEK+A+AFGLI T+P + +RI KN+RIC DCHS++KL
Sbjct: 541 RPNTTQVLTNMDEEDKESSLNYHSEKIAIAFGLISTQPQTPLRITKNLRICEDCHSSIKL 600

Query: 481 VSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           +SK++KRKI +RDRK +HHF +GSCSC++YW
Sbjct: 601 ISKIYKRKIIVRDRKRFHHFVNGSCSCMDYW 631



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 126/297 (42%), Gaps = 57/297 (19%)

Query: 83  LVRFGSVDD------ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM-QSLDL 135
           L+RF +V D      A ++F  M + +  S+  LI   +++  P +AL +F EM +   +
Sbjct: 49  LLRFSAVSDHRDLDYARKIFRSMHRPNCFSYNTLIRALSESNDPCDALLVFIEMVEDCSV 108

Query: 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC-------- 187
           EPN     S+  AC +   L  G  V+    K  +  D  + + ++ MY  C        
Sbjct: 109 EPNCFTFPSVFKACGRAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHR 168

Query: 188 --------------------------------------GSIDLAMQVFHSYGDKDVSAYT 209
                                                 G +++A  +F     + V ++ 
Sbjct: 169 LFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWN 228

Query: 210 SAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG-FYYFHSMFD 268
             I G A +GH  EA E+F  M+   + P+ ++ ++VL A S LG +E G + + +++ +
Sbjct: 229 VMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRN 288

Query: 269 VHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAE 325
             G+   L   + ++D+  + G +E+A      +P K + V W T++    +H  A+
Sbjct: 289 NIGVDDVLG--SALIDMYAKCGSIEKALQVFEGLP-KRNVVTWSTIIAGLAMHGRAK 342


>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 609

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 223/469 (47%), Positives = 326/469 (69%), Gaps = 3/469 (0%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N++I  YV    +++  K+FD  P R+  SWN +L G  R G +D+A ++F++MP++ +V
Sbjct: 141 NALIGMYVNLDFVVDARKVFDWSPNRDMYSWNIMLSGYARLGKMDEARQLFDEMPEKDVV 200

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           SW  +ISG  Q G   EAL +F  M +  + PN   L S L+ACA L ALD G W++ YI
Sbjct: 201 SWTTMISGCLQVGYFMEALDIFHNMLAKGMSPNEYTLASSLAACANLVALDQGRWMHVYI 260

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG--DKDVSAYTSAIFGLAMNGHSIE 223
           +K  I+++  L A LIDMYAKCG ++ A ++F+S     + V  + + I G A++G S E
Sbjct: 261 KKNNIQMNERLLAGLIDMYAKCGELEFASKLFNSNPRLKRKVWPWNAMIGGFAVHGKSKE 320

Query: 224 AFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMV 283
           A E+FE MK + +SP+ ++++A+L+ACSH   VE+G YYF SM   + +KPEL+HY C+V
Sbjct: 321 AIEVFEQMKIEKVSPNKVTFVALLNACSHGNRVEEGRYYFESMASHYRVKPELEHYGCLV 380

Query: 284 DLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDG 343
           DLLGRAG L+EAE  I+SM + PD  IWG LL AC++H++AEMG+R+G ++ E D NH G
Sbjct: 381 DLLGRAGRLKEAEEIISSMHLTPDVAIWGALLSACKIHKDAEMGERVGKIVKELDPNHLG 440

Query: 344 RYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQE 403
            ++LL+NIY  T     A  +R+ + +   K+ PGCS IEL+G+ H+FL GDRSH +T++
Sbjct: 441 CHVLLANIYSLTGNWNEARTLREKIAESGKKKTPGCSSIELNGMFHQFLVGDRSHPQTKQ 500

Query: 404 IYQFWEEIVKKIKNYGYNVETRSVMFDIEE-EEKETVIGYHSEKLALAFGLICTKPGSVI 462
           +Y F +E++ K+K  GY  E+  V+ DI++ E++ET +  HSEKLA+AFGL+ T P + I
Sbjct: 501 LYLFLDEMITKLKIAGYIPESGEVLLDIDDNEDRETALLKHSEKLAIAFGLMNTTPKTPI 560

Query: 463 RIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           RIVKN+R+CSDCH A+K +SKV+ R+I +RDR  YHHF+DG+CSC +YW
Sbjct: 561 RIVKNLRVCSDCHLAIKFISKVYDREIIVRDRIRYHHFKDGTCSCNDYW 609



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 76/159 (47%), Gaps = 14/159 (8%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDL--DVVSWNSMINGYVRNGEIL 59
           + KN+   +  +   LI  Y+ CG +  A  +F+ +  L   V  WN+MI G+  +G+  
Sbjct: 260 IKKNNIQMNERLLAGLIDMYAKCGELEFASKLFNSNPRLKRKVWPWNAMIGGFAVHGKSK 319

Query: 60  EGLKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMP-----KRSLVSWVVL 110
           E +++F++M       N V++ ++L        V++    F  M      K  L  +  L
Sbjct: 320 EAIEVFEQMKIEKVSPNKVTFVALLNACSHGNRVEEGRYYFESMASHYRVKPELEHYGCL 379

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
           +    + GR KEA  +   + S+ L P+ AI  +LLSAC
Sbjct: 380 VDLLGRAGRLKEAEEI---ISSMHLTPDVAIWGALLSAC 415



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 66/301 (21%), Positives = 119/301 (39%), Gaps = 38/301 (12%)

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFA-QNGRPKEALALFREM-QSLDLEPNSAILV 143
           F  +  A  VF+  P+  L  +  +I   A       ++   FR + +   L PN     
Sbjct: 47  FAPISYAHMVFDHFPQPDLFLYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFA 106

Query: 144 SLLSACAQ-LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
                C   +G L+ G  V  +  K  ++ +  +  ALI MY     +  A +VF    +
Sbjct: 107 FAFKGCGSGVGVLE-GEQVRVHAIKLGLENNLFVTNALIGMYVNLDFVVDARKVFDWSPN 165

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMK------------------------------ 232
           +D+ ++   + G A  G   EA +LF+ M                               
Sbjct: 166 RDMYSWNIMLSGYARLGKMDEARQLFDEMPEKDVVSWTTMISGCLQVGYFMEALDIFHNM 225

Query: 233 -SKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGL 291
            +KG+SP+  +  + L+AC++L  +++G  + H     + I+      A ++D+  + G 
Sbjct: 226 LAKGMSPNEYTLASSLAACANLVALDQG-RWMHVYIKKNNIQMNERLLAGLIDMYAKCGE 284

Query: 292 LEEAENFIASMP-MKPDNVIWGTLLGACRVH-RNAEMGQRIGNMLIESDQNHDGRYILLS 349
           LE A     S P +K     W  ++G   VH ++ E  +    M IE    +   ++ L 
Sbjct: 285 LEFASKLFNSNPRLKRKVWPWNAMIGGFAVHGKSKEAIEVFEQMKIEKVSPNKVTFVALL 344

Query: 350 N 350
           N
Sbjct: 345 N 345


>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
 gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 230/511 (45%), Positives = 336/511 (65%), Gaps = 31/511 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VVK     D FV+++L++ Y +CG ++DA  +F ++                     LEG
Sbjct: 149 VVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTR--------------------LEG 188

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
                     N V WN ++ G VR G +  +  +F+ MP +S+VSW V+ISG AQNG  K
Sbjct: 189 ----------NVVLWNVMIDGYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFK 238

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
           EA+ +F +MQ  D+ PN   LVS+L A ++LGA++ G WV+ + +K  I++D +L +ALI
Sbjct: 239 EAIEMFHDMQLGDVPPNYVTLVSVLPAVSRLGAIELGKWVHLFAEKNEIEIDDVLGSALI 298

Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFG-LAMNGHSIEAFELFENMKSKGISPDS 240
           DMY+KCGSID A+QVF    +K      SAI G LAM+G + +A + F  M+  G++P  
Sbjct: 299 DMYSKCGSIDKAVQVFEGIRNKKNPITWSAIIGGLAMHGRARDALDHFWRMQQAGVTPSD 358

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
           + YI VLSACSH G VE+G   ++ M ++ G+ P ++HY CMVDLLGRAG LEEAE  I 
Sbjct: 359 VVYIGVLSACSHAGLVEEGRSIYYHMVNIVGLLPRIEHYGCMVDLLGRAGCLEEAEQLIL 418

Query: 301 SMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGEN 360
           +MP+KPD+VI   LLGAC++H N EMG+RI  +L+    +  G Y+ LSN++      E 
Sbjct: 419 NMPVKPDDVILKALLGACKMHGNIEMGERIAKILMGWYPHDSGSYVALSNMFASEGNWEG 478

Query: 361 AEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGY 420
             +VR  M++  I++ PGCS IELDGV+HEFL  D SH + + I+   EE+  ++++ GY
Sbjct: 479 VVKVRLKMKELDIRKDPGCSWIELDGVIHEFLVEDDSHPRAEGIHSMLEEMSDRLRSVGY 538

Query: 421 NVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKL 480
              T  V+ +++E+EK++ + YHSEK+A+AFGLI T+P + ++IVKN+R+C DCHS++KL
Sbjct: 539 RPNTTQVLLNMDEKEKQSALHYHSEKIAIAFGLISTRPQTPLQIVKNLRVCEDCHSSIKL 598

Query: 481 VSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           VSK++ RKI +RDRK +HHFE+GSCSC++YW
Sbjct: 599 VSKIYNRKIIVRDRKRFHHFENGSCSCMDYW 629



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 120/273 (43%), Gaps = 41/273 (15%)

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPK-------EALALFREMQSLDL-EPNSAILV 143
           A + F+Q+   +  SW  +I   A +           EAL  F  M +  L EPN     
Sbjct: 68  ARKFFSQIHHPNCFSWNTIIRALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFP 127

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDS----------ILCAA-------------- 179
            +L ACA+L  ++ G  ++ ++ K  +  D           ++C A              
Sbjct: 128 CVLKACAKLARIEEGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLE 187

Query: 180 --------LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM 231
                   +ID Y + G +  + ++F S  +K V ++   I G A NGH  EA E+F +M
Sbjct: 188 GNVVLWNVMIDGYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDM 247

Query: 232 KSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGL 291
           +   + P+ ++ ++VL A S LG +E G  + H   + + I+ +    + ++D+  + G 
Sbjct: 248 QLGDVPPNYVTLVSVLPAVSRLGAIELG-KWVHLFAEKNEIEIDDVLGSALIDMYSKCGS 306

Query: 292 LEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
           +++A      +  K + + W  ++G   +H  A
Sbjct: 307 IDKAVQVFEGIRNKKNPITWSAIIGGLAMHGRA 339


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 220/473 (46%), Positives = 317/473 (67%)

Query: 39  DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQ 98
           D D+     +++ Y R G+++   +LFD MP+++ VS  ++L    + G +D A  +F+ 
Sbjct: 156 DSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDG 215

Query: 99  MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
           M +R  V W V+I G+ QNG P EAL LFR M     +PN   ++S+LSAC QLGAL+ G
Sbjct: 216 MEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESG 275

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
            WV+SYI+   I+ +  +  AL+DMY+KCGS++ A  VF    DKDV A+ S I G AM+
Sbjct: 276 RWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMH 335

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDH 278
           G S EA +LF++M   G+ P +I++I +LSAC H GWV +G+  F+ M D +GI+P+++H
Sbjct: 336 GFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEH 395

Query: 279 YACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338
           Y CMV+LLGRAG +E+A   + +M ++PD V+WGTLLGACR+H    +G++I  +L++ +
Sbjct: 396 YGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQN 455

Query: 339 QNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSH 398
             + G YILLSNIY      +    +R  M+   +K+ PGCS IE++  VHEFLAG  +H
Sbjct: 456 LANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNH 515

Query: 399 EKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKP 458
            K +EIY   EEI   +K++GY  +T  V+ DI E EKE  +  HSEKLA+AFGLI T+P
Sbjct: 516 PKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQP 575

Query: 459 GSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           G+ I+IVKN+R+C+DCH   KL+SK+  RKI +RDR  +HHF +GSCSC +YW
Sbjct: 576 GTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 628



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 115/267 (43%), Gaps = 37/267 (13%)

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
            G +D +  +F +    S+  W  +I G A  G  ++AL  + +M +  +EPN+    S+
Sbjct: 75  LGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSI 134

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
           L  C     ++ G  ++S   K     D  +   L+D+YA+ G +  A Q+F +  +K +
Sbjct: 135 LKLC----PIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSL 190

Query: 206 SAYTS-------------------------------AIFGLAMNGHSIEAFELFENMKSK 234
            + T+                                I G   NG   EA  LF  M   
Sbjct: 191 VSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKA 250

Query: 235 GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEE 294
              P+ ++ ++VLSAC  LG +E G  + HS  + +GI+  +     +VD+  + G LE+
Sbjct: 251 KAKPNEVTVLSVLSACGQLGALESG-RWVHSYIENNGIQFNVHVGTALVDMYSKCGSLED 309

Query: 295 AENFIASMPMKPDNVIWGTLLGACRVH 321
           A      +  K D V W +++    +H
Sbjct: 310 ARLVFDKIDDK-DVVAWNSMIVGYAMH 335



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 99/198 (50%), Gaps = 17/198 (8%)

Query: 5   NSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKL 64
           N   ++V V  +L+  YS CG + DAR VFD+ DD DVV+WNSMI GY  +G   E L+L
Sbjct: 285 NGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQL 344

Query: 65  FDKMPQ----RNDVSWNSILGGLVRFGSVDDACRVFNQM-------PKRSLVSWVVLISG 113
           F  M +      ++++  IL      G V +   +FN+M       PK  +  +  +++ 
Sbjct: 345 FKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPK--IEHYGCMVNL 402

Query: 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD 173
             + G  ++A  L + M   ++EP+  +  +LL AC   G +  G  +   +  + +  +
Sbjct: 403 LGRAGHVEQAYELVKNM---NIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLA-N 458

Query: 174 SILCAALIDMYAKCGSID 191
           S     L ++YA  G+ D
Sbjct: 459 SGTYILLSNIYAAVGNWD 476


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 220/473 (46%), Positives = 316/473 (66%)

Query: 39  DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQ 98
           D D+     +++ Y R G+++   +LFD MP+++ VS  ++L    + G +D A  +F+ 
Sbjct: 103 DSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDG 162

Query: 99  MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
           M +R  V W V+I G+ QNG P EAL LFR M     +PN   ++S+LSAC QLGAL+ G
Sbjct: 163 MEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESG 222

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
            WV+SYI+   I+ +  +  AL+DMY+KCGS++ A  VF    DKDV A+ S I G AM 
Sbjct: 223 RWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMX 282

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDH 278
           G S EA +LF++M   G+ P +I++I +LSAC H GWV +G+  F+ M D +GI+P+++H
Sbjct: 283 GFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEH 342

Query: 279 YACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338
           Y CMV+LLGRAG +E+A   + +M ++PD V+WGTLLGACR+H    +G++I  +L++ +
Sbjct: 343 YGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQN 402

Query: 339 QNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSH 398
             + G YILLSNIY      +    +R  M+   +K+ PGCS IE++  VHEFLAG  +H
Sbjct: 403 LANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNH 462

Query: 399 EKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKP 458
            K +EIY   EEI   +K++GY  +T  V+ DI E EKE  +  HSEKLA+AFGLI T+P
Sbjct: 463 PKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQP 522

Query: 459 GSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           G+ I+IVKN+R+C+DCH   KL+SK+  RKI +RDR  +HHF +GSCSC +YW
Sbjct: 523 GTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 575



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 113/261 (43%), Gaps = 37/261 (14%)

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
            G +D +  +F +    S+  W  +I G A  G  ++AL  + +M +  +EPN+    S+
Sbjct: 22  LGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSI 81

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
           L  C     ++ G  ++S   K     D  +   L+D+YA+ G +  A Q+F +  +K +
Sbjct: 82  LKLC----PIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSL 137

Query: 206 SAYTS-------------------------------AIFGLAMNGHSIEAFELFENMKSK 234
            + T+                                I G   NG   EA  LF  M   
Sbjct: 138 VSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKA 197

Query: 235 GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEE 294
              P+ ++ ++VLSAC  LG +E G  + HS  + +GI+  +     +VD+  + G LE+
Sbjct: 198 KAKPNEVTVLSVLSACGQLGALESG-RWVHSYIENNGIQFNVHVGTALVDMYSKCGSLED 256

Query: 295 AENFIASMPMKPDNVIWGTLL 315
           A      +  K D V W +++
Sbjct: 257 ARLVFDKIDDK-DVVAWNSMI 276



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 94/193 (48%), Gaps = 7/193 (3%)

Query: 5   NSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKL 64
           N   ++V V  +L+  YS CG + DAR VFD+ DD DVV+WNSMI GY   G   E L+L
Sbjct: 232 NGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQL 291

Query: 65  FDKMPQ----RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQN--G 118
           F  M +      ++++  IL      G V +   +FN+M     +   +   G   N  G
Sbjct: 292 FKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLG 351

Query: 119 RPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCA 178
           R       +  ++++++EP+  +  +LL AC   G +  G  +   +  + +  +S    
Sbjct: 352 RAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLA-NSGTYI 410

Query: 179 ALIDMYAKCGSID 191
            L ++YA  G+ D
Sbjct: 411 LLSNIYAAVGNWD 423


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 220/471 (46%), Positives = 314/471 (66%)

Query: 41  DVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMP 100
           D+     +++ Y R G+++   +LFDKMP+R+ VS  ++L    + G +D A  +F  M 
Sbjct: 175 DLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMK 234

Query: 101 KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNW 160
           +R +V W V+I G+AQ+G P E+L LFR M      PN   ++++LSAC QLGAL+ G W
Sbjct: 235 ERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRW 294

Query: 161 VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGH 220
           ++SYI+ K I+++  +  ALIDMY+KCGS++ A  VF    DKDV A+ S I G AM+G 
Sbjct: 295 IHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGF 354

Query: 221 SIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA 280
           S  A +LFE M   G  P  I++I +LSAC H G VE+G  +F  M D +GI+P+++HY 
Sbjct: 355 SQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYG 414

Query: 281 CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQN 340
           CMV+LLGRAG LEEA   + +M +  D V+WGTLLG CR+H N ++G+ I   L++    
Sbjct: 415 CMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLHVNIKLGEEIAKFLVDQKLA 474

Query: 341 HDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEK 400
           + G Y+LLSN+Y  T   E   ++R  M++  I++  GCS IE+D  VHEF+AG+R H K
Sbjct: 475 NSGTYVLLSNMYAATGNWEGVAKMRTLMKEHGIEKEHGCSSIEVDNKVHEFVAGERKHPK 534

Query: 401 TQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGS 460
           ++EIY    EI   +K  GY  +T  V+ D+ EE+KE  +  HSEKLA+AFGLI TKPG+
Sbjct: 535 SKEIYVMLNEINSWLKARGYTPQTDVVLHDLREEQKEQSLEVHSEKLAIAFGLISTKPGT 594

Query: 461 VIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            ++IVKN+R+CSDCH+ MK++S++  RKI +RDR  +HHFEDG CSC +YW
Sbjct: 595 TVKIVKNLRVCSDCHTVMKMISEITGRKIVMRDRNRFHHFEDGLCSCGDYW 645



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 113/267 (42%), Gaps = 37/267 (13%)

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
            G +D +  VFN   + ++ S+  +I    Q+     A   + +M S  +EPN+    S+
Sbjct: 92  LGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSV 151

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYA-------------------- 185
           L +C+    L+ G  ++    K  +  D  +   L+D+YA                    
Sbjct: 152 LKSCS----LESGKVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSL 207

Query: 186 -----------KCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK 234
                      K G +D A  +F    ++DV  +   I G A +G   E+ +LF  M   
Sbjct: 208 VSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVA 267

Query: 235 GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEE 294
              P+ ++ +AVLSAC  LG +E G  + HS  +  GI+  +     ++D+  + G LE+
Sbjct: 268 KAIPNEVTVLAVLSACGQLGALESG-RWIHSYIENKGIQINVHVGTALIDMYSKCGSLED 326

Query: 295 AENFIASMPMKPDNVIWGTLLGACRVH 321
           A   +       D V W +++    +H
Sbjct: 327 AR-LVFDRIRDKDVVAWNSMIVGYAMH 352



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 88/189 (46%), Gaps = 13/189 (6%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           +V V  +LI  YS CG + DAR VFD   D DVV+WNSMI GY  +G     L+LF++M 
Sbjct: 307 NVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQLFEEMT 366

Query: 70  QR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLISGFAQNGRP 120
           +      D+++  IL      G V++    F  M  +      +  +  +++   + G  
Sbjct: 367 ETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNLLGRAGHL 426

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
           +EA  L + M    +  +  +  +LL  C     +  G  +  ++  + +  +S     L
Sbjct: 427 EEAYGLVKNMT---IAADPVLWGTLLGCCRLHVNIKLGEEIAKFLVDQKLA-NSGTYVLL 482

Query: 181 IDMYAKCGS 189
            +MYA  G+
Sbjct: 483 SNMYAATGN 491


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 215/458 (46%), Positives = 313/458 (68%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N++I  Y + G+I+   KLFD+    + +SWNS++ G ++   VD+A  +F+ MP++ +V
Sbjct: 415 NALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVV 474

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           SW  +ISG+AQN    E LALF+EMQ    +P+   LVS++SACA+L AL+ G WV++YI
Sbjct: 475 SWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYI 534

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
           ++  + ++ IL   LIDMY KCG ++ A++VF+   +K +S + + I GLAMNG    + 
Sbjct: 535 KRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSL 594

Query: 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL 285
           ++F NMK   ++P+ I+++ VL AC H+G V++G ++F+SM   H I+P + HY CMVDL
Sbjct: 595 DMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDL 654

Query: 286 LGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRY 345
           LGRAG L+EAE  +  MPM PD   WG LLGAC+ H ++EMG+R+G  LIE   +HDG +
Sbjct: 655 LGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFH 714

Query: 346 ILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIY 405
           +LLSNIY    K ++  E+R  M K ++ + PGCS+IE +GV+HEFLAGD++H     I 
Sbjct: 715 VLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAIE 774

Query: 406 QFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIV 465
               E+  K+K  GY  +   V+ D++EEEKE+ +  HSEKLA+AFGLI   P + IRI+
Sbjct: 775 DMLVEMAMKLKLEGYTPDINEVLLDVDEEEKESTLFRHSEKLAIAFGLINISPPTPIRIM 834

Query: 466 KNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
           KN+RIC+DCH+A KL+SK F RKI +RDR  +HHFE G
Sbjct: 835 KNLRICNDCHTAAKLISKAFCRKIVVRDRHRFHHFEQG 872



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 103/325 (31%), Positives = 171/325 (52%), Gaps = 32/325 (9%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K  F  DV+V+N+LI  +SVC  + DA  VF+ES  LD VSWNS++ GY+  G + E 
Sbjct: 239 VLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEA 298

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
             ++ +MP+R+ ++ NS++      G V +AC++F++M ++ +V+W  LI+ F QN   +
Sbjct: 299 KHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYE 358

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYS------------------ 163
           EA+  F  M  + +  +  + VS LSACA L  ++ G  ++S                  
Sbjct: 359 EAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALI 418

Query: 164 YIQKKC-------------IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
           Y+  KC               LD I   ++I  Y KC  +D A  +F S  +KDV +++S
Sbjct: 419 YMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSS 478

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I G A N    E   LF+ M+  G  PD  + ++V+SAC+ L  +E+G  + H+    +
Sbjct: 479 MISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQG-KWVHAYIKRN 537

Query: 271 GIKPELDHYACMVDLLGRAGLLEEA 295
           G+   +     ++D+  + G +E A
Sbjct: 538 GLTINVILGTTLIDMYMKCGCVETA 562



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 12/169 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           + +N    +V +  +LI  Y  CG V  A  VF    +  + +WN++I G   NG +   
Sbjct: 534 IKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESS 593

Query: 62  LKLFDKMPQ----RNDVSWNSILGGLVRFGSVDDACRVFNQM-----PKRSLVSWVVLIS 112
           L +F  M +     N++++  +LG     G VD+    F  M      + ++  +  ++ 
Sbjct: 594 LDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVD 653

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161
              + G+ +EA  L   M    + P+ A   +LL AC + G  + G  V
Sbjct: 654 LLGRAGKLQEAEELLNRMP---MTPDVATWGALLGACKKHGDSEMGRRV 699


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 223/511 (43%), Positives = 334/511 (65%), Gaps = 15/511 (2%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++VK  F  D FV ++L++ Y +C  + DA  +F +    +VV ++              
Sbjct: 147 LIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCK----NVVDFDGSCQ---------- 192

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
            ++L  +    N V WN ++ G VR G +  A  +F++MP+RS+VSW V+ISG+AQNG  
Sbjct: 193 -MELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHF 251

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
            EA+ LF+EMQS +++PN   LVS+L A A++GAL+ G W++ Y  K  I++D +L +AL
Sbjct: 252 IEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLGSAL 311

Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           +DMY+KCGSID A+QVF +   ++   +++ I   AM+G + +A   F  M   G++P+ 
Sbjct: 312 VDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPND 371

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
           ++YI +LSACSH G VE+G  +F  M  V G++P ++HY CMVDLLGRAG LEEAE  I 
Sbjct: 372 VAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIR 431

Query: 301 SMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGEN 360
           +MP++PD+VIW  LLGAC++H+N +MG+R+   L+E   +  G Y+ LSN+Y      E 
Sbjct: 432 NMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEA 491

Query: 361 AEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGY 420
              VR  M+   I++ PGCS IE+ G++HEFL  D SH K +EI     E+  K+++ GY
Sbjct: 492 VARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKLRSNGY 551

Query: 421 NVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKL 480
              T  V  + +E+E+   + YHSEK+A+AFGLI T P   ++IVKN+RIC DCH+++KL
Sbjct: 552 RPNTLEVFLNTDEQERARALQYHSEKIAVAFGLISTAPQHPLKIVKNLRICEDCHASLKL 611

Query: 481 VSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           +S ++KR+I +RDRK +H FE GSCSC++YW
Sbjct: 612 ISLIYKRQIIVRDRKRFHQFEHGSCSCMDYW 642



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 118/288 (40%), Gaps = 53/288 (18%)

Query: 89  VDDACRVFNQMPKRSLVSWVVLISGFAQNGR---PKEALALFREMQ-SLDLEPNSAILVS 144
           +D A  VF QMP+ +   W  ++   A+        EAL LF  M     ++PN     S
Sbjct: 68  IDYARAVFRQMPEPNCFCWNTILRVLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPS 127

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC----------------- 187
           +L ACA+   L  G  ++  I K     D  + + L+ MY  C                 
Sbjct: 128 VLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDF 187

Query: 188 ------------------------------GSIDLAMQVFHSYGDKDVSAYTSAIFGLAM 217
                                         G I  A  +F     + V ++   I G A 
Sbjct: 188 DGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQ 247

Query: 218 NGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELD 277
           NGH IEA  LF+ M+S  I P+ ++ ++VL A + +G +E G  + H     + I+ +  
Sbjct: 248 NGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELG-KWIHLYAGKNKIEIDDV 306

Query: 278 HYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAE 325
             + +VD+  + G ++EA     ++P K + + W  ++GA  +H  AE
Sbjct: 307 LGSALVDMYSKCGSIDEALQVFETLP-KRNAITWSAIIGAFAMHGRAE 353


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 238/580 (41%), Positives = 347/580 (59%), Gaps = 70/580 (12%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDES------------------------ 37
           V+K  F  DVF+  SLI  Y+  G + +A+ VFD+S                        
Sbjct: 155 VLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRA 214

Query: 38  ----DDL---DVVSWNSMINGYVRNGEILEGLKLFDKM------PQRNDV---------- 74
               D++   DVVSWN+MI GY + G   E L LF+ M      P  + +          
Sbjct: 215 RQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQS 274

Query: 75  ----------SW-------------NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLI 111
                     SW             N+++    + G +  A  +F+ M +R ++SW V+I
Sbjct: 275 NALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMI 334

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK 171
            G+      KEALALFREM +  +EP     +S+L +CA LGA+D G W+++YI K    
Sbjct: 335 GGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNS 394

Query: 172 LDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM 231
           + + L  +LID+YAKCG+I  A QVF     K ++++ + I GLAM+G + +AFELF  M
Sbjct: 395 VSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKM 454

Query: 232 KSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGL 291
            S GI P+ I+++ +LSAC H G V+ G  +F SM   + I P+  HY CM+DLLGRAGL
Sbjct: 455 SSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGL 514

Query: 292 LEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNI 351
            EEAE+ + +M +KPD  IWG+LLGACR H   E+G+ +   L E + ++ G Y+LLSNI
Sbjct: 515 FEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFELEPDNPGAYVLLSNI 574

Query: 352 YVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEI 411
           Y    K ++   +R  +  R +K+ PGC+ IE+D VVHEFL GD+ H ++++IY+  EE+
Sbjct: 575 YAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDNVVHEFLVGDKVHPQSEDIYRMLEEV 634

Query: 412 VKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRIC 471
            +++K +G+  +T  V++D++EE KE  + +HSEKLA+AFGLI TKPG+ IRI+KN+R+C
Sbjct: 635 DEQLKVFGFVADTSEVLYDMDEEWKEGALSHHSEKLAIAFGLISTKPGTPIRIIKNLRVC 694

Query: 472 SDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            +CHSA KL+SK+F R+I  RDR  +HHF+DGSCSC +YW
Sbjct: 695 RNCHSATKLISKIFNREIIARDRNRFHHFKDGSCSCNDYW 734



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 116/264 (43%), Gaps = 33/264 (12%)

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
           R G +  A  +FN + + +L  W  +I G + +  P  AL  F  M    +EPNS     
Sbjct: 75  RSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPF 134

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS--------------- 189
           LL +CA+L +   G  +++++ K     D  +  +LI+MYA+ G                
Sbjct: 135 LLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRD 194

Query: 190 ----------------IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKS 233
                           +D A Q+F     KDV ++ + I G A  G S EA  LFE+M+ 
Sbjct: 195 AISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRK 254

Query: 234 KGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLE 293
             + P+  + ++VLSAC+    ++ G     S  +  G+   L     ++D+  + G L+
Sbjct: 255 ANVPPNESTIVSVLSACAQSNALDLG-NSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQ 313

Query: 294 EAENFIASMPMKPDNVIWGTLLGA 317
            A      M ++ D + W  ++G 
Sbjct: 314 TARELFDDM-LERDVISWNVMIGG 336



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 72/156 (46%), Gaps = 6/156 (3%)

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYA--KCGSIDLAMQVFHSY 200
           + LLS C  +        ++++I K  +       + LI+  A  + G I  A+ +F+S 
Sbjct: 33  LKLLSKCQSIRTFKQ---IHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSI 89

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
            + ++  + S I GL+M+     A   F  M   G+ P+S ++  +L +C+ L    +G 
Sbjct: 90  EEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEG- 148

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAE 296
              H+     G   ++  +  ++++  ++G +  A+
Sbjct: 149 KQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQ 184


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 228/554 (41%), Positives = 335/554 (60%), Gaps = 44/554 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V   S   D     +LI  Y+  G + +AR +FDE    DVVSWN+MI+GY ++G + E
Sbjct: 184 LVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEE 243

Query: 61  GLKLFDKMPQRNDV----------------------------SW-------------NSI 79
            +  F++M +R  V                            SW             N +
Sbjct: 244 AMAFFEEM-RRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGL 302

Query: 80  LGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS 139
           +   V+ G +++A  +F ++  +++VSW V+I G+      KEAL LFR M   +++PN 
Sbjct: 303 IDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPND 362

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQK--KCIKLDSILCAALIDMYAKCGSIDLAMQVF 197
              +S+L ACA LGALD G WV++Y+ K  K +K    L  +LIDMYAKCG + +A ++F
Sbjct: 363 VTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIF 422

Query: 198 HSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVE 257
                K ++ + + I G AM+GH+  A  LF  M S+G  PD I+++ VL+AC H G + 
Sbjct: 423 DCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLS 482

Query: 258 KGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
            G  YF SM   + + P+L HY CM+DL GRAGL +EAE  + +M MKPD  IW +LLGA
Sbjct: 483 LGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKPDGAIWCSLLGA 542

Query: 318 CRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAP 377
           CR+HR  E+ + +   L E +  +   Y+LLSNIY    + E+  ++R  +   ++K+ P
Sbjct: 543 CRIHRRIELAESVAKHLFELEPENPSAYVLLSNIYAGAGRWEDVAKIRTRLNDNRMKKVP 602

Query: 378 GCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKE 437
           GCS IE+D VVHEFL GD+ H ++ EIY+  +EI  +++  G+  +T  V++D++EE KE
Sbjct: 603 GCSSIEVDSVVHEFLVGDKVHPQSNEIYKMLDEIDMRLEKAGFVPDTSEVLYDMDEEWKE 662

Query: 438 TVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHY 497
            V+ +HSEKLA+AFGLI TKPG+ IRI+KN+R+C +CHSA KL+SK+F R+I  RDR  +
Sbjct: 663 GVLSHHSEKLAIAFGLISTKPGTTIRIMKNLRVCGNCHSATKLISKIFNREIIARDRNRF 722

Query: 498 HHFEDGSCSCLEYW 511
           HHF+DGSCSC +YW
Sbjct: 723 HHFKDGSCSCKDYW 736



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 93/283 (32%), Positives = 160/283 (56%), Gaps = 5/283 (1%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
            S+IN Y +NGE++    +FDK   R+ VS+ +++ G    G +D+A  +F+++P R +V
Sbjct: 167 TSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVV 226

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG-ALDYGNWVYSY 164
           SW  +ISG+AQ+GR +EA+A F EM+   + PN + ++S+LSACAQ G +L  GNWV S+
Sbjct: 227 SWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSW 286

Query: 165 IQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEA 224
           I+ + +  +  L   LIDMY KCG ++ A  +F    DK+V ++   I G        EA
Sbjct: 287 IEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEA 346

Query: 225 FELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD--VHGIKPELDHYACM 282
             LF  M    I P+ ++++++L AC++LG ++ G  + H+  D  +  +K  +  +  +
Sbjct: 347 LGLFRRMMQSNIDPNDVTFLSILPACANLGALDLG-KWVHAYVDKNMKSMKNTVALWTSL 405

Query: 283 VDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAE 325
           +D+  + G L  A+     M  K     W  ++    +H + +
Sbjct: 406 IDMYAKCGDLAVAKRIFDCMNTK-SLATWNAMISGFAMHGHTD 447



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 113/262 (43%), Gaps = 32/262 (12%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           G +  A  +F  +   + V W  +I G + +  P  AL  +  M S   EPN     S+ 
Sbjct: 76  GDLSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIF 135

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS----------------- 189
            +C ++     G  V++++ K  ++ ++ +  +LI+MYA+ G                  
Sbjct: 136 KSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAV 195

Query: 190 --------------IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG 235
                         +D A ++F     +DV ++ + I G A +G   EA   FE M+   
Sbjct: 196 SFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAK 255

Query: 236 ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA 295
           ++P+  + ++VLSAC+  G   +   +  S  +  G+   +     ++D+  + G LEEA
Sbjct: 256 VTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEA 315

Query: 296 ENFIASMPMKPDNVIWGTLLGA 317
            N    +  K + V W  ++G 
Sbjct: 316 SNLFEKIQDK-NVVSWNVMIGG 336


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 222/511 (43%), Positives = 333/511 (65%), Gaps = 15/511 (2%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++VK  F  D FV ++L++ Y +C  + DA  +F +    +VV ++              
Sbjct: 147 LIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCK----NVVDFDGSCQ---------- 192

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
            ++L  +    N V WN ++ G VR G +  A  +F++MP RS+VSW V+ISG+AQNG  
Sbjct: 193 -MELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHF 251

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
            EA+ LF+EMQS +++PN   LVS+L A A++GAL+ G W++ Y  K  +++D +L +AL
Sbjct: 252 IEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLGSAL 311

Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           +DMY+KCGSID A+QVF +   ++   +++ I   AM+G + +A   F  M   G++P+ 
Sbjct: 312 VDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPND 371

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
           ++YI +LSACSH G VE+G  +F  M  V G++P ++HY CMVDLLGRAG LEEAE  I 
Sbjct: 372 VAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIR 431

Query: 301 SMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGEN 360
           +MP++PD+VIW  LLGAC++H+N +MG+R+   L+E   +  G Y+ LSN+Y      E 
Sbjct: 432 NMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEA 491

Query: 361 AEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGY 420
              VR  M+   I++ PGCS IE+ G++HEFL  D SH K +EI     E+  K+++ GY
Sbjct: 492 VARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKLRSNGY 551

Query: 421 NVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKL 480
              T  V  + +E+E+   + YHSEK+A+AFGLI T P   ++IVKN+RIC DCH+++KL
Sbjct: 552 RPNTLEVFLNTDEQERARALQYHSEKIAVAFGLISTAPQHPLKIVKNLRICEDCHASLKL 611

Query: 481 VSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           +S ++KR+I +RDRK +H FE GSCSC++YW
Sbjct: 612 ISLIYKRQIIVRDRKRFHQFEHGSCSCMDYW 642



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 118/288 (40%), Gaps = 53/288 (18%)

Query: 89  VDDACRVFNQMPKRSLVSWVVLISGFAQNGR---PKEALALFREMQ-SLDLEPNSAILVS 144
           +D A  VF QMP+ +   W  ++   A+        EAL LF  M     ++PN     S
Sbjct: 68  IDYARAVFRQMPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPS 127

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC----------------- 187
           +L ACA+   L  G  ++  I K     D  + + L+ MY  C                 
Sbjct: 128 VLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDF 187

Query: 188 ------------------------------GSIDLAMQVFHSYGDKDVSAYTSAIFGLAM 217
                                         G I  A  +F     + V ++   I G A 
Sbjct: 188 DGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQ 247

Query: 218 NGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELD 277
           NGH IEA  LF+ M+S  I P+ ++ ++VL A + +G +E G  + H     + ++ +  
Sbjct: 248 NGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELG-KWIHLYAGKNKVEIDDV 306

Query: 278 HYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAE 325
             + +VD+  + G +++A     ++P K + + W  ++GA  +H  AE
Sbjct: 307 LGSALVDMYSKCGSIDKALQVFETLP-KRNAITWSAIIGAFAMHGRAE 353


>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 663

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 236/514 (45%), Positives = 320/514 (62%), Gaps = 35/514 (6%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           MVVK+ +  D+FV NSL+  YS+  R+ DA+ VFDE    DV++W S++ GY   GE++ 
Sbjct: 182 MVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKGYAMRGELVR 241

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
             +LFD MP RNDVSW                                V+++G+  +   
Sbjct: 242 ARELFDMMPGRNDVSW-------------------------------AVMVAGYVGHRFY 270

Query: 121 KEALALFREMQSLD-LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
            EAL  F +M   D ++PN A+LVS+LSACA LGALD G W++ YI K  I L S +  A
Sbjct: 271 NEALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQGKWIHVYIDKNRILLSSNISTA 330

Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
           LIDMYAKCG ID A +VF     +D+  +TS I GL+M+G   E    F  M ++G  PD
Sbjct: 331 LIDMYAKCGRIDCARRVFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPD 390

Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI 299
            I+ + VL+ CSH G VE+G   FH M  + GI P+L+HY C++DLLGRAG LE A   I
Sbjct: 391 DITLLGVLNGCSHSGLVEEGLSIFHDMIPLWGIVPKLEHYGCLIDLLGRAGRLESAFEAI 450

Query: 300 ASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIE-SDQNHDGRYILLSNIYVETLKG 358
            SMPM+PD V W  LL ACR+H + ++G+RI N + E    +H G Y+LLSN+Y    + 
Sbjct: 451 KSMPMEPDVVAWRALLSACRIHGDVDLGERIINHIAELCPGSHGGGYVLLSNLYASMGQW 510

Query: 359 ENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIK-N 417
           E+  +VRK M +R  +  PGCS IE+DGVVHEFLA D+ H +  EI +   E++++I   
Sbjct: 511 ESVTKVRKAMSQRGSEGCPGCSWIEIDGVVHEFLAADKLHPRISEINKKLNEVLRRISIE 570

Query: 418 YGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSA 477
            GY   T+ V+FD+ EE+KE  + +HSEKLA+AFGL+ T+ G+ IRI KN+R C DCHSA
Sbjct: 571 GGYVPSTKQVLFDLNEEDKEQAVSWHSEKLAVAFGLLSTQEGT-IRITKNLRTCEDCHSA 629

Query: 478 MKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           MK +S VF R+I +RDR  +H F  G+CSC +YW
Sbjct: 630 MKTISLVFNREIVVRDRSRFHTFRYGNCSCTDYW 663



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 122/286 (42%), Gaps = 41/286 (14%)

Query: 95  VFNQMPK-RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA---ILVSLLSACA 150
           VF+Q P     + W ++I  +++    +E+L LF +M +    P SA       + +AC+
Sbjct: 109 VFDQFPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHG-RPTSADKYTFTFVFTACS 167

Query: 151 QLGAL-DYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYT 209
           +   L  YG  V+  + K   + D  +  +L++MY+    +  A +VF     +DV  +T
Sbjct: 168 RHPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWT 227

Query: 210 SAIFGLAMNGHSIEAFELFENMKSKG--------------------------------IS 237
           S + G AM G  + A ELF+ M  +                                 + 
Sbjct: 228 SVVKGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVK 287

Query: 238 PDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAEN 297
           P+    +++LSAC+HLG +++G  + H   D + I    +    ++D+  + G ++ A  
Sbjct: 288 PNEAVLVSILSACAHLGALDQG-KWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARR 346

Query: 298 FIASMPMKPDNVIWGTLLGACRVH-RNAEMGQRIGNMLIESDQNHD 342
               +  K D + W +++    +H   AE       ML E  +  D
Sbjct: 347 VFDGL-HKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDD 391


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 223/510 (43%), Positives = 330/510 (64%), Gaps = 32/510 (6%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
            K  FA D +++N+L+  YS CG +  AR                               
Sbjct: 102 TKLGFASDAYIQNTLMNMYSNCGCLVSAR------------------------------- 130

Query: 63  KLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRS-LVSWVVLISGFAQNGRPK 121
           K+FDKM  ++ VSW +++G   ++    +A ++F +M   S L  W ++I+G  ++   +
Sbjct: 131 KVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYE 190

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
           EAL+LF EMQ   ++ +   + SLL AC  LGAL+ G W++ YI+K+ I++D  L  AL+
Sbjct: 191 EALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALV 250

Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
           DMYAKCGSI+ AM+VF    +KDV  +T+ I GLAM G  ++A ELF  M+   + PD+I
Sbjct: 251 DMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAI 310

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
           +++ VL+ACSH G V +G  YF+SM + +GI+P ++HY CMVD+LGRAG + EAE+ I +
Sbjct: 311 TFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQN 370

Query: 302 MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361
           MPM PD  +   LL ACR+H N  + +R    LIE D  + G Y+LLSNIY      E A
Sbjct: 371 MPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAA 430

Query: 362 EEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYN 421
           +++R+ M +R IK+ PGCS IE+ GVVHEF+ GD SH ++ EIY+  +++++++K+ GY 
Sbjct: 431 KKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAGYV 490

Query: 422 VETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLV 481
            +   V+FD++E+EKE  +  HSEKLA+AFGL+ T PG+ IR+VKN+R+CSDCHSAMK +
Sbjct: 491 PDKSEVLFDMDEKEKENELSLHSEKLAIAFGLLSTTPGTPIRVVKNLRVCSDCHSAMKFI 550

Query: 482 SKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           S+V+ R+I +RDR  +HHF  GSCSC ++W
Sbjct: 551 SEVYNREIIVRDRNRFHHFTKGSCSCRDFW 580



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 115/261 (44%), Gaps = 37/261 (14%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           GS+  A  VFNQ+P  +  +   +I G+     P++A+  ++ M    L+P+     SL 
Sbjct: 26  GSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLF 85

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
            +C   G L  G  ++ +  K     D+ +   L++MY+ CG +  A +VF    +K V 
Sbjct: 86  KSC---GVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVV 142

Query: 207 AYTSAI---------------------------FGLAMNGHS-----IEAFELFENMKSK 234
           ++ + I                           + + +NGH       EA  LF  M+  
Sbjct: 143 SWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLS 202

Query: 235 GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEE 294
           G+  D ++  ++L AC+HLG +E G  + H   +   I+ ++     +VD+  + G +E 
Sbjct: 203 GVKGDKVTMASLLIACTHLGALELG-KWLHVYIEKEKIEVDVALGTALVDMYAKCGSIES 261

Query: 295 AENFIASMPMKPDNVIWGTLL 315
           A      MP K D + W  L+
Sbjct: 262 AMRVFQEMPEK-DVMTWTALI 281


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 229/518 (44%), Positives = 336/518 (64%), Gaps = 10/518 (1%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGR-VRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           V  +++ Y + V+   ++     G+ + D   V     D DV   N++IN Y   G + +
Sbjct: 125 VGPDNYTYPLVVQACAVRLLEFGGKEIHDH--VLKVGFDSDVYVQNTLINMYAVCGNMRD 182

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVR---FGSVDDACRVFNQMPKRSLVSWVVLISGFAQN 117
             KLFD+ P  + VSWNSIL G V+    G V +A ++FN+M ++ +VSW  LISG+ QN
Sbjct: 183 ARKLFDESPVLDSVSWNSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQN 242

Query: 118 GRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILC 177
           G  +EAL +F EM +  +  +  ++VS+LSACA L  +  G  ++  + +  I+    L 
Sbjct: 243 GMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQ 302

Query: 178 AALI----DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKS 233
            ALI    DMY KCG ++ A++VF+   +K VS++ + I GLA+NG    + ++F  MK+
Sbjct: 303 NALIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKN 362

Query: 234 KGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLE 293
            G+ P+ I+++ VL AC H+G V++G  +F SM + HGI+P + HY CMVDLLGRAGLL 
Sbjct: 363 NGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLN 422

Query: 294 EAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYV 353
           EAE  I SMPM PD   WG LLGAC+ H + EMG+R+G  LIE   +HDG ++LLSNI+ 
Sbjct: 423 EAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFA 482

Query: 354 ETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVK 413
                E+  EVR  M+++ + + PGCSLIE +GVVHEFLAGD++H    ++     E+ K
Sbjct: 483 SKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHEFLAGDKTHPWINKVEGMLNEMAK 542

Query: 414 KIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSD 473
           ++K  GY  +T  V  DI+EEEKET +  HSEKLA+AFGL+   P + IRI+KN+RIC+D
Sbjct: 543 RLKMEGYAPDTNEVSLDIDEEEKETTLFRHSEKLAIAFGLLTISPPTPIRIMKNLRICND 602

Query: 474 CHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           CH+A KL+SK + R+I +RDR  +H+F++G+CSC++YW
Sbjct: 603 CHTAAKLISKAYAREIVVRDRHRFHYFKEGACSCMDYW 640



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 99/209 (47%), Gaps = 36/209 (17%)

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
           F  +D + ++F+++   +   W  ++  + Q+   ++AL L++ M   ++ P++     +
Sbjct: 76  FIGLDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLV 135

Query: 146 LSACAQLGALDYG-NWVYSYIQKKCIKLDSILCAALIDMYAKCGSI-------------- 190
           + ACA +  L++G   ++ ++ K     D  +   LI+MYA CG++              
Sbjct: 136 VQACA-VRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLD 194

Query: 191 ---------------DL-----AMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFEN 230
                          D+     A ++F+   +KD+ ++++ I G   NG   EA  +F  
Sbjct: 195 SVSWNSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIE 254

Query: 231 MKSKGISPDSISYIAVLSACSHLGWVEKG 259
           M + G+  D +  ++VLSAC+HL  V+ G
Sbjct: 255 MNANGMRLDEVVVVSVLSACAHLSIVKTG 283



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 82/174 (47%), Gaps = 16/174 (9%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYS----VCGRVRDARWVFDESDDLDVVSWNSMINGYVRNG 56
           +V++      V ++N+LI  YS     CG V +A  VF+  ++  V SWN++I G   NG
Sbjct: 289 LVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNG 348

Query: 57  EILEGLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDA-CRVFNQMPKRSLVSWV--- 108
            +   L +F +M       N++++  +LG     G VD+  C   + + K  +   V   
Sbjct: 349 LVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHY 408

Query: 109 -VLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161
             ++    + G   EA  L   ++S+ + P+ A   +LL AC + G  + G  V
Sbjct: 409 GCMVDLLGRAGLLNEAEKL---IESMPMAPDVATWGALLGACKKHGDTEMGERV 459


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 218/503 (43%), Positives = 323/503 (64%), Gaps = 7/503 (1%)

Query: 16  SLIQFYSVCGRVRDAR-------WVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM 68
           +L+   S C +++D R       +V +   + ++V  N+MI+ Y   GE+   L +F  M
Sbjct: 221 TLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSM 280

Query: 69  PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFR 128
             R+ +SW +I+ G    G +D A   F++MP++  VSW  +I G+ ++ R KEAL LFR
Sbjct: 281 NNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFR 340

Query: 129 EMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCG 188
            MQ+ +++P+   +VS+L+ACA LGAL+ G W+ +YI +  IK D  +  ALIDMY KCG
Sbjct: 341 NMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCG 400

Query: 189 SIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248
            +D A  +F     +D   +T+ I GLA+NGH  +A ++F NM    I PD I+YI VLS
Sbjct: 401 DVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLS 460

Query: 249 ACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDN 308
           AC+H G V+KG  YF  M   HGI+P + HY C+VDLL RAG L+EA   I +MP+K ++
Sbjct: 461 ACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANS 520

Query: 309 VIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTM 368
           ++WG LL  CRV+R ++M + +   ++E + ++   Y+LL NIY    +  +  E+R+ M
Sbjct: 521 IVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMM 580

Query: 369 RKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVM 428
             + IK+ PGCSLIE++G VHEF+AGDRSH +T+ I    +++ + +K  GY+ +   V 
Sbjct: 581 MDKGIKKTPGCSLIEMNGRVHEFVAGDRSHPQTKNIDAKLDKMTQDLKLAGYSPDISEVF 640

Query: 429 FDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRK 488
            DI EE+KE  +  HSEKLA+AFGLI + PG  IRI KN+R+C DCH+  KLVSKV+ R+
Sbjct: 641 LDIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRITKNLRMCMDCHNMAKLVSKVYNRE 700

Query: 489 ISIRDRKHYHHFEDGSCSCLEYW 511
           + +RDR  +HHF+ G CSC +YW
Sbjct: 701 VIVRDRTRFHHFKHGLCSCKDYW 723



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/393 (25%), Positives = 178/393 (45%), Gaps = 73/393 (18%)

Query: 25  GRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQR----NDVSWNSIL 80
           G  + AR +FDE  + ++  WN+MI GY R      G+ L+ +M +R    +  ++  + 
Sbjct: 66  GDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLF 125

Query: 81  GGLVR-----------------------------------FGSVDDACRVFNQMPKRSLV 105
            G  R                                    G +D A  VF+  PK  ++
Sbjct: 126 KGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVI 185

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           +W ++IS + + G+ +E+  LF  M+   + P +  LV +LSAC++L  L  G  V+SY+
Sbjct: 186 TWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYV 245

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNG------ 219
           +   ++ + +L  A+IDMYA CG +D A+ +F S  ++D+ ++T+ + G    G      
Sbjct: 246 KNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVAR 305

Query: 220 -------------------------HSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
                                       EA ELF NM++  + PD  + ++VL+AC+HLG
Sbjct: 306 NYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLG 365

Query: 255 WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTL 314
            +E G  +  +  D + IK +L     ++D+  + G +++AE+    M  + D   W  +
Sbjct: 366 ALELG-EWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQR-DKFTWTAM 423

Query: 315 LGACRVHRNAEMG-QRIGNMLIESDQNHDGRYI 346
           +    V+ + E       NML  S    +  YI
Sbjct: 424 IVGLAVNGHGEKALDMFSNMLKASILPDEITYI 456



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 113/244 (46%), Gaps = 8/244 (3%)

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
           +G    A R+F+++P+ +L  W  +I G+++   P+  ++L+ EM    ++P+      L
Sbjct: 65  YGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFL 124

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
                +  AL+YG  ++ ++ K  ++ +  +  AL+ MY  CG +D A  VF      DV
Sbjct: 125 FKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADV 184

Query: 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHS 265
             +   I      G   E+  LF  M+ K + P +++ + VLSACS L  +  G    HS
Sbjct: 185 ITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTG-KKVHS 243

Query: 266 MFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTL------LGACR 319
                 ++  L     M+D+    G ++ A     SM  + D + W T+      LG   
Sbjct: 244 YVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNR-DIISWTTIVSGFTNLGEID 302

Query: 320 VHRN 323
           V RN
Sbjct: 303 VARN 306


>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
 gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 226/514 (43%), Positives = 333/514 (64%), Gaps = 4/514 (0%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDL----DVVSWNSMINGYVRNGE 57
           ++K    +D FV+ SL+  Y     +  A  VFDES +      V+ WN +I+GY R G+
Sbjct: 166 ILKFGLEFDSFVRVSLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYCRMGD 225

Query: 58  ILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQN 117
           +++  +LFD MP+++  SWNS++ G ++ G +  A  +F +MP++++VSW  +++GF+QN
Sbjct: 226 LVKATELFDSMPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQN 285

Query: 118 GRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILC 177
           G P++AL  F  M      PN   +VS LSACA++GALD G  +++Y+     KL+ ++ 
Sbjct: 286 GDPEKALETFFCMLEEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLNLVIG 345

Query: 178 AALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGIS 237
            AL+DMYAKCG+I+ A +VFH   +K +  ++  I+G A++GH  +A + FE MK  G  
Sbjct: 346 TALVDMYAKCGNIEHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTK 405

Query: 238 PDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAEN 297
           PDS+ ++AVL+ACSH G V +G  +F +M   + I+P + HY  +VD+LGRAG L+EA  
Sbjct: 406 PDSVVFLAVLNACSHSGQVNEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEALK 465

Query: 298 FIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLK 357
           FI +MP+ PD V+WG L  ACR H+N EM +     L++ +  H G Y+ LSN Y    +
Sbjct: 466 FIRAMPITPDFVVWGALFCACRTHKNVEMAELASKKLLQLEPKHPGSYVFLSNAYASVGR 525

Query: 358 GENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKN 417
            ++AE VR +MR     + PG S IE+D  +H F+AGD +H +  EIY   +EI    + 
Sbjct: 526 WDDAERVRVSMRDHGAHKDPGWSFIEVDHKLHRFVAGDNTHNRAVEIYSKLDEISASARE 585

Query: 418 YGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSA 477
            GY  E   V+ +IEEEEKE  +GYHSEKLALAFG++ T+PG+ +RIVKN+R+C DCHS 
Sbjct: 586 KGYTKEIECVLHNIEEEEKEEALGYHSEKLALAFGIVSTRPGTTVRIVKNLRVCVDCHSF 645

Query: 478 MKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           MK  SK+ KR+I +RD K +HHF DG CSC +YW
Sbjct: 646 MKYASKMSKREIILRDMKRFHHFNDGVCSCGDYW 679



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 67/300 (22%), Positives = 114/300 (38%), Gaps = 68/300 (22%)

Query: 88  SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLS 147
           SVD A  +F +   ++   +  LI G A+N R + +++ F  M    + P+      +L 
Sbjct: 89  SVDYAISIFQRFELKNSYLFNALIRGLAENSRFESSISFFVLMLKWKISPDRLTFPFVLK 148

Query: 148 ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVF---------- 197
           + A L     G  ++  I K  ++ DS +  +L+DMY K   +  A++VF          
Sbjct: 149 SAAALSNGGVGRALHCGILKFGLEFDSFVRVSLVDMYVKVEELGSALKVFDESPESVKNG 208

Query: 198 ---------HSY---GD-------------KDVSAYTSAIFG------------------ 214
                    H Y   GD             KD  ++ S I G                  
Sbjct: 209 SVLIWNVLIHGYCRMGDLVKATELFDSMPKKDTGSWNSLINGFMKMGDMGRAKELFVKMP 268

Query: 215 -------------LAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
                         + NG   +A E F  M  +G  P+  + ++ LSAC+ +G ++ G  
Sbjct: 269 EKNVVSWTTMVNGFSQNGDPEKALETFFCMLEEGARPNDYTIVSALSACAKIGALDAGL- 327

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
             H+    +G K  L     +VD+  + G +E AE        K   +IW  ++    +H
Sbjct: 328 RIHNYLSGNGFKLNLVIGTALVDMYAKCGNIEHAEKVFHETKEK-GLLIWSVMIWGWAIH 386


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 229/512 (44%), Positives = 336/512 (65%), Gaps = 16/512 (3%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +++K     D FV  +L++ Y +CG + DA  +F  +     V     +   VR+     
Sbjct: 142 LLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRN-----VEGVDDVRNLVRD----- 191

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
                ++  + N V  N ++ G  R G++  A  +F++M +RS+VSW V+ISG+AQNG  
Sbjct: 192 -----ERGREFNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFY 246

Query: 121 KEALALF-REMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
           KEA+ +F R MQ  D+ PN   LVS+L A ++LG L+ G WV+ Y +K  I++D +L +A
Sbjct: 247 KEAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLGSA 306

Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
           L+DMYAKCGSI+ A+QVF      +V  + + I GLAM+G + + F     M+  GISP 
Sbjct: 307 LVDMYAKCGSIEKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPS 366

Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI 299
            ++YIA+LSACSH G V++G  +F+ M +  G+KP+++HY CMVDLLGRAG LEEAE  I
Sbjct: 367 DVTYIAILSACSHAGLVDEGRSFFNDMVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEELI 426

Query: 300 ASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGE 359
            +MPMKPD+VIW  LLGA ++H+N ++G R   +L++   +  G Y+ LSN+Y  +   +
Sbjct: 427 LNMPMKPDDVIWKALLGASKMHKNIKIGMRAAEVLMQMAPHDSGAYVALSNMYASSGNWD 486

Query: 360 NAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYG 419
               VR  M+   I++ PGCS IE+DGV+HEFL  D SH + ++I+   EEI  K+   G
Sbjct: 487 GVAAVRLMMKDMDIRKDPGCSWIEIDGVIHEFLVEDDSHSRAKDIHSMLEEISNKLSLEG 546

Query: 420 YNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMK 479
           +  +T  V+  ++E+ KE+V+ YHSEK+A+AFGLI T P + + IVKN+RIC DCHS+MK
Sbjct: 547 HMPDTTQVLLKMDEKHKESVLHYHSEKIAVAFGLISTPPKTPLCIVKNLRICEDCHSSMK 606

Query: 480 LVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           L+SK+++RKI IRDRK +HHFE GSCSC++YW
Sbjct: 607 LISKMYERKIVIRDRKRFHHFEHGSCSCMDYW 638



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 133/284 (46%), Gaps = 23/284 (8%)

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVD-DACRVFNQMPKRSLV-----SWVVLISGF 114
            L +FD++P+RN  +WN+++  L        DA  VF QM   + V     ++  ++   
Sbjct: 68  ALSVFDQLPERNCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKAC 127

Query: 115 AQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV-YSYIQ------- 166
           A   R  E   +   +    L  +  ++ +LL      G+++  N + Y  ++       
Sbjct: 128 AVMARLAEGKQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRN 187

Query: 167 ----KKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSI 222
               ++  + + +LC  ++D YA+ G++  A ++F     + V ++   I G A NG   
Sbjct: 188 LVRDERGREFNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYK 247

Query: 223 EAFELFENMKSKG-ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYAC 281
           EA E+F  M   G + P+ ++ ++VL A S LG +E G  + H   + + I+ +    + 
Sbjct: 248 EAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLELG-KWVHLYAEKNKIRIDDVLGSA 306

Query: 282 MVDLLGRAGLLEEAENFIASMPMKPDNVI-WGTLLGACRVHRNA 324
           +VD+  + G +E+A      +P   +NVI W  ++G   +H  A
Sbjct: 307 LVDMYAKCGSIEKAIQVFERLPQ--NNVITWNAVIGGLAMHGKA 348


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 235/551 (42%), Positives = 352/551 (63%), Gaps = 41/551 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+KN F  D+FV N+LIQFY  CG    A  VFDES   DVV+WN MIN ++  G   + 
Sbjct: 137 VLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKA 196

Query: 62  LKLFDKMPQRNDVSW----------------------------------------NSILG 81
             L D+M + +++                                          N+IL 
Sbjct: 197 FDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNNAILD 256

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              +   ++ A  VFN++ ++ ++SW  ++SG A++G  +EALALF++MQ   +E +   
Sbjct: 257 MYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEIT 316

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           LV +LSACAQ GALD G +++  I K  I  D +L  AL+DMYAKCGSIDLA+QVF    
Sbjct: 317 LVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMR 376

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
            ++V  + + I GLAM+GH  +A  LF+ M+   + PD +++IA+L ACSH G V++G  
Sbjct: 377 VRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLA 436

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            F +M +   I+P ++HY C+VDLL RA  +++A  FI +MP+K ++V+W TLLGACR  
Sbjct: 437 MFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSG 496

Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
            + ++ ++IG  +IE + +  GRY++LSN+Y    + ++A ++RK M+ + I++ PGCS 
Sbjct: 497 GHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSW 556

Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVE-TRSVMFDIEEEEKETVI 440
           IEL+G++H+F+AGDRSH +T++IY   EE+ +++   G +V  T +V+FDIEEEEKE  +
Sbjct: 557 IELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTANVLFDIEEEEKEHSL 616

Query: 441 GYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF 500
             HSEKLA+A GLI T  GS IRIVKN+R+C+DCHS +K+ SKV+ R+I  RDR  +HHF
Sbjct: 617 FLHSEKLAIALGLISTPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNREIVARDRSRFHHF 676

Query: 501 EDGSCSCLEYW 511
           ++GSCSC+++W
Sbjct: 677 KEGSCSCMDFW 687



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/367 (27%), Positives = 178/367 (48%), Gaps = 44/367 (11%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVC--GRVRDARWVFDESDDLDVVSWNSMINGYVRNGEI 58
           ++++    ++    + LI F ++   G +  AR +F +  + D    N+MI GY R+   
Sbjct: 33  LLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTMIRGYARSQNP 92

Query: 59  LEGLKLFDKMPQR----NDVSWNSILGGLVRFGSVD------------------------ 90
            E + L+  M +R    ++ ++  +L    R G+V                         
Sbjct: 93  YEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINAL 152

Query: 91  -----------DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD-LEPN 138
                       AC VF++   R +V+W ++I+     G  ++A  L  EM  LD L P+
Sbjct: 153 IQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPD 212

Query: 139 SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH 198
              +VSL+ ACAQLG L+ G +++SY ++  +  +  +  A++DMY KC  I+ A +VF+
Sbjct: 213 EVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFN 272

Query: 199 SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEK 258
              +KDV ++TS + GLA +G+  EA  LF+ M+   I  D I+ + VLSAC+  G +++
Sbjct: 273 RIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQTGALDQ 332

Query: 259 GFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
           G  Y H + D   I  +L     +VD+  + G ++ A      M ++ +   W  L+G  
Sbjct: 333 G-KYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVR-NVFTWNALIGGL 390

Query: 319 RVHRNAE 325
            +H + E
Sbjct: 391 AMHGHGE 397



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 94/223 (42%), Gaps = 39/223 (17%)

Query: 188 GSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVL 247
           G ++ A ++F    + D     + I G A + +  EA  L+  M  +G+  D+ +Y  VL
Sbjct: 59  GDLNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVL 118

Query: 248 SACSHLGWVEKGFYYFHSMFDVHGIKPEL-------------DHYACMVDLLGRA----- 289
           +AC+ LG V+ G   FH     +G   +L               + C  D+   +     
Sbjct: 119 AACARLGAVKLG-RRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDV 177

Query: 290 -------------GLLEEAENFIASMP----MKPDNVIWGTLLGACRVHRNAEMGQRIGN 332
                        GL E+A + +  M     ++PD V   +L+ AC    N E G+ + +
Sbjct: 178 VTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHS 237

Query: 333 MLIE--SDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKI 373
              E   D+N      +L ++Y +    E+A+EV   +R++ +
Sbjct: 238 YSKELGLDENLRVNNAIL-DMYCKCDDIESAQEVFNRIREKDV 279


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 232/550 (42%), Positives = 332/550 (60%), Gaps = 39/550 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V+K  F +DVFVK  L+  YS  G + DAR VFDE  + +VVSW ++I GY+ +G   E
Sbjct: 127 LVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGE 186

Query: 61  GLKLFD---KMPQRNDV-------------------SW-----------------NSILG 81
            L LF    +M  R D                     W                  S++ 
Sbjct: 187 ALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVD 246

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + GS+++A RVF+ M ++ +V W  LI G+A NG PKEAL +F EMQ  ++ P+   
Sbjct: 247 MYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYA 306

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           +V + SAC++LGAL+ GNW    +       + +L  ALID YAKCGS+  A +VF    
Sbjct: 307 MVGVFSACSRLGALELGNWARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMR 366

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
            KD   + + I GLAM GH   AF +F  M   G+ PD  +++ +L  C+H G V+ G  
Sbjct: 367 RKDCVVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCTHAGLVDDGHR 426

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           YF  M  V  + P ++HY CMVDL  RAGLL EA++ I SMPM+ ++++WG LLG CR+H
Sbjct: 427 YFSGMSSVFSVTPTIEHYGCMVDLQARAGLLVEAQDLIRSMPMEANSIVWGALLGGCRLH 486

Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
           ++ ++ + +   LIE +  + G Y+LLSNIY  + + + AE++R ++ ++ +++ PGCS 
Sbjct: 487 KDTQLAEHVLKQLIELEPWNSGHYVLLSNIYSASHRWDEAEKIRSSLNQKGMQKLPGCSW 546

Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIG 441
           +E+DGVVHEFL GD SH  + +IY+  E + K ++  GYN  T  V+FD+EEEEKE  +G
Sbjct: 547 VEVDGVVHEFLVGDTSHPLSHKIYEKLESLFKDLREAGYNPTTEFVLFDVEEEEKEYFLG 606

Query: 442 YHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
            HSEKLA+AF LI T    VIR+VKN+R+C DCH A+KLVSKV  R+I +RD   +HHF 
Sbjct: 607 CHSEKLAVAFALISTGAKDVIRVVKNLRVCGDCHEAIKLVSKVTGREIIVRDNNRFHHFT 666

Query: 502 DGSCSCLEYW 511
           +GSCSC +YW
Sbjct: 667 EGSCSCRDYW 676



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 112/240 (46%), Gaps = 3/240 (1%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136
           N +L   + F +   A  VF Q P  ++  +  LI G   N   ++A++++  M+     
Sbjct: 39  NLLLRSSLHFAATQYATVVFAQTPHPNIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFA 98

Query: 137 PNSAILVSLLSACAQLGA-LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ 195
           P++     +L AC +L      G  ++S + K     D  +   L+ +Y+K G +  A +
Sbjct: 99  PDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARK 158

Query: 196 VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGW 255
           VF    +K+V ++T+ I G   +G   EA  LF  +   G+ PDS + + +L ACS +G 
Sbjct: 159 VFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGD 218

Query: 256 VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
           +  G +    M +  G    +     +VD+  + G +EEA      M ++ D V W  L+
Sbjct: 219 LASGRWIDGYMRE-SGSVGNVFVATSLVDMYAKCGSMEEARRVFDGM-VEKDVVCWSALI 276



 Score = 42.7 bits (99), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 68/165 (41%), Gaps = 15/165 (9%)

Query: 173 DSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMK 232
           D+ L   L+       +   A  VF      ++  Y + I G+  N    +A  ++ +M+
Sbjct: 34  DTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNTLIRGMVSNDAFRDAVSVYASMR 93

Query: 233 SKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG--IKPELDH----YACMVDLL 286
             G +PD+ ++  VL AC+ L       +YFH    +H   IK   D        +V L 
Sbjct: 94  QHGFAPDNFTFPFVLKACTRLP------HYFHVGLSLHSLVIKTGFDWDVFVKTGLVCLY 147

Query: 287 GRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIG 331
            + G L +A      +P K + V W  ++  C    +   G+ +G
Sbjct: 148 SKNGFLTDARKVFDEIPEK-NVVSWTAII--CGYIESGCFGEALG 189


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 218/503 (43%), Positives = 323/503 (64%), Gaps = 7/503 (1%)

Query: 16  SLIQFYSVCGRVRDAR-------WVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM 68
           +L+   S C +++D R       +V +   + ++V  N+MI+ Y   GE+   L +F  M
Sbjct: 242 TLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSM 301

Query: 69  PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFR 128
             R+ +SW +I+ G    G +D A   F++MP++  VSW  +I G+ ++ R KEAL LFR
Sbjct: 302 NNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFR 361

Query: 129 EMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCG 188
            MQ+ +++P+   +VS+L+ACA LGAL+ G W+ +YI +  IK D  +  ALIDMY KCG
Sbjct: 362 NMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCG 421

Query: 189 SIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248
            +D A  +F     +D   +T+ I GLA+NGH  +A ++F NM    I PD I+YI VLS
Sbjct: 422 DVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLS 481

Query: 249 ACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDN 308
           AC+H G V+KG  YF  M   HGI+P + HY C+VDLL RAG L+EA   I +MP+K ++
Sbjct: 482 ACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANS 541

Query: 309 VIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTM 368
           ++WG LL  CRV+R ++M + +   ++E + ++   Y+LL NIY    +  +  E+R+ M
Sbjct: 542 IVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMM 601

Query: 369 RKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVM 428
             + IK+ PGCSLIE++G VHEF+AGDRSH +T+ I    +++ + +K  GY+ +   V 
Sbjct: 602 MDKGIKKXPGCSLIEMNGRVHEFVAGDRSHPQTKNIDAKLDKMTQDLKLAGYSPDISEVF 661

Query: 429 FDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRK 488
            DI EE+KE  +  HSEKLA+AFGLI + PG  IRI KN+R+C DCH+  KLVSKV+ R+
Sbjct: 662 LDIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRITKNLRMCMDCHNMAKLVSKVYNRE 721

Query: 489 ISIRDRKHYHHFEDGSCSCLEYW 511
           + +RDR  +HHF+ G CSC +YW
Sbjct: 722 VIVRDRTRFHHFKHGLCSCKDYW 744



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/384 (25%), Positives = 175/384 (45%), Gaps = 73/384 (19%)

Query: 25  GRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQR----NDVSWNSIL 80
           G  + AR +FDE  + ++  WN+MI GY R      G+ L+ +M +R    +  ++  + 
Sbjct: 87  GDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLF 146

Query: 81  GGLVR-----------------------------------FGSVDDACRVFNQMPKRSLV 105
            G  R                                    G +D A  VF+  PK  ++
Sbjct: 147 KGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVI 206

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           +W ++IS + + G+ +E+  LF  M+   + P +  LV +LSAC++L  L  G  V+SY+
Sbjct: 207 TWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYV 266

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNG------ 219
           +   ++ + +L  A+IDMYA CG +D A+ +F S  ++D+ ++T+ + G    G      
Sbjct: 267 KNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVAR 326

Query: 220 -------------------------HSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
                                       EA ELF NM++  + PD  + ++VL+AC+HLG
Sbjct: 327 NYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLG 386

Query: 255 WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTL 314
            +E G  +  +  D + IK +L     ++D+  + G +++AE+    M  + D   W  +
Sbjct: 387 ALELG-EWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQR-DKFTWTAM 444

Query: 315 LGACRVHRNAEMG-QRIGNMLIES 337
           +    V+ + E       NML  S
Sbjct: 445 IVGLAVNGHGEKALDMFSNMLKAS 468



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 113/244 (46%), Gaps = 8/244 (3%)

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
           +G    A R+F+++P+ +L  W  +I G+++   P+  ++L+ EM    ++P+      L
Sbjct: 86  YGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFL 145

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
                +  AL+YG  ++ ++ K  ++ +  +  AL+ MY  CG +D A  VF      DV
Sbjct: 146 FKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADV 205

Query: 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHS 265
             +   I      G   E+  LF  M+ K + P +++ + VLSACS L  +  G    HS
Sbjct: 206 ITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTG-KKVHS 264

Query: 266 MFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTL------LGACR 319
                 ++  L     M+D+    G ++ A     SM  + D + W T+      LG   
Sbjct: 265 YVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNR-DIISWTTIVSGFTNLGEID 323

Query: 320 VHRN 323
           V RN
Sbjct: 324 VARN 327


>gi|115473893|ref|NP_001060545.1| Os07g0662700 [Oryza sativa Japonica Group]
 gi|24414187|dbj|BAC22429.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113612081|dbj|BAF22459.1| Os07g0662700 [Oryza sativa Japonica Group]
 gi|125559498|gb|EAZ05034.1| hypothetical protein OsI_27217 [Oryza sativa Indica Group]
 gi|125601406|gb|EAZ40982.1| hypothetical protein OsJ_25464 [Oryza sativa Japonica Group]
          Length = 544

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 226/514 (43%), Positives = 335/514 (65%), Gaps = 6/514 (1%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++VK        V N+LIQ Y+  G V DAR VFD     D VS+NSMI+ +  +G+++ 
Sbjct: 34  LLVKLGLQPYARVHNALIQAYAASGLVDDARRVFDGMSHRDTVSFNSMIHAHAMSGDVVS 93

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
             +LF+++P    V+W S++ GL R G V  A R+F +MP R LVSW  ++SG A N RP
Sbjct: 94  ARRLFERVPSPTPVTWTSMVAGLCRAGDVAAARRLFEEMPVRDLVSWNAMMSGLAGNRRP 153

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK--LDSILCA 178
            EAL LFR M +    PN   ++S L+ACA  GAL+ G W+++++++K +    D  L  
Sbjct: 154 VEALCLFRRMMAEGFAPNRGTVLSALAACAGAGALETGKWIHAFVERKRLFRWWDEFLGT 213

Query: 179 ALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMK-SKGIS 237
           AL+DMYAKCG+++LA+ VF     ++   + + I GLAMNG+S +A ++F  M+  + + 
Sbjct: 214 ALLDMYAKCGAVELALDVFTKLRSRNTCTWNAMINGLAMNGYSAKALDMFRKMELDRTVV 273

Query: 238 PDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAEN 297
           PD ++++ VL ACSH G+V+ G  +FH +   +GI+  L+HYACMVDLL R+G L+EA  
Sbjct: 274 PDEVTFVGVLLACSHGGFVDVGREHFHMIEKKYGIRLILEHYACMVDLLARSGHLQEAHK 333

Query: 298 FIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLK 357
            IA MPMKPD V+W  LLG CR+H++ +M +     + E +    G ++LLSN+Y    +
Sbjct: 334 IIAGMPMKPDAVVWRALLGGCRLHKDVKMAE---TAISEMEATCSGDHVLLSNLYAAVGR 390

Query: 358 GENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKN 417
               E+VR+TMR + I++ PGCS IE++  +HEF++GD+SH    +I+    EI  +++ 
Sbjct: 391 WSGVEDVRRTMRSKGIEKIPGCSSIEINDSIHEFVSGDKSHPSYNDIHAKLAEISARMQQ 450

Query: 418 YGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSA 477
            GY  ET  V +D+EEEEKE  +G+HSEKLA+AFGLI   P   IRIVKN+R C+DCH  
Sbjct: 451 QGYVTETAEVFYDVEEEEKEQALGHHSEKLAIAFGLIGGPPNVAIRIVKNLRFCADCHKF 510

Query: 478 MKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            KLVS+++  +I +RDR  +HHF +G+CSC ++W
Sbjct: 511 AKLVSQIYHWEIVVRDRARFHHFTEGACSCNDFW 544


>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 227/511 (44%), Positives = 332/511 (64%), Gaps = 32/511 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VVK+ F  D ++ +SLI  Y+    +  A+ +F+     DVVSWN+MI+GYV++ E+   
Sbjct: 192 VVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHA 251

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
             +FD+M  R+ +SWN+++ G                               +A  G+P 
Sbjct: 252 RMVFDRMVCRDVISWNTMING-------------------------------YAICGKPN 280

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
           EALALF +M+++ ++P  A +VSLLSACA LGALD G  +++YI    I+++SI+  AL+
Sbjct: 281 EALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALV 340

Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
           DMYAKCG I LA QVF++   KDV A+ + I G+A++G+  EA +LF+ MK  G+ P+ I
Sbjct: 341 DMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDI 400

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
           +++A+LSACSH G V++G      M   +GI+P+++HY C++DLL RAG LEEA   I +
Sbjct: 401 TFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGT 460

Query: 302 MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361
           MPM+P+    G LLG CR+H N E+G+ +G  LI     H GRYILLSNIY    K ++A
Sbjct: 461 MPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDA 520

Query: 362 EEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKN-YGY 420
            +VR  M+   I + PG S+IEL G+VH F+AGD SH ++ +IY+   EI  ++K+  GY
Sbjct: 521 RKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGY 580

Query: 421 NVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKL 480
           + +T +V+ D+EEE+KE  +  HSEKLA+A+GL+       IRIVKN+R+C DCH  +KL
Sbjct: 581 SADTGNVLLDMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVIKL 640

Query: 481 VSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           +SKV+ R+I +RDR  +HHFEDG CSCL++W
Sbjct: 641 ISKVYGREIIVRDRNRFHHFEDGECSCLDFW 671



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 122/264 (46%), Gaps = 35/264 (13%)

Query: 98  QMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDY 157
           Q P  SL  +  LI   + +  P EAL L+  M    L+P+      ++ AC +     +
Sbjct: 127 QNPPPSL--YNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWF 184

Query: 158 GNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLA- 216
           G  V++++ K   + DS + ++LI +YA    +  A Q+F+    +DV ++ + I G   
Sbjct: 185 GLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVK 244

Query: 217 -------------------------MNGHSI-----EAFELFENMKSKGISPDSISYIAV 246
                                    +NG++I     EA  LF+ M++ G+ P   + +++
Sbjct: 245 HVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPTEATVVSL 304

Query: 247 LSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKP 306
           LSAC+HLG ++KG  + H+  + + I+        +VD+  + G +  A     +M  K 
Sbjct: 305 LSACAHLGALDKGL-HLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESK- 362

Query: 307 DNVIWGTLLGACRVHRNAEMGQRI 330
           D + W T++    +H N +  Q++
Sbjct: 363 DVLAWNTIIAGMAIHGNVKEAQQL 386



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 123/242 (50%), Gaps = 20/242 (8%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDV----VSWNSMINGYVRNG 56
           MV       DV   N++I  Y++CG+  +A  +FD+   + V     +  S+++     G
Sbjct: 253 MVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLG 312

Query: 57  EILEGLKLFDKMPQRNDVSWNSILGGLV-----RFGSVDDACRVFNQMPKRSLVSWVVLI 111
            + +GL L   +   N +  NSI+G  +     + G +  A +VFN M  + +++W  +I
Sbjct: 313 ALDKGLHLHTYI-NDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTII 371

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC-- 169
           +G A +G  KEA  LF+EM+   +EPN    V++LSAC+  G +D G  +   +      
Sbjct: 372 AGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGI 431

Query: 170 -IKLDSILCAALIDMYAKCGSIDLAMQVFHSYG-DKDVSAYTSAIFGLAMNGHSIEAFEL 227
             K++   C  +ID+ A+ G ++ AM++  +   + + SA  + + G  ++G+    FEL
Sbjct: 432 EPKVEHYGC--VIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGN----FEL 485

Query: 228 FE 229
            E
Sbjct: 486 GE 487



 Score = 42.7 bits (99), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 7/89 (7%)

Query: 193 AMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSH 252
           A  +FH   +   S Y S I  L+ +   +EA  L+  M   G+ PD ++Y  V+ AC+ 
Sbjct: 119 AKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACN- 177

Query: 253 LGWVEKGFYYFHSMFDVHGIKP--ELDHY 279
               E    +F  +   H +K   E D Y
Sbjct: 178 ----ESSVTWFGLLVHTHVVKSGFECDSY 202


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 237/543 (43%), Positives = 337/543 (62%), Gaps = 32/543 (5%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + +K  F  DVFV+ SL+  YS CG +  AR VFD   D DVV WNS+I+GY R GEI  
Sbjct: 137 LALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDI 196

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
            L+LF++MP+R+  SW  ++ GL + G V+ A ++F+QMP R+LVSW  +I+G+ ++G  
Sbjct: 197 ALQLFEEMPERDAFSWTVLVDGLSKCGKVESARKLFDQMPCRNLVSWNAMINGYMKSGDF 256

Query: 121 KEALALFREMQSLDL-------------------------------EPNSAILVSLLSAC 149
             AL LF +M   DL                                P+ A LVS+LSA 
Sbjct: 257 DSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAV 316

Query: 150 AQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYT 209
           + L  L  G W++SY++K   +LD IL  +LI+MYAKCG I+ A+ VF +   K V  +T
Sbjct: 317 SGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWT 376

Query: 210 SAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDV 269
           + I GL ++G +  A  LF  M   G+ P++I +I VL+AC+H G V+ G  YF  M + 
Sbjct: 377 AIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNE 436

Query: 270 HGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQR 329
           + I+P L+HY C+VD+L RAG LEEA+N I +MP+ P+ VIW +LLG  R H   ++G+ 
Sbjct: 437 YKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEY 496

Query: 330 IGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVH 389
               +IE      G YILLSN+Y  +   E    VR+ M KR  ++ PGCS +E  G +H
Sbjct: 497 AAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVEHKGTLH 556

Query: 390 EFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIE-EEEKETVIGYHSEKLA 448
           EF+ GD SH +T+EIY    E+ +K+K  G+  +T  V+  IE E+EKE  +  HSE+LA
Sbjct: 557 EFIVGDISHPQTKEIYAKMSEMKEKLKCVGHVPDTTQVLLCIEGEKEKEAELENHSERLA 616

Query: 449 LAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCL 508
           +AFGLI  KPG  IRI+KN+R+C+DCHS  KL+SK++ R+I +RD   +HHF++GSCSC+
Sbjct: 617 IAFGLINVKPGIPIRIMKNLRVCNDCHSVTKLLSKIYSREIIVRDNCRFHHFKNGSCSCM 676

Query: 509 EYW 511
           +YW
Sbjct: 677 DYW 679



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 105/225 (46%), Gaps = 15/225 (6%)

Query: 95  VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA 154
           +F+++ +RSL+ W  +I  + +N    + + LF E+    L P++  L  ++  CA+LG 
Sbjct: 69  IFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVHEYL-PDNFTLPCVIKGCARLGV 127

Query: 155 LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFG 214
           +  G  ++    K     D  +  +L++MY+KCG ID A +VF    DKDV  + S I G
Sbjct: 128 VQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDG 187

Query: 215 LAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP 274
            A  G    A +LFE M  +    D+ S+  ++   S  G VE     F  M       P
Sbjct: 188 YARCGEIDIALQLFEEMPER----DAFSWTVLVDGLSKCGKVESARKLFDQM-------P 236

Query: 275 --ELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
              L  +  M++   ++G  + A      MP+  D V W  ++  
Sbjct: 237 CRNLVSWNAMINGYMKSGDFDSALELFYQMPIW-DLVTWNLMIAG 280



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 145/334 (43%), Gaps = 51/334 (15%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRD---ARWVFDESDDLDVVSWNSMINGYVRNGEIL 59
           +K +     FV + L+  YS   ++ D   AR +FD      ++ WN++I  YV N    
Sbjct: 37  LKTAIFNHPFVSSRLLALYSD-PKINDLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSH 95

Query: 60  EGLKLFDKMPQR---NDVSWNSILGGLVRF------------------------------ 86
           +G+ LF ++      ++ +   ++ G  R                               
Sbjct: 96  DGIVLFHELVHEYLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVN 155

Query: 87  -----GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
                G +D A +VF+ M  + +V W  LI G+A+ G    AL LF EM   D   +  +
Sbjct: 156 MYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEMPERD-AFSWTV 214

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           LV  LS C   G ++    ++   Q  C  L S    A+I+ Y K G  D A+++F+   
Sbjct: 215 LVDGLSKC---GKVESARKLFD--QMPCRNLVSW--NAMINGYMKSGDFDSALELFYQMP 267

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
             D+  +   I G  +NG  ++A ++F  M   G  P   + ++VLSA S L  + KG  
Sbjct: 268 IWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKG-R 326

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA 295
           + HS  + +G + +      ++++  + G +E A
Sbjct: 327 WIHSYMEKNGFELDGILGTSLIEMYAKCGCIESA 360


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 242/586 (41%), Positives = 347/586 (59%), Gaps = 75/586 (12%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFD--ESDDLDVVSWNSMINGYVRNGEI 58
           M +K SF  DVFV NSLI FY+ CG +  A  VF+  E ++ D+VSWNSM+ G+V+ G  
Sbjct: 265 MAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYP 324

Query: 59  LEGLKLFDKMPQ----------------------------------RNDVSW-----NSI 79
            + L LF++M                                    RN++       N+ 
Sbjct: 325 DKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNAT 384

Query: 80  LGGLVRFGSVDDACRVFNQMPKRSLVSWV------------------------------- 108
           +   V+ G V+ A  +F+ M KR +VSW                                
Sbjct: 385 IDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWN 444

Query: 109 VLISGFAQNGRPKEALALFREMQ--SLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQ 166
           VLISG+ Q+GRPKEALA+FRE+Q       P+   L+S LSACAQLGA+D G W++ YI+
Sbjct: 445 VLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIK 504

Query: 167 KKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFE 226
           K+ I+L+  L  +LIDMY+K G ++ A++VFHS G+KDV  +++ I GLAM+G    A E
Sbjct: 505 KERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIE 564

Query: 227 LFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLL 286
           LF +M+   + P+S+++  +L ACSH G V++G   F  M  V+G+ P+  HY+CMVD+L
Sbjct: 565 LFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVPKTKHYSCMVDVL 624

Query: 287 GRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYI 346
           GRAG LEEA  FI  MP+ P   +WG LLGAC +H N E+ ++  + L+E +  + G Y+
Sbjct: 625 GRAGHLEEALKFIEGMPLAPSASVWGALLGACCIHGNLELAEKACSRLLEIEPGNHGAYV 684

Query: 347 LLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQ 406
           LLSN+Y +T   E   E+R+ MR   +K+  GCS IE+DG VHEF+ GD +H  +++IY 
Sbjct: 685 LLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCSSIEIDGTVHEFIVGDNAHPLSRDIYA 744

Query: 407 FWEEIVKKIKNYGYNVETRSVMFDIEEEE-KETVIGYHSEKLALAFGLICTKPGSVIRIV 465
             +EI+ +++++GY   T  ++  +EEEE KE  +  HSEK+A+AFGLI       IRIV
Sbjct: 745 KLDEIMARLRSHGYVANTLCMLQFVEEEEMKEKALKLHSEKMAIAFGLIRADSQQAIRIV 804

Query: 466 KNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           KN+R+C DCH+  K+VSKV+ R I +RDR  +HHF  G CSC +YW
Sbjct: 805 KNLRVCRDCHTVAKMVSKVYGRDIVLRDRYRFHHFSGGHCSCQDYW 850



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 163/372 (43%), Gaps = 79/372 (21%)

Query: 30  ARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNS----------- 78
           AR VFD+    ++ SWN +I     + + ++ + +F +M   +    N            
Sbjct: 192 ARKVFDQIPQPNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVA 251

Query: 79  -------------------------ILGGLVRF----GSVDDACRVFNQMP--KRSLVSW 107
                                    +L  L+ F    G +D A  VF  +    + +VSW
Sbjct: 252 ERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSW 311

Query: 108 VVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK 167
             +++GF Q G P +AL LF  M++  + PN+  +VS++SACA+   L  G  V  YI +
Sbjct: 312 NSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDR 371

Query: 168 KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLA-MNGHSIEAFE 226
             + ++  +C A IDM+ KCG +++A  +F +   +DV ++T+ I G A M+ H I A +
Sbjct: 372 NEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGI-ARD 430

Query: 227 LFENMKSK---------------------------------GISPDSISYIAVLSACSHL 253
           +F++M  K                                 G  PD ++ ++ LSAC+ L
Sbjct: 431 IFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQL 490

Query: 254 GWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGT 313
           G ++ G  + H       I+   +    ++D+  ++G +E+A     S+  K D  +W  
Sbjct: 491 GAMDIG-EWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNK-DVFVWSA 548

Query: 314 LLGACRVHRNAE 325
           ++    +H   E
Sbjct: 549 MIAGLAMHGRGE 560



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 116/233 (49%), Gaps = 5/233 (2%)

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALF-REMQSLDLEPNSAILVS 144
           F ++D A +VF+Q+P+ +L SW +LI   A +  P +++ +F R +      PN      
Sbjct: 186 FSALDYARKVFDQIPQPNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPV 245

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY--GD 202
           L+ A A+      G  V+    K     D  +  +LI  YA CG +DLA  VF      +
Sbjct: 246 LIKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNN 305

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           KD+ ++ S + G    G+  +A +LFE M+++G+ P++++ ++V+SAC+    +  G   
Sbjct: 306 KDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLG-RK 364

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
                D + +   L+     +D+  + G +E A     +M  K D V W T++
Sbjct: 365 VCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNME-KRDVVSWTTII 416


>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 640

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 231/512 (45%), Positives = 341/512 (66%), Gaps = 18/512 (3%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + +K  F  D FV ++L++ Y +CG ++DA  +F +  ++       MI+   R+GE+  
Sbjct: 146 LALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYK--NIIEREMVMMIDRRKRDGEV-- 201

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
                        V WN ++ G +R G    A  +F++M +RS+VSW  +ISG++QNG  
Sbjct: 202 -------------VLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFF 248

Query: 121 KEALALFREMQS-LDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
           K+A+ +FREM+   D+ PN   LVS+L A ++LG+L+ G W++ Y +   I++D +L +A
Sbjct: 249 KDAVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLGSA 308

Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
           LIDMY+KCG I+ A+ VF     ++V  +++ I G A++G + +A + F  M+  G+ P 
Sbjct: 309 LIDMYSKCGIIEKAIMVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPS 368

Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI 299
            ++YI +L+ACSH G VE+G  YF  M  V G++P ++HY CMVDLLGR GLL+EAE FI
Sbjct: 369 DVAYINLLTACSHAGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRLGLLDEAEEFI 428

Query: 300 ASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGE 359
            +MP+KPD+VIW  LLGACR+HRN EMG+R+ N+L++   +  G Y+ LSN+Y       
Sbjct: 429 LNMPIKPDDVIWKALLGACRMHRNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWS 488

Query: 360 NAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYG 419
              E+R  M++  I++ PGCS I++DGV+HEFL  D SH + +EI     EI  K++  G
Sbjct: 489 EVSEMRLRMKEMDIRKDPGCSWIDIDGVLHEFLVEDDSHPRAKEINSMLVEISDKLRLAG 548

Query: 420 YNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMK 479
           Y   T  V+ ++EEE+KE  + YHSEK+A AFGLI T PG  IRIVKN+RIC DCHS++K
Sbjct: 549 YRPITTQVLLNLEEEDKENALHYHSEKMATAFGLISTSPGKPIRIVKNLRICEDCHSSIK 608

Query: 480 LVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           L+SKV+KRKI++RDRK +HHF+DGSCSC++YW
Sbjct: 609 LISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 640



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 130/285 (45%), Gaps = 51/285 (17%)

Query: 89  VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKE--ALALFREMQSLD-LEPNSAILVSL 145
           +D A ++FNQMP+R+  SW  +I GF+++   K   A+ LF EM S + +EPN     S+
Sbjct: 68  LDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFPSV 127

Query: 146 LSACAQLG-----------ALDYG---------NWVYSYI-----QKKCIKL-------- 172
           L ACA+ G           AL YG         N V  Y+     +  C+          
Sbjct: 128 LKACAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIERE 187

Query: 173 ------------DSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGH 220
                       + +L   +ID Y + G    A  +F     + V ++ + I G + NG 
Sbjct: 188 MVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGF 247

Query: 221 SIEAFELFENM-KSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHY 279
             +A E+F  M K + I P+ ++ ++VL A S LG +E G  + H   +  GI+ +    
Sbjct: 248 FKDAVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLELG-EWLHLYAEDSGIRIDDVLG 306

Query: 280 ACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
           + ++D+  + G++E+A      +P + + + W  ++    +H  A
Sbjct: 307 SALIDMYSKCGIIEKAIMVFERLP-RENVITWSAMINGFAIHGQA 350


>gi|297817620|ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322531|gb|EFH52952.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 572

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 224/509 (44%), Positives = 327/509 (64%), Gaps = 38/509 (7%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D FV+ SL+  YS CG +  A  +FDES   D+ +WNS++N Y + G I    KLFD+MP
Sbjct: 95  DPFVRTSLLNMYSSCGDLSSALRIFDESVSKDLPAWNSVVNAYAKAGLINHARKLFDEMP 154

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE 129
           +RN +SW+ ++ G                               +   G+ KEAL LFRE
Sbjct: 155 ERNVISWSCLING-------------------------------YVMCGKYKEALDLFRE 183

Query: 130 MQ-----SLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMY 184
           MQ      + + PN   + ++LSAC +LGAL+ G WV+SYI K  +++D +L  ALIDMY
Sbjct: 184 MQLPKPNEVFVSPNKFTMSTVLSACGRLGALEQGKWVHSYIDKYGVEIDIVLGTALIDMY 243

Query: 185 AKCGSIDLAMQVFHSYGD-KDVSAYTSAIFGLAMNGHSIEAFELFENM-KSKGISPDSIS 242
           AKCGS++ A +VF + G  KDV AY++ I  LAM G + E F++F  M  S  I+P+S++
Sbjct: 244 AKCGSLERAKRVFDALGSKKDVKAYSAMICCLAMYGLTDECFQVFSEMTTSNNINPNSVT 303

Query: 243 YIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM 302
           ++ +L AC H G + KG  YF  M +  GI P + HY CMVDL GR+GL++EAE+FIASM
Sbjct: 304 FVGILGACVHRGLINKGKSYFKMMTEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASM 363

Query: 303 PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAE 362
           PM+PD +IWG+LL   R+  + +  +     LIE D  + G Y+LLSN+Y +T +    +
Sbjct: 364 PMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWIEVK 423

Query: 363 EVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNV 422
            +R  M  + IK+ PGCS +E++GVVHEF+ GD S ++++ IY   EEI+++++  GY  
Sbjct: 424 RIRHEMEVKGIKKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLEEIMQRLREAGYVS 483

Query: 423 ETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVS 482
           +T+ V+ D+EE++KE  + YHSEKLA+AF L+ T+PG+ +RI+KN+RIC DCH  MK++S
Sbjct: 484 DTKEVLLDLEEKDKEMALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMIS 543

Query: 483 KVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           K+F R+I +RD   +HHF DGSCSC ++W
Sbjct: 544 KLFSREIVVRDCNRFHHFSDGSCSCRDFW 572



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 115/266 (43%), Gaps = 48/266 (18%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +   S + D+   NS++  Y+  G +  AR +FDE  + +V+SW+ +INGYV  G+  E 
Sbjct: 118 IFDESVSKDLPAWNSVVNAYAKAGLINHARKLFDEMPERNVISWSCLINGYVMCGKYKEA 177

Query: 62  LKLFDKM--PQRNDV-------SWNSILGGLVRF-------------------------- 86
           L LF +M  P+ N+V       + +++L    R                           
Sbjct: 178 LDLFREMQLPKPNEVFVSPNKFTMSTVLSACGRLGALEQGKWVHSYIDKYGVEIDIVLGT 237

Query: 87  ---------GSVDDACRVFNQM-PKRSLVSWVVLISGFAQNGRPKEALALFREM-QSLDL 135
                    GS++ A RVF+ +  K+ + ++  +I   A  G   E   +F EM  S ++
Sbjct: 238 ALIDMYAKCGSLERAKRVFDALGSKKDVKAYSAMICCLAMYGLTDECFQVFSEMTTSNNI 297

Query: 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSIL-CAALIDMYAKCGSIDLAM 194
            PNS   V +L AC   G ++ G   +  + ++     SI     ++D+Y + G I  A 
Sbjct: 298 NPNSVTFVGILGACVHRGLINKGKSYFKMMTEEFGITPSIQHYGCMVDLYGRSGLIKEAE 357

Query: 195 QVFHSYG-DKDVSAYTSAIFGLAMNG 219
               S   + DV  + S + G  M G
Sbjct: 358 SFIASMPMEPDVLIWGSLLSGSRMLG 383


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/466 (46%), Positives = 315/466 (67%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N +++ Y   GE+ E   LF+KMPQR+ V+WN ++  L++ G  + A  +F++MP+R++ 
Sbjct: 167 NMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVR 226

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           SW  +I+G+ Q G+ KEA+ LF +M+   ++ N   +V++L+ACA LGALD G  ++ Y 
Sbjct: 227 SWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYS 286

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
            +   K +  +   LIDMY KCG ++ A +VF    ++ V ++++ I GLAM+G + EA 
Sbjct: 287 NRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEAL 346

Query: 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL 285
            LF +M   GI P+ +++I +L ACSH+G + +G  +F SM   +GI P+++HY CMVDL
Sbjct: 347 RLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDL 406

Query: 286 LGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRY 345
           L RAGLL EA  FI +MPMKP+ V+WG LLGACRVH+N EM +     L+E D  +DG Y
Sbjct: 407 LSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYY 466

Query: 346 ILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIY 405
           ++LSNIY E  + E+   VRK M+ R++K+ PG S I +DGVVHEF+AG+ SH  T++I+
Sbjct: 467 VVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIF 526

Query: 406 QFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIV 465
           Q WEE++++++  GY   T  V+ DIEE EK   +  HSEKLAL FGL+ T   + IRI+
Sbjct: 527 QRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLALVFGLMNTPAETPIRIM 586

Query: 466 KNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           KN+RIC DCHSA KL+S +  R+I +RDR  +H F D SCSC +YW
Sbjct: 587 KNLRICEDCHSAFKLISAIVNREIVVRDRNRFHCFNDNSCSCRDYW 632



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 108/255 (42%), Gaps = 33/255 (12%)

Query: 107 WVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQ 166
           W   +   A+   P +A+ LF  ++  D+ P++    S+L AC  L  L  G  ++  ++
Sbjct: 96  WNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVE 155

Query: 167 KKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD---------------------- 204
           K   + +  L   ++ +YA CG +  A  +F     +D                      
Sbjct: 156 KVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYD 215

Query: 205 ---------VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGW 255
                    V ++TS I G    G + EA  LF  M+  G+  + ++ +AVL+AC+ LG 
Sbjct: 216 LFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGA 275

Query: 256 VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
           ++ G    H   + HG K  +     ++D+  + G LEEA      M  +   V W  ++
Sbjct: 276 LDLGM-RIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEER-TVVSWSAMI 333

Query: 316 GACRVHRNAEMGQRI 330
           G   +H  AE   R+
Sbjct: 334 GGLAMHGRAEEALRL 348


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 213/466 (45%), Positives = 318/466 (68%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N++++ Y    ++    KLFD M  R+ VSW S+L GL R G VD+A  +F +MP+R  V
Sbjct: 184 NALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTV 243

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           SW  +I G+ Q  R +EAL +FREMQ  ++  +   +VS+++ACAQLGAL+ G WV  Y+
Sbjct: 244 SWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVYM 303

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
            ++ IK+D+ +  ALIDMY+KCGSI+ A+ VF     +D   +T+ I GLA+NG+  EA 
Sbjct: 304 SRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAI 363

Query: 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL 285
           E+F  M     +PD +++I VL+AC+H G V+KG  +F SM + + I P + HY C++DL
Sbjct: 364 EMFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMRETYNIAPNVVHYGCIIDL 423

Query: 286 LGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRY 345
            GRAG + EA + I  MPM P++ IWGTLL ACRVH N+E+G+ +   L++ D  +   Y
Sbjct: 424 FGRAGKITEALDAIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVTERLLQMDPENSTVY 483

Query: 346 ILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIY 405
            LLSNIY +  + E+   +R T+ ++ IK+ PGCSLIE++G++HEF+AGD+SH  ++EIY
Sbjct: 484 TLLSNIYAKCNRWEDVRRLRHTIMEKGIKKEPGCSLIEMNGIIHEFVAGDQSHPMSKEIY 543

Query: 406 QFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIV 465
              E I+  + N GY  +   V  ++ EEEK+ V+ +HSEKLA+AF L+ ++P +VIRIV
Sbjct: 544 CKLESIINDLNNVGYFPDVTEVFVEVAEEEKQKVLFWHSEKLAIAFALLSSEPNTVIRIV 603

Query: 466 KNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           KN+R+C DCH+A+KL+S+++ R++ +RDR  +HHF  G CSC +YW
Sbjct: 604 KNLRMCLDCHNAIKLISRLYGREVVVRDRTRFHHFRHGFCSCKDYW 649



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 105/253 (41%), Gaps = 34/253 (13%)

Query: 95  VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ-LG 153
           + ++  + + V W  LISG  +  R  EA   F +M      P     VS+LSAC +  G
Sbjct: 100 LLSERERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTG 159

Query: 154 ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC-------------------------- 187
            +  G  V+  +    +  D  +  AL+DMYA+C                          
Sbjct: 160 DVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLS 219

Query: 188 -----GSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSIS 242
                G +D A  +F    ++D  ++T+ I G        EA E+F  M+   +S D  +
Sbjct: 220 GLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFT 279

Query: 243 YIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM 302
            ++V++AC+ LG +E G  +        GIK +      ++D+  + G +E A +    M
Sbjct: 280 MVSVITACAQLGALEMG-EWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDM 338

Query: 303 PMKPDNVIWGTLL 315
             + D   W  ++
Sbjct: 339 HHR-DKFTWTAII 350



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 99/214 (46%), Gaps = 19/214 (8%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           +     D FV N+LI  YS CG +  A  VF +    D  +W ++I G   NG   E ++
Sbjct: 305 RQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIE 364

Query: 64  LFDKM----PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLISGF 114
           +F +M       ++V++  +L      G VD     F  M +      ++V +  +I  F
Sbjct: 365 MFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMRETYNIAPNVVHYGCIIDLF 424

Query: 115 AQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD- 173
            + G+  EAL    +M    + PNS I  +LL+AC   G  + G  V     ++ +++D 
Sbjct: 425 GRAGKITEALDAIDQMP---MTPNSTIWGTLLAACRVHGNSEIGELV----TERLLQMDP 477

Query: 174 --SILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
             S +   L ++YAKC   +   ++ H+  +K +
Sbjct: 478 ENSTVYTLLSNIYAKCNRWEDVRRLRHTIMEKGI 511


>gi|79456853|ref|NP_191848.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75116883|sp|Q683I9.1|PP295_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g62890
 gi|51968398|dbj|BAD42891.1| putative protein [Arabidopsis thaliana]
 gi|332646886|gb|AEE80407.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 573

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 219/504 (43%), Positives = 328/504 (65%), Gaps = 28/504 (5%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D FV+ SL+  YS CG +R A+ VFD+S   D+ +WNS++N Y + G I +  KLFD+MP
Sbjct: 96  DPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMP 155

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE 129
           +RN +SW+ ++ G V  G   +A  +F +M                Q  +P EA      
Sbjct: 156 ERNVISWSCLINGYVMCGKYKEALDLFREM----------------QLPKPNEAF----- 194

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
                + PN   + ++LSAC +LGAL+ G WV++YI K  +++D +L  ALIDMYAKCGS
Sbjct: 195 -----VRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGS 249

Query: 190 IDLAMQVFHSYGD-KDVSAYTSAIFGLAMNGHSIEAFELFENM-KSKGISPDSISYIAVL 247
           ++ A +VF++ G  KDV AY++ I  LAM G + E F+LF  M  S  I+P+S++++ +L
Sbjct: 250 LERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGIL 309

Query: 248 SACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPD 307
            AC H G + +G  YF  M +  GI P + HY CMVDL GR+GL++EAE+FIASMPM+PD
Sbjct: 310 GACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPD 369

Query: 308 NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKT 367
            +IWG+LL   R+  + +  +     LIE D  + G Y+LLSN+Y +T +    + +R  
Sbjct: 370 VLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHE 429

Query: 368 MRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSV 427
           M  + I + PGCS +E++GVVHEF+ GD S ++++ IY   +EI+++++  GY  +T+ V
Sbjct: 430 MEVKGINKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEV 489

Query: 428 MFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKR 487
           + D+ E++KE  + YHSEKLA+AF L+ T+PG+ +RI+KN+RIC DCH  MK++SK+F R
Sbjct: 490 LLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSR 549

Query: 488 KISIRDRKHYHHFEDGSCSCLEYW 511
           +I +RD   +HHF DGSCSC ++W
Sbjct: 550 EIVVRDCNRFHHFRDGSCSCRDFW 573



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 115/266 (43%), Gaps = 48/266 (18%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V  +S + D+   NS++  Y+  G + DAR +FDE  + +V+SW+ +INGYV  G+  E 
Sbjct: 119 VFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEA 178

Query: 62  LKLFDKMP---------QRNDVSWNSILGGLVRF-------------------------- 86
           L LF +M          + N+ + +++L    R                           
Sbjct: 179 LDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGT 238

Query: 87  ---------GSVDDACRVFNQM-PKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD-L 135
                    GS++ A RVFN +  K+ + ++  +I   A  G   E   LF EM + D +
Sbjct: 239 ALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNI 298

Query: 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSIL-CAALIDMYAKCGSIDLAM 194
            PNS   V +L AC   G ++ G   +  + ++     SI     ++D+Y + G I  A 
Sbjct: 299 NPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAE 358

Query: 195 QVFHSYG-DKDVSAYTSAIFGLAMNG 219
               S   + DV  + S + G  M G
Sbjct: 359 SFIASMPMEPDVLIWGSLLSGSRMLG 384



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 98/240 (40%), Gaps = 40/240 (16%)

Query: 107 WVVLISGFAQN-GRPKE--ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYS 163
           W ++I     N   P+    ++++  M++  + P+      LL +      L  G   ++
Sbjct: 27  WNIIIRAIVHNVSSPQRHSPISVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRTHA 86

Query: 164 YIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSA------------ 211
            I    +  D  +  +L++MY+ CG +  A +VF   G KD+ A+ S             
Sbjct: 87  QILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDD 146

Query: 212 -------------------IFGLAMNGHSIEAFELFENMK-----SKGISPDSISYIAVL 247
                              I G  M G   EA +LF  M+        + P+  +   VL
Sbjct: 147 ARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVL 206

Query: 248 SACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPD 307
           SAC  LG +E+G  + H+  D + ++ ++     ++D+  + G LE A+    ++  K D
Sbjct: 207 SACGRLGALEQG-KWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKD 265


>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 208/449 (46%), Positives = 306/449 (68%), Gaps = 1/449 (0%)

Query: 64  LFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEA 123
           LFD+MP  + VS  ++L      G++DDA R+F+ +P++  + W  +I G+ Q+G+P EA
Sbjct: 176 LFDEMPDPHVVSVTAMLTCYANMGALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEA 235

Query: 124 LALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQ-KKCIKLDSILCAALID 182
           L LFR M     EP+   +V +LSA AQLG ++ G W++SY++  +C++L+  +  AL+D
Sbjct: 236 LQLFRRMLRSSAEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRCVQLNVRVATALVD 295

Query: 183 MYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSIS 242
           MY KCGS++ A+ VFH  G+KD+  + + I G AM+G S +A E+F  ++ +G+ P  I+
Sbjct: 296 MYCKCGSLEDAVAVFHGIGNKDIVVWNAMINGYAMHGDSRKALEMFVQLRDQGLWPTDIT 355

Query: 243 YIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM 302
           +I +L+ACSH G VE+G  +F SM   +GI P+++HY CMVDLLGRAGL+EEA + + S+
Sbjct: 356 FIGLLNACSHSGLVEEGRSFFQSMEHEYGIDPKIEHYGCMVDLLGRAGLIEEAFHLVQSL 415

Query: 303 PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAE 362
            + PD V+W +LL ACR+H+N  +GQRI + L+ +   + G YILLSNIY    K E   
Sbjct: 416 TITPDAVMWVSLLAACRLHKNMALGQRIADFLVANGLANSGMYILLSNIYAAVGKWEEVA 475

Query: 363 EVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNV 422
            VR  M+   I++ PGCS IE+D  V+EF+AGD SH  T EIY   +++   +K +G+  
Sbjct: 476 RVRSMMKASGIQKEPGCSAIEIDRKVYEFVAGDMSHPCTDEIYAMLDKMNALVKEHGHVP 535

Query: 423 ETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVS 482
           +T  V+ D++E  KE  +  HSEKLA+AFGLI ++PGS I+IVKN+R CSDCH+ +KL+S
Sbjct: 536 QTELVLHDLDEATKEKALAVHSEKLAVAFGLISSRPGSTIKIVKNLRACSDCHAVLKLIS 595

Query: 483 KVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           K+  RKI  RDR  +HHF DGSC+C +YW
Sbjct: 596 KITSRKIVFRDRNRFHHFVDGSCTCGDYW 624



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 106/266 (39%), Gaps = 35/266 (13%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           G +D +  +  +    + + +   I   +  G     LAL  +M S  L P +  L + L
Sbjct: 70  GRLDHSLTLLGRTKDPTTIFYTSAIHAHSSRGLHLPGLALLSDMLSEGLLPTAHTLSASL 129

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDM----------------------- 183
            AC     L  G  +++Y  K  +  DS +  AL+ M                       
Sbjct: 130 PACR---GLSLGRALHAYAFKLALSGDSYVATALLSMYARAGDAAAARALFDEMPDPHVV 186

Query: 184 --------YAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG 235
                   YA  G++D A ++F     KD   + + I G   +G   EA +LF  M    
Sbjct: 187 SVTAMLTCYANMGALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRRMLRSS 246

Query: 236 ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA 295
             PD ++ + VLSA + LG VE G +    + +   ++  +     +VD+  + G LE+A
Sbjct: 247 AEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRCVQLNVRVATALVDMYCKCGSLEDA 306

Query: 296 ENFIASMPMKPDNVIWGTLLGACRVH 321
                 +  K D V+W  ++    +H
Sbjct: 307 VAVFHGIGNK-DIVVWNAMINGYAMH 331



 Score = 40.8 bits (94), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 3/110 (2%)

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           SLL+AC+        + +++ + +K +  D  +   L   YA  G +D ++ +     D 
Sbjct: 29  SLLAACSTA---RRASELHAAVVRKGLDSDRAVAFRLQRAYAASGRLDHSLTLLGRTKDP 85

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL 253
               YTSAI   +  G  +    L  +M S+G+ P + +  A L AC  L
Sbjct: 86  TTIFYTSAIHAHSSRGLHLPGLALLSDMLSEGLLPTAHTLSASLPACRGL 135


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 227/518 (43%), Positives = 316/518 (61%), Gaps = 38/518 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +VVK     D FV  SL+  Y  CG + +A                              
Sbjct: 133 LVVKAGCESDAFVNTSLVSLYGKCGFIDNA------------------------------ 162

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDA-------CRVFNQMPKRSLVSWVVLISG 113
             K+FD +P++N  +W +I+ G +  G   +A       C VF+ M ++ +VSW  +I G
Sbjct: 163 -FKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQG 221

Query: 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD 173
           +A NG PKEAL LF +M +    P+   +V +L ACA+LGAL+ GNW  + + +     +
Sbjct: 222 YASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGALELGNWASNLMDRNEFLGN 281

Query: 174 SILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKS 233
            +L  ALIDMYAKCG +D A +VF     KD+  + +AI GLAM+GH   AF LF  M+ 
Sbjct: 282 PVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAMSGHVKAAFGLFGQMEK 341

Query: 234 KGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLE 293
            GI PD  +++ +L AC+H G V++G  YF+SM  V  + PE++HY CMVDLLGRAG L+
Sbjct: 342 SGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTPEIEHYGCMVDLLGRAGFLD 401

Query: 294 EAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYV 353
           EA   + SMPM+ + ++WG LLG CR+HR+ ++ + +   LI  + ++ G Y+LLSNIY 
Sbjct: 402 EAHQLVKSMPMEANAIVWGALLGGCRLHRDTQLVEGVLKQLIALEPSNSGNYVLLSNIYS 461

Query: 354 ETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVK 413
            + K E+A ++R  M +R IK+ PG S IE+DGVVHEFL GD SH  +++IY    E+VK
Sbjct: 462 ASHKWEDAAKIRSIMSERGIKKVPGYSWIEVDGVVHEFLVGDTSHPLSEKIYAKLGELVK 521

Query: 414 KIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSD 473
            +K  GY   T  V+FDIEEEEKE  IG HSEKLA+AFGLI T P   IR+VKN+R+C D
Sbjct: 522 DLKASGYVPTTDYVLFDIEEEEKEHFIGCHSEKLAIAFGLISTAPNDKIRVVKNLRVCGD 581

Query: 474 CHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           CH A+K +S+   R+I +RD   +H F DGSCSC +YW
Sbjct: 582 CHEAIKHISRFTGREIIVRDNNRFHCFNDGSCSCKDYW 619



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 120/273 (43%), Gaps = 40/273 (14%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136
           N +L     FG+ + + R+F+Q  + ++  +  +I G   N   +E++ ++  M+   L 
Sbjct: 46  NKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTMIHGLVLNDSFQESIEIYHSMRKEGLS 105

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
           P+S     LL ACA+L     G  ++  + K   + D+ +  +L+ +Y KCG ID A +V
Sbjct: 106 PDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKV 165

Query: 197 FHSYGDKDVSAYT--------------------------------------SAIFGLAMN 218
           F    +K+V+A+T                                      S I G A N
Sbjct: 166 FDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASN 225

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDH 278
           G   EA +LF  M ++G  PD  + + VL AC+ LG +E G  +  ++ D +        
Sbjct: 226 GLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGALELG-NWASNLMDRNEFLGNPVL 284

Query: 279 YACMVDLLGRAGLLEEAENFIASMPMKPDNVIW 311
              ++D+  + G ++ A      M  K D V+W
Sbjct: 285 GTALIDMYAKCGRMDSAWEVFRGM-RKKDIVVW 316



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 90/196 (45%), Gaps = 11/196 (5%)

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
           M SL L  ++ I + L      L  L +   V++ + +  +  DS L   ++      G+
Sbjct: 1   MSSLILNKSAHIKIRLFQGFNSLKHLKH---VHAALLRLGLDEDSYLLNKVLRFSFNFGN 57

Query: 190 IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
            + + ++FH   + ++  + + I GL +N    E+ E++ +M+ +G+SPDS ++  +L A
Sbjct: 58  TNYSHRIFHQTKEPNIFLFNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKA 117

Query: 250 CSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNV 309
           C+ L   + G    H +    G + +      +V L G+ G ++ A      +P K +  
Sbjct: 118 CARLLDSKLGI-KLHGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEK-NVA 175

Query: 310 IWGTLL------GACR 319
            W  ++      G CR
Sbjct: 176 AWTAIISGYIGVGKCR 191


>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 218/467 (46%), Positives = 315/467 (67%), Gaps = 1/467 (0%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           NS+++ Y + G      KLFD+M  R+ VSWN+++ G    G VD A  VF+ M +++LV
Sbjct: 166 NSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLV 225

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLD-LEPNSAILVSLLSACAQLGALDYGNWVYSY 164
           SW  +ISG+A+N +  +A+ LFR+MQ    L PN   LVS+LSACA LGALD G W++ +
Sbjct: 226 SWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRF 285

Query: 165 IQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEA 224
           I++  I++   L  AL DMYAKCG +  A  VFH   ++DV +++  I GLAM G++ EA
Sbjct: 286 IRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEA 345

Query: 225 FELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVD 284
           F  F  M   G+ P+ IS++ +L+AC+H G V+KG  YF  M  V+GI P+++HY C+VD
Sbjct: 346 FNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVD 405

Query: 285 LLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGR 344
           LL RAG L++AE+ I SMPM+P+ ++WG LLG CR++++AE G+R+   ++E D NH G 
Sbjct: 406 LLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGS 465

Query: 345 YILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEI 404
            + L+N+Y    + ++A   R  MR  K  + PGCS IE++  V+EF  GD SH ++  I
Sbjct: 466 LVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQSLRI 525

Query: 405 YQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRI 464
           Y    E+  K+K  GY  +T  V+ +I+EEEKE  +  HSEKLALAFGLI T  G+ IRI
Sbjct: 526 YSMIRELKWKMKVAGYKPKTDLVIHNIDEEEKEDALSTHSEKLALAFGLINTSEGTTIRI 585

Query: 465 VKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           VKN+R+C+DCH A+K++SK+ +R+I +RDR  +HHF+DG CSC +YW
Sbjct: 586 VKNLRVCNDCHDAIKIISKIVEREIVVRDRSRFHHFKDGKCSCNDYW 632



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 117/264 (44%), Gaps = 37/264 (14%)

Query: 87  GSVDDACRVFNQ-MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA--ILV 143
           G++  +  +FN  +   ++ ++  L+  F+Q+      ++ F     L   PN       
Sbjct: 72  GNLRHSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFT 131

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS-------------- 189
           S+L ACA L  +  G  V+ ++ K   + +  +  +L+D+Y K G               
Sbjct: 132 SVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVR 191

Query: 190 -----------------IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMK 232
                            +D A  VF    +K++ ++++ I G A N    +A ELF  M+
Sbjct: 192 DVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQ 251

Query: 233 SK-GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGL 291
            + G++P+ ++ ++VLSAC+HLG ++ G  + H     + I+  L     + D+  + G 
Sbjct: 252 HEGGLAPNDVTLVSVLSACAHLGALDLG-KWIHRFIRRNKIEVGLFLGNALADMYAKCGC 310

Query: 292 LEEAENFIASMPMKPDNVIWGTLL 315
           + EA+     M  + D + W  ++
Sbjct: 311 VLEAKGVFHEMHER-DVISWSIII 333


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 234/583 (40%), Positives = 346/583 (59%), Gaps = 72/583 (12%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           M VK++   DVFV NSLI  Y  CG +  A  VF    + DVVSWNSMING+V+ G   +
Sbjct: 156 MAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDK 215

Query: 61  GLKLFDKMP----------------------------------QRNDVS-----WNSILG 81
            L+LF KM                                   + N V+      N++L 
Sbjct: 216 ALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLD 275

Query: 82  GLVRFGSVDDACRVF-------------------------------NQMPKRSLVSWVVL 110
              + GS++DA R+F                               N MP++ +V+W  L
Sbjct: 276 MYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNAL 335

Query: 111 ISGFAQNGRPKEALALFREMQ-SLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC 169
           IS + QNG+P EAL +F E+Q   +++ N   LVS LSACAQ+GAL+ G W++SYI+K  
Sbjct: 336 ISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHG 395

Query: 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFE 229
           I+++  + +ALI MY+KCG ++ + +VF+S   +DV  +++ I GLAM+G   EA ++F 
Sbjct: 396 IRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFY 455

Query: 230 NMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRA 289
            M+   + P+ +++  V  ACSH G V++    FH M   +GI PE  HYAC+VD+LGR+
Sbjct: 456 KMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRS 515

Query: 290 GLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLS 349
           G LE+A  FI +MP+ P   +WG LLGAC++H N  + +     L+E +  +DG ++LLS
Sbjct: 516 GYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLS 575

Query: 350 NIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWE 409
           NIY +  K EN  E+RK MR   +K+ PGCS IE+DG++HEFL+GD +H  ++++Y    
Sbjct: 576 NIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLH 635

Query: 410 EIVKKIKNYGYNVETRSVMFDIEEEE-KETVIGYHSEKLALAFGLICTKPGSVIRIVKNI 468
           E+++K+K+ GY  E   V+  IEEEE KE  +  HSEKLA+ +GLI T+   VIR++KN+
Sbjct: 636 EVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKVIRVIKNL 695

Query: 469 RICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           R+C DCHS  KL+S+++ R+I +RDR  +HHF +G CSC ++W
Sbjct: 696 RVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 128/260 (49%), Gaps = 3/260 (1%)

Query: 80  LGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQS-LDLEPN 138
           +  L  F S++ A +VF+++PK +  +W  LI  +A    P  ++  F +M S     PN
Sbjct: 71  MAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPN 130

Query: 139 SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH 198
                 L+ A A++ +L  G  ++    K  +  D  +  +LI  Y  CG +D A +VF 
Sbjct: 131 KYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFT 190

Query: 199 SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEK 258
           +  +KDV ++ S I G    G   +A ELF+ M+S+ +    ++ + VLSAC+ +  +E 
Sbjct: 191 TIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEF 250

Query: 259 GFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
           G     S  + + +   L     M+D+  + G +E+A+    +M  K DNV W T+L   
Sbjct: 251 G-RQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEK-DNVTWTTMLDGY 308

Query: 319 RVHRNAEMGQRIGNMLIESD 338
            +  + E  + + N + + D
Sbjct: 309 AISEDYEAAREVLNSMPQKD 328


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 212/548 (38%), Positives = 335/548 (61%), Gaps = 39/548 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +++    DV V N L+  Y+ CG V  A  +F+     DV SWN++I GY  N +  E L
Sbjct: 248 IRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEAL 307

Query: 63  KLFDKMPQR---------------------------------------NDVSWNSILGGL 83
             F++M  R                                       NDV  N+++   
Sbjct: 308 AFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMY 367

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
            + G+V+ A ++F +MPK+++V+W  +ISG++Q+G P EALALF EMQ+  ++P+S  +V
Sbjct: 368 AKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIV 427

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           S+L ACA   AL+ G  ++ Y  +   + + ++   L+D+YAKCG+++ A ++F    ++
Sbjct: 428 SVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQ 487

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           DV ++T+ I    ++GH  +A  LF  M+  G   D I++ A+L+ACSH G V++G  YF
Sbjct: 488 DVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYF 547

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
             M   +G+ P+L+HYAC+VDLLGRAG L+EA   I +M ++PD  +WG LLGACR+H N
Sbjct: 548 QCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCN 607

Query: 324 AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE 383
            E+G++    L E D ++ G Y+LLSNIY E  + E+  ++RK M+++ +K+ PGCS++ 
Sbjct: 608 IELGEQAAKHLFELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVA 667

Query: 384 LDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYH 443
           +   V  FL GDR+H ++++IY   E + ++++  GY   T   + D+EEE KE ++  H
Sbjct: 668 VHRDVQTFLVGDRTHPQSEQIYAMLEILYEQMRKAGYVPNTNLALQDVEEEAKENILSSH 727

Query: 444 SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
           SEKLA++FG+I T PG  IRI+KN+R+CSDCH+A K +SK+  R+I +RD   +HH ++G
Sbjct: 728 SEKLAISFGIINTSPGIPIRIMKNLRVCSDCHNATKFISKIVGREIIVRDANRFHHVKNG 787

Query: 504 SCSCLEYW 511
            CSC +YW
Sbjct: 788 FCSCGDYW 795



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 118/364 (32%), Positives = 188/364 (51%), Gaps = 43/364 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++   F  DV V  +L   Y+ CG + +AR VFD     DVVSWN++I GY +NG+  E 
Sbjct: 146 IIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEA 205

Query: 62  LKLFDKMPQRNDVSWNS------------------------------------ILGGLV- 84
           L LF +M Q N +  NS                                    ++ GLV 
Sbjct: 206 LALFSEM-QVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVN 264

Query: 85  ---RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G+V+ A ++F +MP R + SW  +I G++ N +  EALA F  MQ   ++PNS  
Sbjct: 265 MYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSIT 324

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           +VS+L ACA L AL+ G  ++ Y  +   + + ++  AL++MYAKCG+++ A ++F    
Sbjct: 325 MVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMP 384

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
            K+V A+ + I G + +GH  EA  LF  M+++GI PDS + ++VL AC+H   +E+G  
Sbjct: 385 KKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQG-K 443

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
             H      G +  +     +VD+  + G +  A+     MP + D V W T++ A  +H
Sbjct: 444 QIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMP-EQDVVSWTTMILAYGIH 502

Query: 322 RNAE 325
            + E
Sbjct: 503 GHGE 506



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 99/324 (30%), Positives = 168/324 (51%), Gaps = 49/324 (15%)

Query: 41  DVVSWNSMINGYVRNGEILEGLKLFDKMPQ------------------------------ 70
           + V W   I GYV+NG   + L+L+ +M +                              
Sbjct: 84  NAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVH 143

Query: 71  --------RNDVSWNSILGGL-VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
                    +DV   + L  +  + GS+++A +VF++MPKR +VSW  +I+G++QNG+P 
Sbjct: 144 EDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPY 203

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
           EALALF EMQ   ++PNS+ LVS++  CA L AL+ G  ++ Y  +  I+ D ++   L+
Sbjct: 204 EALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLV 263

Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
           +MYAKCG+++ A ++F     +DV+++ + I G ++N    EA   F  M+ +GI P+SI
Sbjct: 264 NMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSI 323

Query: 242 SYIAVLSACSHLGWVEKG----FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAEN 297
           + ++VL AC+HL  +E+G     Y   S F+ + +         +V++  + G +  A  
Sbjct: 324 TMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGN-----ALVNMYAKCGNVNSAYK 378

Query: 298 FIASMPMKPDNVIWGTLLGACRVH 321
               MP K + V W  ++     H
Sbjct: 379 LFERMP-KKNVVAWNAIISGYSQH 401



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 110/217 (50%), Gaps = 2/217 (0%)

Query: 101 KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNW 160
           + + V W   I G+ +NG   +AL L+ +MQ   + P+  + +S++ AC     L  G  
Sbjct: 82  RNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRK 141

Query: 161 VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGH 220
           V+  I  +  + D I+  AL  MY KCGS++ A QVF     +DV ++ + I G + NG 
Sbjct: 142 VHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQ 201

Query: 221 SIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA 280
             EA  LF  M+  GI P+S + ++V+  C+HL  +E+G    H      GI+ ++    
Sbjct: 202 PYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQG-KQIHCYAIRSGIESDVLVVN 260

Query: 281 CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
            +V++  + G +  A      MP++ D   W  ++G 
Sbjct: 261 GLVNMYAKCGNVNTAHKLFERMPIR-DVASWNAIIGG 296


>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 216/472 (45%), Positives = 320/472 (67%), Gaps = 1/472 (0%)

Query: 41  DVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMP 100
           DV   NS+++ Y   G I    ++F +MP R+ VSW S++ G  + G V+DA  +F++MP
Sbjct: 153 DVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVAGYCKCGMVEDAREMFDEMP 212

Query: 101 KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNW 160
            R+L +W ++I+G+A+N   ++A+ LF  M+   +  N  ++VS++S+CA LGAL++G  
Sbjct: 213 HRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVMVSVISSCAHLGALEFGER 272

Query: 161 VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGH 220
            + Y+ K  + ++ IL  AL+DMY +CG I+ A++VF    DKD  +++S I GLA++GH
Sbjct: 273 AHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEELPDKDSLSWSSIIKGLAVHGH 332

Query: 221 SIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA 280
           + +A   F  M   G SP  I+  AVLSACSH G V+KG   + +M   +GI+P L+HY 
Sbjct: 333 AHKAIHYFSQMVRLGFSPRDITLTAVLSACSHGGLVDKGLEIYENMKRDYGIEPRLEHYG 392

Query: 281 CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQN 340
           C+VD+LGRAG L EAENFI  MP+KP+  I G LLGAC++++N E+ +R+GNMLIE    
Sbjct: 393 CIVDMLGRAGKLAEAENFILKMPVKPNAPILGALLGACKIYKNTEVAERVGNMLIEVKPE 452

Query: 341 HDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAG-DRSHE 399
           H G Y+LLSNIY    + E  E +R  M+++ +K+ PG SLIE+DG +++F  G D+ H 
Sbjct: 453 HSGYYVLLSNIYACAGQWEKLESLRDIMKEKLVKKPPGWSLIEIDGKINKFSMGDDQKHP 512

Query: 400 KTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPG 459
           +  +I + WEEI+ KI+  GY   T    FD++EEEKET I  HSEKLA+A+G++ TK G
Sbjct: 513 EMGKIKRLWEEILGKIRLIGYKGNTGDAFFDVDEEEKETAIHMHSEKLAIAYGMMKTKTG 572

Query: 460 SVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           + IRIVKN+R+C DCH+A KL+S+V+ R+  +RDR  +HHF +G CSC +YW
Sbjct: 573 TTIRIVKNLRVCEDCHTATKLISEVYGREFIVRDRNRFHHFRNGLCSCRDYW 624



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 119/261 (45%), Gaps = 33/261 (12%)

Query: 95  VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA 154
           +F+Q+   +L  + VLI  F+    P +A   + +M    + P++     L+ A  ++  
Sbjct: 75  IFSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEMEC 134

Query: 155 LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFG 214
           +  G   +S I +   + D  +  +L+ MYA CG I  A ++F     +DV ++TS + G
Sbjct: 135 VVVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVAG 194

Query: 215 --------------------------LAMNGHSI-----EAFELFENMKSKGISPDSISY 243
                                     + +NG++      +A +LFE MK +G+  +    
Sbjct: 195 YCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVM 254

Query: 244 IAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP 303
           ++V+S+C+HLG +E G      +   H +   L     +VD+  R G +E+A      +P
Sbjct: 255 VSVISSCAHLGALEFGERAHEYVVKSH-MTVNLILGTALVDMYWRCGEIEKAIRVFEELP 313

Query: 304 MKPDNVIWGTLLGACRVHRNA 324
            K D++ W +++    VH +A
Sbjct: 314 DK-DSLSWSSIIKGLAVHGHA 333


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 224/548 (40%), Positives = 322/548 (58%), Gaps = 41/548 (7%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           K     DV+V   LI  YS CG+    R +FD+ D  D++S+N+MI+GY  N E    + 
Sbjct: 242 KKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVT 301

Query: 64  LFDKMPQRNDVSWNSILGGLV--------------------------------------- 84
           LF ++        +S L GL+                                       
Sbjct: 302 LFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYC 361

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
           R   V  A ++F++ P++SL SW  +ISG+ QNG    A++LF+EM    L PN   + S
Sbjct: 362 RLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMP-QLSPNPVTVTS 420

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           +LSACAQLGAL  G WV+  I+ + ++ +  +  AL+DMYAKCGSI  A Q+F    DK+
Sbjct: 421 ILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKN 480

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           V  + + I G  ++GH  EA +LF  M   GI P  ++++++L ACSH G V +G   FH
Sbjct: 481 VVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFH 540

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
           SM + +G +P  +HYACMVD+LGRAG L  A  FI  MP++P   +WG LLGAC +H+N 
Sbjct: 541 SMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNT 600

Query: 325 EMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIEL 384
           EM       L + D  + G Y+LLSNIY        A  VR+ ++KRK+ + PGC+LIE+
Sbjct: 601 EMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEI 660

Query: 385 DGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVET-RSVMFDIEEEEKETVIGYH 443
           D   + F +GDRSH +   I++  E++  K++  GY  ET  + + D+E+EEKE ++  H
Sbjct: 661 DDQQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVH 720

Query: 444 SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
           SEKLA+AFGLI TKPG+ IRI+KN+R+C DCH+A K +SK+ +R I +RD   +HHF++G
Sbjct: 721 SEKLAIAFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNG 780

Query: 504 SCSCLEYW 511
            CSC +YW
Sbjct: 781 ICSCGDYW 788



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 85/375 (22%), Positives = 167/375 (44%), Gaps = 44/375 (11%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           + +  A ++FV ++++  Y    R   AR VFD   + D V WN+MI+G+ RN    + +
Sbjct: 140 IVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSI 199

Query: 63  KLFDKMPQRNDVSWNS------------------------------------ILGGLVR- 85
           ++F  M     +S++S                                    +L GL+  
Sbjct: 200 RVFVDMLDVG-LSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISL 258

Query: 86  FGSVDDACR---VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
           +     +C+   +F+Q+ +  L+S+  +ISG+  N   + A+ LFRE+ +     NS+ L
Sbjct: 259 YSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTL 318

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           V L+        L     + +   K  I L   +  AL  +Y +   +  A Q+F    +
Sbjct: 319 VGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPE 378

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           K ++++ + I G   NG +  A  LF+ M  + +SP+ ++  ++LSAC+ LG +  G  +
Sbjct: 379 KSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIG-KW 436

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
            H +     ++  +     +VD+  + G + EA      M  K + V W  ++    +H 
Sbjct: 437 VHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDK-NVVTWNAMITGYGLHG 495

Query: 323 NAEMGQRIGNMLIES 337
           + +   ++   +++S
Sbjct: 496 HGKEALKLFYEMLQS 510



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 61/279 (21%), Positives = 115/279 (41%), Gaps = 40/279 (14%)

Query: 9   YDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM 68
           YD+     L   +   G V   R +F++    D+  +N +I G+  NG     + L+  +
Sbjct: 44  YDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHL 103

Query: 69  PQRND-----------------------------------VSWNSILGGLV-----RFGS 88
            +  +                                   V+ N  +G  +     +F  
Sbjct: 104 RKXTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTR 163

Query: 89  VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148
            + A +VF+ MP+R  V W  +ISGF++N   ++++ +F +M  + L  +S  L ++L+A
Sbjct: 164 AELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTA 223

Query: 149 CAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAY 208
            A+L     G  +     KK +  D  +   LI +Y+KCG       +F      D+ +Y
Sbjct: 224 VAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISY 283

Query: 209 TSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVL 247
            + I G   N  +  A  LF  + + G   +S + + ++
Sbjct: 284 NAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLI 322



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 89/169 (52%), Gaps = 1/169 (0%)

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM-QSLDLEPNSAILVS 144
            G+V    ++FN++ K  L  + VLI GF+ NG PK ++ L+  + +  +L P++     
Sbjct: 59  LGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAF 118

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
            +SA ++L     G  ++++     +  +  + +A++D+Y K    +LA +VF    ++D
Sbjct: 119 AISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERD 178

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL 253
              + + I G + N +  ++  +F +M   G+S DS +   VL+A + L
Sbjct: 179 TVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAEL 227


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 224/548 (40%), Positives = 322/548 (58%), Gaps = 41/548 (7%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           K     DV+V   LI  YS CG+    R +FD+ D  D++S+N+MI+GY  N E    + 
Sbjct: 242 KKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVT 301

Query: 64  LFDKMPQRNDVSWNSILGGLV--------------------------------------- 84
           LF ++        +S L GL+                                       
Sbjct: 302 LFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYC 361

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
           R   V  A ++F++ P++SL SW  +ISG+ QNG    A++LF+EM    L PN   + S
Sbjct: 362 RLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMP-QLSPNPVTVTS 420

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           +LSACAQLGAL  G WV+  I+ + ++ +  +  AL+DMYAKCGSI  A Q+F    DK+
Sbjct: 421 ILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKN 480

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           V  + + I G  ++GH  EA +LF  M   GI P  ++++++L ACSH G V +G   FH
Sbjct: 481 VVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFH 540

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
           SM + +G +P  +HYACMVD+LGRAG L  A  FI  MP++P   +WG LLGAC +H+N 
Sbjct: 541 SMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNT 600

Query: 325 EMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIEL 384
           EM       L + D  + G Y+LLSNIY        A  VR+ ++KRK+ + PGC+LIE+
Sbjct: 601 EMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEI 660

Query: 385 DGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVET-RSVMFDIEEEEKETVIGYH 443
           D   + F +GDRSH +   I++  E++  K++  GY  ET  + + D+E+EEKE ++  H
Sbjct: 661 DDQQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVH 720

Query: 444 SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
           SEKLA+AFGLI TKPG+ IRI+KN+R+C DCH+A K +SK+ +R I +RD   +HHF++G
Sbjct: 721 SEKLAIAFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNG 780

Query: 504 SCSCLEYW 511
            CSC +YW
Sbjct: 781 ICSCGDYW 788



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 85/375 (22%), Positives = 167/375 (44%), Gaps = 44/375 (11%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           + +  A ++FV ++++  Y    R   AR VFD   + D V WN+MI+G+ RN    + +
Sbjct: 140 IVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSI 199

Query: 63  KLFDKMPQRNDVSWNS------------------------------------ILGGLVR- 85
           ++F  M     +S++S                                    +L GL+  
Sbjct: 200 RVFVDMLDVG-LSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISL 258

Query: 86  FGSVDDACR---VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
           +     +C+   +F+Q+ +  L+S+  +ISG+  N   + A+ LFRE+ +     NS+ L
Sbjct: 259 YSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTL 318

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           V L+        L     + +   K  I L   +  AL  +Y +   +  A Q+F    +
Sbjct: 319 VGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPE 378

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           K ++++ + I G   NG +  A  LF+ M  + +SP+ ++  ++LSAC+ LG +  G  +
Sbjct: 379 KSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIG-KW 436

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
            H +     ++  +     +VD+  + G + EA      M  K + V W  ++    +H 
Sbjct: 437 VHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDK-NVVTWNAMITGYGLHG 495

Query: 323 NAEMGQRIGNMLIES 337
           + +   ++   +++S
Sbjct: 496 HGKEALKLFYEMLQS 510



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/279 (21%), Positives = 116/279 (41%), Gaps = 40/279 (14%)

Query: 9   YDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM 68
           YD+     L   +   G V   R +F++    D+  +N +I G+  NG     + L+  +
Sbjct: 44  YDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHL 103

Query: 69  PQRND-----------------------------------VSWNSILGGLV-----RFGS 88
            ++ +                                   V+ N  +G  +     +F  
Sbjct: 104 RKKTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTR 163

Query: 89  VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148
            + A +VF+ MP+R  V W  +ISGF++N   ++++ +F +M  + L  +S  L ++L+A
Sbjct: 164 AELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTA 223

Query: 149 CAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAY 208
            A+L     G  +     KK +  D  +   LI +Y+KCG       +F      D+ +Y
Sbjct: 224 VAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISY 283

Query: 209 TSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVL 247
            + I G   N  +  A  LF  + + G   +S + + ++
Sbjct: 284 NAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLI 322



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 89/169 (52%), Gaps = 1/169 (0%)

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM-QSLDLEPNSAILVS 144
            G+V    ++FN++ K  L  + VLI GF+ NG PK ++ L+  + +  +L P++     
Sbjct: 59  LGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAF 118

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
            +SA ++L     G  ++++     +  +  + +A++D+Y K    +LA +VF    ++D
Sbjct: 119 AISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERD 178

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL 253
              + + I G + N +  ++  +F +M   G+S DS +   VL+A + L
Sbjct: 179 TVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAEL 227


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 207/466 (44%), Positives = 318/466 (68%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N +++ Y   GEI    K+FDKMPQR+ ++WN ++  LV+ G  + A ++F +MP+R++ 
Sbjct: 152 NMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVR 211

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           SW  +I G+AQ G+ KEA+ LF EM+   L PN   +V++L ACA +G L  G  ++ + 
Sbjct: 212 SWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFS 271

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
            +   + +  +C  LIDMY KCG ++ A ++F +  ++ V ++++ I GLA +G + +A 
Sbjct: 272 NRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDAL 331

Query: 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL 285
            LF  M + G+ P+++++I +L ACSH+G VEKG  YF SM   +GI P ++HY CMVDL
Sbjct: 332 ALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDL 391

Query: 286 LGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRY 345
             RAGLL+EA  FI +MP+ P+ V+WG LLG C+VH+N ++ +     L + D  +DG Y
Sbjct: 392 FSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNIKLAEEATRHLSKLDPLNDGYY 451

Query: 346 ILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIY 405
           ++LSNIY E  + E+   VRK MR R +K+ PG S I ++GVV+ F+AGD +H +T+EI+
Sbjct: 452 VVLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGWSSIMVEGVVYNFVAGDDTHPQTEEIF 511

Query: 406 QFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIV 465
           Q WE++++++K  GY   T  V+ D+EE++KE  +  HSEKLA+ FGLI T PG+VIRI+
Sbjct: 512 QTWEKLLQRMKLKGYVPNTSVVLLDMEEDQKEKFLYRHSEKLAVVFGLIKTTPGTVIRIM 571

Query: 466 KNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           KN+R+C DCH+A+K++S V  R+I +RDR  +H F++GSCSC +YW
Sbjct: 572 KNLRVCEDCHAALKIISVVSTREIVVRDRNRFHCFKNGSCSCGDYW 617



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 120/274 (43%), Gaps = 33/274 (12%)

Query: 95  VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA 154
           +F  +    +  W   +  FA+   P +A++LF  ++  D+ P+      +L AC++L  
Sbjct: 69  IFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLD 128

Query: 155 LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD---------- 204
           +  G  V+ Y++K  ++ +  L   ++ +YA CG I +A +VF     +D          
Sbjct: 129 VRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIAR 188

Query: 205 ---------------------VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISY 243
                                V ++TS I G A  G S EA +LF  M+  G+ P+ ++ 
Sbjct: 189 LVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTV 248

Query: 244 IAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP 303
           +AVL AC+ +G +  G    H   +  G +  +     ++D+  + G LE+A     +M 
Sbjct: 249 VAVLVACADMGNLVLG-RRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNME 307

Query: 304 MKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIES 337
            +   V W  ++     H  AE    + N +I +
Sbjct: 308 ER-TVVSWSAMIAGLAAHGRAEDALALFNKMINT 340


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 214/550 (38%), Positives = 336/550 (61%), Gaps = 39/550 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + +K  F +  +V   LI  YS CG V  AR +F   +  D++++N+MI+G+  NG    
Sbjct: 234 LALKIGFGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTEC 293

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVR----FGSVDDACRV--------------------- 95
            +KLF ++    +   +S + GL+     FG +  AC +                     
Sbjct: 294 SVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTA 353

Query: 96  --------------FNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
                         F++ P++++V+W  +ISG+ QNG  + A++LF+EM   +  PN+  
Sbjct: 354 IYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVT 413

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           + ++LSACAQLG+L +G WV+  I+ + ++ +  +  AL+DMYAKCG+I  A Q+F S  
Sbjct: 414 ITTILSACAQLGSLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMS 473

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
           +K+   + + IFG  ++G+  EA +L+  M   G +P ++++++VL ACSH G V +G  
Sbjct: 474 EKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGEE 533

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            FH+M + + I+P ++HYACMVD+LGR+G LE+A  FI  MP++P   +WGTLLGAC +H
Sbjct: 534 IFHNMVNKYRIEPLIEHYACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGACMIH 593

Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
           ++ ++ +     L E D    G Y+LLSNIY        A  +R+ ++KRK+ ++PGC+L
Sbjct: 594 KDTDIARLASERLFELDPGSVGYYVLLSNIYSVERNFPKAASIRQVVKKRKLAKSPGCTL 653

Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIG 441
           IE++G  H F++GDRSH    +IY   E++  K++  GY  ET   + D+EEEEKE  + 
Sbjct: 654 IEVNGTPHVFVSGDRSHSHATDIYAKLEKLTGKMREMGYQAETVPALHDVEEEEKELAVN 713

Query: 442 YHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
            HSEKLA+AFGLI T+PG+ IRI+KN+R+C DCH+A K +SK+ +R I +RD   +HHF+
Sbjct: 714 VHSEKLAIAFGLITTEPGNEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFK 773

Query: 502 DGSCSCLEYW 511
           DG CSC +YW
Sbjct: 774 DGICSCGDYW 783



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/306 (21%), Positives = 122/306 (39%), Gaps = 44/306 (14%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           + N + +D+     L Q        R AR +F      D+  +N ++ G+  N      +
Sbjct: 36  ILNGYRFDLATLTKLTQKLFDFSATRHARALFFSVPKPDIFLFNVLVRGFSLNDSPSSSI 95

Query: 63  KLFDKMPQRNDVSWN-----------------------SILGGL--------------VR 85
            L+  + +  ++S +                       SI+ G                +
Sbjct: 96  SLYTHLRRNTNLSPDNFTYAFAVAACSNDKHLMLLHAHSIIDGYGSNVFVGSALVDLYCK 155

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
           F  V  A +VF+ MP+R  V W  +I+G  +N    +++ LFREM +  +  +S+ + ++
Sbjct: 156 FSRVVYARKVFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAV 215

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
           L A A+L  L  G  +     K        +   LI +Y+KCG ++ A  +F      D+
Sbjct: 216 LPAAAELQELKVGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPDL 275

Query: 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHS 265
            AY + I G   NG +  + +LF  +   G    S + + ++   S  G       + H 
Sbjct: 276 IAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPFG-------HLHL 328

Query: 266 MFDVHG 271
              +HG
Sbjct: 329 ACSIHG 334


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 212/502 (42%), Positives = 324/502 (64%), Gaps = 1/502 (0%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DVF   +++  +   G + +A  +F+E  + + VSWN+MI GYV++ +I +  +LFD+MP
Sbjct: 276 DVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMP 335

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE 129
            RN  SWN+++ G  + G++D A  +F++MP+R  +SW  +ISG+AQ+G+ +EAL LF +
Sbjct: 336 SRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIK 395

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
           M+      N + L   LS+CA++ AL+ G  ++  + K   +   I   AL+ MY KCGS
Sbjct: 396 MKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGS 455

Query: 190 IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
           I+ A  VF    +KD+ ++ + I G A +G   EA  LFE+MK   I PD ++ + VLSA
Sbjct: 456 IEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKMT-IKPDDVTLVGVLSA 514

Query: 250 CSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNV 309
           CSH G+V+KG  YF+SM+  +GI     HY CM+DLLGRAG L+EA N + SMP  PD  
Sbjct: 515 CSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAA 574

Query: 310 IWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMR 369
            WG LLGA R+H + E+G++    + E + ++ G Y+LLSN+Y  + +     E+R  MR
Sbjct: 575 TWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMR 634

Query: 370 KRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMF 429
            + +K+ PG S +E+    H F  GD SH + + IY + EE+  ++K  G+   T+ V+ 
Sbjct: 635 DKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLEELDLELKKDGFVSSTKLVLH 694

Query: 430 DIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKI 489
           D+EEEEKE ++ YHSEKLA+AFG++   PG  IR++KN+R+C DCH+A+K +SK+ +R+I
Sbjct: 695 DVEEEEKEHMLKYHSEKLAVAFGILSIPPGRPIRVIKNLRVCEDCHNAIKHISKITQRQI 754

Query: 490 SIRDRKHYHHFEDGSCSCLEYW 511
            +RD   +HHF +GSCSC +YW
Sbjct: 755 IVRDSNRFHHFSEGSCSCGDYW 776



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/321 (28%), Positives = 159/321 (49%), Gaps = 15/321 (4%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           M+VKN  ++     N L+  Y   GR+ DAR +FD   D ++VSWN ++ GYVR   + +
Sbjct: 179 MLVKNEISW-----NGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDD 233

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
              LFD+MP R+ +SWN ++ G  + G + +A R+F ++P R + +W  ++SGF QNG  
Sbjct: 234 ARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGML 293

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
            EA  +F EM     E N     ++++   Q   ++    ++  +  +    ++     +
Sbjct: 294 DEATRIFEEMP----EKNEVSWNAMIAGYVQSQQIEKARELFDQMPSR----NTSSWNTM 345

Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           +  YA+CG+ID A  +F     +D  ++ + I G A +G S EA  LF  MK  G   + 
Sbjct: 346 VTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNR 405

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
            +    LS+C+ +  +E G    H      G +        ++ + G+ G +EEA +   
Sbjct: 406 SALACALSSCAEIAALELG-KQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFE 464

Query: 301 SMPMKPDNVIWGTLLGACRVH 321
            +  K D V W T++     H
Sbjct: 465 DITEK-DIVSWNTMIAGYARH 484



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 153/304 (50%), Gaps = 24/304 (7%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDV 74
           N++I  Y    +   AR VF++  D D++SWN M++GYV+NG +     LF++MP+++ V
Sbjct: 95  NAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVV 154

Query: 75  SWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD 134
           SWN++L G  + G V++A ++F+QM  ++ +SW  L+S + QNGR ++A  LF     +D
Sbjct: 155 SWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFD--SKMD 212

Query: 135 LEPNSAILVS---LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSID 191
            E     +VS   L+    +   LD    ++  +  +    D I    +I  YA+ G + 
Sbjct: 213 WE-----IVSWNCLMGGYVRKKRLDDARSLFDRMPVR----DKISWNIMITGYAQNGLLS 263

Query: 192 LAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS 251
            A ++F     +DV A+T+ + G   NG   EA  +FE M  K    + +S+ A+++   
Sbjct: 264 EARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEK----NEVSWNAMIAGYV 319

Query: 252 HLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIW 311
               +EK    F  M            +  MV    + G +++A+     MP + D + W
Sbjct: 320 QSQQIEKARELFDQM-----PSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQR-DCISW 373

Query: 312 GTLL 315
             ++
Sbjct: 374 AAMI 377



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 136/281 (48%), Gaps = 22/281 (7%)

Query: 39  DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQ 98
           D D+V WN  I+ Y+R G+    L +F+ M +R+ V++N+++ G +     D A +VF +
Sbjct: 57  DSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEK 116

Query: 99  MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
           MP R L+SW V++SG+ +NG    A ALF +M   D+   +A    +LS  AQ G ++  
Sbjct: 117 MPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNA----MLSGFAQNGFVEEA 172

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
             ++  +  K    + I    L+  Y + G I+ A ++F S  D ++ ++   + G    
Sbjct: 173 RKIFDQMLVK----NEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRK 228

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDH 278
               +A  LF+ M  +    D IS+  +++  +  G + +    F  +       P  D 
Sbjct: 229 KRLDDARSLFDRMPVR----DKISWNIMITGYAQNGLLSEARRLFEEL-------PIRDV 277

Query: 279 YA--CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
           +A   MV    + G+L+EA      MP K + V W  ++  
Sbjct: 278 FAWTAMVSGFVQNGMLDEATRIFEEMPEK-NEVSWNAMIAG 317



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 80/165 (48%), Gaps = 11/165 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +VK  F       N+L+  Y  CG + +A  VF++  + D+VSWN+MI GY R+G   E 
Sbjct: 431 LVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEA 490

Query: 62  LKLFDKMP---QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLISG 113
           L LF+ M    + +DV+   +L      G VD     FN M +   ++     +  +I  
Sbjct: 491 LALFESMKMTIKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDL 550

Query: 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
             + GR  EAL L   M+S+   P++A   +LL A    G  + G
Sbjct: 551 LGRAGRLDEALNL---MKSMPFYPDAATWGALLGASRIHGDTELG 592


>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 598

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 213/511 (41%), Positives = 320/511 (62%), Gaps = 33/511 (6%)

Query: 3   VKNSFAYDVFVKNSLIQFYS-VCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+   A  + V N+LI+ ++ + GR+ DA  +   S  +D  ++N++I  + R G     
Sbjct: 119 VRLGLAGFLLVNNALIRVHAGLLGRLADAHLLLRTSAAVDASTFNTLITAHARAGR---- 174

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
                                      V DA  +F++MP+R+ VSW  +++G+ Q G  +
Sbjct: 175 ---------------------------VADARSLFDEMPERNAVSWSAMVNGYVQAGDGR 207

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
           EAL +F +MQ+  + P+  +LV +L+ACAQLGAL+ G WV+ Y++   I++   L  AL+
Sbjct: 208 EALGVFSQMQAQGVRPDDTVLVGVLAACAQLGALEQGKWVHGYLKANNIRMTVFLGTALV 267

Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
           DMYAKCG + L M+VF    DK+V A+T+ I GLAM+G   ++  LF  M+S G+ PD I
Sbjct: 268 DMYAKCGEVQLGMEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVKPDDI 327

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
           ++I  L AC+H G V+KG   F+SM + +GIKP+++HY CMVDLL R GLL EA + +  
Sbjct: 328 AFIGALCACTHTGLVDKGRELFNSMVNNYGIKPKIEHYGCMVDLLARNGLLSEARDMVEK 387

Query: 302 MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361
           MPMKPD +IWG L+  CR H+N E+ + +    IE + +  G Y+LL NIY  + +  +A
Sbjct: 388 MPMKPDALIWGALMAGCRFHKNVELAEYVIKHWIELEPDKSGAYVLLGNIYSASGRHASA 447

Query: 362 EEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIK-NYGY 420
            E+R  MR++ +++ PGCS +E+ GV+H+F+ GD SH + ++I   W EI  +I+   GY
Sbjct: 448 REIRNLMREKGVEKTPGCSNVEIKGVIHQFIVGDLSHPRIKDILTKWYEIDSRIRLEEGY 507

Query: 421 NVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKL 480
             + + V+ DIEEEE E+ +  HSEKLA+AF LI T+    IRIVKN+R+C DCH   KL
Sbjct: 508 VPDKKEVLLDIEEEEMESALSRHSEKLAIAFALISTEDYMPIRIVKNLRVCQDCHHVTKL 567

Query: 481 VSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           +SKV+ R+I +RDR  +H F+DG+CSC +YW
Sbjct: 568 ISKVYGREIIVRDRTRFHLFKDGTCSCKDYW 598



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 126/290 (43%), Gaps = 74/290 (25%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++++ S A D    N+LI  ++  GRV DAR +FDE  + + VSW++M+NGYV+ G+  E
Sbjct: 149 LLLRTSAAVDASTFNTLITAHARAGRVADARSLFDEMPERNAVSWSAMVNGYVQAGDGRE 208

Query: 61  GLKLFDKMPQRNDVSWNSILGGLV------------------------------------ 84
            L +F +M  +     +++L G++                                    
Sbjct: 209 ALGVFSQMQAQGVRPDDTVLVGVLAACAQLGALEQGKWVHGYLKANNIRMTVFLGTALVD 268

Query: 85  ---RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G V     VF  M  +++++W  +I G A +GR  ++L LF +M+S  ++P+   
Sbjct: 269 MYAKCGEVQLGMEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVKPDDIA 328

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
            +  L AC   G +D G  +++                                + ++YG
Sbjct: 329 FIGALCACTHTGLVDKGRELFN-------------------------------SMVNNYG 357

Query: 202 DKD-VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250
            K  +  Y   +  LA NG   EA ++ E M  K   PD++ + A+++ C
Sbjct: 358 IKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMK---PDALIWGALMAGC 404



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 58/267 (21%), Positives = 107/267 (40%), Gaps = 40/267 (14%)

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           A  V + + +RS      LI   A +GRP+ AL L+  +    L P    L SLL + A 
Sbjct: 41  AALVTSGLLRRSAELHDALIRAHASSGRPQAALPLYAHLIRAGLFPTPHTLPSLLKSLAL 100

Query: 152 LGALDYGNWVYSYIQKKCIKL------------------------------------DSI 175
             A+     +   +    ++L                                    D+ 
Sbjct: 101 SPAVPGARRLALAVHAHAVRLGLAGFLLVNNALIRVHAGLLGRLADAHLLLRTSAAVDAS 160

Query: 176 LCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG 235
               LI  +A+ G +  A  +F    +++  ++++ + G    G   EA  +F  M+++G
Sbjct: 161 TFNTLITAHARAGRVADARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQAQG 220

Query: 236 ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA 295
           + PD    + VL+AC+ LG +E+G  + H     + I+  +     +VD+  + G ++  
Sbjct: 221 VRPDDTVLVGVLAACAQLGALEQG-KWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLG 279

Query: 296 ENFIASMPMKPDNVI-WGTLLGACRVH 321
                   MK  NV+ W T++    +H
Sbjct: 280 MEVFEG--MKDKNVLAWTTMIKGLAMH 304


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 214/510 (41%), Positives = 325/510 (63%), Gaps = 32/510 (6%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +K+ F  D +V+NSL+  Y+  G +  AR V                             
Sbjct: 144 IKHGFEQDFYVQNSLVHMYASVGDINAARSV----------------------------- 174

Query: 63  KLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKE 122
             F +M + + VSW  ++ G  R G    A  +F++MP+R+LV+W  +ISG+A+N   ++
Sbjct: 175 --FQRMCRFDVVSWTCMIAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEK 232

Query: 123 ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182
           A+  F  +Q+  +  N  ++V ++S+CA LGAL  G   + Y+ +  + L+ IL  A++D
Sbjct: 233 AVETFEALQAEGVVANETVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVVD 292

Query: 183 MYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSIS 242
           MYA+CG+++ A+ VF    +KDV  +T+ I GLAM+G++ +A   F  M  KG  P  I+
Sbjct: 293 MYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDIT 352

Query: 243 YIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM 302
           + AVL+ACSH G VE+G   F SM   HG++P L+HY CMVDLLGRAG L +AE F+  M
Sbjct: 353 FTAVLTACSHAGMVERGLEIFESMKRDHGVEPRLEHYGCMVDLLGRAGKLRKAEKFVLKM 412

Query: 303 PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAE 362
           P+KP+  IW  LLGACR+H+N E+G+R+G +L+E    + G Y+LLSNIY    K ++  
Sbjct: 413 PVKPNAPIWRALLGACRIHKNVEVGERVGKILLEMQPEYSGHYVLLSNIYARANKWKDVT 472

Query: 363 EVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIV-KKIKNYGYN 421
            +R+ M+ + +++ PG SLIE+DG VHEF  GD++H + ++I + WE+I+  KIK  GY 
Sbjct: 473 VMRQMMKDKGVRKPPGYSLIEIDGKVHEFTIGDKTHPEIEKIERIWEDIILPKIKLAGYV 532

Query: 422 VETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLV 481
             T   MFDI+EEEKE  +  HSEKLA+A+G++  +  + IRIVKN+R+C DCH+A KL+
Sbjct: 533 GNTAETMFDIDEEEKEGALHRHSEKLAIAYGIMKIRAPTPIRIVKNLRVCEDCHTATKLI 592

Query: 482 SKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           SKVF+ ++ +RDR  +HHF++G+CSC++YW
Sbjct: 593 SKVFEVELIVRDRNRFHHFKEGTCSCMDYW 622



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 111/265 (41%), Gaps = 33/265 (12%)

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           A RV +Q+   +L  +  LI G + +  P+ +   + +     L P++     L+ ACAQ
Sbjct: 70  AIRVASQIQNPNLFIYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQ 129

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVF-------------- 197
           L     G   +    K   + D  +  +L+ MYA  G I+ A  VF              
Sbjct: 130 LENAPMGMQTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCM 189

Query: 198 ----HSYGD-------------KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
               H  GD             +++  +++ I G A N    +A E FE ++++G+  + 
Sbjct: 190 IAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANE 249

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
              + V+S+C+HLG +  G    H     + +   L     +VD+  R G +E+A     
Sbjct: 250 TVMVGVISSCAHLGALAMG-EKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFE 308

Query: 301 SMPMKPDNVIWGTLLGACRVHRNAE 325
            +P K D + W  L+    +H  AE
Sbjct: 309 QLPEK-DVLCWTALIAGLAMHGYAE 332



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 74/159 (46%), Gaps = 16/159 (10%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V++N  + ++ +  +++  Y+ CG V  A  VF++  + DV+ W ++I G   +G   + 
Sbjct: 275 VMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMHGYAEKA 334

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQM-------PKRSLVSWVVL 110
           L  F +M ++     D+++ ++L      G V+    +F  M       P+      +V 
Sbjct: 335 LWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFESMKRDHGVEPRLEHYGCMVD 394

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
           + G A   R  E   L      + ++PN+ I  +LL AC
Sbjct: 395 LLGRAGKLRKAEKFVL-----KMPVKPNAPIWRALLGAC 428


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 213/496 (42%), Positives = 323/496 (65%), Gaps = 8/496 (1%)

Query: 16  SLIQFYSVCGRVRDA--------RWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDK 67
           +L+   S C +++D         +++ +   + +++  N++I+ +   GE+     +FD+
Sbjct: 241 TLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDE 300

Query: 68  MPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALF 127
           M  R+ +SW SI+ G      +D A + F+QMP+R  VSW  +I G+ +  R KE L LF
Sbjct: 301 MKTRDVISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLF 360

Query: 128 REMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC 187
           R+MQ  +++P+   +VS+L+ACA LGAL+ G W  +YI K  IK D+ +  ALIDMY KC
Sbjct: 361 RDMQMSNVKPDEFTMVSILTACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKC 420

Query: 188 GSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVL 247
           G+++ A ++F+    KD   +T+ I GLA NGH  EA  +F  M    ++PD I+YI V+
Sbjct: 421 GNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVM 480

Query: 248 SACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPD 307
            AC+H+G V KG ++F +M   HGIKP L HY CMVDLLGRAG L+EA   I +MP+KP+
Sbjct: 481 CACTHVGLVAKGKHFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPVKPN 540

Query: 308 NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKT 367
           +++WG+LLGACRVH+N ++ +   N ++E +  +   Y+LL NIY    K +N   VRK 
Sbjct: 541 SIVWGSLLGACRVHKNVQLAEMAANEILELEPENGAVYVLLCNIYAACKKWKNLHNVRKM 600

Query: 368 MRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSV 427
           M +R IK+ PGCSL+E++G+V+EF+AGD+SH +++EIY   E + + + N GY+ +T  V
Sbjct: 601 MMERGIKKIPGCSLMEMNGIVYEFVAGDKSHPQSKEIYAKLENMKQDLSNAGYSPDTSEV 660

Query: 428 MFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKR 487
             D+ EE+KET +  HSEKLA+A+ LI +  G  IRIVKN+R+C DCH    +VSKV+ R
Sbjct: 661 FLDVGEEDKETALYMHSEKLAIAYALISSGKGVTIRIVKNLRMCVDCHHMAMVVSKVYNR 720

Query: 488 KISIRDRKHYHHFEDG 503
           ++ +RD+  +HHF  G
Sbjct: 721 ELIVRDKTRFHHFRHG 736



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 71/155 (45%), Gaps = 12/155 (7%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           KN    D F+ N+LI  Y  CG V  A+ +F+E    D  +W +MI G   NG   E L 
Sbjct: 400 KNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGHGEEALT 459

Query: 64  LFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMP-----KRSLVSWVVLISGF 114
           +F  M +     +++++  ++      G V      F+ M      K +L  +  ++   
Sbjct: 460 MFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNLTHYGCMVDLL 519

Query: 115 AQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
            + G  KEAL +   M    ++PNS +  SLL AC
Sbjct: 520 GRAGHLKEALEVIMNMP---VKPNSIVWGSLLGAC 551



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/274 (20%), Positives = 114/274 (41%), Gaps = 41/274 (14%)

Query: 55  NGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGF 114
           +G++    K+FD++PQ +   WN+                               +I G+
Sbjct: 82  SGDVYYARKVFDEIPQPSVFIWNT-------------------------------MIKGY 110

Query: 115 AQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDS 174
           ++    +  ++L++ M   +++P+      LL    +  AL YG  + ++       LDS
Sbjct: 111 SRINCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKDMALKYGKVLLNHAVIHGF-LDS 169

Query: 175 ILCA--ALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMK 232
            L      I +++ CG ++ A ++F      +V  +   + G        E+  LF  M+
Sbjct: 170 NLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEME 229

Query: 233 SK--GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAG 290
            K   +SP+S++ + +LSACS L  +  G   ++       ++P L     ++D+    G
Sbjct: 230 KKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCG 289

Query: 291 LLEEAENFIASMPMKPDNVIWGTLL----GACRV 320
            ++ A      M  + D + W +++      CR+
Sbjct: 290 EMDAARGVFDEMKTR-DVISWTSIVTGFANTCRI 322


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 231/583 (39%), Positives = 346/583 (59%), Gaps = 72/583 (12%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           M +K++   DVFV NSLI  Y  CG +  A  VF    + DVVSWNSMING+V+ G   +
Sbjct: 158 MAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDK 217

Query: 61  GLKLFDKMPQRN-------------------DVSW--------------------NSILG 81
            L+LF KM   +                   D+ +                    N++L 
Sbjct: 218 ALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLD 277

Query: 82  GLVRFGSVDDACRVF-------------------------------NQMPKRSLVSWVVL 110
              + GS++DA R+F                               N MPK+ +V+W  L
Sbjct: 278 MYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNAL 337

Query: 111 ISGFAQNGRPKEALALFREMQ-SLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC 169
           IS + QNG+P EAL +F E+Q   +++ N   LVS LSACAQ+GAL+ G W++SYI+K  
Sbjct: 338 ISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHSYIKKNG 397

Query: 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFE 229
           IK++  + +ALI MY+KCG ++ A +VF+S   +DV  +++ I GLAM+G   EA ++F 
Sbjct: 398 IKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFY 457

Query: 230 NMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRA 289
            M+   + P+ +++  V  ACSH G V++    F+ M   +GI PE  HYAC+VD+LGR+
Sbjct: 458 KMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMESSYGIVPEDKHYACIVDVLGRS 517

Query: 290 GLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLS 349
           G LE+A  FI +MP+ P   +WG LLGAC++H N  + +     L+E +  +DG ++LLS
Sbjct: 518 GYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLSLAEMACTRLLELEPRNDGAHVLLS 577

Query: 350 NIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWE 409
           NIY ++ K +N  E+RK MR   +K+ PGCS IE+DG++HEFL+GD +H  ++++Y    
Sbjct: 578 NIYAKSGKWDNVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLH 637

Query: 410 EIVKKIKNYGYNVETRSVMFDIEEEE-KETVIGYHSEKLALAFGLICTKPGSVIRIVKNI 468
           E+++K+K+ GY  E   V+  IEEEE KE  +  HSEKLA+ +GLI T+    IR++KN+
Sbjct: 638 EVMEKLKSNGYEPEMSHVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKAIRVIKNL 697

Query: 469 RICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           R+C DCH+  KL+S+++ R+I +RDR  +HHF +G CSC ++W
Sbjct: 698 RMCGDCHAVAKLISQLYNREIIVRDRYRFHHFRNGQCSCNDFW 740



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 130/261 (49%), Gaps = 4/261 (1%)

Query: 80  LGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE--P 137
           +  L  F S++ A +VF+++P+ +  +W  LI  +A    P  ++  F +M S + +  P
Sbjct: 72  IAALSSFASLEYARKVFDEIPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYP 131

Query: 138 NSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVF 197
           N      L+ A A++ +L  G  ++    K  +  D  +  +LI  Y  CG +D A +VF
Sbjct: 132 NKYTFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVF 191

Query: 198 HSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVE 257
            +  +KDV ++ S I G    G   +A ELF+ M+S+ +    ++ + VLSAC+ +  +E
Sbjct: 192 TTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLE 251

Query: 258 KGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
            G     S  + + +   L     M+D+  + G +E+A+    +M  K DNV W T+L  
Sbjct: 252 FG-RRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEK-DNVTWTTMLDG 309

Query: 318 CRVHRNAEMGQRIGNMLIESD 338
             +  + E  + + N + + D
Sbjct: 310 YAISEDYEAAREVLNAMPKKD 330


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 220/509 (43%), Positives = 319/509 (62%), Gaps = 3/509 (0%)

Query: 6   SFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLF 65
           SF +   +K          GR    + +       D+   N++I+ YV+ G +  G ++F
Sbjct: 139 SFTFTALLKACSAALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVF 198

Query: 66  DKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALA 125
           D+M  R+ +SW S++    + G+++ A  +F+ +P + +V+W  +++G+AQN RP+EAL 
Sbjct: 199 DEMLDRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALE 258

Query: 126 LFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDS--ILCAALIDM 183
           +F  MQ+  ++ +   LV ++SACAQLGA  Y NWV    ++      S  ++ +ALIDM
Sbjct: 259 VFERMQAAGVKTDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDM 318

Query: 184 YAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISY 243
           YAKCGS++ A +VF    +++V +Y+S I G AM+G +  A ELF+ M    I P+ +++
Sbjct: 319 YAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTF 378

Query: 244 IAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP 303
           I VL+ACSH G VE+G   F  M + HG+ P  DHYACMVDLLGRAG LEEA N +  MP
Sbjct: 379 IGVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMP 438

Query: 304 MKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEE 363
           M P   +WG LLGACR+H N +M Q   + L E + N  G YILLSNIY    + ++  +
Sbjct: 439 MNPHGGVWGALLGACRIHGNPDMAQIAASHLFELEPNGIGNYILLSNIYASAGRWDDVSK 498

Query: 364 VRKTMRKRKIKRAPGCSLIE-LDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNV 422
           VRK MR + +K+ PGCS +E   G++HEF AGD SH K++EI Q  E+++ ++K  GY  
Sbjct: 499 VRKLMRAKGLKKNPGCSWVEGKKGIIHEFFAGDMSHPKSREIKQALEDLLDRLKYLGYQP 558

Query: 423 ETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVS 482
              SV +DI +EEK+ ++  HSEKLALAFGL+ T  G  IRIVKN+RIC DCHS M   S
Sbjct: 559 NLSSVAYDISDEEKKRLLMSHSEKLALAFGLLTTNAGCTIRIVKNLRICEDCHSVMCGAS 618

Query: 483 KVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           ++  R+I +RD   +HHF DG CSC  +W
Sbjct: 619 QITGREIVVRDNMRFHHFRDGRCSCGNFW 647



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 108/242 (44%), Gaps = 35/242 (14%)

Query: 95  VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA 154
           VF Q+   +   W  LI G+A  G   E++ L+  M+   + P S    +LL AC+    
Sbjct: 95  VFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALD 154

Query: 155 LDYGNWVYS---------------------YIQKKCIKL-----------DSILCAALID 182
           ++ G  V++                     Y++  C+             D I   +LI 
Sbjct: 155 VNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIV 214

Query: 183 MYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSIS 242
            YAK G+++ A ++F     KD+ A+T+ + G A N    EA E+FE M++ G+  D ++
Sbjct: 215 AYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVT 274

Query: 243 YIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHY--ACMVDLLGRAGLLEEAENFIA 300
            + V+SAC+ LG   K   +   + +  G  P  +    + ++D+  + G +E+A     
Sbjct: 275 LVGVISACAQLG-AAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFE 333

Query: 301 SM 302
            M
Sbjct: 334 RM 335



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 99/238 (41%), Gaps = 15/238 (6%)

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ-----V 196
           LVS+L  C  +  +     V+++I +K ++    + A L+    K   +D+ M      V
Sbjct: 42  LVSVLHGCTHINQV---KQVHAHIFRKGLEQCCFVLAKLLRTLTK---LDVPMDPYPRLV 95

Query: 197 FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWV 256
           F      +   +T+ I G A+ G  +E+  L+ +M+ +GI P S ++ A+L ACS    V
Sbjct: 96  FQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDV 155

Query: 257 EKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLG 316
             G         + G   +L     ++D+  + G L         M +  D + W +L+ 
Sbjct: 156 NLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEM-LDRDVISWTSLIV 214

Query: 317 ACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIK 374
           A     N E    + + L   D      +  +   Y +  +   A EV + M+   +K
Sbjct: 215 AYAKVGNMEAASELFDGLPMKDMV---AWTAMVTGYAQNARPREALEVFERMQAAGVK 269


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 212/502 (42%), Positives = 323/502 (64%), Gaps = 1/502 (0%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DVF   +++  +   G + +A  +F+E  + + VSWN+MI GYV++ +I +  +LFD+MP
Sbjct: 276 DVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMP 335

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE 129
            RN  SWN+++ G  + G++D A  +F++MP+R  +SW  +ISG+AQ+G+ +EAL LF +
Sbjct: 336 SRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIK 395

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
           M+      N + L   LS+CA++ AL+ G  ++  + K   +   I   AL+ MY KCGS
Sbjct: 396 MKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGS 455

Query: 190 IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
           I+ A  VF    +KD+ ++ + I G A +G   EA  LFE+MK   I PD ++ + VLSA
Sbjct: 456 IEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKMT-IKPDDVTLVGVLSA 514

Query: 250 CSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNV 309
           CSH G V+KG  YF+SM+  +GI     HY CM+DLLGRAG L+EA N + SMP  PD  
Sbjct: 515 CSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAA 574

Query: 310 IWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMR 369
            WG LLGA R+H + E+G++    + E + ++ G Y+LLSN+Y  + +     E+R  MR
Sbjct: 575 TWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMR 634

Query: 370 KRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMF 429
            + +K+ PG S +E+    H F  GD SH + + IY + EE+  ++K  G+   T+ V+ 
Sbjct: 635 DKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLEELDLELKKDGFVSSTKLVLH 694

Query: 430 DIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKI 489
           D+EEEEKE ++ YHSEKLA+AFG++   PG  IR++KN+R+C DCH+A+K +SK+ +R+I
Sbjct: 695 DVEEEEKEHMLKYHSEKLAVAFGILSIPPGRPIRVIKNLRVCEDCHNAIKHISKITQRQI 754

Query: 490 SIRDRKHYHHFEDGSCSCLEYW 511
            +RD   +HHF +GSCSC +YW
Sbjct: 755 IVRDSNRFHHFSEGSCSCGDYW 776



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/321 (28%), Positives = 159/321 (49%), Gaps = 15/321 (4%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           M+VKN  ++     N L+  Y   GR+ DAR +FD   D ++VSWN ++ GYVR   + +
Sbjct: 179 MLVKNEISW-----NGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDD 233

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
              LFD+MP R+ +SWN ++ G  + G + +A R+F ++P R + +W  ++SGF QNG  
Sbjct: 234 ARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGML 293

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
            EA  +F EM     E N     ++++   Q   ++    ++  +  +    ++     +
Sbjct: 294 DEATRIFEEMP----EKNEVSWNAMIAGYVQSQQIEKARELFDQMPSR----NTSSWNTM 345

Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           +  YA+CG+ID A  +F     +D  ++ + I G A +G S EA  LF  MK  G   + 
Sbjct: 346 VTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNR 405

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
            +    LS+C+ +  +E G    H      G +        ++ + G+ G +EEA +   
Sbjct: 406 SALACALSSCAEIAALELG-KQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFE 464

Query: 301 SMPMKPDNVIWGTLLGACRVH 321
            +  K D V W T++     H
Sbjct: 465 DITEK-DIVSWNTMIAGYARH 484



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 153/304 (50%), Gaps = 24/304 (7%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDV 74
           N++I  Y    +   AR VF++  D D++SWN M++GYV+NG +     LF++MP+++ V
Sbjct: 95  NAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVV 154

Query: 75  SWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD 134
           SWN++L G  + G V++A ++F+QM  ++ +SW  L+S + QNGR ++A  LF     +D
Sbjct: 155 SWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFD--SKMD 212

Query: 135 LEPNSAILVS---LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSID 191
            E     +VS   L+    +   LD    ++  +  +    D I    +I  YA+ G + 
Sbjct: 213 WE-----IVSWNCLMGGYVRKKRLDDARSLFDRMPVR----DKISWNIMITGYAQNGLLS 263

Query: 192 LAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS 251
            A ++F     +DV A+T+ + G   NG   EA  +FE M  K    + +S+ A+++   
Sbjct: 264 EARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEK----NEVSWNAMIAGYV 319

Query: 252 HLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIW 311
               +EK    F  M            +  MV    + G +++A+     MP + D + W
Sbjct: 320 QSQQIEKARELFDQM-----PSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQR-DCISW 373

Query: 312 GTLL 315
             ++
Sbjct: 374 AAMI 377



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 136/281 (48%), Gaps = 22/281 (7%)

Query: 39  DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQ 98
           D D+V WN  I+ Y+R G+    L +F+ M +R+ V++N+++ G +     D A +VF +
Sbjct: 57  DSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEK 116

Query: 99  MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
           MP R L+SW V++SG+ +NG    A ALF +M   D+   +A    +LS  AQ G ++  
Sbjct: 117 MPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNA----MLSGFAQNGFVEEA 172

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
             ++  +  K    + I    L+  Y + G I+ A ++F S  D ++ ++   + G    
Sbjct: 173 RKIFDQMLVK----NEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRK 228

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDH 278
               +A  LF+ M  +    D IS+  +++  +  G + +    F  +       P  D 
Sbjct: 229 KRLDDARSLFDRMPVR----DKISWNIMITGYAQNGLLSEARRLFEEL-------PIRDV 277

Query: 279 YA--CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
           +A   MV    + G+L+EA      MP K + V W  ++  
Sbjct: 278 FAWTAMVSGFVQNGMLDEATRIFEEMPEK-NEVSWNAMIAG 317



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 80/165 (48%), Gaps = 11/165 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +VK  F       N+L+  Y  CG + +A  VF++  + D+VSWN+MI GY R+G   E 
Sbjct: 431 LVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEA 490

Query: 62  LKLFDKMP---QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLISG 113
           L LF+ M    + +DV+   +L      G VD     FN M +   ++     +  +I  
Sbjct: 491 LALFESMKMTIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDL 550

Query: 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
             + GR  EAL L   M+S+   P++A   +LL A    G  + G
Sbjct: 551 LGRAGRLDEALNL---MKSMPFYPDAATWGALLGASRIHGDTELG 592


>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 643

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 218/503 (43%), Positives = 329/503 (65%), Gaps = 2/503 (0%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ 70
           +FV  +L+  YS CG V  A+ VF+E  + +VV+WN+++    R G++     +F++MP 
Sbjct: 141 LFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACFRCGDVKGADMMFNRMPF 200

Query: 71  RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM 130
           RN  SWN +L G  + G ++ A ++F +MP +  VSW  +I GFA NG   EA   FRE+
Sbjct: 201 RNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGFFREL 260

Query: 131 QSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSI 190
           Q + + PN   L   LSACA  GA+++G  ++ +I+K        +  AL+D Y+KCG++
Sbjct: 261 QQVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGFLWMVSVNNALLDTYSKCGNV 320

Query: 191 DLAMQVFHSYGDK-DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
            +A  VF    +K  + ++TS I GLAM+G+  EA +LF  M+  GI PD I++I++L A
Sbjct: 321 GMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISILYA 380

Query: 250 CSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNV 309
           CSH G +EKG+ YF+ M D++ I+P ++HY CMVDL GRAG L++A  FI  MP+ P  +
Sbjct: 381 CSHAGLIEKGYEYFYKMKDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIHMPVLPTAI 440

Query: 310 IWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMR 369
           IW TLLGAC +H N ++ +R+   L E D N+ G ++LLSNIY    K ++   VR++M 
Sbjct: 441 IWRTLLGACSIHGNVKLAERVKERLSELDPNNSGDHVLLSNIYAVAGKWKDVAAVRRSMT 500

Query: 370 KRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYG-YNVETRSVM 428
            +++ + PG S+IE+D +++ F+AG+  +  T+E Y+  +EI+ K++  G Y  E  SV+
Sbjct: 501 DQRMNKTPGWSMIEVDKIMYSFVAGEVQNSITEEAYEKLKEIMLKLRVEGCYIPEVGSVL 560

Query: 429 FDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRK 488
            DIE+EEKE  +  HSEKLA+AFG+     GS+IRIVKN+R+C DCH+ MKL+SKV+  +
Sbjct: 561 HDIEDEEKEDSVSRHSEKLAVAFGIARLCKGSIIRIVKNLRVCRDCHTVMKLISKVYGLE 620

Query: 489 ISIRDRKHYHHFEDGSCSCLEYW 511
           I +RDR  +H F+ GSCSC +YW
Sbjct: 621 IVVRDRSRFHSFKTGSCSCRDYW 643



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 94/231 (40%), Gaps = 46/231 (19%)

Query: 88  SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEP-NSAILVSLL 146
           ++D A R+F   P   +     LI G A++  P+ +L  F EM+     P +S     LL
Sbjct: 54  ALDYARRLFLHFPNPDVFMHNTLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLL 113

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
            A A   +L+ G  ++       +     +   L+ MY++CG +  A +VF         
Sbjct: 114 KAAASYRSLESGIQLHCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFE-------- 165

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
                              E+FE        P+ +++ AV++AC   G V+     F+ M
Sbjct: 166 -------------------EMFE--------PNVVAWNAVVTACFRCGDVKGADMMFNRM 198

Query: 267 FDVHGIKP--ELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
                  P   L  +  M+    +AG LE A      MP+K D+V W T++
Sbjct: 199 -------PFRNLTSWNVMLAGYTKAGELELARKLFLEMPVK-DDVSWSTMI 241


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 229/536 (42%), Positives = 330/536 (61%), Gaps = 43/536 (8%)

Query: 17  LIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM------PQ 70
           +    S C  +  A  +F +  + ++ +WN+MI GY  +   +  L+L+ +M      P 
Sbjct: 80  IFTLLSFCSPMSYAHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPD 139

Query: 71  RNDVSW---------------------------------NSILGGLVRFGSVDDACRVFN 97
            +   +                                 N+++      G  + A ++F 
Sbjct: 140 THTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFE 199

Query: 98  QMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDY 157
            M +R+LV+W  +I+G+A NGRP EAL LFREM    +EP+   +VSLLSACA+LGAL  
Sbjct: 200 LMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALAL 259

Query: 158 GNWVYSYIQKKCIKLDSILCA--ALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGL 215
           G   + Y+ K  + LD  L A  AL+D+YAKCGSI  A +VF    +K V ++TS I GL
Sbjct: 260 GRRAHVYMVK--VGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGL 317

Query: 216 AMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE 275
           A+NG   EA ELF+ ++ KG+ P  I+++ VL ACSH G V++GF YF  M + +GI P+
Sbjct: 318 AVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPK 377

Query: 276 LDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLI 335
           ++HY CMVDLLGRAGL+++A  FI +MPM+P+ V+W TLLGAC +H +  +G+     L+
Sbjct: 378 IEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLL 437

Query: 336 ESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGD 395
           + +  H G Y+LLSN+Y    +  +  +VR+TM +  +K+ PG SL+EL   +HEF+ GD
Sbjct: 438 QLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGD 497

Query: 396 RSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLIC 455
           RSH +T+EIY    EI K +K  GY     +V+ DIEEEEKET + YHSEK+A+AF LI 
Sbjct: 498 RSHPQTEEIYVKLAEITKLLKLEGYVPHISNVLADIEEEEKETALSYHSEKIAIAFMLIN 557

Query: 456 TKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           T  G  IR+VKN+R+C+DCH A+KL+SKVF R+I +RDR  +HHF+DG CSC +YW
Sbjct: 558 TAAGIPIRVVKNLRVCADCHLAIKLISKVFDREIVVRDRSRFHHFKDGHCSCKDYW 613



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 114/237 (48%), Gaps = 44/237 (18%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + ++N F   VFV+N+L+  Y+ CG    A  +F+   + ++V+WNS+INGY  NG   E
Sbjct: 165 IAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNE 224

Query: 61  GLKLFDKMPQR---------------------------------------NDVSWNSILG 81
            L LF +M  R                                       N  + N++L 
Sbjct: 225 ALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLD 284

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + GS+  A +VF++M ++S+VSW  LI G A NG  KEAL LF+E++   L P+   
Sbjct: 285 LYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEIT 344

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKK---CIKLDSILCAALIDMYAKCGSIDLAMQ 195
            V +L AC+  G +D G   +  ++++     K++   C  ++D+  + G +  A +
Sbjct: 345 FVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGC--MVDLLGRAGLVKQAHE 399


>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 650

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 229/521 (43%), Positives = 328/521 (62%), Gaps = 16/521 (3%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGY--VRNGEILE 60
           VK+ F  ++FV+ + I  +S+CG V  A  VFD  D  +VV+WN M++GY  V+  +I +
Sbjct: 134 VKHGFDSNLFVQKAFIHMFSLCGIVDLAHKVFDMGDACEVVTWNIMLSGYNRVKQFKISK 193

Query: 61  GLKLFDKMPQRNDVSWNS-----ILGGLVRF-----GSVDDACRVFNQMPKRSLVSWVVL 110
            L +     +  D+ W       I GG+V       G +D+A  VF+ M  R +VSW  +
Sbjct: 194 MLLVLSACSKLKDLEWGKHIFKYINGGIVEHMFAACGEMDEAQGVFDNMKTRDVVSWTAM 253

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCI 170
           I G+ +      ALALFREMQ  +++P+   +VS+L ACA LGAL+ G WV + I K   
Sbjct: 254 IDGYLRMNHFIGALALFREMQMSNVKPDEFTMVSILIACALLGALELGEWVKTCIDKNSN 313

Query: 171 KLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFEN 230
           K DS +  AL+DMY KCG++  A +VF     KD   +T+ I GLA+NGH  EA  +F N
Sbjct: 314 KNDSFVGNALVDMYFKCGNVRKAKKVFKEMYQKDKFTWTTMIVGLAINGHGEEALAMFSN 373

Query: 231 MKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAG 290
           M    ++PD I+YI VL AC     V+KG  +F +M   HGIKP + HY CMVDLLG  G
Sbjct: 374 MIEASVTPDEITYIGVLCAC----MVDKGKSFFTNMTMQHGIKPTVTHYGCMVDLLGCVG 429

Query: 291 LLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSN 350
            LEEA   I +MP+KP++++WG+ LGACRVH+N ++       ++E +  +   Y+LL N
Sbjct: 430 CLEEALEVIVNMPVKPNSIVWGSPLGACRVHKNVQLADMAAKQILELEPENGAVYVLLCN 489

Query: 351 IYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEE 410
           IY  + K EN  +VRK M +R IK+ PGCSL+EL+G V+EF+AGD+SH +++EIY   E 
Sbjct: 490 IYAASKKWENLCQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIYAKLEN 549

Query: 411 IVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRI 470
           +++ +   GY+ +T  V  D+ EE+KET +  HSEKLA+A+ LI + PG  IRIVKN+R+
Sbjct: 550 MMQGLIKAGYSPDTSEVFLDLGEEDKETALYRHSEKLAIAYALISSGPGVTIRIVKNLRM 609

Query: 471 CSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           C DCH   KLVS+ + R++ ++D+  +HHF  GSCSC  +W
Sbjct: 610 CVDCHHMAKLVSQAYNRELIVKDKTRFHHFRHGSCSCNNFW 650



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 70/314 (22%), Positives = 133/314 (42%), Gaps = 51/314 (16%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           G+++ A +VF+ +P  S+  W  +I G+++   P+  ++++  M + +++P+       L
Sbjct: 55  GNMNYAHQVFDTIPHPSMFIWNTMIKGYSKISHPENGVSMYLLMLTSNIKPDRFTFPFSL 114

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
               +  AL +G  + ++  K     +  +  A I M++ CG +DLA +VF   GD    
Sbjct: 115 KGFTRDMALQHGKELLNHAVKHGFDSNLFVQKAFIHMFSLCGIVDLAHKVF-DMGD---- 169

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF--- 263
           A     + + ++G        +  +K   IS      + VLSACS L  +E G + F   
Sbjct: 170 ACEVVTWNIMLSG--------YNRVKQFKIS----KMLLVLSACSKLKDLEWGKHIFKYI 217

Query: 264 -----HSMF-------------------DVHGIKPELDHYACMVDLLGRAGLLEEAENFI 299
                  MF                   DV      +D Y  M   +G   L  E +   
Sbjct: 218 NGGIVEHMFAACGEMDEAQGVFDNMKTRDVVSWTAMIDGYLRMNHFIGALALFREMQ--- 274

Query: 300 ASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYI--LLSNIYVETLK 357
               +KPD     ++L AC +    E+G+ +    I+ + N +  ++   L ++Y +   
Sbjct: 275 -MSNVKPDEFTMVSILIACALLGALELGEWV-KTCIDKNSNKNDSFVGNALVDMYFKCGN 332

Query: 358 GENAEEVRKTMRKR 371
              A++V K M ++
Sbjct: 333 VRKAKKVFKEMYQK 346


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 213/479 (44%), Positives = 319/479 (66%), Gaps = 4/479 (0%)

Query: 37  SDDLDVVSWNSMINGYVRNGEILEGLKLFDKM-PQRNDVSWNSILGGLVRFGSVDDACRV 95
           S D +++  +++++ Y + G I    ++F  M   ++  +W+S++ G  R G ++ A ++
Sbjct: 244 SIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKL 303

Query: 96  FNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGAL 155
           FN M +R ++SW  +ISG++Q G+  EAL LF+EM++L ++P+   LV++LSACA+LGA 
Sbjct: 304 FNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAF 363

Query: 156 DYGNWVY-SYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD--KDVSAYTSAI 212
           D G  +Y  YI+      ++IL AA++DMYAKCGSID A+++F   G   K    + S I
Sbjct: 364 DLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMI 423

Query: 213 FGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGI 272
            GLA +G    A  +F  + S G+ PD ++++ VL AC H G +E+G   F SMF+ +GI
Sbjct: 424 AGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGI 483

Query: 273 KPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGN 332
           KP+++HY CMVDLLGR G LEEA + +  MP + ++VIW  LL ACR H N ++G+  G 
Sbjct: 484 KPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQ 543

Query: 333 MLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFL 392
            L+E +  H  RY+LLSNI  +  + E A +VRK M    I++ PG S IEL G +H F+
Sbjct: 544 KLLEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIELGGAIHRFV 603

Query: 393 AGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFG 452
           A D+SH + +EI    +++  ++K+ GY   T  VMFDI+EEEKE+V+ YHSEKLALAFG
Sbjct: 604 ASDKSHPQGKEIELMLKDMAMRLKSAGYVPNTAQVMFDIDEEEKESVVSYHSEKLALAFG 663

Query: 453 LICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           L+   P   IRIVKN+RIC+DCH A KLVS+++ R+I++RD   +HHF +GSCSC+++W
Sbjct: 664 LMYCSPTDTIRIVKNLRICADCHKAFKLVSEIYGREITVRDTMRFHHFRNGSCSCMDFW 722



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/371 (25%), Positives = 170/371 (45%), Gaps = 77/371 (20%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGR---VRDARWVFDESDDLDVVSWNSMINGYVRNGEI 58
            + N   + +F  + LI F+S+ G    +  +R +F + D  ++  WN+MI GY R+   
Sbjct: 32  TIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQIDCPNLFMWNTMIRGYSRSDNP 91

Query: 59  LEGLKLFDKMPQR-----NDVSWNSILGGLVR---------------------------- 85
            E + L+  M  +     N+ ++  +L    R                            
Sbjct: 92  REAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNA 151

Query: 86  -------FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPN 138
                  FG+++ A  +F++   R LVS+  +I G+A+  +P+ AL LF EMQ+  + P+
Sbjct: 152 LIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPD 211

Query: 139 SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDS--ILCAALIDMYAKCGSIDLAMQV 196
               V+L S C+ L   + G  +++ + K    +DS  +L +A++DMYAKCG I++A +V
Sbjct: 212 EFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERV 271

Query: 197 FHSYG--------------------------------DKDVSAYTSAIFGLAMNGHSIEA 224
           F + G                                ++DV ++T+ I G +  G   EA
Sbjct: 272 FSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEA 331

Query: 225 FELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVD 284
            ELF+ M++ GI PD ++ +AVLSAC+ LG  + G   +H   +           A ++D
Sbjct: 332 LELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMD 391

Query: 285 LLGRAGLLEEA 295
           +  + G ++ A
Sbjct: 392 MYAKCGSIDSA 402



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 138/269 (51%), Gaps = 9/269 (3%)

Query: 74  VSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL 133
           +S+ S+LG       +D +  +F+Q+   +L  W  +I G++++  P+EA+ L+  M + 
Sbjct: 48  ISFFSLLGSK---DGLDHSRLLFSQIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAK 104

Query: 134 DL-EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDL 192
            +  PN+     LL++CA+L +L+ G+ V+S+I K   + D  +  ALI +Y+  G+++L
Sbjct: 105 GIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNL 164

Query: 193 AMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSH 252
           A  +F     +D+ +Y + I G A       A  LF  M++ GI PD  +++A+ S CS 
Sbjct: 165 ARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSV 224

Query: 253 LGWVEKGFYYFHSMF-DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIW 311
           L     G      ++ ++  I   +   + +VD+  + GL+  AE   ++M        W
Sbjct: 225 LNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAW 284

Query: 312 GTLLGACRVHRNAEM--GQRIGNMLIESD 338
            +++  C   R  E+   +++ N + E D
Sbjct: 285 SSMV--CGYARCGEINVARKLFNHMHERD 311


>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
 gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 205/466 (43%), Positives = 315/466 (67%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N ++N Y   GE+ + + LF+KMPQR+ V+WN ++  L + G +D A   F +MP +++ 
Sbjct: 49  NMILNLYGLCGEMGDAMLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVR 108

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           SW  +ISGF Q G+P EA+ LF +++   + PN   +VS+L+ACA LG LD G  V+ Y 
Sbjct: 109 SWTSMISGFVQCGKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYS 168

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
            K   K +  +C  LIDMY KCG ++ A +VF+   ++ V ++++ I GLAM+G + EA 
Sbjct: 169 TKSGFKRNVHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEAL 228

Query: 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL 285
            LF  M   G+ P+ +++I +L ACSH+G +++G  +F SM   +G+ P+++HY C+VDL
Sbjct: 229 CLFSEMIKLGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDL 288

Query: 286 LGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRY 345
             RAGLLEEA  FI SMP+KP+ V+WG LLG C+VH+N ++ +     L E D  +DG Y
Sbjct: 289 FSRAGLLEEAHEFILSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELDPLNDGYY 348

Query: 346 ILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIY 405
           +++SNIY E  + E+A  VRK M+ R +K+  G S I ++GVVHEF+AGD++H + ++I 
Sbjct: 349 VVISNIYAEAERWEDAARVRKLMKDRGVKKTSGWSSITVNGVVHEFVAGDQTHPQAEDIC 408

Query: 406 QFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIV 465
           + W++++ K+K  GY  +T  V+ D+EE+EKE  +  HSEKLA+ FGL+ T  G+ IRI+
Sbjct: 409 KIWDKLLVKMKRRGYAPKTSVVLLDMEEKEKEKFLYRHSEKLAVVFGLMTTPEGTPIRIM 468

Query: 466 KNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           KN+R+C DCH+A+K++S +  R+I +RDR  +H F DG CSC ++W
Sbjct: 469 KNLRVCEDCHAALKIISGIVSREIIVRDRNRFHCFRDGQCSCRDFW 514



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 96/227 (42%), Gaps = 33/227 (14%)

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
           M+  D+ P++     +L AC +L  +  G  ++   QK     +  L   ++++Y  CG 
Sbjct: 1   MRLFDVLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGE 60

Query: 190 IDLAMQVFH-------------------------SYG------DKDVSAYTSAIFGLAMN 218
           +  AM +F                          +YG      +K+V ++TS I G    
Sbjct: 61  MGDAMLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQC 120

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDH 278
           G   EA +LF  ++ + + P+ ++ ++VL+AC+ LG ++ G    H      G K  +  
Sbjct: 121 GKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLG-RIVHEYSTKSGFKRNVHV 179

Query: 279 YACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAE 325
              ++D+  + G LE A      M  +   V W  ++    +H  AE
Sbjct: 180 CNTLIDMYVKCGCLENARRVFYEMEERT-VVSWSAMIAGLAMHGQAE 225


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 238/550 (43%), Positives = 333/550 (60%), Gaps = 39/550 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +VVK     D FVK SLI  Y+ CG + +A  VFD+  D +  SW + I+GYV  G+  E
Sbjct: 133 LVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCRE 192

Query: 61  GLKLFDK---MPQRND--------------------------VSWNSIL------GGLVR 85
            + +F +   M  R D                          ++ N ++        LV 
Sbjct: 193 AIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVD 252

Query: 86  F----GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
           F    G+++ A  VF+ M ++++VSW  +I G+A NG PKEAL LF +M +  L+P+   
Sbjct: 253 FYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYA 312

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           +V +L +CA+LGAL+ G+W  + I       +S+L  ALIDMYAKCG +D A +VF    
Sbjct: 313 MVGVLCSCARLGALELGDWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMR 372

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
            KD   + +AI GLAM+GH  +A  LF  M+  GI PD  +++ +L AC+H G VE+G  
Sbjct: 373 KKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGRR 432

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           YF+SM  V  + PE++HY CMVDLLGRAG L+EA   I SMPM+ + ++WG LLG CR+H
Sbjct: 433 YFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGGCRLH 492

Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
           R+ ++ + +   LI  +  H G Y+LLSNIY  + K E A ++R  M +R +K+ PG S 
Sbjct: 493 RDTQLVEVVLKKLIALEPWHSGNYVLLSNIYAASHKWEEAAKIRSIMSERGVKKIPGYSW 552

Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIG 441
           IE+DGVVH+FL GD SH  +++IY    E+ K +K  GY   T  V+FDIEEEEKE  IG
Sbjct: 553 IEVDGVVHQFLVGDTSHPLSEKIYAKLGELAKDLKAAGYVPTTDHVLFDIEEEEKEHFIG 612

Query: 442 YHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
            HSEKLA+AFGLI T P   I +VKN+R+C DCH A+K +S++  R+I +RD   +H F 
Sbjct: 613 CHSEKLAVAFGLISTAPNDKILVVKNLRVCGDCHEAIKHISRIAGREIIVRDNNRFHCFT 672

Query: 502 DGSCSCLEYW 511
           DG CSC +YW
Sbjct: 673 DGLCSCKDYW 682



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 121/239 (50%), Gaps = 2/239 (0%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136
           N +L     FG+ + + R+ +Q  + ++  +  +I G   N   +E++ ++  M+   L 
Sbjct: 46  NKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMIRGLVLNDCFQESIEIYHSMRKEGLS 105

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
           P+S     +L ACA++   + G  ++S + K   + D+ +  +LI++Y KCG ID A +V
Sbjct: 106 PDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKV 165

Query: 197 FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWV 256
           F    DK+ +++T+ I G    G   EA ++F  +   G+ PDS S + VLSAC   G +
Sbjct: 166 FDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDL 225

Query: 257 EKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
             G  +       +G+   +     +VD  G+ G +E A +    M ++ + V W +++
Sbjct: 226 RSG-EWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSVFDGM-LEKNIVSWSSMI 282



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 45/210 (21%), Positives = 94/210 (44%), Gaps = 14/210 (6%)

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
           M SL +  ++ I   L+   + L  L +   +++ + +  +  D+ L   ++      G+
Sbjct: 1   MSSLIVTKSAGIKNRLIQGFSCLKHLKH---IHAALLRLGLDEDTYLLNKVLRFSFNFGN 57

Query: 190 IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
            + + ++     + ++  + + I GL +N    E+ E++ +M+ +G+SPDS ++  VL A
Sbjct: 58  TNYSFRILDQTKEPNIFLFNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKA 117

Query: 250 CSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNV 309
           C+ +   E G    HS+    G + +      +++L  + G ++ A      +P K    
Sbjct: 118 CARVLDSELGV-KMHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFAS 176

Query: 310 IWGTL-----LGACR-----VHRNAEMGQR 329
              T+     +G CR       R  EMG R
Sbjct: 177 WTATISGYVGVGKCREAIDMFRRLLEMGLR 206


>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 638

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/511 (44%), Positives = 313/511 (61%), Gaps = 32/511 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDE-SDDLDVVSWNSMINGYVRNGEILE 60
           V+K  F  DVFV+N+LI  Y  C RV  A+ VFDE     DVVSWNSMI G+VR G+I  
Sbjct: 159 VIKLGFVKDVFVRNALIHLYCTCCRVESAKQVFDEVPSSRDVVSWNSMIVGFVRLGQISV 218

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
             KLF +MP+++ +SW +I+ G V                               QNG  
Sbjct: 219 AQKLFVEMPEKDVISWGTIISGCV-------------------------------QNGEL 247

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
           ++AL  F+E+    L PN AILVSLL+A AQLG L+YG  ++S        + + L  AL
Sbjct: 248 EKALDYFKELGEQKLRPNEAILVSLLAAAAQLGTLEYGKRIHSIANSLRFPMTASLGTAL 307

Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           +DMYAKCG ID +  +F    +KD  ++   I GLA +G   EA  LFE   ++G  P +
Sbjct: 308 VDMYAKCGCIDESRFLFDRMPEKDKWSWNVMICGLATHGLGQEALALFEKFLTQGFHPVN 367

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
           +++I VL+ACS  G V +G ++F  M D +GI+PE++HY CMVDLL RAG + +A   I 
Sbjct: 368 VTFIGVLTACSRAGLVSEGKHFFKLMTDTYGIEPEMEHYGCMVDLLSRAGFVYDAVEMIN 427

Query: 301 SMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGEN 360
            MP  PD V+W ++LG+C+VH   E+G+ IGN LI+ D  H+G Y+ L+ I+    K E+
Sbjct: 428 RMPAPPDPVLWASVLGSCQVHGFIELGEEIGNKLIQMDPTHNGHYVQLARIFARLRKWED 487

Query: 361 AEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGY 420
             +VR+ M +R   +  G SLIE +G VH F+AGD+ HE+T EIY+  E +  +I   GY
Sbjct: 488 VSKVRRLMAERNSNKIAGWSLIEAEGRVHRFVAGDKEHERTTEIYKMLEIMGVRIAAAGY 547

Query: 421 NVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKL 480
           +    SV+ DIEEEEKE  I  HSE+LA+AFGL+ TK G  IRI+KN+R+C DCH   K+
Sbjct: 548 SANVSSVLHDIEEEEKENAIKEHSERLAIAFGLLVTKDGDCIRIIKNLRVCGDCHEVSKI 607

Query: 481 VSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           +S VF+R+I +RD   +HHF+ G CSC +YW
Sbjct: 608 ISLVFEREIIVRDGSRFHHFKKGICSCQDYW 638



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 96/209 (45%), Gaps = 10/209 (4%)

Query: 90  DDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM-QSLDLEPNSAILVSLLSA 148
           D A  ++N +   ++ +   +I  F +   P+ +++L+  M +S    PN   L  +L A
Sbjct: 83  DYALSIYNSISHPTVFATNNMIRCFVKGDLPRHSISLYSHMCRSFVAAPNKHTLTFVLQA 142

Query: 149 CAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY-GDKDVSA 207
           C+   A+  G  V +++ K     D  +  ALI +Y  C  ++ A QVF      +DV +
Sbjct: 143 CSNAFAIREGAQVQTHVIKLGFVKDVFVRNALIHLYCTCCRVESAKQVFDEVPSSRDVVS 202

Query: 208 YTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMF 267
           + S I G    G    A +LF  M  K    D IS+  ++S C   G +EK   YF  + 
Sbjct: 203 WNSMIVGFVRLGQISVAQKLFVEMPEK----DVISWGTIISGCVQNGELEKALDYFKELG 258

Query: 268 DVHGIKPELDHYACMVDLLGRAGLLEEAE 296
           +   ++P   + A +V LL  A  L   E
Sbjct: 259 E-QKLRP---NEAILVSLLAAAAQLGTLE 283


>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 595

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 215/474 (45%), Positives = 313/474 (66%), Gaps = 3/474 (0%)

Query: 41  DVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMP 100
           DV + N++++ Y   GEI    +LFD +P+R+ VSWN ++ G ++ G V  A  VF  MP
Sbjct: 122 DVFALNALLHVYALCGEIHCARQLFDNIPERDAVSWNIMIDGYIKSGDVKTAYGVFLDMP 181

Query: 101 KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNW 160
            +++VSW  LISG  + G+  EAL+L  EMQ+   E +   + SLL+ACA LGALD G W
Sbjct: 182 LKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGFELDGVAIASLLTACANLGALDQGRW 241

Query: 161 VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY--GDKDVSAYTSAIFGLAMN 218
           ++ Y+    + +D ++  AL++MY KCG ++ A+ VF       KDV  +T+ I G A++
Sbjct: 242 LHFYVLNNGVDVDRVIGCALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTAMIDGFAIH 301

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDH 278
           G  +EA E F  M+ +GI P+SI++ AVL ACS+ G VE+G   F SM   + + P ++H
Sbjct: 302 GRGVEALEWFNRMRREGIRPNSITFTAVLRACSYGGLVEEGKELFKSMKCFYNVNPSIEH 361

Query: 279 YACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338
           Y CMVDLLGR+G L+EA+  I  MPMKP  VIWG LL AC +HR+  +G ++G  L+E D
Sbjct: 362 YGCMVDLLGRSGRLDEAKELIKKMPMKPSAVIWGALLKACWIHRDFLLGSQVGAHLVEVD 421

Query: 339 QNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSH 398
            +H GRYI L+ I     K + A EVR  M+   +  +PG S + L+G+VHEFLAG + H
Sbjct: 422 SDHSGRYIQLATILAAEGKWKEAAEVRLKMKSLGVPISPGKSSVTLNGIVHEFLAGHQDH 481

Query: 399 EKTQEIYQFWEEIVKKIK-NYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTK 457
            + ++I    ++I ++++ + GY   T+ ++ D+E EEKET +  HSEKLA+AFGLI TK
Sbjct: 482 PQMEQIQLKLKQIAERLRQDEGYEPATKDLLLDLENEEKETAMAQHSEKLAIAFGLINTK 541

Query: 458 PGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           PG+ IR++KN+RIC DCH+  KLVS+++ R+I +RDR  +HHF DGSCSC +YW
Sbjct: 542 PGTTIRVIKNLRICRDCHTVAKLVSQIYSREIIMRDRVRFHHFRDGSCSCKDYW 595



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 116/267 (43%), Gaps = 43/267 (16%)

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           A RVFN +   +   W  +I  ++ +  P+ A   +++M S  +  NS     LL AC  
Sbjct: 41  AQRVFNGITSPNTFMWNAIIRAYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLLRACRN 100

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD------- 204
           L A+     V+  + K     D     AL+ +YA CG I  A Q+F +  ++D       
Sbjct: 101 LLAMGEALQVHGLVIKLGFGSDVFALNALLHVYALCGEIHCARQLFDNIPERDAVSWNIM 160

Query: 205 ------------------------VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
                                   V ++TS I GL   G S+EA  L   M++ G   D 
Sbjct: 161 IDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGFELDG 220

Query: 241 ISYIAVLSACSHLGWVEKG----FYYFHSMFDVHGIKPELDHYAC-MVDLLGRAGLLEEA 295
           ++  ++L+AC++LG +++G    FY  ++  DV  +        C +V++  + G +EEA
Sbjct: 221 VAIASLLTACANLGALDQGRWLHFYVLNNGVDVDRV------IGCALVNMYVKCGDMEEA 274

Query: 296 ENFIASMPMKPDNV-IWGTLLGACRVH 321
            +    +     +V IW  ++    +H
Sbjct: 275 LSVFGKLKGNQKDVYIWTAMIDGFAIH 301


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 235/552 (42%), Positives = 330/552 (59%), Gaps = 42/552 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V   S   DV    +LI  Y+  G VR AR VFD   + DVVSWN+MI GYV N    E 
Sbjct: 140 VFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEA 199

Query: 62  LKLFDKMPQRN----DVSWNSILGGLVRFGS----------VDD---------------- 91
           L+LF +M + N    + +  S+L    + GS          VDD                
Sbjct: 200 LELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIG 259

Query: 92  ----------ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
                     A  +F  +  + +VSW  LI G+      KEAL LF+EM      PN   
Sbjct: 260 LYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVT 319

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQK--KCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
           ++S+L ACA LGA+D G W++ YI K  K +   S L  +LIDMYAKCG I+ A QVF+S
Sbjct: 320 MLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNS 379

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
              K +S++ + IFG AM+G +  AF+LF  M+  GI PD I+ + +LSACSH G ++ G
Sbjct: 380 MMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLG 439

Query: 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACR 319
            + F S+   + I P+L+HY CM+DLLG AGL +EAE  I  MPM+PD VIW +LL AC+
Sbjct: 440 RHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKACK 499

Query: 320 VHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGC 379
           +H N E+ +     L+E +  + G Y+LLSNIY    + E+   +R+ +  + +K+ PGC
Sbjct: 500 MHGNLELAESFAQKLMEIEPENSGSYVLLSNIYATAGRWEDVARIREVLNGKGMKKVPGC 559

Query: 380 SLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETV 439
           S IE+D VVHEF+ GD+ H +++EIY+  EE+   ++  G+  +T  V+ ++EEE KE  
Sbjct: 560 SSIEIDSVVHEFIIGDKLHPQSREIYRMLEEMDVLLEEAGFVPDTSEVLQEMEEEWKEGA 619

Query: 440 IGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHH 499
           + +HSEKLA+AFGLI TKPG+ + +VKN+R+C +CH A KL+SK++KR+I  RDR  +HH
Sbjct: 620 LRHHSEKLAIAFGLISTKPGTKLTVVKNLRVCRNCHEATKLISKIYKREIVARDRTRFHH 679

Query: 500 FEDGSCSCLEYW 511
           F DG CSC +YW
Sbjct: 680 FRDGVCSCCDYW 691



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 90/289 (31%), Positives = 154/289 (53%), Gaps = 5/289 (1%)

Query: 39  DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQ 98
           +LD  +  S+I+ Y RNG + +  K+FD   QR+ VS  +++ G    G V  A +VF+ 
Sbjct: 115 ELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDX 174

Query: 99  MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
           + +R +VSW  +I+G+ +N   +EAL LF+EM   ++ P+   LVS+LSACAQ G+++ G
Sbjct: 175 ITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELG 234

Query: 159 NWVYSYIQKKCIKLDSI-LCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAM 217
             +++ +        S+ +  A I +Y+KCG +++A  +F     KDV ++ + I G   
Sbjct: 235 REIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTH 294

Query: 218 NGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD--VHGIKPE 275
                EA  LF+ M   G SP+ ++ ++VL AC+HLG ++ G  + H   D  + G+   
Sbjct: 295 MNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIG-RWIHVYIDKRLKGVTNG 353

Query: 276 LDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
                 ++D+  + G +E A     SM M      W  ++    +H  A
Sbjct: 354 SALRTSLIDMYAKCGDIEAAHQVFNSM-MHKSLSSWNAMIFGFAMHGRA 401



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 107/263 (40%), Gaps = 32/263 (12%)

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
           F  +  A  VF    + +L+ W  ++ G A +      L ++  M S    PN+     L
Sbjct: 30  FDGLPYAVSVFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFL 89

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
           L +CA+    + G  +++ + K   +LD     +LI MYA+ G ++ A +VF     +DV
Sbjct: 90  LKSCAKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDV 149

Query: 206 SAYTSAIFGLAMNGHSI-------------------------------EAFELFENMKSK 234
            + T+ I G A  G                                  EA ELF+ M   
Sbjct: 150 VSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRT 209

Query: 235 GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEE 294
            + PD  + ++VLSAC+  G +E G      + D HG    L      + L  + G +E 
Sbjct: 210 NVRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEI 269

Query: 295 AENFIASMPMKPDNVIWGTLLGA 317
           A      +  K D V W TL+G 
Sbjct: 270 ASGLFEGLSCK-DVVSWNTLIGG 291


>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Glycine max]
          Length = 640

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 217/510 (42%), Positives = 324/510 (63%), Gaps = 2/510 (0%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           ++ F   +FV  +LI  Y+ CG    AR VFDE  + +VV+WN+++    R G++     
Sbjct: 131 RHGFDAHIFVGTTLISMYAECGDSGSARRVFDEMSEPNVVTWNAVLTAAFRCGDVEGAQD 190

Query: 64  LFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEA 123
           +F  MP RN  SWN +L G  + G +  A RVF +MP R  VSW  +I GFA NG   EA
Sbjct: 191 VFGCMPVRNLTSWNGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGFAHNGCFDEA 250

Query: 124 LALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDM 183
              FRE+   ++  N   L  +LSACAQ GA ++G  ++ +++K        +  ALID 
Sbjct: 251 FGFFRELLREEIRTNEVSLTGVLSACAQAGAFEFGKILHGFVEKAGFLYVGSVNNALIDT 310

Query: 184 YAKCGSIDLAMQVFHSYG-DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSIS 242
           Y+KCG++ +A  VF +    + + ++TS I GLAM+G   EA +LF  M+  G+ PD I+
Sbjct: 311 YSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEESGVRPDGIT 370

Query: 243 YIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM 302
           +I++L ACSH G VE+G   F  M +++GI+P ++HY CMVDL GRA  L++A  FI  M
Sbjct: 371 FISLLYACSHSGLVEEGCGLFSKMKNLYGIEPAIEHYGCMVDLYGRAARLQKAYEFICEM 430

Query: 303 PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAE 362
           P+ P+ +IW TLLGAC +H N EM + +   L E D ++ G ++LLSN+Y    K ++  
Sbjct: 431 PVSPNAIIWRTLLGACSIHGNIEMAELVKARLAEMDPDNSGDHVLLSNVYAVAGKWKDVS 490

Query: 363 EVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKN-YGYN 421
            +R+TM +  +K+ PG S+IE+D V++ F+AG++ +E T+E ++   EI+ +++   GY 
Sbjct: 491 SIRRTMTEHSMKKTPGWSMIEIDKVIYGFVAGEKPNEVTEEAHEKLREIMLRLRTEAGYA 550

Query: 422 VETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLV 481
            + RSV+ DIEEEEKE  +  HSEKLA AFG+     G ++RIVKN+R+C DCH+ MKL+
Sbjct: 551 PQLRSVLHDIEEEEKEDSVSKHSEKLAAAFGIAKLPKGRILRIVKNLRVCGDCHTVMKLI 610

Query: 482 SKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           SKV++ +I +RDR  +H F+DG CSC +YW
Sbjct: 611 SKVYQVEIIVRDRSRFHSFKDGFCSCRDYW 640



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 83/170 (48%), Gaps = 13/170 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESD-DLDVVSWNSMINGYVRNGEILE 60
           V K  F Y   V N+LI  YS CG V  AR VF        +VSW S+I G   +G   E
Sbjct: 292 VEKAGFLYVGSVNNALIDTYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHGCGEE 351

Query: 61  GLKLFDKMPQ---RND-VSWNSILGGLVRFGSVDDACRVFNQMP-----KRSLVSWVVLI 111
            ++LF +M +   R D +++ S+L      G V++ C +F++M      + ++  +  ++
Sbjct: 352 AIQLFHEMEESGVRPDGITFISLLYACSHSGLVEEGCGLFSKMKNLYGIEPAIEHYGCMV 411

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161
             + +  R ++A     EM    + PN+ I  +LL AC+  G ++    V
Sbjct: 412 DLYGRAARLQKAYEFICEM---PVSPNAIIWRTLLGACSIHGNIEMAELV 458


>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Cucumis sativus]
          Length = 614

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 221/510 (43%), Positives = 320/510 (62%), Gaps = 31/510 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K+ F YD  V++ LI  Y+    +     VF+     D+V   +M++   + G+I   
Sbjct: 136 LIKHGFEYDPHVESGLIFMYAEMSCLSSCHRVFESVQKPDLVCQTTMVSACAKCGDI--- 192

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
                               G  R         +F+ MP+R  VSW  +I+G+AQ G+ +
Sbjct: 193 --------------------GFAR--------NLFDSMPQRDFVSWNAMIAGYAQRGQSR 224

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
           EAL LF+ MQ   ++ N   ++S+++AC  LGALD G W ++YI+K  I++   L  AL+
Sbjct: 225 EALNLFKLMQMDGVKVNEVSMISVVTACTHLGALDQGKWAHAYIEKNKIQMTVNLGTALV 284

Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
           DMY KCG++D A++VF    +K+V  +++AI GLAMNG+  +  ELF  MK +GI+P+ I
Sbjct: 285 DMYFKCGNVDRALKVFWEMNEKNVYTWSTAIGGLAMNGYGQKCLELFSFMKHEGIAPNEI 344

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
           ++I+VL  CS +G+V++G  +F SM   HGI+P L+HY CMVDL GRAG LEEA NFI +
Sbjct: 345 TFISVLKGCSVVGFVDEGRSHFDSMKRDHGIEPRLEHYGCMVDLYGRAGRLEEALNFINT 404

Query: 302 MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361
           MP+KP    WG LL ACR+++N E+G+     LIE +  + G Y+ LSNIY +T   +  
Sbjct: 405 MPLKPHAGAWGALLNACRMYKNMELGEFASRKLIEVEGKNHGAYVSLSNIYADTGNWDRV 464

Query: 362 EEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYN 421
             VR++M+   I + PGCS++E++G VHEF +GD+SH     I   W EI K++K  GY 
Sbjct: 465 SNVRQSMKAEGISKLPGCSVMEVNGEVHEFFSGDKSHPSYDVIETMWGEISKRLKLAGYV 524

Query: 422 VETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLV 481
             T SV+FDIEEEEKE  +  HSEK+A+AFGL   K G  IRIVKN+RIC DCH   K++
Sbjct: 525 ASTNSVLFDIEEEEKEDALCKHSEKMAIAFGLFSLKEGLPIRIVKNLRICWDCHDVSKMI 584

Query: 482 SKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           SK+F+R+I +RDR  +HHF+DG CSC ++W
Sbjct: 585 SKIFEREIIVRDRNRFHHFKDGECSCKDFW 614



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 118/257 (45%), Gaps = 36/257 (14%)

Query: 94  RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE-MQSLD-LEPNSAILVSLLSACAQ 151
           ++ +Q  K +L +   +I  ++++  P ++   + + +QS D + P++     L+  CAQ
Sbjct: 64  QILDQCAKPTLFALNSMIRAYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLVRTCAQ 123

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMY--------------------------- 184
             A + G  V+  + K   + D  + + LI MY                           
Sbjct: 124 -SACEAGPAVHGALIKHGFEYDPHVESGLIFMYAEMSCLSSCHRVFESVQKPDLVCQTTM 182

Query: 185 ----AKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
               AKCG I  A  +F S   +D  ++ + I G A  G S EA  LF+ M+  G+  + 
Sbjct: 183 VSACAKCGDIGFARNLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVNE 242

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
           +S I+V++AC+HLG +++G  + H+  + + I+  ++    +VD+  + G ++ A     
Sbjct: 243 VSMISVVTACTHLGALDQG-KWAHAYIEKNKIQMTVNLGTALVDMYFKCGNVDRALKVFW 301

Query: 301 SMPMKPDNVIWGTLLGA 317
            M  K +   W T +G 
Sbjct: 302 EMNEK-NVYTWSTAIGG 317


>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 684

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 226/513 (44%), Positives = 319/513 (62%), Gaps = 33/513 (6%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           MVVK+ F  +++V NS+I   SV  R+ DAR                             
Sbjct: 203 MVVKSGFESNLYVGNSVINMCSVFARMEDAR----------------------------- 233

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
             K+F++M +R+  SW S+LGG  + G +D AC +FN MP R+ VSW V+ISGF   GR 
Sbjct: 234 --KVFNQMSERDVFSWTSLLGGYAKHGEMDRACELFNMMPVRNDVSWAVMISGFLGCGRY 291

Query: 121 KEALALFREMQSLD-LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
            EAL  F  M   D + PN A+LV +LSACA LGALD GNW++ YI K  I+  S +  A
Sbjct: 292 PEALTFFCNMLCDDRVNPNEAVLVCVLSACAHLGALDQGNWIHLYIDKIGIRQSSNISTA 351

Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
           LIDMYAKCG ID A +VF+    +DV ++TS I GL+ +G   +A  +F  M  + + P+
Sbjct: 352 LIDMYAKCGRIDCASRVFNGICKRDVLSFTSMISGLSYHGLGKDALRVFYQMLDENVMPN 411

Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI 299
            I+ + VL+ CSH G VE+G     +M  + GI P+++HY C +DLLGRAG LE A   +
Sbjct: 412 EITILGVLNGCSHSGLVEEGSSILANMESLWGIAPKIEHYGCYIDLLGRAGYLERALEVV 471

Query: 300 ASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIE-SDQNHDGRYILLSNIYVETLKG 358
            +MPM+PD VIW  LL A R+H N  +G++I + + +    +H+G  +LLSN+Y    + 
Sbjct: 472 KTMPMEPDIVIWRALLSASRIHHNVNLGEQIISHIGQLKSSDHNGGEVLLSNLYASLGRW 531

Query: 359 ENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNY 418
           E   E+RK M  R+ + +PGCS IE++G+VHEF   D+ H +  EI     EI+K++   
Sbjct: 532 ERVTEMRKLMVDRRSESSPGCSWIEVNGLVHEFRVADQLHPQIVEIRNKLNEILKRLSQI 591

Query: 419 GYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAM 478
           GY+  T  V FD+ EEEKE  + +HSEKLA+AFGL+ T+PG++IRIVKN+R C DCHSA+
Sbjct: 592 GYSANTMQVSFDLNEEEKEQAVAWHSEKLAIAFGLMSTEPGTLIRIVKNLRTCEDCHSAL 651

Query: 479 KLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           K +S+V+ R+I +RDR  +H F +G CSC ++W
Sbjct: 652 KTISQVYGREIVVRDRSRFHTFIEGDCSCKDFW 684



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 104/232 (44%), Gaps = 37/232 (15%)

Query: 100 PKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD----LEPNSAILVSLLSACAQLGAL 155
           P   +  W V+I  +++    +E + LF  M +LD    + P+      ++++C+   +L
Sbjct: 135 PSPPIKLWNVMIRTYSKIRNSQEPIHLFLRMLTLDGPMQVVPDEYTFTFVITSCSHQISL 194

Query: 156 DYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGL 215
            YG  V+  + K   + +  +  ++I+M +    ++ A +VF+   ++DV ++TS + G 
Sbjct: 195 IYGEIVHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMSERDVFSWTSLLGGY 254

Query: 216 AMNGHSIEAFELFENMKSKG--------------------------------ISPDSISY 243
           A +G    A ELF  M  +                                 ++P+    
Sbjct: 255 AKHGEMDRACELFNMMPVRNDVSWAVMISGFLGCGRYPEALTFFCNMLCDDRVNPNEAVL 314

Query: 244 IAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA 295
           + VLSAC+HLG +++G  + H   D  GI+   +    ++D+  + G ++ A
Sbjct: 315 VCVLSACAHLGALDQG-NWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDCA 365


>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
 gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
          Length = 719

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 217/516 (42%), Positives = 325/516 (62%), Gaps = 5/516 (0%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDL-----DVVSWNSMINGYVRN 55
           M+++     D FV+ SL+  Y    ++  A  VFDES +        + WN +I G  + 
Sbjct: 204 MILRCGIELDSFVRVSLVDMYVKVEKLGSAFKVFDESPERFDSGSSALLWNVLIKGCCKA 263

Query: 56  GEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFA 115
           G + + +KLF  MP++ +VSW++++ G  + G +D A  +F+QMP++++VSW  ++ GF+
Sbjct: 264 GSMKKAVKLFKAMPKKENVSWSTLIDGFAKNGDMDRAMELFDQMPEKNVVSWTTMVDGFS 323

Query: 116 QNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI 175
           +NG  ++AL++F +M    + PN+  +VS LSACA++G L+ G  ++ YI+   + L   
Sbjct: 324 RNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEA 383

Query: 176 LCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG 235
           L  AL+DMYAKCG+I+ A +VF     K +  +T  I+G A++GHS +A   F+ M   G
Sbjct: 384 LGTALVDMYAKCGNIESASEVFGETEQKSIRTWTVMIWGWAIHGHSEQAIACFKQMMFAG 443

Query: 236 ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA 295
           I PD + ++A+L+AC H G V+ G  +F SM   + I+P + HY  +VD+LGR+G L+EA
Sbjct: 444 IKPDEVVFLALLTACMHSGQVDIGLNFFDSMRLDYCIEPSMKHYTLIVDMLGRSGQLKEA 503

Query: 296 ENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVET 355
             FI  MPM PD VIWG L  ACR H+  +M +   N L++ +  H G YI LSN Y   
Sbjct: 504 LRFIERMPMNPDFVIWGALFCACRAHKKTKMAKFALNKLLKLEPTHTGNYIFLSNAYAAL 563

Query: 356 LKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKI 415
            + E+AE VR  M+ R + +  G S IE++G VH F++GD  H+ ++ I    EEI+   
Sbjct: 564 GQWEDAERVRVLMQNRGVHKNSGWSCIEVEGQVHRFVSGDHDHKDSKAICLKLEEIMAGA 623

Query: 416 KNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCH 475
              GY   T  V+ ++E+EEKE V+G H EKLALAF LICT PG  IRIVKN+++C DCH
Sbjct: 624 VKQGYIPGTEWVLHNMEQEEKEDVLGSHGEKLALAFALICTSPGMTIRIVKNLQVCGDCH 683

Query: 476 SAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           S MK  SK+ +R+I +RD K +HHF+DGSCSC ++W
Sbjct: 684 SLMKYASKISQREIMLRDMKRFHHFKDGSCSCRDHW 719



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/305 (20%), Positives = 117/305 (38%), Gaps = 69/305 (22%)

Query: 88  SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLS 147
           S++ +  VFN    ++L ++  LI G   N     A+  FR M    ++P+      +L 
Sbjct: 128 SINHSLAVFNHHKPKNLFTFNALIRGLTTNSHFFNAIFHFRLMLRSGIKPDRLTYPFVLK 187

Query: 148 ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYA---------------------- 185
           + A L + + G  ++  I +  I+LDS +  +L+DMY                       
Sbjct: 188 SMAGLFSTELGMAIHCMILRCGIELDSFVRVSLVDMYVKVEKLGSAFKVFDESPERFDSG 247

Query: 186 --------------KCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM 231
                         K GS+  A+++F +   K+  ++++ I G A NG    A ELF+ M
Sbjct: 248 SSALLWNVLIKGCCKAGSMKKAVKLFKAMPKKENVSWSTLIDGFAKNGDMDRAMELFDQM 307

Query: 232 KSK-------------------------------GISPDSISYIAVLSACSHLGWVEKGF 260
             K                               G+ P++ + ++ LSAC+ +G +E G 
Sbjct: 308 PEKNVVSWTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAKIGGLEAGL 367

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
              H     +G+         +VD+  + G +E A         K     W  ++    +
Sbjct: 368 -RIHKYIKDNGLHLTEALGTALVDMYAKCGNIESASEVFGETEQKSIRT-WTVMIWGWAI 425

Query: 321 HRNAE 325
           H ++E
Sbjct: 426 HGHSE 430



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 98/227 (43%), Gaps = 18/227 (7%)

Query: 99  MPKRSLVSWVVLISGFAQNGRPKEAL-ALFREMQSLDLEPNSAILVSLLSACAQLGALDY 157
           +P  +       IS  ++N +PK +L ALF    +    P  A  +SL+     +  L  
Sbjct: 45  IPSPNPPEITTTISKTSEN-KPKSSLSALFIPPTT----PTEAHFISLIHGSKTILQL-- 97

Query: 158 GNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAM 217
            + +++ I    +   S++   LI   +   SI+ ++ VF+ +  K++  + + I GL  
Sbjct: 98  -HQIHAQIIIHNLSSSSLITTQLISSSSLRKSINHSLAVFNHHKPKNLFTFNALIRGLTT 156

Query: 218 NGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELD 277
           N H   A   F  M   GI PD ++Y  VL + + L   E G    H M    GI  ELD
Sbjct: 157 NSHFFNAIFHFRLMLRSGIKPDRLTYPFVLKSMAGLFSTELGM-AIHCMILRCGI--ELD 213

Query: 278 HY--ACMVDLLGRAGLLEEAENFIASMPMKPDN----VIWGTLLGAC 318
            +    +VD+  +   L  A       P + D+    ++W  L+  C
Sbjct: 214 SFVRVSLVDMYVKVEKLGSAFKVFDESPERFDSGSSALLWNVLIKGC 260


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 232/576 (40%), Positives = 334/576 (57%), Gaps = 72/576 (12%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K     D+ V  SLI  Y+  G V DA  VFD S   DVVS+ +MI GY   G + + 
Sbjct: 104 ILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKA 163

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPK-------------------- 101
            K+FD++P ++ VSWN+++ G    G   +A  +FN+M K                    
Sbjct: 164 QKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHS 223

Query: 102 ------RSLVSWV-------------VLISGFAQNGRPKEALALF--------------- 127
                 R + SW+              LI  +++ G  + A  LF               
Sbjct: 224 GNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLI 283

Query: 128 ----------------REMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC-- 169
                           +EM  L   PN   ++S+L ACA LGA+D G W++ YI KK   
Sbjct: 284 GGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKG 343

Query: 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFE 229
           I  ++ L  +LIDMYAKCG+I+ A QVF +  +K +S+  + IFG AM+G +  AF+L  
Sbjct: 344 IITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLS 403

Query: 230 NMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRA 289
            MK  GI PD I+++ +LSACSH G  + G   F SM   + I+P+L+HY CM+DLLGR+
Sbjct: 404 RMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLEHYGCMIDLLGRS 463

Query: 290 GLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLS 349
           GL +EAE  I SM M+PD VIWG+LL AC++H+N E+G+ I   L++ +  + G Y+LLS
Sbjct: 464 GLFKEAEELINSMTMEPDGVIWGSLLKACKIHKNLELGELIAQKLMKIEPKNPGSYVLLS 523

Query: 350 NIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWE 409
           NIY  + + ++   VR  +  + +K+ PGCS IE+D +VHEFL GD+ H + +EIY+  E
Sbjct: 524 NIYATSARWDDVARVRTLLNDKGLKKVPGCSSIEIDSMVHEFLIGDKFHPQNKEIYKMLE 583

Query: 410 EIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIR 469
           EI   +   G+  +T  V+ ++EEE KE  + YHSEKLA+AFGLI TKPG+ +RIVKN+R
Sbjct: 584 EIDSLLAETGFVSDTSEVLQEMEEELKEGALSYHSEKLAIAFGLISTKPGTKLRIVKNLR 643

Query: 470 ICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSC 505
           +C +CH A KL+SK++KR+I  RDR  +HHF+DG C
Sbjct: 644 VCRNCHEATKLISKIYKREIIARDRSRFHHFKDGMC 679



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 115/263 (43%), Gaps = 33/263 (12%)

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
           F  +  A  VF  + + + +SW  +I G A +  P  AL L+  M SL L PNS     L
Sbjct: 25  FHGLPYAISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFL 84

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
             +CA+  A   G  +++ I K  + +D  +  +LI MYA+ G ++ A +VF +   +DV
Sbjct: 85  FKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDV 144

Query: 206 SAYTSAIFGLAMNGHS-------------------------------IEAFELFENMKSK 234
            +YT+ I G A  G+                                 EA ELF  M   
Sbjct: 145 VSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKM 204

Query: 235 GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEE 294
            + PD  +   VLS C+H G VE G    HS  D HG    L     ++DL  + G +E 
Sbjct: 205 DVKPDESTMATVLSTCTHSGNVELG-RQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMER 263

Query: 295 AENFIASMPMKPDNVIWGTLLGA 317
           A      +  K D + W TL+G 
Sbjct: 264 AHGLFEGLQYK-DVISWNTLIGG 285


>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
 gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 216/479 (45%), Positives = 321/479 (67%), Gaps = 14/479 (2%)

Query: 43  VSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKR 102
           V  NS+I+ YV    + E  ++F  +P  + VSW S++ G  ++G +D+A  +F  MP++
Sbjct: 158 VCLNSLIHMYVTFQALEEARRVFHTIPHPDSVSWTSLISGYSKWGLIDEAFTIFQLMPQK 217

Query: 103 SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA----ILVSLLSACAQLGALDYG 158
           +  SW  +++ + Q  R  EA ALF  M++   E N+     +  ++LSAC  LGALD G
Sbjct: 218 NSASWNAMMAAYVQTNRFHEAFALFDRMKA---ENNNVLDKFVATTMLSACTGLGALDQG 274

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD--KDVSAYTSAIFGLA 216
            W++ YI++  I+LDS L  A++DMY KCG ++ A+QVFHS     + +S++   I GLA
Sbjct: 275 KWIHEYIKRNGIELDSKLTTAIVDMYCKCGCLEKALQVFHSLPLPCRWISSWNCMIGGLA 334

Query: 217 MNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPEL 276
           M+G+   A +LF+ M+ + ++PD I+++ +L+AC+H G VE+G  YF  M  V+GI+P +
Sbjct: 335 MHGNGEAAIQLFKEMERQRVAPDDITFLNLLTACAHSGLVEEGRNYFSYMIRVYGIEPRM 394

Query: 277 DHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIE 336
           +H+ CMVDLLGRAG++ EA   I  MP+ PD  + GTLLGAC+ HRN E+G+ IG  +IE
Sbjct: 395 EHFGCMVDLLGRAGMVPEARKLIDEMPVSPDVTVLGTLLGACKKHRNIELGEEIGRRVIE 454

Query: 337 SDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDR 396
            + N+ GRY+LL+N+Y    K E+A +VRK M  R +K+APG S+IEL G VHEF+AG+R
Sbjct: 455 LEPNNSGRYVLLANLYANAGKWEDAAKVRKLMDDRGVKKAPGFSMIELQGTVHEFIAGER 514

Query: 397 SHEKTQEIYQFWEEIVKKIKNYGYNVETRSVM----FDIEEEEKETVIGYHSEKLALAFG 452
           +H + +E++    E+++ +K+ GY  +T  V+    FD EEE+ E  + YHSEKLA+AFG
Sbjct: 515 NHPQAKELHAKVYEMLEHLKSVGYVADTNGVLHGHDFD-EEEDGENPLYYHSEKLAIAFG 573

Query: 453 LICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           L  TKPG  +RI+KN+RIC DCH A KL+S VF R+I +RDR  +H F+ G CSC +YW
Sbjct: 574 LSRTKPGETLRILKNLRICEDCHHACKLISTVFDREIIVRDRTRFHRFKMGQCSCQDYW 632



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 121/271 (44%), Gaps = 12/271 (4%)

Query: 61  GLKLFDKMPQRNDVSWNSILGGLV--RFGSVDDACRVFNQMPKRS-LVSWVVLISGFAQN 117
            LKLFD +PQ +   +N+I+ G +  +    +    +++ M + S L +     S     
Sbjct: 76  ALKLFDSIPQPDAFLYNTIIKGFLHSQLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIAC 135

Query: 118 GRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILC 177
            + +  + +   +       +S  L SL+       AL+    V+  I       DS+  
Sbjct: 136 RKIQHGMQIHAHLFKFGFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHP----DSVSW 191

Query: 178 AALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGIS 237
            +LI  Y+K G ID A  +F     K+ +++ + +          EAF LF+ MK++  +
Sbjct: 192 TSLISGYSKWGLIDEAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNN 251

Query: 238 P-DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAE 296
             D      +LSAC+ LG +++G  + H     +GI+ +      +VD+  + G LE+A 
Sbjct: 252 VLDKFVATTMLSACTGLGALDQG-KWIHEYIKRNGIELDSKLTTAIVDMYCKCGCLEKAL 310

Query: 297 NFIASMPMKPDNVI--WGTLLGACRVHRNAE 325
               S+P+ P   I  W  ++G   +H N E
Sbjct: 311 QVFHSLPL-PCRWISSWNCMIGGLAMHGNGE 340



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 97/221 (43%), Gaps = 27/221 (12%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLD---VVSWNSMINGYVRNGEI 58
           + +N    D  +  +++  Y  CG +  A  VF  S  L    + SWN MI G   +G  
Sbjct: 281 IKRNGIELDSKLTTAIVDMYCKCGCLEKALQVF-HSLPLPCRWISSWNCMIGGLAMHGNG 339

Query: 59  LEGLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDA-------CRVFNQMPKRSLVSW 107
              ++LF +M ++    +D+++ ++L      G V++         RV+   P+      
Sbjct: 340 EAAIQLFKEMERQRVAPDDITFLNLLTACAHSGLVEEGRNYFSYMIRVYGIEPRMEHFGC 399

Query: 108 VVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK 167
           +V + G A  G   EA  L  EM    + P+  +L +LL AC +   ++ G      I +
Sbjct: 400 MVDLLGRA--GMVPEARKLIDEM---PVSPDVTVLGTLLGACKKHRNIELG----EEIGR 450

Query: 168 KCIKLD---SILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
           + I+L+   S     L ++YA  G  + A +V     D+ V
Sbjct: 451 RVIELEPNNSGRYVLLANLYANAGKWEDAAKVRKLMDDRGV 491


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/547 (42%), Positives = 326/547 (59%), Gaps = 45/547 (8%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DV    +LI  Y+  G  R AR VFDE  + DVVSWN+MI GYV NG   E L+LF +M 
Sbjct: 129 DVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMM 188

Query: 70  Q--------------------------RNDVSW-----------------NSILGGLVRF 86
           +                          R   SW                 N+++    + 
Sbjct: 189 RTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKC 248

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           G V+ A  +F  +  + +VSW  LI G+      KEAL LF+EM      PN   L+S+L
Sbjct: 249 GDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVL 308

Query: 147 SACAQLGALDYGNWVYSYIQKKC--IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
            ACA LGA+D G W++ YI KK   +  ++ L  +LIDMYAKCG I+ A QVF+S   + 
Sbjct: 309 PACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRS 368

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           +S++ + IFG AM+G +  AF+LF  M+   + PD I+++ +LSACSH G ++ G   F 
Sbjct: 369 LSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFK 428

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
           SM   + + P+L+HY CM+DLLG +GL +EAE  I +MPM+PD VIW +LL AC+ H N 
Sbjct: 429 SMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKHGNL 488

Query: 325 EMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIEL 384
           E+ +     LI+ +  + G Y+LLSNIY    + E+   VR  +  + +K+ PGCS IE+
Sbjct: 489 ELAESFAQKLIKIEPENSGSYVLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGCSSIEV 548

Query: 385 DGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHS 444
           D VVHEF+ GD+ H + +EIY   EE+  +++  G+  +T  V+ ++EEE KE  + +HS
Sbjct: 549 DSVVHEFIIGDKLHPRRREIYHMLEEMDVQLEEAGFAPDTSEVLQEMEEEWKEGALRHHS 608

Query: 445 EKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGS 504
           EKLA+AFGLI TKPG+ + IVKN+R+C +CH A KL+SK++KR+I  RDR  +HHF DG 
Sbjct: 609 EKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIVARDRTRFHHFRDGV 668

Query: 505 CSCLEYW 511
           CSC +YW
Sbjct: 669 CSCCDYW 675



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 88/269 (32%), Positives = 146/269 (54%), Gaps = 7/269 (2%)

Query: 40  LDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQM 99
           LD     S+I+ Y RNG + +  K+FD    R+ VS  +++ G    G    A +VF+++
Sbjct: 97  LDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTALITGYASRGDFRSARKVFDEI 156

Query: 100 PKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGN 159
            +R +VSW  +I+G+ +NGR +EAL LF+EM   ++ P+   LVS++SACAQ G+++ G 
Sbjct: 157 TERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGR 216

Query: 160 WVYSYIQKKC----IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGL 215
            V+S++              +  ALID+Y+KCG ++ A  +F     KDV ++ + I G 
Sbjct: 217 QVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGY 276

Query: 216 AMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD--VHGIK 273
                  EA  LF+ M   G  P+ ++ ++VL AC+HLG ++ G  + H   D  + G+ 
Sbjct: 277 THTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIG-RWIHVYIDKKLKGVT 335

Query: 274 PELDHYACMVDLLGRAGLLEEAENFIASM 302
            E      ++D+  + G +E A     SM
Sbjct: 336 NETSLRTSLIDMYAKCGDIEAAHQVFNSM 364



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 116/266 (43%), Gaps = 35/266 (13%)

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
           F  +  A  VF  + + +L+ W  ++ G A +  P  AL ++  M SL   PNS     L
Sbjct: 11  FDGLPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFL 70

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
           L +CA+  A + G  +++ + K    LD  +  +LI MYA+ G ++ A +VF +   +DV
Sbjct: 71  LKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDV 130

Query: 206 SAYTSAIFGLAM-------------------------------NGHSIEAFELFENMKSK 234
            + T+ I G A                                NG   EA ELF+ M   
Sbjct: 131 VSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRT 190

Query: 235 GISPDSISYIAVLSACSHLGWVEKG---FYYFHSMFDVHGIKPELDHYACMVDLLGRAGL 291
            + PD  + ++V+SAC+  G +E G     +     D HG    L     ++DL  + G 
Sbjct: 191 NVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGD 250

Query: 292 LEEAENFIASMPMKPDNVIWGTLLGA 317
           +E A      +  K D V W TL+G 
Sbjct: 251 VETAFGLFEGLSCK-DVVSWNTLIGG 275


>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Glycine max]
          Length = 616

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 219/510 (42%), Positives = 324/510 (63%), Gaps = 31/510 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K+ F  D  V+  L+  Y+  G +     VFD + + D+V+  +M+N           
Sbjct: 138 VIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPDLVTQTAMLNA---------- 187

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
                                  + G +D A ++F++MP+R  V+W  +I+G+AQ GR +
Sbjct: 188 ---------------------CAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSR 226

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
           EAL +F  MQ   ++ N   +V +LSAC  L  LD+G WV++Y+++  +++   L  AL+
Sbjct: 227 EALDVFHLMQMEGVKLNEVSMVLVLSACTHLQVLDHGRWVHAYVERYKVRMTVTLGTALV 286

Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
           DMYAKCG++D AMQVF    +++V  ++SAI GLAMNG   E+ +LF +MK +G+ P+ I
Sbjct: 287 DMYAKCGNVDRAMQVFWGMKERNVYTWSSAIGGLAMNGFGEESLDLFNDMKREGVQPNGI 346

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
           ++I+VL  CS +G VE+G  +F SM +V+GI P+L+HY  MVD+ GRAG L+EA NFI S
Sbjct: 347 TFISVLKGCSVVGLVEEGRKHFDSMRNVYGIGPQLEHYGLMVDMYGRAGRLKEALNFINS 406

Query: 302 MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361
           MPM+P    W  LL ACR+++N E+G+     ++E +  +DG Y+LLSNIY +    E+ 
Sbjct: 407 MPMRPHVGAWSALLHACRMYKNKELGEIAQRKIVELEDKNDGAYVLLSNIYADYKNWESV 466

Query: 362 EEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYN 421
             +R+TM+ + +K+ PGCS+IE+DG VHEF+ GD+SH +  EI    EEI K ++  GY 
Sbjct: 467 SSLRQTMKAKGVKKLPGCSVIEVDGEVHEFIVGDKSHPRYDEIEMKLEEISKCLRLSGYV 526

Query: 422 VETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLV 481
             T  V+FDIEEEEKE  +  HSEK+A+AFGLI  K    IR+V N+RIC DCH+  K++
Sbjct: 527 ANTNPVLFDIEEEEKEDALSKHSEKVAIAFGLISLKGVVPIRVVMNLRICWDCHNVAKMI 586

Query: 482 SKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           SK+F R+I +RDR  +HHF+DG CSC +YW
Sbjct: 587 SKIFNREIIVRDRNRFHHFKDGECSCKDYW 616



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 117/265 (44%), Gaps = 38/265 (14%)

Query: 88  SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM---QSLDLEPNSAILVS 144
           ++D A ++ N     +L +   +I  ++++  P ++   +  +    + +L P++     
Sbjct: 58  NLDYANKLLNHNNNPTLFTLNSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTF 117

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYA------------------- 185
           L+  CAQL A   G  V+  + K   +LD  +   L+ MYA                   
Sbjct: 118 LVRTCAQLQAHVTGLCVHGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPD 177

Query: 186 ------------KCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKS 233
                       KCG ID A ++F    ++D   + + I G A  G S EA ++F  M+ 
Sbjct: 178 LVTQTAMLNACAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQM 237

Query: 234 KGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLE 293
           +G+  + +S + VLSAC+HL  ++ G  + H+  + + ++  +     +VD+  + G ++
Sbjct: 238 EGVKLNEVSMVLVLSACTHLQVLDHG-RWVHAYVERYKVRMTVTLGTALVDMYAKCGNVD 296

Query: 294 EAENFIASMPMKPDNV-IWGTLLGA 317
            A        MK  NV  W + +G 
Sbjct: 297 RAMQVFWG--MKERNVYTWSSAIGG 319


>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
          Length = 505

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 208/473 (43%), Positives = 304/473 (64%), Gaps = 29/473 (6%)

Query: 39  DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQ 98
           + D++    +++ Y ++G + E   LFD M +RN  S                       
Sbjct: 62  EYDMILQTGLLDFYAKHGYVEEARNLFDNMTERNSNS----------------------- 98

Query: 99  MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
                 V+W  +IS + Q G    A+++F++MQS +++P    +VSLLSACA LGALD G
Sbjct: 99  ------VTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMG 152

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
            W++ YI+ K +K+D +L  ALIDMY KCG+++ A+ VFH    K++  + S I GL MN
Sbjct: 153 EWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMN 212

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDH 278
           G   EA   F  M+ +GI PD ++++ +LS CSH G +  G  YF  M  V+G++P ++H
Sbjct: 213 GRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEH 272

Query: 279 YACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338
           Y CMVDLLGRAG L+EA   I +MPMKP++++ G+LL AC++H++ ++G+++   L+E D
Sbjct: 273 YGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELD 332

Query: 339 QNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSH 398
               G Y+ LSN+Y    + ++    RK M KR + + PGCS IE++ +VHEF+AGD SH
Sbjct: 333 PCDGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAGDTSH 392

Query: 399 EKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKP 458
            +  +I  F +EI K++K  G+   T +V+ DIEEEEKE  I YHSE++A+AFGL+ T P
Sbjct: 393 PQFTQINAFLDEIAKELKGQGHVPNTANVLHDIEEEEKEGAIRYHSERIAVAFGLMSTPP 452

Query: 459 GSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           G  IR+VKN+R CSDCHSAMKL+S  FKR+I +RDRK +HHF +GSCSC +YW
Sbjct: 453 GKTIRVVKNLRTCSDCHSAMKLISNAFKREIIVRDRKRFHHFRNGSCSCNDYW 505



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 118/291 (40%), Gaps = 76/291 (26%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDL--DVVSWNSMINGYVRNGEIL 59
           ++K  F YD+ ++  L+ FY+  G V +AR +FD   +   + V+WN+MI+ YV+ GE  
Sbjct: 56  IMKMGFEYDMILQTGLLDFYAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFG 115

Query: 60  EGLKLFDKMPQRN----DVSWNSILGGLVRFGSVD------------------------- 90
             + +F +M   N    +V+  S+L      G++D                         
Sbjct: 116 TAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALI 175

Query: 91  ----------DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
                      A  VF+ + ++++  W  +I G   NGR +EA+A F  M+   ++P+  
Sbjct: 176 DMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGV 235

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
             V +LS C+  G L  G   +S                               ++   Y
Sbjct: 236 TFVGILSGCSHSGLLSAGQRYFS-------------------------------EMLGVY 264

Query: 201 G-DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250
           G +  V  Y   +  L   G+  EA EL   M  K   P+S+   ++L AC
Sbjct: 265 GLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMK---PNSMVLGSLLRAC 312



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 88/182 (48%), Gaps = 3/182 (1%)

Query: 116 QNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI 175
           ++G   + L  +  M   D+ P+      +L +CA  G    G   +  I K   + D I
Sbjct: 7   ESGVCPDFLGFYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMI 66

Query: 176 LCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYT--SAIFGLAMNGHSIEAFELFENMKS 233
           L   L+D YAK G ++ A  +F +  +++ ++ T  + I      G    A  +F+ M+S
Sbjct: 67  LQTGLLDFYAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQS 126

Query: 234 KGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLE 293
           + + P  ++ +++LSAC+HLG ++ G  + H       +K ++     ++D+  + G LE
Sbjct: 127 ENVKPTEVTMVSLLSACAHLGALDMG-EWIHGYIRTKRLKIDVVLGNALIDMYCKCGALE 185

Query: 294 EA 295
            A
Sbjct: 186 AA 187


>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
          Length = 1130

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 224/514 (43%), Positives = 323/514 (62%), Gaps = 35/514 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++   A D FV+ SLI  YS CG +  AR                              
Sbjct: 90  ILRFGLAIDPFVQTSLISMYSSCGNLGFAR------------------------------ 119

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
            ++FD++PQ +  SWNSI+    + G VD A  +F  MP+R+++SW  +I+G+ + G+ K
Sbjct: 120 -QVFDEIPQPDLPSWNSIINANFQAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYK 178

Query: 122 EALALFREMQSL---DLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCA 178
           EALALFREMQ L   D+ PN   +  +L+AC +LGAL++G W ++YI K  + +D +L  
Sbjct: 179 EALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGT 238

Query: 179 ALIDMYAKCGSIDLAMQVFHSYG-DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGIS 237
           ALIDMYAKCGS++ A  VF + G +KDV A+++ I GLAM+G + E   LF  M ++G+ 
Sbjct: 239 ALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVR 298

Query: 238 PDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAEN 297
           P++++++AV  AC H G V +G  Y   M + + I P + HY CMVDL GRAG ++EA N
Sbjct: 299 PNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWN 358

Query: 298 FIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLK 357
            + SMPM+PD ++WG LL   R+H + E  +     LIE +  + G Y+LLSN+Y +  +
Sbjct: 359 VVKSMPMEPDVLVWGALLSGSRMHGDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGR 418

Query: 358 GENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKN 417
            E+   VR  M    IK+ PGCSLIE+ GV+HEF  GD SH +T++I+   EEI++++K 
Sbjct: 419 WEDVRHVRDLMETMGIKKVPGCSLIEVGGVLHEFFVGDDSHPETRQIHMMLEEILERLKV 478

Query: 418 YGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSA 477
            GY   T+ V+ D++EE KE  +  HSEKLALA+G + T PG+ IRIVKN+RIC DCH A
Sbjct: 479 EGYVGNTKEVLLDLDEEGKELALSLHSEKLALAYGFLKTSPGTPIRIVKNLRICRDCHVA 538

Query: 478 MKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           +K++SKVF R+I +RD   +HHF  G CSC +YW
Sbjct: 539 IKMISKVFDREIIVRDCNRFHHFTQGLCSCRDYW 572



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 104/258 (40%), Gaps = 40/258 (15%)

Query: 107 WVVLISGFAQ-----NGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161
           W  LI    Q      G     +++F  M+   ++P+      LL + A    L  G  V
Sbjct: 27  WNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGRSV 86

Query: 162 YSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS----------- 210
           ++ I +  + +D  +  +LI MY+ CG++  A QVF      D+ ++ S           
Sbjct: 87  HAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIINANFQAGLV 146

Query: 211 --------------------AIFGLAMNGHSIEAFELFENMKSKGIS---PDSISYIAVL 247
                                I G    G   EA  LF  M+  G++   P+  +   VL
Sbjct: 147 DMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVL 206

Query: 248 SACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPD 307
           +AC  LG +E G  + H+  D  G+  ++     ++D+  + G +E+A    +++    D
Sbjct: 207 AACGRLGALEHG-KWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKD 265

Query: 308 NVIWGTLLGACRVHRNAE 325
            + W  ++    +H  AE
Sbjct: 266 VMAWSAMISGLAMHGLAE 283


>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
 gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 215/503 (42%), Positives = 327/503 (65%), Gaps = 2/503 (0%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ 70
           +FV  +LI  Y  CG V  AR VFDE  + + ++WN+M+    R G++  G +LFD MP 
Sbjct: 141 LFVGTTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVTACCRGGDMKGGRELFDLMPV 200

Query: 71  RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM 130
           RN +SWN +L G  + G ++ A  +F +MP +  VSW  +I GFA NG  +EA + FRE+
Sbjct: 201 RNLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVSWSTMIVGFAHNGYFEEAFSFFREL 260

Query: 131 QSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSI 190
           Q   + PN   L  +LSACAQ GAL++G  ++ +I+K  +     +  AL+D Y+KCG++
Sbjct: 261 QRKGMRPNETSLTGVLSACAQAGALEFGKILHGFIEKSGLAWIVSVNNALLDTYSKCGNV 320

Query: 191 DLAMQVFHS-YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
            +A  VF     ++++ ++TS +  LAM+GH  EA  +F  M+  GI PD I++I++L A
Sbjct: 321 LMAQLVFERIMNERNIVSWTSMMAALAMHGHGEEAIGIFHKMEESGIRPDEIAFISLLYA 380

Query: 250 CSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNV 309
           CSH G VE+G  YF  M  ++ I+P ++HY CMVDL GRAG L++A  F+  MP+    +
Sbjct: 381 CSHAGLVEQGCEYFDKMKGMYNIEPSIEHYGCMVDLYGRAGQLQKAYEFVCQMPIPCTAI 440

Query: 310 IWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMR 369
           IW TLLGAC +H + ++ +++   L E D N+   ++LLSN Y    K ++A  VR++M 
Sbjct: 441 IWRTLLGACSMHGDVKLAEQVKERLSELDPNNSSDHVLLSNAYAVAGKWKDAASVRRSMT 500

Query: 370 KRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIK-NYGYNVETRSVM 428
           +++I + PG S+IE+D +++ FLAG + ++ T+E Y+  +EI+++++   GY  E   V+
Sbjct: 501 EQRITKTPGWSMIEVDKIMYTFLAGTKQYKITEEAYKKLKEIIRRLRVEGGYVPEIGRVL 560

Query: 429 FDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRK 488
            DIEEEEKE  +  HSEKLA+AFG+     G  IRIVKN+RIC DCH+ MKL+S+++K +
Sbjct: 561 HDIEEEEKEGSVSVHSEKLAVAFGIARLCKGRTIRIVKNLRICRDCHAVMKLISQIYKVE 620

Query: 489 ISIRDRKHYHHFEDGSCSCLEYW 511
           I +RDR  +H F+DG CSC +YW
Sbjct: 621 IVVRDRSRFHSFKDGYCSCRDYW 643



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 104/245 (42%), Gaps = 13/245 (5%)

Query: 88  SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE-PNSAILVSLL 146
           S+D ACR+F   P   +     LI G  ++ RP+++L  F EM+      P+S     ++
Sbjct: 54  SLDYACRLFRYTPNPDVFMHNTLIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIV 113

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
            A A L ++  G  ++       +     +   LI MY +CG +  A +VF    + +  
Sbjct: 114 KAAANLRSVRVGIQLHCQALVHGLDTHLFVGTTLISMYGECGFVGFARKVFDEMPEPNAI 173

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
           A+ + +      G      ELF+ M  + +    +S+  +L+  +  G +E        M
Sbjct: 174 AWNAMVTACCRGGDMKGGRELFDLMPVRNL----MSWNVMLAGYTKAGELELA----REM 225

Query: 267 FDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP---MKPDNVIWGTLLGACRVHRN 323
           F    +K ++  ++ M+      G  EEA +F   +    M+P+      +L AC     
Sbjct: 226 FLEMPMKDDVS-WSTMIVGFAHNGYFEEAFSFFRELQRKGMRPNETSLTGVLSACAQAGA 284

Query: 324 AEMGQ 328
            E G+
Sbjct: 285 LEFGK 289



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 83/163 (50%), Gaps = 15/163 (9%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDE-SDDLDVVSWNSMINGYVRNGEILE 60
           + K+  A+ V V N+L+  YS CG V  A+ VF+   ++ ++VSW SM+     +G   E
Sbjct: 295 IEKSGLAWIVSVNNALLDTYSKCGNVLMAQLVFERIMNERNIVSWTSMMAALAMHGHGEE 354

Query: 61  GLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMP-----KRSLVSWVVLI 111
            + +F KM +     +++++ S+L      G V+  C  F++M      + S+  +  ++
Sbjct: 355 AIGIFHKMEESGIRPDEIAFISLLYACSHAGLVEQGCEYFDKMKGMYNIEPSIEHYGCMV 414

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAIL-VSLLSACAQLG 153
             + + G+ ++A     +M      P +AI+  +LL AC+  G
Sbjct: 415 DLYGRAGQLQKAYEFVCQMPI----PCTAIIWRTLLGACSMHG 453


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 201/475 (42%), Positives = 314/475 (66%)

Query: 37  SDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVF 96
           ++ + V +  ++++ Y + G +    +LF+ + Q+  VSW +++ G +R   +++A  +F
Sbjct: 257 NEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALF 316

Query: 97  NQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALD 156
           +    R ++ W  ++S +AQ     +A  LF +M++  + P    +VSLLS CA  GALD
Sbjct: 317 DSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALD 376

Query: 157 YGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLA 216
            G WV+SYI K+ +++D IL  AL+DMYAKCG I+ A ++F     +D+  + + I G A
Sbjct: 377 LGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFA 436

Query: 217 MNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPEL 276
           M+G+  EA ++F  M+ +G+ P+ I++I +L ACSH G V +G   F  M    G+ P++
Sbjct: 437 MHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQI 496

Query: 277 DHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIE 336
           +HY CMVDLLGRAGLL+EA   I SMP+KP+ ++WG L+ ACR+H+N ++G+     L+E
Sbjct: 497 EHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLE 556

Query: 337 SDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDR 396
            +  + G  +L+SNIY    +  +A  VRKTM+   +K+ PG S+IE++G VHEFL GD+
Sbjct: 557 IEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQ 616

Query: 397 SHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICT 456
           SH + + I +   E+ +K+   GY  +T +V+ +I+EEEKET + YHSEKLA+AFGLI T
Sbjct: 617 SHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLIST 676

Query: 457 KPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            P + IRIVKN+R+C+DCH+A KL+SK++ R I +RDR  +HHF +G CSC +YW
Sbjct: 677 APSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDYW 731



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 110/242 (45%), Gaps = 16/242 (6%)

Query: 107 WVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQ 166
           W  +I+ + +  +P+ AL ++ +++ +D E ++ +  S+L AC Q+     G  ++ ++ 
Sbjct: 92  WNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVL 151

Query: 167 KKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFE 226
           KK +  D  +  AL+ MY +C  ++ A  VF    ++DV ++++ I  L+ N     A E
Sbjct: 152 KKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALE 211

Query: 227 LFENMKSKGISPDSISYIAVL-----SACSHLGWVEKGFYYFHSMFDVHGIKPELDHYAC 281
           L   M    + P  ++ ++++     +A   +G     +   +S  +  G+         
Sbjct: 212 LIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTT----TA 267

Query: 282 MVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC-RVHRNAEMGQRIGNMLIESDQN 340
           ++D+  + G L  A      +  K   V W  ++  C R +R  E        L +S QN
Sbjct: 268 LLDMYAKCGHLGLARQLFNGLTQK-TVVSWTAMIAGCIRSNRLEE-----ARALFDSTQN 321

Query: 341 HD 342
            D
Sbjct: 322 RD 323


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 225/550 (40%), Positives = 328/550 (59%), Gaps = 39/550 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V K  F  DVFVK +++ FYS CG +RDA  VFD+    +VVSW  MI G +  G+  E
Sbjct: 129 LVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFRE 188

Query: 61  GLKLFDKMPQ---------------------------------------RNDVSWNSILG 81
            + LF  + +                                       RN     S++ 
Sbjct: 189 AVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSRNVFVATSLVD 248

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + GS+++A  VF+ M ++ +V W  +I G+A NG P+EA+ LF EM+ +++ P+   
Sbjct: 249 MYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYA 308

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           +V  LS+CA LGAL+ GNW    +  +    + +L  +LID YAKCGS++ A+ V+    
Sbjct: 309 MVGALSSCASLGALELGNWAKGLMNYEEFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMK 368

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
           +KD   + + I GLAM G    AF +F  M   GI P+  +++ +L  C+H G V+ G +
Sbjct: 369 EKDRVVFNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCTHAGLVDDGRH 428

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           YF+SM     + P ++HY CMVDLL RAG L+EA N I  MPMK + ++WG+LLG CR+H
Sbjct: 429 YFNSMSHDFSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMKANVIVWGSLLGGCRLH 488

Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
           R  ++ + +   LIE +  + G Y+LLSNIY  + + + AE++R T+ ++ +++ PG S 
Sbjct: 489 RETQLAEHVLKQLIELEPWNSGHYVLLSNIYSASRRWDEAEKIRSTVNEKGMQKLPGYSW 548

Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIG 441
           +E+DGVVHEFL GD SH  +Q+IY+  E + K +K  GYN  T  V+FD+EEEEKE  +G
Sbjct: 549 VEVDGVVHEFLVGDTSHPLSQKIYEKLESLFKDLKEAGYNPTTEFVLFDVEEEEKEHFLG 608

Query: 442 YHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
            HSEKLA+AF LI T    VIR+VKN+R+C DCH A+K +SKV  R+I IRD   +H F 
Sbjct: 609 CHSEKLAVAFALISTGAKYVIRVVKNLRVCGDCHEAIKHISKVTGREIVIRDNNRFHCFS 668

Query: 502 DGSCSCLEYW 511
           DG+CSC +YW
Sbjct: 669 DGACSCRDYW 678



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 102/222 (45%), Gaps = 3/222 (1%)

Query: 95  VFNQMPKRS-LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153
           VF++ P  S    +  +I G     R   A+ L+  M    + P+S     +L ACA+L 
Sbjct: 59  VFHKTPTNSNTFLYNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLN 118

Query: 154 ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIF 213
               G  ++S + K     D  +   ++  Y+KCG +  A +VF     K+V ++T  I 
Sbjct: 119 LFHLGVMIHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMIC 178

Query: 214 GLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIK 273
           G    G   EA +LF  +   G+ PD    + VL AC+ LG +E G +    M +  G+ 
Sbjct: 179 GCIEFGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMREC-GLS 237

Query: 274 PELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
             +     +VD+  + G +EEA  F+    ++ D V W  ++
Sbjct: 238 RNVFVATSLVDMYTKCGSMEEAR-FVFDGMVEKDIVCWSAMI 278


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 229/555 (41%), Positives = 330/555 (59%), Gaps = 45/555 (8%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V   S   D     +LI  Y   G V DAR +FDE    DVVSWN+MI GYV++G   E
Sbjct: 183 LVFDKSTLRDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEE 242

Query: 61  GLKLFDKMPQRNDVSWN-----SIL---------------GGLVR--------------- 85
            L  F +M Q  DVS N     S+L               G  VR               
Sbjct: 243 ALACFTRM-QEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALV 301

Query: 86  -----FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
                 G +  A ++F+ M  + ++ W  +I G+      +EAL LF  M   ++ PN  
Sbjct: 302 DMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDV 361

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI----LCAALIDMYAKCGSIDLAMQV 196
             +++L ACA LGALD G WV++YI K      ++    L  ++I MYAKCG +++A QV
Sbjct: 362 TFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQV 421

Query: 197 FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWV 256
           F S G + ++++ + I GLAMNGH+  A  LFE M ++G  PD I+++ VLSAC+  G+V
Sbjct: 422 FRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFV 481

Query: 257 EKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLG 316
           E G  YF SM   +GI P+L HY CM+DLL R+G  +EA+  + +M M+PD  IWG+LL 
Sbjct: 482 ELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLN 541

Query: 317 ACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRA 376
           ACR+H   E G+ +   L E +  + G Y+LLSNIY    + ++  ++R  +  + +K+ 
Sbjct: 542 ACRIHGQVEFGEYVAERLFELEPENSGAYVLLSNIYAGAGRWDDVAKIRTKLNDKGMKKV 601

Query: 377 PGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEK 436
           PGC+ IE+DGVVHEFL GD+ H +++ I++  +E+ + ++  G+  +T  V++D++EE K
Sbjct: 602 PGCTSIEIDGVVHEFLVGDKFHPQSENIFRMLDEVDRLLEETGFVPDTSEVLYDMDEEWK 661

Query: 437 ETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKH 496
           E  +  HSEKLA+AFGLI TKPGS IRIVKN+R+C +CHSA KL+SK+F R+I  RDR  
Sbjct: 662 EGALTQHSEKLAIAFGLISTKPGSTIRIVKNLRVCRNCHSATKLISKIFNREIIARDRNR 721

Query: 497 YHHFEDGSCSCLEYW 511
           +HHF+DG CSC + W
Sbjct: 722 FHHFKDGFCSCNDRW 736



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 104/254 (40%), Gaps = 35/254 (13%)

Query: 95  VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA 154
           + +Q P  ++  W  LI   +    P  +L LF +M    L PNS    SL  +CA+  A
Sbjct: 85  IHHQPP--NIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKA 142

Query: 155 LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS------------------------- 189
                 ++++  K  + L   +  +LI MY++ G                          
Sbjct: 143 THEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITG 202

Query: 190 ------IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISY 243
                 +D A ++F     KDV ++ + I G   +G   EA   F  M+   +SP+  + 
Sbjct: 203 YVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTM 262

Query: 244 IAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP 303
           ++VLSAC HL  +E G  +  S     G    L     +VD+  + G +  A      M 
Sbjct: 263 VSVLSACGHLRSLELG-KWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGME 321

Query: 304 MKPDNVIWGTLLGA 317
            K D ++W T++G 
Sbjct: 322 DK-DVILWNTMIGG 334


>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
          Length = 635

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 207/467 (44%), Positives = 307/467 (65%), Gaps = 1/467 (0%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
            +++  Y R G+      LFD+MP  + V   ++L    + G++DDA  +F+ MP +  +
Sbjct: 169 TALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFI 228

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
            W  +I G+ Q+GRP EAL LFR M    ++P+   ++  LSA AQLG  + G W++SY+
Sbjct: 229 CWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYV 288

Query: 166 QK-KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEA 224
           +  + ++L++ +  ALIDMY KCGS++ A+ VF+S GDKD+  + + I G AM+G S +A
Sbjct: 289 KNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKA 348

Query: 225 FELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVD 284
            E+F  ++S+G+ P  I++I +L+ACSH G V++G  +F SM + + I P+++HY CMVD
Sbjct: 349 LEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVD 408

Query: 285 LLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGR 344
           LLGRAGL+EEA + + SM + PD V+W +LL ACR+H+N  +GQ+I + L+     + G 
Sbjct: 409 LLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGM 468

Query: 345 YILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEI 404
           YILLSNIY      E    VR  M+   I++ PGCS IE+   V+EF+AGD SH +T EI
Sbjct: 469 YILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYEFVAGDMSHPRTDEI 528

Query: 405 YQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRI 464
           Y   E++   +K  G+  +T  V+ D++E  KE  +  HSEKLA+AFGLI T PG  I+I
Sbjct: 529 YAMLEKMNGIVKEQGHVPQTELVLHDLDEVTKEKALAVHSEKLAVAFGLISTAPGETIKI 588

Query: 465 VKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           VKN+R C+DCH+ +KL+SK+  RKI  RDR  +HHF DGSC+C +YW
Sbjct: 589 VKNLRACADCHAVLKLISKITGRKIVFRDRNRFHHFVDGSCTCGDYW 635



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 107/267 (40%), Gaps = 35/267 (13%)

Query: 89  VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148
           +D    +    P  + V +   I   +  G    ALAL  EM    L P S  L S L A
Sbjct: 83  LDLTVTLLRLTPDPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPA 142

Query: 149 CAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDM------------------------- 183
           C  L     G  +++Y  K  +  DS +  AL+ M                         
Sbjct: 143 CHGLA---LGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPV 199

Query: 184 ------YAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGIS 237
                 YAK G++D A ++F     KD   + + I G   +G   EA  LF  M   G+ 
Sbjct: 200 TAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVD 259

Query: 238 PDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAEN 297
           PD ++ I  LSA + LG  E G +    + +   ++        ++D+  + G LE+A +
Sbjct: 260 PDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVS 319

Query: 298 FIASMPMKPDNVIWGTLLGACRVHRNA 324
              S+  K D V+W  ++    +H ++
Sbjct: 320 VFNSIGDK-DIVVWNAMINGYAMHGDS 345


>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
          Length = 634

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 207/467 (44%), Positives = 307/467 (65%), Gaps = 1/467 (0%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
            +++  Y R G+      LFD+MP  + V   ++L    + G++DDA  +F+ MP +  +
Sbjct: 168 TALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFI 227

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
            W  +I G+ Q+GRP EAL LFR M    ++P+   ++  LSA AQLG  + G W++SY+
Sbjct: 228 CWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYV 287

Query: 166 QK-KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEA 224
           +  + ++L++ +  ALIDMY KCGS++ A+ VF+S GDKD+  + + I G AM+G S +A
Sbjct: 288 KNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKA 347

Query: 225 FELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVD 284
            E+F  ++S+G+ P  I++I +L+ACSH G V++G  +F SM + + I P+++HY CMVD
Sbjct: 348 LEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVD 407

Query: 285 LLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGR 344
           LLGRAGL+EEA + + SM + PD V+W +LL ACR+H+N  +GQ+I + L+     + G 
Sbjct: 408 LLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGM 467

Query: 345 YILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEI 404
           YILLSNIY      E    VR  M+   I++ PGCS IE+   V+EF+AGD SH +T EI
Sbjct: 468 YILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYEFVAGDMSHPRTDEI 527

Query: 405 YQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRI 464
           Y   E++   +K  G+  +T  V+ D++E  KE  +  HSEKLA+AFGLI T PG  I+I
Sbjct: 528 YAMLEKMNGIVKEQGHVPQTELVLHDLDEVTKEKALAVHSEKLAVAFGLISTAPGETIKI 587

Query: 465 VKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           VKN+R C+DCH+ +KL+SK+  RKI  RDR  +HHF DGSC+C +YW
Sbjct: 588 VKNLRACADCHAVLKLISKITGRKIVFRDRNRFHHFVDGSCTCGDYW 634



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 107/267 (40%), Gaps = 35/267 (13%)

Query: 89  VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148
           +D    +    P  + V +   I   +  G    ALAL  EM    L P S  L S L A
Sbjct: 82  LDLTVTLLRLTPDPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPA 141

Query: 149 CAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDM------------------------- 183
           C  L     G  +++Y  K  +  DS +  AL+ M                         
Sbjct: 142 CHGLA---LGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPV 198

Query: 184 ------YAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGIS 237
                 YAK G++D A ++F     KD   + + I G   +G   EA  LF  M   G+ 
Sbjct: 199 TAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVD 258

Query: 238 PDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAEN 297
           PD ++ I  LSA + LG  E G +    + +   ++        ++D+  + G LE+A +
Sbjct: 259 PDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVS 318

Query: 298 FIASMPMKPDNVIWGTLLGACRVHRNA 324
              S+  K D V+W  ++    +H ++
Sbjct: 319 VFNSIGDK-DIVVWNAMINGYAMHGDS 344


>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
 gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
          Length = 444

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 206/444 (46%), Positives = 302/444 (68%)

Query: 68  MPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALF 127
           MP+++ VS  +++    ++G +D+A  +F+ + +R  + W V+I G+AQ+G P E L LF
Sbjct: 1   MPEKSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLF 60

Query: 128 REMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC 187
           R+M +  + PN   ++++LSAC Q GAL+ G WV+SYI+   I ++  +  +LIDMY+KC
Sbjct: 61  RQMLNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKC 120

Query: 188 GSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVL 247
           GS++ A  VF    +KDV A+ S + G AM+G S +A  LF+ M   G  P  I++I VL
Sbjct: 121 GSLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVL 180

Query: 248 SACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPD 307
           +ACSH G V +G+ +F+SM D +GI+P+++HY CMV+LLGRAG LEEA   + +M +  D
Sbjct: 181 NACSHAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQD 240

Query: 308 NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKT 367
            V+WGTLLGACR+H N  +G++I   L+  +  + G Y+LLSNIY      E    VR  
Sbjct: 241 PVLWGTLLGACRLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRTL 300

Query: 368 MRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSV 427
           M++   ++ PGCS IE++  VHEFLAGD  H K++EIY+  EEI   +K +GY  +T  V
Sbjct: 301 MKESGFEKEPGCSSIEVNNKVHEFLAGDLRHPKSREIYEMLEEINGWLKTHGYTPQTDIV 360

Query: 428 MFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKR 487
           + D+E+ +KE  +G HSEKLALAFGLI TKPG+ I+IVKN+R+C+DCH+  KL+SK+  R
Sbjct: 361 LHDLEDAQKERSLGVHSEKLALAFGLITTKPGTTIKIVKNLRVCADCHAVTKLISKITGR 420

Query: 488 KISIRDRKHYHHFEDGSCSCLEYW 511
           K+ +RDR  +HHF +G CSC +YW
Sbjct: 421 KVVMRDRNRFHHFVNGLCSCGDYW 444



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 123/285 (43%), Gaps = 74/285 (25%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM----PQ 70
            ++I  Y+  G + +AR +FD  ++ D + WN MI+GY ++G   EGL LF +M     +
Sbjct: 10  TAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAKVR 69

Query: 71  RNDVS------------------W------NSILGGLVRF-----------GSVDDACRV 95
            N+V+                  W      N+ +G  VR            GS++DA  V
Sbjct: 70  PNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLV 129

Query: 96  FNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGAL 155
           F ++  + +V+W  ++ G+A +G  ++AL LF+EM  +  +P     + +L+AC+  G +
Sbjct: 130 FERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAGLV 189

Query: 156 DYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG-DKDVSAYTSAIFG 214
             G W + Y  K                                YG +  V  Y   +  
Sbjct: 190 SEG-WKFFYSMKD------------------------------EYGIEPKVEHYGCMVNL 218

Query: 215 LAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
           L   G+  EA+EL +NM+   I  D + +  +L AC   G +  G
Sbjct: 219 LGRAGYLEEAYELVKNME---IDQDPVLWGTLLGACRLHGNIALG 260



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 94/196 (47%), Gaps = 17/196 (8%)

Query: 5   NSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKL 64
           N    +V V  SLI  YS CG + DAR VF+   + DVV+WNSM+ GY  +G   + L+L
Sbjct: 101 NGIGINVRVGTSLIDMYSKCGSLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRL 160

Query: 65  FDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQM-------PKRSLVSWVVLISG 113
           F +M     Q  D+++  +L      G V +  + F  M       PK      +V + G
Sbjct: 161 FKEMCMIGYQPTDITFIGVLNACSHAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLG 220

Query: 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD 173
            A  G  +EA  L + M+ +D +P   +  +LL AC   G +  G  +  Y+  + +  +
Sbjct: 221 RA--GYLEEAYELVKNME-IDQDP--VLWGTLLGACRLHGNIALGEQIAEYLVSQNLA-N 274

Query: 174 SILCAALIDMYAKCGS 189
           S     L ++YA  G+
Sbjct: 275 SGTYVLLSNIYAAAGN 290


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/543 (42%), Positives = 335/543 (61%), Gaps = 32/543 (5%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEI-- 58
           +V+K  F  D FV +SL+  YS CG +   R VFD  +D DVVSWNS+I+GY R GEI  
Sbjct: 139 LVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGEIEL 198

Query: 59  -------------------LEGLK----------LFDKMPQRNDVSWNSILGGLVRFGSV 89
                              ++GL           +FD+MP RN VSWN+++ G ++ G  
Sbjct: 199 ALEMFEEMPEKDSFSWTILIDGLSKSGKLEAARDVFDRMPIRNSVSWNAMINGYMKAGDS 258

Query: 90  DDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
           + A  +F+QMP+RSLV+W  +I+G+ +N +  +AL LF  M   D+ PN   ++  +SA 
Sbjct: 259 NTAKELFDQMPERSLVTWNSMITGYERNKQFTKALKLFEVMLREDISPNYTTILGAVSAA 318

Query: 150 AQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYT 209
           + + +L  G WV+SYI K   K D +L   LI+MY+KCGS+  A++VF S   K +  +T
Sbjct: 319 SGMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIEMYSKCGSVKSALRVFRSIPKKKLGHWT 378

Query: 210 SAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDV 269
           S I GL M+G   +  ELF+ M   G+ P +I++I VL+ACSH G+ E    YF  M   
Sbjct: 379 SVIVGLGMHGLVEQTLELFDEMCRTGLKPHAITFIGVLNACSHAGFAEDAHRYFKMMTYD 438

Query: 270 HGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQR 329
           +GIKP ++HY C++D+L RAG LEEA++ I  MP+K + VIW +LL   R H N  MG+ 
Sbjct: 439 YGIKPSIEHYGCLIDVLCRAGHLEEAKDTIERMPIKANKVIWTSLLSGSRKHGNIRMGEY 498

Query: 330 IGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVH 389
               LI+   +  G Y++LSN+Y      E   +VR+ M+K+ +K+ PGCS IE  G +H
Sbjct: 499 AAQHLIDLAPDTTGCYVILSNMYAAAGLWEKVRQVREMMKKKGMKKDPGCSSIEHQGSIH 558

Query: 390 EFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEE-EKETVIGYHSEKLA 448
           EF+ GD+SH +T+EIY    E+ KK+   G+  +T  V+  +EE+ EKE  +  HSE+LA
Sbjct: 559 EFIVGDKSHPQTEEIYIKLCEMKKKLNVAGHIPDTTQVLLCLEEDNEKEAELETHSERLA 618

Query: 449 LAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCL 508
           +AFGL+  K GS IRI+KN+RIC+DCH+  KL+S ++ R+I IRD   +HHF+ GSCSC 
Sbjct: 619 IAFGLLNIKHGSPIRIIKNLRICNDCHAVTKLLSHIYNREIIIRDGSRFHHFKSGSCSCK 678

Query: 509 EYW 511
           ++W
Sbjct: 679 DFW 681



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 130/263 (49%), Gaps = 11/263 (4%)

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
           R  ++  A  +F+ + + +LVSW +LI  + +N R  +A+ALF ++   D  P+S  L  
Sbjct: 61  RINNLQYAHSLFDWIQEPTLVSWNLLIKCYIENQRSNDAIALFCKLLC-DFVPDSFTLPC 119

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           +L  CA+LGAL  G  ++  + K    +D  + ++L+ MY+KCG I+L  +VF    DKD
Sbjct: 120 VLKGCARLGALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKD 179

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           V ++ S I G A  G    A E+FE M  K    DS S+  ++   S  G +E       
Sbjct: 180 VVSWNSLIDGYARCGEIELALEMFEEMPEK----DSFSWTILIDGLSKSGKLEAA----R 231

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
            +FD   I+  +  +  M++   +AG    A+     MP +   V W +++     ++  
Sbjct: 232 DVFDRMPIRNSVS-WNAMINGYMKAGDSNTAKELFDQMPER-SLVTWNSMITGYERNKQF 289

Query: 325 EMGQRIGNMLIESDQNHDGRYIL 347
               ++  +++  D + +   IL
Sbjct: 290 TKALKLFEVMLREDISPNYTTIL 312



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 91/380 (23%), Positives = 151/380 (39%), Gaps = 87/380 (22%)

Query: 30  ARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLF-----DKMPQRNDVSWNSILGGLV 84
           A  +FD   +  +VSWN +I  Y+ N    + + LF     D +P  +  +   +L G  
Sbjct: 68  AHSLFDWIQEPTLVSWNLLIKCYIENQRSNDAIALFCKLLCDFVP--DSFTLPCVLKGCA 125

Query: 85  RFGSVDDA----------------------------------CR-VFNQMPKRSLVSWVV 109
           R G++ +                                   CR VF++M  + +VSW  
Sbjct: 126 RLGALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNS 185

Query: 110 LISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC 169
           LI G+A+ G  + AL +F EM     E +S     L+   ++ G L+    V+  +  + 
Sbjct: 186 LIDGYARCGEIELALEMFEEMP----EKDSFSWTILIDGLSKSGKLEAARDVFDRMPIR- 240

Query: 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFE 229
              +S+   A+I+ Y K G  + A ++F    ++ +  + S I G   N    +A +LFE
Sbjct: 241 ---NSVSWNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYERNKQFTKALKLFE 297

Query: 230 NMKSKGISPDSISYIAVLSACS---HLG---WVEKGFYYFHSMFDVHGI----------- 272
            M  + ISP+  + +  +SA S    LG   WV    Y   S F   G+           
Sbjct: 298 VMLREDISPNYTTILGAVSAASGMVSLGTGRWVHS--YIVKSGFKTDGVLGTLLIEMYSK 355

Query: 273 ---------------KPELDHYACMVDLLGRAGLLEEAENFIASM---PMKPDNVIWGTL 314
                          K +L H+  ++  LG  GL+E+       M    +KP  + +  +
Sbjct: 356 CGSVKSALRVFRSIPKKKLGHWTSVIVGLGMHGLVEQTLELFDEMCRTGLKPHAITFIGV 415

Query: 315 LGACRVHRNAEMGQRIGNML 334
           L AC     AE   R   M+
Sbjct: 416 LNACSHAGFAEDAHRYFKMM 435


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 218/550 (39%), Positives = 328/550 (59%), Gaps = 39/550 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + +K  F +D +V   LI  +S C  V  AR +F      D+VS+N++I+G+  NGE   
Sbjct: 229 LALKLGFHFDDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETEC 288

Query: 61  GLKLFDKMPQRNDVSWNSILGGLV------------------------------------ 84
            +K F ++        +S + GL+                                    
Sbjct: 289 AVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTT 348

Query: 85  ---RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              R   +D A ++F++  ++++ +W  +ISG+AQ+G  + A++LF+EM + +  PN   
Sbjct: 349 IYSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVT 408

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           + S+LSACAQLGAL +G  V+  I+ K ++ +  +  ALIDMYAKCG+I  A Q+F    
Sbjct: 409 ITSILSACAQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTS 468

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
           +K+   + + IFG  ++G+  EA +LF  M   G  P S+++++VL ACSH G V +G  
Sbjct: 469 EKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDE 528

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            FH+M + + I+P  +HYACMVD+LGRAG LE+A  FI  MP++P   +WGTLLGAC +H
Sbjct: 529 IFHAMVNKYRIEPLAEHYACMVDILGRAGQLEKALEFIRKMPVEPGPAVWGTLLGACMIH 588

Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
           ++  + +     L E D  + G Y+LLSNIY        A  VR+ ++KR + + PGC+L
Sbjct: 589 KDTNLARVASERLFELDPGNVGYYVLLSNIYSVERNFPKAASVREAVKKRNLSKTPGCTL 648

Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIG 441
           IE++G  H F+ GDRSH +T  IY   EE+  K++  GY  ET + + D+EEEEKE +  
Sbjct: 649 IEVNGTPHVFVCGDRSHSQTTSIYAKLEELTGKMREMGYQSETVTALHDVEEEEKELMFN 708

Query: 442 YHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
            HSEKLA+AFGLI T+PG+ IRI+KN+R+C DCH+A K +SK+ +R I +RD   +HHF+
Sbjct: 709 VHSEKLAIAFGLITTEPGTEIRIIKNLRVCLDCHAATKFISKITERVIVVRDANRFHHFK 768

Query: 502 DGSCSCLEYW 511
           DG CSC +YW
Sbjct: 769 DGICSCGDYW 778



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/301 (19%), Positives = 119/301 (39%), Gaps = 43/301 (14%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++N + +D+     L Q     G  R AR +F      D+  +N +I G+  + +    
Sbjct: 31  LIRNGYQHDLATVTKLTQKLFDVGATRHARALFFSVPKPDIFLFNVLIKGFSFSPDA-SS 89

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDD------------------------------ 91
           +  +  + +   +S ++         S DD                              
Sbjct: 90  ISFYTHLLKNTTLSPDNFTYAFAISASPDDNLGMCLHAHAVVDGFDSNLFVASALVDLYC 149

Query: 92  -------ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
                  A +VF++MP R  V W  +I+G  +N    +++ +F++M +  +  +S  + +
Sbjct: 150 KFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVAT 209

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           +L A A++  +  G  +     K     D  +   LI +++KC  +D A  +F      D
Sbjct: 210 VLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKCEDVDTARLLFGMIRKPD 269

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS-----HLGWVEKG 259
           + +Y + I G + NG +  A + F  +   G    S + + ++   S     HL    +G
Sbjct: 270 LVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQG 329

Query: 260 F 260
           F
Sbjct: 330 F 330


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 207/444 (46%), Positives = 303/444 (68%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N++I  Y + G+I+   KLFD+    + +SWNS++ G ++   VD+A  +F+ MP++ +V
Sbjct: 280 NALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVV 339

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           SW  +ISG+AQN    E LALF+EMQ    +P+   LVS++SACA+L AL+ G WV++YI
Sbjct: 340 SWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYI 399

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
           ++  + ++ IL   LIDMY KCG ++ A++VF+   +K +S + + I GLAMNG    + 
Sbjct: 400 KRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSL 459

Query: 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL 285
           ++F NMK   ++P+ I+++ VL AC H+G V++G ++F+SM   H I+P + HY CMVDL
Sbjct: 460 DMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDL 519

Query: 286 LGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRY 345
           LGRAG L+EAE  +  MPM PD   WG LLGAC+ H ++EMG+R+G  LIE   +HDG +
Sbjct: 520 LGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFH 579

Query: 346 ILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIY 405
           +LLSNIY    K ++  E+R  M K ++ + PGCS+IE +GV+HEFLAGD++H     I 
Sbjct: 580 VLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAIE 639

Query: 406 QFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIV 465
               E+  K+K  GY  +   V+ D++EEEKE+ +  HSEKLA+AFGLI   P + IRI+
Sbjct: 640 DMLVEMAMKLKLEGYTPDINEVLLDVDEEEKESTLFRHSEKLAIAFGLINISPPTPIRIM 699

Query: 466 KNIRICSDCHSAMKLVSKVFKRKI 489
           KN+RIC+DCH+A KL+SK F RKI
Sbjct: 700 KNLRICNDCHTAAKLISKAFCRKI 723



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 103/325 (31%), Positives = 171/325 (52%), Gaps = 32/325 (9%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K  F  DV+V+N+LI  +SVC  + DA  VF+ES  LD VSWNS++ GY+  G + E 
Sbjct: 104 VLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEA 163

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
             ++ +MP+R+ ++ NS++      G V +AC++F++M ++ +V+W  LI+ F QN   +
Sbjct: 164 KHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYE 223

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYS------------------ 163
           EA+  F  M  + +  +  + VS LSACA L  ++ G  ++S                  
Sbjct: 224 EAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALI 283

Query: 164 YIQKKC-------------IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
           Y+  KC               LD I   ++I  Y KC  +D A  +F S  +KDV +++S
Sbjct: 284 YMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSS 343

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I G A N    E   LF+ M+  G  PD  + ++V+SAC+ L  +E+G  + H+    +
Sbjct: 344 MISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQG-KWVHAYIKRN 402

Query: 271 GIKPELDHYACMVDLLGRAGLLEEA 295
           G+   +     ++D+  + G +E A
Sbjct: 403 GLTINVILGTTLIDMYMKCGCVETA 427



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 12/167 (7%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           +N    +V +  +LI  Y  CG V  A  VF    +  + +WN++I G   NG +   L 
Sbjct: 401 RNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLD 460

Query: 64  LFDKMPQ----RNDVSWNSILGGLVRFGSVDDACRVFNQM-----PKRSLVSWVVLISGF 114
           +F  M +     N++++  +LG     G VD+    F  M      + ++  +  ++   
Sbjct: 461 MFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLL 520

Query: 115 AQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161
            + G+ +EA  L   M    + P+ A   +LL AC + G  + G  V
Sbjct: 521 GRAGKLQEAEELLNRMP---MTPDVATWGALLGACKKHGDSEMGRRV 564


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 216/540 (40%), Positives = 329/540 (60%), Gaps = 39/540 (7%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ 70
           V    +L+  Y+ CG +  AR +F+      VVSW +MI G +R+  + EG KLF +M +
Sbjct: 232 VPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQE 291

Query: 71  RN----DVSWNSIL-----GGLVRFGS------------------------------VDD 91
            N    +++  S++      G ++ G                               + +
Sbjct: 292 ENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRN 351

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           A  +F+    R ++ W  ++S +AQ     +A  LF +M++  + P    +VSLLS CA 
Sbjct: 352 ARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAV 411

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSA 211
            GALD G WV+SYI K+ +++D IL  AL+DMYAKCG I+ A ++F     +D+  + + 
Sbjct: 412 AGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAI 471

Query: 212 IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG 271
           I G AM+G+  EA ++F  M+ +G+ P+ I++I +L ACSH G V +G   F  M    G
Sbjct: 472 ITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFG 531

Query: 272 IKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIG 331
           + P+++HY CMVDLLGRAGLL+EA   I SMP+KP+ ++WG L+ ACR+H+N ++G+   
Sbjct: 532 LVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAA 591

Query: 332 NMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEF 391
             L+E +  + G  +L+SNIY    +  +A  VRKTM+   +K+ PG S+IE++G VHEF
Sbjct: 592 TQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEF 651

Query: 392 LAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAF 451
           L GD+SH + + I +   E+ +K+   GY  +T +V+ +I+EEEKET + YHSEKLA+AF
Sbjct: 652 LMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAF 711

Query: 452 GLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           GLI T P + IRIVKN+R+C+DCH+A KL+SK++ R I +RDR  +HHF +G CSC +YW
Sbjct: 712 GLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDYW 771



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 167/365 (45%), Gaps = 43/365 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K     DVFV N+L+  Y  C  V  AR VFD+  + DVVSW++MI    RN E    
Sbjct: 120 VLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMA 179

Query: 62  LKLFDKM------PQ----------------------------RND-------VSWNSIL 80
           L+L  +M      P                             RN         +  ++L
Sbjct: 180 LELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALL 239

Query: 81  GGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
               + G +  A ++FN + ++++VSW  +I+G  ++ R +E   LF  MQ  ++ PN  
Sbjct: 240 DMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEI 299

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
            ++SL+  C   GAL  G  +++YI +    +   L  AL+DMY KC  I  A  +F S 
Sbjct: 300 TMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDST 359

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
            ++DV  +T+ +   A      +AF LF+ M++ G+ P  ++ +++LS C+  G ++ G 
Sbjct: 360 QNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLG- 418

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
            + HS  D   ++ +      +VD+  + G +  A        +  D  +W  ++    +
Sbjct: 419 KWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIE-AISRDICMWNAIITGFAM 477

Query: 321 HRNAE 325
           H   E
Sbjct: 478 HGYGE 482



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 79/166 (47%), Gaps = 17/166 (10%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           K     D  +  +L+  Y+ CG +  A  +F E+   D+  WN++I G+  +G   E L 
Sbjct: 427 KERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALD 486

Query: 64  LFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKR-SLVSWV----VLISGF 114
           +F +M ++    ND+++  +L      G V +  ++F +M     LV  +     ++   
Sbjct: 487 IFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLL 546

Query: 115 AQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC-----AQLGAL 155
            + G   EA  + +   S+ ++PN+ +  +L++AC      QLG L
Sbjct: 547 GRAGLLDEAHEMIK---SMPIKPNTIVWGALVAACRLHKNPQLGEL 589



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/192 (21%), Positives = 82/192 (42%), Gaps = 10/192 (5%)

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           S+L AC Q+     G  ++ ++ KK +  D  +  AL+ MY +C  ++ A  VF    ++
Sbjct: 99  SVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMER 158

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVL-----SACSHLGWVEK 258
           DV ++++ I  L+ N     A EL   M    + P  ++ ++++     +A   +G    
Sbjct: 159 DVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMH 218

Query: 259 GFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
            +   +S  +  G+         ++D+  + G L  A      +  K   V W  ++  C
Sbjct: 219 AYVIRNSNNEHMGVPTT----TALLDMYAKCGHLGLARQLFNGLTQK-TVVSWTAMIAGC 273

Query: 319 RVHRNAEMGQRI 330
                 E G ++
Sbjct: 274 IRSNRLEEGTKL 285


>gi|296085273|emb|CBI29005.3| unnamed protein product [Vitis vinifera]
          Length = 587

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 210/427 (49%), Positives = 298/427 (69%), Gaps = 1/427 (0%)

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
           FG  DDA  +F++MP R +VSW  +++ +AQ G+P EALALF +M+++ ++P  A +VSL
Sbjct: 161 FGKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSL 220

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
           LSACA LGALD G  +++YI    I+++SI+  AL+DMYAKCG I LA QVF++   KDV
Sbjct: 221 LSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDV 280

Query: 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHS 265
            A+ + I G+A++GH  EA  LF+ MK  G+ P+ I+++A+LSACSH G V++G      
Sbjct: 281 LAWNTIIAGMAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDC 340

Query: 266 MFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAE 325
           M   +GI+P+++HY C++DLL RAGLLEEA   I +MPM+P+    G LLG CR+H N E
Sbjct: 341 MSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCALGALLGGCRIHGNFE 400

Query: 326 MGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELD 385
           +G+ +G  LI     H GRYILLSNIY    K ++A +VR  M+   I + PG S+IEL 
Sbjct: 401 LGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELK 460

Query: 386 GVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKN-YGYNVETRSVMFDIEEEEKETVIGYHS 444
           G+VH F+AGD SH ++ +IY+   EI  ++K+  G++ +T  V+ D+EEE+KE  +  HS
Sbjct: 461 GMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGHSADTGDVLLDMEEEDKEHALPVHS 520

Query: 445 EKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGS 504
           EKLA+A+GL+       IRIVKN+R+C DCH   KL+SKV+ R+I +RDR  +HHFEDG 
Sbjct: 521 EKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVTKLISKVYGREIIVRDRNRFHHFEDGE 580

Query: 505 CSCLEYW 511
           CSCL++W
Sbjct: 581 CSCLDFW 587



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 106/232 (45%), Gaps = 44/232 (18%)

Query: 25  GRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM------PQR------- 71
           G+  DA  +F E    DVVSWNSM+  Y + G+  E L LFD+M      P         
Sbjct: 162 GKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLL 221

Query: 72  ---------------------NDVSWNSILGGLV-----RFGSVDDACRVFNQMPKRSLV 105
                                N +  NSI+G  +     + G +  A +VFN M  + ++
Sbjct: 222 SACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVL 281

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           +W  +I+G A +G  KEA  LF+EM+   +EPN    V++LSAC+  G +D G  +   +
Sbjct: 282 AWNTIIAGMAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCM 341

Query: 166 QKKC---IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFG 214
                   K++   C  +ID+ A+ G ++ AM++  +   +       A+ G
Sbjct: 342 SSSYGIEPKVEHYGC--VIDLLARAGLLEEAMELIGTMPMEPNPCALGALLG 391



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 83/168 (49%), Gaps = 16/168 (9%)

Query: 5   NSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKL 64
           N    +  V  +L+  Y+ CG++  A  VF+  +  DV++WN++I G   +G + E  +L
Sbjct: 243 NRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQRL 302

Query: 65  FDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQM-------PKRSLVSWVVLISG 113
           F +M     + ND+++ ++L      G VD+  ++ + M       PK  +  +  +I  
Sbjct: 303 FKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPK--VEHYGCVIDL 360

Query: 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161
            A+ G  +EA+ L   + ++ +EPN   L +LL  C   G  + G  V
Sbjct: 361 LARAGLLEEAMEL---IGTMPMEPNPCALGALLGGCRIHGNFELGEMV 405


>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1182

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 233/511 (45%), Positives = 318/511 (62%), Gaps = 34/511 (6%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           VK     +VFV N+LI  +   GRV DAR VFD + D D  SWN+MI  YV +G ++   
Sbjct: 305 VKVGLDGNVFVVNALIGMFGKWGRVEDARNVFDSAVDRDFYSWNTMIGAYVGSGNMVLAK 364

Query: 63  KLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKE 122
           +LFD+M +R+ VSW++I+ G V+ G                                  E
Sbjct: 365 ELFDEMHERDVVSWSTIIAGYVQVGCF-------------------------------ME 393

Query: 123 ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182
           AL  F +M   +++PN   +VS L+AC+ L ALD G W++ YI++  IK++  L A+LID
Sbjct: 394 ALDFFHKMLQSEVKPNEYTMVSALAACSNLVALDQGKWIHVYIRRDNIKMNDRLLASLID 453

Query: 183 MYAKCGSIDLAMQVFHSYG-DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
           MYAKCG ID A  VFH +   + V  + + I G AM+G   EA  +FE MK + +SP+ +
Sbjct: 454 MYAKCGEIDSASSVFHEHKVKRKVWPWNAMIGGFAMHGKPEEAINVFEKMKVEKVSPNKV 513

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
           ++IA+L+ACSH   V++G  YF  M   +GI PE++HY CMVDLL R+G L+++E  I S
Sbjct: 514 TFIALLNACSHGYMVKEGKSYFELMASDYGINPEIEHYGCMVDLLSRSGHLKDSEEMILS 573

Query: 302 MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361
           MPM PD  IWG LL ACR++++ E G RIG ++ E D NH G  +LL NIY  + +   A
Sbjct: 574 MPMAPDVAIWGALLNACRIYKDMERGYRIGRIIKEIDPNHIGCNVLLGNIYSTSGRWNEA 633

Query: 362 EEVR-KTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGY 420
             VR K       K+ PG S IEL+GV HEFL GDRSH +++EIY F +E++ K+K  GY
Sbjct: 634 RMVREKNEINSDRKKIPGFSSIELNGVFHEFLVGDRSHPQSREIYSFLDEMISKLKIAGY 693

Query: 421 NVETRSVMFDI-EEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMK 479
             E   V+ D  +EE+KET +  HSEKLA+AFGL+ T PG+ IRIVKN+R+C DCH A K
Sbjct: 694 VPELGEVLLDFDDEEDKETALSVHSEKLAIAFGLMNTAPGTPIRIVKNLRVCGDCHQATK 753

Query: 480 LVSKVFKRKISIRDRKHYHHFEDGSCSCLEY 510
            +SKV+ R I +RDR  YHHF+DG CSC +Y
Sbjct: 754 FISKVYDRVIIVRDRMRYHHFKDGICSCKDY 784



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 58/275 (21%), Positives = 113/275 (41%), Gaps = 34/275 (12%)

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK-EALALFREM-QSLDLEPNSAI 141
           V   S+  A ++F+Q+P+  L  +  +I   + +     +++A+FR + +     PN   
Sbjct: 221 VALASLTYAHKLFDQIPQPDLFIYNTMIKSHSMSPHSYLDSIAVFRSLIRDSGYFPNRYS 280

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
            V    AC     +  G  V+++  K  +  +  +  ALI M+ K G ++ A  VF S  
Sbjct: 281 FVFAFGACGNGMCVREGEQVFTHAVKVGLDGNVFVVNALIGMFGKWGRVEDARNVFDSAV 340

Query: 202 D-------------------------------KDVSAYTSAIFGLAMNGHSIEAFELFEN 230
           D                               +DV ++++ I G    G  +EA + F  
Sbjct: 341 DRDFYSWNTMIGAYVGSGNMVLAKELFDEMHERDVVSWSTIIAGYVQVGCFMEALDFFHK 400

Query: 231 MKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAG 290
           M    + P+  + ++ L+ACS+L  +++G  + H       IK      A ++D+  + G
Sbjct: 401 MLQSEVKPNEYTMVSALAACSNLVALDQG-KWIHVYIRRDNIKMNDRLLASLIDMYAKCG 459

Query: 291 LLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAE 325
            ++ A +      +K     W  ++G   +H   E
Sbjct: 460 EIDSASSVFHEHKVKRKVWPWNAMIGGFAMHGKPE 494


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 217/533 (40%), Positives = 323/533 (60%), Gaps = 31/533 (5%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DV   N++I  Y+  G + +AR +FDES   DV +W +M++GY++N  + E  +LFD+MP
Sbjct: 244 DVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELFDRMP 303

Query: 70  QRNDVSWNSILGGLVR-------------------------------FGSVDDACRVFNQ 98
           +RN+VSWN++L G V+                                G + +A  +F++
Sbjct: 304 ERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDK 363

Query: 99  MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
           MPKR  VSW  +I+G++Q+G   EAL LF  M+      N +   S LS CA + AL+ G
Sbjct: 364 MPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELG 423

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
             ++  + K   +    +  AL+ MY KCGSI+ A  +F     KD+ ++ + I G + +
Sbjct: 424 KQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRH 483

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDH 278
           G   EA   FE+MK +G+ PD  + +AVLSACSH G V+KG  YFH+M   +G++P   H
Sbjct: 484 GFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQH 543

Query: 279 YACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338
           YACMVDLLGRAGLLEEA N + +MP +PD  IWGTLLGA RVH N E+ +   + +   +
Sbjct: 544 YACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAME 603

Query: 339 QNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSH 398
             + G Y+LLSN+Y  + +  +  ++R  MR + +K+ PG S IE+    H F  GD  H
Sbjct: 604 PENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFH 663

Query: 399 EKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKP 458
            +  EI+ F E++  ++K  GY  +T  V+ D+EEEEKE ++ YHSE+LA+A+G++    
Sbjct: 664 PEKDEIFAFLEDLDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSS 723

Query: 459 GSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           G  IR++KN+R+C DCH+A+K ++KV  R I +RD   +HHF+DGSCSC +YW
Sbjct: 724 GRPIRVIKNLRVCEDCHNAIKYMAKVTGRLIILRDNNRFHHFKDGSCSCGDYW 776



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/303 (31%), Positives = 154/303 (50%), Gaps = 18/303 (5%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDV 74
           N++I  Y   G    AR +FDE  + D+VSWN MI GYVRN  + +  +LF++MP+R+  
Sbjct: 94  NAMISGYLRNGEFELARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVC 153

Query: 75  SWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD 134
           SWN+IL G  + G VDDA RVF++MP+++ VSW  L+S + QN + +EA  LF   ++  
Sbjct: 154 SWNTILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWA 213

Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
           L   + +L   +     + A  +    +  ++ +    D +    +I  YA+ G ID A 
Sbjct: 214 LVSWNCLLGGFVKKKKIVEARQF----FDSMKVR----DVVSWNTIITGYAQNGEIDEAR 265

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
           Q+F      DV  +T+ + G   N    EA ELF+ M  +    + +S+ A+L+      
Sbjct: 266 QLFDESPVHDVFTWTAMVSGYIQNRMVEEARELFDRMPER----NEVSWNAMLAGYVQGE 321

Query: 255 WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTL 314
            VE        +FDV   +  +  +  M+    + G + EA+N    MP K D V W  +
Sbjct: 322 RVEMA----KELFDVMPCR-NVSTWNTMITGYAQCGKISEAKNLFDKMP-KRDPVSWAAM 375

Query: 315 LGA 317
           +  
Sbjct: 376 IAG 378



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 12/156 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +VK  +    FV N+L+  Y  CG + +A  +F E    D+VSWN+MI GY R+G   E 
Sbjct: 430 LVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEA 489

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLIS 112
           L+ F+ M +     +D +  ++L      G VD   + F+ M +   V      +  ++ 
Sbjct: 490 LRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVD 549

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148
              + G  +EA  L   M+++  EP++AI  +LL A
Sbjct: 550 LLGRAGLLEEAHNL---MKNMPFEPDAAIWGTLLGA 582


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 215/548 (39%), Positives = 334/548 (60%), Gaps = 40/548 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           ++  FA  V +  +L   YS CG V  AR +FD  D   VVSWNSM++GYV+NGE  + +
Sbjct: 275 IRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAI 334

Query: 63  KLFDKMPQR--------------------------------------NDVS-WNSILGGL 83
            +F+KM +                                       +D+S  NS++   
Sbjct: 335 AVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMY 394

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
            +   VD A  +FN +  R+ VSW  +I G+AQNGR  EAL  F EM+SL ++P+S  +V
Sbjct: 395 SKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMV 454

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           S++ A A+L    +  W++  I + C+  +  +  AL+DMY+KCG+I +A ++F    D+
Sbjct: 455 SVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDR 514

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
            V  + + I G   +G    A +LF+ MK   + P+ I+Y++V+SACSH G V++G  +F
Sbjct: 515 HVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHF 574

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
            SM   +G++P +DHY  MVDLLGRAG ++EA +FI +MP+ P   ++G +LGAC++H+N
Sbjct: 575 KSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGACKIHKN 634

Query: 324 AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE 383
            E+G++    L E + +  G ++LL+NIY  T K     EVRKTM K+ +K+ PGCS++E
Sbjct: 635 IEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVE 694

Query: 384 LDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYH 443
           L   VH F +G  +H +++ IY F EE+V +IK  GY  +T +++ D+E++ +E ++  H
Sbjct: 695 LRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVPDT-NLILDVEDDVQEQLLNSH 753

Query: 444 SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
           SEKLA+AFGL+ T PG+ I + KN+R+C DCH+A K +S V  R+I +RD + +HHF++G
Sbjct: 754 SEKLAIAFGLLNTSPGTTIHVRKNLRVCGDCHNATKYISLVTGREIIVRDMQRFHHFKNG 813

Query: 504 SCSCLEYW 511
            CSC +YW
Sbjct: 814 ICSCGDYW 821



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 103/389 (26%), Positives = 183/389 (47%), Gaps = 72/389 (18%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++ NSFA +VF    ++  Y+ C ++ DA  +FD   + D+VSWN++I G+ +NG   + 
Sbjct: 173 LITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKA 232

Query: 62  LKLFDKM----------------PQRNDVSW----NSILGGLVRFG-------------- 87
           L+L  +M                P   DV       SI G  +R G              
Sbjct: 233 LELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADM 292

Query: 88  -----SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
                SV+ A  +F+ M ++++VSW  ++ G+ QNG P++A+A+F +M    ++P    +
Sbjct: 293 YSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTI 352

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           +  L ACA LG L+ G +V+ ++ +  +  D  +  +LI MY+KC  +D+A  +F++   
Sbjct: 353 MEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNG 412

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAV------LSACSHLGWV 256
           +   ++ + I G A NG   EA   F  MKS G+ PDS + ++V      LS   H  W+
Sbjct: 413 RTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWI 472

Query: 257 ---------EKGFYYFHSMFD-------VHGIKPELD--------HYACMVDLLGRAGLL 292
                    +K  +   ++ D       +H  +   D         +  M+D  G  GL 
Sbjct: 473 HGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLG 532

Query: 293 EEAENFIASM---PMKPDNVIWGTLLGAC 318
             A +    M    ++P+++ + +++ AC
Sbjct: 533 RAALDLFDKMKKGAVEPNDITYLSVISAC 561



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 108/231 (46%), Gaps = 2/231 (0%)

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
           ++GS+++A RVF  +  +    +  ++ G+A+N   + ALA    M+  D++P       
Sbjct: 93  KYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTY 152

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           LL  C     L  G  ++  +       +      +++MYAKC  ID A ++F    ++D
Sbjct: 153 LLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERD 212

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           + ++ + I G + NG + +A EL   M+ +G  PDSI+ + VL A + +G +  G    H
Sbjct: 213 LVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVG-KSIH 271

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
                 G    ++    + D+  + G +E A      M  K   V W +++
Sbjct: 272 GYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQK-TVVSWNSMM 321



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 12/158 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +++++    ++FV  +L+  YS CG +  AR +FD   D  V++WN+MI+GY  +G    
Sbjct: 475 LIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRA 534

Query: 61  GLKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPK-----RSLVSWVVLI 111
            L LFDKM     + ND+++ S++      G VD+  R F  M +      S+  +  ++
Sbjct: 535 ALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMV 594

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
               + GR KEA      M    + P   +  ++L AC
Sbjct: 595 DLLGRAGRIKEAWDFIENMP---ISPGITVYGAMLGAC 629


>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
 gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 622

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 215/511 (42%), Positives = 324/511 (63%), Gaps = 32/511 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +V+  F  DV+V+NSL+  Y+ CG +  A  +F +    DVVSW SM+ GY + G +   
Sbjct: 143 IVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVENA 202

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
            ++FD+MP RN  +W+                               ++I+G+A+N   +
Sbjct: 203 REMFDEMPHRNLFTWS-------------------------------IMINGYAKNNCFE 231

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
           +A+ LF  M+   +  N  ++VS++S+CA LGAL++G   Y Y+ K  + ++ IL  AL+
Sbjct: 232 KAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALV 291

Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
           DM+ +CG I+ A+ VF    + D  +++S I GLA++GH+ +A   F  M S G  P  +
Sbjct: 292 DMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDV 351

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
           ++ AVLSACSH G VEKG   + +M   HGI+P L+HY C+VD+LGRAG L EAENFI  
Sbjct: 352 TFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILK 411

Query: 302 MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361
           M +KP+  I G LLGAC++++N E+ +R+GNMLI+    H G Y+LLSNIY    + +  
Sbjct: 412 MHVKPNAPILGALLGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKI 471

Query: 362 EEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAG-DRSHEKTQEIYQFWEEIVKKIKNYGY 420
           E +R  M+++ +K+ PG SLIE+DG +++F  G D+ H +  +I + WEEI+ KI+  GY
Sbjct: 472 ESLRDMMKEKLVKKPPGWSLIEIDGKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGY 531

Query: 421 NVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKL 480
              T    FD++EEEKE+ I  HSEKLA+A+G++ TKPG+ IRIVKN+R+C DCH+  KL
Sbjct: 532 KGNTGDAFFDVDEEEKESSIHMHSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKL 591

Query: 481 VSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           +S+V+ R++ +RDR  +HHF +G CSC +YW
Sbjct: 592 ISEVYGRELIVRDRNRFHHFRNGVCSCRDYW 622



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 123/261 (47%), Gaps = 33/261 (12%)

Query: 95  VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA 154
           +F+Q+   +L  + +LI  F+    P +A   + +M    + P++     L+ A +++  
Sbjct: 73  IFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMEC 132

Query: 155 LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFG 214
           +  G   +S I +   + D  +  +L+ MYA CG I  A ++F   G +DV ++TS + G
Sbjct: 133 VLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAG 192

Query: 215 --------------------------LAMNGHSI-----EAFELFENMKSKGISPDSISY 243
                                     + +NG++      +A +LFE MK +G+  +    
Sbjct: 193 YCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVM 252

Query: 244 IAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP 303
           ++V+S+C+HLG +E G   +  +   H +   L     +VD+  R G +E+A +    +P
Sbjct: 253 VSVISSCAHLGALEFGERAYEYVVKSH-MTVNLILGTALVDMFWRCGDIEKAIHVFEGLP 311

Query: 304 MKPDNVIWGTLLGACRVHRNA 324
            + D++ W +++    VH +A
Sbjct: 312 -ETDSLSWSSIIKGLAVHGHA 331


>gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 215/508 (42%), Positives = 312/508 (61%), Gaps = 31/508 (6%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           ++  A D  V++  +  Y+  G V   R  F E    DVV   +M               
Sbjct: 152 QHGHATDPHVQSGAVSMYAAVGDVGAVRAAFAEIVSPDVVCVTAM--------------- 196

Query: 64  LFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEA 123
                           LG L   G VD A  +F+ MP+R  V+W  +++G+ + GR +EA
Sbjct: 197 ----------------LGALSAGGDVDTARELFDGMPQRDHVAWNAMLTGYVRVGRSREA 240

Query: 124 LALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDM 183
           L LF EMQ   +  +   LVS+L+ACAQ+GAL+ G WV+SY+  + +++   L  AL+DM
Sbjct: 241 LGLFDEMQKAGVAVSEVTLVSVLTACAQMGALERGMWVHSYVCSRGMRVSVTLGTALVDM 300

Query: 184 YAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISY 243
           Y+KCG + ++M+VF +  ++++  +TSA+ GLAMNG   E  ELF+ M+S G+ P+ +++
Sbjct: 301 YSKCGVVTMSMEVFETMRERNIYTWTSALSGLAMNGMGEECLELFKRMESAGMEPNGVTF 360

Query: 244 IAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP 303
           +AVL  CS  G VE+G   F SM D H ++P L+HY CMVDL GRAG L++A +FI SMP
Sbjct: 361 VAVLRGCSVAGLVEEGRACFDSMKDKHKVEPWLEHYGCMVDLYGRAGRLDDAVDFINSMP 420

Query: 304 MKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEE 363
           ++P   +WG LL A R+H N ++G+   + L E +  +D  ++LLSNIY E+   +   +
Sbjct: 421 VEPHEGVWGALLNASRIHNNVDLGKHAMHKLTEIESKNDAAHVLLSNIYAESHNWKGVSK 480

Query: 364 VRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVE 423
           VR  M+ + +K+ PGCS IE+DG VHEF  G +SH + ++I     E+  +++  GY   
Sbjct: 481 VRNMMKSKGVKKMPGCSAIEVDGKVHEFFVGSKSHPRYKDIQTMLAEMSHRLRLQGYAAN 540

Query: 424 TRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSK 483
           T+ V+FDIEEEEKE  I  HSEKLALAFGLI     +VIRIVKN+R+C DCH   KL+SK
Sbjct: 541 TKEVLFDIEEEEKEGAISLHSEKLALAFGLITLPEDTVIRIVKNLRVCKDCHDYTKLISK 600

Query: 484 VFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           VF R+I +RDR  +HHF+ G+CSC +YW
Sbjct: 601 VFDREIVMRDRNRFHHFKHGACSCRDYW 628


>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 211/439 (48%), Positives = 302/439 (68%), Gaps = 2/439 (0%)

Query: 75  SWNSILGGLVRFGSVDDACRVFNQMPKR--SLVSWVVLISGFAQNGRPKEALALFREMQS 132
           S N+++   V F S++ A RVF+ MP+R  + VSW  +I+ + Q+ R  EA ALF  M+ 
Sbjct: 131 SLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRL 190

Query: 133 LDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDL 192
            ++  +  +  S+LSAC  LGAL+ G W++ YI+K  I+LDS L   +IDMY KCG ++ 
Sbjct: 191 ENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEK 250

Query: 193 AMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSH 252
           A +VF+    K +S++   I GLAM+G    A ELF+ M+ + ++PD I+++ VLSAC+H
Sbjct: 251 ASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAH 310

Query: 253 LGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWG 312
            G VE+G +YF  M +V G+KP ++H+ CMVDLLGRAGLLEEA   I  MP+ PD  + G
Sbjct: 311 SGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLG 370

Query: 313 TLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRK 372
            L+GACR+H N E+G++IG  +IE + ++ GRY+LL+N+Y    + E+  +VRK M  R 
Sbjct: 371 ALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRG 430

Query: 373 IKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIE 432
           +K+APG S+IE +  V EF+AG R+H + +EIY   +EI++ I++ GY  +T  V+ DI+
Sbjct: 431 VKKAPGFSMIESESGVDEFIAGGRAHPQAKEIYAKLDEILETIRSIGYVPDTDGVLHDID 490

Query: 433 EEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIR 492
           EEEKE  + YHSEKLA+AFGL+ TKPG  +RI KN+RIC DCH A KL+SKV+ R+I IR
Sbjct: 491 EEEKENPLYYHSEKLAIAFGLLKTKPGETLRISKNLRICRDCHQASKLISKVYDREIIIR 550

Query: 493 DRKHYHHFEDGSCSCLEYW 511
           DR  +HHF  G CSC +YW
Sbjct: 551 DRNRFHHFRMGGCSCKDYW 569



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 113/255 (44%), Gaps = 42/255 (16%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDE--SDDLDVVSWNSMINGYVRNGEIL 59
           V+K  F  D F  N+LI  Y     +  AR VFD     D + VSWN+MI  YV++  + 
Sbjct: 120 VLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLH 179

Query: 60  EGLKLFDKMPQRNDV----------SWNSILGGL-------------------------- 83
           E   LFD+M   N V          S  + LG L                          
Sbjct: 180 EAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVI 239

Query: 84  ---VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
               + G ++ A  VFN++P++ + SW  +I G A +G+ + A+ LF+EM+   + P+  
Sbjct: 240 DMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGI 299

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKC-IKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
             V++LSACA  G ++ G   + Y+ +   +K        ++D+  + G ++ A ++ + 
Sbjct: 300 TFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINE 359

Query: 200 YGDKDVSAYTSAIFG 214
                 +    A+ G
Sbjct: 360 MPVNPDAGVLGALVG 374



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 99/216 (45%), Gaps = 4/216 (1%)

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK 171
           SG+ +    +  + ++  M    + PN      L+ AC    A++ G  +++++ K    
Sbjct: 67  SGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFG 126

Query: 172 LDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS--AYTSAIFGLAMNGHSIEAFELFE 229
            D      LI MY    S++ A +VF +   +D +  ++ + I     +    EAF LF+
Sbjct: 127 ADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFD 186

Query: 230 NMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRA 289
            M+ + +  D     ++LSAC+ LG +E+G  + H   +  GI+ +      ++D+  + 
Sbjct: 187 RMRLENVVLDKFVAASMLSACTGLGALEQG-KWIHGYIEKSGIELDSKLATTVIDMYCKC 245

Query: 290 GLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAE 325
           G LE+A      +P K  +  W  ++G   +H   E
Sbjct: 246 GCLEKASEVFNELPQKGISS-WNCMIGGLAMHGKGE 280



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 111/267 (41%), Gaps = 35/267 (13%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           + K+    D  +  ++I  Y  CG +  A  VF+E     + SWN MI G   +G+    
Sbjct: 223 IEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAA 282

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMP-----KRSLVSWVVLIS 112
           ++LF +M +     + +++ ++L      G V++    F  M      K  +  +  ++ 
Sbjct: 283 IELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVD 342

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKL 172
              + G  +EA  L  EM    + P++ +L +L+ AC   G  + G      I KK I+L
Sbjct: 343 LLGRAGLLEEARKLINEM---PVNPDAGVLGALVGACRIHGNTELGEQ----IGKKVIEL 395

Query: 173 D---SILCAALIDMYAKCGSIDLAMQVFHSYGDKDV------------SAYTSAIFGLAM 217
           +   S     L ++YA  G  +   +V     D+ V            S     I G   
Sbjct: 396 EPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIAGGRA 455

Query: 218 NGHSIEAF----ELFENMKSKGISPDS 240
           +  + E +    E+ E ++S G  PD+
Sbjct: 456 HPQAKEIYAKLDEILETIRSIGYVPDT 482


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 215/550 (39%), Positives = 325/550 (59%), Gaps = 39/550 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + +K  F    +V   L   YS CG +  AR +F +    D+VS+N+MI+GY  N E   
Sbjct: 232 LAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETES 291

Query: 61  GLKLFDKMPQRNDVSWNSILGGLV------------------------------------ 84
            ++LF ++    +   +S + GL+                                    
Sbjct: 292 SVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTT 351

Query: 85  ---RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              R   ++ A  +F++  ++SL SW  +ISG+AQNG  ++A++LF+EMQ  ++ PN   
Sbjct: 352 VYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVT 411

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           + S+LSACAQLGAL  G WV+  I ++  + +  +  ALIDMYAKCGSI  A ++F    
Sbjct: 412 VTSILSACAQLGALSLGKWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMP 471

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
           +K+   + + I G  ++G+  EA  LF  M    +SP  +++++VL ACSH G V +G  
Sbjct: 472 EKNAVTWNAMISGYGLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVREGDE 531

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            F SM   HG +P  +HYACMVDLLGRAG L++A +FI  MP++P   +WG LLGAC +H
Sbjct: 532 IFRSMVHDHGFEPLPEHYACMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLGACMIH 591

Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
           ++A + +   + L E D  + G Y+LLSNIY        A  VR  +++RK+ + PGC+L
Sbjct: 592 KDANLARLASDKLFELDPQNVGYYVLLSNIYSAGQNYPEAASVRGVVKRRKLAKTPGCTL 651

Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIG 441
           IE+   +H F +GD+SH +   IY   E++  K++  G+  ET + + D+EEEEKE ++ 
Sbjct: 652 IEVANTLHIFTSGDQSHPQATAIYAMLEKLTGKMREAGFQTETGTALHDVEEEEKELMVK 711

Query: 442 YHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
            HSEKLA+AFGLI ++PG+ IRI+KN+R+C DCH+A K +SK+ +R I +RD   +HHF+
Sbjct: 712 VHSEKLAIAFGLITSEPGTEIRIIKNLRVCLDCHNATKFISKITERVIVVRDANRFHHFK 771

Query: 502 DGSCSCLEYW 511
           DG CSC +YW
Sbjct: 772 DGICSCGDYW 781



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 91/403 (22%), Positives = 181/403 (44%), Gaps = 44/403 (10%)

Query: 7   FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFD 66
           F  D+FV ++++  Y    RV  AR VFD   + D V WN+M++G V+N    E + +F 
Sbjct: 137 FGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFG 196

Query: 67  KMPQR----NDVSWNSILGGLVRF-----------------------------------G 87
            M +     +  +  ++L G+                                      G
Sbjct: 197 DMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCG 256

Query: 88  SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLS 147
            ++ A  +F Q+ +  LVS+  +ISG+  N   + ++ LF+E+     + NS+ +V L+ 
Sbjct: 257 EIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIP 316

Query: 148 ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSA 207
                G L     ++ +  K  +  +S +  AL  +Y++   I+ A  +F    +K +++
Sbjct: 317 VFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLAS 376

Query: 208 YTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMF 267
           + + I G A NG + +A  LF+ M+   + P+ ++  ++LSAC+ LG +  G  + H + 
Sbjct: 377 WNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLG-KWVHDLI 435

Query: 268 DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMG 327
           +    +  +     ++D+  + G + EA+   + MP K + V W  ++    +H      
Sbjct: 436 NRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEK-NAVTWNAMISGYGLHGYGHEA 494

Query: 328 QRIGNMLIESDQNHDGRYILLSNIYVETLKG--ENAEEVRKTM 368
             + N ++ S  +  G    LS +Y  +  G     +E+ ++M
Sbjct: 495 LNLFNEMLHSRVSPTG-VTFLSVLYACSHAGLVREGDEIFRSM 536


>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 607

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 216/474 (45%), Positives = 308/474 (64%), Gaps = 3/474 (0%)

Query: 41  DVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMP 100
           D  + N++I+ Y   G + +  ++F  M   N VSW S++ G  ++G VD+A RVF  MP
Sbjct: 134 DTYALNNLIHVYFAFGSLDDARRVFCTMSDPNVVSWTSLVSGYSQWGLVDEAFRVFELMP 193

Query: 101 -KRSLVSWVVLISGFAQNGRPKEALALFREMQ-SLDLEPNSAILVSLLSACAQLGALDYG 158
            K++ VSW  +I+ F +  R +EA ALFR M+    +E +  +  ++LSAC  +GAL+ G
Sbjct: 194 CKKNSVSWNAMIACFVKGNRFREAFALFRRMRVEKKMELDRFVAATMLSACTGVGALEQG 253

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
            W++ Y++K  I LDS L   +IDMY KCG +D A  VF     K VS++   I G AM+
Sbjct: 254 MWIHKYVEKTGIVLDSKLATTIIDMYCKCGCLDKAFHVFCGLKVKRVSSWNCMIGGFAMH 313

Query: 219 GHSIEAFELFENMKSKG-ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELD 277
           G   +A  LF+ M+ +  ++PDSI+++ VL+AC+H G VE+G+YYF  M DVHGI P  +
Sbjct: 314 GKGEDAIRLFKEMEEEAMVAPDSITFVNVLTACAHSGLVEEGWYYFRYMVDVHGIDPTKE 373

Query: 278 HYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIES 337
           HY CMVDLL RAG LEEA+  I  MPM PD  + G LLGACR+H N E+G+ +GN +IE 
Sbjct: 374 HYGCMVDLLARAGRLEEAKKVIDEMPMSPDAAVLGALLGACRIHGNLELGEEVGNRVIEL 433

Query: 338 DQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRS 397
           D  + GRY++L N+Y    K E    VRK M  R +K+ PG S+IE++GVV+EF+AG R 
Sbjct: 434 DPENSGRYVILGNMYASCGKWEQVAGVRKLMDDRGVKKEPGFSMIEMEGVVNEFVAGGRD 493

Query: 398 HEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTK 457
           H   + IY    E+++ I+  G+  +T  V+ D+ EEE+E  + YHSEKLA+A+GL+ TK
Sbjct: 494 HPLAEAIYAKIYEMLESIRVVGFVPDTDGVLHDLVEEERENPLFYHSEKLAIAYGLLKTK 553

Query: 458 PGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            G  +R+ KN+R+C DCH A K++SKV+   I IRDR  +HHF +G CSC +YW
Sbjct: 554 RGETLRVTKNLRVCKDCHQASKMISKVYDCDIIIRDRSRFHHFSNGECSCKDYW 607



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/310 (20%), Positives = 120/310 (38%), Gaps = 68/310 (21%)

Query: 54  RNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISG 113
           ++G+I   LKLF  +P  +   +N++                                  
Sbjct: 48  KHGDINYALKLFTTLPNPDTFLYNTLFKAF------------------------------ 77

Query: 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD 173
           F+ +  P  +L  +  M    + PN+    SL+ AC      +    +++++ K     D
Sbjct: 78  FSLSQTPSLSLLFYSHMLQHCVTPNAFTFPSLIRACK---LEEEAKQLHAHVLKFGFGGD 134

Query: 174 SILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKS 233
           +     LI +Y   GS+D A +VF +  D +V ++TS + G +  G   EAF +FE M  
Sbjct: 135 TYALNNLIHVYFAFGSLDDARRVFCTMSDPNVVSWTSLVSGYSQWGLVDEAFRVFELMPC 194

Query: 234 KGISPDSISYIA---------------------------------VLSACSHLGWVEKGF 260
           K  S    + IA                                 +LSAC+ +G +E+G 
Sbjct: 195 KKNSVSWNAMIACFVKGNRFREAFALFRRMRVEKKMELDRFVAATMLSACTGVGALEQGM 254

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
            + H   +  GI  +      ++D+  + G L++A +    + +K  +  W  ++G   +
Sbjct: 255 -WIHKYVEKTGIVLDSKLATTIIDMYCKCGCLDKAFHVFCGLKVKRVSS-WNCMIGGFAM 312

Query: 321 HRNAEMGQRI 330
           H   E   R+
Sbjct: 313 HGKGEDAIRL 322


>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 216/505 (42%), Positives = 329/505 (65%), Gaps = 8/505 (1%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM- 68
           +V    +++  Y+    +  AR  FD   +  VVSWN+M++GY +NG   E L+LFD+M 
Sbjct: 104 NVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEML 163

Query: 69  -PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALF 127
              RN V+WN+++   +R G +D A ++FN MP R++V+W  +I+G+AQNG+   A+ LF
Sbjct: 164 GAYRNSVTWNAMISAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELF 223

Query: 128 REM-QSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAK 186
           +EM  +  L P+   +VS++SAC  LGAL+ GNWV  ++ +  IKL      A+I MY++
Sbjct: 224 KEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSR 283

Query: 187 CGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAV 246
           CGS++ A +VF     +DV +Y + I G A +GH +EA  L   MK  GI PD +++I V
Sbjct: 284 CGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGV 343

Query: 247 LSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKP 306
           L+ACSH G +E+G   F S+ D     P +DHYACMVDLLGR G LE+A+  +  MPM+P
Sbjct: 344 LTACSHAGLLEEGRKVFESIKD-----PAIDHYACMVDLLGRVGELEDAKRTMERMPMEP 398

Query: 307 DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRK 366
              ++G+LL A R+H+  E+G+   N L E + ++ G +ILLSNIY    + ++ E +R+
Sbjct: 399 HAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIRE 458

Query: 367 TMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRS 426
            M+K  +K+  G S +E  G +H+F+  DRSHE++ +IYQ   E+ KK++  GY  +   
Sbjct: 459 AMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKKMREAGYIADKSC 518

Query: 427 VMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFK 486
           V+ D+EEEEKE ++G HSEKLA+ + L+ ++ G+VIR+VKN+R+C DCH+A+K++SK+  
Sbjct: 519 VLRDVEEEEKEEIVGTHSEKLAICYALLVSEAGAVIRVVKNLRVCWDCHTAIKMISKLEG 578

Query: 487 RKISIRDRKHYHHFEDGSCSCLEYW 511
           R I +RD   +H F DG CSC +YW
Sbjct: 579 RVIIVRDNNRFHCFNDGLCSCKDYW 603



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 100/321 (31%), Positives = 160/321 (49%), Gaps = 57/321 (17%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K     D FV+N++I  Y        AR V D         WN+M++GY +     + 
Sbjct: 51  VLKLGHGSDAFVRNAVIDMY--------ARKVAD---------WNAMVSGYWKWESEGQA 93

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
             LFD MP+RN ++W +++ G  +   ++ A R F+ MP+RS+VSW  ++SG+AQNG  +
Sbjct: 94  QWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAE 153

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
           EAL LF EM                     LGA  Y N              S+   A+I
Sbjct: 154 EALRLFDEM---------------------LGA--YRN--------------SVTWNAMI 176

Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM-KSKGISPDS 240
             Y + G +D A ++F++   ++V  + S I G A NG S  A ELF+ M  +K ++PD 
Sbjct: 177 SAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDE 236

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
           ++ ++V+SAC HLG +E G +    + + + IK  +  +  M+ +  R G +E+A+    
Sbjct: 237 VTMVSVISACGHLGALELGNWVVRFLTE-NQIKLSISGHNAMIFMYSRCGSMEDAKRVFQ 295

Query: 301 SMPMKPDNVIWGTLLGACRVH 321
            M  + D V + TL+     H
Sbjct: 296 EMATR-DVVSYNTLISGFAAH 315


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 217/549 (39%), Positives = 327/549 (59%), Gaps = 39/549 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           + K     +  V  SL+  Y+ CG +  A+ +FD+  + +VV+W  +I GY + G++   
Sbjct: 223 IAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVA 282

Query: 62  LKLFDKMPQ----RNDVSWNSILGGLV--------------------------------- 84
           L+L +KM Q     N +++ SIL G                                   
Sbjct: 283 LELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITM 342

Query: 85  --RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G + +A ++F  +P R +V+W  +++G+AQ G   EA+ LFR MQ   ++P+    
Sbjct: 343 YCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTF 402

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S L++C+    L  G  ++  +      LD  L +AL+ MYAKCGS+D A  VF+   +
Sbjct: 403 TSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSE 462

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           ++V A+T+ I G A +G   EA E FE MK +GI PD +++ +VLSAC+H+G VE+G  +
Sbjct: 463 RNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKH 522

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F SM+  +GIKP ++HY+C VDLLGRAG LEEAEN I +MP +P   +WG LL ACR+H 
Sbjct: 523 FRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSACRIHS 582

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           + E G+R    +++ D + DG Y+ LSNIY    + E+AE+VR+ M KR + + PG S I
Sbjct: 583 DVERGERAAENVLKLDPDDDGAYVALSNIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWI 642

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E+DG VH F   D+SH + +EIY    ++ ++IK  GY  +TR V+ D++EE+K   +  
Sbjct: 643 EVDGKVHVFHVEDKSHPEAKEIYAELGKLTEQIKEQGYVPDTRFVLHDVDEEQKVQTLCS 702

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSE+LA+ +GL+ T PG+ IRIVKN+R+C DCH+A K +SKV  R+I  RD   +HHF D
Sbjct: 703 HSERLAITYGLMKTPPGTPIRIVKNLRVCGDCHTASKFISKVVGREIIARDAHRFHHFVD 762

Query: 503 GSCSCLEYW 511
           G CSC ++W
Sbjct: 763 GVCSCGDFW 771



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 173/359 (48%), Gaps = 41/359 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K+    + +++N+L+  Y+ CG + DAR VFD   D ++VSW +MI  +V   + LE 
Sbjct: 122 ILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEA 181

Query: 62  LKLFDKM---------------------PQRNDVSW------------------NSILGG 82
            K ++ M                     P+   V                     S++G 
Sbjct: 182 YKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGM 241

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G +  A  +F+++P++++V+W +LI+G+AQ G+   AL L  +MQ  ++ PN    
Sbjct: 242 YAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITY 301

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S+L  C    AL++G  V+ YI +     +  +  ALI MY KCG +  A ++F     
Sbjct: 302 TSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPH 361

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           +DV  +T+ + G A  G   EA +LF  M+ +GI PD +++ + L++CS   ++++G   
Sbjct: 362 RDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEG-KS 420

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            H      G   ++   + +V +  + G +++A      M  + + V W  ++  C  H
Sbjct: 421 IHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSER-NVVAWTAMITGCAQH 478



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 106/207 (51%), Gaps = 3/207 (1%)

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCI 170
           +S   + GR KEAL +   M        S +   LL  CA+L +L+ G  V++ I K  I
Sbjct: 68  VSILCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGI 127

Query: 171 KLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFEN 230
           + +  L   L+ MYAKCGS+  A +VF    D+++ ++T+ I        ++EA++ +E 
Sbjct: 128 QPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYET 187

Query: 231 MKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAG 290
           MK  G  PD ++++++L+A ++   ++ G    H      G++ E      +V +  + G
Sbjct: 188 MKLAGCKPDKVTFVSLLNAFTNPELLQVG-QKVHMEIAKAGLELEPRVGTSLVGMYAKCG 246

Query: 291 LLEEAENFIASMPMKPDNVIWGTLLGA 317
            + +A+     +P K  NV+  TLL A
Sbjct: 247 DISKAQVIFDKLPEK--NVVTWTLLIA 271


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 201/474 (42%), Positives = 312/474 (65%), Gaps = 3/474 (0%)

Query: 41  DVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMP 100
           D+   NSMI+ YV+ G +    K+FD+M +R+ VSW  ++    ++G ++ A  +F+ +P
Sbjct: 177 DLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLP 236

Query: 101 KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNW 160
            + +V+W  +++G+AQNGRPKEAL  F++MQ + +E +   L  ++SACAQLGA+ + NW
Sbjct: 237 SKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANW 296

Query: 161 VYSYIQKKCIKLDS--ILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
           +    ++         ++ +ALIDMY+KCGS D A +VF    +++V +Y+S I G AM+
Sbjct: 297 IRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMH 356

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDH 278
           G +  A +LF +M    I P+ +++I +LSACSH G VE+G   F  M    G+ P  DH
Sbjct: 357 GRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDH 416

Query: 279 YACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338
           YACMVDLLGRAG LEEA + + +MPM+P+  +WG LLGACR+H N ++ Q   N L + +
Sbjct: 417 YACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLE 476

Query: 339 QNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE-LDGVVHEFLAGDRS 397
            N  G YILLSNIY    + E   ++RK +R++  K+ PGCS  E  +G +H+F AGD +
Sbjct: 477 PNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDTT 536

Query: 398 HEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTK 457
           H ++ EI Q  ++++++++++GY     S  +D+ ++EKE ++  HSEKLALA+GL+CT+
Sbjct: 537 HPRSSEIRQALKQLIERLRSHGYKPNLGSAPYDLTDDEKERILMSHSEKLALAYGLLCTE 596

Query: 458 PGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            G  I+I+KNIRIC DCH+ M   S++  R+I +RD   +HHF +G+CSC  +W
Sbjct: 597 AGDTIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMRFHHFHNGTCSCGNFW 650



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 119/285 (41%), Gaps = 48/285 (16%)

Query: 58  ILEGLKLFDKMPQ------RNDVSWNS-ILGGLVRFGSVDD------ACRVFNQMPKRSL 104
           IL    LF ++ Q      RN +S  S +L  L+R  +  D         VF Q+   + 
Sbjct: 48  ILHDCTLFSQIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNP 107

Query: 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYS- 163
             W  +I G+A  G   E+   +  M+   + P S    +L  AC     +D G  V++ 
Sbjct: 108 FLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQ 167

Query: 164 YIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH------------------SYGD--- 202
            I       D  +  ++ID+Y KCG +  A +VF                    YGD   
Sbjct: 168 TILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMES 227

Query: 203 ----------KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSH 252
                     KD+ A+T+ + G A NG   EA E F+ M+  G+  D ++   V+SAC+ 
Sbjct: 228 ASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQ 287

Query: 253 LGWVEKGFYYFHSMFDVHGIKPELDHY--ACMVDLLGRAGLLEEA 295
           LG V K   +   + +  G  P  +    + ++D+  + G  +EA
Sbjct: 288 LGAV-KHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEA 331


>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Brachypodium distachyon]
          Length = 892

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 211/468 (45%), Positives = 304/468 (64%), Gaps = 2/468 (0%)

Query: 46  NSMINGYVRNGEILEGLKLFDKM-PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSL 104
            +++  Y R G+      LFD M P  + VS  ++L      G++DDA  +F+ +P +  
Sbjct: 425 TALLGMYARAGDATAARALFDDMLPDPHVVSVTAMLTCYADMGALDDARSLFDGLPTKDF 484

Query: 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSY 164
           V W  +I G+ Q+GRP EAL LFR M    +EP+   +V +LSA AQLG ++ G W++SY
Sbjct: 485 VCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSAVAQLGTVESGKWLHSY 544

Query: 165 IQ-KKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIE 223
           ++  + ++L   +  ALIDMY KCGS+  A+ VFH  GDKD+  + + I G AM+G S +
Sbjct: 545 VKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHGDSRK 604

Query: 224 AFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMV 283
           A E+F   + +G+ P  I++I +L+ACSH G VE+G  +F SM   +GI P+++HY CMV
Sbjct: 605 ALEMFVQSREQGLWPTDITFIGLLNACSHSGMVEEGREFFQSMEREYGIDPKIEHYGCMV 664

Query: 284 DLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDG 343
           DLLGRAGL++EA   + SM + PD V+W +LL ACR+H+N  +GQ+I + L+     + G
Sbjct: 665 DLLGRAGLIKEAFCLVQSMKITPDAVMWVSLLAACRLHKNMSLGQQIADYLVAKGLANSG 724

Query: 344 RYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQE 403
            YILLSNIY           VR  M+   I++ PGCS IE+D  V+EF+AGD SH +T E
Sbjct: 725 MYILLSNIYAAVGNWGEVARVRSMMKASGIQKEPGCSSIEIDREVYEFVAGDMSHPRTDE 784

Query: 404 IYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIR 463
           IY   +++   +K +G+  +T  V+ D++E  KE  +  HSEKLALAFGLI T+PG+ I+
Sbjct: 785 IYVMLDKMNGLVKEHGHVPQTELVLHDLDEATKEKALAVHSEKLALAFGLISTQPGATIK 844

Query: 464 IVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           IVKN+R CSDCH+ +KL+S++  RKI  RDR  +HHF DGSCSC +YW
Sbjct: 845 IVKNLRACSDCHAVLKLISRITGRKIVFRDRNRFHHFVDGSCSCGDYW 892



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 120/277 (43%), Gaps = 75/277 (27%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM----PQ 70
            +++  Y+  G + DAR +FD     D V WN+MI+GY ++G   E L+LF +M     +
Sbjct: 457 TAMLTCYADMGALDDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVE 516

Query: 71  RNDVSWNSILGGLVRFGSVD------------------------------------DACR 94
            ++V+   +L  + + G+V+                                    DA  
Sbjct: 517 PDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVD 576

Query: 95  VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA 154
           VF+ +  + +V W  +I+G+A +G  ++AL +F + +   L P     + LL+AC+  G 
Sbjct: 577 VFHGIGDKDIVVWNAMINGYAMHGDSRKALEMFVQSREQGLWPTDITFIGLLNACSHSGM 636

Query: 155 LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG-DKDVSAYTSAIF 213
           ++ G   +  ++++                               YG D  +  Y   + 
Sbjct: 637 VEEGREFFQSMERE-------------------------------YGIDPKIEHYGCMVD 665

Query: 214 GLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250
            L   G   EAF L ++MK   I+PD++ ++++L+AC
Sbjct: 666 LLGRAGLIKEAFCLVQSMK---ITPDAVMWVSLLAAC 699



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 61/271 (22%), Positives = 109/271 (40%), Gaps = 36/271 (13%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           G +D +  +  +    + + +   I   +  G    ALAL  +M +  L P +  L + L
Sbjct: 337 GRLDLSLALLRRTRDPTAIFYTSAIHAHSSRGHRLPALALLSDMLAQGLLPTAHTLSASL 396

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC------------------- 187
            AC  L     G  ++ Y  K  +  DS +  AL+ MYA+                    
Sbjct: 397 PACRGLSP---GRALHGYAFKLALAGDSYVATALLGMYARAGDATAARALFDDMLPDPHV 453

Query: 188 -------------GSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK 234
                        G++D A  +F     KD   + + I G   +G   EA  LF  M   
Sbjct: 454 VSVTAMLTCYADMGALDDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLGS 513

Query: 235 GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEE 294
           G+ PD ++ + VLSA + LG VE G +    + +   ++  +     ++D+  + G L +
Sbjct: 514 GVEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRRVQLSVRVGTALIDMYCKCGSLGD 573

Query: 295 AENFIASMPMKPDNVIWGTLLGACRVHRNAE 325
           A +    +  K D V+W  ++    +H ++ 
Sbjct: 574 AVDVFHGIGDK-DIVVWNAMINGYAMHGDSR 603



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 96/198 (48%), Gaps = 15/198 (7%)

Query: 3   VKNS--FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           VKNS      V V  +LI  Y  CG + DA  VF    D D+V WN+MINGY  +G+  +
Sbjct: 545 VKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHGDSRK 604

Query: 61  GLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLI 111
            L++F +  ++     D+++  +L      G V++    F  M +       +  +  ++
Sbjct: 605 ALEMFVQSREQGLWPTDITFIGLLNACSHSGMVEEGREFFQSMEREYGIDPKIEHYGCMV 664

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK 171
               + G  KEA  L   +QS+ + P++ + VSLL+AC     +  G  +  Y+  K + 
Sbjct: 665 DLLGRAGLIKEAFCL---VQSMKITPDAVMWVSLLAACRLHKNMSLGQQIADYLVAKGLA 721

Query: 172 LDSILCAALIDMYAKCGS 189
            +S +   L ++YA  G+
Sbjct: 722 -NSGMYILLSNIYAAVGN 738



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 50/233 (21%), Positives = 86/233 (36%), Gaps = 33/233 (14%)

Query: 184 YAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISY 243
           YA  G +DL++ +     D     YTSAI   +  GH + A  L  +M ++G+ P + + 
Sbjct: 333 YAASGRLDLSLALLRRTRDPTAIFYTSAIHAHSSRGHRLPALALLSDMLAQGLLPTAHTL 392

Query: 244 IAVLSACSHL--GWVEKGFYY--------------------------FHSMFDVHGIKPE 275
            A L AC  L  G    G+ +                            ++FD     P 
Sbjct: 393 SASLPACRGLSPGRALHGYAFKLALAGDSYVATALLGMYARAGDATAARALFDDMLPDPH 452

Query: 276 LDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLI 335
           +     M+      G L++A +    +P K D V W  ++     H       R+   ++
Sbjct: 453 VVSVTAMLTCYADMGALDDARSLFDGLPTK-DFVCWNAMIDGYTQHGRPNEALRLFRRML 511

Query: 336 ESDQNHDGRYILLSNIYVETL----KGENAEEVRKTMRKRKIKRAPGCSLIEL 384
            S    D   ++L    V  L     G+      K  R+ ++    G +LI++
Sbjct: 512 GSGVEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRRVQLSVRVGTALIDM 564


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/543 (41%), Positives = 326/543 (60%), Gaps = 41/543 (7%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DV    +L+  Y+  G +  AR +FDE    DVVSWN+MI+GYV  G   E L+LF +M 
Sbjct: 128 DVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMM 187

Query: 70  QRN--------------------------------DVSWNS---ILGGLVRF----GSVD 90
           + N                                D  + S   I+  L+ F    G ++
Sbjct: 188 KTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEME 247

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
            AC +F  +  + ++SW +LI G+      KEAL LF+EM      PN   ++S+L ACA
Sbjct: 248 TACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACA 307

Query: 151 QLGALDYGNWVYSYIQK--KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAY 208
            LGA+D G W++ YI K  K +   S L  +LIDMY+KCG I+ A QVF+S   K + A+
Sbjct: 308 HLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAW 367

Query: 209 TSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD 268
            + IFG AM+G +  AF++F  M+   I PD I+++ +LSACSH G ++ G + F SM  
Sbjct: 368 NAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTH 427

Query: 269 VHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQ 328
            + I P+L+HY CM+DLLG +GL +EAE  I++M M+PD VIW +LL AC++H N E+G+
Sbjct: 428 NYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGNVELGE 487

Query: 329 RIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVV 388
           +    L + + N+ G Y+LLSNIY    +      +R  +  + +K+ PGCS IE+D VV
Sbjct: 488 KFAQNLFKIEPNNPGSYVLLSNIYATAGRWNEVARIRGLLNDKGMKKVPGCSSIEIDSVV 547

Query: 389 HEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLA 448
           HEF+ GD+ H + +EIY   EE+   ++  G+  +T  V+ ++EEE KE  + +HSEKLA
Sbjct: 548 HEFIIGDKFHPRNREIYGMLEEMEVLLQEAGFVPDTSEVLQEMEEEFKEGALRHHSEKLA 607

Query: 449 LAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCL 508
           +AFGLI TKP + + IVKN+R+C +CH A KL+SK++KR+I  RDR  +HHF DG CSC 
Sbjct: 608 IAFGLISTKPETKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCN 667

Query: 509 EYW 511
           +YW
Sbjct: 668 DYW 670



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 155/288 (53%), Gaps = 4/288 (1%)

Query: 39  DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQ 98
           +LD+    S+I+ YV+N  + +  K+FD+   R+ VS+ +++ G    G ++ A  +F++
Sbjct: 95  ELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTALVTGYASRGYIESARNMFDE 154

Query: 99  MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
           +P + +VSW  +ISG+ + G  KEAL LF+EM   ++ P+ + +V+++SA A+ G+++ G
Sbjct: 155 IPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTMVTVISASARSGSIELG 214

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
             V+S+I       +  +  ALID Y+KCG ++ A  +F     KDV ++   I G    
Sbjct: 215 RQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHL 274

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD--VHGIKPEL 276
               EA  LF+ M   G SP+ ++ +++L AC+HLG ++ G  + H   D  + G+    
Sbjct: 275 NLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIG-RWIHVYIDKRLKGVTNAS 333

Query: 277 DHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
                ++D+  + G +E A     SM  K     W  ++    +H  A
Sbjct: 334 SLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPA-WNAMIFGFAMHGRA 380



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 111/263 (42%), Gaps = 33/263 (12%)

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
           F  +  A  VF  + + +L+ W  +  G A +  P  AL L+  M SL L PNS     L
Sbjct: 10  FEGLPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFL 69

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
           L +CA+L A   G  ++ ++ K   +LD  +  +LI MY +   ++ A +VF     +DV
Sbjct: 70  LKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDV 129

Query: 206 SAYTSAIFGLAMNGH-------------------------------SIEAFELFENMKSK 234
            +YT+ + G A  G+                                 EA ELF+ M   
Sbjct: 130 VSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKT 189

Query: 235 GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEE 294
            + PD  + + V+SA +  G +E G    HS    HG    L     ++D   + G +E 
Sbjct: 190 NVRPDESTMVTVISASARSGSIELG-RQVHSWIADHGFGSNLKIVNALIDFYSKCGEMET 248

Query: 295 AENFIASMPMKPDNVIWGTLLGA 317
           A      +  K D + W  L+G 
Sbjct: 249 ACGLFLGLSYK-DVISWNILIGG 270


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 209/473 (44%), Positives = 311/473 (65%), Gaps = 7/473 (1%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
             +++ Y R G++    KLFD MP+R+ VS+ ++L    + G + +A  +F  M  + +V
Sbjct: 156 TGLVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVV 215

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSL-------DLEPNSAILVSLLSACAQLGALDYG 158
            W V+I G+AQ+G P EAL  FR+M  +        + PN   +V++LS+C Q+GAL+ G
Sbjct: 216 CWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECG 275

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
            WV+SY++   IK++  +  AL+DMY KCGS++ A +VF     KDV A+ S I G  ++
Sbjct: 276 KWVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIH 335

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDH 278
           G S EA +LF  M   G+ P  I+++AVL+AC+H G V KG+  F SM D +G++P+++H
Sbjct: 336 GFSDEALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVEH 395

Query: 279 YACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338
           Y CMV+LLGRAG ++EA + + SM ++PD V+WGTLL ACR+H N  +G+ I  +L+ + 
Sbjct: 396 YGCMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLLWACRIHSNVSLGEEIAEILVSNG 455

Query: 339 QNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSH 398
               G Y+LLSN+Y          +VR  M+   +++ PGCS IE+   VHEF+AGDR H
Sbjct: 456 LASSGTYVLLSNMYAAARNWVGVAKVRSMMKGSGVEKEPGCSSIEVKNRVHEFVAGDRRH 515

Query: 399 EKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKP 458
            ++++IY   E++   +K   Y  +T +V+ DI E+EKE  +  HSEKLALAFGLI T P
Sbjct: 516 PRSKDIYSMLEKMNGWLKERHYTPKTDAVLHDIGEQEKEQSLEVHSEKLALAFGLISTSP 575

Query: 459 GSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           G+ I+IVKN+R+C DCH+ MK++SK+  RKI +RDR  +HHFE+GSCSC +YW
Sbjct: 576 GAAIKIVKNLRVCLDCHAVMKIMSKISGRKIIMRDRNRFHHFENGSCSCRDYW 628



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 118/274 (43%), Gaps = 44/274 (16%)

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
            G +  +  +F++ P  ++  W  +I+  A       AL+ + +M +  ++PN+  L SL
Sbjct: 68  LGHLHHSVTLFHRTPNPNVFLWTHIINAHAHFDLFHHALSYYSQMLTHPIQPNAFTLSSL 127

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
           L AC     L     V+S+  K  +     +   L+D YA+ G +  A ++F +  ++ +
Sbjct: 128 LKACT----LHPARAVHSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMPERSL 183

Query: 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKG------------------------------ 235
            +YT+ +   A +G   EA  LFE M  K                               
Sbjct: 184 VSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMM 243

Query: 236 --------ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLG 287
                   + P+ I+ +AVLS+C  +G +E G  + HS  + +GIK  +     +VD+  
Sbjct: 244 MGGNGNGKVRPNEITVVAVLSSCGQVGALECG-KWVHSYVENNGIKVNVRVGTALVDMYC 302

Query: 288 RAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           + G LE+A      M  K D V W +++    +H
Sbjct: 303 KCGSLEDARKVFDVMEGK-DVVAWNSMIMGYGIH 335



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 81/159 (50%), Gaps = 16/159 (10%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V  N    +V V  +L+  Y  CG + DAR VFD  +  DVV+WNSMI GY  +G   E 
Sbjct: 282 VENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHGFSDEA 341

Query: 62  LKLFDKM----PQRNDVSWNSILGGLVRFGSVDDACRVFNQM-------PKRSLVSWVVL 110
           L+LF +M     + +D+++ ++L      G V     VF+ M       PK      +V 
Sbjct: 342 LQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVEHYGCMVN 401

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
           + G A  GR +EA  L R   S+++EP+  +  +LL AC
Sbjct: 402 LLGRA--GRMQEAYDLVR---SMEVEPDPVLWGTLLWAC 435


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 214/548 (39%), Positives = 332/548 (60%), Gaps = 40/548 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           ++  FA  V +  +L   YS CG V  AR +FD  D   VVSWNSM++GYV+NGE  + +
Sbjct: 275 IRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAI 334

Query: 63  KLFDKMPQR--------------------------------------NDVS-WNSILGGL 83
            +F+KM +                                       +D+S  NS++   
Sbjct: 335 AVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMY 394

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
            +   VD A  +FN +  R+ VSW  +I G+AQNGR  EAL  F EM+SL ++P+S  +V
Sbjct: 395 SKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMV 454

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           S++ A A+L    +  W++  I + C+  +  +  AL+DMY+KCG+I +A ++F    D+
Sbjct: 455 SVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDR 514

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
            V  + + I G   +G    A +LF+ MK   + P+ I+Y++V+SACSH G V++G  +F
Sbjct: 515 HVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHF 574

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
            SM   +G++P +DHY  MVDLLGRAG ++EA +FI +MP+ P   ++G   GAC++H+N
Sbjct: 575 KSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAXXGACKIHKN 634

Query: 324 AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE 383
            E+G++    L E + +  G ++LL+NIY  T K     EVRKTM K+ +K+ PGCS++E
Sbjct: 635 IEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVE 694

Query: 384 LDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYH 443
           L   VH F +G  +H +++ IY F EE+V +IK  GY  +T +++ D+E++ +E ++  H
Sbjct: 695 LRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVPDT-NLILDVEDDVQEQLLNSH 753

Query: 444 SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
           SEKLA+AFGL+ T PG+ I + KN+R+C DCH+A K +S V  R+I +RD + +HHF++G
Sbjct: 754 SEKLAIAFGLLNTSPGTTIHVRKNLRVCGDCHNATKYISLVTGREIIVRDMQRFHHFKNG 813

Query: 504 SCSCLEYW 511
            CSC +YW
Sbjct: 814 ICSCGDYW 821



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 103/389 (26%), Positives = 183/389 (47%), Gaps = 72/389 (18%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++ NSFA +VF    ++  Y+ C ++ DA  +FD   + D+VSWN++I G+ +NG   + 
Sbjct: 173 LITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKA 232

Query: 62  LKLFDKM----------------PQRNDVSW----NSILGGLVRFG-------------- 87
           L+L  +M                P   DV       SI G  +R G              
Sbjct: 233 LELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADM 292

Query: 88  -----SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
                SV+ A  +F+ M ++++VSW  ++ G+ QNG P++A+A+F +M    ++P    +
Sbjct: 293 YSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTI 352

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           +  L ACA LG L+ G +V+ ++ +  +  D  +  +LI MY+KC  +D+A  +F++   
Sbjct: 353 MEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNG 412

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAV------LSACSHLGWV 256
           +   ++ + I G A NG   EA   F  MKS G+ PDS + ++V      LS   H  W+
Sbjct: 413 RTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWI 472

Query: 257 ---------EKGFYYFHSMFD-------VHGIKPELD--------HYACMVDLLGRAGLL 292
                    +K  +   ++ D       +H  +   D         +  M+D  G  GL 
Sbjct: 473 HGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLG 532

Query: 293 EEAENFIASM---PMKPDNVIWGTLLGAC 318
             A +    M    ++P+++ + +++ AC
Sbjct: 533 RAALDLFDKMKKGAVEPNDITYLSVISAC 561



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 108/231 (46%), Gaps = 2/231 (0%)

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
           ++GS+++A RVF  +  +    +  ++ G+A+N   + ALA    M+  D++P       
Sbjct: 93  KYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTY 152

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           LL  C     L  G  ++  +       +      +++MYAKC  ID A ++F    ++D
Sbjct: 153 LLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERD 212

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           + ++ + I G + NG + +A EL   M+ +G  PDSI+ + VL A + +G +  G    H
Sbjct: 213 LVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVG-KSIH 271

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
                 G    ++    + D+  + G +E A      M  K   V W +++
Sbjct: 272 GYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQK-TVVSWNSMM 321



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 12/158 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +++++    ++FV  +L+  YS CG +  AR +FD   D  V++WN+MI+GY  +G    
Sbjct: 475 LIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRA 534

Query: 61  GLKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPK-----RSLVSWVVLI 111
            L LFDKM     + ND+++ S++      G VD+  R F  M +      S+  +  ++
Sbjct: 535 ALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMV 594

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
               + GR KEA      M    + P   +  +   AC
Sbjct: 595 DLLGRAGRIKEAWDFIENMP---ISPGITVYGAXXGAC 629


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 201/474 (42%), Positives = 312/474 (65%), Gaps = 3/474 (0%)

Query: 41  DVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMP 100
           D+   NSMI+ YV+ G +    K+FD+M +R+ VSW  ++    ++G ++ A  +F+ +P
Sbjct: 177 DLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLP 236

Query: 101 KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNW 160
            + +V+W  +++G+AQNGRPKEAL  F++MQ + +E +   L  ++SACAQLGA+ + NW
Sbjct: 237 LKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANW 296

Query: 161 VYSYIQKKCIKLDS--ILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
           +    ++         ++ +ALIDMY+KCGS D A +VF    +++V +Y+S I G AM+
Sbjct: 297 IRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMH 356

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDH 278
           G +  A +LF +M    I P+ +++I +LSACSH G VE+G   F  M    G+ P  DH
Sbjct: 357 GRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDH 416

Query: 279 YACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338
           YACMVDLLGRAG LEEA + + +MPM+P+  +WG LLGACR+H N ++ Q   N L + +
Sbjct: 417 YACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLE 476

Query: 339 QNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE-LDGVVHEFLAGDRS 397
            N  G YILLSNIY    + E   ++RK +R++  K+ PGCS  E  +G +H+F AGD +
Sbjct: 477 PNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDTT 536

Query: 398 HEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTK 457
           H ++ EI Q  ++++++++++GY     S  +D+ ++EKE ++  HSEKLALA+GL+CT+
Sbjct: 537 HPRSSEIRQALKQLIERLRSHGYKPNLGSAPYDLTDDEKERILMSHSEKLALAYGLLCTE 596

Query: 458 PGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            G  I+I+KNIRIC DCH+ M   S++  R+I +RD   +HHF +G+CSC  +W
Sbjct: 597 AGDTIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMRFHHFHNGTCSCGNFW 650



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 119/285 (41%), Gaps = 48/285 (16%)

Query: 58  ILEGLKLFDKMPQ------RNDVSWNS-ILGGLVRFGSVDD------ACRVFNQMPKRSL 104
           IL    LF ++ Q      RN +S  S +L  L+R  +  D         VF Q+   + 
Sbjct: 48  ILHDCTLFSQIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNP 107

Query: 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYS- 163
             W  +I G+A  G   E+   +  M+   + P S    +L  AC     +D G  V++ 
Sbjct: 108 FLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQ 167

Query: 164 YIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH------------------SYGD--- 202
            I       D  +  ++ID+Y KCG +  A +VF                    YGD   
Sbjct: 168 TILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMES 227

Query: 203 ----------KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSH 252
                     KD+ A+T+ + G A NG   EA E F+ M+  G+  D ++   V+SAC+ 
Sbjct: 228 ASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQ 287

Query: 253 LGWVEKGFYYFHSMFDVHGIKPELDHY--ACMVDLLGRAGLLEEA 295
           LG V K   +   + +  G  P  +    + ++D+  + G  +EA
Sbjct: 288 LGAV-KHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEA 331


>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 224/559 (40%), Positives = 341/559 (61%), Gaps = 57/559 (10%)

Query: 3   VKNSFAYDVFVKNSLIQFYSV---CGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEIL 59
           +K     D+ V    I F S+      ++ A  +FD+    D+V +N+M  GY R    L
Sbjct: 44  IKTHLHSDLSVLTKFINFCSLNPTTTSMQHAHHLFDQIPQPDIVLFNTMARGYARTDTPL 103

Query: 60  EGLKLFDKM------PQRNDVSWNSILGGL----------------VRFG---------- 87
               LF ++      P  +D ++ S+L                   ++ G          
Sbjct: 104 RAFTLFTQILFSGLFP--DDYTFPSLLKACASCKALEEGRQLHCLAIKLGLSENVYVCPT 161

Query: 88  ---------SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPN 138
                     +D A RVF+++ +  +V++  +I+G+A+  RP EAL+LFRE+Q+ +L+P 
Sbjct: 162 LINMYTACNEMDCARRVFDKIWEPCVVTYNAMITGYARGSRPNEALSLFRELQARNLKPT 221

Query: 139 SAILVSLLSACAQLGALDYGNWVYSYIQK----KCIKLDSILCAALIDMYAKCGSIDLAM 194
              ++S+LS+CA LGALD G W++ Y++K    + +K+D+    ALIDMYAKCGS+D A+
Sbjct: 222 DVTMLSVLSSCALLGALDLGKWMHEYVKKNGFNRFVKVDT----ALIDMYAKCGSLDDAV 277

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
            VF +   +D  A+++ I   A++GH ++A  LF+ M+  G  PD I+++ +L ACSH G
Sbjct: 278 CVFENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPDEITFLGLLYACSHTG 337

Query: 255 WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTL 314
            VE+GF YF+ M D +G+ P + HY CMVDLLGRAG LEEA  FI  +P++P  ++W TL
Sbjct: 338 LVEEGFEYFYGMRDKYGVIPGIKHYGCMVDLLGRAGRLEEAYEFIVGLPIRPTPILWRTL 397

Query: 315 LGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIK 374
           L AC  H N E+G+R+   + E D +H G YI+LSN+     + E+   VRK M +R + 
Sbjct: 398 LSACGSHGNVELGKRVIEQIFELDDSHGGDYIILSNLCARAGRWEDVNYVRKLMNERGVV 457

Query: 375 RAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMF--DIE 432
           + PGCS +E++ VVHEF +GD  H  + +++Q  +E+VK++K  GY V   S++F  D+E
Sbjct: 458 KIPGCSSVEVNNVVHEFFSGDGVHSVSTKLHQALDELVKELKLVGY-VPNTSLVFHADME 516

Query: 433 EEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIR 492
           +EEKE  + YHSEKLA+ FGL+ T PG+ IR+VKN+R+C DCHSA KL+S +F R+I +R
Sbjct: 517 DEEKEVTLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHSAAKLISLIFDRQIILR 576

Query: 493 DRKHYHHFEDGSCSCLEYW 511
           D + +HHF+DG CSC +YW
Sbjct: 577 DVQRFHHFKDGKCSCEDYW 595



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 135/336 (40%), Gaps = 80/336 (23%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + +K   + +V+V  +LI  Y+ C  +  AR VFD+  +  VV++N+MI GY R     E
Sbjct: 146 LAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMITGYARGSRPNE 205

Query: 61  GLKLFDKMPQRN----DVSWNSILG---------------------GLVRF--------- 86
            L LF ++  RN    DV+  S+L                      G  RF         
Sbjct: 206 ALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNGFNRFVKVDTALID 265

Query: 87  -----GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
                GS+DDA  VF  M  R   +W  +I  +A +G   +A++LF+EM+    EP+   
Sbjct: 266 MYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPDEIT 325

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
            + LL AC+  G ++ G + Y Y                  M  K G I           
Sbjct: 326 FLGLLYACSHTGLVEEG-FEYFY-----------------GMRDKYGVI----------- 356

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
              +  Y   +  L   G   EA+E    +    I P  I +  +LSAC   G VE G  
Sbjct: 357 -PGIKHYGCMVDLLGRAGRLEEAYEFIVGLP---IRPTPILWRTLLSACGSHGNVELGKR 412

Query: 262 YFHSMF---DVHGIKPELDHYACMVDLLGRAGLLEE 294
               +F   D HG       Y  + +L  RAG  E+
Sbjct: 413 VIEQIFELDDSHG-----GDYIILSNLCARAGRWED 443


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 217/534 (40%), Positives = 329/534 (61%), Gaps = 32/534 (5%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DV    +++  Y   GR+ +AR +FDE    +VVSW +MI+GY +NGE+    KLF+ MP
Sbjct: 173 DVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMP 232

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMP---------------KRSLV--------- 105
           +RN+VSW ++L G ++ G V+DA  +FN MP               +R +V         
Sbjct: 233 ERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEK 292

Query: 106 -------SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
                  +W  +I  + QN    EAL+ FREM    + PN   ++S+L+ CA L  LDYG
Sbjct: 293 MRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYG 352

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
             V++ + +    +D    +ALI MY KCG++D A +VFH++  KD+  + S I G A +
Sbjct: 353 REVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQH 412

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDH 278
           G   +A  +F +M+  G+SPD I+YI  L+ACS+ G V++G   F+SM     I+P  +H
Sbjct: 413 GLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEH 472

Query: 279 YACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338
           Y+CMVDLLGR+GL+EEA + I +MP++PD VIWG L+GACR+HRNAE+ +     L+E +
Sbjct: 473 YSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEVAAKKLLELE 532

Query: 339 QNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGD-RS 397
             + G Y+LLS+IY    + E+A ++RK +  R + ++PGCS IE D  VH F +GD  +
Sbjct: 533 PGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLA 592

Query: 398 HEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTK 457
           H +   I +  E++   +   GY+ +   V+ DI+EE+K   + YHSE+ A+A+GL+   
Sbjct: 593 HPEHAAILRILEKLDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIP 652

Query: 458 PGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            G  IR++KN+R+C DCHSA+KL++K+  R+I +RD   +HHF+DG CSC +YW
Sbjct: 653 EGMPIRVMKNLRVCGDCHSAIKLIAKITSREIVLRDANRFHHFKDGFCSCRDYW 706



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 165/340 (48%), Gaps = 14/340 (4%)

Query: 6   SFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLF 65
            F   V    SL++ Y   G + DA  +F +  + + VS+  ++ G +  G + E  +LF
Sbjct: 107 PFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLF 166

Query: 66  DKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALA 125
           D+MP R+ V+W ++L G  + G + +A  +F++MPKR++VSW  +ISG+AQNG    A  
Sbjct: 167 DEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARK 226

Query: 126 LFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYA 185
           LF  M     E N     ++L    Q G ++    +++ + +  +      C A++  + 
Sbjct: 227 LFEVMP----ERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVA----ACNAMMVGFG 278

Query: 186 KCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIA 245
           + G +D A  VF    ++D   +++ I     N   +EA   F  M  +G+ P+  S I+
Sbjct: 279 QRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVIS 338

Query: 246 VLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA--CMVDLLGRAGLLEEAENFIASMP 303
           +L+ C+ L  ++ G     +M        ++D +A   ++ +  + G L++A+    +  
Sbjct: 339 ILTVCAALAVLDYGREVHAAMLRCSF---DMDVFAVSALITMYIKCGNLDKAKRVFHTFE 395

Query: 304 MKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDG 343
            K D V+W +++     H   E    I + +  +  + DG
Sbjct: 396 PK-DIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDG 434



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 115/256 (44%), Gaps = 41/256 (16%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDV 74
           N+ I   +  G +  AR  F+        S+N+++ GY RN      L LF +MP R+  
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 75  SWNSILGGL---------------------------------VRFGSVDDACRVFNQMPK 101
           S+N+++ GL                                 VR G + DA R+F QMP+
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 102 RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161
           R+ VS+ VL+ G    GR  EA  LF EM   D+        ++LS   Q G +     +
Sbjct: 141 RNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDV----VAWTAMLSGYCQAGRITEARAL 196

Query: 162 YSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHS 221
           +  + K+ +    +   A+I  YA+ G ++LA ++F    +++  ++T+ + G    GH 
Sbjct: 197 FDEMPKRNV----VSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHV 252

Query: 222 IEAFELFENMKSKGIS 237
            +A ELF  M    ++
Sbjct: 253 EDAAELFNAMPEHPVA 268



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 117/265 (44%), Gaps = 23/265 (8%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N+ I    R G I      F+ MP R   S+N++L G  R    D A  +F +MP R L 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 106 SWVVLISGFA--QNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYS 163
           S+  LISG +  +   P  A AL     S+   P+     SLL    + G L     ++ 
Sbjct: 81  SYNALISGLSLRRQTLPDAAAAL----ASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQ 136

Query: 164 YIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIE 223
            + ++     ++L   L+D     G ++ A ++F    D+DV A+T+ + G    G   E
Sbjct: 137 QMPERNHVSYTVLLGGLLD----AGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITE 192

Query: 224 AFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMV 283
           A  LF+ M  + +    +S+ A++S  +  G V      F  M       PE +  +   
Sbjct: 193 ARALFDEMPKRNV----VSWTAMISGYAQNGEVNLARKLFEVM-------PERNEVSWTA 241

Query: 284 DLLG--RAGLLEEAENFIASMPMKP 306
            L+G  +AG +E+A     +MP  P
Sbjct: 242 MLVGYIQAGHVEDAAELFNAMPEHP 266



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 76/157 (48%), Gaps = 12/157 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++ SF  DVF  ++LI  Y  CG +  A+ VF   +  D+V WNSMI GY ++G   + 
Sbjct: 359 MLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQA 418

Query: 62  LKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLIS 112
           L +F  M       + +++   L      G V +   +FN M   S +      +  ++ 
Sbjct: 419 LGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVD 478

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
              ++G  +EA  L + M    +EP++ I  +L+ AC
Sbjct: 479 LLGRSGLVEEAFDLIKNMP---VEPDAVIWGALMGAC 512


>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
          Length = 582

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 203/457 (44%), Positives = 295/457 (64%), Gaps = 1/457 (0%)

Query: 56  GEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFA 115
           G + +GL L       +  ++N+++    R G + DA  +F++MP R+ VSW  +++G+ 
Sbjct: 126 GSLADGLLLLRTAAAVDASTFNTLITAYARAGRLADARALFDEMPARNAVSWSAMVNGYV 185

Query: 116 QNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI 175
           Q G  +EAL +F  MQ+ D+ P+  +LV +L+ACAQ GAL+ G WV+ Y++   IK++  
Sbjct: 186 QAGDGREALRIFARMQAEDVRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLF 245

Query: 176 LCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG 235
              AL+DMY+KCG + LAM VF     K+V A+T+ I GLAM+G   EA  LF  M+S G
Sbjct: 246 FGTALVDMYSKCGEVQLAMDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSG 305

Query: 236 ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA 295
           I PD I++I VL AC+H G V+KG   F SM   +GIKP+++HY CMVDLL R G L EA
Sbjct: 306 IRPDDIAFIGVLCACTHAGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFLYEA 365

Query: 296 ENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVET 355
           +  I  MPM+PD +IWG L+  CR H+N E  + +    I  + +  G Y+LLSNIY  +
Sbjct: 366 KEMIQKMPMEPDALIWGALMAGCRFHKNVEFAEYVAKHWILLEPDKSGAYVLLSNIYAAS 425

Query: 356 LKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKI 415
            +  +A E+R  MR++ + + PGCS +E++GV+H+F+ GD SH + ++I   W EI  +I
Sbjct: 426 GRHASAREIRHLMREKGVDKTPGCSTVEVNGVIHQFIVGDLSHPRIKDILSKWYEIDTRI 485

Query: 416 K-NYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDC 474
           +   GY  + + V+ DIEEEEKE  +  HSEKLA+AF LI       IRI KN+R+C DC
Sbjct: 486 RLEEGYIPDMKEVLLDIEEEEKEGALSRHSEKLAIAFALISISDNMPIRIFKNLRVCHDC 545

Query: 475 HSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           H   KL+SKV+ R+I +RDR  +H F++G+CSC +YW
Sbjct: 546 HHVTKLISKVYGREIVVRDRTRFHLFKEGTCSCKDYW 582



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 127/290 (43%), Gaps = 74/290 (25%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++++ + A D    N+LI  Y+  GR+ DAR +FDE    + VSW++M+NGYV+ G+  E
Sbjct: 133 LLLRTAAAVDASTFNTLITAYARAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGRE 192

Query: 61  GLKLFDKMPQRNDVSWNSILGGLV------------------------------------ 84
            L++F +M   +    +++L G++                                    
Sbjct: 193 ALRIFARMQAEDVRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLFFGTALVD 252

Query: 85  ---RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G V  A  VF +M  +++++W  +I G A +GR  EA+ LF +M+S  + P+   
Sbjct: 253 MYSKCGEVQLAMDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIA 312

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
            + +L AC   G +D G  ++  + +K                               YG
Sbjct: 313 FIGVLCACTHAGLVDKGRELFDSMVRK-------------------------------YG 341

Query: 202 DKD-VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250
            K  +  Y   +  LA NG   EA E+ + M    + PD++ + A+++ C
Sbjct: 342 IKPKIEHYGCMVDLLARNGFLYEAKEMIQKMP---MEPDALIWGALMAGC 388


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 209/466 (44%), Positives = 306/466 (65%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N++I+ Y++ G+     K+F+ MP +  V+WNS++ GLVR G ++ A R+F++M +R LV
Sbjct: 371 NAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLV 430

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           SW  +I    Q    +EA+ LFREMQ+  +  +   +V + SAC  LGALD   WV +YI
Sbjct: 431 SWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYI 490

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
           +K  I +D  L  AL+DM+++CG    AM VF     +DVSA+T+AI  +AM G++  A 
Sbjct: 491 EKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAI 550

Query: 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL 285
           ELF  M  + + PD + ++A+L+ACSH G V++G   F SM   HGI+P + HY CMVDL
Sbjct: 551 ELFNEMLEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDL 610

Query: 286 LGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRY 345
           LGRAGLLEEA + I SMP++P++V+WG+LL ACR H+N E+       L +      G +
Sbjct: 611 LGRAGLLEEAVDLIQSMPIEPNDVVWGSLLAACRKHKNVELAHYAAEKLTQLAPERVGIH 670

Query: 346 ILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIY 405
           +LLSNIY    K  +   VR  M+++ +++ PG S IE+ G++HEF +GD SH +   I 
Sbjct: 671 VLLSNIYASAGKWTDVARVRLQMKEKGVQKVPGSSSIEVQGLIHEFTSGDESHAENTHIG 730

Query: 406 QFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIV 465
              EEI  ++   GY  +T +V+ D++E+EKE ++  HSEKLA+A+GLI T  G  IR+V
Sbjct: 731 LMLEEINCRLSEAGYVPDTTNVLLDVDEQEKEHLLSRHSEKLAMAYGLITTGQGIPIRVV 790

Query: 466 KNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           KN+R+CSDCHS  KLVSK++ R+I++RD   YH F++G CSC +YW
Sbjct: 791 KNLRMCSDCHSFAKLVSKLYNREITVRDNNRYHFFKEGFCSCRDYW 836



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 177/349 (50%), Gaps = 16/349 (4%)

Query: 4   KNSFAYD------VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVV----SWNSMINGYV 53
           +N+F  D      +F+ N LI+ Y+  G    A  ++ +   + +V    ++  +++   
Sbjct: 82  RNAFGDDDGNMASLFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACS 141

Query: 54  RNGEILEGLKLFD---KMPQRNDV-SWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVV 109
           +   + EG+++     KM    D+   NS++      G VD   ++F+ M +R++VSW  
Sbjct: 142 KILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTS 201

Query: 110 LISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC 169
           LI+G++     KEA++LF +M    +EPN   +V ++SACA+L  L+ G  V SYI +  
Sbjct: 202 LINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELG 261

Query: 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFE 229
           ++L +I+  AL+DMY KCG I  A Q+F    +K++  Y + +     +  + +   + +
Sbjct: 262 MELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILD 321

Query: 230 NMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRA 289
            M  KG  PD ++ ++ ++AC+ LG +  G    H+    +G++   +    ++D+  + 
Sbjct: 322 EMLQKGPRPDKVTMLSTIAACAQLGDLSVG-KSSHAYVLRNGLEGWDNISNAIIDMYMKC 380

Query: 290 GLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338
           G  E A      MP K   V W +L+       + E+  RI + ++E D
Sbjct: 381 GKREAACKVFEHMPNKT-VVTWNSLIAGLVRDGDMELAWRIFDEMLERD 428



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 102/411 (24%), Positives = 174/411 (42%), Gaps = 72/411 (17%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K     D+FV NSLI FY+ CG+V   R +FD   + +VVSW S+INGY       E 
Sbjct: 156 VLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEA 215

Query: 62  LKLFDKMPQR----NDVSW-----------------------------------NSILGG 82
           + LF +M +     N V+                                    N+++  
Sbjct: 216 VSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNALVDM 275

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
            ++ G +  A ++F++   ++LV +  ++S +  +    + L +  EM      P+   +
Sbjct: 276 YMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTM 335

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           +S ++ACAQLG L  G   ++Y+ +  ++    +  A+IDMY KCG  + A +VF    +
Sbjct: 336 LSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPN 395

Query: 203 KDVSAYTSAIFGLAMNGHS-------------------------------IEAFELFENM 231
           K V  + S I GL  +G                                  EA ELF  M
Sbjct: 396 KTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREM 455

Query: 232 KSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGL 291
           +++GI  D ++ + + SAC +LG ++    +  +  + + I  +L     +VD+  R G 
Sbjct: 456 QNQGIPGDRVTMVGIASACGYLGALDLA-KWVCTYIEKNDIHVDLQLGTALVDMFSRCGD 514

Query: 292 LEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD 342
              A +    M  K D   W   +G   +  N E    + N ++E     D
Sbjct: 515 PSSAMHVFKRME-KRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPD 564



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 12/155 (7%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           KN    D+ +  +L+  +S CG    A  VF   +  DV +W + I      G     ++
Sbjct: 492 KNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIE 551

Query: 64  LFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLISGF 114
           LF++M ++    +DV + ++L      GSVD   ++F  M K       +V +  ++   
Sbjct: 552 LFNEMLEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLL 611

Query: 115 AQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
            + G  +EA+ L   +QS+ +EPN  +  SLL+AC
Sbjct: 612 GRAGLLEEAVDL---IQSMPIEPNDVVWGSLLAAC 643


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 217/534 (40%), Positives = 329/534 (61%), Gaps = 32/534 (5%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DV    +++  Y   GR+ +AR +FDE    +VVSW +MI+GY +NGE+    KLF+ MP
Sbjct: 173 DVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMP 232

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMP---------------KRSLV--------- 105
           +RN+VSW ++L G ++ G V+DA  +FN MP               +R +V         
Sbjct: 233 ERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEK 292

Query: 106 -------SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
                  +W  +I  + QN    EAL+ FREM    + PN   ++S+L+ CA L  LDYG
Sbjct: 293 MCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYG 352

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
             V++ + +    +D    +ALI MY KCG++D A +VFH++  KD+  + S I G A +
Sbjct: 353 REVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQH 412

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDH 278
           G   +A  +F +M+  G+SPD I+YI  L+ACS+ G V++G   F+SM     I+P  +H
Sbjct: 413 GLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEH 472

Query: 279 YACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338
           Y+CMVDLLGR+GL+EEA + I +MP++PD VIWG L+GACR+HRNAE+ +     L+E +
Sbjct: 473 YSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELE 532

Query: 339 QNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGD-RS 397
             + G Y+LLS+IY    + E+A ++RK +  R + ++PGCS IE D  VH F +GD  +
Sbjct: 533 PGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLA 592

Query: 398 HEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTK 457
           H +   I +  E++   +   GY+ +   V+ DI+EE+K   + YHSE+ A+A+GL+   
Sbjct: 593 HPEHAAILRILEKLDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIP 652

Query: 458 PGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            G  IR++KN+R+C DCHSA+KL++K+  R+I +RD   +HHF+DG CSC +YW
Sbjct: 653 EGMPIRVMKNLRVCGDCHSAIKLIAKITSREIILRDANRFHHFKDGFCSCRDYW 706



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 165/340 (48%), Gaps = 14/340 (4%)

Query: 6   SFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLF 65
            F   V    SL++ Y   G + DA  +F +  + + VS+  ++ G +  G + E  +LF
Sbjct: 107 PFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLF 166

Query: 66  DKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALA 125
           D+MP R+ V+W ++L G  + G + +A  +F++MPKR++VSW  +ISG+AQNG    A  
Sbjct: 167 DEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARK 226

Query: 126 LFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYA 185
           LF  M     E N     ++L    Q G ++    +++ + +  +      C A++  + 
Sbjct: 227 LFEVMP----ERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVA----ACNAMMVGFG 278

Query: 186 KCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIA 245
           + G +D A  VF    ++D   +++ I     N   +EA   F  M  +G+ P+  S I+
Sbjct: 279 QRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVIS 338

Query: 246 VLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA--CMVDLLGRAGLLEEAENFIASMP 303
           +L+ C+ L  ++ G     +M        ++D +A   ++ +  + G L++A+    +  
Sbjct: 339 ILTVCAALAVLDYGREVHAAMLRCSF---DMDVFAVSALITMYIKCGNLDKAKRVFHTFE 395

Query: 304 MKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDG 343
            K D V+W +++     H   E    I + +  +  + DG
Sbjct: 396 PK-DIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDG 434



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 115/256 (44%), Gaps = 41/256 (16%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDV 74
           N+ I   +  G +  AR  F+        S+N+++ GY RN      L LF +MP R+  
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 75  SWNSILGGL---------------------------------VRFGSVDDACRVFNQMPK 101
           S+N+++ GL                                 VR G + DA R+F QMP+
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 102 RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161
           R+ VS+ VL+ G    GR  EA  LF EM   D+        ++LS   Q G +     +
Sbjct: 141 RNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDV----VAWTAMLSGYCQAGRITEARAL 196

Query: 162 YSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHS 221
           +  + K+ +    +   A+I  YA+ G ++LA ++F    +++  ++T+ + G    GH 
Sbjct: 197 FDEMPKRNV----VSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHV 252

Query: 222 IEAFELFENMKSKGIS 237
            +A ELF  M    ++
Sbjct: 253 EDAAELFNAMPEHPVA 268



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 117/265 (44%), Gaps = 23/265 (8%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N+ I    R G I      F+ MP R   S+N++L G  R    D A  +F +MP R L 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 106 SWVVLISGFA--QNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYS 163
           S+  LISG +  +   P  A AL     S+   P+     SLL    + G L     ++ 
Sbjct: 81  SYNALISGLSLRRQTLPDAAAAL----ASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQ 136

Query: 164 YIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIE 223
            + ++     ++L   L+D     G ++ A ++F    D+DV A+T+ + G    G   E
Sbjct: 137 QMPERNHVSYTVLLGGLLD----AGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITE 192

Query: 224 AFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMV 283
           A  LF+ M  + +    +S+ A++S  +  G V      F  M       PE +  +   
Sbjct: 193 ARALFDEMPKRNV----VSWTAMISGYAQNGEVNLARKLFEVM-------PERNEVSWTA 241

Query: 284 DLLG--RAGLLEEAENFIASMPMKP 306
            L+G  +AG +E+A     +MP  P
Sbjct: 242 MLVGYIQAGHVEDAAELFNAMPEHP 266



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 76/157 (48%), Gaps = 12/157 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++ SF  DVF  ++LI  Y  CG +  A+ VF   +  D+V WNSMI GY ++G   + 
Sbjct: 359 MLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQA 418

Query: 62  LKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLIS 112
           L +F  M       + +++   L      G V +   +FN M   S +      +  ++ 
Sbjct: 419 LGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVD 478

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
              ++G  +EA  L + M    +EP++ I  +L+ AC
Sbjct: 479 LLGRSGLVEEAFDLIKNMP---VEPDAVIWGALMGAC 512


>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/551 (40%), Positives = 337/551 (61%), Gaps = 43/551 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVR-----DARWVFDESDDLDVVSWNSMINGYVRN 55
           ++++     D ++  SL++ Y+     R      +  VFD     +V  WN MI   + N
Sbjct: 77  LILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKVCIEN 136

Query: 56  GEILEGLKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRS-------L 104
            E  + + L+ +M     + N  ++ ++L      G V +  +V   + K         L
Sbjct: 137 NEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGGDGHIL 196

Query: 105 VSWVVLISGFA-----------------------QNGRPKEALALFREMQSLDLEPNSAI 141
            S + + + F                        + G   EAL +F +MQ   + P   +
Sbjct: 197 SSAIRMYASFGRLVEARRILDDKGGEVDAVCMPDRKGCFMEALEIFHQMQKEKIRPRKFV 256

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           L S+LSACA LGALD G W+++Y ++  I+LD +L  +L+DMYAKCG IDLA +VF    
Sbjct: 257 LPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMS 316

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
           +K+VS++ + I GLAM+G + +A +LF  M    I+P+ I+++ VL+AC+H G V+KG  
Sbjct: 317 NKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---INPNEITFVGVLNACAHGGLVQKGLT 373

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            F+SM   +G++P+++HY C+VDLLGRAGLL EAE  ++S+P +P   +WG LLGACR H
Sbjct: 374 IFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKH 433

Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
            N E+G+R+G +L+E +  + GRY LLSNIY +  + E   EVRK M++R IK  PG S+
Sbjct: 434 GNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSI 493

Query: 382 IELD-GVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVI 440
           I+L  G VH+F+ GD SH + ++IYQ  +++ ++++  GY  +   V+FDI+EEEKET +
Sbjct: 494 IDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEKETAV 553

Query: 441 GYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF 500
             HSEKLA+ FGLI T PG+ IRIVKN+R+C DCHSA KL+S+V+ R+I +RDR  YHHF
Sbjct: 554 WQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHF 613

Query: 501 EDGSCSCLEYW 511
            +G+CSC ++W
Sbjct: 614 RNGACSCKDFW 624


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 214/533 (40%), Positives = 323/533 (60%), Gaps = 31/533 (5%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DV   N++I  Y+  G++ +AR +FDES   DV +W +M++GY++N  + E  +LFDKMP
Sbjct: 249 DVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMP 308

Query: 70  QRNDVSWNSILGGLVR-------------------------------FGSVDDACRVFNQ 98
           +RN+VSWN++L G V+                                G + +A  +F++
Sbjct: 309 ERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDK 368

Query: 99  MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
           MPKR  VSW  +I+G++Q+G   EAL LF +M+      N +   S LS CA + AL+ G
Sbjct: 369 MPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELG 428

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
             ++  + K   +    +  AL+ MY KCGSI+ A  +F     KD+ ++ + I G + +
Sbjct: 429 KQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRH 488

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDH 278
           G    A   FE+MK +G+ PD  + +AVLSACSH G V+KG  YF++M   +G+ P   H
Sbjct: 489 GFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQH 548

Query: 279 YACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338
           YACMVDLLGRAGLLE+A N + +MP +PD  IWGTLLGA RVH N E+ +   + +   +
Sbjct: 549 YACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAME 608

Query: 339 QNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSH 398
             + G Y+LLSN+Y  + +  +  ++R  MR + +K+ PG S IE+    H F  GD  H
Sbjct: 609 PENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFH 668

Query: 399 EKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKP 458
            +  EI+ F EE+  ++K  GY  +T  V+ D+EEEEKE ++ YHSE+LA+A+G++    
Sbjct: 669 PEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSS 728

Query: 459 GSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           G  IR++KN+R+C DCH+A+K ++++  R I +RD   +HHF+DGSCSC +YW
Sbjct: 729 GRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 156/304 (51%), Gaps = 20/304 (6%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDV 74
           N +I  Y   G    AR +FDE  + D+VSWN MI GYVRN  + +  +LF+ MP+R+  
Sbjct: 99  NGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVC 158

Query: 75  SWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD 134
           SWN++L G  + G VDDA  VF++MP+++ VSW  L+S + QN + +EA  LF+  ++  
Sbjct: 159 SWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWA 218

Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
           L   + +L   +     + A  + +   S   +  +  ++I+       YA+ G ID A 
Sbjct: 219 LVSWNCLLGGFVKKKKIVEARQFFD---SMNVRDVVSWNTIITG-----YAQSGKIDEAR 270

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
           Q+F     +DV  +T+ + G   N    EA ELF+ M  +    + +S+ A+L+     G
Sbjct: 271 QLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPER----NEVSWNAMLA-----G 321

Query: 255 WVE-KGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGT 313
           +V+ +       +FDV   +  +  +  M+    + G + EA+N    MP K D V W  
Sbjct: 322 YVQGERMEMAKELFDVMPCR-NVSTWNTMITGYAQCGKISEAKNLFDKMP-KRDPVSWAA 379

Query: 314 LLGA 317
           ++  
Sbjct: 380 MIAG 383



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 76/156 (48%), Gaps = 12/156 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +VK  +    FV N+L+  Y  CG + +A  +F E    D+VSWN+MI GY R+G     
Sbjct: 435 LVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVA 494

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV-----SWVVLIS 112
           L+ F+ M +     +D +  ++L      G VD   + F  M +   V      +  ++ 
Sbjct: 495 LRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVD 554

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148
              + G  ++A  L   M+++  EP++AI  +LL A
Sbjct: 555 LLGRAGLLEDAHNL---MKNMPFEPDAAIWGTLLGA 587


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 217/534 (40%), Positives = 329/534 (61%), Gaps = 32/534 (5%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DV    +++  Y   GR+ +AR +FDE    +VVSW +MI+GY +NGE+    KLF+ MP
Sbjct: 173 DVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMP 232

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMP---------------KRSLV--------- 105
           +RN+VSW ++L G ++ G V+DA  +FN MP               +R +V         
Sbjct: 233 ERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEK 292

Query: 106 -------SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
                  +W  +I  + QN    EAL+ FREM    + PN   ++S+L+ CA L  LDYG
Sbjct: 293 MCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYG 352

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
             V++ + +    +D    +ALI MY KCG++D A +VFH++  KD+  + S I G A +
Sbjct: 353 REVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQH 412

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDH 278
           G   +A  +F +M+  G+SPD I+YI  L+ACS+ G V++G   F+SM     I+P  +H
Sbjct: 413 GLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEH 472

Query: 279 YACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338
           Y+CMVDLLGR+GL+EEA + I +MP++PD VIWG L+GACR+HRNAE+ +     L+E +
Sbjct: 473 YSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELE 532

Query: 339 QNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGD-RS 397
             + G Y+LLS+IY    + E+A ++RK +  R + ++PGCS IE D  VH F +GD  +
Sbjct: 533 PGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLA 592

Query: 398 HEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTK 457
           H +   I +  E++   +   GY+ +   V+ DI+EE+K   + YHSE+ A+A+GL+   
Sbjct: 593 HPEHAAILRILEKLDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIP 652

Query: 458 PGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            G  IR++KN+R+C DCHSA+KL++K+  R+I +RD   +HHF+DG CSC +YW
Sbjct: 653 EGMPIRVMKNLRVCGDCHSAIKLIAKITSREIILRDANRFHHFKDGFCSCRDYW 706



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 157/318 (49%), Gaps = 14/318 (4%)

Query: 6   SFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLF 65
            F   V    SL++ Y   G + DA  +F +  + + VS+  ++ G +  G + E  +LF
Sbjct: 107 PFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLF 166

Query: 66  DKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALA 125
           D+MP R+ V+W ++L G  + G + +A  +F++MPKR++VSW  +ISG+AQNG    A  
Sbjct: 167 DEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARK 226

Query: 126 LFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYA 185
           LF  M     E N     ++L    Q G ++    +++ + +  +      C A++  + 
Sbjct: 227 LFEVMP----ERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVA----ACNAMMVGFG 278

Query: 186 KCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIA 245
           + G +D A  VF    ++D   +++ I     N   +EA   F  M  +G+ P+  S I+
Sbjct: 279 QRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVIS 338

Query: 246 VLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA--CMVDLLGRAGLLEEAENFIASMP 303
           +L+ C+ L  ++ G     +M        ++D +A   ++ +  + G L++A+    +  
Sbjct: 339 ILTVCAALAVLDYGREVHAAMLRCSF---DMDVFAVSALITMYIKCGNLDKAKRVFHTFE 395

Query: 304 MKPDNVIWGTLLGACRVH 321
            K D V+W +++     H
Sbjct: 396 PK-DIVMWNSMITGYAQH 412



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 115/256 (44%), Gaps = 41/256 (16%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDV 74
           N+ I   +  G +  AR  F+        S+N+++ GY RN      L LF +MP R+  
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 75  SWNSILGGL---------------------------------VRFGSVDDACRVFNQMPK 101
           S+N+++ GL                                 VR G + DA R+F QMP+
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 102 RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161
           R+ VS+ VL+ G    GR  EA  LF EM   D+        ++LS   Q G +     +
Sbjct: 141 RNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDV----VAWTAMLSGYCQAGRITEARAL 196

Query: 162 YSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHS 221
           +  + K+ +    +   A+I  YA+ G ++LA ++F    +++  ++T+ + G    GH 
Sbjct: 197 FDEMPKRNV----VSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHV 252

Query: 222 IEAFELFENMKSKGIS 237
            +A ELF  M    ++
Sbjct: 253 EDAAELFNAMPEHPVA 268



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 117/265 (44%), Gaps = 23/265 (8%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N+ I    R G I      F+ MP R   S+N++L G  R    D A  +F +MP R L 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 106 SWVVLISGFA--QNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYS 163
           S+  LISG +  +   P  A AL     S+   P+     SLL    + G L     ++ 
Sbjct: 81  SYNALISGLSLRRQTLPDAAAAL----ASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQ 136

Query: 164 YIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIE 223
            + ++     ++L   L+D     G ++ A ++F    D+DV A+T+ + G    G   E
Sbjct: 137 QMPERNHVSYTVLLGGLLD----AGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITE 192

Query: 224 AFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMV 283
           A  LF+ M  + +    +S+ A++S  +  G V      F  M       PE +  +   
Sbjct: 193 ARALFDEMPKRNV----VSWTAMISGYAQNGEVNLARKLFEVM-------PERNEVSWTA 241

Query: 284 DLLG--RAGLLEEAENFIASMPMKP 306
            L+G  +AG +E+A     +MP  P
Sbjct: 242 MLVGYIQAGHVEDAAELFNAMPEHP 266



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 76/157 (48%), Gaps = 12/157 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++ SF  DVF  ++LI  Y  CG +  A+ VF   +  D+V WNSMI GY ++G   + 
Sbjct: 359 MLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQA 418

Query: 62  LKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLIS 112
           L +F  M       + +++   L      G V +   +FN M   S +      +  ++ 
Sbjct: 419 LGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVD 478

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
              ++G  +EA  L + M    +EP++ I  +L+ AC
Sbjct: 479 LLGRSGLVEEAFDLIKNMP---VEPDAVIWGALMGAC 512


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 226/570 (39%), Positives = 331/570 (58%), Gaps = 61/570 (10%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMIN------------ 50
           VKN    DVFV N+L+Q YS CG +  AR +FD+  + DVVSW++MI             
Sbjct: 136 VKNGLVSDVFVVNALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQR 195

Query: 51  ----------GYVRNGEILEGLKLFDKMPQRN----DVSWNSIL--GGLV---------- 84
                     GY+R  ++ EG +LF +M + N    D++  S++   G V          
Sbjct: 196 SIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLH 255

Query: 85  -----------------------RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
                                  + G +  A  +F+ M  + +++W  +IS +AQ     
Sbjct: 256 AYILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCID 315

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
            A  LF +M+   + PN   +VSLLS CA  GALD G W ++YI K+ +++D IL  ALI
Sbjct: 316 YAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALI 375

Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
           DMYAKCG I  A ++F    D+D+  +   + G  M+G+  +A +LF  M++ G+ P+ I
Sbjct: 376 DMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDI 435

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
           ++I  L ACSH G V +G   F  M    G+ P+++HY CMVDLLGRAGLL+EA   I S
Sbjct: 436 TFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIES 495

Query: 302 MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361
           MP+ P+  IWG +L AC++H+N+ MG+     L+  +  + G  +L+SNIY    +  + 
Sbjct: 496 MPVTPNIAIWGAMLAACKIHKNSNMGELAARELLALEPQNCGYKVLMSNIYAAANRWNDV 555

Query: 362 EEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYN 421
             +RK ++   IK+ PG S IE++G+VH+F  GD +H   ++I +   E+ KK+K  GY 
Sbjct: 556 AGMRKAVKDTGIKKEPGMSSIEVNGLVHDFKMGDTAHPLIEKISEMLAEMSKKLKEAGYL 615

Query: 422 VETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLV 481
            +T  V+ +I+EEEKET + YHSEKLA+AFGLI T PG+ IR+VKN+RIC DCH+  KL+
Sbjct: 616 PDTSVVLHNIDEEEKETALNYHSEKLAMAFGLISTAPGTPIRVVKNLRICDDCHTVTKLL 675

Query: 482 SKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           SK++KR I +RDR  +HHF +GSCSC  YW
Sbjct: 676 SKIYKRVIIVRDRNRFHHFREGSCSCGGYW 705



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 111/240 (46%), Gaps = 44/240 (18%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++N F   + +  +L+  Y  CG +R AR +FD   + DV++W +MI+ Y +   I   
Sbjct: 258 ILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYA 317

Query: 62  LKLFDKMP----QRNDVSWNSIL------GGL---------------------------- 83
            +LF +M     + N+++  S+L      G L                            
Sbjct: 318 FQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDM 377

Query: 84  -VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G +  A R+F++   R + +W V+++G+  +G  ++AL LF EM++L ++PN    
Sbjct: 378 YAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITF 437

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKK---CIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
           +  L AC+  G +  G  ++  +        K++   C  ++D+  + G +D A ++  S
Sbjct: 438 IGALHACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGC--MVDLLGRAGLLDEAYKMIES 495



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 101/220 (45%), Gaps = 24/220 (10%)

Query: 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
           P+ AL  +  M+ LD+E +S I+ S+L AC+Q+     G  ++ +  K  +  D  +  A
Sbjct: 90  PRYALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNA 149

Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDV-------SAYTSAIFGL---------AMNGHSI- 222
           L+ MY++CGS+  A  +F    ++DV        AY +  +G          AM    I 
Sbjct: 150 LMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIR 209

Query: 223 -----EAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELD 277
                E   LF  M  + + P+ I+ ++++ +C  +G V+ G    H+    +G    L 
Sbjct: 210 CNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLG-KRLHAYILRNGFGMSLA 268

Query: 278 HYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
               +VD+ G+ G +  A     SM  K D + W  ++ A
Sbjct: 269 LATALVDMYGKCGEIRSARAIFDSMKNK-DVMTWTAMISA 307


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 224/512 (43%), Positives = 320/512 (62%), Gaps = 21/512 (4%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + +K  F  DVFV+ SL+  YS CG +  AR VFD   D DVV WNS+I+G         
Sbjct: 140 LALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDG--------- 190

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
                      N VSWN+++ G ++ G  D A  +F QMP   LV+W ++I+G+  NG+ 
Sbjct: 191 -----------NLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQF 239

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
            +A+ +F  M  L   P+ A LVS+LSA + L  L  G W++SY++K   +LD IL  +L
Sbjct: 240 MDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSL 299

Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           I+MYAKCG I+ A+ VF +   K V  +T+ I GL ++G +  A  LF  M   G+ P++
Sbjct: 300 IEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNA 359

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
           I +I VL+AC+H G V+ G  YF  M + + I+P L+HY C+VD+L RAG LEEA+N I 
Sbjct: 360 IIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIE 419

Query: 301 SMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGEN 360
           +MP+ P+ VIW +LLG  R H   ++G+     +IE      G YILLSN+Y  +   E 
Sbjct: 420 NMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEK 479

Query: 361 AEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGY 420
              VR+ M KR  ++ PGCS +E  G +HEF+ GD SH +T+EIY    E+ +K+K  G+
Sbjct: 480 VSHVREMMYKRGFRKDPGCSSVEHKGTLHEFIVGDISHPQTKEIYAKMSEMKEKLKCVGH 539

Query: 421 NVETRSVMFDIE-EEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMK 479
             +T  V+  IE E+EKE  +  HSE+LA+AFGLI  KPG  IRI+KN+R+C+DCHS  K
Sbjct: 540 VPDTTQVLLCIEGEKEKEAELENHSERLAIAFGLINVKPGIPIRIMKNLRVCNDCHSVTK 599

Query: 480 LVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           L+SK++ R+I +RD   +HHF++GSCSC++YW
Sbjct: 600 LLSKIYSREIIVRDNCRFHHFKNGSCSCMDYW 631



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 106/243 (43%), Gaps = 44/243 (18%)

Query: 95  VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA 154
           +F+++ +RSL+ W  +I  + +N    + + LF E+    L P++  L  ++  CA+LG 
Sbjct: 72  IFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVHEYL-PDNFTLPCVIKGCARLGV 130

Query: 155 LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS---- 210
           +  G  ++    K     D  +  +L++MY+KCG ID A +VF    DKDV  + S    
Sbjct: 131 VQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDG 190

Query: 211 --------------------------------------AIFGLAMNGHSIEAFELFENMK 232
                                                  I G  +NG  ++A ++F  M 
Sbjct: 191 NLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMML 250

Query: 233 SKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLL 292
             G  P   + ++VLSA S L  + KG  + HS  + +G + +      ++++  + G +
Sbjct: 251 KLGSRPSHATLVSVLSAVSGLAVLGKG-RWIHSYMEKNGFELDGILGTSLIEMYAKCGCI 309

Query: 293 EEA 295
           E A
Sbjct: 310 ESA 312


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 211/502 (42%), Positives = 312/502 (62%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DVF   +++  Y   G + +AR VFD   + + VSWN++I GYV+   + +  +LF+ MP
Sbjct: 265 DVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMP 324

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE 129
            +N  SWN+++ G  + G +  A   F++MP+R  +SW  +I+G+AQ+G  +EAL LF E
Sbjct: 325 CQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVE 384

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
           M+      N +   S LS CA++ AL+ G  V+  + K  ++    +  AL+ MY KCG+
Sbjct: 385 MKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGN 444

Query: 190 IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
           ID A  VF    +K+V ++ + I G A +G   EA  LFE+MK  GI PD ++ + VLSA
Sbjct: 445 IDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSA 504

Query: 250 CSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNV 309
           CSH G V+KG  YF+SM   +GI     HY CM+DLLGRAG L++A+N + +MP +PD  
Sbjct: 505 CSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAA 564

Query: 310 IWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMR 369
            WG LLGA R+H N E+G++   M+ E + ++ G Y+LLSN+Y  + +  +   +R  MR
Sbjct: 565 TWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMR 624

Query: 370 KRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMF 429
            R +K+ PG S +E+   +H F  GD  H +   IY F EE+  K+K  GY   T+ V+ 
Sbjct: 625 DRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTKLVLH 684

Query: 430 DIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKI 489
           D+EEEEK  ++ YHSEKLA+AFG++    G  IR++KN+R+C DCH+AMK +SK+  R I
Sbjct: 685 DVEEEEKVHMLKYHSEKLAVAFGILAIPAGRPIRVIKNLRVCEDCHNAMKHISKIVGRLI 744

Query: 490 SIRDRKHYHHFEDGSCSCLEYW 511
            +RD   +HHF  G CSC +YW
Sbjct: 745 ILRDSHRFHHFNGGQCSCGDYW 766



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 83/257 (32%), Positives = 140/257 (54%), Gaps = 12/257 (4%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DV   N+++  Y+  G V++A+ +FDE    + +SWN M+  YV+NG I +  +LF+   
Sbjct: 141 DVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKA 200

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE 129
               +SWN ++GG V+   + DA  +F++MP+R  VSW  +ISG+AQNG   EA  LF E
Sbjct: 201 DWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEE 260

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
               D+        +++S   Q G LD    V+  + +K    +S+   A+I  Y +C  
Sbjct: 261 SPVRDV----FTWTAMVSGYVQNGMLDEARRVFDGMPEK----NSVSWNAIIAGYVQCKR 312

Query: 190 IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
           +D A ++F +   ++VS++ + I G A NG   +A   F+ M  +    DSIS+ A+++ 
Sbjct: 313 MDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQR----DSISWAAIIAG 368

Query: 250 CSHLGWVEKGFYYFHSM 266
            +  G+ E+  + F  M
Sbjct: 369 YAQSGYGEEALHLFVEM 385



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 156/335 (46%), Gaps = 41/335 (12%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D+   N  I  +   G+   A  +F+       +SWN+MI+G + N +     +LF+KMP
Sbjct: 48  DIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKMP 107

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE 129
            R+ VSWN ++ G VR+ ++  A  +F+QMP+R +VSW  ++SG+AQNG  KEA  +F E
Sbjct: 108 TRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDE 167

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVY----------------SYIQK------ 167
           M       NS     +L+A  Q G ++    ++                 Y+++      
Sbjct: 168 MPC----KNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDA 223

Query: 168 -----KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSI 222
                +  + D +    +I  YA+ G +  A ++F     +DV  +T+ + G   NG   
Sbjct: 224 RGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLD 283

Query: 223 EAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACM 282
           EA  +F+ M  K    +S+S+ A+++       +++    F +M         +  +  M
Sbjct: 284 EARRVFDGMPEK----NSVSWNAIIAGYVQCKRMDQARELFEAM-----PCQNVSSWNTM 334

Query: 283 VDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
           +    + G + +A NF   MP + D++ W  ++  
Sbjct: 335 ITGYAQNGDIAQARNFFDRMPQR-DSISWAAIIAG 368



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 80/166 (48%), Gaps = 12/166 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VVK       +V N+L+  Y  CG + DA  VF+  ++ +VVSWN+MI GY R+G   E 
Sbjct: 420 VVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEA 479

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLIS 112
           L LF+ M +     +DV+   +L      G VD     F  M +   ++     +  +I 
Sbjct: 480 LMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMID 539

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
              + GR  +A  L   M+++  EP++A   +LL A    G  + G
Sbjct: 540 LLGRAGRLDDAQNL---MKNMPFEPDAATWGALLGASRIHGNTELG 582


>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Vitis vinifera]
          Length = 615

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 219/509 (43%), Positives = 310/509 (60%), Gaps = 31/509 (6%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           VK  F YD  V++ LI  Y+  G +     VF    + D+V   +M++   + G++    
Sbjct: 138 VKYGFEYDPHVQSGLIYMYAELGGLDACHRVFSSICEPDLVCQTAMVSACAKMGDVGFAR 197

Query: 63  KLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKE 122
           KLFD                               +M  +  ++W  +ISG+ Q G+ +E
Sbjct: 198 KLFD-------------------------------KMSHKDPIAWNAMISGYVQCGQSRE 226

Query: 123 ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182
           AL+LF  MQ   ++ N   +VS+LSAC+ LGALD G W ++YI++  +++   L  ALID
Sbjct: 227 ALSLFNLMQREGVKVNEVSMVSVLSACSHLGALDQGRWAHAYIERNKLRMTLTLGTALID 286

Query: 183 MYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSIS 242
           MYAKCG+++ AM+VF    +K+V  ++SAI GLAMNG   +  ELF  MK   + P+ I+
Sbjct: 287 MYAKCGNMNKAMEVFWGMKEKNVYTWSSAIGGLAMNGAGEKCLELFSLMKQDSVQPNEIT 346

Query: 243 YIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM 302
           +++VL  CS +G VE+G  +F SM  V+GI+P L+HY CMVDL GRAG L+EA NFI SM
Sbjct: 347 FVSVLRGCSVVGLVEEGRKHFESMSKVYGIEPRLEHYGCMVDLYGRAGHLDEALNFINSM 406

Query: 303 PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAE 362
           P++P    WG LL AC+++RN EMG+     ++E +  + G Y+LLSNIY ++   +   
Sbjct: 407 PVRPHVGAWGALLNACKIYRNMEMGELASRKIVELEAKNHGAYVLLSNIYADSKDWDRVS 466

Query: 363 EVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNV 422
            VR+TM  + +++ PGCS+IE+ G VHEF  GD+SH +  EI     EI +++K  GY  
Sbjct: 467 NVRQTMNVKGVRKQPGCSVIEVGGEVHEFFVGDKSHPRYAEIQVMLGEISRRLKLSGYVA 526

Query: 423 ETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVS 482
            T  V FDIEEEEKE  +  HSEK+A+AFGLI   P   IRIVKN+R+C DCH A K++S
Sbjct: 527 NTNPVFFDIEEEEKEDALCMHSEKIAIAFGLISLSPDVPIRIVKNLRVCWDCHDATKMIS 586

Query: 483 KVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           K F R+I +RDR  +HHF DG CSC  YW
Sbjct: 587 KAFNREIVVRDRNRFHHFRDGECSCKGYW 615



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 113/258 (43%), Gaps = 37/258 (14%)

Query: 94  RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALF-REMQSLD-LEPNSAILVSLLSACAQ 151
           +V +     +L ++  +I   +++  P  +   + R + S   L P++     L+   AQ
Sbjct: 64  QVLDNSQNPTLFTFNSMIRAHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFLVRTSAQ 123

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS------------ 199
           L A   G+ V+    K   + D  + + LI MYA+ G +D   +VF S            
Sbjct: 124 LLAHGTGSSVHGAAVKYGFEYDPHVQSGLIYMYAELGGLDACHRVFSSICEPDLVCQTAM 183

Query: 200 ------YGD-------------KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
                  GD             KD  A+ + I G    G S EA  LF  M+ +G+  + 
Sbjct: 184 VSACAKMGDVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQREGVKVNE 243

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
           +S ++VLSACSHLG +++G  + H+  + + ++  L     ++D+  + G + +A     
Sbjct: 244 VSMVSVLSACSHLGALDQG-RWAHAYIERNKLRMTLTLGTALIDMYAKCGNMNKAMEVFW 302

Query: 301 SMPMKPDNV-IWGTLLGA 317
              MK  NV  W + +G 
Sbjct: 303 G--MKEKNVYTWSSAIGG 318



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 12/157 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           + +N     + +  +LI  Y+ CG +  A  VF    + +V +W+S I G   NG   + 
Sbjct: 269 IERNKLRMTLTLGTALIDMYAKCGNMNKAMEVFWGMKEKNVYTWSSAIGGLAMNGAGEKC 328

Query: 62  LKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPK-----RSLVSWVVLIS 112
           L+LF  M     Q N++++ S+L G    G V++  + F  M K       L  +  ++ 
Sbjct: 329 LELFSLMKQDSVQPNEITFVSVLRGCSVVGLVEEGRKHFESMSKVYGIEPRLEHYGCMVD 388

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
            + + G   EAL     + S+ + P+     +LL+AC
Sbjct: 389 LYGRAGHLDEALNF---INSMPVRPHVGAWGALLNAC 422


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 207/502 (41%), Positives = 311/502 (61%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DVF   +++  Y+  G + +A+ VFD   D + VSWN+M+  YV+   + E  +LFD MP
Sbjct: 323 DVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAVSWNAMMAAYVQRRMMEEAKELFDAMP 382

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE 129
            RN  SWN++L G  + G +D+A  +F  MP++  VSW  +++ ++Q G  +E L LF+E
Sbjct: 383 CRNVASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKE 442

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
           M       N +    +LS CA + AL+ G  ++S + K    +   +  AL+ MY KCGS
Sbjct: 443 MGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGS 502

Query: 190 IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
           ++ A   F    ++DV ++ + I G A +G   EA E+F+ M+     PD I+ + VL+A
Sbjct: 503 MEEAHSAFEEMEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAA 562

Query: 250 CSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNV 309
           CSH G VEKG  YF+SM    G+  + +HY CM+DLLGRAG L+EA N +  MP +PD+ 
Sbjct: 563 CSHSGLVEKGISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDST 622

Query: 310 IWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMR 369
           +WG LLGA R+HRN+E+G+     + E +  + G Y+LLSNIY  + K  + +++R  M 
Sbjct: 623 MWGALLGASRIHRNSELGRNAAEKIFELEPENAGMYVLLSNIYASSGKWRDVDKMRHIMH 682

Query: 370 KRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMF 429
           +R +K+ PG S IE+   VH F  GD  H + ++IY F E++  ++K  GY   T  V+ 
Sbjct: 683 ERGVKKVPGFSWIEVQNKVHTFSVGDSVHPEREDIYAFLEDLDIRMKKAGYVSATDMVLH 742

Query: 430 DIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKI 489
           D+EEEEKE ++ YHSEKLA+A+G++   PG  IR++KN+R+C DCH+A K +S +  R I
Sbjct: 743 DVEEEEKEHMLKYHSEKLAVAYGILKIPPGRPIRVIKNLRVCRDCHTAFKCISAIEGRLI 802

Query: 490 SIRDRKHYHHFEDGSCSCLEYW 511
            +RD   +HHF DGSCSC +YW
Sbjct: 803 ILRDSNRFHHFRDGSCSCGDYW 824



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 149/336 (44%), Gaps = 43/336 (12%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           +V  +N  I  +   GRV DA  +F         ++N+M+ GY  NG + + L  F  +P
Sbjct: 106 EVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIP 165

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE 129
           + +  S+N++L  L    S+ D   +F++MP +  VS+ V+IS  A +G     ++L R 
Sbjct: 166 RPDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHG----LVSLARH 221

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
              L  E ++     +L+A  + G +     ++        + D+I   AL+  Y +   
Sbjct: 222 YFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFD----SRTEWDAISWNALMAGYVQRSQ 277

Query: 190 IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISP--DSISYIAVL 247
           I+ A ++F+    +DV ++ + + G A  G   EA  LF+      ++P  D  ++ A++
Sbjct: 278 IEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLFD------VAPIRDVFTWTAIV 331

Query: 248 SACSHLGWVEKGFYYFHSMFDVHGI------------------KPELDHYAC-------- 281
           S  +  G +E+    F +M D + +                  K   D   C        
Sbjct: 332 SGYAQNGMLEEAKRVFDAMPDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASWNT 391

Query: 282 MVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
           M+    +AG+L+EA      MP K D V W  +L A
Sbjct: 392 MLTGYAQAGMLDEARAIFGMMPQK-DAVSWAAMLAA 426



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 103/223 (46%), Gaps = 22/223 (9%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K  +    FV N+L+  Y  CG + +A   F+E ++ DVVSWN+MI GY R+G   E 
Sbjct: 478 LIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYARHGFGKEA 537

Query: 62  LKLFDKM----PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLIS 112
           L++FD M     + +D++   +L      G V+     F  M +   V+     +  +I 
Sbjct: 538 LEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVATKPEHYTCMID 597

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKL 172
              + GR  EA+ L ++M     EP+S +  +LL A       + G        +K  +L
Sbjct: 598 LLGRAGRLDEAVNLMKDMP---FEPDSTMWGALLGASRIHRNSELGR----NAAEKIFEL 650

Query: 173 D---SILCAALIDMYAKCGS---IDLAMQVFHSYGDKDVSAYT 209
           +   + +   L ++YA  G    +D    + H  G K V  ++
Sbjct: 651 EPENAGMYVLLSNIYASSGKWRDVDKMRHIMHERGVKKVPGFS 693


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 204/471 (43%), Positives = 310/471 (65%)

Query: 41  DVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMP 100
           DVV   ++++ Y R G + +   +FDKM +R+  +WN+++ G  +   +  A ++F +M 
Sbjct: 44  DVVVQTALVHMYARCGSLEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMS 103

Query: 101 KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNW 160
           +R +VSW  +I+G+AQNG   E+L +F +M+   ++ +  I+ S+LSACA L AL+ G  
Sbjct: 104 ERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQ 163

Query: 161 VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGH 220
            ++Y+ +    LD ++ +AL+DMYAK GS++ A QVF     ++  ++ S I G A +G 
Sbjct: 164 FHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGR 223

Query: 221 SIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA 280
             +A  LFE M   GI P+ IS++ VLSACSH G V +G  YF+ M   +GI P++ HY 
Sbjct: 224 GNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYT 283

Query: 281 CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQN 340
           CM+DLLGRAG L+EAENFI  MP++PD  +WG LLGACR+H N E+ +RI   L+  +  
Sbjct: 284 CMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQ 343

Query: 341 HDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEK 400
             G Y+LLSNIY    + ++A +VRK M+ R + + PG S IE+  ++H F+AG+ SH +
Sbjct: 344 IAGIYVLLSNIYAAAGQWDDAAKVRKLMKDRGVMKQPGYSWIEVKTIMHAFVAGETSHPQ 403

Query: 401 TQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGS 460
            +EI++F E + +K+K  GY      V+ D+E++EKE  + +HSEKLA+AFG+I T PG+
Sbjct: 404 LKEIHEFLESLSRKMKAAGYVPNKNFVLQDVEDDEKELSLSHHSEKLAIAFGIINTNPGT 463

Query: 461 VIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            IR+ KN+R+C DCH+ +K +S  F RKI +RD   +HHF+DG CSC +YW
Sbjct: 464 TIRVAKNLRVCGDCHTVIKFISLNFTRKIVVRDANRFHHFKDGRCSCGDYW 514



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 106/218 (48%), Gaps = 33/218 (15%)

Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSID--- 191
           ++PN   L +++ ACA + +L+ G   ++YI K   + D ++  AL+ MYA+CGS++   
Sbjct: 6   VKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAG 65

Query: 192 ----------------------------LAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIE 223
                                        A+++F+   ++DV ++T+ I G A NG+  E
Sbjct: 66  HVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDE 125

Query: 224 AFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMV 283
           +  +F  M+  G+  D     +VLSAC+ L  +E G   FH+     G   ++   + +V
Sbjct: 126 SLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELG-RQFHAYVVQSGFALDIVVGSALV 184

Query: 284 DLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           D+  ++G +E+A      MP + + V W +++  C  H
Sbjct: 185 DMYAKSGSMEDACQVFDKMPQR-NEVSWNSIITGCAQH 221


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 212/510 (41%), Positives = 315/510 (61%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           + + S   DVF   +++  Y   G + +AR VFD   + + VSWN++I GYV+   + + 
Sbjct: 176 LFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQA 235

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
            +LF+ MP +N  SWN+++ G  + G +  A   F++MP+R  +SW  +I+G+AQ+G  +
Sbjct: 236 RELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGE 295

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
           EAL LF EM+      N +   S LS CA++ AL+ G  V+  + K  ++    +  AL+
Sbjct: 296 EALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALL 355

Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
            MY KCG+ID A  VF    +K+V ++ + I G A +G   EA  LFE+MK  GI PD +
Sbjct: 356 VMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDV 415

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
           + + VLSACSH G V+KG  YF+SM   +GI     HY CM+DLLGRAG L++A+N + +
Sbjct: 416 TMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKN 475

Query: 302 MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361
           MP +PD   WG LLGA R+H N E+G++   M+ E + ++ G Y+LLSN+Y  + +  + 
Sbjct: 476 MPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDV 535

Query: 362 EEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYN 421
             +R  MR R +K+ PG S +E+   +H F  GD  H +   IY F EE+  K+K  GY 
Sbjct: 536 GRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYV 595

Query: 422 VETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLV 481
             T+ V+ D+EEEEK  ++ YHSEKLA+AFG++    G  IR++KN+R+C DCH+AMK +
Sbjct: 596 SSTKLVLHDVEEEEKVHMLKYHSEKLAVAFGILAIPAGRPIRVIKNLRVCEDCHNAMKHI 655

Query: 482 SKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           SK+  R I +RD   +HHF  G CSC +YW
Sbjct: 656 SKIVGRLIILRDSHRFHHFNGGQCSCGDYW 685



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/257 (32%), Positives = 140/257 (54%), Gaps = 12/257 (4%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DV   N+++  Y+  G V++A+ +FDE    + +SWN M+  YV+NG I +  +LF+   
Sbjct: 60  DVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKA 119

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE 129
               +SWN ++GG V+   + DA  +F++MP+R  VSW  +ISG+AQNG   EA  LF E
Sbjct: 120 DWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEE 179

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
               D+        +++S   Q G LD    V+  + +K    +S+   A+I  Y +C  
Sbjct: 180 SPVRDV----FTWTAMVSGYVQNGMLDEARRVFDGMPEK----NSVSWNAIIAGYVQCKR 231

Query: 190 IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
           +D A ++F +   ++VS++ + I G A NG   +A   F+ M  +    DSIS+ A+++ 
Sbjct: 232 MDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQR----DSISWAAIIAG 287

Query: 250 CSHLGWVEKGFYYFHSM 266
            +  G+ E+  + F  M
Sbjct: 288 YAQSGYGEEALHLFVEM 304



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 135/293 (46%), Gaps = 21/293 (7%)

Query: 26  RVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVR 85
           R+R        S + D +  +  + G VR   +     LFD+MP+R+ VSWN++L G  +
Sbjct: 15  RLRSPPLQLHASPEFDFLERHD-LRGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQ 73

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
            G V +A  +F++MP ++ +SW  +++ + QNGR ++A  LF      +L         +
Sbjct: 74  NGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWEL---------I 124

Query: 146 LSACAQLGALDYGNWVYSY-IQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
              C   G +     V +  I  +  + D +    +I  YA+ G +  A ++F     +D
Sbjct: 125 SWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRD 184

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           V  +T+ + G   NG   EA  +F+ M  K    +S+S+ A+++       +++    F 
Sbjct: 185 VFTWTAMVSGYVQNGMLDEARRVFDGMPEK----NSVSWNAIIAGYVQCKRMDQARELFE 240

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
           +M         +  +  M+    + G + +A NF   MP + D++ W  ++  
Sbjct: 241 AM-----PCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQR-DSISWAAIIAG 287


>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g66520-like [Glycine max]
          Length = 622

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 231/512 (45%), Positives = 318/512 (62%), Gaps = 34/512 (6%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           VK     +VFV N+LI  Y   G V +++ VF  + D D+ SWN++I  YV +G +    
Sbjct: 142 VKVGLENNVFVVNALIGMYGKWGLVGESQKVFQWAVDRDLYSWNTLIAAYVGSGNMSLAK 201

Query: 63  KLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKE 122
           +LFD M +R+ VSW++I+ G V+ G                                  E
Sbjct: 202 ELFDGMRERDVVSWSTIIAGYVQVGCF-------------------------------ME 230

Query: 123 ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182
           AL  F +M  +  +PN   LVS L+AC+ L ALD G W+++YI K  IK++  L A++ID
Sbjct: 231 ALDFFHKMLQIGPKPNEYTLVSALAACSNLVALDQGKWIHAYIGKGEIKMNERLLASIID 290

Query: 183 MYAKCGSIDLAMQVFHSYGDKD-VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
           MYAKCG I+ A +VF  +  K  V  + + I G AM+G   EA  +FE MK + ISP+ +
Sbjct: 291 MYAKCGEIESASRVFFEHKVKQKVWLWNAMIGGFAMHGMPNEAINVFEQMKVEKISPNKV 350

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
           ++IA+L+ACSH   VE+G  YF  M   + I PE++HY CMVDLL R+GLL+EAE+ I+S
Sbjct: 351 TFIALLNACSHGYMVEEGKLYFRLMVSDYAITPEIEHYGCMVDLLSRSGLLKEAEDMISS 410

Query: 302 MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361
           MPM PD  IWG LL ACR++++ E G RIG ++   D NH G ++LLSNIY  + +   A
Sbjct: 411 MPMAPDVAIWGALLNACRIYKDMERGYRIGRIIKGMDPNHIGCHVLLSNIYSTSGRWNEA 470

Query: 362 EEVR-KTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGY 420
             +R K    R  K+ PGCS IEL G  H+FL GD+SH +++EIY F +E+  K+K+ GY
Sbjct: 471 RILREKNEISRDRKKIPGCSSIELKGTFHQFLVGDQSHPQSREIYSFLDEMTTKLKSAGY 530

Query: 421 NVETRSVMFDI-EEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMK 479
             E   ++ DI +EE+KET +  HSEKLA+AFGL+ T  G+ IRIVKN+R+C DCH A K
Sbjct: 531 VPELGELLHDIDDEEDKETALSVHSEKLAIAFGLMNTANGTPIRIVKNLRVCGDCHQATK 590

Query: 480 LVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            +SKV+ R I +RDR  YHHFEDG CSC +YW
Sbjct: 591 FISKVYNRVIIVRDRTRYHHFEDGICSCKDYW 622



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 120/283 (42%), Gaps = 35/283 (12%)

Query: 72  NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP-KEALALFREM 130
           + VS N +L  L    S+  A ++F+Q+P+  L  +  +I   + +      +L +FR +
Sbjct: 47  HPVSANKLLK-LAACASLSYAHKLFDQIPQPDLFIYNTMIKAHSLSPHSCHNSLIVFRSL 105

Query: 131 -QSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAK--- 186
            Q L L PN    V   SAC     +  G  V  +  K  ++ +  +  ALI MY K   
Sbjct: 106 TQDLGLFPNRYSFVFAFSACGNGLGVQEGEQVRIHAVKVGLENNVFVVNALIGMYGKWGL 165

Query: 187 ----------------------------CGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
                                        G++ LA ++F    ++DV ++++ I G    
Sbjct: 166 VGESQKVFQWAVDRDLYSWNTLIAAYVGSGNMSLAKELFDGMRERDVVSWSTIIAGYVQV 225

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDH 278
           G  +EA + F  M   G  P+  + ++ L+ACS+L  +++G  + H+      IK     
Sbjct: 226 GCFMEALDFFHKMLQIGPKPNEYTLVSALAACSNLVALDQG-KWIHAYIGKGEIKMNERL 284

Query: 279 YACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            A ++D+  + G +E A        +K    +W  ++G   +H
Sbjct: 285 LASIIDMYAKCGEIESASRVFFEHKVKQKVWLWNAMIGGFAMH 327


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 229/551 (41%), Positives = 326/551 (59%), Gaps = 41/551 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V   S   DV    +LI  Y+  G +R A+ +FDE    DVVSWN+MI+GY   G   E 
Sbjct: 123 VFDRSSHRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEA 182

Query: 62  LKLFDKMPQ--------------------------RNDVSW-------------NSILGG 82
           L+LF +M +                          R   SW             N+++  
Sbjct: 183 LELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDL 242

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G V+ AC +F  +  + +VSW  LI G+      KEAL LF+EM      PN   +
Sbjct: 243 YSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTI 302

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI--LCAALIDMYAKCGSIDLAMQVFHSY 200
           VS+L ACA LGA+D G W++ YI KK   + +   L  +LIDMYAKCG I+ A QVF+S 
Sbjct: 303 VSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSM 362

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
             K +S++ + IFG AM+G +   F+LF  M+  GI PD I+++ +LSACSH G ++ G 
Sbjct: 363 LHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGR 422

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
           + F SM   + I P+L+HY CM+DLLG +GL +EA+  I +MPM+PD VIW +LL ACR 
Sbjct: 423 HIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRR 482

Query: 321 HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS 380
           H N E+ +     L++ +  + G Y+LLSNIY    + +   +VR  +  + +K+ PGCS
Sbjct: 483 HGNLELAESFARNLMKVEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMKKVPGCS 542

Query: 381 LIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVI 440
            IE+D  VHEF+ GD+ H + +EIY   EE+   ++  G+  +T  V+ ++EEE KE  +
Sbjct: 543 SIEIDSEVHEFIVGDKLHPRNREIYGMLEEMEALLEEAGFVPDTSEVLQEMEEEWKEGAL 602

Query: 441 GYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF 500
            +HSEKLA+AFGLI TKPG+ + IVKN+R+C +CH A KLVSK++KR+I  RDR  +HHF
Sbjct: 603 RHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLVSKIYKREIIARDRTRFHHF 662

Query: 501 EDGSCSCLEYW 511
            DG CSC ++W
Sbjct: 663 RDGVCSCNDFW 673



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 157/291 (53%), Gaps = 8/291 (2%)

Query: 41  DVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMP 100
           D+    S+I+ Y +NG + +  K+FD+   R+ VS+ +++ G    G++  A  +F+++P
Sbjct: 100 DLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALITGYASSGNIRSAQEMFDEIP 159

Query: 101 KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNW 160
            + +VSW  +ISG+A+ G  KEAL LF+EM   ++ P+   +V++LSACAQ  +++ G  
Sbjct: 160 VKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQ 219

Query: 161 VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGH 220
           V+S+I       +  +  ALID+Y+KCG ++ A  +F     KDV ++ + I G      
Sbjct: 220 VHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNL 279

Query: 221 SIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG----FYYFHSMFDVHGIKPEL 276
             EA  LF+ M   G SP+ ++ +++L AC+HLG ++ G     Y    + DV    P L
Sbjct: 280 YKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTN-APSL 338

Query: 277 DHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMG 327
                ++D+  + G +E A     SM  K  +  W  ++    +H  A  G
Sbjct: 339 R--TSLIDMYAKCGDIEAAHQVFNSMLHKSLSS-WNAMIFGFAMHGRANAG 386



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 115/257 (44%), Gaps = 33/257 (12%)

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           A  VF  + + + + W  ++ G+A +  P  AL L+  M SL L PNS     LL +CA+
Sbjct: 19  AISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAK 78

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSA 211
             A + G  ++ ++ K   + D  +  +LI MYA+ G ++ A +VF     +DV +YT+ 
Sbjct: 79  SKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTAL 138

Query: 212 IFGLAMNGH-------------------------------SIEAFELFENMKSKGISPDS 240
           I G A +G+                                 EA ELF+ M    + PD 
Sbjct: 139 ITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDE 198

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
            + + VLSAC+    VE G    HS  D HG    L     ++DL  + G +E A     
Sbjct: 199 GTMVTVLSACAQSRSVELG-RQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFE 257

Query: 301 SMPMKPDNVIWGTLLGA 317
            +  K D V W TL+G 
Sbjct: 258 GLSCK-DVVSWNTLIGG 273


>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
 gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 606

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 212/523 (40%), Positives = 329/523 (62%), Gaps = 30/523 (5%)

Query: 9   YDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM 68
           YD F+ N+LI+ Y+  G  +D           D +  N     +V       GL++ +  
Sbjct: 94  YDAFLFNTLIRAYAQTGHSKDKALALYGIMLHDAILPNKFTYPFVLKA--CAGLEVLN-- 149

Query: 69  PQRNDVSWNSILGGLVRFG--------------------SVDDACRVFNQMPKRSLVSWV 108
                    ++ G +V+FG                     ++ A +VF++MPK   V+W 
Sbjct: 150 ------LGQTVHGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMPKSDSVTWS 203

Query: 109 VLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKK 168
            +I G+A+ GR  EA+ALFREMQ  ++ P+   +VS+LSAC  LGAL+ G W+ +YI++ 
Sbjct: 204 AMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELGKWIEAYIERH 263

Query: 169 CIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELF 228
            I     +  ALIDM+AKCG I  A+++F +  +K + ++TS I G+AM+G   EA  LF
Sbjct: 264 EIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMHGRGQEATCLF 323

Query: 229 ENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGR 288
           E M S G++PD +++I +LSACSH G VE+G  YF SM   + + P+++HY CMVD+  R
Sbjct: 324 EEMTSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMMKKYKLVPKIEHYGCMVDMYCR 383

Query: 289 AGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILL 348
            GL++EA  F+ +MP++P+ VI  TL+ ACR H   ++G++I  +L++ +  H+  Y+LL
Sbjct: 384 TGLVKEALEFVRNMPIEPNPVILRTLVSACRGHGEFKLGEKITKLLMKHEPLHESNYVLL 443

Query: 349 SNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFW 408
           SNIY +TL  E   ++R+ M  + +K+ PG ++IE+D  ++EF+AGD+SH++ +EIY+  
Sbjct: 444 SNIYAKTLSWEKKTKIREVMEVKGMKKVPGSTMIEIDNEIYEFVAGDKSHKQHKEIYEMV 503

Query: 409 EEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNI 468
           +E+ +++K  GY   T  V+ DI EE+KE  +  HSEKLA+AFGL+ T PG+ IRIVKN+
Sbjct: 504 DEMGREMKKSGYRPSTSEVLLDINEEDKEDSLNRHSEKLAIAFGLLRTPPGTPIRIVKNL 563

Query: 469 RICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           R+CSDCHSA K +SK++ R+I +RDR  +HHF+ G CSC ++W
Sbjct: 564 RVCSDCHSASKFISKIYDREIIMRDRNRFHHFKSGQCSCGDFW 606



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 113/237 (47%), Gaps = 45/237 (18%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVC-GRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           VVK  F  D+ V+N+++  YS C G +  AR VFDE    D V+W++MI GY R G   E
Sbjct: 158 VVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMPKSDSVTWSAMIGGYARVGRSTE 217

Query: 61  GLKLFDKMP----------------------------------QRNDVS-----WNSILG 81
            + LF +M                                   +R+++       N+++ 
Sbjct: 218 AVALFREMQMAEVCPDEITMVSMLSACTDLGALELGKWIEAYIERHEIHKPVEVSNALID 277

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G +  A ++F  M ++++VSW  +I G A +GR +EA  LF EM S  + P+   
Sbjct: 278 MFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMHGRGQEATCLFEEMTSSGVAPDDVA 337

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKK---CIKLDSILCAALIDMYAKCGSIDLAMQ 195
            + LLSAC+  G ++ G   +  + KK     K++   C  ++DMY + G +  A++
Sbjct: 338 FIGLLSACSHSGLVERGREYFGSMMKKYKLVPKIEHYGC--MVDMYCRTGLVKEALE 392


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 217/550 (39%), Positives = 331/550 (60%), Gaps = 40/550 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +V+     +  V  SL+  Y+ CG +  AR +FD   + +VV+W  +I GY + G++   
Sbjct: 174 IVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVA 233

Query: 62  LKLFDKMPQ----RNDVSWNSILGGLV--------------------------------- 84
           L+L + M Q     N +++ SIL G                                   
Sbjct: 234 LELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITM 293

Query: 85  --RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G +++A ++F+ +P R +V+W  +++G+AQ G   EA+ LFR MQ   ++P+    
Sbjct: 294 YCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTF 353

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S+L++C+    L  G  ++  +      LD  L +AL+ MYAKCGS+D A  VF+   +
Sbjct: 354 TSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSE 413

Query: 203 KDVSAYTSAIFGL-AMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
           ++V A+T+ I G  A +G   EA E F+ MK +GI PD +++ +VLSAC+H+G VE+G  
Sbjct: 414 RNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRK 473

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           +F SM+  +GIKP ++HY+C VDLLGRAG LEEAEN I SMP  P   +WG LL ACRVH
Sbjct: 474 HFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSACRVH 533

Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
            + E G+R    +++ D + DG Y+ LS+IY    + E+AE+VR+ M KR + + PG S 
Sbjct: 534 SDVERGERAAENVLKLDPDDDGAYVALSSIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSW 593

Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIG 441
           IE+DG VH F   D+SH ++++IY    ++ ++IK  GY  +TR V+ D++EE+KE ++ 
Sbjct: 594 IEVDGKVHVFHVEDKSHPESEQIYVELGKLTEQIKEMGYVPDTRFVLHDVDEEQKERILF 653

Query: 442 YHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
            HSE+LA+ +GL+ T PG  IRIVKN+R+C DCH+A K +SKV  R+I  RD + +HHF 
Sbjct: 654 SHSERLAITYGLMKTPPGMPIRIVKNLRVCGDCHTATKFISKVVGREIIARDAQRFHHFA 713

Query: 502 DGSCSCLEYW 511
           DG CSC ++W
Sbjct: 714 DGVCSCGDFW 723



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 174/356 (48%), Gaps = 41/356 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K+    + +++N+L+  Y+ CG + DAR VFD   D ++VSW +MI  +V   + LE 
Sbjct: 73  ILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEA 132

Query: 62  LKLFDKMP----QRNDVSW-----------------------------------NSILGG 82
            K ++ M     + + V++                                    S++G 
Sbjct: 133 FKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGM 192

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G +  A  +F+++P++++V+W +LI+G+AQ G+   AL L   MQ  ++ PN    
Sbjct: 193 YAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITF 252

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S+L  C    AL++G  V+ YI +     +  +  +LI MY KCG ++ A ++F     
Sbjct: 253 ASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPH 312

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           +DV  +T+ + G A  G   EA  LF  M+ +GI PD +++ +VL++CS   ++++G   
Sbjct: 313 RDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEG-KR 371

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
            H      G   ++   + +V +  + G +++A      M  + + V W  ++  C
Sbjct: 372 IHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSER-NVVAWTAIITGC 426



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 107/207 (51%), Gaps = 3/207 (1%)

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCI 170
           +S   + GR KEAL +   M        S +   LL  CA+L +L+ G  V++ I K  I
Sbjct: 19  VSVLCKTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGI 78

Query: 171 KLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFEN 230
           + +  L   L+ MYAKCGS+  A +VF S  D+++ ++T+ I        ++EAF+ +E 
Sbjct: 79  QPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYET 138

Query: 231 MKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAG 290
           MK  G  PD ++++++L+A ++   ++ G      + +  G++ E      +V +  + G
Sbjct: 139 MKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEA-GLELEPRVGTSLVGMYAKCG 197

Query: 291 LLEEAENFIASMPMKPDNVIWGTLLGA 317
            + +A      +P K  NV+  TLL A
Sbjct: 198 DISKARVIFDRLPEK--NVVTWTLLIA 222


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 212/541 (39%), Positives = 328/541 (60%), Gaps = 37/541 (6%)

Query: 7   FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFD 66
           +++D +V    I  YS CG+++ A  +F E    D+V++N+MI+GY  NGE    L LF 
Sbjct: 253 YSHD-YVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFK 311

Query: 67  KM----------------P----------------QRNDVSWNSILGGLV----RFGSVD 90
           ++                P                + N +S  S+   L     +   ++
Sbjct: 312 ELMLSGAKLKSSTLVSLVPVSGHLMLIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIE 371

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
            A ++F++ P++SL SW  +ISG+ QNG  ++A++LFREMQ+ +  PN   +  +LSACA
Sbjct: 372 SARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACA 431

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
           QLGAL  G WV+  ++    +    +  ALI MYAKCGSI  A ++F     K+   + +
Sbjct: 432 QLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVTWNT 491

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I G  ++GH  EA  +F  M + GI+P  ++++ VL ACSH G V++G   F+SM   +
Sbjct: 492 MISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRY 551

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
           G +P + HYAC+VD+LGRAG L+ A  FI +MP++P   +W TLLGACR+H++  + + +
Sbjct: 552 GFEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQPGPSVWETLLGACRIHKDTNLARTV 611

Query: 331 GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHE 390
              L E D ++ G ++LLSNI+        A  VR+T +KRK+ +APG +LIE+    H 
Sbjct: 612 SEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHV 671

Query: 391 FLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALA 450
           F +GD+SH + + I++  E++  K++  GY  ET   + D+EEEE+E ++  HSE+LA+A
Sbjct: 672 FTSGDQSHPQVKAIHEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIA 731

Query: 451 FGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEY 510
           FGLI T+PG+ IRI+KN+R+C DCH+A KL+SK+ +R I +RD   +HHF+DG CSC +Y
Sbjct: 732 FGLIATEPGTEIRIIKNLRVCLDCHTATKLISKITERVIVVRDANRFHHFKDGVCSCGDY 791

Query: 511 W 511
           W
Sbjct: 792 W 792



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 128/287 (44%), Gaps = 43/287 (14%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +K++F     V  +L   YS    +  AR +FDES +  + SWN+MI+GY +NG   + +
Sbjct: 346 LKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAI 405

Query: 63  KLFDKMPQRNDVSWNSI-----------LGGL---------------------------- 83
            LF +M Q ++ S N +           LG L                            
Sbjct: 406 SLFREM-QNSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGM 464

Query: 84  -VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + GS+ +A R+F+ MPK++ V+W  +ISG+  +G  +EAL +F EM +  + P     
Sbjct: 465 YAKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTF 524

Query: 143 VSLLSACAQLGALDYGNWVY-SYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           + +L AC+  G +  G+ ++ S I +   +      A ++D+  + G +  A+Q   +  
Sbjct: 525 LCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQFIEAMP 584

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248
            +   +    + G A   H         + K   + PD++ Y  +LS
Sbjct: 585 IQPGPSVWETLLG-ACRIHKDTNLARTVSEKLFELDPDNVGYHVLLS 630



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 95/427 (22%), Positives = 172/427 (40%), Gaps = 83/427 (19%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +V + F  D+ +   L Q  S  G +  AR +F      DV  +N ++ G+  N      
Sbjct: 43  IVLHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSS 102

Query: 62  LKLFDKMPQRNDVSWNS-----------------------------------ILGGLV-- 84
           L +F  + +  D+  NS                                   +LG  +  
Sbjct: 103 LAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGCVIHGQAIVDGCDSELLLGSNIVK 162

Query: 85  ---RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD-LEPNSA 140
              +F  V+DA +VF++MP++  + W  +ISG+ +N    E++ +FR++ +      ++ 
Sbjct: 163 MYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTT 222

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKK-CIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
            L+ +L A A+L  L  G  ++S   K  C   D +L    I +Y+KCG I +A  +F  
Sbjct: 223 TLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVL-TGFISLYSKCGKIKMASTLFRE 281

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL------ 253
           +   D+ AY + I G   NG +  +  LF+ +   G    S + ++++    HL      
Sbjct: 282 FRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGHLMLIYAI 341

Query: 254 -GWVEKGFYYFHS---------------------MFDVHGIKPELDHYACMVDLLGRAGL 291
            G+  K  +  H+                     +FD    +  L  +  M+    + GL
Sbjct: 342 HGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFD-ESPEKSLPSWNAMISGYTQNGL 400

Query: 292 LEEAENFIASMP---MKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILL 348
            E+A +    M      P+ V    +L AC       +G+ + +++  +D          
Sbjct: 401 TEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTD--------FE 452

Query: 349 SNIYVET 355
           S+IYV T
Sbjct: 453 SSIYVST 459



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 12/158 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V    F   ++V  +LI  Y+ CG + +AR +FD     + V+WN+MI+GY  +G   E
Sbjct: 445 LVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQE 504

Query: 61  GLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLI 111
            L +F +M         V++  +L      G V +   +FN M  R     S+  +  ++
Sbjct: 505 ALTIFSEMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACVV 564

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
               + G  + AL     ++++ ++P  ++  +LL AC
Sbjct: 565 DILGRAGHLQRALQF---IEAMPIQPGPSVWETLLGAC 599


>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
          Length = 668

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 217/515 (42%), Positives = 323/515 (62%), Gaps = 8/515 (1%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VVK     DVF++N LI FY+ CG +     VF+   + +VVSW S+I GY R     E 
Sbjct: 157 VVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEA 216

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
           + LF +M   N V  N+++   ++ G++D A R+F++   R+LV +  ++S +A+ G  +
Sbjct: 217 VSLFFEM--LNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAR 274

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQL-----GALDYGNWVYSYIQKKCIKLDSIL 176
           EALA+  EM      P+   ++S +SA AQL     G + +G WV++YI+K  I  D  L
Sbjct: 275 EALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYWVHTYIEKNGIPCDMRL 334

Query: 177 CAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGI 236
             AL+DM+A+CG    AMQVF+   ++DVSA+T+AI  +AM G+   A  LF  M  +G+
Sbjct: 335 NTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGV 394

Query: 237 SPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAE 296
            PD + ++ VL+ACSH G VE+G + F  M D HGI P+++HY CMVDLLGRAGLL EA 
Sbjct: 395 KPDVVLFVQVLTACSHGGQVEQGLHIFSLMED-HGISPQIEHYGCMVDLLGRAGLLREAF 453

Query: 297 NFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETL 356
           + I SMPM+P++V+WG+LL ACRVH+N EM       + E      G ++LLSNIY    
Sbjct: 454 DLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAG 513

Query: 357 KGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIK 416
           K  +   VR  +R++ +++ PG S ++++GV+HEF +GD SH +   I    +E+  +  
Sbjct: 514 KWTDVARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESHPEMTHIALMLQEMNCRFS 573

Query: 417 NYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHS 476
           + G+  +  +V+ D++E+EKE ++  HSEKLA+AFGLI T     IR+VKN+R+CSDCHS
Sbjct: 574 DAGHIPDLSNVLLDVDEQEKEYLLSRHSEKLAIAFGLIATGRSMPIRVVKNLRMCSDCHS 633

Query: 477 AMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
             K+ S ++ R+I +RD   +H F  G CSC +YW
Sbjct: 634 FAKMASIIYNREIIVRDNNRFHFFRQGLCSCCDYW 668



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 63/125 (50%)

Query: 110 LISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC 169
           LI G++  G  +EA+ L+  M  L + PN      +LS C ++ A   G  V+  + K  
Sbjct: 102 LIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVKMG 161

Query: 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFE 229
           ++ D  +   LI  YA+CG +D   +VF    +++V ++TS I G A      EA  LF 
Sbjct: 162 LEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFF 221

Query: 230 NMKSK 234
            M +K
Sbjct: 222 EMLNK 226


>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
 gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/522 (41%), Positives = 324/522 (62%), Gaps = 40/522 (7%)

Query: 30  ARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRN----DVSWNSILGGLV- 84
           A  +F+     D+V +NSM  GY R+   L+ + LF K    N    D ++ S+L   V 
Sbjct: 80  AHQLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLLKACVV 139

Query: 85  ---------------RFG-------------------SVDDACRVFNQMPKRSLVSWVVL 110
                          + G                    VD A RVF+++ +  +VS+  +
Sbjct: 140 AKAFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVVSYNAI 199

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCI 170
           I+G+A++ RP EAL+LFR++Q+  L+PN   ++S+LS+CA LGALD G W++ Y++K  +
Sbjct: 200 ITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLGKWIHEYVKKNGL 259

Query: 171 KLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFEN 230
                +  ALIDMYAKCGS+D A+ VF S   +D  A+++ I   AM+G   +   +FE 
Sbjct: 260 DKYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWSAMIVAYAMHGQGQDVMSMFEE 319

Query: 231 MKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAG 290
           M    + PD I+++ +L ACSH G V++GF YF+SM +V+GI P + HY CMVDLLGRAG
Sbjct: 320 MARAKVQPDEITFLGLLYACSHTGLVDEGFRYFYSMSEVYGIIPGIKHYGCMVDLLGRAG 379

Query: 291 LLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSN 350
           LL EA  FI  +P+KP  ++W TLL +C  H N E+ +++ N ++E D +H G Y++LSN
Sbjct: 380 LLHEAYKFIDELPIKPTPILWRTLLSSCSSHGNLELAKQVMNQILELDDSHGGDYVILSN 439

Query: 351 IYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEE 410
           +     K E+ + +RK M  +   + PGCS IE+D VVHEF +GD  H  +  +++  +E
Sbjct: 440 LCARAGKWEDVDTLRKLMIHKGAVKIPGCSSIEVDNVVHEFFSGDGVHYVSTALHRALDE 499

Query: 411 IVKKIKNYGYNVETRSVMF-DIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIR 469
           +VK++K+ GY  +T  V+  D+E+EEKE  + YHSEKLA++FGL+ T PG+ IR+VKN+R
Sbjct: 500 LVKELKSVGYVPDTSLVVHPDMEDEEKEITLRYHSEKLAISFGLLNTPPGTTIRVVKNLR 559

Query: 470 ICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           +C DCHSA KL+S +  R+I +RD + +HHF+DG CSC +YW
Sbjct: 560 VCGDCHSAAKLISSLIDREIILRDVQRFHHFKDGKCSCGDYW 601



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 127/250 (50%), Gaps = 5/250 (2%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
            S+D A ++F  +P+  +V +  +  G++++  P +A++LF +  + +L P+     SLL
Sbjct: 75  ASMDYAHQLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLL 134

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
            AC    A   G  ++    K  +  +  +C  LI+MYA C  +D A +VF    +  V 
Sbjct: 135 KACVVAKAFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVV 194

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
           +Y + I G A +    EA  LF  ++++ + P+ ++ ++VLS+C+ LG ++ G  + H  
Sbjct: 195 SYNAIITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLG-KWIHEY 253

Query: 267 FDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEM 326
              +G+   +     ++D+  + G L+ A +   SM ++ D   W  ++ A  +H     
Sbjct: 254 VKKNGLDKYVKVNTALIDMYAKCGSLDGAISVFESMSVR-DTQAWSAMIVAYAMHGQ--- 309

Query: 327 GQRIGNMLIE 336
           GQ + +M  E
Sbjct: 310 GQDVMSMFEE 319


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 212/513 (41%), Positives = 318/513 (61%), Gaps = 3/513 (0%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VV  SF +    K    +     GR    + +       D+   NSMI+ Y++ G +  G
Sbjct: 142 VVPVSFTFTALFKACGAKMDVGLGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECG 201

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
            K+FD+MP R+ +SW  ++   V+ G+++ A  +F+ +P + +V+W V++SGFAQN +P+
Sbjct: 202 RKVFDEMPNRDVISWTELISAYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPR 261

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCI--KLDSILCAA 179
           EA+  F +MQ   +E +   L+ ++SACAQLGA  Y +W+    +K     K   ++ +A
Sbjct: 262 EAIMFFEKMQEFGVETDEITLIGVISACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSA 321

Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
           LIDMY+KCGS+  A +VF    +++V +Y+S I G AM+G   +A +LF+ M    I P+
Sbjct: 322 LIDMYSKCGSVGDAYRVFQGMKERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPN 381

Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI 299
            +++I VL+ACSH G VE+G+  F  M   +GIKP  DHY CMVDLLGRAG L+EA   +
Sbjct: 382 RVTFIGVLTACSHAGMVEQGWQIFELMEKCYGIKPSADHYTCMVDLLGRAGRLQEAHELV 441

Query: 300 ASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGE 359
            +MP++P   +WG LLGACR+H++ ++     N L E +    G YILL+NIY    +  
Sbjct: 442 KTMPIEPHGGVWGALLGACRIHKSPDIAAIAANHLFELEPYCIGNYILLANIYASCGRWN 501

Query: 360 NAEEVRKTMRKRKIKRAPGCSLIELD-GVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNY 418
           +   VRK MR R +++ P  S IE + G+VHEF +GD +H ++ EI Q  E+++ +++  
Sbjct: 502 DVSTVRKLMRTRGLRKNPAFSWIESEKGMVHEFFSGDMTHPRSGEIKQALEDLLDRLEAK 561

Query: 419 GYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAM 478
           GY     SV +D+ +E+K  ++  HSEKLALAFGLI T PGS IRIVKN+RIC DCHS +
Sbjct: 562 GYQPHLSSVSYDVNDEDKRRILMTHSEKLALAFGLISTIPGSKIRIVKNLRICEDCHSVI 621

Query: 479 KLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
              S++  R+I +RD   +HHF DG CSC  +W
Sbjct: 622 CGASQITGREIIVRDIMRFHHFHDGICSCGNFW 654



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 78/196 (39%), Gaps = 40/196 (20%)

Query: 95  VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA---- 150
           +FNQ+   +   +  LI G+    R KE+   +  M+   + P S    +L  AC     
Sbjct: 102 IFNQVNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMD 161

Query: 151 --------------------------------QLGALDYGNWVYSYIQKKCIKLDSILCA 178
                                           + G L+ G  V+  +  +    D I   
Sbjct: 162 VGLGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNR----DVISWT 217

Query: 179 ALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISP 238
            LI  Y K G+++ A ++F     KD+ A+T  + G A N    EA   FE M+  G+  
Sbjct: 218 ELISAYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVET 277

Query: 239 DSISYIAVLSACSHLG 254
           D I+ I V+SAC+ LG
Sbjct: 278 DEITLIGVISACAQLG 293


>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
          Length = 665

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 201/466 (43%), Positives = 315/466 (67%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N++++ Y   G++     LF+ M  R+  SW S++ GLVR G VD A  +F+ MP+R  +
Sbjct: 200 NALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRARDLFDHMPERDTI 259

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           +W  +I G+ Q GR ++AL  FR MQ   +  +   +VS+++ACAQLGAL+ G W   Y+
Sbjct: 260 AWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQLGALETGEWARIYM 319

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
            +  IK+D  +  ALIDMY+KCGSI+ A+ VF    ++D   +T+ I GLA+NG   EA 
Sbjct: 320 GRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILGLAVNGRGEEAI 379

Query: 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL 285
           ++F  M     +PD ++++ VL+AC+H G V+KG  +F SM + + I P + HY C++D+
Sbjct: 380 DMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNISPTVVHYGCLIDV 439

Query: 286 LGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRY 345
           LGRAG L+EA + I  MPMKP++ IWGTLL +CRV+ N+E+G+     L+E D ++   Y
Sbjct: 440 LGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSEIGELAAERLLELDPDNSTAY 499

Query: 346 ILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIY 405
           ILLSN+Y ++ + ++   +R+ + ++ IK+ PGCS+IE++G++HEF+A DRSH   +EIY
Sbjct: 500 ILLSNMYAKSNRWKDVRRIRQIIMEKGIKKEPGCSMIEMNGIIHEFVAADRSHPMNKEIY 559

Query: 406 QFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIV 465
              E ++  ++N GY  +   V+ ++ EEEK+ V+ +HSEKLA+ F L+ ++   +IRIV
Sbjct: 560 SKLENVLTDLRNAGYVPDVTEVLVEVTEEEKQKVLYWHSEKLAVTFALLTSESNVIIRIV 619

Query: 466 KNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           KN+R+C DCH+A+KL+SK++ R++ +RDR  +HHF  GSCSC +YW
Sbjct: 620 KNLRMCLDCHNAIKLISKLYGREVIVRDRTRFHHFRHGSCSCKDYW 665



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 111/252 (44%), Gaps = 33/252 (13%)

Query: 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSY 164
           V W  LISG  ++GR + +   F +M        +   VS+LSAC +   L  G  V+  
Sbjct: 127 VMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKR 186

Query: 165 IQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEA 224
           + +  +  D  +  AL+DMYA+CG +D A  +F     + ++++TS I GL  +G    A
Sbjct: 187 VLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRA 246

Query: 225 FELFENMKSKG-------------------------------ISPDSISYIAVLSACSHL 253
            +LF++M  +                                +  D  + ++V++AC+ L
Sbjct: 247 RDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQL 306

Query: 254 GWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGT 313
           G +E G +    M  + GIK ++     ++D+  + G +E A +    M  + D   W  
Sbjct: 307 GALETGEWARIYMGRL-GIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNR-DKFTWTA 364

Query: 314 LLGACRVHRNAE 325
           ++    V+   E
Sbjct: 365 IILGLAVNGRGE 376


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 217/549 (39%), Positives = 334/549 (60%), Gaps = 40/549 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           + +  F  DVFV+N L+  Y+ CGRV  AR VF+  DD ++VSW SMI+GY +NG  +E 
Sbjct: 195 IFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEA 254

Query: 62  LKLFDKMPQRN-DVSWNSILGGLVRFGSVDD--------ACRV----------------- 95
           L++F +M QRN    W +++  L  +  V+D         C V                 
Sbjct: 255 LRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAM 314

Query: 96  -------------FNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
                        F+QM   +++ W  +ISG+A+NG   EA+ LF+EM S ++  +S  +
Sbjct: 315 YAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITV 374

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S + ACAQ+G+LD   W+  YI K   + D  +  ALIDM+AKCGS+DLA +VF    D
Sbjct: 375 RSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLD 434

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           KDV  +++ I G  ++G   +A +LF  MK  G+ P+ ++++ +L+AC+H G VE+G+  
Sbjct: 435 KDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGLVEEGWEL 494

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           FHSM   +GI+    HYAC+VDLLGR+G L EA +FI +MP++P   +WG LLGAC+++R
Sbjct: 495 FHSM-KYYGIEARHQHYACVVDLLGRSGHLNEAYDFITTMPIEPGVSVWGALLGACKIYR 553

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           +  +G+     L   D  + G Y+ LSN+Y  +   ++  +VR  MR++ + +  G SLI
Sbjct: 554 HVTLGEYAAEQLFSLDPFNTGHYVQLSNLYASSRLWDSVAKVRILMREKGLSKDLGYSLI 613

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E++G +  F  GD+SH + +EI++  E + +++K  G+     SV+ D+ +EEKE  +  
Sbjct: 614 EINGKLQAFRVGDKSHPRFKEIFEELESLERRLKEAGFIPHIESVLHDLNQEEKEETLCN 673

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSE+LA+A+GLI T PG+ +RI KN+R C +CHSA KL+SK+  R+I +RD   +HHF++
Sbjct: 674 HSERLAIAYGLISTAPGTTLRITKNLRACINCHSATKLISKLVNREIVVRDANRFHHFKN 733

Query: 503 GSCSCLEYW 511
           G CSC +YW
Sbjct: 734 GVCSCRDYW 742



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 123/243 (50%), Gaps = 10/243 (4%)

Query: 73  DVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQS 132
           + SWN         G +  A +VF++ P+ S+  W  +I G++ +    +A+ ++  MQ+
Sbjct: 111 NASWN--------IGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQA 162

Query: 133 LDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDL 192
             + P+   L  +L AC+ +  L+ G  V+  I +   + D  +   L+ +YAKCG ++ 
Sbjct: 163 SGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQ 222

Query: 193 AMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSH 252
           A  VF    D+++ ++TS I G   NG  +EA  +F  M+ + + PD I+ ++VL A + 
Sbjct: 223 ARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTD 282

Query: 253 LGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWG 312
           +  +E+G    H      G++ E D    +  +  + G +  A +F   M + P+ ++W 
Sbjct: 283 VEDLEQG-KSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEI-PNVMMWN 340

Query: 313 TLL 315
            ++
Sbjct: 341 AMI 343


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 232/582 (39%), Positives = 332/582 (57%), Gaps = 72/582 (12%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDES------------------------ 37
           V+K  +  D+FV  SLI  Y   GR+ DAR VFD S                        
Sbjct: 160 VLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYASRGYIESA 219

Query: 38  ----DDL---DVVSWNSMINGYVRNGEILEGLKLFDKMPQ-------------------- 70
               D++   DVVSWN+MI+GY   G   E L+LF +M +                    
Sbjct: 220 QKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQS 279

Query: 71  ------RNDVSW-------------NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLI 111
                 R   SW             NS++    + G ++ AC +F  +  + ++SW  LI
Sbjct: 280 GSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLI 339

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK--KC 169
            G+      KEAL LF+EM      PN   ++S+L ACA LGA+D G W++ YI K  K 
Sbjct: 340 GGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKS 399

Query: 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFE 229
               S L  +LIDMYAKCG I+ A QVF+S   K +S++ + IFG AM+G +  AF++F 
Sbjct: 400 ATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFS 459

Query: 230 NMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRA 289
            M+  GI PD I+++ +LSACS  G ++ G + F +M   + I P+L+HY CM+DLLG +
Sbjct: 460 RMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHS 519

Query: 290 GLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLS 349
           GL +EAE  I +M M+PD VIW +LL AC++  N E+G+     LI+ +  + G Y+LLS
Sbjct: 520 GLFKEAEEMINNMEMEPDGVIWCSLLKACKIRGNVELGESFAQNLIKIEPENPGCYVLLS 579

Query: 350 NIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWE 409
           NIY    +     ++R  +  + +K+ PGCS IE+D VVHEF+ GD+ H + +EIY   E
Sbjct: 580 NIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLE 639

Query: 410 EIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIR 469
           E+   ++  G+  +T  V+ ++EEE KE  + +HSEKLA+AFGLI TKPG+ + IVKN+R
Sbjct: 640 EMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLR 699

Query: 470 ICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           +C +CH A KL+SK++KR+I  RDR  +HHF DG CSC +YW
Sbjct: 700 VCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 114/263 (43%), Gaps = 33/263 (12%)

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
           F  +  A  VF  + + +L+ W  +  G A +  P  AL L+  M SL L PNS     L
Sbjct: 81  FDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFL 140

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
           L +CA+  A   G  ++ ++ K    LD  +  +LI +Y + G ++ A +VF     +DV
Sbjct: 141 LKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDV 200

Query: 206 SAYT-------------------------------SAIFGLAMNGHSIEAFELFENMKSK 234
            +YT                               + I G A  G+  EA ELF+ M   
Sbjct: 201 VSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKT 260

Query: 235 GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEE 294
            I PD  + + V+SAC+  G +E G    HS  D HG    L     ++DL  + G LE 
Sbjct: 261 NIRPDESTMVTVVSACAQSGSIELG-RQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELET 319

Query: 295 AENFIASMPMKPDNVIWGTLLGA 317
           A      +  K D + W TL+G 
Sbjct: 320 ACGLFEGLLYK-DVISWNTLIGG 341


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 226/551 (41%), Positives = 324/551 (58%), Gaps = 41/551 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V   S   DV    +LI  Y+  G +  A+ +FDE    DVVSWN++I+GY   G   E 
Sbjct: 160 VFDGSSHRDVVSYTALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEA 219

Query: 62  LKLFDKMPQRNDV--------------------------SW-------------NSILGG 82
           L LF +M + N                            SW             N+++  
Sbjct: 220 LDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDL 279

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G V+ AC +F  +  + ++SW  +I G+      KEAL LF+EM      PN   +
Sbjct: 280 YSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTM 339

Query: 143 VSLLSACAQLGALDYGNWVYSYIQK--KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
           +S+L ACAQLGA+D+G W++ YI K  K +   S L  +LIDMYAKCG I+ A QVF+S 
Sbjct: 340 LSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSM 399

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
             + +SA  + IFG AM+G +  AF++F  M+  GI PD I+++ +LSACSH G ++ G 
Sbjct: 400 HHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGR 459

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
             F SM   + I P+L+HY CM+DLLG  GL +EAE  I +M M+PD VIW +LL AC++
Sbjct: 460 RIFRSMTQNYKITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKM 519

Query: 321 HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS 380
           H N E+G+     LI+ +  + G Y+LLSNIY    +      +R  +  + +K+ PGCS
Sbjct: 520 HGNVELGESFAQKLIKIEPENPGSYVLLSNIYATAGRWNEVANIRALLNDKGMKKVPGCS 579

Query: 381 LIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVI 440
            IE+D VVHEF+ GD+ H + +EIY   EE+   ++  G+  +T  V+ ++EEE K+  +
Sbjct: 580 SIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEFKQGAL 639

Query: 441 GYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF 500
            +HSEKLA+AFGLI TKPG+ + IVKN+R+C +CH A KL+SK++KR+I  RDR  +HHF
Sbjct: 640 RHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHF 699

Query: 501 EDGSCSCLEYW 511
            DG CSC +YW
Sbjct: 700 RDGVCSCNDYW 710



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 84/266 (31%), Positives = 152/266 (57%), Gaps = 3/266 (1%)

Query: 39  DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQ 98
           +LD+    S+I+ YV+NG   +  K+FD    R+ VS+ +++ G    G ++ A ++F++
Sbjct: 135 ELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGYIESAQKMFDE 194

Query: 99  MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
           +P + +VSW  +ISG+A  G  KEAL LF+EM   +++P+ + +V+++SACAQ G++  G
Sbjct: 195 IPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLG 254

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
             V+S+I    +  +  +  ALID+Y+KCG ++ A  +F    +KDV ++ + I G    
Sbjct: 255 RQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHL 314

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD--VHGIKPEL 276
               EA  LF+ M   G +P+ ++ +++L AC+ LG ++ G  + H   D  + G+    
Sbjct: 315 NLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFG-RWIHVYIDKRIKGVTNAS 373

Query: 277 DHYACMVDLLGRAGLLEEAENFIASM 302
                ++D+  + G +E A     SM
Sbjct: 374 SLRTSLIDMYAKCGDIEAAHQVFNSM 399



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 115/263 (43%), Gaps = 33/263 (12%)

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
           F  +  A  VF  + + +L+ W  +  G A +  P  A+ L+  M SL L PNS     L
Sbjct: 50  FDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFL 109

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
           L +CA+L     G  ++ ++ K   +LD  +  +LI MY K G    A +VF     +DV
Sbjct: 110 LKSCAKLKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDV 169

Query: 206 SAYTSAIFGLAMNGH-------------------------------SIEAFELFENMKSK 234
            +YT+ I G A  G+                               + EA +LF+ M   
Sbjct: 170 VSYTALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKT 229

Query: 235 GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEE 294
            + PD  + + V+SAC+  G ++ G    HS  D HG+   L     ++DL  + G +E 
Sbjct: 230 NVKPDESTMVTVVSACAQSGSIQLG-RQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVET 288

Query: 295 AENFIASMPMKPDNVIWGTLLGA 317
           A      +  K D + W T++G 
Sbjct: 289 ACGLFQGLSNK-DVISWNTMIGG 310


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 208/466 (44%), Positives = 300/466 (64%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N++IN Y++ G+     ++FD+M  +  VSWNS++ G VR G ++ A ++F+ MP   LV
Sbjct: 380 NAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLV 439

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           SW  +I    Q    KEA+ LFR MQS  +  +   +V + SAC  LGALD   W++ YI
Sbjct: 440 SWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLAKWIHGYI 499

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
           +KK I  D  L  AL+DM+A+CG    AMQVF+    +DVSA+T+AI  +AM G+   A 
Sbjct: 500 KKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAI 559

Query: 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL 285
           ELF+ M  +GI PD + ++A+L+A SH G VE+G++ F SM D++GI P+  HY CMVDL
Sbjct: 560 ELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQGWHIFRSMKDIYGIAPQAVHYGCMVDL 619

Query: 286 LGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRY 345
           LGRAGLL EA + I SM M+P++VIWG+LL ACRVH+N ++       + E D    G +
Sbjct: 620 LGRAGLLSEALSLINSMQMEPNDVIWGSLLAACRVHKNVDIAAYAAERISELDPERTGIH 679

Query: 346 ILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIY 405
           +LLSNIY    + ++  +VR  ++++   + PG S IE++G + EF  GD SH +   I 
Sbjct: 680 VLLSNIYASAGRWDDVAKVRLHLKEKGAHKMPGSSSIEINGKIFEFTTGDESHPEMTHIE 739

Query: 406 QFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIV 465
              +EI  ++++ GY  +  +V+ D+ E+EKE ++  HSEKLA+AF LI T  G  IR+ 
Sbjct: 740 PMLKEICCRLRDIGYVPDLTNVLLDVNEKEKEYLLSRHSEKLAIAFALISTGQGMPIRVA 799

Query: 466 KNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           KN+RICSDCHS  KLVSK + R+I +RD   +H F+ G CSC +YW
Sbjct: 800 KNLRICSDCHSFAKLVSKSYSREIIVRDNNRFHFFQQGFCSCGDYW 845



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 104/412 (25%), Positives = 181/412 (43%), Gaps = 72/412 (17%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +VK  F  D+FV+NSLI FY  CG +   R VFD+  + +VVSW S+I GY + G   E 
Sbjct: 165 IVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEA 224

Query: 62  LKLFDKMP---------------------------------------QRNDVSWNSILGG 82
           + LF +M                                        + N +  N+++  
Sbjct: 225 VSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDM 284

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
            ++ G++D A ++F++   ++LV +  ++S + + G  +E LA+  EM      P+   +
Sbjct: 285 YMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITM 344

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           +S +SAC++L  +  G W + Y+ +  ++    +C A+I+MY KCG  ++A +VF    +
Sbjct: 345 LSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLN 404

Query: 203 KDVSAYTSAIFGLAMNGHS-------------------------------IEAFELFENM 231
           K   ++ S I G   NG                                  EA ELF  M
Sbjct: 405 KTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVM 464

Query: 232 KSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGL 291
           +S+GI+ D ++ + V SAC +LG ++    + H       I  ++     +VD+  R G 
Sbjct: 465 QSEGITADKVTMVGVASACGYLGALDLA-KWIHGYIKKKDIHFDMHLGTALVDMFARCGD 523

Query: 292 LEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDG 343
            + A      M +K D   W   +GA  +  N      + + +++     DG
Sbjct: 524 PQSAMQVFNKM-VKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDG 574



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 172/335 (51%), Gaps = 10/335 (2%)

Query: 12  FVKNSLIQFYSVCGRVRDARWVFDESDDLDVV----SWNSMINGYVRNGEILEGLKLFDK 67
           ++ +SLI+ +S CG    A  VF +   +  V    ++  +++   ++  + EG ++   
Sbjct: 105 YMFSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGA 164

Query: 68  MP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEA 123
           +     +R+    NS++      G +D   RVF++M +R++VSW  LI G+A+ G  KEA
Sbjct: 165 IVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEA 224

Query: 124 LALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDM 183
           ++LF EM  + + PNS  +V ++SACA+L  L  G  V + I +  +++++++  AL+DM
Sbjct: 225 VSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDM 284

Query: 184 YAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISY 243
           Y KCG+ID A ++F    DK++  Y + +      G + E   +   M   G  PD I+ 
Sbjct: 285 YMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITM 344

Query: 244 IAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP 303
           ++ +SACS L  V  G  + H     +G++   +    ++++  + G  E A      M 
Sbjct: 345 LSAVSACSELDDVSCG-KWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRM- 402

Query: 304 MKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338
           +    V W +L+     + + E   +I + + +SD
Sbjct: 403 LNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSD 437



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 91/202 (45%), Gaps = 19/202 (9%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           + K    +D+ +  +L+  ++ CG  + A  VF++    DV +W + I      G     
Sbjct: 499 IKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGA 558

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMP-----KRSLVSWVVLIS 112
           ++LFD+M Q+    + V + ++L  L   G V+    +F  M          V +  ++ 
Sbjct: 559 IELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQGWHIFRSMKDIYGIAPQAVHYGCMVD 618

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKL 172
              + G   EAL+L   MQ   +EPN  I  SLL+AC     +D    + +Y  ++  +L
Sbjct: 619 LLGRAGLLSEALSLINSMQ---MEPNDVIWGSLLAACRVHKNVD----IAAYAAERISEL 671

Query: 173 D---SILCAALIDMYAKCGSID 191
           D   + +   L ++YA  G  D
Sbjct: 672 DPERTGIHVLLSNIYASAGRWD 693


>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 630

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 203/474 (42%), Positives = 319/474 (67%), Gaps = 2/474 (0%)

Query: 40  LDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQM 99
           LD      +++ Y + G+++   K+FD+MP+R+ VS  +++    + G+V+ A  +F++M
Sbjct: 157 LDPYVATGLVDIYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDRM 216

Query: 100 PKRSLVSWVVLISGFAQNGRPKEALALFREMQS-LDLEPNSAILVSLLSACAQLGALDYG 158
            +R +VSW V+I G++Q+G P +AL LF+++ +    +P+   +V+ LSAC+Q+GAL+ G
Sbjct: 217 CERDIVSWNVMIDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQIGALETG 276

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
            W++ ++    I+L+  +C ALIDMY+KCGS++ A+ VF+    KD+ A+ + I G AM+
Sbjct: 277 RWIHVFVNSSRIRLNVKVCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMITGYAMH 336

Query: 219 GHSIEAFELFENMKS-KGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELD 277
           G+S +A  LF+ M+   G+ P  I++I  L AC+H G V +G   F SM   +GIKP+++
Sbjct: 337 GYSQDALRLFDEMQGITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPKIE 396

Query: 278 HYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIES 337
           HY C+V LLGRAG L+ A   I +M M+ D+V+W ++LG+C++H    +G+ I   LI  
Sbjct: 397 HYGCLVSLLGRAGQLKRAYEIIKNMNMEADSVLWSSVLGSCKLHGEFMLGKEIAEYLIGQ 456

Query: 338 DQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRS 397
           + ++ G Y+LLSNIY      E   +VR  M+++ I + PG S IE+D  VHEF AGDR 
Sbjct: 457 NISNSGIYVLLSNIYALVGDYEGVAKVRNLMKEKGIVKEPGISTIEIDNKVHEFRAGDRE 516

Query: 398 HEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTK 457
           H K++EIY    ++ ++IK++GY   T +V+ D+EE EKE  +  HSE+LA+A+GLI TK
Sbjct: 517 HLKSKEIYTMLRKMSERIKSHGYVPNTNTVLHDLEETEKERSLQVHSERLAIAYGLISTK 576

Query: 458 PGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           PGS ++I KN+R+CSDCH+  KL+SK+  RKI +RDR  +HHF DGSCSC ++W
Sbjct: 577 PGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFSDGSCSCDDFW 630



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 118/276 (42%), Gaps = 38/276 (13%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           G +  +  +F+Q     L  +   I+  + NG   +A  L+ ++ S  + PN     S+L
Sbjct: 76  GKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSQINPNEFTFSSIL 135

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG----- 201
            +C+       G  +++++ K  + LD  +   L+D+YAK G +  A +VF         
Sbjct: 136 KSCST----KSGKLIHTHVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDRMPERSLV 191

Query: 202 --------------------------DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG 235
                                     ++D+ ++   I G + +G   +A  LF+ + + G
Sbjct: 192 SSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQKLLADG 251

Query: 236 -ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEE 294
              PD I+ +A LSACS +G +E G  + H   +   I+  +     ++D+  + G LEE
Sbjct: 252 KPKPDEITVVAALSACSQIGALETG-RWIHVFVNSSRIRLNVKVCTALIDMYSKCGSLEE 310

Query: 295 AENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
           A       P K D V W  ++    +H  ++   R+
Sbjct: 311 AVLVFNDTPRK-DIVAWNAMITGYAMHGYSQDALRL 345



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 75/158 (47%), Gaps = 12/158 (7%)

Query: 184 YAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISY 243
           YA  G I  ++ +FH   D D+  +T+AI   ++NG   +AF L+  + S  I+P+  ++
Sbjct: 72  YASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSQINPNEFTF 131

Query: 244 IAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYAC--MVDLLGRAGLLEEAENFIAS 301
            ++L +CS      K     H+     G+   LD Y    +VD+  + G +  A+     
Sbjct: 132 SSILKSCS-----TKSGKLIHTHVLKFGLG--LDPYVATGLVDIYAKGGDVVSAQKVFDR 184

Query: 302 MPMKPDNVIWGTLLGACRVHR-NAEMGQRIGNMLIESD 338
           MP +  +++  T +  C   + N E  + + + + E D
Sbjct: 185 MPER--SLVSSTAMITCYAKQGNVEAARALFDRMCERD 220


>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
 gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
          Length = 605

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 218/550 (39%), Positives = 329/550 (59%), Gaps = 39/550 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + +K  F   V +   LI  +S CG V  AR +F E    D++S N+MI+G+  NGE  +
Sbjct: 56  LAIKCGFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETED 115

Query: 61  GLKLFDKMPQRND-VSWNSILG------------------------GLVRFGSVDDA--- 92
            ++LF ++    + VS ++I+G                        G+V   SV  A   
Sbjct: 116 SVRLFKELLSSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTT 175

Query: 93  --CRV---------FNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
             CR+         F++  +++L SW  +ISG  QNG    A++LF+ MQ  ++ PN   
Sbjct: 176 VYCRLNEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVT 235

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           + S+LSACAQ+GAL  G WV+S I+    + +  +  ALIDMYAKCGSI +A ++F    
Sbjct: 236 VTSILSACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMP 295

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
           +K+   + + I G  ++GH  EA +LF +M S  + P  +++++VL ACSH G V++G  
Sbjct: 296 EKNEVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVKEGDG 355

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            FH+M    G +P  +HYACMVD+LGRAG L++A  FI +MP++P   +WG LLGAC +H
Sbjct: 356 IFHTMVHDFGFEPLAEHYACMVDILGRAGQLKKALEFIKAMPVEPGPPVWGALLGACMIH 415

Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
           ++  +       L E D  + G Y+L+SNIY    K   A  VR+  +K+++ + PGC+L
Sbjct: 416 KDTNLAHVASEKLFELDPENIGYYVLMSNIYSVERKYPQAASVRQVAKKKRLAKTPGCTL 475

Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIG 441
           IE+  V H F +GD+SH +++ IY   +++  K+   G+  ET +V+ D+EEEEKE  + 
Sbjct: 476 IEIGQVPHVFTSGDQSHPQSKAIYAELDKLTGKMTEAGFQTETTTVLHDLEEEEKELTMK 535

Query: 442 YHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
            HSEKLA+AFGLI T+PG+ IRI+KN+R+C DCH+  K +SK+ KR I +RD   +HHF+
Sbjct: 536 VHSEKLAIAFGLISTEPGAEIRIIKNLRVCLDCHNWTKFLSKITKRVIVVRDANRFHHFK 595

Query: 502 DGSCSCLEYW 511
           DG CSC +YW
Sbjct: 596 DGLCSCGDYW 605


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 213/516 (41%), Positives = 323/516 (62%), Gaps = 6/516 (1%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEI--- 58
           +VK     ++F+ N+L+  Y  CG +R+AR V D+    DVVSWNSM+ GY ++G+    
Sbjct: 163 IVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDA 222

Query: 59  LEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRV---FNQMPKRSLVSWVVLISGFA 115
           LE  K  D +   +D    + L  +V + S+++   +   F +M K++L+SW V+I+ + 
Sbjct: 223 LEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYV 282

Query: 116 QNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI 175
            N  P EA++LF +M+   ++P++  + SLL AC  L AL  G  ++ YI+K  ++ + +
Sbjct: 283 NNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLRPNLL 342

Query: 176 LCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG 235
           L  AL+DMYAKCG ++ A  VF     +DV ++TS +     +G   +A  LF  M   G
Sbjct: 343 LENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSG 402

Query: 236 ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA 295
            +PDSI++++VLSACSH G +++G +YF  M + +GI P ++H+ACMVDL GRAG +EEA
Sbjct: 403 QNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEA 462

Query: 296 ENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVET 355
            +FI  MPM+P+  +WG LL ACRVH   ++G    ++L +      G Y+LLSNIY + 
Sbjct: 463 YSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKA 522

Query: 356 LKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKI 415
              ++   VR  M+K  IK+ PG S +EL+G VH FLAGD+ H + + IY   + +V K+
Sbjct: 523 GMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGELDVLVGKM 582

Query: 416 KNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCH 475
           K  GY  +T S + D+E E+KE  +  HSEKLA+ F ++ TK G+ IRI KN+R+C DCH
Sbjct: 583 KELGYIPQTESALHDVEVEDKECHLAIHSEKLAIVFAILNTKQGTPIRITKNLRVCGDCH 642

Query: 476 SAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            A+KL+SK+  R I +RD   +HHF +G CSC +YW
Sbjct: 643 IAIKLISKIVSRNIIVRDCNRFHHFSNGICSCGDYW 678



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/356 (23%), Positives = 146/356 (41%), Gaps = 74/356 (20%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V+      D  +   L++ YS  G    AR++FD S + +VV +N MI  YV N   +E
Sbjct: 61  IVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVE 120

Query: 61  GLKLFDKM------PQR---------------------------------NDVSWNSILG 81
            L +F  M      P                                   N    N+++ 
Sbjct: 121 ALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVA 180

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G + +A +V +QMP R +VSW  +++G+AQ+G+  +AL + +EM SL+L  ++  
Sbjct: 181 MYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGT 240

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           + S                           L  ++C      Y    ++     +F    
Sbjct: 241 MAS---------------------------LSPVVC------YTSLENVQYIHNMFERMT 267

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
            K++ ++   I     N    EA  LF  M+  G+ PD+++  ++L AC  L  +  G  
Sbjct: 268 KKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLG-R 326

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
             H   +   ++P L     ++D+  + G LEEA +    M ++ D V W +++ A
Sbjct: 327 RLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLR-DVVSWTSMMSA 381



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 135/300 (45%), Gaps = 25/300 (8%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           G    A  +F++  ++++V + V+I  +  N    EAL++F+ M S    P+      +L
Sbjct: 85  GETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVL 144

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
            AC+ L  L  G  V+  I K  +  +  +  AL+ MY KCG +  A +V      +DV 
Sbjct: 145 KACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVV 204

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
           ++ S + G A +G   +A E+ + M S  ++ D+   +A LS       +E    Y H+M
Sbjct: 205 SWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDA-GTMASLSPVVCYTSLEN-VQYIHNM 262

Query: 267 FDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP---MKPDNVIWGTLLGAC----- 318
           F+    K  L  +  M+ +     +  EA +    M    MKPD V   +LL AC     
Sbjct: 263 FE-RMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSA 321

Query: 319 -----RVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKI 373
                R+H+  E G    N+L+E+          L ++Y +    E A +V   MR R +
Sbjct: 322 LFLGRRLHKYIEKGNLRPNLLLEN---------ALLDMYAKCGCLEEARDVFDKMRLRDV 372


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/551 (40%), Positives = 325/551 (58%), Gaps = 41/551 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V   S   DV    +LI  Y+  G +  A  +FDE    DVVSWN+ I+GY   G   E 
Sbjct: 160 VXDKSSHRDVVSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEA 219

Query: 62  LKLFDKMPQ--------------------------RNDVSW-------------NSILGG 82
           L+LF KM +                          R   SW             N+++  
Sbjct: 220 LELFKKMMKTNVRPDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDL 279

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G ++ AC +F  +  + ++SW  LI G+      KEAL LF++M     +PN   +
Sbjct: 280 YSKCGELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTM 339

Query: 143 VSLLSACAQLGALDYGNWVYSYIQK--KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
           +S+LSACA LGA+D G W++ YI K  K +   S L  +LIDMYAKCG I+ A QVF S 
Sbjct: 340 LSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSM 399

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
            ++ +S++ + IFG AM+G +  AF++F  M+  GI PD I+++ +LSACSH G ++ G 
Sbjct: 400 LNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGR 459

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
           + F SM   + + P+L+HY CM+DL G +GL +EAE  I +M M+PD VIW +LL AC++
Sbjct: 460 HIFRSMTRDYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKM 519

Query: 321 HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS 380
           H N E+G+     LI+ +  + G Y+LLSNIY    +     + R  +  + +K+ PGCS
Sbjct: 520 HGNVELGESYAQNLIKIEPENPGSYVLLSNIYATAERWNEVAKTRALLNDKGMKKVPGCS 579

Query: 381 LIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVI 440
            IE+D VVHEF+ GD+ H + +EIY   EE+   ++  G+  +T  V+ ++EEE KE  +
Sbjct: 580 SIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGAL 639

Query: 441 GYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF 500
            +HSEKLA+AFGLI TKPG+ + IVKN+R+C +CH A KL+SK++KR+I  RDR  +HHF
Sbjct: 640 RHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHF 699

Query: 501 EDGSCSCLEYW 511
            DG CSC +YW
Sbjct: 700 RDGECSCNDYW 710



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 87/266 (32%), Positives = 155/266 (58%), Gaps = 3/266 (1%)

Query: 39  DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQ 98
           DLD+    S+I+ YV+NG + +  K+ DK   R+ VS+ +++ G    G ++ A ++F++
Sbjct: 135 DLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGXIESAHKMFDE 194

Query: 99  MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
           +P + +VSW   ISG+A+ G  KEAL LF++M   ++ P+ + +V++LSACAQ G+++ G
Sbjct: 195 IPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSIELG 254

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
             V+S+I       +  +  ALID+Y+KCG ++ A  +F    +KDV ++ + I G    
Sbjct: 255 RQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHM 314

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD--VHGIKPEL 276
               EA  LF++M   G  P+ ++ +++LSAC+HLG ++ G  + H   D  + G+    
Sbjct: 315 NLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIG-RWIHVYIDKRLKGVTNAS 373

Query: 277 DHYACMVDLLGRAGLLEEAENFIASM 302
                ++D+  + G +E A+    SM
Sbjct: 374 SLRTSLIDMYAKCGDIEAAQQVFDSM 399



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 113/263 (42%), Gaps = 33/263 (12%)

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
           F  +  A  VF+ + +  L+ W  +  G A +  P  AL L+  M SL L PNS     L
Sbjct: 50  FDGLPYAISVFDTIQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFL 109

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
           L +CA+  A   G  ++  + K    LD  +  +LI MY + G ++ A +V      +DV
Sbjct: 110 LKSCAKSXAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDV 169

Query: 206 SAYTSAIFGLAMNG-----HSI--------------------------EAFELFENMKSK 234
            +YT+ I G A  G     H +                          EA ELF+ M   
Sbjct: 170 VSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKT 229

Query: 235 GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEE 294
            + PD  + + VLSAC+  G +E G    HS  + HG    L     ++DL  + G LE 
Sbjct: 230 NVRPDESTMVTVLSACAQSGSIELG-RQVHSWINDHGFGXNLKIVNALIDLYSKCGELET 288

Query: 295 AENFIASMPMKPDNVIWGTLLGA 317
           A      +  K D + W TL+G 
Sbjct: 289 ACGLFQGLSNK-DVISWNTLIGG 310


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 230/582 (39%), Positives = 336/582 (57%), Gaps = 72/582 (12%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDES------------------------ 37
           V+K  +  D++V  SLI  Y   GR+ DAR VFD+S                        
Sbjct: 114 VLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASA 173

Query: 38  ----DDL---DVVSWNSMINGYVRNGEILEGLKLFDKMPQ-------------------- 70
               D++   DVVSWN+MI+GY   G   E L+LF +M +                    
Sbjct: 174 QKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQS 233

Query: 71  ------RNDVSW-------------NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLI 111
                 R   SW             N+++   ++ G V+ AC +F  +  + ++SW  LI
Sbjct: 234 ASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLI 293

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK--KC 169
            G+      KEAL LF+EM      PN   ++S+L ACA LGA++ G W++ YI K  K 
Sbjct: 294 GGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKG 353

Query: 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFE 229
           +   S    +LIDMYAKCG I+ A QVF S  ++ +S++ + IFG AM+G +  AF++F 
Sbjct: 354 VANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFS 413

Query: 230 NMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRA 289
            M+   I PD I+++ +LSACSH G ++ G + F SM + + I P+L+HY CM+DLLG +
Sbjct: 414 RMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHS 473

Query: 290 GLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLS 349
           GL +EAE  I +M M+PD VIW +LL AC++H N E+G+     LI+ +  + G Y+LLS
Sbjct: 474 GLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPKNPGSYVLLS 533

Query: 350 NIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWE 409
           NIY    +     ++R  +  + +K+ PGCS IE+D VVHEF+ GD+ H + +EIY   E
Sbjct: 534 NIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLE 593

Query: 410 EIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIR 469
           E+   ++  G+  +T  V+ ++EEE KE  + +HSEKLA+AFGLI TKPG+ + IVKN+R
Sbjct: 594 EMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLR 653

Query: 470 ICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           +C +CH A KL+SK++KR+I  RDR  +HHF DG CSC +YW
Sbjct: 654 VCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 695



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 114/263 (43%), Gaps = 33/263 (12%)

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
           F  +  A  VF  + + +L+ W  +  G A +  P  AL L+  M SL L PN      L
Sbjct: 35  FDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFL 94

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
           L +CA+  A   G  ++ ++ K    LD  +  +LI MY + G ++ A +VF     +DV
Sbjct: 95  LKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDV 154

Query: 206 SAYTSAIFGLAMNGH-------------------------------SIEAFELFENMKSK 234
            +YT+ I G A  G+                               + EA ELF+ M   
Sbjct: 155 VSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKT 214

Query: 235 GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEE 294
            + PD  + ++V+SAC+    +E G    HS  D HG    L     ++DL  + G +E 
Sbjct: 215 NVRPDESTMVSVVSACAQSASIELG-RQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVET 273

Query: 295 AENFIASMPMKPDNVIWGTLLGA 317
           A      +  K D + W TL+G 
Sbjct: 274 ACGLFEGLSYK-DVISWNTLIGG 295


>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
 gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g37380, chloroplastic; Flags: Precursor
 gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
 gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
 gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
          Length = 632

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 202/474 (42%), Positives = 316/474 (66%), Gaps = 2/474 (0%)

Query: 40  LDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQM 99
           +D      +++ Y + G+++   K+FD+MP+R+ VS  +++    + G+V+ A  +F+ M
Sbjct: 159 IDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSM 218

Query: 100 PKRSLVSWVVLISGFAQNGRPKEALALFREMQSL-DLEPNSAILVSLLSACAQLGALDYG 158
            +R +VSW V+I G+AQ+G P +AL LF+++ +    +P+   +V+ LSAC+Q+GAL+ G
Sbjct: 219 CERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETG 278

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
            W++ +++   I+L+  +C  LIDMY+KCGS++ A+ VF+    KD+ A+ + I G AM+
Sbjct: 279 RWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMH 338

Query: 219 GHSIEAFELFENMKS-KGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELD 277
           G+S +A  LF  M+   G+ P  I++I  L AC+H G V +G   F SM   +GIKP+++
Sbjct: 339 GYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIE 398

Query: 278 HYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIES 337
           HY C+V LLGRAG L+ A   I +M M  D+V+W ++LG+C++H +  +G+ I   LI  
Sbjct: 399 HYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGL 458

Query: 338 DQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRS 397
           +  + G Y+LLSNIY      E   +VR  M+++ I + PG S IE++  VHEF AGDR 
Sbjct: 459 NIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDRE 518

Query: 398 HEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTK 457
           H K++EIY    +I ++IK++GY   T +V+ D+EE EKE  +  HSE+LA+A+GLI TK
Sbjct: 519 HSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLISTK 578

Query: 458 PGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           PGS ++I KN+R+CSDCH+  KL+SK+  RKI +RDR  +HHF DGSCSC ++W
Sbjct: 579 PGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 123/278 (44%), Gaps = 38/278 (13%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           G +  +  +F+Q     L  +   I+  + NG   +A  L+ ++ S ++ PN     SLL
Sbjct: 78  GKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLL 137

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAK-------------------- 186
            +C+       G  +++++ K  + +D  +   L+D+YAK                    
Sbjct: 138 KSCST----KSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLV 193

Query: 187 -------C----GSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG 235
                  C    G+++ A  +F S  ++D+ ++   I G A +G   +A  LF+ + ++G
Sbjct: 194 SSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEG 253

Query: 236 -ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEE 294
              PD I+ +A LSACS +G +E G  + H       I+  +     ++D+  + G LEE
Sbjct: 254 KPKPDEITVVAALSACSQIGALETG-RWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEE 312

Query: 295 AENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGN 332
           A       P K D V W  ++    +H  ++   R+ N
Sbjct: 313 AVLVFNDTPRK-DIVAWNAMIAGYAMHGYSQDALRLFN 349



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 75/158 (47%), Gaps = 12/158 (7%)

Query: 184 YAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISY 243
           YA  G I  ++ +FH   D D+  +T+AI   ++NG   +AF L+  + S  I+P+  ++
Sbjct: 74  YASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTF 133

Query: 244 IAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYAC--MVDLLGRAGLLEEAENFIAS 301
            ++L +CS      K     H+     G+   +D Y    +VD+  + G +  A+     
Sbjct: 134 SSLLKSCS-----TKSGKLIHTHVLKFGLG--IDPYVATGLVDVYAKGGDVVSAQKVFDR 186

Query: 302 MPMKPDNVIWGTLLGACRVHR-NAEMGQRIGNMLIESD 338
           MP +  +++  T +  C   + N E  + + + + E D
Sbjct: 187 MPER--SLVSSTAMITCYAKQGNVEAARALFDSMCERD 222


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 213/516 (41%), Positives = 323/516 (62%), Gaps = 6/516 (1%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEI--- 58
           +VK     ++F+ N+L+  Y  CG +R+AR V D+    DVVSWNSM+ GY ++G+    
Sbjct: 163 IVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDA 222

Query: 59  LEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRV---FNQMPKRSLVSWVVLISGFA 115
           LE  K  D +   +D    + L  +V + S+++   +   F +M K++L+SW V+I+ + 
Sbjct: 223 LEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYV 282

Query: 116 QNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI 175
            N  P EA++LF +M+   ++P++  + SLL AC  L AL  G  ++ YI+K  ++ + +
Sbjct: 283 NNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLQPNLL 342

Query: 176 LCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG 235
           L  AL+DMYAKCG ++ A  VF     +DV ++TS +     +G   +A  LF  M   G
Sbjct: 343 LENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSG 402

Query: 236 ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA 295
            +PDSI++++VLSACSH G +++G +YF  M + +GI P ++H+ACMVDL GRAG +EEA
Sbjct: 403 QNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEA 462

Query: 296 ENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVET 355
            +FI  MPM+P+  +WG LL ACRVH   ++G    ++L +      G Y+LLSNIY + 
Sbjct: 463 YSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKA 522

Query: 356 LKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKI 415
              ++   VR  M+K  IK+ PG S +EL+G VH FLAGD+ H + + IY   + +V K+
Sbjct: 523 GMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGELDVLVGKM 582

Query: 416 KNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCH 475
           K  GY  +T S + D+E E+KE  +  HSEKLA+ F ++ TK G+ IRI KN+R+C DCH
Sbjct: 583 KELGYIPQTESALHDVEVEDKECHLAIHSEKLAIVFAILNTKQGTPIRITKNLRVCGDCH 642

Query: 476 SAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            A+KL+SK+  R I +RD   +HHF +G CSC +YW
Sbjct: 643 IAIKLISKIVSRNIIVRDCNRFHHFSNGICSCGDYW 678



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 82/356 (23%), Positives = 146/356 (41%), Gaps = 74/356 (20%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V+      D  +   L++ YS  G    AR++FD S + +VV +N MI  YV N   +E
Sbjct: 61  IVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVE 120

Query: 61  GLKLFDKM------PQR---------------------------------NDVSWNSILG 81
            L +F  M      P                                   N    N+++ 
Sbjct: 121 ALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVA 180

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G + +A +V +QMP R +VSW  +++G+AQ+G+  +AL + +EM SL+L  ++  
Sbjct: 181 MYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGT 240

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           + S                           L  ++C      Y    ++     +F    
Sbjct: 241 MAS---------------------------LSPVVC------YTSLENVQYIHNMFERMT 267

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
            K++ ++   I     N    EA  LF  M+  G+ PD+++  ++L AC  L  +  G  
Sbjct: 268 KKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLG-R 326

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
             H   +   ++P L     ++D+  + G LEEA +    M ++ D V W +++ A
Sbjct: 327 RLHKYIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLR-DVVSWTSMMSA 381



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 135/300 (45%), Gaps = 25/300 (8%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           G    A  +F++  ++++V + V+I  +  N    EAL++F+ M S    P+      +L
Sbjct: 85  GETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVL 144

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
            AC+ L  L  G  V+  I K  +  +  +  AL+ MY KCG +  A +V      +DV 
Sbjct: 145 KACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVV 204

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
           ++ S + G A +G   +A E+ + M S  ++ D+   +A LS       +E    Y H+M
Sbjct: 205 SWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDA-GTMASLSPVVCYTSLEN-VQYIHNM 262

Query: 267 FDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP---MKPDNVIWGTLLGAC----- 318
           F+    K  L  +  M+ +     +  EA +    M    MKPD V   +LL AC     
Sbjct: 263 FE-RMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSA 321

Query: 319 -----RVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKI 373
                R+H+  E G    N+L+E+          L ++Y +    E A +V   MR R +
Sbjct: 322 LFLGRRLHKYIEKGNLQPNLLLENA---------LLDMYAKCGCLEEARDVFDKMRLRDV 372


>gi|326506208|dbj|BAJ86422.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 582

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/502 (42%), Positives = 318/502 (63%), Gaps = 34/502 (6%)

Query: 13  VKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRN 72
           V+N LI  YSVCG + DAR VFD   ++D+++WN ++ GY +  +     + F +MP R+
Sbjct: 112 VRNGLIHAYSVCGMLFDARKVFDHGPEVDMIAWNCLLRGYAQGRDTGALREFFAQMPARD 171

Query: 73  DVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM-Q 131
            VSWN++                         ++W V       NG  +EA+A+FREM  
Sbjct: 172 SVSWNTV-------------------------IAWCV------ANGEHEEAVAVFREMLA 200

Query: 132 SLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSID 191
           S + +P+   LVS++SA A LGAL  G W ++Y+ +K I++D  L +ALI+MY+KCG I+
Sbjct: 201 SNECQPDRVTLVSVISAIAYLGALAQGLWAHAYVCRKEIEVDEKLSSALINMYSKCGFIE 260

Query: 192 LAMQVF-HSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250
            A+ VF +S   + V  + + + G   +G S  A ELF  M+S G  P+ I++  +L+AC
Sbjct: 261 GAVYVFENSCALRSVDTWNAMLAGFTASGCSERALELFTRMESSGFVPNKITFNTLLNAC 320

Query: 251 SHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVI 310
           SH G+VE+G  YF  M +   I+P++ HY CMVDL  RAGL E+AE  I  MPM+PD  +
Sbjct: 321 SHGGFVEEGIGYFERMTNSSSIEPDIAHYGCMVDLFCRAGLFEKAEEMIQMMPMEPDAAV 380

Query: 311 WGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370
           W  L+GACR + N E+G++ G+ LIE+  N    Y+LLSNIY      +   +VRK M  
Sbjct: 381 WKALVGACRTYSNFELGKKAGHRLIEAAPNDHAGYVLLSNIYALDGNWKGVYKVRKLMLN 440

Query: 371 RKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFD 430
             +++ PG S IELDGV+HEF++GD+SH + +++Y+   EI +++K  GY  +T  V+ D
Sbjct: 441 CGVQKVPGSSSIELDGVIHEFISGDKSHSRKRDVYEMLSEICQQLKVAGYAPDTSQVLLD 500

Query: 431 IEEEE-KETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKI 489
           I++E+ KE+ +  HSE+LALAFGLI T PG+ IRIVKN+R+C DCH+A+KL+SK++ R I
Sbjct: 501 IDDEDVKESSLALHSERLALAFGLISTAPGTPIRIVKNLRVCGDCHNAIKLLSKIYGRCI 560

Query: 490 SIRDRKHYHHFEDGSCSCLEYW 511
            +RD   +H F +GSCSC +YW
Sbjct: 561 MVRDANRFHRFREGSCSCGDYW 582



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 81/167 (48%), Gaps = 13/167 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVV-SWNSMINGYVRNGEILE 60
           V +     D  + ++LI  YS CG +  A +VF+ S  L  V +WN+M+ G+  +G    
Sbjct: 234 VCRKEIEVDEKLSSALINMYSKCGFIEGAVYVFENSCALRSVDTWNAMLAGFTASGCSER 293

Query: 61  GLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRS-----LVSWVVLI 111
            L+LF +M       N +++N++L      G V++    F +M   S     +  +  ++
Sbjct: 294 ALELFTRMESSGFVPNKITFNTLLNACSHGGFVEEGIGYFERMTNSSSIEPDIAHYGCMV 353

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
             F + G  ++A  +   +Q + +EP++A+  +L+ AC      + G
Sbjct: 354 DLFCRAGLFEKAEEM---IQMMPMEPDAAVWKALVGACRTYSNFELG 397


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 204/511 (39%), Positives = 321/511 (62%), Gaps = 1/511 (0%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           MV K     DVF+   L+  YS  G ++ AR VFD+    DVV+WN+MI G  ++ +   
Sbjct: 140 MVEKGGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPYV 199

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
             ++FD+M  ++DVSW +++ G    G   +   +F++M K   V+W V+I+ + QNG  
Sbjct: 200 ARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKM-KLGNVTWNVIIAAYMQNGHA 258

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
           KEA++ F +M+  +  PNS   VS+L A A L A   G   ++ I +     ++++  +L
Sbjct: 259 KEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSL 318

Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           IDMYAKCG +D + ++F+    KD  ++ + + G A++GH   A  LF  M+   +  DS
Sbjct: 319 IDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDS 378

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
           +S+++VLSAC H G VE+G   FHSM D + IKP+L+HYACMVDLLGRAGL +E   FI 
Sbjct: 379 VSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIK 438

Query: 301 SMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGEN 360
            MP++PD  +WG LLG+CR+H N ++G+   + L++ +  +   +++LS+IY ++ +  +
Sbjct: 439 VMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWAD 498

Query: 361 AEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGY 420
           A + R  M    +K+ PGCS +EL   VH F  GD+SH + + ++  W  +++K++  GY
Sbjct: 499 AGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGY 558

Query: 421 NVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKL 480
             +   V+ ++EEE+KE  +  HSE+LA+ F L+ T PGS I+IVKN+R+C+DCH+  K 
Sbjct: 559 VPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNTPPGSTIQIVKNLRVCADCHTTTKF 618

Query: 481 VSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           +SK+  R+I +RD   +HHFEDG CSC +YW
Sbjct: 619 ISKITTRRIIVRDATRFHHFEDGICSCNDYW 649



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/313 (20%), Positives = 112/313 (35%), Gaps = 97/313 (30%)

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
           F   D A  VF+  P  S + W  +I  + ++ +  EAL ++                  
Sbjct: 96  FHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMY------------------ 137

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
                           Y  ++K  ++ D  + A L+DMY+K G +  A +VF     +DV
Sbjct: 138 ----------------YCMVEKGGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDV 181

Query: 206 SAYTSAIFGL-------------------------------AMNGHSIEAFELFENMKSK 234
            A+ + I GL                               A NG  +E  ELF+ MK  
Sbjct: 182 VAWNAMIAGLSQSEDPYVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLG 241

Query: 235 GIS------------------------------PDSISYIAVLSACSHLGWVEKGFYYFH 264
            ++                              P+S+++++VL A ++L    +G   FH
Sbjct: 242 NVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGM-AFH 300

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
           +     G          ++D+  + G L+ +E     M  K D V W  +L    VH + 
Sbjct: 301 ACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHK-DTVSWNAMLSGYAVHGHG 359

Query: 325 EMGQRIGNMLIES 337
           +    + +++ ES
Sbjct: 360 DRAIALFSLMQES 372


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/541 (39%), Positives = 325/541 (60%), Gaps = 37/541 (6%)

Query: 7   FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFD 66
           +++D +V    I  YS CG+++    +F E    D+V++N+MI+GY  NGE    L LF 
Sbjct: 253 YSHD-YVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFK 311

Query: 67  KM----------------P----------------QRNDVSWNSILGGLV----RFGSVD 90
           ++                P                + N +S  S+   L     +   ++
Sbjct: 312 ELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIE 371

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
            A ++F++ P++SL SW  +ISG+ QNG  ++A++LFREMQ  +  PN   +  +LSACA
Sbjct: 372 SARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACA 431

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
           QLGAL  G WV+  ++    +    +  ALI MYAKCGSI  A ++F     K+   + +
Sbjct: 432 QLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNT 491

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I G  ++G   EA  +F  M + GI+P  ++++ VL ACSH G V++G   F+SM   +
Sbjct: 492 MISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRY 551

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
           G +P + HYACMVD+LGRAG L+ A  FI +M ++P + +W TLLGACR+H++  + + +
Sbjct: 552 GFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTV 611

Query: 331 GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHE 390
              L E D ++ G ++LLSNI+        A  VR+T +KRK+ +APG +LIE+    H 
Sbjct: 612 SEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHV 671

Query: 391 FLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALA 450
           F +GD+SH + +EIY+  E++  K++  GY  ET   + D+EEEE+E ++  HSE+LA+A
Sbjct: 672 FTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIA 731

Query: 451 FGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEY 510
           FGLI T+PG+ IRI+KN+R+C DCH+  KL+SK+ +R I +RD   +HHF+DG CSC +Y
Sbjct: 732 FGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDY 791

Query: 511 W 511
           W
Sbjct: 792 W 792



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 160/367 (43%), Gaps = 48/367 (13%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLF---- 65
           ++ + +++++ Y    RV DAR VFD   + D + WN+MI+GY +N   +E +++F    
Sbjct: 153 ELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLI 212

Query: 66  -------------DKMPQRNDV-------------------SWNSILGGLVRF----GSV 89
                        D +P   ++                   S + +L G +      G +
Sbjct: 213 NESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKI 272

Query: 90  DDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
                +F +  K  +V++  +I G+  NG  + +L+LF+E+        S+ LVSL+   
Sbjct: 273 KMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVS 332

Query: 150 AQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYT 209
             L  L Y   ++ Y  K      + +  AL  +Y+K   I+ A ++F    +K + ++ 
Sbjct: 333 GHL-MLIYA--IHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWN 389

Query: 210 SAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDV 269
           + I G   NG + +A  LF  M+    SP+ ++   +LSAC+ LG +  G  + H +   
Sbjct: 390 AMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLG-KWVHDLVRS 448

Query: 270 HGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQR 329
              +  +     ++ +  + G + EA      M  K + V W T++    +H     GQ 
Sbjct: 449 TDFESSIYVSTALIGMYAKCGSIAEARRLFDLM-TKKNEVTWNTMISGYGLHGQ---GQE 504

Query: 330 IGNMLIE 336
             N+  E
Sbjct: 505 ALNIFYE 511



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 130/287 (45%), Gaps = 43/287 (14%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +K++F     V  +L   YS    +  AR +FDES +  + SWN+MI+GY +NG   + +
Sbjct: 346 LKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAI 405

Query: 63  KLFDKMPQRNDVSWNSI-----------LGGL---------------------------- 83
            LF +M Q+++ S N +           LG L                            
Sbjct: 406 SLFREM-QKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGM 464

Query: 84  -VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + GS+ +A R+F+ M K++ V+W  +ISG+  +G+ +EAL +F EM +  + P     
Sbjct: 465 YAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTF 524

Query: 143 VSLLSACAQLGALDYGNWVY-SYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           + +L AC+  G +  G+ ++ S I +   +      A ++D+  + G +  A+Q   +  
Sbjct: 525 LCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMS 584

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248
            +  S+    + G A   H         + K   + PD++ Y  +LS
Sbjct: 585 IEPGSSVWETLLG-ACRIHKDTNLARTVSEKLFELDPDNVGYHVLLS 630



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 77/365 (21%), Positives = 148/365 (40%), Gaps = 75/365 (20%)

Query: 24  CGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGL 83
            GRV   + V D  D  +++  ++++  Y +   + +  K+FD+MP+++ + WN+     
Sbjct: 137 AGRVIHGQAVVDGCDS-ELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNT----- 190

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD-LEPNSAIL 142
                                     +ISG+ +N    E++ +FR++ +      ++  L
Sbjct: 191 --------------------------MISGYRKNEMYVESIQVFRDLINESCTRLDTTTL 224

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKK-CIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           + +L A A+L  L  G  ++S   K  C   D +L    I +Y+KCG I +   +F  + 
Sbjct: 225 LDILPAVAELQELRLGMQIHSLATKTGCYSHDYVL-TGFISLYSKCGKIKMGSALFREFR 283

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL-------G 254
             D+ AY + I G   NG +  +  LF+ +   G    S + ++++    HL       G
Sbjct: 284 KPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHG 343

Query: 255 WVEKGFYYFHS---------------------MFDVHGIKPELDHYACMVDLLGRAGLLE 293
           +  K  +  H+                     +FD    +  L  +  M+    + GL E
Sbjct: 344 YCLKSNFLSHASVSTALTTVYSKLNEIESARKLFD-ESPEKSLPSWNAMISGYTQNGLTE 402

Query: 294 EAENFIASMP---MKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSN 350
           +A +    M      P+ V    +L AC       +G+ + +++  +D          S+
Sbjct: 403 DAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTD--------FESS 454

Query: 351 IYVET 355
           IYV T
Sbjct: 455 IYVST 459



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 78/158 (49%), Gaps = 12/158 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V    F   ++V  +LI  Y+ CG + +AR +FD     + V+WN+MI+GY  +G+  E
Sbjct: 445 LVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQE 504

Query: 61  GLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLI 111
            L +F +M         V++  +L      G V +   +FN M  R     S+  +  ++
Sbjct: 505 ALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMV 564

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
               + G  + AL     ++++ +EP S++  +LL AC
Sbjct: 565 DILGRAGHLQRALQF---IEAMSIEPGSSVWETLLGAC 599


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 214/505 (42%), Positives = 319/505 (63%), Gaps = 9/505 (1%)

Query: 16  SLIQFYSVCGRVRD---ARWV--FDESDDLD--VVSWNSMINGYVRNGEILEGLKLFDKM 68
           +++   S C +  D    RW+  + E++     ++  N+M++ YV+ G I +   LF+KM
Sbjct: 276 TMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKM 335

Query: 69  PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFR 128
            +++ VSW ++L G  + G+ D+A  +F+ MP +   +W  LIS + QNG+P+ AL+LF 
Sbjct: 336 SEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFH 395

Query: 129 EMQ-SLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC 187
           EMQ S D +P+   L+  L A AQLGA+D+G+W++ YI+K  I L+  L  +L+DMYAKC
Sbjct: 396 EMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYIKKHDINLNCHLATSLLDMYAKC 455

Query: 188 GSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVL 247
           G+++ AM+VFH+   KDV  +++ I  LAM G    A +LF +M    I P+++++  +L
Sbjct: 456 GNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGKAALDLFSSMLEAYIKPNAVTFTNIL 515

Query: 248 SACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPD 307
            AC+H G V +G   F  M  ++GI P++ HY C+VD+ GRAGLLE+A +FI  MP+ P 
Sbjct: 516 CACNHAGLVNEGEQLFEQMEPLYGIVPQIQHYVCVVDIFGRAGLLEKAASFIEKMPIPPT 575

Query: 308 NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKT 367
             +WG LLGAC  H N E+ +     L+E +  + G ++LLSNIY +    E    +RK 
Sbjct: 576 AAVWGALLGACSRHGNVELAELAYQNLLELEPCNHGAFVLLSNIYAKAGDWEKVSNLRKL 635

Query: 368 MRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSV 427
           MR   +K+ P CS I+++G+VHEFL GD SH  +Q+IY   +EI +K K  GY  +  ++
Sbjct: 636 MRDSDVKKEPWCSSIDVNGIVHEFLVGDNSHPFSQKIYSKLDEISEKFKPIGYKPDMSNL 695

Query: 428 MFDIEEEE-KETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFK 486
           +   EE+   E  +  HSEKLA+AFGLI T     IRIVKNIRIC DCH+  KLVS+++ 
Sbjct: 696 LQLSEEDNLMEQSLNVHSEKLAIAFGLISTASSQPIRIVKNIRICGDCHAFAKLVSQLYD 755

Query: 487 RKISIRDRKHYHHFEDGSCSCLEYW 511
           R I +RDR  +HHF  G CSCL+YW
Sbjct: 756 RDILLRDRYRFHHFRGGKCSCLDYW 780



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 104/410 (25%), Positives = 182/410 (44%), Gaps = 76/410 (18%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSV--CGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEIL 59
           +++ S   D +  + L+  Y++  C  +  A+ VF++    ++  WN++I GY  + +  
Sbjct: 95  MLRTSRFCDPYTASKLLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNTLIRGYASSSDPT 154

Query: 60  EGLKLFDKM-------PQRNDVSW-------------NSILGGLV--------------- 84
           +   +F  M       P +    +              S+L G+V               
Sbjct: 155 QSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGMVIKASLSSDLFILNSL 214

Query: 85  -----RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS 139
                  G+ D A RVF  MP + +VSW  +I+ FA  G P +AL LF+EM+  D++PN 
Sbjct: 215 INFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEMEMKDVKPNV 274

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
             +VS+LSACA+   L++G W+ SYI+        IL  A++DMY KCG I+ A  +F+ 
Sbjct: 275 ITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNK 334

Query: 200 YGDKDVSAYTSAIFGLA-------------------------------MNGHSIEAFELF 228
             +KD+ ++T+ + G A                                NG    A  LF
Sbjct: 335 MSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLF 394

Query: 229 ENMK-SKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLG 287
             M+ SK   PD ++ I  L A + LG ++ G ++ H     H I         ++D+  
Sbjct: 395 HEMQLSKDAKPDEVTLICALCASAQLGAIDFG-HWIHVYIKKHDINLNCHLATSLLDMYA 453

Query: 288 RAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIES 337
           + G L +A     ++  K D  +W  ++GA  ++   +    + + ++E+
Sbjct: 454 KCGNLNKAMEVFHAVERK-DVYVWSAMIGALAMYGQGKAALDLFSSMLEA 502


>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
 gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 197/425 (46%), Positives = 286/425 (67%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           G ++ A ++F++MPK   V+W  +I G+A+ G+   A+ LFR+MQ   + P+   +VS+L
Sbjct: 159 GGMEFARKLFDEMPKLDPVTWTAMIGGYARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVL 218

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
           SAC  LGAL+ G W+ SYI+K+ +     L  AL+DM+AKCG +D A+ +F +   + + 
Sbjct: 219 SACTDLGALELGKWIESYIEKERVLKTVELSNALVDMFAKCGDVDKALGLFRNMSKRTIV 278

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
           ++TS I GLAM+G  +EA  LFE MK+ G+ P+ I++I +LSACSH G VE+G  YF  M
Sbjct: 279 SWTSVIVGLAMHGRGLEAVSLFEEMKASGMVPEDIAFIGLLSACSHSGLVERGRQYFSEM 338

Query: 267 FDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEM 326
               GI P+++HY CMVDLL RAGL+ EA  F+  MP++P+ +IW TL+ ACRVH   ++
Sbjct: 339 TRQFGIVPKIEHYGCMVDLLSRAGLVTEALEFVERMPIEPNPIIWRTLISACRVHGELKL 398

Query: 327 GQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDG 386
           G+ I   LI ++  H+  Y+LLSNIY + L  E   ++R  M K+ I++ PG ++IELD 
Sbjct: 399 GESISKQLIRNEPMHESNYVLLSNIYGKMLDWEKKSKIRVAMGKKGIQKVPGSTMIELDN 458

Query: 387 VVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEK 446
            +HEF+ GDRSH +  EI +   E+ +++K  GY   T  V  DI+EE+KE  +  HSEK
Sbjct: 459 EIHEFIVGDRSHNQYNEIIKMVNEMGREMKRAGYAPTTTEVFLDIDEEDKEDALSRHSEK 518

Query: 447 LALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCS 506
           LA+AF L+ T PGS IRI KN+R+C DCHSA K +SK++ R+I +RDR  +HHF DG CS
Sbjct: 519 LAIAFALLNTPPGSPIRITKNLRVCGDCHSASKFISKIYNREIVMRDRSRFHHFRDGQCS 578

Query: 507 CLEYW 511
           C ++W
Sbjct: 579 CGDFW 583



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 113/237 (47%), Gaps = 45/237 (18%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVC-GRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +VK  F  D+FV+N+++  Y  C G +  AR +FDE   LD V+W +MI GY R G+   
Sbjct: 135 LVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTAMIGGYARLGQSAG 194

Query: 61  GLKLFDKMPQ----RNDVSWNSILGG---------------------------------- 82
            + LF KM       +DV+  S+L                                    
Sbjct: 195 AVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELGKWIESYIEKERVLKTVELSNALVD 254

Query: 83  -LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G VD A  +F  M KR++VSW  +I G A +GR  EA++LF EM++  + P    
Sbjct: 255 MFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGRGLEAVSLFEEMKASGMVPEDIA 314

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKK---CIKLDSILCAALIDMYAKCGSIDLAMQ 195
            + LLSAC+  G ++ G   +S + ++     K++   C  ++D+ ++ G +  A++
Sbjct: 315 FIGLLSACSHSGLVERGRQYFSEMTRQFGIVPKIEHYGC--MVDLLSRAGLVTEALE 369



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 111/236 (47%), Gaps = 11/236 (4%)

Query: 88  SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKE-ALALFREMQSLDLEPNSAILVSLL 146
           SV+DA RV++         +  +I  +A++ + K  A+  +  M    + PN      +L
Sbjct: 64  SVEDA-RVYDAF------LFSTIIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVL 116

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC-GSIDLAMQVFHSYGDKDV 205
            ACA L  L+ G  V+  + K     D  +   ++ MY  C G ++ A ++F      D 
Sbjct: 117 KACAGLRDLNLGKAVHGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDP 176

Query: 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHS 265
             +T+ I G A  G S  A  LF  M+  G+ PD ++ ++VLSAC+ LG +E G  +  S
Sbjct: 177 VTWTAMIGGYARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELG-KWIES 235

Query: 266 MFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
             +   +   ++    +VD+  + G +++A     +M  K   V W +++    +H
Sbjct: 236 YIEKERVLKTVELSNALVDMFAKCGDVDKALGLFRNMS-KRTIVSWTSVIVGLAMH 290



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 12/160 (7%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ 70
           V + N+L+  ++ CG V  A  +F       +VSW S+I G   +G  LE + LF++M  
Sbjct: 246 VELSNALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGRGLEAVSLFEEMKA 305

Query: 71  RN----DVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLISGFAQNGRPK 121
                 D+++  +L      G V+   + F++M ++      +  +  ++   ++ G   
Sbjct: 306 SGMVPEDIAFIGLLSACSHSGLVERGRQYFSEMTRQFGIVPKIEHYGCMVDLLSRAGLVT 365

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161
           EAL     M    +EPN  I  +L+SAC   G L  G  +
Sbjct: 366 EALEFVERMP---IEPNPIIWRTLISACRVHGELKLGESI 402


>gi|125546238|gb|EAY92377.1| hypothetical protein OsI_14107 [Oryza sativa Indica Group]
          Length = 602

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 188/425 (44%), Positives = 290/425 (68%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           G + DA  VF++MPK S V+W  +I G+ + G   +A+ LFREMQ+  ++ +   ++ +L
Sbjct: 178 GFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVELFREMQANGVQADEVTVIGVL 237

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
           +A   LGAL+   WV  +++++ I     LC ALID  AKCG +D A+ VF     + V 
Sbjct: 238 AAATDLGALELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVV 297

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
           ++TS I  LAM G   EA  +FE MK  G+ PD +++I VL+ACSH G V++G  YF +M
Sbjct: 298 SWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAM 357

Query: 267 FDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEM 326
              +GI+P+++HY CMVD+ GRAG++E A  F+ +MP++P+ VIW +L+ ACR H   E+
Sbjct: 358 KVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHGRLEL 417

Query: 327 GQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDG 386
           G+ I   L+     H+  YI+LSN++  T + +   E+R+ M KR IK+ PGCS++ELDG
Sbjct: 418 GESITRSLLHEYPAHEANYIMLSNVFALTQRWKEKSEIRREMSKRGIKKVPGCSIVELDG 477

Query: 387 VVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEK 446
            VHEF+AGD SH + ++IY+  EE+ ++++  G+   T  V+ D++EE+KE  + +HSEK
Sbjct: 478 EVHEFIAGDESHPQYKDIYRMVEEMARELRRVGHIAATSEVLLDLDEEDKEGALQWHSEK 537

Query: 447 LALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCS 506
           LA+AF L+ T PG+ +R+VKN+R+CSDCH+A+K +S+V++R+I +RDR  +H F+DGSCS
Sbjct: 538 LAIAFALLRTPPGTQVRVVKNLRVCSDCHAAIKCISQVYRREIVVRDRSRFHRFKDGSCS 597

Query: 507 CLEYW 511
           C ++W
Sbjct: 598 CKDFW 602



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 112/238 (47%), Gaps = 48/238 (20%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGR--VRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +K  FA D +V N+LI  YS  G   + DAR VFD       V+W++MI GYVR G   +
Sbjct: 154 LKFGFATDQYVSNTLIHMYSCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSD 213

Query: 61  GLKLFDKMPQRNDVS-----------------------W-----------------NSIL 80
            ++LF +M Q N V                        W                 N+++
Sbjct: 214 AVELFREM-QANGVQADEVTVIGVLAAATDLGALELARWVRRFVEREGIGKSVTLCNALI 272

Query: 81  GGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
             L + G VD A  VF  M +RS+VSW  +I   A  GR KEA+ +F EM+   + P+  
Sbjct: 273 DTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDV 332

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKC---IKLDSILCAALIDMYAKCGSIDLAMQ 195
             + +L+AC+  G +D G   +  ++ +     K++   C  ++DM+ + G ++ AM+
Sbjct: 333 AFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGC--MVDMFGRAGMVERAME 388



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 78/171 (45%), Gaps = 16/171 (9%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V +      V + N+LI   + CG V  A  VF+      VVSW S+I+     G   E 
Sbjct: 256 VEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEA 315

Query: 62  LKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQM-------PKRSLVSWVVL 110
           +++F++M       +DV++  +L      G VD+ C  F+ M       PK  +  +  +
Sbjct: 316 VRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPK--IEHYGCM 373

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161
           +  F + G  + A+   R M    ++PN  I  SL+SAC   G L+ G  +
Sbjct: 374 VDMFGRAGMVERAMEFVRTMP---IQPNPVIWRSLVSACRAHGRLELGESI 421


>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Glycine max]
          Length = 1116

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 214/508 (42%), Positives = 314/508 (61%), Gaps = 35/508 (6%)

Query: 7   FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFD 66
            A D FV+ SLI  YS CG    AR                               + FD
Sbjct: 91  LANDPFVQTSLINMYSSCGTPTFAR-------------------------------QAFD 119

Query: 67  KMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALAL 126
           ++ Q +  SWN+I+    + G +  A ++F+QMP+++++SW  +I G+   G  K AL+L
Sbjct: 120 EITQPDLPSWNAIIHANAKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSL 179

Query: 127 FREMQSLD---LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDM 183
           FR +Q+L+   L PN   + S+LSACA+LGAL +G WV++YI K  +K+D +L  +LIDM
Sbjct: 180 FRSLQTLEGSQLRPNEFTMSSVLSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDM 239

Query: 184 YAKCGSIDLAMQVFHSYG-DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSIS 242
           YAKCGSI+ A  +F + G +KDV A+++ I   +M+G S E  ELF  M + G+ P++++
Sbjct: 240 YAKCGSIERAKCIFDNLGPEKDVMAWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVT 299

Query: 243 YIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM 302
           ++AVL AC H G V +G  YF  M + +G+ P + HY CMVDL  RAG +E+A N + SM
Sbjct: 300 FVAVLCACVHGGLVSEGNEYFKRMMNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSM 359

Query: 303 PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAE 362
           PM+PD +IWG LL   R+H + E  +     L+E D  +   Y+LLSN+Y +  +     
Sbjct: 360 PMEPDVMIWGALLNGARIHGDVETCEIAITKLLELDPANSSAYVLLSNVYAKLGRWREVR 419

Query: 363 EVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNV 422
            +R  M  R IK+ PGCSL+E+DGV+ EF AGD SH +   +Y   +EI+K+++ +GY  
Sbjct: 420 HLRDLMEVRGIKKLPGCSLVEVDGVIREFFAGDNSHPELLNLYVMLDEIMKRLEKHGYER 479

Query: 423 ETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVS 482
            T  V+ D++EE KE  +  HSEKLA+A+  + T PG+ IRIVKN+RICSDCH A+K++S
Sbjct: 480 NTGEVLLDLDEEGKEFALSLHSEKLAIAYCFLRTSPGTTIRIVKNLRICSDCHVAIKIIS 539

Query: 483 KVFKRKISIRDRKHYHHFEDGSCSCLEY 510
           K F R+I +RD   +HHF++G CSC +Y
Sbjct: 540 KEFNREIIVRDCNRFHHFKNGLCSCKDY 567



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 100/199 (50%), Gaps = 22/199 (11%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDE-SDDLDVVSWNSMINGYVRNGEILEGL 62
           K     DV +  SLI  Y+ CG +  A+ +FD    + DV++W++MI  +  +G   E L
Sbjct: 223 KTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGPEKDVMAWSAMITAFSMHGLSEECL 282

Query: 63  KLFDKM----PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVV-----LISG 113
           +LF +M     + N V++ ++L   V  G V +    F +M     VS ++     ++  
Sbjct: 283 ELFARMVNDGVRPNAVTFVAVLCACVHGGLVSEGNEYFKRMMNEYGVSPMIQHYGCMVDL 342

Query: 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQ-KKCIKL 172
           +++ GR ++A   +  ++S+ +EP+  I  +LL+     GA  +G+     I   K ++L
Sbjct: 343 YSRAGRIEDA---WNVVKSMPMEPDVMIWGALLN-----GARIHGDVETCEIAITKLLEL 394

Query: 173 DSILCAA---LIDMYAKCG 188
           D    +A   L ++YAK G
Sbjct: 395 DPANSSAYVLLSNVYAKLG 413


>gi|115456255|ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|29124127|gb|AAO65868.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711802|gb|ABF99597.1| expressed protein [Oryza sativa Japonica Group]
 gi|113550199|dbj|BAF13642.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|125588431|gb|EAZ29095.1| hypothetical protein OsJ_13153 [Oryza sativa Japonica Group]
 gi|215736898|dbj|BAG95827.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 602

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 188/425 (44%), Positives = 290/425 (68%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           G + DA  VF++MPK S V+W  +I G+ + G   +A+ LFREMQ+  ++ +   ++ +L
Sbjct: 178 GFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVDLFREMQANGVQADEVTVIGVL 237

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
           +A   LGAL+   WV  +++++ I     LC ALID  AKCG +D A+ VF     + V 
Sbjct: 238 AAATDLGALELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVV 297

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
           ++TS I  LAM G   EA  +FE MK  G+ PD +++I VL+ACSH G V++G  YF +M
Sbjct: 298 SWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAM 357

Query: 267 FDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEM 326
              +GI+P+++HY CMVD+ GRAG++E A  F+ +MP++P+ VIW +L+ ACR H   E+
Sbjct: 358 KVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHGRLEL 417

Query: 327 GQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDG 386
           G+ I   L+     H+  YI+LSN++  T + +   E+R+ M KR IK+ PGCS++ELDG
Sbjct: 418 GESITRSLLHEYPAHEANYIMLSNVFALTQRWKEKSEIRREMSKRGIKKVPGCSIVELDG 477

Query: 387 VVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEK 446
            VHEF+AGD SH + ++IY+  EE+ ++++  G+   T  V+ D++EE+KE  + +HSEK
Sbjct: 478 EVHEFIAGDESHPQYKDIYRMVEEMARELRRVGHIAATSEVLLDLDEEDKEGALQWHSEK 537

Query: 447 LALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCS 506
           LA+AF L+ T PG+ +R+VKN+R+CSDCH+A+K +S+V++R+I +RDR  +H F+DGSCS
Sbjct: 538 LAIAFALLRTPPGTQVRVVKNLRVCSDCHAAIKCISQVYRREIVVRDRSRFHRFKDGSCS 597

Query: 507 CLEYW 511
           C ++W
Sbjct: 598 CKDFW 602



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 113/237 (47%), Gaps = 46/237 (19%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGR--VRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +K  FA D +V N+LI  YS  G   + DAR VFD       V+W++MI GYVR G   +
Sbjct: 154 LKFGFATDQYVSNTLIHMYSCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSD 213

Query: 61  GLKLFDKMP----QRNDVS------------------W-----------------NSILG 81
            + LF +M     Q ++V+                  W                 N+++ 
Sbjct: 214 AVDLFREMQANGVQADEVTVIGVLAAATDLGALELARWVRRFVEREGIGKSVTLCNALID 273

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
            L + G VD A  VF  M +RS+VSW  +I   A  GR KEA+ +F EM+   + P+   
Sbjct: 274 TLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVA 333

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKC---IKLDSILCAALIDMYAKCGSIDLAMQ 195
            + +L+AC+  G +D G   +  ++ +     K++   C  ++DM+ + G ++ AM+
Sbjct: 334 FIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGC--MVDMFGRAGMVERAME 388



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 78/171 (45%), Gaps = 16/171 (9%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V +      V + N+LI   + CG V  A  VF+      VVSW S+I+     G   E 
Sbjct: 256 VEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEA 315

Query: 62  LKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQM-------PKRSLVSWVVL 110
           +++F++M       +DV++  +L      G VD+ C  F+ M       PK  +  +  +
Sbjct: 316 VRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPK--IEHYGCM 373

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161
           +  F + G  + A+   R M    ++PN  I  SL+SAC   G L+ G  +
Sbjct: 374 VDMFGRAGMVERAMEFVRTMP---IQPNPVIWRSLVSACRAHGRLELGESI 421


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/538 (41%), Positives = 321/538 (59%), Gaps = 41/538 (7%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDV 74
            +LI  Y+  G + +AR +FDE    DVVSWN+MI+GYV      E L+L+  M + N  
Sbjct: 135 TALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVK 194

Query: 75  --------------------------SW-------------NSILGGLVRFGSVDDACRV 95
                                     SW             N ++    + G V+ AC +
Sbjct: 195 PDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGL 254

Query: 96  FNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGAL 155
           F  + K+ ++SW  LI G       KEAL LF+EM      PN   ++S+L ACA LGA+
Sbjct: 255 FQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAI 314

Query: 156 DYGNWVYSYIQK--KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIF 213
           D G W++ YI K  K +   S L  +LIDMYAKCG I+ A QVF S   + +S++ + IF
Sbjct: 315 DIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIF 374

Query: 214 GLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIK 273
           G AM+G +  AF+LF  M+  GI PD I+++ +LSACSH G ++ G + F SM   + I 
Sbjct: 375 GFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKIT 434

Query: 274 PELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNM 333
           P+L+HY CM+DLLG  GL +EA+  I +MPM+PD VIW +LL AC++H N E+G+     
Sbjct: 435 PKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVELGESYAQN 494

Query: 334 LIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLA 393
           LI+ +  + G Y+LLSNIY    + +   ++R  +  + IK+APGCS IE+D VVHEF+ 
Sbjct: 495 LIKIEPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGCSSIEIDSVVHEFII 554

Query: 394 GDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGL 453
           GD+ H + +EIY+  EE+   ++  G+  +T  V+ ++EEE KE  + +HSEKLA+AFGL
Sbjct: 555 GDKFHPRNREIYRMLEEMEMLMEETGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGL 614

Query: 454 ICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           I TKPG+ + IVKN+R+C +CH A KL+SK++KR+I  RDR   H  +DG  SC +YW
Sbjct: 615 ISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRLHLLKDGVWSCHDYW 672



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 171/308 (55%), Gaps = 14/308 (4%)

Query: 2   VVKNSFAYDVFVKN-----SLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNG 56
           ++ NS+++   +K+     +LI+   + G V    +      DLD+    S+I+ Y +NG
Sbjct: 61  LLPNSYSFPFLLKSCAKSKALIEGQQIHGHVLKLGY------DLDMYVNTSLISMYAQNG 114

Query: 57  EILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQ 116
            + +  K+FD+   R+ VS+ +++ G    G +++A ++F+++  + +VSW  +ISG+ +
Sbjct: 115 RLEDAHKVFDRSSHRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVE 174

Query: 117 NGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSIL 176
               KEAL L+++M   +++P+ + +V+++SACAQ G+++ G  ++S+I+      +  +
Sbjct: 175 TCNFKEALELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKI 234

Query: 177 CAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGI 236
              LID+Y+KCG ++ A  +F     KDV ++ + I G        EA  LF+ M   G 
Sbjct: 235 VNVLIDLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGE 294

Query: 237 SPDSISYIAVLSACSHLGWVEKGFYYFHSMFD--VHGIKPELDHYACMVDLLGRAGLLEE 294
           SP+ ++ ++VL AC+HLG ++ G  + H   +  + G+         ++D+  + G +E 
Sbjct: 295 SPNDVTMLSVLPACAHLGAIDIG-RWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEA 353

Query: 295 AENFIASM 302
           A+    SM
Sbjct: 354 AKQVFDSM 361



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 119/269 (44%), Gaps = 34/269 (12%)

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
           F  +  A  +F  + + +L+ W  +  G A N     AL L+  M SL L PNS     L
Sbjct: 12  FDGLSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFL 71

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
           L +CA+  AL  G  ++ ++ K    LD  +  +LI MYA+ G ++ A +VF     + V
Sbjct: 72  LKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHV 131

Query: 206 SAYTSAIFGLAMNGH-----------SI--------------------EAFELFENMKSK 234
            +YT+ I G A  G+           S+                    EA EL+++M   
Sbjct: 132 VSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKT 191

Query: 235 GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEE 294
            + PD  + + V+SAC+  G +E G    HS  + HG    +     ++DL  + G +E 
Sbjct: 192 NVKPDESTMVTVVSACAQSGSIELG-RQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVET 250

Query: 295 AENFIASMPMKPDNVIWGTLLGACRVHRN 323
           A      +  K D + W TL+G    H N
Sbjct: 251 ACGLFQGLA-KKDVISWNTLIGG-HTHMN 277


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 227/551 (41%), Positives = 327/551 (59%), Gaps = 41/551 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V   S   DV    +LI  Y+  G +R A+ +FDE    DVVSWN+MI+GY   G   E 
Sbjct: 121 VFDRSSHRDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEA 180

Query: 62  LKLFDKMPQ--------------------------RNDVSW-------------NSILGG 82
           L+LF++M +                          R   SW             N+++  
Sbjct: 181 LELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDL 240

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G V+ AC +F  +  + ++SW  LI G+      KEAL LF+EM      PN   +
Sbjct: 241 YSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTM 300

Query: 143 VSLLSACAQLGALDYGNWVYSYIQK--KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
           +S+L ACA LGA+D G W++ YI K  K +   S L  +LIDMYAKCG I+ A QVF+S 
Sbjct: 301 LSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSM 360

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
             K +S++ + IFG AM+G +  +F+LF  M+  GI PD I+++ +LSACSH G ++ G 
Sbjct: 361 LHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGR 420

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
           + F SM   + + P+L+HY CM+DLLG +GL +EAE  I +M M+PD VIW +LL AC++
Sbjct: 421 HIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKM 480

Query: 321 HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS 380
           H N E+ +     LI+ +  +   YILLSNIY    + E+   +R  +  + +K+ PGCS
Sbjct: 481 HGNVELAESFAQNLIKIEPENPSSYILLSNIYASAGRWEDVARIRALLNGKCMKKVPGCS 540

Query: 381 LIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVI 440
            IE+D VV EF+ GD+ H + +EIY   EE+   ++  G+  +T  V+ ++EEE KE  +
Sbjct: 541 SIEVDSVVFEFVVGDKFHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGAL 600

Query: 441 GYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF 500
            +HSEKLA+AFGLI TKPG+ + IVKN+R+C +CH A KL+SK++KR+I  RDR  +HHF
Sbjct: 601 RHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLLSKIYKREIVARDRTRFHHF 660

Query: 501 EDGSCSCLEYW 511
            DG CSC +YW
Sbjct: 661 RDGVCSCNDYW 671



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 93/306 (30%), Positives = 166/306 (54%), Gaps = 8/306 (2%)

Query: 39  DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQ 98
           DLD+    S+I+ YV+N  + +  K+FD+   R+ VS+ +++ G    G +  A ++F++
Sbjct: 96  DLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTALITGYASRGDIRSAQKLFDE 155

Query: 99  MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
           +P + +VSW  +ISG+A+ G  KEAL LF EM  +++ P+ +  V++LSACA  G+++ G
Sbjct: 156 IPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELG 215

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
             V+S++       +  +  ALID+Y+KCG ++ A  +F     KDV ++ + I G    
Sbjct: 216 RQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHM 275

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD--VHGIKPEL 276
               EA  LF+ M   G +P+ ++ ++VL AC+HLG ++ G  + H   D  + G+    
Sbjct: 276 NLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIG-RWIHVYIDKRLKGVTNAS 334

Query: 277 DHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA----EMGQRIGN 332
                ++D+  + G +E A     SM  K  +  W  ++    +H  A    ++  R+  
Sbjct: 335 SLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSS-WNAMIFGFAMHGRADASFDLFSRMRK 393

Query: 333 MLIESD 338
           + IE D
Sbjct: 394 IGIEPD 399



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 112/263 (42%), Gaps = 33/263 (12%)

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
           F  +  A  VF  + + + + W  +I G A +  P  +L L+  M SL L PNS     L
Sbjct: 11  FDGLPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFL 70

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
           L +CA+      G  ++  + K    LD  +  +LI MY +   ++ A +VF     +DV
Sbjct: 71  LKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDV 130

Query: 206 SAYTSAIFGLAMNGH-------------------------------SIEAFELFENMKSK 234
            +YT+ I G A  G                                  EA ELFE M   
Sbjct: 131 VSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKM 190

Query: 235 GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEE 294
            + PD  +Y+ VLSAC+H G +E G    HS  D HG    L     ++DL  + G +E 
Sbjct: 191 NVRPDESTYVTVLSACAHSGSIELG-RQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVET 249

Query: 295 AENFIASMPMKPDNVIWGTLLGA 317
           A      +  K D + W TL+G 
Sbjct: 250 ACGLFQGLSYK-DVISWNTLIGG 271


>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 591

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 207/459 (45%), Positives = 306/459 (66%), Gaps = 1/459 (0%)

Query: 53  VRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLIS 112
           VR GE +  + + +       V  NS+L      G  + A +VF  M +R LV+W  +I+
Sbjct: 134 VREGEAIHSVTIRNGFESLVFVQ-NSLLHIYAACGDTESAYKVFELMKERDLVAWNSMIN 192

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKL 172
           GFA NGRP EAL LFREM    +EP+   +VSLLSA A+LGAL+ G  V+ Y+ K  +  
Sbjct: 193 GFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLSK 252

Query: 173 DSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMK 232
           +S +  +L+D+YAKCG+I  A +VF    +++  ++TS I GLA+NG   EA ELF+ M+
Sbjct: 253 NSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALELFKEME 312

Query: 233 SKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLL 292
            +G+ P  I+++ VL ACSH G +++GF YF  M +  GI P ++HY CMVDLL RAGL+
Sbjct: 313 GQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEHYGCMVDLLSRAGLV 372

Query: 293 EEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIY 352
           ++A  +I +MP++P+ VIW TLLGAC +H +  +G+   + L+  +  H G Y+LLSN+Y
Sbjct: 373 KQAYEYIQNMPVQPNAVIWRTLLGACTIHGHLGLGEIARSHLLNLEPKHSGDYVLLSNLY 432

Query: 353 VETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIV 412
               +  + + +R++M K  +K+ PG SL+EL   V+EF  GDRSH ++Q++Y   E+I 
Sbjct: 433 ASERRWSDVQVIRRSMLKDGVKKTPGYSLVELGNRVYEFTMGDRSHPQSQDVYALLEKIT 492

Query: 413 KKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICS 472
           + +K  GY   T +V+ DIEEEEKE  + YHSEK+A+AF L+ T PG+ IR++KN+R+C+
Sbjct: 493 ELLKLEGYVPHTANVLADIEEEEKEQALSYHSEKVAIAFMLLNTPPGTPIRVMKNLRVCA 552

Query: 473 DCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           DCH A+KL++K++ R+I IRDR  +HHF  GSCSC +YW
Sbjct: 553 DCHMAIKLIAKIYDREIVIRDRSRFHHFRGGSCSCKDYW 591



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 87/299 (29%), Positives = 132/299 (44%), Gaps = 75/299 (25%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + ++N F   VFV+NSL+  Y+ CG    A  VF+   + D+V+WNSMING+  NG   E
Sbjct: 143 VTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSMINGFALNGRPNE 202

Query: 61  GLKLFDKMP---------------------------------------QRNDVSWNSILG 81
            L LF +M                                         +N    NS+L 
Sbjct: 203 ALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLSKNSHVTNSLLD 262

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G++ +A RVF++M +R+ VSW  LI G A NG  +EAL LF+EM+   L P+   
Sbjct: 263 LYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALELFKEMEGQGLVPSEIT 322

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
            V +L AC+  G LD G   + Y ++               M  +CG I           
Sbjct: 323 FVGVLYACSHCGMLDEG---FEYFRR---------------MKEECGII----------- 353

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS---HLGWVE 257
              +  Y   +  L+  G   +A+E  +NM    + P+++ +  +L AC+   HLG  E
Sbjct: 354 -PRIEHYGCMVDLLSRAGLVKQAYEYIQNMP---VQPNAVIWRTLLGACTIHGHLGLGE 408



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 111/224 (49%), Gaps = 2/224 (0%)

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           A  VF  +   ++ +W  +I G+A++  P  A   +R+M    +EP++     LL A ++
Sbjct: 71  AYNVFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISK 130

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSA 211
              +  G  ++S   +   +    +  +L+ +YA CG  + A +VF    ++D+ A+ S 
Sbjct: 131 SLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSM 190

Query: 212 IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG 271
           I G A+NG   EA  LF  M  +G+ PD  + +++LSA + LG +E G      +  V G
Sbjct: 191 INGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKV-G 249

Query: 272 IKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
           +         ++DL  + G + EA+   + M  + + V W +L+
Sbjct: 250 LSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSER-NAVSWTSLI 292


>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 660

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 217/517 (41%), Positives = 330/517 (63%), Gaps = 9/517 (1%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K     +++V N LI  Y  C  +++A+ V DE    DVVSWNSM++ Y +NG   + 
Sbjct: 146 VLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDA 205

Query: 62  LKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRV---FNQMPKRSLVSWVVLISGF 114
           L+L  +M     + ND +  S+L  +    S D+   V   F ++ K+S++SW V+I+ +
Sbjct: 206 LELCREMEALNLKPNDCTMASLLPAVTNTTS-DNVLYVKEMFLKLTKKSVISWNVMIAMY 264

Query: 115 AQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDS 174
             N  PKEA+ L+ +M++  +EP+   +VS+L A   L AL  G  V+ + ++K +  + 
Sbjct: 265 VNNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPAYGDLSALSLGRRVHKFAERKKLLPNL 324

Query: 175 ILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK 234
           +L  ALIDMYAKCG +  A  VF+    +DV ++TS I      G   +A  +F  M++ 
Sbjct: 325 LLENALIDMYAKCGCLRDARAVFNQMQFRDVVSWTSIISAYGKCGQGRDAVAVFAEMRNS 384

Query: 235 GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEE 294
           G++PDSI++++VL+ACSH G ++ G YYF+ M +  GI P+L+H+AC+VDLLGRAG ++E
Sbjct: 385 GLNPDSIAFVSVLAACSHAGLLDDGRYYFNLMAEC-GITPKLEHFACVVDLLGRAGKIDE 443

Query: 295 AENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVE 354
           A  FI  MP++PD  +WG LL ACRV+ N  +G    + L+  +  H G Y+LLSNIY +
Sbjct: 444 AYGFIRQMPLEPDERVWGPLLSACRVYSNMNIGILAADKLLMLNPEHSGYYVLLSNIYAK 503

Query: 355 TLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKK 414
             +  +   +R  M ++ IK+ PG S +EL+  VH FLAGD SH ++++IY+  + +V K
Sbjct: 504 AGRWADVAAIRSIMERKGIKKLPGISNVELNDGVHTFLAGDHSHPQSKKIYEELDVLVGK 563

Query: 415 IKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDC 474
           +K  GY  ET S + D+EEE+KE  +  HSEKLA+AF +I TKPG+ IR+ KN+R+C DC
Sbjct: 564 MKELGYMPETDSALHDVEEEDKEYHLAVHSEKLAVAFAIINTKPGTPIRVTKNLRVCGDC 623

Query: 475 HSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           H A KL+SK+ +R+I IRD   +HHF++G CSC +YW
Sbjct: 624 HVAAKLISKIAEREIIIRDTHRFHHFQEGCCSCGDYW 660



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 133/295 (45%), Gaps = 25/295 (8%)

Query: 63  KLFDKMPQRNDVSWNSILGGLVRFGSVDDAC-------RVFNQMPKRSLVSWVVLISGFA 115
           KL  K+     + WN  +G  ++   V  AC        +F+++  +++V + V+I  + 
Sbjct: 39  KLHGKVLNDQYLRWNPSVG--IKLMRVYAACGEPGLARHIFDEITDKNVVFFNVMIRSYV 96

Query: 116 QNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI 175
            N   K+AL +++ M +    P+      +L A ++  +L  G  ++  + K  + L+  
Sbjct: 97  NNHLYKDALLVYKTMYTQGFVPDMYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDLNLY 156

Query: 176 LCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG 235
           +   LI MY KC S+  A QV      +DV ++ S +   A NG   +A EL   M++  
Sbjct: 157 VGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALN 216

Query: 236 ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA 295
           + P+  +  ++L A ++         Y   MF +   K  +  +  M+ +     + +EA
Sbjct: 217 LKPNDCTMASLLPAVTNT--TSDNVLYVKEMF-LKLTKKSVISWNVMIAMYVNNSMPKEA 273

Query: 296 ENFIASMP---MKPDNVIWGTLLGAC----------RVHRNAEMGQRIGNMLIES 337
               + M    ++PD V   ++L A           RVH+ AE  + + N+L+E+
Sbjct: 274 VVLYSQMEANGVEPDVVSIVSVLPAYGDLSALSLGRRVHKFAERKKLLPNLLLEN 328


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 229/582 (39%), Positives = 336/582 (57%), Gaps = 72/582 (12%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDES------------------------ 37
           V+K  +  D++V  SLI  Y   GR+ DAR VFD+S                        
Sbjct: 129 VLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASA 188

Query: 38  ----DDL---DVVSWNSMINGYVRNGEILEGLKLFDKMPQ-------------------- 70
               D++   DVVSWN+MI+GY   G   E L+LF +M +                    
Sbjct: 189 QKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQS 248

Query: 71  ------RNDVSW-------------NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLI 111
                 R   SW             N+++   ++ G V+ AC +F  +  + ++SW  LI
Sbjct: 249 ASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLI 308

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK--KC 169
            G+      KEAL LF+EM      PN   ++S+L ACA LGA++ G W++ YI K  K 
Sbjct: 309 GGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKG 368

Query: 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFE 229
           +   S    +LIDMYAKCG I+ A QVF S  ++ +S++ + IFG AM+G +  AF++F 
Sbjct: 369 VANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFS 428

Query: 230 NMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRA 289
            M+   I PD I+++ +LSACSH G ++ G + F SM + + I P+L+HY CM+DLLG +
Sbjct: 429 RMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHS 488

Query: 290 GLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLS 349
           GL +EAE  I +M M+PD VIW +LL AC+++ N E+G+     LI+ +  + G Y+LLS
Sbjct: 489 GLFKEAEEMINTMEMEPDGVIWCSLLKACKMYANVELGESYAQNLIKIEPKNPGSYVLLS 548

Query: 350 NIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWE 409
           NIY    +     ++R  +  + +K+ PGCS IE+D VVHEF+ GD+ H + +EIY   E
Sbjct: 549 NIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLE 608

Query: 410 EIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIR 469
           E+   ++  G+  +T  V+ ++EEE KE  + +HSEKLA+AFGLI TKPG+ + IVKN+R
Sbjct: 609 EMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLR 668

Query: 470 ICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           +C +CH A KL+SK++KR+I  RDR  +HHF DG CSC +YW
Sbjct: 669 VCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 710



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 114/263 (43%), Gaps = 33/263 (12%)

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
           F  +  A  VF  + + +L+ W  +  G A +  P  AL L+  M SL L PN      L
Sbjct: 50  FDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFL 109

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
           L +CA+  A   G  ++ ++ K    LD  +  +LI MY + G ++ A +VF     +DV
Sbjct: 110 LKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDV 169

Query: 206 SAYTSAIFGLAMNGH-------------------------------SIEAFELFENMKSK 234
            +YT+ I G A  G+                               + EA ELF+ M   
Sbjct: 170 VSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKT 229

Query: 235 GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEE 294
            + PD  + ++V+SAC+    +E G    HS  D HG    L     ++DL  + G +E 
Sbjct: 230 NVRPDESTMVSVVSACAQSASIELG-RQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVET 288

Query: 295 AENFIASMPMKPDNVIWGTLLGA 317
           A      +  K D + W TL+G 
Sbjct: 289 ACGLFEGLSYK-DVISWNTLIGG 310


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 211/533 (39%), Positives = 316/533 (59%), Gaps = 31/533 (5%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DV   N++I  Y+  G +  A+ +F+ES   DV +W +M++GYV+NG + E  K FD+MP
Sbjct: 231 DVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEMP 290

Query: 70  QRNDVSWNSILGGLVRF-------------------------------GSVDDACRVFNQ 98
            +N++S+N++L G V++                               G +  A ++F+ 
Sbjct: 291 VKNEISYNAMLAGYVQYKKMVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDM 350

Query: 99  MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
           MP+R  VSW  +ISG+AQNG  +EAL +F EM+      N +     LS CA + AL+ G
Sbjct: 351 MPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELG 410

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
             V+  + K   +    +  AL+ MY KCGS D A  VF    +KDV ++ + I G A +
Sbjct: 411 KQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARH 470

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDH 278
           G   +A  LFE+MK  G+ PD I+ + VLSACSH G +++G  YF+SM   + +KP   H
Sbjct: 471 GFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKH 530

Query: 279 YACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338
           Y CM+DLLGRAG LEEAEN + +MP  P    WG LLGA R+H N E+G++   M+ + +
Sbjct: 531 YTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASRIHGNTELGEKAAEMVFKME 590

Query: 339 QNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSH 398
             + G Y+LLSN+Y  + +  +  ++R  MR+  +++  G S +E+   +H F  GD  H
Sbjct: 591 PQNSGMYVLLSNLYAASGRWVDVGKMRSKMREAGVQKVTGYSWVEVQNKIHTFSVGDCFH 650

Query: 399 EKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKP 458
            +   IY F EE+  K++  GY   T+ V+ D+EEEEKE ++ YHSEKLA+AFG++    
Sbjct: 651 PEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPA 710

Query: 459 GSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           G  IR++KN+R+C DCH+A+K +SK+  R I +RD   +HHF +G CSC +YW
Sbjct: 711 GRPIRVMKNLRVCQDCHNAIKHISKIVGRLIILRDSHRFHHFSEGICSCGDYW 763



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 151/302 (50%), Gaps = 20/302 (6%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDV 74
           N++I  Y    +   AR +FD+  + D+ SWN M+ GYVRN  + E  KLFD MP+++ V
Sbjct: 81  NAMISGYLRNAKFSLARDLFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVV 140

Query: 75  SWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD 134
           SWN++L G  + G VD+A  VFN+MP R+ +SW  L++ +  NGR KEA  LF    + +
Sbjct: 141 SWNAMLSGYAQNGFVDEAREVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFESQSNWE 200

Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
           L   +     L+    +   L     ++  +  +    D I    +I  YA+ G +  A 
Sbjct: 201 LISWNC----LMGGYVKRNMLGDARQLFDRMPVR----DVISWNTMISGYAQVGDLSQAK 252

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
           ++F+    +DV  +T+ + G   NG   EA + F+ M  K    + ISY A+L+     G
Sbjct: 253 RLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEMPVK----NEISYNAMLA-----G 303

Query: 255 WVE-KGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGT 313
           +V+ K       +F+    +  +  +  M+   G+ G + +A      MP + D V W  
Sbjct: 304 YVQYKKMVIAGELFEAMPCR-NISSWNTMITGYGQNGGIAQARKLFDMMPQR-DCVSWAA 361

Query: 314 LL 315
           ++
Sbjct: 362 II 363



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 98/346 (28%), Positives = 158/346 (45%), Gaps = 47/346 (13%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DV   N+++  Y+  G V +AR VF++    + +SWN ++  YV NG + E  +LF+   
Sbjct: 138 DVVSWNAMLSGYAQNGFVDEAREVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFESQS 197

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE 129
               +SWN ++GG V+   + DA ++F++MP R ++SW  +ISG+AQ G   +A  LF E
Sbjct: 198 NWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNE 257

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALD----------------YGNWVYSYIQKKCIKLD 173
               D+        +++S   Q G +D                Y   +  Y+Q K + + 
Sbjct: 258 SPIRDV----FTWTAMVSGYVQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIA 313

Query: 174 SILCAA-----------LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSI 222
             L  A           +I  Y + G I  A ++F     +D  ++ + I G A NGH  
Sbjct: 314 GELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYE 373

Query: 223 EAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG--IKPELDHYA 280
           EA  +F  MK  G S +  ++   LS C+ +  +E G         VHG  +K   +   
Sbjct: 374 EALNMFVEMKRDGESSNRSTFSCALSTCADIAALELG-------KQVHGQVVKAGFE-TG 425

Query: 281 CMVD--LLG---RAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           C V   LLG   + G  +EA +    +  K D V W T++     H
Sbjct: 426 CFVGNALLGMYFKCGSTDEANDVFEGIEEK-DVVSWNTMIAGYARH 470



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 140/269 (52%), Gaps = 21/269 (7%)

Query: 39  DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQ 98
           D D+V+WN  I+ ++RNG     L++F+ MP+R+ VS+N+++ G +R      A  +F++
Sbjct: 43  DPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDK 102

Query: 99  MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV--SLLSACAQLGALD 156
           MP+R L SW V+++G+ +N R  EA  LF      DL P   ++   ++LS  AQ G +D
Sbjct: 103 MPERDLFSWNVMLTGYVRNRRLGEAHKLF------DLMPKKDVVSWNAMLSGYAQNGFVD 156

Query: 157 YGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLA 216
               V++ +  +    +SI    L+  Y   G +  A ++F S  + ++ ++   + G  
Sbjct: 157 EAREVFNKMPHR----NSISWNGLLAAYVHNGRLKEARRLFESQSNWELISWNCLMGGYV 212

Query: 217 MNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPEL 276
                 +A +LF+ M  +    D IS+  ++S  + +G + +       +F+   I+ ++
Sbjct: 213 KRNMLGDARQLFDRMPVR----DVISWNTMISGYAQVGDLSQA----KRLFNESPIR-DV 263

Query: 277 DHYACMVDLLGRAGLLEEAENFIASMPMK 305
             +  MV    + G+++EA  +   MP+K
Sbjct: 264 FTWTAMVSGYVQNGMVDEARKYFDEMPVK 292



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 89/196 (45%), Gaps = 13/196 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VVK  F    FV N+L+  Y  CG   +A  VF+  ++ DVVSWN+MI GY R+G   + 
Sbjct: 417 VVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQA 476

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMP-----KRSLVSWVVLIS 112
           L LF+ M +     ++++   +L      G +D     F  M      K +   +  +I 
Sbjct: 477 LVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMID 536

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKL 172
              + GR +EA  L R M     +P +A   +LL A    G  + G      + K   + 
Sbjct: 537 LLGRAGRLEEAENLMRNMP---FDPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQ- 592

Query: 173 DSILCAALIDMYAKCG 188
           +S +   L ++YA  G
Sbjct: 593 NSGMYVLLSNLYAASG 608


>gi|357124715|ref|XP_003564043.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Brachypodium distachyon]
          Length = 599

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 199/471 (42%), Positives = 309/471 (65%), Gaps = 3/471 (0%)

Query: 44  SWNSMINGYVRNGEILEGLKLFDKMPQRND---VSWNSILGGLVRFGSVDDACRVFNQMP 100
           S+N+++  Y+ NG      +LF       D   VSW +++GGL R G VDDA ++F+ MP
Sbjct: 129 SFNALLAAYLANGRADLASRLFGSCSSPGDLDVVSWTTMVGGLCRLGLVDDARKLFDGMP 188

Query: 101 KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNW 160
           +R+L+SW  +ISG+ + GR  +AL +F +M++L +E N  +  S + AC   G L  G  
Sbjct: 189 ERNLISWNAMISGYVKAGRFLDALEVFDQMRALGIEGNGFVAASAVVACTGAGVLARGRE 248

Query: 161 VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGH 220
           V+ ++++  I +D  L  A++DMY KCGS++ A  VF     K ++++   I GLA++G 
Sbjct: 249 VHRWVEQSGITMDEKLATAVVDMYCKCGSVEEAWHVFKVLPTKGLTSWNCMIGGLAVHGR 308

Query: 221 SIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA 280
             +A ELF  M+ + ++PD ++ + VL+AC+H G V  G  YF+ +   +GI+P+++HY 
Sbjct: 309 CKDAIELFHEMEREDVAPDDVTLVNVLTACAHTGMVSDGHNYFNYIVQRYGIEPKMEHYG 368

Query: 281 CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQN 340
           CMVDL GRAGLL+EA+  I  MPM+PD  + G L GAC++HR+ ++G+ IG  +IE D  
Sbjct: 369 CMVDLFGRAGLLDEAKKVIDDMPMEPDIGVLGALFGACKIHRDLDLGEAIGWRVIELDPQ 428

Query: 341 HDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEK 400
           + GRY+LL+N+     +  +  +VR+ M +R + +  G S+IE+DG V EF  G   H +
Sbjct: 429 NSGRYVLLANLLASAGQWVDVAKVRRLMDERNVSKEAGRSVIEIDGEVCEFQCGSLCHAQ 488

Query: 401 TQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGS 460
            +EI+   +++++KI+  GY  +T  V+ DI EEEKE  + YHSEKLA+AFGL+ T+PG 
Sbjct: 489 EKEIFAAVKDMMRKIRLEGYMPDTSDVLHDITEEEKEVPLQYHSEKLAIAFGLLRTRPGD 548

Query: 461 VIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            +RI KN+R+C DCH A K +S+VF+R+I +RDR  +HHF+DG+CSC +YW
Sbjct: 549 TVRITKNLRVCRDCHEATKFISRVFEREIVVRDRNRFHHFKDGTCSCRDYW 599


>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
 gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 211/474 (44%), Positives = 311/474 (65%), Gaps = 17/474 (3%)

Query: 50  NGYVRN-----------GEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQ 98
           +GYV N           G++    KLFD+MP ++ V+ ++++         + A +VF  
Sbjct: 12  HGYVANNILSRYSKCVVGDLNLACKLFDEMPHKDTVTLDTMITAYF-----ESAYKVFEL 66

Query: 99  MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
           MP++ +V+W  +I+GFA NG+P EAL L++ M S  +EP+   +VSLLSACA+L  L  G
Sbjct: 67  MPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAELATLVLG 126

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG-DKDVSAYTSAIFGLAM 217
              + Y+ K  +  +     AL+D+YAKCG+I  A ++F   G +++V ++TS I GLA+
Sbjct: 127 RRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTSLIVGLAV 186

Query: 218 NGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELD 277
           NG   EA E F++M+ +G+ P  I+++ VL ACSH G V +GF YF  M + + I P ++
Sbjct: 187 NGFGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMKEQYDIVPRIE 246

Query: 278 HYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIES 337
           HY CMVDLLGRAGLL+EA ++I  MP++P+ VIW TLLGAC +H +  +G      L++ 
Sbjct: 247 HYGCMVDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHGHLGLGAFARARLLQL 306

Query: 338 DQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRS 397
           +    G Y+LLSN+Y    +  +  EVR+TM    +++ PG SL+EL   VHEF+ GDR+
Sbjct: 307 EPKDSGDYVLLSNLYASEQRWSDVHEVRRTMLSEGVRKTPGYSLVELGNHVHEFVMGDRT 366

Query: 398 HEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTK 457
           H +++ IY+   E+  K+K  GY   T +V+ DIEEEEKE+ + YHSEK+A+AF LI T 
Sbjct: 367 HPQSEAIYKMLVEMAMKLKLAGYVPHTANVLADIEEEEKESALFYHSEKIAIAFMLINTL 426

Query: 458 PGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           PG+ IRI+KN+R+C+DCH A+KL+SKVF+R I +RD   +HHF DGSCSC +YW
Sbjct: 427 PGTPIRIIKNLRVCADCHFAIKLISKVFERDIVVRDCSRFHHFRDGSCSCRDYW 480



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 40/166 (24%)

Query: 33  VFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP----------------------- 69
           VF+   + D+V+WNS+ING+  NG+  E L L+ +M                        
Sbjct: 63  VFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAELAT 122

Query: 70  ----------------QRNDVSWNSILGGLVRFGSVDDACRVFNQMP-KRSLVSWVVLIS 112
                            +N  + N++L    + G++ +A ++F++M  +R++VSW  LI 
Sbjct: 123 LVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTSLIV 182

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
           G A NG  KEAL  F++M+   L P+    V +L AC+  G ++ G
Sbjct: 183 GLAVNGFGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEG 228



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 83/169 (49%), Gaps = 13/169 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESD-DLDVVSWNSMINGYVRNGEILE 60
           +VK     ++   N+L+  Y+ CG + +AR +FDE   + +VVSW S+I G   NG   E
Sbjct: 133 MVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTSLIVGLAVNGFGKE 192

Query: 61  GLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLI 111
            L+ F  M +     +++++  +L      G V++    F +M ++      +  +  ++
Sbjct: 193 ALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMKEQYDIVPRIEHYGCMV 252

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNW 160
               + G  KEA   +  +Q + L+PN+ I  +LL AC   G L  G +
Sbjct: 253 DLLGRAGLLKEA---YDYIQDMPLQPNAVIWRTLLGACTIHGHLGLGAF 298


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/550 (38%), Positives = 333/550 (60%), Gaps = 40/550 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VVK     D++++ +L+  Y+ CG ++ AR++F+     + V W SMI+GY++N    E 
Sbjct: 105 VVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEA 164

Query: 62  LKLFDKMPQRN----------------------------------DVSWNSILGGLV--- 84
           L L+ KM +                                    D+   ++LG  +   
Sbjct: 165 LLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNM 224

Query: 85  --RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQS-LDLEPNSAI 141
             + G +  A +VF+Q+  + + +W  LI G+ +N R  EAL LFRE+    ++ PN   
Sbjct: 225 YAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVT 284

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           +++++SACAQLG L+ G WV+ YI +        L  +LIDM++KCG ID A ++F S  
Sbjct: 285 ILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMS 344

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
            KD+ ++ S + GLA++G   EA   F  M++  + PD I++I VL+ACSH G V++G  
Sbjct: 345 YKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKK 404

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            F+ +  ++G++ + +HY CMVDLL RAGLL EA  FI  MP++PD  IWG++LGACRV+
Sbjct: 405 LFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVY 464

Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
            N E+G+     L+E +  +DG YILLSNIY         ++VR+ M ++ I++ PGCS 
Sbjct: 465 NNLELGEEAARCLLELEPTNDGVYILLSNIYARRKMWNEVKKVRELMNEKGIQKTPGCSS 524

Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIG 441
           + +D + H FLAGD SH +  EI     ++ +K+K  GY  +T  V+ +I++ +KE  + 
Sbjct: 525 VVIDNIAHSFLAGDCSHPEIAEISIMLRQVREKLKLVGYVADTSEVLLNIDDNKKEESVS 584

Query: 442 YHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
            HSEKLAL +GL+ ++ G  I I+KN+R+CSDCH+ +KLVSK+++R+I++RDR  +HHF+
Sbjct: 585 QHSEKLALCYGLLKSEIGGRIVILKNLRVCSDCHTLIKLVSKIYQRQITLRDRNRFHHFK 644

Query: 502 DGSCSCLEYW 511
           DGSCSC +YW
Sbjct: 645 DGSCSCRDYW 654



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 114/264 (43%), Gaps = 18/264 (6%)

Query: 75  SWNSILGGLVRFGS--VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQS 132
           S N ++  ++  GS  V  A  VF       +++W  ++  F  +  P+ AL  + EM  
Sbjct: 12  SLNKLIAHVLSMGSLGVGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLE 71

Query: 133 LDLE-PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSID 191
                P+     SLL  CA L     G  ++  + K  +  D  +   L++MYA CG + 
Sbjct: 72  RSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLK 131

Query: 192 LAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS 251
            A  +F   G ++   +TS I G   N    EA  L++ M+  G SPD ++   ++SAC+
Sbjct: 132 SARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACA 191

Query: 252 HLGWVEKGFYYFHSMFDVHGIKPELDHYAC------MVDLLGRAGLLEEAENFIASMPMK 305
            L  +  G         +H    E+D   C      +V++  + G L+ A      +  K
Sbjct: 192 ELKDLGVG-------MKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDK 244

Query: 306 PDNVIWGTLL-GACRVHRNAEMGQ 328
            D   W  L+ G  + +R+ E  Q
Sbjct: 245 -DVYAWSALIFGYVKNNRSTEALQ 267


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 224/547 (40%), Positives = 324/547 (59%), Gaps = 41/547 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V   S   DV    +LI+ Y+  G +  A+ +FDE    DVVSWN++I+GY   G   E 
Sbjct: 160 VFDQSSHRDVVSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEA 219

Query: 62  LKLFDKMPQRNDV--------------------------SW-------------NSILGG 82
           L+LF +M + N                            SW             N+++  
Sbjct: 220 LELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDL 279

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
            ++ G V+ A  +F  +  + ++SW  LI G+      KEAL LF+EM      PN   +
Sbjct: 280 YIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTM 339

Query: 143 VSLLSACAQLGALDYGNWVYSYIQK--KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
           +S+L ACA LGA+D G W++ YI K  K +   S L  +LIDMYAKCG I+ A QVF S 
Sbjct: 340 LSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSM 399

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
            ++ +S++ + IFG AM+G +  AF++F  M+  GI PD I+++ +LSACSH G ++ G 
Sbjct: 400 LNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGR 459

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
           + F SM + + I P+L+HY CM+DLLG +GL +EAE  I SM M PD VIW +LL AC++
Sbjct: 460 HIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDGVIWCSLLKACKM 519

Query: 321 HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS 380
           H N E+G+     LI+ +  + G Y+LLSNIY    +     + R  +  + +K+ PGCS
Sbjct: 520 HGNVELGESFAQNLIKIEPKNSGSYVLLSNIYATAGRWNEVAKRRALLNDKGMKKVPGCS 579

Query: 381 LIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVI 440
            IE+D VVHEF+ GD+ H + +EIY   EE+   ++  G+  +T  V+ ++EEE KE  +
Sbjct: 580 SIEIDSVVHEFIIGDKLHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGAL 639

Query: 441 GYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF 500
            +HSEKLA+AFGLI TKPG+ + IVKN+R+C +CH A KL+SK++KR+I  RDR  +HHF
Sbjct: 640 RHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHF 699

Query: 501 EDGSCSC 507
            DG CSC
Sbjct: 700 XDGVCSC 706



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 88/266 (33%), Positives = 151/266 (56%), Gaps = 3/266 (1%)

Query: 39  DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQ 98
           DLD+    S+I  YV+NG   +  K+FD+   R+ VS+ +++ G    G +  A ++F++
Sbjct: 135 DLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGYIXSAQKMFDE 194

Query: 99  MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
           +P + +VSW  LISG+A+ G  KEAL LF+EM   +++P+ + +V++LSACAQ  +++ G
Sbjct: 195 IPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELG 254

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
             V+S+I       +  +  ALID+Y KCG ++ A  +F     KDV ++ + I G    
Sbjct: 255 RQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHM 314

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD--VHGIKPEL 276
               EA  LF+ M   G SP+ ++ +++L AC+HLG ++ G  + H   D  + G+    
Sbjct: 315 NLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIG-RWIHVYIDKRLKGVSNPS 373

Query: 277 DHYACMVDLLGRAGLLEEAENFIASM 302
                ++D+  + G +E A+    SM
Sbjct: 374 SLRTSLIDMYAKCGDIEAAQQVFDSM 399



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 130/304 (42%), Gaps = 41/304 (13%)

Query: 53  VRNGEILEGLKLFD-KMPQRNDVSWNSILGGLVRFGSVDD-------ACRVFNQMPKRSL 104
           + N + L+ L++   KM +    + N  L  L+ F  +         A  VF+ + + +L
Sbjct: 9   LHNCKTLQSLRIIHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDSIQEPNL 68

Query: 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSY 164
           + W  +  G A +  P  AL L+  M SL L PNS     LL ACA+  A   G  ++ +
Sbjct: 69  LIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQQIHGH 128

Query: 165 IQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSI-- 222
           + K    LD  +  +LI MY K G  + A +VF     +DV +YT+ I G A NG+    
Sbjct: 129 VLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGYIXSA 188

Query: 223 -----------------------------EAFELFENMKSKGISPDSISYIAVLSACSHL 253
                                        EA ELF+ M    + PD  + + VLSAC+  
Sbjct: 189 QKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQS 248

Query: 254 GWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGT 313
             +E G    HS  D HG    L     ++DL  + G +E A      +  K D + W T
Sbjct: 249 ASIELG-RQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYK-DVISWNT 306

Query: 314 LLGA 317
           L+G 
Sbjct: 307 LIGG 310


>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
          Length = 607

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 214/553 (38%), Positives = 341/553 (61%), Gaps = 43/553 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++N  + D F+   L++  S C  +  A  +F  + + +V  + ++I+G+V +G   + 
Sbjct: 55  LIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDA 114

Query: 62  LKLFDKMPQRNDVSWNSILGG------------------------------LVRF----- 86
           ++L+ +M   + +  N ++                                LVR      
Sbjct: 115 IQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMEL 174

Query: 87  ----GSVDDACRVFNQMPK----RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPN 138
               G + DA RVF +MP+    +  V W  +I GF +N     AL  FR MQ  ++ PN
Sbjct: 175 YGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPN 234

Query: 139 SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH 198
              +V +LSAC+QLGAL+ G WV+SY++K  I+L+  +  ALI+MY++CGSID A  VF 
Sbjct: 235 EFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFD 294

Query: 199 SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEK 258
              D+DV  Y + I GL+MNG S +A ELF  M  + + P +++++ VL+ACSH G V+ 
Sbjct: 295 EMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDF 354

Query: 259 GFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
           GF  FHSM   +G++P+++HY CMVDLLGR G LEEA + I +M M PD+++ GTLL AC
Sbjct: 355 GFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSAC 414

Query: 319 RVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPG 378
           ++H+N E+G+++  +L +  Q   G Y+LLS++Y  + K + A +VR  M++  +++ PG
Sbjct: 415 KMHKNLELGEQVAKVLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPG 474

Query: 379 CSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKET 438
           CS IE++  +HEFL GD  H + + IY+  EE+ + ++  GY+ E   V+ DIE+ EKE 
Sbjct: 475 CSSIEVNNEIHEFLLGDLRHPRKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEW 534

Query: 439 VIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYH 498
            +  HSE+LA+ +GLI T+P +VIR++KN+R+C DCHSA+KL++K+ +RK+ +RDR  +H
Sbjct: 535 ALAIHSERLAICYGLISTEPCTVIRVMKNLRVCYDCHSAIKLIAKITRRKVVVRDRNRFH 594

Query: 499 HFEDGSCSCLEYW 511
           +FE+G+CSC +YW
Sbjct: 595 YFENGACSCGDYW 607


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 214/539 (39%), Positives = 321/539 (59%), Gaps = 40/539 (7%)

Query: 13  VKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM---- 68
           V   LI  Y+ CG +  AR +FD  +  D+V++N++I+GY  NG +   ++LF ++    
Sbjct: 258 VVTGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGMG 317

Query: 69  ------------PQRNDVSWNSILGGL-----------------------VRFGSVDDAC 93
                       P  +      + G L                        RF  +D A 
Sbjct: 318 LRPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSAR 377

Query: 94  RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153
           R F+ MP++++ SW  +ISG+AQNG  + A+ALF++MQ+L++ PN   + S LSACAQLG
Sbjct: 378 RAFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLG 437

Query: 154 ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIF 213
           AL  G WV+  I  + ++L+  +  ALIDMY KCGSI  A  +F S  +K+V ++   I 
Sbjct: 438 ALSLGKWVHKIIANEKLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVMIS 497

Query: 214 GLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIK 273
           G  ++G   EA +L+++M    + P S ++++VL ACSH G V++G   F SM   +GI 
Sbjct: 498 GYGLHGQGAEALKLYKDMMDAHLHPTSSTFLSVLYACSHGGLVKEGTTVFRSMTSDYGIT 557

Query: 274 PELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNV-IWGTLLGACRVHRNAEMGQRIGN 332
           P ++H  CMVDLLGRAG L+EA   I+  P       IWG LLGAC VH++ ++ +    
Sbjct: 558 PGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGIWGALLGACMVHKDGDLAKLASQ 617

Query: 333 MLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFL 392
            L E +  + G Y+LLSN+Y    +   A  VR+  + RK+ + PGC+LIE+    H F+
Sbjct: 618 KLFELEPENTGYYVLLSNLYTSKKQYSEAAVVRQEAKSRKLVKTPGCTLIEIGDRPHVFM 677

Query: 393 AGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFG 452
           AGDR+H ++  IY + E++  K+   GY  +T + ++D+EEEEKE ++  HSEKLA+AFG
Sbjct: 678 AGDRAHPQSDAIYLYLEKLTAKMIEAGYRPDTEAALYDVEEEEKEHMVKVHSEKLAIAFG 737

Query: 453 LICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           L+ T+PG+ IRI+KN+R+C DCH+A K++SKV +R I +RD   +HHF DG CSC +YW
Sbjct: 738 LLNTEPGTEIRIIKNLRVCLDCHNATKIISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 796



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 169/365 (46%), Gaps = 54/365 (14%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + V + FA D FV ++L + Y    R  DAR VFD     D V WN+++ G +   E LE
Sbjct: 148 LAVASGFAADNFVASALAKLYFTLSRGNDARKVFDAVPSPDTVLWNTLLAG-LSGSEALE 206

Query: 61  GL--------------KLFDKMPQRNDVSWNSILG--------------------GLVRF 86
                            L   +P   +V+ N+ +G                    GL+  
Sbjct: 207 AFVRMAGAGSVRPDSTTLASVLPAAAEVA-NTTMGRCVHAFGEKCGLAQHEHVVTGLISL 265

Query: 87  ----GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
               G ++ A  +F++M    LV++  LISG++ NG    ++ LF+E+  + L P+S+ L
Sbjct: 266 YAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGMGLRPSSSTL 325

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           V+L+   +  G       +++++ K  +  ++ +  AL  +Y +   +D A + F +  +
Sbjct: 326 VALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRAFDAMPE 385

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           K + ++ + I G A NG +  A  LF+ M++  + P+ ++  + LSAC+ LG +  G + 
Sbjct: 386 KTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGALSLGKW- 444

Query: 263 FHSMFDVHGI----KPELDHY--ACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLG 316
                 VH I    K EL+ Y    ++D+  + G + EA     SM  K + V W  ++ 
Sbjct: 445 ------VHKIIANEKLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNK-NVVSWNVMIS 497

Query: 317 ACRVH 321
              +H
Sbjct: 498 GYGLH 502



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 72/158 (45%), Gaps = 11/158 (6%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++       +V+V  +LI  Y  CG + +AR +FD  D+ +VVSWN MI+GY  +G+  E
Sbjct: 448 IIANEKLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVMISGYGLHGQGAE 507

Query: 61  GLKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLI 111
            LKL+  M          ++ S+L      G V +   VF  M     ++        ++
Sbjct: 508 ALKLYKDMMDAHLHPTSSTFLSVLYACSHGGLVKEGTTVFRSMTSDYGITPGIEHCTCMV 567

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
               + G+ KEA  L  E     + P   I  +LL AC
Sbjct: 568 DLLGRAGQLKEAFELISEFPKSAVGPG--IWGALLGAC 603


>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
 gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
          Length = 642

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 206/502 (41%), Positives = 318/502 (63%), Gaps = 1/502 (0%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ 70
           +FV  +LI  Y+ C  +  AR VFDE  + ++V+WN+++    R   + +  ++F  MP 
Sbjct: 141 LFVGTTLISMYAECACLVFARKVFDEMIEPNIVAWNAIVAACFRCEGVKDAEQVFRCMPI 200

Query: 71  RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM 130
           RN  SWN +L G  + G +  A  VF +MP +  VSW  +I GFA NG   +A A FRE+
Sbjct: 201 RNLTSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFNDAFAFFREV 260

Query: 131 QSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSI 190
           +   + PN   L  +LSACAQ GA ++G  ++ +++K        +  ALID Y+KCG++
Sbjct: 261 RREGMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQIISVNNALIDTYSKCGNL 320

Query: 191 DLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250
           D+A  VF +   +   ++T+ I G+AM+G+  EA  LF  M+   I PDSI++I++L AC
Sbjct: 321 DMARLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKPDSITFISILYAC 380

Query: 251 SHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVI 310
           SH G V+ G  YF  M + +GI+P ++HY CMVDL GRAG L++A +F+  MP+ P++++
Sbjct: 381 SHAGLVDLGCSYFSRMVNTYGIEPVIEHYGCMVDLYGRAGKLQQAYDFVCQMPISPNDIV 440

Query: 311 WGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370
           W TLLGAC +H N  +  ++   L E D  + G ++LLSNIY    K ++   +R++M  
Sbjct: 441 WRTLLGACSIHGNLYLAGQVKRQLSELDPENSGDHVLLSNIYAVAGKWKDVAALRRSMTH 500

Query: 371 RKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIK-NYGYNVETRSVMF 429
           +++K+ PG S+IE++ +++ F+AG++ ++   E +Q   EI+ +++   GY  E  SV+ 
Sbjct: 501 QRLKKTPGWSMIEVNRIIYSFVAGEKQNDIAVEAHQKLREIMSRLRIEGGYVPEVGSVLH 560

Query: 430 DIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKI 489
           DIE EEKE  +  HSEKLA+AFG+     G  IR+VKN+RIC DCH+ MKL+SKV++ +I
Sbjct: 561 DIEVEEKEDSVSQHSEKLAVAFGMAKLPRGRAIRVVKNLRICRDCHTVMKLISKVYEVEI 620

Query: 490 SIRDRKHYHHFEDGSCSCLEYW 511
            +RDR  +H F  GSCSC +YW
Sbjct: 621 VVRDRSRFHSFTHGSCSCRDYW 642



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 12/163 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V K+ F   + V N+LI  YS CG +  AR VFD       VSW +MI G   +G   E 
Sbjct: 295 VEKSGFLQIISVNNALIDTYSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMAMHGYGEEA 354

Query: 62  LKLFDKMPQRN----DVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVV-----LIS 112
           ++LF++M + N     +++ SIL      G VD  C  F++M     +  V+     ++ 
Sbjct: 355 IRLFNEMEESNIKPDSITFISILYACSHAGLVDLGCSYFSRMVNTYGIEPVIEHYGCMVD 414

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGAL 155
            + + G+ ++A     +M    + PN  +  +LL AC+  G L
Sbjct: 415 LYGRAGKLQQAYDFVCQM---PISPNDIVWRTLLGACSIHGNL 454



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 93/235 (39%), Gaps = 54/235 (22%)

Query: 88  SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE-PNSAILVSLL 146
           S+  A R+F  +    +  +  LI G + +  P  AL LF EM+   +  P+S     LL
Sbjct: 54  SLHYARRLFLDIRNPDVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLL 113

Query: 147 SACAQLGALDYGNWVYSYIQKKCIK----LDSILC--AALIDMYAKCGSIDLAMQVFHSY 200
            A A   AL  G      +Q  C+     LDS L     LI MYA+C  +  A +VF   
Sbjct: 114 KAAANCRALTNG------LQLHCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVF--- 164

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
                                            + I P+ +++ A+++AC     V+   
Sbjct: 165 --------------------------------DEMIEPNIVAWNAIVAACFRCEGVKDAE 192

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
             F  M     I+  L  +  M+    +AG L+ A      MP+K D+V W T++
Sbjct: 193 QVFRCM----PIR-NLTSWNIMLAGYTKAGELQLAREVFMKMPLK-DDVSWSTMI 241



 Score = 43.5 bits (101), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 77/179 (43%), Gaps = 8/179 (4%)

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC--GSIDLAMQVFHSY 200
           ++L S C  L  +     + + I K C+    ++   L+   A     S+  A ++F   
Sbjct: 9   LALFSKCKSLRTV---KQIQALIFKTCLNSYPLVSGKLLLHCAVTLPDSLHYARRLFLDI 65

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGIS-PDSISYIAVLSACSHLGWVEKG 259
            + DV  Y + I GL+ +     A +LF  M+ K ++ PDS S+  +L A ++   +  G
Sbjct: 66  RNPDVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCRALTNG 125

Query: 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
               H +   +G+   L     ++ +      L  A      M ++P+ V W  ++ AC
Sbjct: 126 L-QLHCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEM-IEPNIVAWNAIVAAC 182


>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
 gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 194/425 (45%), Positives = 293/425 (68%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           G ++ A +VF++M K   VSW  +I G+ + GR  +A+ LFREMQ   + P+   +VS+L
Sbjct: 63  GGIEFARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVL 122

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
           SAC  LGAL+ G WV SY++K+ ++ +  L  ALIDM+AKCG +D A  +F S  ++++ 
Sbjct: 123 SACTGLGALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIV 182

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
           ++TS I GLAM+G  +EA  +FE M   G++PD + +I +LSACSH G V+KG  YF SM
Sbjct: 183 SWTSVIGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGKRYFDSM 242

Query: 267 FDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEM 326
                I P+++HY CMVD+L RAGL++EA  F+  MP+ P+ V+W TL+ ACR H   ++
Sbjct: 243 RKDFSIVPKIEHYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINACRAHGELKL 302

Query: 327 GQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDG 386
           G++I   LI ++  H+  Y+LLSNIY +    E    +R+ M  + +K+ PG ++IELD 
Sbjct: 303 GEKITRQLIRNEPMHESNYVLLSNIYAKMSDWEKKTRIREAMDMKGMKKIPGSTMIELDN 362

Query: 387 VVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEK 446
            ++EF+AGD+SH +++EIY+  +E+ K++K  GY   T  V+ DI++E+KE  +  HSEK
Sbjct: 363 EIYEFVAGDKSHAQSKEIYEMVDEMGKEMKRAGYMPTTTEVLLDIDDEDKEDTLNRHSEK 422

Query: 447 LALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCS 506
           LA+AF L+ T PG++IRIVKN+R+C DCHSA K +SK++ R+I +RDR  +HHF++G CS
Sbjct: 423 LAIAFALLNTPPGTLIRIVKNLRVCDDCHSASKFISKIYNREIVVRDRNRFHHFKNGLCS 482

Query: 507 CLEYW 511
           C ++W
Sbjct: 483 CRDFW 487



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 111/240 (46%), Gaps = 48/240 (20%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVC----GRVRDARWVFDESDDLDVVSWNSMINGYVRNGE 57
           V+K  F  +V V+N+L+  Y  C    G +  AR VFDE    D VSW++MI GYVR G 
Sbjct: 36  VMKFGFGDEVNVQNTLVHMYCCCRGGEGGIEFARKVFDEMYKSDSVSWSAMIGGYVRVGR 95

Query: 58  ILEGLKLFDKMP---------------------------------------QRNDVSWNS 78
             + + LF +M                                        Q+N    N+
Sbjct: 96  SSDAINLFREMQIKGVCPDEITMVSVLSACTGLGALELGKWVESYVEKERVQKNVELSNA 155

Query: 79  ILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPN 138
           ++    + G VD A  +F  M +R++VSW  +I G A +GR  EA+A+F EM    + P+
Sbjct: 156 LIDMFAKCGDVDKATNLFRSMRERNIVSWTSVIGGLAMHGRGVEAVAVFEEMVRSGVTPD 215

Query: 139 SAILVSLLSACAQLGALDYGNWVYSYIQKK---CIKLDSILCAALIDMYAKCGSIDLAMQ 195
             + + LLSAC+  G +D G   +  ++K      K++   C  ++DM  + G +  A++
Sbjct: 216 DVVFIGLLSACSHSGLVDKGKRYFDSMRKDFSIVPKIEHYGC--MVDMLCRAGLVKEALK 273



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 96/190 (50%), Gaps = 8/190 (4%)

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC----GSIDL 192
           PN      +L ACA +G L+ G  V+  + K     +  +   L+ MY  C    G I+ 
Sbjct: 8   PNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGGIEF 67

Query: 193 AMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSH 252
           A +VF      D  ++++ I G    G S +A  LF  M+ KG+ PD I+ ++VLSAC+ 
Sbjct: 68  ARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSACTG 127

Query: 253 LGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVI-W 311
           LG +E G  +  S  +   ++  ++    ++D+  + G +++A N   S  M+  N++ W
Sbjct: 128 LGALELG-KWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRS--MRERNIVSW 184

Query: 312 GTLLGACRVH 321
            +++G   +H
Sbjct: 185 TSVIGGLAMH 194


>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 705

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 191/420 (45%), Positives = 292/420 (69%)

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           A +VF++ P +  V+W  +I G+A+ G    A+ LFREMQ   + P+   +VS+LSACA 
Sbjct: 286 AKKVFDESPVKDSVTWSAMIGGYARAGNSARAVTLFREMQVTGVCPDEITMVSVLSACAD 345

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSA 211
           LGAL+ G W+ SYI++K I     LC ALIDM+AKCG +D A++VF     + + ++TS 
Sbjct: 346 LGALELGKWLESYIERKNIMRSVELCNALIDMFAKCGDVDRAVKVFREMKVRTIVSWTSM 405

Query: 212 IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG 271
           I GLAM+G  +EA  +F+ M  +G+ PD +++I VLSACSH G V+KG YYF++M ++  
Sbjct: 406 IVGLAMHGRGLEAVLVFDEMMEQGVDPDDVAFIGVLSACSHSGLVDKGHYYFNTMENMFS 465

Query: 272 IKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIG 331
           I P+++HY CMVD+L RAG + EA  F+ +MP++P+ VIW +++ AC      ++G+ + 
Sbjct: 466 IVPKIEHYGCMVDMLSRAGRVNEALEFVRAMPVEPNQVIWRSIVTACHARGELKLGESVA 525

Query: 332 NMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEF 391
             LI  + +H+  Y+LLSNIY + L+ E   +VR+ M  + +++ PG ++IE++  ++EF
Sbjct: 526 KELIRREPSHESNYVLLSNIYAKLLRWEKKTKVREMMDVKGMRKIPGSTMIEMNNEIYEF 585

Query: 392 LAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAF 451
           +AGD+SH++ +EIY+  EE+ ++IK  GY   T  V+ DI+EE+KE  +  HSEKLA+AF
Sbjct: 586 VAGDKSHDQYKEIYEMVEEMGREIKRAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAF 645

Query: 452 GLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            L+ T PG+ IRIVKN+R+C DCHSA K +SKV+ R+I +RDR  +HHF++G CSC ++W
Sbjct: 646 ALLSTPPGTPIRIVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGLCSCGDFW 705



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 114/242 (47%), Gaps = 51/242 (21%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVC------GRVRDARWVFDESDDLDVVSWNSMINGYVRN 55
           +VK  F  D  V+N+L+  Y  C      G V  A+ VFDES   D V+W++MI GY R 
Sbjct: 253 MVKFGFEEDPHVRNTLVHMYCCCCQDGSSGPV-SAKKVFDESPVKDSVTWSAMIGGYARA 311

Query: 56  GEILEGLKLFDKMP----------------------------------QRNDVS-----W 76
           G     + LF +M                                   +R ++       
Sbjct: 312 GNSARAVTLFREMQVTGVCPDEITMVSVLSACADLGALELGKWLESYIERKNIMRSVELC 371

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136
           N+++    + G VD A +VF +M  R++VSW  +I G A +GR  EA+ +F EM    ++
Sbjct: 372 NALIDMFAKCGDVDRAVKVFREMKVRTIVSWTSMIVGLAMHGRGLEAVLVFDEMMEQGVD 431

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKK---CIKLDSILCAALIDMYAKCGSIDLA 193
           P+    + +LSAC+  G +D G++ ++ ++       K++   C  ++DM ++ G ++ A
Sbjct: 432 PDDVAFIGVLSACSHSGLVDKGHYYFNTMENMFSIVPKIEHYGC--MVDMLSRAGRVNEA 489

Query: 194 MQ 195
           ++
Sbjct: 490 LE 491



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 104/229 (45%), Gaps = 10/229 (4%)

Query: 100 PKRSLVSWVVLISGFAQNGRPK-EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
           P      +  LI  FAQ    K  AL  +  M+   + PN      +L ACA +  L+ G
Sbjct: 187 PSHDAFLFNTLIRAFAQTTHSKPHALRFYNTMRRHAVSPNKFTFPFVLKACAGMMRLELG 246

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKC------GSIDLAMQVFHSYGDKDVSAYTSAI 212
             V++ + K   + D  +   L+ MY  C      G +  A +VF     KD   +++ I
Sbjct: 247 GAVHASMVKFGFEEDPHVRNTLVHMYCCCCQDGSSGPVS-AKKVFDESPVKDSVTWSAMI 305

Query: 213 FGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGI 272
            G A  G+S  A  LF  M+  G+ PD I+ ++VLSAC+ LG +E G  +  S  +   I
Sbjct: 306 GGYARAGNSARAVTLFREMQVTGVCPDEITMVSVLSACADLGALELG-KWLESYIERKNI 364

Query: 273 KPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
              ++    ++D+  + G ++ A      M ++   V W +++    +H
Sbjct: 365 MRSVELCNALIDMFAKCGDVDRAVKVFREMKVR-TIVSWTSMIVGLAMH 412



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 76/158 (48%), Gaps = 16/158 (10%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQR--- 71
           N+LI  ++ CG V  A  VF E     +VSW SMI G   +G  LE + +FD+M ++   
Sbjct: 372 NALIDMFAKCGDVDRAVKVFREMKVRTIVSWTSMIVGLAMHGRGLEAVLVFDEMMEQGVD 431

Query: 72  -NDVSWNSILGGLVRFGSVDDACRVFNQM-------PKRSLVSWVVLISGFAQNGRPKEA 123
            +DV++  +L      G VD     FN M       PK  +  +  ++   ++ GR  EA
Sbjct: 432 PDDVAFIGVLSACSHSGLVDKGHYYFNTMENMFSIVPK--IEHYGCMVDMLSRAGRVNEA 489

Query: 124 LALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161
           L   R M    +EPN  I  S+++AC   G L  G  V
Sbjct: 490 LEFVRAMP---VEPNQVIWRSIVTACHARGELKLGESV 524


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 208/536 (38%), Positives = 319/536 (59%), Gaps = 39/536 (7%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQR--- 71
            +LI  Y  C  +  AR VFD      ++SW +MI  Y+    + EG++LF KM      
Sbjct: 266 TALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMF 325

Query: 72  -NDVSWNSI-----------LGGLV------------------------RFGSVDDACRV 95
            N+++  S+           LG L+                        + G V  A  V
Sbjct: 326 PNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSV 385

Query: 96  FNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGAL 155
           F+    + L+ W  +IS +AQN    EA  +F  M    + PN   +VSLL  CA+ G+L
Sbjct: 386 FDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSL 445

Query: 156 DYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGL 215
           + G W++SYI K+ IK D IL  + +DMYA CG ID A ++F    D+D+S + + I G 
Sbjct: 446 EMGKWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGF 505

Query: 216 AMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE 275
           AM+GH   A ELFE M++ G++P+ I++I  L ACSH G +++G   FH M    G  P+
Sbjct: 506 AMHGHGEAALELFEEMEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPK 565

Query: 276 LDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLI 335
           ++HY CMVDLLGRAGLL+EA   I SMPM+P+  ++G+ L AC++H+N ++G+      +
Sbjct: 566 VEHYGCMVDLLGRAGLLDEAHELIKSMPMRPNIAVFGSFLAACKLHKNIKLGEWAAKQFL 625

Query: 336 ESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGD 395
             + +  G  +L+SNIY    +  +   +R+ M+   I + PG S IE++G++HEF+ GD
Sbjct: 626 SLEPHKSGYNVLMSNIYASANRWGDVAYIRRAMKDEGIVKEPGVSSIEVNGLLHEFIMGD 685

Query: 396 RSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLIC 455
           R H   +++Y+  +E+ +K+++ GY  +   V+ +I++E+K + + YHSEKLA+A+GLI 
Sbjct: 686 REHPDAKKVYEMIDEMREKLEDAGYTPDVSCVLHNIDKEKKVSALNYHSEKLAMAYGLIS 745

Query: 456 TKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           T PG  IRIVKN+R+C DCH+A KL+SK++ R+I +RDR  +HHF++GSCSC +YW
Sbjct: 746 TAPGVPIRIVKNLRVCDDCHNATKLLSKIYGREIIVRDRNRFHHFKEGSCSCCDYW 801



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 106/365 (29%), Positives = 170/365 (46%), Gaps = 43/365 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VVKN F  DVFV N+LI  YS  G +  AR +FD+ ++ DVVSW++MI  Y R+G + E 
Sbjct: 150 VVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEA 209

Query: 62  LKLFDKM-------PQRNDVSWNSILGGL------------------------------- 83
           L L   M        +   +S   +L  L                               
Sbjct: 210 LDLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALI 269

Query: 84  ---VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
              V+  ++  A RVF+ + K S++SW  +I+ +       E + LF +M    + PN  
Sbjct: 270 DMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEI 329

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
            ++SL+  C   GAL+ G  ++++  +    L  +L  A IDMY KCG +  A  VF S+
Sbjct: 330 TMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSF 389

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
             KD+  +++ I   A N    EAF++F +M   GI P+  + +++L  C+  G +E G 
Sbjct: 390 KSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMG- 448

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
            + HS  D  GIK ++      VD+    G ++ A    A    + D  +W  ++    +
Sbjct: 449 KWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDR-DISMWNAMISGFAM 507

Query: 321 HRNAE 325
           H + E
Sbjct: 508 HGHGE 512



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 104/240 (43%), Gaps = 44/240 (18%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
            ++N F   + +  + I  Y  CG VR AR VFD     D++ W++MI+ Y +N  I E 
Sbjct: 354 TLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEA 413

Query: 62  LKLFDKMP-------QRNDVS---------------W-------NSILGGLV-------- 84
             +F  M        +R  VS               W         I G ++        
Sbjct: 414 FDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDM 473

Query: 85  --RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
               G +D A R+F +   R +  W  +ISGFA +G  + AL LF EM++L + PN    
Sbjct: 474 YANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITF 533

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKK---CIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
           +  L AC+  G L  G  ++  +  +     K++   C  ++D+  + G +D A ++  S
Sbjct: 534 IGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGC--MVDLLGRAGLLDEAHELIKS 591



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 77/150 (51%)

Query: 110 LISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC 169
           LI+ + +N  P +A  ++  M+  D E ++ ++ S+L AC  + +   G  V+ ++ K  
Sbjct: 95  LITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVKNG 154

Query: 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFE 229
              D  +C ALI MY++ GS+ LA  +F    +KDV ++++ I     +G   EA +L  
Sbjct: 155 FHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLR 214

Query: 230 NMKSKGISPDSISYIAVLSACSHLGWVEKG 259
           +M    + P  I  I++    + L  ++ G
Sbjct: 215 DMHVMRVKPSEIGMISITHVLAELADLKLG 244



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 16/168 (9%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           K     D+ +K S +  Y+ CG +  A  +F E+ D D+  WN+MI+G+  +G     L+
Sbjct: 457 KQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALE 516

Query: 64  LFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQM-------PKRSLVSWVVLIS 112
           LF++M       ND+++   L      G + +  R+F++M       PK      +V + 
Sbjct: 517 LFEEMEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLL 576

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNW 160
           G A  G   EA  L   ++S+ + PN A+  S L+AC     +  G W
Sbjct: 577 GRA--GLLDEAHEL---IKSMPMRPNIAVFGSFLAACKLHKNIKLGEW 619


>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 215/553 (38%), Positives = 340/553 (61%), Gaps = 43/553 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++N  + D F+   L++  S C  +  A  +F  + + +V  + ++I+G+V +G  LE 
Sbjct: 62  LIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEA 121

Query: 62  LKLFDKMPQRNDVSWNSILGG------------------------------LVRF----- 86
           ++L+ +M   + +  N ++                                LVR      
Sbjct: 122 IQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLRIMEL 181

Query: 87  ----GSVDDACRVFNQMPK----RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPN 138
               G + DA RVF +MP+    +  V W  +I GF +N     AL  FR MQ  ++ PN
Sbjct: 182 YGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPN 241

Query: 139 SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH 198
              +V +LSAC+QLGAL+ G WV+SY++K  I+L+  +  ALI+MY++CGSID A  VF 
Sbjct: 242 EFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFD 301

Query: 199 SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEK 258
              D+DV  Y + I GL+MNG S +A ELF  M  + + P +++++ VL+ACSH G V+ 
Sbjct: 302 EMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDF 361

Query: 259 GFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
           GF  FHSM   + ++P+++HY CMVDLLGR G LEEA + I +M M PD+++ GTLL AC
Sbjct: 362 GFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSAC 421

Query: 319 RVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPG 378
           ++H+N E+G+++   L +  Q   G Y+LLS++Y  + K + A +VR  M++  +++ PG
Sbjct: 422 KMHKNLELGEQVAKELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPG 481

Query: 379 CSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKET 438
           CS IE++  +HEFL GD  H + + IY+  EE+ + ++  GY+ E   V+ DIE+ EKE 
Sbjct: 482 CSSIEVNNEIHEFLLGDLRHPQKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEW 541

Query: 439 VIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYH 498
            +  HSE+LA+ +GLI T+P ++IR++KN+R+C DCHSA+KL++K+ +RKI +RDR  +H
Sbjct: 542 ALAMHSERLAICYGLISTEPCTMIRVMKNLRVCYDCHSAIKLIAKITRRKIVVRDRNRFH 601

Query: 499 HFEDGSCSCLEYW 511
           +FE+G+CSC +YW
Sbjct: 602 YFENGACSCGDYW 614


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/548 (39%), Positives = 325/548 (59%), Gaps = 40/548 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNG------ 56
           ++  F   V V  +L+  YS CG V  AR +FD      VVSWNSMI+GYV+NG      
Sbjct: 303 MRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAM 362

Query: 57  EILEGL--------------------------------KLFDKMPQRNDVS-WNSILGGL 83
           EI + +                                KL D++   +DVS  NS++   
Sbjct: 363 EIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMY 422

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
            +   VD A  +F  +  ++LVSW  +I G+AQNGR  EA+  F +MQ  +++P+S  +V
Sbjct: 423 SKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMV 482

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           S++ A A+L  L    W++  + + C+  +  +  AL+DMYAKCG++  A ++F    ++
Sbjct: 483 SVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDER 542

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
            V+ + + I G   +G    A ELFE MK + I P+ ++++ VLSACSH G VE+GF YF
Sbjct: 543 HVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYF 602

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
            SM   +G++P +DHY  MVDLLGRA  L EA +FI  MP++P   ++G +LGACR+H+N
Sbjct: 603 GSMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAMLGACRIHKN 662

Query: 324 AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE 383
            E+G++  N + + D +  G ++LL+NIY      +    VR TM K+ I++ PG S++E
Sbjct: 663 VELGEKAANRIFDLDPDDGGYHVLLANIYATASMWDKVARVRTTMEKKGIQKTPGWSVVE 722

Query: 384 LDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYH 443
           L   VH F +G  SH + ++IY F E +  +IK  GY  +T SV  D+E+  KE ++  H
Sbjct: 723 LQNEVHTFYSGTTSHPQAKKIYAFLETLGNRIKAAGYMPDTNSV-HDVEDVVKEQLLNSH 781

Query: 444 SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
           SEKLA+AF L+ T PG+ I + KN+R+C DCH+A K +S V KR+I +RD + +HHF+DG
Sbjct: 782 SEKLAIAFSLLNTSPGTTIHLRKNLRVCGDCHNATKYISLVTKREIIVRDMRRFHHFKDG 841

Query: 504 SCSCLEYW 511
           +CSC +YW
Sbjct: 842 TCSCGDYW 849



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 140/307 (45%), Gaps = 40/307 (13%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +++KN    +   +  L+  +   G + +A  VF   +D     +++M+ GY RN  + +
Sbjct: 99  LIIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDD 158

Query: 61  GLKLFDKMP---------------------------------------QRNDVSWNSILG 81
            +  F +M                                          N  +   ++ 
Sbjct: 159 AVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVN 218

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              +   V++A ++F++MP+R LV W  +ISG+AQNG  K AL L   MQ     P+S  
Sbjct: 219 MYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSIT 278

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           +VS+L A A +G+L  G  ++ Y  +   +    +  AL+DMY+KCGS+  A  +F    
Sbjct: 279 IVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMT 338

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
            K V ++ S I G   NG    A E+F+ M  + +   +++ +  L AC+ LG VE+G  
Sbjct: 339 GKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQG-R 397

Query: 262 YFHSMFD 268
           + H + D
Sbjct: 398 FVHKLLD 404



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 105/231 (45%), Gaps = 2/231 (0%)

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
           +FGS+ +A RVF  +  +    +  ++ G+A+N    +A++ F  M+   + P       
Sbjct: 121 KFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTY 180

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           LL  C     L  G  ++  +       +      +++MYAKC  ++ A ++F    ++D
Sbjct: 181 LLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERD 240

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           +  + + I G A NG    A EL   M+ +G  PDSI+ +++L A + +G +  G    H
Sbjct: 241 LVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIG-RSIH 299

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
                 G +  ++    +VD+  + G +  A      M  K   V W +++
Sbjct: 300 GYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGK-TVVSWNSMI 349



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 80/158 (50%), Gaps = 12/158 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V++     +VFV  +L+  Y+ CG V  AR +FD  D+  V +WN+MI+GY  +G    
Sbjct: 503 LVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGTHGLGKA 562

Query: 61  GLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPK-----RSLVSWVVLI 111
            L+LF+KM +     N+V++  +L      G V++  + F  M K      ++  +  ++
Sbjct: 563 ALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYGLEPAMDHYGAMV 622

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
               +  R  EA      +Q + +EP  ++  ++L AC
Sbjct: 623 DLLGRANRLNEAWDF---IQKMPIEPAISVFGAMLGAC 657



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 76/177 (42%), Gaps = 8/177 (4%)

Query: 139 SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH 198
           SAIL+ L ++  +L      +     I K  +  + +    L+ ++ K GS+  A +VF 
Sbjct: 80  SAILLELCTSMKEL------HQFIPLIIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQ 133

Query: 199 SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEK 258
              DK    Y + + G A N    +A   F  M+  G+ P   ++  +L  C     + K
Sbjct: 134 PIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRK 193

Query: 259 GFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
           G    H    V+G    +     +V++  +  L+EEA      MP + D V W T++
Sbjct: 194 G-KEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPER-DLVCWNTII 248


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 225/543 (41%), Positives = 327/543 (60%), Gaps = 41/543 (7%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DV    +LI+ Y+  G + +A+ +FDE    DVVSWN+MI+GY   G   E L+LF  M 
Sbjct: 199 DVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMM 258

Query: 70  QRN---DVS-----------------------W-------------NSILGGLVRFGSVD 90
           + N   D S                       W             N+++    + G ++
Sbjct: 259 KTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELE 318

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
            AC +F ++P + ++SW  LI G+      KEAL LF+EM      PN   ++S+L ACA
Sbjct: 319 TACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACA 378

Query: 151 QLGALDYGNWVYSYIQK--KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAY 208
            LGA+D G W++ YI K  K +   S L  +LIDMYAKCG I+ A QVF+S   K +S++
Sbjct: 379 HLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSW 438

Query: 209 TSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD 268
            + IFG AM+G +  +F+LF  M+  GI PD I+++ +LSACSH G ++ G + F +M  
Sbjct: 439 NAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQ 498

Query: 269 VHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQ 328
            + + P+L+HY CM+DLLG +GL +EAE  I  M M+PD VIW +LL AC++H N E+G+
Sbjct: 499 DYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGE 558

Query: 329 RIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVV 388
                LI+ +  + G Y+LLSNIY    +     + R  +  + +K+ PGCS IE+D VV
Sbjct: 559 SFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVV 618

Query: 389 HEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLA 448
           HEF+ GD+ H + +EIY   EE+   ++  G+  +T  V+ ++EEE KE  + +HSEKLA
Sbjct: 619 HEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLA 678

Query: 449 LAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCL 508
           +AFGLI TKPG+ + IVKN+R+C +CH A KL+SK++KR+I  RDR  +HHF DG CSC 
Sbjct: 679 IAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCN 738

Query: 509 EYW 511
           +YW
Sbjct: 739 DYW 741



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 89/289 (30%), Positives = 164/289 (56%), Gaps = 4/289 (1%)

Query: 39  DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQ 98
           DLD+    S+I+ YV+NG + +  K+FDK P R+ VS+ +++ G    G +++A ++F++
Sbjct: 166 DLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDE 225

Query: 99  MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
           +P + +VSW  +ISG+A+ G  KEAL LF++M   ++ P+ + +V+++SACAQ G+++ G
Sbjct: 226 IPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELG 285

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
             V+ +I       +  +  ALID+Y+KCG ++ A  +F     KDV ++ + I G    
Sbjct: 286 RQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHM 345

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD--VHGIKPEL 276
               EA  LF+ M   G +P+ ++ +++L AC+HLG ++ G  + H   D  + G+    
Sbjct: 346 NLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIG-RWIHVYIDKRLKGVTNAS 404

Query: 277 DHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAE 325
                ++D+  + G +E A     S+  K  +  W  ++    +H  A+
Sbjct: 405 SLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSS-WNAMIFGFAMHGRAD 452



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 115/263 (43%), Gaps = 33/263 (12%)

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
           F  +  A  VF  + + +L+ W  +  G A +  P  AL L+  M SL L PNS     +
Sbjct: 81  FEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFV 140

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
           L +CA+  A   G  ++ ++ K    LD  +  +LI MY + G ++ A +VF     +DV
Sbjct: 141 LKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDV 200

Query: 206 SAYT-------------------------------SAIFGLAMNGHSIEAFELFENMKSK 234
            +YT                               + I G A  G+  EA ELF++M   
Sbjct: 201 VSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKT 260

Query: 235 GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEE 294
            + PD  + + V+SAC+  G +E G    H   D HG    L     ++DL  + G LE 
Sbjct: 261 NVRPDESTMVTVVSACAQSGSIELG-RQVHLWIDDHGFGSNLKIVNALIDLYSKCGELET 319

Query: 295 AENFIASMPMKPDNVIWGTLLGA 317
           A      +P K D + W TL+G 
Sbjct: 320 ACGLFERLPYK-DVISWNTLIGG 341


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 210/497 (42%), Positives = 318/497 (63%), Gaps = 7/497 (1%)

Query: 22  SVCGRVRDARW-------VFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDV 74
           S CGR  +  +       + + +  +D    ++++  Y   G +   L LF+KM  +N V
Sbjct: 231 SACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLV 290

Query: 75  SWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD 134
           +  +++ G  + G +++A  VFNQM K+ LV W  +ISG+A++  P+EAL LF EMQSL 
Sbjct: 291 ASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLG 350

Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
           ++P+   ++S+++ACA LGALD   W++ ++ K        +  ALI+MYAKCGS++ A 
Sbjct: 351 IKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERAR 410

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
           ++F     K+V ++T  I   AM+G +  A   F  M+ + I P+ I+++ VL ACSH G
Sbjct: 411 RIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDENIEPNGITFVGVLYACSHAG 470

Query: 255 WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTL 314
            VE+G   F+SM + H I P+  HY CMVDL GRA LL EA   + +MP+ P+ +IWG+L
Sbjct: 471 LVEEGRKIFYSMINEHNITPKHVHYGCMVDLFGRANLLREALELVEAMPLAPNVIIWGSL 530

Query: 315 LGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIK 374
           + ACRVH   E+G+     L+E D +HDG ++ LSNIY +  + E+  +VRK M+ + I 
Sbjct: 531 MAACRVHGEIELGEFAAKRLLELDPDHDGAHVFLSNIYAKARRWEDVGQVRKLMKHKGIS 590

Query: 375 RAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEE 434
           +  GCS  EL+  +HEFL  DRSH+   EIY+   E+V K+K  GY+  T S++ D+EEE
Sbjct: 591 KERGCSRFELNNEIHEFLVADRSHKHADEIYEKLYEVVSKLKLVGYSPNTCSILVDLEEE 650

Query: 435 EKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDR 494
           EK+ V+ +HSEKLAL +GL+    GS IRI+KN+R+C DCH+ +KL SKV++R+I +RDR
Sbjct: 651 EKKEVVLWHSEKLALCYGLMRDGTGSCIRIIKNLRVCEDCHTFIKLASKVYEREIVVRDR 710

Query: 495 KHYHHFEDGSCSCLEYW 511
             +HH++DG CSC +YW
Sbjct: 711 TRFHHYKDGVCSCKDYW 727



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 103/363 (28%), Positives = 177/363 (48%), Gaps = 41/363 (11%)

Query: 40  LDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRF----GSVDDACRV 95
           +D  S+  ++    R   ++EGL++     +    S   +  GLVR     G + +A  +
Sbjct: 120 VDRFSFPPLLKALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLM 179

Query: 96  FNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGAL 155
           F++M  R +V+W ++I G+ Q+G   +AL LF EM++ ++EP+  +L ++LSAC + G L
Sbjct: 180 FDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNL 239

Query: 156 DYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGL 215
            YG  ++ +I +  I +D  L +AL+ MYA CGS+DLA+ +F     K++ A T+ + G 
Sbjct: 240 SYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGY 299

Query: 216 AM-----NGHSI--------------------------EAFELFENMKSKGISPDSISYI 244
           +      N  S+                          EA  LF  M+S GI PD ++ +
Sbjct: 300 SKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTML 359

Query: 245 AVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPM 304
           +V++AC+HLG +++   + H   D +G    L     ++++  + G LE A      MP 
Sbjct: 360 SVITACAHLGALDQA-KWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPR 418

Query: 305 KPDNVI-WGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEE 363
           K  NVI W  ++ A  +H +A    R  + +   D+N +   I    +          EE
Sbjct: 419 K--NVISWTCMISAFAMHGDAGSALRFFHQM--EDENIEPNGITFVGVLYACSHAGLVEE 474

Query: 364 VRK 366
            RK
Sbjct: 475 GRK 477



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 99/228 (43%), Gaps = 3/228 (1%)

Query: 88  SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLS 147
           S+D A  VFN +PK         +   +++  P++ L ++  M++  L  +      LL 
Sbjct: 71  SLDYALSVFNLIPKPETHLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLK 130

Query: 148 ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSA 207
           A +++ +L  G  ++    K     D  +   L+ MYA CG I  A  +F     +DV  
Sbjct: 131 ALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVT 190

Query: 208 YTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMF 267
           ++  I G   +G   +A  LFE MK+  + PD +    VLSAC   G +  G    H   
Sbjct: 191 WSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYG-KMIHDFI 249

Query: 268 DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
             + I  +    + +V +    G ++ A N      M P N++  T +
Sbjct: 250 MENNIVVDPHLQSALVTMYASCGSMDLALNLFEK--MTPKNLVASTAM 295



 Score = 40.0 bits (92), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 49/238 (20%), Positives = 98/238 (41%), Gaps = 52/238 (21%)

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLD---SILCAALIDMYAKCGSIDLAMQVFHSY 200
           +L SA +   +L +   V++ I +   KLD   S+L   +I   A   S+D A+ VF+  
Sbjct: 25  TLFSALSSATSLTHLKQVHAQILRS--KLDRSTSLLVKLVISSCALSSSLDYALSVFNLI 82

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
              +       +  L+ +    +   ++E M+++G++ D  S+  +L A S +  + +G 
Sbjct: 83  PKPETHLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGL 142

Query: 261 YYFHSMFDVHGIKPELD--------------HYAC-----------------------MV 283
                  ++HG+  +L               + AC                       M+
Sbjct: 143 -------EIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMI 195

Query: 284 DLLGRAGLLEEAENFIASMP---MKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338
           D   ++GL  +A      M    ++PD ++  T+L AC    N   G+ I + ++E++
Sbjct: 196 DGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENN 253


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 215/550 (39%), Positives = 319/550 (58%), Gaps = 39/550 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +VVK  F +DV    SL+  YS  GR+ DA  +FDE  D  VV+W ++ +GY  +G   E
Sbjct: 136 LVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHRE 195

Query: 61  GLKLFDKMP---------------------------------------QRNDVSWNSILG 81
            + LF KM                                        Q+N     +++ 
Sbjct: 196 AIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVN 255

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G ++ A  VF+ M ++ +V+W  +I G+A N  PKE + LF +M   +L+P+   
Sbjct: 256 LYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFS 315

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           +V  LS+CA LGALD G W  S I +     +  +  ALIDMYAKCG++    +VF    
Sbjct: 316 IVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMK 375

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
           +KD+    +AI GLA NGH   +F +F   +  GISPD  +++ +L  C H G ++ G  
Sbjct: 376 EKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLR 435

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           +F+++  V+ +K  ++HY CMVDL GRAG+L++A   I  MPM+P+ ++WG LL  CR+ 
Sbjct: 436 FFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLV 495

Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
           ++ ++ + +   LI  +  + G Y+ LSNIY    + + A EVR  M K+ +K+ PG S 
Sbjct: 496 KDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSW 555

Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIG 441
           IEL+G VHEFLA D+SH  + +IY   E++  +++  G+   T  V FD+EEEEKE V+G
Sbjct: 556 IELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKERVLG 615

Query: 442 YHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
           YHSEKLA+A GLI T  G VIR+VKN+R+C DCH  MKL+SK+ +R+I +RD   +H F 
Sbjct: 616 YHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFT 675

Query: 502 DGSCSCLEYW 511
           +GSCSC +YW
Sbjct: 676 NGSCSCNDYW 685



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 99/206 (48%), Gaps = 2/206 (0%)

Query: 110 LISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC 169
           LI+GF  N    E L LF  ++   L  +      +L AC +  +   G  ++S + K  
Sbjct: 82  LINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCG 141

Query: 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFE 229
              D     +L+ +Y+  G ++ A ++F    D+ V  +T+   G   +G   EA +LF+
Sbjct: 142 FNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFK 201

Query: 230 NMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRA 289
            M   G+ PDS   + VLSAC H+G ++ G +    M ++   K        +V+L  + 
Sbjct: 202 KMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVR-TTLVNLYAKC 260

Query: 290 GLLEEAENFIASMPMKPDNVIWGTLL 315
           G +E+A +   SM ++ D V W T++
Sbjct: 261 GKMEKARSVFDSM-VEKDIVTWSTMI 285


>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
 gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 220/567 (38%), Positives = 328/567 (57%), Gaps = 57/567 (10%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++N    D FV   L++  S    +  A  +F  + + +V  + ++I+G V +    +G
Sbjct: 55  IIRNHHHQDPFVVFELLRVCSNLNSIGYASKIFSHTQNPNVYLYTALIDGLVLSCYYTDG 114

Query: 62  LKLFDKMPQRNDV-----------------------------------SWNSILGGLVRF 86
           + L+ +M   + V                                   S  SI   L+  
Sbjct: 115 IHLYYQMINSSLVPDSYAVTSVLKACGCHLALKEGREVHSQVLKLGLSSNRSIRIKLIEL 174

Query: 87  ----GSVDDACRVFNQMPKRSLVS------------------WVVLISGFAQNGRPKEAL 124
               G+ +DA RVF++MP+R +V+                  W  +I G  +NG    AL
Sbjct: 175 YGKCGAFEDARRVFDEMPERDVVASTVMINYYFDHGIKDTVCWTAMIDGLVRNGESNRAL 234

Query: 125 ALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMY 184
            +FR MQ  D+ PN   +V +LSAC++LGAL  G WV SY+ K  I+L+  +  ALI+MY
Sbjct: 235 EVFRNMQREDVMPNEVTIVCVLSACSELGALQLGRWVRSYMDKHRIELNHFVGGALINMY 294

Query: 185 AKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYI 244
           ++CG ID A +VF    +K+V  Y S I G A++G S+EA ELF  +  +G +P S++++
Sbjct: 295 SRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPSSVTFV 354

Query: 245 AVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPM 304
            VL+ACSH G  E GF  FHSM   +GI+P+++HY CMVDLLGR G LEEA +FI  M +
Sbjct: 355 GVLNACSHGGLAELGFEIFHSMAKDYGIEPQIEHYGCMVDLLGRLGRLEEAYSFIRMMKV 414

Query: 305 KPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEV 364
            PD+V+ G LL AC++H N E+ +R+   L+       G YILLSN Y  + K + A EV
Sbjct: 415 APDHVMLGALLSACKIHGNLELAERVAKSLVACKNADSGTYILLSNAYSSSGKWKEAAEV 474

Query: 365 RKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVET 424
           R  MR+  I++ PGCS IE++  +HEFL GD  H + ++IY+  EE+ + ++  GY   T
Sbjct: 475 RTNMREEGIEKEPGCSSIEVNNEIHEFLLGDLRHPQKEKIYKKLEELNQILRLEGYTPAT 534

Query: 425 RSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKV 484
             V+ DIE+ EKE  +  HSE+LA+ +GLI TKP + +R+VKN+R+C+DCH  +KL+S +
Sbjct: 535 EVVLHDIEKSEKEWALAIHSERLAICYGLISTKPLTTLRVVKNLRVCNDCHLTIKLISNI 594

Query: 485 FKRKISIRDRKHYHHFEDGSCSCLEYW 511
            +RKI +RDR  +HHFE+G CSC +YW
Sbjct: 595 TRRKIVVRDRNRFHHFENGVCSCGDYW 621



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 76/175 (43%), Gaps = 8/175 (4%)

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
            +SLL  C     +     +Y+ I +     D  +   L+ + +   SI  A ++F    
Sbjct: 35  FISLLQNCKHNNQIP---PIYAKIIRNHHHQDPFVVFELLRVCSNLNSIGYASKIFSHTQ 91

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS-HLGWVEKGF 260
           + +V  YT+ I GL ++ +  +   L+  M +  + PDS +  +VL AC  HL   E   
Sbjct: 92  NPNVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPDSYAVTSVLKACGCHLALKEG-- 149

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
              HS     G+         +++L G+ G  E+A      MP +  +V+  T++
Sbjct: 150 REVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPER--DVVASTVM 202


>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 600

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/525 (41%), Positives = 322/525 (61%), Gaps = 31/525 (5%)

Query: 8   AYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDK 67
           +YD F+ N+LI+ YS     +   ++F  +     V+ N     +V  G    G     K
Sbjct: 86  SYDAFLFNTLIRAYSQTRDSKSNSFLFYRTMLRYGVTPNKFTFPFVLKGCAGIGSLRLGK 145

Query: 68  MPQRNDVSWNSILGGLVRFGSVDD---------------------ACRVFNQMPKRSLVS 106
                      + G +V+FG  +D                     A +VF+  PK   V+
Sbjct: 146 ----------CVHGCVVKFGFEEDVHVLNTLIHMYCCLGEDGFEFAEKVFDDSPKMDTVT 195

Query: 107 WVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQ 166
           W  +I+GF + G    A+ LFREMQ + + P+   +VS+LSACA LGAL+ G WV SY++
Sbjct: 196 WSAMIAGFVRLGCSSRAVDLFREMQVMGVCPDEITMVSVLSACADLGALELGKWVESYVE 255

Query: 167 KKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFE 226
           KK I     LC ALIDM+AKCG++D A+++F     + + ++TS I GLAM+G  ++A  
Sbjct: 256 KKNIPKSVELCNALIDMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGLAMHGRGLDAVS 315

Query: 227 LFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLL 286
           LF+ M   GI+PD +++I VLSACSH G V+KG YYF SM     I P+++HY CMVDLL
Sbjct: 316 LFDEMVENGITPDDVAFIGVLSACSHSGLVDKGRYYFGSMERNFSIVPKVEHYGCMVDLL 375

Query: 287 GRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYI 346
            R G ++EA  F+  MP +P+ +IW T++ AC      ++G+ I   LI+S+  H+  Y+
Sbjct: 376 CRGGFVKEAFEFVQKMPFEPNQIIWRTIITACHATGELKLGESISKELIKSEPMHESNYV 435

Query: 347 LLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQ 406
           LLSNIY +  + E   +VR+ M  R +K+ PG ++IE++  ++EF+AGD+SH++ +EIY+
Sbjct: 436 LLSNIYAKLRQWEKKTKVREMMDMRGMKKVPGSTMIEVNNEMYEFVAGDKSHDQYKEIYE 495

Query: 407 FWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVK 466
             +E+ ++IK  GY   T  V+ DI+EE+KE  +  HSEKLA+AF L+ T PG+ IRIVK
Sbjct: 496 MVDEMGREIKKAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAFALLNTPPGTSIRIVK 555

Query: 467 NIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           N+R+C DCHSA K +SKV+ R+I +RDR  +HHF++G CSC ++W
Sbjct: 556 NLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGLCSCRDFW 600



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 126/300 (42%), Gaps = 76/300 (25%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGR--VRDARWVFDESDDLDVVSWNSMINGYVRNGEIL 59
           VVK  F  DV V N+LI  Y   G      A  VFD+S  +D V+W++MI G+VR G   
Sbjct: 151 VVKFGFEEDVHVLNTLIHMYCCLGEDGFEFAEKVFDDSPKMDTVTWSAMIAGFVRLGCSS 210

Query: 60  EGLKLFDKM----------------------------------------PQRNDVSWNSI 79
             + LF +M                                        P+  ++  N++
Sbjct: 211 RAVDLFREMQVMGVCPDEITMVSVLSACADLGALELGKWVESYVEKKNIPKSVELC-NAL 269

Query: 80  LGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS 139
           +    + G+VD A ++F QM  R++VSW  +I+G A +GR  +A++LF EM    + P+ 
Sbjct: 270 IDMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGLAMHGRGLDAVSLFDEMVENGITPDD 329

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
              + +LSAC+  G +D G + +  +++                     +  +  +V H 
Sbjct: 330 VAFIGVLSACSHSGLVDKGRYYFGSMER---------------------NFSIVPKVEH- 367

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
                   Y   +  L   G   EAFE  + M      P+ I +  +++AC   G ++ G
Sbjct: 368 --------YGCMVDLLCRGGFVKEAFEFVQKMP---FEPNQIIWRTIITACHATGELKLG 416


>gi|222619165|gb|EEE55297.1| hypothetical protein OsJ_03249 [Oryza sativa Japonica Group]
          Length = 706

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 198/438 (45%), Positives = 284/438 (64%)

Query: 74  VSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL 133
           V   +++G L   G  D A  +F+ MP+R  V+W  +I+G+   GR +EAL LF EM+  
Sbjct: 269 VCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHA 328

Query: 134 DLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLA 193
                   LVS L+ACAQLGAL+ G WV+S    + ++L   L  ALIDMY+KCG++  A
Sbjct: 329 GAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAA 388

Query: 194 MQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL 253
           M+VF S G+++V  +TSA+ GLAMNG   +   LF+ M+S G+ P+ ++++ VL  CS  
Sbjct: 389 MEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMA 448

Query: 254 GWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGT 313
           G V++G   F SM   HGI P L+HY CMVDL GRAG L++A NFI  MP++P   +WG 
Sbjct: 449 GLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGA 508

Query: 314 LLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKI 373
           LL A R+H+N E+G+   + L+  +  +D  ++LLSNIY ++   +    VR  M+ + +
Sbjct: 509 LLNASRIHKNVELGKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGV 568

Query: 374 KRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEE 433
           K+ PGCS IE+ G VHEF  G ++H + +EI     E+ ++++  GY   T+ V+FDIEE
Sbjct: 569 KKVPGCSAIEVGGKVHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEVLFDIEE 628

Query: 434 EEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRD 493
           E+KE  I  HSEKLA+AFGL+       IRIVKN+R+C DCH   K++SKVF R+I +RD
Sbjct: 629 EDKEDAISLHSEKLAIAFGLVALPEDMEIRIVKNLRVCEDCHDYTKMISKVFNREIVMRD 688

Query: 494 RKHYHHFEDGSCSCLEYW 511
           R  +HHF+DG+CSC +YW
Sbjct: 689 RNRFHHFKDGACSCKDYW 706


>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
 gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
          Length = 578

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 204/436 (46%), Positives = 288/436 (66%), Gaps = 2/436 (0%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136
            ++L    + G +D A +VF++M KR + SW  LISGFAQ  +P EAL+LF+ M+    +
Sbjct: 144 TTLLDVYAKVGEIDSAEKVFDEMVKRDIASWNALISGFAQGSKPTEALSLFKRMEIDGFK 203

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
           PN   ++  LSACAQLG    G  ++ YI+ +   +++ +C  +IDMYAKCG +D A  V
Sbjct: 204 PNEISVLGALSACAQLGDFKEGEKIHGYIKVERFDMNAQVCNVVIDMYAKCGFVDKAYLV 263

Query: 197 FHSYG-DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGW 255
           F S    KD+  + + I   AM+G   +A ELFE M   G+SPD +SY+AVL AC+H G 
Sbjct: 264 FESMSCRKDIVTWNTMIMAFAMHGEGCKALELFEKMDQSGVSPDDVSYLAVLCACNHGGL 323

Query: 256 VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
           VE+GF  F+SM +  G+KP + HY  +VDLLGRAG L EA + + SMP  PD V+W TLL
Sbjct: 324 VEEGFRLFNSMENC-GVKPNVKHYGSVVDLLGRAGRLHEAYDIVNSMPTVPDIVLWQTLL 382

Query: 316 GACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKR 375
           GA R HRN E+ + +   L+E   NH G ++LLSN+Y    +  +   VR+ M+ R +K+
Sbjct: 383 GASRTHRNVEIAETVSRKLVEMGSNHCGDFVLLSNVYAARERWADVGRVREAMKNRDVKK 442

Query: 376 APGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEE 435
            PG S IE +GV+H+F   D+SHE  +EIY   +EI  ++K YGY  ET  V+ DI EE+
Sbjct: 443 VPGLSYIEGNGVIHKFYNADKSHESWREIYAKLDEIRFRVKEYGYVAETSFVLHDIGEED 502

Query: 436 KETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRK 495
           KE V+G+HSEKLA+AFGLI T  G+ I+++KN+RIC DCH  +KL+SK++ R+I +RDR 
Sbjct: 503 KENVLGHHSEKLAVAFGLISTSEGTPIQVIKNLRICGDCHFVIKLISKIYDREIIVRDRV 562

Query: 496 HYHHFEDGSCSCLEYW 511
            +H F++G CSC +YW
Sbjct: 563 RFHRFKEGFCSCRDYW 578



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 116/236 (49%), Gaps = 1/236 (0%)

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
            G++  A   F+Q+   S   W  +I GF Q+  P  A A ++ M S   + ++     +
Sbjct: 52  LGNLSFAILTFSQIRTPSTNDWNAIIRGFIQSPNPTNAFAWYKSMISKSRKVDALTCSFV 111

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
           L ACA++ A      ++++I +K    D++L   L+D+YAK G ID A +VF     +D+
Sbjct: 112 LKACARVLARLESIQIHTHIVRKGFIADALLGTTLLDVYAKVGEIDSAEKVFDEMVKRDI 171

Query: 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHS 265
           +++ + I G A      EA  LF+ M+  G  P+ IS +  LSAC+ LG  ++G    H 
Sbjct: 172 ASWNALISGFAQGSKPTEALSLFKRMEIDGFKPNEISVLGALSACAQLGDFKEG-EKIHG 230

Query: 266 MFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
              V            ++D+  + G +++A     SM  + D V W T++ A  +H
Sbjct: 231 YIKVERFDMNAQVCNVVIDMYAKCGFVDKAYLVFESMSCRKDIVTWNTMIMAFAMH 286



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 105/238 (44%), Gaps = 40/238 (16%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +V+  F  D  +  +L+  Y+  G +  A  VFDE    D+ SWN++I+G+ +  +  E 
Sbjct: 131 IVRKGFIADALLGTTLLDVYAKVGEIDSAEKVFDEMVKRDIASWNALISGFAQGSKPTEA 190

Query: 62  LKLFDKMP----QRNDVS-----------------------------------WNSILGG 82
           L LF +M     + N++S                                    N ++  
Sbjct: 191 LSLFKRMEIDGFKPNEISVLGALSACAQLGDFKEGEKIHGYIKVERFDMNAQVCNVVIDM 250

Query: 83  LVRFGSVDDACRVFNQMP-KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
             + G VD A  VF  M  ++ +V+W  +I  FA +G   +AL LF +M    + P+   
Sbjct: 251 YAKCGFVDKAYLVFESMSCRKDIVTWNTMIMAFAMHGEGCKALELFEKMDQSGVSPDDVS 310

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
            +++L AC   G ++ G  +++ ++   +K +     +++D+  + G +  A  + +S
Sbjct: 311 YLAVLCACNHGGLVEEGFRLFNSMENCGVKPNVKHYGSVVDLLGRAGRLHEAYDIVNS 368


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 208/533 (39%), Positives = 316/533 (59%), Gaps = 31/533 (5%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D    N++I  Y+  G +  AR +FDES   DV +W +M++GYV+NG + E    FD+MP
Sbjct: 234 DAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMP 293

Query: 70  QRNDVS-------------------------------WNSILGGLVRFGSVDDACRVFNQ 98
           ++N+VS                               WN+++ G  + G +  A + F+ 
Sbjct: 294 EKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDM 353

Query: 99  MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
           MP+R  VSW  +I+G+AQ+G  +EAL +F E++      N A     LS CA + AL+ G
Sbjct: 354 MPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELG 413

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
             ++    K        +  AL+ MY KCGSID A   F    +KDV ++ + + G A +
Sbjct: 414 KQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARH 473

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDH 278
           G   +A  +FE+MK+ G+ PD I+ + VLSACSH G +++G  YF+SM   +G+ P   H
Sbjct: 474 GFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKH 533

Query: 279 YACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338
           Y CM+DLLGRAG LEEA++ I +MP +P    WG LLGA R+H N E+G++   M+ + +
Sbjct: 534 YTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKME 593

Query: 339 QNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSH 398
             + G Y+LLSN+Y  + +  +A+++R  MR   +++ PG S +E+   +H F  GD SH
Sbjct: 594 PQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSH 653

Query: 399 EKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKP 458
            + + IY + EE+  K++  GY   T+ V+ D+EEEEKE ++ YHSEKLA+AFG++    
Sbjct: 654 PEKERIYAYLEELDLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPG 713

Query: 459 GSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           G  IR++KN+R+C DCHSA+K +SK+  R I +RD   +HHF +G CSC +YW
Sbjct: 714 GRPIRVMKNLRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 148/305 (48%), Gaps = 22/305 (7%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDV 74
           N++I  Y    +   AR +FD+  + D+ SWN M+ GYVRN  + +  +LFD MP+++ V
Sbjct: 84  NAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVV 143

Query: 75  SWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD 134
           SWNS+L G  + G VD+A  VF+ MP+++ +SW  L++ +  NGR +EA  LF      D
Sbjct: 144 SWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWD 203

Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
           L   +     L+    +   L    W++  +  +    D+I    +I  YA+ G +  A 
Sbjct: 204 LISWNC----LMGGFVRKKKLGDARWLFDKMPVR----DAISWNTMISGYAQGGGLSQAR 255

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
           ++F     +DV  +T+ + G   NG   EA   F+ M  K    + +SY A+++      
Sbjct: 256 RLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEK----NEVSYNAMIAGYVQTK 311

Query: 255 WVEKGFYYFHSMFDVHGIKP--ELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWG 312
            ++     F SM       P   +  +  M+   G+ G + +A  F   MP + D V W 
Sbjct: 312 KMDIARELFESM-------PCRNISSWNTMITGYGQIGDIAQARKFFDMMPQR-DCVSWA 363

Query: 313 TLLGA 317
            ++  
Sbjct: 364 AIIAG 368



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/376 (26%), Positives = 166/376 (44%), Gaps = 76/376 (20%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D+F  N ++  Y    R+ DAR +FD   + DVVSWNS+++GY +NG + E  ++FD MP
Sbjct: 110 DLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMP 169

Query: 70  QRNDVSWNSILGGLVRFGSVDDACR-------------------------------VFNQ 98
           ++N +SWN +L   V  G +++AC                                +F++
Sbjct: 170 EKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDK 229

Query: 99  MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALD-- 156
           MP R  +SW  +ISG+AQ G   +A  LF E  + D+   +A    ++S   Q G LD  
Sbjct: 230 MPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTA----MVSGYVQNGMLDEA 285

Query: 157 --------------YGNWVYSYIQKKCIKL-----DSILCA------ALIDMYAKCGSID 191
                         Y   +  Y+Q K + +     +S+ C        +I  Y + G I 
Sbjct: 286 KTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIA 345

Query: 192 LAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS 251
            A + F     +D  ++ + I G A +GH  EA  +F  +K  G S +  ++   LS C+
Sbjct: 346 QARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCA 405

Query: 252 HLGWVEKGFYYFHSMFDVHGIKPELDH-YACMVD-----LLGRAGLLEEAENFIASMPMK 305
            +  +E G         +HG   ++ +   C V      +  + G ++EA +    +  K
Sbjct: 406 DIAALELG-------KQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEK 458

Query: 306 PDNVIWGTLLGACRVH 321
            D V W T+L     H
Sbjct: 459 -DVVSWNTMLAGYARH 473



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/269 (30%), Positives = 136/269 (50%), Gaps = 21/269 (7%)

Query: 39  DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQ 98
           D D++ WN  I+ ++RNG     L +F+ MP+R+ VS+N+++ G +R    + A  +F+Q
Sbjct: 46  DPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQ 105

Query: 99  MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV--SLLSACAQLGALD 156
           MP+R L SW V+++G+ +N R  +A  LF      DL P   ++   SLLS  AQ G +D
Sbjct: 106 MPERDLFSWNVMLTGYVRNCRLGDARRLF------DLMPEKDVVSWNSLLSGYAQNGYVD 159

Query: 157 YGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLA 216
               V+  + +K    +SI    L+  Y   G I+ A  +F S  D D+ ++   + G  
Sbjct: 160 EAREVFDNMPEK----NSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFV 215

Query: 217 MNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPEL 276
                 +A  LF+ M  +    D+IS+  ++S  +  G    G      +FD    + ++
Sbjct: 216 RKKKLGDARWLFDKMPVR----DAISWNTMISGYAQGG----GLSQARRLFDESPTR-DV 266

Query: 277 DHYACMVDLLGRAGLLEEAENFIASMPMK 305
             +  MV    + G+L+EA+ F   MP K
Sbjct: 267 FTWTAMVSGYVQNGMLDEAKTFFDEMPEK 295



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 131/555 (23%), Positives = 218/555 (39%), Gaps = 130/555 (23%)

Query: 16  SLIQFYSVCGRV----RDARWVFDESDDLDVVS----WNSMINGYVRNGEILEGLKLFDK 67
           +++   S C       R   + +  + D  V+     +  MI+   R G + E   L   
Sbjct: 497 TMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRN 556

Query: 68  MP-QRNDVSWNSILGGLVRFGSVD----DACRVFNQMPKRSLVSWVVLISGFAQNGRPKE 122
           MP Q    SW ++LG     G+ +     A  VF   P+ S + +V+L + +A +GR  +
Sbjct: 557 MPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGM-YVLLSNLYAASGRWVD 615

Query: 123 ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNW-------VYSYIQKKCIKLDSI 175
           A  +  +M+ + ++       S +    ++     G+        +Y+Y+++  +K+   
Sbjct: 616 ADKMRSKMRDIGVQKVPG--YSWVEVQNKIHTFSVGDCSHPEKERIYAYLEELDLKM--- 670

Query: 176 LCAALIDMYAKCGSIDLAMQVFHSYGDKD---VSAYTSAIFGLAMNGHSIEAFELFENMK 232
                     + G + L   V H   +++   +  Y S    +A    +I        MK
Sbjct: 671 ---------REEGYVSLTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPGGRPIRVMK 721

Query: 233 SKGISPDSISYIAVLSA---------------------CS--------------HLGWVE 257
           +  +  D  S I  +S                      CS              + G ++
Sbjct: 722 NLRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCSCGDYWLQFFLLVVIYTGLLD 781

Query: 258 KGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
            G  YF+ M + + + P   HY CM+DLLGR   LEE                 G LLGA
Sbjct: 782 TGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEE-----------------GALLGA 824

Query: 318 CRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAP 377
            R+H N E+G++   M  +    + G                        MR   +++ P
Sbjct: 825 SRIHGNTELGEKAAQMFFKMGPQNSG---------------------ISKMRDVGVQKVP 863

Query: 378 GCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKE 437
           G S  E+   +H F  G     + + I  F EE+  K++                EEEKE
Sbjct: 864 GYSWFEVQNKIHTFSVGLFLSRERENI-GFLEELDLKMR--------------EREEEKE 908

Query: 438 TVIGYHSEKLALAFGLICTKPGSVIRIVKN-IRICSDCHSAMKLVSKVFKRKISIRDRKH 496
             + Y SE LA A G++    G   R++K  + +C DC SA+K +SK+  R I++RD   
Sbjct: 909 RTLKYLSENLAAALGILTIPVGRPNRVMKKRVYVCEDCRSAIKHMSKIVGRLITLRDS-- 966

Query: 497 YHHFEDGSCSCLEYW 511
            H F +  CSC EYW
Sbjct: 967 -HRFNESICSCGEYW 980



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 88/196 (44%), Gaps = 13/196 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
            VK  +    FV N+L+  Y  CG + +A   F+  ++ DVVSWN+M+ GY R+G   + 
Sbjct: 420 AVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQA 479

Query: 62  LKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV-----SWVVLIS 112
           L +F+ M     + ++++   +L      G +D     F  M K   V      +  +I 
Sbjct: 480 LTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMID 539

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKL 172
              + GR +EA  L R M     +P +A   +LL A    G  + G      + K   + 
Sbjct: 540 LLGRAGRLEEAQDLIRNMP---FQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQ- 595

Query: 173 DSILCAALIDMYAKCG 188
           +S +   L ++YA  G
Sbjct: 596 NSGMYVLLSNLYAASG 611


>gi|218188961|gb|EEC71388.1| hypothetical protein OsI_03510 [Oryza sativa Indica Group]
          Length = 706

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 197/435 (45%), Positives = 283/435 (65%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136
            +++G L   G  D A  +F+ MP+R  V+W  +I+G+   GR +EAL LF EM+     
Sbjct: 272 TAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAA 331

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
                LVS L+ACAQLGAL+ G WV+S    + ++L   L  ALIDMY+KCG++  AM+V
Sbjct: 332 VGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEV 391

Query: 197 FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWV 256
           F S G+++V  +TSA+ GLAMNG   +   LF+ M+S G+ P+ ++++ VL  CS  G V
Sbjct: 392 FDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLV 451

Query: 257 EKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLG 316
           ++G   F SM   HGI P L+HY CMVDL GRAG L++A NFI  MP++P   +WG LL 
Sbjct: 452 DEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLN 511

Query: 317 ACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRA 376
           A R+H+N E+G+   + L+  +  +D  ++LLSNIY ++   +    VR  M+ + +K+ 
Sbjct: 512 ASRIHKNVELGKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGVKKV 571

Query: 377 PGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEK 436
           PGCS IE+ G VHEF  G ++H + +EI     E+ ++++  GY   T+ V+FDIEEE+K
Sbjct: 572 PGCSAIEVGGKVHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEVLFDIEEEDK 631

Query: 437 ETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKH 496
           E  I  HSEKLA+AFGL+       IRIVKN+R+C DCH   K++SKVF R+I +RDR  
Sbjct: 632 EDAISLHSEKLAIAFGLVALPEDMEIRIVKNLRVCEDCHDYTKMISKVFNREIVMRDRNR 691

Query: 497 YHHFEDGSCSCLEYW 511
           +HHF+DG+CSC +YW
Sbjct: 692 FHHFKDGACSCKDYW 706


>gi|297597505|ref|NP_001044065.2| Os01g0715700 [Oryza sativa Japonica Group]
 gi|255673627|dbj|BAF05979.2| Os01g0715700 [Oryza sativa Japonica Group]
          Length = 699

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 198/438 (45%), Positives = 284/438 (64%)

Query: 74  VSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL 133
           V   +++G L   G  D A  +F+ MP+R  V+W  +I+G+   GR +EAL LF EM+  
Sbjct: 262 VCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHA 321

Query: 134 DLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLA 193
                   LVS L+ACAQLGAL+ G WV+S    + ++L   L  ALIDMY+KCG++  A
Sbjct: 322 GAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAA 381

Query: 194 MQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL 253
           M+VF S G+++V  +TSA+ GLAMNG   +   LF+ M+S G+ P+ ++++ VL  CS  
Sbjct: 382 MEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMA 441

Query: 254 GWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGT 313
           G V++G   F SM   HGI P L+HY CMVDL GRAG L++A NFI  MP++P   +WG 
Sbjct: 442 GLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGA 501

Query: 314 LLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKI 373
           LL A R+H+N E+G+   + L+  +  +D  ++LLSNIY ++   +    VR  M+ + +
Sbjct: 502 LLNASRIHKNVELGKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGV 561

Query: 374 KRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEE 433
           K+ PGCS IE+ G VHEF  G ++H + +EI     E+ ++++  GY   T+ V+FDIEE
Sbjct: 562 KKVPGCSAIEVGGKVHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEVLFDIEE 621

Query: 434 EEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRD 493
           E+KE  I  HSEKLA+AFGL+       IRIVKN+R+C DCH   K++SKVF R+I +RD
Sbjct: 622 EDKEDAISLHSEKLAIAFGLVALPEDMEIRIVKNLRVCEDCHDYTKMISKVFNREIVMRD 681

Query: 494 RKHYHHFEDGSCSCLEYW 511
           R  +HHF+DG+CSC +YW
Sbjct: 682 RNRFHHFKDGACSCKDYW 699


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 208/533 (39%), Positives = 316/533 (59%), Gaps = 31/533 (5%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D    N++I  Y+  G +  AR +FDES   DV +W +M++GYV+NG + E    FD+MP
Sbjct: 234 DAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMP 293

Query: 70  QRNDVS-------------------------------WNSILGGLVRFGSVDDACRVFNQ 98
           ++N+VS                               WN+++ G  + G +  A + F+ 
Sbjct: 294 EKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDM 353

Query: 99  MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
           MP+R  VSW  +I+G+AQ+G  +EAL +F E++      N A     LS CA + AL+ G
Sbjct: 354 MPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELG 413

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
             ++    K        +  AL+ MY KCGSID A   F    +KDV ++ + + G A +
Sbjct: 414 KQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARH 473

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDH 278
           G   +A  +FE+MK+ G+ PD I+ + VLSACSH G +++G  YF+SM   +G+ P   H
Sbjct: 474 GFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKH 533

Query: 279 YACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338
           Y CM+DLLGRAG LEEA++ I +MP +P    WG LLGA R+H N E+G++   M+ + +
Sbjct: 534 YTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKME 593

Query: 339 QNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSH 398
             + G Y+LLSN+Y  + +  +A+++R  MR   +++ PG S +E+   +H F  GD SH
Sbjct: 594 PQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSH 653

Query: 399 EKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKP 458
            + + IY + EE+  K++  GY   T+ V+ D+EEEEKE ++ YHSEKLA+AFG++    
Sbjct: 654 PEKERIYAYLEELDLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPG 713

Query: 459 GSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           G  IR++KN+R+C DCHSA+K +SK+  R I +RD   +HHF +G CSC +YW
Sbjct: 714 GRPIRVMKNLRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 148/305 (48%), Gaps = 22/305 (7%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDV 74
           N++I  Y    +   AR +FD+  + D+ SWN M+ GYVRN  + +  +LFD MP+++ V
Sbjct: 84  NAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVV 143

Query: 75  SWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD 134
           SWNS+L G  + G VD+A  VF+ MP+++ +SW  L++ +  NGR +EA  LF      D
Sbjct: 144 SWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWD 203

Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
           L   +     L+    +   L    W++  +  +    D+I    +I  YA+ G +  A 
Sbjct: 204 LISWNC----LMGGFVRKKKLGDARWLFDKMPVR----DAISWNTMISGYAQGGGLSQAR 255

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
           ++F     +DV  +T+ + G   NG   EA   F+ M  K    + +SY A+++      
Sbjct: 256 RLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEK----NEVSYNAMIAGYVQTK 311

Query: 255 WVEKGFYYFHSMFDVHGIKP--ELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWG 312
            ++     F SM       P   +  +  M+   G+ G + +A  F   MP + D V W 
Sbjct: 312 KMDIARELFESM-------PCRNISSWNTMITGYGQIGDIAQARKFFDMMPQR-DCVSWA 363

Query: 313 TLLGA 317
            ++  
Sbjct: 364 AIIAG 368



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 100/376 (26%), Positives = 165/376 (43%), Gaps = 76/376 (20%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D+F  N ++  Y    R+ DAR +FD   + DVVSWNS+++GY +NG + E  ++FD MP
Sbjct: 110 DLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMP 169

Query: 70  QRNDVSWNSILGGLVRFGSVDDACR-------------------------------VFNQ 98
           ++N +SWN +L   V  G +++AC                                +F++
Sbjct: 170 EKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDK 229

Query: 99  MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALD-- 156
           MP R  +SW  +ISG+AQ G   +A  LF E  + D+        +++S   Q G LD  
Sbjct: 230 MPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDV----FTWTAMVSGYVQNGMLDEA 285

Query: 157 --------------YGNWVYSYIQKKCIKL-----DSILCA------ALIDMYAKCGSID 191
                         Y   +  Y+Q K + +     +S+ C        +I  Y + G I 
Sbjct: 286 KTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIA 345

Query: 192 LAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS 251
            A + F     +D  ++ + I G A +GH  EA  +F  +K  G S +  ++   LS C+
Sbjct: 346 QARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCA 405

Query: 252 HLGWVEKGFYYFHSMFDVHGIKPELDH-YACMVD-----LLGRAGLLEEAENFIASMPMK 305
            +  +E G         +HG   ++ +   C V      +  + G ++EA +    +  K
Sbjct: 406 DIAALELG-------KQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEK 458

Query: 306 PDNVIWGTLLGACRVH 321
            D V W T+L     H
Sbjct: 459 -DVVSWNTMLAGYARH 473



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/269 (30%), Positives = 136/269 (50%), Gaps = 21/269 (7%)

Query: 39  DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQ 98
           D D++ WN  I+ ++RNG     L +F+ MP+R+ VS+N+++ G +R    + A  +F+Q
Sbjct: 46  DPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQ 105

Query: 99  MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV--SLLSACAQLGALD 156
           MP+R L SW V+++G+ +N R  +A  LF      DL P   ++   SLLS  AQ G +D
Sbjct: 106 MPERDLFSWNVMLTGYVRNCRLGDARRLF------DLMPEKDVVSWNSLLSGYAQNGYVD 159

Query: 157 YGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLA 216
               V+  + +K    +SI    L+  Y   G I+ A  +F S  D D+ ++   + G  
Sbjct: 160 EAREVFDNMPEK----NSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFV 215

Query: 217 MNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPEL 276
                 +A  LF+ M  +    D+IS+  ++S  +  G    G      +FD    + ++
Sbjct: 216 RKKKLGDARWLFDKMPVR----DAISWNTMISGYAQGG----GLSQARRLFDESPTR-DV 266

Query: 277 DHYACMVDLLGRAGLLEEAENFIASMPMK 305
             +  MV    + G+L+EA+ F   MP K
Sbjct: 267 FTWTAMVSGYVQNGMLDEAKTFFDEMPEK 295



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 88/196 (44%), Gaps = 13/196 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
            VK  +    FV N+L+  Y  CG + +A   F+  ++ DVVSWN+M+ GY R+G   + 
Sbjct: 420 AVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQA 479

Query: 62  LKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV-----SWVVLIS 112
           L +F+ M     + ++++   +L      G +D     F  M K   V      +  +I 
Sbjct: 480 LTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMID 539

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKL 172
              + GR +EA  L R M     +P +A   +LL A    G  + G      + K   + 
Sbjct: 540 LLGRAGRLEEAQDLIRNMP---FQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQ- 595

Query: 173 DSILCAALIDMYAKCG 188
           +S +   L ++YA  G
Sbjct: 596 NSGMYVLLSNLYAASG 611


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/528 (40%), Positives = 317/528 (60%), Gaps = 26/528 (4%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D+F  N ++  Y     ++ AR +F+   + D+VSWN+M++GY +NG + E  ++F KMP
Sbjct: 25  DLFSWNVMLTGYVRNRDLKTARALFERMPERDIVSWNAMLSGYAQNGFVDEAREIFYKMP 84

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVF--------------------------NQMPKRS 103
            +N +SWN +L   V+ G ++DA R+F                          + MP+R 
Sbjct: 85  LKNGISWNGLLAAYVQNGRIEDAKRLFESKMDWTLVSWNCLMGGFVRKRRNLFDNMPQRD 144

Query: 104 LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYS 163
            +SW  +I+G++QNG  +EAL  F EMQ      N +     LS C+ + AL+ G  ++ 
Sbjct: 145 SISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCALSTCSNIAALELGRQLHC 204

Query: 164 YIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIE 223
            + K   +    +  AL+ MY KCGSID A   F    +KDV ++ + I G A +G   E
Sbjct: 205 RLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWNTMIHGYARHGFGEE 264

Query: 224 AFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMV 283
           A  +FE MK+ GI PD  + ++VL+ACSH G V++G  YF+SM   +GI  +L HY CMV
Sbjct: 265 ALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRDYGITAKLVHYTCMV 324

Query: 284 DLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDG 343
           DLLGRAG LEEA+N + +MP +PD   WG LLGA R+H N E+G++   ++ E + ++ G
Sbjct: 325 DLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAQIIFEMEPHNSG 384

Query: 344 RYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQE 403
            YILLS +Y  + +  +A ++R  MR + +K+ PG S +E+   +H F  GD SH  T +
Sbjct: 385 MYILLSKLYAASGRWSDAGKMRLEMRNKGVKKVPGYSWLEVQNKIHTFKVGDTSHPHTDK 444

Query: 404 IYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIR 463
           IY F EE+  K+K  GY   T  V  D+EEEEK  ++ YHSEKLA+A+G++    G  IR
Sbjct: 445 IYTFLEEMDLKLKQEGYISSTNLVFHDVEEEEKVHMLKYHSEKLAVAYGILYIPAGRPIR 504

Query: 464 IVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           ++KN+R+C DCH+A+K +SK+  R I +RD   +H+FE GSCSC ++W
Sbjct: 505 VIKNLRVCEDCHNAIKYISKIVGRLIILRDNHRFHYFEGGSCSCRDFW 552



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 12/166 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +VK  +    +V N+L+  Y  CG + +AR  F E  + DVVSWN+MI+GY R+G   E 
Sbjct: 206 LVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWNTMIHGYARHGFGEEA 265

Query: 62  LKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPK-----RSLVSWVVLIS 112
           L +F+ M     + +D +  S+L      G VD     F  M +       LV +  ++ 
Sbjct: 266 LTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRDYGITAKLVHYTCMVD 325

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
              + G+ +EA  L   M+++  EP++A   +LL A    G  + G
Sbjct: 326 LLGRAGQLEEAQNL---MKNMPFEPDAATWGALLGASRIHGNTELG 368


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/466 (43%), Positives = 299/466 (64%), Gaps = 1/466 (0%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N +I+ Y++ G+     ++FD M  +  VSWNS+  G +R G V+ A  VFNQ+P+R+ V
Sbjct: 372 NVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAV 431

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
            W  +ISG  Q    ++A+ LFREMQ   ++ +   ++ + SAC  LGA +   WV++YI
Sbjct: 432 FWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLGAPELAKWVHTYI 491

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
           +K  I  D  L  AL+DM+A+CG    AMQVF+   ++DVSA+T+AI  +AM G+   A 
Sbjct: 492 EKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGAT 551

Query: 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL 285
            LF  M  +G+ PD + ++ VL+ACSH G VE+G + F  M D HGI P+++HY CMVDL
Sbjct: 552 GLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLMED-HGISPQIEHYGCMVDL 610

Query: 286 LGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRY 345
           LGRAGLL EA + I SMPM+P++V+WG+LL ACRVH+N EM       + E      G +
Sbjct: 611 LGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRAGVH 670

Query: 346 ILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIY 405
           +LLSNIY    K  +   VR  +R++ +++ PG S ++++GV+HEF +GD SH +   I 
Sbjct: 671 VLLSNIYASAGKWTDVARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESHPEMTHIA 730

Query: 406 QFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIV 465
              +E+  +  + G+  +  +V+ D++E+EKE ++  HSEKLA+AFGLI T     IR+V
Sbjct: 731 LMLQEMNCRFSDAGHIPDLSNVLLDVDEQEKEYLLSRHSEKLAIAFGLIATGRSMPIRVV 790

Query: 466 KNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           KN+R+CSDCHS  K+ S ++ R+I +RD   +H F  G CSC +YW
Sbjct: 791 KNLRMCSDCHSFAKMASIIYNREIIVRDNNRFHFFRQGLCSCCDYW 836



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 108/406 (26%), Positives = 177/406 (43%), Gaps = 73/406 (17%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VVK     DVF++N LI FY+ CG +     VF+   + +VVSW S+I GY R     E 
Sbjct: 157 VVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEA 216

Query: 62  LKLFDKMPQR---------------------------------------NDVSWNSILGG 82
           + LF +M +                                        N V  N+++  
Sbjct: 217 VSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDM 276

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
            ++ G++D A R+F++   R+LV +  ++S +A+ G  +EALA+  EM      P+   +
Sbjct: 277 YMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTM 336

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           +S +SA AQL  L YG   + Y+ +  ++    +   +IDMY KCG  ++A +VF    +
Sbjct: 337 LSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSN 396

Query: 203 KDVSAYTSAIFGLAMNG---------HSI----------------------EAFELFENM 231
           K V ++ S   G   NG         + I                      +A ELF  M
Sbjct: 397 KTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREM 456

Query: 232 KSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGL 291
           + +GI  D ++ + + SAC +LG  E    + H+  + +GI  ++     +VD+  R G 
Sbjct: 457 QGEGIKADRVTMMGIASACGYLGAPELA-KWVHTYIEKNGIPCDMRLNTALVDMFARCGD 515

Query: 292 LEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGN-MLIE 336
            + A      M  + D   W   +G   +  N E    + N MLI+
Sbjct: 516 PQSAMQVFNKMTER-DVSAWTAAIGTMAMEGNGEGATGLFNQMLIQ 560



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/251 (33%), Positives = 140/251 (55%), Gaps = 8/251 (3%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVV----SWNSMINGYVRNGEILEGLKLFD 66
           +F+ NSLI+ YS  G  R+A  ++     L V     ++  +++G  +     EG+++  
Sbjct: 96  LFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHG 155

Query: 67  ---KMPQRNDV-SWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKE 122
              KM    DV   N ++      G +D   +VF  M +R++VSW  LI G+A+  RPKE
Sbjct: 156 SVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKE 215

Query: 123 ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182
           A++LF EM    + P+S  +V ++SACA+L  LD G  V +YI +  +KL+ ++  AL+D
Sbjct: 216 AVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVD 275

Query: 183 MYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSIS 242
           MY KCG+ID A ++F    D+++  Y + +   A  G + EA  + + M  +G  PD ++
Sbjct: 276 MYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVT 335

Query: 243 YIAVLSACSHL 253
            ++ +SA + L
Sbjct: 336 MLSAISASAQL 346



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 78/150 (52%)

Query: 110 LISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC 169
           LI G++  G  +EA+ L+  M  L + PN      +LS C ++ A   G  V+  + K  
Sbjct: 102 LIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVKMG 161

Query: 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFE 229
           ++ D  +   LI  YA+CG +D   +VF    +++V ++TS I G A      EA  LF 
Sbjct: 162 LEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFF 221

Query: 230 NMKSKGISPDSISYIAVLSACSHLGWVEKG 259
            M   GI P S++ + V+SAC+ L  ++ G
Sbjct: 222 EMVEAGIRPSSVTMVCVISACAKLRDLDMG 251


>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g40405
 gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/511 (39%), Positives = 314/511 (61%), Gaps = 31/511 (6%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           M ++  F  D  V+  LI  Y+  G +     VF+     D V   +M+    R G+++ 
Sbjct: 133 MTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVF 192

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
             KLF+ MP+R+ ++WN+++ G                               +AQ G  
Sbjct: 193 ARKLFEGMPERDPIAWNAMISG-------------------------------YAQVGES 221

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
           +EAL +F  MQ   ++ N   ++S+LSAC QLGALD G W +SYI++  IK+   L   L
Sbjct: 222 REALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTL 281

Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           +D+YAKCG ++ AM+VF    +K+V  ++SA+ GLAMNG   +  ELF  MK  G++P++
Sbjct: 282 VDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNA 341

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
           +++++VL  CS +G+V++G  +F SM +  GI+P+L+HY C+VDL  RAG LE+A + I 
Sbjct: 342 VTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQ 401

Query: 301 SMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGEN 360
            MPMKP   +W +LL A R+++N E+G      ++E +  + G Y+LLSNIY ++   +N
Sbjct: 402 QMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDN 461

Query: 361 AEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGY 420
              VR++M+ + +++ PGCS++E++G VHEF  GD+SH K  +I   W++I ++++  GY
Sbjct: 462 VSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGY 521

Query: 421 NVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKL 480
             +T  VMFDI+EEEKE  +  HSEK A+AFG++  K    IRIVKN+R+C DCH    +
Sbjct: 522 KADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMM 581

Query: 481 VSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           +SK+F R+I +RDR  +HHF+DG CSC  +W
Sbjct: 582 ISKIFNREIIVRDRNRFHHFKDGHCSCNGFW 612



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 111/240 (46%), Gaps = 34/240 (14%)

Query: 89  VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL--DLEPNSAILVSLL 146
           +D A ++ ++  K +L +   +I    ++  P+++   +R + S   DL+P++  +  L+
Sbjct: 56  LDYANQILDRSEKPTLFALNSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLV 115

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAK-------------------- 186
            AC  L   + G  V+    ++    D  +   LI +YA+                    
Sbjct: 116 QACTGLRMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFV 175

Query: 187 -----------CGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG 235
                      CG +  A ++F    ++D  A+ + I G A  G S EA  +F  M+ +G
Sbjct: 176 CRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEG 235

Query: 236 ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA 295
           +  + ++ I+VLSAC+ LG +++G  + HS  + + IK  +     +VDL  + G +E+A
Sbjct: 236 VKVNGVAMISVLSACTQLGALDQG-RWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKA 294


>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
          Length = 485

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/436 (46%), Positives = 307/436 (70%), Gaps = 1/436 (0%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136
           N+IL    +   ++ A  VFN++ ++ ++SW  ++SG A++G  +E+LALFR+MQ   +E
Sbjct: 50  NAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIE 109

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
           P+   LV +LSACAQ GALD G +++  I K  I  D +L  AL+DMYAKCGSIDLA+QV
Sbjct: 110 PDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQV 169

Query: 197 FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWV 256
           F     ++V  + + I GLAM+GH  +A  LF+ M+   + PD +++IA+L ACSH G V
Sbjct: 170 FRRMRVRNVFTWNAMIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLV 229

Query: 257 EKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLG 316
           ++G   F +M +   I+P ++HY C+VDLL RA  +++A  FI +MP+K ++V+W TLLG
Sbjct: 230 DEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLG 289

Query: 317 ACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRA 376
           ACR   + ++ ++I   +IE + +  GRY++LSN+Y    + ++A ++RK M+ + I++ 
Sbjct: 290 ACRSGGHFDLAEKIXRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKT 349

Query: 377 PGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVE-TRSVMFDIEEEE 435
           PGCS IEL+G++H+F+AGDRSH +T++IY   EE+ +++   G +V  T +V+FDIEEEE
Sbjct: 350 PGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTANVLFDIEEEE 409

Query: 436 KETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRK 495
           KE  +  HSEKLA+A GLI T  GS IRIVKN+R+C+DCHS +K+ SKV+ R+I  RDR 
Sbjct: 410 KEHSLFLHSEKLAIALGLISTPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNREIVARDRS 469

Query: 496 HYHHFEDGSCSCLEYW 511
            +HHF++GSCSC+++W
Sbjct: 470 RFHHFKEGSCSCMDFW 485



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/197 (33%), Positives = 110/197 (55%), Gaps = 3/197 (1%)

Query: 130 MQSLD-LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCG 188
           M  LD L P+   +VSL+ ACAQLG L+ G  ++SY ++  +  +  +  A++DMY KC 
Sbjct: 1   MTKLDNLRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCD 60

Query: 189 SIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248
            I+ A +VF+   +KDV ++TS + GLA +G+  E+  LF  M+   I PD I+ + VLS
Sbjct: 61  DIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLS 120

Query: 249 ACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDN 308
           AC+  G +++G  Y H + D   I  +L     +VD+  + G ++ A      M ++ + 
Sbjct: 121 ACAQTGALDQG-KYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVR-NV 178

Query: 309 VIWGTLLGACRVHRNAE 325
             W  ++G   +H + E
Sbjct: 179 FTWNAMIGGLAMHGHGE 195



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 127/280 (45%), Gaps = 49/280 (17%)

Query: 13  VKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP--- 69
           V N+++  Y  C  +  A+ VF+   + DV+SW SM++G  ++G   E L LF KM    
Sbjct: 48  VNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHK 107

Query: 70  -QRNDVSWNSIL------GGL-----------------------------VRFGSVDDAC 93
            + ++++   +L      G L                              + GS+D A 
Sbjct: 108 IEPDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLAL 167

Query: 94  RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153
           +VF +M  R++ +W  +I G A +G  ++A++LF +M+   L P+    ++LL AC+  G
Sbjct: 168 QVFRRMRVRNVFTWNAMIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAG 227

Query: 154 ALDYGNWVYSYIQKKC---IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
            +D G  ++  ++ K     +++   C  ++D+  +   +D A+    +   K  S   +
Sbjct: 228 LVDEGLAMFQAMKNKFQIEPRMEHYGC--VVDLLCRARKVDDALAFIENMPIKANSVLWA 285

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGI--SPDSISYIAVLS 248
            + G   +G     F+L E +  + I   PDS     +LS
Sbjct: 286 TLLGACRSGGH---FDLAEKIXRRVIELEPDSCGRYVMLS 322



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 101/222 (45%), Gaps = 20/222 (9%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D+ ++ +L+  Y+ CG +  A  VF      +V +WN+MI G   +G   + + LFD+M 
Sbjct: 146 DLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMIGGLAMHGHGEDAISLFDQME 205

Query: 70  ----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLISGFAQNGRP 120
                 +DV++ ++L      G VD+   +F  M  +  +      +  ++    +  + 
Sbjct: 206 XDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKV 265

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCA-- 178
            +ALA    ++++ ++ NS +  +LL AC   G  D        I ++ I+L+   C   
Sbjct: 266 DDALAF---IENMPIKANSVLWATLLGACRSGGHFDLA----EKIXRRVIELEPDSCGRY 318

Query: 179 -ALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNG 219
             L ++YA     D A+++     +K +   T     + +NG
Sbjct: 319 VMLSNLYAGVSQWDHALKLRKQMKNKGIEK-TPGCSWIELNG 359


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/502 (40%), Positives = 309/502 (61%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DVF   +++  Y+  G + +AR VFD   + + VSWN+M+  Y++   + E  +LF+ MP
Sbjct: 254 DVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMP 313

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE 129
            RN  SWN++L G  + G +++A  VF+ MP++  VSW  +++ ++Q G  +E L LF E
Sbjct: 314 CRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIE 373

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
           M       N +    +LS CA + AL+ G  ++  + +    +   +  AL+ MY KCG+
Sbjct: 374 MGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGN 433

Query: 190 IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
           ++ A   F    ++DV ++ + I G A +G   EA E+F+ M++    PD I+ + VL+A
Sbjct: 434 MEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAA 493

Query: 250 CSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNV 309
           CSH G VEKG  YF+SM    G+  + +HY CM+DLLGRAG L EA + +  MP +PD+ 
Sbjct: 494 CSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDST 553

Query: 310 IWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMR 369
           +WG LLGA R+HRN E+G+     + E +  + G Y+LLSNIY  + K  +A ++R  M 
Sbjct: 554 MWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMME 613

Query: 370 KRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMF 429
           +R +K+ PG S IE+   VH F AGD  H + ++IY F E++  ++K  GY   T  V+ 
Sbjct: 614 ERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLH 673

Query: 430 DIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKI 489
           D+EEEEKE ++ YHSEKLA+A+G++   PG  IR++KN+R+C DCH+A K +S +  R I
Sbjct: 674 DVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRLI 733

Query: 490 SIRDRKHYHHFEDGSCSCLEYW 511
            +RD   +HHF  GSCSC +YW
Sbjct: 734 LLRDSNRFHHFRGGSCSCGDYW 755



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 166/334 (49%), Gaps = 12/334 (3%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D    N ++  Y   GRV +AR +F+   + D +SWN++++GYV+ G++ E  +LFD+MP
Sbjct: 161 DAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQWGKMSEARELFDRMP 220

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE 129
            R+ VSWN ++ G  R G + +A R+F+  P R + +W  ++SG+AQNG  +EA  +F  
Sbjct: 221 GRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDA 280

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
           M     E N+    ++++A  Q   +D    +++ +   C  + S     ++  YA+ G 
Sbjct: 281 MP----ERNAVSWNAMVAAYIQRRMMDEAKELFNMM--PCRNVAS--WNTMLTGYAQAGM 332

Query: 190 IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
           ++ A  VF +   KD  ++ + +   +  G S E  +LF  M   G   +  ++  VLS 
Sbjct: 333 LEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLST 392

Query: 250 CSHLGWVEKGFYYFHSMFDV-HGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDN 308
           C+ +  +E G      +    +G+   + +   ++ +  + G +E+A N    M  + D 
Sbjct: 393 CADIAALECGMQLHGRLIRAGYGVGCFVGN--ALLAMYFKCGNMEDARNAFEEMEER-DV 449

Query: 309 VIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD 342
           V W T++     H   +    I +M+  +    D
Sbjct: 450 VSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPD 483



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 144/266 (54%), Gaps = 17/266 (6%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           M V++S  Y+V     +I  ++  G V  AR  FD + + D VSWN M+  YVRNG + E
Sbjct: 126 MPVRDSVTYNV-----MISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEE 180

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
              LF+   + + +SWN+++ G V++G + +A  +F++MP R +VSW +++SG+A+ G  
Sbjct: 181 ARGLFNSRTEWDAISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDM 240

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
            EA  LF      D+   +A+    +S  AQ G L+    V+  + ++    +++   A+
Sbjct: 241 VEARRLFDAAPVRDVFTWTAV----VSGYAQNGMLEEARRVFDAMPER----NAVSWNAM 292

Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           +  Y +   +D A ++F+    ++V+++ + + G A  G   EA  +F+ M  K    D+
Sbjct: 293 VAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQK----DA 348

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSM 266
           +S+ A+L+A S  G  E+    F  M
Sbjct: 349 VSWAAMLAAYSQGGCSEETLQLFIEM 374



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 140/310 (45%), Gaps = 53/310 (17%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D +  N+L+   +V   + DAR +FDE    D V++N MI+ +  +G +      FD  P
Sbjct: 99  DNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAP 158

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE 129
           +++ VSWN +L   VR G V++A  +FN   +   +SW  L+SG+ Q G+  EA  LF  
Sbjct: 159 EKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQWGKMSEARELFDR 218

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
           M   D+                                       +    ++  YA+ G 
Sbjct: 219 MPGRDV---------------------------------------VSWNIMVSGYARRGD 239

Query: 190 IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
           +  A ++F +   +DV  +T+ + G A NG   EA  +F+ M  +    +++S+ A+++A
Sbjct: 240 MVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER----NAVSWNAMVAA 295

Query: 250 CSHLGWVEKGFYYFHSMFDVHGIKP--ELDHYACMVDLLGRAGLLEEAENFIASMPMKPD 307
                 +++    F+ M       P   +  +  M+    +AG+LEEA+    +MP K D
Sbjct: 296 YIQRRMMDEAKELFNMM-------PCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQK-D 347

Query: 308 NVIWGTLLGA 317
            V W  +L A
Sbjct: 348 AVSWAAMLAA 357



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 12/156 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++  +    FV N+L+  Y  CG + DAR  F+E ++ DVVSWN+MI GY R+G   E 
Sbjct: 409 LIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEA 468

Query: 62  LKLFDKM----PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLIS 112
           L++FD M     + +D++   +L      G V+     F  M     V+     +  +I 
Sbjct: 469 LEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMID 528

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148
              + GR  EA  L ++M     EP+S +  +LL A
Sbjct: 529 LLGRAGRLAEAHDLMKDMP---FEPDSTMWGALLGA 561


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/502 (40%), Positives = 309/502 (61%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DVF   +++  Y+  G + +AR VFD   + + VSWN+M+  Y++   + E  +LF+ MP
Sbjct: 254 DVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMP 313

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE 129
            RN  SWN++L G  + G +++A  VF+ MP++  VSW  +++ ++Q G  +E L LF E
Sbjct: 314 CRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIE 373

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
           M       N +    +LS CA + AL+ G  ++  + +    +   +  AL+ MY KCG+
Sbjct: 374 MGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGN 433

Query: 190 IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
           ++ A   F    ++DV ++ + I G A +G   EA E+F+ M++    PD I+ + VL+A
Sbjct: 434 MEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAA 493

Query: 250 CSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNV 309
           CSH G VEKG  YF+SM    G+  + +HY CM+DLLGRAG L EA + +  MP +PD+ 
Sbjct: 494 CSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDST 553

Query: 310 IWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMR 369
           +WG LLGA R+HRN E+G+     + E +  + G Y+LLSNIY  + K  +A ++R  M 
Sbjct: 554 MWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMME 613

Query: 370 KRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMF 429
           +R +K+ PG S IE+   VH F AGD  H + ++IY F E++  ++K  GY   T  V+ 
Sbjct: 614 ERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLH 673

Query: 430 DIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKI 489
           D+EEEEKE ++ YHSEKLA+A+G++   PG  IR++KN+R+C DCH+A K +S +  R I
Sbjct: 674 DVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRLI 733

Query: 490 SIRDRKHYHHFEDGSCSCLEYW 511
            +RD   +HHF  GSCSC +YW
Sbjct: 734 LLRDSNRFHHFRGGSCSCGDYW 755



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 163/333 (48%), Gaps = 10/333 (3%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D    N ++  Y   GRV +AR +F+   + DV+SWN++++GYV+ G++ E  +LFD+MP
Sbjct: 161 DAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMP 220

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE 129
            R+ VSWN ++ G  R G + +A R+F+  P R + +W  ++SG+AQNG  +EA  +F  
Sbjct: 221 GRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDA 280

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
           M     E N+    ++++A  Q   +D    +++ +   C  + S     ++  YA+ G 
Sbjct: 281 MP----ERNAVSWNAMVAAYIQRRMMDEAKELFNMM--PCRNVAS--WNTMLTGYAQAGM 332

Query: 190 IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
           ++ A  VF +   KD  ++ + +   +  G S E  +LF  M   G   +  ++  VLS 
Sbjct: 333 LEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLST 392

Query: 250 CSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNV 309
           C+ +  +E G    H      G          ++ +  + G +E+A N    M  + D V
Sbjct: 393 CADIAALECGM-QLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEER-DVV 450

Query: 310 IWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD 342
            W T++     H   +    I +M+  +    D
Sbjct: 451 SWNTMIAGYARHGFGKEALEIFDMMRTTSTKPD 483



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 144/266 (54%), Gaps = 17/266 (6%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           M V++S  Y+V     +I  ++  G V  AR  FD + + D VSWN M+  YVRNG + E
Sbjct: 126 MPVRDSVTYNV-----MISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEE 180

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
              LF+   + + +SWN+++ G V++G + +A  +F++MP R +VSW +++SG+A+ G  
Sbjct: 181 ARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDM 240

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
            EA  LF      D+   +A+    +S  AQ G L+    V+  + ++    +++   A+
Sbjct: 241 VEARRLFDAAPVRDVFTWTAV----VSGYAQNGMLEEARRVFDAMPER----NAVSWNAM 292

Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           +  Y +   +D A ++F+    ++V+++ + + G A  G   EA  +F+ M  K    D+
Sbjct: 293 VAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQK----DA 348

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSM 266
           +S+ A+L+A S  G  E+    F  M
Sbjct: 349 VSWAAMLAAYSQGGCSEETLQLFIEM 374



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 141/310 (45%), Gaps = 53/310 (17%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D +  N+L+   +V   + DAR +FDE    D V++N MI+ +  +G +      FD  P
Sbjct: 99  DNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAP 158

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE 129
           +++ VSWN +L   VR G V++A  +FN   +  ++SW  L+SG+ Q G+  EA  LF  
Sbjct: 159 EKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDR 218

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
           M   D+                                       +    ++  YA+ G 
Sbjct: 219 MPGRDV---------------------------------------VSWNIMVSGYARRGD 239

Query: 190 IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
           +  A ++F +   +DV  +T+ + G A NG   EA  +F+ M  +    +++S+ A+++A
Sbjct: 240 MVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER----NAVSWNAMVAA 295

Query: 250 CSHLGWVEKGFYYFHSMFDVHGIKP--ELDHYACMVDLLGRAGLLEEAENFIASMPMKPD 307
                 +++    F+ M       P   +  +  M+    +AG+LEEA+    +MP K D
Sbjct: 296 YIQRRMMDEAKELFNMM-------PCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQK-D 347

Query: 308 NVIWGTLLGA 317
            V W  +L A
Sbjct: 348 AVSWAAMLAA 357



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 12/156 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++  +    FV N+L+  Y  CG + DAR  F+E ++ DVVSWN+MI GY R+G   E 
Sbjct: 409 LIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEA 468

Query: 62  LKLFDKM----PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLIS 112
           L++FD M     + +D++   +L      G V+     F  M     V+     +  +I 
Sbjct: 469 LEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMID 528

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148
              + GR  EA  L ++M     EP+S +  +LL A
Sbjct: 529 LLGRAGRLAEAHDLMKDMP---FEPDSTMWGALLGA 561


>gi|414885893|tpg|DAA61907.1| TPA: hypothetical protein ZEAMMB73_945776 [Zea mays]
          Length = 584

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/503 (42%), Positives = 314/503 (62%), Gaps = 35/503 (6%)

Query: 13  VKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRN 72
           V+  L+  Y+VCG +  AR VFD   D D+V+                            
Sbjct: 113 VRCRLVHAYAVCGMLPHARRVFDGGTDNDMVA---------------------------- 144

Query: 73  DVSWNSILGGLVRFGSVDDACR-VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM- 130
              WN +L G  + G  +D  R  F +MP R  VSW  ++S    NG   EA+A+FREM 
Sbjct: 145 ---WNCLLRGYAQEGGDEDLLRDFFARMPSRDSVSWNTVLSWCVVNGEYDEAIAVFREML 201

Query: 131 QSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSI 190
            S + +P+   LVS++SA A LGAL +G W ++Y+ +KCI+++  L +ALI+MY+KCG I
Sbjct: 202 ASQECQPDRVTLVSVVSAIAYLGALAHGLWAHAYVFRKCIEVEEKLSSALINMYSKCGFI 261

Query: 191 DLAMQVFHSYGDK-DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
           + A+ VF + G K  +  + + + G   NG+S  A ELF  M+S  + P+ I++  VL+A
Sbjct: 262 EGAVYVFDNVGGKRSLDTWNAMLAGFTANGYSERALELFTRMESTRLMPNKITFNTVLNA 321

Query: 250 CSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNV 309
           CSH G VE+G  YF  M   +GI+P++ HY CMVDL  RAG+ E+AE  I +MPM+PD  
Sbjct: 322 CSHGGLVEEGMKYFQRMSRFYGIEPDIAHYGCMVDLFCRAGMFEKAEEIIQTMPMEPDAS 381

Query: 310 IWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMR 369
           +   LLGACR H+N E+G+++G+ LIE+  N    Y+LLSNIY          +VRK M 
Sbjct: 382 MLKALLGACRTHKNLELGKKVGHRLIEAAANDHAGYVLLSNIYALDGNWGGVHKVRKLML 441

Query: 370 KRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMF 429
            R + + PG S +EL+GV+HEF++GD+SH + ++IY+   EI +++K+ GY  +T  V+ 
Sbjct: 442 DRGVLKTPGSSSVELNGVIHEFISGDKSHSRKRDIYKMLGEICQQLKSSGYTPDTSQVLL 501

Query: 430 DIEEEE-KETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRK 488
           DI++E+ KE+ +  HSEKLA+AFGLI T PG+ IR+V N+RIC DCH+A+KL+SK++ R 
Sbjct: 502 DIDDEDVKESSLALHSEKLAIAFGLISTAPGTPIRVVNNLRICGDCHNAIKLISKIYGRC 561

Query: 489 ISIRDRKHYHHFEDGSCSCLEYW 511
           I +RD   +HHF  GSCSC +YW
Sbjct: 562 IIVRDANRFHHFRKGSCSCGDYW 584


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/502 (40%), Positives = 309/502 (61%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DVF   +++  Y+  G + +AR VFD   + + VSWN+M+  Y++   + E  +LF+ MP
Sbjct: 129 DVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMP 188

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE 129
            RN  SWN++L G  + G +++A  VF+ MP++  VSW  +++ ++Q G  +E L LF E
Sbjct: 189 CRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIE 248

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
           M       N +    +LS CA + AL+ G  ++  + +    +   +  AL+ MY KCG+
Sbjct: 249 MGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGN 308

Query: 190 IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
           ++ A   F    ++DV ++ + I G A +G   EA E+F+ M++    PD I+ + VL+A
Sbjct: 309 MEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAA 368

Query: 250 CSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNV 309
           CSH G VEKG  YF+SM    G+  + +HY CM+DLLGRAG L EA + +  MP +PD+ 
Sbjct: 369 CSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDST 428

Query: 310 IWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMR 369
           +WG LLGA R+HRN E+G+     + E +  + G Y+LLSNIY  + K  +A ++R  M 
Sbjct: 429 MWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMME 488

Query: 370 KRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMF 429
           +R +K+ PG S IE+   VH F AGD  H + ++IY F E++  ++K  GY   T  V+ 
Sbjct: 489 ERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLH 548

Query: 430 DIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKI 489
           D+EEEEKE ++ YHSEKLA+A+G++   PG  IR++KN+R+C DCH+A K +S +  R I
Sbjct: 549 DVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRLI 608

Query: 490 SIRDRKHYHHFEDGSCSCLEYW 511
            +RD   +HHF  GSCSC +YW
Sbjct: 609 LLRDSNRFHHFRGGSCSCGDYW 630



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 163/333 (48%), Gaps = 10/333 (3%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D    N ++  Y   GRV +AR +F+   + DV+SWN++++GYV+ G++ E  +LFD+MP
Sbjct: 36  DAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMP 95

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE 129
            R+ VSWN ++ G  R G + +A R+F+  P R + +W  ++SG+AQNG  +EA  +F  
Sbjct: 96  GRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDA 155

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
           M     E N+    ++++A  Q   +D    +++ +   C  + S     ++  YA+ G 
Sbjct: 156 MP----ERNAVSWNAMVAAYIQRRMMDEAKELFNMM--PCRNVAS--WNTMLTGYAQAGM 207

Query: 190 IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
           ++ A  VF +   KD  ++ + +   +  G S E  +LF  M   G   +  ++  VLS 
Sbjct: 208 LEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLST 267

Query: 250 CSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNV 309
           C+ +  +E G    H      G          ++ +  + G +E+A N    M  + D V
Sbjct: 268 CADIAALECGM-QLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEER-DVV 325

Query: 310 IWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD 342
            W T++     H   +    I +M+  +    D
Sbjct: 326 SWNTMIAGYARHGFGKEALEIFDMMRTTSTKPD 358



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 12/156 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++  +    FV N+L+  Y  CG + DAR  F+E ++ DVVSWN+MI GY R+G   E 
Sbjct: 284 LIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEA 343

Query: 62  LKLFDKM----PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLIS 112
           L++FD M     + +D++   +L      G V+     F  M     V+     +  +I 
Sbjct: 344 LEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMID 403

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148
              + GR  EA  L ++M     EP+S +  +LL A
Sbjct: 404 LLGRAGRLAEAHDLMKDMP---FEPDSTMWGALLGA 436


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 210/550 (38%), Positives = 333/550 (60%), Gaps = 40/550 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VVK     D++++ +L+  Y+ CG ++ AR++F+     + V W SMI+GY++N    E 
Sbjct: 105 VVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEA 164

Query: 62  LKLFDKMPQRN----------------------------------DVSWNSILGGLV--- 84
           L L+ KM +                                    D+   ++LG  +   
Sbjct: 165 LLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNM 224

Query: 85  --RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQS-LDLEPNSAI 141
             + G +  A +VF+++  + + +W  LI G+ +N R  EAL LFRE+    ++ PN   
Sbjct: 225 YAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVT 284

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           +++++SACAQLG L+ G WV+ YI +        L  +LIDM++KCG ID A ++F S  
Sbjct: 285 ILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMS 344

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
            KD+ ++ S + G A++G   EA   F  M++  + PD I++I VL+ACSH G V++G  
Sbjct: 345 YKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQEGKK 404

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            F+ +  ++G++ + +HY CMVDLL RAGLL EA  FI  MP++PD  IWG++LGACRV+
Sbjct: 405 LFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVY 464

Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
            N E+G+     L++ +  +DG YILLSNIY +       ++VR+ M ++ I++ PGCS 
Sbjct: 465 NNLELGEEAARFLLKLEPTNDGVYILLSNIYAKRKMWNEVKKVRELMNEKGIQKTPGCSS 524

Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIG 441
           + +D + H FLAGD SH +  EI     ++ +K+K  GY  +T  V+ +I++ +KE  + 
Sbjct: 525 VVIDNIAHSFLAGDCSHPEIAEISIMLRQVREKLKLAGYVADTSEVLLNIDDNKKEESVS 584

Query: 442 YHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
            HSEKLAL +GL+ ++ G  I I+KN+R+CSDCH+ +KLVSK+++R+I++RDR  +HHF+
Sbjct: 585 QHSEKLALCYGLLKSEIGGRIVILKNLRVCSDCHTLIKLVSKIYQRQITLRDRNRFHHFK 644

Query: 502 DGSCSCLEYW 511
           DGSCSC +YW
Sbjct: 645 DGSCSCRDYW 654



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 115/264 (43%), Gaps = 18/264 (6%)

Query: 75  SWNSILGGLVRFGS--VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQS 132
           S N ++  ++  GS  V  A  VF    +  +++W  ++  F  +  P+ AL  + EM  
Sbjct: 12  SLNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLE 71

Query: 133 LDLE-PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSID 191
                P+     SLL  CA L     G  ++  + K  +  D  +   L++MYA CG + 
Sbjct: 72  RSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLK 131

Query: 192 LAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS 251
            A  +F   G ++   +TS I G   N    EA  L++ M+  G SPD ++   ++SAC+
Sbjct: 132 SARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACA 191

Query: 252 HLGWVEKGFYYFHSMFDVHGIKPELDHYAC------MVDLLGRAGLLEEAENFIASMPMK 305
            L  +  G         +H    E+D   C      +V++  + G L+ A      +  K
Sbjct: 192 ELKDLGVG-------MKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDK 244

Query: 306 PDNVIWGTLL-GACRVHRNAEMGQ 328
            D   W  L+ G  + +R+ E  Q
Sbjct: 245 -DVYAWSALIFGYVKNNRSTEALQ 267


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 209/509 (41%), Positives = 324/509 (63%), Gaps = 32/509 (6%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +K   + +  V+  +++ Y  CG + DAR VF+E  + DVV+   MI+ Y   G      
Sbjct: 174 LKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPE-DVVASTVMISSYSDQG------ 226

Query: 63  KLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKE 122
                                     V++A  VF+++ ++  V W  +I GF +N     
Sbjct: 227 -------------------------LVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNR 261

Query: 123 ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182
           AL  FR MQ  ++ PN   +V +LSAC+QLGAL+ G WV+SY++K  I+L+  +  ALI+
Sbjct: 262 ALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALIN 321

Query: 183 MYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSIS 242
           MY++CGSID A  VF    D+DV  Y + I GL+MNG S +A ELF  M  + + P +++
Sbjct: 322 MYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVT 381

Query: 243 YIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM 302
           ++ VL+ACSH G V+ GF  FHSM   +G++P+++HY CMVDLLGR G LEEA + I +M
Sbjct: 382 FVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTM 441

Query: 303 PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAE 362
            M PD+++ GTLL AC++H+N E+G+++  +L +  Q   G Y+LLS++Y  + K + A 
Sbjct: 442 KMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQADSGTYVLLSHVYASSGKWKEAA 501

Query: 363 EVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNV 422
           +VR  M++  +++ PGCS IE++  +HEFL GD  H + + IY+  EE+ + ++  GY+ 
Sbjct: 502 QVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPRKERIYEKLEELNRLLRLEGYHP 561

Query: 423 ETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVS 482
           E   V+ DIE+ EKE  +  HSE+LA+ +GLI T+P +VIR++KN+R+C DCHSA+KL++
Sbjct: 562 EKEVVLQDIEDGEKEWALAIHSERLAICYGLISTEPCTVIRVMKNLRVCYDCHSAIKLIA 621

Query: 483 KVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           K+ +RK+ +RDR  +H+FE+G+CSC +YW
Sbjct: 622 KITRRKVVVRDRNRFHYFENGACSCGDYW 650



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 115/258 (44%), Gaps = 32/258 (12%)

Query: 88  SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLS 147
           ++D A R+F      ++  +  LI GF  +G   +A+ L+  M    + P++ ++ S+L 
Sbjct: 96  AIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILK 155

Query: 148 ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH--------- 198
           AC    AL  G  V+S   K  +  + ++   ++++Y KCG +  A +VF          
Sbjct: 156 ACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAS 215

Query: 199 -----SYGD----------------KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGIS 237
                SY D                KD   +T+ I G   N     A E F  M+ + + 
Sbjct: 216 TVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVR 275

Query: 238 PDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAEN 297
           P+  + + VLSACS LG +E G  + HS      I+  L     ++++  R G ++EA+ 
Sbjct: 276 PNEFTIVCVLSACSQLGALEIG-RWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQT 334

Query: 298 FIASMPMKPDNVIWGTLL 315
               M  + D + + T++
Sbjct: 335 VFDEMKDR-DVITYNTMI 351



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 66/143 (46%), Gaps = 4/143 (2%)

Query: 173 DSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMK 232
           D  +   L+   +KC +ID A ++F    + +V  YT+ I G   +G+  +A +L+  M 
Sbjct: 80  DPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRML 139

Query: 233 SKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLL 292
              I PD+    ++L AC     + +G    HS     G+         +++L G+ G L
Sbjct: 140 HDSILPDNYLMASILKACGSQLALREG-REVHSRALKLGLSSNRLVRLRIMELYGKCGEL 198

Query: 293 EEAENFIASMPMKPDNVIWGTLL 315
            +A      M   P++V+  T++
Sbjct: 199 GDARRVFEEM---PEDVVASTVM 218


>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
 gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
          Length = 635

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/511 (42%), Positives = 320/511 (62%), Gaps = 2/511 (0%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +K+     +FV  +LI  Y  CG V  AR VFDE    ++V+WN++I    R  ++    
Sbjct: 125 LKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDVAGAR 184

Query: 63  KLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKE 122
           ++FDKM  RN  SWN +L G ++ G ++ A R+F++MP R  VSW  +I G A NG   E
Sbjct: 185 EIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNE 244

Query: 123 ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182
           +   FRE+Q   + PN   L  +LSAC+Q G+ ++G  ++ +++K        +  ALID
Sbjct: 245 SFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALID 304

Query: 183 MYAKCGSIDLAMQVFHSYGDKD-VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
           MY++CG++ +A  VF    +K  + ++TS I GLAM+G   EA  LF  M + G++PD I
Sbjct: 305 MYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGI 364

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
           S+I++L ACSH G +E+G  YF  M  V+ I+PE++HY CMVDL GR+G L++A +FI  
Sbjct: 365 SFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQ 424

Query: 302 MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361
           MP+ P  ++W TLLGAC  H N E+ +++   L E D N+ G  +LLSN Y    K ++ 
Sbjct: 425 MPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAGKWKDV 484

Query: 362 EEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKN-YGY 420
             +RK+M  ++IK+    SL+E+   +++F AG++      E ++  +EI+ ++K+  GY
Sbjct: 485 ASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEIILRLKDEAGY 544

Query: 421 NVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKL 480
             E  S ++D+EEEEKE  +  HSEKLALAF L     G+ IRIVKN+RIC DCH+ MKL
Sbjct: 545 TPEVASALYDVEEEEKEDQVSKHSEKLALAFALARLSKGANIRIVKNLRICRDCHAVMKL 604

Query: 481 VSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            SKV+  +I +RDR  +H F+DGSCSC +YW
Sbjct: 605 TSKVYGVEILVRDRNRFHSFKDGSCSCRDYW 635



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 85/170 (50%), Gaps = 13/170 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLD-VVSWNSMINGYVRNGEILE 60
           V K  +++ V V N+LI  YS CG V  AR VF+   +   +VSW SMI G   +G+  E
Sbjct: 287 VEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEE 346

Query: 61  GLKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPK-----RSLVSWVVLI 111
            ++LF++M       + +S+ S+L      G +++    F++M +       +  +  ++
Sbjct: 347 AVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMV 406

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161
             + ++G+ ++A     +M    + P + +  +LL AC+  G ++    V
Sbjct: 407 DLYGRSGKLQKAYDFICQMP---IPPTAIVWRTLLGACSSHGNIELAEQV 453



 Score = 46.6 bits (109), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 50/243 (20%), Positives = 96/243 (39%), Gaps = 17/243 (6%)

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE-PNSAILVSLLSACA 150
           A R+    P+     +  L+ G++++  P  ++A+F EM       P+S     ++ A  
Sbjct: 50  ARRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVE 109

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
              +L  G  ++    K  ++    +   LI MY  CG ++ A +VF      ++ A+ +
Sbjct: 110 NFRSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNA 169

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I           A E+F+ M    +  +  S+  +L+     G +E     F  M    
Sbjct: 170 VITACFRGNDVAGAREIFDKM----LVRNHTSWNVMLAGYIKAGELESAKRIFSEM---- 221

Query: 271 GIKPELD--HYACMVDLLGRAGLLEEAENFIASMP---MKPDNVIWGTLLGACRVHRNAE 325
              P  D   ++ M+  +   G   E+  +   +    M P+ V    +L AC    + E
Sbjct: 222 ---PHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFE 278

Query: 326 MGQ 328
            G+
Sbjct: 279 FGK 281


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/502 (41%), Positives = 309/502 (61%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DVF   +++  Y   G + +AR VFDE      +S+N MI GY +   +  G +LF++MP
Sbjct: 249 DVFTWTAMVYAYVQDGMLDEARRVFDEMPQKREMSYNVMIAGYAQYKRMDMGRELFEEMP 308

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE 129
             N  SWN ++ G  + G +  A  +F+ MP+R  VSW  +I+G+AQNG  +EA+ +  E
Sbjct: 309 FPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVE 368

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
           M+      N +     LSACA + AL+ G  V+  + +   +   ++  AL+ MY KCG 
Sbjct: 369 MKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGC 428

Query: 190 IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
           ID A  VF     KD+ ++ + + G A +G   +A  +FE+M + G+ PD I+ + VLSA
Sbjct: 429 IDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSA 488

Query: 250 CSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNV 309
           CSH G  ++G  YFHSM   +GI P   HYACM+DLLGRAG LEEA+N I +MP +PD  
Sbjct: 489 CSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAA 548

Query: 310 IWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMR 369
            WG LLGA R+H N E+G++   M+ + + ++ G Y+LLSN+Y  + +  +  ++R  MR
Sbjct: 549 TWGALLGASRIHGNMELGEQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMR 608

Query: 370 KRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMF 429
           +  +++ PG S +E+   +H F  GD  H +   IY F EE+  K+K+ GY   T+ V+ 
Sbjct: 609 QIGVQKTPGYSWVEVQNKIHTFTVGDCFHPEKGRIYAFLEELDLKMKHEGYVSSTKLVLH 668

Query: 430 DIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKI 489
           D+EEEEK+ ++ YHSEKLA+AFG++    G  IR++KN+R+C DCH+A+K +SK+  R I
Sbjct: 669 DVEEEEKKHMLKYHSEKLAVAFGILTMPSGKPIRVMKNLRVCEDCHNAIKHISKIVGRLI 728

Query: 490 SIRDRKHYHHFEDGSCSCLEYW 511
            +RD   YHHF +G CSC +YW
Sbjct: 729 IVRDSHRYHHFSEGICSCRDYW 750



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 99/366 (27%), Positives = 161/366 (43%), Gaps = 56/366 (15%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D+F  N ++  Y+   R+RDAR +FD   + DVVSWN+M++GYVR+G + E   +FD+MP
Sbjct: 94  DLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMP 153

Query: 70  QRNDVSWNSILGGLVRFGSVDDACR-------------------------------VFNQ 98
            +N +SWN +L   VR G +++A R                               +F+Q
Sbjct: 154 HKNSISWNGLLAAYVRSGRLEEARRLFESKSDWELISCNCLMGGYVKRNMLGDARQLFDQ 213

Query: 99  MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS------------LL 146
           +P R L+SW  +ISG+AQ+G   +A  LF E    D+   +A++ +            + 
Sbjct: 214 IPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVF 273

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAA-----------LIDMYAKCGSIDLAMQ 195
               Q   + Y   +  Y Q K + +   L              +I  Y + G +  A  
Sbjct: 274 DEMPQKREMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGSWNIMISGYCQNGDLAQARN 333

Query: 196 VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGW 255
           +F     +D  ++ + I G A NG   EA  +   MK  G S +  ++   LSAC+ +  
Sbjct: 334 LFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAA 393

Query: 256 VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
           +E G    H      G +        +V +  + G ++EA +    +  K D V W T+L
Sbjct: 394 LELG-KQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHK-DIVSWNTML 451

Query: 316 GACRVH 321
                H
Sbjct: 452 AGYARH 457



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/336 (27%), Positives = 160/336 (47%), Gaps = 26/336 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           M ++NS +Y     N++I  Y    +   AR +FD+    D+ SWN M+ GY RN  + +
Sbjct: 59  MPLRNSVSY-----NAMISGYLRNAKFSLARDLFDKMPHKDLFSWNLMLTGYARNRRLRD 113

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
              LFD MP+++ VSWN++L G VR G VD+A  VF++MP ++ +SW  L++ + ++GR 
Sbjct: 114 ARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRL 173

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
           +EA  LF      +L   +     L+    +   L     ++  I  +    D I    +
Sbjct: 174 EEARRLFESKSDWELISCNC----LMGGYVKRNMLGDARQLFDQIPVR----DLISWNTM 225

Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           I  YA+ G +  A ++F     +DV  +T+ ++    +G   EA  +F+ M  K      
Sbjct: 226 ISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEMPQK----RE 281

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
           +SY  +++  +    ++ G   F  M       P +  +  M+    + G L +A N   
Sbjct: 282 MSYNVMIAGYAQYKRMDMGRELFEEM-----PFPNIGSWNIMISGYCQNGDLAQARNLFD 336

Query: 301 SMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIE 336
            MP + D+V W  ++     +    + +   NML+E
Sbjct: 337 MMPQR-DSVSWAAIIAG---YAQNGLYEEAMNMLVE 368



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 142/293 (48%), Gaps = 18/293 (6%)

Query: 38  DDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFN 97
           +D   V     I+ ++RNG     L +FD MP RN VS+N+++ G +R      A  +F+
Sbjct: 29  EDPHTVKCTKAISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFD 88

Query: 98  QMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDY 157
           +MP + L SW ++++G+A+N R ++A  LF  M   D+   +A    +LS   + G +D 
Sbjct: 89  KMPHKDLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNA----MLSGYVRSGHVDE 144

Query: 158 GNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAM 217
              V+  +  K    +SI    L+  Y + G ++ A ++F S  D ++ +    + G   
Sbjct: 145 ARDVFDRMPHK----NSISWNGLLAAYVRSGRLEEARRLFESKSDWELISCNCLMGGYVK 200

Query: 218 NGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELD 277
                +A +LF+ +  +    D IS+  ++S  +  G + +       +F+   ++ ++ 
Sbjct: 201 RNMLGDARQLFDQIPVR----DLISWNTMISGYAQDGDLSQA----RRLFEESPVR-DVF 251

Query: 278 HYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
            +  MV    + G+L+EA      MP K + + +  ++     ++  +MG+ +
Sbjct: 252 TWTAMVYAYVQDGMLDEARRVFDEMPQKRE-MSYNVMIAGYAQYKRMDMGREL 303



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 12/166 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VV+  +     V N+L+  Y  CG + +A  VF      D+VSWN+M+ GY R+G   + 
Sbjct: 404 VVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQA 463

Query: 62  LKLFDKM----PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLIS 112
           L +F+ M     + ++++   +L      G  D     F+ M K   ++     +  +I 
Sbjct: 464 LTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMID 523

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
              + G  +EA  L R M     EP++A   +LL A    G ++ G
Sbjct: 524 LLGRAGCLEEAQNLIRNMP---FEPDAATWGALLGASRIHGNMELG 566


>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
 gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
 gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 643

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/511 (42%), Positives = 320/511 (62%), Gaps = 2/511 (0%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +K+     +FV  +LI  Y  CG V  AR VFDE    ++V+WN++I    R  ++    
Sbjct: 133 LKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDVAGAR 192

Query: 63  KLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKE 122
           ++FDKM  RN  SWN +L G ++ G ++ A R+F++MP R  VSW  +I G A NG   E
Sbjct: 193 EIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNE 252

Query: 123 ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182
           +   FRE+Q   + PN   L  +LSAC+Q G+ ++G  ++ +++K        +  ALID
Sbjct: 253 SFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALID 312

Query: 183 MYAKCGSIDLAMQVFHSYGDKD-VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
           MY++CG++ +A  VF    +K  + ++TS I GLAM+G   EA  LF  M + G++PD I
Sbjct: 313 MYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGI 372

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
           S+I++L ACSH G +E+G  YF  M  V+ I+PE++HY CMVDL GR+G L++A +FI  
Sbjct: 373 SFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQ 432

Query: 302 MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361
           MP+ P  ++W TLLGAC  H N E+ +++   L E D N+ G  +LLSN Y    K ++ 
Sbjct: 433 MPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAGKWKDV 492

Query: 362 EEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKN-YGY 420
             +RK+M  ++IK+    SL+E+   +++F AG++      E ++  +EI+ ++K+  GY
Sbjct: 493 ASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEIILRLKDEAGY 552

Query: 421 NVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKL 480
             E  S ++D+EEEEKE  +  HSEKLALAF L     G+ IRIVKN+RIC DCH+ MKL
Sbjct: 553 TPEVASALYDVEEEEKEDQVSKHSEKLALAFALARLSKGANIRIVKNLRICRDCHAVMKL 612

Query: 481 VSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            SKV+  +I +RDR  +H F+DGSCSC +YW
Sbjct: 613 TSKVYGVEILVRDRNRFHSFKDGSCSCRDYW 643



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 85/170 (50%), Gaps = 13/170 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLD-VVSWNSMINGYVRNGEILE 60
           V K  +++ V V N+LI  YS CG V  AR VF+   +   +VSW SMI G   +G+  E
Sbjct: 295 VEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEE 354

Query: 61  GLKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPK-----RSLVSWVVLI 111
            ++LF++M       + +S+ S+L      G +++    F++M +       +  +  ++
Sbjct: 355 AVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMV 414

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161
             + ++G+ ++A     +M    + P + +  +LL AC+  G ++    V
Sbjct: 415 DLYGRSGKLQKAYDFICQMP---IPPTAIVWRTLLGACSSHGNIELAEQV 461



 Score = 46.2 bits (108), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 50/243 (20%), Positives = 96/243 (39%), Gaps = 17/243 (6%)

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE-PNSAILVSLLSACA 150
           A R+    P+     +  L+ G++++  P  ++A+F EM       P+S     ++ A  
Sbjct: 58  ARRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVE 117

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
              +L  G  ++    K  ++    +   LI MY  CG ++ A +VF      ++ A+ +
Sbjct: 118 NFRSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNA 177

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I           A E+F+ M    +  +  S+  +L+     G +E     F  M    
Sbjct: 178 VITACFRGNDVAGAREIFDKM----LVRNHTSWNVMLAGYIKAGELESAKRIFSEM---- 229

Query: 271 GIKPELD--HYACMVDLLGRAGLLEEAENFIASMP---MKPDNVIWGTLLGACRVHRNAE 325
              P  D   ++ M+  +   G   E+  +   +    M P+ V    +L AC    + E
Sbjct: 230 ---PHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFE 286

Query: 326 MGQ 328
            G+
Sbjct: 287 FGK 289


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/515 (41%), Positives = 322/515 (62%), Gaps = 5/515 (0%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +V  S    VFV N+L   Y+ CG +  ARW+FD   + +VVSWNSMI+GY++NG+    
Sbjct: 181 IVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQNGQPETC 240

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQN 117
            KLF +M       + V+ ++IL    + G +D+AC+ F ++ ++  V W  ++ G AQN
Sbjct: 241 TKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEACKTFREIKEKDKVCWTTMMVGCAQN 300

Query: 118 GRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILC 177
           G+ ++AL LFREM   ++ P++  + S++S+CA+L +L  G  V+       +  D ++ 
Sbjct: 301 GKEEDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQGQAVHGKAVIFGVDHDLLVS 360

Query: 178 AALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGIS 237
           +AL+DMY+KCG    A  VF     ++V ++ S I G A NG  +EA  L+E M  + + 
Sbjct: 361 SALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILGYAQNGKDLEALALYEEMLHENLK 420

Query: 238 PDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAEN 297
           PD+I+++ VLSAC H G VE+G  YF+S+  +HG+ P  DHY+CM++LLGRAG +++A +
Sbjct: 421 PDNITFVGVLSACMHAGLVERGQGYFYSISKIHGMNPTFDHYSCMINLLGRAGYMDKAVD 480

Query: 298 FIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLK 357
            I SM  +P+ +IW TLL  CR++ +   G+     L E D ++ G YI+LSNIY    +
Sbjct: 481 LIKSMTFEPNCLIWSTLLSVCRINCDVNNGEMAARHLFELDPHNAGPYIMLSNIYAACGR 540

Query: 358 GENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKN 417
            ++   VR  M+  KIK+    S IE+D  VH+F+A DR+H +T++IY+    ++KK++ 
Sbjct: 541 WKDVAAVRSLMKNNKIKKFAAYSWIEIDNQVHKFVAEDRTHSETEQIYEELNRLIKKLQE 600

Query: 418 YGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPG-SVIRIVKNIRICSDCHS 476
            G+  +T  V+ D+ EEEK   I YHSEKLALAF LI    G + IRI+KNIR+C DCH 
Sbjct: 601 SGFTPDTNLVLHDVVEEEKFDSICYHSEKLALAFWLIKKPHGRTPIRIMKNIRVCGDCHV 660

Query: 477 AMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            MK VSK+ +R I +RD   +HHF +G CSC + W
Sbjct: 661 FMKFVSKIIRRPIILRDINRFHHFIEGRCSCKDSW 695



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/342 (28%), Positives = 164/342 (47%), Gaps = 19/342 (5%)

Query: 41  DVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMP 100
           D    N +++ Y ++G + +   LFDKM +R+  SWN++L    + G+V+D   VF+QM 
Sbjct: 57  DTFLQNRLLHLYAKSGNLSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQMS 116

Query: 101 KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNW 160
               VS+  +I+GF+ NG   +AL  F  MQ    E      VS+L AC+QL  +  G  
Sbjct: 117 VHDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRGKQ 176

Query: 161 VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGH 220
           ++  I    +     +  AL +MYAKCG++D A  +F    +K+V ++ S I G   NG 
Sbjct: 177 IHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQNGQ 236

Query: 221 SIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA 280
                +LF  M+S G+ PD ++   +LSA    G++++    F  +        E D   
Sbjct: 237 PETCTKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEACKTFREI-------KEKDKVC 289

Query: 281 CMVDLLGRA--GLLEEAENFIASMPM---KPDNVIWGTLLGACRVHRNAEMGQRIGNMLI 335
               ++G A  G  E+A      M +   +PDN    +++ +C    +   GQ +    +
Sbjct: 290 WTTMMVGCAQNGKEEDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQGQAVHGKAV 349

Query: 336 ESDQNHDGRYILLSNIYVETLK--GENAEE--VRKTMRKRKI 373
               +HD   +L+S+  V+     GE A+   V K M  R +
Sbjct: 350 IFGVDHD---LLVSSALVDMYSKCGETADAWIVFKRMLTRNV 388


>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Glycine max]
          Length = 629

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 207/511 (40%), Positives = 310/511 (60%), Gaps = 31/511 (6%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V+K+    D  +   L++ Y  CG + DAR                             
Sbjct: 150 LVLKSGLGLDRSIALKLVELYGKCGVLEDAR----------------------------- 180

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
             K+FD MP+R+ V+   ++G     G V++A  VFN+M  R  V W ++I G  +NG  
Sbjct: 181 --KMFDGMPERDVVACTVMIGSCFDCGMVEEAIEVFNEMGTRDTVCWTMVIDGLVRNGEF 238

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
              L +FREMQ   +EPN    V +LSACAQLGAL+ G W+++Y++K  ++++  +  AL
Sbjct: 239 NRGLEVFREMQVKGVEPNEVTFVCVLSACAQLGALELGRWIHAYMRKCGVEVNRFVAGAL 298

Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           I+MY++CG ID A  +F     KDVS Y S I GLA++G SIEA ELF  M  + + P+ 
Sbjct: 299 INMYSRCGDIDEAQALFDGVRVKDVSTYNSMIGGLALHGKSIEAVELFSEMLKERVRPNG 358

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
           I+++ VL+ACSH G V+ G   F SM  +HGI+PE++HY CMVD+LGR G LEEA +FI 
Sbjct: 359 ITFVGVLNACSHGGLVDLGGEIFESMEMIHGIEPEVEHYGCMVDILGRVGRLEEAFDFIG 418

Query: 301 SMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGEN 360
            M ++ D+ +  +LL AC++H+N  MG+++  +L E  +   G +I+LSN Y    +   
Sbjct: 419 RMGVEADDKMLCSLLSACKIHKNIGMGEKVAKLLSEHYRIDSGSFIMLSNFYASLGRWSY 478

Query: 361 AEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGY 420
           A EVR+ M K  I + PGCS IE++  +HEF +GD  H + + IY+  EE+    K  GY
Sbjct: 479 AAEVREKMEKGGIIKEPGCSSIEVNNAIHEFFSGDLRHPERKRIYKKLEELNYLTKFEGY 538

Query: 421 NVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKL 480
              T   + DI++E+KE  +  HSE+LA+ +GL+ T+  + +R+ KN+RIC DCH+ +KL
Sbjct: 539 LPATEVALHDIDDEQKELALAVHSERLAICYGLVSTEAYTTLRVGKNLRICDDCHAMIKL 598

Query: 481 VSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           ++K+ +RKI +RDR  +HHFE+G CSC +YW
Sbjct: 599 IAKITRRKIVVRDRNRFHHFENGECSCKDYW 629



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 133/274 (48%), Gaps = 10/274 (3%)

Query: 52  YVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLI 111
           Y +   I   +KLF      N   + S++ G V FGS  DA  +F QM ++ +++    +
Sbjct: 69  YCKVNYIDHAIKLFRCTQNPNVYLYTSLIDGFVSFGSYTDAINLFCQMVRKHVLADNYAV 128

Query: 112 SGFAQNGRPKEALALFREMQSLDLEP----NSAILVSLLSACAQLGALDYGNWVYSYIQK 167
           +   +    + AL   +E+  L L+     + +I + L+    + G L+    ++  + +
Sbjct: 129 TAMLKACVLQRALGSGKEVHGLVLKSGLGLDRSIALKLVELYGKCGVLEDARKMFDGMPE 188

Query: 168 KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFEL 227
           +    D + C  +I     CG ++ A++VF+  G +D   +T  I GL  NG      E+
Sbjct: 189 R----DVVACTVMIGSCFDCGMVEEAIEVFNEMGTRDTVCWTMVIDGLVRNGEFNRGLEV 244

Query: 228 FENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLG 287
           F  M+ KG+ P+ ++++ VLSAC+ LG +E G  + H+     G++        ++++  
Sbjct: 245 FREMQVKGVEPNEVTFVCVLSACAQLGALELG-RWIHAYMRKCGVEVNRFVAGALINMYS 303

Query: 288 RAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           R G ++EA+     + +K D   + +++G   +H
Sbjct: 304 RCGDIDEAQALFDGVRVK-DVSTYNSMIGGLALH 336



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 2/146 (1%)

Query: 173 DSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMK 232
           D  +   L+ +Y K   ID A+++F    + +V  YTS I G    G   +A  LF  M 
Sbjct: 58  DPFVAFELLRVYCKVNYIDHAIKLFRCTQNPNVYLYTSLIDGFVSFGSYTDAINLFCQMV 117

Query: 233 SKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLL 292
            K +  D+ +  A+L AC     +  G    H +    G+  +      +V+L G+ G+L
Sbjct: 118 RKHVLADNYAVTAMLKACVLQRALGSG-KEVHGLVLKSGLGLDRSIALKLVELYGKCGVL 176

Query: 293 EEAENFIASMPMKPDNVIWGTLLGAC 318
           E+A      MP + D V    ++G+C
Sbjct: 177 EDARKMFDGMPER-DVVACTVMIGSC 201


>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 742

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 196/466 (42%), Positives = 312/466 (66%), Gaps = 1/466 (0%)

Query: 47  SMINGYVRNGEILEGLKLFDKMPQ-RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           ++I+ Y + G+I    ++FD + + R   SWN+++ G  + G VD A  +F+QM  R LV
Sbjct: 277 ALIDMYAKCGDIGRAWEVFDALGRGRRPQSWNAMIDGYCKLGHVDVARYLFDQMEDRDLV 336

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           ++  LI+G+   GR +EAL LF +M+  DL  ++  +VSLL+ACA LGAL  G  +++ I
Sbjct: 337 TFNSLITGYIHGGRLREALLLFMQMRRHDLRADNFTMVSLLTACASLGALPQGRALHACI 396

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
           +++ +++D  L  AL+DMY KCG ++ A  VF +   +DV  +++ I GLA NG    A 
Sbjct: 397 EQRLVEVDIYLGTALLDMYLKCGRVEEASLVFQAMSVRDVHTWSAMIAGLAFNGMGKAAL 456

Query: 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL 285
           E F  MK  G  P+S++YIA+L+ACSH   +++G  YF  M  +H I+P ++HY CM+DL
Sbjct: 457 EYFFWMKVDGFQPNSVTYIAILTACSHSCLLDEGRLYFEEMRLLHNIRPLIEHYGCMIDL 516

Query: 286 LGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRY 345
           LGR+GLL+EA + + +MPM+P+ VIW ++L ACRVH++A + +     L++ + + D  Y
Sbjct: 517 LGRSGLLDEAMDLVRTMPMQPNAVIWASILSACRVHKDANLARNAAEHLLKLEPDEDAVY 576

Query: 346 ILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIY 405
           + L NIY+++ + E+A ++R+ M +R +K+A G S I + G VH+F+  DR+H +  EI 
Sbjct: 577 VQLYNIYIDSRQWEDASQIRRLMEERGVKKAAGYSSITVAGQVHKFIVCDRTHPQIMEIT 636

Query: 406 QFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIV 465
              EEI +++K+ GY+  T  +  D++EEEKE  +  HSEK+A+AFGLI   P   + I+
Sbjct: 637 AMMEEITRRLKSVGYSPITSQITVDVDEEEKEHALLAHSEKIAIAFGLISLAPNLPLHII 696

Query: 466 KNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           KN+R+C DCHSA+KL+S+++ R+I +RDR  +HHF DG+CSC ++W
Sbjct: 697 KNLRVCEDCHSAIKLISRIWNREIIVRDRSRFHHFRDGTCSCNDFW 742



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 151/303 (49%), Gaps = 34/303 (11%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N +I+ YV  G   +  + FD +P ++ V+W +++ GL + G +DDA  +    P R+++
Sbjct: 144 NPIIHMYVELGLAGDARRAFDDIPVKDAVAWTTVISGLAKLGLLDDAWCLLRHSPARNVI 203

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           SW  LISG+++ GR  EA+  F  M S  +EP+   ++ LLSACAQL  L +G  ++  +
Sbjct: 204 SWTGLISGYSRAGRAAEAVDCFNSMLSDGIEPDEVTVIGLLSACAQLKDLVFGRSLHKLV 263

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG------------------------ 201
            +K + +   L  ALIDMYAKCG I  A +VF + G                        
Sbjct: 264 GEKGMLMSGKLVVALIDMYAKCGDIGRAWEVFDALGRGRRPQSWNAMIDGYCKLGHVDVA 323

Query: 202 --------DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL 253
                   D+D+  + S I G    G   EA  LF  M+   +  D+ + +++L+AC+ L
Sbjct: 324 RYLFDQMEDRDLVTFNSLITGYIHGGRLREALLLFMQMRRHDLRADNFTMVSLLTACASL 383

Query: 254 GWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGT 313
           G + +G    H+  +   ++ ++     ++D+  + G +EEA     +M ++ D   W  
Sbjct: 384 GALPQG-RALHACIEQRLVEVDIYLGTALLDMYLKCGRVEEASLVFQAMSVR-DVHTWSA 441

Query: 314 LLG 316
           ++ 
Sbjct: 442 MIA 444



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 94/199 (47%), Gaps = 9/199 (4%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWN----SMINGYVRNGEILEGLKLF 65
           D+   NSLI  Y   GR+R+A  +F +    D+ + N    S++      G + +G  L 
Sbjct: 334 DLVTFNSLITGYIHGGRLREALLLFMQMRRHDLRADNFTMVSLLTACASLGALPQGRALH 393

Query: 66  DKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
             + QR    +     ++L   ++ G V++A  VF  M  R + +W  +I+G A NG  K
Sbjct: 394 ACIEQRLVEVDIYLGTALLDMYLKCGRVEEASLVFQAMSVRDVHTWSAMIAGLAFNGMGK 453

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQ-KKCIKLDSILCAAL 180
            AL  F  M+    +PNS   +++L+AC+    LD G   +  ++    I+        +
Sbjct: 454 AALEYFFWMKVDGFQPNSVTYIAILTACSHSCLLDEGRLYFEEMRLLHNIRPLIEHYGCM 513

Query: 181 IDMYAKCGSIDLAMQVFHS 199
           ID+  + G +D AM +  +
Sbjct: 514 IDLLGRSGLLDEAMDLVRT 532



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 12/149 (8%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D+++  +L+  Y  CGRV +A  VF      DV +W++MI G   NG     L+ F  M 
Sbjct: 404 DIYLGTALLDMYLKCGRVEEASLVFQAMSVRDVHTWSAMIAGLAFNGMGKAALEYFFWMK 463

Query: 70  ----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPK----RSLVS-WVVLISGFAQNGRP 120
               Q N V++ +IL        +D+    F +M      R L+  +  +I    ++G  
Sbjct: 464 VDGFQPNSVTYIAILTACSHSCLLDEGRLYFEEMRLLHNIRPLIEHYGCMIDLLGRSGLL 523

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSAC 149
            EA+ L R M    ++PN+ I  S+LSAC
Sbjct: 524 DEAMDLVRTMP---MQPNAVIWASILSAC 549



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 78/195 (40%), Gaps = 39/195 (20%)

Query: 95  VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA 154
           +F++MP  + +    L + F  +  P+  L L+R M+   +  ++     L   CA+  A
Sbjct: 59  LFDRMPCSTFLFDTALRACFRASSGPESPLILYRRMRRTGVCTDAFTFHFLFKCCARGRA 118

Query: 155 LDYGNWVYSYIQKKCIK--LDS---ILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYT 209
                 +   +   C +  L S   ++   +I MY + G    A + F     KD  A+T
Sbjct: 119 ---HVLLCQMLHAACFRTMLPSAVPLVSNPIIHMYVELGLAGDARRAFDDIPVKDAVAWT 175

Query: 210 SAIFGLA-------------------------------MNGHSIEAFELFENMKSKGISP 238
           + I GLA                                 G + EA + F +M S GI P
Sbjct: 176 TVISGLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIEP 235

Query: 239 DSISYIAVLSACSHL 253
           D ++ I +LSAC+ L
Sbjct: 236 DEVTVIGLLSACAQL 250


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/534 (40%), Positives = 321/534 (60%), Gaps = 32/534 (5%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DV  + ++I  Y   GR+ +AR +FDE    +VVSW +MI GYV+N ++    KLF+ MP
Sbjct: 252 DVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMP 311

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGR-PK------- 121
           ++N+VSW ++L G    G +D+A  +FN MP +S+V+   +I  F QNG  PK       
Sbjct: 312 EKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQ 371

Query: 122 -----------------------EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
                                  +AL LFR MQ   + PN   L+S+LS CA L  LD+G
Sbjct: 372 MREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHG 431

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
             +++ + +    LD  + + L+ MY KCG++  A QVF  +  KDV  + S I G A +
Sbjct: 432 REIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQH 491

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDH 278
           G  +EA  +F +M   GI PD ++++ VLSACS+ G V+KG   F+SM   + ++ +++H
Sbjct: 492 GLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEH 551

Query: 279 YACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338
           YACMVDLLGRAG L EA + I  MPM+ D +IWG LLGACR H   ++ +     L+  +
Sbjct: 552 YACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLE 611

Query: 339 QNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRS- 397
             + G +ILLSNIY    + ++  E+R+ MR R++ + PGCS I ++  VH+F  GD S 
Sbjct: 612 PKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGDSSG 671

Query: 398 HEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTK 457
           H +  EI +  E +   ++  GY  +   V+ D++EEEK   + YHSEKLA+A+GL+   
Sbjct: 672 HPEHSEINRILEWLSGLLREAGYYPDQSFVLHDVDEEEKVQSLEYHSEKLAVAYGLLKIP 731

Query: 458 PGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            G  IR++KN+R+C DCH+A+KL++KV  R+I +RD   +HHF+DGSCSC +YW
Sbjct: 732 IGMPIRVMKNLRVCGDCHAAIKLIAKVTGREIILRDANRFHHFKDGSCSCRDYW 785



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 158/318 (49%), Gaps = 24/318 (7%)

Query: 2   VVKNSFAYDVFV--KNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEIL 59
           +V N F    F+  +NSLI  YS  G++  AR VFDE  D +++SWNS++ GY +N    
Sbjct: 87  LVLNRFYCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQ 146

Query: 60  EGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGR 119
           E   +FDKM +RN +SWN ++ G +  G +++A  VF++MP+R++VSW  ++ G+ + G 
Sbjct: 147 EAQNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGM 206

Query: 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
             EA  LF +M     E N      +L    Q G +D    ++  + +K    D +    
Sbjct: 207 ISEAETLFWQMP----EKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEK----DVVTRTN 258

Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
           +I  Y + G +  A  +F     ++V ++T+ I G   N     A +LFE M  K    +
Sbjct: 259 MIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEK----N 314

Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYAC--MVDLLGRAGLLEEAEN 297
            +S+ A+L   ++ G +++    F++M       P     AC  M+   G+ G + +A  
Sbjct: 315 EVSWTAMLKGYTNCGRLDEASELFNAM-------PIKSVVACNAMILCFGQNGEVPKARQ 367

Query: 298 FIASMPMKPDNVIWGTLL 315
               M  K D   W  ++
Sbjct: 368 VFDQMREK-DEGTWSAMI 384



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 101/219 (46%), Gaps = 19/219 (8%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +V++ F  DV+V + L+  Y  CG +  A+ VFD     DVV WNS+I GY ++G  +E 
Sbjct: 438 LVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEA 497

Query: 62  LKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLIS 112
           L++F  M       +DV++  +L      G+V     +FN M  +  V      +  ++ 
Sbjct: 498 LRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVD 557

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKL 172
              + G+  EA+ L  +M    +E ++ I  +LL AC     LD          KK + L
Sbjct: 558 LLGRAGKLNEAMDLIEKM---PMEADAIIWGALLGACRTHMKLDLA----EVAAKKLLVL 610

Query: 173 DSILCAALI---DMYAKCGSIDLAMQVFHSYGDKDVSAY 208
           +       I   ++YA  G  D   ++  +  D+ VS Y
Sbjct: 611 EPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKY 649


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/534 (40%), Positives = 321/534 (60%), Gaps = 32/534 (5%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DV  + ++I  Y   GR+ +AR +FDE    +VVSW +MI GYV+N ++    KLF+ MP
Sbjct: 252 DVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMP 311

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGR-PK------- 121
           ++N+VSW ++L G    G +D+A  +FN MP +S+V+   +I  F QNG  PK       
Sbjct: 312 EKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQ 371

Query: 122 -----------------------EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
                                  +AL LFR MQ   + PN   L+S+LS CA L  LD+G
Sbjct: 372 MREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHG 431

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
             +++ + +    LD  + + L+ MY KCG++  A QVF  +  KDV  + S I G A +
Sbjct: 432 REIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQH 491

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDH 278
           G  +EA  +F +M   GI PD ++++ VLSACS+ G V+KG   F+SM   + ++ +++H
Sbjct: 492 GLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEH 551

Query: 279 YACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338
           YACMVDLLGRAG L EA + I  MPM+ D +IWG LLGACR H   ++ +     L+  +
Sbjct: 552 YACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLE 611

Query: 339 QNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRS- 397
             + G +ILLSNIY    + ++  E+R+ MR R++ + PGCS I ++  VH+F  GD S 
Sbjct: 612 PKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGDSSG 671

Query: 398 HEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTK 457
           H +  EI +  E +   ++  GY  +   V+ D++EEEK   + YHSEKLA+A+GL+   
Sbjct: 672 HPEHSEINRILEWLSGLLREAGYYPDQSFVLHDVDEEEKVQSLEYHSEKLAVAYGLLKIP 731

Query: 458 PGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            G  IR++KN+R+C DCH+A+KL++KV  R+I +RD   +HHF+DGSCSC +YW
Sbjct: 732 IGMPIRVMKNLRVCGDCHAAIKLIAKVTGREIILRDANRFHHFKDGSCSCRDYW 785



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 158/318 (49%), Gaps = 24/318 (7%)

Query: 2   VVKNSFAYDVFV--KNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEIL 59
           +V N F    F+  +NSLI  YS  G++  AR VFDE  D +++SWNS++ GY +N    
Sbjct: 87  LVLNRFYCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQ 146

Query: 60  EGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGR 119
           E   +FDKM +RN +SWN ++ G +  G +++A  VF++MP+R++VSW  ++ G+ + G 
Sbjct: 147 EAQNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGM 206

Query: 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
             EA  LF +M     E N      +L    Q G +D    ++  + +K    D +    
Sbjct: 207 ISEAETLFWQMP----EKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEK----DVVTRTN 258

Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
           +I  Y + G +  A  +F     ++V ++T+ I G   N     A +LFE M  K    +
Sbjct: 259 MIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEK----N 314

Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYAC--MVDLLGRAGLLEEAEN 297
            +S+ A+L   ++ G +++    F++M       P     AC  M+   G+ G + +A  
Sbjct: 315 EVSWTAMLKGYTNCGRLDEASELFNAM-------PIKSVVACNAMILCFGQNGEVPKARQ 367

Query: 298 FIASMPMKPDNVIWGTLL 315
               M  K D   W  ++
Sbjct: 368 VFDQMREK-DEGTWSAMI 384



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 101/219 (46%), Gaps = 19/219 (8%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +V++ F  DV+V + L+  Y  CG +  A+ VFD     DVV WNS+I GY ++G  +E 
Sbjct: 438 LVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEA 497

Query: 62  LKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLIS 112
           L++F  M       +DV++  +L      G+V     +FN M  +  V      +  ++ 
Sbjct: 498 LRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVD 557

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKL 172
              + G+  EA+ L  +M    +E ++ I  +LL AC     LD          KK + L
Sbjct: 558 LLGRAGKLNEAMDLIEKM---PMEADAIIWGALLGACRTHMKLDLA----EVAAKKLLVL 610

Query: 173 DSILCAALI---DMYAKCGSIDLAMQVFHSYGDKDVSAY 208
           +       I   ++YA  G  D   ++  +  D+ VS Y
Sbjct: 611 EPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKY 649


>gi|326520445|dbj|BAK07481.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 596

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/478 (44%), Positives = 308/478 (64%), Gaps = 7/478 (1%)

Query: 41  DVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRF----GSVDDACRVF 96
           D  ++  ++    R   + EG  L  +  +   V+   +   LV      G  + A RVF
Sbjct: 119 DTHTYPPLLQACTRLLALREGESLHAEAAKNGLVALVFVKNSLVHHYGACGLFESAHRVF 178

Query: 97  NQMP--KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA 154
           +++P  +R+LVSW  +++GFA NGRP E L +FRE    DL P+   +VS+L+ACA++GA
Sbjct: 179 DEIPVLERNLVSWNSVMNGFAANGRPNEVLTIFRETLEADLMPDGFTIVSVLTACAEIGA 238

Query: 155 LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG-DKDVSAYTSAIF 213
           L  G  V+ +  K  +  +S +  ALID+YAKCG ++ A +VF   G  + V ++TS I 
Sbjct: 239 LTLGRRVHVFASKVGLVGNSHVGNALIDLYAKCGGVEDAWKVFEEMGVARTVVSWTSLIV 298

Query: 214 GLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIK 273
           GLA NG   +A ELF  M+ + + P  I+ + VL ACSH G V+ GF YF+ M D +GI 
Sbjct: 299 GLAGNGFGKDALELFGLMERERLIPTDITMVGVLYACSHCGLVDDGFRYFNEMQDKYGIA 358

Query: 274 PELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNM 333
           P ++H  CMVDLLGRAG +EEA N+I +MP++P+ V+W TLLGAC +H+  E+G+     
Sbjct: 359 PGIEHLGCMVDLLGRAGRVEEAHNYITTMPVEPNAVVWRTLLGACAMHKKLELGEAAWAR 418

Query: 334 LIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLA 393
           L+E D  H G Y+LLSN+Y    +  +A  +RKTM    +++ PG SL+EL   V+EF+ 
Sbjct: 419 LVELDPGHSGDYVLLSNLYAAVGRWADAHVLRKTMATHGVRKNPGHSLVELRNSVYEFVM 478

Query: 394 GDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGL 453
           GDRSH ++ +IYQ   EI ++++  GY   T +V+ DIEEEEKET + YHSE+LA+AF L
Sbjct: 479 GDRSHPESDQIYQTLAEIAERLRCQGYVPRTSNVLADIEEEEKETALNYHSERLAIAFAL 538

Query: 454 ICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           + + PGS IRIVKN+R+C DCH  +KL+SKV+ R+I +RDR  +HHF+ G CSC +YW
Sbjct: 539 LKSLPGSPIRIVKNLRMCGDCHLVIKLISKVYDREIIVRDRSRFHHFKGGECSCKDYW 596



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 107/235 (45%), Gaps = 47/235 (20%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLD--VVSWNSMINGYVRNGEILEG 61
           KN     VFVKNSL+  Y  CG    A  VFDE   L+  +VSWNS++NG+  NG   E 
Sbjct: 148 KNGLVALVFVKNSLVHHYGACGLFESAHRVFDEIPVLERNLVSWNSVMNGFAANGRPNEV 207

Query: 62  LKLF------DKMPQ---------------------------------RNDVSWNSILGG 82
           L +F      D MP                                   N    N+++  
Sbjct: 208 LTIFRETLEADLMPDGFTIVSVLTACAEIGALTLGRRVHVFASKVGLVGNSHVGNALIDL 267

Query: 83  LVRFGSVDDACRVFNQMP-KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
             + G V+DA +VF +M   R++VSW  LI G A NG  K+AL LF  M+   L P    
Sbjct: 268 YAKCGGVEDAWKVFEEMGVARTVVSWTSLIVGLAGNGFGKDALELFGLMERERLIPTDIT 327

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKK---CIKLDSILCAALIDMYAKCGSIDLA 193
           +V +L AC+  G +D G   ++ +Q K      ++ + C  ++D+  + G ++ A
Sbjct: 328 MVGVLYACSHCGLVDDGFRYFNEMQDKYGIAPGIEHLGC--MVDLLGRAGRVEEA 380



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 93/206 (45%), Gaps = 12/206 (5%)

Query: 115 AQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDS 174
           A +  P+ ALAL R   +    P++     LL AC +L AL  G  +++   K  +    
Sbjct: 99  ASSAHPRIALALHRRRLA---PPDTHTYPPLLQACTRLLALREGESLHAEAAKNGLVALV 155

Query: 175 ILCAALIDMYAKCGSIDLAMQVFHSYG--DKDVSAYTSAIFGLAMNGHSIEAFELFENMK 232
            +  +L+  Y  CG  + A +VF      ++++ ++ S + G A NG   E   +F    
Sbjct: 156 FVKNSLVHHYGACGLFESAHRVFDEIPVLERNLVSWNSVMNGFAANGRPNEVLTIFRETL 215

Query: 233 SKGISPDSISYIAVLSACSHLGWVEKG--FYYFHSMFDVHGIKPELDHYA-CMVDLLGRA 289
              + PD  + ++VL+AC+ +G +  G   + F S   + G      H    ++DL  + 
Sbjct: 216 EADLMPDGFTIVSVLTACAEIGALTLGRRVHVFASKVGLVGN----SHVGNALIDLYAKC 271

Query: 290 GLLEEAENFIASMPMKPDNVIWGTLL 315
           G +E+A      M +    V W +L+
Sbjct: 272 GGVEDAWKVFEEMGVARTVVSWTSLI 297


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/517 (41%), Positives = 323/517 (62%), Gaps = 10/517 (1%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           K  F ++VFV  SLI  YS  G    AR +FD+    D+ SWN+MI+G ++NG   + L 
Sbjct: 143 KLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALD 202

Query: 64  LFDKMP----QRNDVSWNSILGGLV----RFGSVDDACRVFNQMPKRSLVSWVVLISGFA 115
           + D+M     + N V+  SIL   V    + G +D A +VF  +P + ++SW  LI+G+A
Sbjct: 203 VLDEMRLEGIKMNFVTVVSILPVFVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYA 262

Query: 116 QNGRPKEALALFREMQSL-DLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDS 174
           QNG   EA+ +++ M+   ++ PN    VS+L A A +GAL  G  ++  + K  + LD 
Sbjct: 263 QNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDV 322

Query: 175 ILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK 234
            +   LID+Y KCG +  AM +F+    +    + + I    ++GH+ +  +LF  M  +
Sbjct: 323 FVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDE 382

Query: 235 GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEE 294
           G+ PD ++++++LSACSH G+VE+G + F  M + +GIKP L HY CMVDLLGRAG LE 
Sbjct: 383 GVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQE-YGIKPSLKHYGCMVDLLGRAGYLEM 441

Query: 295 AENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVE 354
           A +FI  MP++PD  IWG LLGACR+H N E+G+   + L E D  + G Y+LLSNIY  
Sbjct: 442 AYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYAN 501

Query: 355 TLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKK 414
             K E  ++VR   R+R +K+ PG S IE++  V  F  G++SH K +EIY+    +  K
Sbjct: 502 VGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAK 561

Query: 415 IKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDC 474
           +K+ GY  +   V+ D+EE+EKE ++  HSE+LA+AFG+I T P S IRI KN+R+C DC
Sbjct: 562 MKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDC 621

Query: 475 HSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           H+A K +S++ +R+I +RD   +HHF+DG CSC +YW
Sbjct: 622 HNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 658



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/371 (26%), Positives = 166/371 (44%), Gaps = 84/371 (22%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ 70
           +F+   L+  Y+  G V  +R  FD+    DV +WNSMI+ YV NG   E +  F ++  
Sbjct: 51  IFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLL 110

Query: 71  RNDV--------------------------------SWN-----SILGGLVRFGSVDDAC 93
            +++                                 WN     S++    RFG    A 
Sbjct: 111 VSEIRPDFYTFPPVLKACGTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIAR 170

Query: 94  RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153
            +F+ MP R + SW  +ISG  QNG   +AL +  EM+   ++ N   +VS+L       
Sbjct: 171 SLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSIL------- 223

Query: 154 ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIF 213
                                      +DMYAK G +D A +VF     KDV ++ + I 
Sbjct: 224 ------------------------PVFVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLIT 259

Query: 214 GLAMNGHSIEAFELFENMKS-KGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG- 271
           G A NG + EA E+++ M+  K I P+  +++++L A +H+G +++G         +HG 
Sbjct: 260 GYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQG-------MKIHGR 312

Query: 272 -IKP--ELDHY--ACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEM 326
            IK    LD +   C++D+ G+ G L +A +    +P +  +V W  ++    +H +AE 
Sbjct: 313 VIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQE-SSVTWNAIISCHGIHGHAEK 371

Query: 327 GQRI-GNMLIE 336
             ++ G ML E
Sbjct: 372 TLKLFGEMLDE 382



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 125/307 (40%), Gaps = 74/307 (24%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +K +F   V +    +  Y+  G +  A  VF+     DV+SWN++I GY +NG   E +
Sbjct: 212 IKMNFVTVVSILPVFVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAI 271

Query: 63  KLFDKMPQ-----RNDVSWNSILGGLVRFGSVD--------------------------- 90
           +++  M +      N  +W SIL      G++                            
Sbjct: 272 EVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDV 331

Query: 91  --------DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
                   DA  +F Q+P+ S V+W  +IS    +G  ++ L LF EM    ++P+    
Sbjct: 332 YGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTF 391

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           VSLLSAC+  G ++ G W +  +Q+  IK        ++D+  + G +++A         
Sbjct: 392 VSLLSACSHSGFVEEGKWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMA--------- 442

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
                                    ++ +K   + PD+  + A+L AC   G +E G + 
Sbjct: 443 -------------------------YDFIKDMPLQPDASIWGALLGACRIHGNIELGKFA 477

Query: 263 FHSMFDV 269
              +F+V
Sbjct: 478 SDRLFEV 484



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 82/167 (49%), Gaps = 11/167 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K +   DVFV   LI  Y  CGR+ DA  +F +      V+WN++I+ +  +G   + 
Sbjct: 313 VIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKT 372

Query: 62  LKLFDKM----PQRNDVSWNSILGGLVRFGSVDDACRVFNQMP----KRSLVSWVVLISG 113
           LKLF +M     + + V++ S+L      G V++    F  M     K SL  +  ++  
Sbjct: 373 LKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGIKPSLKHYGCMVDL 432

Query: 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNW 160
             + G  + A    ++M    L+P+++I  +LL AC   G ++ G +
Sbjct: 433 LGRAGYLEMAYDFIKDMP---LQPDASIWGALLGACRIHGNIELGKF 476


>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
          Length = 742

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 196/466 (42%), Positives = 309/466 (66%), Gaps = 1/466 (0%)

Query: 47  SMINGYVRNGEILEGLKLFDKMPQ-RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           ++I+ Y + G+I +   +FD + + +    WN+I+ G  + G VD A  +F+QM  R ++
Sbjct: 277 ALIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNAIIDGYCKLGHVDVARSLFDQMGARDVI 336

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           ++  +I+G+  +GR ++AL LF +M+   +  ++  +VSLL+ACA LGAL +G  +++ I
Sbjct: 337 TFNSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLLTACASLGALPHGRALHASI 396

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
           +++ ++ D  L  AL+DMY KCG +D A  VFH  G++DV  +T+ I GLA NG   +A 
Sbjct: 397 EQRIVEEDVYLGTALLDMYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAFNGMGKDAL 456

Query: 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL 285
           E F  MK  G  P S++YIAVL+ACSH   +++G  +F+ M  +H + P+++HY CM+DL
Sbjct: 457 ESFCQMKRDGFQPTSVTYIAVLTACSHSSLLDEGRLHFNEMRSLHKLHPQVEHYGCMIDL 516

Query: 286 LGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRY 345
           L R+GLL+EA + + +MPM+P+ VIWG++L ACRVH+N ++ +     L++     D  Y
Sbjct: 517 LARSGLLDEAMHLVQTMPMQPNAVIWGSILSACRVHKNIDLARHAAEHLLKLAPEEDAVY 576

Query: 346 ILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIY 405
           + L NIY+++ +  +A+ VR  M +R +K+  G S I + G VH+F+A D+SH  T EI 
Sbjct: 577 VQLYNIYIDSRQWADAKRVRMLMEERGVKKTAGYSSITVAGQVHKFVANDQSHPWTLEIM 636

Query: 406 QFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIV 465
              EEI  ++K+ GY+  T  +  D++EEEKE  +  HSEK+A+AFGLI   P   I IV
Sbjct: 637 AMMEEIACRLKSVGYSPVTSRIAVDVDEEEKEQALLAHSEKIAIAFGLISLPPSLPIHIV 696

Query: 466 KNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           KN+R+C DCHSA+KLVS+++ R+I +RDR  +HHF DG+CSC ++W
Sbjct: 697 KNLRVCEDCHSAIKLVSQLWNREIIVRDRSRFHHFRDGACSCNDFW 742



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 150/289 (51%), Gaps = 33/289 (11%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N +I+ Y   G   +  + FD++P ++ V W +++GGLVR+G +D+A R+  Q P+R++V
Sbjct: 144 NPLIHMYASMGLTDDARRAFDEIPAKDAVVWATVIGGLVRWGLLDEARRLLVQAPERNVV 203

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           SW  LI+G+++ GRP +A+  F  M S  + P+   ++  LSAC++L  LD G  ++  +
Sbjct: 204 SWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGALSACSKLKNLDLGRLLHLLV 263

Query: 166 QKKCIKLDSILCAALIDMYAKCGSI--------------------------------DLA 193
            +K I++   L  ALIDMYAKCG I                                D+A
Sbjct: 264 GQKRIRMTDNLVVALIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNAIIDGYCKLGHVDVA 323

Query: 194 MQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL 253
             +F   G +DV  + S I G   +G   +A +LF  M+  G+  D+ + +++L+AC+ L
Sbjct: 324 RSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLLTACASL 383

Query: 254 GWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM 302
           G +  G    H+  +   ++ ++     ++D+  + G ++EA      M
Sbjct: 384 GALPHG-RALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEATAVFHRM 431



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 104/206 (50%), Gaps = 19/206 (9%)

Query: 8   AYDVFVKNSLIQFYSVCGRVRDARWVFDE-------SDDLDVVSWNSMINGYVRNGEILE 60
           A DV   NS+I  Y   GR+RDA  +F +       +D+  VV   S++      G +  
Sbjct: 332 ARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVV---SLLTACASLGALPH 388

Query: 61  GLKLFDKMPQR---NDVSW-NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQ 116
           G  L   + QR    DV    ++L   ++ G VD+A  VF++M +R + +W  +I+G A 
Sbjct: 389 GRALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAF 448

Query: 117 NGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYS---YIQKKCIKLD 173
           NG  K+AL  F +M+    +P S   +++L+AC+    LD G   ++    + K   +++
Sbjct: 449 NGMGKDALESFCQMKRDGFQPTSVTYIAVLTACSHSSLLDEGRLHFNEMRSLHKLHPQVE 508

Query: 174 SILCAALIDMYAKCGSIDLAMQVFHS 199
              C  +ID+ A+ G +D AM +  +
Sbjct: 509 HYGC--MIDLLARSGLLDEAMHLVQT 532



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 86/177 (48%), Gaps = 16/177 (9%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DV++  +L+  Y  CGRV +A  VF    + DV +W +MI G   NG   + L+ F +M 
Sbjct: 404 DVYLGTALLDMYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQMK 463

Query: 70  ----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-------WVVLISGFAQNG 118
               Q   V++ ++L        +D+    FN+M  RSL         +  +I   A++G
Sbjct: 464 RDGFQPTSVTYIAVLTACSHSSLLDEGRLHFNEM--RSLHKLHPQVEHYGCMIDLLARSG 521

Query: 119 RPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI 175
              EA+ L   +Q++ ++PN+ I  S+LSAC     +D       ++ K   + D++
Sbjct: 522 LLDEAMHL---VQTMPMQPNAVIWGSILSACRVHKNIDLARHAAEHLLKLAPEEDAV 575


>gi|125599128|gb|EAZ38704.1| hypothetical protein OsJ_23104 [Oryza sativa Japonica Group]
          Length = 1280

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/510 (42%), Positives = 320/510 (62%), Gaps = 8/510 (1%)

Query: 10   DVFVKNSLIQFYSVCGRVRDARWVFDESDDL-DVVSWNSMINGYVRNGEILEGLKLFDKM 68
            D F  N++++  +   R R A  +      L D  ++  +I    R   + EG  L  + 
Sbjct: 771  DPFPLNTVLRIAAGSPRPRVALELHRRRLALPDTHTYPPLIQACARLLALREGECLHAEA 830

Query: 69   PQRNDVSWNSILGGLVRF----GSVDDACRVFNQMP--KRSLVSWVVLISGFAQNGRPKE 122
             +   V+   +   LV      G  + A +VF++MP   R+LVSW  +++ FA NGRP E
Sbjct: 831  AKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNE 890

Query: 123  ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182
             L +F EM  +D  P+   +VS+L+ACA+ GAL  G  V+ Y++K  +  +S +  ALID
Sbjct: 891  VLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALID 950

Query: 183  MYAKCGSIDLAMQVFHSYG-DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
            +YAKCGS++ A ++F   G  + V ++TS I GLA NG   EA ELF  M+ + + P  I
Sbjct: 951  LYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEI 1010

Query: 242  SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
            + + VL ACSH G V+ GF YF  M + +GI P ++H  CMVDLLGRAG +EEA ++I +
Sbjct: 1011 TMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIIT 1070

Query: 302  MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361
            MP++P+ V+W TLLG+C +H+  E+G+     L+E D  H G Y+LLSN+Y       + 
Sbjct: 1071 MPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLVELDPGHSGDYVLLSNLYAAVGMWADV 1130

Query: 362  EEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYN 421
              +RKTM K ++++ PG SL+EL   V+EF+ GDRSH ++++IY+   EI ++++  GY 
Sbjct: 1131 HVLRKTMVKDRVRKNPGHSLVELRNSVYEFVMGDRSHPESEQIYEMLAEIAERLRREGYI 1190

Query: 422  VETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLV 481
              T +V+ DIEEEEKET + YHSE+LA+AF L+ + PG  IRI+KN+R+C DCH A  L+
Sbjct: 1191 PRTSNVLADIEEEEKETALNYHSERLAIAFALLKSLPGIPIRIIKNLRMCGDCHVAFNLI 1250

Query: 482  SKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            SKV+ R+I +RDR  +HHF+ G+CSC +YW
Sbjct: 1251 SKVYDREIIVRDRSRFHHFQGGACSCKDYW 1280



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 106/235 (45%), Gaps = 47/235 (20%)

Query: 4    KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESD--DLDVVSWNSMINGYVRNGEILEG 61
            KN F   VFV+NSL+  Y  CG    A  VFDE      ++VSWNSM+N +  NG   E 
Sbjct: 832  KNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEV 891

Query: 62   LKLF------DKMPQ---------------------------------RNDVSWNSILGG 82
            L +F      D  P                                   N    N+++  
Sbjct: 892  LTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDL 951

Query: 83   LVRFGSVDDACRVFNQMP-KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + GSV+DA R+F +M   R++VSW  LI G A NG  KEAL LF  M+   L P    
Sbjct: 952  YAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEIT 1011

Query: 142  LVSLLSACAQLGALDYGNWVYSYIQKK---CIKLDSILCAALIDMYAKCGSIDLA 193
            +V +L AC+  G +D G   +  +++      +++ + C  ++D+  + G ++ A
Sbjct: 1012 MVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGC--MVDLLGRAGRVEEA 1064


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/549 (37%), Positives = 332/549 (60%), Gaps = 40/549 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           + ++ F  DVFV+N L+  Y+ CG +  A  VF    D  +VSW S+I+GY +NG+ +E 
Sbjct: 199 IFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEA 258

Query: 62  LKLFDKMPQRN-DVSWNSILGGLVRFGSVDD--------ACRV----------------- 95
           L++F +M + N    W +++  L  +  V+D         C +                 
Sbjct: 259 LRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSL 318

Query: 96  -------------FNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
                        FNQ+   SL+ W  +ISG+ +NG  +EA+ LFR M+S ++ P+S  +
Sbjct: 319 YAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITV 378

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S ++ACAQ+G+L+   W+  YI     + D I+  +LID YAKCGS+D+A  VF    D
Sbjct: 379 TSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPD 438

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           KDV  +++ + G  ++G   E+  LF  M+  G+SP+ ++++ +L+AC + G VE+G+  
Sbjct: 439 KDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDL 498

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           FH M D +GI+P   HYAC+VDLLGRAG L+ A NF+ +MP++P   +WG LL AC++HR
Sbjct: 499 FHRMRD-YGIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSACKIHR 557

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           +  +G+     L   D  + G Y+ LSN+Y  +   +   +VR  MR++ + +  G S+I
Sbjct: 558 HVTLGEYAAERLFSLDPYNTGHYVQLSNLYASSCLWDCVAKVRVLMREKGLTKHLGYSVI 617

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E++G +  F AGD++H +++EI++  E++ +++K  G+   T SV+ D+  EE E  +  
Sbjct: 618 EINGKLQAFQAGDKTHPRSKEIFEEVEDLERRLKEAGFVPHTESVLHDLNYEETEETLCN 677

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSE+LA+A+GLI T PG+ +RI KN+R C +CH+A+KL+SK+  R+I +RD   +HHF+D
Sbjct: 678 HSERLAIAYGLISTPPGTTLRITKNLRACDNCHAAIKLISKLVSREIVVRDACRFHHFKD 737

Query: 503 GSCSCLEYW 511
           G+CSC +YW
Sbjct: 738 GACSCGDYW 746



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/352 (26%), Positives = 168/352 (47%), Gaps = 41/352 (11%)

Query: 9   YDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM 68
           Y  F+   L+   S  G V  AR +FD+  D DV  WN+++  Y R+G     ++++ +M
Sbjct: 105 YGGFLIAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARM 164

Query: 69  P----QRNDVSWNSIL-------------------------------GGLV----RFGSV 89
                  +  S+  +L                                GLV    + G +
Sbjct: 165 QVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEI 224

Query: 90  DDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
             A  VF ++  R++VSW  +ISG+AQNG+P EAL +F EM+  ++ P+   LVS+L A 
Sbjct: 225 VRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAY 284

Query: 150 AQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYT 209
             +  L++G  ++  + K  ++ +  L  +L  +YAKCG + +A   F+   +  +  + 
Sbjct: 285 TDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWN 344

Query: 210 SAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDV 269
           + I G   NG++ EA ELF  MKSK I PDSI+  + ++AC+ +G +E    +      +
Sbjct: 345 AMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELA-RWMDEYISM 403

Query: 270 HGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
              + ++     ++D   + G ++ A      +P K D V+W  ++    +H
Sbjct: 404 SEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDK-DVVVWSAMMVGYGLH 454



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 80/180 (44%), Gaps = 7/180 (3%)

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
           N +Y+ +    ++    L A L++  +  G +  A ++F  + D DV  + + +   + +
Sbjct: 92  NQIYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRH 151

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDH 278
           G    A E++  M+   +SPD  S+  VL ACS L  +E G    H     HG + ++  
Sbjct: 152 GFFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMG-RRVHGQIFRHGFESDVFV 210

Query: 279 YACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338
              +V L  + G +  A N +    +    V W +++        A+ GQ I  + I S+
Sbjct: 211 QNGLVALYAKCGEIVRA-NAVFGRLVDRTIVSWTSIISG-----YAQNGQPIEALRIFSE 264


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 209/510 (40%), Positives = 323/510 (63%), Gaps = 32/510 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
            +K  F+ +  V+  +++ Y  CG + DAR VF+E  + DVV+   MI+ Y   G     
Sbjct: 173 ALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPE-DVVASTVMISSYSDQG----- 226

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
                                      V++A  VF+++ ++  V W  +I GF +N    
Sbjct: 227 --------------------------LVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETN 260

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
            AL  FR MQ  ++ PN   +V +LSAC+QLGAL+ G WV+SY++K  I+L+  +  ALI
Sbjct: 261 RALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALI 320

Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
           +MY++CGSID A  VF    D+DV  Y + I GL+MNG S +A ELF  M  + + P ++
Sbjct: 321 NMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNV 380

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
           +++ VL+ACSH G V+ GF  FHSM   + ++P+++HY CMVDLLGR G LEEA + I +
Sbjct: 381 TFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRT 440

Query: 302 MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361
           M M PD+++ GTLL AC++H+N E+G+++   L +  Q   G Y+LLS++Y  + K + A
Sbjct: 441 MKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQADSGTYVLLSHVYASSGKWKEA 500

Query: 362 EEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYN 421
            +VR  M++  +++ PGCS IE++  +HEFL GD  H + + IY+  EE+ + ++  GY+
Sbjct: 501 AQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPQKERIYEKLEELNRLLRLEGYH 560

Query: 422 VETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLV 481
            E   V+ DIE+ EKE  +  HSE+LA+ +GLI T+P ++IR++KN+R+C DCHSA+KL+
Sbjct: 561 PEKEVVLQDIEDGEKEWALAMHSERLAICYGLISTEPCTMIRVMKNLRVCYDCHSAIKLI 620

Query: 482 SKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           +K+ +RKI +RDR  +H+FE+G+CSC +YW
Sbjct: 621 AKITRRKIVVRDRNRFHYFENGACSCGDYW 650



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 115/258 (44%), Gaps = 32/258 (12%)

Query: 88  SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLS 147
           ++D A R+F      ++  +  LI GF  +G   EA+ L+  M    + P++ ++ S+L 
Sbjct: 96  AIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILK 155

Query: 148 ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH--------- 198
           AC    AL  G  V+S   K     + ++   ++++Y KCG +  A +VF          
Sbjct: 156 ACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAS 215

Query: 199 -----SYGD----------------KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGIS 237
                SY D                KD   +T+ I G   N  +  A E F  M+ + + 
Sbjct: 216 TVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVR 275

Query: 238 PDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAEN 297
           P+  + + VLSACS LG +E G  + HS      I+  L     ++++  R G ++EA+ 
Sbjct: 276 PNEFTIVCVLSACSQLGALEIG-RWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQT 334

Query: 298 FIASMPMKPDNVIWGTLL 315
               M  + D + + T++
Sbjct: 335 VFDEMKDR-DVITYNTMI 351



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 67/143 (46%), Gaps = 4/143 (2%)

Query: 173 DSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMK 232
           D  +   L+   +KC +ID A ++F    + +V  YT+ I G   +G+ +EA +L+  M 
Sbjct: 80  DPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRML 139

Query: 233 SKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLL 292
            + I PD+    ++L AC     + +G    HS     G          +++L G+ G L
Sbjct: 140 HESILPDNYLMASILKACGSQLALREG-REVHSRALKLGFSSNRLVRLRIMELYGKCGEL 198

Query: 293 EEAENFIASMPMKPDNVIWGTLL 315
            +A      M   P++V+  T++
Sbjct: 199 GDARRVFEEM---PEDVVASTVM 218


>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Glycine max]
          Length = 673

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/516 (41%), Positives = 320/516 (62%), Gaps = 7/516 (1%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V K     ++FV N LI  Y  CG + +AR V DE    DVVSWNSM+ GY +N +  + 
Sbjct: 159 VFKVGLDLNLFVGNGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDDA 218

Query: 62  LKL---FDKMPQRNDVSWNSILGGLVRFGSVDDACRV---FNQMPKRSLVSWVVLISGFA 115
           L +    D + Q+ D    + L   V   S ++   V   F  + K+SLVSW V+IS + 
Sbjct: 219 LDICREMDGVRQKPDACTMASLLPAVTNTSSENVLYVEEMFMNLEKKSLVSWNVMISVYM 278

Query: 116 QNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI 175
           +N  P +++ L+ +M   ++EP++    S+L AC  L AL  G  ++ Y+++K +  + +
Sbjct: 279 KNSMPGKSVDLYLQMGKCEVEPDAITCASVLRACGDLSALLLGRRIHEYVERKKLCPNML 338

Query: 176 LCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG 235
           L  +LIDMYA+CG ++ A +VF     +DV+++TS I    M G    A  LF  M++ G
Sbjct: 339 LENSLIDMYARCGCLEDAKRVFDRMKFRDVASWTSLISAYGMTGQGYNAVALFTEMQNSG 398

Query: 236 ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA 295
            SPDSI+++A+LSACSH G + +G +YF  M D + I P ++H+AC+VDLLGR+G ++EA
Sbjct: 399 QSPDSIAFVAILSACSHSGLLNEGKFYFKQMTDDYKITPIIEHFACLVDLLGRSGRVDEA 458

Query: 296 ENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVET 355
            N I  MPMKP+  +WG LL +CRV+ N ++G    + L++      G Y+LLSNIY + 
Sbjct: 459 YNIIKQMPMKPNERVWGALLSSCRVYSNMDIGILAADKLLQLAPEESGYYVLLSNIYAKA 518

Query: 356 LKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKI 415
            +      +R  M++R+I++ PG S +EL+  VH FLAGD  H +++EIY+    +V K+
Sbjct: 519 GRWTEVTAIRSLMKRRRIRKMPGISNVELNNQVHTFLAGDTYHPQSKEIYEELSVLVGKM 578

Query: 416 KNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCH 475
           K  GY  +T S + D+EEE+KE  +  HSEKLA+ F ++ T+  S IRI KN+R+C DCH
Sbjct: 579 KELGYVPKTDSALHDVEEEDKECHLAVHSEKLAIVFAILNTQE-SPIRITKNLRVCGDCH 637

Query: 476 SAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            A KL+SK+ +R+I IRD   +HHF+DG CSC +YW
Sbjct: 638 IAAKLISKIVQREIVIRDTNRFHHFKDGICSCGDYW 673



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 73/307 (23%), Positives = 135/307 (43%), Gaps = 27/307 (8%)

Query: 95  VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA 154
           VF+ +P+R+++ + V+I  +  N    +AL +FR+M S    P+      +L AC+    
Sbjct: 89  VFDVIPERNVIFYNVMIRSYMNNHLYDDALLVFRDMVSGGFSPDHYTYPCVLKACSCSDN 148

Query: 155 LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFG 214
           L  G  ++  + K  + L+  +   LI +Y KCG +  A  V      KDV ++ S + G
Sbjct: 149 LRIGLQLHGAVFKVGLDLNLFVGNGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAG 208

Query: 215 LAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP 274
            A N    +A ++   M      PD+ +  ++L A ++     +   Y   MF ++  K 
Sbjct: 209 YAQNMQFDDALDICREMDGVRQKPDACTMASLLPAVTNTS--SENVLYVEEMF-MNLEKK 265

Query: 275 ELDHYACMVDLLGRAGLLEEAENFIASM---PMKPDNVIWGTLLGAC----------RVH 321
            L  +  M+ +  +  +  ++ +    M    ++PD +   ++L AC          R+H
Sbjct: 266 SLVSWNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRACGDLSALLLGRRIH 325

Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
              E  +   NML+E+          L ++Y      E+A+ V   M+ R +  A   SL
Sbjct: 326 EYVERKKLCPNMLLENS---------LIDMYARCGCLEDAKRVFDRMKFRDV--ASWTSL 374

Query: 382 IELDGVV 388
           I   G+ 
Sbjct: 375 ISAYGMT 381



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 61/138 (44%), Gaps = 2/138 (1%)

Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
           L+  YA  G   LA  VF    +++V  Y   I     N    +A  +F +M S G SPD
Sbjct: 73  LMRAYAARGEPGLARNVFDVIPERNVIFYNVMIRSYMNNHLYDDALLVFRDMVSGGFSPD 132

Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI 299
             +Y  VL ACS    +  G     ++F V G+   L     ++ L G+ G L EA   +
Sbjct: 133 HYTYPCVLKACSCSDNLRIGLQLHGAVFKV-GLDLNLFVGNGLIALYGKCGCLPEARCVL 191

Query: 300 ASMPMKPDNVIWGTLLGA 317
             M  K D V W +++  
Sbjct: 192 DEMQSK-DVVSWNSMVAG 208


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/549 (38%), Positives = 329/549 (59%), Gaps = 39/549 (7%)

Query: 2    VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
            VVK+ F +D+ V+N+LI  Y+ CG ++DAR +F++    D++SW +MI G  ++G   E 
Sbjct: 472  VVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEA 531

Query: 62   LKLFDKMPQR----NDVSWNSILGG-------------------------------LVRF 86
            L +F  M Q     N V++ SIL                                 LV  
Sbjct: 532  LAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNM 591

Query: 87   ----GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
                GSV DA +VF++M +R +V++  +I G+A +   KEAL LF  +Q   L+P+    
Sbjct: 592  YSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTY 651

Query: 143  VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            +++L+ACA  G+L++   ++S + K     D+ L  AL+  YAKCGS   A+ VF     
Sbjct: 652  INMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMK 711

Query: 203  KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
            ++V ++ + I G A +G   +  +LFE MK +GI PD ++++++LSACSH G +E+G  Y
Sbjct: 712  RNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRY 771

Query: 263  FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
            F SM    GI P ++HY CMVDLLGRAG L+E E  I +MP + +  IWG LLGACR+H 
Sbjct: 772  FCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIHG 831

Query: 323  NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
            N  + +R     ++ D ++   Y+ LS++Y      ++A ++RK M +R + + PG S I
Sbjct: 832  NVPVAERAAESSLKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWI 891

Query: 383  ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
            E+   +H F+A DRSH ++++IY   +++   +K  GY  +TRSVM D++E EKE  + +
Sbjct: 892  EVGDKLHYFVAEDRSHPESEKIYAELDKLTHAMKMEGYVPDTRSVMHDVDEGEKENAVCH 951

Query: 443  HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
            HSE+LA+A+GLI T PG+ IRI KN+R+C DCH+A K ++K+  R+I  RD   +HHF+D
Sbjct: 952  HSERLAIAYGLISTLPGTPIRIFKNLRVCPDCHTATKFITKIVDREIVARDVNRFHHFKD 1011

Query: 503  GSCSCLEYW 511
            G CSC +YW
Sbjct: 1012 GVCSCGDYW 1020



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 125/447 (27%), Positives = 211/447 (47%), Gaps = 75/447 (16%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLD--VVSWNSMINGYVRNGEIL 59
           ++++    D +  N+LI  Y  CG + +AR V+++ +  +  V SWN+M+ GYV+ G I 
Sbjct: 167 IIQHCTVLDQYTVNALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIE 226

Query: 60  EGLKLFDKMPQRN--------------------------------------DVS-WNSIL 80
           E LKL  +M Q                                        DV+  N IL
Sbjct: 227 EALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCIL 286

Query: 81  GGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
               + GS+ +A  VF++M  +S+VSW ++I G+A  G  + A  +F++MQ   + PN  
Sbjct: 287 NMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRI 346

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
             +++L+A +   AL +G  V+S+I     + D  +  AL+ MYAKCGS     QVF   
Sbjct: 347 TYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKL 406

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC---SHLGW-- 255
            ++D+ A+ + I GLA  G+  EA E++  M+ +G+ P+ I+Y+ +L+AC   + L W  
Sbjct: 407 VNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGR 466

Query: 256 ------VEKGFYY-------FHSMFDVHG------------IKPELDHYACMVDLLGRAG 290
                 V+ GF +         SM+   G            ++ ++  +  M+  L ++G
Sbjct: 467 EIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSG 526

Query: 291 LLEEAENFIASMP---MKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYI- 346
           L  EA      M    +KP+ V + ++L AC      + G+RI   +IE+    D     
Sbjct: 527 LGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVAN 586

Query: 347 LLSNIYVETLKGENAEEVRKTMRKRKI 373
            L N+Y      ++A +V   M +R I
Sbjct: 587 TLVNMYSMCGSVKDARQVFDRMTQRDI 613



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 94/201 (46%), Gaps = 12/201 (5%)

Query: 123 ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182
           A+ + + +Q      NS   + +L  C ++  L  G  V+ +I + C  LD     ALI+
Sbjct: 125 AMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALIN 184

Query: 183 MYAKCGSIDLAMQVFH--SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           MY +CGSI+ A QV++  ++ ++ V ++ + + G    G+  EA +L   M+  G++   
Sbjct: 185 MYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGR 244

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPEL----DHYACMVDLLGRAGLLEEAE 296
            + + +LS+C     +E G         V  +K  L    +   C++++  + G + EA 
Sbjct: 245 ATTMRLLSSCKSPSALECG-----REIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAR 299

Query: 297 NFIASMPMKPDNVIWGTLLGA 317
                M  K   V W  ++G 
Sbjct: 300 EVFDKMETK-SVVSWTIIIGG 319



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 101/208 (48%), Gaps = 19/208 (9%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V+K+ +  D  + N+L+  Y+ CG   DA  VFD+    +V+SWN++I G  ++G   +
Sbjct: 673 LVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQD 732

Query: 61  GLKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPK-----RSLVSWVVLI 111
            L+LF++M     + + V++ S+L      G +++  R F  M +      ++  +  ++
Sbjct: 733 VLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMV 792

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK 171
               + G+  E  AL + M     + N+ I  +LL AC   G +     V     +  +K
Sbjct: 793 DLLGRAGQLDEVEALIKTMP---FQANTRIWGALLGACRIHGNVP----VAERAAESSLK 845

Query: 172 LD---SILCAALIDMYAKCGSIDLAMQV 196
           LD   + +  AL  MYA  G  D A ++
Sbjct: 846 LDPDNAAVYVALSHMYAAAGMWDSAAKL 873


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/550 (38%), Positives = 320/550 (58%), Gaps = 39/550 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +VVK  F +DV    SL+  YS  GR+ DA  VF+E  +  VV+W ++ +GY   G+  E
Sbjct: 136 LVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAGKHRE 195

Query: 61  GLKLFDKMP---------------------------------------QRNDVSWNSILG 81
            + LF KM                                        Q+N     +++ 
Sbjct: 196 AIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKNSFVRTTLVN 255

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G ++ A  VF+ M ++ +V+W  +I G+A N  PKE +  F +M   +L+P+   
Sbjct: 256 LYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQENLKPDQFS 315

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           +V  LS+CA LGALD G W  S I +     +  +  ALIDMYAKCG++    +VF    
Sbjct: 316 IVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMK 375

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
           +KD+    +AI GLA NGH   +F +F   +  GISPD  +++ +L  C H G ++ G  
Sbjct: 376 EKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLR 435

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           +F+++  V+ +K  ++HY CMVDL GRAG+L++A   I  MPM+P+ ++WG LL  CR+ 
Sbjct: 436 FFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLV 495

Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
           ++ ++ + +   LI  +  + G Y+ LSNIY  + + + A EVR  M ++ +K+ PG S 
Sbjct: 496 KDTQLAETVLKELIALEPWNAGNYVQLSNIYSVSGRWDEAAEVRDMMNRKGMKKIPGYSW 555

Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIG 441
           IEL+G VHEFLA D+SH  + +IY   E++  +++  G+   T  V FD+E+EEKE V+G
Sbjct: 556 IELEGTVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEDEEKERVLG 615

Query: 442 YHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
           +HSEKLA+AFGLI T  G VIR+VKN+R+C DCH  MKL+SK+ +R+I +RD   +H F 
Sbjct: 616 HHSEKLAVAFGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFT 675

Query: 502 DGSCSCLEYW 511
           +GSCSC +YW
Sbjct: 676 NGSCSCNDYW 685



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 102/221 (46%), Gaps = 2/221 (0%)

Query: 95  VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA 154
           +F+     ++  +  LI+GF  N    E L LF  ++   L  +      +L AC +   
Sbjct: 67  LFSHTQFPNIFLYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTRASN 126

Query: 155 LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFG 214
              G  ++S + K     D     +L+ +Y+  G ++ A +VF    ++ V  +T+   G
Sbjct: 127 RKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSG 186

Query: 215 LAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP 274
               G   EA +LF+ M   G+ PDS   + VLSAC H+G ++ G +    M ++   K 
Sbjct: 187 YTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKN 246

Query: 275 ELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
                  +V+L  + G +E+A +   SM  K D V W T++
Sbjct: 247 SFVR-TTLVNLYAKCGKMEKARSVFDSMGEK-DIVTWSTMI 285


>gi|115470597|ref|NP_001058897.1| Os07g0150000 [Oryza sativa Japonica Group]
 gi|34393394|dbj|BAC82905.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610433|dbj|BAF20811.1| Os07g0150000 [Oryza sativa Japonica Group]
          Length = 592

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/510 (42%), Positives = 320/510 (62%), Gaps = 8/510 (1%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDL-DVVSWNSMINGYVRNGEILEGLKLFDKM 68
           D F  N++++  +   R R A  +      L D  ++  +I    R   + EG  L  + 
Sbjct: 83  DPFPLNTVLRIAAGSPRPRVALELHRRRLALPDTHTYPPLIQACARLLALREGECLHAEA 142

Query: 69  PQRNDVSWNSILGGLVRF----GSVDDACRVFNQMP--KRSLVSWVVLISGFAQNGRPKE 122
            +   V+   +   LV      G  + A +VF++MP   R+LVSW  +++ FA NGRP E
Sbjct: 143 AKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNE 202

Query: 123 ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182
            L +F EM  +D  P+   +VS+L+ACA+ GAL  G  V+ Y++K  +  +S +  ALID
Sbjct: 203 VLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALID 262

Query: 183 MYAKCGSIDLAMQVFHSYG-DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
           +YAKCGS++ A ++F   G  + V ++TS I GLA NG   EA ELF  M+ + + P  I
Sbjct: 263 LYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEI 322

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
           + + VL ACSH G V+ GF YF  M + +GI P ++H  CMVDLLGRAG +EEA ++I +
Sbjct: 323 TMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIIT 382

Query: 302 MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361
           MP++P+ V+W TLLG+C +H+  E+G+     L+E D  H G Y+LLSN+Y       + 
Sbjct: 383 MPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLVELDPGHSGDYVLLSNLYAAVGMWADV 442

Query: 362 EEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYN 421
             +RKTM K ++++ PG SL+EL   V+EF+ GDRSH ++++IY+   EI ++++  GY 
Sbjct: 443 HVLRKTMVKDRVRKNPGHSLVELRNSVYEFVMGDRSHPESEQIYEMLAEIAERLRREGYI 502

Query: 422 VETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLV 481
             T +V+ DIEEEEKET + YHSE+LA+AF L+ + PG  IRI+KN+R+C DCH A  L+
Sbjct: 503 PRTSNVLADIEEEEKETALNYHSERLAIAFALLKSLPGIPIRIIKNLRMCGDCHVAFNLI 562

Query: 482 SKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           SKV+ R+I +RDR  +HHF+ G+CSC +YW
Sbjct: 563 SKVYDREIIVRDRSRFHHFQGGACSCKDYW 592



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 106/235 (45%), Gaps = 47/235 (20%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESD--DLDVVSWNSMINGYVRNGEILEG 61
           KN F   VFV+NSL+  Y  CG    A  VFDE      ++VSWNSM+N +  NG   E 
Sbjct: 144 KNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEV 203

Query: 62  LKLF------DKMPQ---------------------------------RNDVSWNSILGG 82
           L +F      D  P                                   N    N+++  
Sbjct: 204 LTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDL 263

Query: 83  LVRFGSVDDACRVFNQMP-KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
             + GSV+DA R+F +M   R++VSW  LI G A NG  KEAL LF  M+   L P    
Sbjct: 264 YAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEIT 323

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKK---CIKLDSILCAALIDMYAKCGSIDLA 193
           +V +L AC+  G +D G   +  +++      +++ + C  ++D+  + G ++ A
Sbjct: 324 MVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGC--MVDLLGRAGRVEEA 376


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 230/580 (39%), Positives = 331/580 (57%), Gaps = 76/580 (13%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDES------------------------ 37
           V+K  F  D++V  SLI  Y+  GR+ DAR VFD S                        
Sbjct: 115 VLKLGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESA 174

Query: 38  ----DDL---DVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDV---------------- 74
               D++   DVVSWN+MI+GYV  G   E L+LF +M    +V                
Sbjct: 175 QKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQ 234

Query: 75  -----------SW-------------NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVL 110
                      SW             N+++    +FG V+ AC +F+ +  + ++SW  L
Sbjct: 235 SDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTL 294

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKK-- 168
           I G+      KEAL LF+EM      PN   ++S+L ACA LGA+D G W++ YI KK  
Sbjct: 295 IGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLK 354

Query: 169 -CIKLDSILCAALIDMYAKCGSIDLAMQVF-HSYGDKDVSAYTSAIFGLAMNGHSIEAFE 226
             +   S L  +LIDMYAKCG ID A QVF  S  ++ +S + + I G AM+G +  AF+
Sbjct: 355 GVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFD 414

Query: 227 LFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLL 286
           +F  M+  GI PD I+++ +LSACSH G ++ G   F SM   + I P+L+HY CM+DLL
Sbjct: 415 IFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLL 474

Query: 287 GRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYI 346
           G +GL +EAE  I +MPM+PD VIW +LL AC++H N E+G+     LI+ +  + G Y+
Sbjct: 475 GHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPGNSGSYV 534

Query: 347 LLSNIYVETLKGENAEEVRKTMRKRKI-KRAPGCSLIELDGVVHEFLAGDRSHEKTQEIY 405
           LLSNIY    +     ++R  +  + + K+ PGCS IE+D VVHEF+ GD+ H + +EIY
Sbjct: 535 LLSNIYAAAGRWNEVAKIRALLNDKGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREIY 594

Query: 406 QFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIV 465
              EE+   ++  G+  +T  V+ ++EEE +E  + +HSEKLA+AFGLI TKPG+ + I+
Sbjct: 595 GMLEEMEVLLEEAGFVPDTSEVLQEMEEEWREGALRHHSEKLAIAFGLISTKPGTKLTIM 654

Query: 466 KNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSC 505
           KN+R+C +CH A KL+SK++KR+I  RDR  + HF DG C
Sbjct: 655 KNLRVCKNCHEATKLISKIYKREIIARDRTRFXHFRDGVC 694



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 114/258 (44%), Gaps = 34/258 (13%)

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           A  VF+ + + +L+ W  +  G A +  P  AL L+  M SL L P+S     LL +CA+
Sbjct: 42  AISVFDTIQEPNLLIWNTMFRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAK 101

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSA 211
                 G  ++ ++ K    LD  +  +LI MYA+ G ++ A +VF     +DV +YT+ 
Sbjct: 102 SKIRKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTAL 161

Query: 212 IFGL-------------------------AM------NGHSIEAFELF-ENMKSKGISPD 239
           I G                          AM       G+  EA ELF E M    + PD
Sbjct: 162 IAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPD 221

Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI 299
             + + V+SAC+    +E G  + HS  + HG    L     ++DL  + G +E A    
Sbjct: 222 ESTMVTVVSACAQSDSIELG-RHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELF 280

Query: 300 ASMPMKPDNVIWGTLLGA 317
             +  K D + W TL+G 
Sbjct: 281 DGLWNK-DVISWNTLIGG 297


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/539 (39%), Positives = 325/539 (60%), Gaps = 40/539 (7%)

Query: 13  VKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM---- 68
           V   LI  YS CG V  AR +FD  +  D+V++N++I+GY  NG +   + LF ++    
Sbjct: 249 VLTGLISLYSKCGDVESARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLG 308

Query: 69  ----------------PQRNDV--------------SWNSILGGLV-----RFGSVDDAC 93
                           P  +D+              + NS +   +     R   ++ A 
Sbjct: 309 LWPNSSTLVALIPVHSPFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESAR 368

Query: 94  RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153
           + F+ MP++++ SW  +ISG+AQNG  + A+ALF +M  L++ PN   + S LSACAQLG
Sbjct: 369 KAFDTMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLG 428

Query: 154 ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIF 213
           AL  G W++  I ++ ++ +  +  ALIDMYAKCGSI  A ++F++  +K+V ++ + I 
Sbjct: 429 ALSLGKWLHRIITEEDLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIA 488

Query: 214 GLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIK 273
           G  ++G   EA +L+++M    + P S ++++VL ACSH G VE+G+  F SM D + I 
Sbjct: 489 GYGLHGQGAEALKLYKDMLDAHLLPTSATFLSVLYACSHGGLVEEGWKVFRSMTDDYAIN 548

Query: 274 PELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNV-IWGTLLGACRVHRNAEMGQRIGN 332
           P ++H  CMVDLLGRAG L+EA   I+  P       +WG LLGAC VH+++++ +    
Sbjct: 549 PGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGVWGALLGACMVHKDSDLAKLASQ 608

Query: 333 MLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFL 392
            L E D  + G Y+LLSN++    +   A  VR+  + RK+ + PG +LIE+    H F+
Sbjct: 609 KLFELDPENSGYYVLLSNLHTSKKQYSEAAVVRQEAKSRKLVKTPGYTLIEIGNKPHVFM 668

Query: 393 AGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFG 452
           AGDR+H +++ IY + E++  K+   GY  ET + ++D+EEEEKE ++  HSEKLA+AFG
Sbjct: 669 AGDRAHPQSEAIYSYLEKLTAKMIEAGYRPETEAALYDVEEEEKEHMVKVHSEKLAIAFG 728

Query: 453 LICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           L+ T+PG+ IRI+KN+R+C DCH+A K +SKV +R I +RD   +HHF DG CSC +YW
Sbjct: 729 LLSTEPGTEIRIIKNLRVCLDCHNATKFISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 787



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 165/362 (45%), Gaps = 39/362 (10%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGY------------VRNGE 57
           D FV ++L + Y V  RV  AR VFD     D V WN+++ G             V +G 
Sbjct: 148 DTFVASALAKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLAGLSGSEAVESFARMVCDGS 207

Query: 58  I-LEGLKLFDKMPQRNDVS-------------------WNSILGGLVRF----GSVDDAC 93
           +  +   L   +P   +V+                      +L GL+      G V+ A 
Sbjct: 208 VRPDATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVESAR 267

Query: 94  RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153
            +F+ M K  LV++  LISG++ NG    ++ LF E+ +L L PNS+ LV+L+   +  G
Sbjct: 268 CLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFG 327

Query: 154 ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIF 213
                  ++ ++ K     +S +  A+  ++ +   ++ A + F +  +K + ++ + I 
Sbjct: 328 HDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMIS 387

Query: 214 GLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIK 273
           G A NG +  A  LFE M    + P+ I+  + LSAC+ LG +  G  + H +     ++
Sbjct: 388 GYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLG-KWLHRIITEEDLE 446

Query: 274 PELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH-RNAEMGQRIGN 332
           P +     ++D+  + G + EA     +M  K + V W  ++    +H + AE  +   +
Sbjct: 447 PNVYVMTALIDMYAKCGSISEARRIFNTMDNK-NVVSWNAMIAGYGLHGQGAEALKLYKD 505

Query: 333 ML 334
           ML
Sbjct: 506 ML 507



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 123/289 (42%), Gaps = 44/289 (15%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K+ F  +  V  ++   +     +  AR  FD   +  + SWN+MI+GY +NG     
Sbjct: 339 VLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGLTEMA 398

Query: 62  LKLFDKMPQRNDVSWNSI-----------LGGL--------------------------- 83
           + LF++M + N V  N I           LG L                           
Sbjct: 399 VALFEQMVKLN-VRPNPITISSTLSACAQLGALSLGKWLHRIITEEDLEPNVYVMTALID 457

Query: 84  --VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + GS+ +A R+FN M  +++VSW  +I+G+  +G+  EAL L+++M    L P SA 
Sbjct: 458 MYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALKLYKDMLDAHLLPTSAT 517

Query: 142 LVSLLSACAQLGALDYGNWVY-SYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
            +S+L AC+  G ++ G  V+ S      I      C  ++D+  + G +  A ++   +
Sbjct: 518 FLSVLYACSHGGLVEEGWKVFRSMTDDYAINPGIEHCTCMVDLLGRAGQLKEAFELISEF 577

Query: 201 GDKDVSAYT-SAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248
               V      A+ G  M  H         + K   + P++  Y  +LS
Sbjct: 578 PKSAVGPGVWGALLGACMV-HKDSDLAKLASQKLFELDPENSGYYVLLS 625



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++ +     +V+V  +LI  Y+ CG + +AR +F+  D+ +VVSWN+MI GY  +G+  E
Sbjct: 439 IITEEDLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAE 498

Query: 61  GLKLFDKMPQ----RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLI 111
            LKL+  M          ++ S+L      G V++  +VF  M     ++        ++
Sbjct: 499 ALKLYKDMLDAHLLPTSATFLSVLYACSHGGLVEEGWKVFRSMTDDYAINPGIEHCTCMV 558

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
               + G+ KEA  L  E     + P   +  +LL AC
Sbjct: 559 DLLGRAGQLKEAFELISEFPKSAVGPG--VWGALLGAC 594


>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Brachypodium distachyon]
          Length = 706

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 209/534 (39%), Positives = 323/534 (60%), Gaps = 32/534 (5%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DV  + +++  Y   GR+ +AR +FDE    +VVSW +MI+GY +NG+++   KLF+ MP
Sbjct: 173 DVVARTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGKVILARKLFEVMP 232

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK-------- 121
            RN+VSW ++L G ++ G V+DA  +FN MP   + +   ++ GF Q+G           
Sbjct: 233 DRNEVSWTAMLVGYIQAGHVEDAEDLFNAMPDHPVAACNAMMVGFGQHGMVDAAKAMFER 292

Query: 122 -----------------------EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
                                  EAL+ FREM    + PN    +S+L+ CA L   DYG
Sbjct: 293 MCARDDGTWSAMIKVYEQNEFLMEALSTFREMLCRGIRPNYTSFISILTVCAALATADYG 352

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
             +++ + +     D    +ALI MY KCG++D A +VF+ +  KDV  + S I G A +
Sbjct: 353 RELHAAMLRCSFDTDVFAVSALITMYIKCGNLDKAKRVFNMFEPKDVVMWNSMITGYAQH 412

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDH 278
           G   EA  +F++++   ++PD I+YI VL+ACS+ G V++G   F+SM     I+    H
Sbjct: 413 GLGEEALGIFDDLRLARMAPDGITYIGVLTACSYTGKVKEGREIFNSMGMNSSIRLGAAH 472

Query: 279 YACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338
           Y+CMVDLLGRAGL++EA + I +MP++PD +IWG L+GACR+H+NAE+ +     L+E +
Sbjct: 473 YSCMVDLLGRAGLVDEALDLINNMPVEPDAIIWGALMGACRMHKNAEIAEVAAKKLLELE 532

Query: 339 QNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGD-RS 397
               G Y+LLS+IY  T + E+A ++RK +  R + ++PGCS IE + +VH F +GD  S
Sbjct: 533 PGSAGPYVLLSHIYTSTGRWEDASDMRKFISSRNLNKSPGCSWIEYNKMVHLFTSGDVLS 592

Query: 398 HEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTK 457
           H +   I    EE+   +   GY+ +   V+ D++EE+K   + YHSE+ A+A+GL+   
Sbjct: 593 HPEHAIILNMLEELDGLLMESGYSADGSFVLHDVDEEQKAQSLRYHSERQAVAYGLLKVP 652

Query: 458 PGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            G  IR++KN+R+C DCHSA+KL++K+  R+I +RD   +HHF+DG CSC +YW
Sbjct: 653 AGMPIRVMKNLRVCGDCHSAIKLITKITSREIILRDANRFHHFKDGLCSCRDYW 706



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 155/307 (50%), Gaps = 10/307 (3%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDV 74
            SL++ Y   G + DA  +F +  + + V++  ++ G++  G + E  KLFD+MP ++ V
Sbjct: 116 TSLLRGYVRHGLLADAIRLFHQMPERNHVTYTVLLGGFLDAGRVNEARKLFDEMPDKDVV 175

Query: 75  SWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD 134
           +  ++L G  + G + +A  +F++MPKR++VSW  +ISG+AQNG+   A  LF  M   +
Sbjct: 176 ARTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGKVILARKLFEVMPDRN 235

Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
               +A+LV  +    Q G ++    +++ +    +      C A++  + + G +D A 
Sbjct: 236 EVSWTAMLVGYI----QAGHVEDAEDLFNAMPDHPVA----ACNAMMVGFGQHGMVDAAK 287

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
            +F     +D   +++ I     N   +EA   F  M  +GI P+  S+I++L+ C+ L 
Sbjct: 288 AMFERMCARDDGTWSAMIKVYEQNEFLMEALSTFREMLCRGIRPNYTSFISILTVCAALA 347

Query: 255 WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTL 314
             + G     +M        ++   + ++ +  + G L++A+  + +M    D V+W ++
Sbjct: 348 TADYGRELHAAMLRC-SFDTDVFAVSALITMYIKCGNLDKAKR-VFNMFEPKDVVMWNSM 405

Query: 315 LGACRVH 321
           +     H
Sbjct: 406 ITGYAQH 412



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 122/268 (45%), Gaps = 41/268 (15%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           + +S A  V   N+ I +    G +  AR  FD        S+N++I GY RN      L
Sbjct: 9   LPSSTAPAVVAANARIAWLVRAGNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAAL 68

Query: 63  KLFDKMPQRNDVSWNSILGGL---------------------------------VRFGSV 89
            LF +MP R+  S+N+++ GL                                 VR G +
Sbjct: 69  GLFHRMPSRDLGSYNALIAGLSLRRHTLPDAAAALASIPLPPSVVSFTSLLRGYVRHGLL 128

Query: 90  DDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
            DA R+F+QMP+R+ V++ VL+ GF   GR  EA  LF EM   D+   +A    +LS  
Sbjct: 129 ADAIRLFHQMPERNHVTYTVLLGGFLDAGRVNEARKLFDEMPDKDVVARTA----MLSGY 184

Query: 150 AQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYT 209
            Q G +     ++  + K+ +    +   A+I  YA+ G + LA ++F    D++  ++T
Sbjct: 185 CQAGRITEARALFDEMPKRNV----VSWTAMISGYAQNGKVILARKLFEVMPDRNEVSWT 240

Query: 210 SAIFGLAMNGHSIEAFELFENMKSKGIS 237
           + + G    GH  +A +LF  M    ++
Sbjct: 241 AMLVGYIQAGHVEDAEDLFNAMPDHPVA 268



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 127/268 (47%), Gaps = 21/268 (7%)

Query: 42  VVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPK 101
           VV+ N+ I   VR G I      FD MP R   S+N+++ G  R    D A  +F++MP 
Sbjct: 17  VVAANARIAWLVRAGNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHRMPS 76

Query: 102 RSLVSWVVLISGFA--QNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGN 159
           R L S+  LI+G +  ++  P  A AL     S+ L P+     SLL    + G L    
Sbjct: 77  RDLGSYNALIAGLSLRRHTLPDAAAAL----ASIPLPPSVVSFTSLLRGYVRHGLLADAI 132

Query: 160 WVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNG 219
            ++  + ++     ++L    +D     G ++ A ++F    DKDV A T+ + G    G
Sbjct: 133 RLFHQMPERNHVTYTVLLGGFLD----AGRVNEARKLFDEMPDKDVVARTAMLSGYCQAG 188

Query: 220 HSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG-FYYFHSMFDVHGIKPELDH 278
              EA  LF+ M  + +    +S+ A++S     G+ + G       +F+V   + E+  
Sbjct: 189 RITEARALFDEMPKRNV----VSWTAMIS-----GYAQNGKVILARKLFEVMPDRNEVSW 239

Query: 279 YACMVDLLGRAGLLEEAENFIASMPMKP 306
            A +V  + +AG +E+AE+   +MP  P
Sbjct: 240 TAMLVGYI-QAGHVEDAEDLFNAMPDHP 266



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 12/157 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++ SF  DVF  ++LI  Y  CG +  A+ VF+  +  DVV WNSMI GY ++G   E 
Sbjct: 359 MLRCSFDTDVFAVSALITMYIKCGNLDKAKRVFNMFEPKDVVMWNSMITGYAQHGLGEEA 418

Query: 62  LKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLIS 112
           L +FD +       + +++  +L      G V +   +FN M   S +      +  ++ 
Sbjct: 419 LGIFDDLRLARMAPDGITYIGVLTACSYTGKVKEGREIFNSMGMNSSIRLGAAHYSCMVD 478

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
              + G   EAL L   M    +EP++ I  +L+ AC
Sbjct: 479 LLGRAGLVDEALDLINNMP---VEPDAIIWGALMGAC 512


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 210/549 (38%), Positives = 330/549 (60%), Gaps = 39/549 (7%)

Query: 2    VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
             +K     D FV  +LI  YS  G++ +A ++F   D  D+ SWN++++GY+ +G+  + 
Sbjct: 1063 AMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKA 1122

Query: 62   LKLFDKMPQ---RND----VSWNSILGGLV------------------------------ 84
            L+L+  M +   R+D    V+     GGLV                              
Sbjct: 1123 LRLYILMQESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDM 1182

Query: 85   --RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
              + G ++ A RVF+++P    V+W  +ISG  +NG+ + AL  + +M+   ++P+    
Sbjct: 1183 YLKCGEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTF 1242

Query: 143  VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
             +L+ AC+ L AL+ G  +++ I K     D  +  +L+DMYAKCG+I+ A  +F     
Sbjct: 1243 ATLVKACSLLTALEQGRQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNT 1302

Query: 203  KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
            + ++++ + I GLA +G++ EA + F+ MKS+G+ PD +++I VLSACSH G V + +  
Sbjct: 1303 RRIASWNAMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYEN 1362

Query: 263  FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
            F+SM   +GI+PE++HY+C+VD L RAG +EEAE  I+SMP +    ++ TLL ACRV  
Sbjct: 1363 FYSMQKNYGIEPEIEHYSCLVDALSRAGRIEEAEKVISSMPFEASASMYRTLLNACRVQV 1422

Query: 323  NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
            + E G+R+   L+  + +    Y+LLSN+Y    + EN    R  MRK  +K+ PG S +
Sbjct: 1423 DRETGKRVAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKVNVKKDPGFSWV 1482

Query: 383  ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
            +L   VH F+AGDRSHE+T  IY   E I+K+I+  GY  +T   + D+EEE+KE  + Y
Sbjct: 1483 DLKNKVHLFVAGDRSHEETDVIYNKVEYIMKRIREEGYVPDTDFALVDVEEEDKECSLYY 1542

Query: 443  HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
            HSEKLA+A+GL+ T P + +R++KN+R+C DCHSA+K +SKVFKR+I +RD   +HHF +
Sbjct: 1543 HSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHSAIKYISKVFKREIVLRDANRFHHFRN 1602

Query: 503  GSCSCLEYW 511
            G CSC +YW
Sbjct: 1603 GICSCGDYW 1611



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 93/391 (23%), Positives = 158/391 (40%), Gaps = 73/391 (18%)

Query: 1    MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
            +V+++     V V N LI  Y   G V  AR VF + +++D++SWN+MI+G   +G    
Sbjct: 960  IVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEEC 1019

Query: 61   GLKLF------DKMPQRNDV-----SWNSILGGLV------------------------- 84
             + +F        +P +  V     + +S+ GG                           
Sbjct: 1020 SVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALI 1079

Query: 85   ----RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
                + G +++A  +F       L SW  ++ G+  +G   +AL L+  MQ      +  
Sbjct: 1080 DVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQI 1139

Query: 141  ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
             LV+   A   L  L  G  +++ + K+   LD  + + ++DMY KCG ++ A +VF   
Sbjct: 1140 TLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEI 1199

Query: 201  GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG- 259
               D  A+T+ I G   NG    A   +  M+   + PD  ++  ++ ACS L  +E+G 
Sbjct: 1200 PSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGR 1259

Query: 260  -----FYYFHSMFDVHGIKPELDHYA------------------------CMVDLLGRAG 290
                     +  FD   +   +D YA                         M+  L + G
Sbjct: 1260 QIHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHG 1319

Query: 291  LLEEAENFIASMPMK---PDNVIWGTLLGAC 318
              +EA  F   M  +   PD V +  +L AC
Sbjct: 1320 NAKEALQFFKYMKSRGVMPDRVTFIGVLSAC 1350



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 144/314 (45%), Gaps = 26/314 (8%)

Query: 2    VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
             VK    +DVFV  +L+  Y+  G +R+AR +FD     DVV WN M+  YV      E 
Sbjct: 786  AVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEA 845

Query: 62   LKLFDKMPQR----NDVSWNSI---------LGGLVRFGSVDDACRVFNQMPKRSLVSWV 108
            + LF +  +     +DV+  ++         +  L +F +      +++      ++ W 
Sbjct: 846  MLLFSEFHRTGFRPDDVTLRTLSRVVKCKKNILELKQFKAYATKLFMYDD-DGSDVIVWN 904

Query: 109  VLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKK 168
              +S F Q G   EA+  F +M +  +  +    V +L+  A L  L+ G  ++  + + 
Sbjct: 905  KALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRS 964

Query: 169  CIKLDSILCAA--LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFE 226
               LD ++     LI+MY K GS+  A  VF    + D+ ++ + I G  ++G    +  
Sbjct: 965  --GLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVG 1022

Query: 227  LFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE--LDHY--ACM 282
            +F ++    + PD  +  +VL ACS L    +G YY  +      +K    LD +    +
Sbjct: 1023 MFVHLLRDSLLPDQFTVASVLRACSSL----EGGYYLATQIHACAMKAGVVLDSFVSTAL 1078

Query: 283  VDLLGRAGLLEEAE 296
            +D+  + G +EEAE
Sbjct: 1079 IDVYSKRGKMEEAE 1092



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 109/240 (45%), Gaps = 42/240 (17%)

Query: 1    MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGE--- 57
            +VVK  F  D+FV + ++  Y  CG +  AR VF E    D V+W +MI+G V NG+   
Sbjct: 1163 VVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEH 1222

Query: 58   ----------------------ILEGLKLFDKMPQRNDVSWN--------------SILG 81
                                  +++   L   + Q   +  N              S++ 
Sbjct: 1223 ALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFVMTSLVD 1282

Query: 82   GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
               + G+++DA  +F +   R + SW  +I G AQ+G  KEAL  F+ M+S  + P+   
Sbjct: 1283 MYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVT 1342

Query: 142  LVSLLSACAQLGALD--YGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
             + +LSAC+  G +   Y N+ YS  +   I+ +    + L+D  ++ G I+ A +V  S
Sbjct: 1343 FIGVLSACSHSGLVSEAYENF-YSMQKNYGIEPEIEHYSCLVDALSRAGRIEEAEKVISS 1401



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/332 (21%), Positives = 148/332 (44%), Gaps = 29/332 (8%)

Query: 10   DVFVKNSLIQFYSVCGRVRDARWVFDESDDL--DVVSWNSMINGYVRNGEIL-EGLKLFD 66
            D FV N+LI  Y+ CG +  AR +FD + D   D+V+WN++++    + +   +G  LF 
Sbjct: 690  DRFVTNNLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAILSALAAHADKSHDGFHLF- 748

Query: 67   KMPQRNDVSWN----SILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISG-----FAQN 117
            ++ +R+ VS      + +  +    +   A    +    +  + W V ++G     +A+ 
Sbjct: 749  RLLRRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWDVFVAGALVNIYAKF 808

Query: 118  GRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILC 177
            G  +EA  LF  M   D+   + ++ + +  C +  A+     ++S   +   + D +  
Sbjct: 809  GLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAM----LLFSEFHRTGFRPDDVTL 864

Query: 178  AALIDMYAKCGSIDLAMQVFHSYGDK---------DVSAYTSAIFGLAMNGHSIEAFELF 228
              L     KC    L ++ F +Y  K         DV  +  A+      G + EA + F
Sbjct: 865  RTL-SRVVKCKKNILELKQFKAYATKLFMYDDDGSDVIVWNKALSRFLQRGEAWEAVDCF 923

Query: 229  ENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGR 288
             +M +  ++ D ++++ +L+  + L  +E G    H +    G+   +    C++++  +
Sbjct: 924  VDMINSRVACDGLTFVVMLTVVAGLNCLELG-KQIHGIVMRSGLDQVVSVGNCLINMYVK 982

Query: 289  AGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
            AG +  A +    M  + D + W T++  C +
Sbjct: 983  AGSVSRARSVFGQMN-EVDLISWNTMISGCTL 1013



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 74/177 (41%), Gaps = 5/177 (2%)

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD- 202
           S+L        L  G   ++ I       D  +   LI MYAKCGS+  A ++F +  D 
Sbjct: 661 SILRQAIAASDLSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDT 720

Query: 203 -KDVSAYTSAIFGLAMNG-HSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
            +D+  + + +  LA +   S + F LF  ++   +S    +   V   C  L       
Sbjct: 721 NRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCL-LSASPSAS 779

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
              H      G++ ++     +V++  + GL+ EA      M ++ D V+W  ++ A
Sbjct: 780 ESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVR-DVVLWNVMMKA 835


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/549 (37%), Positives = 325/549 (59%), Gaps = 39/549 (7%)

Query: 2    VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
             +K     D FV  +LI  YS  G++ +A ++F   D  D+ SWN+M++GY+ +G+  + 
Sbjct: 1034 AMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKA 1093

Query: 62   LKLFDKMPQRNDVSWNSIL-------GGLV------------------------------ 84
            L+L+  M +  + +    L       GGLV                              
Sbjct: 1094 LRLYILMQESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDM 1153

Query: 85   --RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
              + G ++ A R+FN++P    V+W  +ISG  +NG+ + AL  +  M+   ++P+    
Sbjct: 1154 YLKCGEMESARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTF 1213

Query: 143  VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
             +L+ AC+ L AL+ G  +++   K     D  +  +L+DMYAKCG+I+ A  +F     
Sbjct: 1214 ATLVKACSLLTALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNT 1273

Query: 203  KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
              ++++ + I GLA +G++ EA + FE MKS+G++PD +++I VLSACSH G V + +  
Sbjct: 1274 SRIASWNAMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYEN 1333

Query: 263  FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
            F+SM  ++GI+PE++HY+C+VD L RAG + EAE  I+SMP +    ++ TLL ACRV  
Sbjct: 1334 FYSMQKIYGIEPEIEHYSCLVDALSRAGRIREAEKVISSMPFEASASMYRTLLNACRVQV 1393

Query: 323  NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
            + E G+R+   L+  + +    Y+LLSN+Y    + EN    R  MRK  +K+ PG S +
Sbjct: 1394 DRETGKRVAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKANVKKDPGFSWV 1453

Query: 383  ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
            +L   VH F+AGDRSHE+T  IY   E I+K+I+  GY  +T   + D+EEE+KE  + Y
Sbjct: 1454 DLKNKVHLFVAGDRSHEETDVIYNKVEYIMKRIREEGYLPDTDFALVDVEEEDKECSLYY 1513

Query: 443  HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
            HSEKLA+A+GL+ T P + +R++KN+R+C DCH+A+K +SKVF+R++ +RD   +HHF  
Sbjct: 1514 HSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHNAIKYISKVFEREVVLRDANRFHHFRS 1573

Query: 503  GSCSCLEYW 511
            G CSC +YW
Sbjct: 1574 GVCSCGDYW 1582



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 97/391 (24%), Positives = 158/391 (40%), Gaps = 73/391 (18%)

Query: 1    MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNG---- 56
            +VV++     V V N LI  Y   G V  AR VF + +++D+VSWN+MI+G   +G    
Sbjct: 931  IVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEEC 990

Query: 57   ------EILEGLKLFDKMPQRNDVSWNSILGG---------------------------- 82
                  ++L G  L D+    + +   S LGG                            
Sbjct: 991  SVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTLI 1050

Query: 83   --LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
                + G +++A  +F       L SW  ++ G+  +G   +AL L+  MQ      N  
Sbjct: 1051 DVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQI 1110

Query: 141  ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
             L +   A   L  L  G  + + + K+   LD  + + ++DMY KCG ++ A ++F+  
Sbjct: 1111 TLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEI 1170

Query: 201  GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG- 259
               D  A+T+ I G   NG    A   + +M+   + PD  ++  ++ ACS L  +E+G 
Sbjct: 1171 PSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGR 1230

Query: 260  -----FYYFHSMFDVHGIKPELDHYA------------------------CMVDLLGRAG 290
                     +  FD   +   +D YA                         M+  L + G
Sbjct: 1231 QIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHG 1290

Query: 291  LLEEAENFIASMPMK---PDNVIWGTLLGAC 318
              EEA  F   M  +   PD V +  +L AC
Sbjct: 1291 NAEEALQFFEEMKSRGVTPDRVTFIGVLSAC 1321



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 88/324 (27%), Positives = 148/324 (45%), Gaps = 42/324 (12%)

Query: 2    VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
             VK    +DVFV  +L+  Y+  GR+R+AR +FD     DVV WN M+  YV  G   E 
Sbjct: 753  AVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEA 812

Query: 62   LKLFDKM--------------------PQRNDVSWNSILGGLVRFGSVDDACRVF---NQ 98
            L LF +                      ++N + W   L  L  +G+     ++F   + 
Sbjct: 813  LLLFSEFNRTGLRPDDVTLCTLARVVKSKQNVLEWQ--LKQLKAYGT-----KLFMYDDD 865

Query: 99   MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
                 +++W   +S F Q G   EA+  F +M +  +  +    V +LS  A L  L+ G
Sbjct: 866  DDGSDVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELG 925

Query: 159  NWVYSYIQKKCIKLDSILCAA--LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLA 216
              ++  + +    LD ++     LI+MY K GS+  A  VF    + D+ ++ + I G A
Sbjct: 926  KQIHGIVVRS--GLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCA 983

Query: 217  MNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE- 275
            ++G    +  +F ++   G+ PD  +  +VL ACS LG    G  +  +      +K   
Sbjct: 984  LSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLG----GGCHLATQIHACAMKAGV 1039

Query: 276  -LDHY--ACMVDLLGRAGLLEEAE 296
             LD +    ++D+  ++G +EEAE
Sbjct: 1040 VLDSFVSTTLIDVYSKSGKMEEAE 1063



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 110/240 (45%), Gaps = 42/240 (17%)

Query: 1    MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGE--- 57
            +VVK  F  D+FV + ++  Y  CG +  AR +F+E    D V+W +MI+G V NG+   
Sbjct: 1134 VVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCVENGQEEH 1193

Query: 58   ----------------------ILEGLKLFDKMPQRNDVSWNS----------ILGGLV- 84
                                  +++   L   + Q   +  N+          ++  LV 
Sbjct: 1194 ALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFDPFVMTSLVD 1253

Query: 85   ---RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
               + G+++DA  +F +     + SW  +I G AQ+G  +EAL  F EM+S  + P+   
Sbjct: 1254 MYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVT 1313

Query: 142  LVSLLSACAQLGALD--YGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
             + +LSAC+  G +   Y N+ YS  +   I+ +    + L+D  ++ G I  A +V  S
Sbjct: 1314 FIGVLSACSHSGLVSEAYENF-YSMQKIYGIEPEIEHYSCLVDALSRAGRIREAEKVISS 1372



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 76/362 (20%), Positives = 140/362 (38%), Gaps = 92/362 (25%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDL--DVVSWNSMINGYVRNGEILEGLKLFDK 67
           D F+ N+LI  YS CG +  AR +FD + D   D+V+WN++++ +       +G  LF +
Sbjct: 660 DRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAILSAHADKAR--DGFHLF-R 716

Query: 68  MPQRNDVS-----------------------------------WNSILGGLV-----RFG 87
           + +R+ VS                                   W+  + G +     +FG
Sbjct: 717 LLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQWDVFVAGALVNIYAKFG 776

Query: 88  SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLS 147
            + +A  +F+ M  R +V W V++  +   G   EAL LF E     L P+         
Sbjct: 777 RIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFNRTGLRPD--------- 827

Query: 148 ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK---- 203
                                    D  LC     + +K   ++  ++   +YG K    
Sbjct: 828 -------------------------DVTLCTLARVVKSKQNVLEWQLKQLKAYGTKLFMY 862

Query: 204 -------DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWV 256
                  DV A+   +      G + EA + F +M +  ++ D ++++ +LS  + L  +
Sbjct: 863 DDDDDGSDVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCL 922

Query: 257 EKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLG 316
           E G    H +    G+   +    C++++  + G +  A      M  + D V W T++ 
Sbjct: 923 ELG-KQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQM-NEVDLVSWNTMIS 980

Query: 317 AC 318
            C
Sbjct: 981 GC 982


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/516 (41%), Positives = 322/516 (62%), Gaps = 7/516 (1%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K    +++FV N LI  Y  CG + +AR VFDE    DVVSWNSM+ GY  N    + 
Sbjct: 145 VLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHNMRFDDA 204

Query: 62  LKLFDKMP---QRNDVSWNSILGGLVRFGSVDDAC---RVFNQMPKRSLVSWVVLISGFA 115
           L++  +M    Q+ D    + L   V   S ++     ++F  + +++L+SW V+I  + 
Sbjct: 205 LEICREMEDYGQKPDGCTMASLMPAVANTSSENVLYVEKIFVNLERKNLISWNVMIRVYM 264

Query: 116 QNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI 175
           +N  P +A+ L+ +M+   +EP++    S+L AC  L AL  G  ++ Y++KK +  + +
Sbjct: 265 KNSLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLSALLLGRRIHEYVEKKKLCPNLL 324

Query: 176 LCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG 235
           L  +LIDMYA+CG +D A +VF     +DV+++TS I    M G    A  LF  M + G
Sbjct: 325 LENSLIDMYARCGCLDDAKRVFDRMKFRDVASWTSLISAYGMTGQGCNAVALFTEMLNSG 384

Query: 236 ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA 295
            +PDSI+++A+LSACSH G +++G  YF  M D + I P ++HYAC+VDLLGRAG ++EA
Sbjct: 385 QAPDSIAFVAILSACSHSGLLDEGRIYFKQMTDDYRITPRIEHYACLVDLLGRAGRVDEA 444

Query: 296 ENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVET 355
            N I  MP++P+  +W TLL +CRV  N ++G    + L++      G Y+LLSNIY + 
Sbjct: 445 YNIIKQMPIEPNERVWATLLSSCRVFTNMDIGILAADNLLQLAPEQSGYYVLLSNIYAKA 504

Query: 356 LKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKI 415
            + +   E+R  M+++KI++ PG S +EL+  VH FLAGD SH +++EIY+    +V K+
Sbjct: 505 GRWKEVTEIRSVMKRKKIRKTPGISNVELNNQVHTFLAGDTSHPQSKEIYEELGVLVAKM 564

Query: 416 KNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCH 475
           K  GY  ET S + D+EEE+KE  +  HSEKLA+ F L+ T+    IRI KN+R+C DCH
Sbjct: 565 KELGYVPETDSALHDVEEEDKEGHLAVHSEKLAIVFALLNTQEYQ-IRITKNLRVCGDCH 623

Query: 476 SAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            A KL+SK+ +R+I +RD   +HHF+DG CSC +YW
Sbjct: 624 IAAKLISKIVEREIIVRDTNRFHHFKDGVCSCGDYW 659



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 121/257 (47%), Gaps = 16/257 (6%)

Query: 94  RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153
           +VF++M  R++V + V+I  +  N R  + L +FREM +    P++     +L AC+   
Sbjct: 74  KVFDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSE 133

Query: 154 ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIF 213
            L YG  ++  + K  +  +  +   LI MY KCG +  A +VF     KDV ++ S + 
Sbjct: 134 NLRYGLLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVA 193

Query: 214 GLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIK 273
           G A N    +A E+   M+  G  PD  +  +++ A ++     +   Y   +F V+  +
Sbjct: 194 GYAHNMRFDDALEICREMEDYGQKPDGCTMASLMPAVANTS--SENVLYVEKIF-VNLER 250

Query: 274 PELDHYACMVDLLGRAGLLEEAENFIASMP---MKPDNVIWGTLLGAC----------RV 320
             L  +  M+ +  +  L  +A +    M    ++PD + + ++L AC          R+
Sbjct: 251 KNLISWNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLSALLLGRRI 310

Query: 321 HRNAEMGQRIGNMLIES 337
           H   E  +   N+L+E+
Sbjct: 311 HEYVEKKKLCPNLLLEN 327



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 57/138 (41%), Gaps = 2/138 (1%)

Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
           L+  YA CG   L  +VF    D++V  Y   I     N    +   +F  M + G  PD
Sbjct: 59  LMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPD 118

Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI 299
           + +Y  VL ACS    +  G      +  V G+   L     ++ + G+ G L EA    
Sbjct: 119 NYTYPCVLKACSCSENLRYGLLIHGDVLKV-GLDFNLFVGNGLIAMYGKCGCLFEARRVF 177

Query: 300 ASMPMKPDNVIWGTLLGA 317
             M  K D V W +++  
Sbjct: 178 DEMIWK-DVVSWNSMVAG 194


>gi|357111691|ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Brachypodium distachyon]
          Length = 598

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 210/510 (41%), Positives = 321/510 (62%), Gaps = 8/510 (1%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDES-DDLDVVSWNSMINGYVRNGEILEGLKLFDKM 68
           D F  N++++ ++   R R A  +        D  ++  ++    R   +  G  L  + 
Sbjct: 89  DPFSLNTVLRIFASSARPRVALALHRRHLAPPDTHTYPPLLQACARLLALRYGEGLHAEA 148

Query: 69  PQRNDVSWNSILGGLVRF----GSVDDACRVFNQMP--KRSLVSWVVLISGFAQNGRPKE 122
            +   VS   +   LV      G  + A RVF+++P  +R+LVSW  +++GFA NGRP E
Sbjct: 149 CKNGLVSLVFVKNSLVHLYGACGLFESAHRVFDEIPPPERNLVSWNSVLNGFAANGRPNE 208

Query: 123 ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182
            L +FREM  ++  P+   +VS+L+ACA++G L  G  V+ ++ K  +  ++    ALID
Sbjct: 209 VLTVFREMLEVEFAPDGFTVVSVLTACAEIGVLALGRRVHVFVAKVGLVGNAHAGNALID 268

Query: 183 MYAKCGSIDLAMQVFHSYG-DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
           +YAKCG +D A ++F   G  + V ++TS I GLA+NG  ++A +LF  M+ + + P  I
Sbjct: 269 LYAKCGGVDDARKMFGEMGVGRTVVSWTSLIVGLAVNGFGMDALQLFSMMEREKLMPTEI 328

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
           + + VL ACSH G V+ GF YF  M   +GI P ++H  CMVDLLGRAG +EEA N+I +
Sbjct: 329 TMVGVLYACSHCGLVDDGFRYFDQMKAEYGITPRIEHLGCMVDLLGRAGRVEEAHNYITT 388

Query: 302 MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361
           MP++P+ V+W TLLGAC +H+  E+G+     L+E D  H G Y+LLSN+Y    +  + 
Sbjct: 389 MPLEPNAVVWRTLLGACAMHKKLEIGEAAWARLVELDPGHSGDYVLLSNLYAGVGRWADV 448

Query: 362 EEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYN 421
             +RKTM    +++ PG SL+EL   V+EF+ GDRSH +T +IY+   +I ++++  GY 
Sbjct: 449 HVLRKTMVTHGVRKNPGHSLVELRNSVYEFVMGDRSHPETDQIYEMLGDIAERLRRQGYI 508

Query: 422 VETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLV 481
             T +V+ DIE+EEKE+ + YHSE+LA+AF L+ + PG+ IRIVKN+R+C DCH A+KL+
Sbjct: 509 PHTSNVLADIEDEEKESALNYHSERLAIAFALLKSLPGTPIRIVKNLRVCGDCHMAIKLI 568

Query: 482 SKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           SKV+ R+I +RDR  +HHF+ G+CSC +YW
Sbjct: 569 SKVYDREIIVRDRSRFHHFKGGACSCKDYW 598



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 107/235 (45%), Gaps = 47/235 (20%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDE--SDDLDVVSWNSMINGYVRNGEILEG 61
           KN     VFVKNSL+  Y  CG    A  VFDE    + ++VSWNS++NG+  NG   E 
Sbjct: 150 KNGLVSLVFVKNSLVHLYGACGLFESAHRVFDEIPPPERNLVSWNSVLNGFAANGRPNEV 209

Query: 62  LKLFDKMPQ---------------------------------------RNDVSWNSILGG 82
           L +F +M +                                        N  + N+++  
Sbjct: 210 LTVFREMLEVEFAPDGFTVVSVLTACAEIGVLALGRRVHVFVAKVGLVGNAHAGNALIDL 269

Query: 83  LVRFGSVDDACRVFNQMP-KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
             + G VDDA ++F +M   R++VSW  LI G A NG   +AL LF  M+   L P    
Sbjct: 270 YAKCGGVDDARKMFGEMGVGRTVVSWTSLIVGLAVNGFGMDALQLFSMMEREKLMPTEIT 329

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKK---CIKLDSILCAALIDMYAKCGSIDLA 193
           +V +L AC+  G +D G   +  ++ +     +++ + C  ++D+  + G ++ A
Sbjct: 330 MVGVLYACSHCGLVDDGFRYFDQMKAEYGITPRIEHLGC--MVDLLGRAGRVEEA 382



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 17/183 (9%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESD-DLDVVSWNSMINGYVRNGEILE 60
           V K     +    N+LI  Y+ CG V DAR +F E      VVSW S+I G   NG  ++
Sbjct: 251 VAKVGLVGNAHAGNALIDLYAKCGGVDDARKMFGEMGVGRTVVSWTSLIVGLAVNGFGMD 310

Query: 61  GLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVV-----LI 111
            L+LF  M +      +++   +L      G VDD  R F+QM     ++  +     ++
Sbjct: 311 ALQLFSMMEREKLMPTEITMVGVLYACSHCGLVDDGFRYFDQMKAEYGITPRIEHLGCMV 370

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK 171
               + GR +EA      + ++ LEPN+ +  +LL ACA    L+ G   ++    + ++
Sbjct: 371 DLLGRAGRVEEA---HNYITTMPLEPNAVVWRTLLGACAMHKKLEIGEAAWA----RLVE 423

Query: 172 LDS 174
           LD 
Sbjct: 424 LDP 426


>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/516 (41%), Positives = 318/516 (61%), Gaps = 7/516 (1%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VVK     ++++ N L+  Y  C  +  AR V DE    D+VSWNSM+ GY +NG   + 
Sbjct: 163 VVKLGLDMNLYIGNGLVSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNGRFNDA 222

Query: 62  LKLFDKMPQ---RNDVSWNSILGGLVRFGSVDDACRV---FNQMPKRSLVSWVVLISGFA 115
           LKL  +M     + D      L   V   S D+   V   F ++ ++SL+SW V+I+ + 
Sbjct: 223 LKLCREMEDLKLKPDAGTMGSLLPAVTNTSCDNVLYVKDMFVKLKEKSLISWNVMIAVYV 282

Query: 116 QNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI 175
            N  P EA+ L+ +MQ   +EP++  + S+L AC  L A   G  ++ Y+++K ++ + +
Sbjct: 283 NNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPACGDLSAAVLGRRIHEYVERKKLRPNLL 342

Query: 176 LCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG 235
           L  ALIDMYAKCG +  A  VF     +DV ++TS I    M+G   +A  LF+ M+  G
Sbjct: 343 LENALIDMYAKCGCLKEARAVFDQMMFRDVVSWTSMISAYGMSGQGKDAVALFKKMRDSG 402

Query: 236 ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA 295
            +PD I++++VL+ACSH G V++G Y F+ M + +GI P ++HY CMVDLLGRAG ++EA
Sbjct: 403 FTPDWIAFVSVLAACSHAGLVDEGRYCFNLMAE-YGITPGIEHYNCMVDLLGRAGKIDEA 461

Query: 296 ENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVET 355
            +    MPM+P+  +WG+LL ACRV+ +  +     + L +      G Y+LLSNIY + 
Sbjct: 462 YHLTRQMPMEPNERVWGSLLSACRVYSSMNIALLAADHLFQLAPEQSGYYVLLSNIYAKA 521

Query: 356 LKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKI 415
            + ++ E VR  M  + IK+ PG S +E++  V+ FLAGD+SH +++EIY+    +V ++
Sbjct: 522 GRWQDVETVRSIMNSKGIKKIPGNSNVEINDHVYTFLAGDQSHTQSKEIYKALGVLVGRM 581

Query: 416 KNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCH 475
           K  GY  ET S + D+EEE+KE  +  HSEKLA+ F ++ TKPGS IRI KNIR+C DCH
Sbjct: 582 KELGYMPETDSALHDVEEEDKECHLAVHSEKLAIVFAILNTKPGSTIRITKNIRVCGDCH 641

Query: 476 SAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            A KL+SK+ +R+I IRD   +HHF DG CSC +YW
Sbjct: 642 VATKLISKIAEREIIIRDTHRFHHFRDGVCSCGDYW 677



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 140/340 (41%), Gaps = 74/340 (21%)

Query: 17  LIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRN---- 72
           L++ Y+ CG     R +FDE  D +VV +N MI  YV NG   + L +F  M  +     
Sbjct: 77  LMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSYVNNGLYQDALLVFKTMANQGFYPD 136

Query: 73  -----------DVSWN-----SILGGLVRFGS-------------------VDDACRVFN 97
                       VS N      I G +V+ G                    +D A RV +
Sbjct: 137 NYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNLYIGNGLVSMYGKCKWLDAARRVLD 196

Query: 98  QMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDY 157
           +MP R +VSW  +++G+AQNGR  +AL L REM+ L L+P++  + SLL A         
Sbjct: 197 EMPGRDMVSWNSMVAGYAQNGRFNDALKLCREMEDLKLKPDAGTMGSLLPAVTN------ 250

Query: 158 GNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAM 217
                                        C ++     +F    +K + ++   I     
Sbjct: 251 ---------------------------TSCDNVLYVKDMFVKLKEKSLISWNVMIAVYVN 283

Query: 218 NGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELD 277
           N    EA +L+  M+  G+ PD++S  +VL AC  L     G    H   +   ++P L 
Sbjct: 284 NAMPNEAVDLYLQMQVHGVEPDAVSISSVLPACGDLSAAVLG-RRIHEYVERKKLRPNLL 342

Query: 278 HYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
               ++D+  + G L+EA      M M  D V W +++ A
Sbjct: 343 LENALIDMYAKCGCLKEARAVFDQM-MFRDVVSWTSMISA 381



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 130/276 (47%), Gaps = 11/276 (3%)

Query: 63  KLFDKMPQRNDVSWNSILG-GLVR-FGSVDDAC---RVFNQMPKRSLVSWVVLISGFAQN 117
           KL  K+    ++  N  LG  L+R + +  + C    +F+++  +++V + V+I  +  N
Sbjct: 56  KLHSKILIDQNLHPNPSLGIKLMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSYVNN 115

Query: 118 GRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILC 177
           G  ++AL +F+ M +    P++     +L AC+  G L  G  ++  + K  + ++  + 
Sbjct: 116 GLYQDALLVFKTMANQGFYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNLYIG 175

Query: 178 AALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGIS 237
             L+ MY KC  +D A +V      +D+ ++ S + G A NG   +A +L   M+   + 
Sbjct: 176 NGLVSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNGRFNDALKLCREMEDLKLK 235

Query: 238 PDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAEN 297
           PD+ +  ++L A ++         Y   MF V   +  L  +  M+ +     +  EA +
Sbjct: 236 PDAGTMGSLLPAVTNTSC--DNVLYVKDMF-VKLKEKSLISWNVMIAVYVNNAMPNEAVD 292

Query: 298 FIASMP---MKPDNVIWGTLLGACRVHRNAEMGQRI 330
               M    ++PD V   ++L AC     A +G+RI
Sbjct: 293 LYLQMQVHGVEPDAVSISSVLPACGDLSAAVLGRRI 328


>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 633

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 203/456 (44%), Positives = 297/456 (65%), Gaps = 8/456 (1%)

Query: 64  LFDKM-PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKE 122
           LFD M P  + VS  ++L    + G +DDA  +F+ +P++ LV W  ++ G+ Q+GRP E
Sbjct: 178 LFDGMRPDPHVVSVTAMLSCYAKMGQLDDARGLFDALPRKDLVCWNAMMDGYTQHGRPSE 237

Query: 123 ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI----QKKCIKLDSILCA 178
           AL LFR+M    +EP+   +V  LSA AQLG  + G W++S++    ++  ++L++ +  
Sbjct: 238 ALRLFRQMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVANGGRRARVRLNARVGT 297

Query: 179 ALIDMYAKCGSIDLAMQVFHSYG---DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG 235
           AL+DMY KCGS++ A+ VF   G   D+DV A+ + I G AM+G S EA E F  ++++G
Sbjct: 298 ALVDMYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMHGRSREALEAFGQLRAQG 357

Query: 236 ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA 295
           + P  I++I VL+ACSH G V++G   F +M + +GI P+++HY CMVDLLGRAG +EEA
Sbjct: 358 LWPTDITFIGVLNACSHSGLVDEGRALFAAMEEEYGIVPKVEHYGCMVDLLGRAGRVEEA 417

Query: 296 ENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVET 355
            + + SM  KPD  +W +LLGACR+H+N  +GQR+ + L+ +   + G Y+LLSN+Y   
Sbjct: 418 FDLVQSMKAKPDAAMWASLLGACRLHKNLALGQRVADYLVGNGLANSGTYVLLSNMYAAA 477

Query: 356 LKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKI 415
            K      VR  MR   +++ PGCS +E+   V EF+AGDRSH ++ EIY   EE+    
Sbjct: 478 GKWREVGRVRSMMRASGVQKEPGCSAVEVGRRVVEFVAGDRSHPRSAEIYAKLEEVNSIA 537

Query: 416 KNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCH 475
           +  G+   T  V+ D+++  KE  +  HSEKLALAFGLI T P + I+IVKN+R C+DCH
Sbjct: 538 RARGHVPHTELVLHDLDDAAKERALAVHSEKLALAFGLISTPPRTGIKIVKNLRACADCH 597

Query: 476 SAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           + +KLVS+   RKI  RDR  +HHF DGSCSC +YW
Sbjct: 598 AVLKLVSEATGRKIVFRDRNRFHHFVDGSCSCGDYW 633


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/537 (39%), Positives = 305/537 (56%), Gaps = 40/537 (7%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQR--- 71
           N++I  Y+  GR+  AR +FDE    D  SWN+ I+GYV + +  E L+LF  M +    
Sbjct: 157 NTMIVGYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREALELFRVMQRHERS 216

Query: 72  -------------------------------------NDVSWNSILGGLVRFGSVDDACR 94
                                                ++V W+++L    + GS+D+A  
Sbjct: 217 SSNKFTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARG 276

Query: 95  VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA 154
           +F+QM  R +VSW  +I    ++GR +E   LFR++    + PN      +L+ACA   A
Sbjct: 277 IFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAA 336

Query: 155 LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFG 214
              G  V+ Y+        S   +AL+ MY+KCG+  +A +VF+     D+ ++TS I G
Sbjct: 337 EHLGKEVHGYMMHAGYDPGSFAISALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVG 396

Query: 215 LAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP 274
            A NG   EA   FE +   G  PD ++Y+ VLSAC+H G V+KG  YFHS+ + HG+  
Sbjct: 397 YAQNGQPDEALHFFELLLQSGTKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMH 456

Query: 275 ELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNML 334
             DHYAC++DLL R+G  +EAEN I +MP+KPD  +W +LLG CR+H N E+ +R    L
Sbjct: 457 TADHYACVIDLLARSGRFKEAENIIDNMPVKPDKFLWASLLGGCRIHGNLELAKRAAKAL 516

Query: 335 IESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAG 394
            E +  +   YI L+NIY           VRK M    I + PG S IE+   VH FL G
Sbjct: 517 YEIEPENPATYITLANIYANAGLWSEVANVRKDMDNMGIVKKPGKSWIEIKRQVHVFLVG 576

Query: 395 DRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLI 454
           D SH KT +I++F  E+ KKIK  GY  +T  V+ D+EEE+KE  + YHSEKLA+ FG+I
Sbjct: 577 DTSHPKTSDIHEFLGELSKKIKEEGYVPDTNFVLHDVEEEQKEQNLVYHSEKLAVVFGII 636

Query: 455 CTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            T PG+ I++ KN+R C DCH+A+K +SK+ +RKI++RD   +H FEDGSCSC +YW
Sbjct: 637 STPPGTPIKVFKNLRTCVDCHTAIKYISKIVQRKITVRDSNRFHCFEDGSCSCKDYW 693



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 133/345 (38%), Gaps = 84/345 (24%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++     D  V ++L+  Y  CG + +AR +FD+  D DVVSW +MI+    +G   EG
Sbjct: 246 LIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEG 305

Query: 62  LKLFDKMPQR----NDVSWNSILGGLV--------------------------------- 84
             LF  + Q     N+ ++  +L                                     
Sbjct: 306 FLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFAISALVHM 365

Query: 85  --RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G+   A RVFN+M +  LVSW  LI G+AQNG+P EAL  F  +     +P+    
Sbjct: 366 YSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQSGTKPDQVTY 425

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           V +LSAC   G +D G                                   ++ FHS  +
Sbjct: 426 VGVLSACTHAGLVDKG-----------------------------------LEYFHSIKE 450

Query: 203 K-----DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVE 257
           K         Y   I  LA +G   EA  + +NM    + PD   + ++L  C   G +E
Sbjct: 451 KHGLMHTADHYACVIDLLARSGRFKEAENIIDNMP---VKPDKFLWASLLGGCRIHGNLE 507

Query: 258 KGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM 302
                  +++++    P    Y  + ++   AGL  E  N    M
Sbjct: 508 LAKRAAKALYEIEPENPAT--YITLANIYANAGLWSEVANVRKDM 550



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 113/265 (42%), Gaps = 48/265 (18%)

Query: 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD 173
             Q  R KEA+ L   +   D  P++ +  +L++AC +  AL+ G  V+++ +       
Sbjct: 65  LCQQKRVKEAVEL---LHRTDHRPSARVYSTLIAACVRHRALELGRRVHAHTKASNFVPG 121

Query: 174 SILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKS 233
             +   L+DMYAKCGS+  A  +F   G +D+ ++ + I G A  G   +A +LF+ M  
Sbjct: 122 VFISNRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQ 181

Query: 234 KGISPDSISYIAVLSACSHLGWVEKGFYYFHSMF-------------------------- 267
           +    D+ S+ A +S         +    F  M                           
Sbjct: 182 R----DNFSWNAAISGYVTHNQPREALELFRVMQRHERSSSNKFTLSSALAASAAIPCLR 237

Query: 268 ---DVHG--IKPELDH----YACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
              ++HG  I+ EL+     ++ ++DL G+ G L+EA      M  + D V W T+    
Sbjct: 238 LGKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDR-DVVSWTTM---- 292

Query: 319 RVHRNAEMGQRIGNMLIESDQNHDG 343
            +HR  E G+R    L+  D    G
Sbjct: 293 -IHRCFEDGRREEGFLLFRDLMQSG 316


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 210/547 (38%), Positives = 321/547 (58%), Gaps = 40/547 (7%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG-- 61
           +  F Y V V  +++  Y  CG VR AR VF      +VVSWN+MI+GY +NGE  E   
Sbjct: 271 RAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFA 330

Query: 62  --LKLFDKMPQRNDVSW-----------------------------------NSILGGLV 84
             LK+ D+  +  +VS                                    NS++    
Sbjct: 331 TFLKMLDEGVEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYS 390

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
           +   VD A  VF  +  +++V+W  +I G+AQNG   EAL LF EMQS D++P+S  LVS
Sbjct: 391 KCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVS 450

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           +++A A L       W++    +  +  +  +C ALID +AKCG+I  A ++F    ++ 
Sbjct: 451 VITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERH 510

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           V  + + I G   NGH  EA +LF  M++  + P+ I++++V++ACSH G VE+G YYF 
Sbjct: 511 VITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFE 570

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
           SM + +G++P +DHY  MVDLLGRAG L++A  FI  MP+KP   + G +LGACR+H+N 
Sbjct: 571 SMKENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITVLGAMLGACRIHKNV 630

Query: 325 EMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIEL 384
           E+G++  + L + D +  G ++LL+N+Y      +    VR  M K+ I++ PGCSL+EL
Sbjct: 631 ELGEKTADELFDLDPDDGGYHVLLANMYASASMWDKVARVRTAMEKKGIQKTPGCSLVEL 690

Query: 385 DGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHS 444
              VH F +G  +H +++ IY + E +  ++K  GY  +T S+  D+EE+ KE ++  HS
Sbjct: 691 RNEVHTFYSGSTNHPQSKRIYAYLETLGDEMKAAGYVPDTNSI-HDVEEDVKEQLLSSHS 749

Query: 445 EKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGS 504
           E+LA+AFGL+ T+ G+ I I KN+R+C DCH A K +S V  R+I +RD + +HHF++G 
Sbjct: 750 ERLAIAFGLLNTRHGTAIHIRKNLRVCGDCHEATKYISLVTGREIIVRDLRRFHHFKNGI 809

Query: 505 CSCLEYW 511
           CSC +YW
Sbjct: 810 CSCGDYW 816



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 104/390 (26%), Positives = 175/390 (44%), Gaps = 72/390 (18%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRN----- 55
           MV+ N F  ++F   +++  Y+ C ++ DA  +F+     D+VSWN+++ GY +N     
Sbjct: 167 MVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARR 226

Query: 56  -----------GEILEGLKLFDKMPQRNDVS-----------------------WNSILG 81
                      G+  + + L   +P   D+                          ++L 
Sbjct: 227 AVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLD 286

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + GSV  A  VF  M  R++VSW  +I G+AQNG  +EA A F +M    +EP +  
Sbjct: 287 TYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVS 346

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           ++  L ACA LG L+ G +V+  + +K I  D  +  +LI MY+KC  +D+A  VF +  
Sbjct: 347 MMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLK 406

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG------W 255
            K V  + + I G A NG   EA  LF  M+S  I PDS + ++V++A + L       W
Sbjct: 407 HKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKW 466

Query: 256 V---------EKGFYYFHSMFDVHG---------------IKPELDHYACMVDLLGRAGL 291
           +         +K  +   ++ D H                 +  +  +  M+D  G  G 
Sbjct: 467 IHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGH 526

Query: 292 LEEAENFIASM---PMKPDNVIWGTLLGAC 318
             EA +    M    +KP+ + + +++ AC
Sbjct: 527 GREALDLFNEMQNGSVKPNEITFLSVIAAC 556



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 149/307 (48%), Gaps = 40/307 (13%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +++KN F  +   +  LI  +     + +A  VF+  +    V +++M+ GY +N  + +
Sbjct: 66  LIIKNGFYNEHLFQTKLISLFCKFNSITEAARVFEPVEHKLDVLYHTMLKGYAKNSTLRD 125

Query: 61  GLKLFDKMP---------------------------------------QRNDVSWNSILG 81
            ++ +++M                                        Q N  +  +++ 
Sbjct: 126 AVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIHGMVITNGFQSNLFAMTAVVN 185

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              +   ++DA ++F +MP+R LVSW  +++G+AQNG  + A+ +  +MQ    +P+S  
Sbjct: 186 LYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSIT 245

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           LVS+L A A L AL  G  ++ Y  +   +    +  A++D Y KCGS+  A  VF    
Sbjct: 246 LVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMS 305

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
            ++V ++ + I G A NG S EAF  F  M  +G+ P ++S +  L AC++LG +E+G  
Sbjct: 306 SRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERG-R 364

Query: 262 YFHSMFD 268
           Y H + D
Sbjct: 365 YVHRLLD 371



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/231 (22%), Positives = 107/231 (46%), Gaps = 2/231 (0%)

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
           +F S+ +A RVF  +  +  V +  ++ G+A+N   ++A+  +  M+  ++ P       
Sbjct: 88  KFNSITEAARVFEPVEHKLDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTY 147

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           LL    +   L  G  ++  +     + +     A++++YAKC  I+ A ++F     +D
Sbjct: 148 LLQLSGENLDLRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRD 207

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           + ++ + + G A NG +  A ++   M+  G  PDSI+ ++VL A + L  +  G     
Sbjct: 208 LVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHG 267

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
             F   G +  ++    M+D   + G +  A      M  + + V W T++
Sbjct: 268 YAFRA-GFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSR-NVVSWNTMI 316


>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
          Length = 574

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/534 (40%), Positives = 328/534 (61%), Gaps = 24/534 (4%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSV--CGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEIL 59
           ++K     D    + L+ F +    G +  AR VFD     +   WN+MI GY  + E  
Sbjct: 41  MLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPE 100

Query: 60  EGLKLFDKM----PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVV----LI 111
           E L L+  M       N  ++  +L       ++++  ++   + K    S +     L+
Sbjct: 101 EALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLL 160

Query: 112 SGFAQNG--------------RPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDY 157
           + ++++G              R  EAL LF  MQ+  ++ ++  LVS L ACA LG LD 
Sbjct: 161 NVYSKSGDIKSARLLFDQVDQRDTEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQ 220

Query: 158 GNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAM 217
           G W+++YI+K  I++D IL   LIDMYAKCG ++ A++VF    +K VS +T+ I G A+
Sbjct: 221 GKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAI 280

Query: 218 NGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELD 277
           +G   EA E F  M++ G+ P+ +++  +L+ACSH G V +    F SM  +HG KP ++
Sbjct: 281 HGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIE 340

Query: 278 HYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIES 337
           HY CMVDLLGRAGLL+EAE  I +MP+KP+  IWG LL AC +H N E+G++IG +LI+ 
Sbjct: 341 HYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQV 400

Query: 338 DQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRS 397
           D  H GRYI L++I+    +   A  VR+ M+++ + + PGCS+I ++G  HEFLAGD S
Sbjct: 401 DPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDES 460

Query: 398 HEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTK 457
           H + +EI    E+IV++++  GY  +   ++ D+E++EKET I +HSEKLA+ FGLI TK
Sbjct: 461 HPQIKEIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTFGLISTK 520

Query: 458 PGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           PG  IRIVKN+R+C DCH+ +KL+SKV+ R+I +RDR  +H F+DG+C+C +YW
Sbjct: 521 PGMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 574


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 206/548 (37%), Positives = 316/548 (57%), Gaps = 39/548 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +K     D FV  +LI  YS  G++ +A  +F   D  D+ SWN+M++G+  +    E L
Sbjct: 426 LKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREAL 485

Query: 63  KLFDKMPQRND-------VSWNSILGGLVRF----------------------------- 86
           +LF  M +R +        +     G LVR                              
Sbjct: 486 RLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMY 545

Query: 87  ---GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
              G +  A +VFNQ+P    V+W  +ISG  +NG  ++AL  + +M+   ++P+     
Sbjct: 546 LKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFA 605

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           +L+ AC+ L AL+ G  +++ I K     D  +  +L+DMYAKCG+I+ A  +F     +
Sbjct: 606 TLVKACSLLTALEQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTR 665

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
            V+ + + I GLA +G++ EA   F  MKS+G++PD +++I VLSACSH G     +  F
Sbjct: 666 SVALWNAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSDAYKNF 725

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
            SM   +G++PE++HY+C+VD L RAG ++EAE  ++SMP +    ++ TLL ACRV  +
Sbjct: 726 DSMQKTYGVEPEIEHYSCLVDALSRAGHIQEAEKVVSSMPFEASATMYRTLLNACRVQGD 785

Query: 324 AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE 383
            E G+R+   L   D +    Y+LLSNIY    + ENA   R  M++  +K+ PG S I+
Sbjct: 786 KETGERVAEKLFTMDPSDSAAYVLLSNIYAAANQWENAVSARNMMKRVNVKKEPGFSWID 845

Query: 384 LDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYH 443
           +   VH F+AGDRSHE+T  IY   E ++K+IK  GY  +T   + DIEEE+KE+ + YH
Sbjct: 846 MKNKVHLFVAGDRSHEETDLIYNKVEYVMKRIKEEGYVPDTEFALVDIEEEDKESALSYH 905

Query: 444 SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
           SEKLA+A+GL+ T P + +R++KN+R+C DCH+A+K +S VF+R+I +RD   +HHF  G
Sbjct: 906 SEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHNAIKYISNVFQREIVLRDANRFHHFRSG 965

Query: 504 SCSCLEYW 511
            CSC +YW
Sbjct: 966 ICSCGDYW 973



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 151/330 (45%), Gaps = 60/330 (18%)

Query: 38  DDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQR----NDVSWNSIL------------- 80
           DD DV  WN  ++ Y++ GE  E +  F  M +     + +++  IL             
Sbjct: 258 DDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGK 317

Query: 81  ---GGLVRFG-------------------SVDDACRVFNQMPKRSLVSWVVLISGFAQNG 118
              G +VRFG                   SV+ A R+F QM +  L+SW  +ISG A++G
Sbjct: 318 QIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSG 377

Query: 119 RPKEALALFREMQSLDLEPNSAILVSLLSACAQLG-ALDYGNWVYSYIQKKCIKLDSILC 177
             + +L LF ++    L P+   + S+L AC+ L  +   G  V++   K  I LDS + 
Sbjct: 378 LEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVS 437

Query: 178 AALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGIS 237
            ALID+Y+K G ++ A  +FH+    D++++ + + G  ++ +  EA  LF  M  +G  
Sbjct: 438 TALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEK 497

Query: 238 PDSISYIAVLSACSHLGWVEKG---------FYYFHSMFDVHGIKPELDHYACMVDLLGR 288
            D I++     A   L  +++G           + + +F + GI          +D+  +
Sbjct: 498 ADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGI----------LDMYLK 547

Query: 289 AGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
            G ++ A      +P  PD+V W T++  C
Sbjct: 548 CGEMKSARKVFNQIP-SPDDVAWTTVISGC 576



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/363 (24%), Positives = 156/363 (42%), Gaps = 48/363 (13%)

Query: 7   FAYDVFVK--NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKL 64
           F +D FV   NS I  Y   G V  AR +F +  ++D++SWN++I+G  R+G     L+L
Sbjct: 326 FGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRL 385

Query: 65  FDKMPQR----NDVSWNSIL----------------------GGLV-------------- 84
           F  + +     +  +  S+L                       G+V              
Sbjct: 386 FIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYS 445

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
           + G +++A  +F+      L SW  ++ GF  +   +EAL LF  M     + +     +
Sbjct: 446 KGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFAN 505

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
              A   L  L  G  +++ + K     D  + + ++DMY KCG +  A +VF+     D
Sbjct: 506 AAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPD 565

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
             A+T+ I G   NG   +A   +  M+  G+ PD  ++  ++ ACS L  +E+G    H
Sbjct: 566 DVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQG-KQIH 624

Query: 265 SMFDVHGIKPELDHY--ACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           +  ++  +    D +    +VD+  + G +E+A      M  +    +W  ++     H 
Sbjct: 625 A--NIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTR-SVALWNAMIVGLAQHG 681

Query: 323 NAE 325
           NAE
Sbjct: 682 NAE 684



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 91/352 (25%), Positives = 155/352 (44%), Gaps = 13/352 (3%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNG---EIL 59
           VK    +DVFV  +L+  Y+   R+R+AR +FD     DVV WN M+  YV  G   E+L
Sbjct: 149 VKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVL 208

Query: 60  EGLKLFDKMPQRND-VSWNSILGGLVRFGSVDD--------ACRVFNQMPKRSLVSWVVL 110
                F +   R D VS  +IL G+ +    +         A ++F       +  W   
Sbjct: 209 GLFSAFHRSGLRPDCVSVRTILMGVGKKTVFERELEQVRAYATKLFVCDDDSDVTVWNKT 268

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCI 170
           +S + Q G   EA+  FR+M    +  +S   + +LS  A L  L+ G  ++  + +   
Sbjct: 269 LSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGW 328

Query: 171 KLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFEN 230
                +  + I+MY K GS++ A ++F    + D+ ++ + I G A +G    +  LF +
Sbjct: 329 DQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFID 388

Query: 231 MKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAG 290
           +   G+ PD  +  +VL ACS L          H+     GI  +      ++D+  + G
Sbjct: 389 LLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGG 448

Query: 291 LLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD 342
            +EEAE    +     D   W  ++    V  N     R+ +++ E  +  D
Sbjct: 449 KMEEAELLFHNQD-GFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKAD 499



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 109/239 (45%), Gaps = 40/239 (16%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGE--- 57
           +V+K  F YD+FV + ++  Y  CG ++ AR VF++    D V+W ++I+G V NGE   
Sbjct: 525 VVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQ 584

Query: 58  ----------------------ILEGLKLFDKMPQRNDVSWN--------------SILG 81
                                 +++   L   + Q   +  N              S++ 
Sbjct: 585 ALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFVMTSLVD 644

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G+++DA  +F +M  RS+  W  +I G AQ+G  +EAL  F EM+S  + P+   
Sbjct: 645 MYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVT 704

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKK-CIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
            + +LSAC+  G        +  +QK   ++ +    + L+D  ++ G I  A +V  S
Sbjct: 705 FIGVLSACSHSGLTSDAYKNFDSMQKTYGVEPEIEHYSCLVDALSRAGHIQEAEKVVSS 763



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/349 (21%), Positives = 146/349 (41%), Gaps = 44/349 (12%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFD--ESDDLDVVSWNSMINGYVRNGEI 58
           ++V +    D +V N+LI  Y+ CG +  AR +FD     D D+V++N+++  Y   GE+
Sbjct: 38  VIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAAYAHTGEL 97

Query: 59  ------LEGLKLFDKMPQRNDVSWNSILGGLVR----FGSVDDACRVFNQMPKRSLVSWV 108
                  E   +F  + Q   ++    L  L +    +GS   A         +  + W 
Sbjct: 98  HDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGS-PSASEALQGYAVKIGLQWD 156

Query: 109 VLISG-----FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYS 163
           V ++G     +A+  R +EA  LF  M   D+     +   ++ A  ++GA D    ++S
Sbjct: 157 VFVAGALVNIYAKFQRIREARVLFDRMPVRDV----VLWNVMMKAYVEMGAGDEVLGLFS 212

Query: 164 YIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG--------DKDVSAYTSAIFGL 215
              +  ++ D +    ++    K    +  ++   +Y         D DV+ +   +   
Sbjct: 213 AFHRSGLRPDCVSVRTILMGVGKKTVFERELEQVRAYATKLFVCDDDSDVTVWNKTLSSY 272

Query: 216 AMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG--IK 273
              G   EA + F +M    +  DS++YI +LS  + L  +E G         +HG  ++
Sbjct: 273 LQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELG-------KQIHGAVVR 325

Query: 274 PELDHYACM----VDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
              D +  +    +++  +AG +  A      M  + D + W T++  C
Sbjct: 326 FGWDQFVSVANSAINMYVKAGSVNYARRMFGQMK-EVDLISWNTVISGC 373


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/547 (38%), Positives = 329/547 (60%), Gaps = 37/547 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +VK+ F  +V+V+++L+  Y+ CG +++A+ + +  +D DVVSWNS++ G+VR+G   E 
Sbjct: 291 IVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEA 350

Query: 62  LKLFDKMPQRN----DVSWNSILG-------------GLV-------------------- 84
           L+LF  M  RN    D ++ S+L              GL+                    
Sbjct: 351 LRLFKNMHGRNMKIDDYTFPSVLNCCVVGSINPKSVHGLIIKTGFENYKLVSNALVDMYA 410

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
           + G +D A  VF +M ++ ++SW  L++G+AQN   +E+L +F +M+   + P+  I+ S
Sbjct: 411 KTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVAS 470

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           +LSACA+L  L++G  V+    K  ++    +  +L+ MYAKCG +D A  +F S   KD
Sbjct: 471 ILSACAELTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKD 530

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           V  +T+ I G A NG    + + ++ M S G  PD I++I +L ACSH G V++G  YF 
Sbjct: 531 VITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQ 590

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
            M  V+GIKP  +HYACM+DL GR+G L+EA+  +  M +KPD  +W +LL ACRVH N 
Sbjct: 591 QMNKVYGIKPGPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHENL 650

Query: 325 EMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIEL 384
           E+ +R    L E +  +   Y++LSN+Y  + K  +  ++RK M+ + I + PGCS +E+
Sbjct: 651 ELAERAATNLFELEPMNAMPYVMLSNMYSASRKWNDVAKIRKLMKSKGIVKEPGCSWLEI 710

Query: 385 DGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHS 444
           +  V+ F++ DR H +  EIY   +EI+ +IK  GY  +    + D+++E KE  + YHS
Sbjct: 711 NSRVNTFISDDRGHPREAEIYTKIDEIILRIKEAGYVPDMSFSLHDMDKEGKEVGLAYHS 770

Query: 445 EKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGS 504
           EKLA+AFGL+   P + IRI KN+R+C DCHSAMK +S+VF R I +RD   +HHF +G 
Sbjct: 771 EKLAVAFGLLAAPPSAPIRIFKNLRVCGDCHSAMKYISRVFTRHIILRDSNCFHHFREGE 830

Query: 505 CSCLEYW 511
           CSC +YW
Sbjct: 831 CSCGDYW 837



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/355 (28%), Positives = 174/355 (49%), Gaps = 45/355 (12%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFD--ESDDLDVVSWNSMINGYVRNGEIL 59
           VVKN F  +VFV   L+  Y+ C  V +A ++F   E D  + V W +M+ GY +NG+  
Sbjct: 188 VVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGY 247

Query: 60  EGLKLFDKMPQR----NDVSWNSIL----------------GGLVR--FGS--------- 88
           + ++ F  M  +    N  ++ +IL                G +V+  FGS         
Sbjct: 248 KAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALV 307

Query: 89  --------VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
                   + +A  +   M    +VSW  L+ GF ++G  +EAL LF+ M   +++ +  
Sbjct: 308 DMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDY 367

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
              S+L+ C  +G+++  + V+  I K   +   ++  AL+DMYAK G +D A  VF   
Sbjct: 368 TFPSVLNCCV-VGSINPKS-VHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKM 425

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
            +KDV ++TS + G A N    E+ ++F +M+  G++PD     ++LSAC+ L  +E G 
Sbjct: 426 LEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFG- 484

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
              H  F   G++     Y  +V +  + G L++A+    SM +K D + W  ++
Sbjct: 485 KQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVK-DVITWTAII 538



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 143/273 (52%), Gaps = 6/273 (2%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N ++N   ++G++ +  KLFDKMPQ+++ SWN+++   V  G + +A  +F+    +S +
Sbjct: 69  NQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSI 128

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           +W  +ISG+ + G   EA  LFR M+    + +   L S+L  C+ LG +  G  ++ ++
Sbjct: 129 TWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFV 188

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS--YGDKDVSAYTSAIFGLAMNGHSIE 223
            K   + +  +   L+DMYAKC  +  A  +F    +  K+   +T+ + G A NG   +
Sbjct: 189 VKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYK 248

Query: 224 AFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF-YYFHSMFDVHGIKPELDHYACM 282
           A E F  M ++G+  +  ++  +L+ACS +  + + F    H      G    +   + +
Sbjct: 249 AVEFFRYMHAQGVECNQYTFPTILTACSSV--LARCFGEQVHGFIVKSGFGSNVYVQSAL 306

Query: 283 VDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
           VD+  + G L+ A+N + +M    D V W +L+
Sbjct: 307 VDMYAKCGDLKNAKNMLETME-DDDVVSWNSLM 338



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 159/383 (41%), Gaps = 88/383 (22%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMIN-------------------- 50
           ++  N L+   S  G+V DAR +FD+    D  SWN+MI+                    
Sbjct: 65  IYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSC 124

Query: 51  -----------GYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGS----------- 88
                      GY + G  +E   LF  M      +    LG ++R  S           
Sbjct: 125 KSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMI 184

Query: 89  ----------------------------VDDACRVFN--QMPKRSLVSWVVLISGFAQNG 118
                                       V +A  +F   +  +++ V W  +++G+AQNG
Sbjct: 185 HGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNG 244

Query: 119 RPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCA 178
              +A+  FR M +  +E N     ++L+AC+ + A  +G  V+ +I K     +  + +
Sbjct: 245 DGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQS 304

Query: 179 ALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISP 238
           AL+DMYAKCG +  A  +  +  D DV ++ S + G   +G   EA  LF+NM  + +  
Sbjct: 305 ALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKI 364

Query: 239 DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG--IKPELDHYA----CMVDLLGRAGLL 292
           D  ++ +VL+ C  +G +            VHG  IK   ++Y      +VD+  + G +
Sbjct: 365 DDYTFPSVLNCCV-VGSINPK--------SVHGLIIKTGFENYKLVSNALVDMYAKTGDM 415

Query: 293 EEAENFIASMPMKPDNVIWGTLL 315
           + A      M ++ D + W +L+
Sbjct: 416 DCAYTVFEKM-LEKDVISWTSLV 437



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 106/237 (44%), Gaps = 40/237 (16%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +++K  F     V N+L+  Y+  G +  A  VF++  + DV+SW S++ GY +N    E
Sbjct: 389 LIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEE 448

Query: 61  GLKLFDKM------PQRNDVS---------------------------------WNSILG 81
            LK+F  M      P +  V+                                 +NS++ 
Sbjct: 449 SLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQSVYNSLVA 508

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G +DDA  +F  M  + +++W  +I G+AQNG+ + +L  +  M S    P+   
Sbjct: 509 MYAKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFIT 568

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQK-KCIKLDSILCAALIDMYAKCGSIDLAMQVF 197
            + LL AC+  G +D G   +  + K   IK      A +ID++ + G +D A Q+ 
Sbjct: 569 FIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLFGRSGKLDEAKQLL 625


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/552 (39%), Positives = 323/552 (58%), Gaps = 41/552 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V   S   D     +LI  Y   G + DAR +FDE    DVVSWN+MI+GYV++G   E
Sbjct: 187 LVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEE 246

Query: 61  GLKLFDKMPQRNDV--------------------------SW-------------NSILG 81
            +  F +M + N +                          SW             N+++ 
Sbjct: 247 AIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALID 306

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G  D A  +F+ + ++ ++SW  +I G++     +EALALF  M   +++PN   
Sbjct: 307 MYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVT 366

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKL-DSILCAALIDMYAKCGSIDLAMQVFHSY 200
            + +L ACA LGALD G WV++YI K      ++ L  +LIDMYAKCG I+ A +VF S 
Sbjct: 367 FLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSM 426

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGI-SPDSISYIAVLSACSHLGWVEKG 259
             ++++++ + + G AM+GH+  A  LF  M +KG+  PD I+++ VLSAC+  G V+ G
Sbjct: 427 HSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLG 486

Query: 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACR 319
             YF SM   +GI P+L HY CM+DLL RA   EEAE  + +M M+PD  IWG+LL AC+
Sbjct: 487 HQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLLSACK 546

Query: 320 VHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGC 379
            H   E G+ +   L + +  + G ++LLSNIY    + ++   +R  +  + +K+ PGC
Sbjct: 547 AHGRVEFGEYVAERLFQLEPENAGAFVLLSNIYAGAGRWDDVARIRTRLNDKGMKKVPGC 606

Query: 380 SLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETV 439
           + IE+DG VHEFL GD+ H +   IY+   E+ K ++  G+   T  V++D++EE KE  
Sbjct: 607 TSIEIDGDVHEFLVGDKFHPECNNIYKMLNEVDKLLEENGFVPNTSEVLYDMDEEWKEGA 666

Query: 440 IGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHH 499
           +  HSEKLA++FGLI TKPG+ IRIVKN+R+C +CHSA KL+SK+F R+I  RDR  +HH
Sbjct: 667 LSQHSEKLAISFGLIKTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHH 726

Query: 500 FEDGSCSCLEYW 511
           F+DG CSC + W
Sbjct: 727 FKDGFCSCNDCW 738



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 90/281 (32%), Positives = 155/281 (55%), Gaps = 3/281 (1%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
            S+I+ Y   GE+     +FDK   R+ VS+ +++ G V  G +DDA R+F+++P + +V
Sbjct: 170 TSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVV 229

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           SW  +ISG+ Q+GR +EA+  F EMQ  ++ PN + +V +LSAC    + + G W+ S++
Sbjct: 230 SWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWV 289

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
           +      +  L  ALIDMY KCG  D+A ++F    +KDV ++ + I G +      EA 
Sbjct: 290 RDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEAL 349

Query: 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH-GIKPELDHYACMVD 284
            LFE M    + P+ ++++ +L AC+ LG ++ G  + H+  D +         +  ++D
Sbjct: 350 ALFEVMLRSNVKPNDVTFLGILHACACLGALDLG-KWVHAYIDKNLRNSSNASLWTSLID 408

Query: 285 LLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAE 325
           +  + G +E AE    SM  + +   W  +L    +H +AE
Sbjct: 409 MYAKCGCIEAAERVFRSMHSR-NLASWNAMLSGFAMHGHAE 448


>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 206/497 (41%), Positives = 319/497 (64%), Gaps = 5/497 (1%)

Query: 20  FYSVC---GRVRDARWVFDESDDLDVVSWNSMINGYVRNGEI-LEGLKLFDKMPQRN-DV 74
            Y+ C   G V D+R VF++  + +V+SW ++I  YV++GE   E ++LF KM   + + 
Sbjct: 1   MYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISASVNC 60

Query: 75  SWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD 134
             NS++    R G ++DA + F+ + +++LVS+  ++ G+A+N + +EA  LF E+    
Sbjct: 61  VGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTG 120

Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
           +  ++    SLLS  A +GA+  G  ++  + K   K +  +C ALI MY++CG+I+ A 
Sbjct: 121 IGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAF 180

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
           QVF+   D++V ++TS I G A +G +  A E+F  M   G  P+ I+Y+AVLSACSH+G
Sbjct: 181 QVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVG 240

Query: 255 WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTL 314
            + +G  +F+SM+  HGI P ++HYACMVDLLGR+GLL EA  FI SMP+  D ++W TL
Sbjct: 241 MISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTL 300

Query: 315 LGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIK 374
           LGACRVH N E+G+    M++E + +    YILLSN++    + ++  ++RK+M++R + 
Sbjct: 301 LGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLI 360

Query: 375 RAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEE 434
           +  GCS IE++  VH F  G+ SH +  +IYQ  +++  KIK  GY  +T  V+ DIEEE
Sbjct: 361 KEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEE 420

Query: 435 EKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDR 494
           +KE  +  HSEK+A+AFGLI T     IRI KN+R+C DCH+A+K +S    R+I +RD 
Sbjct: 421 QKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDS 480

Query: 495 KHYHHFEDGSCSCLEYW 511
             +HH ++G CSC +YW
Sbjct: 481 NRFHHIKNGVCSCNDYW 497



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 112/229 (48%), Gaps = 44/229 (19%)

Query: 13  VKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP--- 69
           V NSLI  Y+  GR+ DAR  FD   + ++VS+N++++GY +N +  E   LF+++    
Sbjct: 61  VGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTG 120

Query: 70  ------------------------------------QRNDVSWNSILGGLVRFGSVDDAC 93
                                               + N    N+++    R G+++ A 
Sbjct: 121 IGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAF 180

Query: 94  RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153
           +VFN+M  R+++SW  +I+GFA++G    AL +F +M     +PN    V++LSAC+ +G
Sbjct: 181 QVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVG 240

Query: 154 ALDYGNWVYSYIQKK---CIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
            +  G   ++ + K+     +++   C  ++D+  + G +  AM+  +S
Sbjct: 241 MISEGQKHFNSMYKEHGIVPRMEHYAC--MVDLLGRSGLLVEAMEFINS 287



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 83/166 (50%), Gaps = 12/166 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K  +  +  + N+LI  YS CG +  A  VF+E +D +V+SW SMI G+ ++G     
Sbjct: 151 LLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRA 210

Query: 62  LKLFDKM----PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLIS 112
           L++F KM     + N++++ ++L      G + +  + FN M K       +  +  ++ 
Sbjct: 211 LEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVD 270

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
              ++G   EA+     + S+ L  ++ +  +LL AC   G  + G
Sbjct: 271 LLGRSGLLVEAMEF---INSMPLMADALVWRTLLGACRVHGNTELG 313


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/549 (38%), Positives = 321/549 (58%), Gaps = 40/549 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++  +  D  V+ +L+  Y+ CG ++DA  VF++    +VV+WN+MI  YV++ +    
Sbjct: 439 IIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNA 498

Query: 62  LKLFDKMPQR----NDVSWNSIL-----------GGLVRF-------------------- 86
           L  F  + +     N  ++ SIL           G  V F                    
Sbjct: 499 LATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSM 558

Query: 87  ----GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
               G +  A  +FN MPKR LVSW  +I+GF Q+G+ + A   F+ MQ   ++P+    
Sbjct: 559 FVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITF 618

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
             LL+ACA   AL  G  +++ I +     D ++   LI MY KCGSI+ A QVFH    
Sbjct: 619 TGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPK 678

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           K+V ++TS I G A +G   EA ELF  M+ +G+ PD I+++  LSAC+H G +E+G ++
Sbjct: 679 KNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHH 738

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F SM + + I+P ++HY CMVDL GRAGLL EA  FI  M ++PD+ +WG LLGAC+VH 
Sbjct: 739 FQSMKEFN-IEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHL 797

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           N E+ ++     +E D N +G +++LSNIY      +   ++RK M  R + + PG S I
Sbjct: 798 NVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWI 857

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E+DG VH F + D++H +T+EI+   E +  +++  GY  +TR V+ D+E+ EKE  + Y
Sbjct: 858 EVDGKVHTFYSDDKTHPQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVEDNEKEQALFY 917

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSE+LA+ +GL+ T P + I I KN+R+C DCH+A K +SK+ KR+I  RD   +HHF+D
Sbjct: 918 HSERLAITYGLLKTPPLTPIVISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHHFKD 977

Query: 503 GSCSCLEYW 511
           G CSC ++W
Sbjct: 978 GVCSCGDFW 986



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 106/376 (28%), Positives = 173/376 (46%), Gaps = 41/376 (10%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +++K  +  D+FV  +LI  +  CG + DA  VFD     D+V+W SMI G  R+G   +
Sbjct: 236 LILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQ 295

Query: 61  GLKLFDKMPQR--------------------------------NDVSWNS-------ILG 81
              LF +M +                                  +V W++       IL 
Sbjct: 296 ACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILS 355

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + GS++DA  VF+ +  R++VSW  +I+GFAQ+GR  EA   F +M    +EPN   
Sbjct: 356 MYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVT 415

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
            +S+L AC+   AL  G  +  +I +     D  +  AL+ MYAKCGS+  A +VF    
Sbjct: 416 FMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKIS 475

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
            ++V A+ + I     +     A   F+ +  +GI P+S ++ ++L+ C     +E G  
Sbjct: 476 KQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELG-K 534

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           + H +    G++ +L     +V +    G L  A+N    MP K D V W T++     H
Sbjct: 535 WVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMP-KRDLVSWNTIIAGFVQH 593

Query: 322 RNAEMGQRIGNMLIES 337
              ++      M+ ES
Sbjct: 594 GKNQVAFDYFKMMQES 609



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/359 (27%), Positives = 178/359 (49%), Gaps = 41/359 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           + K+    D+F+ N+LI  Y+ CG    A+ +FD+  + DV SWN ++ GYV++G   E 
Sbjct: 136 IKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEA 195

Query: 62  LKLFDKMPQ--------------------RN------------DVSWNS-------ILGG 82
            KL ++M Q                    RN               W++       ++  
Sbjct: 196 FKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINM 255

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
            ++ G + DA +VF+ +P R LV+W  +I+G A++GR K+A  LF+ M+   ++P+    
Sbjct: 256 HIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAF 315

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           VSLL AC    AL+ G  V++ +++     +  +  A++ MY KCGS++ A++VF     
Sbjct: 316 VSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKG 375

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           ++V ++T+ I G A +G   EAF  F  M   GI P+ ++++++L ACS    +++G   
Sbjct: 376 RNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQI 435

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
              + +  G   +      ++ +  + G L++A      +  K + V W  ++ A   H
Sbjct: 436 QDHIIEA-GYGSDDRVRTALLSMYAKCGSLKDAHRVFEKIS-KQNVVAWNAMITAYVQH 492



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 97/407 (23%), Positives = 197/407 (48%), Gaps = 44/407 (10%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVV----SWNSMINGYVRNGEILEGLKLF 65
           D    N+++   S  G+  +A  V +  D   +     ++++++   ++   + +G +++
Sbjct: 74  DTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIY 133

Query: 66  DKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
           + +     Q +   WN+++    + G+   A ++F+ M ++ + SW +L+ G+ Q+G  +
Sbjct: 134 NHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYE 193

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
           EA  L  +M    ++P+    VS+L+ACA    +D G  +Y+ I K     D  +  ALI
Sbjct: 194 EAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALI 253

Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
           +M+ KCG I  A +VF +   +D+  +TS I GLA +G   +A  LF+ M+ +G+ PD +
Sbjct: 254 NMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKV 313

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA------ 295
           +++++L AC+H   +E+G      M +V G   E+     ++ +  + G +E+A      
Sbjct: 314 AFVSLLRACNHPEALEQGKKVHARMKEV-GWDTEIYVGTAILSMYTKCGSMEDALEVFDL 372

Query: 296 ---ENFIASMPM-------------------------KPDNVIWGTLLGACRVHRNAEMG 327
               N ++   M                         +P+ V + ++LGAC      + G
Sbjct: 373 VKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRG 432

Query: 328 QRIGNMLIESDQNHDGRY-ILLSNIYVETLKGENAEEVRKTMRKRKI 373
           Q+I + +IE+    D R    L ++Y +    ++A  V + + K+ +
Sbjct: 433 QQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNV 479



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 120/234 (51%), Gaps = 39/234 (16%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +++K     D+ V N+L+  +  CG +  A+ +F++    D+VSWN++I G+V++G+   
Sbjct: 539 LIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQV 598

Query: 61  GLKLFDKMPQR----NDVSWNSILG-------------------------------GLV- 84
               F  M +     + +++  +L                                GL+ 
Sbjct: 599 AFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLIS 658

Query: 85  ---RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + GS++DA +VF+++PK+++ SW  +I+G+AQ+GR KEAL LF +MQ   ++P+   
Sbjct: 659 MYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPDWIT 718

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ 195
            V  LSACA  G ++ G   +  +++  I+        ++D++ + G ++ A++
Sbjct: 719 FVGALSACAHAGLIEEGLHHFQSMKEFNIEPRMEHYGCMVDLFGRAGLLNEAVE 772



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 11/157 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++ + +F  DV V   LI  Y+ CG + DA  VF +    +V SW SMI GY ++G   E
Sbjct: 640 LITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKE 699

Query: 61  GLKLFDKMPQRN-DVSWNSILGGL---VRFGSVDDACRVFNQMPKRSLVS----WVVLIS 112
            L+LF +M Q      W + +G L      G +++    F  M + ++      +  ++ 
Sbjct: 700 ALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKEFNIEPRMEHYGCMVD 759

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
            F + G   EA+    +MQ   +EP+S +  +LL AC
Sbjct: 760 LFGRAGLLNEAVEFIIKMQ---VEPDSRVWGALLGAC 793


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/549 (38%), Positives = 321/549 (58%), Gaps = 40/549 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++  +  D  V+ +L+  Y+ CG ++DA  VF++    +VV+WN+MI  YV++ +    
Sbjct: 439 IIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNA 498

Query: 62  LKLFDKMPQR----NDVSWNSIL-----------GGLVRF-------------------- 86
           L  F  + +     N  ++ SIL           G  V F                    
Sbjct: 499 LATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSM 558

Query: 87  ----GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
               G +  A  +FN MPKR LVSW  +I+GF Q+G+ + A   F+ MQ   ++P+    
Sbjct: 559 FVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITF 618

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
             LL+ACA   AL  G  +++ I +     D ++   LI MY KCGSI+ A QVFH    
Sbjct: 619 TGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPK 678

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           K+V ++TS I G A +G   EA ELF  M+ +G+ PD I+++  LSAC+H G +E+G ++
Sbjct: 679 KNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHH 738

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F SM + + I+P ++HY CMVDL GRAGLL EA  FI  M ++PD+ +WG LLGAC+VH 
Sbjct: 739 FQSMKEFN-IEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHL 797

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           N E+ ++     +E D N +G +++LSNIY      +   ++RK M  R + + PG S I
Sbjct: 798 NVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWI 857

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E+DG VH F + D++H +T+EI+   E +  +++  GY  +TR V+ D+E+ EKE  + Y
Sbjct: 858 EVDGKVHTFYSDDKTHPQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVEDNEKEQALFY 917

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSE+LA+ +GL+ T P + I I KN+R+C DCH+A K +SK+ KR+I  RD   +HHF+D
Sbjct: 918 HSERLAITYGLLKTPPLTPIVISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHHFKD 977

Query: 503 GSCSCLEYW 511
           G CSC ++W
Sbjct: 978 GVCSCGDFW 986



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 98/359 (27%), Positives = 179/359 (49%), Gaps = 41/359 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           + K+    D+F++N+LI  Y+ CG    A+ +FD+  + DV SWN ++ GYV++G   E 
Sbjct: 136 IKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEA 195

Query: 62  LKLFDKMPQ--------------------RN------------DVSWNS-------ILGG 82
            KL ++M Q                    RN               W++       ++  
Sbjct: 196 FKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINM 255

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
            ++ G + DA +VF+ +P R LV+W  +I+G A++GR K+A  LF+ M+   ++P+    
Sbjct: 256 HIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAF 315

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           VSLL AC    AL+ G  V++ +++     +  +  A++ MY KCGS++ A++VF     
Sbjct: 316 VSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKG 375

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           ++V ++T+ I G A +G   EAF  F  M   GI P+ ++++++L ACS    +++G   
Sbjct: 376 RNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQI 435

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
              + +  G   +      ++ +  + G L++A      +  K + V W  ++ A   H
Sbjct: 436 QDHIIEA-GYGSDDRVRTALLSMYAKCGSLKDAHRVFEKIS-KQNVVAWNAMITAYVQH 492



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 106/376 (28%), Positives = 173/376 (46%), Gaps = 41/376 (10%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +++K  +  D+FV  +LI  +  CG + DA  VFD     D+V+W SMI G  R+G   +
Sbjct: 236 LILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQ 295

Query: 61  GLKLFDKMPQR--------------------------------NDVSWNS-------ILG 81
              LF +M +                                  +V W++       IL 
Sbjct: 296 ACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILS 355

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + GS++DA  VF+ +  R++VSW  +I+GFAQ+GR  EA   F +M    +EPN   
Sbjct: 356 MYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVT 415

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
            +S+L AC+   AL  G  +  +I +     D  +  AL+ MYAKCGS+  A +VF    
Sbjct: 416 FMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKIS 475

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
            ++V A+ + I     +     A   F+ +  +GI P+S ++ ++L+ C     +E G  
Sbjct: 476 KQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELG-K 534

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           + H +    G++ +L     +V +    G L  A+N    MP K D V W T++     H
Sbjct: 535 WVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMP-KRDLVSWNTIIAGFVQH 593

Query: 322 RNAEMGQRIGNMLIES 337
              ++      M+ ES
Sbjct: 594 GKNQVAFDYFKMMQES 609



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/407 (23%), Positives = 196/407 (48%), Gaps = 44/407 (10%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVV----SWNSMINGYVRNGEILEGLKLF 65
           D    N+++   S  G+  +A  V +  D   +     ++++++   ++   + +G +++
Sbjct: 74  DTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIY 133

Query: 66  DKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
           + +     Q +    N+++    + G+   A ++F+ M ++ + SW +L+ G+ Q+G  +
Sbjct: 134 NHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYE 193

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
           EA  L  +M    ++P+    VS+L+ACA    +D G  +Y+ I K     D  +  ALI
Sbjct: 194 EAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALI 253

Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
           +M+ KCG I  A +VF +   +D+  +TS I GLA +G   +A  LF+ M+ +G+ PD +
Sbjct: 254 NMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKV 313

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA------ 295
           +++++L AC+H   +E+G      M +V G   E+     ++ +  + G +E+A      
Sbjct: 314 AFVSLLRACNHPEALEQGKKVHARMKEV-GWDTEIYVGTAILSMYTKCGSMEDALEVFDL 372

Query: 296 ---ENFIASMPM-------------------------KPDNVIWGTLLGACRVHRNAEMG 327
               N ++   M                         +P+ V + ++LGAC      + G
Sbjct: 373 VKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRG 432

Query: 328 QRIGNMLIESDQNHDGRY-ILLSNIYVETLKGENAEEVRKTMRKRKI 373
           Q+I + +IE+    D R    L ++Y +    ++A  V + + K+ +
Sbjct: 433 QQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNV 479



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 120/234 (51%), Gaps = 39/234 (16%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +++K     D+ V N+L+  +  CG +  A+ +F++    D+VSWN++I G+V++G+   
Sbjct: 539 LIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQV 598

Query: 61  GLKLFDKMPQR----NDVSWNSILG-------------------------------GLV- 84
               F  M +     + +++  +L                                GL+ 
Sbjct: 599 AFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLIS 658

Query: 85  ---RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + GS++DA +VF+++PK+++ SW  +I+G+AQ+GR KEAL LF +MQ   ++P+   
Sbjct: 659 MYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWIT 718

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ 195
            V  LSACA  G ++ G   +  +++  I+        ++D++ + G ++ A++
Sbjct: 719 FVGALSACAHAGLIEEGLHHFQSMKEFNIEPRMEHYGCMVDLFGRAGLLNEAVE 772



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 11/157 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++ + +F  DV V   LI  Y+ CG + DA  VF +    +V SW SMI GY ++G   E
Sbjct: 640 LITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKE 699

Query: 61  GLKLFDKMPQRN-DVSWNSILGGL---VRFGSVDDACRVFNQMPKRSLVS----WVVLIS 112
            L+LF +M Q      W + +G L      G +++    F  M + ++      +  ++ 
Sbjct: 700 ALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKEFNIEPRMEHYGCMVD 759

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
            F + G   EA+    +MQ   +EP+S +  +LL AC
Sbjct: 760 LFGRAGLLNEAVEFIIKMQ---VEPDSRVWGALLGAC 793


>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
 gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
          Length = 452

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 195/449 (43%), Positives = 297/449 (66%)

Query: 63  KLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKE 122
           KLF K+  RN V   +++ G  R G V+DA  +F+QM ++ LV W  +ISG+A++ +P+E
Sbjct: 4   KLFTKISSRNLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQE 63

Query: 123 ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182
           AL LF EMQ   ++P+   ++S++SACA+LG LD   W++ Y+ K  +     +  ALID
Sbjct: 64  ALNLFSEMQVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALID 123

Query: 183 MYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSIS 242
           MYAKCG++  A  VF     ++V ++TS I   A++G +  A + F  MK + I P+ ++
Sbjct: 124 MYAKCGNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNGVT 183

Query: 243 YIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM 302
           ++ VL ACSH G VE+G   F SM + H I P+ +HY CMVDL GRA LL +A   + +M
Sbjct: 184 FVGVLYACSHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELVETM 243

Query: 303 PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAE 362
           P+ P+ VIWG+L+ AC++H   E+G+     ++E + +HDG  + LSNIY +  + ++  
Sbjct: 244 PLAPNVVIWGSLMAACQIHGENELGEFAAKQVLELEPDHDGALVQLSNIYAKDRRWQDVG 303

Query: 363 EVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNV 422
           E+R  M++R I +  GCS IEL+  V+EF+  D+ H++  +IY+  +E+VK++K  GY  
Sbjct: 304 ELRNLMKQRGISKERGCSRIELNNQVYEFVMADKKHKQADKIYEKLDEVVKELKLVGYTP 363

Query: 423 ETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVS 482
            TRSV+ D+EEE K+ V+ +HSEKLAL +GL+    GS IRIVKN+R+C DCH+ +KLVS
Sbjct: 364 NTRSVLVDVEEEGKKEVVLWHSEKLALCYGLMGEGKGSCIRIVKNLRVCEDCHTFIKLVS 423

Query: 483 KVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           KV+  +I +RDR  +HH++ G CSC +YW
Sbjct: 424 KVYGMEIIVRDRTRFHHYKAGVCSCNDYW 452



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 92/193 (47%), Gaps = 39/193 (20%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           ++ V  ++I  YS  GRV DAR +FD+ ++ D+V W++MI+GY  + +  E L LF +M 
Sbjct: 13  NLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSEMQ 72

Query: 70  ----QRNDVSWNSILGGLVRFGSVDDA----------------------------C---- 93
               + + V+  S++    R G +D A                            C    
Sbjct: 73  VFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKCGNLG 132

Query: 94  ---RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
               VF +M  R+++SW  +I+ FA +G    AL  F +M+  +++PN    V +L AC+
Sbjct: 133 AARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNGVTFVGVLYACS 192

Query: 151 QLGALDYGNWVYS 163
             G ++ G   ++
Sbjct: 193 HAGLVEEGRRTFA 205



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 96/197 (48%), Gaps = 19/197 (9%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V KN     + V N+LI  Y+ CG +  AR VF++    +V+SW SMIN +  +G+    
Sbjct: 106 VDKNGLGGALPVNNALIDMYAKCGNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNA 165

Query: 62  LKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLIS 112
           LK F +M     + N V++  +L      G V++  R F  M     ++     +  ++ 
Sbjct: 166 LKFFYQMKDENIKPNGVTFVGVLYACSHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVD 225

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKL 172
            F +    ++AL L   ++++ L PN  I  SL++AC   G  + G     +  K+ ++L
Sbjct: 226 LFGRANLLRDALEL---VETMPLAPNVVIWGSLMAACQIHGENELG----EFAAKQVLEL 278

Query: 173 DSILCAALI---DMYAK 186
           +     AL+   ++YAK
Sbjct: 279 EPDHDGALVQLSNIYAK 295


>gi|225468727|ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 558

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/438 (44%), Positives = 296/438 (67%), Gaps = 5/438 (1%)

Query: 79  ILGGLVRF----GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL- 133
           +  GL+ F    G +D A +VF +MP+R LVSW  +I+ FA+NG   EALALF+ MQ + 
Sbjct: 121 VQNGLIHFYGCCGFLDFALKVFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVG 180

Query: 134 DLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLA 193
            ++P+  I++S++SA + LG L+ G W+  +I +  ++    L  AL+DM+++CG I+ +
Sbjct: 181 TVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEES 240

Query: 194 MQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL 253
           M+VF   G+++V  +T+ I GLA++G S EA  +F  M++ G  PD +++  VL ACSH 
Sbjct: 241 MRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHG 300

Query: 254 GWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGT 313
           G V +G++ F S+ + +G++P  +HY CMVDLLGRAGLL EA  F+  MP++P+++IW T
Sbjct: 301 GLVSEGWHVFESIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIRPNSIIWRT 360

Query: 314 LLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKI 373
           LLGAC  H   E+ +++   + E D  HDG Y+LLSN+Y    +      VR +MR+++I
Sbjct: 361 LLGACVNHNYIELAEKVKEKINELDSYHDGDYVLLSNVYGGVGRWAEKAGVRNSMREKRI 420

Query: 374 KRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEE 433
            + PGCSLI ++ ++HEF+AGD +H + + I +F   ++  +K  GY  +  +V+FDIEE
Sbjct: 421 SKKPGCSLINVNHLIHEFVAGDNNHPQFESIREFLVSMIDSLKVVGYTPDISNVLFDIEE 480

Query: 434 EEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRD 493
           EEKE+ +GYHSEKLA+AF L+C K    IR++KN+RIC DCH  MK  S VF+R+I IRD
Sbjct: 481 EEKESTLGYHSEKLAVAFALLCFKDSRTIRVMKNLRICHDCHCFMKYASDVFEREIIIRD 540

Query: 494 RKHYHHFEDGSCSCLEYW 511
           R  +HHF  GSCSC +YW
Sbjct: 541 RNRFHHFSKGSCSCRDYW 558



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 139/305 (45%), Gaps = 50/305 (16%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++ K  F  DV+V+N LI FY  CG +  A  VF+E  + D+VSW+SMI  + +NG   E
Sbjct: 109 LLFKLGFDSDVYVQNGLIHFYGCCGFLDFALKVFEEMPERDLVSWSSMIACFAKNGFGYE 168

Query: 61  GLKLFDKMP-----------------------------------QRNDVSWNSILGGLV- 84
            L LF +M                                     RN + +   LG  + 
Sbjct: 169 ALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALV 228

Query: 85  ----RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
               R G ++++ RVF++M +R++++W  LI+G A +GR  EAL +F EM++   +P+  
Sbjct: 229 DMFSRCGCIEESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHV 288

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSIL--CAALIDMYAKCGSIDLAMQVFH 198
               +L AC+  G +  G  V+  I+ +   ++ +      ++D+  + G ++ A +   
Sbjct: 289 TFTGVLVACSHGGLVSEGWHVFESIRNE-YGMEPLPEHYGCMVDLLGRAGLLNEACKFVD 347

Query: 199 SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI---SYIAVLSACSHLG- 254
               +  S     + G  +N + I   EL E +K K    DS     Y+ + +    +G 
Sbjct: 348 GMPIRPNSIIWRTLLGACVNHNYI---ELAEKVKEKINELDSYHDGDYVLLSNVYGGVGR 404

Query: 255 WVEKG 259
           W EK 
Sbjct: 405 WAEKA 409



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 97/199 (48%), Gaps = 7/199 (3%)

Query: 129 EMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCG 188
           +M    + P+      +L ACA+L     G  ++S + K     D  +   LI  Y  CG
Sbjct: 77  KMAMAGVSPDHFTFPFVLKACARLQT---GLDLHSLLFKLGFDSDVYVQNGLIHFYGCCG 133

Query: 189 SIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG-ISPDSISYIAVL 247
            +D A++VF    ++D+ +++S I   A NG   EA  LF+ M+  G + PD +  ++V+
Sbjct: 134 FLDFALKVFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVV 193

Query: 248 SACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPD 307
           SA S LG +E G  +       +G++  +     +VD+  R G +EE+      M  + +
Sbjct: 194 SAISILGDLELG-KWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGER-N 251

Query: 308 NVIWGTLLGACRVH-RNAE 325
            + W  L+    VH R+AE
Sbjct: 252 VLTWTALINGLAVHGRSAE 270


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/534 (39%), Positives = 323/534 (60%), Gaps = 32/534 (5%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DV  + ++I  Y   GR+ +AR +FDE    +V+SW +MI+GYV+NG++    KLF+ MP
Sbjct: 170 DVVARTNMISGYCQEGRLAEARELFDEMPRRNVISWTTMISGYVQNGQVDVARKLFEVMP 229

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNG----------- 118
           ++N+VSW ++L G  + G +++A  +F+ MP +++V+   +I GF QNG           
Sbjct: 230 EKNEVSWTAMLMGYTQGGRIEEASELFDAMPVKAVVACNAMILGFGQNGEVAKARQVFDQ 289

Query: 119 -RPK-------------------EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
            R K                   EAL LF  MQ   ++ N   L+S+LS CA L +LD+G
Sbjct: 290 IREKDDGTWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHG 349

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
             V++ + K     D  + + LI MY KCG +  A Q+F  +  KD+  + S I G A +
Sbjct: 350 RQVHAELVKSQFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQH 409

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDH 278
           G   EA ++F  M S G++ D ++++ VLSACS+ G V++G   F SM   + ++P+ +H
Sbjct: 410 GLVEEALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESMKSKYLVEPKTEH 469

Query: 279 YACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338
           YACMVDLLGRAGL+ +A + I  MP++ D +IWG LLGACR H N  + +     L++ +
Sbjct: 470 YACMVDLLGRAGLVNDAMDLIQKMPVEADAIIWGALLGACRTHMNMNLAEVAAKKLLQLE 529

Query: 339 QNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAG-DRS 397
             + G YILLSNIY    +  +  E+R+ MR +K+ ++PGCS IE++  VH F  G    
Sbjct: 530 PKNAGPYILLSNIYASKGRWGDVAELRRNMRVKKVSKSPGCSWIEVEKRVHMFTGGVSTK 589

Query: 398 HEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTK 457
           H +   I +  E++   ++  GY  ++  V+ D++EEEK   +G+HSE+LA+AFGL+   
Sbjct: 590 HPELSSIMKMLEKLDGMLREAGYYPDSSFVLHDVDEEEKVRSLGHHSERLAVAFGLLKVP 649

Query: 458 PGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            G  IR++KN+R+C DCHSA+KL++K+  R+I +RD   +HHF+DG CSC +YW
Sbjct: 650 EGMPIRVMKNLRVCGDCHSAIKLIAKITGREIILRDANRFHHFKDGFCSCRDYW 703



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/252 (33%), Positives = 130/252 (51%), Gaps = 12/252 (4%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDV 74
           NS I  Y+  G++  AR VFDE  D  +VSWNSM+ GY +N    E   LFDKMP+RN V
Sbjct: 20  NSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPERNTV 79

Query: 75  SWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD 134
           SWN ++ G V+   V +A + F+ MP+R++VSW  ++ G+ Q G   EA  LF +M    
Sbjct: 80  SWNGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMP--- 136

Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
            E N      +L    Q+  +D    ++  +  K    D +    +I  Y + G +  A 
Sbjct: 137 -EKNVVSWTVMLGGLIQVRRIDEARGLFDIMPVK----DVVARTNMISGYCQEGRLAEAR 191

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
           ++F     ++V ++T+ I G   NG    A +LFE M  K    + +S+ A+L   +  G
Sbjct: 192 ELFDEMPRRNVISWTTMISGYVQNGQVDVARKLFEVMPEK----NEVSWTAMLMGYTQGG 247

Query: 255 WVEKGFYYFHSM 266
            +E+    F +M
Sbjct: 248 RIEEASELFDAM 259



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 125/265 (47%), Gaps = 21/265 (7%)

Query: 43  VSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKR 102
           +++NS I  Y R G+I    ++FD+MP +  VSWNS++ G  +     +A  +F++MP+R
Sbjct: 17  IAYNSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPER 76

Query: 103 SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVY 162
           + VSW  LISG+ +N    EA   F  M     E N     +++    Q G +     ++
Sbjct: 77  NTVSWNGLISGYVKNRMVSEARKAFDTMP----ERNVVSWTAMVRGYVQEGLVSEAETLF 132

Query: 163 SYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSI 222
             + +K +   +++   LI +      ID A  +F     KDV A T+ I G    G   
Sbjct: 133 WQMPEKNVVSWTVMLGGLIQVR----RIDEARGLFDIMPVKDVVARTNMISGYCQEGRLA 188

Query: 223 EAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACM 282
           EA ELF+ M  + +    IS+  ++S     G V+     F  M       PE +  +  
Sbjct: 189 EARELFDEMPRRNV----ISWTTMISGYVQNGQVDVARKLFEVM-------PEKNEVSWT 237

Query: 283 VDLLG--RAGLLEEAENFIASMPMK 305
             L+G  + G +EEA     +MP+K
Sbjct: 238 AMLMGYTQGGRIEEASELFDAMPVK 262



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 125/298 (41%), Gaps = 47/298 (15%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +VK+ F  DVFV + LI  Y  CG +  AR +FD     D+V WNS+I GY ++G + E 
Sbjct: 356 LVKSQFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEEA 415

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
           L++F +M             G+   G                 V++V ++S  +  G+ K
Sbjct: 416 LQVFHEMCS----------SGMATDG-----------------VTFVGVLSACSYTGKVK 448

Query: 122 EALALFREMQSLDL-EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
           E L +F  M+S  L EP +     ++    + G +   N     IQK  ++ D+I+  AL
Sbjct: 449 EGLEIFESMKSKYLVEPKTEHYACMVDLLGRAGLV---NDAMDLIQKMPVEADAIIWGAL 505

Query: 181 ID---MYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGIS 237
           +     +      ++A +       K+   Y       A  G   +  EL  NM+ K +S
Sbjct: 506 LGACRTHMNMNLAEVAAKKLLQLEPKNAGPYILLSNIYASKGRWGDVAELRRNMRVKKVS 565

Query: 238 PDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA 295
                       CS +  VEK  + F     V    PEL     M++ L   G+L EA
Sbjct: 566 KS--------PGCSWIE-VEKRVHMFTG--GVSTKHPELSSIMKMLEKLD--GMLREA 610


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/510 (41%), Positives = 309/510 (60%), Gaps = 37/510 (7%)

Query: 39   DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRV--- 95
            DL+V   N +I+ Y + G ++E  ++ D+MP R+ VSWNS++ G  R G  DDA  V   
Sbjct: 1158 DLNVFVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKE 1217

Query: 96   ----------------------------------FNQMPKRSLVSWVVLISGFAQNGRPK 121
                                              F ++  +SLVSW V+I+ +  N  P 
Sbjct: 1218 MELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPA 1277

Query: 122  EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
            EA+ +F +M+   ++P++  + S+L AC  L AL  G  ++ Y+ +K ++ + +L  ALI
Sbjct: 1278 EAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALI 1337

Query: 182  DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
            DMYAKCG ++ A +VF     +DV ++TS I    MNG   +A  LF  M+  G++PDSI
Sbjct: 1338 DMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSI 1397

Query: 242  SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
            ++++VLSACSH G +++G YYF  M +   I P ++H+ CMVDLLGRAG ++EA  FI  
Sbjct: 1398 AFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQ 1457

Query: 302  MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361
            MPM+P+  +WG LL ACRV+ N  +G    + L +      G Y+LLSNIY +  + E+ 
Sbjct: 1458 MPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDV 1517

Query: 362  EEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYN 421
              VR  M+ + IK+ PG S  ELD  VH FLAGD+SH ++++IY+  + +V K+K  GY 
Sbjct: 1518 TTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDVLVGKMKEAGYV 1577

Query: 422  VETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLV 481
             ET S + D+EEE+KE  +  HSEKLA+AF ++ T PGS IRI KN+R+C DCH A KL+
Sbjct: 1578 PETDSALHDVEEEDKECHLAVHSEKLAIAFAILNTAPGSPIRITKNLRVCGDCHIAAKLI 1637

Query: 482  SKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            SK+  R+I+IRD   +HHF +G CSC +YW
Sbjct: 1638 SKIVGREITIRDTNRFHHFYNGVCSCGDYW 1667



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 141/340 (41%), Gaps = 74/340 (21%)

Query: 17   LIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM------PQ 70
            L++ Y+VCG     R +FDE    +VV +N MI  YV N    + L +F  M      P 
Sbjct: 1066 LMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPD 1125

Query: 71   ----------------------------RNDVSWNSILG-GLV----RFGSVDDACRVFN 97
                                        R  +  N  +G GL+    + G + +ACRV +
Sbjct: 1126 HYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLD 1185

Query: 98   QMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDY 157
            ZMP R +VSW  L++G A+NG+  +AL + +EM+ L L+P++  + SLL A         
Sbjct: 1186 ZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPA--------- 1236

Query: 158  GNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAM 217
                   +   C+                  ++    ++F    +K + ++   I     
Sbjct: 1237 -------VTNTCLD-----------------NVSFVKEMFMKLANKSLVSWNVMIAVYMN 1272

Query: 218  NGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELD 277
            N    EA ++F  M+   + PD+IS  +VL AC  L  +  G    H       ++P L 
Sbjct: 1273 NSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLG-RRIHEYVVRKRLQPNLL 1331

Query: 278  HYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
                ++D+  + G LE A      M  + D V W +++ A
Sbjct: 1332 LENALIDMYAKCGCLEYAREVFDQMKFR-DVVSWTSMISA 1370



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 129/286 (45%), Gaps = 13/286 (4%)

Query: 95   VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA 154
            +F+++PK+++V + V+I  +  N    +AL +F+ M    ++P+      +L A +    
Sbjct: 1082 IFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSED 1141

Query: 155  LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFG 214
            L  G  +++ + +  + L+  +   LI MY KCG +  A +V      +DV ++ S + G
Sbjct: 1142 LWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAG 1201

Query: 215  LAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP 274
             A NG   +A E+ + M+  G+ PD+ +  ++L A ++         +   MF +     
Sbjct: 1202 CARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCL--DNVSFVKEMF-MKLANK 1258

Query: 275  ELDHYACMVDLLGRAGLLEEAENFIASM---PMKPDNVIWGTLLGACRVHRNAEMGQRIG 331
             L  +  M+ +     +  EA +    M    + PD +   ++L AC       +G+RI 
Sbjct: 1259 SLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIH 1318

Query: 332  NMLIESDQNHDGRYILLSNIYVETLKG----ENAEEVRKTMRKRKI 373
              ++      +   +LL N  ++        E A EV   M+ R +
Sbjct: 1319 EYVVRKRLQPN---LLLENALIDMYAKCGCLEYAREVFDQMKFRDV 1361


>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Vitis vinifera]
          Length = 590

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/469 (43%), Positives = 304/469 (64%), Gaps = 10/469 (2%)

Query: 52  YVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACR-VFNQMPKRSLVSWVVL 110
           ++R+G  L    L    P  +     ++L    + G V  ACR +FNQ+ K  L SW  +
Sbjct: 123 WLRHGRALHTHVLKFLEPTCDPFVQAALLNYYAKCGKVG-ACRYLFNQISKPDLASWNSI 181

Query: 111 ISGFAQNG--------RPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVY 162
           +S +  N            E L LF EMQ   ++ N   LV+L+SACA+LGAL  G W +
Sbjct: 182 LSAYVHNSGAICEDVSLSLEVLTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWAH 241

Query: 163 SYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSI 222
            Y+ K  +KL+  +  ALIDMY+KCG +DLA Q+F     +D   Y + I G A++G+  
Sbjct: 242 VYVLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGH 301

Query: 223 EAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACM 282
           +A +LF+ M  +G++PD ++ +  + +CSH+G VE+G   F SM +V+G++P+L+HY C+
Sbjct: 302 QALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCL 361

Query: 283 VDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD 342
           VDLLGRAG L EAE  + +MPMKP+ VIW +LLGA RVH N E+G+ +   LI+ +    
Sbjct: 362 VDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPETS 421

Query: 343 GRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQ 402
           G Y+LLSN+Y    + ++ + VRK M+   I + PG SL+E+ G +HEFL GD++H +++
Sbjct: 422 GNYVLLSNMYASINRWDDVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFLMGDKTHPRSK 481

Query: 403 EIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVI 462
           EIY   EE+ +++  YG+   T  V+FDIEEEEKE  + YHSE+LA+AF LI +   + I
Sbjct: 482 EIYLKLEEMSRRLHEYGHKPRTLEVLFDIEEEEKEDALSYHSERLAIAFALIASHHCAPI 541

Query: 463 RIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           RI+KN+R+C DCH++ KL+SK+++R+I +RDR  +HHF++G+CSC +YW
Sbjct: 542 RIIKNLRVCGDCHTSSKLISKIYEREIIVRDRNRFHHFKEGACSCSDYW 590



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 110/231 (47%), Gaps = 52/231 (22%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRN-GEI-------LEG 61
           D FV+ +L+ +Y+ CG+V   R++F++    D+ SWNS+++ YV N G I       LE 
Sbjct: 143 DPFVQAALLNYYAKCGKVGACRYLFNQISKPDLASWNSILSAYVHNSGAICEDVSLSLEV 202

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGS----------------------------- 88
           L LF +M +     N+V+  +++      G+                             
Sbjct: 203 LTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWAHVYVLKHNLKLNHFVGTALIDM 262

Query: 89  ------VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
                 +D AC++F+Q+P R  + +  +I GFA +G   +AL LF++M    L P+   L
Sbjct: 263 YSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQALDLFKKMTLEGLAPDDVTL 322

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKC---IKLDSILCAALIDMYAKCGSI 190
           V  + +C+ +G ++ G  V+  +++      KL+   C  L+D+  + G +
Sbjct: 323 VVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGC--LVDLLGRAGRL 371



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 115/247 (46%), Gaps = 25/247 (10%)

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALF---REMQSLDLEPNSAILVSLLSA 148
           A  +FN +P  ++  +  LIS  A N +P   +A     R +    L+PN     SL  A
Sbjct: 59  ALSIFNHIPNPTIFLYNTLISSLA-NIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKA 117

Query: 149 CAQLGALDYGNWVYSYIQK----KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           C     L +G  +++++ K     C   D  + AAL++ YAKCG +     +F+     D
Sbjct: 118 CGSQPWLRHGRALHTHVLKFLEPTC---DPFVQAALLNYYAKCGKVGACRYLFNQISKPD 174

Query: 205 VSAYTSAIFGLAMNGH--------SIEAFELFENMKSKGISPDSISYIAVLSACSHLGWV 256
           ++++ S +     N          S+E   LF  M+   I  + ++ +A++SAC+ LG +
Sbjct: 175 LASWNSILSAYVHNSGAICEDVSLSLEVLTLFIEMQKSLIKANEVTLVALISACAELGAL 234

Query: 257 EKGFYYFHSMFDVHGIKPELDHY--ACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTL 314
            +G  + H     H +K  L+H+    ++D+  + G L+ A      +P + D + +  +
Sbjct: 235 SQG-AWAHVYVLKHNLK--LNHFVGTALIDMYSKCGCLDLACQLFDQLPHR-DTLCYNAM 290

Query: 315 LGACRVH 321
           +G   +H
Sbjct: 291 IGGFAIH 297



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 83/175 (47%), Gaps = 16/175 (9%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K++   + FV  +LI  YS CG +  A  +FD+    D + +N+MI G+  +G   + 
Sbjct: 244 VLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQA 303

Query: 62  LKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQM-------PKRSLVSWVVL 110
           L LF KM       +DV+    +      G V++ C VF  M       PK  L  +  L
Sbjct: 304 LDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPK--LEHYGCL 361

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           +    + GR +EA      + ++ ++PN+ I  SLL A    G L+ G  V  ++
Sbjct: 362 VDLLGRAGRLREA---EERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHL 413


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 208/553 (37%), Positives = 331/553 (59%), Gaps = 48/553 (8%)

Query: 7   FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFD 66
           F  D+FV ++L+  YS CG +RDAR +FDE    ++VSW SMI GYV+N +    L LF 
Sbjct: 183 FEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALLLFK 242

Query: 67  K------------------------MPQRNDVSWNSILGGLVRF---------------- 86
           +                        +   + VS  SI  G+  F                
Sbjct: 243 EFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTL 302

Query: 87  -------GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM-QSLDLEPN 138
                  G +  + RVF+ M +R ++SW  +I+ +AQNG   E++ +F  M +  ++  N
Sbjct: 303 MDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYN 362

Query: 139 SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH 198
           +  L ++L ACA  G+   G  ++  + K  ++ +  +  ++IDMY KCG +++A + F 
Sbjct: 363 AVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFD 422

Query: 199 SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEK 258
              +K+V ++++ + G  M+GH+ EA E+F  M   G+ P+ I++++VL+ACSH G +E+
Sbjct: 423 RMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEE 482

Query: 259 GFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
           G+++F +M     ++P ++HY CMVDLLGRAG L+EA + I  M ++PD V+WG LLGAC
Sbjct: 483 GWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGAC 542

Query: 319 RVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPG 378
           R+H+N ++G+     L E D  + G Y+LLSNIY +  + E+ E +R  M+   + + PG
Sbjct: 543 RMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPG 602

Query: 379 CSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKET 438
            SL+++ G VH FL GDR H + ++IY++ E++  K++  GY  +  SV+ D+  EEKE 
Sbjct: 603 FSLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDMTSVLHDVGHEEKEM 662

Query: 439 VIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYH 498
           V+  HSEKLA+AFG++ T PG+ I I+KN+R+C DCH+A+K +SK+  R+I +RD K +H
Sbjct: 663 VLRVHSEKLAVAFGIMNTVPGTTIHIIKNLRVCGDCHTAIKFISKIVDREIVVRDSKRFH 722

Query: 499 HFEDGSCSCLEYW 511
           HF DG CSC +YW
Sbjct: 723 HFRDGLCSCGDYW 735



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 116/252 (46%), Gaps = 16/252 (6%)

Query: 78  SILGGLV---RFGSVDDACRVFNQ-MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL 133
           SI  G V   R+ +  +   +FN+ + K ++ SW  +I+  A++G   EAL  F  M+ L
Sbjct: 87  SICAGAVLRRRYSNNPNLTTLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKL 146

Query: 134 DLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLA 193
            L+PN +     + +C+ L  L  G   +        + D  + +AL+DMY+KCG +  A
Sbjct: 147 SLKPNRSTFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDA 206

Query: 194 MQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELF-----ENMKSKG---ISPDSISYIA 245
             +F     +++ ++TS I G   N  +  A  LF     E   S+G   +  D I+ ++
Sbjct: 207 RTLFDEISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVS 266

Query: 246 VLSACSHLGWVEKGFYY-FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPM 304
           VLSACS +   EK      H      G + +L     ++D   + G L  +      M  
Sbjct: 267 VLSACSRVS--EKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAE 324

Query: 305 KPDNVIWGTLLG 316
           + D + W +++ 
Sbjct: 325 R-DVISWNSIIA 335


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/510 (41%), Positives = 308/510 (60%), Gaps = 37/510 (7%)

Query: 39  DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRV--- 95
           DL+V   N +I+ Y + G ++E  ++ D+MP R+ VSWNS++ G  R G  DDA  V   
Sbjct: 169 DLNVFVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKE 228

Query: 96  ----------------------------------FNQMPKRSLVSWVVLISGFAQNGRPK 121
                                             F ++  +SLVSW V+I+ +  N  P 
Sbjct: 229 MELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPA 288

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
           EA+ +F +M+   ++P++  + S+L AC  L AL  G  ++ Y+ +K ++ + +L  ALI
Sbjct: 289 EAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALI 348

Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
           DMYAKCG ++ A +VF     +DV ++TS I    MNG   +A  LF  M+  G++PDSI
Sbjct: 349 DMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSI 408

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
           ++++VLSACSH G +++G YYF  M +   I P ++H+ CMVDLLGRAG ++EA  FI  
Sbjct: 409 AFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQ 468

Query: 302 MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361
           MPM+P+  +WG LL ACRV+ N  +G    + L +      G Y+LLSNIY +  + E+ 
Sbjct: 469 MPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDV 528

Query: 362 EEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYN 421
             VR  M+ + IK+ PG S  ELD  VH FLAGD+SH ++++IY+  +  V K+K  GY 
Sbjct: 529 TTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDVSVGKMKEAGYV 588

Query: 422 VETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLV 481
            ET S + D+EEE+KE  +  HSEKLA+AF ++ T PGS IRI KN+R+C DCH A KL+
Sbjct: 589 PETDSALHDVEEEDKECHLAVHSEKLAIAFAILNTAPGSPIRITKNLRVCGDCHIAAKLI 648

Query: 482 SKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           SK+  R+I+IRD   +HHF +G CSC +YW
Sbjct: 649 SKIVGREITIRDTNRFHHFYNGVCSCGDYW 678



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 140/340 (41%), Gaps = 74/340 (21%)

Query: 17  LIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ------ 70
           L++ Y+VCG     R +FDE    +VV +N MI  YV N    + L +F  M        
Sbjct: 77  LMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPD 136

Query: 71  ----------------------------RNDVSWNSILG-GLV----RFGSVDDACRVFN 97
                                       R  +  N  +G GL+    + G + +ACRV +
Sbjct: 137 HYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLD 196

Query: 98  QMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDY 157
           QMP R +VSW  L++G A+NG+  +AL + +EM+ L L+P++  + SLL A         
Sbjct: 197 QMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPA--------- 247

Query: 158 GNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAM 217
                  +   C+                  ++    ++F    +K + ++   I     
Sbjct: 248 -------VTNTCLD-----------------NVSFVKEMFMKLANKSLVSWNVMIAVYMN 283

Query: 218 NGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELD 277
           N    EA ++F  M+   + PD+IS  +VL AC  L  +  G    H       ++P L 
Sbjct: 284 NSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLG-RRIHEYVVRKRLQPNLL 342

Query: 278 HYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
               ++D+  + G LE A      M  + D V W +++ A
Sbjct: 343 LENALIDMYAKCGCLEYAREVFDQMKFR-DVVSWTSMISA 381



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 129/286 (45%), Gaps = 13/286 (4%)

Query: 95  VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA 154
           +F+++PK+++V + V+I  +  N    +AL +F+ M    ++P+      +L A +    
Sbjct: 93  IFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSED 152

Query: 155 LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFG 214
           L  G  +++ + +  + L+  +   LI MY KCG +  A +V      +DV ++ S + G
Sbjct: 153 LWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAG 212

Query: 215 LAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP 274
            A NG   +A E+ + M+  G+ PD+ +  ++L A ++       F     MF +     
Sbjct: 213 CARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSF--VKEMF-MKLANK 269

Query: 275 ELDHYACMVDLLGRAGLLEEAENFIASM---PMKPDNVIWGTLLGACRVHRNAEMGQRIG 331
            L  +  M+ +     +  EA +    M    + PD +   ++L AC       +G+RI 
Sbjct: 270 SLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIH 329

Query: 332 NMLIESDQNHDGRYILLSNIYVETLKG----ENAEEVRKTMRKRKI 373
             ++      +   +LL N  ++        E A EV   M+ R +
Sbjct: 330 EYVVRKRLQPN---LLLENALIDMYAKCGCLEYAREVFDQMKFRDV 372


>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
          Length = 599

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 203/480 (42%), Positives = 301/480 (62%), Gaps = 4/480 (0%)

Query: 36  ESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ----RNDVSWNSILGGLVRFGSVDD 91
           E    +   WNS +         ++ + LF ++ Q     +  + +S+L   +    + +
Sbjct: 120 EKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSN 179

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
              +   + K    SW  +I+G+ Q G+ KEA+ LF +M+   ++ N   +V++L+ACA 
Sbjct: 180 GRILHGVVEKVGFRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACAD 239

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSA 211
           LGALD G  ++ Y  +   K +  +   LIDMY KCG ++ A +VF    ++ V ++++ 
Sbjct: 240 LGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAM 299

Query: 212 IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG 271
           I GLAM+G + EA  LF +M   GI P+ +++I +L ACSH+G + +G  +F SM   +G
Sbjct: 300 IGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYG 359

Query: 272 IKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIG 331
           I P+++HY CMVDLL RAGLL EA  FI +MPMKP+ V+WG LLGACRVH+N EM +   
Sbjct: 360 IIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAI 419

Query: 332 NMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEF 391
             L+E D  +DG Y++LSNIY E  + E+   VRK M+ R++K+ PG S I +DGVVHEF
Sbjct: 420 KHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEF 479

Query: 392 LAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAF 451
           +AG+ SH  T++I+Q WEE++++++  GY   T  V+ DIEE EK   +  HSEKLAL F
Sbjct: 480 VAGEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLALVF 539

Query: 452 GLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           GL+ T   + IRI+KN+RIC DCHSA KL+S +  R+I +RDR  +H F D SCSC +YW
Sbjct: 540 GLMNTPAETPIRIMKNLRICEDCHSAFKLISAIVNREIVVRDRNRFHCFNDNSCSCRDYW 599



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 12/155 (7%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           ++ F  +V + N+LI  Y  CG + +A  VF+E ++  VVSW++MI G   +G   E L+
Sbjct: 255 RHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALR 314

Query: 64  LFDKMPQ----RNDVSWNSILGGLVRFGSVDDACRVFNQMPK-----RSLVSWVVLISGF 114
           LF  M Q     N V++  +L      G + +  R F  M +       +  +  ++   
Sbjct: 315 LFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLL 374

Query: 115 AQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
           ++ G   EA      M    ++PN  +  +LL AC
Sbjct: 375 SRAGLLHEAHEFILNM---PMKPNGVVWGALLGAC 406


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/552 (38%), Positives = 326/552 (59%), Gaps = 46/552 (8%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
            V + +A D  V+N+LI  YS CG +  AR VFD   + DV++WN+MI+GY + G   + 
Sbjct: 189 TVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQA 248

Query: 62  LKLFDKM----PQRNDVSWNSILGGLVRF------------------------------- 86
           L+LF +M    P+ N V++  +L                                     
Sbjct: 249 LELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNM 308

Query: 87  -----GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
                 S+++A +VF +M  R +++W +LI  + Q G+ K+AL +F++MQ  ++ PN   
Sbjct: 309 YTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEIT 368

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           L ++LSACA LGA   G  V++ I     K D +L  +L++MY +CGS+D  + VF +  
Sbjct: 369 LSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIR 428

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
           DK + ++++ I   A +GHS    E F  +  +G++ D ++ ++ LSACSH G +++G  
Sbjct: 429 DKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQ 488

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            F SM   HG+ P+  H+ CMVDLL RAG LE AEN I  MP  PD V W +LL  C++H
Sbjct: 489 TFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLH 548

Query: 322 RNAEMGQRIGNML--IESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGC 379
            + +   R+ + L  +ES+  H     LLSN+Y E  +    ++VRKT  +R  ++ PGC
Sbjct: 549 NDTKRAARVADKLFELESEDEH-STVTLLSNVYAEAGRW---DDVRKTRNRRAARKNPGC 604

Query: 380 SLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETV 439
           S IE++  VHEF+AGD+SH + + I    + + K++K+ GY  + R V+ +++EEEKE +
Sbjct: 605 SYIEINDTVHEFVAGDKSHPEEELIAAEIKRLSKQMKDAGYVPDMRMVLHNVKEEEKEQM 664

Query: 440 IGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHH 499
           + YHSEKLA+A+GLI T PG+ + IVKN+R C DCH+A K +S++  RKI +RD   +HH
Sbjct: 665 LCYHSEKLAIAYGLISTPPGTPLHIVKNLRACVDCHAAAKFISRIVGRKIVVRDSTRFHH 724

Query: 500 FEDGSCSCLEYW 511
           FE+GSCSC +YW
Sbjct: 725 FENGSCSCKDYW 736



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 94/362 (25%), Positives = 174/362 (48%), Gaps = 45/362 (12%)

Query: 9   YDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM 68
           +D+ +  +LI  Y+ C  +  AR  FDE     +V+WN++I GY RNG+    LK++  M
Sbjct: 92  FDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDM 151

Query: 69  PQRN----------------------DVS--------------------WNSILGGLVRF 86
             ++                      D+S                     N+++    + 
Sbjct: 152 VSKSPEGMKPDAITFSSALYACTVVGDISQGREIEARTVASGYASDSIVQNALINMYSKC 211

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           GS++ A +VF+++  R +++W  +ISG+A+ G   +AL LF+ M   D +PN    + LL
Sbjct: 212 GSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLL 271

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC-GSIDLAMQVFHSYGDKDV 205
           +AC  L  L+ G  ++  +++   + D ++   L++MY KC  S++ A QVF     +DV
Sbjct: 272 TACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTRDV 331

Query: 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHS 265
             +   I      G + +A ++F+ M+ + ++P+ I+   VLSAC+ LG   +G    H+
Sbjct: 332 ITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQG-KAVHA 390

Query: 266 MFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAE 325
           +      K ++     ++++  R G L++     A++  K   V W TL+ A   H ++ 
Sbjct: 391 LIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDK-SLVSWSTLIAAYAQHGHSR 449

Query: 326 MG 327
            G
Sbjct: 450 TG 451



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 159/342 (46%), Gaps = 46/342 (13%)

Query: 20  FYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM----------- 68
            Y  CG V DA  VF   +  + VSW  ++  + RNG   E L  + +M           
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 69  --------PQRNDVSWNSILGGLV---------------------RFGSVDDACRVFNQM 99
                       D+    +L  ++                     R   ++ A + F++M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 100 PKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE---PNSAILVSLLSACAQLGALD 156
            K++LV+W  LI+G+++NG  + AL ++++M S   E   P++    S L AC  +G + 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDIS 180

Query: 157 YGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLA 216
            G  + +         DSI+  ALI+MY+KCGS++ A +VF    ++DV A+ + I G A
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYA 240

Query: 217 MNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPEL 276
             G + +A ELF+ M      P+ +++I +L+AC++L  +E+G    H      G + +L
Sbjct: 241 KQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQG-RAIHRKVREDGYESDL 299

Query: 277 DHYACMVDLLGR-AGLLEEAENFIASMPMKPDNVIWGTLLGA 317
                ++++  + +  LEEA      M  + D + W  L+ A
Sbjct: 300 VIGNVLLNMYTKCSSSLEEARQVFERMRTR-DVITWNILIVA 340



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 129/253 (50%), Gaps = 10/253 (3%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           GSV DA  VF+ +   + VSW ++++ FA+NG  +EAL  +R M    L P+ A+ V  +
Sbjct: 6   GSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVVAI 65

Query: 147 SACAQLGALDYGNWVYSYI-QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
             C+    L  G  +++ I + + ++ D IL  ALI MYA+C  ++LA + F   G K +
Sbjct: 66  GVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTL 125

Query: 206 SAYTSAIFGLAMNGHSIEAFELFENMKSK---GISPDSISYIAVLSACSHLGWVEKGFYY 262
             + + I G + NG    A +++++M SK   G+ PD+I++ + L AC+ +G + +G   
Sbjct: 126 VTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQG-RE 184

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
             +     G   +      ++++  + G LE A      +  + D + W T++       
Sbjct: 185 IEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNR-DVIAWNTMISGYAKQG 243

Query: 323 NA----EMGQRIG 331
            A    E+ QR+G
Sbjct: 244 AATQALELFQRMG 256


>gi|414883627|tpg|DAA59641.1| TPA: hypothetical protein ZEAMMB73_113196 [Zea mays]
          Length = 637

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/511 (42%), Positives = 309/511 (60%), Gaps = 30/511 (5%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + VK   A D++V+N+ I FY VCG V   R VF   D+L +V                 
Sbjct: 157 LAVKAGAAGDLYVRNAQIHFYGVCGDVAAMRKVF---DELPIV----------------- 196

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
                     R+ V+WN++L G VR G V  A  VF+ MP R  VSW  +I G+ + G P
Sbjct: 197 ----------RDVVTWNAVLAGYVRAGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEP 246

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
           + AL +F+ M +  ++ N A +V+ LSA AQLG L+ G +V+  +++  + +   L AAL
Sbjct: 247 EVALGVFKNMVAQGVKANEAAIVTALSAAAQLGLLEQGKFVHEVVKRVGMTMSVNLGAAL 306

Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           IDMY+KCGS+  A +VF +   +DV A+ S I GLA +G   +A +LFE   S+G  P S
Sbjct: 307 IDMYSKCGSVAAAKEVFDAMPRRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTS 366

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
           I+++ VL+ACS  G V++G  YF  M + + I+ E++HY CMVDLL RAGL++EA   I 
Sbjct: 367 ITFVGVLNACSRTGLVDEGRRYFKLMAEKYDIESEMEHYGCMVDLLSRAGLVQEAVELIE 426

Query: 301 SMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGEN 360
            M + PD V+WGT+L AC+ H   ++G  +GN LIE D  HDG Y+LL++IY +  K + 
Sbjct: 427 GMRIPPDPVLWGTILSACKRHGLVDLGITVGNKLIELDPAHDGYYVLLASIYAKAKKWDE 486

Query: 361 AEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGY 420
             +VRK M  R   ++ G SL+E  G+VH+FL GD +H+ +  IY     I +++   GY
Sbjct: 487 VRKVRKLMSNRGTSKSAGWSLMEAHGIVHKFLVGDMNHKDSARIYNMLCTINRRLAEAGY 546

Query: 421 NVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKL 480
             +  SV+ DI +EEK   I  HSE+LA+A+G I  + GS IRIVKN+ +C DCH   K+
Sbjct: 547 VPDVSSVLHDIGDEEKVHAIKVHSERLAIAYGFIVVEAGSPIRIVKNLSVCGDCHEFSKM 606

Query: 481 VSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           V+KVF R+I +RD   +HH +DG CSC +YW
Sbjct: 607 VTKVFGREIVVRDGSRFHHMKDGKCSCHDYW 637


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/552 (38%), Positives = 320/552 (57%), Gaps = 43/552 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVC---GRVRDARWVFDESDDLDVVSWNSMINGYVRNG--- 56
           +++    D  V   LI  Y+ C   G +  AR +FD+  D +V SW +MI GYV+ G   
Sbjct: 298 IRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYD 357

Query: 57  ----EILEGLKLFDKMPQRNDVS---------------------------------WNSI 79
               ++  G+ L   +P     S                                  NS+
Sbjct: 358 EEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSL 417

Query: 80  LGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS 139
           +    R G +DDA + F+ + +++L+S+  +I  +A+N   +EAL LF E++   +  ++
Sbjct: 418 ISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASA 477

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
               SLLS  A +G +  G  +++ + K  +KL+  +C ALI MY++CG+I+ A QVF  
Sbjct: 478 FTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFED 537

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
             D++V ++TS I G A +G + +A ELF  M  +G+ P+ ++YIAVLSACSH+G V +G
Sbjct: 538 MEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEG 597

Query: 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACR 319
           + +F SM+  HG+ P ++HYACMVD+LGR+G L EA  FI SMP K D ++W T LGACR
Sbjct: 598 WKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACR 657

Query: 320 VHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGC 379
           VH N E+G+    M+IE + +    YILLSN+Y  T K +    +RK M+++ + +  GC
Sbjct: 658 VHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASTSKWDEVSNIRKAMKEKNLIKEAGC 717

Query: 380 SLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETV 439
           S +E++  VH+F  GD SH K  EIY   + +  KIK  GY      V+ D+EEE+KE +
Sbjct: 718 SWVEVENKVHKFYVGDTSHPKAAEIYDELQNLSVKIKKLGYVPNLDFVLHDVEEEQKEKL 777

Query: 440 IGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHH 499
           +  HSEK+A+AFGLI T     IR+ KN+RIC DCHSA+K +S    R+I +RD   +HH
Sbjct: 778 LFQHSEKIAVAFGLISTSKMKPIRVFKNLRICGDCHSAIKYISMATGREIIVRDANRFHH 837

Query: 500 FEDGSCSCLEYW 511
            +DG CSC EYW
Sbjct: 838 IKDGRCSCNEYW 849



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 154/344 (44%), Gaps = 55/344 (15%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFD-ESDDLDVVSWNSMINGYVRNGEILE 60
           + ++    D    NSLI  YS CG+   A  +F       D++SW++M++ +  N     
Sbjct: 92  LTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFR 151

Query: 61  GLKLFDKMPQR----NDVSW----------------NSILGGLVRFGSVD-DAC------ 93
            L  F  M +     N+  +                +SI G +V+ G +  D C      
Sbjct: 152 ALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLI 211

Query: 94  --------------RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS 139
                         +VF +MP+R+ V+W ++I+   Q G   EA+ LF EM     EP+ 
Sbjct: 212 DMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDR 271

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC---GSIDLAMQV 196
             L  ++SACA +  L  G  ++S   +  + LD  +   LI+MYAKC   GS+  A ++
Sbjct: 272 FTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKI 331

Query: 197 FHSYGDKDVSAYTSAIFG-LAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGW 255
           F    D +V ++T+ I G +   G+  EA +LF  M    + P+  ++ + L AC++L  
Sbjct: 332 FDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAA 391

Query: 256 VEKGFYYFHSMFDVHGIKPELDHYAC----MVDLLGRAGLLEEA 295
           +  G   F      H +K       C    ++ +  R+G +++A
Sbjct: 392 LRIGEQVF-----THAVKLGFSSVNCVANSLISMYARSGRIDDA 430



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 105/229 (45%), Gaps = 4/229 (1%)

Query: 63  KLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQM-PKRSLVSWVVLISGFAQNGRPK 121
           KL     Q + V+ NS++    + G  + A  +F  M   R L+SW  ++S FA N    
Sbjct: 91  KLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGF 150

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC-IKLDSILCAAL 180
            AL  F +M      PN     +   AC+    +  G+ ++ ++ K   ++ D  +   L
Sbjct: 151 RALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGL 210

Query: 181 IDMYAKC-GSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
           IDM+ K  G +  A +VF    +++   +T  I  L   G++ EA +LF  M   G  PD
Sbjct: 211 IDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPD 270

Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGR 288
             +   V+SAC+++  +  G    HS    HG+  +     C++++  +
Sbjct: 271 RFTLSGVISACANMELLLLG-QQLHSQAIRHGLTLDRCVGCCLINMYAK 318



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 85/168 (50%), Gaps = 16/168 (9%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K+    +  V N+LI  YS CG +  A  VF++ +D +V+SW S+I G+ ++G   + 
Sbjct: 503 VIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQA 562

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQM-------PKRSLVSWVVL 110
           L+LF KM +     N V++ ++L      G V++  + F  M       P+    + +V 
Sbjct: 563 LELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVD 622

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
           I G  ++G   EA+     + S+  + ++ +  + L AC   G L+ G
Sbjct: 623 ILG--RSGSLSEAIQF---INSMPYKADALVWRTFLGACRVHGNLELG 665



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 89/203 (43%), Gaps = 5/203 (2%)

Query: 116 QNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI 175
            NGR  +A++    M      P+       L  C +  + D G  V+  + +  ++LDS+
Sbjct: 43  NNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSV 102

Query: 176 LCAALIDMYAKCGSIDLAMQVFHSYG-DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK 234
              +LI +Y+KCG  + A  +F   G  +D+ ++++ +   A N     A   F +M   
Sbjct: 103 TLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIEN 162

Query: 235 GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLL--GRAGLL 292
           G  P+   + A   ACS   +V  G   F  +     ++ ++     ++D+   GR  L+
Sbjct: 163 GYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLV 222

Query: 293 EEAENFIASMPMKPDNVIWGTLL 315
              + F   MP + + V W  ++
Sbjct: 223 SAFKVF-EKMPER-NAVTWTLMI 243


>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
          Length = 541

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/429 (47%), Positives = 289/429 (67%), Gaps = 4/429 (0%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL---DLEPNSAILV 143
           G VD A  +F  MP+R+++SW  +I+G+ + G+ KEALALFREMQ L   D+ PN   + 
Sbjct: 113 GLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMS 172

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG-D 202
            +L+AC +LGAL++G W ++YI K  + +D +L  ALIDMYAKCGS++ A  VF + G +
Sbjct: 173 GVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPN 232

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           KDV A+++ I GLAM+G + E   LF  M ++G+ P++++++AV  AC H G V +G  Y
Sbjct: 233 KDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDY 292

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
              M + + I P + HY CMVDL GRAG ++EA N + SMPM+PD ++WG LL   R+H 
Sbjct: 293 LRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHG 352

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           + E  +     LIE +  + G Y+LLSN+Y +  + E+   VR  M    IK+ PGCSLI
Sbjct: 353 DIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLI 412

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E+ GV+HEF  GD SH +T++I+   EEI++++K  GY   T+ V+ D++EE KE  +  
Sbjct: 413 EVGGVLHEFFVGDDSHPETRQIHMMLEEILERLKVEGYVGNTKEVLLDLDEEGKELALSL 472

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSEKLALA+G + T PG+ IRIVKN+RIC DCH A+K++SKVF R+I +RD   +HHF  
Sbjct: 473 HSEKLALAYGFLKTSPGTPIRIVKNLRICRDCHVAIKMISKVFDREIIVRDCNRFHHFTQ 532

Query: 503 GSCSCLEYW 511
           G CSC +YW
Sbjct: 533 GLCSCRDYW 541



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 121/271 (44%), Gaps = 46/271 (16%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++   A D FV+ SLI  YS  G V  AR +F    + +V+SW+ MINGYVR G+  E 
Sbjct: 90  ILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEA 149

Query: 62  LKLFDKMPQR--NDVSWNSI-----------LGGL------------------------- 83
           L LF +M     NDV  N             LG L                         
Sbjct: 150 LALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTAL 209

Query: 84  ----VRFGSVDDACRVFNQM-PKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPN 138
                + GSV+ A  VF+ + P + +++W  +ISG A +G  +E + LF +M +  + PN
Sbjct: 210 IDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPN 269

Query: 139 SAILVSLLSACAQLGALDYG-NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVF 197
           +   +++  AC   G +  G +++    +   I         ++D+Y + G I  A  V 
Sbjct: 270 AVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVV 329

Query: 198 HSYG-DKDVSAYTSAIFGLAMNGHSIEAFEL 227
            S   + DV  + + + G  M+G  IE  EL
Sbjct: 330 KSMPMEPDVLVWGALLSGSRMHG-DIETCEL 359



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 105/227 (46%), Gaps = 9/227 (3%)

Query: 107 WVVLISGFAQ-----NGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161
           W  LI    Q      G     +++F  M+   ++P+      LL + A    L  G  V
Sbjct: 27  WNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGRSV 86

Query: 162 YSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHS 221
           ++ I +  + +D  +  +LI MY+  G +D+A  +F    +++V +++  I G    G  
Sbjct: 87  HAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAVMPERNVISWSCMINGYVRCGQY 146

Query: 222 IEAFELFENMKSKGIS---PDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDH 278
            EA  LF  M+  G++   P+  +   VL+AC  LG +E G  + H+  D  G+  ++  
Sbjct: 147 KEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHG-KWAHAYIDKCGMPVDVVL 205

Query: 279 YACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAE 325
              ++D+  + G +E+A    +++    D + W  ++    +H  AE
Sbjct: 206 GTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAE 252


>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/557 (39%), Positives = 341/557 (61%), Gaps = 46/557 (8%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVC--GRVRDARWVFDESDDLDVVSWNSMINGYVRNGEI 58
           ++++    ++    + LI F ++   G +  AR +F +  + D    N+MI GY R+   
Sbjct: 33  LLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTMIRGYARSQNP 92

Query: 59  LEGLKLFDKMPQR----NDVSWNSILGGLVRFGSVD------------------------ 90
            E + L+  M +R    ++ ++  +L    R G+V                         
Sbjct: 93  YEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINAL 152

Query: 91  -----------DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD-LEPN 138
                       AC VF++   R +V+W ++I+     G  ++A  L  EM  LD L P+
Sbjct: 153 IQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPD 212

Query: 139 SAILVSLLSACAQLGALDYGNWVYSY---IQKKCIKLDSILCAALIDMYAKCGSIDLAMQ 195
              +VSL+ ACAQLG L+ G +++SY   + K  I  D +L  AL+DMYAKCGSIDLA+Q
Sbjct: 213 EVTMVSLVPACAQLGNLERGKFLHSYSKELDKFEINCDLVLETALVDMYAKCGSIDLALQ 272

Query: 196 VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGW 255
           VF     ++V  + + I GLAM+GH  +A  LF+ M+   + PD +++IA+L ACSH G 
Sbjct: 273 VFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGL 332

Query: 256 VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
           V++G   F +M +   I+P ++HY C+VDLL RA  +++A  FI +MP+K ++V+W TLL
Sbjct: 333 VDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLL 392

Query: 316 GACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKR 375
           GACR   + ++ ++IG  +IE + +  GRY++LSN+Y    + ++A ++RK M+ + I++
Sbjct: 393 GACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEK 452

Query: 376 APGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVE-TRSVMFDIEEE 434
            PGCS IEL+G++H+F+AGDRSH +T++IY   EE+ +++   G +V  T +V+FDIEEE
Sbjct: 453 TPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTANVLFDIEEE 512

Query: 435 EKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDR 494
           EKE  +  HSEKLA+A GLI T  GS IRIVKN+R+C+DCHS +K+ SKV+ R+I  RDR
Sbjct: 513 EKEHSLFLHSEKLAIALGLISTPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNREIVARDR 572

Query: 495 KHYHHFEDGSCSCLEYW 511
             +HHF++GSCSC+++W
Sbjct: 573 SRFHHFKEGSCSCMDFW 589


>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/540 (39%), Positives = 326/540 (60%), Gaps = 40/540 (7%)

Query: 12  FVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM--- 68
           F K+ +    S+   +  A  +F++    ++ +WN+MI G+  +      ++LF +M   
Sbjct: 70  FNKHLIFALVSLSAPMSFAAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAA 129

Query: 69  ----PQRN-------------DVSW--------------------NSILGGLVRFGSVDD 91
               P  +             DVS                     NS++     FG  + 
Sbjct: 130 SSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVFGFAES 189

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           A +VF  M  R  V+W  +I+GFA NG P EAL L+REM S  +EP+   +VSLLSAC +
Sbjct: 190 AYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVE 249

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSA 211
           LGAL  G  V+ Y+ K  +  +     AL+D+Y+KCG+   A +VF    ++ V ++TS 
Sbjct: 250 LGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSL 309

Query: 212 IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG 271
           I GLA+NG   EA +LF  ++ +G+ P  I+++ VL ACSH G +++GF YF  M + +G
Sbjct: 310 IVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYG 369

Query: 272 IKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIG 331
           I P ++H+ CMVDLL RAG + +A ++I +MP+ P+ VIW TLLGAC +H + E+G+   
Sbjct: 370 ILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVAR 429

Query: 332 NMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEF 391
             +   +Q H G ++LLSN+Y    +  + + VRK M  + +K+ PG SL+EL   V+EF
Sbjct: 430 AEIQRLEQRHSGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEF 489

Query: 392 LAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAF 451
           + GDRSH +++E Y    +I + +K  GY   T +V+ DIEEEEKET + +H+EK+A+AF
Sbjct: 490 IMGDRSHPQSEETYAMLAKITQLLKIEGYVPRTVNVLADIEEEEKETALSHHTEKVAIAF 549

Query: 452 GLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            L+ T PG+ IRI+KN+R+C+DCH A+KL+SKVF+R+I +RDR  +HHF+DGSCSC +YW
Sbjct: 550 MLVNTPPGTPIRIMKNLRVCADCHLAIKLISKVFEREIIVRDRSRFHHFKDGSCSCKDYW 609



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 117/248 (47%), Gaps = 3/248 (1%)

Query: 69  PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFR 128
           PQ  D + + I   +     +  A ++FNQ+   ++ +W  +I GFA++  P  A+ LF 
Sbjct: 65  PQNPDFNKHLIFALVSLSAPMSFAAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFS 124

Query: 129 EMQSLD-LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC 187
           +M +   + P++     L  A A+L  +  G  ++S + +        +  +L+ MY+  
Sbjct: 125 QMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVF 184

Query: 188 GSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVL 247
           G  + A QVF     +D  A+ S I G A+NG   EA  L+  M S+G+ PD  + +++L
Sbjct: 185 GFAESAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLL 244

Query: 248 SACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPD 307
           SAC  LG +  G      M  V G+         ++DL  + G   +A+     M  +  
Sbjct: 245 SACVELGALALGERVHMYMVKV-GLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEER-S 302

Query: 308 NVIWGTLL 315
            V W +L+
Sbjct: 303 VVSWTSLI 310



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 129/299 (43%), Gaps = 74/299 (24%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +VV+N F    FV+NSL+  YSV G    A  VF+     D V+WNS+ING+  NG   E
Sbjct: 161 VVVRNGFDSLRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVINGFALNGMPNE 220

Query: 61  GLKLFDKMPQ---------------------------------------RNDVSWNSILG 81
            L L+ +M                                         +N  + N++L 
Sbjct: 221 ALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLD 280

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G+  DA +VF++M +RS+VSW  LI G A NG   EAL LF E++   L+P+   
Sbjct: 281 LYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEIT 340

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI-LCAALIDMYAKCGSIDLAMQVFHSY 200
            V +L AC+  G LD G   +  ++++   L  I     ++D+  + G +          
Sbjct: 341 FVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKV---------- 390

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
           GD                     A++   NM    + P+++ +  +L AC+  G +E G
Sbjct: 391 GD---------------------AYDYIRNMP---VPPNAVIWRTLLGACTIHGHLELG 425



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 12/175 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +VK     +    N+L+  YS CG  RDA+ VFDE ++  VVSW S+I G   NG   E 
Sbjct: 263 MVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEA 322

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVV-----LIS 112
           LKLF ++ ++    +++++  +L      G +D+    F +M +   +   +     ++ 
Sbjct: 323 LKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVD 382

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK 167
              + G+  +A    R M    + PN+ I  +LL AC   G L+ G    + IQ+
Sbjct: 383 LLCRAGKVGDAYDYIRNM---PVPPNAVIWRTLLGACTIHGHLELGEVARAEIQR 434


>gi|212721478|ref|NP_001131178.1| uncharacterized protein LOC100192486 [Zea mays]
 gi|194690792|gb|ACF79480.1| unknown [Zea mays]
          Length = 617

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/509 (42%), Positives = 301/509 (59%), Gaps = 32/509 (6%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           V+   A D  V++ ++  Y+  G V  +R  F E    DVV   +M+             
Sbjct: 141 VRWGHAADPHVQSGVLSMYAALGDVASSRAAFAEIACPDVVCVTAMV------------- 187

Query: 63  KLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKE 122
                               L   G VD A  +F+ MP+R  V+W  +I+G+   GR +E
Sbjct: 188 ------------------AALAAGGDVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSRE 229

Query: 123 ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182
           AL LF EM S       A LVS+L+ACAQ+G LD G WV+ Y++ + +++   L  AL+D
Sbjct: 230 ALMLFDEMLSAGTTVGEATLVSVLTACAQIGTLDRGKWVHWYVRSRGMQMSIKLGTALVD 289

Query: 183 MYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSIS 242
           MY+KCG++  AM+VF S  +++V  +TSA+ GLAMNG   E  +LF+ M+  GI P+ +S
Sbjct: 290 MYSKCGAVVTAMEVFESMAERNVYTWTSAVSGLAMNGMGTECLQLFKRMEGAGIQPNGVS 349

Query: 243 YIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM 302
           ++AVL  CS  G V++G   F SM D +G+ P  +HY CMVDL GRAG L++A +FI  M
Sbjct: 350 FVAVLRGCSMAGLVDEGRACFDSM-DKYGVDPWPEHYGCMVDLYGRAGRLDDAISFINDM 408

Query: 303 PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAE 362
           PM+P   +WG LL A R+H + ++G+   + L+  +  +D  ++ LSNIY E+   +   
Sbjct: 409 PMEPHEGVWGALLNASRIHNSVDLGKYALDKLLAIESENDAAHVQLSNIYAESQNWKGVS 468

Query: 363 EVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNV 422
            VR  M+ + +K+ PG S IE+DG VHEF  G R H +  EI     E+ ++++  GY  
Sbjct: 469 RVRGMMKAKGVKKVPGWSTIEVDGKVHEFYVGGRLHPRYNEIELMLAEMDRRLRLQGYTA 528

Query: 423 ETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVS 482
            TR V+FDIEEEEKE  I  HSEKLALAFGLI       IRIVKN+R+C DCH  +KLVS
Sbjct: 529 NTREVLFDIEEEEKEGAISLHSEKLALAFGLIVLPEDVEIRIVKNLRVCMDCHRYIKLVS 588

Query: 483 KVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           KVF R+I +RDR  +HHF+ G CSC +YW
Sbjct: 589 KVFNREIVMRDRNRFHHFKGGECSCRDYW 617


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/553 (38%), Positives = 337/553 (60%), Gaps = 48/553 (8%)

Query: 7    FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFD 66
            F  D+FV ++LI  YS CG+++DAR +FDE    +VVSW SMI GYV+N +    L LF 
Sbjct: 1173 FETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFK 1232

Query: 67   KMPQR-------NDVSWNSIL---------------------GGLVRFG---------SV 89
               +        N+V  +S++                     G +V+ G         ++
Sbjct: 1233 DFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTL 1292

Query: 90   DDA---C-------RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM-QSLDLEPN 138
             DA   C       +VF+ M ++  +SW  +I+ +AQ+G   EAL +F  M + + +  N
Sbjct: 1293 MDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYN 1352

Query: 139  SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH 198
            +  L ++L ACA  GAL  G  ++  + K  ++ +  +  ++IDMY KCG +++A + F 
Sbjct: 1353 AVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFD 1412

Query: 199  SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEK 258
               +K+V ++T+ + G  M+G + EA ++F  M   G+ P+ I++++VL+ACSH G VE+
Sbjct: 1413 RMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEE 1472

Query: 259  GFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
            G+++F++M   + I+P ++HY CMVDL GRAG L EA N I  M MKPD V+WG+LLGAC
Sbjct: 1473 GWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGAC 1532

Query: 319  RVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPG 378
            R+H+N ++G+     L E D ++ G Y+LLSN+Y +  +  + E +R  M+ R++ + PG
Sbjct: 1533 RIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPG 1592

Query: 379  CSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKET 438
             SL+EL G VH FL GD+ H   + IY++ E++  +++  GY     SV+ D++EEEKE 
Sbjct: 1593 FSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGYVPNMTSVLHDVDEEEKEI 1652

Query: 439  VIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYH 498
            ++  HSEKLA+AFG++ + PG+ I I+KN+R+C DCH+ +KL+SK+  R   +RD K +H
Sbjct: 1653 ILRVHSEKLAVAFGVMNSAPGTTINIIKNLRVCGDCHTVIKLISKLVHRDFVVRDSKRFH 1712

Query: 499  HFEDGSCSCLEYW 511
            HF+DG CSC +YW
Sbjct: 1713 HFKDGVCSCGDYW 1725



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 111/294 (37%), Positives = 170/294 (57%), Gaps = 31/294 (10%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K  F+ DVFV+N+LI FY  CG  R A                               
Sbjct: 151 LIKYGFSGDVFVQNNLIDFYFKCGHTRFA------------------------------- 179

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
           LK+F+KM  RN VSW +++ GL+  G + +A R+F+++P +++VSW  +I+G+ +N +P+
Sbjct: 180 LKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPE 239

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
           EAL LF+ MQ+ ++ PN   +VSL+ AC ++G L  G  ++ Y  K CI++   L  ALI
Sbjct: 240 EALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALI 299

Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
           DMY+KCGSI  A++VF +   K +  + S I  L ++G   EA  LF  M+   + PD+I
Sbjct: 300 DMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAI 359

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA 295
           ++I VL AC H+  V++G  YF  M   +GI P  +HY CM +L  R+  L+EA
Sbjct: 360 TFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEA 413



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 124/305 (40%), Gaps = 64/305 (20%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           G +  A  +F Q+      +W ++I     NG  ++AL L++ M    +  +      ++
Sbjct: 73  GRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVI 132

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH-------- 198
            AC    ++D G  V+  + K     D  +   LID Y KCG    A++VF         
Sbjct: 133 KACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVV 192

Query: 199 ----------SYGD-------------KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG 235
                     S GD             K+V ++T+ I G   N    EA ELF+ M+++ 
Sbjct: 193 SWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAEN 252

Query: 236 ISPDSISYIAVLSACSHLG---------------WVEKGFYYFHSMFDVHG--------- 271
           I P+  + ++++ AC+ +G                +E G Y   ++ D++          
Sbjct: 253 IFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAI 312

Query: 272 ------IKPELDHYACMVDLLGRAGLLEEAENFIASMP---MKPDNVIWGTLLGACRVHR 322
                  +  L  +  M+  LG  GL +EA N  + M    +KPD + +  +L AC   +
Sbjct: 313 EVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIK 372

Query: 323 NAEMG 327
           N + G
Sbjct: 373 NVKEG 377



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 91/199 (45%), Gaps = 19/199 (9%)

Query: 2    VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
            V+K    Y+V V  S+I  Y  CGRV  A+  FD   + +V SW +M+ GY  +G   E 
Sbjct: 1379 VIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEA 1438

Query: 62   LKLFDKM----PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLIS 112
            L +F KM     + N +++ S+L      G V++    FN M  +      +  +  ++ 
Sbjct: 1439 LDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVD 1498

Query: 113  GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKL 172
             F + G   EA  L + M+   ++P+  +  SLL AC     +D G        +K  +L
Sbjct: 1499 LFGRAGCLNEAYNLIKRMK---MKPDFVVWGSLLGACRIHKNVDLGEIA----AQKLFEL 1551

Query: 173  DSILCA---ALIDMYAKCG 188
            D   C     L ++YA  G
Sbjct: 1552 DPDNCGYYVLLSNLYADAG 1570



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 8/161 (4%)

Query: 101  KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNW 160
            K ++ SW  +I+  A+ G   EAL  F  ++ L L P  +     + +C+ L  L  G  
Sbjct: 1104 KSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRM 1163

Query: 161  VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGH 220
             +        + D  + +ALIDMY+KCG +  A  +F     ++V ++TS I G   N  
Sbjct: 1164 SHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQ 1223

Query: 221  SIEAFELFENM--------KSKGISPDSISYIAVLSACSHL 253
            +  A  LF++             +  DS+  ++VLSACS +
Sbjct: 1224 ADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRV 1264



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 9/145 (6%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +KN     V++  +LI  YS CG ++DA  VF+      + +WNSMI     +G   E L
Sbjct: 284 IKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEAL 343

Query: 63  KLFDKMPQRN----DVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWV-----VLISG 113
            LF +M + N     +++  +L   V   +V + C  F +M +   ++ +      +   
Sbjct: 344 NLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTEL 403

Query: 114 FAQNGRPKEALALFREMQSLDLEPN 138
           +A++    EA    +E+ SL   P+
Sbjct: 404 YARSNNLDEAFKSTKEVGSLANSPS 428



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 75/157 (47%), Gaps = 4/157 (2%)

Query: 197  FHSYGDK-DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGW 255
            F+ Y DK +V ++ S I  LA  G S+EA   F +++  G+ P   S+   + +CS L  
Sbjct: 1098 FYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCD 1157

Query: 256  VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
            +  G       F V G + +L   + ++D+  + G L++A      +P++ + V W +++
Sbjct: 1158 LVSGRMSHQQAF-VFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLR-NVVSWTSMI 1215

Query: 316  GACRVHRNAEMGQRI-GNMLIESDQNHDGRYILLSNI 351
                 +  A+    +  + L E  +  DG  + L ++
Sbjct: 1216 TGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSV 1252



 Score = 47.0 bits (110), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 45/213 (21%), Positives = 93/213 (43%), Gaps = 5/213 (2%)

Query: 161 VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGH 220
           +++ I +  +  D +L   LI +Y+  G I  A+ +F+   +     +   I    +NG 
Sbjct: 46  IHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGL 105

Query: 221 SIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA 280
           S +A  L++NM  +GI+ D  ++  V+ AC++   ++ G    H     +G   ++    
Sbjct: 106 SEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLG-KVVHGSLIKYGFSGDVFVQN 164

Query: 281 CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQN 340
            ++D   + G    A      M ++ + V W T++       + +  +RI +   E    
Sbjct: 165 NLIDFYFKCGHTRFALKVFEKMRVR-NVVSWTTVISGLISCGDLQEARRIFD---EIPSK 220

Query: 341 HDGRYILLSNIYVETLKGENAEEVRKTMRKRKI 373
           +   +  + N Y+   + E A E+ K M+   I
Sbjct: 221 NVVSWTAMINGYIRNQQPEEALELFKRMQAENI 253


>gi|147806246|emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]
          Length = 558

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 196/438 (44%), Positives = 295/438 (67%), Gaps = 5/438 (1%)

Query: 79  ILGGLVRF----GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL- 133
           +  GL+ F    G +D A + F +MP+R LVSW  +I+ FA+NG   EALALF+ MQ + 
Sbjct: 121 VQNGLIHFYGCCGFLDFALKAFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVG 180

Query: 134 DLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLA 193
            ++P+  I++S++SA + LG L+ G W+  +I +  ++    L  AL+DM+++CG I+ +
Sbjct: 181 TVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEES 240

Query: 194 MQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL 253
           M+VF   G+++V  +T+ I GLA++G S EA  +F  M++ G  PD +++  VL ACSH 
Sbjct: 241 MRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHG 300

Query: 254 GWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGT 313
           G V +G++ F S+ + +G++P  +HY CMVDLLGRAGLL EA  F+  MP++P+++IW T
Sbjct: 301 GLVSEGWHVFESIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIRPNSIIWRT 360

Query: 314 LLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKI 373
           LLGAC  H   E+ +++   + E D  HDG Y+LLSN+Y    +      VR +MR+++I
Sbjct: 361 LLGACVNHNYIELAEKVKEKINELDSYHDGDYVLLSNVYGGVGRWAEKAGVRNSMREKRI 420

Query: 374 KRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEE 433
            + PGCSLI ++ ++HEF+AGD +H + + I +F   ++  +K  GY  +  +V+FDIEE
Sbjct: 421 SKKPGCSLINVNHLIHEFVAGDNNHPQFESIREFLVSMIDSLKVVGYTPDISNVLFDIEE 480

Query: 434 EEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRD 493
           EEKE+ +GYHSEKLA+AF L+C K    IR++KN+RIC DCH  MK  S VF+R+I IRD
Sbjct: 481 EEKESTLGYHSEKLAVAFALLCFKDSRTIRVMKNLRICHDCHCFMKYASDVFEREIIIRD 540

Query: 494 RKHYHHFEDGSCSCLEYW 511
           R  +HHF  GSCSC +YW
Sbjct: 541 RNRFHHFSKGSCSCRDYW 558



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 138/305 (45%), Gaps = 50/305 (16%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++ K  F  DV+V+N LI FY  CG +  A   F+E  + D+VSW+SMI  + +NG   E
Sbjct: 109 LLFKLGFDSDVYVQNGLIHFYGCCGFLDFALKAFEEMPERDLVSWSSMIACFAKNGFGYE 168

Query: 61  GLKLFDKMP-----------------------------------QRNDVSWNSILGGLV- 84
            L LF +M                                     RN + +   LG  + 
Sbjct: 169 ALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTALV 228

Query: 85  ----RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
               R G ++++ RVF++M +R++++W  LI+G A +GR  EAL +F EM++   +P+  
Sbjct: 229 DMFSRCGCIEESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHV 288

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSIL--CAALIDMYAKCGSIDLAMQVFH 198
               +L AC+  G +  G  V+  I+ +   ++ +      ++D+  + G ++ A +   
Sbjct: 289 TFTGVLVACSHGGLVSEGWHVFESIRNE-YGMEPLPEHYGCMVDLLGRAGLLNEACKFVD 347

Query: 199 SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI---SYIAVLSACSHLG- 254
               +  S     + G  +N + I   EL E +K K    DS     Y+ + +    +G 
Sbjct: 348 GMPIRPNSIIWRTLLGACVNHNYI---ELAEKVKEKINELDSYHDGDYVLLSNVYGGVGR 404

Query: 255 WVEKG 259
           W EK 
Sbjct: 405 WAEKA 409



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 96/199 (48%), Gaps = 7/199 (3%)

Query: 129 EMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCG 188
           +M    + P+      +L ACA+L     G  ++S + K     D  +   LI  Y  CG
Sbjct: 77  KMTMAGVSPDHFTFPFVLKACARLQT---GLDLHSLLFKLGFDSDVYVQNGLIHFYGCCG 133

Query: 189 SIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG-ISPDSISYIAVL 247
            +D A++ F    ++D+ +++S I   A NG   EA  LF+ M+  G + PD +  ++V+
Sbjct: 134 FLDFALKAFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVV 193

Query: 248 SACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPD 307
           SA S LG +E G  +       +G++  +     +VD+  R G +EE+      M  + +
Sbjct: 194 SAISILGDLELG-KWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGER-N 251

Query: 308 NVIWGTLLGACRVH-RNAE 325
            + W  L+    VH R+AE
Sbjct: 252 VLTWTALINGLAVHGRSAE 270


>gi|414880744|tpg|DAA57875.1| TPA: hypothetical protein ZEAMMB73_657034, partial [Zea mays]
          Length = 1822

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/510 (41%), Positives = 301/510 (59%), Gaps = 32/510 (6%)

Query: 2    VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
             V+   A D  V++ ++  Y+  G V  +R  F E    DVV   +M+            
Sbjct: 1345 AVRWGHAADPHVQSGVLSMYAALGDVASSRAAFAEIACPDVVCVTAMV------------ 1392

Query: 62   LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
                                 L   G VD A  +F+ MP+R  V+W  +I+G+   GR +
Sbjct: 1393 -------------------AALAAGGDVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSR 1433

Query: 122  EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
            EAL LF EM S       A LVS+L+ACAQ+G LD G WV+ Y++ + +++   L  AL+
Sbjct: 1434 EALMLFDEMLSAGTTVGEATLVSVLTACAQIGTLDRGKWVHWYVRSRGMQMSIKLGTALV 1493

Query: 182  DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
            DMY+KCG++  AM+VF S  +++V  +TSA+ GLAMNG   E  +LF+ M+  GI P+ +
Sbjct: 1494 DMYSKCGAVVTAMEVFESMAERNVYTWTSAVSGLAMNGMGTECLQLFKRMEGAGIQPNGV 1553

Query: 242  SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
            S++AVL  CS  G V++G   F SM D +G+ P  +HY CMVDL GRAG L++A +FI  
Sbjct: 1554 SFVAVLRGCSMAGLVDEGRACFDSM-DKYGVDPWPEHYGCMVDLYGRAGRLDDAISFIND 1612

Query: 302  MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361
            MPM+P   +WG LL A R+H + ++G+   + L+  +  +D  ++ LSNIY E+   +  
Sbjct: 1613 MPMEPHEGVWGALLNASRIHNSVDLGKYALDKLLAIESENDAAHVQLSNIYAESQNWKGV 1672

Query: 362  EEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYN 421
              VR  M+ + +K+ PG S IE+DG VHEF  G R H +  EI     E+ ++++  GY 
Sbjct: 1673 SRVRGMMKAKGVKKVPGWSTIEVDGKVHEFYVGGRLHPRYNEIELMLAEMDRRLRLQGYT 1732

Query: 422  VETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLV 481
              TR V+FDIEEEEKE  I  HSEKLALAFGLI       IRIVKN+R+C DCH  +KLV
Sbjct: 1733 ANTREVLFDIEEEEKEGAISLHSEKLALAFGLIVLPEDVEIRIVKNLRVCMDCHRYIKLV 1792

Query: 482  SKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            SKVF R+I +RDR  +HHF+ G CSC +YW
Sbjct: 1793 SKVFNREIVMRDRNRFHHFKGGECSCRDYW 1822


>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/540 (39%), Positives = 326/540 (60%), Gaps = 40/540 (7%)

Query: 12  FVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM--- 68
           F K+ +    S+   +  A  +F++    ++ +WN+MI G+  +      ++LF +M   
Sbjct: 70  FNKHLIFALVSLSAPMSFAAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAA 129

Query: 69  ----PQRN-------------DVSW--------------------NSILGGLVRFGSVDD 91
               P  +             DVS                     NS++      GS+  
Sbjct: 130 SSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVLGSLXS 189

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           A +VF  M  R  V+W  +I+GFA NG P EAL L+REM S  +EP+   +VSLLSAC +
Sbjct: 190 AYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVE 249

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSA 211
           LGAL  G  V+ Y+ K  +  +     AL+D+Y+KCG+   A +VF    ++ V ++TS 
Sbjct: 250 LGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSL 309

Query: 212 IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG 271
           I GLA+NG   EA +LF  ++ +G+ P  I+++ VL ACSH G +++GF YF  M + +G
Sbjct: 310 IVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYG 369

Query: 272 IKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIG 331
           I P ++H+ CMVDLL RAG + +A ++I +MP+ P+ VIW TLLGAC +H + E+G+   
Sbjct: 370 ILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVAR 429

Query: 332 NMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEF 391
             +   +Q H G ++LLSN+Y    +  + + VRK M  + +K+ PG SL+EL   V+EF
Sbjct: 430 AEIQRLEQRHSGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEF 489

Query: 392 LAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAF 451
           + GDRSH +++E Y    +I + +K  GY   T +V+ DIEEEEKET + +H+EK+A+AF
Sbjct: 490 IMGDRSHPQSEETYAMLAKITQLLKIEGYVPRTVNVLADIEEEEKETALSHHTEKVAIAF 549

Query: 452 GLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            L+ T PG+ IRI+KN+R+C+DCH A+KL+SKVF+R+I +RDR  +HHF+DGSCSC +YW
Sbjct: 550 MLVNTPPGTPIRIMKNLRVCADCHLAIKLISKVFEREIIVRDRSRFHHFKDGSCSCKDYW 609



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 118/248 (47%), Gaps = 3/248 (1%)

Query: 69  PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFR 128
           PQ  D + + I   +     +  A ++FNQ+   ++ +W  +I GFA++  P  A+ LF 
Sbjct: 65  PQNPDFNKHLIFALVSLSAPMSFAAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFS 124

Query: 129 EMQSLD-LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC 187
           +M +   + P++     L  A A+L  +  G  ++S + +        +  +L+ MY+  
Sbjct: 125 QMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVL 184

Query: 188 GSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVL 247
           GS+  A QVF     +D  A+ S I G A+NG   EA  L+  M S+G+ PD  + +++L
Sbjct: 185 GSLXSAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLL 244

Query: 248 SACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPD 307
           SAC  LG +  G      M  V G+         ++DL  + G   +A+     M  +  
Sbjct: 245 SACVELGALALGERVHMYMVKV-GLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEER-S 302

Query: 308 NVIWGTLL 315
            V W +L+
Sbjct: 303 VVSWTSLI 310



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 130/299 (43%), Gaps = 74/299 (24%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +VV+N F    FV+NSL+  YSV G +  A  VF+     D V+WNS+ING+  NG   E
Sbjct: 161 VVVRNGFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVINGFALNGMPNE 220

Query: 61  GLKLFDKMPQ---------------------------------------RNDVSWNSILG 81
            L L+ +M                                         +N  + N++L 
Sbjct: 221 ALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLD 280

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G+  DA +VF++M +RS+VSW  LI G A NG   EAL LF E++   L+P+   
Sbjct: 281 LYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEIT 340

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI-LCAALIDMYAKCGSIDLAMQVFHSY 200
            V +L AC+  G LD G   +  ++++   L  I     ++D+  + G +          
Sbjct: 341 FVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKV---------- 390

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
           GD                     A++   NM    + P+++ +  +L AC+  G +E G
Sbjct: 391 GD---------------------AYDYIRNMP---VPPNAVIWRTLLGACTIHGHLELG 425



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 12/175 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +VK     +    N+L+  YS CG  RDA+ VFDE ++  VVSW S+I G   NG   E 
Sbjct: 263 MVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEA 322

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVV-----LIS 112
           LKLF ++ ++    +++++  +L      G +D+    F +M +   +   +     ++ 
Sbjct: 323 LKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVD 382

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK 167
              + G+  +A    R M    + PN+ I  +LL AC   G L+ G    + IQ+
Sbjct: 383 LLCRAGKVGDAYDYIRNM---PVPPNAVIWRTLLGACTIHGHLELGEVARAEIQR 434


>gi|413932592|gb|AFW67143.1| hypothetical protein ZEAMMB73_912965 [Zea mays]
          Length = 619

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 193/423 (45%), Positives = 288/423 (68%)

Query: 89  VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148
           + DA  VF++M K S V+W  +I G+ ++G   +A+ LFREMQ+  + P+   ++ +L+A
Sbjct: 197 LGDARNVFDRMAKSSAVTWSAMIGGYVRSGLSSDAVGLFREMQASGVRPDEVTMIGVLAA 256

Query: 149 CAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAY 208
            A LGAL+   WV  +++K+ I     LC ALID  AKCG +D AM VF    ++ + ++
Sbjct: 257 AADLGALELARWVGRFVEKEGIGKSVTLCNALIDALAKCGDLDGAMAVFQGMKERTIVSW 316

Query: 209 TSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD 268
           TS I  LAM G   EA  +FE MK+ G+ PD +++I VL+ACSH G V++G+ YF SM  
Sbjct: 317 TSVIDALAMEGRGKEAVAVFEEMKTAGVRPDDVAFIGVLTACSHAGMVDEGYGYFESMRM 376

Query: 269 VHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQ 328
            +GI P+++HY CMVD+ GRAG++E A  F+  MPMKP+ +IW TL+ ACR H   E+G+
Sbjct: 377 AYGIDPKIEHYGCMVDMFGRAGMVERAMEFVHKMPMKPNPIIWRTLVAACRAHGRLELGE 436

Query: 329 RIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVV 388
            I   L+     H+  Y++LSN+Y  T + +   E+R+ M KR IK+ PGCSL+ELDG V
Sbjct: 437 TITRNLLNEYPAHEANYVMLSNVYALTRRWKEKSEIRREMSKRGIKKVPGCSLVELDGEV 496

Query: 389 HEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLA 448
           HEF+AGD SH + +EIY   EE+ ++++  G+   T  V+ D++EE+KE  + +HSEKLA
Sbjct: 497 HEFIAGDESHPQWKEIYMMVEEMARELRRAGHISATSEVLLDLDEEDKEVALQWHSEKLA 556

Query: 449 LAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCL 508
           +AF L+ T PG+ +R+VKN+R+CSDCH+A+K +S V+ R+I +RDR  +H F++GSCSC 
Sbjct: 557 IAFVLLRTPPGTQVRVVKNLRVCSDCHAAIKCISLVYNREIIVRDRSRFHRFKNGSCSCN 616

Query: 509 EYW 511
           ++W
Sbjct: 617 DFW 619



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 113/243 (46%), Gaps = 52/243 (21%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGR--VRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +K  F  D +V N+LI  YS  G   + DAR VFD       V+W++MI GYVR+G   +
Sbjct: 171 LKFGFTTDQYVSNTLIHMYSCFGGEFLGDARNVFDRMAKSSAVTWSAMIGGYVRSGLSSD 230

Query: 61  GLKLFDKMPQ---RND-------------------VSW-----------------NSILG 81
            + LF +M     R D                     W                 N+++ 
Sbjct: 231 AVGLFREMQASGVRPDEVTMIGVLAAAADLGALELARWVGRFVEKEGIGKSVTLCNALID 290

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
            L + G +D A  VF  M +R++VSW  +I   A  GR KEA+A+F EM++  + P+   
Sbjct: 291 ALAKCGDLDGAMAVFQGMKERTIVSWTSVIDALAMEGRGKEAVAVFEEMKTAGVRPDDVA 350

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCI------KLDSILCAALIDMYAKCGSIDLAMQ 195
            + +L+AC+  G +D G   Y Y +   +      K++   C  ++DM+ + G ++ AM+
Sbjct: 351 FIGVLTACSHAGMVDEG---YGYFESMRMAYGIDPKIEHYGC--MVDMFGRAGMVERAME 405

Query: 196 VFH 198
             H
Sbjct: 406 FVH 408



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 16/171 (9%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V K      V + N+LI   + CG +  A  VF    +  +VSW S+I+     G   E 
Sbjct: 273 VEKEGIGKSVTLCNALIDALAKCGDLDGAMAVFQGMKERTIVSWTSVIDALAMEGRGKEA 332

Query: 62  LKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQM-------PKRSLVSWVVL 110
           + +F++M     + +DV++  +L      G VD+    F  M       PK  +  +  +
Sbjct: 333 VAVFEEMKTAGVRPDDVAFIGVLTACSHAGMVDEGYGYFESMRMAYGIDPK--IEHYGCM 390

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161
           +  F + G  + A+    +M    ++PN  I  +L++AC   G L+ G  +
Sbjct: 391 VDMFGRAGMVERAMEFVHKMP---MKPNPIIWRTLVAACRAHGRLELGETI 438


>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
          Length = 606

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 198/435 (45%), Positives = 294/435 (67%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N +++ Y   GE+ E   LF+KMPQR+ V+WN ++  L++ G  + A  +F++MP+R++ 
Sbjct: 167 NMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVR 226

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           SW  +I+G+ Q G+ KEA+ LF +M+   ++ N   +V++L+ACA LGALD G  ++ Y 
Sbjct: 227 SWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYS 286

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
            +   K +  +   LIDMY KCG ++ A +VF    ++ V ++++ I GLAM+G + EA 
Sbjct: 287 NRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEAL 346

Query: 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL 285
            LF +M   GI P+ +++I +L ACSH+G + +G  +F SM   +GI P+++HY CMVDL
Sbjct: 347 RLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDL 406

Query: 286 LGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRY 345
           L RAGLL EA  FI +MPMKP+ V+WG LLGACRVH+N EM +     L+E D  +DG Y
Sbjct: 407 LSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYY 466

Query: 346 ILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIY 405
           ++LSNIY E  + E+   VRK M+ R++K+ PG S I +DGVVHEF+AG+ SH  T++I+
Sbjct: 467 VVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIF 526

Query: 406 QFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIV 465
           Q WEE++++++  GY   T  V+ DIEE EK   +  HSEKLAL FGL+ T   + IRI+
Sbjct: 527 QRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLALVFGLMNTPAETPIRIM 586

Query: 466 KNIRICSDCHSAMKL 480
           KN+RIC DCHSA ++
Sbjct: 587 KNLRICEDCHSAFQI 601



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 108/255 (42%), Gaps = 33/255 (12%)

Query: 107 WVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQ 166
           W   +   A+   P +A+ LF  ++  D+ P++    S+L AC  L  L  G  ++  ++
Sbjct: 96  WNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVE 155

Query: 167 KKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD---------------------- 204
           K   + +  L   ++ +YA CG +  A  +F     +D                      
Sbjct: 156 KVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYD 215

Query: 205 ---------VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGW 255
                    V ++TS I G    G + EA  LF  M+  G+  + ++ +AVL+AC+ LG 
Sbjct: 216 LFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGA 275

Query: 256 VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
           ++ G    H   + HG K  +     ++D+  + G LEEA      M  +   V W  ++
Sbjct: 276 LDLGM-RIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEER-TVVSWSAMI 333

Query: 316 GACRVHRNAEMGQRI 330
           G   +H  AE   R+
Sbjct: 334 GGLAMHGRAEEALRL 348


>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
 gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
          Length = 604

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/553 (39%), Positives = 330/553 (59%), Gaps = 43/553 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSV---CGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEI 58
            +K +   D+ V   LI F ++      +  A  +FD+  D D++ +N M  GY R+   
Sbjct: 52  TIKTNLQSDISVLTKLINFCTLNPTTSYMDHAHHLFDQILDKDIILFNIMARGYARSNSP 111

Query: 59  LEGLKLFDKMP----QRNDVSWNSILG------------GL----VRFG----------- 87
                LF ++       +D +++S+L             GL    V+ G           
Sbjct: 112 YLAFSLFGELLCSGLLPDDYTFSSLLKACASSKALREGMGLHCFAVKLGLNHNIYICPTL 171

Query: 88  --------SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS 139
                    ++ A  VF++M +  +VS+  +I+G+A++ +P EAL+LFRE+Q+ ++EP  
Sbjct: 172 INMYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNIEPTD 231

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
             ++S++ +CA LGALD G W++ Y++KK       +  ALIDM+AKCGS+  A+ +F  
Sbjct: 232 VTMLSVIMSCALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEG 291

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
              +D  A+++ I   A +G  ++A  +FE MK +G+ PD I+++ +L ACSH G VE+G
Sbjct: 292 MRVRDTQAWSAMIVAFATHGDGLKAISMFEEMKREGVRPDEITFLGLLYACSHAGLVEQG 351

Query: 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACR 319
             YF+SM   +GI P + HY CMVDLLGRAG L+EA NF+  + +K   ++W TLL AC 
Sbjct: 352 RGYFYSMSKTYGITPGIKHYGCMVDLLGRAGHLDEAYNFVDKLEIKATPILWRTLLSACS 411

Query: 320 VHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGC 379
            H N EM +R+   + E D  H G Y++LSN+Y    + E+   +RK M+ R + + PGC
Sbjct: 412 THGNVEMAKRVIERIFELDDAHGGDYVILSNLYARVGRWEDVNHLRKLMKDRGVVKVPGC 471

Query: 380 SLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMF-DIEEEEKET 438
           S +E++ VVHEF +GD  H  + E+ +  +E++K+IK  GY  +T  V   D+EEE KE 
Sbjct: 472 SSVEVNNVVHEFFSGDGVHCVSVELRRALDELMKEIKLVGYVPDTSLVYHADMEEEGKEL 531

Query: 439 VIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYH 498
           V+ YHSEKLA+AFGL+ T PG+ IR+ KN+RIC DCH+A KL+S +F RKI IRD + +H
Sbjct: 532 VLRYHSEKLAMAFGLLNTPPGTTIRVAKNLRICGDCHNAAKLISFIFGRKIVIRDVQRFH 591

Query: 499 HFEDGSCSCLEYW 511
            FEDG CSC ++W
Sbjct: 592 RFEDGKCSCGDFW 604


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 213/513 (41%), Positives = 330/513 (64%), Gaps = 12/513 (2%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESD-----DLDVVSWNSMINGY-----VRNGEIL 59
           +VF+ N+LI+ Y+  G    A  ++ E       + D  ++  +I        VR GE +
Sbjct: 84  NVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETI 143

Query: 60  EGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGR 119
             + +         V  NS+L      G V  A +VF++MP++ LV+W  +I+GFA+NG+
Sbjct: 144 HSVVIRSGFGSLIYVQ-NSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGK 202

Query: 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
           P+EALAL+ EM S  ++P+   +VSLLSACA++GAL  G  V+ Y+ K  +  +      
Sbjct: 203 PEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNV 262

Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKS-KGISP 238
           L+D+YA+CG ++ A  +F    DK+  ++TS I GLA+NG   EA ELF+ M+S +G+ P
Sbjct: 263 LLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLP 322

Query: 239 DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENF 298
             I+++ +L ACSH G V++GF YF  M + + I+P ++H+ CMVDLL RAG +++A  +
Sbjct: 323 CEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEY 382

Query: 299 IASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKG 358
           I SMPM+P+ VIW TLLGAC VH ++++ +     +++ + NH G Y+LLSN+Y    + 
Sbjct: 383 IKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRW 442

Query: 359 ENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNY 418
            + +++RK M +  +K+ PG SL+E+   VHEFL GD+SH ++  IY   +E+  ++++ 
Sbjct: 443 SDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSE 502

Query: 419 GYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAM 478
           GY  +  +V  D+EEEEKE  + YHSEK+A+AF LI T   S I +VKN+R+C+DCH A+
Sbjct: 503 GYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAI 562

Query: 479 KLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           KLVSKV+ R+I +RDR  +HHF++GSCSC +YW
Sbjct: 563 KLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 116/242 (47%), Gaps = 45/242 (18%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V+++ F   ++V+NSL+  Y+ CG V  A  VFD+  + D+V+WNS+ING+  NG+  E
Sbjct: 146 VVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEE 205

Query: 61  GLKLFDKMPQ---------------------------------------RNDVSWNSILG 81
            L L+ +M                                         RN  S N +L 
Sbjct: 206 ALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLD 265

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD-LEPNSA 140
              R G V++A  +F++M  ++ VSW  LI G A NG  KEA+ LF+ M+S + L P   
Sbjct: 266 LYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEI 325

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKC---IKLDSILCAALIDMYAKCGSIDLAMQVF 197
             V +L AC+  G +  G   +  ++++     +++   C  ++D+ A+ G +  A +  
Sbjct: 326 TFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGC--MVDLLARAGQVKKAYEYI 383

Query: 198 HS 199
            S
Sbjct: 384 KS 385


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/551 (39%), Positives = 328/551 (59%), Gaps = 43/551 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +V++    DV V  +L + Y  CG V+DAR VF+   + DV++WN+MI G V +G++ E 
Sbjct: 272 IVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEA 331

Query: 62  LKLFDKM------PQRNDVSWNSIL------GGL------------------VRF----- 86
             +F +M      P R  V++ +IL      GGL                  VRF     
Sbjct: 332 HGMFHRMLKECVAPDR--VTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALI 389

Query: 87  ------GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
                 GS+ DA +VF++MPKR +VSW  L+ G+A  G+  E+ + F++M    +E N  
Sbjct: 390 NMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKI 449

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
             + +L AC+   AL +G  +++ + K  I  D  +  AL+ MY KCGS++ A++V    
Sbjct: 450 TYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGM 509

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
             +DV  + + I GLA NG  +EA + FE MKS+ + P++ +++ V+SAC     VE+G 
Sbjct: 510 STRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGR 569

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
             F SM   +GI P   HYACMVD+L RAG L EAE+ I +MP KP   +WG LL ACR 
Sbjct: 570 RQFASMRKDYGIVPTEKHYACMVDILARAGHLGEAEDVILTMPFKPSAAMWGALLAACRA 629

Query: 321 HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS 380
           H N E+G++     ++ +  + G Y+ LS IY       +  ++RK M++R +K+ PG S
Sbjct: 630 HGNVEIGEQAAEQCLKLEPQNAGTYVSLSFIYAAAGMWRDVAKLRKLMKERGVKKEPGRS 689

Query: 381 LIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVI 440
            IE+ G VH F+AGD+SH +T+EIY   E + K+IK+ GY  +TR VM D+++E KE  +
Sbjct: 690 WIEVAGEVHSFVAGDQSHPRTEEIYSELEALTKQIKSLGYVPDTRFVMHDLDQEGKERAV 749

Query: 441 GYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF 500
            +HSEKLA+A+GLI T P + IR+ KN+R+C+DCH+A K +SK+  R+I  RD   +HHF
Sbjct: 750 CHHSEKLAIAYGLISTPPETPIRVSKNLRVCTDCHTATKFISKITGREIIARDAHRFHHF 809

Query: 501 EDGSCSCLEYW 511
           ++G CSC +YW
Sbjct: 810 KNGECSCGDYW 820



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 166/346 (47%), Gaps = 41/346 (11%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           +V++ N+L++ Y  CG V +AR +FD+  +  VVSWN MI+GY   G   E   LF  M 
Sbjct: 78  NVYIINTLLKLYVHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQ 137

Query: 70  QR---------------------------------------NDVSWNSILGGLVRFGSVD 90
           Q                                        N    N+++    + GSV 
Sbjct: 138 QEGLEPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVR 197

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           DA RVF+ M  R  VSW  L   +A++G  +E+L  +  M    + P+    +++LSAC 
Sbjct: 198 DARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACG 257

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
            L AL+ G  +++ I +     D  +  AL  MY KCG++  A +VF    ++DV A+ +
Sbjct: 258 SLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNT 317

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I GL  +G   EA  +F  M  + ++PD ++Y+A+LSAC+  G +  G    H+     
Sbjct: 318 MIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACG-KEIHARAVKD 376

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLG 316
           G+  ++     ++++  +AG +++A      MP K D V W  L+G
Sbjct: 377 GLVSDVRFGNALINMYSKAGSMKDARQVFDRMP-KRDVVSWTALVG 421



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 105/357 (29%), Positives = 169/357 (47%), Gaps = 47/357 (13%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V++   A +  V N+LI  Y+ CG VRDAR VFD     D VSW ++   Y  +G   E 
Sbjct: 171 VMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQES 230

Query: 62  LKLFDKM------PQR--------------------------------NDVSWNSILGGL 83
           LK +  M      P R                                +DV  ++ L  +
Sbjct: 231 LKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKM 290

Query: 84  -VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
            ++ G+V DA  VF  +P R +++W  +I G   +G+ +EA  +F  M    + P+    
Sbjct: 291 YIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTY 350

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           +++LSACA+ G L  G  +++   K  +  D     ALI+MY+K GS+  A QVF     
Sbjct: 351 LAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPK 410

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSH---LGWVEKG 259
           +DV ++T+ + G A  G  +E+F  F+ M  +G+  + I+Y+ VL ACS+   L W ++ 
Sbjct: 411 RDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKE- 469

Query: 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLG 316
               H+     GI  +L     ++ +  + G +E+A      M  + D V W TL+G
Sbjct: 470 ---IHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTR-DVVTWNTLIG 522



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 120/266 (45%), Gaps = 36/266 (13%)

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           V LL +C +   L  G  V+ +I +  +K +  +   L+ +Y  CGS++ A ++F  + +
Sbjct: 48  VKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLFDKFSN 107

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS----------- 251
           K V ++   I G A  G   EAF LF  M+ +G+ PD  +++++LSACS           
Sbjct: 108 KSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGREV 167

Query: 252 HLGWVEKGFYYFHS--------------------MFDVHGIKPELDHYACMVDLLGRAGL 291
           H+  +E G     +                    +FD    + E+  +  +      +G 
Sbjct: 168 HVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVS-WTTLTGAYAESGY 226

Query: 292 LEEAENFIASM---PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRY-IL 347
            +E+     +M    ++P  + +  +L AC      E G++I   ++ES+ + D R    
Sbjct: 227 AQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTA 286

Query: 348 LSNIYVETLKGENAEEVRKTMRKRKI 373
           L+ +Y++    ++A EV + +  R +
Sbjct: 287 LTKMYIKCGAVKDAREVFECLPNRDV 312


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/553 (38%), Positives = 337/553 (60%), Gaps = 48/553 (8%)

Query: 7    FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFD 66
            F  D+FV ++LI  YS CG+++DAR +FDE    +VVSW SMI GYV+N +    L LF 
Sbjct: 2046 FETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFK 2105

Query: 67   KMPQR-------NDVSWNSIL---------------------GGLVRFG---------SV 89
               +        N+V  +S++                     G +V+ G         ++
Sbjct: 2106 DFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTL 2165

Query: 90   DDA---C-------RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM-QSLDLEPN 138
             DA   C       +VF+ M ++  +SW  +I+ +AQ+G   EAL +F  M + + +  N
Sbjct: 2166 MDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYN 2225

Query: 139  SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH 198
            +  L ++L ACA  GAL  G  ++  + K  ++ +  +  ++IDMY KCG +++A + F 
Sbjct: 2226 AVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFD 2285

Query: 199  SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEK 258
               +K+V ++T+ + G  M+G + EA ++F  M   G+ P+ I++++VL+ACSH G VE+
Sbjct: 2286 RMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEE 2345

Query: 259  GFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
            G+++F++M   + I+P ++HY CMVDL GRAG L EA N I  M MKPD V+WG+LLGAC
Sbjct: 2346 GWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGAC 2405

Query: 319  RVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPG 378
            R+H+N ++G+     L E D ++ G Y+LLSN+Y +  +  + E +R  M+ R++ + PG
Sbjct: 2406 RIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPG 2465

Query: 379  CSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKET 438
             SL+EL G VH FL GD+ H   + IY++ E++  +++  GY     SV+ D++EEEKE 
Sbjct: 2466 FSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGYVPNMTSVLHDVDEEEKEI 2525

Query: 439  VIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYH 498
            ++  HSEKLA+AFG++ + PG+ I I+KN+R+C DCH+ +KL+SK+  R   +RD K +H
Sbjct: 2526 ILRVHSEKLAVAFGVMNSAPGTTINIIKNLRVCGDCHTVIKLISKLVHRDFVVRDSKRFH 2585

Query: 499  HFEDGSCSCLEYW 511
            HF+DG CSC +YW
Sbjct: 2586 HFKDGVCSCGDYW 2598



 Score =  218 bits (556), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 111/294 (37%), Positives = 170/294 (57%), Gaps = 31/294 (10%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K  F+ DVFV+N+LI FY  CG  R A                               
Sbjct: 151 LIKYGFSGDVFVQNNLIDFYFKCGHTRFA------------------------------- 179

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
           LK+F+KM  RN VSW +++ GL+  G + +A R+F+++P +++VSW  +I+G+ +N +P+
Sbjct: 180 LKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPE 239

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
           EAL LF+ MQ+ ++ PN   +VSL+ AC ++G L  G  ++ Y  K CI++   L  ALI
Sbjct: 240 EALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALI 299

Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
           DMY+KCGSI  A++VF +   K +  + S I  L ++G   EA  LF  M+   + PD+I
Sbjct: 300 DMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAI 359

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA 295
           ++I VL AC H+  V++G  YF  M   +GI P  +HY CM +L  R+  L+EA
Sbjct: 360 TFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEA 413



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 124/305 (40%), Gaps = 64/305 (20%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           G +  A  +F Q+      +W ++I     NG  ++AL L++ M    +  +      ++
Sbjct: 73  GRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVI 132

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH-------- 198
            AC    ++D G  V+  + K     D  +   LID Y KCG    A++VF         
Sbjct: 133 KACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVV 192

Query: 199 ----------SYGD-------------KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG 235
                     S GD             K+V ++T+ I G   N    EA ELF+ M+++ 
Sbjct: 193 SWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAEN 252

Query: 236 ISPDSISYIAVLSACSHLG---------------WVEKGFYYFHSMFDVHG--------- 271
           I P+  + ++++ AC+ +G                +E G Y   ++ D++          
Sbjct: 253 IFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAI 312

Query: 272 ------IKPELDHYACMVDLLGRAGLLEEAENFIASMP---MKPDNVIWGTLLGACRVHR 322
                  +  L  +  M+  LG  GL +EA N  + M    +KPD + +  +L AC   +
Sbjct: 313 EVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIK 372

Query: 323 NAEMG 327
           N + G
Sbjct: 373 NVKEG 377



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 90/190 (47%), Gaps = 10/190 (5%)

Query: 74   VSWNSILGGLV--RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQ 131
            +++NSIL G+   R    + A   +  + K ++ SW  +I+  A+ G   EAL  F  ++
Sbjct: 1948 ITYNSILFGVPSGREDHSNLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLR 2007

Query: 132  SLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSID 191
             L L P  +     + +C+ L  L  G   +        + D  + +ALIDMY+KCG + 
Sbjct: 2008 KLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLK 2067

Query: 192  LAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM--------KSKGISPDSISY 243
             A  +F     ++V ++TS I G   N  +  A  LF++             +  DS+  
Sbjct: 2068 DARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVM 2127

Query: 244  IAVLSACSHL 253
            ++VLSACS +
Sbjct: 2128 VSVLSACSRV 2137



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 91/199 (45%), Gaps = 19/199 (9%)

Query: 2    VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
            V+K    Y+V V  S+I  Y  CGRV  A+  FD   + +V SW +M+ GY  +G   E 
Sbjct: 2252 VIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEA 2311

Query: 62   LKLFDKM----PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLIS 112
            L +F KM     + N +++ S+L      G V++    FN M  +      +  +  ++ 
Sbjct: 2312 LDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVD 2371

Query: 113  GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKL 172
             F + G   EA  L + M+   ++P+  +  SLL AC     +D G        +K  +L
Sbjct: 2372 LFGRAGCLNEAYNLIKRMK---MKPDFVVWGSLLGACRIHKNVDLGEIA----AQKLFEL 2424

Query: 173  DSILCA---ALIDMYAKCG 188
            D   C     L ++YA  G
Sbjct: 2425 DPDNCGYYVLLSNLYADAG 2443



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 9/145 (6%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +KN     V++  +LI  YS CG ++DA  VF+      + +WNSMI     +G   E L
Sbjct: 284 IKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEAL 343

Query: 63  KLFDKMPQRN----DVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWV-----VLISG 113
            LF +M + N     +++  +L   V   +V + C  F +M +   ++ +      +   
Sbjct: 344 NLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTEL 403

Query: 114 FAQNGRPKEALALFREMQSLDLEPN 138
           +A++    EA    +E+ SL   P+
Sbjct: 404 YARSNNLDEAFKSTKEVGSLANSPS 428



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 75/157 (47%), Gaps = 4/157 (2%)

Query: 197  FHSYGDK-DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGW 255
            F+ Y DK +V ++ S I  LA  G S+EA   F +++  G+ P   S+   + +CS L  
Sbjct: 1971 FYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCD 2030

Query: 256  VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
            +  G       F V G + +L   + ++D+  + G L++A      +P++ + V W +++
Sbjct: 2031 LVSGRMSHQQAF-VFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLR-NVVSWTSMI 2088

Query: 316  GACRVHRNAEMGQRI-GNMLIESDQNHDGRYILLSNI 351
                 +  A+    +  + L E  +  DG  + L ++
Sbjct: 2089 TGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSV 2125



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 49/229 (21%), Positives = 97/229 (42%), Gaps = 8/229 (3%)

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           LL  C     L     +++ I +  +  D +L   LI +Y+  G I  A+ +F+   +  
Sbjct: 33  LLQNCKNFKHL---RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPC 89

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
              +   I    +NG S +A  L++NM  +GI+ D  ++  V+ AC++   ++ G    H
Sbjct: 90  TFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLG-KVVH 148

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
                +G   ++     ++D   + G    A      M ++ + V W T++       + 
Sbjct: 149 GSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVR-NVVSWTTVISGLISCGDL 207

Query: 325 EMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKI 373
           +  +RI +   E    +   +  + N Y+   + E A E+ K M+   I
Sbjct: 208 QEARRIFD---EIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENI 253


>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/472 (42%), Positives = 307/472 (65%), Gaps = 1/472 (0%)

Query: 40  LDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQM 99
           LD +S N++I+ Y++ G+     K+FD M  +  V+WNS++ GLVR G ++ A R+F +M
Sbjct: 358 LDNIS-NAIIDMYMKCGKREAACKVFDSMSNKTVVTWNSLIAGLVRDGELELALRIFGEM 416

Query: 100 PKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGN 159
           P+ +LVSW  +I    Q    +EA+ L REMQ+  ++ +   +V + SAC  LGALD   
Sbjct: 417 PESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIASACGYLGALDLAK 476

Query: 160 WVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNG 219
           W+Y+YI+K  I +D  L  AL+DM+++CG    AM+VF +   +DVSA+T+AI   A+ G
Sbjct: 477 WIYTYIEKNDIHIDMQLGTALVDMFSRCGDPLNAMRVFENMEKRDVSAWTAAIRVKAVEG 536

Query: 220 HSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHY 279
           ++  A ELF+ M  + +  D   ++A+L+A SH G+V++G   F +M  +HG+ P++ HY
Sbjct: 537 NAKGAIELFDEMLKQDVKADDFVFVALLTAFSHGGYVDQGRQLFWAMEKIHGVSPQIVHY 596

Query: 280 ACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQ 339
            CMVDLLGRAGLLEEA + + SMP+KP++VIWG+ L ACR H+N E        + +   
Sbjct: 597 GCMVDLLGRAGLLEEAFDLMKSMPIKPNDVIWGSFLAACRKHKNVEFANYADEKITQLAP 656

Query: 340 NHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHE 399
              G ++LLSNIY    K  +   VR  M+++  ++  G S IE+ G++ EF +GD SH 
Sbjct: 657 EKVGIHVLLSNIYASAGKWNDVARVRLQMKEKGFQKVAGSSSIEVHGLIREFTSGDESHT 716

Query: 400 KTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPG 459
           +  +I    +EI  +I   GY  +T +V+ D++E+EKE ++  HSEKLA+A+GLI T  G
Sbjct: 717 ENAQIGLMLQEINCRISQVGYVPDTTNVLVDVDEQEKEHLLSRHSEKLAMAYGLINTGKG 776

Query: 460 SVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
             IR+VKN+R+CSDCHS  KLVSK++ R+I++RD   YH F++G CSC ++W
Sbjct: 777 IPIRVVKNLRMCSDCHSFAKLVSKLYGREITVRDNNRYHFFKEGFCSCRDFW 828



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 111/415 (26%), Positives = 182/415 (43%), Gaps = 78/415 (18%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +VVK     D+FV NSLI FY+ CG+V   R VFDE  + +VVSW S+INGY       E
Sbjct: 147 VVVKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVNMAKE 206

Query: 61  GLKLFDKMPQ---------------------------------------RNDVSWNSILG 81
            + LF +M +                                        N +  N++L 
Sbjct: 207 AVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVKSNTLVVNALLD 266

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
             ++ G +     +F++   ++LV +  ++S + Q+G   E L +  EM      P+   
Sbjct: 267 MYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVT 326

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCI-KLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
           ++S ++ACAQLG L  G   ++Y+ +  + +LD+I   A+IDMY KCG  + A +VF S 
Sbjct: 327 MLSTIAACAQLGDLSVGKSSHAYVFRNGLERLDNI-SNAIIDMYMKCGKREAACKVFDSM 385

Query: 201 GDKDVSAYTSAIFGLAMNGH-----------------------------SI--EAFELFE 229
            +K V  + S I GL  +G                              S+  EA +L  
Sbjct: 386 SNKTVVTWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLR 445

Query: 230 NMKSKGISPDSISYIAVLSACSHLGWVE--KGFYYFHSMFDVHGIKPELDHYACMVDLLG 287
            M+++GI  D ++ + + SAC +LG ++  K  Y +    D+H    ++     +VD+  
Sbjct: 446 EMQNQGIKGDRVTMVGIASACGYLGALDLAKWIYTYIEKNDIH---IDMQLGTALVDMFS 502

Query: 288 RAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD 342
           R G    A     +M  K D   W   +    V  NA+    + + +++ D   D
Sbjct: 503 RCGDPLNAMRVFENME-KRDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQDVKAD 556



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 122/239 (51%), Gaps = 7/239 (2%)

Query: 58  ILEGLKLFDKMPQRNDVSWNSILGGLVRFG---SVDDACRVF--NQMPKRSLVSWVVLIS 112
           ++E  +L   M ++   + N ++   V+ G   S++ A   F  ++  K SL +   LI 
Sbjct: 35  LIELKQLHCNMLKKGVFNINKLIAACVQMGTHESLNYALNAFKEDEGTKCSLYTCNTLIR 94

Query: 113 GFAQNGRPKEALALFREMQ-SLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK 171
           G+A +G  KEA+ ++  M   + + P++     LLSAC+++ A   G  V+  + K  + 
Sbjct: 95  GYAASGLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAFSEGVQVHGVVVKMGLV 154

Query: 172 LDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM 231
            D  +  +LI  YA CG +DL  +VF    +++V ++TS I G ++   + EA  LF  M
Sbjct: 155 KDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVNMAKEAVCLFFEM 214

Query: 232 KSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAG 290
              G+ P+ ++ +  +SAC+ L  +E G    + M ++ G+K        ++D+  + G
Sbjct: 215 VEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTEL-GVKSNTLVVNALLDMYMKCG 272



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 12/166 (7%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           KN    D+ +  +L+  +S CG   +A  VF+  +  DV +W + I      G     ++
Sbjct: 484 KNDIHIDMQLGTALVDMFSRCGDPLNAMRVFENMEKRDVSAWTAAIRVKAVEGNAKGAIE 543

Query: 64  LFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPK-----RSLVSWVVLISGF 114
           LFD+M ++    +D  + ++L      G VD   ++F  M K       +V +  ++   
Sbjct: 544 LFDEMLKQDVKADDFVFVALLTAFSHGGYVDQGRQLFWAMEKIHGVSPQIVHYGCMVDLL 603

Query: 115 AQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNW 160
            + G  +EA  L   M+S+ ++PN  I  S L+AC +   +++ N+
Sbjct: 604 GRAGLLEEAFDL---MKSMPIKPNDVIWGSFLAACRKHKNVEFANY 646


>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/520 (38%), Positives = 324/520 (62%), Gaps = 11/520 (2%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VV+  F  D+FV+ +L+  Y+ CG + DA  VFD     DVV W +MI  Y +    L+ 
Sbjct: 158 VVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKA 217

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFG----SVDDACRVFNQMPKRSLVSWVVLISG 113
           L LF KM +     ++++  S+   + + G    ++  A  VF++M +R+ +SW  ++SG
Sbjct: 218 LMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISRARLVFDRMEERNGISWNSMLSG 277

Query: 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD 173
           + QNGRP +AL+LF +MQ+ + +PN    + ++SAC+ LG+   G  +++++    + +D
Sbjct: 278 YTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDID 337

Query: 174 SILCAALIDMYAKCGSIDLAMQVFHS--YGDKDVSAYTSAIFGLAMNGHSIEAFELFENM 231
           + L  A++DMY KCG +D A+++F++   G++DVS++   I G  ++GH  EA ELF  M
Sbjct: 338 TTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRM 397

Query: 232 KSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGL 291
           + +G+ P+ I++ ++LSACSH G +++G   F  M  +  ++PE+ HYACMVD+LGRAG 
Sbjct: 398 QVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMTKL-SVRPEMKHYACMVDMLGRAGF 456

Query: 292 LEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNI 351
           L EA   I  +P +P + +WG LL ACR+H N E+G+   N L + +  H G Y+L+SNI
Sbjct: 457 LNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNI 516

Query: 352 YVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEI 411
           Y  + K +  E VR+ M+ R +K+    S+IE    VH F   D+S    +E+Y+  E +
Sbjct: 517 YAASNKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEVHGFHTADQSSPYYREVYRKVESL 576

Query: 412 VKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRIC 471
             ++K  GY  +   V+ D+E E+KE ++ YHSEKLA+AFG++    G  I++ KN+R+C
Sbjct: 577 AIEMKMVGYVPDLSCVLHDVEPEDKEHLLNYHSEKLAVAFGIMKMDQGMPIQVTKNLRVC 636

Query: 472 SDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           SDCH A K +S ++ RKI +RD   +HHF+ G CSC +YW
Sbjct: 637 SDCHWAFKFISSIYGRKIIVRDGNRFHHFQGGRCSCGDYW 676



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 116/254 (45%), Gaps = 16/254 (6%)

Query: 97  NQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA-QLGAL 155
            Q P   L +   ++  +A  GR  EA+ L+  MQ + +  N+     +L  CA +LGA+
Sbjct: 92  TQAPNSFLCN--TMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAV 149

Query: 156 DYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGL 215
            +G  V+  + +     D  + AAL+DMYAKCG I  A +VF     +DV  +T+ I   
Sbjct: 150 -FGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLY 208

Query: 216 AMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG----WVEKGFYYFHSMFDVHG 271
                 ++A  LF  M+ +G   D I+ I+V SA   LG     + +    F  M + +G
Sbjct: 209 EQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISRARLVFDRMEERNG 268

Query: 272 IKPELDHYACMVDLLGRAGLLEEAENFIASMPMK---PDNVIWGTLLGACRVHRNAEMGQ 328
           I      +  M+    + G   +A +    M      P+ V    ++ AC    +  +G+
Sbjct: 269 IS-----WNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGR 323

Query: 329 RIGNMLIESDQNHD 342
           ++ N +I S  + D
Sbjct: 324 KLHNFVISSKMDID 337


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 222/551 (40%), Positives = 325/551 (58%), Gaps = 41/551 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K+    DVFV N+LI  YS  GR++DA+ VFD  +  D+VSWNS+I  Y +N + +  
Sbjct: 274 VIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTA 333

Query: 62  LKLFDKM---PQRND----VSWNSILGGL------------------------------- 83
           L  F +M     R D    VS  SI G L                               
Sbjct: 334 LGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVN 393

Query: 84  --VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQ-SLDLEPNSA 140
              + GS+D A  VF Q+P R ++SW  LI+G+AQNG   EA+  +  M+    + PN  
Sbjct: 394 MYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQG 453

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
             VS+L A + +GAL  G  ++  + K C+ LD  +   LIDMY KCG ++ AM +F+  
Sbjct: 454 TWVSILPAYSHVGALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEI 513

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
             +    + + I  L ++GH  +A +LF++M++ G+  D I+++++LSACSH G V++  
Sbjct: 514 PQETSVPWNAIISSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLSACSHSGLVDEAQ 573

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
           + F +M   + IKP L HY CMVDL GRAG LE+A N +++MP++ D  IWGTLL ACR+
Sbjct: 574 WCFDTMQKEYRIKPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADASIWGTLLAACRI 633

Query: 321 HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS 380
           H NAE+G    + L+E D  + G Y+LLSNIY    K E A +VR   R R +++ PG S
Sbjct: 634 HGNAELGTFASDRLLEVDSENVGYYVLLSNIYANVGKWEGAVKVRSLARDRGLRKTPGWS 693

Query: 381 LIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVI 440
            + +  VV  F AG++SH +  EIY+    +  K+K+ GY  +   V+ D+EE+EKE ++
Sbjct: 694 SVVVGSVVEVFYAGNQSHPQCAEIYEELRVLNAKMKSLGYVPDYSFVLQDVEEDEKEEIL 753

Query: 441 GYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF 500
             HSE+LA+ FG+I T P S IRI KN+R+C DCH+A K +SK+ +R+I +RD   +HHF
Sbjct: 754 TSHSERLAIVFGIISTPPKSPIRIFKNLRVCGDCHNATKYISKITEREIIVRDSNRFHHF 813

Query: 501 EDGSCSCLEYW 511
           +DG CSC +YW
Sbjct: 814 KDGICSCGDYW 824



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 111/365 (30%), Positives = 186/365 (50%), Gaps = 43/365 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K  F +DV+V  SLI  YS  G V  A  VF +    DV SWN+MI+G+ +NG + E 
Sbjct: 173 VLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEA 232

Query: 62  LKLFDKM-------------------PQRNDVSW--------------------NSILGG 82
           L++ D+M                    Q NDV                      N+++  
Sbjct: 233 LRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINM 292

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             +FG + DA RVF+ M  R LVSW  +I+ + QN  P  AL  F+EM  + + P+   +
Sbjct: 293 YSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTV 352

Query: 143 VSLLSACAQLGALDYGNWVYSYIQK-KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           VSL S   QL     G  V+ ++ + + +++D ++  AL++MYAK GSID A  VF    
Sbjct: 353 VSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLP 412

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENM-KSKGISPDSISYIAVLSACSHLGWVEKGF 260
            +DV ++ + I G A NG + EA + +  M + + I P+  +++++L A SH+G +++G 
Sbjct: 413 SRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGALQQGM 472

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
              H     + +  ++    C++D+ G+ G LE+A +    +P +  +V W  ++ +  +
Sbjct: 473 -KIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQE-TSVPWNAIISSLGI 530

Query: 321 HRNAE 325
           H + E
Sbjct: 531 HGHGE 535



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 154/345 (44%), Gaps = 38/345 (11%)

Query: 8   AYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEI--------- 58
           A DV +   L+  Y+  G +  +   F      ++ SWNSM++ YVR G           
Sbjct: 80  AQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSAYVRRGRYRDSMDCVTE 139

Query: 59  ---LEG---------------LKLFD---------KMPQRNDVSWNSILGGLV-RFGSVD 90
              L G               L L D         KM   +DV   + L  L  RFG+V+
Sbjct: 140 LLSLSGVRPDFYTFPPVLKACLSLADGEKMHCWVLKMGFEHDVYVAASLIHLYSRFGAVE 199

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
            A +VF  MP R + SW  +ISGF QNG   EAL +   M++ +++ ++  + S+L  CA
Sbjct: 200 VAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICA 259

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
           Q   +  G  V+ Y+ K  ++ D  +  ALI+MY+K G +  A +VF     +D+ ++ S
Sbjct: 260 QSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNS 319

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I     N   + A   F+ M   G+ PD ++ +++ S    L     G      +    
Sbjct: 320 IIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCR 379

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
            ++ ++     +V++  + G ++ A      +P + D + W TL+
Sbjct: 380 WLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSR-DVISWNTLI 423



 Score = 46.2 bits (108), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 71/166 (42%), Gaps = 7/166 (4%)

Query: 173 DSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMK 232
           D +L   L+ +YA  G + L+   F     K++ ++ S +      G   ++ +    + 
Sbjct: 82  DVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSAYVRRGRYRDSMDCVTELL 141

Query: 233 S-KGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGL 291
           S  G+ PD  ++  VL AC  L   EK   +   M    G + ++   A ++ L  R G 
Sbjct: 142 SLSGVRPDFYTFPPVLKACLSLADGEKMHCWVLKM----GFEHDVYVAASLIHLYSRFGA 197

Query: 292 LEEAENFIASMPMKPDNVIWGTLL-GACRVHRNAEMGQRIGNMLIE 336
           +E A      MP++ D   W  ++ G C+    AE  + +  M  E
Sbjct: 198 VEVAHKVFVDMPVR-DVGSWNAMISGFCQNGNVAEALRVLDRMKTE 242


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/552 (38%), Positives = 326/552 (59%), Gaps = 46/552 (8%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
            V + +A D  V+N+LI  YS CG +  AR VFD   + DV++WN+MI+GY + G   + 
Sbjct: 189 TVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQA 248

Query: 62  LKLFDKM----PQRNDVSWNSILGGLVRF------------------------------- 86
           L+LF +M    P+ N V++  +L                                     
Sbjct: 249 LELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNM 308

Query: 87  -----GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
                 S+++A +VF ++  R +++W +LI  + Q G+ K+AL +F++MQ  ++ PN   
Sbjct: 309 YTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEIT 368

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           L ++LSACA LGA   G  V++ I     K D +L  +L++MY +CGS+D  + VF +  
Sbjct: 369 LSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIR 428

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
           DK + ++++ I   A +GHS    E F  +  +G++ D ++ ++ LSACSH G +++G  
Sbjct: 429 DKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQ 488

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            F SM   HG+ P+  H+ CMVDLL RAG LE AEN I  MP  PD V W +LL  C++H
Sbjct: 489 SFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLH 548

Query: 322 RNAEMGQRIGNML--IESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGC 379
            + +   R+ + L  +ES+  H     LLSN+Y E  +    ++VRKT  +R  ++ PGC
Sbjct: 549 NDTKRAARVADKLFELESEDEH-STVTLLSNVYAEAGRW---DDVRKTRNRRAARKNPGC 604

Query: 380 SLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETV 439
           S IE++  VHEF+AGD+SH + + I    + + K++K+ GY  + R V+ +++EEEKE +
Sbjct: 605 SYIEINDTVHEFVAGDKSHPEEELIAAEIKRLSKQMKDAGYVPDMRMVLHNVKEEEKEQM 664

Query: 440 IGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHH 499
           + YHSEKLA+A+GLI T PG+ + IVKN+R C DCH+A K +S++  RKI +RD   +HH
Sbjct: 665 LCYHSEKLAIAYGLISTPPGTPLHIVKNLRACVDCHAAAKFISRIVGRKIVVRDSTRFHH 724

Query: 500 FEDGSCSCLEYW 511
           FE+GSCSC +YW
Sbjct: 725 FENGSCSCKDYW 736



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 94/362 (25%), Positives = 174/362 (48%), Gaps = 45/362 (12%)

Query: 9   YDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM 68
           +D+ +  +LI  Y+ C  +  AR  FDE     +V+WN++I GY RNG+    LK++  M
Sbjct: 92  FDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDM 151

Query: 69  PQRN----------------------DVS--------------------WNSILGGLVRF 86
             ++                      D+S                     N+++    + 
Sbjct: 152 VSKSPEGMKPDAITFSSALYACSVVGDISQGREIEARTVASGYASDSIVQNALINMYSKC 211

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           GS++ A +VF+++  R +++W  +ISG+A+ G   +AL LF+ M   D +PN    + LL
Sbjct: 212 GSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLL 271

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC-GSIDLAMQVFHSYGDKDV 205
           +AC  L  L+ G  ++  +++   + D ++   L++MY KC  S++ A QVF     +DV
Sbjct: 272 TACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKCSSSLEEARQVFERLRTRDV 331

Query: 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHS 265
             +   I      G + +A ++F+ M+ + ++P+ I+   VLSAC+ LG   +G    H+
Sbjct: 332 ITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQG-KAVHA 390

Query: 266 MFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAE 325
           +      K ++     ++++  R G L++     A++  K   V W TL+ A   H ++ 
Sbjct: 391 LIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDK-SLVSWSTLIAAYAQHGHSR 449

Query: 326 MG 327
            G
Sbjct: 450 TG 451



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 161/342 (47%), Gaps = 46/342 (13%)

Query: 20  FYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM----------- 68
            Y  CG V DA  VF   +  + VSW  ++  + RNG   E L  + +M           
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 69  --------PQRNDVSWNSILGGLV---------------------RFGSVDDACRVFNQM 99
                       D+    +L  ++                     R   ++ A + F++M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 100 PKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE---PNSAILVSLLSACAQLGALD 156
            K++LV+W  LI+G+++NG  + AL ++++M S   E   P++    S L AC+ +G + 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDIS 180

Query: 157 YGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLA 216
            G  + +         DSI+  ALI+MY+KCGS++ A +VF    ++DV A+ + I G A
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYA 240

Query: 217 MNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPEL 276
             G + +A ELF+ M      P+ +++I +L+AC++L  +E+G    H     HG + +L
Sbjct: 241 KQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQG-RAIHRKVKEHGYESDL 299

Query: 277 DHYACMVDLLGR-AGLLEEAENFIASMPMKPDNVIWGTLLGA 317
                ++++  + +  LEEA      +  + D + W  L+ A
Sbjct: 300 VIGNVLLNMYTKCSSSLEEARQVFERLRTR-DVITWNILIVA 340



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 129/253 (50%), Gaps = 10/253 (3%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           GSV DA  VF+ +   + VSW ++++ FA+NG  +EAL  +R M    L P+ A+ V  +
Sbjct: 6   GSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVVAI 65

Query: 147 SACAQLGALDYGNWVYSYI-QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
             C+    L  G  +++ I + + ++ D IL  ALI MYA+C  ++LA + F   G K +
Sbjct: 66  GVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTL 125

Query: 206 SAYTSAIFGLAMNGHSIEAFELFENMKSK---GISPDSISYIAVLSACSHLGWVEKGFYY 262
             + + I G + NG    A +++++M SK   G+ PD+I++ + L ACS +G + +G   
Sbjct: 126 VTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQG-RE 184

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
             +     G   +      ++++  + G LE A      +  + D + W T++       
Sbjct: 185 IEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNR-DVIAWNTMISGYAKQG 243

Query: 323 NA----EMGQRIG 331
            A    E+ QR+G
Sbjct: 244 AATQALELFQRMG 256


>gi|15220333|ref|NP_171976.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75192500|sp|Q9MAT2.1|PPR10_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g04840
 gi|7211995|gb|AAF40466.1|AC004809_24 F13M7.17 [Arabidopsis thaliana]
 gi|332189629|gb|AEE27750.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 213/514 (41%), Positives = 310/514 (60%), Gaps = 4/514 (0%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDL----DVVSWNSMINGYVRNGE 57
            +KN    D FV+ SL+  Y+  G+++ A  VF+ES D      ++ WN +INGY R  +
Sbjct: 152 TLKNFVDCDSFVRLSLVDMYAKTGQLKHAFQVFEESPDRIKKESILIWNVLINGYCRAKD 211

Query: 58  ILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQN 117
           +     LF  MP+RN  SW++++ G V  G ++ A ++F  MP++++VSW  LI+GF+Q 
Sbjct: 212 MHMATTLFRSMPERNSGSWSTLIKGYVDSGELNRAKQLFELMPEKNVVSWTTLINGFSQT 271

Query: 118 GRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILC 177
           G  + A++ + EM    L+PN   + ++LSAC++ GAL  G  ++ YI    IKLD  + 
Sbjct: 272 GDYETAISTYFEMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIG 331

Query: 178 AALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGIS 237
            AL+DMYAKCG +D A  VF +   KD+ ++T+ I G A++G   +A + F  M   G  
Sbjct: 332 TALVDMYAKCGELDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEK 391

Query: 238 PDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAEN 297
           PD + ++AVL+AC +   V+ G  +F SM   + I+P L HY  +VDLLGRAG L EA  
Sbjct: 392 PDEVVFLAVLTACLNSSEVDLGLNFFDSMRLDYAIEPTLKHYVLVVDLLGRAGKLNEAHE 451

Query: 298 FIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLK 357
            + +MP+ PD   W  L  AC+ H+     + +   L+E D    G YI L   +     
Sbjct: 452 LVENMPINPDLTTWAALYRACKAHKGYRRAESVSQNLLELDPELCGSYIFLDKTHASKGN 511

Query: 358 GENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKN 417
            ++ E+ R +++KR  +R+ G S IELDG +++F AGD SH+ TQEI    +EI+     
Sbjct: 512 IQDVEKRRLSLQKRIKERSLGWSYIELDGQLNKFSAGDYSHKLTQEIGLKLDEIISLAIQ 571

Query: 418 YGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSA 477
            GYN      + DIEEEEKE V G HSEKLAL  G + T PG+ IRI+KN+RIC DCHS 
Sbjct: 572 KGYNPGADWSIHDIEEEEKENVTGIHSEKLALTLGFLRTAPGTTIRIIKNLRICGDCHSL 631

Query: 478 MKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           MK VSK+ +R I +RD + +HHF+DG CSC +YW
Sbjct: 632 MKYVSKISQRDILLRDARQFHHFKDGRCSCGDYW 665



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/300 (22%), Positives = 115/300 (38%), Gaps = 68/300 (22%)

Query: 88  SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLS 147
           S D +  +F    +R+      LI G  +N R + ++  F  M  L ++P+      +L 
Sbjct: 75  SPDYSLSIFRNSEERNPFVLNALIRGLTENARFESSVRHFILMLRLGVKPDRLTFPFVLK 134

Query: 148 ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV----------- 196
           + ++LG    G  +++   K  +  DS +  +L+DMYAK G +  A QV           
Sbjct: 135 SNSKLGFRWLGRALHAATLKNFVDCDSFVRLSLVDMYAKTGQLKHAFQVFEESPDRIKKE 194

Query: 197 ------------------------FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMK 232
                                   F S  +++  ++++ I G   +G    A +LFE M 
Sbjct: 195 SILIWNVLINGYCRAKDMHMATTLFRSMPERNSGSWSTLIKGYVDSGELNRAKQLFELMP 254

Query: 233 -------------------------------SKGISPDSISYIAVLSACSHLGWVEKGFY 261
                                           KG+ P+  +  AVLSACS  G +  G  
Sbjct: 255 EKNVVSWTTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLSACSKSGALGSGIR 314

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
               + D +GIK +      +VD+  + G L+ A    ++M  K D + W  ++    VH
Sbjct: 315 IHGYILD-NGIKLDRAIGTALVDMYAKCGELDCAATVFSNMNHK-DILSWTAMIQGWAVH 372



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 56/263 (21%), Positives = 112/263 (42%), Gaps = 21/263 (7%)

Query: 119 RPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCA 178
           +PK + A           P+ +  +SL+ AC    +L +   V++ I ++ + L S + A
Sbjct: 9   KPKSSPAKIYFPADRQASPDESHFISLIHACKDTASLRH---VHAQILRRGV-LSSRVAA 64

Query: 179 ALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISP 238
            L+   +   S D ++ +F +  +++     + I GL  N     +   F  M   G+ P
Sbjct: 65  QLVSCSSLLKSPDYSLSIFRNSEERNPFVLNALIRGLTENARFESSVRHFILMLRLGVKP 124

Query: 239 DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA----CMVDLLGRAGLLEE 294
           D +++  VL + S L     GF +         +K  +D  +     +VD+  + G L+ 
Sbjct: 125 DRLTFPFVLKSNSKL-----GFRWLGRALHAATLKNFVDCDSFVRLSLVDMYAKTGQLKH 179

Query: 295 AENFIASMP---MKPDNVIWGTLL-GACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSN 350
           A       P    K   +IW  L+ G CR  ++  M   +   + E +    G +  L  
Sbjct: 180 AFQVFEESPDRIKKESILIWNVLINGYCRA-KDMHMATTLFRSMPERNS---GSWSTLIK 235

Query: 351 IYVETLKGENAEEVRKTMRKRKI 373
            YV++ +   A+++ + M ++ +
Sbjct: 236 GYVDSGELNRAKQLFELMPEKNV 258


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/551 (39%), Positives = 326/551 (59%), Gaps = 42/551 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K+   +++FV N+LI  Y+  G + DA+ VF +    DVVSWNS+I  Y +N + +  
Sbjct: 299 VIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTA 358

Query: 62  LKLFDKM-------------------PQRND---------------------VSWNSILG 81
              F KM                    Q  D                     V  N+++ 
Sbjct: 359 RGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMD 418

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL-DLEPNSA 140
              + G +D A +VFN +P + +VSW  LISG+ QNG   EA+ ++R M+   +++ N  
Sbjct: 419 MYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQG 478

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
             VS+L+A A +GAL  G  ++ ++ K  + LD  +   LID+Y KCG +  AM +F+  
Sbjct: 479 TWVSILAAYAHVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQV 538

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
             +    + + I    ++GH  +A +LF  M+ +G+ PD +++I++LSACSH G V++G 
Sbjct: 539 PRESSVPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEGK 598

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
           ++FH M + +GIKP L HY CMVDLLGRAG LE A +FI  MP+ PD  IWG LLGACR+
Sbjct: 599 WFFHLMQE-YGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALLGACRI 657

Query: 321 HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS 380
           H N E+G+   + L E D  + G Y+LLSNIY    K E  ++VR   R+R +K+ PG S
Sbjct: 658 HGNIELGKFASDRLFEVDSENVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWS 717

Query: 381 LIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVI 440
            IE++  V  F  G++SH K +EIY     +  K+K+ GY  +   V+ D+EE+EKE ++
Sbjct: 718 SIEVNRRVDIFYTGNQSHPKCKEIYAELRILTAKMKSLGYIPDYSFVLQDVEEDEKEHIL 777

Query: 441 GYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF 500
             HSE+LA+AFG+I T P S IRI KN+R+C DCH+A K +S++ +R+I +RD K +HHF
Sbjct: 778 TSHSERLAIAFGIISTPPKSAIRIFKNLRVCGDCHNATKFISRITEREIVVRDSKRFHHF 837

Query: 501 EDGSCSCLEYW 511
           ++G CSC +YW
Sbjct: 838 KNGICSCGDYW 848



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 116/378 (30%), Positives = 190/378 (50%), Gaps = 59/378 (15%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V K  F +DVFV  SLI  YS  G V  AR +FD+    D+ SWN+MI+G ++NG   + 
Sbjct: 198 VFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQA 257

Query: 62  LKLFDKM-------------------PQRNDVSW--------------------NSILGG 82
           L + D+M                    Q  D+S                     N+++  
Sbjct: 258 LDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINM 317

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             +FG++ DA +VF QM  R +VSW  +I+ + QN  P  A   F +MQ   LEP+   L
Sbjct: 318 YAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTL 377

Query: 143 VSLLSACAQLGALDYGN--WVYSYIQKKCIKLDSILCA-ALIDMYAKCGSIDLAMQVFHS 199
           VSL S  AQ  + DY N   V+ +I ++   +++++   A++DMYAK G ID A +VF+ 
Sbjct: 378 VSLASIAAQ--SRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNL 435

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKS-KGISPDSISYIAVLSACSHLGWVEK 258
              KDV ++ + I G   NG + EA E++  M+  + I  +  +++++L+A +H+G +++
Sbjct: 436 IPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQ 495

Query: 259 GFYYFHSMFDVHG--IKP--ELDHY--ACMVDLLGRAGLLEEAENFIASMPMKPDNVIWG 312
           G         +HG  IK    LD +   C++DL G+ G L +A      +P +  +V W 
Sbjct: 496 G-------MRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVP-RESSVPWN 547

Query: 313 TLLGACRVHRNAEMGQRI 330
            ++    +H + E   ++
Sbjct: 548 AIISCHGIHGHGEKALKL 565



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 152/342 (44%), Gaps = 40/342 (11%)

Query: 12  FVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM--- 68
           F+   L+  Y+  G V  +R  FD+    DV +WNSMI+ YVRNG   E +  F ++   
Sbjct: 109 FISIRLVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLV 168

Query: 69  ----------PQ-------------------RNDVSWN-----SILGGLVRFGSVDDACR 94
                     P                    +    W+     S++    RFG V  A  
Sbjct: 169 TKFQADFYTFPPVLKACQTLVDGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARS 228

Query: 95  VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA 154
           +F+ MP R + SW  +ISG  QNG   +AL +  EM+   +  +S  + S+L  CAQLG 
Sbjct: 229 LFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGD 288

Query: 155 LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFG 214
           +     ++ Y+ K  ++ +  +  ALI+MYAK G++  A +VF     +DV ++ S I  
Sbjct: 289 ISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAA 348

Query: 215 LAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP 274
              N   + A   F  M+  G+ PD ++ +++ S  +      K     H      G   
Sbjct: 349 YEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQ-SRDYKNSRSVHGFIMRRGWLM 407

Query: 275 ELDHYA-CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
           E       ++D+  + G+++ A      +P+K D V W TL+
Sbjct: 408 EAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVK-DVVSWNTLI 448



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 122/233 (52%), Gaps = 6/233 (2%)

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD-LEPNSAILVS 144
            G V  +   F+Q+ ++ + +W  +IS + +NG  +EA+  F ++  +   + +      
Sbjct: 121 LGDVSLSRGTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPP 180

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           +L AC  L  +D G  ++ ++ K   + D  + A+LI MY++ G + +A  +F     +D
Sbjct: 181 VLKACQTL--VD-GRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRD 237

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           + ++ + I GL  NG++ +A ++ + M+ +GI+ DS++  ++L  C+ LG +       H
Sbjct: 238 MGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTA-TLIH 296

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
                HG++ EL     ++++  + G L +A+     M ++ D V W +++ A
Sbjct: 297 LYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLR-DVVSWNSIIAA 348


>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 586

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 207/528 (39%), Positives = 317/528 (60%), Gaps = 31/528 (5%)

Query: 15  NSLIQFYSVC------GRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE-------G 61
           N + +F + C        +  A  +FD+    ++V +N+M  GY R  + L         
Sbjct: 59  NVITKFINFCTSNPTKASMEHAHQLFDQITQPNIVLFNTMARGYARLNDPLRMITHFRRC 118

Query: 62  LKLFDKMPQRND------------VSWN-----SILGGLVRFGSVDDACRVFNQMPKRSL 104
           L+L  K+    +            VS N     +++      G +D + RVF+++ +  +
Sbjct: 119 LRLVSKVKALAEGKQLHCFAVKLGVSDNMYVVPTLINMYTACGDIDASRRVFDKIDEPCV 178

Query: 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSY 164
           V++  +I   A+N R  EALALFRE+Q + L+P    ++ +LS+CA LG+LD G W++ Y
Sbjct: 179 VAYNAIIMSLARNNRANEALALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLGRWMHEY 238

Query: 165 IQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEA 224
           ++K        +   LIDMYAKCGS+D A+ VF     +D  A+++ I   A +G   +A
Sbjct: 239 VKKYGFDRYVKVNTTLIDMYAKCGSLDDAVNVFRDMPKRDTQAWSAIIVAYATHGDGFQA 298

Query: 225 FELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVD 284
             +   MK + + PD I+++ +L ACSH G VE+GF YFH M + +GI P + HY CMVD
Sbjct: 299 ISMLNEMKKEKVQPDEITFLGILYACSHNGLVEEGFEYFHGMTNEYGIVPSIKHYGCMVD 358

Query: 285 LLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGR 344
           LLGRAG L+EA  FI  +P+KP  ++W TLL AC  H N EMG+R+   + E D +H G 
Sbjct: 359 LLGRAGRLDEAYKFIDELPIKPTPILWRTLLSACSTHGNVEMGKRVIERIFELDDSHGGD 418

Query: 345 YILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEI 404
           Y++ SN+     K ++   +RKTM  +   + PGCS IE++ VVHEF AG+  H  +  +
Sbjct: 419 YVIFSNLCARYGKWDDVNHLRKTMIDKGAVKIPGCSSIEVNNVVHEFFAGEGVHSTSTTL 478

Query: 405 YQFWEEIVKKIKNYGYNVETRSVMF-DIEEEEKETVIGYHSEKLALAFGLICTKPGSVIR 463
           ++  +E+VK++K+ GY  +T  V + D+E+EEKE ++ YHSEKLA+ FGL+ T PG+ IR
Sbjct: 479 HRALDELVKELKSAGYVPDTSLVFYADMEDEEKEIILRYHSEKLAITFGLLNTPPGTTIR 538

Query: 464 IVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           +VKN+R+C DCH+A K +S +F R+I +RD + +HHF+DG CSC +YW
Sbjct: 539 VVKNLRVCGDCHNAAKFISLIFGRQIILRDVQRFHHFKDGKCSCGDYW 586



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 118/272 (43%), Gaps = 53/272 (19%)

Query: 7   FAYDVFVK--NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKL 64
           + +D +VK   +LI  Y+ CG + DA  VF +    D  +W+++I  Y  +G+  + + +
Sbjct: 242 YGFDRYVKVNTTLIDMYAKCGSLDDAVNVFRDMPKRDTQAWSAIIVAYATHGDGFQAISM 301

Query: 65  FDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLISGFA 115
            ++M     Q +++++  IL      G V++    F+ M        S+  +  ++    
Sbjct: 302 LNEMKKEKVQPDEITFLGILYACSHNGLVEEGFEYFHGMTNEYGIVPSIKHYGCMVDLLG 361

Query: 116 QNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD-- 173
           + GR  EA   ++ +  L ++P   +  +LLSAC+  G ++ G  V   I     +LD  
Sbjct: 362 RAGRLDEA---YKFIDELPIKPTPILWRTLLSACSTHGNVEMGKRVIERI----FELDDS 414

Query: 174 --------SILCA-------------ALIDMYA----KCGSIDLAMQVFHSYGDKDVSAY 208
                   S LCA              +ID  A     C SI++   V   +  + V + 
Sbjct: 415 HGGDYVIFSNLCARYGKWDDVNHLRKTMIDKGAVKIPGCSSIEVNNVVHEFFAGEGVHS- 473

Query: 209 TSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           TS     A++       EL + +KS G  PD+
Sbjct: 474 TSTTLHRALD-------ELVKELKSAGYVPDT 498


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 227/536 (42%), Positives = 316/536 (58%), Gaps = 37/536 (6%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVR--NGEILEGLKL-FDK 67
           +FV N+L+  Y     + +A  +FDE  + +VVSW +MI+ Y    N + L+ L L F +
Sbjct: 90  MFVVNTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYSNKLNDKALKCLILMFRE 149

Query: 68  MPQRNDVSWNSILG-------------GLVRFG-------------------SVDDACRV 95
             + N  +++S+L              G+++ G                    +D+A  V
Sbjct: 150 GVRPNMFTYSSVLRACDGLPNLRQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGV 209

Query: 96  FNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGAL 155
           F++MP R LV W  +I GFAQN    EAL LF+ M+      + A L S+L AC  L  L
Sbjct: 210 FDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALL 269

Query: 156 DYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGL 215
           + G  V+ ++ K     D IL  ALIDMY KCGS++ A   F    +KDV ++++ + GL
Sbjct: 270 ELGRQVHVHVLK--FDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGL 327

Query: 216 AMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE 275
           A NG+S +A ELFE+MK  G  P+ I+ + VL ACSH G VEKG+YYF SM  + G+ P 
Sbjct: 328 AQNGYSRQALELFESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPG 387

Query: 276 LDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLI 335
            +HY C++DLLGRAG L+EA   I  M  +PD+V W TLLGACRVHRN ++       +I
Sbjct: 388 REHYGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKII 447

Query: 336 ESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGD 395
           E +    G YILLSNIY  T + E+  EVRKTM  R I++ PGCS IE+D  +H F+ GD
Sbjct: 448 ELEPEDAGTYILLSNIYANTQRWEDVAEVRKTMTNRGIRKTPGCSWIEVDKQIHVFILGD 507

Query: 396 RSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLIC 455
            SH K +EI Q   ++++++   GY  +T  V+ D+E E+KE  + YHSEKLA+ FGL+ 
Sbjct: 508 TSHPKIEEIVQRLNDLIERVMGVGYVPDTNFVLQDLEGEQKEDSLRYHSEKLAIMFGLMN 567

Query: 456 TKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
                 +RI KN+RIC DCH   K+VS++  R I IRD   YHHF+DG CSC +YW
Sbjct: 568 LSREKTVRIRKNLRICGDCHVFAKVVSRMEHRSIVIRDPIRYHHFQDGVCSCGDYW 623



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 142/286 (49%), Gaps = 22/286 (7%)

Query: 41  DVVSWNSMINGYVRNGEILEGLK----LFDKMPQRNDVSWNSILGGLVRFGSVDDACRVF 96
           D ++++ +I      G + EG +    +F K  +      N++L   V+F  +++A  +F
Sbjct: 54  DAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLF 113

Query: 97  NQMPKRSLVSWVVLISGFAQ--NGRPKEALAL-FREMQSLDLEPNSAILVSLLSACAQLG 153
           ++MP+R++VSW  +IS ++   N +  + L L FRE     + PN     S+L AC  L 
Sbjct: 114 DEMPERNVVSWTTMISAYSNKLNDKALKCLILMFRE----GVRPNMFTYSSVLRACDGLP 169

Query: 154 ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIF 213
            L     ++  I K  ++ D  + +ALID+Y+K   +D A+ VF     +D+  + S I 
Sbjct: 170 NL---RQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIG 226

Query: 214 GLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIK 273
           G A N    EA  LF+ MK  G   D  +  +VL AC+ L  +E G         VH +K
Sbjct: 227 GFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELG-----RQVHVHVLK 281

Query: 274 PELDHYA--CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
            + D      ++D+  + G LE+A +  + M ++ D + W T++  
Sbjct: 282 FDQDLILNNALIDMYCKCGSLEDANSAFSRM-VEKDVISWSTMVAG 326



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 2/94 (2%)

Query: 224 AFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMV 283
           A    + M+  G+  D+I+Y  ++  CS  G V++G      +F   G +P++     ++
Sbjct: 39  AMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIF-CKGYEPKMFVVNTLL 97

Query: 284 DLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
           ++  +  LLEEAE+    MP + + V W T++ A
Sbjct: 98  NMYVKFNLLEEAEDLFDEMPER-NVVSWTTMISA 130


>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 580

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 205/551 (37%), Positives = 330/551 (59%), Gaps = 41/551 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVC--GRVRDARWVFDESDDLDVVSWNSMINGYVRNGEIL 59
           +V+ +   D F+ + LI+  +V   G V  A  +F  +   ++  WN++I GY  +   +
Sbjct: 30  MVRANLTQDTFLTSKLIESSAVTLSGHVAYAHRIFSCTHHPNLFMWNTIIRGYSISDSPI 89

Query: 60  EGLKLFDKM------PQRNDVSW-----------------------------NSILGGLV 84
             + L+  M      P      +                               ++ GL+
Sbjct: 90  TAIALYRDMFLCGISPNSYTFGFVLKACCKLLRLCEGQELHSQIVKVGLDFETPLVNGLI 149

Query: 85  RF----GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
           +     G +D AC +F++MP+    SW  ++SG+AQNG+  EAL LFREMQ+ ++  ++ 
Sbjct: 150 KLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNGQAVEALKLFREMQAENVSSDAF 209

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
            L S++  C  LGALD G WV+SY+ K+ +K+D +L  AL+ MY+KCGS+D A++VF   
Sbjct: 210 TLASVVGVCGDLGALDLGKWVHSYMDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGM 269

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
            ++DV+A+++ I G A++GH  +A +LF+ MK     P+ +++ +VLSACSH G VEKG 
Sbjct: 270 AERDVTAWSTMIAGYAIHGHGEKALQLFDAMKRSKTIPNCVTFTSVLSACSHSGLVEKGH 329

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
             F +M+  + I P++ HY CMVDL  RAG++  A  FI +MP++P+ V+W TLLGAC+ 
Sbjct: 330 QIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKT 389

Query: 321 HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS 380
           H   ++G+ I   +++ D +    Y+L+SN+Y    +  +  +VR  M+ +  K+  G S
Sbjct: 390 HGYKDLGEHISRKILKLDPSSPENYVLVSNVYASLGRWSSVCQVRSLMKDKAPKKQHGWS 449

Query: 381 LIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVI 440
            IE++ +VH+F+ GD SH + ++IY    ++ +K+K  G+   T  V+ DI+EEEKE  +
Sbjct: 450 SIEINFMVHKFIMGDESHPEREKIYGMLHQMARKLKQVGHVNSTVDVLHDIDEEEKEYAL 509

Query: 441 GYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF 500
           G HSE+LA+A+GL+ T  GS IRIVKN+R+C DCH  +KL+S+V+ R+I +RDR  +HHF
Sbjct: 510 GLHSERLAIAYGLLHTPNGSPIRIVKNLRVCRDCHEVIKLISEVYNREIIVRDRVRFHHF 569

Query: 501 EDGSCSCLEYW 511
            +  CSC +YW
Sbjct: 570 RERGCSCNDYW 580


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/547 (40%), Positives = 322/547 (58%), Gaps = 40/547 (7%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           K  F  +VFV+NSL+  Y+  G++  AR VFD+  D  VVSW S+I+GYV+NG+ +E L 
Sbjct: 113 KYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALN 172

Query: 64  LFDKMPQRN-------------------DVSWNSILGGLV-------------------- 84
           +F +M Q N                   D+     + GLV                    
Sbjct: 173 VFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYA 232

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
           + G V+ A   FN+M K +L+ W  +ISG+A NG  +EA+ LFREM + ++  +S  + S
Sbjct: 233 KRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRS 292

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
            + A AQ+G+L+   W+  YI K   + D+ +   LIDMYAKCGSI LA  VF    DKD
Sbjct: 293 AVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKD 352

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           V  ++  I G  ++GH  EA  L+  MK  G+ P+  ++I +L+AC + G V++G+  FH
Sbjct: 353 VVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFH 412

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
            M D HGI+P   HY+C+VDLLGRAG L +A +FI SMP+KP   +WG LL AC++HR  
Sbjct: 413 LMPD-HGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKV 471

Query: 325 EMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIEL 384
            +G+     L   D  + G Y+ LSN+Y           VR  M ++ + +  G S IE+
Sbjct: 472 RLGEIAAEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEI 531

Query: 385 DGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHS 444
           +G +  F  GDRSH K++EI++  + + K++K  GY     SV+ D+  EE E  + +HS
Sbjct: 532 NGNLETFQVGDRSHPKSKEIFEELDRLEKRLKAAGYVPHMESVLHDLNHEEIEETLCHHS 591

Query: 445 EKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGS 504
           E+LA+A+G+I T PG+ +RI KN+R C +CHSA+KL+SK+  R+I IRD K +HHF+DG 
Sbjct: 592 ERLAVAYGIISTAPGTTLRITKNLRACINCHSAIKLISKLVDREIIIRDAKRFHHFKDGV 651

Query: 505 CSCLEYW 511
           CSC ++W
Sbjct: 652 CSCGDFW 658



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 112/232 (48%), Gaps = 2/232 (0%)

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
           + FG V+ A + F ++ +  ++ W  +I G+ Q       + ++ +MQ   + PN    +
Sbjct: 30  LHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFL 89

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
            +L AC        G  ++    K     +  +  +L+ MYAK G I  A  VF    D+
Sbjct: 90  YVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDR 149

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
            V ++TS I G   NG  +EA  +F+ M+   + PD I+ ++V++A +++  + +G    
Sbjct: 150 TVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQG-KSI 208

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
           H +    G++ E D    +  +  + GL+E A  F   M  KP+ ++W  ++
Sbjct: 209 HGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRME-KPNLILWNAMI 259



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 103/232 (44%), Gaps = 39/232 (16%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V K    ++  +  SL   Y+  G V  AR+ F+  +  +++ WN+MI+GY  NG   E
Sbjct: 211 LVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEE 270

Query: 61  GLKLF----------DKMPQRNDVSWNSILGGL--------------------------- 83
            +KLF          D +  R+ V  ++ +G L                           
Sbjct: 271 AIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLID 330

Query: 84  --VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + GS+  A  VF+++  + +V W V+I G+  +G  +EA+ L+ EM+   + PN   
Sbjct: 331 MYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGT 390

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLA 193
            + LL+AC   G +  G  ++  +    I+      + ++D+  + G ++ A
Sbjct: 391 FIGLLTACKNSGLVKEGWELFHLMPDHGIEPHHQHYSCVVDLLGRAGYLNQA 442



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 76/156 (48%), Gaps = 11/156 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           + K+ +  D FV   LI  Y+ CG +  AR VFD   D DVV W+ MI GY  +G   E 
Sbjct: 313 ISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEA 372

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS----WVVLISG 113
           + L+++M Q     ND ++  +L      G V +   +F+ MP   +      +  ++  
Sbjct: 373 ICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPDHGIEPHHQHYSCVVDL 432

Query: 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
             + G   +A   +  + S+ ++P  ++  +LLSAC
Sbjct: 433 LGRAGYLNQA---YDFIMSMPIKPGVSVWGALLSAC 465


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/521 (40%), Positives = 321/521 (61%), Gaps = 16/521 (3%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGE--- 57
           ++V+N F  +VF+ N+L   Y+ CG +  ARW+FD     ++VSWN MI+GY +NG+   
Sbjct: 181 IIVRN-FLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEK 239

Query: 58  ---ILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGF 114
              +L  ++L   MP  + V+ ++I+    + G VD+A RVF++  ++ +V W  ++ G+
Sbjct: 240 CIGLLHQMRLSGHMP--DQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGY 297

Query: 115 AQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDS 174
           A+NGR ++AL LF EM    +EP+S  L S++S+CA+L +L +G  V+       +  + 
Sbjct: 298 AKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNL 357

Query: 175 ILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK 234
           ++ +ALIDMY+KCG ID A  VF+    ++V ++ + I G A NGH  +A ELFENM  +
Sbjct: 358 LVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQ 417

Query: 235 GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEE 294
              PD++++I +LSAC H  W+E+G  YF S+ + HG+ P LDHYACMV+LLGR G +E+
Sbjct: 418 KFKPDNVTFIGILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQ 477

Query: 295 AENFIASMPMKPDNVIWGTLLGACRVHR---NAEMGQRIGNMLIESDQNHDGRYILLSNI 351
           A   I +M   PD +IW TLL  C       NAE+  R    L E D      YI+LSN+
Sbjct: 478 AVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAAR---HLFELDPTIAVPYIMLSNM 534

Query: 352 YVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEI 411
           Y    + ++   VR  M+ + +K+  G S IE+D  VH F + DR+H ++++IY+    +
Sbjct: 535 YASMGRWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNML 594

Query: 412 VKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPG-SVIRIVKNIRI 470
           + K++  G+   T  V+ D+ E+EK   I +HSEKLALAFGLI    G S IRI+KNIRI
Sbjct: 595 IGKLQEEGFTPNTNLVLHDVGEDEKFKSICFHSEKLALAFGLIKKPNGISPIRIIKNIRI 654

Query: 471 CSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           C+DCH  MK  S++  R+I +RD   +HHF  G CSC + W
Sbjct: 655 CNDCHEFMKFASRIIGRQIILRDSNRFHHFSTGKCSCNDNW 695



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 117/218 (53%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N +++ Y + G++ +   LFDKM +R+  SWN++L    + GS+ +    F++MP R  V
Sbjct: 62  NQLLHLYAKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMPFRDSV 121

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           S+   I+GF+ N  P+E+L LF+ MQ    EP    +VS+L+A AQL  L YG  ++  I
Sbjct: 122 SYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQIHGSI 181

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
             +    +  +  AL DMYAKCG I+ A  +F     K++ ++   I G A NG   +  
Sbjct: 182 IVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCI 241

Query: 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
            L   M+  G  PD ++   +++A    G V++    F
Sbjct: 242 GLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVF 279


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/553 (39%), Positives = 333/553 (60%), Gaps = 43/553 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVC---GRVRDARWVFDESDDLDVVSWNSMINGYVRNGEI 58
           V++   A DV V  SL+  Y+ C   G V D+R VF++  + +V+SW ++I  YV++GE 
Sbjct: 257 VIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGEC 316

Query: 59  -LEGLKLFDKMP----QRNDVSWNSIL---GGL--------------------------- 83
             E ++LF KM     + N  S++S+L   G L                           
Sbjct: 317 DKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNS 376

Query: 84  -----VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPN 138
                 R G ++DA + F+ + +++LVS+  ++ G+A+N + +EA  LF E+    +  +
Sbjct: 377 LISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGIS 436

Query: 139 SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH 198
           +    SLLS  A +GA+  G  ++  + K   K +  +C ALI MY++CG+I+ A QVF+
Sbjct: 437 AFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFN 496

Query: 199 SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEK 258
              D++V ++TS I G A +G +  A E+F  M   G  P+ I+Y+AVLSACSH+G + +
Sbjct: 497 EMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISE 556

Query: 259 GFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
           G  +F+SM+  HGI P ++HYACMVDLLGR+GLL EA  FI SMP+  D ++W TLLGAC
Sbjct: 557 GQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGAC 616

Query: 319 RVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPG 378
           RVH N E+G+    M++E + +    YILLSN++    + ++  ++RK+M++R + +  G
Sbjct: 617 RVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAG 676

Query: 379 CSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKET 438
           CS IE++  VH F  G+ SH +  +IYQ  +++  KIK  GY  +T  V+ DIEEE+KE 
Sbjct: 677 CSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQ 736

Query: 439 VIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYH 498
            +  HSEK+A+AFGLI T     IRI KN+R+C DCH+A+K +S    R+I +RD   +H
Sbjct: 737 FLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFH 796

Query: 499 HFEDGSCSCLEYW 511
           H ++G CSC +YW
Sbjct: 797 HIKNGVCSCNDYW 809



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 149/298 (50%), Gaps = 46/298 (15%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDE-SDDLDVVSWNSMINGYVRNGEILE 60
           ++++    D  V N+LI  YS CG    AR +F+   +  D+VSW++M++ +  N    +
Sbjct: 52  LMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQ 111

Query: 61  GLKLFDKMPQ------------------RNDVSW--NSILGGLVRFGSVD-DAC------ 93
            +  F  M +                    + +W    I G +V+ G ++ D C      
Sbjct: 112 AIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELI 171

Query: 94  --------------RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS 139
                         +VF++MP+R+LV+W ++I+ FAQ G  ++A+ LF +M+     P+ 
Sbjct: 172 DMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDR 231

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC---GSIDLAMQV 196
               S+LSAC +LG L  G  ++S + +  + LD  +  +L+DMYAKC   GS+D + +V
Sbjct: 232 FTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKV 291

Query: 197 FHSYGDKDVSAYTSAIFGLAMNGH-SIEAFELFENMKSKGISPDSISYIAVLSACSHL 253
           F    + +V ++T+ I     +G    EA ELF  M S  I P+  S+ +VL AC +L
Sbjct: 292 FEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNL 349



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 126/263 (47%), Gaps = 12/263 (4%)

Query: 63  KLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMP-KRSLVSWVVLISGFAQNGRPK 121
           KL     + + V  N+++    + G  + A  +F  M  KR LVSW  ++S FA N    
Sbjct: 51  KLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEW 110

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC-IKLDSILCAAL 180
           +A+  F +M  L   PN     +++ AC+       G  +Y ++ K   ++ D  +   L
Sbjct: 111 QAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCEL 170

Query: 181 IDMYAKCGSIDL--AMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISP 238
           IDM+ K GS DL  A +VF    ++++  +T  I   A  G + +A +LF +M+  G  P
Sbjct: 171 IDMFVK-GSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVP 229

Query: 239 DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRA---GLLEEA 295
           D  +Y +VLSAC+ LG +  G    HS     G+  ++     +VD+  +    G ++++
Sbjct: 230 DRFTYSSVLSACTELGLLALG-KQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDS 288

Query: 296 ENFIASMPMKPDNVI-WGTLLGA 317
                 MP    NV+ W  ++ A
Sbjct: 289 RKVFEQMP--EHNVMSWTAIITA 309



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 70/149 (46%), Gaps = 3/149 (2%)

Query: 118 GRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILC 177
           GR   A +    M   +  P+      LL +C +      G  V+  + +  ++LDS++ 
Sbjct: 5   GRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVL 64

Query: 178 AALIDMYAKCGSIDLAMQVFHSYGDK-DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGI 236
             LI +Y+KCG  + A  +F   G+K D+ ++++ +   A N    +A   F +M   G 
Sbjct: 65  NTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGF 124

Query: 237 SPDSISYIAVLSACS--HLGWVEKGFYYF 263
            P+   + AV+ ACS  +  WV +  Y F
Sbjct: 125 YPNEYCFAAVIRACSNANYAWVGEIIYGF 153


>gi|357119334|ref|XP_003561397.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Brachypodium distachyon]
          Length = 635

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/512 (41%), Positives = 308/512 (60%), Gaps = 32/512 (6%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + VK   A D++V+N+L  FY VCG V   R VFDE                        
Sbjct: 155 LAVKAGAAGDLYVRNALTHFYGVCGDVGAMRTVFDE------------------------ 190

Query: 61  GLKLFDKMPQ-RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGR 119
                  +P+ R+ V+WN++L G VR G V  A  VF +MP R  VSW  L+ G+ + G 
Sbjct: 191 -------LPRVRDVVTWNAVLAGYVRAGMVRAAREVFEEMPVRDEVSWSTLVGGYVKEGE 243

Query: 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
              AL +FR+M    +  N A +V+ LSA AQ+G L++G +V+  +Q+  + +   + AA
Sbjct: 244 LDVALGVFRDMVEKGVRVNEAAVVTALSAAAQMGLLEHGRFVHEVVQRTGMPVSVNVGAA 303

Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
           L+DM++KCG + +A +VF     +DV A+ + I GLA +G   +A ELF     +G+ P 
Sbjct: 304 LVDMFSKCGCVAVAREVFDGMPRRDVFAWNAMICGLASHGLGQDAVELFWRFLDEGLWPT 363

Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI 299
            I+++ VL+ACS  G V +G  YF  M D + I+PE++HY CMVDLLGRAGL+ EA   I
Sbjct: 364 DITFVGVLNACSRCGLVAEGRRYFKLMVDKYRIEPEMEHYGCMVDLLGRAGLVSEAIELI 423

Query: 300 ASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGE 359
             M + PD V+WGT+L AC+ H   ++G  +GN LIE +  HDG Y+LL++IY +  K +
Sbjct: 424 EGMHIAPDPVLWGTVLSACKTHNLVDLGITVGNKLIELEPAHDGHYVLLASIYAKAKKWD 483

Query: 360 NAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYG 419
              EVRK M  R   ++ G SL+E  G +H+FL GD  H+ + +IY   + I +++ + G
Sbjct: 484 EVREVRKLMSSRGTGKSAGWSLMEAQGNLHKFLVGDMDHKDSVQIYNMLDMINRRLADAG 543

Query: 420 YNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMK 479
           Y  +  SV+ DI +EEK   I  HSE+LA+A+G I T+ GS IRIVKN+++C DCH   K
Sbjct: 544 YVPDVSSVLHDIGDEEKVHAIKVHSERLAIAYGFIVTEVGSPIRIVKNLQVCGDCHEFSK 603

Query: 480 LVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           +V+KVF R+I +RD   +HH ++G CSCL+YW
Sbjct: 604 MVTKVFNREIIVRDGSRFHHMKEGKCSCLDYW 635



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/232 (20%), Positives = 101/232 (43%), Gaps = 18/232 (7%)

Query: 94  RVFNQMPKRSLVSWVVLISGFAQNGRPKEALA---LFREMQSLDLEPNSA-------ILV 143
           R+F  +P+R+L S+  L++  + +    +  A   L   + +L ++  +A        L 
Sbjct: 113 RLFPNLPRRNLHSFTFLLASISNHLDATDHRASSFLGSHVHALAVKAGAAGDLYVRNALT 172

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
                C  +GA+     V+  + +     D +   A++  Y + G +  A +VF     +
Sbjct: 173 HFYGVCGDVGAM---RTVFDELPR---VRDVVTWNAVLAGYVRAGMVRAAREVFEEMPVR 226

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           D  ++++ + G    G    A  +F +M  KG+  +  + +  LSA + +G +E G  + 
Sbjct: 227 DEVSWSTLVGGYVKEGELDVALGVFRDMVEKGVRVNEAAVVTALSAAAQMGLLEHG-RFV 285

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
           H +    G+   ++  A +VD+  + G +  A      MP + D   W  ++
Sbjct: 286 HEVVQRTGMPVSVNVGAALVDMFSKCGCVAVAREVFDGMPRR-DVFAWNAMI 336


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/553 (39%), Positives = 333/553 (60%), Gaps = 43/553 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVC---GRVRDARWVFDESDDLDVVSWNSMINGYVRNGEI 58
           V++   A DV V  SL+  Y+ C   G V D+R VF++  + +V+SW ++I  YV++GE 
Sbjct: 275 VIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGEC 334

Query: 59  -LEGLKLFDKMP----QRNDVSWNSIL---GGL--------------------------- 83
             E ++LF KM     + N  S++S+L   G L                           
Sbjct: 335 DKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNS 394

Query: 84  -----VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPN 138
                 R G ++DA + F+ + +++LVS+  ++ G+A+N + +EA  LF E+    +  +
Sbjct: 395 LISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGIS 454

Query: 139 SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH 198
           +    SLLS  A +GA+  G  ++  + K   K +  +C ALI MY++CG+I+ A QVF+
Sbjct: 455 AFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFN 514

Query: 199 SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEK 258
              D++V ++TS I G A +G +  A E+F  M   G  P+ I+Y+AVLSACSH+G + +
Sbjct: 515 EMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISE 574

Query: 259 GFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
           G  +F+SM+  HGI P ++HYACMVDLLGR+GLL EA  FI SMP+  D ++W TLLGAC
Sbjct: 575 GQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGAC 634

Query: 319 RVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPG 378
           RVH N E+G+    M++E + +    YILLSN++    + ++  ++RK+M++R + +  G
Sbjct: 635 RVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAG 694

Query: 379 CSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKET 438
           CS IE++  VH F  G+ SH +  +IYQ  +++  KIK  GY  +T  V+ DIEEE+KE 
Sbjct: 695 CSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQ 754

Query: 439 VIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYH 498
            +  HSEK+A+AFGLI T     IRI KN+R+C DCH+A+K +S    R+I +RD   +H
Sbjct: 755 FLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFH 814

Query: 499 HFEDGSCSCLEYW 511
           H ++G CSC +YW
Sbjct: 815 HIKNGVCSCNDYW 827



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 95/344 (27%), Positives = 166/344 (48%), Gaps = 55/344 (15%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDE-SDDLDVVSWNSMINGYVRNGEILE 60
           ++++    D  V N+LI  YS CG    AR +F+   +  D+VSW++M++ +  N    +
Sbjct: 70  LMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQ 129

Query: 61  GLKLFDKMPQ------------------RNDVSW--NSILGGLVRFGSVD-DAC------ 93
            +  F  M +                    + +W    I G +V+ G ++ D C      
Sbjct: 130 AIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELI 189

Query: 94  --------------RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS 139
                         +VF++MP+R+LV+W ++I+ FAQ G  ++A+ LF +M+     P+ 
Sbjct: 190 DMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDR 249

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC---GSIDLAMQV 196
               S+LSAC +LG L  G  ++S + +  + LD  +  +L+DMYAKC   GS+D + +V
Sbjct: 250 FTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKV 309

Query: 197 FHSYGDKDVSAYTSAIFGLAMNGH-SIEAFELFENMKSKGISPDSISYIAVLSACSHLGW 255
           F    + +V ++T+ I     +G    EA ELF  M S  I P+  S+ +VL AC +L  
Sbjct: 310 FEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSD 369

Query: 256 VEKGFYYFHSMFDVHGIKPELDHYAC----MVDLLGRAGLLEEA 295
              G   +      + +K  +    C    ++ +  R+G +E+A
Sbjct: 370 PYTGEQVYS-----YAVKLGIASVNCVGNSLISMYARSGRMEDA 408



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 151/321 (47%), Gaps = 21/321 (6%)

Query: 13  VKNSLIQFYSVCGRVRDARWVFD----ESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM 68
           +KN LI+   V GR+  A    D    ++   D+ +++ ++   +R      G  +  K+
Sbjct: 12  LKNRLIRQLDV-GRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKL 70

Query: 69  PQR----NDVSWNSILGGLVRFGSVDDACRVFNQMP-KRSLVSWVVLISGFAQNGRPKEA 123
            Q     + V  N+++    + G  + A  +F  M  KR LVSW  ++S FA N    +A
Sbjct: 71  MQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQA 130

Query: 124 LALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC-IKLDSILCAALID 182
           +  F +M  L   PN     +++ AC+       G  +Y ++ K   ++ D  +   LID
Sbjct: 131 IWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELID 190

Query: 183 MYAKCGSIDL--AMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           M+ K GS DL  A +VF    ++++  +T  I   A  G + +A +LF +M+  G  PD 
Sbjct: 191 MFVK-GSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDR 249

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRA---GLLEEAEN 297
            +Y +VLSAC+ LG +  G    HS     G+  ++     +VD+  +    G ++++  
Sbjct: 250 FTYSSVLSACTELGLLALG-KQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRK 308

Query: 298 FIASMPMKPDNVI-WGTLLGA 317
               MP    NV+ W  ++ A
Sbjct: 309 VFEQMP--EHNVMSWTAIITA 327


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/521 (40%), Positives = 321/521 (61%), Gaps = 16/521 (3%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGE--- 57
           ++V+N F  +VF+ N+L   Y+ CG +  ARW+FD     ++VSWN MI+GY +NG+   
Sbjct: 181 IIVRN-FLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEK 239

Query: 58  ---ILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGF 114
              +L  ++L   MP  + V+ ++I+    + G VD+A RVF++  ++ +V W  ++ G+
Sbjct: 240 CIGLLHQMRLSGHMP--DQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGY 297

Query: 115 AQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDS 174
           A+NGR ++AL LF EM    +EP+S  L S++S+CA+L +L +G  V+       +  + 
Sbjct: 298 AKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNL 357

Query: 175 ILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK 234
           ++ +ALIDMY+KCG ID A  VF+    ++V ++ + I G A NGH  +A ELFENM  +
Sbjct: 358 LVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQ 417

Query: 235 GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEE 294
              PD++++I +LSAC H  W+E+G  YF S+ + HG+ P LDHYACMV+LLGR G +E+
Sbjct: 418 KFKPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQ 477

Query: 295 AENFIASMPMKPDNVIWGTLLGACRVHR---NAEMGQRIGNMLIESDQNHDGRYILLSNI 351
           A   I +M   PD +IW TLL  C       NAE+  R    L E D      YI+LSN+
Sbjct: 478 AVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAAR---HLFELDPTIAVPYIMLSNM 534

Query: 352 YVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEI 411
           Y    + ++   VR  M+ + +K+  G S IE+D  VH F + DR+H ++++IY+    +
Sbjct: 535 YASMGRWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNML 594

Query: 412 VKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPG-SVIRIVKNIRI 470
           + K++  G+   T  V+ D+ E+EK   I +HSEKLALAFGLI    G S IRI+KNIRI
Sbjct: 595 IGKLQEEGFTPNTNLVLHDVGEDEKFKSICFHSEKLALAFGLIKKPNGISPIRIIKNIRI 654

Query: 471 CSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           C+DCH  MK  S++  R+I +RD   +HHF  G CSC + W
Sbjct: 655 CNDCHEFMKFASRIIGRQIILRDSNRFHHFSTGKCSCNDNW 695



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 117/218 (53%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N +++ Y + G++ +   LFDKM +R+  SWN++L    + GS+ +    F++MP R  V
Sbjct: 62  NQLLHLYAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMPFRDSV 121

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           S+   I+GF+ N  P+E+L LF+ MQ    EP    +VS+L+A AQL  L YG  ++  I
Sbjct: 122 SYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQIHGSI 181

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
             +    +  +  AL DMYAKCG I+ A  +F     K++ ++   I G A NG   +  
Sbjct: 182 IVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCI 241

Query: 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
            L   M+  G  PD ++   +++A    G V++    F
Sbjct: 242 GLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVF 279


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/549 (38%), Positives = 326/549 (59%), Gaps = 39/549 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V K  F  D+ V+N+LI  YS CG ++DAR VFD+    DV+SW +MI G  ++G   E 
Sbjct: 354 VAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEA 413

Query: 62  LKLFDKMPQR----NDVSWNSILGG-------------------------------LVRF 86
           L ++ +M Q     N V++ SIL                                 LV  
Sbjct: 414 LTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNM 473

Query: 87  ----GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
               GSV DA +VF++M +R +V++  +I G+A +   KEAL LF  +Q   L+P+    
Sbjct: 474 YSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTY 533

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           +++L+ACA  G+L++   +++ ++K     D+ +  AL+  YAKCGS   A  VF     
Sbjct: 534 INMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTK 593

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           ++V ++ + I G A +G   +A +LFE MK +G+ PD ++++++LSACSH G +E+G  Y
Sbjct: 594 RNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRY 653

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F SM     I P ++HY CMVDLLGRAG L+EAE  I +MP + +  IWG LLGACR+H 
Sbjct: 654 FCSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLGACRIHG 713

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           N  + +R     ++ D ++   Y+ LS++Y      ++A ++RK M +R + + PG S I
Sbjct: 714 NVPVAERAAESSLKLDLDNAVVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWI 773

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           ++   +H F+A DRSH ++++IY   + +   +K  GY  +TRSVM D++E EKE  + +
Sbjct: 774 QVGDKLHYFVAEDRSHPQSEKIYAELDRLTHAMKMKGYVPDTRSVMHDVDEGEKENAVCH 833

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSE+LA+A+GLI T PG+ I I KN+R+C DCH+A K +SK+  R+I  RD   +HHF+D
Sbjct: 834 HSERLAIAYGLISTPPGTRIHIFKNLRVCPDCHTATKFISKIVDREIIARDVNRFHHFKD 893

Query: 503 GSCSCLEYW 511
           G CSC +YW
Sbjct: 894 GVCSCGDYW 902



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 122/447 (27%), Positives = 209/447 (46%), Gaps = 75/447 (16%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLD--VVSWNSMINGYVRNGEIL 59
           ++++    D +  N+LI  Y  CG + +AR V+ +   ++  V SWN+M+ GY++ G I 
Sbjct: 49  IIQHRTVPDQYTVNALINMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIE 108

Query: 60  EGLKLFDKM------PQRNDV-------------SW--------------------NSIL 80
           + LKL  +M      P R  +              W                    N IL
Sbjct: 109 KALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCIL 168

Query: 81  GGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
               + GS+++A  VF++M K+S+VSW + I G+A  GR + A  +F++M+   + PN  
Sbjct: 169 NMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRI 228

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
             +S+L+A +   AL +G  V+S I     + D+ +  AL+ MYAKCGS     QVF   
Sbjct: 229 TYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKL 288

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC---SHLGW-- 255
            ++D+ A+ + I GLA  G+  EA E++  M+ +G+ P+ I+Y+ +L+AC   + L W  
Sbjct: 289 VNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGK 348

Query: 256 ------VEKGFY-------YFHSMFDVHG------------IKPELDHYACMVDLLGRAG 290
                  + GF           SM+   G            ++ ++  +  M+  L ++G
Sbjct: 349 EIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSG 408

Query: 291 LLEEAENFIASMP---MKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRY-I 346
              EA      M    ++P+ V + ++L AC      E G+RI   ++E+    D     
Sbjct: 409 FGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGN 468

Query: 347 LLSNIYVETLKGENAEEVRKTMRKRKI 373
            L N+Y      ++A +V   M +R I
Sbjct: 469 TLVNMYSMCGSVKDARQVFDRMIQRDI 495



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 95/352 (26%), Positives = 174/352 (49%), Gaps = 43/352 (12%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D  V  +L++ Y+ CG  +D R VF++  + D+++WN+MI G    G   E  +++++M 
Sbjct: 261 DTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQ 320

Query: 70  QR----NDVSW-----------------------------------NSILGGLVRFGSVD 90
           +     N +++                                   N+++    R GS+ 
Sbjct: 321 REGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIK 380

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           DA  VF++M ++ ++SW  +I G A++G   EAL +++EMQ   +EPN     S+L+AC+
Sbjct: 381 DARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACS 440

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
              AL++G  ++  + +  +  D+ +   L++MY+ CGS+  A QVF     +D+ AY +
Sbjct: 441 SPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNA 500

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I G A +    EA +LF+ ++ +G+ PD ++YI +L+AC++ G +E      H++    
Sbjct: 501 MIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWA-REIHTLVRKG 559

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVI-WGTLLGACRVH 321
           G   +      +V    + G   +A   I    M   NVI W  ++G    H
Sbjct: 560 GFFSDTSVGNALVSTYAKCGSFSDAS--IVFEKMTKRNVISWNAIIGGSAQH 609



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 110/402 (27%), Positives = 182/402 (45%), Gaps = 42/402 (10%)

Query: 9   YDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM 68
           +DV V N ++  Y+ CG + +AR VFD+ +   VVSW   I GY   G      ++F KM
Sbjct: 159 FDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKM 218

Query: 69  PQR----NDVSWNSILGGL-----------------------------------VRFGSV 89
            Q     N +++ S+L                                       + GS 
Sbjct: 219 EQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSY 278

Query: 90  DDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
            D  +VF ++  R L++W  +I G A+ G  +EA  ++ +MQ   + PN    V LL+AC
Sbjct: 279 KDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNAC 338

Query: 150 AQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYT 209
               AL +G  ++S + K     D  +  ALI MY++CGSI  A  VF     KDV ++T
Sbjct: 339 VNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWT 398

Query: 210 SAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDV 269
           + I GLA +G   EA  +++ M+  G+ P+ ++Y ++L+ACS    +E G    H     
Sbjct: 399 AMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWG-RRIHQQVVE 457

Query: 270 HGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQR 329
            G+  +      +V++    G +++A      M ++ D V +  ++G    H   +   +
Sbjct: 458 AGLATDAHVGNTLVNMYSMCGSVKDARQVFDRM-IQRDIVAYNAMIGGYAAHNLGKEALK 516

Query: 330 IGNMLIESDQNHDG-RYILLSNIYVETLKGENAEEVRKTMRK 370
           + + L E     D   YI + N    +   E A E+   +RK
Sbjct: 517 LFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRK 558



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 101/208 (48%), Gaps = 19/208 (9%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V K  F  D  V N+L+  Y+ CG   DA  VF++    +V+SWN++I G  ++G   +
Sbjct: 555 LVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNAIIGGSAQHGRGQD 614

Query: 61  GLKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPK-----RSLVSWVVLI 111
            L+LF++M     + + V++ S+L      G +++  R F  M +      ++  +  ++
Sbjct: 615 ALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQDFAIIPTIEHYGCMV 674

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK 171
               + G+  EA AL + M     + N+ I  +LL AC   G +     V     +  +K
Sbjct: 675 DLLGRAGQLDEAEALIKTM---PFQANTRIWGALLGACRIHGNVP----VAERAAESSLK 727

Query: 172 LD---SILCAALIDMYAKCGSIDLAMQV 196
           LD   +++  AL  MYA  G  D A ++
Sbjct: 728 LDLDNAVVYVALSHMYAAAGMWDSAAKL 755


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/542 (39%), Positives = 330/542 (60%), Gaps = 45/542 (8%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           +V    +++  Y+    +  AR  FD   +  VVSWN+M++GY +NG   E L+LFD+M 
Sbjct: 193 NVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMV 252

Query: 70  ----QRNDVSWNSILGG------------LVR-----------------------FGSVD 90
               + ++ +W +++              LVR                       FG +D
Sbjct: 253 NAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALLDMYAKFGDLD 312

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM-QSLDLEPNSAILVSLLSAC 149
            A ++FN MP R++V+W  +I+G+AQNG+   A+ LF+EM  +  L P+   +VS++SAC
Sbjct: 313 SARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISAC 372

Query: 150 AQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYT 209
             LGAL+ GNWV  ++ +  IKL      A+I MY++CGS++ A +VF     +DV +Y 
Sbjct: 373 GHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYN 432

Query: 210 SAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDV 269
           + I G A +GH +EA  L   MK  GI PD +++I VL+ACSH G +E+G   F S+ D 
Sbjct: 433 TLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKD- 491

Query: 270 HGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQR 329
               P +DHYACMVDLLGR G LE+A+  +  MPM+P   ++G+LL A R+H+  E+G+ 
Sbjct: 492 ----PAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGEL 547

Query: 330 IGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVH 389
             N L E + ++ G +ILLSNIY    + ++ E +R+ M+K  +K+  G S +E  G +H
Sbjct: 548 AANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLH 607

Query: 390 EFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLAL 449
           +F+  DRSHE++ +IYQ   E+ KK++  GY  +   V+ D+EEEEKE ++G HSEKLA+
Sbjct: 608 KFIVADRSHERSDDIYQLLIELRKKMREAGYIADKSCVLRDVEEEEKEEIVGTHSEKLAI 667

Query: 450 AFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLE 509
            + L+ ++ G+VIR+VKN+R+C DCH+A+K++SK+  R I +RD   +H F DG CSC +
Sbjct: 668 CYALLVSEAGAVIRVVKNLRVCWDCHTAIKMISKLEGRVIIVRDNNRFHCFNDGLCSCKD 727

Query: 510 YW 511
           YW
Sbjct: 728 YW 729



 Score =  201 bits (510), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 113/323 (34%), Positives = 187/323 (57%), Gaps = 5/323 (1%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLD--VVSWNSMINGYVRNGEIL 59
           V+K     D FV+N++I  Y+  G +  AR VFDE  D +  V  WN+M++GY +     
Sbjct: 121 VLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEG 180

Query: 60  EGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGR 119
           +   LFD MP+RN ++W +++ G  +   ++ A R F+ MP+RS+VSW  ++SG+AQNG 
Sbjct: 181 QAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGL 240

Query: 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
            +EAL LF EM +  +EP+    V+++SAC+  G       +   + +K I+L+  +  A
Sbjct: 241 AEEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTA 300

Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM-KSKGISP 238
           L+DMYAK G +D A ++F++   ++V  + S I G A NG S  A ELF+ M  +K ++P
Sbjct: 301 LLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTP 360

Query: 239 DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENF 298
           D ++ ++V+SAC HLG +E G +    + + + IK  +  +  M+ +  R G +E+A+  
Sbjct: 361 DEVTMVSVISACGHLGALELGNWVVRFLTE-NQIKLSISGHNAMIFMYSRCGSMEDAKRV 419

Query: 299 IASMPMKPDNVIWGTLLGACRVH 321
              M  + D V + TL+     H
Sbjct: 420 FQEMATR-DVVSYNTLISGFAAH 441



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 78/151 (51%), Gaps = 7/151 (4%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           + +N     +   N++I  YS CG + DA+ VF E    DVVS+N++I+G+  +G  +E 
Sbjct: 388 LTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEA 447

Query: 62  LKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQN 117
           + L   M     + + V++  +L      G +++  +VF  +   ++  +  ++    + 
Sbjct: 448 INLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKDPAIDHYACMVDLLGRV 507

Query: 118 GRPKEALALFREMQSLDLEPNSAILVSLLSA 148
           G  ++A    R M+ + +EP++ +  SLL+A
Sbjct: 508 GELEDAK---RTMERMPMEPHAGVYGSLLNA 535


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/547 (40%), Positives = 322/547 (58%), Gaps = 40/547 (7%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           K  F  +VFV+NSL+  Y+  G++  AR VFD+  D  VVSW S+I+GYV+NG+ +E L 
Sbjct: 128 KYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALN 187

Query: 64  LFDKMPQRN-------------------DVSWNSILGGLV-------------------- 84
           +F +M Q N                   D+     + GLV                    
Sbjct: 188 VFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYA 247

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
           + G V+ A   FN+M K +L+ W  +ISG+A NG  +EA+ LFREM + ++  +S  + S
Sbjct: 248 KRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRS 307

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
            + A AQ+G+L+   W+  YI K   + D+ +   LIDMYAKCGSI LA  VF    DKD
Sbjct: 308 AVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKD 367

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           V  ++  I G  ++GH  EA  L+  MK  G+ P+  ++I +L+AC + G V++G+  FH
Sbjct: 368 VVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFH 427

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
            M D HGI+P   HY+C+VDLLGRAG L +A +FI SMP+KP   +WG LL AC++HR  
Sbjct: 428 LMPD-HGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKV 486

Query: 325 EMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIEL 384
            +G+     L   D  + G Y+ LSN+Y           VR  M ++ + +  G S IE+
Sbjct: 487 RLGEIAAEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEI 546

Query: 385 DGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHS 444
           +G +  F  GDRSH K++EI++  + + K++K  GY     SV+ D+  EE E  + +HS
Sbjct: 547 NGNLETFQVGDRSHPKSKEIFEELDRLEKRLKAAGYVPHMESVLHDLNHEEIEETLCHHS 606

Query: 445 EKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGS 504
           E+LA+A+G+I T PG+ +RI KN+R C +CHSA+KL+SK+  R+I IRD K +HHF+DG 
Sbjct: 607 ERLAVAYGIISTAPGTTLRITKNLRACINCHSAIKLISKLVDREIIIRDAKRFHHFKDGV 666

Query: 505 CSCLEYW 511
           CSC ++W
Sbjct: 667 CSCGDFW 673



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 112/232 (48%), Gaps = 2/232 (0%)

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
           + FG V+ A + F ++ +  ++ W  +I G+ Q       + ++ +MQ   + PN    +
Sbjct: 45  LHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFL 104

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
            +L AC        G  ++    K     +  +  +L+ MYAK G I  A  VF    D+
Sbjct: 105 YVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDR 164

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
            V ++TS I G   NG  +EA  +F+ M+   + PD I+ ++V++A +++  + +G    
Sbjct: 165 TVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQG-KSI 223

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
           H +    G++ E D    +  +  + GL+E A  F   M  KP+ ++W  ++
Sbjct: 224 HGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRME-KPNLILWNAMI 274



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 103/232 (44%), Gaps = 39/232 (16%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V K    ++  +  SL   Y+  G V  AR+ F+  +  +++ WN+MI+GY  NG   E
Sbjct: 226 LVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEE 285

Query: 61  GLKLF----------DKMPQRNDVSWNSILGGL--------------------------- 83
            +KLF          D +  R+ V  ++ +G L                           
Sbjct: 286 AIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLID 345

Query: 84  --VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + GS+  A  VF+++  + +V W V+I G+  +G  +EA+ L+ EM+   + PN   
Sbjct: 346 MYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGT 405

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLA 193
            + LL+AC   G +  G  ++  +    I+      + ++D+  + G ++ A
Sbjct: 406 FIGLLTACKNSGLVKEGWELFHLMPDHGIEPHHQHYSCVVDLLGRAGYLNQA 457



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 76/156 (48%), Gaps = 11/156 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           + K+ +  D FV   LI  Y+ CG +  AR VFD   D DVV W+ MI GY  +G   E 
Sbjct: 328 ISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEA 387

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS----WVVLISG 113
           + L+++M Q     ND ++  +L      G V +   +F+ MP   +      +  ++  
Sbjct: 388 ICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPDHGIEPHHQHYSCVVDL 447

Query: 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
             + G   +A   +  + S+ ++P  ++  +LLSAC
Sbjct: 448 LGRAGYLNQA---YDFIMSMPIKPGVSVWGALLSAC 480


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/536 (39%), Positives = 305/536 (56%), Gaps = 40/536 (7%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQR--- 71
           N++I  Y+  GR+  AR +FDE    D  SWN++I+GYV  G  +E L LF  M +    
Sbjct: 133 NTMISGYANVGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEALDLFRMMQENESS 192

Query: 72  -------------------------------------NDVSWNSILGGLVRFGSVDDACR 94
                                                ++V W ++L    + GS+++A  
Sbjct: 193 NCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARG 252

Query: 95  VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA 154
           +F+QM  + +VSW  +I    ++GR KE  +LFR++    + PN      +L+ACA L A
Sbjct: 253 IFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAA 312

Query: 155 LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFG 214
              G  V+ Y+ +      S   +AL+ +Y+KCG+ + A +VF+     D+ ++TS I G
Sbjct: 313 EQMGKEVHGYMTRVGYDPFSFAASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVG 372

Query: 215 LAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP 274
            A NG    A + FE++   G  PD I+++ VLSAC+H G V+ G  YFHS+ + HG+  
Sbjct: 373 YAQNGQPDMALQFFESLLRSGTKPDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVH 432

Query: 275 ELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNML 334
             DHYAC++DLL R+G  +EAEN I +MPMKPD  +W +LLG CR+H N E+ +R    L
Sbjct: 433 TADHYACVIDLLARSGRFKEAENIIDNMPMKPDKFLWASLLGGCRIHGNIELAERAAKAL 492

Query: 335 IESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAG 394
            E +  +   YI LSNIY          +VR  M  R I + PG S IE+   VH FL G
Sbjct: 493 FELEPENPATYITLSNIYANAGLWTEETKVRNDMDNRGIVKKPGKSWIEIKRQVHVFLVG 552

Query: 395 DRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLI 454
           D SH K  +I+++  E+ KK+K  GY  +T  V+ D+EEE+KE  I YHSEKLA+AFG+I
Sbjct: 553 DTSHPKISDIHEYLGELSKKMKEEGYVADTNFVLHDVEEEQKEQNIFYHSEKLAVAFGII 612

Query: 455 CTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEY 510
            T PG+ I++ KN+R C DCH+AMK +SK+ +RKI +RD   +H F DGSCSC +Y
Sbjct: 613 STSPGTPIKVFKNLRTCVDCHNAMKYISKIVQRKIIVRDSNRFHCFVDGSCSCKDY 668



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 134/337 (39%), Gaps = 84/337 (24%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++++    D  V  +L+  Y  CG + +AR +FD+  D D+VSW +MI+    +G   EG
Sbjct: 222 LIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEG 281

Query: 62  LKLFDKM----PQRNDVSWNSIL----------------GGLVRF--------------- 86
             LF  +     + N+ ++  +L                G + R                
Sbjct: 282 FSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAASALVHV 341

Query: 87  ----GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
               G+ + A RVFNQMP+  LVSW  LI G+AQNG+P  AL  F  +     +P+    
Sbjct: 342 YSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEITF 401

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           V +LSAC   G +D G                                   ++ FHS  +
Sbjct: 402 VGVLSACTHAGLVDIG-----------------------------------LEYFHSVKE 426

Query: 203 K-----DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVE 257
           K         Y   I  LA +G   EA  + +NM  K   PD   + ++L  C   G +E
Sbjct: 427 KHGLVHTADHYACVIDLLARSGRFKEAENIIDNMPMK---PDKFLWASLLGGCRIHGNIE 483

Query: 258 KGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEE 294
                  ++F++    P    Y  + ++   AGL  E
Sbjct: 484 LAERAAKALFELEPENPAT--YITLSNIYANAGLWTE 518



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 106/244 (43%), Gaps = 44/244 (18%)

Query: 110 LISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC 169
           +I  F Q  R KEA+     +     +P+  +  +L++AC +   L+ G  V+++ +   
Sbjct: 38  IIELFCQQNRLKEAVDYLHRIP----QPSPRLYSTLIAACLRHRKLELGKRVHAHTKASN 93

Query: 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFE 229
                ++   LI MYAKCGS+  A  +F     KD+ ++ + I G A  G   +A +LF+
Sbjct: 94  FIPGIVISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFD 153

Query: 230 NMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH----------SMF------------ 267
            M  +    D+ S+ AV+S     GW  +    F           +MF            
Sbjct: 154 EMPHR----DNFSWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAI 209

Query: 268 -------DVHG--IKP--ELDH--YACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTL 314
                  ++HG  I+   ELD   +  ++DL G+ G L EA      M  K D V W T+
Sbjct: 210 SSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADK-DIVSWTTM 268

Query: 315 LGAC 318
           +  C
Sbjct: 269 IHRC 272


>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1221

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/511 (41%), Positives = 320/511 (62%), Gaps = 2/511 (0%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
            +K+     +FV  +LI  Y  CG V  AR VFDE    ++V+WN+++    R  ++   
Sbjct: 299 ALKHGLDSHLFVATTLIGMYGECGCVGFARKVFDEMPQPNLVAWNAVVTACFRGNDVSGA 358

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
            ++FDKM  RN  SWN +L G ++ G ++ A R+F++MP R  VSW  +I GF+ NG   
Sbjct: 359 REIFDKMLVRNHTSWNVMLAGYIKAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNGSFN 418

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
           E+ + FRE+   ++ PN   L  +LSAC+Q GA ++G  ++ +++K        +  ALI
Sbjct: 419 ESFSYFRELLRAEMRPNEVSLTGVLSACSQSGAFEFGKTLHGFVEKSGYSWIVSVNNALI 478

Query: 182 DMYAKCGSIDLAMQVFHSYGDK-DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           DMY++CG++ +A  VF    +K  + ++TS I GLAM+GH  EA  +F  M   G+ PD 
Sbjct: 479 DMYSRCGNVPMARLVFEGMQEKRSIVSWTSMIAGLAMHGHGEEAIRIFNEMTESGVMPDE 538

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
           IS+I++L ACSH G +++G  YF  M  V+ I+P ++HY CMVDL GR+G L++A +FI 
Sbjct: 539 ISFISLLYACSHAGLIKEGEGYFSKMKRVYHIEPAVEHYGCMVDLYGRSGKLQKAYSFIC 598

Query: 301 SMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGEN 360
            MP+ P  ++W TLLGAC  H N E+ +++   L E D N+ G  +LLSN+Y    K ++
Sbjct: 599 QMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNVYATAGKWKD 658

Query: 361 AEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKN-YG 419
              +RK+M  ++IK+    SL+E+   +++F A ++  E   E ++  +EI+ ++++  G
Sbjct: 659 VASIRKSMIVQRIKKITAWSLVEVGKTMYKFTACEKKKEIDIEAHEKLKEIILRLRDEAG 718

Query: 420 YNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMK 479
           Y  E  S ++D+EEEEKE  +  HSEKLALAF L     G+ IRIVKN+RIC DCH+ MK
Sbjct: 719 YAPEVASALYDVEEEEKEDQVSKHSEKLALAFALARLPKGANIRIVKNLRICRDCHAVMK 778

Query: 480 LVSKVFKRKISIRDRKHYHHFEDGSCSCLEY 510
           L S+V+  +I IRDR  +H F+DGSCSC +Y
Sbjct: 779 LTSRVYGVEIVIRDRNRFHSFKDGSCSCGDY 809



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 58/309 (18%), Positives = 108/309 (34%), Gaps = 64/309 (20%)

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD-LEPNSAILVSLLSACA 150
           A R+    P+     +  L+ G++++  P  ++A+F EM     + P+S     ++ A A
Sbjct: 225 ARRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFIFPDSFSFAFVVKAAA 284

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
              +L  G  ++    K  +     +   LI MY +CG +  A +VF      ++ A+ +
Sbjct: 285 NFRSLRTGFQMHCQALKHGLDSHLFVATTLIGMYGECGCVGFARKVFDEMPQPNLVAWNA 344

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISP---------------------------DSISY 243
            +           A E+F+ M  +  +                            D +S+
Sbjct: 345 VVTACFRGNDVSGAREIFDKMLVRNHTSWNVMLAGYIKAGELECAKRIFSEMPHRDDVSW 404

Query: 244 IAVLSACSHLGWVEKGFYYFHSMF----------------------------DVHGIKPE 275
             ++   SH G   + F YF  +                              +HG   E
Sbjct: 405 STMIVGFSHNGSFNESFSYFRELLRAEMRPNEVSLTGVLSACSQSGAFEFGKTLHGFV-E 463

Query: 276 LDHYA-------CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQ 328
              Y+        ++D+  R G +  A      M  K   V W +++    +H + E   
Sbjct: 464 KSGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRSIVSWTSMIAGLAMHGHGEEAI 523

Query: 329 RIGNMLIES 337
           RI N + ES
Sbjct: 524 RIFNEMTES 532


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/553 (39%), Positives = 332/553 (60%), Gaps = 43/553 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVC---GRVRDARWVFDESDDLDVVSWNSMINGYVRNGEI 58
           V++   A DV V  SL+  Y+ C   G V D+R VF++  + +V+SW ++I  Y ++GE 
Sbjct: 77  VIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGEC 136

Query: 59  -LEGLKLFDKMP----QRNDVSWNSIL---GGL--------------------------- 83
             E ++LF KM     + N  S++S+L   G L                           
Sbjct: 137 DKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNS 196

Query: 84  -----VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPN 138
                 R G ++DA + F+ + +++LVS+  ++ G+A+N + +EA  LF E+    +  +
Sbjct: 197 LISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGIS 256

Query: 139 SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH 198
           +    SLLS  A +GA+  G  ++  + K   K +  +C ALI MY++CG+I+ A QVF+
Sbjct: 257 AFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFN 316

Query: 199 SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEK 258
              D++V ++TS I G A +G +  A E+F  M   G  P+ I+Y+AVLSACSH+G + +
Sbjct: 317 EMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISE 376

Query: 259 GFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
           G  +F+SM+  HGI P ++HYACMVDLLGR+GLL EA  FI SMP+  D ++W TLLGAC
Sbjct: 377 GQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGAC 436

Query: 319 RVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPG 378
           RVH N E+G+    M++E + +    YILLSN++    + ++  ++RK+M++R + +  G
Sbjct: 437 RVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAG 496

Query: 379 CSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKET 438
           CS IE++  VH F  G+ SH +  +IYQ  +++  KIK  GY  +T  V+ DIEEE+KE 
Sbjct: 497 CSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQ 556

Query: 439 VIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYH 498
            +  HSEK+A+AFGLI T     IRI KN+R+C DCH+A+K +S    R+I +RD   +H
Sbjct: 557 FLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFH 616

Query: 499 HFEDGSCSCLEYW 511
           H ++G CSC +YW
Sbjct: 617 HIKNGVCSCNDYW 629



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 101/166 (60%), Gaps = 4/166 (2%)

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           A +VF++MP+R+LV+W ++I+ FAQ G  ++A+ LF +M+     P+     S+LSAC +
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC---GSIDLAMQVFHSYGDKDVSAY 208
           LG L  G  ++S + +  + LD  +  +L+DMYAKC   GS+D + +VF    + +V ++
Sbjct: 64  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 123

Query: 209 TSAIFGLAMNGH-SIEAFELFENMKSKGISPDSISYIAVLSACSHL 253
           T+ I   A +G    EA ELF  M S  I P+  S+ +VL AC +L
Sbjct: 124 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNL 169


>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
          Length = 983

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 204/486 (41%), Positives = 293/486 (60%), Gaps = 33/486 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYS-VCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
            VK   A  + V N+LI+ ++ + GR+ DA  +   +  +D  ++N++I  Y R G    
Sbjct: 236 AVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASVDASTFNTLITAYARAGR--- 292

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
                                       V DA  +F++MP R+ VSW  +++G+ Q G  
Sbjct: 293 ----------------------------VTDARALFDEMPARNAVSWSAMVNGYVQAGDG 324

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
           +EAL LF  MQ+  + P+  +LV +L+ACAQLG L+ G WV+ Y++   I++   L  AL
Sbjct: 325 REALGLFARMQADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTAL 384

Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           +DMYAKCG + LAM+VF    +K+V A+T+ I GLAM+G   EA ELF  M+  G+ PD 
Sbjct: 385 VDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDD 444

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
           I++I  L AC+H G V+KG   F SM   +GIKP+++HY CMVDLL R GLL EA   + 
Sbjct: 445 IAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVE 504

Query: 301 SMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGEN 360
            MPMKPD +IWG L+  CR H+N E+ + +    IE + +  G Y+LL NIY  + +  +
Sbjct: 505 KMPMKPDALIWGALMAGCRFHKNVELAEYVVKHWIELEPDKSGAYVLLGNIYAASGRHAS 564

Query: 361 AEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIK-NYG 419
           A E+R  MR++ + + PGCS +E+ GV+H+F+ GD SH   +EI   W+EI  +I+   G
Sbjct: 565 AREIRHLMREKGVDKTPGCSTVEIKGVIHQFIVGDLSHPFIEEILSKWDEIDSRIRLEEG 624

Query: 420 YNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMK 479
           Y  + + V+ DIEEEEKE  +  HSEK+A+AF LI T     IRIVKN+R+C DCH   K
Sbjct: 625 YVPDKKEVLLDIEEEEKENALSRHSEKMAIAFALINTSDDMPIRIVKNLRVCHDCHHVTK 684

Query: 480 LVSKVF 485
           L+SKVF
Sbjct: 685 LISKVF 690



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 124/290 (42%), Gaps = 74/290 (25%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++++ + + D    N+LI  Y+  GRV DAR +FDE    + VSW++M+NGYV+ G+  E
Sbjct: 267 VLLRTAASVDASTFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGRE 326

Query: 61  GLKLFDKMP----QRNDVSWNSILGGLVRFGSVDD------------------------- 91
            L LF +M     + +D     +L    + G ++                          
Sbjct: 327 ALGLFARMQADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVD 386

Query: 92  ----------ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
                     A  VF  M ++++++W  +I G A +GR  EAL LF +M+ L ++P+   
Sbjct: 387 MYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIA 446

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
            +  L AC   G +D G  ++  + +K                               YG
Sbjct: 447 FIGALCACTHTGLVDKGRELFDSMVRK-------------------------------YG 475

Query: 202 DKD-VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250
            K  +  Y   +  LA NG   EA E+ E M  K   PD++ + A+++ C
Sbjct: 476 IKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMK---PDALIWGALMAGC 522



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 103/269 (38%), Gaps = 40/269 (14%)

Query: 90  DDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
           D A  V +   +RS      LI   A + RP  AL L+  +      P    L SLL + 
Sbjct: 157 DQAALVTSGWLRRSADLHNALIRALAGSARPHLALPLYAHLLRAGHHPTPHTLPSLLKSL 216

Query: 150 AQLGALDYGNWVYSYIQKKCIKL------------------------------------D 173
           A   A+     +   +    +KL                                    D
Sbjct: 217 ALSPAVPGARGLALAVHAHAVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASVD 276

Query: 174 SILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKS 233
           +     LI  YA+ G +  A  +F     ++  ++++ + G    G   EA  LF  M++
Sbjct: 277 ASTFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQA 336

Query: 234 KGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLE 293
            G+ PD    + VL+AC+ LG +E+G  + H     + I+  +     +VD+  + G ++
Sbjct: 337 DGVRPDDTVLVGVLAACAQLGVLEQG-KWVHGYLKANNIRITVFLGTALVDMYAKCGEMQ 395

Query: 294 EAENFIASMPMKPDNVI-WGTLLGACRVH 321
            A        MK  NV+ W T++    +H
Sbjct: 396 LAMEVFKV--MKEKNVLAWTTMIKGLAMH 422


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 197/506 (38%), Positives = 314/506 (62%), Gaps = 32/506 (6%)

Query: 7   FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFD 66
           F  D+FV ++L+  YS CG +RDAR                                LFD
Sbjct: 107 FEPDLFVSSALVDMYSKCGELRDAR-------------------------------TLFD 135

Query: 67  KMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALAL 126
           ++  RN VSW S++ G V+      A RVF+ M +R ++SW  +I+ +AQNG   E++ +
Sbjct: 136 EISHRNIVSWTSMITGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEI 195

Query: 127 FREM-QSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYA 185
           F  M +  ++  N+  L ++L ACA  G+   G  ++  + K  ++ +  +  ++IDMY 
Sbjct: 196 FHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYC 255

Query: 186 KCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIA 245
           KCG +++A + F    +K+V ++++ + G  M+GH+ EA E+F  M   G+ P+ I++++
Sbjct: 256 KCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVS 315

Query: 246 VLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMK 305
           VL+ACSH G +E+G+++F +M     ++P ++HY CMVDLLGRAG L+EA + I  M ++
Sbjct: 316 VLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLR 375

Query: 306 PDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVR 365
           PD V+WG LLGACR+H+N ++G+     L E D  + G Y+LLSNIY +  + E+ E +R
Sbjct: 376 PDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMR 435

Query: 366 KTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETR 425
             M+   + + PG SL+++ G VH FL GDR H + ++IY++ E++  K++  GY  +  
Sbjct: 436 ILMKNSGLVKPPGFSLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDMT 495

Query: 426 SVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVF 485
           SV+ D+  EEKE V+  HSEKLA+AFG++ T PG+ I I+KN+R+C DCH+A+K +SK+ 
Sbjct: 496 SVLHDVGHEEKEMVLRVHSEKLAVAFGIMNTVPGTTIHIIKNLRVCGDCHTAIKFISKIV 555

Query: 486 KRKISIRDRKHYHHFEDGSCSCLEYW 511
            R+I +RD K +HHF DG CSC +YW
Sbjct: 556 DREIVVRDSKRFHHFRDGLCSCGDYW 581



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 122/275 (44%), Gaps = 37/275 (13%)

Query: 85  RFGSVDDACRVFNQ-MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
           R+ +  +   +FN+ + K ++ SW  +I+  A++G   EAL  F  M+ L L+PN +   
Sbjct: 21  RYSNNPNLTTLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFP 80

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSI------------- 190
             + +C+ L  L  G   +        + D  + +AL+DMY+KCG +             
Sbjct: 81  CAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHR 140

Query: 191 ------------------DLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMK 232
                               A++VF    ++DV ++ S I   A NG S E+ E+F  M 
Sbjct: 141 NIVSWTSMITGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMV 200

Query: 233 SKG-ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGL 291
             G I+ ++++  AVL AC+H G    G    H      G++  +     ++D+  + G 
Sbjct: 201 KDGEINYNAVTLSAVLLACAHSGSQRLG-KCIHDQVIKMGLESNVFVGTSIIDMYCKCGK 259

Query: 292 LEEAENFIASMPMKPDNV-IWGTLLGACRVHRNAE 325
           +E A    A   M+  NV  W  ++    +H +A+
Sbjct: 260 VEMARK--AFDRMREKNVKSWSAMVAGYGMHGHAK 292



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 90/199 (45%), Gaps = 19/199 (9%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K     +VFV  S+I  Y  CG+V  AR  FD   + +V SW++M+ GY  +G   E 
Sbjct: 235 VIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEA 294

Query: 62  LKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLIS 112
           L++F +M     + N +++ S+L      G +++    F  M     V      +  ++ 
Sbjct: 295 LEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVD 354

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKL 172
              + G  KEA  L + M+   L P+  +  +LL AC     +D G        +K  +L
Sbjct: 355 LLGRAGYLKEAFDLIKGMK---LRPDFVVWGALLGACRMHKNVDLGE----ISARKLFEL 407

Query: 173 DSILCA---ALIDMYAKCG 188
           D   C     L ++YA  G
Sbjct: 408 DPKNCGYYVLLSNIYADAG 426


>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 462

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 197/436 (45%), Positives = 300/436 (68%), Gaps = 1/436 (0%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136
           NS+L      G V  A +VF++MP++ LV+W  +I+GFA+NG+P+EALAL+ EM S  ++
Sbjct: 27  NSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIK 86

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
           P+   +VSLLSACA++GAL  G  V+ Y+ K  +  +      L+D+YA+CG ++ A  +
Sbjct: 87  PDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTL 146

Query: 197 FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKS-KGISPDSISYIAVLSACSHLGW 255
           F    DK+  ++TS I GLA+NG   EA ELF+ M+S +G+ P  I+++ +L ACSH G 
Sbjct: 147 FDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGM 206

Query: 256 VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
           V++GF YF  M + + I+P ++H+ CMVDLL RAG +++A  +I SMPM+P+ VIW TLL
Sbjct: 207 VKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLL 266

Query: 316 GACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKR 375
           GAC VH ++++ +     +++ + NH G Y+LLSN+Y    +  + +++RK M +  +K+
Sbjct: 267 GACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKK 326

Query: 376 APGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEE 435
            PG SL+E+   VHEFL GD+SH ++  IY   +E+  ++++ GY  +  +V  D+EEEE
Sbjct: 327 VPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEE 386

Query: 436 KETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRK 495
           KE  + YHSEK+A+AF LI T   S I +VKN+R+C+DCH A+KLVSKV+ R+I +RDR 
Sbjct: 387 KENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRS 446

Query: 496 HYHHFEDGSCSCLEYW 511
            +HHF++GSCSC +YW
Sbjct: 447 RFHHFKNGSCSCQDYW 462



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 116/242 (47%), Gaps = 45/242 (18%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V+++ F   ++V+NSL+  Y+ CG V  A  VFD+  + D+V+WNS+ING+  NG+  E
Sbjct: 13  VVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEE 72

Query: 61  GLKLFDKMPQ---------------------------------------RNDVSWNSILG 81
            L L+ +M                                         RN  S N +L 
Sbjct: 73  ALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLD 132

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD-LEPNSA 140
              R G V++A  +F++M  ++ VSW  LI G A NG  KEA+ LF+ M+S + L P   
Sbjct: 133 LYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEI 192

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKC---IKLDSILCAALIDMYAKCGSIDLAMQVF 197
             V +L AC+  G +  G   +  ++++     +++   C  ++D+ A+ G +  A +  
Sbjct: 193 TFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGC--MVDLLARAGQVKKAYEYI 250

Query: 198 HS 199
            S
Sbjct: 251 KS 252


>gi|357114903|ref|XP_003559233.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 611

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 192/425 (45%), Positives = 289/425 (68%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           G + DA  VF +MP+ S V+W  +I G+ + G   +A+ LFR MQ   + P+   ++ +L
Sbjct: 187 GFLGDARNVFERMPRESAVTWSAMIGGYVRAGLSSDAVVLFRGMQVSGVRPDEVTVIGVL 246

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
           +A A LGAL+   WV  +++++ I     LC ALID  AKCG +D A+ VF    ++ V 
Sbjct: 247 AAAADLGALELTRWVGRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMEERTVV 306

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
           ++TS I  LAM G   EA  +FE MK+ G+ PD +++I VL+ACSH G V++G  YF SM
Sbjct: 307 SWTSVIDALAMEGRGKEAVGVFEEMKAVGVLPDDVAFIGVLTACSHAGMVDEGRGYFDSM 366

Query: 267 FDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEM 326
              +GI+P+++HY CMVD+ GRAG++E+   F+ +MPMKP+ +IW TL+ ACR H   E+
Sbjct: 367 KTEYGIEPKIEHYGCMVDMFGRAGMVEQGLEFVRAMPMKPNPIIWRTLVAACRAHGRLEL 426

Query: 327 GQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDG 386
           G+ I   L+     H+  Y++LSN+Y  T + +   E+R+ M KR IK+ PGCSL+ELDG
Sbjct: 427 GESITRNLLNEFPAHEANYVMLSNVYALTQRWKEKSEIRREMSKRGIKKVPGCSLVELDG 486

Query: 387 VVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEK 446
            VHEF+AGD SH + +EIY+  EE+ ++++  G+   T  V+ D++EE+KE  + +HSEK
Sbjct: 487 EVHEFIAGDESHPQYKEIYRMVEEMSRELRRIGHIAATSEVLLDLDEEDKEGALQWHSEK 546

Query: 447 LALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCS 506
           LA+AF L+ T PG+ +R+VKN+R+CSDCH+A+K +S+V+ R+I +RDR  +H F+DGSCS
Sbjct: 547 LAIAFVLLRTPPGTQVRVVKNLRVCSDCHAAIKCISQVYNREIVVRDRSRFHRFKDGSCS 606

Query: 507 CLEYW 511
           C ++W
Sbjct: 607 CKDFW 611



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 110/237 (46%), Gaps = 46/237 (19%)

Query: 3   VKNSFAYDVFVKNSLIQFYSV--CGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +K  FA D +V N+LI  YS    G + DAR VF+       V+W++MI GYVR G   +
Sbjct: 163 LKFGFAADHYVSNTLIHMYSCFGAGFLGDARNVFERMPRESAVTWSAMIGGYVRAGLSSD 222

Query: 61  GLKLFDKM------PQRNDV----------------SW-----------------NSILG 81
            + LF  M      P    V                 W                 N+++ 
Sbjct: 223 AVVLFRGMQVSGVRPDEVTVIGVLAAAADLGALELTRWVGRFVEREGIGKSVTLCNALID 282

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
            L + G VD A  VF  M +R++VSW  +I   A  GR KEA+ +F EM+++ + P+   
Sbjct: 283 TLAKCGDVDGAVAVFEGMEERTVVSWTSVIDALAMEGRGKEAVGVFEEMKAVGVLPDDVA 342

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKC---IKLDSILCAALIDMYAKCGSIDLAMQ 195
            + +L+AC+  G +D G   +  ++ +     K++   C  ++DM+ + G ++  ++
Sbjct: 343 FIGVLTACSHAGMVDEGRGYFDSMKTEYGIEPKIEHYGC--MVDMFGRAGMVEQGLE 397



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 16/171 (9%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V +      V + N+LI   + CG V  A  VF+  ++  VVSW S+I+     G   E 
Sbjct: 265 VEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMEERTVVSWTSVIDALAMEGRGKEA 324

Query: 62  LKLFDKMPQ----RNDVSWNSILGGLVRFGSVDDACRVFNQM-------PKRSLVSWVVL 110
           + +F++M       +DV++  +L      G VD+    F+ M       PK  +  +  +
Sbjct: 325 VGVFEEMKAVGVLPDDVAFIGVLTACSHAGMVDEGRGYFDSMKTEYGIEPK--IEHYGCM 382

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161
           +  F + G  ++ L   R M    ++PN  I  +L++AC   G L+ G  +
Sbjct: 383 VDMFGRAGMVEQGLEFVRAMP---MKPNPIIWRTLVAACRAHGRLELGESI 430


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/553 (39%), Positives = 332/553 (60%), Gaps = 43/553 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVC---GRVRDARWVFDESDDLDVVSWNSMINGYVRNGEI 58
           V++   A DV V  SL+  Y+ C   G V D+R VF++  + +V+SW ++I  Y ++GE 
Sbjct: 82  VIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGEC 141

Query: 59  -LEGLKLFDKMP----QRNDVSWNSIL---GGL--------------------------- 83
             E ++LF KM     + N  S++S+L   G L                           
Sbjct: 142 DKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNS 201

Query: 84  -----VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPN 138
                 R G ++DA + F+ + +++LVS+  ++ G+A+N + +EA  LF E+    +  +
Sbjct: 202 LISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGIS 261

Query: 139 SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH 198
           +    SLLS  A +GA+  G  ++  + K   K +  +C ALI MY++CG+I+ A QVF+
Sbjct: 262 AFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFN 321

Query: 199 SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEK 258
              D++V ++TS I G A +G +  A E+F  M   G  P+ I+Y+AVLSACSH+G + +
Sbjct: 322 EMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISE 381

Query: 259 GFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
           G  +F+SM+  HGI P ++HYACMVDLLGR+GLL EA  FI SMP+  D ++W TLLGAC
Sbjct: 382 GQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGAC 441

Query: 319 RVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPG 378
           RVH N E+G+    M++E + +    YILLSN++    + ++  ++RK+M++R + +  G
Sbjct: 442 RVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAG 501

Query: 379 CSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKET 438
           CS IE++  VH F  G+ SH +  +IYQ  +++  KIK  GY  +T  V+ DIEEE+KE 
Sbjct: 502 CSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQ 561

Query: 439 VIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYH 498
            +  HSEK+A+AFGLI T     IRI KN+R+C DCH+A+K +S    R+I +RD   +H
Sbjct: 562 FLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFH 621

Query: 499 HFEDGSCSCLEYW 511
           H ++G CSC +YW
Sbjct: 622 HIKNGVCSCNDYW 634



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 101/166 (60%), Gaps = 4/166 (2%)

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           A +VF++MP+R+LV+W ++I+ FAQ G  ++A+ LF +M+     P+     S+LSAC +
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC---GSIDLAMQVFHSYGDKDVSAY 208
           LG L  G  ++S + +  + LD  +  +L+DMYAKC   GS+D + +VF    + +V ++
Sbjct: 69  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 128

Query: 209 TSAIFGLAMNGH-SIEAFELFENMKSKGISPDSISYIAVLSACSHL 253
           T+ I   A +G    EA ELF  M S  I P+  S+ +VL AC +L
Sbjct: 129 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNL 174


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/555 (38%), Positives = 330/555 (59%), Gaps = 50/555 (9%)

Query: 7   FAY--DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKL 64
           F Y  D+FV ++LI  YS CG++ DAR VFDE    D+VSW SMI GY  NG  L+ + L
Sbjct: 105 FGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMIRGYDLNGNALDAVSL 164

Query: 65  F-DKMPQRND---------VSWNSILGGLVRF---------------------------- 86
           F D +   ND         +   S++    R                             
Sbjct: 165 FKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTL 224

Query: 87  ---------GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM-QSLDLE 136
                    G V  A ++F+Q+  +  VS+  ++S +AQ+G   EA  +FR + ++  + 
Sbjct: 225 LDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVT 284

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
            N+  L ++L A +  GAL  G  ++  + +  ++ D I+  ++IDMY KCG ++ A + 
Sbjct: 285 FNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKA 344

Query: 197 FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWV 256
           F    +K+V ++T+ I G  M+GH+ +A ELF  M   G+ P+ I++++VL+ACSH G  
Sbjct: 345 FDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLH 404

Query: 257 EKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLG 316
            +G+ +F++M    G++P L+HY CMVDLLGRAG L++A + I  M MKPD++IW +LL 
Sbjct: 405 VEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLA 464

Query: 317 ACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRA 376
           ACR+H+N E+ +     L E D ++ G Y+LLS+IY +  + ++ E VR  M+ R + + 
Sbjct: 465 ACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKP 524

Query: 377 PGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEK 436
           PG SL+EL+G VH FL GD  H + ++IY+F  E+ +K+   GY   T SV  D++EEEK
Sbjct: 525 PGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEK 584

Query: 437 ETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKH 496
           E  +  HSEKLA+AFG++ T PGS + +VKN+R+CSDCH+ +KL+SK+  R+  +RD K 
Sbjct: 585 EMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKR 644

Query: 497 YHHFEDGSCSCLEYW 511
           +HHF+DG CSC +YW
Sbjct: 645 FHHFKDGGCSCGDYW 659



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 86/166 (51%), Gaps = 7/166 (4%)

Query: 95  VFNQ-MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153
           +FN+ + K  + SW  +I+  A++G   EAL  F  M+ L L P  +     + AC+ L 
Sbjct: 31  LFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLF 90

Query: 154 ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIF 213
            +  G   +        + D  + +ALI MY+ CG ++ A +VF     +D+ ++TS I 
Sbjct: 91  DIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMIR 150

Query: 214 GLAMNGHSIEAFELF------ENMKSKGISPDSISYIAVLSACSHL 253
           G  +NG++++A  LF      EN     +  DS+  ++V+SACS +
Sbjct: 151 GYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRV 196



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 76/157 (48%), Gaps = 12/157 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V++     DV V  S+I  Y  CGRV  AR  FD   + +V SW +MI GY  +G   + 
Sbjct: 313 VIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKA 372

Query: 62  LKLFDKM----PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLIS 112
           L+LF  M     + N +++ S+L      G   +  R FN M  R      L  +  ++ 
Sbjct: 373 LELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVD 432

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
              + G  ++A  L + M+   ++P+S I  SLL+AC
Sbjct: 433 LLGRAGFLQKAYDLIQRMK---MKPDSIIWSSLLAAC 466


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/552 (38%), Positives = 319/552 (57%), Gaps = 43/552 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVC---GRVRDARWVFDESDDLDVVSWNSMINGYVRNG--- 56
           +++    D  V   LI  Y+ C   G +  AR +FD+  D +V SW +MI GYV+ G   
Sbjct: 298 IRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYD 357

Query: 57  ----EILEGLKLFDKMPQRNDVS---------------------------------WNSI 79
               ++  G+ L   +P     S                                  NS+
Sbjct: 358 EEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSL 417

Query: 80  LGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS 139
           +    R G +DDA + F+ + +++L+S+  +I  +A+N   +EAL LF E++   +  ++
Sbjct: 418 ISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASA 477

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
               SLLS  A +G +  G  +++ + K  +KL+  +C ALI MY++CG+I+ A QVF  
Sbjct: 478 FTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFED 537

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
             D++V ++TS I G A +G + +A ELF  M  +G+ P+ ++YIAVLSACSH+G V +G
Sbjct: 538 MEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEG 597

Query: 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACR 319
           + +F SM+  HG+ P ++HYAC+VD+LGR+G L EA  FI SMP K D ++W T LGACR
Sbjct: 598 WKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACR 657

Query: 320 VHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGC 379
           VH N E+G+    M+IE + +    YILLSN+Y    K +    +RK M+++ + +  GC
Sbjct: 658 VHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASISKWDEVSNIRKAMKEKXLIKEAGC 717

Query: 380 SLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETV 439
           S +E++  VH+F  GD SH K  EIY   + +  KIK  GY      V+ D+EEE+KE +
Sbjct: 718 SWVEVENKVHKFYVGDTSHPKAAEIYDELQNLSVKIKKLGYVPNLDFVLHDVEEEQKEKL 777

Query: 440 IGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHH 499
           +  HSEK+A+AFGLI T     IR+ KN+RIC DCHSA+K +S    R+I +RD   +HH
Sbjct: 778 LFQHSEKIAVAFGLISTSKMKPIRVFKNLRICGDCHSAIKYISMATGREIIVRDANRFHH 837

Query: 500 FEDGSCSCLEYW 511
            +DG CSC EYW
Sbjct: 838 IKDGRCSCNEYW 849



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 154/344 (44%), Gaps = 55/344 (15%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFD-ESDDLDVVSWNSMINGYVRNGEILE 60
           + ++    D    NSLI  YS CG+   A  +F       D++SW++M++ +  N     
Sbjct: 92  LTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFR 151

Query: 61  GLKLFDKMPQR----NDVSW----------------NSILGGLVRFGSVD-DAC------ 93
            L  F  M +     N+  +                +SI G +++ G +  D C      
Sbjct: 152 ALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLI 211

Query: 94  --------------RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS 139
                         +VF +MP+R+ V+W ++I+   Q G   EA+ LF +M     EP+ 
Sbjct: 212 DMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDR 271

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC---GSIDLAMQV 196
             L  ++SACA +  L  G  ++S   +  + LD  +   LI+MYAKC   GS+  A ++
Sbjct: 272 FTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKI 331

Query: 197 FHSYGDKDVSAYTSAIFG-LAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGW 255
           F    D +V ++T+ I G +   G+  EA +LF  M    + P+  ++ + L AC++L  
Sbjct: 332 FDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAA 391

Query: 256 VEKGFYYFHSMFDVHGIKPELDHYAC----MVDLLGRAGLLEEA 295
           +  G   F      H +K       C    ++ +  R+G +++A
Sbjct: 392 LRIGEQVF-----THAVKLGFSSVNCVANSLISMYARSGRIDDA 430



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 106/229 (46%), Gaps = 4/229 (1%)

Query: 63  KLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQM-PKRSLVSWVVLISGFAQNGRPK 121
           KL     Q + V+ NS++    + G  + A  +F  M   R L+SW  ++S FA N    
Sbjct: 91  KLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGF 150

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC-IKLDSILCAAL 180
            AL  F +M      PN     +   AC+    +  G+ ++ ++ K   ++ D  +   L
Sbjct: 151 RALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGL 210

Query: 181 IDMYAKC-GSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
           IDM+ K  G +  A +VF    +++   +T  I  L   G++ EA +LF +M   G  PD
Sbjct: 211 IDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPD 270

Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGR 288
             +   V+SAC+++  +  G    HS    HG+  +     C++++  +
Sbjct: 271 RFTLSGVISACANMELLLLG-QQLHSQAIRHGLTLDRCVGCCLINMYAK 318



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 86/168 (51%), Gaps = 16/168 (9%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K+    +  V N+LI  YS CG +  A  VF++ +D +V+SW S+I G+ ++G   + 
Sbjct: 503 VIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQA 562

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQM-------PKRSLVSWVVL 110
           L+LF KM +     N+V++ ++L      G V++  + F  M       P+    + +V 
Sbjct: 563 LELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVD 622

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
           I G  ++G   EA+     + S+  + ++ +  + L AC   G L+ G
Sbjct: 623 ILG--RSGSLSEAIQF---INSMPYKADALVWRTFLGACRVHGNLELG 665



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 89/203 (43%), Gaps = 5/203 (2%)

Query: 116 QNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI 175
            NGR  +A++    M      P+       L  C +  + D G  V+  + +  ++LDS+
Sbjct: 43  NNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSV 102

Query: 176 LCAALIDMYAKCGSIDLAMQVFHSYG-DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK 234
              +LI +Y+KCG  + A  +F   G  +D+ ++++ +   A N     A   F +M   
Sbjct: 103 TLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIEN 162

Query: 235 GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLL--GRAGLL 292
           G  P+   + A   ACS   +V  G   F  +     ++ ++     ++D+   GR  L+
Sbjct: 163 GYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLV 222

Query: 293 EEAENFIASMPMKPDNVIWGTLL 315
              + F   MP + + V W  ++
Sbjct: 223 SAFKVF-EKMPER-NAVTWTLMI 243


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 224/547 (40%), Positives = 315/547 (57%), Gaps = 40/547 (7%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           ++  A D F+ NSLI  Y  CG V DAR VFD+    DVVSW  +I GY +N    E + 
Sbjct: 88  RSCLAGDAFLLNSLIHMYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIG 147

Query: 64  LFDKMPQR----NDVSWNSIL------GG-----------------------------LV 84
           L   M +     N  ++ S+L      GG                               
Sbjct: 148 LLPDMLRARFRPNGFTFTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYA 207

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
           R   +D A  VF+++  ++ VSW  LI+GFA+    +  L  F EMQ            S
Sbjct: 208 RCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSS 267

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           + SA A++GAL+ G WV++++ K   KL + +   ++ MYAK GS+  A +VF     +D
Sbjct: 268 MFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRD 327

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           +  + + +  LA  G   EA   FE ++  GI  + I++++VL+ACSH G V++G +YF 
Sbjct: 328 LVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFD 387

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
            M D + ++PE+DHY   VDLLGRAGLL+EA  F+  MPM+P   +WG LLGACR+H+NA
Sbjct: 388 MMKD-YNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNA 446

Query: 325 EMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIEL 384
           +MGQ   + + E D +  G  +LL NIY  T K  +A  VRK M+   +K+ P CS +++
Sbjct: 447 KMGQYAADHVFELDPDDTGPPVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQI 506

Query: 385 DGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHS 444
           +  VH F+A D +H K+ +IY+ WEEI  +IK  GY   T  V+  I E+E+ET + YHS
Sbjct: 507 ENSVHMFVADDDTHPKSGDIYRMWEEINMRIKKAGYVPNTAHVLLHINEQERETKLKYHS 566

Query: 445 EKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGS 504
           EK+ALAF LI    G+ IRI+KNIRIC DCHSA K VSKVFKR+I +RD   +HHF +GS
Sbjct: 567 EKIALAFALINMPAGASIRIMKNIRICGDCHSAFKYVSKVFKREIVVRDTNRFHHFSEGS 626

Query: 505 CSCLEYW 511
           CSC +YW
Sbjct: 627 CSCGDYW 633



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 115/254 (45%), Gaps = 41/254 (16%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + VK ++  DV+V ++L+  Y+ C ++  A  VFD     + VSWN++I G+ R  +   
Sbjct: 186 LAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKADGET 245

Query: 61  GLKLFDKMPQRNDVS-----------------------W-----------------NSIL 80
            L  F +M QRN                          W                 N++L
Sbjct: 246 TLMKFAEM-QRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTML 304

Query: 81  GGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
           G   + GS+ DA +VF++M KR LV+W  +++  AQ G  KEA+A F E++   ++ N  
Sbjct: 305 GMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQI 364

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
             +S+L+AC+  G +  G   +  ++   ++ +     + +D+  + G +  A+      
Sbjct: 365 TFLSVLTACSHGGLVKEGKHYFDMMKDYNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKM 424

Query: 201 GDKDVSAYTSAIFG 214
             +  +A   A+ G
Sbjct: 425 PMEPTAAVWGALLG 438



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 1/155 (0%)

Query: 100 PKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGN 159
           P  S     V IS F  +      L     + + +L P   +  S+++ACAQ   L    
Sbjct: 22  PYTSAAHRAVPIS-FPSSPASSTGLRELDLLHAGELAPTPRLYHSIIAACAQFKNLAGAR 80

Query: 160 WVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNG 219
            +++++ + C+  D+ L  +LI MY KCG++  A  VF     +DV ++T  I G A N 
Sbjct: 81  AIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNY 140

Query: 220 HSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
              EA  L  +M      P+  ++ ++L A    G
Sbjct: 141 MPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACG 175



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 81/158 (51%), Gaps = 15/158 (9%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K+      FV N+++  Y+  G + DAR VFD  D  D+V+WN+M+    + G   E 
Sbjct: 288 LIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEA 347

Query: 62  LKLFDKMP----QRNDVSWNSIL-----GGLVRFGS-VDDACRVFNQMPKRSLVSWVVLI 111
           +  F+++     Q N +++ S+L     GGLV+ G    D  + +N  P+  +  +V  +
Sbjct: 348 VAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMMKDYNVQPE--IDHYVSFV 405

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
               + G  KEAL    +M    +EP +A+  +LL AC
Sbjct: 406 DLLGRAGLLKEALIFVFKMP---MEPTAAVWGALLGAC 440


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 200/469 (42%), Positives = 305/469 (65%), Gaps = 4/469 (0%)

Query: 47  SMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS 106
           S+I+ YV+ G I +  KLFDKM  R+  SWN+++ G ++ G +  A  +F +M  R++VS
Sbjct: 221 SLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVS 280

Query: 107 WVVLISGFAQNGRPKEALALFREM--QSLDLEPNSAILVSLLSACAQLGALDYGNWVYSY 164
           W  +ISG+ QNG  ++AL LF EM     +++PN   +VS+L ACAQ  AL+ G  ++ +
Sbjct: 281 WTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDF 340

Query: 165 IQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH--SYGDKDVSAYTSAIFGLAMNGHSI 222
                + L+S +  AL  MYAKC S+  A   F   +   K++ A+ + I   A +G  +
Sbjct: 341 ANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGV 400

Query: 223 EAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACM 282
           EA  +FENM   G+ PD+++++ +LS CSH G ++ G  +F+ M  +H ++P ++HYAC+
Sbjct: 401 EAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACV 460

Query: 283 VDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD 342
           VDLLGRAG L EA+  I+ MPM+    +WG LL ACR HRN E+ +     L   + ++ 
Sbjct: 461 VDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNS 520

Query: 343 GRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQ 402
           G Y+LLSN+Y E    E  +++R  ++ + +K++PGCS IE++G  H F+  D+SH + +
Sbjct: 521 GNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAK 580

Query: 403 EIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVI 462
           EIY+F E + +KIK  GY  +T  V+ DI EEEKE  +  HSEKLA+AFGL+ T+PG V+
Sbjct: 581 EIYKFLEALPEKIKMAGYIPDTSFVLHDISEEEKEYNLTTHSEKLAIAFGLLNTRPGVVL 640

Query: 463 RIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           R+ KN+RIC DCH+A K +SK+++R+I +RD   +H F+DGSCSC +YW
Sbjct: 641 RVTKNLRICGDCHAATKFISKIYEREIIVRDLNRFHCFKDGSCSCGDYW 689



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 93/192 (48%), Gaps = 8/192 (4%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEA---LALFREMQSLDLEPNSAILV 143
           G +D A  VF+++   S + +  +I  + ++G        L  +  M  L L  ++  L 
Sbjct: 126 GDLDSAVVVFDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLP 185

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
            +L +CA L  +  G  V+    +  ++ D  + A+LIDMY KCG I  A ++F     +
Sbjct: 186 FVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVR 245

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           D++++ + I G    G    A +LFE M+ + I    +S+ A++S  +  G+ E+    F
Sbjct: 246 DMASWNALIAGYMKEGEIGVAEDLFERMEHRNI----VSWTAMISGYTQNGFAEQALGLF 301

Query: 264 HSMF-DVHGIKP 274
             M  D   +KP
Sbjct: 302 DEMLQDGSEMKP 313


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 221/547 (40%), Positives = 313/547 (57%), Gaps = 40/547 (7%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           ++  A D F+ NSLI  Y  CG V DAR VFD     DVVSW  +I GY +N    E L 
Sbjct: 90  RSRLAGDGFLLNSLIHMYCKCGAVSDARHVFDGIPTRDVVSWTYLITGYAQNDMPAEALG 149

Query: 64  LFDKMPQRN------------------------------DVSWN---------SILGGLV 84
           L   M +                                 V +N         ++L    
Sbjct: 150 LLPDMLRARFRPSGFTFTSFLKAAGACGGRGIGEQMHALAVKYNLDEDVYVGSALLDMYA 209

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
           R   +D A RVF+ +  ++ VSW  LI+GFA+ G  +  L  F EMQ            S
Sbjct: 210 RCQQMDMAIRVFDWLDSKNEVSWNALIAGFARKGDGETTLMKFAEMQRNGFGATHFTYSS 269

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           + SA A++GAL+ G WV++++ K   KL + +   ++ MYAK GS+  A +VF     +D
Sbjct: 270 VFSALARIGALEQGRWVHAHMIKSGQKLTAFVANTILGMYAKSGSMVDARKVFDRVDQRD 329

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           +  + + +   A  G   EA   FE ++  GI  + I++++VL+ACSH G V++G  YF 
Sbjct: 330 LVTWNTMLTAFAQYGLGKEAVAHFEEIRKYGIQLNQITFLSVLTACSHGGLVKEGKQYFD 389

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
            M D + ++PE+DHY   VDLLGRAGLL+EA  F+  MPM+P   +WG LLGACR+H+NA
Sbjct: 390 MMKD-YNVEPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNA 448

Query: 325 EMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIEL 384
           ++GQ   + + E D    G  +LL NIY  T + ++A  VRK M+   +K+ P CS +E+
Sbjct: 449 KIGQYAADHVFELDPEDTGPPVLLYNIYASTGQWDDAARVRKMMKATGVKKEPACSWVEI 508

Query: 385 DGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHS 444
           +  VH F+A D +H K++EIY+ WEE+  +IK  GY   T  V+  I+E+E+ET + YHS
Sbjct: 509 ENSVHMFVADDSTHPKSEEIYRMWEEVNTRIKKAGYVPNTDYVLLHIKEQERETKLQYHS 568

Query: 445 EKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGS 504
           EK+ALAF LI    G+ IRI+KNIRIC DCHSA + VS+VFKR+I +RD   +HHF +GS
Sbjct: 569 EKIALAFALINMPAGATIRIMKNIRICGDCHSAFRYVSEVFKREIVVRDTNRFHHFSNGS 628

Query: 505 CSCLEYW 511
           CSC +YW
Sbjct: 629 CSCGDYW 635



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 117/254 (46%), Gaps = 41/254 (16%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + VK +   DV+V ++L+  Y+ C ++  A  VFD  D  + VSWN++I G+ R G+   
Sbjct: 188 LAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALIAGFARKGDGET 247

Query: 61  GLKLFDKMPQRNDVS-----------------------W-----------------NSIL 80
            L  F +M QRN                          W                 N+IL
Sbjct: 248 TLMKFAEM-QRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLTAFVANTIL 306

Query: 81  GGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
           G   + GS+ DA +VF+++ +R LV+W  +++ FAQ G  KEA+A F E++   ++ N  
Sbjct: 307 GMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKYGIQLNQI 366

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
             +S+L+AC+  G +  G   +  ++   ++ +     + +D+  + G +  A+      
Sbjct: 367 TFLSVLTACSHGGLVKEGKQYFDMMKDYNVEPEIDHYVSFVDLLGRAGLLKEALIFVFKM 426

Query: 201 GDKDVSAYTSAIFG 214
             +  +A   A+ G
Sbjct: 427 PMEPTAAVWGALLG 440



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 100/205 (48%), Gaps = 16/205 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K+      FV N+++  Y+  G + DAR VFD  D  D+V+WN+M+  + + G   E 
Sbjct: 290 MIKSGQKLTAFVANTILGMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEA 349

Query: 62  LKLFDKMP----QRNDVSWNSIL-----GGLVRFG-SVDDACRVFNQMPKRSLVSWVVLI 111
           +  F+++     Q N +++ S+L     GGLV+ G    D  + +N  P+  +  +V  +
Sbjct: 350 VAHFEEIRKYGIQLNQITFLSVLTACSHGGLVKEGKQYFDMMKDYNVEPE--IDHYVSFV 407

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK 171
               + G  KEAL    +M    +EP +A+  +LL AC        G +   ++ +   +
Sbjct: 408 DLLGRAGLLKEALIFVFKMP---MEPTAAVWGALLGACRMHKNAKIGQYAADHVFELDPE 464

Query: 172 LDSILCAALIDMYAKCGSIDLAMQV 196
            D+     L ++YA  G  D A +V
Sbjct: 465 -DTGPPVLLYNIYASTGQWDDAARV 488



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 3/131 (2%)

Query: 127 FREMQSL---DLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDM 183
            RE+  L   +L P   +  S+++ACAQ   L     ++S++ +  +  D  L  +LI M
Sbjct: 47  LRELDLLLTGELAPTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHM 106

Query: 184 YAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISY 243
           Y KCG++  A  VF     +DV ++T  I G A N    EA  L  +M      P   ++
Sbjct: 107 YCKCGAVSDARHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTF 166

Query: 244 IAVLSACSHLG 254
            + L A    G
Sbjct: 167 TSFLKAAGACG 177


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/546 (40%), Positives = 313/546 (57%), Gaps = 40/546 (7%)

Query: 5   NSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKL 64
           + FA  VF+ NSLI  Y  CG V DAR VFD     D+ SW S+I GY +N    E L L
Sbjct: 93  SQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGL 152

Query: 65  FDKMP----QRNDVSWNSILGG-----------------------------------LVR 85
              M     + N  ++ S+L                                       R
Sbjct: 153 LPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYAR 212

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
            G +D A  VF+Q+  ++ VSW  LI+GFA+ G  +  L +F EMQ    E       S+
Sbjct: 213 CGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSV 272

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
            SA A +GAL+ G WV++++ K   +L + +   ++DMYAK GS+  A +VF     KDV
Sbjct: 273 FSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDV 332

Query: 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHS 265
             + S +   A  G   EA   FE M+  G+  + I+++++L+ACSH G V++G  YF  
Sbjct: 333 VTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYF-D 391

Query: 266 MFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAE 325
           M   + ++PE+DHY  +VDLLGRAGLL +A  FI  MPMKP   +WG LLG+CR+H+NA+
Sbjct: 392 MMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAK 451

Query: 326 MGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELD 385
           +GQ   + + E D +  G  +LL NIY  T + + A  VRK M+   +K+ P CS +E++
Sbjct: 452 IGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIE 511

Query: 386 GVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSE 445
             VH F+A D +H +++EIY+ WEEI  +I+  GY   T  V+  ++E+E++  + YHSE
Sbjct: 512 NSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHSE 571

Query: 446 KLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSC 505
           K+ALAF LI    G+ IRI+KNIRIC DCHSA + +SKVFKR+I +RD   +HHF  GSC
Sbjct: 572 KIALAFALINMPLGATIRIMKNIRICGDCHSAFRYISKVFKREIVVRDTNRFHHFSSGSC 631

Query: 506 SCLEYW 511
           SC +YW
Sbjct: 632 SCGDYW 637



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 119/254 (46%), Gaps = 41/254 (16%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + VK  +  DV+V ++L+  Y+ CGR+  A  VFD+ +  + VSWN++I G+ R G+   
Sbjct: 190 LTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGET 249

Query: 61  GLKLFDKMPQRNDV-----------------------SW-----------------NSIL 80
            L +F +M QRN                          W                 N+IL
Sbjct: 250 TLLMFAEM-QRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTIL 308

Query: 81  GGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
               + GS+ DA +VF+++ K+ +V+W  +++ FAQ G  +EA+  F EM+   +  N  
Sbjct: 309 DMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQI 368

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
             +S+L+AC+  G +  G   +  +++  ++ +      ++D+  + G ++ A+      
Sbjct: 369 TFLSILTACSHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKM 428

Query: 201 GDKDVSAYTSAIFG 214
             K  +A   A+ G
Sbjct: 429 PMKPTAAVWGALLG 442



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 96/203 (47%), Gaps = 12/203 (5%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K+      FV N+++  Y+  G + DAR VFD  D  DVV+WNSM+  + + G   E 
Sbjct: 292 MIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREA 351

Query: 62  LKLFDKMPQ----RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS----WVVLISG 113
           +  F++M +     N +++ SIL      G V +  + F+ M + +L      +V ++  
Sbjct: 352 VTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDL 411

Query: 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD 173
             + G   +AL    +M    ++P +A+  +LL +C        G +   ++  +    D
Sbjct: 412 LGRAGLLNDALVFIFKMP---MKPTAAVWGALLGSCRMHKNAKIGQFAADHV-FELDPDD 467

Query: 174 SILCAALIDMYAKCGSIDLAMQV 196
           +     L ++YA  G  D A +V
Sbjct: 468 TGPPVLLYNIYASTGQWDAAARV 490



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 57/117 (48%)

Query: 134 DLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLA 193
           +L     +  SL++ACA+  +LD    +++++          L  +LI +Y KCG++  A
Sbjct: 59  ELAATPRLYHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADA 118

Query: 194 MQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250
            +VF     +D+ ++TS I G A N    EA  L   M      P+  ++ ++L A 
Sbjct: 119 RRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAA 175


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/549 (38%), Positives = 320/549 (58%), Gaps = 40/549 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K  +  D  V+ +L+  Y+ CG + DAR VF+     +VV+WN+MI  YV++ +    
Sbjct: 433 IIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNA 492

Query: 62  LKLFDKM------PQRNDVS----------------W-----------------NSILGG 82
           +  F  +      P  +  +                W                 N+++  
Sbjct: 493 VATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSM 552

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
            V  G +  A  +FN MP+R LVSW  +I+GF Q+G  + A   F+ MQ   ++P+    
Sbjct: 553 FVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITF 612

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
             LL+ACA   AL  G  +++ I +  +  D ++   LI MY KCGSID A  VFH+   
Sbjct: 613 TGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPK 672

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           K+V ++TS I G A +G   EA ELF  M+ +G+ PD I+++  LSAC+H G +++G ++
Sbjct: 673 KNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLHH 732

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F SM D + I+P ++HY CMVDL GRAGLL EA  FI  M +KPD+ +WG LLGAC+VH 
Sbjct: 733 FESMKDFN-IEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGACQVHL 791

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           + E+ +++    +E D N DG Y++LSNIY      +   ++RK M  R + + PG S I
Sbjct: 792 DVELAEKVAQKKLELDPNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVVKKPGQSWI 851

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E+DG VH F + D++H + +EI+     +  ++K  GY  +TR V+ D+E+ EKE  + +
Sbjct: 852 EVDGRVHIFCSDDKTHPQIEEIHAELGRLHMEMKKLGYVPDTRYVLHDVEDSEKEHALCH 911

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSE+LA+A+GL+ T P + I I KN+R+C DCH+A KL+SK+ KR+I  RD   +HHF+D
Sbjct: 912 HSERLAIAYGLLKTPPLTPIVISKNLRVCGDCHTATKLISKITKRQIIARDSNRFHHFKD 971

Query: 503 GSCSCLEYW 511
           G CSC ++W
Sbjct: 972 GVCSCGDFW 980



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 173/347 (49%), Gaps = 41/347 (11%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D+F+ N LI  Y+ CG    A+ +FDE  D DV SWN ++ GYV++    E  +L ++M 
Sbjct: 138 DIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMV 197

Query: 70  QRN--------------------------------DVSWNS-------ILGGLVRFGSVD 90
           Q                                  +  W++       ++   ++ G VD
Sbjct: 198 QDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVD 257

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           DA +VFN +P+R L++W  +I+G A++ + K+A  LF+ M+   ++P+    VSLL AC 
Sbjct: 258 DALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACN 317

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
              AL+ G  V++ +++  +  +  +  AL+ MY KCGS++ A++VF+    ++V ++T+
Sbjct: 318 HPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTA 377

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I G A +G   EAF  F  M   GI P+ ++++++L ACS    +++G    H      
Sbjct: 378 MIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQG-RQIHDRIIKA 436

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
           G   +      ++ +  + G L +A N    +  K + V W  ++ A
Sbjct: 437 GYITDDRVRTALLSMYAKCGSLMDARNVFERIS-KQNVVAWNAMITA 482



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 108/381 (28%), Positives = 172/381 (45%), Gaps = 41/381 (10%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +++   +  D+FV  +LI  +  CG V DA  VF+     D+++W SMI G  R+ +  +
Sbjct: 230 LILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQ 289

Query: 61  GLKLFDKMP----QRNDVSWNSILG---------------------GL------------ 83
              LF  M     Q + V++ S+L                      GL            
Sbjct: 290 ACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLS 349

Query: 84  --VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + GS++DA  VFN +  R++VSW  +I+GFAQ+GR +EA   F +M    +EPN   
Sbjct: 350 MYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVT 409

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
            +S+L AC++  AL  G  ++  I K     D  +  AL+ MYAKCGS+  A  VF    
Sbjct: 410 FMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERIS 469

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
            ++V A+ + I     +     A   F+ +  +GI PDS ++ ++L+ C     +E G  
Sbjct: 470 KQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELG-K 528

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           +  S+    G + +L     +V +    G L  A N    MP + D V W T++     H
Sbjct: 529 WVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPER-DLVSWNTIIAGFVQH 587

Query: 322 RNAEMGQRIGNMLIESDQNHD 342
              +       M+ ES    D
Sbjct: 588 GENQFAFDYFKMMQESGVKPD 608



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 165/335 (49%), Gaps = 40/335 (11%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           +++V  +L+  Y+ CG + DA  VF+     +VVSW +MI G+ ++G + E    F+KM 
Sbjct: 340 EIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMI 399

Query: 70  QR----NDVSWNSILGGLVR-----------------------------------FGSVD 90
           +     N V++ SILG   R                                    GS+ 
Sbjct: 400 ESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLM 459

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           DA  VF ++ K+++V+W  +I+ + Q+ +   A+A F+ +    ++P+S+   S+L+ C 
Sbjct: 460 DARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCK 519

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
              AL+ G WV S I +   + D  +  AL+ M+  CG +  AM +F+   ++D+ ++ +
Sbjct: 520 SPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNT 579

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I G   +G +  AF+ F+ M+  G+ PD I++  +L+AC+    + +G    H++    
Sbjct: 580 IIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEG-RRLHALITEA 638

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMK 305
            +  ++     ++ +  + G +++A     ++P K
Sbjct: 639 ALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKK 673



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 182/372 (48%), Gaps = 43/372 (11%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVV----SWNSMINGYVRNGEILEGLKLFDKMP- 69
           N+ +   S  G++ +A  V    D   +     +++S++   +++  + +G ++ + +  
Sbjct: 73  NAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKF 132

Query: 70  ---QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALAL 126
              Q +   WN ++    + G+ + A ++F++MP + + SW +L+ G+ Q+ R +EA  L
Sbjct: 133 SKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRL 192

Query: 127 FREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAK 186
             +M    ++P+    V +L+ACA    +D G  ++S I       D  +  ALI+M+ K
Sbjct: 193 HEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIK 252

Query: 187 CGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAV 246
           CG +D A++VF++   +D+  +TS I GLA +    +A  LF+ M+ +G+ PD ++++++
Sbjct: 253 CGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSL 312

Query: 247 LSACSHLGWVEKGFYYFHSMFDVHGIKPEL------------------------------ 276
           L AC+H   +E+G      M +V G+  E+                              
Sbjct: 313 LKACNHPEALEQGKRVHARMKEV-GLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRN 371

Query: 277 -DHYACMVDLLGRAGLLEEAENFIASM---PMKPDNVIWGTLLGACRVHRNAEMGQRIGN 332
              +  M+    + G +EEA  F   M    ++P+ V + ++LGAC      + G++I +
Sbjct: 372 VVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHD 431

Query: 333 MLIESDQNHDGR 344
            +I++    D R
Sbjct: 432 RIIKAGYITDDR 443



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 123/253 (48%), Gaps = 39/253 (15%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++++  F  D+ ++N+L+  +  CG +  A  +F++  + D+VSWN++I G+V++GE   
Sbjct: 533 LIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQF 592

Query: 61  GLKLFDKMPQR----NDVSWNSILG-------------------------------GLV- 84
               F  M +     + +++  +L                                GL+ 
Sbjct: 593 AFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGLIS 652

Query: 85  ---RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + GS+DDA  VF+ +PK+++ SW  +I+G+AQ+GR KEAL LF +MQ   ++P+   
Sbjct: 653 MYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWIT 712

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
            V  LSACA  G +  G   +  ++   I+        ++D++ + G +  A++  +   
Sbjct: 713 FVGALSACAHAGLIKEGLHHFESMKDFNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQ 772

Query: 202 DKDVSAYTSAIFG 214
            K  S    A+ G
Sbjct: 773 VKPDSRLWGALLG 785



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 23/163 (14%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++ + +   DV V   LI  Y+ CG + DA  VF      +V SW SMI GY ++G   E
Sbjct: 634 LITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKE 693

Query: 61  GLKLFDKMPQRN-DVSWNSILG-------------GLVRFGSVDDACRVFNQMPKRSLVS 106
            L+LF +M Q      W + +G             GL  F S+ D    FN  P+  +  
Sbjct: 694 ALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLHHFESMKD----FNIEPR--MEH 747

Query: 107 WVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
           +  ++  F + G   EA+    +MQ   ++P+S +  +LL AC
Sbjct: 748 YGCMVDLFGRAGLLHEAVEFINKMQ---VKPDSRLWGALLGAC 787


>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
 gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
          Length = 951

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 204/486 (41%), Positives = 293/486 (60%), Gaps = 33/486 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYS-VCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
            VK   A  + V N+LI+ ++ + GR+ DA  +   +  +D  ++N++I  Y R G    
Sbjct: 236 AVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASVDASTFNTLITAYARAGR--- 292

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
                                       V DA  +F++MP R+ VSW  +++G+ Q G  
Sbjct: 293 ----------------------------VTDARALFDEMPARNAVSWSAMVNGYVQAGDG 324

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
           +EAL LF  MQ+  + P+  +LV +L+ACAQLG L+ G WV+ Y++   I++   L  AL
Sbjct: 325 REALGLFARMQADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTAL 384

Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           +DMYAKCG + LAM+VF    +K+V A+T+ I GLAM+G   EA ELF  M+  G+ PD 
Sbjct: 385 VDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDD 444

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
           I++I  L AC+H G V+KG   F SM   +GIKP+++HY CMVDLL R GLL EA   + 
Sbjct: 445 IAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVE 504

Query: 301 SMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGEN 360
            MPMKPD +IWG L+  CR H+N E+ + +    IE + +  G Y+LL NIY  + +  +
Sbjct: 505 KMPMKPDALIWGALMAGCRFHKNVELAEYVVKHWIELEPDKSGAYVLLGNIYAASGRHAS 564

Query: 361 AEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIK-NYG 419
           A E+R  MR++ + + PGCS +E+ GV+H+F+ GD SH   +EI   W+EI  +I+   G
Sbjct: 565 AREIRHLMREKGVDKTPGCSTVEIKGVIHQFIVGDLSHPFIEEILSKWDEIDSRIRLEEG 624

Query: 420 YNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMK 479
           Y  + + V+ DIEEEEKE  +  HSEK+A+AF LI T     IRIVKN+R+C DCH   K
Sbjct: 625 YVPDKKEVLLDIEEEEKENALSRHSEKMAIAFALINTSDDMPIRIVKNLRVCHDCHHVTK 684

Query: 480 LVSKVF 485
           L+SKVF
Sbjct: 685 LISKVF 690



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 124/290 (42%), Gaps = 74/290 (25%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++++ + + D    N+LI  Y+  GRV DAR +FDE    + VSW++M+NGYV+ G+  E
Sbjct: 267 VLLRTAASVDASTFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGRE 326

Query: 61  GLKLFDKMP----QRNDVSWNSILGGLVRFGSVDD------------------------- 91
            L LF +M     + +D     +L    + G ++                          
Sbjct: 327 ALGLFARMQADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVD 386

Query: 92  ----------ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
                     A  VF  M ++++++W  +I G A +GR  EAL LF +M+ L ++P+   
Sbjct: 387 MYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIA 446

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
            +  L AC   G +D G  ++  + +K                               YG
Sbjct: 447 FIGALCACTHTGLVDKGRELFDSMVRK-------------------------------YG 475

Query: 202 DKD-VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250
            K  +  Y   +  LA NG   EA E+ E M  K   PD++ + A+++ C
Sbjct: 476 IKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMK---PDALIWGALMAGC 522



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 103/269 (38%), Gaps = 40/269 (14%)

Query: 90  DDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
           D A  V +   +RS      LI   A + RP  AL L+  +      P    L SLL + 
Sbjct: 157 DQAALVTSGWLRRSADLHNALIRALAGSARPHLALPLYAHLLRAGHHPTPHTLPSLLKSL 216

Query: 150 AQLGALDYGNWVYSYIQKKCIKL------------------------------------D 173
           A   A+     +   +    +KL                                    D
Sbjct: 217 ALSPAVPGARGLALAVHAHAVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASVD 276

Query: 174 SILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKS 233
           +     LI  YA+ G +  A  +F     ++  ++++ + G    G   EA  LF  M++
Sbjct: 277 ASTFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQA 336

Query: 234 KGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLE 293
            G+ PD    + VL+AC+ LG +E+G  + H     + I+  +     +VD+  + G ++
Sbjct: 337 DGVRPDDTVLVGVLAACAQLGVLEQG-KWVHGYLKANNIRITVFLGTALVDMYAKCGEMQ 395

Query: 294 EAENFIASMPMKPDNVI-WGTLLGACRVH 321
            A        MK  NV+ W T++    +H
Sbjct: 396 LAMEVFKV--MKEKNVLAWTTMIKGLAMH 422


>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Glycine max]
          Length = 609

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 207/524 (39%), Positives = 309/524 (58%), Gaps = 44/524 (8%)

Query: 30  ARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDK------MPQRNDVSWNSILGGL 83
           A  +FD+    D+V +N+M  GY R  + L  + L  +      +P  +D +++S+L   
Sbjct: 88  AHRMFDKIPQPDIVLFNTMARGYARFDDPLRAILLCSQVLCSGLLP--DDYTFSSLLKAC 145

Query: 84  VRFGS-----------------------------------VDDACRVFNQMPKRSLVSWV 108
            R  +                                   VD A RVF+++ +  +V++ 
Sbjct: 146 ARLKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGEPCVVAYN 205

Query: 109 VLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKK 168
            +I+  A+N RP EALALFRE+Q   L+P    ++  LS+CA LGALD G W++ Y++K 
Sbjct: 206 AIITSCARNSRPNEALALFRELQESGLKPTDVTMLVALSSCALLGALDLGRWIHEYVKKN 265

Query: 169 CIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELF 228
                  +  ALIDMYAKCGS+D A+ VF     +D  A+++ I   A +GH  +A  + 
Sbjct: 266 GFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYATHGHGSQAISML 325

Query: 229 ENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGR 288
             MK   + PD I+++ +L ACSH G VE+G+ YFHSM   +GI P + HY CM+DLLGR
Sbjct: 326 REMKKAKVQPDEITFLGILYACSHTGLVEEGYEYFHSMTHEYGIVPSIKHYGCMIDLLGR 385

Query: 289 AGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILL 348
           AG LEEA  FI  +P+KP  ++W TLL +C  H N EM + +   + E D +H G Y++L
Sbjct: 386 AGRLEEACKFIDELPIKPTPILWRTLLSSCSSHGNVEMAKLVIQRIFELDDSHGGDYVIL 445

Query: 349 SNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFW 408
           SN+     + ++   +RK M  +   + PGCS IE++ VVHEF +GD  H  +  ++   
Sbjct: 446 SNLCARNGRWDDVNHLRKMMVDKGALKVPGCSSIEVNNVVHEFFSGDGVHSTSTILHHAL 505

Query: 409 EEIVKKIKNYGYNVETRSVMF-DIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKN 467
           +E+VK++K  GY  +T  V + DIE+EEKE V+ YHSEKLA+ +GL+ T PG+ IR+VKN
Sbjct: 506 DELVKELKLAGYVPDTSLVFYADIEDEEKEIVLRYHSEKLAITYGLLNTPPGTTIRVVKN 565

Query: 468 IRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           +R+C DCH+A K +S +F R+I +RD + +HHF+DG CSC +YW
Sbjct: 566 LRVCVDCHNAAKFISLIFGRQIILRDVQRFHHFKDGKCSCGDYW 609



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 122/251 (48%), Gaps = 9/251 (3%)

Query: 78  SILGGLVRF-------GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM 130
           ++L  L+ F        S+D A R+F+++P+  +V +  +  G+A+   P  A+ L  ++
Sbjct: 67  TVLTKLINFCTSNPTIASMDHAHRMFDKIPQPDIVLFNTMARGYARFDDPLRAILLCSQV 126

Query: 131 QSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSI 190
               L P+     SLL ACA+L AL+ G  ++    K  +  +  +C  LI+MY  C  +
Sbjct: 127 LCSGLLPDDYTFSSLLKACARLKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDV 186

Query: 191 DLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250
           D A +VF   G+  V AY + I   A N    EA  LF  ++  G+ P  ++ +  LS+C
Sbjct: 187 DAARRVFDKIGEPCVVAYNAIITSCARNSRPNEALALFRELQESGLKPTDVTMLVALSSC 246

Query: 251 SHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVI 310
           + LG ++ G  + H     +G    +     ++D+  + G L++A +    MP + D   
Sbjct: 247 ALLGALDLG-RWIHEYVKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRR-DTQA 304

Query: 311 WGTLLGACRVH 321
           W  ++ A   H
Sbjct: 305 WSAMIVAYATH 315



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 130/333 (39%), Gaps = 82/333 (24%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + VK     +++V  +LI  Y+ C  V  AR VFD+  +  VV++N++I    RN    E
Sbjct: 160 LAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGEPCVVAYNAIITSCARNSRPNE 219

Query: 61  GLKLFDKMPQR----NDV------SWNSILGGL--------------------------- 83
            L LF ++ +      DV      S  ++LG L                           
Sbjct: 220 ALALFRELQESGLKPTDVTMLVALSSCALLGALDLGRWIHEYVKKNGFDQYVKVNTALID 279

Query: 84  --VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + GS+DDA  VF  MP+R   +W  +I  +A +G   +A+++ REM+   ++P+   
Sbjct: 280 MYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYATHGHGSQAISMLREMKKAKVQPDEIT 339

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
            + +L AC+  G ++ G   Y Y                               + H YG
Sbjct: 340 FLGILYACSHTGLVEEG---YEYFH----------------------------SMTHEYG 368

Query: 202 -DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
               +  Y   I  L   G   EA +  + +    I P  I +  +LS+CS  G VE   
Sbjct: 369 IVPSIKHYGCMIDLLGRAGRLEEACKFIDELP---IKPTPILWRTLLSSCSSHGNVEMAK 425

Query: 261 YYFHSMF---DVHGIKPELDHYACMVDLLGRAG 290
                +F   D HG       Y  + +L  R G
Sbjct: 426 LVIQRIFELDDSHG-----GDYVILSNLCARNG 453



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 113/275 (41%), Gaps = 51/275 (18%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V KN F   V V  +LI  Y+ CG + DA  VF +    D  +W++MI  Y  +G   + 
Sbjct: 262 VKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYATHGHGSQA 321

Query: 62  LKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLIS 112
           + +  +M     Q +++++  IL      G V++    F+ M        S+  +  +I 
Sbjct: 322 ISMLREMKKAKVQPDEITFLGILYACSHTGLVEEGYEYFHSMTHEYGIVPSIKHYGCMID 381

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKL 172
              + GR +EA     E   L ++P   +  +LLS+C+  G ++    V   I     +L
Sbjct: 382 LLGRAGRLEEACKFIDE---LPIKPTPILWRTLLSSCSSHGNVEMAKLVIQRI----FEL 434

Query: 173 D----------SILCA-------------ALIDMYA----KCGSIDLAMQVFHSYGDKDV 205
           D          S LCA              ++D  A     C SI++   V H +   D 
Sbjct: 435 DDSHGGDYVILSNLCARNGRWDDVNHLRKMMVDKGALKVPGCSSIEVN-NVVHEFFSGDG 493

Query: 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
              TS I   A++       EL + +K  G  PD+
Sbjct: 494 VHSTSTILHHALD-------ELVKELKLAGYVPDT 521


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 209/551 (37%), Positives = 326/551 (59%), Gaps = 42/551 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VV+  F  D+FV+ +L+  Y+ CG + DA  VFD     DVV W +MI  Y +    L+ 
Sbjct: 158 VVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKA 217

Query: 62  LKLFDKMPQRN--------------------------------------DVS-WNSILGG 82
           L LF KM +                                        DVS  NSI+G 
Sbjct: 218 LMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGM 277

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G+V+ A  VF++M +R+ +SW  ++SG+ QNGRP +AL+LF +MQ+ + +PN    
Sbjct: 278 YAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTA 337

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS--Y 200
           + ++SAC+ LG+   G  +++++    + +D+ L  A++DMY KCG +D A+++F++   
Sbjct: 338 LIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCEL 397

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
           G++DVS++   I G  ++GH  EA ELF  M+ +G+ P+ I++ ++LSACSH G +++G 
Sbjct: 398 GERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGR 457

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
             F  M  +  ++PE+ HYACMVD+LGRAG L EA   I  +P +P + +WG LL ACR+
Sbjct: 458 KCFADMTKL-SVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRI 516

Query: 321 HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS 380
           H N E+G+   N L + +  H G Y+L+SNIY  + K +  E VR+ M+ R +K+    S
Sbjct: 517 HGNTELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFS 576

Query: 381 LIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVI 440
           +IE    VH F   D+S    +E+Y+  E +  ++K  GY  +   V+ D+E E+KE ++
Sbjct: 577 VIEFGTEVHGFHTADQSSPYYREVYRKVESLAIEMKMVGYVPDLSCVLHDVEPEDKEHLL 636

Query: 441 GYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF 500
            YHSEKLA+AFG++    G  I++ KN+R+CSDCH A K +S ++ RKI +RD   +HHF
Sbjct: 637 NYHSEKLAVAFGIMKMDQGMPIQVTKNLRVCSDCHWAFKFISSIYGRKIIVRDGNRFHHF 696

Query: 501 EDGSCSCLEYW 511
           + G CSC +YW
Sbjct: 697 QGGRCSCGDYW 707



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 80/159 (50%), Gaps = 4/159 (2%)

Query: 97  NQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA-QLGAL 155
            Q P   L +   ++  +A  GR  EA+ L+  MQ + +  N+     +L  CA +LGA+
Sbjct: 92  TQAPNSFLCN--TMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAV 149

Query: 156 DYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGL 215
            +G  V+  + +     D  + AAL+DMYAKCG I  A +VF     +DV  +T+ I   
Sbjct: 150 -FGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLY 208

Query: 216 AMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
                 ++A  LF  M+ +G   D I+ I+V SA   LG
Sbjct: 209 EQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLG 247


>gi|125557337|gb|EAZ02873.1| hypothetical protein OsI_25005 [Oryza sativa Indica Group]
          Length = 651

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 209/512 (40%), Positives = 308/512 (60%), Gaps = 32/512 (6%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + VK   A D+FV+N+L+ FY V G V   R                             
Sbjct: 171 LAVKAGAAGDLFVRNALVHFYGVSGDVGAMR----------------------------- 201

Query: 61  GLKLFDKMPQRNDV-SWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGR 119
             ++FD++P+  DV +WN +L G VR G +  A  VF++MP R  +SW  L+ G+ +   
Sbjct: 202 --RVFDELPRVRDVLTWNEVLAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEE 259

Query: 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
            + AL +FR M    + PN A +V+ LSA A+LG L++G +V++ +Q+  + +   + AA
Sbjct: 260 LEVALGVFRNMVEQGVRPNQAAVVTALSAAARLGLLEHGKFVHNVVQRSGMPVCMNVGAA 319

Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
           L+DMYAKCG + +A +VF     +DV A+ + I GLA +G   +A ELFE   S+G+SP 
Sbjct: 320 LVDMYAKCGCVAVAREVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPT 379

Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI 299
           +++++ VL+ CS  G V +G  YF  + + + I+PE++HY CMVDLLGRAGL+ EA   I
Sbjct: 380 NVTFVGVLNGCSRSGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELI 439

Query: 300 ASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGE 359
             M + PD V+WGT+L +C+ H   ++G  +GN LIE D  H G Y+LLS IY +  K +
Sbjct: 440 EGMHIAPDPVLWGTILSSCKTHGLVDLGVSVGNKLIELDPTHSGYYVLLSGIYAKANKWD 499

Query: 360 NAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYG 419
              EVRK M  R   ++ G SL+E  G VH+FL GD  H+ + +IY   + I K++   G
Sbjct: 500 EVREVRKLMSSRGTNKSAGWSLMEAHGKVHKFLVGDTYHKDSVQIYDTLDMINKRLTEAG 559

Query: 420 YNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMK 479
           Y  +  SV+ DI EEEK   +  HSE+LA+A+G I  + GS IRIVKN+R+C DCH   K
Sbjct: 560 YVPDVSSVLHDIGEEEKVHAVKVHSERLAIAYGFIVLEAGSPIRIVKNLRVCGDCHEFSK 619

Query: 480 LVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           +V+ VF+R+I +RD   +HH ++G CSCL+YW
Sbjct: 620 MVTMVFQREIIVRDGSRFHHMKEGKCSCLDYW 651


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/551 (39%), Positives = 322/551 (58%), Gaps = 42/551 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K+   +D+FV N+LI  Y+  G + DAR  F +    DVVSWNS+I  Y +N + +  
Sbjct: 342 VIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTA 401

Query: 62  LKLFDKM-------------------PQRND---------------------VSWNSILG 81
              F KM                    Q  D                     V  N+++ 
Sbjct: 402 HGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVD 461

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL-DLEPNSA 140
              + G +D A +VF  +P + ++SW  LI+G+AQNG   EA+ +++ M+   ++ PN  
Sbjct: 462 MYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQG 521

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
             VS+L A A +GAL  G  ++  + K  + LD  +   LID+Y KCG +  AM +F+  
Sbjct: 522 TWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQV 581

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
             +    + + I    ++GH+ +  +LF  M  +G+ PD ++++++LSACSH G+VE+G 
Sbjct: 582 PQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGK 641

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
           + F  M + +GIKP L HY CMVDLLGRAG LE A +FI  MP++PD  IWG LLGACR+
Sbjct: 642 WCFRLMQE-YGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRI 700

Query: 321 HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS 380
           H N E+G+   + L E D  + G Y+LLSNIY    K E  ++VR   R+R +K+ PG S
Sbjct: 701 HGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWS 760

Query: 381 LIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVI 440
            IE++  V  F  G++SH K +EIY+    +  K+K+ GY  +   V+ D+EE+EKE ++
Sbjct: 761 TIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHIL 820

Query: 441 GYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF 500
             HSE+LA+AFG+I T P S IRI KN+R+C DCH+A K +S++ +R+I +RD   +HHF
Sbjct: 821 TSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHF 880

Query: 501 EDGSCSCLEYW 511
           +DG CSC +YW
Sbjct: 881 KDGICSCGDYW 891



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 114/381 (29%), Positives = 189/381 (49%), Gaps = 56/381 (14%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           K  F ++VFV  SLI  YS  G    AR +FD+    D+ SWN+MI+G ++NG   + L 
Sbjct: 243 KLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALD 302

Query: 64  LFDKM-------------------PQRNDVSW--------------------NSILGGLV 84
           + D+M                   PQ  D+S                     N+++    
Sbjct: 303 VLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYA 362

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
           +FG+++DA + F QM    +VSW  +I+ + QN  P  A   F +MQ    +P+   LVS
Sbjct: 363 KFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVS 422

Query: 145 LLSACAQLGALDYGNWVYSYIQKKC-IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           L S  AQ         V+ +I ++  +  D ++  A++DMYAK G +D A +VF     K
Sbjct: 423 LASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVK 482

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKS-KGISPDSISYIAVLSACSHLGWVEKGFYY 262
           DV ++ + I G A NG + EA E+++ M+  K I P+  +++++L A +H+G +++G   
Sbjct: 483 DVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQG--- 539

Query: 263 FHSMFDVHG--IKP--ELDHY--ACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLG 316
                 +HG  IK    LD +   C++D+ G+ G L +A +    +P +  +V W  ++ 
Sbjct: 540 ----MKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQE-SSVTWNAIIS 594

Query: 317 ACRVHRNAEMGQRI-GNMLIE 336
              +H +AE   ++ G ML E
Sbjct: 595 CHGIHGHAEKTLKLFGEMLDE 615



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 117/233 (50%), Gaps = 6/233 (2%)

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL-DLEPNSAILVS 144
            G V  +   F+Q+P++ + +W  +IS +  NG   EA+  F ++  + ++ P+      
Sbjct: 164 LGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPP 223

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           +L AC   G L  G  ++ +  K   + +  + A+LI MY++ G   +A  +F     +D
Sbjct: 224 VLKAC---GTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRD 280

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           + ++ + I GL  NG++ +A ++ + M+ +GI  + ++ +++L  C  LG +       H
Sbjct: 281 MGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAM-LIH 339

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
                HG++ +L     ++++  + G LE+A      M +  D V W +++ A
Sbjct: 340 LYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFIT-DVVSWNSIIAA 391


>gi|242032459|ref|XP_002463624.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
 gi|241917478|gb|EER90622.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
          Length = 607

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 194/421 (46%), Positives = 288/421 (68%)

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           DA  VF++M K S+V+W  +I G+ + G   +A+ LFREMQ+  + P+   ++ +L+A A
Sbjct: 187 DARNVFDRMDKSSVVTWSAMIGGYVRGGLSSDAVGLFREMQASGVRPDEVTVIGVLAAAA 246

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
            LGAL+   WV  +++++ I     LC ALID  AKCG +D A+ VF    ++ V ++TS
Sbjct: 247 DLGALELARWVGRFVEREGIGKSVTLCNALIDALAKCGDVDGAVAVFQGMEERTVVSWTS 306

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I  LAM G   EA  +FE MK+ G+ PD + +I VL+ACSH G V++G+ YF SM   +
Sbjct: 307 VIDALAMEGRGKEAVAVFEAMKTAGVRPDDVVFIGVLTACSHAGMVDEGYGYFDSMKMEY 366

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
           GI P+++HY CMVD+ GRAG++E A  FI +MPMKP+ +IW TL+ ACR H   E+G+ I
Sbjct: 367 GIDPKIEHYGCMVDMFGRAGMVERAMEFIHTMPMKPNPIIWRTLVAACRAHGRLELGESI 426

Query: 331 GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHE 390
              L+     H+  Y++LSN+Y  T + +   E+R+ M KR IK+ PGCSL+ELDG VHE
Sbjct: 427 TRNLLNEYPAHEANYVMLSNVYALTQRWKEKSEIRREMSKRGIKKVPGCSLVELDGEVHE 486

Query: 391 FLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALA 450
           F+AGD SH + +EIY   EE+ +++K+ G+   T  V+ D++EE+KE  + +HSEKLA+A
Sbjct: 487 FIAGDESHPQWKEIYMMVEEMARELKHVGHISATSEVLLDLDEEDKEGALQWHSEKLAIA 546

Query: 451 FGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEY 510
           F L+ T PG+ +R+VKN+R+CSDCH+A+K +S V+ R+I +RDR  +H F++GSCSC ++
Sbjct: 547 FVLLRTPPGTQVRVVKNLRVCSDCHAAIKCISLVYNREIIVRDRSRFHRFKNGSCSCNDF 606

Query: 511 W 511
           W
Sbjct: 607 W 607



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 115/244 (47%), Gaps = 52/244 (21%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGR--VRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +K  FA D +V N+LI  YS  G   + DAR VFD  D   VV+W++MI GYVR G   +
Sbjct: 159 LKFGFATDQYVSNTLIHMYSCFGGEFLGDARNVFDRMDKSSVVTWSAMIGGYVRGGLSSD 218

Query: 61  GLKLFDKM------PQRNDV----------------SW-----------------NSILG 81
            + LF +M      P    V                 W                 N+++ 
Sbjct: 219 AVGLFREMQASGVRPDEVTVIGVLAAAADLGALELARWVGRFVEREGIGKSVTLCNALID 278

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
            L + G VD A  VF  M +R++VSW  +I   A  GR KEA+A+F  M++  + P+  +
Sbjct: 279 ALAKCGDVDGAVAVFQGMEERTVVSWTSVIDALAMEGRGKEAVAVFEAMKTAGVRPDDVV 338

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCI------KLDSILCAALIDMYAKCGSIDLAMQ 195
            + +L+AC+  G +D G   Y Y     +      K++   C  ++DM+ + G ++ AM+
Sbjct: 339 FIGVLTACSHAGMVDEG---YGYFDSMKMEYGIDPKIEHYGC--MVDMFGRAGMVERAME 393

Query: 196 VFHS 199
             H+
Sbjct: 394 FIHT 397



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 76/168 (45%), Gaps = 16/168 (9%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V +      V + N+LI   + CG V  A  VF   ++  VVSW S+I+     G   E 
Sbjct: 261 VEREGIGKSVTLCNALIDALAKCGDVDGAVAVFQGMEERTVVSWTSVIDALAMEGRGKEA 320

Query: 62  LKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQM-------PKRSLVSWVVL 110
           + +F+ M     + +DV +  +L      G VD+    F+ M       PK  +  +  +
Sbjct: 321 VAVFEAMKTAGVRPDDVVFIGVLTACSHAGMVDEGYGYFDSMKMEYGIDPK--IEHYGCM 378

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
           +  F + G  + A+     + ++ ++PN  I  +L++AC   G L+ G
Sbjct: 379 VDMFGRAGMVERAMEF---IHTMPMKPNPIIWRTLVAACRAHGRLELG 423


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/549 (39%), Positives = 324/549 (59%), Gaps = 39/549 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K     D+FV   L+  YS C  + DAR  F+   + D+++WN++I+GY +  E +E 
Sbjct: 358 LMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEA 417

Query: 62  LKLFDKMPQR----NDVSWNSIL----------------GGLVRFG-------------- 87
           L LF +M +     N  + ++IL                G  V+ G              
Sbjct: 418 LSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDS 477

Query: 88  -----SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
                 V+DA R+F +     LVS+  +I+ +AQ G+ +EAL LF EMQ ++L+P+  + 
Sbjct: 478 YGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVC 537

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            SLL+ACA L A + G  ++ +I K    LD     +L++MYAKCGSID A + F    +
Sbjct: 538 SSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTE 597

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           + + ++++ I GLA +GH  +A +LF  M  +G+SP+ I+ ++VL AC+H G V +   Y
Sbjct: 598 RGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLY 657

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F SM ++ G KP  +HYACM+DLLGRAG + EA   +  MP + +  +WG LLGA R+H+
Sbjct: 658 FESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHK 717

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           + E+G+R   ML   +    G ++LL+NIY    K EN  EVR+ MR  K+K+ PG S I
Sbjct: 718 DVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWI 777

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E+   V+ FL GDRSH ++QEIY   +E+   +   GY       + D+E+ EKE ++ +
Sbjct: 778 EVKDKVYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGYVPMVEIDLHDVEQSEKELLLYH 837

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSEKLA+AFGLI T  G+ IR+ KN+R+C DCH+A K + K+  R+I +RD   +HHF+D
Sbjct: 838 HSEKLAVAFGLIATPQGAPIRVKKNLRVCVDCHTAFKYICKIVSREIIVRDINRFHHFKD 897

Query: 503 GSCSCLEYW 511
           GSCSC +YW
Sbjct: 898 GSCSCGDYW 906



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 169/351 (48%), Gaps = 22/351 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K  + +D F  N+L+  Y+  G + DA  VF++    D+VSWN++I G V +    + 
Sbjct: 284 LIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQA 343

Query: 62  LKLFDKMPQRNDVSWNS--------ILGGLVRFGS----VDDACRVFNQMPKRSLVSWVV 109
           L+L  +M ++   S           +  GLV   S    ++DA   FN +P++ L++W  
Sbjct: 344 LELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNA 403

Query: 110 LISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC 169
           +ISG++Q     EAL+LF EM    +  N   L ++L + A L  +     V+    K  
Sbjct: 404 IISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSG 463

Query: 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFE 229
              D  +  +LID Y KC  ++ A ++F      D+ ++TS I   A  G   EA +LF 
Sbjct: 464 FHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFL 523

Query: 230 NMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE--LDHYA--CMVDL 285
            M+   + PD     ++L+AC++L   E+G         VH +K    LD +A   +V++
Sbjct: 524 EMQDMELKPDRFVCSSLLNACANLSAFEQG-----KQLHVHILKYGFVLDIFAGNSLVNM 578

Query: 286 LGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIE 336
             + G +++A    + +  +   V W  ++G    H +     ++ N +++
Sbjct: 579 YAKCGSIDDAGRAFSELTER-GIVSWSAMIGGLAQHGHGRQALQLFNQMLK 628



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 129/272 (47%), Gaps = 39/272 (14%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           + K+  + D  ++N LI  YS C     AR + DES + D+VSW+++I+GY +NG     
Sbjct: 82  ITKSGLSDDPSIRNHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGA 141

Query: 62  LKLFDKMP----QRNDVSWNSILGG--------------------------------LVR 85
           L  F +M     + N+ +++S+L                                  +V 
Sbjct: 142 LMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVM 201

Query: 86  FGSVD---DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
           +   D   D+ R+F+++P+R++VSW  L S + Q     EA+ LF EM    ++PN   L
Sbjct: 202 YAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSL 261

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S+++AC  L     G  ++ Y+ K     D     AL+DMYAK G +  A+ VF     
Sbjct: 262 SSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQ 321

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSK 234
            D+ ++ + I G  ++ H  +A EL   MK +
Sbjct: 322 PDIVSWNAVIAGCVLHEHHEQALELLGQMKRQ 353



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 91/402 (22%), Positives = 162/402 (40%), Gaps = 99/402 (24%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +VV + F  DVFV N+L+  Y+ C    D++ +FDE  + +VVSWN++ + YV+     E
Sbjct: 182 VVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGE 241

Query: 61  GLKLFDKM------PQR---------------------------------NDVSWNSILG 81
            + LF +M      P                                   +  S N+++ 
Sbjct: 242 AVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVD 301

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G + DA  VF ++ +  +VSW  +I+G   +   ++AL L  +M+          
Sbjct: 302 MYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMK---------- 351

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
                              ++S + K  ++ D  +   L+DMY+KC  ++ A   F+   
Sbjct: 352 -----------------RQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLP 394

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS---------- 251
           +KD+ A+ + I G +     +EA  LF  M  +GI  +  +   +L + +          
Sbjct: 395 EKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQ 454

Query: 252 -HLGWVEKGF----YYFHSMFDVHG---------------IKPELDHYACMVDLLGRAGL 291
            H   V+ GF    Y  +S+ D +G                  +L  +  M+    + G 
Sbjct: 455 VHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQ 514

Query: 292 LEEAENF---IASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
            EEA      +  M +KPD  +  +LL AC      E G+++
Sbjct: 515 GEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQL 556



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 130/299 (43%), Gaps = 13/299 (4%)

Query: 43  VSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVF------ 96
           VS++ +++       +  GL++   + +       SI   L+   S    CR F      
Sbjct: 57  VSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYS---KCRXFGYARKL 113

Query: 97  -NQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGAL 155
            ++  +  LVSW  LISG+AQNG    AL  F EM  L ++ N     S+L AC+ +  L
Sbjct: 114 VDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDL 173

Query: 156 DYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGL 215
             G  V+  +     + D  +   L+ MYAKC     + ++F    +++V ++ +     
Sbjct: 174 RIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCY 233

Query: 216 AMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE 275
                  EA  LF  M   GI P+  S  ++++AC+ L    +G    H      G   +
Sbjct: 234 VQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRG-KIIHGYLIKLGYDWD 292

Query: 276 LDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMG-QRIGNM 333
                 +VD+  + G L +A +    +  +PD V W  ++  C +H + E   + +G M
Sbjct: 293 PFSANALVDMYAKVGDLADAISVFEKIK-QPDIVSWNAVIAGCVLHEHHEQALELLGQM 350



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 63/142 (44%)

Query: 110 LISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC 169
           LI    Q     +  A+   +   +  P S     LLS C    +L  G  ++++I K  
Sbjct: 27  LIQTVPQFSEDPQTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSG 86

Query: 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFE 229
           +  D  +   LI++Y+KC     A ++     + D+ ++++ I G A NG    A   F 
Sbjct: 87  LSDDPSIRNHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFH 146

Query: 230 NMKSKGISPDSISYIAVLSACS 251
            M   G+  +  ++ +VL ACS
Sbjct: 147 EMHLLGVKCNEFTFSSVLKACS 168


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/549 (39%), Positives = 324/549 (59%), Gaps = 39/549 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K     D+FV   L+  YS C  + DAR  F+   + D+++WN++I+GY +  E +E 
Sbjct: 385 LMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEA 444

Query: 62  LKLFDKMPQR----NDVSWNSIL----------------GGLVRFG-------------- 87
           L LF +M +     N  + ++IL                G  V+ G              
Sbjct: 445 LSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDS 504

Query: 88  -----SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
                 V+DA R+F +     LVS+  +I+ +AQ G+ +EAL LF EMQ ++L+P+  + 
Sbjct: 505 YGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVC 564

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            SLL+ACA L A + G  ++ +I K    LD     +L++MYAKCGSID A + F    +
Sbjct: 565 SSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTE 624

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           + + ++++ I GLA +GH  +A +LF  M  +G+SP+ I+ ++VL AC+H G V +   Y
Sbjct: 625 RGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLY 684

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F SM ++ G KP  +HYACM+DLLGRAG + EA   +  MP + +  +WG LLGA R+H+
Sbjct: 685 FESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHK 744

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           + E+G+R   ML   +    G ++LL+NIY    K EN  EVR+ MR  K+K+ PG S I
Sbjct: 745 DVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWI 804

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E+   V+ FL GDRSH ++QEIY   +E+   +   GY       + D+E+ EKE ++ +
Sbjct: 805 EVKDKVYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGYVPMVEIDLHDVEQSEKELLLYH 864

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSEKLA+AFGLI T  G+ IR+ KN+R+C DCH+A K + K+  R+I +RD   +HHF+D
Sbjct: 865 HSEKLAVAFGLIATPQGAPIRVKKNLRVCVDCHTAFKYICKIVSREIIVRDINRFHHFKD 924

Query: 503 GSCSCLEYW 511
           GSCSC +YW
Sbjct: 925 GSCSCGDYW 933



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 166/353 (47%), Gaps = 41/353 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           + K+  + D  ++N LI  YS C     AR + DES + D+VSW+++I+GY +NG     
Sbjct: 82  ITKSGLSDDPSIRNHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGA 141

Query: 62  LKLFDKMP----QRNDVSWNSILGG--------------------------------LVR 85
           L  F +M     + N+ +++S+L                                  +V 
Sbjct: 142 LMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVM 201

Query: 86  FGSVD---DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
           +   D   D+ R+F+++P+R++VSW  L S + Q     EA+ LF EM    ++PN   L
Sbjct: 202 YAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSL 261

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S+++AC  L     G  ++ Y+ K     D     AL+DMYAK G +  A+ VF     
Sbjct: 262 SSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQ 321

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
            D+ ++ + I G  ++ H  +A EL   MK  GI P+  +  + L AC+ +G  E G   
Sbjct: 322 PDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELG-RQ 380

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
            HS      ++ +L     +VD+  +  LLE+A      +P K D + W  ++
Sbjct: 381 LHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEK-DLIAWNAII 432



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 101/402 (25%), Positives = 175/402 (43%), Gaps = 72/402 (17%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +VV + F  DVFV N+L+  Y+ C    D++ +FDE  + +VVSWN++ + YV+     E
Sbjct: 182 VVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGE 241

Query: 61  GLKLFDKM------PQR---------------------------------NDVSWNSILG 81
            + LF +M      P                                   +  S N+++ 
Sbjct: 242 AVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVD 301

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G + DA  VF ++ +  +VSW  +I+G   +   ++AL L  +M+   + PN   
Sbjct: 302 MYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFT 361

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           L S L ACA +G  + G  ++S + K  ++ D  +   L+DMY+KC  ++ A   F+   
Sbjct: 362 LSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLP 421

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS---------- 251
           +KD+ A+ + I G +     +EA  LF  M  +GI  +  +   +L + +          
Sbjct: 422 EKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQ 481

Query: 252 -HLGWVEKGF----YYFHSMFDVHG---------------IKPELDHYACMVDLLGRAGL 291
            H   V+ GF    Y  +S+ D +G                  +L  +  M+    + G 
Sbjct: 482 VHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQ 541

Query: 292 LEEAENF---IASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
            EEA      +  M +KPD  +  +LL AC      E G+++
Sbjct: 542 GEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQL 583



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 111/243 (45%), Gaps = 3/243 (1%)

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           A ++ ++  +  LVSW  LISG+AQNG    AL  F EM  L ++ N     S+L AC+ 
Sbjct: 110 ARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSI 169

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSA 211
           +  L  G  V+  +     + D  +   L+ MYAKC     + ++F    +++V ++ + 
Sbjct: 170 VKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNAL 229

Query: 212 IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG 271
                      EA  LF  M   GI P+  S  ++++AC+ L    +G    H      G
Sbjct: 230 FSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRG-KIIHGYLIKLG 288

Query: 272 IKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMG-QRI 330
              +      +VD+  + G L +A +    +  +PD V W  ++  C +H + E   + +
Sbjct: 289 YDWDPFSANALVDMYAKVGDLADAISVFEKIK-QPDIVSWNAVIAGCVLHEHHEQALELL 347

Query: 331 GNM 333
           G M
Sbjct: 348 GQM 350



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 65/142 (45%)

Query: 110 LISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC 169
           LI    Q  +  +  A+   +   +  P S     LLS C    +L  G  ++++I K  
Sbjct: 27  LIQTVPQFSQDPQTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSG 86

Query: 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFE 229
           +  D  +   LI++Y+KC +   A ++     + D+ ++++ I G A NG    A   F 
Sbjct: 87  LSDDPSIRNHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFH 146

Query: 230 NMKSKGISPDSISYIAVLSACS 251
            M   G+  +  ++ +VL ACS
Sbjct: 147 EMHLLGVKCNEFTFSSVLKACS 168


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like
            [Vitis vinifera]
          Length = 1058

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/466 (43%), Positives = 292/466 (62%), Gaps = 1/466 (0%)

Query: 46   NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
            N +I+ Y + G + +G  +F  +  ++ VSWNS++ GL     +DDA  VF +MPKR +V
Sbjct: 594  NGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVV 653

Query: 106  SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
            SW  +IS + Q G  + AL LF +M +  ++PN   + SLLSAC  LGA+  G   ++ I
Sbjct: 654  SWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALI 713

Query: 166  QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
             K        +  +LI MY KCG  D    VF    + D+  + + + G A NG   EA 
Sbjct: 714  FKLGFDTFLFVGNSLITMYFKCGYED-GFCVFEEMPEHDLITWNAVLVGCAQNGLGKEAI 772

Query: 226  ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL 285
            ++FE M+ +GI PD +S++ VL ACSH G V++G+ +F+SM   +GI P + HY CMVDL
Sbjct: 773  KIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDL 832

Query: 286  LGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRY 345
            LGRAG L EAE  I +MP+KPD+VIW  LLGACR+HRN E+GQR+   L +  +     Y
Sbjct: 833  LGRAGYLSEAEALIENMPVKPDSVIWEALLGACRIHRNVELGQRVAERLFQMTKPKSATY 892

Query: 346  ILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIY 405
            +LLSN++      +   E+RK M+ + + + PG S I++   +H F+ GDR+H++ +EIY
Sbjct: 893  VLLSNLFASQGMWDKVAEIRKLMKDQGLTKEPGISWIQVKNKLHCFVTGDRTHDQIEEIY 952

Query: 406  QFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIV 465
               +E     +  GY  +T  V+ D+EEE+K+  + YHSEKLA+ FG++ T  GS I+I+
Sbjct: 953  SALKEYYGCFRATGYMPDTNFVLHDVEEEQKQNELLYHSEKLAVVFGILSTPNGSPIQII 1012

Query: 466  KNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            KN+RIC DCH+ MK +SKV  RKI IRD   +HHF DGSCSC +YW
Sbjct: 1013 KNLRICGDCHTFMKFMSKVTLRKIIIRDGNRFHHFRDGSCSCGDYW 1058



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 174/315 (55%), Gaps = 16/315 (5%)

Query: 9   YDVFVKNS------LIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +D FV  +      L+  Y+  GR+ +AR VF+   + +VVSWN+MI+GYV+NG++    
Sbjct: 225 FDAFVGKNIRTWTILLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNAR 284

Query: 63  KLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKE 122
           KLFD+MP++N  SWNS++ G      + +A  +F+QMP+R+ VSW+V+ISG+       E
Sbjct: 285 KLFDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWE 344

Query: 123 ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182
           A  +F +M      P+ +I V +LSA   L  L+    +     K   + D ++ +A+++
Sbjct: 345 AWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILN 404

Query: 183 MYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSIS 242
            Y + GS+DLAM  F +  +++  ++T+ I   A  G   +A +L+E +  + ++  +  
Sbjct: 405 AYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVATKT-- 462

Query: 243 YIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM 302
             A+++A + +G ++K    F  + +     P +  +  ++    + G+L+EA++    M
Sbjct: 463 --AMMTAYAQVGRIQKARLIFDEILN-----PNVVAWNAIIAGYTQNGMLKEAKDLFQKM 515

Query: 303 PMKPDNVIWGTLLGA 317
           P+K ++  W  ++  
Sbjct: 516 PVK-NSASWAAMIAG 529



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 163/335 (48%), Gaps = 34/335 (10%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDV 74
            ++I  ++ CGR+ DA  +++   +  V +  +M+  Y + G I +   +FD++   N V
Sbjct: 431 TTMIAAFAQCGRLDDAIQLYERVPEQTVATKTAMMTAYAQVGRIQKARLIFDEILNPNVV 490

Query: 75  SWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD 134
           +WN+I+ G  + G + +A  +F +MP ++  SW  +I+GF QN   +EAL L  E+    
Sbjct: 491 AWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSG 550

Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
             P+ +   S LSACA +G ++ G  ++S   K   + +S +   LI MYAKCG+++   
Sbjct: 551 SVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGS 610

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMN-------------------------------GHSIE 223
            VF +   KD  ++ S I GL+ N                               GH   
Sbjct: 611 HVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEV 670

Query: 224 AFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMV 283
           A +LF +M ++GI P+ ++  ++LSAC +LG ++ G   FH++    G    L     ++
Sbjct: 671 ALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLG-EQFHALIFKLGFDTFLFVGNSLI 729

Query: 284 DLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
            +  + G  E+       MP + D + W  +L  C
Sbjct: 730 TMYFKCG-YEDGFCVFEEMP-EHDLITWNAVLVGC 762



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 142/314 (45%), Gaps = 41/314 (13%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           K +    +F  N+ IQ     GRV +AR VF+E    DVVSWNSMINGY +NG++ E   
Sbjct: 164 KETPQTHLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARL 223

Query: 64  LFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEA 123
           LFD    +N  +W  +L G  + G +++A  VF  M +R++VSW  +ISG+ QNG  K A
Sbjct: 224 LFDAFVGKNIRTWTILLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNA 283

Query: 124 LALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDM 183
             LF EM     E N A   S+++                                    
Sbjct: 284 RKLFDEMP----EKNVASWNSVVTG----------------------------------- 304

Query: 184 YAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISY 243
           Y  C  +  A ++F    +++  ++   I G        EA+++F  M      PD   +
Sbjct: 305 YCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIF 364

Query: 244 IAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP 303
           + VLSA + L  +E        +    G + ++   + +++   R G L+ A +F  +MP
Sbjct: 365 VVVLSAITGLDDLEL-IGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMP 423

Query: 304 MKPDNVIWGTLLGA 317
            + +   W T++ A
Sbjct: 424 ER-NEYSWTTMIAA 436



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 81/158 (51%), Gaps = 13/158 (8%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++ K  F   +FV NSLI  Y  CG   D   VF+E  + D+++WN+++ G  +NG   E
Sbjct: 712 LIFKLGFDTFLFVGNSLITMYFKCG-YEDGFCVFEEMPEHDLITWNAVLVGCAQNGLGKE 770

Query: 61  GLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRS-----LVSWVVLI 111
            +K+F++M       + +S+  +L      G VD+    FN M ++      +  +  ++
Sbjct: 771 AIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMV 830

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
               + G   EA AL   ++++ ++P+S I  +LL AC
Sbjct: 831 DLLGRAGYLSEAEAL---IENMPVKPDSVIWEALLGAC 865


>gi|357450099|ref|XP_003595326.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484374|gb|AES65577.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 740

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 197/467 (42%), Positives = 297/467 (63%), Gaps = 20/467 (4%)

Query: 47  SMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS 106
           S++N Y + G++     +FD++ + +  +WN IL    R  S       F+         
Sbjct: 292 SLLNFYAKYGKMCVSRYIFDRINEPDLATWNVILNAYARSSSYHSYSNSFDD-------- 343

Query: 107 WVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQ 166
                + F+      E+L LFR+MQ + + PN   +V+L+SAC+ LGA+  G WV+ ++ 
Sbjct: 344 -----ADFSL-----ESLYLFRDMQVIGIRPNEVTIVALISACSNLGAVSQGFWVHCFVL 393

Query: 167 KKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY--GDKDVSAYTSAIFGLAMNGHSIEA 224
           +  IK++  +  A +DMY+KCG ++LA QVF      D+D   YT+ I G A++G+  +A
Sbjct: 394 RNKIKMNRFVGTAFVDMYSKCGCLNLACQVFDKMPENDRDSFCYTAMIGGFAVHGYGNQA 453

Query: 225 FELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVD 284
            EL+  MK KG+ PDS +++  + ACSH+G VE+G   F SM +VHG++P+L+HY C++D
Sbjct: 454 LELYRKMKFKGLVPDSATFVVTMFACSHVGLVEEGLEIFKSMKEVHGVEPKLEHYGCLID 513

Query: 285 LLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGR 344
           LLGRAG L+EAE ++A MPMKP+ V+W +LLGA R+H N  +G+     LIE +    G 
Sbjct: 514 LLGRAGRLKEAEEWLADMPMKPNAVLWRSLLGAARIHGNLGVGEVALTKLIELEPETSGN 573

Query: 345 YILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEI 404
           Y+LLSN+Y    +  + + VRK M+   + + PG SL+E+ G +HEFL GDRSH  ++EI
Sbjct: 574 YVLLSNMYASVGRVNDVKRVRKLMKHHGVNKLPGFSLVEIKGAMHEFLTGDRSHPFSKEI 633

Query: 405 YQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRI 464
           Y    EI  +++ YG+   T   +FD+EEE+KE V+ YHSE+LA+AF LI +     IRI
Sbjct: 634 YLKIAEINSRLEEYGHKARTSEALFDLEEEDKEGVLSYHSERLAIAFALIASPSSLAIRI 693

Query: 465 VKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           +KN+R+C DCH+  KL+S  + R+I +RDR  +HHF+DGSCSCL+YW
Sbjct: 694 IKNLRVCGDCHAFTKLISVAYHREIIVRDRNRFHHFKDGSCSCLDYW 740



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 110/243 (45%), Gaps = 59/243 (24%)

Query: 8   AYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEI--------- 58
            +D FV+ SL+ FY+  G++  +R++FD  ++ D+ +WN ++N Y R+            
Sbjct: 284 PFDNFVQASLLNFYAKYGKMCVSRYIFDRINEPDLATWNVILNAYARSSSYHSYSNSFDD 343

Query: 59  ----LEGLKLFDKM------PQ----------------------------RNDVSWNSIL 80
               LE L LF  M      P                             RN +  N  +
Sbjct: 344 ADFSLESLYLFRDMQVIGIRPNEVTIVALISACSNLGAVSQGFWVHCFVLRNKIKMNRFV 403

Query: 81  GGLV-----RFGSVDDACRVFNQMPK--RSLVSWVVLISGFAQNGRPKEALALFREMQSL 133
           G        + G ++ AC+VF++MP+  R    +  +I GFA +G   +AL L+R+M+  
Sbjct: 404 GTAFVDMYSKCGCLNLACQVFDKMPENDRDSFCYTAMIGGFAVHGYGNQALELYRKMKFK 463

Query: 134 DLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC---IKLDSILCAALIDMYAKCGSI 190
            L P+SA  V  + AC+ +G ++ G  ++  +++      KL+   C  LID+  + G +
Sbjct: 464 GLVPDSATFVVTMFACSHVGLVEEGLEIFKSMKEVHGVEPKLEHYGC--LIDLLGRAGRL 521

Query: 191 DLA 193
             A
Sbjct: 522 KEA 524



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 90/207 (43%), Gaps = 25/207 (12%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDE--SDDLDVVSWNSMINGYVRNGEI 58
            V++N    + FV  + +  YS CG +  A  VFD+   +D D   + +MI G+  +G  
Sbjct: 391 FVLRNKIKMNRFVGTAFVDMYSKCGCLNLACQVFDKMPENDRDSFCYTAMIGGFAVHGYG 450

Query: 59  LEGLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQM-------PKRSLVSW 107
            + L+L+ KM  +    +  ++   +      G V++   +F  M       PK  L  +
Sbjct: 451 NQALELYRKMKFKGLVPDSATFVVTMFACSHVGLVEEGLEIFKSMKEVHGVEPK--LEHY 508

Query: 108 VVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK 167
             LI    + GR KEA     +M    ++PN+ +  SLL A    G L  G    +    
Sbjct: 509 GCLIDLLGRAGRLKEAEEWLADM---PMKPNAVLWRSLLGAARIHGNLGVGEVALT---- 561

Query: 168 KCIKLDSILCA---ALIDMYAKCGSID 191
           K I+L+         L +MYA  G ++
Sbjct: 562 KLIELEPETSGNYVLLSNMYASVGRVN 588


>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 200/469 (42%), Positives = 305/469 (65%), Gaps = 4/469 (0%)

Query: 47  SMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS 106
           S+I+ YV+ G I +  KLFDKM  R+  SWN+++ G ++ G +  A  +F +M  R++VS
Sbjct: 147 SLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVS 206

Query: 107 WVVLISGFAQNGRPKEALALFREM--QSLDLEPNSAILVSLLSACAQLGALDYGNWVYSY 164
           W  +ISG+ QNG  ++AL LF EM     +++PN   +VS+L ACAQ  AL+ G  ++ +
Sbjct: 207 WTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDF 266

Query: 165 IQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH--SYGDKDVSAYTSAIFGLAMNGHSI 222
                + L+S +  AL  MYAKC S+  A   F   +   K++ A+ + I   A +G  +
Sbjct: 267 ANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGV 326

Query: 223 EAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACM 282
           EA  +FENM   G+ PD+++++ +LS CSH G ++ G  +F+ M  +H ++P ++HYAC+
Sbjct: 327 EAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACV 386

Query: 283 VDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD 342
           VDLLGRAG L EA+  I+ MPM+    +WG LL ACR HRN E+ +     L   + ++ 
Sbjct: 387 VDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNS 446

Query: 343 GRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQ 402
           G Y+LLSN+Y E    E  +++R  ++ + +K++PGCS IE++G  H F+  D+SH + +
Sbjct: 447 GNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAK 506

Query: 403 EIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVI 462
           EIY+F E + +KIK  GY  +T  V+ DI EEEKE  +  HSEKLA+AFGL+ T+PG V+
Sbjct: 507 EIYKFLEALPEKIKMAGYIPDTSFVLHDISEEEKEYNLTTHSEKLAIAFGLLNTRPGVVL 566

Query: 463 RIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           R+ KN+RIC DCH+A K +SK+++R+I +RD   +H F+DGSCSC +YW
Sbjct: 567 RVTKNLRICGDCHAATKFISKIYEREIIVRDLNRFHCFKDGSCSCGDYW 615



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 5/152 (3%)

Query: 124 LALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDM 183
           L  +  M  L L  ++  L  +L +CA L  +  G  V+    +  ++ D  + A+LIDM
Sbjct: 92  LEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDM 151

Query: 184 YAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISY 243
           Y KCG I  A ++F     +D++++ + I G    G    A +LFE M+ + I    +S+
Sbjct: 152 YVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNI----VSW 207

Query: 244 IAVLSACSHLGWVEKGFYYFHSMF-DVHGIKP 274
            A++S  +  G+ E+    F  M  D   +KP
Sbjct: 208 TAMISGYTQNGFAEQALGLFDEMLQDGSEMKP 239


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/542 (39%), Positives = 310/542 (57%), Gaps = 39/542 (7%)

Query: 9    YDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM 68
            YD  +       Y    R+  A  VF++  +     WN MI G+  +G  L  L+L+ KM
Sbjct: 750  YDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKM 809

Query: 69   PQR--------------------------------------NDVSWNSILGGL-VRFGSV 89
             ++                                      ND+  ++ L  +  + G +
Sbjct: 810  MEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDI 869

Query: 90   DDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
            + A  VF++M  R LVSW  +ISG+A NG   E L  F  M+S  + PN   ++S+L AC
Sbjct: 870  EAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLAC 929

Query: 150  AQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYT 209
              LGAL  G W +SY+ +   + D ++  A++DMY+KCGS+DLA  +F     KD+  ++
Sbjct: 930  GNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWS 989

Query: 210  SAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDV 269
            + I    ++GH  +A +LF+ M   G+ P  +++  VLSACSH G +E+G  YF  M + 
Sbjct: 990  AMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEE 1049

Query: 270  HGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQR 329
              I  +L +YACMVDLLGRAG L EA + I +MP++PD  IWG+LLGACR+H N ++ ++
Sbjct: 1050 FVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEK 1109

Query: 330  IGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVH 389
            I + L   D  H G ++LLSNIY    +    E+VRK M +R   +  G SL+E D  VH
Sbjct: 1110 IADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQGFSLVEYDNQVH 1169

Query: 390  EFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLAL 449
            +F  GDRSH + +++Y   EE+   +K+ GY   T  V+ DIEEE KE  + YHSE+LA+
Sbjct: 1170 KFGVGDRSHPQWEKLYAKLEELAAPMKHLGYVPLTDFVLHDIEEEAKEAALSYHSERLAI 1229

Query: 450  AFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLE 509
            AFGLI T PG+ +RI KN+RIC DCH+A+KL+SK+  R I +RD   +H FEDG CSC +
Sbjct: 1230 AFGLINTSPGTTLRITKNLRICGDCHNAIKLISKIVNRVILVRDMHRFHRFEDGVCSCGD 1289

Query: 510  YW 511
            YW
Sbjct: 1290 YW 1291



 Score =  270 bits (690), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 148/451 (32%), Positives = 252/451 (55%), Gaps = 40/451 (8%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V++  F  D+ + NSL+  Y+  G  + A  +F +  + DV+SW++MI  Y  N    E
Sbjct: 231 LVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANE 290

Query: 61  GLKLFDKMPQR----NDVS-------------------------W----------NSILG 81
            L LF +M ++    N V+                         W           +++ 
Sbjct: 291 ALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALID 350

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
             ++    D+A  +F ++PK+ +VSWV L+SG+AQNG   +++ +FR M S  ++P++  
Sbjct: 351 MYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVA 410

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           +V +L+A ++LG       ++ Y+ +     +  + A+LI++Y+KCGS+  A+++F    
Sbjct: 411 VVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMI 470

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENM-KSKGISPDSISYIAVLSACSHLGWVEKGF 260
            +DV  ++S I    ++G   EA E+F+ M K+  + P++++++++LSACSH G VE+G 
Sbjct: 471 VRDVVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGL 530

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
             F  M   + ++P+ +H+  MVDLLGR G L +A + I  MP+     +WG LLGACR+
Sbjct: 531 KIFDRMVHDYQLRPDSEHFGIMVDLLGRIGQLGKAMDIINRMPIPAGPHVWGALLGACRI 590

Query: 321 HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS 380
           H N EMG+     L   D +H G YILLSNIY    K +N  E+R  +++R +K+  G S
Sbjct: 591 HHNIEMGEAAAKNLFWLDPSHAGYYILLSNIYAVDGKWDNVAELRTRIKERGLKKMFGQS 650

Query: 381 LIELDGVVHEFLAGDRSHEKTQEIYQFWEEI 411
           ++E+ G VH FLA DR H  +Q+IY+   ++
Sbjct: 651 MVEVRGGVHSFLASDRFHPDSQKIYELLRKL 681



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 111/380 (29%), Positives = 178/380 (46%), Gaps = 42/380 (11%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM- 68
           D+FV ++L++ YS CG++ +A  VF+E    D V W SM+ GY +N +  E L LF +M 
Sbjct: 138 DMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMV 197

Query: 69  -------------------PQRNDVSWNSILGGLV--------------------RFGSV 89
                               Q  +V   S + GLV                    + G  
Sbjct: 198 MMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCE 257

Query: 90  DDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
             A  +F++MP++ ++SW  +I+ +A N    EAL LF EM     EPNS  +VS L AC
Sbjct: 258 KIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQAC 317

Query: 150 AQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYT 209
           A    L+ G  ++     K  +LD  +  ALIDMY KC   D A+ +F     KDV ++ 
Sbjct: 318 AVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWV 377

Query: 210 SAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDV 269
           + + G A NG + ++  +F NM S GI PD+++ + +L+A S LG  ++     H     
Sbjct: 378 ALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQAL-CLHGYVVR 436

Query: 270 HGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQR 329
            G    +   A +++L  + G L +A      M ++ D VIW +++ A  +H        
Sbjct: 437 SGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVR-DVVIWSSMIAAYGIHGRGGEALE 495

Query: 330 IGNMLIESDQNHDGRYILLS 349
           I + ++++          LS
Sbjct: 496 IFDQMVKNSTVRPNNVTFLS 515



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 164/358 (45%), Gaps = 48/358 (13%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V K    +D F    L   Y+ C  ++ AR VFDE+   +V  WNS +  Y R  +  E 
Sbjct: 27  VFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREKQWEET 86

Query: 62  LKLFDKM-----------------------------------PQRNDVSWNSILGG--LV 84
           L+LF  M                                    ++ND   + +  G  LV
Sbjct: 87  LRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMFVGSALV 146

Query: 85  RF----GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD---LEP 137
                 G + +A +VF +  +   V W  +++G+ QN  P+EALALF +M  +D   L+P
Sbjct: 147 ELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDP 206

Query: 138 NSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVF 197
               LVS++SACAQL  +  G+ V+  + ++    D  L  +L+++YAK G   +A  +F
Sbjct: 207 --VTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLF 264

Query: 198 HSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVE 257
               +KDV ++++ I   A N  + EA  LF  M  K   P+S++ ++ L AC+    +E
Sbjct: 265 SKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLE 324

Query: 258 KGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
           +G    H +    G + +      ++D+  +    +EA +    +P K D V W  LL
Sbjct: 325 EG-KKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLP-KKDVVSWVALL 380



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 89/173 (51%), Gaps = 12/173 (6%)

Query: 2    VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
            V++  F +D+ V  +++  YS CG +  AR +FDE+   D+V W++MI  Y  +G   + 
Sbjct: 945  VIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKA 1004

Query: 62   LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPK-----RSLVSWVVLIS 112
            + LFD+M +     + V++  +L      G +++    F  M +     R L ++  ++ 
Sbjct: 1005 IDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVD 1064

Query: 113  GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
               + G+  EA+ L   ++++ +EP+++I  SLL AC     LD    +  ++
Sbjct: 1065 LLGRAGQLSEAVDL---IENMPVEPDASIWGSLLGACRIHNNLDLAEKIADHL 1114



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 64/146 (43%), Gaps = 2/146 (1%)

Query: 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFE 229
           ++ DS +      MY     ID A  VF    +     +   I G A +G  + + EL+ 
Sbjct: 748 LQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYS 807

Query: 230 NMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRA 289
            M  KG+ PD  ++   L +C+ L  +++G    H      G   +L   A +VD+  + 
Sbjct: 808 KMMEKGLKPDKFAFPFALKSCAGLSDLQRG-KVIHQHLVCCGCSNDLFVDAALVDMYAKC 866

Query: 290 GLLEEAENFIASMPMKPDNVIWGTLL 315
           G +E A      M ++ D V W +++
Sbjct: 867 GDIEAARLVFDKMAVR-DLVSWTSMI 891



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 86/206 (41%), Gaps = 19/206 (9%)

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
           +LV L  AC    ++   + ++S + K  I  D+     L  +YAKC S+  A +VF   
Sbjct: 6   VLVDLFQACNNGRSV---SQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDET 62

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMK-SKGISPDSISYIAVLSACSHLGWVEKG 259
              +V  + S +          E   LF  M  + G +PD+ +    L AC+ L  +E G
Sbjct: 63  PHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELG 122

Query: 260 FYYFHSMFDVHGIKPELDHY-------ACMVDLLGRAGLLEEAENFIASMPMKPDNVIWG 312
                    +HG   + D         + +V+L  + G + EA         +PD V+W 
Sbjct: 123 KV-------IHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEF-QRPDTVLWT 174

Query: 313 TLLGACRVHRNAEMGQRIGNMLIESD 338
           +++   + + + E    + + ++  D
Sbjct: 175 SMVTGYQQNNDPEEALALFSQMVMMD 200


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/549 (38%), Positives = 318/549 (57%), Gaps = 40/549 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           VK   A    V   L+  YS CG +  A+++FD  D+ D+V++N++I+GY  NG +   +
Sbjct: 239 VKCGLAEHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSV 298

Query: 63  KLFDKMPQRNDVSWNSILGGLV-------------------------------------- 84
           +LF ++        +S L  ++                                      
Sbjct: 299 ELFKELTASGWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLY 358

Query: 85  -RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
            R   ++ A  +F+ M ++++ SW  +ISG+AQNG  + A+ALF+ MQ L+++PN   + 
Sbjct: 359 CRLNDMESARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITIS 418

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           S LSACA LGAL  G WV+  I K+ ++L+  +  ALIDMYAKCGSI  A  +F    +K
Sbjct: 419 STLSACAHLGALSLGKWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNK 478

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           +V ++ + I G  ++G   EA +L+++M    I P S ++++V+ ACSH G V++G   F
Sbjct: 479 NVVSWNAMISGYGLHGQGAEALKLYKDMLDARILPTSSTFLSVIYACSHGGLVDEGQKVF 538

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNV-IWGTLLGACRVHR 322
             M + + I P ++H  CMVDLLGRAG L EA   I+  P       +WG LLGAC VH+
Sbjct: 539 RVMTNEYRITPGIEHCTCMVDLLGRAGKLNEALELISEFPQSAIGPGVWGALLGACMVHK 598

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           N+++ +     L E D  + G Y+LLSN+Y        A  VR+  + RK+ + PGC+LI
Sbjct: 599 NSDLAKLASQKLFELDSENAGYYVLLSNLYTSKKHYSEAAVVRQEAKTRKLVKTPGCTLI 658

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E+    H F+AGD  H +++ IY + E +  K+   GY   T + ++D+EEEEKE ++  
Sbjct: 659 EIGDRPHVFMAGDHLHPQSEAIYSYLERLTAKMIEAGYQPVTEAALYDVEEEEKEHMVKV 718

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSEKLA+AFGL+ T+PG+ IRI+KN+R+C DCH+A K +SKV +R I +RD   +HHF D
Sbjct: 719 HSEKLAIAFGLLSTEPGTEIRIIKNLRVCLDCHNATKFISKVTQRLIVVRDASRFHHFRD 778

Query: 503 GSCSCLEYW 511
           G CSC +YW
Sbjct: 779 GVCSCGDYW 787



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 109/244 (44%), Gaps = 40/244 (16%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VVK     D  V  +L   Y     +  AR +FD   +  + SWN+MI+GY +NG     
Sbjct: 339 VVKARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYAQNGLTEMA 398

Query: 62  LKLFDKMP----QRNDVSWNSI------LGGL---------------------------- 83
           + LF  M     Q N ++ +S       LG L                            
Sbjct: 399 VALFQLMQELNVQPNPITISSTLSACAHLGALSLGKWVHRIISKEKLELNVYVMTALIDM 458

Query: 84  -VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + GS+ +A  +F++M  +++VSW  +ISG+  +G+  EAL L+++M    + P S+  
Sbjct: 459 YAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALKLYKDMLDARILPTSSTF 518

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI-LCAALIDMYAKCGSIDLAMQVFHSYG 201
           +S++ AC+  G +D G  V+  +  +      I  C  ++D+  + G ++ A+++   + 
Sbjct: 519 LSVIYACSHGGLVDEGQKVFRVMTNEYRITPGIEHCTCMVDLLGRAGKLNEALELISEFP 578

Query: 202 DKDV 205
              +
Sbjct: 579 QSAI 582



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 84/166 (50%), Gaps = 5/166 (3%)

Query: 90  DDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALF-REMQSLDLEPNSAILVSLLSA 148
           DDA +VF+ +P    + W  L++G   +    EAL  F R + +  + P+S  L S L A
Sbjct: 166 DDARKVFDTVPSPDTILWNTLLAGLPGS----EALEAFVRMVDAGRVRPDSTTLASSLRA 221

Query: 149 CAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAY 208
            A+   +  G  V+ Y  K  +     +   L+ +Y+KCG +D A  +F    + D+ AY
Sbjct: 222 AAEASHMAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAY 281

Query: 209 TSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
            + I G ++NG    + ELF+ + + G  P+S + +AV+   S  G
Sbjct: 282 NALISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPVYSPFG 327



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 79/158 (50%), Gaps = 11/158 (6%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++ K     +V+V  +LI  Y+ CG + +AR +FD  D+ +VVSWN+MI+GY  +G+  E
Sbjct: 439 IISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAE 498

Query: 61  GLKLF-DKMPQR---NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLI 111
            LKL+ D +  R      ++ S++      G VD+  +VF  M     ++        ++
Sbjct: 499 ALKLYKDMLDARILPTSSTFLSVIYACSHGGLVDEGQKVFRVMTNEYRITPGIEHCTCMV 558

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
               + G+  EAL L  E     + P   +  +LL AC
Sbjct: 559 DLLGRAGKLNEALELISEFPQSAIGPG--VWGALLGAC 594


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/555 (38%), Positives = 330/555 (59%), Gaps = 50/555 (9%)

Query: 7   FAY--DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKL 64
           F Y  D+FV ++LI  YS CG++ DAR VFDE    ++VSW SMI GY  NG  L+ + L
Sbjct: 105 FGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSL 164

Query: 65  F-DKMPQRND---------VSWNSILGGLVRF---------------------------- 86
           F D +   ND         +   S++    R                             
Sbjct: 165 FKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTL 224

Query: 87  ---------GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM-QSLDLE 136
                    G V  A ++F+Q+  +  VS+  ++S +AQ+G   EA  +FR + ++  + 
Sbjct: 225 LDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVT 284

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
            N+  L ++L A +  GAL  G  ++  + +  ++ D I+  ++IDMY KCG ++ A + 
Sbjct: 285 FNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKA 344

Query: 197 FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWV 256
           F    +K+V ++T+ I G  M+GH+ +A ELF  M   G+ P+ I++++VL+ACSH G  
Sbjct: 345 FDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLH 404

Query: 257 EKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLG 316
            +G+ +F++M    G++P L+HY CMVDLLGRAG L++A + I  M MKPD++IW +LL 
Sbjct: 405 VEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLA 464

Query: 317 ACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRA 376
           ACR+H+N E+ +     L E D ++ G Y+LLS+IY +  + ++ E VR  M+ R + + 
Sbjct: 465 ACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKP 524

Query: 377 PGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEK 436
           PG SL+EL+G VH FL GD  H + ++IY+F  E+ +K+   GY   T SV  D++EEEK
Sbjct: 525 PGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEK 584

Query: 437 ETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKH 496
           E  +  HSEKLA+AFG++ T PGS + +VKN+R+CSDCH+ +KL+SK+  R+  +RD K 
Sbjct: 585 EMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKR 644

Query: 497 YHHFEDGSCSCLEYW 511
           +HHF+DG CSC +YW
Sbjct: 645 FHHFKDGGCSCGDYW 659



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 86/166 (51%), Gaps = 7/166 (4%)

Query: 95  VFNQ-MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153
           +FN+ + K  + SW  +I+  A++G   EAL  F  M+ L L P  +     + AC+ L 
Sbjct: 31  LFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLF 90

Query: 154 ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIF 213
            +  G   +        + D  + +ALI MY+ CG ++ A +VF     +++ ++TS I 
Sbjct: 91  DIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIR 150

Query: 214 GLAMNGHSIEAFELF------ENMKSKGISPDSISYIAVLSACSHL 253
           G  +NG++++A  LF      EN     +  DS+  ++V+SACS +
Sbjct: 151 GYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRV 196



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 76/157 (48%), Gaps = 12/157 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V++     DV V  S+I  Y  CGRV  AR  FD   + +V SW +MI GY  +G   + 
Sbjct: 313 VIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKA 372

Query: 62  LKLFDKM----PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLIS 112
           L+LF  M     + N +++ S+L      G   +  R FN M  R      L  +  ++ 
Sbjct: 373 LELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVD 432

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
              + G  ++A  L + M+   ++P+S I  SLL+AC
Sbjct: 433 LLGRAGFLQKAYDLIQRMK---MKPDSIIWSSLLAAC 466


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/503 (40%), Positives = 313/503 (62%), Gaps = 36/503 (7%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           + FV+ +L+  Y+ CG +  AR +FDE            +  Y                 
Sbjct: 294 NCFVRTALLDMYAKCGSIGAARRIFDE------------LGAY----------------- 324

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE 129
            RN V+WN+++    R G++D A  +FN MP R++V+W  +I+G+AQNG+   A+ LF+E
Sbjct: 325 -RNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKE 383

Query: 130 M-QSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCG 188
           M  +  L P+   +VS++SAC  LGAL+ GNWV  ++ +  IKL      A+I MY++CG
Sbjct: 384 MITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCG 443

Query: 189 SIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248
           S++ A +VF     +DV +Y + I G A +GH +EA  L   MK  GI PD +++I VL+
Sbjct: 444 SMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLT 503

Query: 249 ACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDN 308
           ACSH G +E+G   F S+ D     P +DHYACMVDLLGR G LE+A+  +  MPM+P  
Sbjct: 504 ACSHAGLLEEGRKVFESIKD-----PAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHA 558

Query: 309 VIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTM 368
            ++G+LL A R+H+  E+G+   N L E + ++ G +ILLSNIY    + ++ E +R+ M
Sbjct: 559 GVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAM 618

Query: 369 RKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVM 428
           +K  +K+  G S +E  G +H+F+  DRSHE++ +IYQ   E+ KK++  GY  +   V+
Sbjct: 619 KKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKKMREAGYIADKSCVL 678

Query: 429 FDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRK 488
            D+EEEEKE ++G HSEKLA+ + L+ ++ G+VIR+VKN+R+C DCH+A+K++SK+  R 
Sbjct: 679 RDVEEEEKEEIVGTHSEKLAICYALLVSEAGAVIRVVKNLRVCWDCHTAIKMISKLEGRV 738

Query: 489 ISIRDRKHYHHFEDGSCSCLEYW 511
           I +RD   +H F DG CSC +YW
Sbjct: 739 IIVRDNNRFHCFNDGLCSCKDYW 761



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 118/355 (33%), Positives = 188/355 (52%), Gaps = 37/355 (10%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLD--VVSWNSMINGYVRNGEIL 59
           V+K     D FV+N++I  Y+  G +  AR VFDE  D +  V  WN+M++GY +     
Sbjct: 121 VLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEG 180

Query: 60  EGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGR 119
           +   LFD MP+RN ++W +++ G  +   ++ A R F+ MP+RS+VSW  ++SG+AQNG 
Sbjct: 181 QAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGL 240

Query: 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
            +E L LF EM +  +EP+    V+++SAC+  G       +   + +K I+L+  +  A
Sbjct: 241 AEEVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTA 300

Query: 180 LIDMYAKCGSIDLAMQVFHSYG--------DKDVSAYT---------------------- 209
           L+DMYAKCGSI  A ++F   G        +  +SAYT                      
Sbjct: 301 LLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVT 360

Query: 210 --SAIFGLAMNGHSIEAFELFENM-KSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
             S I G A NG S  A ELF+ M  +K ++PD ++ ++V+SAC HLG +E G +    +
Sbjct: 361 WNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFL 420

Query: 267 FDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            + + IK  +  +  M+ +  R G +E+A+     M  + D V + TL+     H
Sbjct: 421 TE-NQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATR-DVVSYNTLISGFAAH 473



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 78/151 (51%), Gaps = 7/151 (4%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           + +N     +   N++I  YS CG + DA+ VF E    DVVS+N++I+G+  +G  +E 
Sbjct: 420 LTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEA 479

Query: 62  LKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQN 117
           + L   M     + + V++  +L      G +++  +VF  +   ++  +  ++    + 
Sbjct: 480 INLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKDPAIDHYACMVDLLGRV 539

Query: 118 GRPKEALALFREMQSLDLEPNSAILVSLLSA 148
           G  ++A    R M+ + +EP++ +  SLL+A
Sbjct: 540 GELEDAK---RTMERMPMEPHAGVYGSLLNA 567


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/549 (39%), Positives = 328/549 (59%), Gaps = 40/549 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+ ++F +D+ ++NSL+  Y+ CG +  AR +FDE    D+VSW SMI GY +N    + 
Sbjct: 100 VLNSNFKHDLVIQNSLLFMYARCGSLEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDA 159

Query: 62  LKLFDKM------PQRNDVS----------------------W-----------NSILGG 82
           L LF +M      P    +S                      W           +S++  
Sbjct: 160 LLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDM 219

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             R G + +A  VF+++  ++ VSW  LI+G+A+ G  +EALALF  MQ     P     
Sbjct: 220 YARCGYLGEAMLVFDKLGCKNEVSWNALIAGYARKGEGEEALALFVRMQREGYRPTEFTY 279

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            +LLS+C+ +G L+ G W+++++ K   KL   +   L+ MYAK GSI  A +VF     
Sbjct: 280 SALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVK 339

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
            DV +  S + G A +G   EA + F+ M   GI P+ I++++VL+ACSH   +++G +Y
Sbjct: 340 VDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIEPNDITFLSVLTACSHARLLDEGKHY 399

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F  +   + I+P++ HYA +VDLLGRAGLL++A++FI  MP++P   IWG LLGA ++H+
Sbjct: 400 F-GLMRKYNIEPKVSHYATIVDLLGRAGLLDQAKSFIEEMPIEPTVAIWGALLGASKMHK 458

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           N EMG      + E D ++ G + LL+NIY    + E+  +VRK M+   +K+ P CS +
Sbjct: 459 NTEMGAYAAQRVFELDPSYPGTHTLLANIYASAGRWEDVAKVRKIMKDSGVKKEPACSWV 518

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E++  VH F+A D +H + ++I++ WE++ +KIK  GY  +T  V+  ++++EKE  + Y
Sbjct: 519 EVENSVHVFVANDVAHPQKEKIHKMWEKLNQKIKEIGYVPDTSHVLLFVDQQEKELNLQY 578

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSEKLAL+F L+ T PGS IRI+KNIR+C DCHSA+K VS V KR+I +RD   +HHF D
Sbjct: 579 HSEKLALSFALLNTPPGSTIRIMKNIRVCGDCHSAIKYVSLVVKREIIVRDTNRFHHFCD 638

Query: 503 GSCSCLEYW 511
           G CSC +YW
Sbjct: 639 GFCSCGDYW 647



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 123/223 (55%), Gaps = 4/223 (1%)

Query: 41  DVVSWNSMINGYVRNGEILEG----LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVF 96
           D   +N+++    + G++ EG      + +   + + V  NS+L    R GS++ A R+F
Sbjct: 73  DRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRLF 132

Query: 97  NQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALD 156
           ++MP R +VSW  +I+G+AQN R  +AL LF  M S   EPN   L SL+  C  + + +
Sbjct: 133 DEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYN 192

Query: 157 YGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLA 216
            G  +++   K     +  + ++L+DMYA+CG +  AM VF   G K+  ++ + I G A
Sbjct: 193 CGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYA 252

Query: 217 MNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
             G   EA  LF  M+ +G  P   +Y A+LS+CS +G +E+G
Sbjct: 253 RKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQG 295



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 89/183 (48%), Gaps = 2/183 (1%)

Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
           LEP+  +  +LL  C QLG L  G  V+ ++     K D ++  +L+ MYA+CGS++ A 
Sbjct: 70  LEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGAR 129

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
           ++F     +D+ ++TS I G A N  + +A  LF  M S G  P+  +  +++  C ++ 
Sbjct: 130 RLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMA 189

Query: 255 WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTL 314
               G    H+    +G    +   + +VD+  R G L EA      +  K + V W  L
Sbjct: 190 SYNCG-RQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCK-NEVSWNAL 247

Query: 315 LGA 317
           +  
Sbjct: 248 IAG 250


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/541 (38%), Positives = 306/541 (56%), Gaps = 39/541 (7%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM- 68
           D+ V  S +  YS  G +  ARWVF +    ++VSWN+MI+G VRNG + E   LF ++ 
Sbjct: 265 DILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLV 324

Query: 69  ------------------PQRNDVSWNSILGGLV-------------------RFGSVDD 91
                              Q   ++   IL G                     + GS+  
Sbjct: 325 RSSGGFDLTTIVSLLQGCSQTASLATGKILHGCAIRSFESNLILSTAIVDLYSKCGSLKQ 384

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           A  VFN+M  R++++W  ++ G AQNG  ++AL LF +MQ   +  NS   VSL+ +CA 
Sbjct: 385 ATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAH 444

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVF-HSYGDKDVSAYTS 210
           LG+L  G  ++ ++ +     D +   AL+DMYAKCG I+LA ++F H    KDV  + S
Sbjct: 445 LGSLKRGRSIHGHLFRLGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNS 504

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I G  M+GH  +A  ++  M  +G+ P+  +++++LSACSH   VE+G   F+SM   H
Sbjct: 505 MITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFLSLLSACSHSRLVEQGISLFNSMERDH 564

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
            I+P   HYAC+VDLL RAG  EEA+  I  MP +P   +   LL  CR H+N  +G + 
Sbjct: 565 NIRPIEKHYACLVDLLSRAGRFEEAQALIEKMPFQPGTAVLEALLSGCRTHKNINLGIQT 624

Query: 331 GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHE 390
            + L+  D  + G YI+LSNIY E  + +  + +R  MR R +K+ PG SL+E    VH 
Sbjct: 625 SDKLLALDAMNPGIYIMLSNIYAEARRWDKVDYIRGLMRNRGLKKTPGYSLVETGNWVHT 684

Query: 391 FLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALA 450
           F AGD SH   +EIY F E +   ++  GY  +T  V+ D++EE K  ++  HSE+LA+A
Sbjct: 685 FFAGDNSHPNWEEIYHFLESLRSAVETSGYVPDTSCVLRDVDEEMKVRMLWGHSERLAIA 744

Query: 451 FGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEY 510
           FGL+ T  GS+IRI KN+R+C DCH+  K +SK+ KR+I +RD   +HHF +G CSC +Y
Sbjct: 745 FGLLTTPAGSLIRITKNLRVCGDCHTVTKYISKIVKREIIVRDANRFHHFSNGECSCGDY 804

Query: 511 W 511
           W
Sbjct: 805 W 805



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/369 (26%), Positives = 167/369 (45%), Gaps = 44/369 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++ NS + D FV   L++ YS    +  AR+VFD+      +  N+M+ GY+++G   E 
Sbjct: 55  IITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYLQSGRYRET 114

Query: 62  LKLFDKMPQRN---------------------------------------DVSWNSILGG 82
           L+LF  M  RN                                           +S++  
Sbjct: 115 LELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVEKGMEKNRFVGSSMISF 174

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
           LV+FG + +A RVF+ MP + +V W  +I G+ Q G    A  LF EM    ++P+   +
Sbjct: 175 LVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPITM 234

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            SL+ AC  +G L  G  ++ Y+    +  D ++  + +DMY+K G I+ A  VF+    
Sbjct: 235 TSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPT 294

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           +++ ++ + I G   NG   E+F+LF  +       D  + +++L  CS    +  G   
Sbjct: 295 RNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASLATG-KI 353

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVI-WGTLLGACRVH 321
            H    +   +  L     +VDL  + G L++A  F+ +  MK  NVI W  +L     +
Sbjct: 354 LHGC-AIRSFESNLILSTAIVDLYSKCGSLKQA-TFVFNR-MKDRNVITWTAMLVGLAQN 410

Query: 322 RNAEMGQRI 330
            +AE   R+
Sbjct: 411 GHAEDALRL 419



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 108/229 (47%), Gaps = 41/229 (17%)

Query: 6   SFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLF 65
           SF  ++ +  +++  YS CG ++ A +VF+   D +V++W +M+ G  +NG   + L+LF
Sbjct: 361 SFESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLF 420

Query: 66  DKMPQR----NDVSW----------------NSILGGLVRF------------------- 86
            +M +     N V++                 SI G L R                    
Sbjct: 421 AQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLGFAFDIVNMTALVDMYAKC 480

Query: 87  GSVDDACRVFNQMP-KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
           G ++ A R+F+     + +V W  +I+G+  +G   +A+ ++ +M    L+PN    +SL
Sbjct: 481 GKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFLSL 540

Query: 146 LSACAQLGALDYGNWVYSYIQK-KCIKLDSILCAALIDMYAKCGSIDLA 193
           LSAC+    ++ G  +++ +++   I+      A L+D+ ++ G  + A
Sbjct: 541 LSACSHSRLVEQGISLFNSMERDHNIRPIEKHYACLVDLLSRAGRFEEA 589



 Score = 45.1 bits (105), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 67/161 (41%), Gaps = 5/161 (3%)

Query: 160 WV---YSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLA 216
           WV   ++ I    +  D  +   L+  Y+   S++ A  VF  +         + + G  
Sbjct: 47  WVKSTHAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYL 106

Query: 217 MNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPEL 276
            +G   E  ELF  M+S+ +  DS S    L AC+     E G     S  +  G++   
Sbjct: 107 QSGRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVE-KGMEKNR 165

Query: 277 DHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
              + M+  L + G + EA+     MP K D V W +++G 
Sbjct: 166 FVGSSMISFLVKFGKIGEAQRVFDGMPNK-DVVCWNSIIGG 205


>gi|302791503|ref|XP_002977518.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
 gi|300154888|gb|EFJ21522.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
          Length = 652

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 197/507 (38%), Positives = 313/507 (61%), Gaps = 5/507 (0%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           ++F   SL+  Y   G V+ A  VFD   + ++V+W +M+ GY  +G+++   + FD MP
Sbjct: 146 NLFSWTSLLSAYGRSGDVKAAGRVFDSMPEWNLVAWTAMLTGYSLSGDVVRAKRAFDSMP 205

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE 129
           +R+ ++W ++L      G +     +F +MP+R L+SW  +++   +N   +E+  LF  
Sbjct: 206 ERDLIAWTAMLSAYAFNGHLRYTREIFQRMPERDLISWATMVAALVENDLLEESKELFDR 265

Query: 130 MQ-----SLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMY 184
           M      S  + PN    ++LL AC+ LGAL  G  +++ + ++    D ++  AL++ Y
Sbjct: 266 MPRHCALSKGMTPNRVTFITLLDACSFLGALAEGRKIHAAVAERGFDTDLVVSNALVNFY 325

Query: 185 AKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYI 244
            +CG++  A  VF     +DV +++S I   A  G   EA EL+  M S+G  PD I +I
Sbjct: 326 GRCGALGDAKIVFDGMRRRDVISWSSMISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFI 385

Query: 245 AVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPM 304
           +VL ACS+ G VE    +F S+     ++P L+HYACMVD+LGRAG L +AE+ +  MP 
Sbjct: 386 SVLFACSNSGVVEASGDFFRSIVGDTQVEPTLEHYACMVDVLGRAGKLRDAEDLLRLMPF 445

Query: 305 KPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEV 364
            P  +++ T+L AC+++ + E G+    ++ E D  +   YI L+NIY    + ++A  +
Sbjct: 446 HPGPLLYMTMLSACKLYTDVERGEAAAEVVFELDPENSSPYITLANIYSAAKRPKDAARI 505

Query: 365 RKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVET 424
           RK M +R IK+ PGCS IE+   VHEF+AGD+ H +  EIY   + + +++K  GY  +T
Sbjct: 506 RKLMEERGIKKKPGCSWIEVLDRVHEFIAGDKMHPQRDEIYAEIQRLGRQMKEAGYFQDT 565

Query: 425 RSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKV 484
           + V+ D+EE+EKE ++ YHSEKLA+AFGLI T PG+ +RIVKN+R+CSDCH+A K++SKV
Sbjct: 566 KVVLQDVEEDEKENLLWYHSEKLAIAFGLISTPPGAPLRIVKNLRVCSDCHAATKVISKV 625

Query: 485 FKRKISIRDRKHYHHFEDGSCSCLEYW 511
             R+I +RD   +HHF++G CSC +YW
Sbjct: 626 TGREILVRDTNRFHHFQNGMCSCNDYW 652



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 157/344 (45%), Gaps = 46/344 (13%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D F    ++  Y+  G + +A+ VFD      + SW ++++ +  +G   E   LFD M 
Sbjct: 22  DSFSWGIMLSIYARSGDLSNAKGVFDRMPRWSLGSWTALLSAFALSGHHEEAKTLFDTMQ 81

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE 129
           +R+ ++W  +L  L  F +++DA   F+QMP+R LV+W  +++  A+ G+ + A   F +
Sbjct: 82  ERDLIAWTIMLTVLATFSNIEDAKYHFDQMPERDLVAWTAMLAANAERGQMENARETFDQ 141

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
           M     E N     SLLSA  + G +     V+  +     + + +   A++  Y+  G 
Sbjct: 142 MP----ERNLFSWTSLLSAYGRSGDVKAAGRVFDSMP----EWNLVAWTAMLTGYSLSGD 193

Query: 190 IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMK----------------- 232
           +  A + F S  ++D+ A+T+ +   A NGH     E+F+ M                  
Sbjct: 194 VVRAKRAFDSMPERDLIAWTAMLSAYAFNGHLRYTREIFQRMPERDLISWATMVAALVEN 253

Query: 233 -------------------SKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIK 273
                              SKG++P+ +++I +L ACS LG + +G    H+     G  
Sbjct: 254 DLLEESKELFDRMPRHCALSKGMTPNRVTFITLLDACSFLGALAEG-RKIHAAVAERGFD 312

Query: 274 PELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
            +L     +V+  GR G L +A+     M  + D + W +++ A
Sbjct: 313 TDLVVSNALVNFYGRCGALGDAKIVFDGM-RRRDVISWSSMISA 355



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 161/339 (47%), Gaps = 32/339 (9%)

Query: 25  GRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLV 84
           G V  AR +FD   D D  SW  M++ Y R+G++     +FD+MP+ +  SW ++L    
Sbjct: 6   GCVERARQIFDAIADRDSFSWGIMLSIYARSGDLSNAKGVFDRMPRWSLGSWTALLSAFA 65

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
             G  ++A  +F+ M +R L++W ++++  A     ++A   F +M   DL        +
Sbjct: 66  LSGHHEEAKTLFDTMQERDLIAWTIMLTVLATFSNIEDAKYHFDQMPERDL----VAWTA 121

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           +L+A A+ G ++     +  + ++ +        +L+  Y + G +  A +VF S  + +
Sbjct: 122 MLAANAERGQMENARETFDQMPERNL----FSWTSLLSAYGRSGDVKAAGRVFDSMPEWN 177

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           + A+T+ + G +++G  + A   F++M  +    D I++ A+LSA +  G +      F 
Sbjct: 178 LVAWTAMLTGYSLSGDVVRAKRAFDSMPER----DLIAWTAMLSAYAFNGHLRYTREIFQ 233

Query: 265 SMFDVHGIKPELD--HYACMVDLLGRAGLLEEAENFIASMP--------MKPDNVIWGTL 314
            M       PE D   +A MV  L    LLEE++     MP        M P+ V + TL
Sbjct: 234 RM-------PERDLISWATMVAALVENDLLEESKELFDRMPRHCALSKGMTPNRVTFITL 286

Query: 315 LGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYV 353
           L AC        G++I   + E   + D   +++SN  V
Sbjct: 287 LDACSFLGALAEGRKIHAAVAERGFDTD---LVVSNALV 322



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 79/157 (50%), Gaps = 12/157 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V +  F  D+ V N+L+ FY  CG + DA+ VFD     DV+SW+SMI+ + + G + E 
Sbjct: 306 VAERGFDTDLVVSNALVNFYGRCGALGDAKIVFDGMRRRDVISWSSMISAFAQRGRVDEA 365

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVF-----NQMPKRSLVSWVVLIS 112
           ++L+ +M       +D+ + S+L      G V+ +   F     +   + +L  +  ++ 
Sbjct: 366 MELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQVEPTLEHYACMVD 425

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
              + G+ ++A  L R M      P   + +++LSAC
Sbjct: 426 VLGRAGKLRDAEDLLRLMP---FHPGPLLYMTMLSAC 459



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 66/168 (39%), Gaps = 45/168 (26%)

Query: 183 MYAKCGSIDLAMQVFHSYGDKD-------------------------------VSAYTSA 211
           M+ + G ++ A Q+F +  D+D                               + ++T+ 
Sbjct: 1   MFGRLGCVERARQIFDAIADRDSFSWGIMLSIYARSGDLSNAKGVFDRMPRWSLGSWTAL 60

Query: 212 IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG 271
           +   A++GH  EA  LF+ M+ +    D I++  +L+  +    +E   Y+F  M     
Sbjct: 61  LSAFALSGHHEEAKTLFDTMQER----DLIAWTIMLTVLATFSNIEDAKYHFDQM----- 111

Query: 272 IKPELDHYACMVDLLGRA--GLLEEAENFIASMPMKPDNVIWGTLLGA 317
             PE D  A    L   A  G +E A      MP + +   W +LL A
Sbjct: 112 --PERDLVAWTAMLAANAERGQMENARETFDQMPER-NLFSWTSLLSA 156


>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/526 (39%), Positives = 320/526 (60%), Gaps = 48/526 (9%)

Query: 30  ARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSV 89
           AR +FD   + D+V +NS+  GY R+   LE   LF ++ + + +  N     L++  +V
Sbjct: 84  ARHLFDAMSEPDIVIFNSIARGYSRSTNPLEVFNLFVEILEDDLLPDNYTFPSLLKACAV 143

Query: 90  D--------------------------------------DACR-VFNQMPKRSLVSWVVL 110
                                                  DA R VF+++ +  +V +  +
Sbjct: 144 AKALEEGRQLHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIVEPCVVCYNAM 203

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK--- 167
           I+G+A+  RP EAL+LFREMQ  +L+PN   L+S+LS+CA LG+LD G W++ Y +K   
Sbjct: 204 ITGYARRNRPNEALSLFREMQGKNLKPNEITLLSVLSSCALLGSLDLGKWIHEYAKKHGF 263

Query: 168 -KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFE 226
            K +K+++    ALIDM+AKCGS+D A+ +F +   KD  A+++ I   A +G +  +  
Sbjct: 264 CKYVKVNT----ALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQAENSML 319

Query: 227 LFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLL 286
           +FE M+S+ + PD I+++ +L+ACSH G VE+G  YF  M    GI P + HY  MVDLL
Sbjct: 320 MFERMRSENVQPDEITFLGLLNACSHTGLVEEGREYFSWMVHEFGIVPSIKHYGSMVDLL 379

Query: 287 GRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYI 346
           GRAG LE+A  FI  +P+ P  ++W  LL AC  H N E+ +++   ++E D +H G Y+
Sbjct: 380 GRAGHLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLELAEKVSERILELDDSHGGDYV 439

Query: 347 LLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQ 406
           +LSN+Y    K E  + +RK M+ RK  + PGCS IE++ VVHEF +GD     T ++++
Sbjct: 440 ILSNLYARNKKWEAVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHR 499

Query: 407 FWEEIVKKIKNYGYNVETRSVMF-DIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIV 465
             +E+VK++K  GY  +T  V+  D+ ++EKE  + YHSEKLA+AFGL+ T PG+ IR+V
Sbjct: 500 ALDEMVKELKLAGYVPDTSMVVHADMGDQEKEITLRYHSEKLAIAFGLLNTPPGTTIRVV 559

Query: 466 KNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           KN+R+C DCHSA KL+S +F RK+ +RD + +HHFEDG CSC ++W
Sbjct: 560 KNLRVCRDCHSAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCRDFW 605



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 135/281 (48%), Gaps = 16/281 (5%)

Query: 70  QRNDVSWNSILGGLVRF-------GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKE 122
            + DVS+N+    L+ F        S+  A  +F+ M +  +V +  +  G++++  P E
Sbjct: 58  HQEDVSFNT---KLINFCTESPTESSMSYARHLFDAMSEPDIVIFNSIARGYSRSTNPLE 114

Query: 123 ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182
              LF E+   DL P++    SLL ACA   AL+ G  ++    K  +  +  +C  LI+
Sbjct: 115 VFNLFVEILEDDLLPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGVDDNVYVCPTLIN 174

Query: 183 MYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSIS 242
           MY +C  +D A  VF    +  V  Y + I G A      EA  LF  M+ K + P+ I+
Sbjct: 175 MYTECEDVDAARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKNLKPNEIT 234

Query: 243 YIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM 302
            ++VLS+C+ LG ++ G  + H     HG    +     ++D+  + G L++A +   +M
Sbjct: 235 LLSVLSSCALLGSLDLG-KWIHEYAKKHGFCKYVKVNTALIDMFAKCGSLDDAVSIFENM 293

Query: 303 PMKPDNVIWGTLLGACRVHRNAE----MGQRIGNMLIESDQ 339
             K D   W  ++ A   H  AE    M +R+ +  ++ D+
Sbjct: 294 RYK-DTQAWSAMIVAYANHGQAENSMLMFERMRSENVQPDE 333



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 125/305 (40%), Gaps = 77/305 (25%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           +V+V  +LI  Y+ C  V  AR VFD   +  VV +N+MI GY R     E L LF +M 
Sbjct: 165 NVYVCPTLINMYTECEDVDAARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQ 224

Query: 70  QRN----------DVSWNSILGGL-----------------------------VRFGSVD 90
            +N           +S  ++LG L                              + GS+D
Sbjct: 225 GKNLKPNEITLLSVLSSCALLGSLDLGKWIHEYAKKHGFCKYVKVNTALIDMFAKCGSLD 284

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           DA  +F  M  +   +W  +I  +A +G+ + ++ +F  M+S +++P+    + LL+AC+
Sbjct: 285 DAVSIFENMRYKDTQAWSAMIVAYANHGQAENSMLMFERMRSENVQPDEITFLGLLNACS 344

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG-DKDVSAYT 209
             G ++ G   +S++                                H +G    +  Y 
Sbjct: 345 HTGLVEEGREYFSWM-------------------------------VHEFGIVPSIKHYG 373

Query: 210 SAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS---HLGWVEKGFYYFHSM 266
           S +  L   GH  +A+E  + +    ISP  + +  +L+ACS   +L   EK       +
Sbjct: 374 SMVDLLGRAGHLEDAYEFIDKLP---ISPTPMLWRILLAACSSHNNLELAEKVSERILEL 430

Query: 267 FDVHG 271
            D HG
Sbjct: 431 DDSHG 435



 Score = 47.0 bits (110), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 37/171 (21%), Positives = 76/171 (44%), Gaps = 12/171 (7%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           K+ F   V V  +LI  ++ CG + DA  +F+     D  +W++MI  Y  +G+    + 
Sbjct: 260 KHGFCKYVKVNTALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQAENSML 319

Query: 64  LFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLISGF 114
           +F++M     Q +++++  +L      G V++    F+ M        S+  +  ++   
Sbjct: 320 MFERMRSENVQPDEITFLGLLNACSHTGLVEEGREYFSWMVHEFGIVPSIKHYGSMVDLL 379

Query: 115 AQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
            + G  ++A   +  +  L + P   +   LL+AC+    L+    V   I
Sbjct: 380 GRAGHLEDA---YEFIDKLPISPTPMLWRILLAACSSHNNLELAEKVSERI 427


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/551 (38%), Positives = 331/551 (60%), Gaps = 41/551 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K  +   V+++  LI  Y+ C  + DAR V DE  + +VVSW +MI+GY + G   E 
Sbjct: 36  MIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEA 95

Query: 62  LKLFDKM----PQRNDVSW-----------------------------------NSILGG 82
           L LF +M       N+ ++                                   +S+L  
Sbjct: 96  LHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDM 155

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G + +A RVF+ +P+R +VS   +ISG+AQ G  +EAL LFR +Q   +  N    
Sbjct: 156 YAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTY 215

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S+L+A + L ALD+G  V+S++ +  +    +L  +LIDMY+KCGS+  + ++F S  +
Sbjct: 216 ASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPE 275

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG-ISPDSISYIAVLSACSHLGWVEKGFY 261
           + V ++ + + G + +G   EA ELF+ MK +  + PDS++++AVLS CSH G  ++G  
Sbjct: 276 RTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLE 335

Query: 262 YFHSMFDVH-GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
            F+ M +   G +PE++HY C+VDL GRAG +EEA  FI  MP +P   IWG+LLGACRV
Sbjct: 336 IFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRV 395

Query: 321 HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS 380
           H+N  +G+ +   L+E +  + G Y++LSN+Y    + ++   VR+ M+++ + + PG S
Sbjct: 396 HQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRS 455

Query: 381 LIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVI 440
            IELD  +H F A DRSH + +E++    E+  KIK  GY  E   V++D+++E+KE ++
Sbjct: 456 WIELDQTLHTFHASDRSHPRKEEVFAKVRELSIKIKEAGYVPELSCVLYDVDDEQKEKIL 515

Query: 441 GYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF 500
             HSEKLALAFGLICT  G+ +RI+KN+RIC DCH+  K +S+V+ R++S+RD+  +HH 
Sbjct: 516 QGHSEKLALAFGLICTPGGTPVRIIKNLRICVDCHNFAKFLSRVYGREVSLRDKNRFHHI 575

Query: 501 EDGSCSCLEYW 511
             G+CSC +YW
Sbjct: 576 VGGTCSCGDYW 586



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 127/256 (49%), Gaps = 42/256 (16%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V+K SF   +FV +SL+  Y+  G++ +AR VFD   + DVVS  ++I+GY + G   E
Sbjct: 136 LVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEE 195

Query: 61  GLKLFDKMPQR----NDVSWNSILGGL--------------------------------- 83
            L LF ++ +     N V++ S+L  L                                 
Sbjct: 196 ALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLID 255

Query: 84  --VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD-LEPNSA 140
              + GS+  + R+F+ MP+R+++SW  ++ G++++G  +EA+ LF+ M+  + ++P+S 
Sbjct: 256 MYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSV 315

Query: 141 ILVSLLSACAQLGALDYGNWVYSYI--QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH 198
             +++LS C+  G  D G  ++  +  QK   + +      ++D++ + G ++ A +   
Sbjct: 316 TFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIK 375

Query: 199 SYGDKDVSAYTSAIFG 214
               +  +A   ++ G
Sbjct: 376 KMPFEPTAAIWGSLLG 391



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 79/162 (48%), Gaps = 1/162 (0%)

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           S+L+ C    A+  G  V++++ K C +    L   LI +Y KC  +  A +V     ++
Sbjct: 15  SVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPER 74

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           +V ++T+ I G +  G++ EA  LF  M   G +P+  ++  VL++C+     + G    
Sbjct: 75  NVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLG-RQI 133

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMK 305
           HS+      +  +   + ++D+  +AG + EA      +P +
Sbjct: 134 HSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPER 175


>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
          Length = 538

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 212/509 (41%), Positives = 306/509 (60%), Gaps = 47/509 (9%)

Query: 45  WNSMINGYVRNGEILEGLKLFDKMPQR-----NDVSWNSILGGLVR-------------- 85
           WN+MI GY R+    E + L+  M  +     N+ ++  +L    R              
Sbjct: 2   WNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHI 61

Query: 86  ---------------------FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEAL 124
                                FG+++ A  +F++   R LVS+  +I G+A+  +P+ AL
Sbjct: 62  IKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESAL 121

Query: 125 ALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVY-SYIQKKCIKLDSILCAALIDM 183
            LF EMQ+ D       LV++LSACA+LGA D G  +Y  YI+      ++IL AA++DM
Sbjct: 122 CLFGEMQNSD----EVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDM 177

Query: 184 YAKCGSIDLAMQVFHSYGD--KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
           YAKCGSID A+++F   G   K    + S I GLA +G    A  +F  + S G+ PD +
Sbjct: 178 YAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEV 237

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
           +++ VL AC H G +E+G   F SMF+ +GIKP+++HY CMVDLLGR G LEEA + +  
Sbjct: 238 TFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQK 297

Query: 302 MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361
           MP + ++VIW  LL ACR H N ++G+  G  L+E +  H  RY+LLSNI  +  + E A
Sbjct: 298 MPFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEA 357

Query: 362 EEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYN 421
            +VRK M    I++ PG S IEL G +H F+A D+SH + +EI    +++  ++K+ GY 
Sbjct: 358 RQVRKVMEDHGIRKPPGWSYIELGGAIHRFVASDKSHPQGKEIELMLKDMAMRLKSAGYV 417

Query: 422 VETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLV 481
             T  VMFDI+EEEKE+V+ YHSEKLALAFGL+   P   IRIVKN+RIC+DCH A KLV
Sbjct: 418 PNTAQVMFDIDEEEKESVVSYHSEKLALAFGLMYCSPTDTIRIVKNLRICADCHKAFKLV 477

Query: 482 SKVFKRKISIRDRKHYHHFEDGSCSCLEY 510
           S+++ R+I++RD   +HHF +GSCSC+++
Sbjct: 478 SEIYGREITVRDTMRFHHFRNGSCSCMDF 506


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/551 (38%), Positives = 331/551 (60%), Gaps = 41/551 (7%)

Query: 2    VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
            ++K  +   V+++  LI  Y+ C  + DAR V DE  + +VVSW +MI+GY + G   E 
Sbjct: 503  MIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEA 562

Query: 62   LKLFDKM----PQRNDVSW-----------------------------------NSILGG 82
            L LF +M       N+ ++                                   +S+L  
Sbjct: 563  LHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDM 622

Query: 83   LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
              + G + +A RVF+ +P+R +VS   +ISG+AQ G  +EAL LFR +Q   +  N    
Sbjct: 623  YAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTY 682

Query: 143  VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
             S+L+A + L ALD+G  V+S++ +  +    +L  +LIDMY+KCGS+  + ++F S  +
Sbjct: 683  ASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPE 742

Query: 203  KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG-ISPDSISYIAVLSACSHLGWVEKGFY 261
            + V ++ + + G + +G   EA ELF+ MK +  + PDS++++AVLS CSH G  ++G  
Sbjct: 743  RTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLE 802

Query: 262  YFHSMFDVH-GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
             F+ M +   G +PE++HY C+VDL GRAG +EEA  FI  MP +P   IWG+LLGACRV
Sbjct: 803  IFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRV 862

Query: 321  HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS 380
            H+N  +G+ +   L+E +  + G Y++LSN+Y    + ++   VR+ M+++ + + PG S
Sbjct: 863  HQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRS 922

Query: 381  LIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVI 440
             IELD  +H F A DRSH + +E++    E+  KIK  GY  E   V++D+++E+KE ++
Sbjct: 923  WIELDQTLHTFHASDRSHPRKEEVFAKVRELSIKIKEAGYVPELSCVLYDVDDEQKEKIL 982

Query: 441  GYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF 500
              HSEKLALAFGLICT  G+ +RI+KN+RIC DCH+  K +S+V+ R++S+RD+  +HH 
Sbjct: 983  QGHSEKLALAFGLICTPGGTPVRIIKNLRICVDCHNFAKFLSRVYGREVSLRDKNRFHHI 1042

Query: 501  EDGSCSCLEYW 511
              G+CSC +YW
Sbjct: 1043 VGGTCSCGDYW 1053



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 127/256 (49%), Gaps = 42/256 (16%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V+K SF   +FV +SL+  Y+  G++ +AR VFD   + DVVS  ++I+GY + G   E
Sbjct: 603 LVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEE 662

Query: 61  GLKLFDKMPQR----NDVSWNSILGGL--------------------------------- 83
            L LF ++ +     N V++ S+L  L                                 
Sbjct: 663 ALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLID 722

Query: 84  --VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD-LEPNSA 140
              + GS+  + R+F+ MP+R+++SW  ++ G++++G  +EA+ LF+ M+  + ++P+S 
Sbjct: 723 MYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSV 782

Query: 141 ILVSLLSACAQLGALDYGNWVYSYI--QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH 198
             +++LS C+  G  D G  ++  +  QK   + +      ++D++ + G ++ A +   
Sbjct: 783 TFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIK 842

Query: 199 SYGDKDVSAYTSAIFG 214
               +  +A   ++ G
Sbjct: 843 KMPFEPTAAIWGSLLG 858



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 94/204 (46%), Gaps = 8/204 (3%)

Query: 109 VLISGFAQNGRPKEALALFREMQSLDLEPNSAILV-------SLLSACAQLGALDYGNWV 161
           +L+S F  N    + L   R+++   LE     L        S+L+ C    A+  G  V
Sbjct: 440 ILLSTFPANSPDLKTLCSNRQLKEALLEMGIQGLEVEFQGYDSVLTECISQTAIREGQRV 499

Query: 162 YSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHS 221
           ++++ K C +    L   LI +Y KC  +  A +V     +++V ++T+ I G +  G++
Sbjct: 500 HAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYA 559

Query: 222 IEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYAC 281
            EA  LF  M   G +P+  ++  VL++C+     + G    HS+      +  +   + 
Sbjct: 560 SEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLG-RQIHSLVIKTSFESHIFVGSS 618

Query: 282 MVDLLGRAGLLEEAENFIASMPMK 305
           ++D+  +AG + EA      +P +
Sbjct: 619 LLDMYAKAGKICEARRVFDGLPER 642


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/555 (38%), Positives = 331/555 (59%), Gaps = 50/555 (9%)

Query: 7   FAY--DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKL 64
           F Y  D+FV ++LI  YS CG++ DAR VFDE    ++VSW SMI GY  NG  L+ + L
Sbjct: 105 FGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSL 164

Query: 65  F-DKMPQRND---------VSWNSILGGLVRF---------------------------- 86
           F D + + ND         +   S++    R                             
Sbjct: 165 FKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTESIHSFVIKRGFDRGVSVGNTL 224

Query: 87  ---------GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM-QSLDLE 136
                    G V  A ++F+Q+  +  VS+  ++S +AQ+G   EA  +FR + +   + 
Sbjct: 225 LDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFDVFRRLIKEKVVT 284

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
            N   L ++L A +  GAL  G  ++  + +  ++ D I+  ++IDMY KCG ++ A   
Sbjct: 285 FNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARLA 344

Query: 197 FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWV 256
           F    +K+V ++T+ I G  M+GH+ +A ELF  M   G+ P+ I++++VL+ACSH G  
Sbjct: 345 FDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLH 404

Query: 257 EKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLG 316
           + G+++F++M    G++P L+HY CMVDLLGRAG L++A + I  M M+PD++IW +LL 
Sbjct: 405 DVGWHWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQKMKMEPDSIIWSSLLA 464

Query: 317 ACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRA 376
           ACR+H+N E+ +     L E D ++ G Y+LLS+IY ++ + ++ E VR TM+ R + + 
Sbjct: 465 ACRIHKNVELAEISVARLFELDPSNCGYYMLLSHIYADSGRWKDVERVRMTMKNRGLVKP 524

Query: 377 PGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEK 436
           PG SL+EL+G VH FL GD  H + ++IY+F  E+ +K+   GY   T SV  D++EEEK
Sbjct: 525 PGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEK 584

Query: 437 ETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKH 496
           E  +  HSEKLA+AFG++ T PGS + +VKN+R+CSDCH+ +KL+SK+  R+  +RD K 
Sbjct: 585 EMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKR 644

Query: 497 YHHFEDGSCSCLEYW 511
           +HHF+DG CSC +YW
Sbjct: 645 FHHFKDGFCSCGDYW 659



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 86/167 (51%), Gaps = 7/167 (4%)

Query: 95  VFNQ-MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153
           +FN+ + K  + SW  +I+  A++G   EAL  F  M+ L L P  +     + AC+ L 
Sbjct: 31  LFNRYVDKTDVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIKACSSLL 90

Query: 154 ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIF 213
            +  G   +        + D  + +ALI MY+ CG ++ A +VF     +++ ++TS I 
Sbjct: 91  DIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIR 150

Query: 214 GLAMNGHSIEAFELF------ENMKSKGISPDSISYIAVLSACSHLG 254
           G  +NG++++A  LF      EN     +  DS+  ++V+SACS + 
Sbjct: 151 GYDLNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVA 197



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 76/157 (48%), Gaps = 12/157 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V++     DV V  S+I  Y  CGRV  AR  FD   + +V SW +MI GY  +G   + 
Sbjct: 313 VIRMGLEDDVIVGTSIIDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAGYGMHGHAAKA 372

Query: 62  LKLFDKM----PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLIS 112
           L+LF  M     + N +++ S+L      G  D     FN M  R      L  +  ++ 
Sbjct: 373 LELFPAMIDSGVRPNYITFVSVLAACSHAGLHDVGWHWFNAMKGRFGVEPGLEHYGCMVD 432

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
              + G  ++A  L ++M+   +EP+S I  SLL+AC
Sbjct: 433 LLGRAGFLQKAYDLIQKMK---MEPDSIIWSSLLAAC 466


>gi|115469684|ref|NP_001058441.1| Os06g0694300 [Oryza sativa Japonica Group]
 gi|53791823|dbj|BAD53889.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|53792844|dbj|BAD53877.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113596481|dbj|BAF20355.1| Os06g0694300 [Oryza sativa Japonica Group]
 gi|125598347|gb|EAZ38127.1| hypothetical protein OsJ_22476 [Oryza sativa Japonica Group]
          Length = 648

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/468 (43%), Positives = 296/468 (63%), Gaps = 2/468 (0%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           NS+I  YV  G++    K+FD+M +++ +SW SI+    R G +  A  VF + P + +V
Sbjct: 181 NSLIGAYVACGDVGAARKVFDEMVEKDVISWTSIVVAYTRSGDMRSAEEVFGRCPVKDMV 240

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           +W  +++G+AQN  P +AL +F  M  L +  +   L   +SACAQLGAL    WV    
Sbjct: 241 AWTAMVTGYAQNAMPVKALEVFDRMAELGMVIDEVSLTGAISACAQLGALRRAAWVQEIA 300

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
           ++     + ++ + L+DMYAKCG ID A +VF+   +K+V  Y+S I GLA +G + EA 
Sbjct: 301 ERTGFGNNVVVGSGLVDMYAKCGLIDEASKVFYGMQEKNVYTYSSMIAGLASHGRASEAI 360

Query: 226 ELFENMKSKG-ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVD 284
            LF+ M ++  + P+ +++I VL+ACSH G V +G YYF  M D +GI P  DHYACMVD
Sbjct: 361 ALFKEMVNRANVEPNHVTFIGVLTACSHAGMVGEGRYYFAQMKDKYGIMPSADHYACMVD 420

Query: 285 LLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGR 344
           LLGRAGL++EA + + SM + P   +WG LLGACR+H  +E+ + +   L + +    G 
Sbjct: 421 LLGRAGLVDEALDLVRSMSVTPHGGVWGALLGACRIHGKSEIAKVVAEHLFKLEPESIGN 480

Query: 345 YILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE-LDGVVHEFLAGDRSHEKTQE 403
           Y+LLSNI     K E   +VR  MRK+++K+ P  SL E  DG+VH+F AGD +H +T E
Sbjct: 481 YVLLSNILASAGKWEEVSKVRILMRKQRLKKDPAVSLFEGRDGLVHQFFAGDNAHPRTHE 540

Query: 404 IYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIR 463
           I +   E+V K+K  GY     S+++D+ +EEKE ++  HSEKLAL+FGL+    G  IR
Sbjct: 541 IKKALLELVAKLKLEGYVPILSSIVYDVNDEEKERLLMGHSEKLALSFGLLTLGSGCTIR 600

Query: 464 IVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           I+KN+RIC DCH  M+LVS+V   +I +RD   +HHF++G CSC  +W
Sbjct: 601 IIKNLRICDDCHLFMQLVSRVESVEIIVRDNMRFHHFKNGECSCGGFW 648


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/551 (38%), Positives = 326/551 (59%), Gaps = 43/551 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +V++ +  DV V  +L + Y  CG  +DAR VF+     DV++WN+MI G+V +G++ E 
Sbjct: 256 IVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEA 315

Query: 62  LKLFDKM------PQRNDVSWNSIL------GGL------------------VRFG---- 87
              F +M      P R   ++ ++L      GGL                  VRFG    
Sbjct: 316 HGTFHRMLEEGVAPDR--ATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALI 373

Query: 88  -------SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
                  S+ DA +VF++MPKR +VSW  L+  +A   +  E+   F++M    ++ N  
Sbjct: 374 NMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKI 433

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
             + +L AC+   AL +G  +++ + K  +  D  +  AL+ MY KCGS++ A++VF   
Sbjct: 434 TYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGM 493

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
             +DV  + + I GL  NG  +EA + +E MKS+G+ P++ +++ VLSAC     VE+G 
Sbjct: 494 SMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSACRVCNLVEEGR 553

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
             F  M   +GI P   HYACMVD+L RAG L EAE+ I ++P+KP   +WG LL ACR+
Sbjct: 554 RQFAFMSKDYGIVPTEKHYACMVDILARAGHLREAEDVILTIPLKPSAAMWGALLAACRI 613

Query: 321 HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS 380
           H N E+G+R     ++ +  + G Y+ LS IY       +  ++RK M++R +K+ PG S
Sbjct: 614 HCNVEIGERAAEHCLKLEPQNAGLYVSLSAIYAAAGMWRDVAKLRKFMKERGVKKEPGRS 673

Query: 381 LIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVI 440
            IE+ G VH F+A D+SH +TQEIY   E + K++K+ GY  +TR VM D+++E KE  +
Sbjct: 674 WIEIAGEVHSFVARDQSHPRTQEIYAELETLKKQMKSLGYVPDTRFVMHDLDDEGKERAV 733

Query: 441 GYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF 500
            +HSEKLA+A+GLI T PG+ IRI KN+R+C+DCH+A K +SK+ KR+I  RD   +HHF
Sbjct: 734 CHHSEKLAIAYGLISTPPGTPIRISKNLRVCTDCHTATKFISKITKREIIARDAHRFHHF 793

Query: 501 EDGSCSCLEYW 511
           ++G CSC +YW
Sbjct: 794 KNGECSCGDYW 804



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 105/346 (30%), Positives = 166/346 (47%), Gaps = 41/346 (11%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           +V++ N+L++ Y+ CG V +AR +FD+  +  VVSWN MI+GY   G   E   LF  M 
Sbjct: 62  NVYITNTLLKLYAHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQ 121

Query: 70  QR--------------------------------------NDVS-WNSILGGLVRFGSVD 90
           Q                                       ND +  N+++    + GSV 
Sbjct: 122 QERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVR 181

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           DA RVF+ M  R  VSW  L   +A++G  +E+L  +  M    + P+    +++LSAC 
Sbjct: 182 DARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACG 241

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
            L AL+ G  ++++I +     D  +  AL  MY KCG+   A +VF     +DV A+ +
Sbjct: 242 SLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNT 301

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I G   +G   EA   F  M  +G++PD  +Y  VLSAC+  G + +G    H+     
Sbjct: 302 MIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARG-KEIHARAAKD 360

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLG 316
           G+  ++     ++++  +AG +++A      MP K D V W TLLG
Sbjct: 361 GLVSDVRFGNALINMYSKAGSMKDARQVFDRMP-KRDVVSWTTLLG 405



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/357 (29%), Positives = 166/357 (46%), Gaps = 47/357 (13%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V++   A D  V N+LI  Y+ CG VRDAR VFD     D VSW ++   Y  +G   E 
Sbjct: 155 VMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEES 214

Query: 62  LKLFDKM------PQR--------------------------------NDVSWNSILGGL 83
           LK +  M      P R                                +DV  ++ L  +
Sbjct: 215 LKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKM 274

Query: 84  -VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
            ++ G+  DA  VF  +  R +++W  +I GF  +G+ +EA   F  M    + P+ A  
Sbjct: 275 YMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATY 334

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            ++LSACA+ G L  G  +++   K  +  D     ALI+MY+K GS+  A QVF     
Sbjct: 335 TTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPK 394

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSH---LGWVEKG 259
           +DV ++T+ +   A     +E+F  F+ M  +G+  + I+Y+ VL ACS+   L W ++ 
Sbjct: 395 RDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKE- 453

Query: 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLG 316
               H+     G+  +L     ++ +  + G +E+A      M M+ D V W TL+G
Sbjct: 454 ---IHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMR-DVVTWNTLIG 506



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 88/178 (49%), Gaps = 8/178 (4%)

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           V LL +C +   L  G  V+ +I +  +K +  +   L+ +YA CGS++ A Q+F  + +
Sbjct: 32  VKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLFDKFSN 91

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSH---LGWVEKG 259
           K V ++   I G A  G + EAF LF  M+ + + PD  +++++LSACS    L W  + 
Sbjct: 92  KSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGRE- 150

Query: 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
               H      G+  +      ++ +  + G + +A     +M  + D V W TL GA
Sbjct: 151 ---IHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASR-DEVSWTTLTGA 204


>gi|356534289|ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Glycine max]
          Length = 591

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/473 (40%), Positives = 296/473 (62%), Gaps = 13/473 (2%)

Query: 52  YVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLI 111
           ++++G  L    L    P  +    NS+L    ++G +  +  +F+Q+ +  L +W  ++
Sbjct: 119 WLQHGPPLHAHVLKFLQPPYDPFVQNSLLNFYAKYGKLCVSRYLFDQISEPDLATWNTML 178

Query: 112 SGFAQNGR-------------PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
           + +AQ+                 EAL LF +MQ   ++PN   LV+L+SAC+ LGAL  G
Sbjct: 179 AAYAQSASHVSYSTSFEDADMSLEALHLFCDMQLSQIKPNEVTLVALISACSNLGALSQG 238

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
            W + Y+ +  +KL+  +  AL+DMY+KCG ++LA Q+F    D+D   Y + I G A++
Sbjct: 239 AWAHGYVLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDELSDRDTFCYNAMIGGFAVH 298

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDH 278
           GH  +A EL+ NMK + + PD  + +  + ACSH G VE+G   F SM  VHG++P+L+H
Sbjct: 299 GHGNQALELYRNMKLEDLVPDGATIVVTMFACSHGGLVEEGLEIFESMKGVHGMEPKLEH 358

Query: 279 YACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338
           Y C++DLLGRAG L+EAE  +  MPMKP+ ++W +LLGA ++H N EMG+     LIE +
Sbjct: 359 YGCLIDLLGRAGRLKEAEERLQDMPMKPNAILWRSLLGAAKLHGNLEMGEAALKHLIELE 418

Query: 339 QNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSH 398
               G Y+LLSN+Y    +  + + VR  M+   + + PG SL+E++G +HEFL GD++H
Sbjct: 419 PETSGNYVLLSNMYASIGRWNDVKRVRMLMKDHGVDKLPGFSLVEINGAMHEFLTGDKAH 478

Query: 399 EKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKP 458
             ++EIY    EI +++  YG+   T  V+FD+EEE+KE  + YHSE+LA+AF LI +  
Sbjct: 479 PFSKEIYSKIGEINRRLLEYGHKPRTSEVLFDVEEEDKEDFLSYHSERLAIAFALIASSS 538

Query: 459 GSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
              IRI+KN+R+C DCH+  KL+S  ++R I +RDR  +HHF+DGSCSCL+YW
Sbjct: 539 SMPIRIIKNLRVCGDCHAITKLISAAYQRDIIVRDRNRFHHFKDGSCSCLDYW 591



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 108/241 (44%), Gaps = 57/241 (23%)

Query: 8   AYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGE---------- 57
            YD FV+NSL+ FY+  G++  +R++FD+  + D+ +WN+M+  Y ++            
Sbjct: 137 PYDPFVQNSLLNFYAKYGKLCVSRYLFDQISEPDLATWNTMLAAYAQSASHVSYSTSFED 196

Query: 58  ---ILEGLKLFDKM------PQ----------------------------RNDVSWNSIL 80
               LE L LF  M      P                             RN++  N  +
Sbjct: 197 ADMSLEALHLFCDMQLSQIKPNEVTLVALISACSNLGALSQGAWAHGYVLRNNLKLNRFV 256

Query: 81  GGLV-----RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDL 135
           G  +     + G ++ AC++F+++  R    +  +I GFA +G   +AL L+R M+  DL
Sbjct: 257 GTALVDMYSKCGCLNLACQLFDELSDRDTFCYNAMIGGFAVHGHGNQALELYRNMKLEDL 316

Query: 136 EPNSAILVSLLSACAQLGALDYGNWVYSY---IQKKCIKLDSILCAALIDMYAKCGSIDL 192
            P+ A +V  + AC+  G ++ G  ++     +     KL+   C  LID+  + G +  
Sbjct: 317 VPDGATIVVTMFACSHGGLVEEGLEIFESMKGVHGMEPKLEHYGC--LIDLLGRAGRLKE 374

Query: 193 A 193
           A
Sbjct: 375 A 375



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 122/274 (44%), Gaps = 18/274 (6%)

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNG-RPKEALALFRE-MQSLDLEPNSAILVSLLSAC 149
           A  +FN +P  +L  +  LIS    +  +   A +L+   +    L+PNS    SL  AC
Sbjct: 55  AFTIFNHIPNPTLFLYNTLISSLTHHSDQIHLAFSLYNHILTHKTLQPNSFTFPSLFKAC 114

Query: 150 AQLGALDYGNWVYSYIQKKC-IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAY 208
           A    L +G  +++++ K      D  +  +L++ YAK G + ++  +F    + D++ +
Sbjct: 115 ASHPWLQHGPPLHAHVLKFLQPPYDPFVQNSLLNFYAKYGKLCVSRYLFDQISEPDLATW 174

Query: 209 TSAIFGLAMNGH-------------SIEAFELFENMKSKGISPDSISYIAVLSACSHLGW 255
            + +   A +               S+EA  LF +M+   I P+ ++ +A++SACS+LG 
Sbjct: 175 NTMLAAYAQSASHVSYSTSFEDADMSLEALHLFCDMQLSQIKPNEVTLVALISACSNLGA 234

Query: 256 VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
           + +G  + H     + +K        +VD+  + G L  A      +  + D   +  ++
Sbjct: 235 LSQG-AWAHGYVLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDELSDR-DTFCYNAMI 292

Query: 316 GACRVHRNAEMGQRIGNMLIESDQNHDGRYILLS 349
           G   VH +      +   +   D   DG  I+++
Sbjct: 293 GGFAVHGHGNQALELYRNMKLEDLVPDGATIVVT 326



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 80/173 (46%), Gaps = 26/173 (15%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V++N+   + FV  +L+  YS CG +  A  +FDE  D D   +N+MI G+  +G   + 
Sbjct: 245 VLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDELSDRDTFCYNAMIGGFAVHGHGNQA 304

Query: 62  LKLFDKMPQRNDVSWNSIL---------GGLVRFGSVDDACRVFNQM-------PKRSLV 105
           L+L+  M   + V   + +         GGL     V++   +F  M       PK  L 
Sbjct: 305 LELYRNMKLEDLVPDGATIVVTMFACSHGGL-----VEEGLEIFESMKGVHGMEPK--LE 357

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
            +  LI    + GR KEA      +Q + ++PN+ +  SLL A    G L+ G
Sbjct: 358 HYGCLIDLLGRAGRLKEAE---ERLQDMPMKPNAILWRSLLGAAKLHGNLEMG 407


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 198/468 (42%), Positives = 299/468 (63%), Gaps = 4/468 (0%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N++I  Y R G+++E  ++FDKMP ++ VSWN+IL G V    +++A  +F +MP RSL+
Sbjct: 317 NALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLL 376

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           +W V+ISG AQNG  +E L LF +M+   LEP        +++C+ LG+LD G  ++S I
Sbjct: 377 TWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLHSQI 436

Query: 166 QKKCIKLDSILCA--ALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIE 223
            +  +  DS L    ALI MY++CG ++ A  VF +    D  ++ + I  LA +GH ++
Sbjct: 437 IQ--LGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVSWNAMIAALAQHGHGVQ 494

Query: 224 AFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMV 283
           A +L+E M  + I PD I+++ +LSACSH G V++G +YF +M   +GI PE DHY+ ++
Sbjct: 495 AIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGRHYFDTMRVCYGITPEEDHYSRLI 554

Query: 284 DLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDG 343
           DLL RAG+  EA+N   SMP +P   IW  LL  C +H N E+G +  + L+E     DG
Sbjct: 555 DLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAGCWIHGNMELGIQAADRLLELMPQQDG 614

Query: 344 RYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQE 403
            YI LSN+Y    + +    VRK MR+R +K+ PGCS IE++ +VH FL  D  H +   
Sbjct: 615 TYISLSNMYAALGQWDEVARVRKLMRERGVKKEPGCSWIEVENMVHVFLVDDAVHPEVHA 674

Query: 404 IYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIR 463
           +Y++ E++V +++  GY  +T+ V+ D+E E+KE  +  HSEKLA+ +G++    G+ IR
Sbjct: 675 VYRYLEQLVHEMRKLGYVPDTKFVLHDMESEQKEYALSTHSEKLAVVYGIMKLPLGATIR 734

Query: 464 IVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           + KN+RIC DCH+A K +SKV  R+I +RDRK +HHF +G CSC  YW
Sbjct: 735 VFKNLRICGDCHNAFKYISKVVDREIIVRDRKRFHHFRNGECSCSNYW 782



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 145/352 (41%), Gaps = 70/352 (19%)

Query: 24  CGRVRDARWVFDESDD--LDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILG 81
           C  +  AR +FDE+     D  +W ++I GYVRN +++   +L + M     V+WN+   
Sbjct: 188 CVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNA--- 244

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
                                       +ISG+   G  +EA  L R M SL ++ +   
Sbjct: 245 ----------------------------MISGYVHRGFYEEAFDLLRRMHSLGIQLDEYT 276

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCA----ALIDMYAKCGSIDLAMQVF 197
             S++SA +  G  + G  V++Y+ +  ++           ALI +Y +CG +  A +VF
Sbjct: 277 YTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVF 336

Query: 198 HSYGDKDVSA-------------------------------YTSAIFGLAMNGHSIEAFE 226
                KD+ +                               +T  I GLA NG   E  +
Sbjct: 337 DKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLK 396

Query: 227 LFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLL 286
           LF  MK +G+ P   +Y   +++CS LG ++ G    HS     G    L     ++ + 
Sbjct: 397 LFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNG-QQLHSQIIQLGHDSSLSVGNALITMY 455

Query: 287 GRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338
            R GL+E A+    +MP   D+V W  ++ A   H +     ++   +++ D
Sbjct: 456 SRCGLVEAADTVFLTMPYV-DSVSWNAMIAALAQHGHGVQAIQLYEKMLKED 506



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 88/377 (23%), Positives = 136/377 (36%), Gaps = 80/377 (21%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++ + F     + N LI  Y     +  AR++FD+    D+V+  +M++ Y   G I   
Sbjct: 22  ILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAATTMLSAYSAAGNIKLA 81

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
            +LF+  P                             M  R  VS+  +I+ F+ +    
Sbjct: 82  HQLFNATP-----------------------------MSIRDTVSYNAMITAFSHSHDGH 112

Query: 122 EALALFREMQSLDLEPNSAILVSLLSA----------CAQL-------GALD-------- 156
            AL LF +M+ L   P+     S+L A          C QL       GAL         
Sbjct: 113 AALQLFVQMKRLGFVPDPFTFSSVLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNAL 172

Query: 157 ---YGNWVYSYIQKKCI---------------KLDSILCAALIDMYAKCGSIDLAMQVFH 198
              Y +   S +   C+               + D      +I  Y +   +  A ++  
Sbjct: 173 MSCYVSCASSPLVNSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLE 232

Query: 199 SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEK 258
              D    A+ + I G    G   EAF+L   M S GI  D  +Y +V+SA S+ G    
Sbjct: 233 GMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNI 292

Query: 259 GFYYFHSMFDVHGIKPELDHYA-----CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGT 313
           G    H+      ++P   H+       ++ L  R G L EA      MP+K D V W  
Sbjct: 293 G-RQVHAYVLRTVVQPS-GHFVLSVNNALITLYTRCGKLVEARRVFDKMPVK-DLVSWNA 349

Query: 314 LLGACRVHRNAEMGQRI 330
           +L  C   R  E    I
Sbjct: 350 ILSGCVNARRIEEANSI 366


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 198/493 (40%), Positives = 310/493 (62%), Gaps = 7/493 (1%)

Query: 24  CGRVRDA---RWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSIL 80
           CGR       R V + S    +   N++I  Y +   ++E  ++FDKMP R+ +SWN++L
Sbjct: 305 CGRQVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVL 364

Query: 81  GGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
            G V    +++A  +F++MP+R++++W V+ISG AQNG  +E L LF +M+S  LEP   
Sbjct: 365 SGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDY 424

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCA--ALIDMYAKCGSIDLAMQVFH 198
                ++AC+ LG+LD G  ++S + +  +  DS L A  ALI MY++CG ++ A  VF 
Sbjct: 425 AFAGAITACSVLGSLDNGQQIHSQVIR--LGHDSGLSAGNALITMYSRCGVVESAESVFL 482

Query: 199 SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEK 258
           +    D  ++ + I  LA +GH ++A ELFE M  + I PD I+++ +L+AC+H G +++
Sbjct: 483 TMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPDRITFLTILTACNHAGLIKE 542

Query: 259 GFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
           G +YF +M   +GI P  DHYA ++DLL RAG+  +A++ I SMP +    IW  LL  C
Sbjct: 543 GRHYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIWEALLAGC 602

Query: 319 RVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPG 378
           R+H N E+G +  + L+E     DG YI+LSN+Y    + +    VR  MR+R +K+ PG
Sbjct: 603 RIHGNMELGIQAADRLLELIPGQDGTYIILSNMYAALGQWDEVARVRLLMRERGVKKEPG 662

Query: 379 CSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKET 438
           CS +E++ +VH FL  D  H + Q +Y + +++V ++K  GY  +T+ V+ D+E E KE 
Sbjct: 663 CSWVEVENMVHVFLVDDARHPEVQAVYTYLQQLVNEMKKLGYVPDTKFVLHDMESEHKEH 722

Query: 439 VIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYH 498
            +  HSEKLA+ +G++    G+ IR+ KN+RIC DCH+A K +SKV +R+I +RDRK +H
Sbjct: 723 SLSTHSEKLAVVYGIMKLPLGATIRVFKNLRICGDCHNAFKYISKVVEREIVVRDRKRFH 782

Query: 499 HFEDGSCSCLEYW 511
           HF++G CSC  YW
Sbjct: 783 HFKNGECSCGNYW 795



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 92/359 (25%), Positives = 148/359 (41%), Gaps = 83/359 (23%)

Query: 13  VKNSLIQFYSVCGR---------VRDARWVFDESDDLDVV--SWNSMINGYVRNGEILEG 61
           V N+L+  Y  C           +  AR VFDE+    +   SW +MI GYVRN +++  
Sbjct: 177 VTNALLSCYVCCASSPLVKSSQLMASARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAA 236

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
            +L D +    DV+WN+++ G VR                                G  +
Sbjct: 237 RELLDGLTYPIDVAWNAMISGYVR-------------------------------RGLYE 265

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACA----QLGALDYGNWVYSYIQKKCI------- 170
           EA   FR M S+ ++ +     SL+SAC     ++G  + G  V+ YI +  +       
Sbjct: 266 EAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPSHHFV 325

Query: 171 ------------KLDSILCA----------------ALIDMYAKCGSIDLAMQVFHSYGD 202
                       K D ++ A                A++  Y     I+ A  +F    +
Sbjct: 326 LSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPE 385

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           ++V  +T  I GLA NG   E  +LF  MKS+G+ P   ++   ++ACS LG ++ G   
Sbjct: 386 RNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNG-QQ 444

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            HS     G    L     ++ +  R G++E AE+   +MP   D+V W  ++ A   H
Sbjct: 445 IHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPYV-DSVSWNAMIAALAQH 502



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/301 (20%), Positives = 119/301 (39%), Gaps = 52/301 (17%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++ + F  + F+ N LI  Y     +  AR +FD+    D+V+  ++++ Y  +G +   
Sbjct: 31  ILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYSSSGNVKLA 90

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
            +LF+  P                             +  R  VS+  +I+ ++      
Sbjct: 91  QQLFNATP-----------------------------LTIRDTVSYNAMITAYSHGNDGH 121

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCA--- 178
            AL LF +M+     P+     S+LSA + +   +    +   +  + IKL ++L     
Sbjct: 122 AALNLFVQMKRYGFLPDPFTFSSVLSALSLIADEERHCQM---LHCEVIKLGTLLIPSVT 178

Query: 179 -ALIDMYAKCGSIDL---------AMQVFHSYGDKDV--SAYTSAIFGLAMNGHSIEAFE 226
            AL+  Y  C S  L         A +VF       +   ++T+ I G   N   + A E
Sbjct: 179 NALLSCYVCCASSPLVKSSQLMASARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARE 238

Query: 227 LFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLL 286
           L + +      P  +++ A++S     G  E+ F  F  M  + GI+ +   Y  ++   
Sbjct: 239 LLDGLT----YPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSM-GIQEDEYTYTSLISAC 293

Query: 287 G 287
           G
Sbjct: 294 G 294



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 6/144 (4%)

Query: 123 ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182
           A A+   + +   +PN+ IL  L++   +   + Y   ++  I K     D +    L+ 
Sbjct: 24  ARAVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKP----DIVARTTLLS 79

Query: 183 MYAKCGSIDLAMQVFHS--YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
            Y+  G++ LA Q+F++     +D  +Y + I   +       A  LF  MK  G  PD 
Sbjct: 80  AYSSSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDP 139

Query: 241 ISYIAVLSACSHLGWVEKGFYYFH 264
            ++ +VLSA S +   E+     H
Sbjct: 140 FTFSSVLSALSLIADEERHCQMLH 163


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/553 (37%), Positives = 319/553 (57%), Gaps = 44/553 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDL-DVVSWNSMINGYVRNGEILEG 61
           V+  F  DV V   ++  Y  C  +  AR +FD    + + V+W++M+  YV    + E 
Sbjct: 247 VRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREA 306

Query: 62  LKLFDKMPQRND------------------------------------------VSWNSI 79
           L+LF ++    D                                          +  N++
Sbjct: 307 LELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTL 366

Query: 80  LGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS 139
           L    + G ++ A R FN+M  R  VS+  +ISG+ QNG  +E L +F EMQ   + P  
Sbjct: 367 LSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEK 426

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
           A L S+L ACA L  L YG+  + Y        D+++C ALIDMYAKCG ID A +VF  
Sbjct: 427 ATLASVLPACAHLAGLHYGSCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDR 486

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
              + + ++ + I    ++G  +EA  LF+NM+S+G+ PD +++I ++SACSH G V +G
Sbjct: 487 MHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFICLISACSHSGLVAEG 546

Query: 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACR 319
            Y+F++M    GI P ++HYACMVDLL RAGL +E  +FI  MP++PD  +WG LL ACR
Sbjct: 547 KYWFNAMTQDFGIIPRMEHYACMVDLLSRAGLFKEVHSFIEKMPLEPDVRVWGALLSACR 606

Query: 320 VHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGC 379
           V++N E+G+ +   + +      G ++LLSN+Y    + ++A +VR T +++  +++PGC
Sbjct: 607 VYKNVELGEGVSKKIQKLGPESTGNFVLLSNMYSAVGRWDDAAQVRFTQKEQGFEKSPGC 666

Query: 380 SLIELDGVVHEFLAGD-RSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKET 438
           S IE+ GVVH FL G  RSH +  +I    +E++ ++K  GY  E+  V  D+EEEEKE 
Sbjct: 667 SWIEISGVVHTFLGGGYRSHPQLTQISNKLDELLVEMKRLGYQAESSYVFQDVEEEEKER 726

Query: 439 VIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYH 498
           V+ YHSEKLA+AFG++   P   I + KN+R+C DCH+A+K +S V KR I++RD   +H
Sbjct: 727 VLLYHSEKLAIAFGILSLSPDKHIIVTKNLRVCGDCHTAIKFISLVTKRDITVRDASRFH 786

Query: 499 HFEDGSCSCLEYW 511
           HF+DG C+C ++W
Sbjct: 787 HFKDGICNCGDFW 799



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 106/357 (29%), Positives = 169/357 (47%), Gaps = 49/357 (13%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGY-VRNGEILEGLKLFDKM 68
           +V+V  +L+ FY+ CG + DA+ VFD+    DVV+WNSMI+G+ +  G   E  +L  +M
Sbjct: 153 NVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQM 212

Query: 69  PQRNDVSWNS---------------------ILGGLVRFGSVDD---------------- 91
             +NDVS NS                     I G  VR G V D                
Sbjct: 213 --QNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQC 270

Query: 92  ---ACRVFNQMP-KRSLVSWVVLISGFAQNGRPKEALALFREMQSL--DLEPNSAI-LVS 144
              A R+F+ M   ++ V+W  ++  +      +EAL LF ++  L  D+   SA+ L +
Sbjct: 271 IDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLAT 330

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           ++  CA L  L  G  ++ Y  K    LD ++   L+ MYAKCG I+ AM+ F+    +D
Sbjct: 331 VIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRD 390

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
             ++T+ I G   NG+S E   +F  M+  GI+P+  +  +VL AC+HL  +  G    H
Sbjct: 391 AVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYG-SCSH 449

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
               + G   +      ++D+  + G ++ A      M  K   V W T++ A  +H
Sbjct: 450 CYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMH-KRGIVSWNTMIIAYGIH 505



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 121/248 (48%), Gaps = 5/248 (2%)

Query: 73  DVSWNSILGGLVRFGSVDDACRVFNQMPKR--SLVSWVVLISGFAQNGRPKEALALFREM 130
           DV +  ++   +    +  A  VF++MP R  ++V W +LI  +A NG  +EA+ L+ +M
Sbjct: 51  DVPFEKLVDLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKM 110

Query: 131 QSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSI 190
               + PN      +L AC+ L     G  ++  I++  ++ +  +  AL+D YAKCG +
Sbjct: 111 LGYGITPNRFTFPFVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCL 170

Query: 191 DLAMQVFHSYGDKDVSAYTSAIFGLAMN-GHSIEAFELFENMKSKGISPDSISYIAVLSA 249
           D A +VF     +DV A+ S I G +++ G   E   L   M++  +SP+S + + VL A
Sbjct: 171 DDAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQND-VSPNSSTIVGVLPA 229

Query: 250 CSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNV 309
            + +  +  G    H      G   ++     ++D+ G+   ++ A      M +  + V
Sbjct: 230 VAQVNSLRHG-KEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEV 288

Query: 310 IWGTLLGA 317
            W  ++GA
Sbjct: 289 TWSAMVGA 296


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/515 (40%), Positives = 308/515 (59%), Gaps = 9/515 (1%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
             K   +  +FV N L+  Y  CG + +AR V DE    DVVSWNS++ GY +N    + 
Sbjct: 167 ATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDA 226

Query: 62  LKLFDKMPQ---RNDVSWNSILGGLVRFGSVDDACRV---FNQMPKRSLVSWVVLISGFA 115
           L++  +M      +D    + L   V   + ++   V   F +M K+SLVSW V+I  + 
Sbjct: 227 LEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYM 286

Query: 116 QNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI 175
           +N  P EA+ L+  M++   EP++  + S+L AC    AL  G  ++ YI++K +  + +
Sbjct: 287 KNAMPVEAVELYSGMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLL 346

Query: 176 LCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG 235
           L  ALIDMYAKCG +D A  VF +   +DV ++T+ I     +G   +A  LF  M+  G
Sbjct: 347 LENALIDMYAKCGCLDRARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSG 406

Query: 236 ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA 295
           + PDSI+++  L+ACSH G +E+G   F  M D + I P L+H ACMVDLLGRAG ++EA
Sbjct: 407 LVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEA 466

Query: 296 ENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVET 355
             FI  MPM+P+  +WG LLGACRVH N ++G    + L +      G Y+LLSNIY + 
Sbjct: 467 YKFIQEMPMEPNERVWGALLGACRVHSNTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKA 526

Query: 356 LKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKI 415
            + E    +R  M+ + +K+ PG S +E++ ++H FL GDRSH ++ EIY+  + +VKK+
Sbjct: 527 GRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSAEIYRELDVLVKKM 586

Query: 416 KNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTK---PGSVIRIVKNIRICS 472
           K  GY  ++ S + D+EEE+KET +  HSEKLA+ F L+ T+     + IRI KN+RIC 
Sbjct: 587 KELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTEEEDSNNAIRITKNLRICG 646

Query: 473 DCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSC 507
           DCH A KL+S++  R+I IRD   +H F  G CSC
Sbjct: 647 DCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSC 681



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 133/283 (46%), Gaps = 21/283 (7%)

Query: 73  DVSWNSILG-GLVR-FGSVDD---ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALF 127
           D+ +NS LG  L+R + S+ D   A +VF+++P+R+++   V+I  +  NG  +E + +F
Sbjct: 70  DLRYNSSLGVKLMRAYASLKDVATARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVF 129

Query: 128 REMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC 187
             M S  ++P+      +L AC+  G +  G  ++    K  +     +   L+ MY KC
Sbjct: 130 GTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKC 189

Query: 188 GSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVL 247
           G +  A  V      +DV ++ S + G A N    +A E+   M+S  IS D+ +  ++L
Sbjct: 190 GFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLL 249

Query: 248 SACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP---M 304
            A S+     +   Y   MF   G K  L  +  M+ +  +  +  EA    + M     
Sbjct: 250 PAVSNT--TTENVMYVKDMFFKMG-KKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGF 306

Query: 305 KPDNVIWGTLLGAC----------RVHRNAEMGQRIGNMLIES 337
           +PD V   ++L AC          ++H   E  + I N+L+E+
Sbjct: 307 EPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLEN 349



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 87/222 (39%), Gaps = 21/222 (9%)

Query: 96  FNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGAL 155
           F +   R + S V  +    Q   PKE    F   Q LD  P+   L +           
Sbjct: 16  FRKFQTRKVTSSVPKLE-LDQKNSPKETA--FMLGQVLDTYPDLKTLRT----------- 61

Query: 156 DYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGL 215
                V+S I  + ++ +S L   L+  YA    +  A +VF    +++V      I   
Sbjct: 62  -----VHSRIISEDLRYNSSLGVKLMRAYASLKDVATARKVFDEIPERNVIIINVMIRSY 116

Query: 216 AMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE 275
             NG   E  ++F  M S  + PD  ++  VL ACS  G +  G     S   V G+   
Sbjct: 117 VNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSATKV-GLSST 175

Query: 276 LDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
           L     +V + G+ G L EA   +  M  + D V W +L+  
Sbjct: 176 LFVGNGLVSMYGKCGFLSEARLVLDEMSRR-DVVSWNSLVAG 216


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/541 (38%), Positives = 309/541 (57%), Gaps = 40/541 (7%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           +V   N+L+  YS CG +  A  VF+  D+  VVSW SMI GYVR G     +KLFD+M 
Sbjct: 387 EVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMK 446

Query: 70  QR----------------------------------NDVSWNSILGGLV-----RFGSVD 90
            R                                  N++  NS +   +     + GS+ 
Sbjct: 447 SRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMK 506

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           DA  VF+ M K+ ++SW  +I G+ +N  P EAL LF EMQ  + +P+   +  +L ACA
Sbjct: 507 DAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQR-ESKPDGTTVACILPACA 565

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
            L ALD G  ++ Y  +     D  +  A++DMY KCG + LA  +F    +KD+ ++T 
Sbjct: 566 SLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTV 625

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I G  M+G+  EA   F  M+  GI PD +S+I++L ACSH G +++G+  F+ M    
Sbjct: 626 MIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKEC 685

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
            I+P L+HYACMVDLL R G L +A  FI +MP+KPD  IWG LL  CR+H + ++ +++
Sbjct: 686 QIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLAEKV 745

Query: 331 GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHE 390
              + E +  + G Y+LL+NIY E  K E  +++RK + +R +K+ PGCS IE+ G ++ 
Sbjct: 746 AERIFELEPENTGYYVLLANIYAEAEKWEEVQKLRKKIGQRGLKKNPGCSWIEIKGKINI 805

Query: 391 FLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALA 450
           F+AGD S  + ++I    + +  K+K  GY+ +T   + + +E EKE  +  HSEKLA+A
Sbjct: 806 FVAGDCSKPQAKKIELLLKRLRSKMKEEGYSPKTAYALLNADEREKEVALCGHSEKLAMA 865

Query: 451 FGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEY 510
           FG++   PG  IR+ KN+R+C DCH   K +SK   R+I +RD   +HHF+DGSCSC  Y
Sbjct: 866 FGMLNLPPGKTIRVTKNLRVCGDCHEMAKFMSKSASREIILRDSSRFHHFKDGSCSCRGY 925

Query: 511 W 511
           W
Sbjct: 926 W 926



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 112/349 (32%), Positives = 170/349 (48%), Gaps = 43/349 (12%)

Query: 13  VKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM---- 68
           V NSLI FY V  +VR A+ +FDE  D DV+SWNSMI+GYV+NG    G+++F KM    
Sbjct: 288 VVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFG 347

Query: 69  ------------------------------------PQRNDVSWNSILGGLVRFGSVDDA 92
                                                 R     N++L    + G ++ A
Sbjct: 348 VDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSA 407

Query: 93  CRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQL 152
            RVF +M ++++VSW  +I+G+ + G    A+ LF EM+S  + P+   + S+L+ACA  
Sbjct: 408 IRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAIN 467

Query: 153 GALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAI 212
           G L  G  V+ YI++  ++ +S +  AL DMYAKCGS+  A  VF     KDV ++ + I
Sbjct: 468 GNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMI 527

Query: 213 FGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGI 272
            G   N    EA  LF  M+ +   PD  +   +L AC+ L  ++KG    H     +G 
Sbjct: 528 GGYTKNSLPNEALTLFAEMQRES-KPDGTTVACILPACASLAALDKG-REIHGYALRNGY 585

Query: 273 KPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
             +      +VD+  + GLL  A +    +P K D V W  ++    +H
Sbjct: 586 SEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNK-DLVSWTVMIAGYGMH 633



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 164/341 (48%), Gaps = 42/341 (12%)

Query: 17  LIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM------PQ 70
           L+  Y  CG +++ R VFD+  +  +  WN MI+ Y  +G   E + LF +M      P 
Sbjct: 191 LVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPN 250

Query: 71  RNDV-----------------------------SWNSILGGLVRF----GSVDDACRVFN 97
                                            S+N+++  L+ F      V  A ++F+
Sbjct: 251 SYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFD 310

Query: 98  QMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDY 157
           ++  R ++SW  +ISG+ +NG     + +F +M    ++ + A +V++  ACA +G L  
Sbjct: 311 ELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLL 370

Query: 158 GNWVYSY-IQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLA 216
           G  ++SY I+   +  +      L+DMY+KCG ++ A++VF    +K V ++TS I G  
Sbjct: 371 GKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYV 430

Query: 217 MNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPEL 276
             G S  A +LF+ MKS+G+ PD  +  ++L+AC+  G ++ G    H     + ++   
Sbjct: 431 REGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSG-KIVHDYIRENNLETNS 489

Query: 277 DHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
                + D+  + G +++A +  + M  K D + W T++G 
Sbjct: 490 FVSNALTDMYAKCGSMKDAHDVFSHMK-KKDVISWNTMIGG 529



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 113/228 (49%), Gaps = 39/228 (17%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           + +N+   + FV N+L   Y+ CG ++DA  VF      DV+SWN+MI GY +N    E 
Sbjct: 480 IRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEA 539

Query: 62  LKLFDKMPQ---------------------------------RNDVS-----WNSILGGL 83
           L LF +M +                                 RN  S      N+++   
Sbjct: 540 LTLFAEMQRESKPDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMY 599

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
           V+ G +  A  +F+ +P + LVSW V+I+G+  +G   EA+  F +M+   +EP+    +
Sbjct: 600 VKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFI 659

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKC-IKLDSILCAALIDMYAKCGSI 190
           S+L AC+  G LD G  +++ ++K+C I+ +    A ++D+ A+ G++
Sbjct: 660 SILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNL 707



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/325 (20%), Positives = 145/325 (44%), Gaps = 35/325 (10%)

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
           V+ G + +   VF+++ +  +  W ++IS ++ +G   E++ LF++M  L ++PNS    
Sbjct: 196 VKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFS 255

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           S+L   A +  ++ G  V+  I K      + +  +LI  Y     +  A ++F    D+
Sbjct: 256 SILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDR 315

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG--------- 254
           DV ++ S I G   NG      E+F  M   G+  D  + + V  AC+++G         
Sbjct: 316 DVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLH 375

Query: 255 -------WVEKGFYYFHSMFDVHGIKPELD---------------HYACMVDLLGRAGLL 292
                   +++   + +++ D++    +L+                +  M+    R GL 
Sbjct: 376 SYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLS 435

Query: 293 EEAENFIASMPMK---PDNVIWGTLLGACRVHRNAEMGQRIGNMLIESD-QNHDGRYILL 348
           + A      M  +   PD     ++L AC ++ N + G+ + + + E++ + +      L
Sbjct: 436 DGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNAL 495

Query: 349 SNIYVETLKGENAEEVRKTMRKRKI 373
           +++Y +    ++A +V   M+K+ +
Sbjct: 496 TDMYAKCGSMKDAHDVFSHMKKKDV 520



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 80/156 (51%), Gaps = 12/156 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           ++N ++ D +V N+++  Y  CG +  AR +FD   + D+VSW  MI GY  +G   E +
Sbjct: 581 LRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAI 640

Query: 63  KLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLISG 113
             F++M     + ++VS+ SIL      G +D+  ++FN M K      +L  +  ++  
Sbjct: 641 NTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDL 700

Query: 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
            A+ G   +A    + M    ++P++ I  +LL  C
Sbjct: 701 LARTGNLVKAHKFIKAMP---IKPDATIWGALLCGC 733



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 70/146 (47%), Gaps = 2/146 (1%)

Query: 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD 173
           F + G  K A+ L    Q+ + +  +    S+L  CA+  ++  G  V S I+   + +D
Sbjct: 127 FCEVGDLKNAMELLCSSQNSNFDLGA--YCSILQLCAERKSIRDGRRVRSIIESSGVMID 184

Query: 174 SILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKS 233
            IL   L+ MY KCG +     VF    +  +  +   I   + +G+  E+  LF+ M  
Sbjct: 185 GILGVKLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLE 244

Query: 234 KGISPDSISYIAVLSACSHLGWVEKG 259
            GI P+S ++ ++L   + +  VE+G
Sbjct: 245 LGIKPNSYTFSSILKCFAAVARVEEG 270


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/556 (37%), Positives = 333/556 (59%), Gaps = 51/556 (9%)

Query: 7   FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFD 66
           +  D+FV ++LI  YS CG + DAR +FDE  + +VVSW SMI+GYV+N    E + LF 
Sbjct: 117 YGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERAREAVFLFK 176

Query: 67  KMPQRNDVSW-------------------------------------------------- 76
           +    ++  +                                                  
Sbjct: 177 EFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAVKKGFEGCLAVG 236

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM-QSLDL 135
           N+++    + G +  + +VF+ M +  + SW  LI+ +AQNG   EA +LF +M +  ++
Sbjct: 237 NTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEV 296

Query: 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ 195
             N+  L ++L ACA  GAL  G  ++  + K  ++ + ++  +++DMY KCG +++A +
Sbjct: 297 RYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARK 356

Query: 196 VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGW 255
            F     K+V ++T  + G  M+GH  EA ++F  M   GI P+ I++++VL+ACSH G 
Sbjct: 357 AFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGL 416

Query: 256 VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
           +++G+++F+ M     ++P ++HY+CMVDLLGRAG L+EA   I  M +KPD ++WG+LL
Sbjct: 417 LKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLL 476

Query: 316 GACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKR 375
           GACR+H+N E+G+     L + D ++ G Y+LLSNIY +  + ++ E +R  M+   + +
Sbjct: 477 GACRIHKNVELGEISARKLFKLDPSNCGYYVLLSNIYADAGRWDDVERMRILMKNHGLLK 536

Query: 376 APGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEE 435
            PG S++E  G VH FL GD+ H + ++IY++ +E+  K++  GY     SV++D++ EE
Sbjct: 537 TPGYSIVEHKGRVHVFLVGDKEHPQHEKIYEYLDELNVKLQEVGYMPNVTSVLYDVDVEE 596

Query: 436 KETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRK 495
           K  V+  HSEKLA+AFG++ + PGSVI+I+KN+RIC DCH A+KL+SK+  R+I IRD K
Sbjct: 597 KGMVLRVHSEKLAVAFGIMNSVPGSVIQIIKNLRICGDCHFAIKLISKIVNREIVIRDSK 656

Query: 496 HYHHFEDGSCSCLEYW 511
            +HHF+DG CSC +YW
Sbjct: 657 RFHHFKDGLCSCGDYW 672



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 11/164 (6%)

Query: 101 KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNW 160
           K S+ SW  +I+ FA++G   +AL  F  M+ L L PN +     + +C+ L  L  G  
Sbjct: 48  KTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCAGKQ 107

Query: 161 VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGH 220
           ++          D  + +ALIDMY+KCG ++ A ++F    +++V ++TS I G   N  
Sbjct: 108 IHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNER 167

Query: 221 SIEAFELF-----------ENMKSKGISPDSISYIAVLSACSHL 253
           + EA  LF           + +   G+  DS+    V+SAC+ +
Sbjct: 168 AREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARV 211


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 201/469 (42%), Positives = 302/469 (64%), Gaps = 3/469 (0%)

Query: 46  NSMINGYVRNG--EILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRS 103
           N++I+ Y ++G  EI   +   ++    N +++ S+L G  + G+V  A  +FN++  R 
Sbjct: 314 NALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRD 373

Query: 104 LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYS 163
           +V+W  +I G+ QNG   +AL LFR M +   EPNS  L ++LS  + L  L++G  +++
Sbjct: 374 VVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHA 433

Query: 164 YIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH-SYGDKDVSAYTSAIFGLAMNGHSI 222
              K        +  ALI MYAK G+I++A +VF    G K++ ++TS I  LA +G   
Sbjct: 434 SAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGK 493

Query: 223 EAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACM 282
           EA  LFE M S G+ PD I+Y+ VLSAC+H+G VE+G  Y++ M +VH I+P L HYACM
Sbjct: 494 EAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACM 553

Query: 283 VDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD 342
           +DL GRAGLL+EA  FI SMP++PDN+ WG+LL +C++H+NA++ +     L+  D  + 
Sbjct: 554 IDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNS 613

Query: 343 GRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQ 402
           G Y+ L+N+Y    K ENA + RK M+ R +++  G S I +   VH F   D  H +  
Sbjct: 614 GAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKD 673

Query: 403 EIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVI 462
           EIY+   EI ++IK  G+  +T SV+ D+EEE KE ++ YHSEKLA+AFGL+ T   + +
Sbjct: 674 EIYKLMAEIWEEIKKMGFIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTPENTAL 733

Query: 463 RIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           RI+KN+R+C+DCHSA+K +SK+  R+I +RD   +HHF+DGSCSC +YW
Sbjct: 734 RIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 102/359 (28%), Positives = 167/359 (46%), Gaps = 68/359 (18%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
            S++N Y + G+ +    +FD+M  +N  +WN+++   ++ G  + A   F +MP R +V
Sbjct: 181 TSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIV 240

Query: 106 SWVVLISGFAQNGRPKEALALFREM-QSLDLEPNSAILVSLLSACAQLGALDYGNWVYSY 164
           SW  +ISG++Q G   EAL +F +M     L+P++  L S+LSACA L  L+ G  +++Y
Sbjct: 241 SWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAY 300

Query: 165 IQKKCIKLDSILCAALIDMYAKCGSIDL-------------------------------- 192
           I +   +    +  ALI MYAK G +++                                
Sbjct: 301 ILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVK 360

Query: 193 -AMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS 251
            A ++F+   D+DV A+T+ I G   NG   +A ELF  M ++G  P+S +  A+LS  S
Sbjct: 361 PAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSS 420

Query: 252 HLGWVEKGFYYFHS-------------------------------MFDVHGIKPELDHYA 280
            L  +E G     S                               +FD+   K E+  + 
Sbjct: 421 SLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWT 480

Query: 281 CMVDLLGRAGLLEEAENF---IASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIE 336
            M+  L + GL +EA N    + S+ MKPD++ +  +L AC      E G++  NM+ E
Sbjct: 481 SMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTE 539



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 125/257 (48%), Gaps = 9/257 (3%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K      V++ N+L+ FY+  G +R A  VFDE       SWN++I+GY + G     
Sbjct: 36  IIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVS 95

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
            +L  +MP  + VSW +I+ G  +FG  D+A  +F +M    +      +S    +    
Sbjct: 96  RRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAAN 155

Query: 122 EALALFREMQS----LDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILC 177
           + L + R++ S    L L     +  SLL+  A+ G       V+  +  K I       
Sbjct: 156 QTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNIS----TW 211

Query: 178 AALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM-KSKGI 236
            ALI +Y + G  +LA   F    D+D+ ++ S I G +  G+++EA  +F  M     +
Sbjct: 212 NALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSL 271

Query: 237 SPDSISYIAVLSACSHL 253
            PD+ +  ++LSAC++L
Sbjct: 272 KPDNFTLASILSACANL 288



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 138/304 (45%), Gaps = 36/304 (11%)

Query: 40  LDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQM 99
           L V   N+++  Y + G +     +FD+MP ++  SWN+++ G  + G+ + + R+  +M
Sbjct: 43  LGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEM 102

Query: 100 PKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGN 159
           P    VSW  +I G+ Q G    A+ +F +M S  + P+   + ++LS+CA    LD G 
Sbjct: 103 PDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGR 162

Query: 160 WVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNG 219
            ++S++ K  +     +  +L++MYAKCG   +A  VF     K++S + + I     +G
Sbjct: 163 KIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSG 222

Query: 220 HSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHY 279
               A   FE M  +    D +S+ +++S  S  G+  +    F  M +    +P L   
Sbjct: 223 QFELAASQFEKMPDR----DIVSWNSMISGYSQQGYNLEALVIFSKMLN----EPSL--- 271

Query: 280 ACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQ 339
                                    KPDN    ++L AC       +G++I   ++ ++ 
Sbjct: 272 -------------------------KPDNFTLASILSACANLEKLNIGKQIHAYILRAET 306

Query: 340 NHDG 343
              G
Sbjct: 307 ETSG 310



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 129/284 (45%), Gaps = 79/284 (27%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM- 68
           ++    SL+  Y+  G V+ AR +F++  D DVV+W +MI GYV+NG   + L+LF  M 
Sbjct: 342 NIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMV 401

Query: 69  ---PQRNDVSW-----------------------------------NSILGGLVRFGSVD 90
              P+ N  +                                    N+++    + G+++
Sbjct: 402 NEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNIN 461

Query: 91  DACRVFNQMP--KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148
            A RVF+ +P  K+ +VSW  +I   AQ+G  KEA+ LF  M S+ ++P+    V +LSA
Sbjct: 462 VAKRVFD-LPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSA 520

Query: 149 CAQLGALDYGNWVYSYIQKKCIKLDSILC--AALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
           C  +G ++ G   Y+ +  +  +++  L   A +ID+Y + G +                
Sbjct: 521 CTHVGLVEQGRKYYN-MMTEVHEIEPTLSHYACMIDLYGRAGLLQ--------------- 564

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250
                           EA+   E+M    I PD+I++ ++L++C
Sbjct: 565 ----------------EAYLFIESMP---IEPDNIAWGSLLASC 589



 Score = 39.7 bits (91), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 4/110 (3%)

Query: 158 GNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAM 217
           G  V+  I KK + L   L   L+  YAK GS+  A  VF     K   ++ + I G A 
Sbjct: 29  GRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAK 88

Query: 218 NGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMF 267
            G+    FE+   +  +    D +S+ A++   +  G  +   + F  M 
Sbjct: 89  QGN----FEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMI 134


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 219/545 (40%), Positives = 312/545 (57%), Gaps = 40/545 (7%)

Query: 5   NSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKL 64
           + FA  VF+ NSLI  Y  CG V DAR VFD     D+ SW S+I GY +N    E L L
Sbjct: 93  SQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGL 152

Query: 65  FDKMP----QRNDVSWNSILGG-----------------------------------LVR 85
              M     + N  ++ S+L                                       R
Sbjct: 153 LPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYAR 212

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
            G +D A  VF+Q+  ++ VSW  LI+GFA+ G  +  L +F EMQ    E       S+
Sbjct: 213 CGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSV 272

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
            SA A +GAL+ G WV++++ K   +L + +   ++DMYAK GS+  A +VF     KDV
Sbjct: 273 FSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDV 332

Query: 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHS 265
             + S +   A  G   EA   FE M+  G+  + I+++++L+ACSH G V++G  YF  
Sbjct: 333 VTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYF-D 391

Query: 266 MFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAE 325
           M   + ++PE+DHY  +VDLLGRAGLL +A  FI  MPMKP   +WG LLG+CR+H+NA+
Sbjct: 392 MMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAK 451

Query: 326 MGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELD 385
           +GQ   + + E D +  G  +LL NIY  T + + A  VRK M+   +K+ P CS +E++
Sbjct: 452 IGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIE 511

Query: 386 GVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSE 445
             VH F+A D +H +++EIY+ WEEI  +I+  GY   T  V+  ++E+E++  + YHSE
Sbjct: 512 NSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHSE 571

Query: 446 KLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSC 505
           K+ALAF LI    G+ IRI+KNIRIC DCHSA + +SKVFKR+I +RD   +HHF  GSC
Sbjct: 572 KIALAFALINMPLGATIRIMKNIRICGDCHSAFRYISKVFKREIVVRDTNRFHHFSSGSC 631

Query: 506 SCLEY 510
           SC +Y
Sbjct: 632 SCGDY 636



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 119/254 (46%), Gaps = 41/254 (16%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + VK  +  DV+V ++L+  Y+ CGR+  A  VFD+ +  + VSWN++I G+ R G+   
Sbjct: 190 LTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGET 249

Query: 61  GLKLFDKMPQRNDV-----------------------SW-----------------NSIL 80
            L +F +M QRN                          W                 N+IL
Sbjct: 250 TLLMFAEM-QRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTIL 308

Query: 81  GGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
               + GS+ DA +VF+++ K+ +V+W  +++ FAQ G  +EA+  F EM+   +  N  
Sbjct: 309 DMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQI 368

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
             +S+L+AC+  G +  G   +  +++  ++ +      ++D+  + G ++ A+      
Sbjct: 369 TFLSILTACSHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKM 428

Query: 201 GDKDVSAYTSAIFG 214
             K  +A   A+ G
Sbjct: 429 PMKPTAAVWGALLG 442



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 96/203 (47%), Gaps = 12/203 (5%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K+      FV N+++  Y+  G + DAR VFD  D  DVV+WNSM+  + + G   E 
Sbjct: 292 MIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREA 351

Query: 62  LKLFDKMPQ----RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS----WVVLISG 113
           +  F++M +     N +++ SIL      G V +  + F+ M + +L      +V ++  
Sbjct: 352 VTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDL 411

Query: 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD 173
             + G   +AL    +M    ++P +A+  +LL +C        G +   ++  +    D
Sbjct: 412 LGRAGLLNDALVFIFKMP---MKPTAAVWGALLGSCRMHKNAKIGQFAADHV-FELDPDD 467

Query: 174 SILCAALIDMYAKCGSIDLAMQV 196
           +     L ++YA  G  D A +V
Sbjct: 468 TGPPVLLYNIYASTGQWDAAARV 490



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 57/116 (49%)

Query: 134 DLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLA 193
           +L     +  SL++ACA+  +LD    +++++          L  +LI +Y KCG++  A
Sbjct: 59  ELAATPRLYHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADA 118

Query: 194 MQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
            +VF     +D+ ++TS I G A N    EA  L   M      P+  ++ ++L A
Sbjct: 119 RRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKA 174


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/554 (38%), Positives = 326/554 (58%), Gaps = 43/554 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVC---GRVRDARWVFDESDDLDVVSWNSMINGYVRNGE 57
           +V+K+    DV V  SL+  Y+ C   G V DAR VFD     +V+SW ++I GYV++G 
Sbjct: 170 LVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGG 229

Query: 58  I-LEGLKLFDKMPQ----RNDVSWNSILGGLV---------------------------- 84
              E ++LF +M Q     N  +++S+L                                
Sbjct: 230 CDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGN 289

Query: 85  -------RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEP 137
                  R G++++A + F+ + +++LVS+  +++ +A++   +EA  LF E++      
Sbjct: 290 SLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGV 349

Query: 138 NSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVF 197
           N+    SLLS  + +GA+  G  ++S I K   K +  +C ALI MY++CG+I+ A QVF
Sbjct: 350 NAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVF 409

Query: 198 HSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVE 257
           +  GD +V ++TS I G A +G +  A E F  M   G+SP+ ++YIAVLSACSH+G + 
Sbjct: 410 NEMGDGNVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLIS 469

Query: 258 KGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
           +G  +F SM   HGI P ++HYAC+VDLLGR+G LEEA   + SMP K D ++  T LGA
Sbjct: 470 EGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFKADALVLRTFLGA 529

Query: 318 CRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAP 377
           CRVH N ++G+    M++E D +    YILLSN++    + E   E+RK M++R + +  
Sbjct: 530 CRVHGNMDLGKHAAEMILEQDPHDPAAYILLSNLHASAGQWEEVAEIRKKMKERNLTKEA 589

Query: 378 GCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKE 437
           GCS IE++  VH+F  GD SH + QEIY   +++  KIK  GY   T  V+ D+EEE+KE
Sbjct: 590 GCSWIEVENKVHKFYVGDTSHPQAQEIYDELDQLALKIKELGYIPSTDFVLHDVEEEQKE 649

Query: 438 TVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHY 497
             +  HSEK+A+A+G I T     IR+ KN+R+C DCH+A K  S V +++I +RD   +
Sbjct: 650 QYLFQHSEKIAVAYGFISTSTSRPIRVFKNLRVCGDCHTAFKYFSIVRRKEIVLRDANRF 709

Query: 498 HHFEDGSCSCLEYW 511
           HHF+DG+CSC +YW
Sbjct: 710 HHFKDGTCSCNDYW 723



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 128/268 (47%), Gaps = 47/268 (17%)

Query: 41  DVVSWNSMINGYVRNGEILEGLKLFDKM-------------------PQRNDVSWNSILG 81
           D+VSW+++I+ Y  N +  E +  F  M                     + ++S   I+ 
Sbjct: 6   DLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKIIF 65

Query: 82  GLVR----------------------FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGR 119
           G +                        G ++ A +VF++MP R++V+W ++I+ F Q G 
Sbjct: 66  GFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGF 125

Query: 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
            ++A+ LF +M      P+   L  ++SACA++G L  G   +  + K  + LD  +  +
Sbjct: 126 SRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCS 185

Query: 180 LIDMYAKC---GSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGH-SIEAFELFENMKSKG 235
           L+DMYAKC   GS+D A +VF      +V ++T+ I G   +G    EA ELF  M    
Sbjct: 186 LVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQ 245

Query: 236 ISPDSISYIAVLSACSHLG--WVEKGFY 261
           + P+  ++ +VL AC++L   W+ +  Y
Sbjct: 246 VKPNHFTFSSVLKACANLSDIWLGEQVY 273



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 100/209 (47%), Gaps = 6/209 (2%)

Query: 101 KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNW 160
           KR LVSW  LIS +A N +  EA++ F +M      PN      +  AC+    +  G  
Sbjct: 4   KRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKI 63

Query: 161 VYSYIQKKC-IKLDSILCAALIDMYAKC-GSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
           ++ ++ K    + D  +  ALIDM+ K  G ++ A +VF    D++V  +T  I      
Sbjct: 64  IFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQL 123

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDH 278
           G S +A +LF +M   G  PD  +   V+SAC+ +G +  G   FH +    G+  ++  
Sbjct: 124 GFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLG-RQFHCLVMKSGLDLDVCV 182

Query: 279 YACMVDLLGRA---GLLEEAENFIASMPM 304
              +VD+  +    G +++A      MP+
Sbjct: 183 GCSLVDMYAKCVADGSVDDARKVFDRMPV 211


>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
 gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
          Length = 744

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/470 (41%), Positives = 307/470 (65%), Gaps = 9/470 (1%)

Query: 47  SMINGYVRNGEILEGLKLFDKM-----PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPK 101
           ++I+ Y + G+     ++FD +     PQ    SWN+I+ G  + G VD A  +F++M  
Sbjct: 279 ALIDMYAKCGDFGHAQQVFDALGRGPRPQ----SWNAIIDGYCKHGHVDVARSLFDEMEV 334

Query: 102 RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161
           R ++++  +++G+  +G+ +EAL LF  M+  DL  ++  +V+LL+ACA LGAL  G  +
Sbjct: 335 RDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRAL 394

Query: 162 YSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHS 221
           ++ I+++ ++ D  L  AL+DMY KCG +D A  VF   G +DV  +T+ I GLA NG  
Sbjct: 395 HACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMG 454

Query: 222 IEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYAC 281
             A E F  M+  G  P+S+SYIAVL+ACSH   + +G  YF  M  ++ I P+++HY C
Sbjct: 455 KAALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGC 514

Query: 282 MVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH 341
           M+DLLGR+GLL+EA + + +MP++P+ VIW ++L ACRVH++ ++ Q     L++ + + 
Sbjct: 515 MIDLLGRSGLLDEAMDLVKTMPIQPNAVIWASILSACRVHKHIDLAQCAAEHLLKLEPDE 574

Query: 342 DGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKT 401
           DG Y+ L NIY+++ + ENA ++R  M +R++K+  G S I + G VH+F+  D+SH + 
Sbjct: 575 DGVYVQLYNIYIDSRQWENASKIRMLMEERQVKKTAGYSSITVAGQVHKFVVSDKSHPRI 634

Query: 402 QEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSV 461
            EI    EEI  ++K+ GY+  T  +  D++EEEKE  +  HSEKLA+AFGLI   P   
Sbjct: 635 LEIIAMLEEISHRLKSLGYSPLTSQITVDVDEEEKEQALLAHSEKLAIAFGLINLAPNLP 694

Query: 462 IRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           + I KN+R+C DCHSA+KL+S+++ R+I +RDR  +HHF +G+CSC ++W
Sbjct: 695 VHIRKNLRVCEDCHSAIKLISRLWNREIIVRDRSRFHHFREGTCSCNDFW 744



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 149/303 (49%), Gaps = 34/303 (11%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           NS+I+ Y+R G   +  + FD++  ++ V+W  ++ GL + G + D   + +Q P R ++
Sbjct: 146 NSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVI 205

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           SW  LI+ +++  R +EA+  F+ M S  + P+   ++++LSACA+L  L+ G  ++  +
Sbjct: 206 SWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLV 265

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD----------------------- 202
           ++K +     L  ALIDMYAKCG    A QVF + G                        
Sbjct: 266 EEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVA 325

Query: 203 ---------KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL 253
                    +D+  + S + G   +G   EA  LF +M+   +  D+ + + +L+AC+ L
Sbjct: 326 RSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASL 385

Query: 254 GWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGT 313
           G +++G    H+  +   ++ ++     ++D+  + G ++EA      M  K D   W  
Sbjct: 386 GALQQG-RALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMG-KRDVHTWTA 443

Query: 314 LLG 316
           ++ 
Sbjct: 444 MIA 446



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/265 (21%), Positives = 101/265 (38%), Gaps = 39/265 (14%)

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           A  +F++MP  + +    L +       P     LFR M+   + P+       L  C+ 
Sbjct: 56  ALHLFDRMPPSTFLFDTALRACSRAGSDPHRPFLLFRRMRRAGVRPD-GFTFHFLFKCSS 114

Query: 152 LGALDYGNWVYSYIQKKCIKL-----DSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
             +  +   + + +   C++         +  +LI MY + G    A + F     KD  
Sbjct: 115 SSSRPHSLLLCTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAV 174

Query: 207 AYTSAIFGLAMNG-------------------------------HSIEAFELFENMKSKG 235
           A+T  I GLA  G                                + EA   F+ M S G
Sbjct: 175 AWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHG 234

Query: 236 ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA 295
           I+PD ++ IAVLSAC+ L  +E G    H + +  G+    +    ++D+  + G    A
Sbjct: 235 IAPDEVTVIAVLSACAKLKDLELG-RSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHA 293

Query: 296 ENFIASMPMKPDNVIWGTLL-GACR 319
           +    ++   P    W  ++ G C+
Sbjct: 294 QQVFDALGRGPRPQSWNAIIDGYCK 318



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 16/169 (9%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D+++  +L+  Y  CGRV +A  VF      DV +W +MI G   NG     L+ F +M 
Sbjct: 406 DIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMR 465

Query: 70  ----QRNDVSWNSILGG-----LVRFGSV--DDACRVFNQMPKRSLVSWVVLISGFAQNG 118
               Q N VS+ ++L       L+  G +  D+   ++N  P+  +  +  +I    ++G
Sbjct: 466 CDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQ--IEHYGCMIDLLGRSG 523

Query: 119 RPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK 167
              EA+ L + M    ++PN+ I  S+LSAC     +D       ++ K
Sbjct: 524 LLDEAMDLVKTMP---IQPNAVIWASILSACRVHKHIDLAQCAAEHLLK 569


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 201/469 (42%), Positives = 302/469 (64%), Gaps = 3/469 (0%)

Query: 46  NSMINGYVRNG--EILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRS 103
           N++I+ Y ++G  EI   +   ++    N +++ S+L G  + G+V  A  +FN++  R 
Sbjct: 314 NALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRD 373

Query: 104 LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYS 163
           +V+W  +I G+ QNG   +AL LFR M +   EPNS  L ++LS  + L  L++G  +++
Sbjct: 374 VVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHA 433

Query: 164 YIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH-SYGDKDVSAYTSAIFGLAMNGHSI 222
              K        +  ALI MYAK G+I++A +VF    G K++ ++TS I  LA +G   
Sbjct: 434 SAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGK 493

Query: 223 EAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACM 282
           EA  LFE M S G+ PD I+Y+ VLSAC+H+G VE+G  Y++ M +VH I+P L HYACM
Sbjct: 494 EAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACM 553

Query: 283 VDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD 342
           +DL GRAGLL+EA  FI SMP++PDN+ WG+LL +C++H+NA++ +     L+  D  + 
Sbjct: 554 IDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNS 613

Query: 343 GRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQ 402
           G Y+ L+N+Y    K ENA + RK M+ R +++  G S I +   VH F   D  H +  
Sbjct: 614 GAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKD 673

Query: 403 EIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVI 462
           EIY+   EI ++IK  G+  +T SV+ D+EEE KE ++ YHSEKLA+AFGL+ T   + +
Sbjct: 674 EIYKLMAEIWEEIKKMGFIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTPENTAL 733

Query: 463 RIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           RI+KN+R+C+DCHSA+K +SK+  R+I +RD   +HHF+DGSCSC +YW
Sbjct: 734 RIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 103/359 (28%), Positives = 168/359 (46%), Gaps = 68/359 (18%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
            S++N Y + G+ +    +FD+M  +N  +WN+++   ++ G  + A   F +MP R +V
Sbjct: 181 TSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIV 240

Query: 106 SWVVLISGFAQNGRPKEALALFREM-QSLDLEPNSAILVSLLSACAQLGALDYGNWVYSY 164
           SW  +ISG++Q G   EALA+F +M     L+P++  L S+LSACA L  L+ G  +++Y
Sbjct: 241 SWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAY 300

Query: 165 IQKKCIKLDSILCAALIDMYAKCGSIDL-------------------------------- 192
           I +   +    +  ALI MYAK G +++                                
Sbjct: 301 ILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVK 360

Query: 193 -AMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS 251
            A ++F+   D+DV A+T+ I G   NG   +A ELF  M ++G  P+S +  A+LS  S
Sbjct: 361 PAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSS 420

Query: 252 HLGWVEKGFYYFHS-------------------------------MFDVHGIKPELDHYA 280
            L  +E G     S                               +FD+   K E+  + 
Sbjct: 421 SLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWT 480

Query: 281 CMVDLLGRAGLLEEAENF---IASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIE 336
            M+  L + GL +EA N    + S+ MKPD++ +  +L AC      E G++  NM+ E
Sbjct: 481 SMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTE 539



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 125/257 (48%), Gaps = 9/257 (3%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K      V++ N+L+ FY+  G +R A  VFDE       SWN++I+GY + G     
Sbjct: 36  IIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVS 95

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
            +L  +MP  + VSW +I+ G  +FG  D+A  +F +M    +      +S    +    
Sbjct: 96  RRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAAN 155

Query: 122 EALALFREMQS----LDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILC 177
           + L + R++ S    L L     +  SLL+  A+ G       V+  +  K I       
Sbjct: 156 QTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNIS----TW 211

Query: 178 AALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM-KSKGI 236
            ALI +Y + G  +LA   F    D+D+ ++ S I G +  G+++EA  +F  M     +
Sbjct: 212 NALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSL 271

Query: 237 SPDSISYIAVLSACSHL 253
            PD+ +  ++LSAC++L
Sbjct: 272 KPDNFTLASILSACANL 288



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 138/304 (45%), Gaps = 36/304 (11%)

Query: 40  LDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQM 99
           L V   N+++  Y + G +     +FD+MP ++  SWN+++ G  + G+ + + R+  +M
Sbjct: 43  LGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEM 102

Query: 100 PKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGN 159
           P    VSW  +I G+ Q G    A+ +F +M S  + P+   + ++LS+CA    LD G 
Sbjct: 103 PDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGR 162

Query: 160 WVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNG 219
            ++S++ K  +     +  +L++MYAKCG   +A  VF     K++S + + I     +G
Sbjct: 163 KIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSG 222

Query: 220 HSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHY 279
               A   FE M  +    D +S+ +++S  S  G+  +    F  M +    +P L   
Sbjct: 223 QFELAASQFEKMPDR----DIVSWNSMISGYSQQGYNLEALAIFSKMLN----EPSL--- 271

Query: 280 ACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQ 339
                                    KPDN    ++L AC       +G++I   ++ ++ 
Sbjct: 272 -------------------------KPDNFTLASILSACANLEKLNIGKQIHAYILRAET 306

Query: 340 NHDG 343
              G
Sbjct: 307 ETSG 310



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 129/284 (45%), Gaps = 79/284 (27%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM- 68
           ++    SL+  Y+  G V+ AR +F++  D DVV+W +MI GYV+NG   + L+LF  M 
Sbjct: 342 NIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMV 401

Query: 69  ---PQRNDVSW-----------------------------------NSILGGLVRFGSVD 90
              P+ N  +                                    N+++    + G+++
Sbjct: 402 NEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNIN 461

Query: 91  DACRVFNQMP--KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148
            A RVF+ +P  K+ +VSW  +I   AQ+G  KEA+ LF  M S+ ++P+    V +LSA
Sbjct: 462 VAKRVFD-LPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSA 520

Query: 149 CAQLGALDYGNWVYSYIQKKCIKLDSILC--AALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
           C  +G ++ G   Y+ +  +  +++  L   A +ID+Y + G +                
Sbjct: 521 CTHVGLVEQGRKYYN-MMTEVHEIEPTLSHYACMIDLYGRAGLLQ--------------- 564

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250
                           EA+   E+M    I PD+I++ ++L++C
Sbjct: 565 ----------------EAYLFIESMP---IEPDNIAWGSLLASC 589



 Score = 39.7 bits (91), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 4/110 (3%)

Query: 158 GNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAM 217
           G  V+  I KK + L   L   L+  YAK GS+  A  VF     K   ++ + I G A 
Sbjct: 29  GRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAK 88

Query: 218 NGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMF 267
            G+    FE+   +  +    D +S+ A++   +  G  +   + F  M 
Sbjct: 89  QGN----FEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMI 134


>gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera]
          Length = 1434

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 205/420 (48%), Positives = 287/420 (68%), Gaps = 4/420 (0%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136
           N+++      G  + A ++F  M +R+LV+W  +I+G+A NGRP EAL LFREM    +E
Sbjct: 34  NTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVE 93

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCA--ALIDMYAKCGSIDLAM 194
           P+   +VSLLSACA+LGAL  G   + Y+ K  + LD  L A  AL+D+YAKCGSI  A 
Sbjct: 94  PDGFTMVSLLSACAELGALALGRRAHVYMVK--VGLDGNLHAGNALLDLYAKCGSIRQAH 151

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
           +VF    +K V ++TS I GLA+NG   EA ELF+ ++ KG+ P  I+++ VL ACSH G
Sbjct: 152 KVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCG 211

Query: 255 WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTL 314
            V++GF YF  M + +GI P+++HY CMVDLLGRAGL+++A  FI +MPM+P+ V+W TL
Sbjct: 212 MVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTL 271

Query: 315 LGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIK 374
           LGAC +H +  +G+     L++ +  H G Y+LLSN+Y    +  +  +VR+TM +  +K
Sbjct: 272 LGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVK 331

Query: 375 RAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEE 434
           + PG SL+EL   +HEF+ GDRSH +T+EIY    EI K +K  GY     +V+ DIEEE
Sbjct: 332 KTPGHSLVELRNRLHEFVMGDRSHPQTEEIYVKLAEITKLLKLEGYVPHISNVLADIEEE 391

Query: 435 EKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDR 494
           EKET + YHSEK+A+AF LI T  G  IR+VKN+R+C+DCH A+KL+SKVF R+I +RDR
Sbjct: 392 EKETALSYHSEKIAIAFMLINTAAGIPIRVVKNLRVCADCHLAIKLISKVFDREIVVRDR 451



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 96/197 (48%), Gaps = 39/197 (19%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + ++N F   VFV+N+L+  Y+ CG    A  +F+   + ++V+WNS+INGY  NG   E
Sbjct: 20  IAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNE 79

Query: 61  GLKLFDKMPQR---------------------------------------NDVSWNSILG 81
            L LF +M  R                                       N  + N++L 
Sbjct: 80  ALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLD 139

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + GS+  A +VF++M ++S+VSW  LI G A NG  KEAL LF+E++   L P+   
Sbjct: 140 LYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEIT 199

Query: 142 LVSLLSACAQLGALDYG 158
            V +L AC+  G +D G
Sbjct: 200 FVGVLYACSHCGMVDEG 216


>gi|297805648|ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316544|gb|EFH46967.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1111

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 200/503 (39%), Positives = 306/503 (60%), Gaps = 31/503 (6%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           M ++  F  D  V+  LI  Y+  G +     VF+     D V   +M+    R G++  
Sbjct: 141 MTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSVSYPDFVCRTAMVTACARCGDVAF 200

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
             KLF+                                MP++  ++W  +ISG+AQ G  
Sbjct: 201 ARKLFEG-------------------------------MPEKDPIAWNAMISGYAQVGES 229

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
           +EAL LF  MQ   ++ N   ++S+LSAC QLGALD G W +SYI++  IK+   L   L
Sbjct: 230 REALNLFHLMQLEGVKVNGVSMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLGTTL 289

Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           +D+YAKCG +D AM+VF    +K+V  ++SA+ GLAMNG   +  +LF  MK  G++P++
Sbjct: 290 VDLYAKCGDMDKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLKLFSLMKQDGVTPNA 349

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
           +++++VL  CS +G+V++G  +F SM +  GI+P+LDHY C+VDL  RAG LE+A + I 
Sbjct: 350 VTFVSVLRGCSVVGFVDEGQKHFDSMRNEFGIEPQLDHYGCLVDLYARAGRLEDAVSIIQ 409

Query: 301 SMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGEN 360
            MPMK    +W +LL A R+++N E+G      ++E + ++ G Y+LLSNIY ++   +N
Sbjct: 410 QMPMKAHAAVWSSLLHASRMYKNLELGVLASKKMLELETSNHGAYVLLSNIYADSDDWDN 469

Query: 361 AEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGY 420
              VR++M+ + +++ PGCS++E++G VHEF  GD+SH K  EI   W++I ++++  GY
Sbjct: 470 VSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYNEIDAVWKDISRRLRLAGY 529

Query: 421 NVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKL 480
             +T  VMFDI+EEEKE  +  HSEK A+AFG++  K    IRIVKN+R+C DCH    +
Sbjct: 530 KADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKADVPIRIVKNLRVCGDCHQVSMM 589

Query: 481 VSKVFKRKISIRDRKHYHHFEDG 503
           +SK+F R+I +RDR  +HHF+DG
Sbjct: 590 ISKIFNREIIVRDRNRFHHFKDG 612



 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 175/474 (36%), Positives = 283/474 (59%), Gaps = 5/474 (1%)

Query: 43   VSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLV----RFGSVDDACRVFNQ 98
            V++ SMI+  V  G   EG+ +   + +   +    ++  L+    + G +  +C++F  
Sbjct: 638  VTFLSMISACVHGGNKEEGVCIHGLVMKSGVLEEVKVVNALMNLYGKTGDLISSCKLFED 697

Query: 99   MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
            +  ++LVSW  +I    QNG  +E LA F   + + L+P+ A  +++L  C  +G +   
Sbjct: 698  LSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVVRLS 757

Query: 159  NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
              ++  I       ++ +  AL+D+YAK G ++ +  VF      D  A+T+ +   A +
Sbjct: 758  QGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATH 817

Query: 219  GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDH 278
            G+  +A + FE M   G+SPD +++  +L+ACSH G VE+G YYF +M   + I+P LDH
Sbjct: 818  GYGRDAIKHFELMVHYGLSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRIEPRLDH 877

Query: 279  YACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338
            Y+CMVDL+GR+GLL++A   I  MPM+P + +WG LLGACRV+++ ++G +    L E +
Sbjct: 878  YSCMVDLMGRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAKRLFELE 937

Query: 339  QNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSH 398
                  YI+LSNIY  +   ++A  +R  M+++ + RA G S IE    +H+F+ GD SH
Sbjct: 938  PRDGRNYIMLSNIYSASGLWKDASRIRNLMKQKGLVRASGYSYIEHGNKIHKFVVGDWSH 997

Query: 399  EKTQEIYQFWEEIVKKIKN-YGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTK 457
             ++++I +  +EI KK+K+  G+   T  V+ D++E+ KE +I  HSEK+A+AFGL+   
Sbjct: 998  PESEKIQKKLKEIRKKMKSELGFKSRTEFVLHDVDEDVKEEMINQHSEKIAMAFGLLVIS 1057

Query: 458  PGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            P   I I KN+RIC DCH   K +S + KR+I IRD K +HHF +GSCSC +YW
Sbjct: 1058 PMEPIIIRKNLRICGDCHETAKAISLIEKRRIIIRDSKRFHHFLEGSCSCRDYW 1111



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 110/240 (45%), Gaps = 34/240 (14%)

Query: 89  VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD--LEPNSAILVSLL 146
           +D A ++ ++  K +L +   +I    ++  P+++   +  + S    L+P++  +  L+
Sbjct: 64  LDYANQILDRSDKPTLFALNSMIRAHCKSPVPEKSFDFYSRILSSGNGLKPDNYTVNFLV 123

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAK-------------------- 186
            AC  LG  + G  V+    ++    D  +   LI +YA+                    
Sbjct: 124 QACTGLGMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSVSYPDFV 183

Query: 187 -----------CGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG 235
                      CG +  A ++F    +KD  A+ + I G A  G S EA  LF  M+ +G
Sbjct: 184 CRTAMVTACARCGDVAFARKLFEGMPEKDPIAWNAMISGYAQVGESREALNLFHLMQLEG 243

Query: 236 ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA 295
           +  + +S I+VLSAC+ LG +++G  + HS  + + IK  +     +VDL  + G +++A
Sbjct: 244 VKVNGVSMISVLSACTQLGALDQG-RWAHSYIERNKIKITVRLGTTLVDLYAKCGDMDKA 302



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 88/197 (44%), Gaps = 3/197 (1%)

Query: 126 LFREMQS-LDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMY 184
           L R M+S +   PN    +S++SAC   G  + G  ++  + K  +  +  +  AL+++Y
Sbjct: 623 LSRMMRSEVGFRPNEVTFLSMISACVHGGNKEEGVCIHGLVMKSGVLEEVKVVNALMNLY 682

Query: 185 AKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYI 244
            K G +  + ++F     K++ ++ + I     NG + E    F   +  G+ PD  +++
Sbjct: 683 GKTGDLISSCKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFL 742

Query: 245 AVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPM 304
           AVL  C  +G V       H +    G          ++DL  + G LE++      +  
Sbjct: 743 AVLRVCEDIGVVRLS-QGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTVFLEIT- 800

Query: 305 KPDNVIWGTLLGACRVH 321
            PD++ W  +L A   H
Sbjct: 801 SPDSMAWTAMLAAYATH 817


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 191/466 (40%), Positives = 292/466 (62%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N+++  Y + G+I+   ++FD M  ++ VSWN+IL G +  G +D A  VF  MP ++ +
Sbjct: 343 NALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDL 402

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           SW+V++SG+   G  ++AL LF +M++ D++P        ++AC +LGAL +G  +++++
Sbjct: 403 SWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHL 462

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
            +   +  +    AL+ MYAKCG+++ A  VF    + D  ++ + I  L  +GH  EA 
Sbjct: 463 VQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREAL 522

Query: 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL 285
           ELF+ M ++GI PD IS++ +L+AC+H G V++GF+YF SM    GI P  DHYA ++DL
Sbjct: 523 ELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDL 582

Query: 286 LGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRY 345
           LGR+G + EA + I +MP +P   IW  +L  CR + + E G    + L      HDG Y
Sbjct: 583 LGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTY 642

Query: 346 ILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIY 405
           ILLSN Y    +  +A  VRK MR R +K+ PGCS IE+   +H FL GD  H + QE+Y
Sbjct: 643 ILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVY 702

Query: 406 QFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIV 465
           QF E I  +++  GY  +T+ V+ D+E  EKE ++  HSEKLA+ FGL+   PG+ + ++
Sbjct: 703 QFLEVIGARMRKLGYVPDTKFVLHDMEPHEKEYILFAHSEKLAVGFGLLKLPPGATVTVL 762

Query: 466 KNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           KN+RIC DCH+AM  +SK   R+I +RD + +HHF+DG CSC  YW
Sbjct: 763 KNLRICGDCHTAMMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 808



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 151/355 (42%), Gaps = 65/355 (18%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K+  A  + V N+LI  Y  C              D    SW++              
Sbjct: 191 VLKSGAAAVLSVSNALIALYMKC--------------DTPEASWDAR------------- 223

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
            K+ D+MP ++D++W +++ G VR G V+ A  VF ++  +  V W  +ISG+ Q+G   
Sbjct: 224 -KVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCA 282

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI---QKKCIKLDSI-LC 177
           +A  LFR M S  +  +     S+LSACA  G   +G  V+  I   Q   +   ++ + 
Sbjct: 283 DAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVN 342

Query: 178 AALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS--------------------------- 210
            AL+ +Y+K G I +A ++F +   KDV ++ +                           
Sbjct: 343 NALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDL 402

Query: 211 ----AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
                + G    G S +A +LF  M+++ + P   +Y   ++AC  LG ++ G    H+ 
Sbjct: 403 SWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHG-RQLHAH 461

Query: 267 FDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
               G +        ++ +  + G + +A      MP   D+V W  ++ A   H
Sbjct: 462 LVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMP-NLDSVSWNAMISALGQH 515


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/508 (39%), Positives = 314/508 (61%), Gaps = 16/508 (3%)

Query: 16  SLIQFYSVCGRVRDARWV-----------FDESDDLDVVSWNSMINGYVRNGEILEGLKL 64
           S++   S C ++R+  W            F+  D++     N++I+ Y++        ++
Sbjct: 339 SMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNI----CNALIDMYMKCHRQDTAFRI 394

Query: 65  FDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEAL 124
           FD+M  +  V+WNSI+ G V  G VD A   F  MP++++VSW  +ISG  Q    +EA+
Sbjct: 395 FDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAI 454

Query: 125 ALFREMQSLD-LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDM 183
            +F  MQS + +  +   ++S+ SAC  LGALD   W+Y YI+K  I+LD  L   L+DM
Sbjct: 455 EVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDM 514

Query: 184 YAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISY 243
           +++CG  + AM +F+S  ++DVSA+T+AI  +AM G++  A ELF++M  +G+ PD +++
Sbjct: 515 FSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAF 574

Query: 244 IAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP 303
           +  L+ACSH G V++G   F+SM  +HG+ PE  HY CMVDLLGRAGLLEEA   I  MP
Sbjct: 575 VGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMP 634

Query: 304 MKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEE 363
           M+P++VIW +LL ACRV  N EM       +        G Y+LLSN+Y    +  +  +
Sbjct: 635 MEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAK 694

Query: 364 VRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVE 423
           VR +M+++ +++ PG S I++ G  HEF +GD SH +   I    +E+ ++  + G+  +
Sbjct: 695 VRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPD 754

Query: 424 TRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSK 483
             +V+ D++E+EK  ++  HSEKLA+A+GLI +  G+ IRIVKN+R+CSDCHS  K  SK
Sbjct: 755 LSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASK 814

Query: 484 VFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           V+ R+I +RD   +H+   G CSC ++W
Sbjct: 815 VYNREIILRDNNRFHYIRQGKCSCGDFW 842



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 112/417 (26%), Positives = 187/417 (44%), Gaps = 78/417 (18%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++VK  +A D+FV+NSL+ FY+ CG +  AR VFDE  + +VVSW SMI GY R     +
Sbjct: 159 LIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKD 218

Query: 61  GLKLFDKMPQRNDVSWNSI------------------------------------LGGLV 84
            + LF +M +  +V+ NS+                                    +  LV
Sbjct: 219 AVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALV 278

Query: 85  ----RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
               +  ++D A R+F++    +L     + S + + G  +EAL +F  M    + P+  
Sbjct: 279 DMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRI 338

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
            ++S +S+C+QL  + +G   + Y+ +   +    +C ALIDMY KC   D A ++F   
Sbjct: 339 SMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRM 398

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK-------------------------- 234
            +K V  + S + G   NG    A+E FE M  K                          
Sbjct: 399 SNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFC 458

Query: 235 ------GISPDSISYIAVLSACSHLGWVE--KGFYYFHSMFDVHGIKPELDHYACMVDLL 286
                 G++ D ++ +++ SAC HLG ++  K  YY+    + +GI+ ++     +VD+ 
Sbjct: 459 SMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYY---IEKNGIQLDVRLGTTLVDMF 515

Query: 287 GRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDG 343
            R G  E A +   S+  + D   W   +GA  +  NAE    + + +IE     DG
Sbjct: 516 SRCGDPESAMSIFNSLTNR-DVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDG 571



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 81/262 (30%), Positives = 145/262 (55%), Gaps = 10/262 (3%)

Query: 2   VVKNSFAYDV-FVKNSLIQFYSVCGRVRDARWVF----DESDDLDVVSWNSMINGYVRNG 56
           V +NS +Y   F+ NSLI+ Y+  G   +A  +F    +     D  ++   ++   ++ 
Sbjct: 89  VFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSR 148

Query: 57  EILEGLK---LFDKMPQRNDV-SWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLIS 112
               G++   L  KM    D+   NS++      G +D A +VF++M +R++VSW  +I 
Sbjct: 149 AKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMIC 208

Query: 113 GFAQNGRPKEALALF-REMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK 171
           G+A+    K+A+ LF R ++  ++ PNS  +V ++SACA+L  L+ G  VY++I+   I+
Sbjct: 209 GYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIE 268

Query: 172 LDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM 231
           ++ ++ +AL+DMY KC +ID+A ++F  YG  ++    +        G + EA  +F  M
Sbjct: 269 VNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLM 328

Query: 232 KSKGISPDSISYIAVLSACSHL 253
              G+ PD IS ++ +S+CS L
Sbjct: 329 MDSGVRPDRISMLSAISSCSQL 350



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 75/174 (43%), Gaps = 12/174 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           + KN    DV +  +L+  +S CG    A  +F+   + DV +W + I      G     
Sbjct: 496 IEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERA 555

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLIS 112
           ++LFD M ++    + V++   L      G V     +F  M K   VS     +  ++ 
Sbjct: 556 IELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVD 615

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQ 166
              + G  +EA+ L  +M    +EPN  I  SLL+AC   G ++   +    IQ
Sbjct: 616 LLGRAGLLEEAVQLIEDMP---MEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQ 666


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 198/548 (36%), Positives = 323/548 (58%), Gaps = 40/548 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           ++  F   V +  +L+  Y+ CG ++ AR +FD   + +VVSWNSMI+ YV+N    E +
Sbjct: 263 MRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAM 322

Query: 63  KLFDKM------PQ---------------------------------RNDVSWNSILGGL 83
            +F KM      P                                  RN    NS++   
Sbjct: 323 VIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLISMY 382

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
            +   VD A  +F ++  R++VSW  +I GFAQNGRP EAL  F +MQ+  ++P++   V
Sbjct: 383 CKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYV 442

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           S+++A A+L    +  W++  + + C+  +  +  AL+DMYAKCG+I +A  +F    ++
Sbjct: 443 SVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSER 502

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
            V+ + + I G   +G    A ELFE M+   I P+ +++++V+SACSH G VE G   F
Sbjct: 503 HVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCF 562

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
           H M + + I+P +DHY  MVDLLGRAG L EA +FI  MP+KP   ++G +LGAC++H+N
Sbjct: 563 HMMKENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKN 622

Query: 324 AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE 383
               +++   L E +    G ++LL+NIY      E   +VR +M ++ +++ PGCS++E
Sbjct: 623 VNFAEKVAERLFELNPEDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVE 682

Query: 384 LDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYH 443
           +   VH F +G  +H  +++IY F E+++ +IK  GY  +T +++  +E++ KE ++  H
Sbjct: 683 IKNEVHSFFSGSTAHPSSKKIYAFLEKLICQIKEAGYVPDT-NLILGLEDDVKEQLLSSH 741

Query: 444 SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
           SEKLA++FGL+ T  G+ I + KN+R+C+DCH+A K +S V  R+I +RD + +HHF++G
Sbjct: 742 SEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIIVRDMQRFHHFKNG 801

Query: 504 SCSCLEYW 511
           +CSC +YW
Sbjct: 802 ACSCGDYW 809



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 102/423 (24%), Positives = 192/423 (45%), Gaps = 77/423 (18%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++VK+ F+ D+F    L   Y+ C +V +AR VFD   + D+VSWN+++ GY +NG    
Sbjct: 160 LLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARM 219

Query: 61  GLKLFDKMPQRND----VSWNSILGG-----LVRF------------------------- 86
            L++ + M + N     ++  S+L       L+R                          
Sbjct: 220 ALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVD 279

Query: 87  -----GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
                GS+  A  +F+ M +R++VSW  +I  + QN  PKEA+ +F++M    ++P    
Sbjct: 280 MYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVS 339

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           ++  L ACA LG L+ G +++    +  +  +  +  +LI MY KC  +D A  +F    
Sbjct: 340 VMGALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQ 399

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS------HLGW 255
            + + ++ + I G A NG  IEA   F  M+++ + PD+ +Y++V++A +      H  W
Sbjct: 400 SRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHAKW 459

Query: 256 V---------EKGFYYFHSMFDVHG---------------IKPELDHYACMVDLLGRAGL 291
           +         +K  +   ++ D++                 +  +  +  M+D  G  G+
Sbjct: 460 IHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGI 519

Query: 292 LEEAENFIASM---PMKPDNVIWGTLLGACRVHRNAEMGQRIGNML-----IESDQNHDG 343
            + A      M    ++P+ V + +++ AC      E G +  +M+     IE   +H G
Sbjct: 520 GKAALELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMKENYSIEPSMDHYG 579

Query: 344 RYI 346
             +
Sbjct: 580 AMV 582



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 155/327 (47%), Gaps = 48/327 (14%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++ KN    +   +  L+  +   G V +A  VF+  D    V + +M+ G+ +  ++ +
Sbjct: 59  LIFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDK 118

Query: 61  GLKLFDKMPQRND----VSWN------------------SILGGLVRFG----------- 87
            LK F +M  R+D    V +N                   I G LV+ G           
Sbjct: 119 ALKFFVRM--RDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGL 176

Query: 88  --------SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS 139
                    V +A +VF++MP+R LVSW  +++G++QNG  + AL +   M   +L+P+ 
Sbjct: 177 ENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSF 236

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
             +VS+L A + L  +  G  ++ Y  +        +  AL+DMYAKCGS+  A  +F  
Sbjct: 237 ITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDG 296

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
             +++V ++ S I     N +  EA  +F+ M  +G+ P  +S +  L AC+ LG +E+G
Sbjct: 297 MLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERG 356

Query: 260 FYYFHSMFDVHGIKPELDHYACMVDLL 286
             + H +     ++ ELD    +V+ L
Sbjct: 357 -RFIHKL----SVELELDRNVSVVNSL 378



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 109/233 (46%), Gaps = 2/233 (0%)

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
           R+GSVD+A RVF  + K+  V +  ++ GFA+     +AL  F  M+  ++EP       
Sbjct: 81  RYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTY 140

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           LL  C     L  G  ++  + K    LD      L +MYAKC  +  A +VF    ++D
Sbjct: 141 LLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERD 200

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           + ++ + + G + NG +  A E+   M  + + P  I+ ++VL A S L  +  G    H
Sbjct: 201 LVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIG-KEIH 259

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
                 G    ++    +VD+  + G L+ A      M ++ + V W +++ A
Sbjct: 260 GYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGM-LERNVVSWNSMIDA 311



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 79/158 (50%), Gaps = 12/158 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V++N    +VFV  +L+  Y+ CG +  AR +FD   +  V +WN+MI+GY  +G    
Sbjct: 463 VVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGIGKA 522

Query: 61  GLKLFDKMPQ----RNDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLI 111
            L+LF++M +     N V++ S++      G V+   + F+ M +      S+  +  ++
Sbjct: 523 ALELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMKENYSIEPSMDHYGAMV 582

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
               + GR  EA     +M    ++P   +  ++L AC
Sbjct: 583 DLLGRAGRLNEAWDFIMQM---PVKPAVNVYGAMLGAC 617



 Score = 42.4 bits (98), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 40/194 (20%), Positives = 77/194 (39%), Gaps = 5/194 (2%)

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           LL  C+ L  L +   +   I K  +  + +    L+ ++ + GS+D A +VF     K 
Sbjct: 43  LLERCSSLKELRH---ILPLIFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKL 99

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
              Y + + G A      +A + F  M+   + P   ++  +L  C     +  G    H
Sbjct: 100 NVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVG-KEIH 158

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
            +    G   +L     + ++  +   + EA      MP + D V W T++     +  A
Sbjct: 159 GLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPER-DLVSWNTIVAGYSQNGMA 217

Query: 325 EMGQRIGNMLIESD 338
            M   + N++ E +
Sbjct: 218 RMALEMVNLMCEEN 231


>gi|356518836|ref|XP_003528083.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 568

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/437 (45%), Positives = 290/437 (66%), Gaps = 2/437 (0%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQ--SLD 134
           N+++      GS+  + ++F++MP+R L+SW  LIS FA+ G P EAL LF++MQ    D
Sbjct: 132 NALINSYGTSGSLHASLKLFDEMPRRDLISWSSLISCFAKRGLPDEALTLFQQMQLKESD 191

Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
           + P+  +++S++SA + LGAL+ G WV+++I +  + L   L +ALIDMY++CG ID ++
Sbjct: 192 ILPDGVVMLSVISAVSSLGALELGIWVHAFISRIGVNLTVSLGSALIDMYSRCGDIDRSV 251

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
           +VF     ++V  +T+ I GLA++G   EA E F +M   G+ PD I+++ VL ACSH G
Sbjct: 252 KVFDEMPHRNVVTWTALINGLAVHGRGREALEAFYDMVESGLKPDRIAFMGVLVACSHGG 311

Query: 255 WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTL 314
            VE+G   F SM+  +GI+P L+HY CMVDLLGRAG++ EA +F+  M ++P++VIW TL
Sbjct: 312 LVEEGRRVFSSMWSEYGIEPALEHYGCMVDLLGRAGMVLEAFDFVEGMRVRPNSVIWRTL 371

Query: 315 LGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIK 374
           LGAC  H    + ++    + E D +HDG Y+LLSN Y         E VR +MR+ KI 
Sbjct: 372 LGACVNHNLLVLAEKAKERIKELDPHHDGDYVLLSNAYGGVGNWVKKEGVRNSMRESKIV 431

Query: 375 RAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEE 434
           + PG SL+ +D V HEF++GD SH + +EI +F   ++  +K  GY   T++V+ DI+EE
Sbjct: 432 KEPGLSLVHIDQVAHEFVSGDNSHPQWEEITRFLGSVIDTVKLGGYTPSTKNVLHDIQEE 491

Query: 435 EKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDR 494
           EKE  +GYHSEKLA+AF L+  +    IR++KN+RIC DCHS MK VS  F R I IRDR
Sbjct: 492 EKEHSLGYHSEKLAVAFVLLYHRDRKTIRVIKNLRICYDCHSFMKHVSGFFDRDIVIRDR 551

Query: 495 KHYHHFEDGSCSCLEYW 511
             +HHF  GSCSC ++W
Sbjct: 552 SRFHHFRKGSCSCRDFW 568


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 204/477 (42%), Positives = 299/477 (62%), Gaps = 4/477 (0%)

Query: 37  SDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVF 96
           S D  +   N++   Y + G++ E  ++F++MP ++ VSWN+IL G V  G +D+A   F
Sbjct: 325 SLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFF 384

Query: 97  NQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALD 156
            +MP+R+L++W V+ISG AQNG  +E+L LF  M+S   EP        + ACA L AL 
Sbjct: 385 EEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALM 444

Query: 157 YGNWVYSYIQKKCIKLDSILCA--ALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFG 214
           +G  +++ + +  +  DS L A  ALI MYAKCG ++ A  +F +    D  ++ + I  
Sbjct: 445 HGRQLHAQLVR--LGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAA 502

Query: 215 LAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP 274
           L  +GH  +A ELFE M  + I PD I+++ VLS CSH G VE+G  YF SM  ++GI P
Sbjct: 503 LGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICP 562

Query: 275 ELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNML 334
             DHYA M+DLL RAG   EA++ I +MP++P   IW  LL  CR+H N ++G +    L
Sbjct: 563 GEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMDLGIQAAERL 622

Query: 335 IESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAG 394
            E    HDG Y+LLSN+Y    + ++  +VRK MR + +K+ PGCS IE++  VH FL  
Sbjct: 623 FELMPQHDGTYVLLSNMYATVGRWDDVAKVRKLMRDKGVKKEPGCSWIEVENKVHVFLVD 682

Query: 395 DRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLI 454
           D  H + Q +Y + EE+  K++  GY  +T+ V+ D+E E+KE V+  HSEKLA+ FGL+
Sbjct: 683 DIVHPEVQAVYNYLEELGLKMRKLGYIPDTKFVLHDMESEQKEYVLSTHSEKLAVGFGLL 742

Query: 455 CTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
               G+ +R+ KN+RIC DCH+A K +SKV +R+I +RD K +HHF++G CSC  YW
Sbjct: 743 KLPLGATVRVFKNLRICGDCHNAFKFMSKVVEREIVVRDGKRFHHFKNGECSCGNYW 799



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 101/381 (26%), Positives = 160/381 (41%), Gaps = 77/381 (20%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGR---------VRDARWVFDESDDLDVVSWNSMINGY 52
           VVK+   +   V N+L+  +  C           +  AR +FDE  + D +SW +MI GY
Sbjct: 176 VVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGY 235

Query: 53  VRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLIS 112
           VRNGE+    +  D M ++  V+WN+++ G V  G                         
Sbjct: 236 VRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFF----------------------- 272

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK- 171
                    EAL +FR+M  L ++ +     S+LSACA  G   +G  V++YI +   + 
Sbjct: 273 --------LEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRP 324

Query: 172 -LDSILCA--ALIDMYAKCGSIDLAMQVFHSYGDKD-------VSAYTSA---------- 211
            LD  L    AL  +Y KCG +D A QVF+    KD       +S Y +A          
Sbjct: 325 SLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFF 384

Query: 212 --------------IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVE 257
                         I GLA NG   E+ +LF  MKS+G  P   ++   + AC+ L  + 
Sbjct: 385 EEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALM 444

Query: 258 KGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
            G    H+     G    L     ++ +  + G++E A     +MP   D+V W  ++ A
Sbjct: 445 HG-RQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYL-DSVSWNAMIAA 502

Query: 318 CRVHRNAEMGQRIGNMLIESD 338
              H +      +  ++++ D
Sbjct: 503 LGQHGHGAQALELFELMLKED 523



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 133/317 (41%), Gaps = 49/317 (15%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPK--RS 103
           N +I+ Y ++ +++    LFD++ Q + V+  +++      G+ + A  +F   P   R 
Sbjct: 54  NRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRD 113

Query: 104 LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA----------CAQL- 152
            V +  +I+G++ N     A+ LFR++      P++    S+L A          C Q+ 
Sbjct: 114 TVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIH 173

Query: 153 -GALDYGN-WVYSYIQK------KC----------------------IKLDSILCAALID 182
              +  G+ +V S +        KC                       + D +    +I 
Sbjct: 174 CAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIA 233

Query: 183 MYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSIS 242
            Y + G +D A Q      +K V A+ + I G   +G  +EA E+F  M   GI  D  +
Sbjct: 234 GYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFT 293

Query: 243 YIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA----CMVDLLGRAGLLEEAENF 298
           Y +VLSAC++ G+   G    H+       +P LD        +  L  + G ++EA   
Sbjct: 294 YTSVLSACANAGFFLHG-KQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQV 352

Query: 299 IASMPMKPDNVIWGTLL 315
              MP+K D V W  +L
Sbjct: 353 FNQMPVK-DLVSWNAIL 368



 Score = 43.1 bits (100), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 6/124 (4%)

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
           M +   +P   IL  L+    +   L   + ++  I++  I   + L AA    ++  G+
Sbjct: 41  MIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIAA----HSSAGN 96

Query: 190 IDLAMQVFHS--YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVL 247
            +LA ++F +   G +D   Y + I G + N     A ELF ++   G  PD+ ++ +VL
Sbjct: 97  SNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFTSVL 156

Query: 248 SACS 251
            A +
Sbjct: 157 GALA 160


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/549 (36%), Positives = 321/549 (58%), Gaps = 40/549 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           ++N F  +V ++ +L+  Y+ C  +  AR +F+  +  + V W++MI GYV +  I + L
Sbjct: 237 IRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDAL 296

Query: 63  KLFDKM--------------------PQRNDVS--------------------WNSILGG 82
            L+D M                     Q  D+                      NS++  
Sbjct: 297 ALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISM 356

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G +D+A    ++M  +  VS+  +ISG  QNG  ++AL +FR+MQS  + P    +
Sbjct: 357 YAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETM 416

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           ++LL AC+ L AL +G   + Y   +    D+ +C A+IDMY+KCG I ++ ++F    +
Sbjct: 417 IALLPACSHLAALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQN 476

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           +D+ ++ + I G  ++G  +EA  LF+ +++ G+ PD ++ IAVLSACSH G V +G Y+
Sbjct: 477 RDIISWNTMIIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYW 536

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F SM     IKP + HY CMVDLL RAG L+EA  FI  MP  P+  IWG LL ACR H+
Sbjct: 537 FSSMSQNFNIKPRMAHYICMVDLLARAGNLDEAYTFIQRMPFVPNVRIWGALLAACRTHK 596

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           N EMG+++   +        G ++L+SNIY    + ++A  +R   R    K++PGCS +
Sbjct: 597 NIEMGEQVSKKIQLLGPEGTGNFVLMSNIYSSVGRWDDAAYIRSIQRHHGYKKSPGCSWV 656

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E+ GV+H F+ G +SH ++  I +  +E++ ++K  GY  ++  V+ D+EEEEKE ++ Y
Sbjct: 657 EISGVIHVFIGGHQSHPQSASINKKLQELLVQMKKLGYRADSSFVLHDVEEEEKEQILLY 716

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSEK+A+AFG++ T P S I + KN+RIC DCHSA+K ++ + +R+I++RD   +HHF+D
Sbjct: 717 HSEKVAIAFGILNTSPSSRILVTKNLRICVDCHSAIKFITLLTEREITVRDASRFHHFKD 776

Query: 503 GSCSCLEYW 511
           G C+C ++W
Sbjct: 777 GICNCQDFW 785



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 144/338 (42%), Gaps = 52/338 (15%)

Query: 27  VRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWN--------- 77
           ++ AR VFD+     VV WN MI  Y  +G   + + L+  M Q      N         
Sbjct: 57  IQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKA 116

Query: 78  ------------------------------SILGGLVRFGSVDDACRVFNQMPK--RSLV 105
                                         ++L    + G +  A  +FN +    R +V
Sbjct: 117 CSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIV 176

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           +W  +I+ F+ +    + +    +MQ   + PNS+ LVS+L    Q  AL  G  +++Y 
Sbjct: 177 AWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYY 236

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
            +     + +L  AL+DMYAKC  +  A ++F++   K+   +++ I G  ++    +A 
Sbjct: 237 IRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDAL 296

Query: 226 ELFENMKS-KGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYAC--- 281
            L+++M    G++P   +   +L AC+ L  +++G          H IK  +D       
Sbjct: 297 ALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRG-----KKLHCHMIKSGMDLDTTVGN 351

Query: 282 -MVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
            ++ +  + G+++ A  F+  M  K D V +  ++  C
Sbjct: 352 SLISMYAKCGIMDNAVGFLDEMIAK-DTVSYSAIISGC 388



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 115/237 (48%), Gaps = 14/237 (5%)

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           A  VF+Q+PK S+V W ++I  +A +G  ++++ L+  M  L + P +     LL AC+ 
Sbjct: 60  ARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKACSS 119

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH--SYGDKDVSAYT 209
           L AL  G  ++++     + +D  +  AL+ MYAKCG +  A  +F+  S+ D+D+ A+ 
Sbjct: 120 LQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIVAWN 179

Query: 210 SAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS-----HLGWVEKGFYYFH 264
           + I   + +    +       M+  G++P+S + +++L         H G     +Y  +
Sbjct: 180 AMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIRN 239

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
             FD   ++  L      +D+  +  LL  A     ++  K D V W  ++G   +H
Sbjct: 240 FFFDNVVLQTAL------LDMYAKCHLLFYARKIFNTVNKKND-VCWSAMIGGYVLH 289



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 110/232 (47%), Gaps = 40/232 (17%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K+    D  V NSLI  Y+ CG + +A    DE    D VS++++I+G V+NG   + 
Sbjct: 338 MIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKA 397

Query: 62  LKLFDKMPQ--------------------------------------RNDVS-WNSILGG 82
           L +F +M                                         ND S  N+I+  
Sbjct: 398 LLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCHGYTVVRGFTNDTSICNAIIDM 457

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G +  +  +F++M  R ++SW  +I G+  +G   EAL+LF+E+Q+L L+P+   L
Sbjct: 458 YSKCGKITISREIFDRMQNRDIISWNTMIIGYGIHGLCVEALSLFQELQALGLKPDDVTL 517

Query: 143 VSLLSACAQLGALDYGN-WVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLA 193
           +++LSAC+  G +  G  W  S  Q   IK        ++D+ A+ G++D A
Sbjct: 518 IAVLSACSHSGLVTEGKYWFSSMSQNFNIKPRMAHYICMVDLLARAGNLDEA 569



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 2/133 (1%)

Query: 190 IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
           I LA  VF       V  +   I   A +G   ++  L+ +M   G++P + ++  +L A
Sbjct: 57  IQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKA 116

Query: 250 CSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKP-DN 308
           CS L  ++ G    H+   + G+  +L     ++ +  + G L +A+    S+  +  D 
Sbjct: 117 CSSLQALQLG-RLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDI 175

Query: 309 VIWGTLLGACRVH 321
           V W  ++ A   H
Sbjct: 176 VAWNAMIAAFSFH 188


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 223/553 (40%), Positives = 322/553 (58%), Gaps = 48/553 (8%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDE---SDDLDVVSWNSMINGYVRNGEI 58
           V+K     + FV+ SLI  Y  C  +  AR VFDE   S +L  V +N++I GY  N   
Sbjct: 82  VIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNL-AVCYNALIAGYSLNSRF 140

Query: 59  LEGLKLFDKMPQRNDVSWNSI--------------LG------------GL--------- 83
            + + LF +M ++  VS N++              LG            GL         
Sbjct: 141 SDAVLLFRQM-RKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVGNC 199

Query: 84  -----VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPN 138
                VR GSVD A ++F+ MP++ L++W  +ISG+AQNG     L L+R+M+   + P+
Sbjct: 200 LLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPD 259

Query: 139 SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH 198
              LV +LS+CA LGA   G  V   I+      +  L  ALI+MYA+CG++  A  +F 
Sbjct: 260 PVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFD 319

Query: 199 SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEK 258
              +K+V ++T+ I G  M+G    A +LF+ M S    PD  ++++VLSACSH G  EK
Sbjct: 320 GMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTEK 379

Query: 259 GFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
           G YYF +M   +G++P  +HY+C+VDLLGRAG LEEA   I SM ++PD  +WG LLGAC
Sbjct: 380 GLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWGALLGAC 439

Query: 319 RVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPG 378
           ++HRN E+ +     +IE +  + G Y+LLSNI+ E    E    VR  MR+RK+K+ PG
Sbjct: 440 KIHRNVELAELAFEKVIEFEPTNIGYYVLLSNIFSEAGNMEGILRVRVMMRERKLKKEPG 499

Query: 379 CSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKET 438
           CS +E  G +H FLAGDR+H + QEIY   + +   IK  G + +      +   EE  T
Sbjct: 500 CSYVEYQGRIHLFLAGDRTHPQAQEIYHMLDGLEDIIKRRGGSNDNDQ---ESRNEELIT 556

Query: 439 VIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYH 498
            +G HSEKLA+AFGLI T+PG+ I ++KN+R+C DCH  +KLVS++  R++ +RD   +H
Sbjct: 557 GMGVHSEKLAIAFGLINTEPGTEITVIKNLRVCGDCHLFLKLVSEIVDRQLVVRDATRFH 616

Query: 499 HFEDGSCSCLEYW 511
           HF++G CSC +YW
Sbjct: 617 HFKNGVCSCKDYW 629



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 104/218 (47%), Gaps = 6/218 (2%)

Query: 101 KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNW 160
           + +  SW   +   A+    +EAL L+ +M +    PN+        +CA L     G+ 
Sbjct: 18  QNTTASWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQ 77

Query: 161 VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVF-HSYGDKDVSA-YTSAIFGLAMN 218
           ++ ++ K   + +  +  +LI MY KC +I  A +VF  ++  ++++  Y + I G ++N
Sbjct: 78  LHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLN 137

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF-YYFHSMFDVHGIKPELD 277
               +A  LF  M+ +G+S ++++ + ++  C+  G +  GF    H+     G+  +L 
Sbjct: 138 SRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCA--GPIHLGFGTSLHACSVRFGLDGDLS 195

Query: 278 HYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
              C++ +  R G ++ A      MP K   + W  ++
Sbjct: 196 VGNCLLTMYVRCGSVDFARKLFDGMPEK-GLITWNAMI 232


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/551 (38%), Positives = 320/551 (58%), Gaps = 42/551 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K+   +D+FV N+LI  Y+  G + DAR  F +    DVVSWNS+I  Y +N + +  
Sbjct: 342 VIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTA 401

Query: 62  LKLFDKM-------------------PQRND---------------------VSWNSILG 81
              F KM                    Q  D                     V  N+++ 
Sbjct: 402 HGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVD 461

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL-DLEPNSA 140
              + G +D A +VF  +  + ++SW  LI+G+AQNG   EA+ +++ M+   ++ PN  
Sbjct: 462 MYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQG 521

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
             VS+L A A +GAL  G  ++  + K  + LD  +   LID+Y KCG +  AM +F+  
Sbjct: 522 TWVSILPAYAHVGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQV 581

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
             +    + + I    ++GH+ +  +LF  M  +G+ PD ++++++LSACSH G+VE+G 
Sbjct: 582 PQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGK 641

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
           + F  M + +GIKP L HY CMVDLLGRAG LE A  FI  MP++PD  IWG LLGACR+
Sbjct: 642 WCFRLMQE-YGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGALLGACRI 700

Query: 321 HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS 380
           H N E+G+   + L E D  + G Y+LLSNIY    K E  ++VR   R+R +K+ PG S
Sbjct: 701 HGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWS 760

Query: 381 LIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVI 440
            IE++  V  F  G++SH K +EIY+    +  K+K+ GY  +   V+ D+EE+EKE ++
Sbjct: 761 TIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHIL 820

Query: 441 GYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF 500
             HSE+LA+AFG+I T P S IRI KN+R+C DCH+A K +S++ +R+I +RD   +HHF
Sbjct: 821 TSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHF 880

Query: 501 EDGSCSCLEYW 511
           +DG CSC +YW
Sbjct: 881 KDGICSCGDYW 891



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 114/381 (29%), Positives = 189/381 (49%), Gaps = 56/381 (14%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           K  F ++VFV  SLI  YS  G    AR +FD+    D+ SWN+MI+G ++NG   + L 
Sbjct: 243 KLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALD 302

Query: 64  LFDKM-------------------PQRNDVSW--------------------NSILGGLV 84
           + D+M                   PQ  D+S                     N+++    
Sbjct: 303 VLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYA 362

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
           +FG+++DA + F QM    +VSW  +I+ + QN  P  A   F +MQ    +P+   LVS
Sbjct: 363 KFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVS 422

Query: 145 LLSACAQLGALDYGNWVYSYIQKKC-IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           L S  AQ         V+ +I ++  +  D ++  A++DMYAK G +D A +VF     K
Sbjct: 423 LASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVK 482

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKS-KGISPDSISYIAVLSACSHLGWVEKGFYY 262
           DV ++ + I G A NG + EA E+++ M+  K I P+  +++++L A +H+G +++G   
Sbjct: 483 DVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQG--- 539

Query: 263 FHSMFDVHG--IKP--ELDHY--ACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLG 316
                 +HG  IK    LD +   C++D+ G+ G L +A +    +P +  +V W  ++ 
Sbjct: 540 ----MRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQE-SSVTWNAIIS 594

Query: 317 ACRVHRNAEMGQRI-GNMLIE 336
              +H +AE   ++ G ML E
Sbjct: 595 CHGIHGHAEKTLKLFGEMLDE 615



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 117/233 (50%), Gaps = 6/233 (2%)

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL-DLEPNSAILVS 144
            G V  +   F+Q+P++ + +W  +IS +  NG   EA+  F ++  + ++ P+      
Sbjct: 164 LGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPP 223

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           +L AC   G L  G  ++ +  K   + +  + A+LI MY++ G   +A  +F     +D
Sbjct: 224 VLKAC---GTLVDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRD 280

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           + ++ + I GL  NG++ +A ++ + M+ +GI  + ++ +++L  C  LG +       H
Sbjct: 281 MGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAM-LIH 339

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
                HG++ +L     ++++  + G LE+A      M +  D V W +++ A
Sbjct: 340 LYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFIT-DVVSWNSIIAA 391


>gi|297848728|ref|XP_002892245.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338087|gb|EFH68504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 664

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/514 (40%), Positives = 312/514 (60%), Gaps = 5/514 (0%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDL----DVVSWNSMINGYVRNGE 57
            +KN    D FV+ SL+  Y+  G++  A  VF+E+ D      ++ WN ++NGY R  +
Sbjct: 152 TLKNFVDCDSFVRVSLVDMYAKTGQLNHAFQVFEETPDRIKKESILLWNVLVNGYCRAKD 211

Query: 58  ILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQN 117
           +     LF  MP+RN  SW++++ G V  G ++ A ++F  MP++++VSW  LI+GF+Q 
Sbjct: 212 MQMATTLFRSMPERNSGSWSTLIKGYVDNGELNRAKQLFELMPEKNVVSWTTLINGFSQT 271

Query: 118 GRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILC 177
           G  + A++ + EM    L+PN   + ++LSAC++ GAL  G  ++ YI    IKLD  + 
Sbjct: 272 GDYETAISTYFEMLEKGLKPNEYTVAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIG 331

Query: 178 AALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGIS 237
            +L+DMYAKCG +D A  VF +   KD+ ++T+ I G A++G   +A + F  M   G  
Sbjct: 332 TSLLDMYAKCGEVDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEK 391

Query: 238 PDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAEN 297
           PD + ++AVL+AC + G V+ G  +F SM   + I+P L HY  +VDLLGRAG L+EA  
Sbjct: 392 PDEVVFLAVLTACLNSGEVDLGLNFFDSMRLDYAIEPTLKHYVLVVDLLGRAGKLDEAHE 451

Query: 298 FIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLK 357
            +  MP+ PD   W  L  AC+ H++      + N+L E D    G YI L   +    K
Sbjct: 452 LVEYMPINPDLTTWAALYRACKAHKSNRTDIVLQNLL-ELDPELRGSYIFLDKTHAAKGK 510

Query: 358 GENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKN 417
            ++ E+ R +++K+  +R+ GCS IELD  +++F A D +H++ QEI    E I+     
Sbjct: 511 YQDVEKRRLSLQKKVKERSMGCSYIELDCQLNKFAADDYTHKQAQEIRLKLEGIISLAIE 570

Query: 418 YGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSA 477
            GY       + DIEEEEKE+V G HSEKLAL  GL+ T PG+ IRI+KN+RIC DCHS 
Sbjct: 571 RGYIPGADWSIHDIEEEEKESVTGIHSEKLALTLGLLRTAPGTTIRIIKNLRICGDCHSL 630

Query: 478 MKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           MK VSK+ +R I +RD + +HHF+DGSCSC +YW
Sbjct: 631 MKYVSKISQRGILLRDARQFHHFKDGSCSCGDYW 664



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 66/300 (22%), Positives = 118/300 (39%), Gaps = 68/300 (22%)

Query: 88  SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLS 147
           S D +  +F    +R+   +  LI G  +N R + ++  F  M +L ++P+      +L 
Sbjct: 75  SPDYSLSIFRNSEERNPFVFNALIRGLTENARFECSVRHFILMLTLGVKPDRLTFPFVLK 134

Query: 148 ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV----------- 196
           + ++LG    G  +++   K  +  DS +  +L+DMYAK G ++ A QV           
Sbjct: 135 SNSKLGFRWLGRALHAATLKNFVDCDSFVRVSLVDMYAKTGQLNHAFQVFEETPDRIKKE 194

Query: 197 ------------------------FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFE--- 229
                                   F S  +++  ++++ I G   NG    A +LFE   
Sbjct: 195 SILLWNVLVNGYCRAKDMQMATTLFRSMPERNSGSWSTLIKGYVDNGELNRAKQLFELMP 254

Query: 230 ----------------------------NMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
                                        M  KG+ P+  +  AVLSACS  G +  G  
Sbjct: 255 EKNVVSWTTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTVAAVLSACSKSGALGSGIR 314

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
               + D +GIK +      ++D+  + G ++ A    ++M  K D + W  ++    VH
Sbjct: 315 IHGYILD-NGIKLDRAIGTSLLDMYAKCGEVDCAATVFSNMNHK-DILSWTAMIQGWAVH 372



 Score = 46.2 bits (108), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 53/261 (20%), Positives = 113/261 (43%), Gaps = 17/261 (6%)

Query: 119 RPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCA 178
           +PK + A           P+ +  +SL+  C    +L     V+++I ++ + L S + A
Sbjct: 9   KPKSSPAKIYFPADRRASPDESHFISLIHTCKDTVSL---RLVHAHILRRGV-LSSRVAA 64

Query: 179 ALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISP 238
            L+   +   S D ++ +F +  +++   + + I GL  N     +   F  M + G+ P
Sbjct: 65  QLVSCSSLLKSPDYSLSIFRNSEERNPFVFNALIRGLTENARFECSVRHFILMLTLGVKP 124

Query: 239 DSISYIAVLSACSHLG--WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAE 296
           D +++  VL + S LG  W+ +     H+    + +  +      +VD+  + G L  A 
Sbjct: 125 DRLTFPFVLKSNSKLGFRWLGRA---LHAATLKNFVDCDSFVRVSLVDMYAKTGQLNHAF 181

Query: 297 NFIASMP---MKPDNVIWGTLL-GACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIY 352
                 P    K   ++W  L+ G CR  ++ +M   +   + E +    G +  L   Y
Sbjct: 182 QVFEETPDRIKKESILLWNVLVNGYCRA-KDMQMATTLFRSMPERNS---GSWSTLIKGY 237

Query: 353 VETLKGENAEEVRKTMRKRKI 373
           V+  +   A+++ + M ++ +
Sbjct: 238 VDNGELNRAKQLFELMPEKNV 258


>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 595

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/513 (40%), Positives = 324/513 (63%), Gaps = 12/513 (2%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGY----------VRNGEIL 59
           +VF+ N+LI+ Y+  G    A  ++ E      V  ++    +          VR GE +
Sbjct: 84  NVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRLGETI 143

Query: 60  EGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGR 119
             + +         V  NS+L      G V  A +VF++MP++ LV+W  +I+GFA+NG+
Sbjct: 144 HSVVIRSGFGSLIYVQ-NSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGK 202

Query: 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
           P+EALAL+ EM    ++P+   +VSLLSACA++GAL  G   + Y+ K  +  +      
Sbjct: 203 PEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLTRNLHSSNV 262

Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK-GISP 238
           L+D+YA+CG ++ A  +F    DK+  ++TS I GLA+NG   EA ELF+NM+SK G+ P
Sbjct: 263 LLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLP 322

Query: 239 DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENF 298
             I+++ +L ACSH G V++GF YF  M + + I+P ++H+ CMVDLL RAG +++A  +
Sbjct: 323 CEITFVGILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAYEY 382

Query: 299 IASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKG 358
           I  MPM+P+ VIW TLLGAC VH ++++ +     +++ + NH G Y+LLSN+Y    + 
Sbjct: 383 ILKMPMQPNVVIWRTLLGACTVHGDSDLAELARMKILQLEPNHSGDYVLLSNMYASEQRW 442

Query: 359 ENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNY 418
            + +++RK M +  +++ PG SL+E+   VHEFL GD+SH +   IY   +E+  +++  
Sbjct: 443 SDVQKIRKQMLRDGVRKVPGHSLVEVGNRVHEFLMGDKSHPQNDMIYAKLKEMTDRLRLE 502

Query: 419 GYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAM 478
           GY  +  +V  D+EEEEKE  + YHSEK+A+AF LI T     IR+VKN+++C+DCH A+
Sbjct: 503 GYVPQISNVYVDVEEEEKENALVYHSEKIAIAFMLISTPERWPIRVVKNLKVCADCHLAI 562

Query: 479 KLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           KLVSKV+ R+I +RDR  +HHF++GSCSC +YW
Sbjct: 563 KLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 120/226 (53%), Gaps = 4/226 (1%)

Query: 92  ACRVFNQMPKR-SLVSWVVLISGFAQNGRPKEALALFREMQSLD-LEPNSAILVSLLSAC 149
           A +VF+++ K  ++  W  LI G+A+ G    A++L+REM++   +EP++     LL A 
Sbjct: 72  AHKVFSKIEKPINVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAV 131

Query: 150 AQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYT 209
            ++  +  G  ++S + +        +  +L+ +YA CG +  A +VF    +KD+ A+ 
Sbjct: 132 GKMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWN 191

Query: 210 SAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDV 269
           S I G A NG   EA  L+  M  KGI PD  + +++LSAC+ +G +  G  +   M  V
Sbjct: 192 SVINGFAENGKPEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKV 251

Query: 270 HGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
            G+   L     ++DL  R G +EEA+     M  K ++V W +L+
Sbjct: 252 -GLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDK-NSVSWTSLI 295



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 114/241 (47%), Gaps = 51/241 (21%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V+++ F   ++V+NSL+  Y+ CG V  A  VFD+  + D+V+WNS+ING+  NG+  E
Sbjct: 146 VVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEE 205

Query: 61  GLKLFDKMP---------------------------------------QRNDVSWNSILG 81
            L L+ +M                                         RN  S N +L 
Sbjct: 206 ALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLTRNLHSSNVLLD 265

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD-LEPNSA 140
              R G V++A  +F++M  ++ VSW  LI G A NG  KEA+ LF+ M+S + L P   
Sbjct: 266 LYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLPCEI 325

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKC------IKLDSILCAALIDMYAKCGSIDLAM 194
             V +L AC+  G +  G   + Y ++         +++   C  ++D+ A+ G +  A 
Sbjct: 326 TFVGILYACSHCGMVKEG---FEYFRRMSEEYKIEPRIEHFGC--MVDLLARAGQVKKAY 380

Query: 195 Q 195
           +
Sbjct: 381 E 381


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/520 (40%), Positives = 310/520 (59%), Gaps = 11/520 (2%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
            K   +  +FV N L+  Y  CG + +AR V DE    DVVSWNS++ GY +N    + L
Sbjct: 167 TKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDAL 226

Query: 63  KLFDKMPQ---RNDVSWNSILGGLVRFGSVDDACRV---FNQMPKRSLVSWVVLISGFAQ 116
           ++  +M      +D    + L   V   + ++   V   F +M K+SLVSW V+I  + +
Sbjct: 227 EVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMK 286

Query: 117 NGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSIL 176
           N  P EA+ L+  M++   EP++  + S+L AC    AL  G  ++ YI++K +  + +L
Sbjct: 287 NAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLL 346

Query: 177 CAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGI 236
             ALIDMYAKCG ++ A  VF +   +DV ++T+ I     +G   +A  LF  ++  G+
Sbjct: 347 ENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGL 406

Query: 237 SPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAE 296
            PDSI+++  L+ACSH G +E+G   F  M D + I P L+H ACMVDLLGRAG ++EA 
Sbjct: 407 VPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAY 466

Query: 297 NFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETL 356
            FI  M M+P+  +WG LLGACRVH + ++G    + L +      G Y+LLSNIY +  
Sbjct: 467 RFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAG 526

Query: 357 KGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIK 416
           + E    +R  M+ + +K+ PG S +E++ ++H FL GDRSH ++ EIY+  + +VKK+K
Sbjct: 527 RWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVKKMK 586

Query: 417 NYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTK-----PGSVIRIVKNIRIC 471
             GY  ++ S + D+EEE+KET +  HSEKLA+ F L+ TK       + IRI KN+RIC
Sbjct: 587 ELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTKEEEEDSNNTIRITKNLRIC 646

Query: 472 SDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            DCH A KL+S++  R+I IRD   +H F  G CSC +YW
Sbjct: 647 GDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCGDYW 686



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 144/319 (45%), Gaps = 30/319 (9%)

Query: 73  DVSWNSILG-GLVR-FGSVDD---ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALF 127
           D+  NS LG  L+R + S+ D   A +VF+++P+R+++   V+I  +  NG   E + +F
Sbjct: 69  DLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVF 128

Query: 128 REMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC 187
             M   ++ P+      +L AC+  G +  G  ++    K  +     +   L+ MY KC
Sbjct: 129 GTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKC 188

Query: 188 GSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVL 247
           G +  A  V      +DV ++ S + G A N    +A E+   M+S  IS D+ +  ++L
Sbjct: 189 GFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLL 248

Query: 248 SACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP---M 304
            A S+     +   Y   MF   G K  L  +  M+ +  +  +  EA    + M     
Sbjct: 249 PAVSNT--TTENVMYVKDMFFKMG-KKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGF 305

Query: 305 KPDNVIWGTLLGAC----------RVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVE 354
           +PD V   ++L AC          ++H   E  + I N+L+E+          L ++Y +
Sbjct: 306 EPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLEN---------ALIDMYAK 356

Query: 355 TLKGENAEEVRKTMRKRKI 373
               E A +V + M+ R +
Sbjct: 357 CGCLEKARDVFENMKSRDV 375



 Score = 45.8 bits (107), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 2/155 (1%)

Query: 161 VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGH 220
           V+S I  + ++ +S L   L+  YA    +  A +VF    +++V      I     NG 
Sbjct: 61  VHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGF 120

Query: 221 SIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA 280
             E  ++F  M    + PD  ++  VL ACS  G +  G     S   V G+   L    
Sbjct: 121 YGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKV-GLSSTLFVGN 179

Query: 281 CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
            +V + G+ G L EA   +  M  + D V W +L+
Sbjct: 180 GLVSMYGKCGFLSEARLVLDEMSRR-DVVSWNSLV 213


>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Vitis vinifera]
          Length = 632

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/477 (41%), Positives = 314/477 (65%), Gaps = 12/477 (2%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N++++ Y ++G + E  ++F +M  ++ VSW  IL G++R   V +   VF++MP+R+ V
Sbjct: 157 NAVMDMYAKSGLMGEARRVFYEMKGQSVVSWTVILDGVIRSEGVRNGRVVFDEMPERNEV 216

Query: 106 SWVVLISGFAQNGRPKEALALFREMQ-SLDLEPNSAILVSLLSACAQLGALDYGNWVYSY 164
           +W ++I+G+  +G  +E+ AL REM   L++E N   L S+L+AC+Q G L  G WV++Y
Sbjct: 217 AWTIMIAGYLDSGLTQESFALVREMIFDLEMELNYVTLCSILTACSQSGDLMMGRWVHAY 276

Query: 165 -IQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIE 223
            ++ K  +L+ ++  A++DMYAKCG I +A + F     ++V ++ + + GLAM+G    
Sbjct: 277 ALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKFFKKMPQRNVVSWNAMLSGLAMHGLGRA 336

Query: 224 AFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMV 283
           A ++F  M  K   PD +++ +VLSACSH G V++G +YF ++  V+GI P+++HYACMV
Sbjct: 337 ALDIFPQM-FKEAKPDDVTFTSVLSACSHSGLVDQGCFYFGNLESVYGITPKVEHYACMV 395

Query: 284 DLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDG 343
           DLLGRAG LEEAE  +  MP++P+ V+ G+LLG+C +H   ++G+ +   L++ D  +  
Sbjct: 396 DLLGRAGRLEEAEILVREMPIRPNEVVLGSLLGSCSIHGKLQLGEHLLQELVQLDPQNTE 455

Query: 344 RYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQE 403
            +ILLSN+Y    K   A  +R+ ++KR IK+ PG S I + G VH+F AGD+SH +T+E
Sbjct: 456 YHILLSNMYALAGKQNRANSLRQVLKKRGIKKVPGMSSIHVGGQVHQFSAGDKSHPRTRE 515

Query: 404 IYQFWEEIVKKIKNYGYNVETRSVMFD---------IEEEEKETVIGYHSEKLALAFGLI 454
           +Y   +E++ +++  GY   T    F          +E+EEKE  +  HSEKLA+ FGLI
Sbjct: 516 VYNMLDEMIPRLRLAGYAPNTALQTFAGCDSLEDDLVEQEEKEQALFSHSEKLAICFGLI 575

Query: 455 CTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            T PG  + I KN+RIC DCHSA+K+VSK++ R+I IRDR  +H F++GSCSC +YW
Sbjct: 576 STGPGVPLHIFKNLRICQDCHSAIKIVSKIYNREIVIRDRNRFHCFKEGSCSCCDYW 632



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 104/224 (46%), Gaps = 31/224 (13%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM- 68
           ++ V  +++  Y+ CGR+  A   F +    +VVSWN+M++G   +G     L +F +M 
Sbjct: 286 NIMVGTAMVDMYAKCGRIHIAFKFFKKMPQRNVVSWNAMLSGLAMHGLGRAALDIFPQMF 345

Query: 69  --PQRNDVSWNSILGGLVRFGSVDDACRVFNQM-------PKRSLVSWVVLISGFAQNGR 119
              + +DV++ S+L      G VD  C  F  +       PK  +  +  ++    + GR
Sbjct: 346 KEAKPDDVTFTSVLSACSHSGLVDQGCFYFGNLESVYGITPK--VEHYACMVDLLGRAGR 403

Query: 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDS----- 174
            +EA  L REM    + PN  +L SLL +C+  G L  G     ++ ++ ++LD      
Sbjct: 404 LEEAEILVREM---PIRPNEVVLGSLLGSCSIHGKLQLGE----HLLQELVQLDPQNTEY 456

Query: 175 -ILCAALIDMYAKCGSIDLA---MQVFHSYGDKDVSAYTSAIFG 214
            IL   L +MYA  G  + A    QV    G K V   +S   G
Sbjct: 457 HIL---LSNMYALAGKQNRANSLRQVLKKRGIKKVPGMSSIHVG 497



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 63/279 (22%), Positives = 116/279 (41%), Gaps = 35/279 (12%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPK--RSLVSWVVLISGFAQNGRPKEALALFREMQSLD 134
           N++L      G    A +VF+++P   +  V W  L+  F ++    EAL +F EM+   
Sbjct: 54  NALLQFYASCGCAWQARKVFDEIPHSHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCG 113

Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
           ++P+   LV L   CA+LG +  G   +  + K  +      C A++DMYAK G +  A 
Sbjct: 114 VKPDEVTLVCLFGGCARLGDVVVGAQGHGCMVKMGLGGVEKACNAVMDMYAKSGLMGEAR 173

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK---------------GISPD 239
           +VF+    + V ++T  + G+  +        +F+ M  +               G++ +
Sbjct: 174 RVFYEMKGQSVVSWTVILDGVIRSEGVRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQE 233

Query: 240 SISYI-----------------AVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACM 282
           S + +                 ++L+ACS  G +  G +           +  +     M
Sbjct: 234 SFALVREMIFDLEMELNYVTLCSILTACSQSGDLMMGRWVHAYALKTKEKELNIMVGTAM 293

Query: 283 VDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           VD+  + G +  A  F   MP + + V W  +L    +H
Sbjct: 294 VDMYAKCGRIHIAFKFFKKMPQR-NVVSWNAMLSGLAMH 331


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/541 (39%), Positives = 325/541 (60%), Gaps = 39/541 (7%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DV V  +L++ Y  CG + +AR +FD   + D++SW  MI  Y ++G   E  +L  +M 
Sbjct: 163 DVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQME 222

Query: 70  QR----NDVSWNSIL---------------------GGL--------------VRFGSVD 90
           Q     N +++ SIL                      GL               + GS+D
Sbjct: 223 QEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSID 282

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           DA  VF++M  R +VSW V+I  FA++GR  EA  LF +MQ+   +P++ + +S+L+ACA
Sbjct: 283 DARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACA 342

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
             GAL++   ++ +     +++D  +  AL+ MY+K GSID A  VF     ++V ++ +
Sbjct: 343 SAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNA 402

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I GLA +G   +A E+F  M + G+ PD ++++AVLSACSH G V++G   + +M  V+
Sbjct: 403 MISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVY 462

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
           GI+P++ H  CMVDLLGRAG L EA+ FI +M + PD   WG LLG+CR + N E+G+ +
Sbjct: 463 GIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALLGSCRTYGNVELGELV 522

Query: 331 GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHE 390
               ++ D  +   Y+LLSNIY E  K +    VR  MR+R I++ PG S IE+D  +H+
Sbjct: 523 AKERLKLDPKNAATYVLLSNIYAEAGKWDMVSWVRTMMRERGIRKEPGRSWIEVDNKIHD 582

Query: 391 FLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALA 450
           FL  D SH + +EI +  +++++KIK  GY  +TR V+ +   ++KE  I  HSEKLA+ 
Sbjct: 583 FLVADSSHPECKEINESKDKVIEKIKAEGYIPDTRLVLKNKNMKDKELDICSHSEKLAIV 642

Query: 451 FGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEY 510
           +GL+ T PG+ IR+ KN+R+C+DCH A KL+SKV  R+I +RD   +HHF+DG CSC +Y
Sbjct: 643 YGLMHTPPGNPIRVFKNLRVCTDCHGATKLISKVEGREIIVRDANRFHHFKDGVCSCGDY 702

Query: 511 W 511
           W
Sbjct: 703 W 703



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 107/362 (29%), Positives = 181/362 (50%), Gaps = 47/362 (12%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K+    +  V N+L+  Y  CGR+++AR VFD        SWN+MI GYV +    + 
Sbjct: 54  IIKSRMEQNAHVMNNLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDA 113

Query: 62  LKLFDKM----PQRNDVSWNSIL---------------------GGL---VRF------- 86
           ++LF +M     Q N  ++  IL                     GGL   VR        
Sbjct: 114 MRLFREMCHEGVQPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRM 173

Query: 87  ----GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
               GS+++A R+F+ +    ++SW V+I  +AQ+G  KEA  L  +M+    +PN+   
Sbjct: 174 YGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITY 233

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           VS+L+ACA  GAL +   V+ +     ++LD  +  AL+ MYAK GSID A  VF     
Sbjct: 234 VSILNACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKV 293

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG---WVEKG 259
           +DV ++   I   A +G   EA++LF  M+++G  PD+I ++++L+AC+  G   WV+K 
Sbjct: 294 RDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKK- 352

Query: 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACR 319
               H      G++ ++     +V +  ++G +++A      M ++ + V W  ++    
Sbjct: 353 ---IHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVR-NVVSWNAMISGLA 408

Query: 320 VH 321
            H
Sbjct: 409 QH 410



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 105/270 (38%), Gaps = 83/270 (30%)

Query: 8   AYDVFV-------KNSLIQFYSV---CGRVRDARWV-------FDESDDLDVVSWNSMIN 50
           AYD+F+       K   I F S+   C       WV        D   ++DV    ++++
Sbjct: 315 AYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVGTALVH 374

Query: 51  GYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVL 110
            Y ++G I +   +FD+M  RN VSWN+++ GL + G   DA                  
Sbjct: 375 MYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQHGLGQDA------------------ 416

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVY-SYIQKKC 169
                        L +FR M +  ++P+    V++LSAC+  G +D G   Y +  Q   
Sbjct: 417 -------------LEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYG 463

Query: 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFE 229
           I+ D   C  ++D+  + G +                               +EA    +
Sbjct: 464 IEPDVSHCNCMVDLLGRAGRL-------------------------------MEAKLFID 492

Query: 230 NMKSKGISPDSISYIAVLSACSHLGWVEKG 259
           NM    + PD  ++ A+L +C   G VE G
Sbjct: 493 NM---AVDPDEATWGALLGSCRTYGNVELG 519


>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
 gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 197/497 (39%), Positives = 313/497 (62%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDV 74
           N++I  ++   ++  AR +F      +VV+WN+MI+GYV  G++   LKLF+K P ++ V
Sbjct: 73  NTMITGFAQNQQMDKARDLFLIMPTKNVVTWNAMISGYVECGDLDSALKLFEKAPFKSVV 132

Query: 75  SWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD 134
           +W +++ G ++ G +  A R+F +MP+++LV+W  +I+G+ +N R ++ + LFR M    
Sbjct: 133 AWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFG 192

Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
           ++PNS+ L S L  C++L AL  G  V+  + K  +  D+    +LI MY KCG ++   
Sbjct: 193 IQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGW 252

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
           ++F     +DV  + + I G A +G   +A  LF+ M  KG+ PD I+++AVL AC+H G
Sbjct: 253 KLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWITFVAVLMACNHAG 312

Query: 255 WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTL 314
           + + G  YFHSM   +G+  + DHY CMVDLLGRAG L EA + I  MP KP   ++GTL
Sbjct: 313 FTDLGVKYFHSMAKDYGLVAKPDHYTCMVDLLGRAGKLVEAVDLIEKMPFKPHAAVFGTL 372

Query: 315 LGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIK 374
           LGACR+H+N EM +     L+  D      Y+ L+N+Y  T + ++   VRK+M+  K+ 
Sbjct: 373 LGACRIHKNTEMAEFASQKLLNLDPASATGYVQLANVYAATKRWDHVARVRKSMKSCKVV 432

Query: 375 RAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEE 434
           + PG S IE+  + H+F +GD+ H +   I+   +E+ KK+K  GY  +    + D+ EE
Sbjct: 433 KTPGYSWIEVKSMAHQFRSGDKFHPELASIHGKLKELEKKMKLAGYVPDLEFALHDVGEE 492

Query: 435 EKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDR 494
           +KE ++ +HSEKLA+A+GLI   PG+ IR+ KN+R+C DCH A+K +S++ +R+I +RD 
Sbjct: 493 QKEQLLLWHSEKLAIAYGLIKLPPGTPIRVFKNLRVCGDCHRAIKYISQIERREIIVRDT 552

Query: 495 KHYHHFEDGSCSCLEYW 511
             +HHF+DG CSC +YW
Sbjct: 553 TRFHHFKDGHCSCADYW 569



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 139/302 (46%), Gaps = 11/302 (3%)

Query: 42  VVSWNSMINGYVRN-GEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMP 100
            V+WNS++ G  +  G++ E  +LF K+P+ + VS+N++L   VR  +++ A   F  MP
Sbjct: 6   TVTWNSVLAGMSKKRGKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAFFEDMP 65

Query: 101 KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNW 160
            +   SW  +I+GFAQN +  +A  LF  M +     N     +++S   + G LD    
Sbjct: 66  IKDTPSWNTMITGFAQNQQMDKARDLFLIMPT----KNVVTWNAMISGYVECGDLDSALK 121

Query: 161 VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGH 220
           ++     K +    +   A+I  Y K G I LA ++F    +K++  + + I G   N  
Sbjct: 122 LFEKAPFKSV----VAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHR 177

Query: 221 SIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA 280
           + +  +LF  M   GI P+S +  + L  CS L  ++ G    H +     +  +     
Sbjct: 178 AEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLG-RQVHQLVCKSPLCDDTTAGT 236

Query: 281 CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQN 340
            ++ +  + G+LE+       +P + D V W  ++     H   +    + + +IE    
Sbjct: 237 SLISMYCKCGVLEDGWKLFVQVPRR-DVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMK 295

Query: 341 HD 342
            D
Sbjct: 296 PD 297



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 81/158 (51%), Gaps = 12/158 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V K+    D     SLI  Y  CG + D   +F +    DVV+WN+MI+GY ++GE  +
Sbjct: 222 LVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKK 281

Query: 61  GLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKR-SLVS----WVVLI 111
            L LFD+M ++    + +++ ++L      G  D   + F+ M K   LV+    +  ++
Sbjct: 282 ALGLFDEMIEKGMKPDWITFVAVLMACNHAGFTDLGVKYFHSMAKDYGLVAKPDHYTCMV 341

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
               + G+  EA+ L  +M     +P++A+  +LL AC
Sbjct: 342 DLLGRAGKLVEAVDLIEKM---PFKPHAAVFGTLLGAC 376


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 226/536 (42%), Positives = 310/536 (57%), Gaps = 38/536 (7%)

Query: 12  FVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVR---NGEILEGLKLFDKM 68
           F+ N LI  Y   G + DA+ VFD+  D +VVSW +MI+ Y     N + LE L L  + 
Sbjct: 1   FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLRE 60

Query: 69  PQR-NDVSWNSIL---GGLV-----------------------------RFGSVDDACRV 95
             R N  +++S+L    GL                              R+G +++A RV
Sbjct: 61  GVRPNMFTYSSVLRACDGLFNLRQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRV 120

Query: 96  FNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGAL 155
           F++M    LV W  +I+GFAQN    EAL LF+ M+          L S+L AC  L  L
Sbjct: 121 FDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALL 180

Query: 156 DYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGL 215
           + G  V+ ++ K     D IL  AL+DMY KCGS++ A  VF    +KDV ++++ I GL
Sbjct: 181 ELGRQVHVHVLK--YDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGL 238

Query: 216 AMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE 275
           A NG+S EA +LFE+MK  GI P+ ++ + VL ACSH G VE+G YYFHSM ++ GI P 
Sbjct: 239 AQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPG 298

Query: 276 LDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLI 335
            +HY CM+DLLGRAG L EA + I  M  +PD V W  LL ACRVHRN ++       ++
Sbjct: 299 REHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAIHAAKQIL 358

Query: 336 ESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGD 395
             D    G Y+LLSNIY  T +  +  EVR+TM  R IK+ PGCS IE+   +H F+ GD
Sbjct: 359 RLDPQDAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEVSKQIHAFILGD 418

Query: 396 RSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLIC 455
           RSH + +EI     +++ K+   GY  +T  V+ D+E E+ +  + YHSEKLA+ FGL+ 
Sbjct: 419 RSHPQIREINIQLNQLIYKLMGVGYVPDTNFVLQDLEGEQMQDSLRYHSEKLAIVFGLMS 478

Query: 456 TKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
              G  IRI KN+RIC DCH   KL++K+ +R I IRD   YHHF+DG CSC ++W
Sbjct: 479 LPRGQTIRIRKNLRICGDCHLFTKLLAKMEQRIIVIRDPVRYHHFQDGLCSCGDFW 534



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 131/288 (45%), Gaps = 74/288 (25%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K     DVFV+++LI  YS  G + +A  VFDE    D+V W+S+I G+ +N +  E 
Sbjct: 89  IIKIGLDSDVFVRSALIDVYSRWGELENALRVFDEMVTGDLVVWSSIIAGFAQNSDGDEA 148

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRF----------------------------------- 86
           L+LF +M +   ++  + L  ++R                                    
Sbjct: 149 LRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQVHVHVLKYDQDLILNNALLDMYC 208

Query: 87  --GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
             GS++DA  VF +M ++ ++SW  +I+G AQNG  KEAL LF  M+ L ++PN   +V 
Sbjct: 209 KCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVG 268

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSIL--CAALIDMYAKCGSIDLAMQVFHSYGD 202
           +L AC+  G ++ G + Y +  K+   +D        +ID+  + G +            
Sbjct: 269 VLFACSHAGLVEEGLY-YFHSMKELFGIDPGREHYGCMIDLLGRAGRLS----------- 316

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250
                               EA +L   M+ +   PD++++ A+L+AC
Sbjct: 317 --------------------EAVDLINEMECE---PDAVTWRALLNAC 341


>gi|242047142|ref|XP_002461317.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
 gi|241924694|gb|EER97838.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
          Length = 640

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 205/458 (44%), Positives = 294/458 (64%), Gaps = 10/458 (2%)

Query: 64  LFDKM-PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKE 122
           LFD M P  + VS  ++L    + G +DDA  +F+ +P + L+ W  ++ G+ Q+GRP E
Sbjct: 183 LFDGMQPDPHVVSVTAMLTCYAKMGLLDDARSLFDGLPSKDLICWNAMMDGYTQHGRPSE 242

Query: 123 ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI---QKKCIKLDSILCAA 179
           AL LFR M    +EP+   +V  LSA AQLG  + G W++S++     + ++L++ +  A
Sbjct: 243 ALRLFRRMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVTNSSSRRVRLNARVGTA 302

Query: 180 LIDMYAKCGSIDLAMQVFH--SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGIS 237
           LIDMY KCGS++ A+ VF     GD+D+ A+ + + G AM+GHS EA   F  ++++G+ 
Sbjct: 303 LIDMYYKCGSLEDAVAVFGDLGAGDRDIVAWNAMVNGYAMHGHSREALAAFGQLRAQGLW 362

Query: 238 PDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAEN 297
           P  I++I VL+ACSH G V++G   F SM + +GI+P+++HY CMVDLLGRAG +EEA  
Sbjct: 363 PTDITFIGVLNACSHSGLVDEGRELFRSMAEEYGIEPKVEHYGCMVDLLGRAGRVEEAFE 422

Query: 298 FIASMP-MKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETL 356
            + SM   KPD V+W +LL ACR+H+N E+GQRI + L+ +   + G Y+LLSN+Y    
Sbjct: 423 LVQSMTRTKPDAVMWASLLAACRLHKNMELGQRIADHLVANGLANSGTYVLLSNMYAAAG 482

Query: 357 KGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIK 416
                  VR  MR   I++ PGCS +E+   V EF+AGDRSH +  EIY   EE+    +
Sbjct: 483 NWREVGRVRAMMRASGIQKEPGCSAVEVGRRVVEFVAGDRSHPRAAEIYAKLEEVNGMAR 542

Query: 417 NYGYNVETRSVMFDIE---EEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSD 473
             G+   T  V+ D++      KE  +  HSEKLALAFGLI T PG+ I+IVKN+R C+D
Sbjct: 543 ARGHVPRTELVLHDLDDDDTAAKEQALAVHSEKLALAFGLISTPPGTAIKIVKNLRACAD 602

Query: 474 CHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           CH+ +KLVS+V  RKI  RDR  +HHF DGSC+C +YW
Sbjct: 603 CHAVLKLVSEVTGRKIVFRDRNRFHHFVDGSCTCGDYW 640



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/283 (21%), Positives = 122/283 (43%), Gaps = 82/283 (28%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM------ 68
            +++  Y+  G + DAR +FD     D++ WN+M++GY ++G   E L+LF +M      
Sbjct: 197 TAMLTCYAKMGLLDDARSLFDGLPSKDLICWNAMMDGYTQHGRPSEALRLFRRMLRSGVE 256

Query: 69  -------------------------------PQRNDVSWNSILGGLV-----RFGSVDDA 92
                                               V  N+ +G  +     + GS++DA
Sbjct: 257 PDEVSVVLALSAVAQLGTAESGRWLHSFVTNSSSRRVRLNARVGTALIDMYYKCGSLEDA 316

Query: 93  CRVFNQMPK--RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
             VF  +    R +V+W  +++G+A +G  +EALA F ++++  L P     + +L+AC+
Sbjct: 317 VAVFGDLGAGDRDIVAWNAMVNGYAMHGHSREALAAFGQLRAQGLWPTDITFIGVLNACS 376

Query: 151 QLGALDYGNWVYSYIQKKC---IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSA 207
             G +D G  ++  + ++     K++   C  ++D+  + G ++                
Sbjct: 377 HSGLVDEGRELFRSMAEEYGIEPKVEHYGC--MVDLLGRAGRVE---------------- 418

Query: 208 YTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250
                          EAFEL ++M      PD++ + ++L+AC
Sbjct: 419 ---------------EAFELVQSMTR--TKPDAVMWASLLAAC 444


>gi|357141422|ref|XP_003572219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Brachypodium distachyon]
          Length = 571

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/436 (45%), Positives = 279/436 (63%), Gaps = 6/436 (1%)

Query: 78  SILGGLVRFGSVDDACRVFNQMP--KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDL 135
           S+L      G +  A  VF++ P  +R L  W  L+  +   G     L LFR+M + D 
Sbjct: 140 SMLSFYAAAGDLPAAREVFDRSPPNQRDLALWNSLLHAYLSQGLYTHVLRLFRQMVATD- 198

Query: 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ 195
                 L++++SAC+ LGALD G W ++Y  + C      L  AL++MY +CG ++ A  
Sbjct: 199 ---EVTLLAVVSACSHLGALDTGRWAHAYHARTCRNTTRNLGTALLNMYMRCGDVESAWS 255

Query: 196 VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGW 255
           VFH   DKDV  ++  I GLA+NG   +A +LF  MK+ G+ PDSI+  AVLSACSH G 
Sbjct: 256 VFHEMLDKDVRTWSVMIAGLAVNGLPRDALKLFAEMKNIGVDPDSITMTAVLSACSHAGM 315

Query: 256 VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
           V++G  + H M   + ++P ++HY C+VDLLGRAG LEEA   I ++P K D  +WG LL
Sbjct: 316 VDEGKMFLHCMPIEYHLQPTIEHYGCVVDLLGRAGQLEEALALIETVPFKADVALWGALL 375

Query: 316 GACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKR 375
            ACR H+N +MGQ     +++ D +H G  + LSN Y    K +  +EVR +M++ +I +
Sbjct: 376 VACRAHKNVDMGQMAAMEILKLDPHHAGACVFLSNAYAAAGKWDLVQEVRSSMKEHRIYK 435

Query: 376 APGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEE 435
            PG S++ELDGVV+EFL+GD SH ++  IY   +E+ K +   G+   T+ V FDI+EE+
Sbjct: 436 PPGSSIVELDGVVYEFLSGDHSHPQSDRIYAMLDEVCKTLSLKGHRPSTKEVAFDIDEED 495

Query: 436 KETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRK 495
           KE  I  HSEKLALA GLI T+ G+VIRIVKN+RIC DCHS MK+VS+V+ R I +RDR 
Sbjct: 496 KEVCISQHSEKLALALGLISTRRGAVIRIVKNLRICEDCHSVMKIVSEVYDRVIVVRDRN 555

Query: 496 HYHHFEDGSCSCLEYW 511
            +HHF++GSCSCL+YW
Sbjct: 556 RFHHFKNGSCSCLDYW 571



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 96/186 (51%), Gaps = 37/186 (19%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDES--DDLDVVSWNSMINGYVRNGEILEGLKLFDK 67
           D F+  S++ FY+  G +  AR VFD S  +  D+  WNS+++ Y+  G     L+LF +
Sbjct: 134 DRFISASMLSFYAAAGDLPAAREVFDRSPPNQRDLALWNSLLHAYLSQGLYTHVLRLFRQ 193

Query: 68  MPQRNDVSWNSI------LGGL-----------------------------VRFGSVDDA 92
           M   ++V+  ++      LG L                             +R G V+ A
Sbjct: 194 MVATDEVTLLAVVSACSHLGALDTGRWAHAYHARTCRNTTRNLGTALLNMYMRCGDVESA 253

Query: 93  CRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQL 152
             VF++M  + + +W V+I+G A NG P++AL LF EM+++ ++P+S  + ++LSAC+  
Sbjct: 254 WSVFHEMLDKDVRTWSVMIAGLAVNGLPRDALKLFAEMKNIGVDPDSITMTAVLSACSHA 313

Query: 153 GALDYG 158
           G +D G
Sbjct: 314 GMVDEG 319



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 105/261 (40%), Gaps = 57/261 (21%)

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLE-PNSAILVSLLSACAQLGALD------YG 158
           S+   I   A   RP  A+AL+R M    L  PN+     LL+ACA+L           G
Sbjct: 59  SYNTTIRSLAHGPRPHLAVALYRSMLLNPLSNPNNYTYPPLLAACARLLPAHPPREAAAG 118

Query: 159 NWVYSYIQKKCIK-LDSILCAALIDMYAKCGSIDLAMQVF--HSYGDKDVSAYTSAIFGL 215
             V++ + ++ ++  D  + A+++  YA  G +  A +VF       +D++ + S +   
Sbjct: 119 TAVHASLFRRGLESRDRFISASMLSFYAAAGDLPAAREVFDRSPPNQRDLALWNSLLHAY 178

Query: 216 AMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG------W-------------- 255
              G       LF  M    ++ D ++ +AV+SACSHLG      W              
Sbjct: 179 LSQGLYTHVLRLFRQM----VATDEVTLLAVVSACSHLGALDTGRWAHAYHARTCRNTTR 234

Query: 256 ---------------VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
                          VE  +  FH M D      ++  ++ M+  L   GL  +A    A
Sbjct: 235 NLGTALLNMYMRCGDVESAWSVFHEMLD-----KDVRTWSVMIAGLAVNGLPRDALKLFA 289

Query: 301 SMP---MKPDNVIWGTLLGAC 318
            M    + PD++    +L AC
Sbjct: 290 EMKNIGVDPDSITMTAVLSAC 310



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 89/194 (45%), Gaps = 19/194 (9%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ---- 70
            +L+  Y  CG V  A  VF E  D DV +W+ MI G   NG   + LKLF +M      
Sbjct: 238 TALLNMYMRCGDVESAWSVFHEMLDKDVRTWSVMIAGLAVNGLPRDALKLFAEMKNIGVD 297

Query: 71  RNDVSWNSILGGLVRFGSVDDACRVFNQMP-----KRSLVSWVVLISGFAQNGRPKEALA 125
            + ++  ++L      G VD+     + MP     + ++  +  ++    + G+ +EALA
Sbjct: 298 PDSITMTAVLSACSHAGMVDEGKMFLHCMPIEYHLQPTIEHYGCVVDLLGRAGQLEEALA 357

Query: 126 LFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD---SILCAALID 182
           L   ++++  + + A+  +LL AC     +D G      I    +KLD   +  C  L +
Sbjct: 358 L---IETVPFKADVALWGALLVACRAHKNVDMGQMAAMEI----LKLDPHHAGACVFLSN 410

Query: 183 MYAKCGSIDLAMQV 196
            YA  G  DL  +V
Sbjct: 411 AYAAAGKWDLVQEV 424


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/551 (38%), Positives = 315/551 (57%), Gaps = 40/551 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDA-RWVFDESDDLDVVSWNSMINGYVRNGEIL 59
           M  K     DVFV N+LI  Y  CG V +A + VFD  D   V SWN+++ GY +N +  
Sbjct: 233 MATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPR 292

Query: 60  EGLKLFDKMPQRN-DVSW-------------------NSILGGLVRFGSVDD-------- 91
           + L L+ +M     D  W                     I G  +R G   D        
Sbjct: 293 KALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLL 352

Query: 92  -----------ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
                      A  +F+ M  RSLVSW V+I+G++QNG P EA+ LFR+M S  ++P   
Sbjct: 353 SLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEI 412

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
            ++ +  AC+QL AL  G  ++ +  K  +  D  + +++IDMYAK G I L+ ++F   
Sbjct: 413 AIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRL 472

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
            +KDV+++   I G  ++G   EA ELFE M   G+ PD  ++  +L ACSH G VE G 
Sbjct: 473 REKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGL 532

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
            YF+ M ++H I+P+L+HY C+VD+LGRAG +++A   I  MP  PD+ IW +LL +CR+
Sbjct: 533 EYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRI 592

Query: 321 HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS 380
           H N  +G+++ N L+E +      Y+L+SN++  + K ++   VR  M+   +++  GCS
Sbjct: 593 HGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCS 652

Query: 381 LIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVI 440
            IE+ G VH FL GD    + +E+ + W  +  KI + GY  +T SV+ D+EEE+K  ++
Sbjct: 653 WIEVGGKVHNFLIGDEMLPELEEVRETWRRLEVKISSIGYTPDTGSVLHDLEEEDKIGIL 712

Query: 441 GYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF 500
             HSEKLA++FGL+ T  G  +R+ KN+RIC DCH+A K +SKV  R I +RD K +HHF
Sbjct: 713 RGHSEKLAISFGLLNTAKGLPVRVYKNLRICGDCHNAAKFISKVVNRDIVVRDNKRFHHF 772

Query: 501 EDGSCSCLEYW 511
            DG CSC +YW
Sbjct: 773 RDGICSCGDYW 783



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 160/360 (44%), Gaps = 47/360 (13%)

Query: 5   NSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRN--------- 55
             F  D  +   +I  YS+CG   D+R VFD+    ++  WN++++ Y RN         
Sbjct: 135 TQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSI 194

Query: 56  --------------------------------GEILEGLKLFDKMPQRNDV-SWNSILGG 82
                                           G+I+ G+    KM   +DV   N+++  
Sbjct: 195 FSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMA--TKMDLVSDVFVGNALIAM 252

Query: 83  LVRFGSVDDAC-RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
             + G V++A  RVF+ M  +++ SW  L+ G+AQN  P++AL L+ +M    L+P+   
Sbjct: 253 YGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFT 312

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           + SLL AC+++ +L YG  ++ +  +  + +D  +  +L+ +Y  CG    A  +F    
Sbjct: 313 IGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGME 372

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
            + + ++   I G + NG   EA  LF  M S GI P  I+ + V  ACS L  +  G  
Sbjct: 373 HRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKE 432

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
                   H +  ++   + ++D+  + G +  ++     +  K D   W  ++    +H
Sbjct: 433 LHCFALKAH-LTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREK-DVASWNVIIAGYGIH 490



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 54/254 (21%), Positives = 104/254 (40%), Gaps = 20/254 (7%)

Query: 111 ISGFAQNGRPKEALALFREMQS---LDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK 167
           I    ++G  KEAL   +       LD    S  +  LL AC Q   ++ G  ++  +  
Sbjct: 74  IKKLCESGNLKEALDFLQRESDDVVLDSAQRSEAMGVLLQACGQRKDIEVGRRLHEMVSA 133

Query: 168 KC-IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFE 226
                 D +L   +I MY+ CGS   +  VF     K++  + + +     N    +A  
Sbjct: 134 STQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMS 193

Query: 227 LFENMKS-KGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA----- 280
           +F  + S     PD+ +   V+ AC+  G ++ G         +HG+  ++D  +     
Sbjct: 194 IFSELISVTEHKPDNFTLPCVIKACA--GLLDLGLGQI-----IHGMATKMDLVSDVFVG 246

Query: 281 -CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQ 339
             ++ + G+ GL+EEA   +  +        W  LL  C   +N++  + +   L  +D 
Sbjct: 247 NALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALL--CGYAQNSDPRKALDLYLQMTDS 304

Query: 340 NHDGRYILLSNIYV 353
             D  +  + ++ +
Sbjct: 305 GLDPDWFTIGSLLL 318


>gi|296085287|emb|CBI29019.3| unnamed protein product [Vitis vinifera]
          Length = 408

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/445 (44%), Positives = 286/445 (64%), Gaps = 38/445 (8%)

Query: 68  MPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALF 127
           MP+RN VSWNS+L G V+ G+V++A  +F++MP R +VSW  +++ +AQ G+P EALALF
Sbjct: 1   MPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALF 60

Query: 128 REMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC 187
            +MQ+                                     + ++SI+  AL+DMYAKC
Sbjct: 61  DQMQA-------------------------------------VGVNSIVGTALVDMYAKC 83

Query: 188 GSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVL 247
           G I LA QVF++   KDV A+ + I G+A+ GH  EA +LF+ MK  G+ P+ I+++A+L
Sbjct: 84  GKISLATQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQLFKEMKEAGVEPNDITFVAML 143

Query: 248 SACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPD 307
           SACSH G V++G      M   +GI+P+++HY C++DLL RAGLLEEA   I +MPM+P+
Sbjct: 144 SACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPMEPN 203

Query: 308 NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKT 367
               G LL  CR+H N E+G+ +G  LI     H GRYILLSNIY    K ++A +VR  
Sbjct: 204 PCALGALLEGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNL 263

Query: 368 MRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKN-YGYNVETRS 426
           M+   I + PG S+IEL G+VH F+AGD SH ++ +IY+   EI  ++K+  GY+ +T +
Sbjct: 264 MKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYSADTGN 323

Query: 427 VMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFK 486
            + D+EEE+KE  +  HSEKLA+A+GL+       IRIVKN+R+C DCH   KL+SKV+ 
Sbjct: 324 GLLDMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVTKLISKVYG 383

Query: 487 RKISIRDRKHYHHFEDGSCSCLEYW 511
            +I +RDR  +HHFEDG CSCL++W
Sbjct: 384 GEIIVRDRNRFHHFEDGECSCLDFW 408



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 119/224 (53%), Gaps = 18/224 (8%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDV 74
           NS++  +  CG V +A  +F E    DVVSWNSM+  Y + G+  E L LFD+M     V
Sbjct: 10  NSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQM---QAV 66

Query: 75  SWNSILGGLV-----RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE 129
             NSI+G  +     + G +  A +VFN M  + +++W  +I+G A  G  KEA  LF+E
Sbjct: 67  GVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQLFKE 126

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC---IKLDSILCAALIDMYAK 186
           M+   +EPN    V++LSAC+  G +D G  +   +        K++   C  +ID+ A+
Sbjct: 127 MKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGC--VIDLLAR 184

Query: 187 CGSIDLAMQVFHSYG-DKDVSAYTSAIFGLAMNGHSIEAFELFE 229
            G ++ AM++  +   + +  A  + + G  ++G+    FEL E
Sbjct: 185 AGLLEEAMELIGTMPMEPNPCALGALLEGCRIHGN----FELGE 224



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 12/166 (7%)

Query: 5   NSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKL 64
            +   +  V  +L+  Y+ CG++  A  VF+  +  DV++WN++I G    G + E  +L
Sbjct: 64  QAVGVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQL 123

Query: 65  FDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMP-----KRSLVSWVVLISGFA 115
           F +M +     ND+++ ++L      G VD+  ++ + M      +  +  +  +I   A
Sbjct: 124 FKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLA 183

Query: 116 QNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161
           + G  +EA+ L   M    +EPN   L +LL  C   G  + G  V
Sbjct: 184 RAGLLEEAMELIGTMP---MEPNPCALGALLEGCRIHGNFELGEMV 226


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/549 (39%), Positives = 314/549 (57%), Gaps = 40/549 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +  + F  D F+ NSLI  Y  CG V +A  VFD+    D+VSW S+I GY +N    E 
Sbjct: 77  LASSRFEGDAFLDNSLIHLYCKCGSVVEAHKVFDKMRKKDMVSWTSLIAGYAQNDMPAEA 136

Query: 62  LKLFDKMPQ----RNDVSWNSIL-----------GGLV---------------------- 84
           + L   M +     N  ++ S+L           GG +                      
Sbjct: 137 IGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGIGGQIHALAVKCDWHEDVYVGSALLDM 196

Query: 85  --RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             R G +D A  VF+++  ++ VSW  LISGFA+ G  + AL +F EMQ    E      
Sbjct: 197 YARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTY 256

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S+ S  A +GAL+ G WV++++ K   KL + +   ++DMYAK GS+  A +VF    +
Sbjct: 257 SSIFSGLAGIGALEQGKWVHAHMVKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLN 316

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           KD+  + S +   A  G   EA   FE M+  GI  + I+++ +L+ACSH G V++G +Y
Sbjct: 317 KDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQITFLCILTACSHGGLVKEGKHY 376

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F  M   + ++PE++HY  +VDLLGRAGLL  A  FI  MPM+P   +WG LL ACR+H+
Sbjct: 377 F-DMIKEYNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHK 435

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           NA++GQ   + + + D +  G  +LL NIY  T   + A  VRK M+   +K+ P CS +
Sbjct: 436 NAKVGQFAADHVFQLDPDDSGPPVLLYNIYASTGHWDAAARVRKMMKATGVKKEPACSWV 495

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E+   VH F+A D +H + +EIY+ W+EI  KI+  GY  +   V+  ++E+E+E  + Y
Sbjct: 496 EIGNSVHMFVANDDTHPRAEEIYKMWDEISMKIRKEGYVPDMDYVLLHVDEQEREANLQY 555

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSEK+ALAF LI    G+ IRI+KNIRIC DCHSA K +SKVF+R+I +RD   +HHF +
Sbjct: 556 HSEKIALAFALIQMPAGATIRIMKNIRICGDCHSAFKYISKVFEREIVVRDTNRFHHFSN 615

Query: 503 GSCSCLEYW 511
           GSCSC +YW
Sbjct: 616 GSCSCGDYW 624



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 114/234 (48%), Gaps = 41/234 (17%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + VK  +  DV+V ++L+  Y+ CG++  A  VFD+ D  + VSWN++I+G+ R G+   
Sbjct: 177 LAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGET 236

Query: 61  GLKLFDKMPQRN-----DVSWNSILGGLVRFGSVD------------------------- 90
            L +F +M QRN       +++SI  GL   G+++                         
Sbjct: 237 ALMVFAEM-QRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTAFVGNTML 295

Query: 91  ----------DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
                     DA +VF ++  + LV+W  +++ FAQ G  KEA++ F EM+   +  N  
Sbjct: 296 DMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQI 355

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
             + +L+AC+  G +  G   +  I++  ++ +      ++D+  + G ++ A+
Sbjct: 356 TFLCILTACSHGGLVKEGKHYFDMIKEYNLEPEIEHYVTVVDLLGRAGLLNYAL 409



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 86/193 (44%), Gaps = 14/193 (7%)

Query: 129 EMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCG 188
            + S +L P   +  + ++ACAQ   LD    ++ ++     + D+ L  +LI +Y KCG
Sbjct: 41  HLDSGELAPTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCG 100

Query: 189 SIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248
           S+  A +VF     KD+ ++TS I G A N    EA  L   M      P+  ++ ++L 
Sbjct: 101 SVVEAHKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLK 160

Query: 249 ACSHLGWVEKGFYYFHSMFDVHGIKPELDHY------ACMVDLLGRAGLLEEAENFIASM 302
           A     + + G         +H +  + D +      + ++D+  R G ++ A      +
Sbjct: 161 AAG--AYADSGI-----GGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKL 213

Query: 303 PMKPDNVIWGTLL 315
             K + V W  L+
Sbjct: 214 DSK-NGVSWNALI 225


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 198/549 (36%), Positives = 328/549 (59%), Gaps = 39/549 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +V+     D++  N+L+  YS    +   R VF+     DVVS+N++I GY ++G   + 
Sbjct: 131 IVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDA 190

Query: 62  LKLFDKMP----QRNDVSWNSIL----------------GGLVRFG-------------- 87
           L++  +M     + +  + +S+L                G ++R G              
Sbjct: 191 LRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDM 250

Query: 88  -----SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
                 ++D+ RVF+ + +R  +SW  L++G+ QNGR  EAL LFR+M S  + P +   
Sbjct: 251 YAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAF 310

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S++ ACA L  L  G  ++ Y+ +     +  + +AL+DMY+KCG+I  A ++F     
Sbjct: 311 SSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNL 370

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
            D  ++T+ I G A++GH  EA  LFE MK +G+ P+ ++++AVL+ACSH+G V++ + Y
Sbjct: 371 HDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGY 430

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F+SM  V+G+  EL+HYA + DLLGRAG LEEA +FI+ M ++P   +W TLL +C VH+
Sbjct: 431 FNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCSVHK 490

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           N E+ +++   +   D  + G Y+L+ N+Y    + +   ++R  +RK+ +++ P CS I
Sbjct: 491 NLELAEKVAEKIFTIDSENMGAYVLMCNMYASNGRWKEMAKLRLRVRKKGLRKKPACSWI 550

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E+    H F++GDRSH     I +F + ++++++  GY  +T  V+ D++EE K  ++  
Sbjct: 551 EMKNKTHGFVSGDRSHPSMDRINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFG 610

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSE+LA+AFG+I T+PG+ IR+ KNIRIC+DCH A+K +SK+ +R+I +RD   +HHF  
Sbjct: 611 HSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNR 670

Query: 503 GSCSCLEYW 511
           GSCSC +YW
Sbjct: 671 GSCSCGDYW 679



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 107/227 (47%), Gaps = 2/227 (0%)

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           +A  VF  +    +++W  +I  F        ALA F EM++    P+  +  S+L +C 
Sbjct: 57  EALLVFKTLESPPVLAWKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCT 116

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
            +  L +G  V+ +I +  +  D     AL++MY+K   ID   +VF     KDV +Y +
Sbjct: 117 MMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNT 176

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I G A +G   +A  +   M +  + PD+ +  +VL   S    V KG    H      
Sbjct: 177 VIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKG-KEIHGYVIRK 235

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
           GI  ++   + +VD+  ++  +E++E   + +  + D++ W +L+  
Sbjct: 236 GIDSDVYIGSSLVDMYAKSARIEDSERVFSHL-YRRDSISWNSLVAG 281


>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
          Length = 645

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 203/538 (37%), Positives = 303/538 (56%), Gaps = 39/538 (7%)

Query: 13  VKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKL----FDKM 68
           V  SL+  Y+ CG +  A+ VFDE      VSW ++I  Y+  G++ E + +    F   
Sbjct: 108 VLTSLLTLYARCGLLHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANG 167

Query: 69  PQRNDVSWNSILGGLVRF-----------------------------------GSVDDAC 93
            + +  +   +L    R                                    G +  A 
Sbjct: 168 MRPDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAR 227

Query: 94  RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153
            VF++M  +  V+W  ++ G+A NG P+EAL LF  MQ+  + P+   +   LSAC +LG
Sbjct: 228 EVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLG 287

Query: 154 ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIF 213
           ALD G      +       + +L  ALIDMYAKCGS   A  VF     KD+  + + I 
Sbjct: 288 ALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMIL 347

Query: 214 GLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIK 273
           GL M GH   AF L   M+  G+  +  ++I +L +C+H G ++ G  YFH+M  ++ I 
Sbjct: 348 GLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHIS 407

Query: 274 PELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNM 333
           P ++HY C+VDLL RAGLL+EA   I  MPM  + VI G LLG C++HRNAE+ + +   
Sbjct: 408 PRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQ 467

Query: 334 LIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLA 393
           LI  +  + G Y++LSNIY    + E+A ++R  M+++ +++ P CS +E +G VHEF  
Sbjct: 468 LIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWVEFEGKVHEFRV 527

Query: 394 GDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGL 453
           GD+SH  + +IY+  +E+  ++K  GY   T  VMFD+E+EEKE  + +HSEKLA+AF L
Sbjct: 528 GDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNL 587

Query: 454 ICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           + T PG  IR+ KN+R+CSDCH+A+KL+S++  R+I +RD   +H F DGSCSC +YW
Sbjct: 588 LVTGPGETIRVTKNLRVCSDCHTAIKLISRITHREIIVRDNNRFHCFRDGSCSCNDYW 645



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/265 (31%), Positives = 132/265 (49%), Gaps = 7/265 (2%)

Query: 53  VRNGEILEGLKLFDKMP-QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLI 111
           +R GE L    L  K+P   N     S+L    R G +  A RVF++MP  S VSW  LI
Sbjct: 87  LRAGEQLHARSL--KLPSHTNPHVLTSLLTLYARCGLLHRAQRVFDEMPHPSTVSWTALI 144

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK 171
           + +   G  +EA+ + R   +  + P+S   V +L+ACA++  L  G  V+   +++ I 
Sbjct: 145 TAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETVWRAAEQEGIA 204

Query: 172 LDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM 231
               +  A +D+Y KCG +  A +VF    DKD  A+ + + G A NGH  EA +LF  M
Sbjct: 205 QSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAM 264

Query: 232 KSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM-FDVHGIKPELDHYACMVDLLGRAG 290
           +++G+ PD  +    LSAC+ LG ++ G      + +D     P L     ++D+  + G
Sbjct: 265 QAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLG--TALIDMYAKCG 322

Query: 291 LLEEAENFIASMPMKPDNVIWGTLL 315
              EA      M  K D ++W  ++
Sbjct: 323 STAEAWVVFQQM-RKKDIIVWNAMI 346



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 96/236 (40%), Gaps = 44/236 (18%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           +   A  VFV  + +  Y  CG +  AR VFD+  D D V+W +M+ GY  NG   E L 
Sbjct: 200 QEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALD 259

Query: 64  LFDKMPQ---RND--------------------------VSW-----NSILGGLV----- 84
           LF  M     R D                          V W     N +LG  +     
Sbjct: 260 LFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYA 319

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
           + GS  +A  VF QM K+ ++ W  +I G    G  K A  L  +M+   ++ N    + 
Sbjct: 320 KCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIG 379

Query: 145 LLSACAQLGALDYGNWVYSYIQKK---CIKLDSILCAALIDMYAKCGSIDLAMQVF 197
           LL +C   G +  G   +  + K      +++   C  ++D+ ++ G +  A Q+ 
Sbjct: 380 LLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGC--IVDLLSRAGLLQEAHQLI 433



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 12/158 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           MV  + F  +  +  +LI  Y+ CG   +A  VF +    D++ WN+MI G    G    
Sbjct: 298 MVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKT 357

Query: 61  GLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLI 111
              L  +M +     ND ++  +L      G + D  R F+ M K   +S     +  ++
Sbjct: 358 AFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIV 417

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
              ++ G  +EA  L  +M    +  N+ IL +LL  C
Sbjct: 418 DLLSRAGLLQEAHQLIDDMP---MPANAVILGALLGGC 452


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 203/549 (36%), Positives = 323/549 (58%), Gaps = 40/549 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           V+ SF   V V   L+  Y+ C  +  AR +FD     + VSW++MI GYV +  + E L
Sbjct: 237 VRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEAL 296

Query: 63  KLFDKM--------------------PQRNDVS--------------------WNSILGG 82
           +LFD+M                     +  D+S                     N++L  
Sbjct: 297 ELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSM 356

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G +DDA R F++M  +  VS+  ++SG  QNG    AL++FR MQ   ++P+   +
Sbjct: 357 YAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTM 416

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           + +L AC+ L AL +G   + Y+  +    D+++C ALIDMY+KCG I  A +VF+    
Sbjct: 417 LGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDR 476

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
            D+ ++ + I G  ++G  +EA  LF ++ + G+ PD I++I +LS+CSH G V +G  +
Sbjct: 477 HDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLW 536

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F +M     I P ++H  CMVD+LGRAGL++EA +FI +MP +PD  IW  LL ACR+H+
Sbjct: 537 FDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHK 596

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           N E+G+ +   +        G ++LLSNIY    + ++A  +R T +   +K+ PGCS I
Sbjct: 597 NIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWI 656

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E++G+VH F+ GD+SH +  +I +  EE++ ++K  GY  E   V  D+EEEEKE ++ Y
Sbjct: 657 EINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEEEKEQILLY 716

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSEKLA+AFG++  K G  I + KN+R+C DCH+A+K ++ + KR+I++RD   +HHF++
Sbjct: 717 HSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHTAIKFMTLITKREITVRDANRFHHFKN 776

Query: 503 GSCSCLEYW 511
           G+C+C ++W
Sbjct: 777 GTCNCGDFW 785



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 169/380 (44%), Gaps = 42/380 (11%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +KN+   D  V + L + Y  C +V  AR +FDE  +  V+ WN +I  Y  NG     +
Sbjct: 35  LKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAI 94

Query: 63  KLFDKM----PQRNDVSWNSIL-------------------------------GGLVRF- 86
            L+  M     + N  ++  +L                                 LV F 
Sbjct: 95  DLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFY 154

Query: 87  ---GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
              G + +A R+F+ M  R +V+W  +I+G +  G   +A+ L  +MQ   + PNS+ +V
Sbjct: 155 AKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIV 214

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
            +L    +  AL +G  ++ Y  ++      ++   L+DMYAKC  +  A ++F   G +
Sbjct: 215 GVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVR 274

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSK-GISPDSISYIAVLSACSHLGWVEKGFYY 262
           +  ++++ I G   +    EA ELF+ M  K  + P  ++  +VL AC+ L  + +G   
Sbjct: 275 NEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRG-RK 333

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
            H      G   ++     ++ +  + G++++A  F   M  K D+V +  ++  C  + 
Sbjct: 334 LHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPK-DSVSFSAIVSGCVQNG 392

Query: 323 NAEMGQRIGNMLIESDQNHD 342
           NA +   I  M+  S  + D
Sbjct: 393 NAAVALSIFRMMQLSGIDPD 412



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 151/341 (44%), Gaps = 41/341 (12%)

Query: 48  MINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRF----GSVDDACRVFNQMPKRS 103
           ++   +++  + E  K+     +    + +S+L  L R       V  A R+F+++P  S
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 104 LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYS 163
           ++ W  +I  +A NG    A+ L+  M  L + PN      +L AC+ L A++ G  ++S
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHS 133

Query: 164 YIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIE 223
           + +   ++ D  +C AL+D YAKCG +  A ++F S   +DV A+ + I G ++ G   +
Sbjct: 134 HAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDD 193

Query: 224 AFELFENMKSKGISPDSISYIAVLSACS-----------HLGWVEKGF------------ 260
           A +L   M+ +GI P+S + + VL               H   V + F            
Sbjct: 194 AVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLD 253

Query: 261 --------YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENF---IASMPMKPDNV 309
                    Y   +FDV G++ E+   A +   +    + E  E F   I    M P  V
Sbjct: 254 MYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPV 313

Query: 310 IWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSN 350
             G++L AC    +   G+++   +I+     D   ILL N
Sbjct: 314 TLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLD---ILLGN 351



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 126/288 (43%), Gaps = 43/288 (14%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K     D+ + N+L+  Y+ CG + DA   FDE +  D VS++++++G V+NG     
Sbjct: 338 IIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVA 397

Query: 62  LKLFDKMPQRN-DVSWNSILGGLV------------------------------------ 84
           L +F  M     D    ++LG L                                     
Sbjct: 398 LSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDM 457

Query: 85  --RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G +  A  VFN+M +  +VSW  +I G+  +G   EAL LF ++ +L L+P+    
Sbjct: 458 YSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITF 517

Query: 143 VSLLSACAQLGALDYGN-WVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           + LLS+C+  G +  G  W  +  +   I      C  ++D+  + G ID A     +  
Sbjct: 518 ICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMP 577

Query: 202 -DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248
            + DV  +++ +    ++ +     E+ + ++S G  P+S     +LS
Sbjct: 578 FEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLG--PESTGNFVLLS 623


>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 203/538 (37%), Positives = 303/538 (56%), Gaps = 39/538 (7%)

Query: 13  VKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKL----FDKM 68
           V  SL+  Y+ CG +  A+ VFDE      VSW ++I  Y+  G++ E + +    F   
Sbjct: 155 VLTSLLTLYARCGLLHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANG 214

Query: 69  PQRNDVSWNSILGGLVRF-----------------------------------GSVDDAC 93
            + +  +   +L    R                                    G +  A 
Sbjct: 215 MRPDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAR 274

Query: 94  RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153
            VF++M  +  V+W  ++ G+A NG P+EAL LF  MQ+  + P+   +   LSAC +LG
Sbjct: 275 EVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLG 334

Query: 154 ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIF 213
           ALD G      +       + +L  ALIDMYAKCGS   A  VF     KD+  + + I 
Sbjct: 335 ALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMIL 394

Query: 214 GLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIK 273
           GL M GH   AF L   M+  G+  +  ++I +L +C+H G ++ G  YFH+M  ++ I 
Sbjct: 395 GLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHIS 454

Query: 274 PELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNM 333
           P ++HY C+VDLL RAGLL+EA   I  MPM  + VI G LLG C++HRNAE+ + +   
Sbjct: 455 PRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQ 514

Query: 334 LIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLA 393
           LI  +  + G Y++LSNIY    + E+A ++R  M+++ +++ P CS +E +G VHEF  
Sbjct: 515 LIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWVEFEGKVHEFRV 574

Query: 394 GDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGL 453
           GD+SH  + +IY+  +E+  ++K  GY   T  VMFD+E+EEKE  + +HSEKLA+AF L
Sbjct: 575 GDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNL 634

Query: 454 ICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           + T PG  IR+ KN+R+CSDCH+A+KL+S++  R+I +RD   +H F DGSCSC +YW
Sbjct: 635 LVTGPGETIRVTKNLRVCSDCHTAIKLISRITHREIIVRDNNRFHCFRDGSCSCNDYW 692



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/265 (31%), Positives = 132/265 (49%), Gaps = 7/265 (2%)

Query: 53  VRNGEILEGLKLFDKMP-QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLI 111
           +R GE L    L  K+P   N     S+L    R G +  A RVF++MP  S VSW  LI
Sbjct: 134 LRAGEQLHARSL--KLPSHTNPHVLTSLLTLYARCGLLHRAQRVFDEMPHPSTVSWTALI 191

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK 171
           + +   G  +EA+ + R   +  + P+S   V +L+ACA++  L  G  V+   +++ I 
Sbjct: 192 TAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETVWRAAEQEGIA 251

Query: 172 LDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM 231
               +  A +D+Y KCG +  A +VF    DKD  A+ + + G A NGH  EA +LF  M
Sbjct: 252 QSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAM 311

Query: 232 KSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM-FDVHGIKPELDHYACMVDLLGRAG 290
           +++G+ PD  +    LSAC+ LG ++ G      + +D     P L     ++D+  + G
Sbjct: 312 QAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLG--TALIDMYAKCG 369

Query: 291 LLEEAENFIASMPMKPDNVIWGTLL 315
              EA      M  K D ++W  ++
Sbjct: 370 STAEAWVVFQQM-RKKDIIVWNAMI 393



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 96/236 (40%), Gaps = 44/236 (18%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           +   A  VFV  + +  Y  CG +  AR VFD+  D D V+W +M+ GY  NG   E L 
Sbjct: 247 QEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALD 306

Query: 64  LFDKMPQ---RND--------------------------VSW-----NSILGGLV----- 84
           LF  M     R D                          V W     N +LG  +     
Sbjct: 307 LFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYA 366

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
           + GS  +A  VF QM K+ ++ W  +I G    G  K A  L  +M+   ++ N    + 
Sbjct: 367 KCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIG 426

Query: 145 LLSACAQLGALDYGNWVYSYIQKK---CIKLDSILCAALIDMYAKCGSIDLAMQVF 197
           LL +C   G +  G   +  + K      +++   C  ++D+ ++ G +  A Q+ 
Sbjct: 427 LLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGC--IVDLLSRAGLLQEAHQLI 480



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 12/158 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           MV  + F  +  +  +LI  Y+ CG   +A  VF +    D++ WN+MI G    G    
Sbjct: 345 MVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKT 404

Query: 61  GLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLI 111
              L  +M +     ND ++  +L      G + D  R F+ M K   +S     +  ++
Sbjct: 405 AFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIV 464

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
              ++ G  +EA  L  +M    +  N+ IL +LL  C
Sbjct: 465 DLLSRAGLLQEAHQLIDDMP---MPANAVILGALLGGC 499


>gi|225457409|ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containing protein At3g47530
           [Vitis vinifera]
          Length = 643

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/507 (41%), Positives = 311/507 (61%), Gaps = 10/507 (1%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDV----VSWNSMINGYVRNGEILEGLKLFDKMPQ 70
           N +I+ YS+        +++ E     V    +S + ++   +R   ++ GL++  ++ +
Sbjct: 137 NVMIRAYSMSHSPEQGFYLYREMRRRGVPPNPLSSSFVMKSCIRISSLMGGLQIHARILR 196

Query: 71  RNDVSWNSILGGLVRFGSV----DDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALAL 126
               S N +L  L+   S     ++AC+VF+++P+   VSW VLIS    N R ++AL +
Sbjct: 197 DGHQSDNLLLTTLMDLYSCCDKFEEACKVFDEIPQWDTVSWNVLISCCIHNRRTRDALRM 256

Query: 127 FREMQSL--DLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMY 184
           F  MQS     EP+    + LL ACA LGAL++G  V++YI++        LC +LI MY
Sbjct: 257 FDIMQSTADGFEPDDVTCLLLLQACANLGALEFGERVHNYIEEHGYDGALNLCNSLITMY 316

Query: 185 AKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYI 244
           ++CG ++ A  +F    +++V ++++ I G AM+G+  EA E FE M+  G+SPD  +  
Sbjct: 317 SRCGRLEKAYSIFKRMDERNVVSWSAMISGFAMHGYGREAIEAFEQMQQLGVSPDDQTLT 376

Query: 245 AVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPM 304
            VLSACSH G V+ G  +F  M  V GI+P + HY CMVDLLGRAGLL++A   I SM +
Sbjct: 377 GVLSACSHCGLVDDGLMFFDRMSKVFGIEPNIHHYGCMVDLLGRAGLLDQAYQLIMSMVI 436

Query: 305 KPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEV 364
           KPD+ +W TLLGACR+HR+A +G+R+   LIE      G Y+LL NIY      +   ++
Sbjct: 437 KPDSTLWRTLLGACRIHRHATLGERVIGHLIELKAQEAGDYVLLLNIYSSVGNWDKVTDL 496

Query: 365 RKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVET 424
           RK M+++ I+ +PGCS IEL G VHEF+  D  H +T EIY+  +EI K++K  GY  E 
Sbjct: 497 RKFMKEKGIQTSPGCSTIELKGKVHEFVVDDILHPRTDEIYEMLDEIGKQLKIAGYVAEL 556

Query: 425 RSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKV 484
            S + ++  EEK   + YHSEKLA+AFG++ T PG+ IR+ KN+RIC DCH+  K++S  
Sbjct: 557 SSELHNLGAEEKGNRLSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGA 616

Query: 485 FKRKISIRDRKHYHHFEDGSCSCLEYW 511
           + R++ IRDR  +HHF +G CSC  YW
Sbjct: 617 YNREVVIRDRTRFHHFREGQCSCNGYW 643



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 114/255 (44%), Gaps = 42/255 (16%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++++    D  +  +L+  YS C +  +A  VFDE    D VSWN +I+  + N    + 
Sbjct: 194 ILRDGHQSDNLLLTTLMDLYSCCDKFEEACKVFDEIPQWDTVSWNVLISCCIHNRRTRDA 253

Query: 62  LKLFDKMP------QRNDVS-----------------------------------WNSIL 80
           L++FD M       + +DV+                                    NS++
Sbjct: 254 LRMFDIMQSTADGFEPDDVTCLLLLQACANLGALEFGERVHNYIEEHGYDGALNLCNSLI 313

Query: 81  GGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
               R G ++ A  +F +M +R++VSW  +ISGFA +G  +EA+  F +MQ L + P+  
Sbjct: 314 TMYSRCGRLEKAYSIFKRMDERNVVSWSAMISGFAMHGYGREAIEAFEQMQQLGVSPDDQ 373

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKK-CIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
            L  +LSAC+  G +D G   +  + K   I+ +      ++D+  + G +D A Q+  S
Sbjct: 374 TLTGVLSACSHCGLVDDGLMFFDRMSKVFGIEPNIHHYGCMVDLLGRAGLLDQAYQLIMS 433

Query: 200 YGDKDVSAYTSAIFG 214
              K  S     + G
Sbjct: 434 MVIKPDSTLWRTLLG 448



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 116/232 (50%), Gaps = 4/232 (1%)

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           + +VF+Q+ K S   + V+I  ++ +  P++   L+REM+   + PN      ++ +C +
Sbjct: 121 SSQVFSQIMKPSGSQYNVMIRAYSMSHSPEQGFYLYREMRRRGVPPNPLSSSFVMKSCIR 180

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSA 211
           + +L  G  +++ I +   + D++L   L+D+Y+ C   + A +VF      D  ++   
Sbjct: 181 ISSLMGGLQIHARILRDGHQSDNLLLTTLMDLYSCCDKFEEACKVFDEIPQWDTVSWNVL 240

Query: 212 IFGLAMNGHSIEAFELFENMKSK--GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDV 269
           I     N  + +A  +F+ M+S   G  PD ++ + +L AC++LG +E G    H+  + 
Sbjct: 241 ISCCIHNRRTRDALRMFDIMQSTADGFEPDDVTCLLLLQACANLGALEFG-ERVHNYIEE 299

Query: 270 HGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           HG    L+    ++ +  R G LE+A +    M  + + V W  ++    +H
Sbjct: 300 HGYDGALNLCNSLITMYSRCGRLEKAYSIFKRMDER-NVVSWSAMISGFAMH 350


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 198/504 (39%), Positives = 316/504 (62%), Gaps = 3/504 (0%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DVFV  +L+ FY+ CG + +A+ +F      DVV+WN+MI G    G   + ++L  +M 
Sbjct: 143 DVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQM- 201

Query: 70  QRNDVSWNS--ILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALF 127
           Q   +  NS  I+G L     +  A ++F+ M  R+ VSW  +I G+  +   KEAL +F
Sbjct: 202 QEEGICPNSSTIVGVLPTCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIF 261

Query: 128 REMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC 187
           R MQ   ++P+   ++ +L AC+ L AL +G   + Y+  +    D+++C ALIDMY+KC
Sbjct: 262 RMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKC 321

Query: 188 GSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVL 247
           G I  A +VF+     D+ ++ + I G  ++G  +EA  LF ++ + G+ PD I++I +L
Sbjct: 322 GKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLL 381

Query: 248 SACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPD 307
           S+CSH G V +G  +F +M     I P ++H  CMVD+LGRAGL++EA +FI +MP +PD
Sbjct: 382 SSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPD 441

Query: 308 NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKT 367
             IW  LL ACR+H+N E+G+ +   +        G ++LLSNIY    + ++A  +R T
Sbjct: 442 VRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRIT 501

Query: 368 MRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSV 427
            +   +K+ PGCS IE++G+VH F+ GD+SH +  +I +  EE++ ++K  GY  E   V
Sbjct: 502 QKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSFV 561

Query: 428 MFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKR 487
             D+EEEEKE ++ YHSEKLA+AFG++  K G  I + KN+R+C DCH+A+K ++ + KR
Sbjct: 562 FQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHTAIKFMTLITKR 621

Query: 488 KISIRDRKHYHHFEDGSCSCLEYW 511
           +I++RD   +HHF++G+C+C ++W
Sbjct: 622 EITVRDANRFHHFKNGTCNCGDFW 645



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 138/278 (49%), Gaps = 15/278 (5%)

Query: 48  MINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRF----GSVDDACRVFNQMPKRS 103
           ++   +++  + E  K+     +    + +S+L  L R       V  A R+F+++P  S
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 104 LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYS 163
           ++ W  +I  +A NG    A+ L+  M  L + PN      +L AC+ L A++ G  ++S
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHS 133

Query: 164 YIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIE 223
           + +   ++ D  +C AL+D YAKCG +  A ++F S   +DV A+ + I G ++ G   +
Sbjct: 134 HAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDD 193

Query: 224 AFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMV 283
           A +L   M+ +GI P+S + + VL  C  L +  K       +FDV G++ E+  ++ M+
Sbjct: 194 AVQLIMQMQEEGICPNSSTIVGVLPTCQCLLYARK-------IFDVMGVRNEVS-WSAMI 245

Query: 284 DLLGRAGLLEEAENFIASMPMK---PDNVIWGTLLGAC 318
                +  ++EA +    M +    PD      +L AC
Sbjct: 246 GGYVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPAC 283



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 87/176 (49%), Gaps = 16/176 (9%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++   FA D  + N+LI  YS CG++  AR VF+  D  D+VSWN+MI GY  +G  +E 
Sbjct: 299 LIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEA 358

Query: 62  LKLFDKM----PQRNDVSWNSIL-----GGLVRFGSV--DDACRVFNQMPKRSLVSWVVL 110
           L LF  +     + +D+++  +L      GLV  G +  D   R F+ +P+      +V 
Sbjct: 359 LGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVD 418

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQ 166
           I G A  G   EA    R M     EP+  I  +LLSAC     ++ G  V   IQ
Sbjct: 419 ILGRA--GLIDEAHHFIRNMP---FEPDVRIWSALLSACRIHKNIELGEEVSKKIQ 469


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/502 (39%), Positives = 311/502 (61%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DV   N++I   +  G + +AR +F    + + VSW++M++GYV  G++   ++ F   P
Sbjct: 134 DVASWNTMISALAQVGLMGEARRLFSAMPEKNCVSWSAMVSGYVACGDLDAAVECFYAAP 193

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE 129
            R+ ++W +++ G ++FG V+ A R+F +M  R+LV+W  +I+G+ +NGR ++ L LFR 
Sbjct: 194 MRSVITWTAMITGYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRT 253

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
           M    ++PN+  L S+L  C+ L AL  G  V+  + K  +  D+    +L+ MY+KCG 
Sbjct: 254 MLETGVKPNALSLTSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGD 313

Query: 190 IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
           +  A ++F     KDV  + + I G A +G   +A  LF+ MK +G+ PD I+++AVL A
Sbjct: 314 LKDAWELFIQIPRKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLA 373

Query: 250 CSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNV 309
           C+H G V+ G  YF++M    GI+ + +HYACMVDLLGRAG L EA + I SMP KP   
Sbjct: 374 CNHAGLVDLGVQYFNTMRRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIKSMPFKPHPA 433

Query: 310 IWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMR 369
           I+GTLLGACR+H+N  + +     L+E D      Y+ L+N+Y    + ++   +R++M+
Sbjct: 434 IYGTLLGACRIHKNLNLAEFAAKNLLELDPTIATGYVQLANVYAAQNRWDHVASIRRSMK 493

Query: 370 KRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMF 429
              + + PG S IE++ VVH F + DR H +   I++  +++ KK+K  GY  +   V+ 
Sbjct: 494 DNNVVKIPGYSWIEINSVVHGFRSSDRLHPELASIHEKLKDLEKKMKLAGYVPDLEFVLH 553

Query: 430 DIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKI 489
           D+ EE KE ++ +HSEKLA+AFGL+    G  IR+ KN+R+C DCHSA K +S +  R+I
Sbjct: 554 DVGEELKEQLLLWHSEKLAIAFGLLKVPLGVPIRVFKNLRVCGDCHSATKYISTIEGREI 613

Query: 490 SIRDRKHYHHFEDGSCSCLEYW 511
            +RD   +HHF+DG CSC +YW
Sbjct: 614 IVRDTTRFHHFKDGFCSCRDYW 635



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 142/322 (44%), Gaps = 11/322 (3%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRN-GEILEGLKLFDKM 68
           +V   N LI  Y  CG +  A  VF++      V+WNS++  + +  G      +LF+K+
Sbjct: 40  NVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHFEYARQLFEKI 99

Query: 69  PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFR 128
           PQ N VS+N +L        V DA   F+ MP + + SW  +IS  AQ G   EA  LF 
Sbjct: 100 PQPNTVSYNIMLACHWHHLGVHDARGFFDSMPLKDVASWNTMISALAQVGLMGEARRLFS 159

Query: 129 EMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCG 188
            M     E N     +++S     G LD     +     + +    I   A+I  Y K G
Sbjct: 160 AMP----EKNCVSWSAMVSGYVACGDLDAAVECFYAAPMRSV----ITWTAMITGYMKFG 211

Query: 189 SIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248
            ++LA ++F     + +  + + I G   NG + +   LF  M   G+ P+++S  +VL 
Sbjct: 212 RVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVLL 271

Query: 249 ACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDN 308
            CS+L  ++ G    H +     +  +      +V +  + G L++A      +P K D 
Sbjct: 272 GCSNLSALQLG-KQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRK-DV 329

Query: 309 VIWGTLLGACRVHRNAEMGQRI 330
           V W  ++     H   +   R+
Sbjct: 330 VCWNAMISGYAQHGAGKKALRL 351



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 102/217 (47%), Gaps = 19/217 (8%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V K   + D     SL+  YS CG ++DA  +F +    DVV WN+MI+GY ++G   +
Sbjct: 288 LVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVVCWNAMISGYAQHGAGKK 347

Query: 61  GLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLI 111
            L+LFD+M +     + +++ ++L      G VD   + FN M +   +      +  ++
Sbjct: 348 ALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYFNTMRRDFGIETKPEHYACMV 407

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK 171
               + G+  EA+ L   ++S+  +P+ AI  +LL AC     L+       +  K  ++
Sbjct: 408 DLLGRAGKLSEAVDL---IKSMPFKPHPAIYGTLLGACRIHKNLNLAE----FAAKNLLE 460

Query: 172 LDSILCAA---LIDMYAKCGSIDLAMQVFHSYGDKDV 205
           LD  +      L ++YA     D    +  S  D +V
Sbjct: 461 LDPTIATGYVQLANVYAAQNRWDHVASIRRSMKDNNV 497


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/549 (36%), Positives = 322/549 (58%), Gaps = 40/549 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           V+ SF   V V   L+  Y+ C  +  AR +FD     + VSW++MI GYV +  + E L
Sbjct: 237 VRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEAL 296

Query: 63  KLFDKM--------------------PQRNDVS--------------------WNSILGG 82
           +LFD+M                     +  D+S                     N++L  
Sbjct: 297 ELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSM 356

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G +DDA R F+ M  +  VS+  ++SG  QNG    AL++FR MQ   ++P+   +
Sbjct: 357 YAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTM 416

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           + +L AC+ L AL +G   + Y+  +    D+++C ALIDMY+KCG I  A +VF+    
Sbjct: 417 LGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDR 476

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
            D+ ++ + I G  ++G  +EA  LF ++ + G+ PD I++I +LS+CSH G V +G  +
Sbjct: 477 HDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLW 536

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F +M     I P ++H  CMVD+LGRAGL++EA +FI +MP +PD  IW  LL ACR+H+
Sbjct: 537 FDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHK 596

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           N E+G+ +   +        G ++LLSNIY    + ++A  +R T +   +K+ PGCS I
Sbjct: 597 NIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWI 656

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E++G+VH F+ GD+SH +  +I +  EE++ ++K  GY  E   V  D+EEEEKE ++ Y
Sbjct: 657 EINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEEEKEQILLY 716

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSEKLA+AFG++  K G  I + KN+R+C DCH+A+K ++ + KR+I++RD   +HHF++
Sbjct: 717 HSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHAAIKFMTVITKREITVRDANRFHHFKN 776

Query: 503 GSCSCLEYW 511
           G+C+C ++W
Sbjct: 777 GTCNCGDFW 785



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 169/380 (44%), Gaps = 42/380 (11%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +KN+   D  V + L + Y  C +V  AR +FDE  +  V+ WN +I  Y  NG     +
Sbjct: 35  LKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAI 94

Query: 63  KLFDKM----PQRNDVSWNSIL-------------------------------GGLVRF- 86
            L+  M     + N  ++  +L                                 LV F 
Sbjct: 95  DLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFY 154

Query: 87  ---GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
              G + +A R+F+ M  R +V+W  +I+G +  G   +A+ L  +MQ   + PNS+ +V
Sbjct: 155 AKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIV 214

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
            +L    +  AL +G  ++ Y  ++      ++   L+DMYAKC  +  A ++F   G +
Sbjct: 215 GVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVR 274

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSK-GISPDSISYIAVLSACSHLGWVEKGFYY 262
           +  ++++ I G   +    EA ELF+ M  K  + P  ++  +VL AC+ L  + +G   
Sbjct: 275 NEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRG-RK 333

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
            H      G   ++     ++ +  + G++++A  F   M  K D+V +  ++  C  + 
Sbjct: 334 LHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPK-DSVSFSAIVSGCVQNG 392

Query: 323 NAEMGQRIGNMLIESDQNHD 342
           NA +   I  M+  S  + D
Sbjct: 393 NAAVALSIFRMMQLSGIDPD 412



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 154/342 (45%), Gaps = 43/342 (12%)

Query: 48  MINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRF----GSVDDACRVFNQMPKRS 103
           ++   +++  + E  K+     +    + +S+L  L R       V  A R+F+++P  S
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 104 LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYS 163
           ++ W  +I  +A NG    A+ L+  M  L + PN      +L AC+ L A++ G  ++S
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHS 133

Query: 164 YIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIE 223
           + +   ++ D  +C AL+D YAKCG +  A ++F S   +DV A+ + I G ++ G   +
Sbjct: 134 HAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDD 193

Query: 224 AFELFENMKSKGISPDSISYIAVLSACS-----------HLGWVEKGF------------ 260
           A +L   M+ +GI P+S + + VL               H   V + F            
Sbjct: 194 AVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLD 253

Query: 261 --------YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMK----PDN 308
                    Y   +FDV G++ E+  ++ M+     +  ++EA      M +K    P  
Sbjct: 254 MYAKCQCLLYARKIFDVMGVRNEVS-WSAMIGGYVXSDCMKEALELFDQMILKDAMDPTP 312

Query: 309 VIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSN 350
           V  G++L AC    +   G+++   +I+     D   ILL N
Sbjct: 313 VTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLD---ILLGN 351



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 125/288 (43%), Gaps = 43/288 (14%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K     D+ + N+L+  Y+ CG + DA   FD  +  D VS++++++G V+NG     
Sbjct: 338 IIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVA 397

Query: 62  LKLFDKMPQRN-DVSWNSILGGLV------------------------------------ 84
           L +F  M     D    ++LG L                                     
Sbjct: 398 LSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDM 457

Query: 85  --RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G +  A  VFN+M +  +VSW  +I G+  +G   EAL LF ++ +L L+P+    
Sbjct: 458 YSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITF 517

Query: 143 VSLLSACAQLGALDYGN-WVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           + LLS+C+  G +  G  W  +  +   I      C  ++D+  + G ID A     +  
Sbjct: 518 ICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMP 577

Query: 202 -DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248
            + DV  +++ +    ++ +     E+ + ++S G  P+S     +LS
Sbjct: 578 FEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLG--PESTGNFVLLS 623


>gi|356513527|ref|XP_003525465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Glycine max]
          Length = 579

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 192/423 (45%), Positives = 276/423 (65%), Gaps = 2/423 (0%)

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQ--SLDLEPNSAILVSLLSA 148
           DAC+VF++MP R  V+W V+IS   +N R ++AL+LF  MQ  S   EP+    + LL A
Sbjct: 157 DACKVFDEMPHRDTVAWNVMISCCIRNNRTRDALSLFDVMQGSSYKCEPDDVTCLLLLQA 216

Query: 149 CAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAY 208
           CA L AL++G  ++ YI ++  +    LC +LI MY++CG +D A +VF   G+K+V ++
Sbjct: 217 CAHLNALEFGERIHGYIMERGYRDALNLCNSLISMYSRCGCLDKAYEVFKGMGNKNVVSW 276

Query: 209 TSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD 268
           ++ I GLAMNG+  EA E FE M   G+ PD  ++  VLSACS+ G V++G  +FH M  
Sbjct: 277 SAMISGLAMNGYGREAIEAFEEMLRIGVLPDDQTFTGVLSACSYSGMVDEGMSFFHRMSR 336

Query: 269 VHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQ 328
             G+ P + HY CMVDLLGRAGLL++A   I SM +KPD+ +W TLLGACR+H +  +G+
Sbjct: 337 EFGVTPNVHHYGCMVDLLGRAGLLDKAYQLIMSMVVKPDSTMWRTLLGACRIHGHVTLGE 396

Query: 329 RIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVV 388
           R+   LIE      G Y+LL NIY      E   EVRK M+ + I+  PGCS IEL G V
Sbjct: 397 RVIGHLIELKAQEAGDYVLLLNIYSSAGHWEKVAEVRKLMKNKSIQTTPGCSTIELKGAV 456

Query: 389 HEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLA 448
           HEF+  D SH + +EIY+  +EI  +++  GY VE  S +  ++++EK  V+ +HSEKLA
Sbjct: 457 HEFVVDDVSHSRNREIYETLDEINHQLRIAGYVVELSSELHKMDDKEKGYVLSHHSEKLA 516

Query: 449 LAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCL 508
           +AFG++ T PG+++R+  N+R+C DCH+ +KL S V+ R + +RD   +HHF  G CSC 
Sbjct: 517 VAFGVLATPPGTILRVASNLRVCVDCHNFLKLFSGVYNRDVVLRDHNRFHHFRGGRCSCS 576

Query: 509 EYW 511
           +YW
Sbjct: 577 DYW 579



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 116/262 (44%), Gaps = 43/262 (16%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           + K+   +D  +  +++  YS+C R  DA  VFDE    D V+WN MI+  +RN    + 
Sbjct: 130 IFKDGHQWDTLLLTAVMDLYSLCQRGGDACKVFDEMPHRDTVAWNVMISCCIRNNRTRDA 189

Query: 62  LKLFDKMP------QRNDVSW-----------------------------------NSIL 80
           L LFD M       + +DV+                                    NS++
Sbjct: 190 LSLFDVMQGSSYKCEPDDVTCLLLLQACAHLNALEFGERIHGYIMERGYRDALNLCNSLI 249

Query: 81  GGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
               R G +D A  VF  M  +++VSW  +ISG A NG  +EA+  F EM  + + P+  
Sbjct: 250 SMYSRCGCLDKAYEVFKGMGNKNVVSWSAMISGLAMNGYGREAIEAFEEMLRIGVLPDDQ 309

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKK-CIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
               +LSAC+  G +D G   +  + ++  +  +      ++D+  + G +D A Q+  S
Sbjct: 310 TFTGVLSACSYSGMVDEGMSFFHRMSREFGVTPNVHHYGCMVDLLGRAGLLDKAYQLIMS 369

Query: 200 YGDK-DVSAYTSAIFGLAMNGH 220
              K D + + + +    ++GH
Sbjct: 370 MVVKPDSTMWRTLLGACRIHGH 391



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 104/234 (44%), Gaps = 7/234 (2%)

Query: 87  GSVDDAC---RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
           G + DA    R F Q+    +  +  +I   + +  P++ L L+R+M+   +  +     
Sbjct: 49  GPLQDASYSQRFFGQLSHPLVSHYNTMIRACSMSDSPQKGLLLYRDMRRRGIAADPLSSS 108

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
             + +C +   L  G  V+  I K   + D++L  A++D+Y+ C     A +VF     +
Sbjct: 109 FAVKSCIRFLYLPGGVQVHCNIFKDGHQWDTLLLTAVMDLYSLCQRGGDACKVFDEMPHR 168

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMK--SKGISPDSISYIAVLSACSHLGWVEKGFY 261
           D  A+   I     N  + +A  LF+ M+  S    PD ++ + +L AC+HL  +E G  
Sbjct: 169 DTVAWNVMISCCIRNNRTRDALSLFDVMQGSSYKCEPDDVTCLLLLQACAHLNALEFG-E 227

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
             H      G +  L+    ++ +  R G L++A      M  K + V W  ++
Sbjct: 228 RIHGYIMERGYRDALNLCNSLISMYSRCGCLDKAYEVFKGMGNK-NVVSWSAMI 280


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 219/544 (40%), Positives = 308/544 (56%), Gaps = 40/544 (7%)

Query: 7   FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFD 66
           FA D F+ NSLI  Y  C  V DAR VFD+    D+VSW S+I GY +N   +E + L  
Sbjct: 82  FAGDAFLDNSLIHMYCKCRSVLDARNVFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLP 141

Query: 67  KMPQ----RNDVSWNSILGG-----------------------------------LVRFG 87
            M +     N  ++ S+L                                       R G
Sbjct: 142 GMLKGRFKPNGFTFASLLKAAGAYADSGTGRQIHALAVKCGWHEDVYVGSALLDMYARCG 201

Query: 88  SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLS 147
            +D A  VF+++  ++ VSW  LISGFA+ G  + AL  F EM     E       S+ S
Sbjct: 202 KMDMATAVFDKLDSKNGVSWNALISGFARKGDGESALMTFAEMLRNGFEATHFTYSSVFS 261

Query: 148 ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSA 207
           + A+LGAL+ G WV++++ K   KL + +   L+DMYAK GS+  A +VF    +KD+  
Sbjct: 262 SIARLGALEQGKWVHAHVIKSRQKLTAFVGNTLLDMYAKSGSMIDARKVFDRVDNKDLVT 321

Query: 208 YTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMF 267
           + S +   A  G   EA   FE M+  G+  + I+++ +L+ACSH G V++G  YF  M 
Sbjct: 322 WNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQITFLCILTACSHGGLVKEGKRYF-EMM 380

Query: 268 DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMG 327
             + ++PE+DHY  +V LLGRAGLL  A  FI  MPM+P   +WG LL ACR+H+NA++G
Sbjct: 381 KEYDLEPEIDHYVTVVALLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVG 440

Query: 328 QRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGV 387
           Q   + + E D +  G  +LL NIY  T + + A  VR  M+   +K+ P CS +E++  
Sbjct: 441 QFAADHVFELDPDDSGPPVLLYNIYASTGQWDAAARVRMMMKTTGVKKEPACSWVEMENS 500

Query: 388 VHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKL 447
           VH F+A D +H + +EIY+ W EI KKI+  GY  +   V+  ++++EKE  + YHSEKL
Sbjct: 501 VHMFVANDDTHPQAEEIYKMWGEISKKIRKEGYVPDMDYVLLHVDDQEKEANLQYHSEKL 560

Query: 448 ALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSC 507
           ALAF LI    G+ IRI+KNIRIC DCHSA K +SKVF R+I +RD   +HHF  GSCSC
Sbjct: 561 ALAFALIEMPAGATIRIMKNIRICGDCHSAFKYISKVFGREIVVRDTNRFHHFSSGSCSC 620

Query: 508 LEYW 511
            +YW
Sbjct: 621 GDYW 624



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 111/233 (47%), Gaps = 39/233 (16%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + VK  +  DV+V ++L+  Y+ CG++  A  VFD+ D  + VSWN++I+G+ R G+   
Sbjct: 177 LAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGES 236

Query: 61  GLKLFDKMPQR----NDVSWNSILGGLVRFGSVD-------------------------- 90
            L  F +M +        +++S+   + R G+++                          
Sbjct: 237 ALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTAFVGNTLLD 296

Query: 91  ---------DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
                    DA +VF+++  + LV+W  +++ FAQ G  KEA++ F EM+   +  N   
Sbjct: 297 MYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQIT 356

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
            + +L+AC+  G +  G   +  +++  ++ +      ++ +  + G ++ A+
Sbjct: 357 FLCILTACSHGGLVKEGKRYFEMMKEYDLEPEIDHYVTVVALLGRAGLLNYAL 409



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 88/194 (45%), Gaps = 7/194 (3%)

Query: 126 LFREMQSLD---LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182
           + R++  LD   L P   +  S ++ACAQ   L+    +++++       D+ L  +LI 
Sbjct: 35  VLRDLDLLDAGELAPTPRVYRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIH 94

Query: 183 MYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSIS 242
           MY KC S+  A  VF     KD+ ++TS I G A N   +EA  L   M      P+  +
Sbjct: 95  MYCKCRSVLDARNVFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFT 154

Query: 243 YIAVLSACSHLGWVEKGF-YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
           + ++L A     + + G     H++    G   ++   + ++D+  R G ++ A      
Sbjct: 155 FASLLKAAG--AYADSGTGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDK 212

Query: 302 MPMKPDNVIWGTLL 315
           +  K + V W  L+
Sbjct: 213 LDSK-NGVSWNALI 225


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/549 (37%), Positives = 318/549 (57%), Gaps = 39/549 (7%)

Query: 2    VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
            + ++    DV + N+LI  Y  CG ++DAR VF      DV+SW +MI G    GE ++ 
Sbjct: 558  ITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKA 617

Query: 62   LKLFDKM------PQRNDVS---------------------------------WNSILGG 82
            ++LF +M      P ++  S                                  N+++  
Sbjct: 618  IELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISA 677

Query: 83   LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
              + GS+ DA  VF++MP R +VSW  +I+G+AQNG  + A+    +MQ  D+ PN    
Sbjct: 678  YSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSF 737

Query: 143  VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            VSLL+AC+   AL+ G  V++ I K+ ++ D  + AALI MYAKCGS   A +VF +  +
Sbjct: 738  VSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIE 797

Query: 203  KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
            K+V  + + I   A +G + +A   F  M+ +GI PD  ++ ++LSAC+H G V +G+  
Sbjct: 798  KNVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQI 857

Query: 263  FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
            F SM   +G+ P ++HY C+V LLGRA   +EAE  I  MP  PD  +W TLLGACR+H 
Sbjct: 858  FSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHG 917

Query: 323  NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
            N  + +   N  ++ +  +   YILLSN+Y    + ++  ++R+ M  R I++ PG S I
Sbjct: 918  NIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWI 977

Query: 383  ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
            E+D ++HEF+A DRSH +T EIY   + +  +++  GY  +T+ V+ D+ +  +ET +  
Sbjct: 978  EVDNIIHEFIAADRSHPETAEIYAELKRLSVEMEEAGYFPDTQHVLHDLGKAHQETSLCT 1037

Query: 443  HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
            HSE+LA+A+GLI T PG+ IRI KN+RIC DCH+A K +SK+  R+I  RD   +H F++
Sbjct: 1038 HSERLAIAYGLIKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHSFKN 1097

Query: 503  GSCSCLEYW 511
            G CSC +YW
Sbjct: 1098 GKCSCEDYW 1106



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 98/355 (27%), Positives = 172/355 (48%), Gaps = 41/355 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           + ++  + DV + N+LI  Y+ CG +  AR +F      D++SWN++I GY R  +  E 
Sbjct: 356 ISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEA 415

Query: 62  LKLFDKM------PQR---------------------------------NDVSWNSILGG 82
           ++L+ +M      P R                                 N    N+++  
Sbjct: 416 MRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNM 475

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             R GS+ +A  VF     R ++SW  +I+G AQ+G  + A  LF+EMQ+ +LEP++   
Sbjct: 476 YRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITF 535

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S+LS C    AL+ G  ++  I +  ++LD  L  ALI+MY +CGS+  A  VFHS   
Sbjct: 536 ASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQH 595

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           +DV ++T+ I G A  G  ++A ELF  M+++G  P   ++ ++L  C+    +++G   
Sbjct: 596 RDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKV 655

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
              + +  G + +      ++    ++G + +A      MP + D V W  ++  
Sbjct: 656 IAYILN-SGYELDTGVGNALISAYSKSGSMTDAREVFDKMPSR-DIVSWNKIIAG 708



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 98/347 (28%), Positives = 159/347 (45%), Gaps = 41/347 (11%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D+F+ N LI  Y  C  V DA  VF E    DV+SWNS+I+ Y + G   +  +LF++M 
Sbjct: 61  DIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQ 120

Query: 70  ---------------------------------------QRNDVSWNSILGGLVRFGSVD 90
                                                  QR+    NS+L    + G + 
Sbjct: 121 NAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLP 180

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
            A +VF  +  R +VS+  ++  +AQ    KE L LF +M S  + P+    ++LL A  
Sbjct: 181 RARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFT 240

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
               LD G  ++    ++ +  D  +  AL+ M  +CG +D A Q F    D+DV  Y +
Sbjct: 241 TPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNA 300

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I  LA +GH++EAFE +  M+S G++ +  +Y+++L+ACS    +E G    HS     
Sbjct: 301 LIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAG-KLIHSHISED 359

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
           G   ++     ++ +  R G L +A     +MP K D + W  ++  
Sbjct: 360 GHSSDVQIGNALISMYARCGDLPKARELFYTMP-KRDLISWNAIIAG 405



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 99/357 (27%), Positives = 173/357 (48%), Gaps = 41/357 (11%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + V+     D+ V  +L+     CG V  A+  F  + D DVV +N++I    ++G  +E
Sbjct: 254 LTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVE 313

Query: 61  GLKLFDKMPQR----NDVSWNSIL-----------GGLV--------------------- 84
             + + +M       N  ++ SIL           G L+                     
Sbjct: 314 AFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALIS 373

Query: 85  ---RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              R G +  A  +F  MPKR L+SW  +I+G+A+     EA+ L+++MQS  ++P    
Sbjct: 374 MYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVT 433

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
            + LLSACA   A   G  ++  I +  IK +  L  AL++MY +CGS+  A  VF    
Sbjct: 434 FLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQ 493

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
            +DV ++ S I G A +G    A++LF+ M+++ + PD+I++ +VLS C +   +E G  
Sbjct: 494 ARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELG-K 552

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
             H      G++ +++    ++++  R G L++A N   S+  + D + W  ++G C
Sbjct: 553 QIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHR-DVMSWTAMIGGC 608



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/359 (25%), Positives = 169/359 (47%), Gaps = 41/359 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++++    +  + N+L+  Y  CG + +A+ VF+ +   DV+SWNSMI G+ ++G     
Sbjct: 457 ILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETA 516

Query: 62  LKLFDKMP----QRNDVSWNSILGG----------------------------------- 82
            KLF +M     + +++++ S+L G                                   
Sbjct: 517 YKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINM 576

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
            +R GS+ DA  VF+ +  R ++SW  +I G A  G   +A+ LF +MQ+    P  +  
Sbjct: 577 YIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTF 636

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S+L  C     LD G  V +YI     +LD+ +  ALI  Y+K GS+  A +VF     
Sbjct: 637 SSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMPS 696

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           +D+ ++   I G A NG    A E    M+ + + P+  S++++L+ACS    +E+G   
Sbjct: 697 RDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEG-KR 755

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            H+      ++ ++   A ++ +  + G   EA+    ++ ++ + V W  ++ A   H
Sbjct: 756 VHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNI-IEKNVVTWNAMINAYAQH 813



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 109/448 (24%), Positives = 195/448 (43%), Gaps = 79/448 (17%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K  +  D  V+NSL+  Y  CG +  AR VF      DVVS+N+M+  Y +   + E 
Sbjct: 154 IIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKEC 213

Query: 62  LKLFDKMPQR----NDVSWNSILGGL---------------------------------- 83
           L LF +M       + V++ ++L                                     
Sbjct: 214 LGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTM 273

Query: 84  -VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
            VR G VD A + F     R +V +  LI+  AQ+G   EA   +  M+S  +  N    
Sbjct: 274 CVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTY 333

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           +S+L+AC+   AL+ G  ++S+I +     D  +  ALI MYA+CG +  A ++F++   
Sbjct: 334 LSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPK 393

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           +D+ ++ + I G A      EA  L++ M+S+G+ P  ++++ +LSAC++      G   
Sbjct: 394 RDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADG-KM 452

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENF------------------------ 298
            H      GIK        ++++  R G L EA+N                         
Sbjct: 453 IHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGS 512

Query: 299 ----------IASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD---GRY 345
                     + +  ++PDN+ + ++L  C+     E+G++I   + ES    D   G  
Sbjct: 513 YETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNA 572

Query: 346 ILLSNIYVETLKGENAEEVRKTMRKRKI 373
           ++  N+Y+     ++A  V  +++ R +
Sbjct: 573 LI--NMYIRCGSLQDARNVFHSLQHRDV 598



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/245 (31%), Positives = 126/245 (51%), Gaps = 2/245 (0%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136
           N ++   V+  SV DA +VF +MP+R ++SW  LIS +AQ G  K+A  LF EMQ+    
Sbjct: 66  NLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFI 125

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
           PN    +S+L+AC     L+ G  ++S I K   + D  +  +L+ MY KCG +  A QV
Sbjct: 126 PNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQV 185

Query: 197 FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWV 256
           F     +DV +Y + +   A   +  E   LF  M S+GISPD ++YI +L A +    +
Sbjct: 186 FAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSML 245

Query: 257 EKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLG 316
           ++G    H +    G+  ++     +V +  R G ++ A+        + D V++  L+ 
Sbjct: 246 DEG-KRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADR-DVVVYNALIA 303

Query: 317 ACRVH 321
           A   H
Sbjct: 304 ALAQH 308



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 2/186 (1%)

Query: 131 QSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSI 190
           Q    E   A  V+LL  C +   L     +++ + +  +  D  L   LI+MY KC S+
Sbjct: 19  QPRPTETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSV 78

Query: 191 DLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250
             A QVF     +DV ++ S I   A  G   +AF+LFE M++ G  P+ I+YI++L+AC
Sbjct: 79  LDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTAC 138

Query: 251 SHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVI 310
                +E G    HS     G + +      ++ + G+ G L  A    A +  + D V 
Sbjct: 139 YSPAELENG-KKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPR-DVVS 196

Query: 311 WGTLLG 316
           + T+LG
Sbjct: 197 YNTMLG 202


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/466 (41%), Positives = 291/466 (62%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N++I  Y +N ++ E  K+F  MP RN ++WN+IL G V  G +++A   F +MP ++L+
Sbjct: 332 NALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLL 391

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           +  V+ISG AQNG   E L LF++M+    EP        L+AC+ LGAL+ G  +++ +
Sbjct: 392 TLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQL 451

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
                +    +  A+I MYAKCG ++ A  VF +    D+ ++ S I  L  +GH ++A 
Sbjct: 452 VHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAI 511

Query: 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL 285
           ELF+ M  +G+ PD I+++ VL+ACSH G VEKG +YF+SM + +GI P  DHYA MVDL
Sbjct: 512 ELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDL 571

Query: 286 LGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRY 345
             RAG+   A   I SMP KP   +W  LL  CR+H N ++G      L +    +DG Y
Sbjct: 572 FCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTY 631

Query: 346 ILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIY 405
           +LLSNIY +  +     +VRK MR + +++ P CS IE++  VH F+  D  H +   +Y
Sbjct: 632 VLLSNIYADVGRWNEVAKVRKLMRDQAVRKEPACSWIEVENKVHVFMVDDDVHPEVLSVY 691

Query: 406 QFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIV 465
           ++ E++  ++K  GY  +T+ V+ D+E E+KE  +  HSEKLA+ FG++   PG+ +R+ 
Sbjct: 692 RYLEQLGLEMKKLGYIPDTKFVLHDMEYEQKEHALSTHSEKLAVGFGIMKLPPGATVRVF 751

Query: 466 KNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           KNIRIC DCH+A K +SKV +R+I +RDRK +HHF++G CSC +YW
Sbjct: 752 KNIRICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDCSCRDYW 797



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 153/319 (47%), Gaps = 45/319 (14%)

Query: 46  NSMINGYVRNGE--------ILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFN 97
           N++++ YV+           ++   KLFD+MP+R++++W +++ G VR   ++ A  VF 
Sbjct: 188 NALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFE 247

Query: 98  QMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDY 157
            M +    +W  +ISG+   G  +EAL L R+M+ L ++ +     +++SACA +G+   
Sbjct: 248 AMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQM 307

Query: 158 GNWVYSYIQKKCIKLDSILCA----ALIDMYAKCGSIDLAMQVFHSYGDKDV-------S 206
           G  V++YI K  +  +   C     ALI +Y K   +D A ++F++   +++       S
Sbjct: 308 GKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILS 367

Query: 207 AYTSA------------------------IFGLAMNGHSIEAFELFENMKSKGISPDSIS 242
            Y +A                        I GLA NG   E  +LF+ M+  G  P   +
Sbjct: 368 GYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFA 427

Query: 243 YIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM 302
           +   L+ACS LG +E G    H+     G +  L     M+ +  + G++E AE+   +M
Sbjct: 428 FAGALTACSVLGALENG-RQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTM 486

Query: 303 PMKPDNVIWGTLLGACRVH 321
           P   D V W +++ A   H
Sbjct: 487 P-SVDLVSWNSMIAALGQH 504



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/319 (21%), Positives = 136/319 (42%), Gaps = 53/319 (16%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMP--KRS 103
           N ++  Y ++  ++   +LF+++P  + ++  +++      G+++    +FN  P   R 
Sbjct: 52  NRLLEMYCKSSNLVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRD 111

Query: 104 LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA----------CAQL- 152
            V +  +I+G+A NG    AL LFR M+  D  P+     S+LSA          C Q+ 
Sbjct: 112 SVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMH 171

Query: 153 -GALDYG---------NWVYSYIQKKCIKL--------------------DSILCAALID 182
              +  G         N + S   K+  +L                    D +    +I 
Sbjct: 172 CAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMIT 231

Query: 183 MYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSIS 242
            Y +   ++ A +VF +  +   +A+ + I G    G   EA  L   M+  GI  D I+
Sbjct: 232 GYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDIT 291

Query: 243 YIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYAC------MVDLLGRAGLLEEAE 296
           Y  ++SAC+++G  + G    H+    + + P  +H  C      ++ L  +   ++EA 
Sbjct: 292 YTTIISACANVGSFQMG-KQVHAYILKNELNP--NHSFCLSVSNALITLYCKNNKVDEAR 348

Query: 297 NFIASMPMKPDNVIWGTLL 315
               +MP++ + + W  +L
Sbjct: 349 KIFYAMPVR-NIITWNAIL 366



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 119/269 (44%), Gaps = 49/269 (18%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           ++   N+++  Y   GR+ +A+  F+E    ++++   MI+G  +NG   EGLKLF +M 
Sbjct: 358 NIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQM- 416

Query: 70  QRND------------VSWNSILGGL-----------------------------VRFGS 88
            R D            ++  S+LG L                              + G 
Sbjct: 417 -RLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGV 475

Query: 89  VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148
           V+ A  VF  MP   LVSW  +I+   Q+G   +A+ LF +M    + P+    +++L+A
Sbjct: 476 VEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTA 535

Query: 149 CAQLGALDYG-NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSA 207
           C+  G ++ G ++  S ++   I       A ++D++ + G    A  V  S   K  + 
Sbjct: 536 CSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAP 595

Query: 208 YTSAIF-GLAMNGH---SIEAFE-LFENM 231
              A+  G  ++G+    IEA E LF+ M
Sbjct: 596 VWEALLAGCRIHGNMDLGIEAAEQLFKLM 624


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 198/498 (39%), Positives = 308/498 (61%), Gaps = 12/498 (2%)

Query: 26  RVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ---RNDVSW------ 76
           RV  AR +FDE  D DV+SWNSMI+GYV NG   +GL LF++M       D++       
Sbjct: 200 RVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVEL 259

Query: 77  ---NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL 133
              N +L    + G+++ A +VF  M +RS+VSW  +I+G+A+ G    ++ LF EM+  
Sbjct: 260 TLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKE 319

Query: 134 DLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLA 193
           DL PNS  +  +L ACA L AL+ G  ++ +I +    LD  +  AL+DMY KCG++ LA
Sbjct: 320 DLFPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLA 379

Query: 194 MQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL 253
             +F    +KD+ ++T  I G  M+G+  EA   F  M++ GI PD +S+I++L ACSH 
Sbjct: 380 RLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHS 439

Query: 254 GWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGT 313
           G +++G+ +F+ M +   I+P+ +HYAC+VDLL RAG L +A  FI  MP++PD  IWG 
Sbjct: 440 GLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGA 499

Query: 314 LLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKI 373
           LL  CR++ + ++ +++   + E +  + G Y+LL+NIY E  K E  +++R+ + +R +
Sbjct: 500 LLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGL 559

Query: 374 KRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEE 433
           ++ PGCS IE+ G VH F+ GD SH    +I    ++   ++K  G+  + R  +   ++
Sbjct: 560 RKNPGCSWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPKMRYALIKADD 619

Query: 434 EEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRD 493
            EKE  +  HSEK+A+AFG++   PG  +R+ KN+R+C DCH   K +SK+ KR I +RD
Sbjct: 620 TEKEMALCGHSEKIAMAFGILSLPPGKTVRVTKNLRVCGDCHEMAKFMSKMVKRDIILRD 679

Query: 494 RKHYHHFEDGSCSCLEYW 511
              +HHF+DGSCSC  +W
Sbjct: 680 SNRFHHFKDGSCSCRGHW 697



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 79/157 (50%), Gaps = 12/157 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++N F+ D  V N+L+  Y  CG +  AR +FD   + D+VSW  MI GY  +G   E 
Sbjct: 351 ILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEA 410

Query: 62  LKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLIS 112
           +  F++M     + ++VS+ SIL      G +D+    FN M     +      +  ++ 
Sbjct: 411 IAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVD 470

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
             A+ G   +A   ++ ++ + +EP++ I  +LL  C
Sbjct: 471 LLARAGNLSKA---YKFIKMMPIEPDATIWGALLCGC 504



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 96/221 (43%), Gaps = 25/221 (11%)

Query: 104 LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYS 163
           +  + + I  F + G  + A+ L  +    DLE  +    S+L  CA L ++  G  ++S
Sbjct: 68  ITDYNIEICRFCELGNLRRAMELINQSPKPDLELRT--YCSVLQLCADLKSIQDGRRIHS 125

Query: 164 YIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIE 223
            IQ   +++D +L + L+ MY  CG +    ++F    ++ V  +   + G A  G+  E
Sbjct: 126 IIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRE 185

Query: 224 AFELFENMKSKGI--------------SPDSISYIAVLSACSHLGWVEKGFYYFHSMFDV 269
           +  LF+ M+  GI                D IS+ +++S     G  EKG   F  M  +
Sbjct: 186 SLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQML-L 244

Query: 270 HGIKP--------ELDHYACMVDLLGRAGLLEEAENFIASM 302
            GI          EL    C++D+  ++G L  A     +M
Sbjct: 245 LGINTDLATMVSVELTLNNCLLDMYSKSGNLNSAIQVFETM 285


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 188/466 (40%), Positives = 291/466 (62%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N+++  Y ++G+I    K+FD M  ++ VSWN+IL G +  G +D+A R+F +MP +S +
Sbjct: 339 NALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYKSEL 398

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           SW+V++SG+   G  ++AL LF +M+S D++P        ++AC +LGAL +G  +++++
Sbjct: 399 SWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQLHAHL 458

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
            +   +  +    AL+ MYA+CG++  A  VF    + D  ++ + I  L  +GH  EA 
Sbjct: 459 VQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISALGQHGHGREAL 518

Query: 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL 285
           ELF+ M ++GI PD IS++ +L+AC+H G V+ GF YF SM    GI P  DHYA ++DL
Sbjct: 519 ELFDQMVAQGIYPDRISFLTILTACNHAGLVDDGFQYFESMERDFGISPGEDHYARLIDL 578

Query: 286 LGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRY 345
           LGRAG + EA + I +MP +P   IW  +L  CR++ + E+G    + L +    HDG Y
Sbjct: 579 LGRAGRIGEARDLIKTMPFEPTPAIWEAILSGCRINGDMELGAYAADQLFKMVPEHDGTY 638

Query: 346 ILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIY 405
           ILLSN Y    +  +A  VRK MR R +K+ PGCS IE+   VH FL GD  H    E+Y
Sbjct: 639 ILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGNKVHVFLVGDTKHPDAHEVY 698

Query: 406 QFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIV 465
           +F E +  K++  GY  +T+  + D+   EKE V+  HSE+LA++FGL+    G+ + ++
Sbjct: 699 RFLEMVGAKMRKLGYVPDTKFALQDMAPHEKEYVLFAHSERLAVSFGLLKLPAGATVTVL 758

Query: 466 KNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           KN++IC DCH+AM  +S+   R+I +RD + +HHF+DG CSC  YW
Sbjct: 759 KNLKICGDCHTAMMFMSRAVGREIVVRDVRRFHHFKDGECSCGNYW 804



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 143/318 (44%), Gaps = 48/318 (15%)

Query: 46  NSMINGYVR---NGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKR 102
           N++I  Y++    G   +  K+ D+MP++++++W +I+ G VR G V  A   F ++   
Sbjct: 200 NALIALYMKCDAPGVTRDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGE 259

Query: 103 SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVY 162
             V W  +ISG+ Q+G   EA  LFR M S  + P+     SLLSACA  G   +G  V+
Sbjct: 260 FDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVH 319

Query: 163 S--------YIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS---- 210
                    ++ +  + +++    AL+ +Y+K G I +A ++F S   KDV ++ +    
Sbjct: 320 GQFIRLQPDFVPEAALPVNN----ALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSG 375

Query: 211 ---------------------------AIFGLAMNGHSIEAFELFENMKSKGISPDSISY 243
                                       + G    G + +A +LF  M+S+ + P   +Y
Sbjct: 376 YIESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTY 435

Query: 244 IAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP 303
              ++AC  LG ++ G    H+     G +        ++ +  R G +++A      MP
Sbjct: 436 AGAVAACGELGALKHG-KQLHAHLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMP 494

Query: 304 MKPDNVIWGTLLGACRVH 321
              D+V W  ++ A   H
Sbjct: 495 -NVDSVSWNAMISALGQH 511



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 111/279 (39%), Gaps = 72/279 (25%)

Query: 13  VKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNS------------------------- 47
           V N+L+  YS  G++  A  +FD     DVVSWN+                         
Sbjct: 337 VNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYKS 396

Query: 48  ------MINGYVRNGEILEGLKLFDKM------P-------------------------- 69
                 M++GYV  G   + LKLF++M      P                          
Sbjct: 397 ELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQLHA 456

Query: 70  -------QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKE 122
                  + ++ + N++L    R G+V DA  VF  MP    VSW  +IS   Q+G  +E
Sbjct: 457 HLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISALGQHGHGRE 516

Query: 123 ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKK-CIKLDSILCAALI 181
           AL LF +M +  + P+    +++L+AC   G +D G   +  +++   I       A LI
Sbjct: 517 ALELFDQMVAQGIYPDRISFLTILTACNHAGLVDDGFQYFESMERDFGISPGEDHYARLI 576

Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIF-GLAMNG 219
           D+  + G I  A  +  +   +   A   AI  G  +NG
Sbjct: 577 DLLGRAGRIGEARDLIKTMPFEPTPAIWEAILSGCRING 615


>gi|326497745|dbj|BAK05962.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 742

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/508 (39%), Positives = 320/508 (62%), Gaps = 16/508 (3%)

Query: 16  SLIQFYSVCGRVRDARW-------VFDE----SDDLDVVSWNSMINGYVRNGEILEGLKL 64
           ++I   S CG+++D  +       V D+    SD L V    ++I+ Y + G+     ++
Sbjct: 239 TVIGMLSACGQLKDLNFGCSLHMLVGDKRMLMSDKLVV----ALIDMYAKCGDTGRAREV 294

Query: 65  FDKMPQ-RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEA 123
           FD + + R    WN+++ G  + G VD A  +F+QM    ++++  LI+G+   GR +EA
Sbjct: 295 FDALGRGRGPQPWNAMIDGYCKVGHVDIARSLFDQMEDHDVITFNSLITGYIHGGRLREA 354

Query: 124 LALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDM 183
           L LF +M+   L  ++  +V LL+A A LGAL  G  +++ I+++ ++ D  L  AL+DM
Sbjct: 355 LLLFTKMRRHGLGADNFTMVGLLTASASLGALPQGRALHACIEQRLVERDVYLGTALLDM 414

Query: 184 YAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISY 243
           Y KCG ++ AM  F     +DV  +++ I GLA NG    A E F  MK  G   +S++Y
Sbjct: 415 YMKCGRVEEAMVAFKQMSVRDVHTWSAMIGGLAFNGMGKAALEHFFWMKCDGFHANSVTY 474

Query: 244 IAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP 303
           IAVL+ACSH   +++G  YF  M  +H I+P+++HY CM+DLLGR+GLL+EA + + +MP
Sbjct: 475 IAVLTACSHSCLLDEGRLYFDEMRLLHNIRPQIEHYGCMIDLLGRSGLLDEAMDLVQTMP 534

Query: 304 MKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEE 363
           M+P+ VIW ++L ACRVH+N ++ Q   + L++ +   D  Y+ + NIY+++ + E+A +
Sbjct: 535 MQPNAVIWASILSACRVHKNVDLAQNAAHHLLKLEPAEDAVYVQMYNIYIDSRQWEDASK 594

Query: 364 VRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVE 423
           +R+ M KR +K+  G S I + G VH+F+ GDRSH +  EI    EEI +++K+ GY+  
Sbjct: 595 IRRLMEKRGVKKTAGYSSIAVAGQVHKFIVGDRSHPQIAEIVVMMEEIGRRLKSAGYSPI 654

Query: 424 TRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSK 483
           T  +  D++EEEKE  +  HSEKLA+AFGL+   P   + I+KN+R+C DCHSA+KL+S+
Sbjct: 655 TSQITVDVDEEEKEQALLAHSEKLAIAFGLVSLAPNLPVHIIKNLRVCEDCHSAIKLISR 714

Query: 484 VFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           ++ R+I +RDR  +HHF  G CSC ++W
Sbjct: 715 LWNREIIVRDRSRFHHFRGGVCSCNDFW 742



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 146/304 (48%), Gaps = 34/304 (11%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           + +I+ Y   G   +  + FD+   ++ V+W +++ GL + G +DDA R+  + P R++V
Sbjct: 144 SPIIHMYAELGLPGDARRAFDEASVKDVVAWTTVISGLAKMGLLDDARRLLARAPVRNVV 203

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           +W  LISG+++ GR  EA+  F  M S  + P+   ++ +LSAC QL  L++G  ++  +
Sbjct: 204 TWTGLISGYSRAGRAAEAVDCFNSMLSDGIAPDEVTVIGMLSACGQLKDLNFGCSLHMLV 263

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG------------------------ 201
             K + +   L  ALIDMYAKCG    A +VF + G                        
Sbjct: 264 GDKRMLMSDKLVVALIDMYAKCGDTGRAREVFDALGRGRGPQPWNAMIDGYCKVGHVDIA 323

Query: 202 --------DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL 253
                   D DV  + S I G    G   EA  LF  M+  G+  D+ + + +L+A + L
Sbjct: 324 RSLFDQMEDHDVITFNSLITGYIHGGRLREALLLFTKMRRHGLGADNFTMVGLLTASASL 383

Query: 254 GWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGT 313
           G + +G    H+  +   ++ ++     ++D+  + G +EEA      M ++ D   W  
Sbjct: 384 GALPQG-RALHACIEQRLVERDVYLGTALLDMYMKCGRVEEAMVAFKQMSVR-DVHTWSA 441

Query: 314 LLGA 317
           ++G 
Sbjct: 442 MIGG 445



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 85/195 (43%), Gaps = 33/195 (16%)

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           A  +F++MP  + +    L + F  +  P   + L+R M  +D+ P++     L   CA+
Sbjct: 56  ALSLFDRMPCSTFLFDTALRACFRASSGPDRPIILYRRMHGVDVPPDAFTFHFLFKCCAR 115

Query: 152 LGA-LDYGNWVYSYIQKKCIKLDSILCAA-LIDMYAKCGSIDLAMQVFHSYGDKDVSAYT 209
            GA +  G  +++   +  +     L A+ +I MYA+ G    A + F     KDV A+T
Sbjct: 116 GGAHVLLGRMLHAACFRTLLPSAVPLIASPIIHMYAELGLPGDARRAFDEASVKDVVAWT 175

Query: 210 SAIFGLA-------------------------------MNGHSIEAFELFENMKSKGISP 238
           + I GLA                                 G + EA + F +M S GI+P
Sbjct: 176 TVISGLAKMGLLDDARRLLARAPVRNVVTWTGLISGYSRAGRAAEAVDCFNSMLSDGIAP 235

Query: 239 DSISYIAVLSACSHL 253
           D ++ I +LSAC  L
Sbjct: 236 DEVTVIGMLSACGQL 250



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 107/253 (42%), Gaps = 47/253 (18%)

Query: 9   YDVFVKNSLIQFYSVCGRVRDARWVFDE-------SDDLDVVSWNSMINGYVRNGEILEG 61
           +DV   NSLI  Y   GR+R+A  +F +       +D+  +V    ++      G + +G
Sbjct: 333 HDVITFNSLITGYIHGGRLREALLLFTKMRRHGLGADNFTMV---GLLTASASLGALPQG 389

Query: 62  LKLFDKMPQR---NDVSW-NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQN 117
             L   + QR    DV    ++L   ++ G V++A   F QM  R + +W  +I G A N
Sbjct: 390 RALHACIEQRLVERDVYLGTALLDMYMKCGRVEEAMVAFKQMSVRDVHTWSAMIGGLAFN 449

Query: 118 GRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILC 177
           G  K AL  F  M+      NS   +++L+AC+    LD G   +               
Sbjct: 450 GMGKAALEHFFWMKCDGFHANSVTYIAVLTACSHSCLLDEGRLYFD-------------- 495

Query: 178 AALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGIS 237
                           M++ H+   + +  Y   I  L  +G   EA +L + M    + 
Sbjct: 496 ---------------EMRLLHNIRPQ-IEHYGCMIDLLGRSGLLDEAMDLVQTMP---MQ 536

Query: 238 PDSISYIAVLSAC 250
           P+++ + ++LSAC
Sbjct: 537 PNAVIWASILSAC 549


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/552 (38%), Positives = 326/552 (59%), Gaps = 42/552 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +++ + F  D+ ++N+L+  Y+ CG +  AR +FDE    DVV+W ++I GY ++    +
Sbjct: 40  LLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSRDVVTWTALITGYSQHDRPQD 99

Query: 61  GLKLFDKM------PQR---------------NDVSWNSILGGL-VRFG----------- 87
            L L  +M      P +                DV     L GL +R+G           
Sbjct: 100 ALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQLHGLCLRYGYDSNVYVSCAI 159

Query: 88  --------SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS 139
                    +++A  +F+ M  ++ VSW  LI+G+A+ G+  +A  LF  M   +++P  
Sbjct: 160 LDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTH 219

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
               S+L ACA +G+L+ G WV++ + K   KL + +   L+DMYAK GSI+ A +VF  
Sbjct: 220 FTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDR 279

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
              +DV ++ S + G + +G    A + FE M    I+P+ I+++ VL+ACSH G +++G
Sbjct: 280 LAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAGLLDEG 339

Query: 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACR 319
            +YF  M   + ++P++ HY  MVDLLGRAG L+ A  FI+ MP+KP   +WG LLGACR
Sbjct: 340 RHYF-DMMKKYNVEPQISHYVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVWGALLGACR 398

Query: 320 VHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGC 379
           +H+N E+G      + E D ++ G ++LL NIY    +  +A +VRK M++  +K+ P C
Sbjct: 399 MHKNMELGGYAAECIFELDSHYPGTHVLLYNIYALAGRWNDAAKVRKMMKESGVKKEPAC 458

Query: 380 SLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETV 439
           S +E++  VH F+A D +H + +EI+  WE+I  KIK  GY  ++  V+  ++++E+E  
Sbjct: 459 SWVEMENEVHVFVADDDAHPQRREIHNMWEQISDKIKEIGYVPDSSHVLLCMDQQEREAK 518

Query: 440 IGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHH 499
           + YHSEKLALAF L+ T PGS IRI KNIRIC DCHSA K VSK+ +R+I +RD   +HH
Sbjct: 519 LQYHSEKLALAFALLNTPPGSTIRIKKNIRICGDCHSAFKFVSKLVEREIIVRDTNRFHH 578

Query: 500 FEDGSCSCLEYW 511
           F DG+CSC +YW
Sbjct: 579 FCDGACSCEDYW 590



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 149/286 (52%), Gaps = 8/286 (2%)

Query: 53  VRNGEILEGLKLFDKMPQRND-VSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLI 111
           +  G+I+  L L  +   R+D V  N++L    + G +  A ++F++M  R +V+W  LI
Sbjct: 31  LNEGKIIHALLLNSRF--RDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSRDVVTWTALI 88

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDY--GNWVYSYIQKKC 169
           +G++Q+ RP++AL L  EM  + L+PN   L SLL A + +G+ D   G  ++    +  
Sbjct: 89  TGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQLHGLCLRYG 148

Query: 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFE 229
              +  +  A++DMYA+C  ++ A  +F     K+  ++ + I G A  G   +AF LF 
Sbjct: 149 YDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFS 208

Query: 230 NMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRA 289
           NM  + + P   +Y +VL AC+ +G +E+G  + H++    G K        ++D+  ++
Sbjct: 209 NMLRENVKPTHFTYSSVLCACASMGSLEQG-KWVHALMIKWGEKLVAFVGNTLLDMYAKS 267

Query: 290 GLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMG-QRIGNML 334
           G +E+A+     +  K D V W ++L     H   ++  QR   ML
Sbjct: 268 GSIEDAKKVFDRLA-KRDVVSWNSMLTGYSQHGLGKVALQRFEEML 312



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 82/176 (46%), Gaps = 4/176 (2%)

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           +LL  C  L  L+ G  +++ +     + D ++   L+++YAKCG +  A ++F     +
Sbjct: 20  TLLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSR 79

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVE--KGFY 261
           DV  +T+ I G + +    +A  L   M   G+ P+  +  ++L A S +G  +  +G  
Sbjct: 80  DVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQG-R 138

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
             H +   +G    +     ++D+  R   LEEA+  I  + +  + V W  L+  
Sbjct: 139 QLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQ-LIFDVMVSKNEVSWNALIAG 193


>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 184/421 (43%), Positives = 285/421 (67%), Gaps = 1/421 (0%)

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           A +VF+ MP+R++++W  LISG+ QNG P+E++ LF  M     +P+SA +VSLLS+C+Q
Sbjct: 243 AKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQ 302

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSA 211
           LGALD+G W++ Y       L+ +L  +LI+MY +CG++  A +VF S  +++V  +T+ 
Sbjct: 303 LGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAM 362

Query: 212 IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG 271
           I G  M+G+  +A ELF  M++ G  P++I+++AVLSAC+H G ++ G   F SM + +G
Sbjct: 363 ISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYG 422

Query: 272 IKPELDHYACMVDLLGRAGLLEEAENFIAS-MPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
           + P ++H  CMVD+ GRAGLL +A  FI   +P +P   +W ++LGACR+HRN ++G ++
Sbjct: 423 LVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKV 482

Query: 331 GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHE 390
              ++  +  + G Y++LSNIY    + +  E VR  M +R++K+  G S IE++   + 
Sbjct: 483 AEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIEINRKTYL 542

Query: 391 FLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALA 450
           F  GD+SH +T  IY++ +E++ +    GY     S+M D+EEEE++  + YHSEKLALA
Sbjct: 543 FSMGDKSHPQTNTIYRYLDELMCRCSESGYVPAPESLMHDLEEEERDYALRYHSEKLALA 602

Query: 451 FGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEY 510
           FGL+ T  G  IRIVKN+RIC DCHSA+K +S +  R+I +RD+  +HHF+DGSCSCL+Y
Sbjct: 603 FGLLKTNQGETIRIVKNLRICEDCHSAIKHISIIADREIIVRDKFRFHHFKDGSCSCLDY 662

Query: 511 W 511
           W
Sbjct: 663 W 663



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 115/240 (47%), Gaps = 44/240 (18%)

Query: 7   FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFD 66
           +  D++V+ +LI  Y+    ++ A+ VFD      +++WNS+I+GY +NG   E + LF 
Sbjct: 220 YGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFH 279

Query: 67  KMPQR----------------------------------NDVSWNSILGG-----LVRFG 87
            M +                                   N    N +LG        R G
Sbjct: 280 LMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCG 339

Query: 88  SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLS 147
           +V  A  VF+ M +R++V+W  +ISG+  +G  ++A+ LF EM++    PN+   V++LS
Sbjct: 340 NVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLS 399

Query: 148 ACAQLGALDYGNWVYSYIQKKCIKLDSI---LCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           ACA  G +D G  V+S +++    +  +   +C  ++DM+ + G ++ A Q    +  K+
Sbjct: 400 ACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVC--MVDMFGRAGLLNDAYQFIKKFIPKE 457



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 112/236 (47%), Gaps = 4/236 (1%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           GS+  A R+F  +P      +  L+   ++ G   + +  +R M       ++    S++
Sbjct: 137 GSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVI 196

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
            ACA L AL  G  ++S++       D  + AALI +YAK   + +A +VF +   + + 
Sbjct: 197 KACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTII 256

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
           A+ S I G   NG   E+  LF  M   G  PDS + +++LS+CS LG ++ G  + H  
Sbjct: 257 AWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGC-WLHDY 315

Query: 267 FDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVI-WGTLLGACRVH 321
            D +G    +     ++++  R G + +A     S  MK  NV+ W  ++    +H
Sbjct: 316 ADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDS--MKERNVVTWTAMISGYGMH 369



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 86/170 (50%), Gaps = 11/170 (6%)

Query: 5   NSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKL 64
           N F  +V +  SLI  Y+ CG V  AR VFD   + +VV+W +MI+GY  +G   + ++L
Sbjct: 319 NGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMEL 378

Query: 65  FDKM----PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKR-SLVSW----VVLISGFA 115
           F +M    P+ N++++ ++L      G +DD  RVF+ M +   LV      V ++  F 
Sbjct: 379 FTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFG 438

Query: 116 QNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           + G   +A    ++   +  EP  A+  S+L AC      D G  V  ++
Sbjct: 439 RAGLLNDAYQFIKKF--IPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHV 486


>gi|297737119|emb|CBI26320.3| unnamed protein product [Vitis vinifera]
          Length = 522

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/468 (41%), Positives = 297/468 (63%), Gaps = 19/468 (4%)

Query: 60  EGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGF----- 114
             L +F+ +P      +N+++  L    ++     +   +  R L    +  +GF     
Sbjct: 58  HALSIFNHIPNPTIFLYNTLISSL---ANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSL 114

Query: 115 --AQNGRP---------KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYS 163
             A   +P         K  L LF EMQ   ++ N   LV+L+SACA+LGAL  G W + 
Sbjct: 115 FKACGSQPWLRHDIFLIKSVLTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWAHV 174

Query: 164 YIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIE 223
           Y+ K  +KL+  +  ALIDMY+KCG +DLA Q+F     +D   Y + I G A++G+  +
Sbjct: 175 YVLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQ 234

Query: 224 AFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMV 283
           A +LF+ M  +G++PD ++ +  + +CSH+G VE+G   F SM +V+G++P+L+HY C+V
Sbjct: 235 ALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCLV 294

Query: 284 DLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDG 343
           DLLGRAG L EAE  + +MPMKP+ VIW +LLGA RVH N E+G+ +   LI+ +    G
Sbjct: 295 DLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPETSG 354

Query: 344 RYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQE 403
            Y+LLSN+Y    + ++ + VRK M+   I + PG SL+E+ G +HEFL GD++H +++E
Sbjct: 355 NYVLLSNMYASINRWDDVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFLMGDKTHPRSKE 414

Query: 404 IYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIR 463
           IY   EE+ +++  YG+   T  V+FDIEEEEKE  + YHSE+LA+AF LI +   + IR
Sbjct: 415 IYLKLEEMSRRLHEYGHKPRTLEVLFDIEEEEKEDALSYHSERLAIAFALIASHHCAPIR 474

Query: 464 IVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           I+KN+R+C DCH++ KL+SK+++R+I +RDR  +HHF++G+CSC +YW
Sbjct: 475 IIKNLRVCGDCHTSSKLISKIYEREIIVRDRNRFHHFKEGACSCSDYW 522



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 83/175 (47%), Gaps = 16/175 (9%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K++   + FV  +LI  YS CG +  A  +FD+    D + +N+MI G+  +G   + 
Sbjct: 176 VLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQA 235

Query: 62  LKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQM-------PKRSLVSWVVL 110
           L LF KM       +DV+    +      G V++ C VF  M       PK  L  +  L
Sbjct: 236 LDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPK--LEHYGCL 293

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           +    + GR +EA      + ++ ++PN+ I  SLL A    G L+ G  V  ++
Sbjct: 294 VDLLGRAGRLREA---EERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHL 345


>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 189/420 (45%), Positives = 286/420 (68%), Gaps = 7/420 (1%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +K   A DV+V N+L++ Y+VC  +R AR VFD S   D+VSW +MI GYV+ G   EG+
Sbjct: 167 IKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGV 226

Query: 63  KLFDKMPQRNDVSWNSILGGLV-----RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQN 117
            L+  + + ++V+ +  +G  +     + G  + A +VF +MP +++VSW  +ISG AQ 
Sbjct: 227 GLY--IIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQK 284

Query: 118 GRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILC 177
           G+ KE+L +FR+MQ L ++P+   LV++L++CA LG L+ G WV++Y+ +  I+ D  + 
Sbjct: 285 GQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIG 344

Query: 178 AALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGIS 237
            AL+DMYAKCGSID A  VF +   KDV +YT+ I GLAM+G   +A +LF  M   GI 
Sbjct: 345 NALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIE 404

Query: 238 PDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAEN 297
           PD ++++ VL+ACSH+G VE+G  YF  M  ++ ++P+L+HY CMVDLLGRAGL+ EAE 
Sbjct: 405 PDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEE 464

Query: 298 FIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLK 357
           FI +MP++PD  + G LLGAC++H   E+G+ +   + + +   DG Y+L+SNIY    +
Sbjct: 465 FIRNMPIEPDAFVLGALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANR 524

Query: 358 GENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKN 417
             +A ++RKTM++R +++ PGCS IELDGV+HEF  GD+SH K +EIY+  +EI+  +KN
Sbjct: 525 WRDALKLRKTMKERNLEKTPGCSSIELDGVIHEFQKGDKSHPKIKEIYKLLDEIMSHLKN 584



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 99/237 (41%), Gaps = 40/237 (16%)

Query: 92  ACRVFNQMPKRSLVSWVVLISGFA-QNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           A  +  Q+   +L  +  +I G A  N    E L ++++M S  + P++  +  +L ACA
Sbjct: 92  ALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACA 151

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
           +  A+  G  V+    K  +  D  +   L+ MYA C  I  A +VF +   +D+ ++T+
Sbjct: 152 ESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTT 211

Query: 211 AIFGLAMNGHSIE----------------------------------AFELFENMKSKGI 236
            I G    G + E                                  A ++F+ M  K +
Sbjct: 212 MIQGYVKMGFAREGVGLYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNV 271

Query: 237 SPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLE 293
               +S+ +++S  +  G  ++  Y F  M  + G+KP+      +++     G+LE
Sbjct: 272 ----VSWNSMISGLAQKGQFKESLYMFRKMQRL-GVKPDDVTLVAVLNSCANLGVLE 323


>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
 gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
          Length = 673

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/550 (37%), Positives = 331/550 (60%), Gaps = 46/550 (8%)

Query: 7   FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFD 66
           F  D +  ++L+  Y  C R  DAR  FDE  D + V   +M +GYVRN  +   L+LF 
Sbjct: 125 FPSDPYSASALLHMYHHCSRPMDARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFR 184

Query: 67  KM------------------------P-----------------QRNDVSWNSILGGLVR 85
            M                        P                 +RN    N++L    +
Sbjct: 185 AMIASDSASVVDEAAALVAFSASARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAK 244

Query: 86  FGSVD--DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD--LEPNSAI 141
            GS D   A +VF+ M +R +VSW  +I+ +AQNG   EA+ L+ +M ++   ++ N+  
Sbjct: 245 GGSRDLEVARKVFDTM-ERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVA 303

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           L ++L ACA  GA+  G  +++ + +  ++ +  +  +++DMY+KCG +++A + F    
Sbjct: 304 LSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIK 363

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
           +K++ ++++ I G  M+G   EA E+F  MK  G+ P+ I++I+VL+ACSH G +++G Y
Sbjct: 364 EKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRY 423

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           ++++M    GI+  ++HY CMVDLLGRAG L+EA + I  M +KPD  IWG LL ACR+H
Sbjct: 424 WYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIH 483

Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
           +N E+ +     L E D ++ G Y+LLSNIY E    ++ E +R  ++ R+I++ PG S 
Sbjct: 484 KNVELAEMSVKRLFELDASNSGYYVLLSNIYAEARMWKDVERIRLLVKTRRIEKPPGYSS 543

Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIG 441
            EL G ++ F  GD+SH +  EIY + E+++++++  GY   T SV+ D++EEEKE+ + 
Sbjct: 544 FELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPNTGSVLHDLDEEEKESALR 603

Query: 442 YHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
            HSEKLA+AF L+ + P SVI I+KN+R+CSDCH+AMK ++K+ +R+I IRD + +HHF+
Sbjct: 604 IHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFK 663

Query: 502 DGSCSCLEYW 511
           DG CSC +YW
Sbjct: 664 DGLCSCRDYW 673



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 83/157 (52%), Gaps = 12/157 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VV+     +V+V  S++  YS CGRV  A   F +  + +++SW++MI GY  +G   E 
Sbjct: 327 VVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEA 386

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLIS 112
           L++F +M +     N +++ S+L      G +D+    +N M +       +  +  ++ 
Sbjct: 387 LEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVD 446

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
              + G   EA +L +EM+   ++P++AI  +LLSAC
Sbjct: 447 LLGRAGCLDEAYSLIKEMK---VKPDAAIWGALLSAC 480


>gi|224088870|ref|XP_002308572.1| predicted protein [Populus trichocarpa]
 gi|222854548|gb|EEE92095.1| predicted protein [Populus trichocarpa]
          Length = 433

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 194/433 (44%), Positives = 282/433 (65%)

Query: 79  ILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPN 138
           +L G  R G V    ++F++MP+R ++SW  ++  +  NG+  EAL  F+ M+   L P+
Sbjct: 1   MLAGFARDGQVSVVQKLFDEMPERDVISWNTMLMAYVHNGKLGEALECFKRMRESGLVPD 60

Query: 139 SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH 198
            A LV++LSA AQL  L++G  ++S I    + +   +  AL+DMYAKCG I+ +  +F 
Sbjct: 61  EATLVTMLSASAQLCLLEHGQSIHSIIDSLSLPMTISIGTALLDMYAKCGCIEQSRLLFE 120

Query: 199 SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEK 258
           +   +DVS +   I GLA +G   +A  LFE   ++G+ P +++++ VL+ACS  G V++
Sbjct: 121 NMPRRDVSTWNVMICGLASHGLGKDALTLFERFLNEGLHPMNVTFVGVLNACSRAGLVKE 180

Query: 259 GFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
           G +YF  M D +GI+PE++HY CMVDLLGRAGL+ EA   I SM + PD V+W  +L AC
Sbjct: 181 GRHYFQMMTDSYGIEPEMEHYGCMVDLLGRAGLVFEAIKVIESMAISPDPVLWAMVLCAC 240

Query: 319 RVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPG 378
           R+H  AE+G++IGN LIE D  +DG Y+ L++IY  + K E+   VR+ M +R   +  G
Sbjct: 241 RIHGLAELGEKIGNRLIELDPTYDGHYVQLASIYANSRKWEDVVRVRRLMAERNTSKVAG 300

Query: 379 CSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKET 438
            SLIE  G VH F+AG R HE++ EI +  E I  ++   GY      V+ DI EEEKE 
Sbjct: 301 WSLIEARGKVHRFVAGHREHEQSLEIQKMLEIIETRLAAAGYVPNVSPVLHDIGEEEKEN 360

Query: 439 VIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYH 498
            I  HSE+LA+AFGL+ T PGS IRIVKN+R+C DCH   K++S+VF+R+I +RD   +H
Sbjct: 361 AIKVHSERLAIAFGLLVTGPGSCIRIVKNLRVCWDCHEVTKMISRVFEREIIVRDGSRFH 420

Query: 499 HFEDGSCSCLEYW 511
           HF++G CSCL+YW
Sbjct: 421 HFKEGKCSCLDYW 433



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 112/275 (40%), Gaps = 74/275 (26%)

Query: 25  GRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDV---------- 74
           G+V   + +FDE  + DV+SWN+M+  YV NG++ E L+ F +M +   V          
Sbjct: 9   GQVSVVQKLFDEMPERDVISWNTMLMAYVHNGKLGEALECFKRMRESGLVPDEATLVTML 68

Query: 75  -------------SWNSILGGL----------------VRFGSVDDACRVFNQMPKRSLV 105
                        S +SI+  L                 + G ++ +  +F  MP+R + 
Sbjct: 69  SASAQLCLLEHGQSIHSIIDSLSLPMTISIGTALLDMYAKCGCIEQSRLLFENMPRRDVS 128

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           +W V+I G A +G  K+AL LF    +  L P +   V +L+AC++ G +  G   +  +
Sbjct: 129 TWNVMICGLASHGLGKDALTLFERFLNEGLHPMNVTFVGVLNACSRAGLVKEGRHYFQMM 188

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG-DKDVSAYTSAIFGLAMNGHSIEA 224
                                            SYG + ++  Y   +  L   G   EA
Sbjct: 189 TD-------------------------------SYGIEPEMEHYGCMVDLLGRAGLVFEA 217

Query: 225 FELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
            ++ E+M    ISPD + +  VL AC   G  E G
Sbjct: 218 IKVIESM---AISPDPVLWAMVLCACRIHGLAELG 249



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 76/177 (42%), Gaps = 16/177 (9%)

Query: 6   SFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLF 65
           S    + +  +L+  Y+ CG +  +R +F+     DV +WN MI G   +G   + L LF
Sbjct: 91  SLPMTISIGTALLDMYAKCGCIEQSRLLFENMPRRDVSTWNVMICGLASHGLGKDALTLF 150

Query: 66  DKMPQRN----DVSWNSILGGLVRFGSVDDACRVFNQMP-----KRSLVSWVVLISGFAQ 116
           ++         +V++  +L    R G V +    F  M      +  +  +  ++    +
Sbjct: 151 ERFLNEGLHPMNVTFVGVLNACSRAGLVKEGRHYFQMMTDSYGIEPEMEHYGCMVDLLGR 210

Query: 117 NGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD 173
            G   EA+ +   ++S+ + P+  +   +L AC   G  + G      I  + I+LD
Sbjct: 211 AGLVFEAIKV---IESMAISPDPVLWAMVLCACRIHGLAELGE----KIGNRLIELD 260


>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 184/421 (43%), Positives = 285/421 (67%), Gaps = 1/421 (0%)

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           A +VF+ MP+R++++W  LISG+ QNG P+E++ LF  M     +P+SA +VSLLS+C+Q
Sbjct: 179 AKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQ 238

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSA 211
           LGALD+G W++ Y       L+ +L  +LI+MY +CG++  A +VF S  +++V  +T+ 
Sbjct: 239 LGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAM 298

Query: 212 IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG 271
           I G  M+G+  +A ELF  M++ G  P++I+++AVLSAC+H G ++ G   F SM + +G
Sbjct: 299 ISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYG 358

Query: 272 IKPELDHYACMVDLLGRAGLLEEAENFIAS-MPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
           + P ++H  CMVD+ GRAGLL +A  FI   +P +P   +W ++LGACR+HRN ++G ++
Sbjct: 359 LVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKV 418

Query: 331 GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHE 390
              ++  +  + G Y++LSNIY    + +  E VR  M +R++K+  G S IE++   + 
Sbjct: 419 AEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIEINRKTYL 478

Query: 391 FLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALA 450
           F  GD+SH +T  IY++ +E++ +    GY     S+M D+EEEE++  + YHSEKLALA
Sbjct: 479 FSMGDKSHPQTNTIYRYLDELMCRCSESGYVPAPESLMHDLEEEERDYALRYHSEKLALA 538

Query: 451 FGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEY 510
           FGL+ T  G  IRIVKN+RIC DCHSA+K +S +  R+I +RD+  +HHF+DGSCSCL+Y
Sbjct: 539 FGLLKTNQGETIRIVKNLRICEDCHSAIKHISIIADREIIVRDKFRFHHFKDGSCSCLDY 598

Query: 511 W 511
           W
Sbjct: 599 W 599



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 115/240 (47%), Gaps = 44/240 (18%)

Query: 7   FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFD 66
           +  D++V+ +LI  Y+    ++ A+ VFD      +++WNS+I+GY +NG   E + LF 
Sbjct: 156 YGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFH 215

Query: 67  KMPQR----------------------------------NDVSWNSILGG-----LVRFG 87
            M +                                   N    N +LG        R G
Sbjct: 216 LMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCG 275

Query: 88  SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLS 147
           +V  A  VF+ M +R++V+W  +ISG+  +G  ++A+ LF EM++    PN+   V++LS
Sbjct: 276 NVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLS 335

Query: 148 ACAQLGALDYGNWVYSYIQKKCIKLDSI---LCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           ACA  G +D G  V+S +++    +  +   +C  ++DM+ + G ++ A Q    +  K+
Sbjct: 336 ACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVC--MVDMFGRAGLLNDAYQFIKKFIPKE 393



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 112/236 (47%), Gaps = 4/236 (1%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           GS+  A R+F  +P      +  L+   ++ G   + +  +R M       ++    S++
Sbjct: 73  GSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVI 132

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
            ACA L AL  G  ++S++       D  + AALI +YAK   + +A +VF +   + + 
Sbjct: 133 KACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTII 192

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
           A+ S I G   NG   E+  LF  M   G  PDS + +++LS+CS LG ++ G  + H  
Sbjct: 193 AWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGC-WLHDY 251

Query: 267 FDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVI-WGTLLGACRVH 321
            D +G    +     ++++  R G + +A     S  MK  NV+ W  ++    +H
Sbjct: 252 ADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDS--MKERNVVTWTAMISGYGMH 305



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 86/170 (50%), Gaps = 11/170 (6%)

Query: 5   NSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKL 64
           N F  +V +  SLI  Y+ CG V  AR VFD   + +VV+W +MI+GY  +G   + ++L
Sbjct: 255 NGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMEL 314

Query: 65  FDKM----PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKR-SLVSW----VVLISGFA 115
           F +M    P+ N++++ ++L      G +DD  RVF+ M +   LV      V ++  F 
Sbjct: 315 FTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFG 374

Query: 116 QNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           + G   +A    ++   +  EP  A+  S+L AC      D G  V  ++
Sbjct: 375 RAGLLNDAYQFIKKF--IPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHV 422


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 189/462 (40%), Positives = 290/462 (62%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N+++  Y + G+I+   ++FD M  ++ VSWN+IL G +  G +D A  VF  MP ++ +
Sbjct: 341 NALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDL 400

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           SW+V++SG+   G  ++AL LF +M++ D++P        ++AC +LGAL +G  +++++
Sbjct: 401 SWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHL 460

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
            +   +  +    AL+ MYAKCG+++ A  VF    + D  ++ + I  L  +GH  EA 
Sbjct: 461 VQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREAL 520

Query: 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL 285
           ELF+ M ++GI PD IS++ +L+AC+H G V++GF+YF SM    GI P  DHYA ++DL
Sbjct: 521 ELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDL 580

Query: 286 LGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRY 345
           LGR+G + EA + I +MP +P   IW  +L  CR + + E G    + L      HDG Y
Sbjct: 581 LGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTY 640

Query: 346 ILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIY 405
           ILLSN Y    +  +A  VRK MR R +K+ PGCS IE+   +H FL GD  H + QE+Y
Sbjct: 641 ILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVY 700

Query: 406 QFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIV 465
           QF E I  +++  GY  +T+ V+ D+E  EKE ++  HSEKLA+ FGL+   PG+ + ++
Sbjct: 701 QFLEVIGARMRKLGYVPDTKFVLHDMEPHEKEYILFAHSEKLAVGFGLLKLPPGATVTVL 760

Query: 466 KNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSC 507
           KN+RIC DCH+AM  +SK   R+I +RD + +HHF+DG CSC
Sbjct: 761 KNLRICGDCHTAMMFMSKAVGREIVVRDVRRFHHFKDGECSC 802



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 151/355 (42%), Gaps = 65/355 (18%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K+  A  + V N+LI  Y  C              D    SW++              
Sbjct: 189 VLKSGAAAVLSVSNALIALYMKC--------------DTPEASWDAR------------- 221

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
            K+ D+MP ++D++W +++ G VR G V+ A  VF ++  +  V W  +ISG+ Q+G   
Sbjct: 222 -KVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCA 280

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI---QKKCIKLDSI-LC 177
           +A  LFR M S  +  +     S+LSACA  G   +G  V+  I   Q   +   ++ + 
Sbjct: 281 DAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVN 340

Query: 178 AALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS--------------------------- 210
            AL+ +Y+K G I +A ++F +   KDV ++ +                           
Sbjct: 341 NALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDL 400

Query: 211 ----AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
                + G    G S +A +LF  M+++ + P   +Y   ++AC  LG ++ G    H+ 
Sbjct: 401 SWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHG-RQLHAH 459

Query: 267 FDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
               G +        ++ +  + G + +A      MP   D+V W  ++ A   H
Sbjct: 460 LVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMP-NLDSVSWNAMISALGQH 513


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/538 (39%), Positives = 318/538 (59%), Gaps = 45/538 (8%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDV 74
           N L+  Y   G + +AR VFD+  + +VVSW +MI GYV+ G I E   LF +MP+RN V
Sbjct: 29  NGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLIEEAELLFWRMPERNVV 88

Query: 75  SWNSILGGLVRFGSVDDACR-------------------------------VFNQMPKRS 103
           SW  +LGGL+  G VD+A +                               +F++MP+R+
Sbjct: 89  SWTVMLGGLIEDGRVDEARQLFDMMPVKDVVASTNMIDGLCSEGRLIEAREIFDEMPQRN 148

Query: 104 LVSWVVLISG-------------FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           +V+W  +ISG             + + G   EALALF  MQ   + P+   ++S+LS C 
Sbjct: 149 VVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSLMQREGVRPSFPSVISVLSVCG 208

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
            L +LD+G  V+S + +    +D  + + LI MY KCG +  A +VF  +  KD+  + S
Sbjct: 209 SLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSKDIVMWNS 268

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I G A +G   +A E+F +M S  I+PD I++I VLSACS+ G V++G   F SM   +
Sbjct: 269 IIAGYAQHGFGEKALEVFHDMFSSSIAPDEITFIGVLSACSYTGKVKEGLEIFESMKSKY 328

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
            + P+ +HYACMVDLLGRAG L EA N I +MP++ D ++WG LLGACR H+N ++ +  
Sbjct: 329 QVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLGACRTHKNLDLAEIA 388

Query: 331 GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHE 390
              L++ + N+ G YILLSN+Y    + ++  E+RKTMR + ++++PGCS IE+D  VH 
Sbjct: 389 AKKLLQLEPNNAGPYILLSNLYSSQSRWKDVVELRKTMRAKNLRKSPGCSWIEVDKKVHI 448

Query: 391 FL-AGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLAL 449
           F   G  SH + + I +   ++   ++  GY  +   VM D++EEEK   +  HSEKLA+
Sbjct: 449 FSGGGSTSHPEHEMILKKLGKLGALLREAGYCPDGSFVMHDVDEEEKVHSLRDHSEKLAV 508

Query: 450 AFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSC 507
           A+GL+    G  IR++KN+R+C D HS +KL+++V  R+I +RD   +HHF+DG CSC
Sbjct: 509 AYGLLKVPEGMPIRVMKNLRVCGDSHSTIKLIAQVTGREIILRDTNRFHHFKDGLCSC 566



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 130/284 (45%), Gaps = 23/284 (8%)

Query: 51  GYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVL 110
           GY +N    E  KLFDKMP+ N +SWN ++ G V+ G + +A +VF++MP+R++VSW  +
Sbjct: 3   GYFQNKRPREARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWTAM 62

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCI 170
           I G+ Q G  +EA  LF  M     E N      +L    + G +D    ++  +  K  
Sbjct: 63  IRGYVQEGLIEEAELLFWRMP----ERNVVSWTVMLGGLIEDGRVDEARQLFDMMPVK-- 116

Query: 171 KLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFG-------------LAM 217
             D +    +ID     G +  A ++F     ++V A+TS I G                
Sbjct: 117 --DVVASTNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYER 174

Query: 218 NGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELD 277
            G  +EA  LF  M+ +G+ P   S I+VLS C  L  ++ G    HS         ++ 
Sbjct: 175 KGFELEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHG-RQVHSQLVRSQFDIDIY 233

Query: 278 HYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
             + ++ +  + G L  A+        K D V+W +++     H
Sbjct: 234 VSSVLITMYIKCGDLVTAKRVFDRFSSK-DIVMWNSIIAGYAQH 276



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 108/244 (44%), Gaps = 55/244 (22%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMING-------------YVRNG 56
           DV    ++I      GR+ +AR +FDE    +VV+W SMI+G             Y R G
Sbjct: 117 DVVASTNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKG 176

Query: 57  EILEGLKLFDKMPQRNDV--SWNSILGGL------------------------------- 83
             LE L LF  M QR  V  S+ S++  L                               
Sbjct: 177 FELEALALFSLM-QREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVS 235

Query: 84  -------VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136
                  ++ G +  A RVF++   + +V W  +I+G+AQ+G  ++AL +F +M S  + 
Sbjct: 236 SVLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIA 295

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKK-CIKLDSILCAALIDMYAKCGSIDLAMQ 195
           P+    + +LSAC+  G +  G  ++  ++ K  +   +   A ++D+  + G ++ AM 
Sbjct: 296 PDEITFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMN 355

Query: 196 VFHS 199
           +  +
Sbjct: 356 LIEN 359



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 81/164 (49%), Gaps = 12/164 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +V++ F  D++V + LI  Y  CG +  A+ VFD     D+V WNS+I GY ++G   + 
Sbjct: 223 LVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKA 282

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLIS 112
           L++F  M       +++++  +L      G V +   +F  M  +  V      +  ++ 
Sbjct: 283 LEVFHDMFSSSIAPDEITFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPKTEHYACMVD 342

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALD 156
              + G+  EA+ L   ++++ +E ++ +  +LL AC     LD
Sbjct: 343 LLGRAGKLNEAMNL---IENMPVEADAIVWGALLGACRTHKNLD 383


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 199/550 (36%), Positives = 324/550 (58%), Gaps = 41/550 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +K    +D+FV N+LI  Y+  G +R A  +F++    D+VSWNS++  + +N + +  L
Sbjct: 267 IKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIAL 326

Query: 63  KLFDKMPQRNDVS--------------------------------W--------NSILGG 82
            +++KM     V                                 W        N+I+  
Sbjct: 327 GVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDM 386

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD-LEPNSAI 141
             + G +D A +VF  +P + ++SW  LI+G++QNG   EA+ ++  M+      PN   
Sbjct: 387 YAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGT 446

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
            VS+L+A +QLGAL  G   +  + K  +  D  +   L+DMY KCG +  A+ +F+   
Sbjct: 447 WVSILTAHSQLGALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKLADALSLFYEVP 506

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
            +   ++ + I    ++G+ ++A +LF+ M+S+G+ PD I+++++LSACSH G V++G +
Sbjct: 507 HQSSVSWNAIISCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQW 566

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            F  M + +GI+P L HY CMVDL GRAG LE+A NF+ +MP++PD  +WG LLGACR+H
Sbjct: 567 CFQLMQETYGIRPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGALLGACRIH 626

Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
            N E+ + + + L++ +  + G Y+LLSNIY +    E  +EVR   R R +K+ PG S 
Sbjct: 627 ENVELVRTVSDHLLKVESENVGYYVLLSNIYAKLGHWEGVDEVRSLARDRGLKKTPGWSS 686

Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIG 441
           IE+D  +  F  G+++H K +EIY     +  K+K+ GY  +   V+ D+E++EKE ++ 
Sbjct: 687 IEVDKKIDVFYTGNQTHPKCEEIYSELRNLTAKMKSIGYVPDYNFVLQDVEDDEKENILT 746

Query: 442 YHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
            HSE+LA+AFG+I T P + ++I KN+R+C DCH+A K +SK+ +R+I +RD   +HHF+
Sbjct: 747 SHSERLAMAFGIISTPPKTTLQIFKNLRVCGDCHNATKFISKITEREIIVRDSNRFHHFK 806

Query: 502 DGSCSCLEYW 511
           DG CSC +YW
Sbjct: 807 DGVCSCGDYW 816



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 108/362 (29%), Positives = 184/362 (50%), Gaps = 43/362 (11%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V+K  F  DV++  S I FYS  G V  A  +FD     D+ +WN+MI+G+  NG++ E
Sbjct: 164 LVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAE 223

Query: 61  GLKLFDKMP-------------------QRNDV--------------------SWNSILG 81
            L++FD+M                    Q +D+                      N+++ 
Sbjct: 224 ALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALIN 283

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              +FG +  A  +FNQM  R +VSW  L++ F QN +P  AL ++ +M S+ + P+   
Sbjct: 284 MYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLT 343

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI-LCAALIDMYAKCGSIDLAMQVFHSY 200
           LVSL S  A+LG       ++ ++ ++C  L  I L  A+IDMYAK G ID A +VF   
Sbjct: 344 LVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGL 403

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMK-SKGISPDSISYIAVLSACSHLGWVEKG 259
             KDV ++ S I G + NG + EA +++ +M+   G  P+  +++++L+A S LG +++G
Sbjct: 404 PVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQG 463

Query: 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACR 319
               H     + +  ++    C+VD+ G+ G L +A +    +P +  +V W  ++    
Sbjct: 464 MKA-HGQLIKNFLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQ-SSVSWNAIISCHG 521

Query: 320 VH 321
           +H
Sbjct: 522 LH 523



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 156/349 (44%), Gaps = 52/349 (14%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDK--- 67
           +F+   LI  Y+  G +  AR  FD+    DV +WNSMI+ Y R G     +  F++   
Sbjct: 75  IFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISAYARIGHFHAAVDCFNEFLS 134

Query: 68  --MPQRNDVSWNSIL---GGL-----------------------------VRFGSVDDAC 93
               Q +  ++  ++   G L                              RFG V  AC
Sbjct: 135 TSFLQSDHYTFPPVIRACGNLDDGRKVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLAC 194

Query: 94  RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153
            +F+ M  R + +W  +ISGF  NG+  EAL +F EM+   +  +S  + SLL  C QL 
Sbjct: 195 NLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLD 254

Query: 154 ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIF 213
            +  G  ++ Y  K  ++ D  +C ALI+MYAK G +  A  +F+    +D+ ++ S + 
Sbjct: 255 DIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLA 314

Query: 214 GLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIK 273
               N   + A  ++  M S G+ PD ++ +++ S  + LG        F S   +HG  
Sbjct: 315 AFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELG-------NFLSSRSIHGFV 367

Query: 274 P-------ELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
                   ++     ++D+  + G ++ A      +P+K D + W +L+
Sbjct: 368 TRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVK-DVISWNSLI 415



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 114/237 (48%), Gaps = 14/237 (5%)

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD-LEPNSAILVS 144
            G +  A   F+Q+  + + +W  +IS +A+ G    A+  F E  S   L+ +      
Sbjct: 88  LGDIPHARLTFDQIQTKDVYTWNSMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPP 147

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           ++ AC   G LD G  V+  + K   + D  + A+ I  Y++ G + LA  +F +   +D
Sbjct: 148 VIRAC---GNLDDGRKVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRD 204

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           +  + + I G  +NG   EA E+F+ M+ K +S DS++  ++L  C  L  +  G     
Sbjct: 205 IGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGV---- 260

Query: 265 SMFDVHGIK--PELDHYAC--MVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
            +  V+ IK   E D + C  ++++  + G L  AE     M ++ D V W +LL A
Sbjct: 261 -LIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVR-DIVSWNSLLAA 315



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 81/157 (51%), Gaps = 12/157 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++KN   +D+FV   L+  Y  CG++ DA  +F E      VSWN++I+ +  +G  L+ 
Sbjct: 470 LIKNFLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVSWNAIISCHGLHGYGLKA 529

Query: 62  LKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMP-----KRSLVSWVVLIS 112
           +KLF +M     + + +++ S+L      G VD+    F  M      + SL  +  ++ 
Sbjct: 530 VKLFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQLMQETYGIRPSLKHYGCMVD 589

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
            F + G  ++A   F  ++++ + P+ ++  +LL AC
Sbjct: 590 LFGRAGHLEKA---FNFVKNMPVRPDVSVWGALLGAC 623


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/534 (38%), Positives = 310/534 (58%), Gaps = 32/534 (5%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DV    ++I      GR+ +AR +FDE    +VV+W SMI+GY  N ++    KLF+ MP
Sbjct: 170 DVVASTNMIGGLCSEGRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVMP 229

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV------------------------ 105
            +N+V+W ++L G  R G +++A  +F  MP + +                         
Sbjct: 230 DKNEVTWTAMLKGYTRSGRINEAAELFKAMPVKPVAACNGMIMGFGLNGEVGKARWVFDQ 289

Query: 106 -------SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
                  +W  LI  + + G   EALALF  MQ   + PN   ++S+LS C  L +LD+G
Sbjct: 290 MKEKDDGTWSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISILSVCGSLASLDHG 349

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
             V+S + +    LD  + + LI MY KCG +    +VF  +  KD+  + S I G A +
Sbjct: 350 RQVHSQLVRSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQH 409

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDH 278
           G   +A E+F  M S G +PD I++I VLSAC + G V++G   F SM   + +  + +H
Sbjct: 410 GFGEKALEVFHEMFSSGAAPDEITFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQKTEH 469

Query: 279 YACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338
           YACMVDLLGRAG L EA N I +MP++ D ++WG LL ACR H+N ++ +     L++ +
Sbjct: 470 YACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLSACRTHKNLDLAEIAAKKLLQLE 529

Query: 339 QNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFL-AGDRS 397
            +  G YILLSN+Y    + ++  E+RKTMR R + ++PGCS IE+D  VH F   G  S
Sbjct: 530 PSSAGPYILLSNLYASQSRWKDVAELRKTMRARNVSKSPGCSWIEVDNKVHMFTGGGSAS 589

Query: 398 HEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTK 457
           H + + I +  E++   ++  GY  +   VM D++EE+K   + +HSEK+A+A+GL+   
Sbjct: 590 HPEHEMIMKKLEKLGASLREAGYCPDGSFVMHDVDEEDKVHSLRHHSEKMAVAYGLLKVP 649

Query: 458 PGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            G  IR++KN+R+C DCHSA+KL+++V  R+I +RD   +HHF+DG CSC ++W
Sbjct: 650 VGKPIRVMKNLRVCGDCHSAIKLIAQVTGREIILRDANRFHHFKDGLCSCRDFW 703



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/351 (27%), Positives = 160/351 (45%), Gaps = 56/351 (15%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           ++ F+    +    I +++  G++  AR +FD+     V SWN+++ GY  N    E  K
Sbjct: 9   RSYFSSSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQK 68

Query: 64  LFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEA 123
           LFDKMP+RN +SWN ++ G V+ G + +A +VF++MP+R++VSW  ++ G+ Q G   EA
Sbjct: 69  LFDKMPERNTISWNGLVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEA 128

Query: 124 LALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDM 183
             LF  M     E N      +L    + G +D    ++  I  K    D +    +I  
Sbjct: 129 ELLFWRMP----EKNVVSWTVMLGGLIEDGRVDEARRLFDMIPVK----DVVASTNMIGG 180

Query: 184 YAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISY 243
               G +  A ++F     ++V A+TS I G AMN     A +LFE M  K    + +++
Sbjct: 181 LCSEGRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVMPDK----NEVTW 236

Query: 244 IAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP 303
            A+L          KG+                           R+G + EA     +MP
Sbjct: 237 TAML----------KGYT--------------------------RSGRINEAAELFKAMP 260

Query: 304 MKPDNVIWGTLLGACRVHRNAEMGQR--IGNMLIESDQNHDGRYILLSNIY 352
           +KP     G ++G      N E+G+   + + + E D   DG +  L  IY
Sbjct: 261 VKPVAACNGMIMG---FGLNGEVGKARWVFDQMKEKD---DGTWSALIKIY 305



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 82/164 (50%), Gaps = 12/164 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +V++ F  D++V + LI  Y  CG +   + VFD     D+V WNS+I GY ++G   + 
Sbjct: 356 LVRSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKA 415

Query: 62  LKLFDKM----PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLIS 112
           L++F +M       +++++  +L      G V +   +F  M  +  V      +  ++ 
Sbjct: 416 LEVFHEMFSSGAAPDEITFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQKTEHYACMVD 475

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALD 156
              + G+  EA+ L   ++++ +E ++ +  +LLSAC     LD
Sbjct: 476 LLGRAGKLNEAMNL---IENMPVEADAIVWGALLSACRTHKNLD 516


>gi|125554650|gb|EAZ00256.1| hypothetical protein OsI_22267 [Oryza sativa Indica Group]
          Length = 602

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 188/438 (42%), Positives = 285/438 (65%)

Query: 74  VSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL 133
           VSW +++GGL R G VDDA  VF+ MP R+LVSW  +ISG+ +  R  +AL +F EM++L
Sbjct: 165 VSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMRAL 224

Query: 134 DLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLA 193
            +E N  +  S L AC   GAL  G  +Y ++++  I++D+ L  A++DMY KCG +D A
Sbjct: 225 GVEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKCGCVDEA 284

Query: 194 MQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL 253
            +VF S   + ++ +   I G A++G   +A ELF  M++ G++PD ++ + VL+AC+H 
Sbjct: 285 WRVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLTACAHA 344

Query: 254 GWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGT 313
           G V +G  Y + +   HGI+P+ +HY CMVDL GRAG L+EA+  I  MPM PD  + G 
Sbjct: 345 GEVSEGRRYLNHIVSRHGIEPKGEHYGCMVDLFGRAGQLDEAKKVIDEMPMDPDLAVLGA 404

Query: 314 LLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKI 373
           LLGAC++H + ++G+ IG  +I+ D ++ GRY+LL+N+     + +   +VR+ M +R +
Sbjct: 405 LLGACKIHGDVDLGEAIGWRVIDLDPDNSGRYVLLANLLAGAGRWDEVGKVRRLMDERNV 464

Query: 374 KRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEE 433
            +  G S+IE+DG   EF  G+  H + +EIY    ++V +I+  GY  +T   + D+ E
Sbjct: 465 SKEAGRSVIEVDGEACEFRCGNLRHPQAREIYAMAVDMVSRIRAEGYVPDTGEALHDVAE 524

Query: 434 EEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRD 493
           E+KE  +  HSEKLA+AFGL+  +P   +RI KN+R+C DCH A K VS+VF R+I +RD
Sbjct: 525 EDKEAALLCHSEKLAIAFGLLRARPRETLRITKNLRVCRDCHEATKYVSRVFGREIVVRD 584

Query: 494 RKHYHHFEDGSCSCLEYW 511
           R  +HHF+DG CSC +YW
Sbjct: 585 RSRFHHFKDGMCSCKDYW 602



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 108/230 (46%), Gaps = 40/230 (17%)

Query: 8   AYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDK 67
           A DV    +++      G V DAR VFD     ++VSWNSMI+GYV+    L+ L++FD+
Sbjct: 161 ALDVVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDE 220

Query: 68  MPQ--------------------------RNDVSW-------------NSILGGLVRFGS 88
           M                            R    W              +++    + G 
Sbjct: 221 MRALGVEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKCGC 280

Query: 89  VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148
           VD+A RVF+ +P R L +W  +I GFA +GR  +AL LF +M++  + P+   L+++L+A
Sbjct: 281 VDEAWRVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLTA 340

Query: 149 CAQLGALDYGNWVYSYI-QKKCIKLDSILCAALIDMYAKCGSIDLAMQVF 197
           CA  G +  G    ++I  +  I+        ++D++ + G +D A +V 
Sbjct: 341 CAHAGEVSEGRRYLNHIVSRHGIEPKGEHYGCMVDLFGRAGQLDEAKKVI 390



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 12/169 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V ++    D  +  +++  Y  CG V +A  VFD      + +WN MI G+  +G   + 
Sbjct: 256 VEQSGIEVDAKLATAVVDMYCKCGCVDEAWRVFDSLPARGLTTWNCMIGGFAVHGRCDDA 315

Query: 62  LKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLIS 112
           L+LF +M       +DV+  ++L      G V +  R  N +  R  +      +  ++ 
Sbjct: 316 LELFHQMEAAGVAPDDVTLLNVLTACAHAGEVSEGRRYLNHIVSRHGIEPKGEHYGCMVD 375

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161
            F + G+  EA  +  EM    ++P+ A+L +LL AC   G +D G  +
Sbjct: 376 LFGRAGQLDEAKKVIDEMP---MDPDLAVLGALLGACKIHGDVDLGEAI 421


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/507 (39%), Positives = 313/507 (61%), Gaps = 16/507 (3%)

Query: 16  SLIQFYSVCGRVRDARWV-----------FDESDDLDVVSWNSMINGYVRNGEILEGLKL 64
           S++   S C ++R+  W            F+  D++     N++I+ Y++        ++
Sbjct: 339 SMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNI----CNALIDMYMKCHRQDTAFRI 394

Query: 65  FDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEAL 124
           FD+M  +  V+WNSI+ G V  G VD A   F  MP++++VSW  +ISG  Q    +EA+
Sbjct: 395 FDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAI 454

Query: 125 ALFREMQSLD-LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDM 183
            +F  MQS + +  +   ++S+ SAC  LGALD   W+Y YI+K  I+LD  L   L+DM
Sbjct: 455 EVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDM 514

Query: 184 YAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISY 243
           +++CG  + AM +F+S  ++DVSA+T+AI  +AM G++  A ELF++M  +G+ PD +++
Sbjct: 515 FSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAF 574

Query: 244 IAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP 303
           +  L+ACSH G V++G   F+SM  +HG+ PE  HY CMVDLLGRAGLLEEA   I  MP
Sbjct: 575 VGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMP 634

Query: 304 MKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEE 363
           M+P++VIW +LL ACRV  N EM       +        G Y+LLSN+Y    +  +  +
Sbjct: 635 MEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAK 694

Query: 364 VRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVE 423
           VR +M+++ +++ PG S I++ G  HEF +GD SH +   I    +E+ ++  + G+  +
Sbjct: 695 VRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPD 754

Query: 424 TRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSK 483
             +V+ D++E+EK  ++  HSEKLA+A+GLI +  G+ IRIVKN+R+CSDCHS  K  SK
Sbjct: 755 LSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASK 814

Query: 484 VFKRKISIRDRKHYHHFEDGSCSCLEY 510
           V+ R+I +RD   +H+   G CSC ++
Sbjct: 815 VYNREIILRDNNRFHYIRQGKCSCGDF 841



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 112/417 (26%), Positives = 187/417 (44%), Gaps = 78/417 (18%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++VK  +A D+FV+NSL+ FY+ CG +  AR VFDE  + +VVSW SMI GY R     +
Sbjct: 159 LIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKD 218

Query: 61  GLKLFDKMPQRNDVSWNSI------------------------------------LGGLV 84
            + LF +M +  +V+ NS+                                    +  LV
Sbjct: 219 AVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALV 278

Query: 85  ----RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
               +  ++D A R+F++    +L     + S + + G  +EAL +F  M    + P+  
Sbjct: 279 DMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRI 338

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
            ++S +S+C+QL  + +G   + Y+ +   +    +C ALIDMY KC   D A ++F   
Sbjct: 339 SMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRM 398

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK-------------------------- 234
            +K V  + S + G   NG    A+E FE M  K                          
Sbjct: 399 SNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFC 458

Query: 235 ------GISPDSISYIAVLSACSHLGWVE--KGFYYFHSMFDVHGIKPELDHYACMVDLL 286
                 G++ D ++ +++ SAC HLG ++  K  YY+    + +GI+ ++     +VD+ 
Sbjct: 459 SMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYY---IEKNGIQLDVRLGTTLVDMF 515

Query: 287 GRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDG 343
            R G  E A +   S+  + D   W   +GA  +  NAE    + + +IE     DG
Sbjct: 516 SRCGDPESAMSIFNSLTNR-DVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDG 571



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 81/262 (30%), Positives = 145/262 (55%), Gaps = 10/262 (3%)

Query: 2   VVKNSFAYDV-FVKNSLIQFYSVCGRVRDARWVF----DESDDLDVVSWNSMINGYVRNG 56
           V +NS +Y   F+ NSLI+ Y+  G   +A  +F    +     D  ++   ++   ++ 
Sbjct: 89  VFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSR 148

Query: 57  EILEGLK---LFDKMPQRNDV-SWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLIS 112
               G++   L  KM    D+   NS++      G +D A +VF++M +R++VSW  +I 
Sbjct: 149 AKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMIC 208

Query: 113 GFAQNGRPKEALALF-REMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK 171
           G+A+    K+A+ LF R ++  ++ PNS  +V ++SACA+L  L+ G  VY++I+   I+
Sbjct: 209 GYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIE 268

Query: 172 LDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM 231
           ++ ++ +AL+DMY KC +ID+A ++F  YG  ++    +        G + EA  +F  M
Sbjct: 269 VNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLM 328

Query: 232 KSKGISPDSISYIAVLSACSHL 253
              G+ PD IS ++ +S+CS L
Sbjct: 329 MDSGVRPDRISMLSAISSCSQL 350



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 75/174 (43%), Gaps = 12/174 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           + KN    DV +  +L+  +S CG    A  +F+   + DV +W + I      G     
Sbjct: 496 IEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERA 555

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLIS 112
           ++LFD M ++    + V++   L      G V     +F  M K   VS     +  ++ 
Sbjct: 556 IELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVD 615

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQ 166
              + G  +EA+ L  +M    +EPN  I  SLL+AC   G ++   +    IQ
Sbjct: 616 LLGRAGLLEEAVQLIEDMP---MEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQ 666


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/550 (36%), Positives = 323/550 (58%), Gaps = 39/550 (7%)

Query: 1    MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
            +++++    DV + N+LI  Y  CG ++DA  VF      +V+SW +MI G+   GE  +
Sbjct: 612  LIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRK 671

Query: 61   GLKLFDKM------PQRNDVS---------------------------------WNSILG 81
              +LF +M      P ++  S                                  N+++ 
Sbjct: 672  AFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALIS 731

Query: 82   GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
               + GS+ DA +VF++MP R ++SW  +I+G+AQNG    AL    +MQ   +  N   
Sbjct: 732  AYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFS 791

Query: 142  LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
             VS+L+AC+   AL+ G  V++ I K+ ++ D  + AALI MYAKCGS++ A +VF ++ 
Sbjct: 792  FVSILNACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFT 851

Query: 202  DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
            +K+V  + + I   A +G + +A + F  M  +GI PD  ++ ++LSAC+H G V +G  
Sbjct: 852  EKNVVTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGNR 911

Query: 262  YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
             F S+   HG+ P ++HY C+V LLGRAG  +EAE  I  MP  PD  +W TLLGACR+H
Sbjct: 912  IFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETLLGACRIH 971

Query: 322  RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
             N  + +   N  ++ +  +   Y+LLSN+Y    + ++  ++R+ M  R I++ PG S 
Sbjct: 972  GNVALAEHAANNALKLNARNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSW 1031

Query: 382  IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIG 441
            IE+D ++HEF+A DRSH +T EIY+  + +  +++  GY+ +T+ V+ ++++E +ET + 
Sbjct: 1032 IEVDNIIHEFIAADRSHPETAEIYEELKRLSLEMERAGYSPDTQYVLHNLDKEHQETSLC 1091

Query: 442  YHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
             HSE+LA+A+GL+ T PG+ IRI KN+RIC DCH+A K +SK+  R+I  RD   +H F+
Sbjct: 1092 THSERLAIAYGLLKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHTFK 1151

Query: 502  DGSCSCLEYW 511
            +G CSC ++W
Sbjct: 1152 NGKCSCEDFW 1161



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 173/359 (48%), Gaps = 41/359 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++++    +  + N+L+  Y  CG + +A+ VF+ +   D++SWNSMI G+ ++G     
Sbjct: 512 ILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAA 571

Query: 62  LKLFDKMPQR----NDVSWNSILGG----------------------------------- 82
            KLF +M +     + +++ S+L G                                   
Sbjct: 572 YKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINM 631

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
            +R GS+ DA  VF+ +  R+++SW  +I GFA  G  ++A  LF +MQ+   +P  +  
Sbjct: 632 YIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTF 691

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S+L AC     LD G  V ++I     +LD+ +  ALI  Y+K GS+  A +VF    +
Sbjct: 692 SSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMPN 751

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           +D+ ++   I G A NG    A +    M+ +G+  +  S++++L+ACS    +E+G   
Sbjct: 752 RDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEG-KR 810

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            H+      ++ ++   A ++ +  + G LEEA+    +   K + V W  ++ A   H
Sbjct: 811 VHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEK-NVVTWNAMINAYAQH 868



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 96/357 (26%), Positives = 165/357 (46%), Gaps = 43/357 (12%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + V      D+ V  +L   +  CG V  A+   +   D DVV +N++I    ++G   E
Sbjct: 309 LAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEE 368

Query: 61  GLKLFDKM--------------------------------------PQRNDVS-WNSILG 81
             + + +M                                         +DV   NS++ 
Sbjct: 369 AFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLIS 428

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              R G +  A  +FN MPKR L+SW  +I+G+A+     EA+ L+++MQS  ++P    
Sbjct: 429 MYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVT 488

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
            + LLSAC    A   G  ++  I +  IK +  L  AL++MY +CGSI  A  VF    
Sbjct: 489 FLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTR 548

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
            +D+ ++ S I G A +G    A++LF  MK +G+ PD I++ +VL  C +   +E G  
Sbjct: 549 ARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELG-R 607

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVI-WGTLLGA 317
             H +    G++ +++    ++++  R G L++A     S  ++  NV+ W  ++G 
Sbjct: 608 QIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHS--LRHRNVMSWTAMIGG 662



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 157/355 (44%), Gaps = 41/355 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +V+     D+F+ N LI  Y  C  V DA  VF +    DV+SWNS+I+ Y + G   + 
Sbjct: 108 MVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKA 167

Query: 62  LKLFDKMP---------------------------------------QRNDVSWNSILGG 82
            +LF++M                                        QR+    NS+L  
Sbjct: 168 FQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNM 227

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             +   +  A +VF+ + +R +VS+  ++  +AQ    +E + LF +M S  + P+    
Sbjct: 228 YGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTY 287

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           ++LL A      LD G  ++     + +  D  +  AL  M+ +CG +  A Q   ++ D
Sbjct: 288 INLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFAD 347

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           +DV  Y + I  LA +GH  EAFE +  M+S G+  +  +Y++VL+ACS    +  G   
Sbjct: 348 RDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAG-EL 406

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
            HS     G   ++     ++ +  R G L  A     +MP K D + W  ++  
Sbjct: 407 IHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMP-KRDLISWNAIIAG 460



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 105/448 (23%), Positives = 195/448 (43%), Gaps = 79/448 (17%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++  +  D  V+NSL+  Y  C  +  AR VF      DVVS+N+M+  Y +   + E 
Sbjct: 209 IIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEEC 268

Query: 62  LKLFDKM------PQR--------------------------------NDVSWNSILGGL 83
           + LF +M      P +                                +D+   + L  +
Sbjct: 269 IGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATM 328

Query: 84  -VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
            VR G V  A +       R +V +  LI+  AQ+G  +EA   + +M+S  +  N    
Sbjct: 329 FVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTY 388

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           +S+L+AC+   AL  G  ++S+I +     D  +  +LI MYA+CG +  A ++F++   
Sbjct: 389 LSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPK 448

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           +D+ ++ + I G A      EA +L++ M+S+G+ P  ++++ +LSAC++      G   
Sbjct: 449 RDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDG-KM 507

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-------------------- 302
            H      GIK        ++++  R G + EA+N                         
Sbjct: 508 IHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGS 567

Query: 303 --------------PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD---GRY 345
                          ++PD + + ++L  C+     E+G++I  ++IES    D   G  
Sbjct: 568 YEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNA 627

Query: 346 ILLSNIYVETLKGENAEEVRKTMRKRKI 373
           ++  N+Y+     ++A EV  ++R R +
Sbjct: 628 LI--NMYIRCGSLQDAYEVFHSLRHRNV 653



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 156/335 (46%), Gaps = 42/335 (12%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136
           N ++   V+  SV DA +VF +MP+R ++SW  LIS +AQ G  K+A  LF EMQ+    
Sbjct: 121 NLLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFI 180

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
           P+    +S+L+AC     L+YG  ++S I +   + D  +  +L++MY KC  +  A QV
Sbjct: 181 PSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQV 240

Query: 197 FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWV 256
           F     +DV +Y + +   A   +  E   LF  M S+GI PD ++YI +L A +    +
Sbjct: 241 FSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSML 300

Query: 257 EKG------------------FYYFHSMF----DVHGIKPELDHYA--------CMVDLL 286
           ++G                       +MF    DV G K  L+ +A         ++  L
Sbjct: 301 DEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAAL 360

Query: 287 GRAGLLEEAENFIASMPMKPDNVI-----WGTLLGACRVHRNAEMGQRIGNMLIESDQNH 341
            + G  EEA  F     M+ D V+     + ++L AC   +    G+ I + + E   + 
Sbjct: 361 AQHGHYEEA--FEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSS 418

Query: 342 D---GRYILLSNIYVETLKGENAEEVRKTMRKRKI 373
           D   G  ++  ++Y        A E+  TM KR +
Sbjct: 419 DVQIGNSLI--SMYARCGDLPRARELFNTMPKRDL 451



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 108/259 (41%), Gaps = 33/259 (12%)

Query: 119 RPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCA 178
           R  E   L    Q    E N A  V L+  C +  +L     +++ + +  +  D  L  
Sbjct: 62  RGSEREDLSNAYQPRPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSN 121

Query: 179 ALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISP 238
            LI+MY KC S+  A QVF     +DV ++ S I   A  G   +AF+LFE M++ G  P
Sbjct: 122 LLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIP 181

Query: 239 DSISYIAVLSACS-----------HLGWVEKGFY----YFHSMFDVHG------------ 271
             I+YI++L+AC            H   +E G+       +S+ +++G            
Sbjct: 182 SKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVF 241

Query: 272 ---IKPELDHYACMVDLLGRAGLLEEAENFIASMP---MKPDNVIWGTLLGACRVHRNAE 325
               + ++  Y  M+ L  +   +EE       M    + PD V +  LL A       +
Sbjct: 242 SGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLD 301

Query: 326 MGQRIGNMLIESDQNHDGR 344
            G+RI  + +    N D R
Sbjct: 302 EGKRIHKLAVNEGLNSDIR 320


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 220/578 (38%), Positives = 321/578 (55%), Gaps = 76/578 (13%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D FV+  L+  Y+ CGR+  AR VFDE    DVV+WN+MI  Y R G + E  KLF++M 
Sbjct: 148 DPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYCRFGLLDEAFKLFEEMK 207

Query: 70  Q----------------------------------RNDVSWNS-ILGGLVRF----GSVD 90
                                               NDV  ++ +L  LV      G +D
Sbjct: 208 DSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIENDVRMDTHLLTALVTMYAGAGCMD 267

Query: 91  DACRVFNQMPKRSL-------------------------------VSWVVLISGFAQNGR 119
            A   F +M  R+L                               V W  +IS +A++  
Sbjct: 268 MAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVCWTTMISAYAESDH 327

Query: 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
           P+EAL +F EM    ++P+   ++S++SAC  LG LD   WV+ Y     ++    +  A
Sbjct: 328 PQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKAKWVHRYTHLNGLESVLPIDNA 387

Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
           LI+MYAKCG +D A  VF     ++V +++S I   AM+G + ++  LF  MK + + P+
Sbjct: 388 LINMYAKCGGLDAARDVFEKMPTRNVVSWSSMINAFAMHGEASDSLSLFAQMKQENVEPN 447

Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI 299
            ++++ VL  CSH G VE+G   F SM D + I P+++HY CMVDL GRA LL EA   I
Sbjct: 448 EVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKIEHYGCMVDLFGRANLLREALEVI 507

Query: 300 ASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGE 359
            SMPM P+ VIWG+L+ ACRVH   E+G+     +++ + +HDG  +L+SNIY    + +
Sbjct: 508 ESMPMAPNVVIWGSLMSACRVHGELELGELAAKRILKLEPDHDGALVLMSNIYAREYRWD 567

Query: 360 NAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYG 419
               +R  M K+K+ +  G S I+L+G  HEFL GD+ H+++ EIY    E+V K+K  G
Sbjct: 568 YVRIIRWIMEKKKVFKEKGLSRIDLNGKSHEFLIGDKRHKQSNEIYTKLYEVVSKLKLAG 627

Query: 420 YNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICT----KPGS--VIRIVKNIRICSD 473
           Y  +  SV+ D+EEEEK+ ++ +HSEKLAL FGL+      + GS  VIRIVKN+R+C D
Sbjct: 628 YVPDGGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNKEKEEEKGSCGVIRIVKNLRVCED 687

Query: 474 CHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           CH+  KLVSKV++ +I +RDR  +H ++DG CSC +YW
Sbjct: 688 CHAFFKLVSKVYELEIIVRDRTRFHRYKDGLCSCRDYW 725



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 165/351 (47%), Gaps = 41/351 (11%)

Query: 13  VKNSLIQFYSVCGRVRDARWVFDE----SDDLDVVSWNSMINGYVRNGEILEGLKLFDKM 68
           V NSL++  S  G  R     +          D +S+  ++    +   + EG++L    
Sbjct: 81  VFNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAVSKVSALFEGMELHGFA 140

Query: 69  PQRNDVSWNSILGGLVRF----GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEAL 124
            +   +S   +  GL+      G ++ A  VF++M +R +V+W  +I  + + G   EA 
Sbjct: 141 FKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYCRFGLLDEAF 200

Query: 125 ALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMY 184
            LF EM+  ++ P+  IL +++SAC + G + Y   +Y ++ +  +++D+ L  AL+ MY
Sbjct: 201 KLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIENDVRMDTHLLTALVTMY 260

Query: 185 AKCGSIDLAMQ-------------------------------VFHSYGDKDVSAYTSAIF 213
           A  G +D+AM+                               +F     KD+  +T+ I 
Sbjct: 261 AGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVCWTTMIS 320

Query: 214 GLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIK 273
             A + H  EA  +FE M   GI PD ++ ++V+SAC +LG ++K   + H    ++G++
Sbjct: 321 AYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKA-KWVHRYTHLNGLE 379

Query: 274 PELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
             L     ++++  + G L+ A +    MP + + V W +++ A  +H  A
Sbjct: 380 SVLPIDNALINMYAKCGGLDAARDVFEKMPTR-NVVSWSSMINAFAMHGEA 429


>gi|115467246|ref|NP_001057222.1| Os06g0231400 [Oryza sativa Japonica Group]
 gi|51535413|dbj|BAD37283.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595262|dbj|BAF19136.1| Os06g0231400 [Oryza sativa Japonica Group]
 gi|125596589|gb|EAZ36369.1| hypothetical protein OsJ_20697 [Oryza sativa Japonica Group]
          Length = 602

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 188/438 (42%), Positives = 284/438 (64%)

Query: 74  VSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL 133
           VSW +++GGL R G VDDA  VF+ MP R+LVSW  +ISG+ +  R  +AL +F EM++L
Sbjct: 165 VSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMRAL 224

Query: 134 DLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLA 193
            +E N  +  S L AC   GAL  G  +Y ++++  I++D+ L  A++DMY KCG +D A
Sbjct: 225 GVEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKCGCVDEA 284

Query: 194 MQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL 253
             VF S   + ++ +   I G A++G   +A ELF  M++ G++PD ++ + VL+AC+H 
Sbjct: 285 WGVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLTACAHA 344

Query: 254 GWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGT 313
           G V +G  Y + +   HGI+P+ +HY CMVDL GRAG L+EA+  I  MPM PD  + G 
Sbjct: 345 GEVSEGRRYLNHIVSRHGIEPKGEHYGCMVDLFGRAGQLDEAKKVIDEMPMDPDLAVLGA 404

Query: 314 LLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKI 373
           LLGAC++H + ++G+ IG  +I+ D ++ GRY+LL+N+     + +   +VR+ M +R +
Sbjct: 405 LLGACKIHGDVDLGEAIGWRVIDLDPDNSGRYVLLANLLAGAGRWDEVGKVRRLMDERNV 464

Query: 374 KRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEE 433
            +  G S+IE+DG   EF  G+  H + +EIY    ++V +I+  GY  +T   + D+ E
Sbjct: 465 SKEAGRSVIEVDGEACEFRCGNLRHPQAREIYAMAVDMVSRIRAEGYVPDTGEALHDVAE 524

Query: 434 EEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRD 493
           E+KE  +  HSEKLA+AFGL+  +P   +RI KN+R+C DCH A K VS+VF R+I +RD
Sbjct: 525 EDKEAALLCHSEKLAIAFGLLRARPRETLRITKNLRVCRDCHEATKYVSRVFGREIVVRD 584

Query: 494 RKHYHHFEDGSCSCLEYW 511
           R  +HHF+DG CSC +YW
Sbjct: 585 RSRFHHFKDGMCSCKDYW 602



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 107/230 (46%), Gaps = 40/230 (17%)

Query: 8   AYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDK 67
           A DV    +++      G V DAR VFD     ++VSWNSMI+GYV+    L+ L++FD+
Sbjct: 161 ALDVVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDE 220

Query: 68  MPQ--------------------------RNDVSW-------------NSILGGLVRFGS 88
           M                            R    W              +++    + G 
Sbjct: 221 MRALGVEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKCGC 280

Query: 89  VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148
           VD+A  VF+ +P R L +W  +I GFA +GR  +AL LF +M++  + P+   L+++L+A
Sbjct: 281 VDEAWGVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLTA 340

Query: 149 CAQLGALDYGNWVYSYI-QKKCIKLDSILCAALIDMYAKCGSIDLAMQVF 197
           CA  G +  G    ++I  +  I+        ++D++ + G +D A +V 
Sbjct: 341 CAHAGEVSEGRRYLNHIVSRHGIEPKGEHYGCMVDLFGRAGQLDEAKKVI 390



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 12/169 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V ++    D  +  +++  Y  CG V +A  VFD      + +WN MI G+  +G   + 
Sbjct: 256 VEQSGIEVDAKLATAVVDMYCKCGCVDEAWGVFDSLPARGLTTWNCMIGGFAVHGRCDDA 315

Query: 62  LKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLIS 112
           L+LF +M       +DV+  ++L      G V +  R  N +  R  +      +  ++ 
Sbjct: 316 LELFHQMEAAGVAPDDVTLLNVLTACAHAGEVSEGRRYLNHIVSRHGIEPKGEHYGCMVD 375

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161
            F + G+  EA  +  EM    ++P+ A+L +LL AC   G +D G  +
Sbjct: 376 LFGRAGQLDEAKKVIDEMP---MDPDLAVLGALLGACKIHGDVDLGEAI 421


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/552 (36%), Positives = 327/552 (59%), Gaps = 43/552 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           VK+    ++FV N++I  Y   G + + R VFD     D+V+WNS+I+G+ + G++   +
Sbjct: 197 VKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAV 256

Query: 63  KLFDKM-------------------PQRNDV-------------SW--------NSILGG 82
           ++F  M                    Q  D+              W        N+I+  
Sbjct: 257 EMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDM 316

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD-LEPNSAI 141
             +   ++ A R+F+ MP R  VSW  LI+G+ QNG   EA+ ++  MQ  + L+P    
Sbjct: 317 YAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGT 376

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
            VS+L A + LGAL  G  +++   K  + LD  +   +ID+YAKCG +D AM +F    
Sbjct: 377 FVSVLPAYSHLGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTP 436

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
            +    + + I G+ ++GH  +A  LF  M+ +GISPD ++++++L+ACSH G V++G  
Sbjct: 437 RRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRN 496

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           +F+ M   +GIKP   HYACMVD+ GRAG L++A +FI +MP+KPD+ IWG LLGACR+H
Sbjct: 497 FFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALLGACRIH 556

Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
            N EMG+     L E D  + G Y+L+SN+Y +  K +  +EVR  +R++ +++ PG S 
Sbjct: 557 GNVEMGKVASQNLFELDPKNVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSS 616

Query: 382 IELDGVVHEFLAGDRS--HEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETV 439
           IE+   V+ F +G++   H + +EI +   +++ KI++ GY  +   V+ D+EE+EKE +
Sbjct: 617 IEVKRSVNVFYSGNQMNIHPQHEEIQRELLDLLAKIRSLGYVPDYSFVLQDVEEDEKEQI 676

Query: 440 IGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHH 499
           +  HSE+LA+AFG+I T P + + I KN+R+C DCH+A K +SK+ +R+I +RD   +HH
Sbjct: 677 LNNHSERLAIAFGIINTPPRTPLHIYKNLRVCGDCHNATKYISKITEREIIVRDSNRFHH 736

Query: 500 FEDGSCSCLEYW 511
           F+DG CSC ++W
Sbjct: 737 FKDGYCSCGDFW 748



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 169/353 (47%), Gaps = 43/353 (12%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D F   +L+  Y   GRVRDA   FDE    DV +WN+M++G  RN    E + LF +M 
Sbjct: 103 DAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMV 162

Query: 70  QR----NDVSWNSILGGLV-----------------------------------RFGSVD 90
                 + V+ +S+L   V                                   + G ++
Sbjct: 163 MEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLE 222

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           +  +VF+ M  R LV+W  +ISG  Q G+   A+ +F  M+   + P+   L+SL SA A
Sbjct: 223 EVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIA 282

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCA-ALIDMYAKCGSIDLAMQVFHSYGDKDVSAYT 209
           Q G +  G  V+ Y+ ++   +  I+   A++DMYAK   I+ A ++F S   +D  ++ 
Sbjct: 283 QCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWN 342

Query: 210 SAIFGLAMNGHSIEAFELFENM-KSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD 268
           + I G   NG + EA  ++++M K +G+ P   ++++VL A SHLG +++G    H++  
Sbjct: 343 TLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQG-TRMHALSI 401

Query: 269 VHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
             G+  ++    C++DL  + G L+EA       P +     W  ++    VH
Sbjct: 402 KTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGP-WNAVISGVGVH 453


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/549 (39%), Positives = 311/549 (56%), Gaps = 40/549 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +  + FA D F+ NSLI  Y  CG V +AR VFDE    D+VSW S+I GY +N    E 
Sbjct: 77  LASSRFAGDAFLDNSLIHLYCKCGSVLEARKVFDEMRRKDMVSWTSLIAGYAQNDMPEEA 136

Query: 62  LKLFDKMPQ----RNDVSWNSILGG----------------------------------- 82
           + L   M +     N  ++ S+L                                     
Sbjct: 137 IGLLPGMLKGRFKPNGFTFASLLKAAGAHADSGIGRQIHALAVKCDWHEDVYVGSALLDM 196

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             R G +D A  VF+++  ++ VSW  LISGFA+ G  + AL  F EM     E      
Sbjct: 197 YARCGMMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMTFAEMLRNGFEATHFTY 256

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S+ S+ A+LGAL+ G WV++++ K   K+ +     L+DMYAK GS+  A +VF    D
Sbjct: 257 SSVFSSIARLGALEQGKWVHAHMIKSRQKMTAFAGNTLLDMYAKSGSMIDARKVFDRVDD 316

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           KD+  + + +   A  G   EA   FE M+  GI  + ++++ +L+ACSH G V++G  Y
Sbjct: 317 KDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCILTACSHGGLVKEGKRY 376

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F  M   + ++PE+DH+  +V LLGRAGLL  A  FI  MP++P   +WG LL ACR+H+
Sbjct: 377 F-EMMKEYDLEPEIDHFVTVVALLGRAGLLNFALVFIFKMPIEPTAAVWGALLAACRMHK 435

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           NA++GQ   + + E D +  G  +LL NIY  T + + A  VR+ M+   +K+ P CS +
Sbjct: 436 NAKVGQFAADHVFELDPDDSGPPVLLYNIYASTGQWDAAARVRRIMKTTGVKKEPACSWV 495

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E++  VH F+A D +H + +EIY+ W +I KKI+  GY  +   V+  ++++E+E  + Y
Sbjct: 496 EMENSVHMFVANDDTHPRAEEIYKMWGQISKKIRKEGYVPDMDYVLLRVDDQEREANLQY 555

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSEKLALAF LI    G+ IRI+KNIRIC DCHSA K +SKVF R+I +RD   +HHF +
Sbjct: 556 HSEKLALAFALIEMPAGATIRIMKNIRICGDCHSAFKYISKVFGREIVVRDTNRFHHFSN 615

Query: 503 GSCSCLEYW 511
           GSCSC +YW
Sbjct: 616 GSCSCADYW 624



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 110/233 (47%), Gaps = 39/233 (16%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + VK  +  DV+V ++L+  Y+ CG +  A  VFD+ D  + VSWN++I+G+ R G+   
Sbjct: 177 LAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGFARKGDGET 236

Query: 61  GLKLFDKMPQR----NDVSWNSILGGLVRFGSVD-------------------------- 90
            L  F +M +        +++S+   + R G+++                          
Sbjct: 237 ALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTAFAGNTLLD 296

Query: 91  ---------DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
                    DA +VF+++  + LV+W  +++ FAQ G  KEA++ F EM+   +  N   
Sbjct: 297 MYAKSGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQVT 356

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
            + +L+AC+  G +  G   +  +++  ++ +      ++ +  + G ++ A+
Sbjct: 357 FLCILTACSHGGLVKEGKRYFEMMKEYDLEPEIDHFVTVVALLGRAGLLNFAL 409



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 103/231 (44%), Gaps = 24/231 (10%)

Query: 100 PKRSLVSWVVLI------SGFAQNGRPKEALALFREMQSLD---LEPNSAILVSLLSACA 150
           P + L ++++L       +  A N  P  A A+ R++  LD   L P   +  + ++ACA
Sbjct: 4   PHKLLPNYLLLYRHTRPYTSTAANPVPA-ASAVLRDLDLLDAGELAPTPRVYHTFITACA 62

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
           Q   L+    V++++       D+ L  +LI +Y KCGS+  A +VF     KD+ ++TS
Sbjct: 63  QSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKVFDEMRRKDMVSWTS 122

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I G A N    EA  L   M      P+  ++ ++L A       + G         +H
Sbjct: 123 LIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAG--AHADSGIGR-----QIH 175

Query: 271 GIKPELDHY------ACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
            +  + D +      + ++D+  R G+++ A      +  K + V W  L+
Sbjct: 176 ALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSK-NGVSWNALI 225


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/550 (37%), Positives = 323/550 (58%), Gaps = 42/550 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K  F  DVFV+N L+  Y+ CG +  A+ VFD      +VSW S+I+GY +NG+ +E 
Sbjct: 180 IIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEA 239

Query: 62  LKLFDKMPQRNDVS--WNSILGGLVRFGSVDD---------------------------- 91
           L++F +M + N V   W +++  L  +  VDD                            
Sbjct: 240 LRMFSQM-RNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTA 298

Query: 92  ----------ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
                     A   F+QM   +++ W  +ISG+A+NG  +EA+ LF  M S +++P+S  
Sbjct: 299 FYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVT 358

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           + S + A AQ+G+L+   W+  Y+ K     D  +  +LIDMYAKCGS++ A +VF    
Sbjct: 359 VRSAVLASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNS 418

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
           DKDV  +++ I G  ++G   EA  L+  MK  G+ P+ +++I +L+AC+H G V++G+ 
Sbjct: 419 DKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNHSGLVKEGWE 478

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            FH M D   I P  +HY+C+VDLLGRAG L EA  FI  +P++P   +WG LL AC+++
Sbjct: 479 LFHCMKDFE-IVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPIEPGVSVWGALLSACKIY 537

Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
           R   +G+   N L   D  + G Y+ LSN+Y  +   +    VR  MR++ + +  G S+
Sbjct: 538 RCVTLGEYAANKLFSLDPYNTGHYVQLSNLYASSCLWDCVAHVRVLMREKGLNKDLGYSV 597

Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIG 441
           IE++G +  F  GD+SH   +EI+   + + +++K  G+   T SV+ D+  EEKE  + 
Sbjct: 598 IEINGKLQAFHVGDKSHPMAKEIFDELQRLERRLKEVGFVPYTESVLHDLNYEEKEENLS 657

Query: 442 YHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
           +HSE++A+A+GLI T PG+ +RI KN+R C +CHSA+KL+SK+ +R+I +RD   +HHF+
Sbjct: 658 FHSERIAVAYGLISTAPGTTLRITKNLRACVNCHSAIKLISKLVEREIIVRDANRFHHFK 717

Query: 502 DGSCSCLEYW 511
           DG CSC +YW
Sbjct: 718 DGLCSCGDYW 727



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 143/295 (48%), Gaps = 39/295 (13%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +V +   ++ F+   L+   S  G++  AR +FDE    DV  WN++I  Y RN    + 
Sbjct: 79  LVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNNMYRDT 138

Query: 62  LKLFDKM-------------------PQRNDVSWNSIL-GGLVRFGSVDD---------- 91
           ++++  M                    +  D   + I+ G ++++G   D          
Sbjct: 139 VEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQIIKYGFGSDVFVQNGLVAL 198

Query: 92  ---------ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
                    A  VF+ +  R++VSW  +ISG+AQNG+  EAL +F +M++  ++P+   L
Sbjct: 199 YAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIAL 258

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           VS+L A   +  L+ G  ++ ++ K  ++ +  L  +L   YAKCG + +A   F     
Sbjct: 259 VSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQMKT 318

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVE 257
            +V  + + I G A NGH+ EA  LF  M S+ I PDS++  + + A + +G +E
Sbjct: 319 TNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLE 373



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 136/293 (46%), Gaps = 15/293 (5%)

Query: 53  VRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLIS 112
           + N  ++ GL       Q N      ++ G    G +  A ++F++     +  W  +I 
Sbjct: 75  IHNRLVISGL-------QHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIR 127

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG--NWVYSYIQKKCI 170
            +++N   ++ + ++R M+   + P+      +L AC +L  LD+G    ++  I K   
Sbjct: 128 SYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTEL--LDFGLSCIIHGQIIKYGF 185

Query: 171 KLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFEN 230
             D  +   L+ +YAKCG I +A  VF     + + ++TS I G A NG ++EA  +F  
Sbjct: 186 GSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQ 245

Query: 231 MKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAG 290
           M++ G+ PD I+ +++L A + +  +E+G    H      G++ E      +     + G
Sbjct: 246 MRNNGVKPDWIALVSILRAYTDVDDLEQG-RSIHGFVIKMGLEDEPALLISLTAFYAKCG 304

Query: 291 LLEEAENFIASMPMKPDNVI-WGTLLGACRVHRNAEMGQRIGNMLIESDQNHD 342
           L+  A++F     MK  NVI W  ++     + +AE    + + +I  +   D
Sbjct: 305 LVTVAKSFFDQ--MKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPD 355


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/549 (38%), Positives = 319/549 (58%), Gaps = 39/549 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K     D FV   LI  YS CG ++DAR VFD     DV+ WNS+I+GY   G  +E 
Sbjct: 315 LMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEA 374

Query: 62  LKLFDKMPQR----NDVSWNSILGG--------------------------------LVR 85
           + LF  M +     N  + ++IL                                  L  
Sbjct: 375 MSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDS 434

Query: 86  FGS---VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
           +G    ++DA +VF   P   LV++  +I+ ++Q G  +EAL ++  MQ  D++P++ I 
Sbjct: 435 YGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIF 494

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            SL +ACA L A + G  ++ ++ K  +  D     +L++MYAKCGSID A  +F+    
Sbjct: 495 SSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISW 554

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           + + ++++ I GLA +GH  +A +LF  M   GI P+ I+ ++VLSAC+H G V +   +
Sbjct: 555 RGIVSWSAMIGGLAQHGHGRKALQLFYQMLKNGILPNHITLVSVLSACNHAGLVTEARRF 614

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F  M  + GI P  +HYACMVD+LGR G L+EA   +  MP +    +WG LLGA R+H+
Sbjct: 615 FGLMEKLFGITPTQEHYACMVDILGRVGRLDEAMVLVKEMPFQASAAVWGALLGAARIHK 674

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           N E+G+    ML+  +    G +ILL+NIY  T   +N  +VR++M+   +K+ PG S I
Sbjct: 675 NIELGRHAAEMLLTLEPEKSGTHILLANIYASTGMWDNVAKVRRSMKNSLVKKEPGMSWI 734

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           EL   V+ F+ GDRSH +++EIY   +++ +++ + GY     + + D+E+ EKE ++ +
Sbjct: 735 ELKDKVYTFIVGDRSHPRSKEIYVKLDDLRERLTSAGYVPMIETDLHDVEQIEKEQLLWH 794

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSEKLA+AFGLI T PG+ IR+ KN+R+C DCH+A K +SKV  R+I +RD   +HHF D
Sbjct: 795 HSEKLAVAFGLIATPPGAPIRVKKNLRVCIDCHTAFKFISKVASREIIVRDINRFHHFRD 854

Query: 503 GSCSCLEYW 511
           GSCSC +YW
Sbjct: 855 GSCSCGDYW 863



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 146/302 (48%), Gaps = 32/302 (10%)

Query: 18  IQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM----PQRND 73
           +  YS C   R AR +  +S + D+VSW+++I+GYV+NG   E L  + +M     + N+
Sbjct: 89  VNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNE 148

Query: 74  VSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL 133
            +++S+L G          C +   +                + G+    +AL  EM S 
Sbjct: 149 FTFSSVLKG----------CSLTRNL----------------ELGKQIHRVALVTEMIST 182

Query: 134 DLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLA 193
            + PN   L ++L+ACA L   +YG  V+ Y+ K     D     AL+DMYAK G  + A
Sbjct: 183 GISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAA 242

Query: 194 MQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL 253
           + VF+     D+ ++ + I G  ++  +  A +L   M S  ++P   +  + L AC+ +
Sbjct: 243 IAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAI 302

Query: 254 GWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGT 313
           G V+ G    HS      ++P+      ++D+  + GLL++A      MP K D ++W +
Sbjct: 303 GLVKLG-RQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXK-DVIVWNS 360

Query: 314 LL 315
           ++
Sbjct: 361 II 362



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 134/289 (46%), Gaps = 33/289 (11%)

Query: 75  SWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD 134
           S N++L    + G  + A  VF ++PK  +VSW  +I+G   + +   AL L  +M S  
Sbjct: 225 SANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYR 284

Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
           + P+   L S L ACA +G +  G  ++S + K  ++ DS +   LIDMY+KCG +  A 
Sbjct: 285 VAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDAR 344

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS--- 251
            VF     KDV  + S I G +  G+ IEA  LF NM  +G+  +  +   +L + +   
Sbjct: 345 MVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQ 404

Query: 252 --------HLGWVEKGF----YYFHSMFDVHG-------------IKP--ELDHYACMVD 284
                   H   ++ G+    Y  +S+ D +G             + P  +L  Y  M+ 
Sbjct: 405 ANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMIT 464

Query: 285 LLGRAGLLEEAENFIASMP---MKPDNVIWGTLLGACRVHRNAEMGQRI 330
              + GL EEA      M    +KPD  I+ +L  AC      E G++I
Sbjct: 465 AYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQI 513


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 192/466 (41%), Positives = 291/466 (62%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N++I  Y +N ++ E  K+F  MP RN ++WN+IL G V  G +++A   F +MP ++L+
Sbjct: 332 NALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLL 391

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           +  V+ISG AQNG   E L LF++M+    EP        L+AC+ LGAL+ G  +++ +
Sbjct: 392 TLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQL 451

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
                +    +  A+I MYAKCG ++ A  VF +    D+ ++ S I  L  +GH ++A 
Sbjct: 452 VHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAI 511

Query: 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL 285
           ELF+ M  +G+ PD I+++ VL+ACSH G VEKG +YF+SM + +GI P  DHYA MVDL
Sbjct: 512 ELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDL 571

Query: 286 LGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRY 345
             RAG+   A   I SMP KP   +W  LL  CR+H N ++G      L +    +DG Y
Sbjct: 572 FCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTY 631

Query: 346 ILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIY 405
           +LLSNIY +  +  +  +VRK MR + +++ P CS IE++  VH F+  D  H +   +Y
Sbjct: 632 VLLSNIYADVGRWNDVAKVRKLMRDQAVRKEPACSWIEVENKVHVFMVDDDVHPEVLSVY 691

Query: 406 QFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIV 465
           ++ E++  ++K  GY  +T+ V+ D+E E+KE  +  HSEKLA+ FG++   P + +R+ 
Sbjct: 692 RYLEQLGLEMKKLGYIPDTKFVLHDMEYEQKEHALSTHSEKLAVGFGIMKLPPDATVRVF 751

Query: 466 KNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           KNIRIC DCH+A K +SKV +R+I +RDRK +HHF++G CSC +YW
Sbjct: 752 KNIRICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDCSCRDYW 797



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 153/319 (47%), Gaps = 45/319 (14%)

Query: 46  NSMINGYVRNGE--------ILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFN 97
           N++++ YV+           ++   KLFD+MP+R++++W +++ G VR   ++ A  VF 
Sbjct: 188 NALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFE 247

Query: 98  QMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDY 157
            M +    +W  +ISG+   G  +EAL L R+M+ L ++ +     +++SACA +G+   
Sbjct: 248 AMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQM 307

Query: 158 GNWVYSYIQKKCIKLDSILCA----ALIDMYAKCGSIDLAMQVFHSYGDKDV-------S 206
           G  +++YI K  +  +   C     ALI +Y K   +D A ++F++   +++       S
Sbjct: 308 GKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILS 367

Query: 207 AYTSA------------------------IFGLAMNGHSIEAFELFENMKSKGISPDSIS 242
            Y +A                        I GLA NG   E  +LF+ M+  G  P   +
Sbjct: 368 GYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFA 427

Query: 243 YIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM 302
           +   L+ACS LG +E G    H+     G +  L     M+ +  + G++E AE+   +M
Sbjct: 428 FAGALTACSVLGALENG-RQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTM 486

Query: 303 PMKPDNVIWGTLLGACRVH 321
           P   D V W +++ A   H
Sbjct: 487 P-SVDLVSWNSMIAALGQH 504



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/319 (21%), Positives = 136/319 (42%), Gaps = 53/319 (16%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMP--KRS 103
           N ++  Y ++  ++   +LF+++P  + ++  +++      G+++    +FN  P   R 
Sbjct: 52  NRLLEMYCKSSNVVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRD 111

Query: 104 LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA----------CAQL- 152
            V +  +I+G+A NG    AL LFR M+  D  P+     S+LSA          C Q+ 
Sbjct: 112 SVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMH 171

Query: 153 -GALDYG---------NWVYSYIQKKCIKL--------------------DSILCAALID 182
              +  G         N + S   K+  +L                    D +    +I 
Sbjct: 172 CAVVKTGMGCVSSSVLNALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMIT 231

Query: 183 MYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSIS 242
            Y +   ++ A +VF +  +   +A+ + I G    G   EA  L   M+  GI  D I+
Sbjct: 232 GYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDIT 291

Query: 243 YIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYAC------MVDLLGRAGLLEEAE 296
           Y  ++SAC+++G  + G    H+    + + P  +H  C      ++ L  +   ++EA 
Sbjct: 292 YTTIISACANVGSFQMG-KQMHAYILKNELNP--NHSFCLSVSNALITLYCKNNKVDEAR 348

Query: 297 NFIASMPMKPDNVIWGTLL 315
               +MP++ + + W  +L
Sbjct: 349 KIFYAMPVR-NIITWNAIL 366



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 119/269 (44%), Gaps = 49/269 (18%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           ++   N+++  Y   GR+ +A+  F+E    ++++   MI+G  +NG   EGLKLF +M 
Sbjct: 358 NIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQM- 416

Query: 70  QRND------------VSWNSILGGL-----------------------------VRFGS 88
            R D            ++  S+LG L                              + G 
Sbjct: 417 -RLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGV 475

Query: 89  VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148
           V+ A  VF  MP   LVSW  +I+   Q+G   +A+ LF +M    + P+    +++L+A
Sbjct: 476 VEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTA 535

Query: 149 CAQLGALDYG-NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSA 207
           C+  G ++ G ++  S ++   I       A ++D++ + G    A  V  S   K  + 
Sbjct: 536 CSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAP 595

Query: 208 YTSAIF-GLAMNGH---SIEAFE-LFENM 231
              A+  G  ++G+    IEA E LF+ M
Sbjct: 596 VWEALLAGCRIHGNMDLGIEAAEQLFKLM 624


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 220/553 (39%), Positives = 322/553 (58%), Gaps = 44/553 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNG---EI 58
           ++ + F  D+ +KNS++  Y+ CG +  AR VFDE    DVV+W SMI GY ++G     
Sbjct: 117 LMNSKFRNDLVIKNSILFMYAKCGSLEIARQVFDEMCVKDVVTWTSMITGYSQDGYASSA 176

Query: 59  LEGLKLFDKM------P---------------------------------QRNDVSWNSI 79
              L LF +M      P                                 Q N    +S+
Sbjct: 177 TTALVLFLEMVRDGLRPNEFALSSLVKCCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSL 236

Query: 80  LGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS 139
           +    R G + ++  VF+++  ++ VSW  LISGFA+ G  +EAL LF +MQ        
Sbjct: 237 VDMYARCGELRESRLVFDELESKNEVSWNALISGFARKGEGEEALGLFVKMQREGFGATE 296

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
               +LL + +  G+L+ G W+++++ K   KL   +   L+ MYAK G+I  A +VF  
Sbjct: 297 FTYSALLCSSSTTGSLEQGKWLHAHMMKSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDR 356

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKS-KGISPDSISYIAVLSACSHLGWVEK 258
               DV +  S + G A +G   EA ELFE M     I P+ I++++VL+ACSH G +++
Sbjct: 357 LVKVDVVSCNSMLIGYAQHGLGKEAVELFEEMMLWVEIEPNDITFLSVLTACSHAGLLDE 416

Query: 259 GFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
           G YYF  M   +G++P+L HY  +VDL GRAGLL++A++FI  MP++P+  IWG LLGA 
Sbjct: 417 GLYYFELM-KKYGLEPKLSHYTTVVDLFGRAGLLDQAKSFIEEMPIEPNATIWGALLGAS 475

Query: 319 RVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPG 378
           ++H+N EMG      ++E D  + G + LLSNIY    + ++  +VRK M+   +K+ P 
Sbjct: 476 KMHKNTEMGAYAAQKVLELDPFYPGAHTLLSNIYASAGQWKDVAKVRKEMKDSGLKKEPA 535

Query: 379 CSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKET 438
           CS +E++  VH F A D SH +  ++Y+ WE + +KIK  GY  +T  V   ++++EKE 
Sbjct: 536 CSWVEIENSVHIFSANDISHPQKNKVYEMWENLNQKIKEIGYVPDTSHVHVFVDQQEKEL 595

Query: 439 VIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYH 498
            + YHSEKLALAF L+ TKPGSVIRI+KNIR+C DCHSA+K VS V KR+I +RD   +H
Sbjct: 596 NLQYHSEKLALAFALLNTKPGSVIRIMKNIRVCGDCHSAIKYVSLVVKREIIVRDTNRFH 655

Query: 499 HFEDGSCSCLEYW 511
           HF DGSCSC +YW
Sbjct: 656 HFRDGSCSCRDYW 668



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 111/213 (52%), Gaps = 6/213 (2%)

Query: 51  GYVRNGEILEGLKLFDKMPQRND-VSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVV 109
           G ++ G+++    +  K   RND V  NSIL    + GS++ A +VF++M  + +V+W  
Sbjct: 105 GKLKQGKLVHTHLMNSKF--RNDLVIKNSILFMYAKCGSLEIARQVFDEMCVKDVVTWTS 162

Query: 110 LISGFAQNG---RPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQ 166
           +I+G++Q+G       AL LF EM    L PN   L SL+  C  LG+   G  ++    
Sbjct: 163 MITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSSLVKCCGFLGSCVDGKQIHGCCW 222

Query: 167 KKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFE 226
           K   + +  + ++L+DMYA+CG +  +  VF     K+  ++ + I G A  G   EA  
Sbjct: 223 KYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNEVSWNALISGFARKGEGEEALG 282

Query: 227 LFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
           LF  M+ +G      +Y A+L + S  G +E+G
Sbjct: 283 LFVKMQREGFGATEFTYSALLCSSSTTGSLEQG 315



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 89/186 (47%), Gaps = 5/186 (2%)

Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
           LEP+  I   LL  C  LG L  G  V++++     + D ++  +++ MYAKCGS+++A 
Sbjct: 87  LEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCGSLEIAR 146

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGH---SIEAFELFENMKSKGISPDSISYIAVLSACS 251
           QVF     KDV  +TS I G + +G+   +  A  LF  M   G+ P+  +  +++  C 
Sbjct: 147 QVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSSLVKCCG 206

Query: 252 HLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIW 311
            LG    G    H     +G +  +   + +VD+  R G L E+      +  K + V W
Sbjct: 207 FLGSCVDG-KQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELESK-NEVSW 264

Query: 312 GTLLGA 317
             L+  
Sbjct: 265 NALISG 270


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/468 (41%), Positives = 302/468 (64%), Gaps = 5/468 (1%)

Query: 46  NSMIN--GYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRS 103
           N++I+  G  RN E +   ++F++M  ++ VSWNS +  LV+   ++DA  +F+ M  R 
Sbjct: 457 NALISMYGKCRNMEYVR--QVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLSRD 514

Query: 104 LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYS 163
           +VSW  +IS +AQ  R  EA+  F+ M     +PNS IL  LLS C  LG+   G  +++
Sbjct: 515 VVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILLSVCGGLGSAKLGQQIHT 574

Query: 164 YIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIE 223
              K  +  + I+  AL+ MY KCG  D + +VF S  ++D+  + + I G A +G   E
Sbjct: 575 VAIKHGMDSELIVANALMSMYFKCGCAD-SHKVFDSMEERDIFTWNTFITGCAQHGLGRE 633

Query: 224 AFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMV 283
           A +++E+M+S G+ P+ ++++ +L+ACSH G V++G+ +F SM   +G+ P L+HYACMV
Sbjct: 634 AIKMYEHMESVGVLPNEVTFVGLLNACSHAGLVDEGWQFFKSMSRDYGLTPLLEHYACMV 693

Query: 284 DLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDG 343
           DLLGR G ++ AE FI  MP++PD VIW  LLGAC++H+NAE+G+R    L  ++ ++ G
Sbjct: 694 DLLGRTGDVQGAEKFIYDMPIEPDTVIWSALLGACKIHKNAEIGRRAAEKLFTTEPSNAG 753

Query: 344 RYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQE 403
            Y++LSNIY          E+RK M++R + + PGCS +++   VH F+ GD+ HEK +E
Sbjct: 754 NYVMLSNIYSSLGMWVEVAELRKIMKQRGVSKEPGCSWMQIRNKVHSFVTGDKQHEKIEE 813

Query: 404 IYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIR 463
           I    +++   ++  GY  +T  V+ DI+EE+KE+ + YHSEKLA+A+GL+ T  G  I+
Sbjct: 814 IDYTLQDLYTLLRGTGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYGLLVTPKGMPIQ 873

Query: 464 IVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           I+KN+RIC DCH+ +K VS V KR I IRD   +HHF +GSCSC ++W
Sbjct: 874 IMKNLRICGDCHTFIKFVSHVTKRDIDIRDGNRFHHFRNGSCSCGDFW 921



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 90/290 (31%), Positives = 154/290 (53%), Gaps = 10/290 (3%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           MV +N + +     +++I   S  GR+  A  V+       + S  +++ G  R G I E
Sbjct: 285 MVERNEYTW-----STMIAALSHGGRIDAAIAVYGRDPVKSIPSQTALLTGLARCGRITE 339

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
              LF+++P    VSWN+++ G ++ G VD+A  +F++MP R+ +SW  +I+G+AQNGR 
Sbjct: 340 ARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRS 399

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
           +EAL L + +    + P+ + L S   AC+ +GAL+ G  V+S   K   + +S +C AL
Sbjct: 400 EEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFNSYVCNAL 459

Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           I MY KC +++   QVF+    KD  ++ S I  L  N    +A  +F+NM S+    D 
Sbjct: 460 ISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLSR----DV 515

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAG 290
           +S+  ++SA +     ++   +F +M   H  KP       ++ + G  G
Sbjct: 516 VSWTTIISAYAQAERGDEAVEFFKTMLHEHE-KPNSPILTILLSVCGGLG 564



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 160/318 (50%), Gaps = 12/318 (3%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           +V     L+  Y+  GRV DAR VFD   + + V+WN+M++ YV+NG+I    +LFD MP
Sbjct: 94  NVRTATILLSGYARLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMARRLFDAMP 153

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE 129
            R+  SWNS++ G      + DA  +F QMP+R+LV+W V+ISG+ +  +  +   +FR 
Sbjct: 154 SRDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRM 213

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAK-CG 188
           M      P+ +   S+LSA   L  L     +   + K   + D ++  +++++Y +   
Sbjct: 214 MHHEGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDAS 273

Query: 189 SIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248
           ++D+A++ F    +++   +++ I  L+  G    A  ++     K I     S  A+L+
Sbjct: 274 ALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSIP----SQTALLT 329

Query: 249 ACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDN 308
             +  G + +    F  + D     P +  +  M+    + G+++EA+     MP + + 
Sbjct: 330 GLARCGRITEARILFEQIPD-----PIVVSWNAMITGYMQNGMVDEAKELFDRMPFR-NT 383

Query: 309 VIW-GTLLGACRVHRNAE 325
           + W G + G  +  R+ E
Sbjct: 384 ISWAGMIAGYAQNGRSEE 401



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 75/158 (47%), Gaps = 13/158 (8%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + +K+    ++ V N+L+  Y  CG   D+  VFD  ++ D+ +WN+ I G  ++G   E
Sbjct: 575 VAIKHGMDSELIVANALMSMYFKCG-CADSHKVFDSMEERDIFTWNTFITGCAQHGLGRE 633

Query: 61  GLKLFDKMPQ----RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRS-----LVSWVVLI 111
            +K+++ M       N+V++  +L      G VD+  + F  M +       L  +  ++
Sbjct: 634 AIKMYEHMESVGVLPNEVTFVGLLNACSHAGLVDEGWQFFKSMSRDYGLTPLLEHYACMV 693

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
               + G  + A     +M    +EP++ I  +LL AC
Sbjct: 694 DLLGRTGDVQGAEKFIYDMP---IEPDTVIWSALLGAC 728


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 199/515 (38%), Positives = 299/515 (58%), Gaps = 35/515 (6%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++++    +D++V  SLI  Y  CG + DA                              
Sbjct: 196 LILRIGLQFDLYVATSLIILYGKCGEINDAG----------------------------- 226

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
             K+FD M  R+  SWN++L G  + G +D A  +F +MP R++VSW  +ISG++Q+G  
Sbjct: 227 --KVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLA 284

Query: 121 KEALALFREMQSLD--LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCA 178
           ++AL+LF EM   D  + PN   ++S+L ACAQL  L+ G  ++    +  +  ++ +  
Sbjct: 285 QQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLI 344

Query: 179 ALIDMYAKCGSIDLAMQVFH--SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGI 236
           AL  MYAKCGS+  A   F   +  +K++ A+ + I   A  GH ++A   F  M   GI
Sbjct: 345 ALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGI 404

Query: 237 SPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAE 296
            PD I++  +LS CSH G V+ G  YF+ M   + I P ++HYAC+ DLLGRAG L EA 
Sbjct: 405 QPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEAS 464

Query: 297 NFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETL 356
             +  MPM     IWG+LL ACR HRN EM +     L   +  + G Y+LLSN+Y E  
Sbjct: 465 KLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAG 524

Query: 357 KGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIK 416
           + +  +++R  ++ +  K++PGCS IE++G  H FL GD SH + +EIY F E + +K+K
Sbjct: 525 RWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGGDTSHPQGKEIYMFLEALPEKMK 584

Query: 417 NYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHS 476
             GY  +T  V+ DI EEEKE  +  HSEKLA+AFG++ T   +V+R+ KN+RIC DCH+
Sbjct: 585 AAGYFPDTSYVLHDISEEEKEFNLIAHSEKLAVAFGILNTPAETVLRVTKNLRICGDCHT 644

Query: 477 AMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           AM  +S+++ R++ +RD   +HHF+ G CSC +YW
Sbjct: 645 AMVFISEIYGREVIVRDINRFHHFKGGCCSCGDYW 679



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 59/265 (22%), Positives = 116/265 (43%), Gaps = 35/265 (13%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           G +D +  VFN + + S + +  +I  +A+ G  +  +A +  M S     +      +L
Sbjct: 119 GDIDSSVSVFNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVL 178

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
            +  +L ++  G  V+  I +  ++ D  +  +LI +Y KCG I+ A +VF +   +DVS
Sbjct: 179 KSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVS 238

Query: 207 -------------------------------AYTSAIFGLAMNGHSIEAFELFENM--KS 233
                                          ++T+ I G + +G + +A  LF+ M  + 
Sbjct: 239 SWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKED 298

Query: 234 KGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLE 293
            G+ P+ ++ ++VL AC+ L  +E+G    H +    G+         +  +  + G L 
Sbjct: 299 SGVRPNWVTIMSVLPACAQLSTLERG-RQIHELACRMGLNSNASVLIALTAMYAKCGSLV 357

Query: 294 EAENFIASMPMKPDNVI-WGTLLGA 317
           +A N    +     N+I W T++ A
Sbjct: 358 DARNCFDKLNRNEKNLIAWNTMITA 382



 Score = 42.0 bits (97), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 75/166 (45%), Gaps = 2/166 (1%)

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSA 211
           L  L  G+ V++++  + ++  +++ + ++  YA  G ID ++ VF+  G+     + S 
Sbjct: 83  LNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGIGEPSSLLFNSM 142

Query: 212 IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG 271
           I   A  G +      + +M S G + D  ++  VL +   L  V  G    H +    G
Sbjct: 143 IRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMG-KCVHGLILRIG 201

Query: 272 IKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
           ++ +L     ++ L G+ G + +A     +M ++ D   W  LL  
Sbjct: 202 LQFDLYVATSLIILYGKCGEINDAGKVFDNMTIR-DVSSWNALLAG 246


>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 642

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 199/515 (38%), Positives = 299/515 (58%), Gaps = 35/515 (6%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++++    +D++V  SLI  Y  CG + DA                              
Sbjct: 159 LILRIGLQFDLYVATSLIILYGKCGEINDAG----------------------------- 189

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
             K+FD M  R+  SWN++L G  + G +D A  +F +MP R++VSW  +ISG++Q+G  
Sbjct: 190 --KVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLA 247

Query: 121 KEALALFREMQSLD--LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCA 178
           ++AL+LF EM   D  + PN   ++S+L ACAQL  L+ G  ++    +  +  ++ +  
Sbjct: 248 QQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLI 307

Query: 179 ALIDMYAKCGSIDLAMQVFH--SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGI 236
           AL  MYAKCGS+  A   F   +  +K++ A+ + I   A  GH ++A   F  M   GI
Sbjct: 308 ALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGI 367

Query: 237 SPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAE 296
            PD I++  +LS CSH G V+ G  YF+ M   + I P ++HYAC+ DLLGRAG L EA 
Sbjct: 368 QPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEAS 427

Query: 297 NFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETL 356
             +  MPM     IWG+LL ACR HRN EM +     L   +  + G Y+LLSN+Y E  
Sbjct: 428 KLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAG 487

Query: 357 KGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIK 416
           + +  +++R  ++ +  K++PGCS IE++G  H FL GD SH + +EIY F E + +K+K
Sbjct: 488 RWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGGDTSHPQGKEIYMFLEALPEKMK 547

Query: 417 NYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHS 476
             GY  +T  V+ DI EEEKE  +  HSEKLA+AFG++ T   +V+R+ KN+RIC DCH+
Sbjct: 548 AAGYFPDTSYVLHDISEEEKEFNLIAHSEKLAVAFGILNTPAETVLRVTKNLRICGDCHT 607

Query: 477 AMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           AM  +S+++ R++ +RD   +HHF+ G CSC +YW
Sbjct: 608 AMVFISEIYGREVIVRDINRFHHFKGGCCSCGDYW 642



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 91/207 (43%), Gaps = 35/207 (16%)

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           +L +  +L ++  G  V+  I +  ++ D  +  +LI +Y KCG I+ A +VF +   +D
Sbjct: 140 VLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRD 199

Query: 205 VS-------------------------------AYTSAIFGLAMNGHSIEAFELFENM-- 231
           VS                               ++T+ I G + +G + +A  LF+ M  
Sbjct: 200 VSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVK 259

Query: 232 KSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGL 291
           +  G+ P+ ++ ++VL AC+ L  +E+G    H +    G+         +  +  + G 
Sbjct: 260 EDSGVRPNWVTIMSVLPACAQLSTLERG-RQIHELACRMGLNSNASVLIALTAMYAKCGS 318

Query: 292 LEEAENFIASMPMKPDNVI-WGTLLGA 317
           L +A N    +     N+I W T++ A
Sbjct: 319 LVDARNCFDKLNRNEKNLIAWNTMITA 345


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/516 (39%), Positives = 307/516 (59%), Gaps = 11/516 (2%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
            K   +  +FV N L+  Y  CG + +AR V DE    DVVSWNS++ GY +N    + L
Sbjct: 167 TKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDAL 226

Query: 63  KLFDKMPQ---RNDVSWNSILGGLVRFGSVDDACRV---FNQMPKRSLVSWVVLISGFAQ 116
           ++  +M      +D    + L   V   + ++   V   F +M K+SLVSW V+I  + +
Sbjct: 227 EVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMK 286

Query: 117 NGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSIL 176
           N  P EA+ L+  M++   EP++  + S+L AC    AL  G  ++ YI++K +  + +L
Sbjct: 287 NAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLL 346

Query: 177 CAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGI 236
             ALIDMYAKCG ++ A  VF +   +DV ++T+ I     +G   +A  LF  ++  G+
Sbjct: 347 ENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGL 406

Query: 237 SPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAE 296
            PDSI+++  L+ACSH G +E+G   F  M D + I P L+H ACMVDLLGRAG ++EA 
Sbjct: 407 VPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAY 466

Query: 297 NFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETL 356
            FI  M M+P+  +WG LLGACRVH + ++G    + L +      G Y+LLSNIY +  
Sbjct: 467 RFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAG 526

Query: 357 KGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIK 416
           + E    +R  M+ + +K+ PG S +E++ ++H FL GDRSH ++ EIY+  + +VKK+K
Sbjct: 527 RWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVKKMK 586

Query: 417 NYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTK-----PGSVIRIVKNIRIC 471
             GY  ++ S + D+EEE+KET +  HSEKLA+ F L+ TK       + IRI KN+RIC
Sbjct: 587 ELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTKEEEEDSNNTIRITKNLRIC 646

Query: 472 SDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSC 507
            DCH A KL+S++  R+I IRD   +H F  G CSC
Sbjct: 647 GDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSC 682



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 144/319 (45%), Gaps = 30/319 (9%)

Query: 73  DVSWNSILG-GLVR-FGSVDD---ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALF 127
           D+  NS LG  L+R + S+ D   A +VF+++P+R+++   V+I  +  NG   E + +F
Sbjct: 69  DLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVF 128

Query: 128 REMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC 187
             M   ++ P+      +L AC+  G +  G  ++    K  +     +   L+ MY KC
Sbjct: 129 GTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKC 188

Query: 188 GSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVL 247
           G +  A  V      +DV ++ S + G A N    +A E+   M+S  IS D+ +  ++L
Sbjct: 189 GFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLL 248

Query: 248 SACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP---M 304
            A S+     +   Y   MF   G K  L  +  M+ +  +  +  EA    + M     
Sbjct: 249 PAVSNT--TTENVMYVKDMFFKMG-KKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGF 305

Query: 305 KPDNVIWGTLLGAC----------RVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVE 354
           +PD V   ++L AC          ++H   E  + I N+L+E+          L ++Y +
Sbjct: 306 EPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLEN---------ALIDMYAK 356

Query: 355 TLKGENAEEVRKTMRKRKI 373
               E A +V + M+ R +
Sbjct: 357 CGCLEKARDVFENMKSRDV 375



 Score = 45.4 bits (106), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 2/155 (1%)

Query: 161 VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGH 220
           V+S I  + ++ +S L   L+  YA    +  A +VF    +++V      I     NG 
Sbjct: 61  VHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGF 120

Query: 221 SIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA 280
             E  ++F  M    + PD  ++  VL ACS  G +  G     S   V G+   L    
Sbjct: 121 YGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKV-GLSSTLFVGN 179

Query: 281 CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
            +V + G+ G L EA   +  M  + D V W +L+
Sbjct: 180 GLVSMYGKCGFLSEARLVLDEMSRR-DVVSWNSLV 213


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 213/533 (39%), Positives = 308/533 (57%), Gaps = 40/533 (7%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP- 69
           + ++N ++  Y+ CG + DAR +FDE    D+V+W ++I G+ +N    + L LF +M  
Sbjct: 123 LVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLR 182

Query: 70  ---QRNDVSWNSILG------GL-----------------------------VRFGSVDD 91
              Q N  + +S+L       GL                              R G +D 
Sbjct: 183 LGFQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDA 242

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           A   F+ MP +S VSW  LISG A+ G  + AL L  +MQ  + +P      S+LSACA 
Sbjct: 243 AQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACAS 302

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSA 211
           +GAL+ G WV++++ K  +KL + +   L+DMYAK GSID A +VF      DV ++ + 
Sbjct: 303 IGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTM 362

Query: 212 IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG 271
           + G A +G   E  + FE M   GI P+ IS++ VL+ACSH G +++G YYF  M   + 
Sbjct: 363 LTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELM-KKYK 421

Query: 272 IKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIG 331
           ++P++ HY   VDLLGR GLL+ AE FI  MP++P   +WG LLGACR+H+N E+G    
Sbjct: 422 VEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAA 481

Query: 332 NMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEF 391
               E D +  G  +LLSNIY    +  +  +VRK M++  +K+ P CS +E++  VH F
Sbjct: 482 ERAFELDPHDSGPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLF 541

Query: 392 LAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAF 451
           +A D +H + +EI   WEEI  KIK  GY  +T  V+  ++++E+E  + YHSEKLALAF
Sbjct: 542 VANDETHPRIKEIRGKWEEISGKIKEIGYVPDTSHVLLFVDQQEREEKLQYHSEKLALAF 601

Query: 452 GLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGS 504
            L+ T  GS IRI KNIR+C DCH+A+K VSKV  R+I +RD   +H F DGS
Sbjct: 602 ALLNTPTGSPIRIKKNIRVCGDCHAAIKFVSKVVDREIIVRDTNRFHRFRDGS 654



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 88/271 (32%), Positives = 140/271 (51%), Gaps = 2/271 (0%)

Query: 51  GYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVL 110
           G V  G I+    +       + V  N I+    + G +DDA R+F++MP + +V+W  L
Sbjct: 101 GKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTAL 160

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCI 170
           I+GF+QN RP++AL LF +M  L  +PN   L SLL A      LD G  ++++  K   
Sbjct: 161 IAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGY 220

Query: 171 KLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFEN 230
           +    + +AL+DMYA+CG +D A   F     K   ++ + I G A  G    A  L   
Sbjct: 221 QSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWK 280

Query: 231 MKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAG 290
           M+ K   P   +Y +VLSAC+ +G +E+G  + H+     G+K        ++D+  +AG
Sbjct: 281 MQRKNFQPTHFTYSSVLSACASIGALEQG-KWVHAHMIKSGLKLIAFIGNTLLDMYAKAG 339

Query: 291 LLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            +++A+     + +KPD V W T+L  C  H
Sbjct: 340 SIDDAKRVFDRL-VKPDVVSWNTMLTGCAQH 369



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 115/251 (45%), Gaps = 39/251 (15%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +K  +   V+V ++L+  Y+ CG +  A+  FD       VSWN++I+G+ R GE    L
Sbjct: 216 LKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHAL 275

Query: 63  KLFDKMPQRN----------------------DVSW-----------------NSILGGL 83
            L  KM ++N                         W                 N++L   
Sbjct: 276 HLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMY 335

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
            + GS+DDA RVF+++ K  +VSW  +++G AQ+G  KE L  F +M  + +EPN    +
Sbjct: 336 AKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFL 395

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
            +L+AC+  G LD G + +  ++K  ++ D       +D+  + G +D A +       +
Sbjct: 396 CVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIE 455

Query: 204 DVSAYTSAIFG 214
             +A   A+ G
Sbjct: 456 PTAAVWGALLG 466



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 90/198 (45%), Gaps = 18/198 (9%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K+      F+ N+L+  Y+  G + DA+ VFD     DVVSWN+M+ G  ++G   E 
Sbjct: 316 MIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKET 375

Query: 62  LKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPK----RSLVSWVVLISG 113
           L  F++M     + N++S+  +L      G +D+    F  M K      +  +V  +  
Sbjct: 376 LDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDL 435

Query: 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD 173
             + G    A    REM    +EP +A+  +LL AC     ++ G     Y  ++  +LD
Sbjct: 436 LGRVGLLDRAERFIREMP---IEPTAAVWGALLGACRMHKNMELG----VYAAERAFELD 488

Query: 174 SILCAA---LIDMYAKCG 188
                    L ++YA  G
Sbjct: 489 PHDSGPRMLLSNIYASAG 506


>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Brachypodium distachyon]
          Length = 669

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/550 (36%), Positives = 326/550 (59%), Gaps = 46/550 (8%)

Query: 7   FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFD 66
           F  D F  ++L+  Y+ C R  DAR  FDE    + V   +M +GYVRN  +   L LF 
Sbjct: 121 FPSDPFSASALLHMYNHCSRPIDARKAFDEIPSPNPVIITAMASGYVRNNLVYPSLALFR 180

Query: 67  KMPQRNDVSW-----------------------------------------NSILGGLVR 85
           K+      +                                          N++L    +
Sbjct: 181 KLIASGSATAVDEAAALVAFSASARIPDCGITSSLHALVVKTGLDGDAGVVNTMLDAYAK 240

Query: 86  FGSVD--DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD--LEPNSAI 141
            G  D   A +VF+ M K  +VSW  +I+ +AQNG   +AL L+R+M ++   ++ N+  
Sbjct: 241 GGRRDLGAARKVFDTMEK-DVVSWNSMIALYAQNGMSADALGLYRKMLNVSGSIKCNAVT 299

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           L ++L ACA  G +  G  +++ + +  ++ +  +  +++DMY+KCG +++A + F    
Sbjct: 300 LSAILLACAHAGTIQTGKCIHNQVVRMGLEENVYVGTSVVDMYSKCGRVEMARKAFQKIK 359

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
           +K++ ++++ I G  M+GH  EA ++F  M   G +P+ I++I+VL+ACSH G ++KG Y
Sbjct: 360 EKNILSWSAMITGYGMHGHGQEALDIFNEMCRSGQNPNYITFISVLAACSHAGLLDKGRY 419

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           ++++M    GI+P ++HY CMVDLLGRAG L+EA   I  M +KPD  IWG LL ACR+H
Sbjct: 420 WYNAMKKRFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAAIWGALLSACRIH 479

Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
           +N E+ +     L E D  + G Y+LLSNIY E    ++ E +R  ++ R I++ PG S 
Sbjct: 480 KNVELAEISAKRLFELDATNCGYYVLLSNIYAEAGMWKDVERMRVLVKTRGIEKPPGYSS 539

Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIG 441
           +EL G  H F  GD+SH + +EIY +  ++++K++  GY   T SV+ D++EEEK + + 
Sbjct: 540 VELKGRTHLFYVGDKSHPQHKEIYSYLGKLLEKMQEAGYVPNTGSVLHDLDEEEKASALH 599

Query: 442 YHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
            HSEKLA+AF L+ + PGSVI ++KN+R+C+DCH+A+KL++K+ +R+I +RD + +HHF+
Sbjct: 600 IHSEKLAIAFALMNSVPGSVIHVIKNLRVCTDCHTAIKLITKIAQREIIVRDLQRFHHFK 659

Query: 502 DGSCSCLEYW 511
           DGSCSC +YW
Sbjct: 660 DGSCSCGDYW 669



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 82/157 (52%), Gaps = 12/157 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VV+     +V+V  S++  YS CGRV  AR  F +  + +++SW++MI GY  +G   E 
Sbjct: 323 VVRMGLEENVYVGTSVVDMYSKCGRVEMARKAFQKIKEKNILSWSAMITGYGMHGHGQEA 382

Query: 62  LKLFDKM----PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLIS 112
           L +F++M       N +++ S+L      G +D     +N M KR      +  +  ++ 
Sbjct: 383 LDIFNEMCRSGQNPNYITFISVLAACSHAGLLDKGRYWYNAMKKRFGIEPGVEHYGCMVD 442

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
              + G   EA  L +EM+   ++P++AI  +LLSAC
Sbjct: 443 LLGRAGCLDEAYGLIKEMK---VKPDAAIWGALLSAC 476


>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
          Length = 645

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/538 (37%), Positives = 301/538 (55%), Gaps = 39/538 (7%)

Query: 13  VKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKL----FDKM 68
           V  SL+  Y+ CG +  A+ VFDE      V W ++I  Y+  G++ E + +    F   
Sbjct: 108 VLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANG 167

Query: 69  PQRNDVSWNSILGGLVRF-----------------------------------GSVDDAC 93
            + +  +   +L    R                                    G +  A 
Sbjct: 168 MRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAR 227

Query: 94  RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153
            VF++M  +  V+W  ++ G+A NG P+EAL LF  MQ+  ++P+   +   LSAC +LG
Sbjct: 228 EVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLG 287

Query: 154 ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIF 213
           ALD G      +       + +L  ALIDMYAKCGS   A  VF     KD+  + + I 
Sbjct: 288 ALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMIL 347

Query: 214 GLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIK 273
           GL M GH   AF L   M+  G+  +  ++I +L +C+H G ++ G  YFH+M  ++ I 
Sbjct: 348 GLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHIS 407

Query: 274 PELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNM 333
           P ++HY CMVDLL RAGLL+EA   +  MPM  + VI G LLG C++HRN E+ + +   
Sbjct: 408 PRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQ 467

Query: 334 LIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLA 393
           LI  +  + G Y++LSNIY    + E+A ++R  M+ + +++ P CS +E +G VHEF  
Sbjct: 468 LILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRV 527

Query: 394 GDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGL 453
           GD+SH  + +IY+  +E+  ++K  GY   T  VMFD+E+EEKE  + +HSEKLA+AF L
Sbjct: 528 GDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNL 587

Query: 454 ICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           + T PG  IR+ KN+R+CSDCH+A+KLVS++  R+I +RD   +H F DGSCSC +YW
Sbjct: 588 LITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 645



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 130/265 (49%), Gaps = 7/265 (2%)

Query: 53  VRNGEILEGLKLFDKMP-QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLI 111
           +R GE L    L  K+P   N     S+L    + G +  A RVF++MP  S V W  LI
Sbjct: 87  LRAGEQLHARSL--KLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALI 144

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK 171
           + +   G  +EA+ + R   +  + P+S   V +L+ACA++  L  G  V+   +++ + 
Sbjct: 145 TAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVA 204

Query: 172 LDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM 231
               +  A +D+Y KCG +  A +VF     KD  A+ + + G A NGH  EA +LF  M
Sbjct: 205 QSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAM 264

Query: 232 KSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM-FDVHGIKPELDHYACMVDLLGRAG 290
           +++G+ PD  +    LSAC+ LG ++ G      + +D     P L     ++D+  + G
Sbjct: 265 QAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLG--TALIDMYAKCG 322

Query: 291 LLEEAENFIASMPMKPDNVIWGTLL 315
              EA      M  K D ++W  ++
Sbjct: 323 STVEAWVVFQQM-RKKDIIVWNAMI 346



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 96/235 (40%), Gaps = 44/235 (18%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           +   A  VFV  + +  Y  CG +  AR VFD+    D V+W +M+ GY  NG   E L 
Sbjct: 200 QEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALD 259

Query: 64  LFDKMP---QRND--------------------------VSW-----NSILGGLV----- 84
           LF  M     + D                          V W     N +LG  +     
Sbjct: 260 LFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYA 319

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
           + GS  +A  VF QM K+ ++ W  +I G    G  K A AL  +M+   ++ N    + 
Sbjct: 320 KCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIG 379

Query: 145 LLSACAQLGALDYGNWVYSYIQKK---CIKLDSILCAALIDMYAKCGSIDLAMQV 196
           LL +C   G +  G   +  + K      +++   C  ++D+ ++ G +  A Q+
Sbjct: 380 LLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGC--MVDLLSRAGLLQEAHQL 432



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 12/158 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           MV  + F  +  +  +LI  Y+ CG   +A  VF +    D++ WN+MI G    G    
Sbjct: 298 MVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKI 357

Query: 61  GLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLI 111
              L  +M +     ND ++  +L      G + D  R F+ M K   +S     +  ++
Sbjct: 358 AFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMV 417

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
              ++ G  +EA  L  +M    +  N+ IL +LL  C
Sbjct: 418 DLLSRAGLLQEAHQLVDDMP---MPANAVILGALLGGC 452


>gi|302763761|ref|XP_002965302.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
 gi|300167535|gb|EFJ34140.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
          Length = 600

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/551 (37%), Positives = 314/551 (56%), Gaps = 41/551 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDE--SDDLDVVSWNSMINGYVRNGEIL 59
           +VK+ +A D  + N LI+ Y  CG + +AR VFD+    + DV+SWN +I  Y +NG   
Sbjct: 50  LVKDGYASDRLIANLLIEMYGKCGGIAEARSVFDQIQEKNADVISWNGIIGAYTQNGLGK 109

Query: 60  EGLKLF---------------------------------------DKMPQRNDVSWNSIL 80
           E L LF                                       DK  + + +   S++
Sbjct: 110 EALHLFKTMDLEGVIANQVTLINAIDACASLPSEEEGRIVHAIAVDKRLESDTMVGTSLV 169

Query: 81  GGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
               +  +VD A  VF+ +P+++LV+W  +++ ++QN + K+A+ +FR M    ++P++ 
Sbjct: 170 NMFGKCKNVDAARAVFDSLPRKNLVTWNNMVAVYSQNWQCKKAIQVFRFMDLEGVQPDAV 229

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
             ++++ ACA L A   G  V+  I    I +D  L  A++  Y KCG +D A  +F S 
Sbjct: 230 TFLTIIDACAALAAHTEGRMVHDDITASGIPMDVALGTAVMHFYGKCGRLDNARAIFDSL 289

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
           G K+   +++ +   A NG+  EA EL+  M   G+  + I+++ +L ACSH G    G 
Sbjct: 290 GKKNTVTWSAILAAYAQNGYETEAIELYHEMVQGGLEVNGITFLGLLFACSHAGRSMDGV 349

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
            YF SM    G+ P  +HY  ++DLLGR+G L+ +E+ I SMP +PD+  W  LLGACR+
Sbjct: 350 DYFVSMIRDFGVVPVFEHYLNLIDLLGRSGQLQLSEDLINSMPYEPDSSAWLALLGACRM 409

Query: 321 HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS 380
           H + + G RI  ++ E D    G YILLSN+Y  T + + A   RK MR R I + PG S
Sbjct: 410 HGDVDRGARIAELIYELDPEDSGPYILLSNLYSSTGRMDEARRTRKAMRLRGITKQPGLS 469

Query: 381 LIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVI 440
            IE+   VHEF+A  + H +   I+   E +  ++K  GY  + R+V+ D+EEEEKE ++
Sbjct: 470 SIEVKDRVHEFMAAQKLHPQLGRIHAEIERLKARVKEAGYVADVRAVLRDVEEEEKEQLL 529

Query: 441 GYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF 500
            YHSE+LA+AFGLI T PG+ + IVKN+R+C DCH+A+K +SKV  RKI +RD   +HHF
Sbjct: 530 WYHSERLAIAFGLISTPPGTALHIVKNLRVCFDCHAAVKAISKVVGRKIVVRDAIRFHHF 589

Query: 501 EDGSCSCLEYW 511
           E+G+CSC +YW
Sbjct: 590 ENGACSCGDYW 600



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 4/176 (2%)

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           V LL  CA   AL  G  V+S + K     D ++   LI+MY KCG I  A  VF    +
Sbjct: 28  VLLLKKCADSKALLEGKRVHSCLVKDGYASDRLIANLLIEMYGKCGGIAEARSVFDQIQE 87

Query: 203 K--DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
           K  DV ++   I     NG   EA  LF+ M  +G+  + ++ I  + AC+ L   E+G 
Sbjct: 88  KNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEGVIANQVTLINAIDACASLPSEEEG- 146

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLG 316
              H++     ++ +      +V++ G+   ++ A     S+P K + V W  ++ 
Sbjct: 147 RIVHAIAVDKRLESDTMVGTSLVNMFGKCKNVDAARAVFDSLPRK-NLVTWNNMVA 201


>gi|357124741|ref|XP_003564056.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Brachypodium distachyon]
          Length = 594

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 199/444 (44%), Positives = 278/444 (62%), Gaps = 15/444 (3%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALF-------RE 129
            +++    + G +  A +VF++M  R + SW  L++G AQ   P  ALALF       RE
Sbjct: 157 TTLVDSYAKCGDLASARKVFDEMVVRDVASWNALLAGLAQGTEPTLALALFHRLVGSFRE 216

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
           +   + EPN   +V+ LSACAQ+G+L  G +V+ + +K  +  +  +C ALIDMY+KCGS
Sbjct: 217 LPPRE-EPNEVTIVAALSACAQIGSLQDGLYVHEFARKIGVNGNVRVCNALIDMYSKCGS 275

Query: 190 IDLAMQVFHSYG--DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVL 247
           +DLA++VFHS    D+ + +Y +AI  ++M+GH  +A  LF+ M +  I PD ++YIAVL
Sbjct: 276 LDLALEVFHSIKREDRTLVSYNTAIQAVSMHGHGGDALRLFDEMPTF-IEPDEVTYIAVL 334

Query: 248 SACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPD 307
             C+H G V+ G   FHSM     + P + HY  +VDLLGRAG L EA + I SMP   D
Sbjct: 335 CGCNHAGLVDDGLRVFHSM----RVLPNVKHYGAVVDLLGRAGRLAEAYDTIVSMPFPAD 390

Query: 308 NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKT 367
            V+W TLLGA + H + E+ +     L E   N DG Y+LLSN+Y    +  +   VR T
Sbjct: 391 IVLWQTLLGAAKTHGDVELAELAATKLDELGSNVDGDYVLLSNVYASKARWADVRRVRDT 450

Query: 368 MRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSV 427
           MR   +++ PG S  E+ GV+H+F+ GD+ H + QEIY+  EEIV +I   GY  ET +V
Sbjct: 451 MRSNDVRKVPGFSYTEISGVMHKFINGDKEHPRWQEIYRALEEIVSRIGELGYEPETSNV 510

Query: 428 MFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKR 487
           + DI EEEK+  + YHSEKLA+AFGLI T PG  +R++KN+R C DCH   KL+SK + R
Sbjct: 511 LHDIGEEEKQYALSYHSEKLAIAFGLIATPPGETLRVIKNLRTCGDCHVVAKLISKAYGR 570

Query: 488 KISIRDRKHYHHFEDGSCSCLEYW 511
            I IRDR  +H FEDG CSC +YW
Sbjct: 571 VIIIRDRARFHQFEDGQCSCKDYW 594



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 86/200 (43%), Gaps = 48/200 (24%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDK-- 67
           DV +  +L+  Y+ CG +  AR VFDE    DV SWN+++ G  +  E    L LF +  
Sbjct: 152 DVRLITTLVDSYAKCGDLASARKVFDEMVVRDVASWNALLAGLAQGTEPTLALALFHRLV 211

Query: 68  -----MPQRNDVSWNSILGGL---------------------------VRF--------- 86
                +P R + +  +I+  L                           VR          
Sbjct: 212 GSFRELPPREEPNEVTIVAALSACAQIGSLQDGLYVHEFARKIGVNGNVRVCNALIDMYS 271

Query: 87  --GSVDDACRVFNQMPK--RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             GS+D A  VF+ + +  R+LVS+   I   + +G   +AL LF EM +  +EP+    
Sbjct: 272 KCGSLDLALEVFHSIKREDRTLVSYNTAIQAVSMHGHGGDALRLFDEMPTF-IEPDEVTY 330

Query: 143 VSLLSACAQLGALDYGNWVY 162
           +++L  C   G +D G  V+
Sbjct: 331 IAVLCGCNHAGLVDDGLRVF 350


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 203/541 (37%), Positives = 317/541 (58%), Gaps = 40/541 (7%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ 70
           V V  +L+  Y+ CG +  A  VF+     + V+W++++ G+V  G +LE   LF  M  
Sbjct: 268 VLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLA 327

Query: 71  R----------------------------------------NDVSWNSILGGLVRFGSVD 90
           +                                        +  + NS+L    + G +D
Sbjct: 328 QGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGLHTDLTAGNSLLSMYAKAGLID 387

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
            A  +F+QM  +  VS+  L+SG+ QNG+  EA  +FR+MQ+ +++P+ A +VSL+ AC+
Sbjct: 388 QATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPDVATMVSLIPACS 447

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
            L AL +G   +  +  + I  ++ +C ALIDMYAKCG IDL+ Q+F     +D+ ++ +
Sbjct: 448 HLAALQHGKCGHGSVIVRGIASETSICNALIDMYAKCGRIDLSRQIFDVMPARDIVSWNT 507

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I G  ++G   EA  LF +MK +   PD +++I ++SACSH G V +G  +FH M   +
Sbjct: 508 MIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISACSHSGLVTEGKRWFHMMAHKY 567

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
           GI P ++HY  MVDLL R G L+EA  FI  MP+K D  +WG LLGACRVH+N ++G+++
Sbjct: 568 GITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADVRVWGALLGACRVHKNIDLGKQV 627

Query: 331 GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHE 390
            +M+ +      G ++LLSNI+    + + A EVR   +++  K++PGCS IE++G +H 
Sbjct: 628 SSMIQQLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKEQGFKKSPGCSWIEINGSLHA 687

Query: 391 FLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALA 450
           F+ GDRSH ++ EIYQ  + I+  I   GY  +T  V+ D+EEEEKE  + YHSEKLA+A
Sbjct: 688 FIGGDRSHAQSSEIYQELDNILVDINKLGYRADTSFVLQDVEEEEKEKALLYHSEKLAIA 747

Query: 451 FGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEY 510
           FG++       I + KN+R+C DCH+ +K ++ V KR I +RD   +HHF++G CSC ++
Sbjct: 748 FGVLTLSEDKTIFVTKNLRVCGDCHTVIKYMTLVRKRAIIVRDANRFHHFKNGQCSCGDF 807

Query: 511 W 511
           W
Sbjct: 808 W 808



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 99/357 (27%), Positives = 158/357 (44%), Gaps = 49/357 (13%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNG---EILEGLKLFD 66
           D+FV  +L+  Y+ C   R A  VF      DVV+WN+M+ GY  +G   + +  L L  
Sbjct: 163 DLFVSTALVDVYAKCASFRHAATVFRRMPARDVVAWNAMLAGYALHGKYSDTIACLLLMQ 222

Query: 67  KMPQRNDVSWNSILGGLVRFGSVDD----------------------------------- 91
                N  +  ++L  L + G++                                     
Sbjct: 223 DDHAPNASTLVALLPLLAQHGALSQGRAVHAYSVRACSLHDHKDGVLVGTALLDMYAKCG 282

Query: 92  ----ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD---LEPNSAILVS 144
               A RVF  M  R+ V+W  L+ GF   GR  EA +LF++M +     L P S  + S
Sbjct: 283 HLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTS--VAS 340

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
            L ACA L  L  G  +++ + K  +  D     +L+ MYAK G ID A  +F     KD
Sbjct: 341 ALRACANLSDLCLGKQLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKD 400

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
             +Y++ + G   NG + EAF +F  M++  + PD  + ++++ ACSHL  ++ G    H
Sbjct: 401 TVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPDVATMVSLIPACSHLAALQHG-KCGH 459

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
               V GI  E      ++D+  + G ++ +      MP + D V W T++    +H
Sbjct: 460 GSVIVRGIASETSICNALIDMYAKCGRIDLSRQIFDVMPAR-DIVSWNTMIAGYGIH 515



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 107/235 (45%), Gaps = 40/235 (17%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++ K+    D+   NSL+  Y+  G +  A  +FD+    D VS++++++GYV+NG+  E
Sbjct: 360 LLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADE 419

Query: 61  GLKLFDKMPQ-----------------------------------RNDVSWNSILGGLV- 84
             ++F KM                                     R   S  SI   L+ 
Sbjct: 420 AFRVFRKMQACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSICNALID 479

Query: 85  ---RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G +D + ++F+ MP R +VSW  +I+G+  +G  KEA ALF +M+    EP+   
Sbjct: 480 MYAKCGRIDLSRQIFDVMPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVT 539

Query: 142 LVSLLSACAQLGALDYGN-WVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ 195
            + L+SAC+  G +  G  W +    K  I         ++D+ A+ G +D A Q
Sbjct: 540 FICLISACSHSGLVTEGKRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQ 594



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 86/175 (49%), Gaps = 12/175 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+    A +  + N+LI  Y+ CGR+  +R +FD     D+VSWN+MI GY  +G   E 
Sbjct: 462 VIVRGIASETSICNALIDMYAKCGRIDLSRQIFDVMPARDIVSWNTMIAGYGIHGLGKEA 521

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLIS 112
             LF  M  +    +DV++  ++      G V +  R F+ M  +  ++     ++ ++ 
Sbjct: 522 TALFLDMKHQACEPDDVTFICLISACSHSGLVTEGKRWFHMMAHKYGITPRMEHYIGMVD 581

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK 167
             A+ G   EA   ++ +Q + L+ +  +  +LL AC     +D G  V S IQ+
Sbjct: 582 LLARGGFLDEA---YQFIQGMPLKADVRVWGALLGACRVHKNIDLGKQVSSMIQQ 633



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 100/233 (42%), Gaps = 5/233 (2%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           G +  A  +F+Q+P   +  +  LI  ++  G            +    +PN+     +L
Sbjct: 77  GDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFVL 136

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
            AC+ L  L     V+ +  +  +  D  +  AL+D+YAKC S   A  VF     +DV 
Sbjct: 137 KACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDVV 196

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG---FYYF 263
           A+ + + G A++G   +       M+    +P++ + +A+L   +  G + +G     Y 
Sbjct: 197 AWNAMLAGYALHGKYSDTIACLLLMQDDH-APNASTLVALLPLLAQHGALSQGRAVHAYS 255

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLG 316
                +H  K  +     ++D+  + G L  A     +M ++ + V W  L+G
Sbjct: 256 VRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVR-NEVTWSALVG 307


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 223/569 (39%), Positives = 321/569 (56%), Gaps = 76/569 (13%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDES------------------------ 37
           V+K  F  D++V  SLI  Y+  GR+ DA+ VFD S                        
Sbjct: 101 VLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYTALITGYASRGYIESA 160

Query: 38  ----DDL---DVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDV---------------- 74
               D++   DVVSWN+MI+GY   G   + L+LF +M + N                  
Sbjct: 161 QKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTMATVVSACAQS 220

Query: 75  ----------SW-------------NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLI 111
                     SW             N+++    + G V+ AC +   +  + ++SW  LI
Sbjct: 221 GSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACELLEGLSNKDVISWNTLI 280

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKK--- 168
            G+      KEAL LF+EM      PN   ++S+L ACA LGA+D G W++ YI KK   
Sbjct: 281 GGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKG 340

Query: 169 -CIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG-DKDVSAYTSAIFGLAMNGHSIEAFE 226
             +   S L  +LIDMYAKCG ID A QV  S   ++ +S + + IFG AM+G +  AF+
Sbjct: 341 VVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFD 400

Query: 227 LFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLL 286
           +F  M+  GI PD I+++ +LSACSH G ++ G   F SM   + I P+L+HY CM+DLL
Sbjct: 401 IFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQDYNITPKLEHYGCMIDLL 460

Query: 287 GRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYI 346
           G +GL +EAE  I +MPM+PD VIW +LL AC++H N E+G+     LI+ +  + G Y+
Sbjct: 461 GHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPENPGSYV 520

Query: 347 LLSNIYVETLKGENAEEVRKTMRKRKI-KRAPGCSLIELDGVVHEFLAGDRSHEKTQEIY 405
           LLSNIY    K     ++R  +  + + K+ PGCS IE+D VVHEF+ GD+ H + +EIY
Sbjct: 521 LLSNIYATAGKWNEVXKIRTLLNDKGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREIY 580

Query: 406 QFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIV 465
              EE+   ++  G+  +T  V+ ++EEE KE  + +HSEKLA+AFGLI TKPG+ + IV
Sbjct: 581 GMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIV 640

Query: 466 KNIRICSDCHSAMKLVSKVFKRKISIRDR 494
           KN+R+C +CH A KL+SK++KR+I  RDR
Sbjct: 641 KNLRVCRNCHEATKLISKIYKREIIARDR 669



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 133/297 (44%), Gaps = 70/297 (23%)

Query: 33  VFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM------PQRNDVSW---------- 76
           VF+   + + + WN M  G+  + + +  LKL+  M      P      +          
Sbjct: 31  VFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKSCAKSKT 90

Query: 77  -----------------------NSILGGLVRFGSVDDACRVFNQMPKRSLV-------- 105
                                   S++    + G ++DA +VF++   R +V        
Sbjct: 91  FKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYTALITG 150

Query: 106 -----------------------SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
                                  SW  +ISG+A+ G  K+AL LF+EM   +++P+ + +
Sbjct: 151 YASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTM 210

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            +++SACAQ G+++ G  V+S+I       +  +  ALID+Y+KCG ++ A ++     +
Sbjct: 211 ATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACELLEGLSN 270

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
           KDV ++ + I G        EA  LF+ M   G +P+ ++ +++L AC+HLG ++ G
Sbjct: 271 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIG 327



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 115/264 (43%), Gaps = 35/264 (13%)

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
           F  +  A  VF  +P+ + + W ++  G A +  P  AL L+  M SL L PN      L
Sbjct: 22  FDGLPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFL 81

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
           L +CA+      G  ++ ++ K    LD  +  +LI MYA+ G ++ A +VF     +DV
Sbjct: 82  LKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDV 141

Query: 206 SAYTSAIFGLAMNGHSIE--------------------------------AFELFENMKS 233
            +YT+ I G A  G+ IE                                A ELF+ M  
Sbjct: 142 VSYTALITGYASRGY-IESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMK 200

Query: 234 KGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLE 293
             + PD  +   V+SAC+  G +E G    HS  + HG    L     ++DL  + G +E
Sbjct: 201 TNVKPDESTMATVVSACAQSGSIELG-RQVHSWINDHGFGSNLKIVNALIDLYSKCGEVE 259

Query: 294 EAENFIASMPMKPDNVIWGTLLGA 317
            A   +  +  K D + W TL+G 
Sbjct: 260 TACELLEGLSNK-DVISWNTLIGG 282


>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
 gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
          Length = 1124

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/538 (37%), Positives = 301/538 (55%), Gaps = 39/538 (7%)

Query: 13   VKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKL----FDKM 68
            V  SL+  Y+ CG +  A+ VFDE      V W ++I  Y+  G++ E + +    F   
Sbjct: 587  VLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANG 646

Query: 69   PQRNDVSWNSILGGLVRF-----------------------------------GSVDDAC 93
             + +  +   +L    R                                    G +  A 
Sbjct: 647  MRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAR 706

Query: 94   RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153
             VF++M  +  V+W  ++ G+A NG P+EAL LF  MQ+  ++P+   +   LSAC +LG
Sbjct: 707  EVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLG 766

Query: 154  ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIF 213
            ALD G      +       + +L  ALIDMYAKCGS   A  VF     KD+  + + I 
Sbjct: 767  ALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMIL 826

Query: 214  GLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIK 273
            GL M GH   AF L   M+  G+  +  ++I +L +C+H G ++ G  YFH+M  ++ I 
Sbjct: 827  GLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHIS 886

Query: 274  PELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNM 333
            P ++HY CMVDLL RAGLL+EA   +  MPM  + VI G LLG C++HRN E+ + +   
Sbjct: 887  PRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQ 946

Query: 334  LIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLA 393
            LI  +  + G Y++LSNIY    + E+A ++R  M+ + +++ P CS +E +G VHEF  
Sbjct: 947  LILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRV 1006

Query: 394  GDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGL 453
            GD+SH  + +IY+  +E+  ++K  GY   T  VMFD+E+EEKE  + +HSEKLA+AF L
Sbjct: 1007 GDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNL 1066

Query: 454  ICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            + T PG  IR+ KN+R+CSDCH+A+KLVS++  R+I +RD   +H F DGSCSC +YW
Sbjct: 1067 LITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 1124



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 130/265 (49%), Gaps = 7/265 (2%)

Query: 53  VRNGEILEGLKLFDKMP-QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLI 111
           +R GE L    L  K+P   N     S+L    + G +  A RVF++MP  S V W  LI
Sbjct: 566 LRAGEQLHARSL--KLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALI 623

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK 171
           + +   G  +EA+ + R   +  + P+S   V +L+ACA++  L  G  V+   +++ + 
Sbjct: 624 TAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVA 683

Query: 172 LDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM 231
               +  A +D+Y KCG +  A +VF     KD  A+ + + G A NGH  EA +LF  M
Sbjct: 684 QSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAM 743

Query: 232 KSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM-FDVHGIKPELDHYACMVDLLGRAG 290
           +++G+ PD  +    LSAC+ LG ++ G      + +D     P L     ++D+  + G
Sbjct: 744 QAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLG--TALIDMYAKCG 801

Query: 291 LLEEAENFIASMPMKPDNVIWGTLL 315
              EA      M  K D ++W  ++
Sbjct: 802 STVEAWVVFQQM-RKKDIIVWNAMI 825



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 100/261 (38%), Gaps = 48/261 (18%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           +   A  VFV  + +  Y  CG +  AR VFD+    D V+W +M+ GY  NG   E L 
Sbjct: 679 QEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALD 738

Query: 64  LFDKMPQRN-----------------------------DVSW-----NSILGGLV----- 84
           LF  M                                  V W     N +LG  +     
Sbjct: 739 LFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYA 798

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
           + GS  +A  VF QM K+ ++ W  +I G    G  K A AL  +M+   ++ N    + 
Sbjct: 799 KCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIG 858

Query: 145 LLSACAQLGALDYGNWVYSYIQKK---CIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           LL +C   G +  G   +  + K      +++   C  ++D+ ++ G     +Q  H   
Sbjct: 859 LLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGC--MVDLLSRAG----LLQEAHQLV 912

Query: 202 DKDVSAYTSAIFGLAMNGHSI 222
           D       + I G  + G  I
Sbjct: 913 DDMPMPANAVILGALLGGCKI 933



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 12/158 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           MV  + F  +  +  +LI  Y+ CG   +A  VF +    D++ WN+MI G    G    
Sbjct: 777 MVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKI 836

Query: 61  GLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLI 111
              L  +M +     ND ++  +L      G + D  R F+ M K   +S     +  ++
Sbjct: 837 AFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMV 896

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
              ++ G  +EA  L  +M    +  N+ IL +LL  C
Sbjct: 897 DLLSRAGLLQEAHQLVDDMP---MPANAVILGALLGGC 931


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/551 (39%), Positives = 316/551 (57%), Gaps = 41/551 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V+K  F +DVFV  SL+  YS  G V DAR +FD+    D  SWN+MI+GY +NG   E
Sbjct: 19  LVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRGSWNAMISGYCQNGNAAE 78

Query: 61  GLKLFDKM-------------------PQRNDV--------------------SWNSILG 81
            L + D+M                    Q  D+                      N+++ 
Sbjct: 79  ALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHLYVIKHGLEFELFVSNALIN 138

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD-LEPNSA 140
              +FGS+  A +VF  + K  +VSW  LI+G+AQNG   EA+ ++  M+  + + PN  
Sbjct: 139 MYAKFGSLGHAQKVFGLLIK-DVVSWNTLITGYAQNGLASEAIEVYLLMEEHEEIIPNQG 197

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
             VS+L A + +GAL  G  ++  + K C+  D  +   LIDMY KCG +D A+ +F+  
Sbjct: 198 TWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTCLIDMYGKCGKLDDAISLFYQV 257

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
             K+   + + I    ++G   +A ELF  MK++ + PD I+++++LSACSH G V    
Sbjct: 258 PRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPDHITFVSLLSACSHSGLVSDAQ 317

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
           + F+ M + +GIKP L HY CMVDL GRAG LE A NFI  MP++PD   WG LL ACR+
Sbjct: 318 WCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFIKKMPIQPDASAWGALLNACRI 377

Query: 321 HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS 380
           H N E+G+     L E D  + G Y+LLSNIY    K E  ++VR   R R +++ PG S
Sbjct: 378 HGNIELGKHASERLFEVDSENVGYYVLLSNIYANVGKWEGVDDVRSLARDRGLRKNPGWS 437

Query: 381 LIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVI 440
            I L+  V  F  G+++H K +EIY+   ++  KIK  GY  +   V+ D+EE+EKE ++
Sbjct: 438 SIILNNKVDVFYTGNQTHPKCEEIYRELRDLTSKIKTIGYVPDFCFVLQDVEEDEKEHIL 497

Query: 441 GYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF 500
             HSE+LA+A+G+I T P + IRI KN+R+C DCH+  K +S + +R+I +RD   +HHF
Sbjct: 498 MGHSERLAIAYGIISTSPKTPIRIFKNLRVCGDCHTVTKFISIITEREIIVRDSSRFHHF 557

Query: 501 EDGSCSCLEYW 511
           + G+CSC +YW
Sbjct: 558 KGGTCSCGDYW 568


>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
          Length = 1100

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/538 (37%), Positives = 301/538 (55%), Gaps = 39/538 (7%)

Query: 13   VKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKL----FDKM 68
            V  SL+  Y+ CG +  A+ VFDE      V W ++I  Y+  G++ E + +    F   
Sbjct: 563  VLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANG 622

Query: 69   PQRNDVSWNSILGGLVRF-----------------------------------GSVDDAC 93
             + +  +   +L    R                                    G +  A 
Sbjct: 623  MRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAR 682

Query: 94   RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153
             VF++M  +  V+W  ++ G+A NG P+EAL LF  MQ+  ++P+   +   LSAC +LG
Sbjct: 683  EVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLG 742

Query: 154  ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIF 213
            ALD G      +       + +L  ALIDMYAKCGS   A  VF     KD+  + + I 
Sbjct: 743  ALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMIL 802

Query: 214  GLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIK 273
            GL M GH   AF L   M+  G+  +  ++I +L +C+H G ++ G  YFH+M  ++ I 
Sbjct: 803  GLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHIS 862

Query: 274  PELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNM 333
            P ++HY CMVDLL RAGLL+EA   +  MPM  + VI G LLG C++HRN E+ + +   
Sbjct: 863  PRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQ 922

Query: 334  LIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLA 393
            LI  +  + G Y++LSNIY    + E+A ++R  M+ + +++ P CS +E +G VHEF  
Sbjct: 923  LILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRV 982

Query: 394  GDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGL 453
            GD+SH  + +IY+  +E+  ++K  GY   T  VMFD+E+EEKE  + +HSEKLA+AF L
Sbjct: 983  GDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNL 1042

Query: 454  ICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            + T PG  IR+ KN+R+CSDCH+A+KLVS++  R+I +RD   +H F DGSCSC +YW
Sbjct: 1043 LITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 1100



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 130/265 (49%), Gaps = 7/265 (2%)

Query: 53  VRNGEILEGLKLFDKMP-QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLI 111
           +R GE L    L  K+P   N     S+L    + G +  A RVF++MP  S V W  LI
Sbjct: 542 LRAGEQLHARSL--KLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALI 599

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK 171
           + +   G  +EA+ + R   +  + P+S   V +L+ACA++  L  G  V+   +++ + 
Sbjct: 600 TAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVA 659

Query: 172 LDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM 231
               +  A +D+Y KCG +  A +VF     KD  A+ + + G A NGH  EA +LF  M
Sbjct: 660 QSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAM 719

Query: 232 KSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM-FDVHGIKPELDHYACMVDLLGRAG 290
           +++G+ PD  +    LSAC+ LG ++ G      + +D     P L     ++D+  + G
Sbjct: 720 QAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLG--TALIDMYAKCG 777

Query: 291 LLEEAENFIASMPMKPDNVIWGTLL 315
              EA      M  K D ++W  ++
Sbjct: 778 STVEAWVVFQQM-RKKDIIVWNAMI 801



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 100/261 (38%), Gaps = 48/261 (18%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           +   A  VFV  + +  Y  CG +  AR VFD+    D V+W +M+ GY  NG   E L 
Sbjct: 655 QEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALD 714

Query: 64  LFDKMPQRN-----------------------------DVSW-----NSILGGLV----- 84
           LF  M                                  V W     N +LG  +     
Sbjct: 715 LFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYA 774

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
           + GS  +A  VF QM K+ ++ W  +I G    G  K A AL  +M+   ++ N    + 
Sbjct: 775 KCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIG 834

Query: 145 LLSACAQLGALDYGNWVYSYIQKK---CIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           LL +C   G +  G   +  + K      +++   C  ++D+ ++ G     +Q  H   
Sbjct: 835 LLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGC--MVDLLSRAG----LLQEAHQLV 888

Query: 202 DKDVSAYTSAIFGLAMNGHSI 222
           D       + I G  + G  I
Sbjct: 889 DDMPMPANAVILGALLGGCKI 909



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 12/158 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           MV  + F  +  +  +LI  Y+ CG   +A  VF +    D++ WN+MI G    G    
Sbjct: 753 MVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKI 812

Query: 61  GLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLI 111
              L  +M +     ND ++  +L      G + D  R F+ M K   +S     +  ++
Sbjct: 813 AFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMV 872

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
              ++ G  +EA  L  +M    +  N+ IL +LL  C
Sbjct: 873 DLLSRAGLLQEAHQLVDDMP---MPANAVILGALLGGC 907


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/549 (37%), Positives = 315/549 (57%), Gaps = 40/549 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +  ++F  D+ + N ++  Y+ CG + +A+ +FD+    D+VSW  +I+GY ++G+  E 
Sbjct: 131 IQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEA 190

Query: 62  LKLFDKMP----QRNDVSWNSILGG----------------------------------- 82
           L LF KM     Q N+ + +S+L                                     
Sbjct: 191 LALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDM 250

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             R+  + +A  +FN +  +++VSW  LI+G A+ G  +  + LF +M     EP     
Sbjct: 251 YARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTY 310

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S+ +ACA  G+L+ G WV++++ K   +  + +   LIDMYAK GSI  A +VF     
Sbjct: 311 SSVFTACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVK 370

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           +D+ ++ S I G A +G   EA +LFE M    + P+ I++++VL+ACSH G +++G YY
Sbjct: 371 QDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYY 430

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F  M   H I+ ++ H+  +VDLLGRAG L EA  FI  MP+KP   +WG LLG+CR+H+
Sbjct: 431 FELM-KKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGSCRMHK 489

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           N ++G      + E D +  G ++LLSNIY    +  +A +VRK M++  +K+ P CS +
Sbjct: 490 NMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWV 549

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E++  VH F+A D SH   +EI + WE+I  KIK  GY  +T  V+F + ++++E  + Y
Sbjct: 550 EIENEVHVFVANDDSHPMREEIQRMWEKISGKIKEIGYVPDTSHVLFFMNQQDRELKLQY 609

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSEKLALAF ++ T PG  IRI KNIRIC DCHSA K  S+V  R+I +RD   +HHF  
Sbjct: 610 HSEKLALAFAVLKTPPGLTIRIKKNIRICGDCHSAFKFASRVLGREIIVRDTNRFHHFLH 669

Query: 503 GSCSCLEYW 511
           G CSC +YW
Sbjct: 670 GMCSCRDYW 678



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 94/202 (46%), Gaps = 5/202 (2%)

Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
           LEP   +   +L+ C  L  L  G  ++++IQ    + D +L   +++MYAKCGS++ A 
Sbjct: 101 LEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQ 160

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
            +F     KD+ ++T  I G + +G + EA  LF  M   G  P+  +  ++L A S  G
Sbjct: 161 DLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKA-SGTG 219

Query: 255 WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTL 314
             +      H+    +G    +   + ++D+  R   + EA+    S+  K + V W  L
Sbjct: 220 PSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAK-NVVSWNAL 278

Query: 315 LGACRVHRNAEMGQRIGNMLIE 336
           +     H     G+ +  + ++
Sbjct: 279 IAG---HARKGEGEHVMRLFLQ 297


>gi|226492710|ref|NP_001145953.1| uncharacterized protein LOC100279479 [Zea mays]
 gi|219885099|gb|ACL52924.1| unknown [Zea mays]
          Length = 530

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 217/530 (40%), Positives = 305/530 (57%), Gaps = 40/530 (7%)

Query: 21  YSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQR----NDVSW 76
           Y  CG V DAR VFD+    DVVSW  +I GY +N    E + L   M +     N  ++
Sbjct: 2   YCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTF 61

Query: 77  NSIL------GG-----------------------------LVRFGSVDDACRVFNQMPK 101
            S+L      GG                               R   +D A  VF+++  
Sbjct: 62  TSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVS 121

Query: 102 RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161
           ++ VSW  LI+GFA+    +  L  F EMQ            S+ SA A++GAL+ G WV
Sbjct: 122 KNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWV 181

Query: 162 YSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHS 221
           ++++ K   KL + +   ++ MYAK GS+  A +VF     +D+  + + +  LA  G  
Sbjct: 182 HAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLG 241

Query: 222 IEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYAC 281
            EA   FE ++  GI  + I++++VL+ACSH G V++G +YF  M D + ++PE+DHY  
Sbjct: 242 KEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMMKD-YNVQPEIDHYVS 300

Query: 282 MVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH 341
            VDLLGRAGLL+EA  F+  MPM+P   +WG LLGACR+H+NA+MGQ   + + E D + 
Sbjct: 301 FVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPDD 360

Query: 342 DGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKT 401
            G  +LL NIY  T K  +A  VRK M+   +K+ P CS ++++  VH F+A D +H K+
Sbjct: 361 TGPPVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTHPKS 420

Query: 402 QEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSV 461
            +IY+ WEEI  +IK  GY   T  V+  I E+E+ET + YHSEK+ALAF LI    G+ 
Sbjct: 421 GDIYRMWEEINMRIKKAGYVPNTAHVLLHINEQERETKLKYHSEKIALAFALINMPAGAS 480

Query: 462 IRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           IRI+KNIRIC DCHSA K VSKVFKR+I +RD   +HHF +GSCSC +YW
Sbjct: 481 IRIMKNIRICGDCHSAFKYVSKVFKREIVVRDTNRFHHFSEGSCSCGDYW 530



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 115/254 (45%), Gaps = 41/254 (16%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + VK ++  DV+V ++L+  Y+ C ++  A  VFD     + VSWN++I G+ R  +   
Sbjct: 83  LAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKADGET 142

Query: 61  GLKLFDKMPQRNDVS-----------------------W-----------------NSIL 80
            L  F +M QRN                          W                 N++L
Sbjct: 143 TLMKFAEM-QRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTML 201

Query: 81  GGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
           G   + GS+ DA +VF++M KR LV+W  +++  AQ G  KEA+A F E++   ++ N  
Sbjct: 202 GMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQI 261

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
             +S+L+AC+  G +  G   +  ++   ++ +     + +D+  + G +  A+      
Sbjct: 262 TFLSVLTACSHGGLVKEGKHYFDMMKDYNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKM 321

Query: 201 GDKDVSAYTSAIFG 214
             +  +A   A+ G
Sbjct: 322 PMEPTAAVWGALLG 335



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 81/158 (51%), Gaps = 15/158 (9%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K+      FV N+++  Y+  G + DAR VFD  D  D+V+WN+M+    + G   E 
Sbjct: 185 LIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEA 244

Query: 62  LKLFDKMP----QRNDVSWNSIL-----GGLVRFGS-VDDACRVFNQMPKRSLVSWVVLI 111
           +  F+++     Q N +++ S+L     GGLV+ G    D  + +N  P+  +  +V  +
Sbjct: 245 VAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMMKDYNVQPE--IDHYVSFV 302

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
               + G  KEAL    +M    +EP +A+  +LL AC
Sbjct: 303 DLLGRAGLLKEALIFVFKMP---MEPTAAVWGALLGAC 337



 Score = 43.9 bits (102), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 34/72 (47%)

Query: 183 MYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSIS 242
           MY KCG++  A  VF     +DV ++T  I G A N    EA  L  +M      P+  +
Sbjct: 1   MYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFT 60

Query: 243 YIAVLSACSHLG 254
           + ++L A    G
Sbjct: 61  FTSLLKATGACG 72


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/547 (39%), Positives = 317/547 (57%), Gaps = 38/547 (6%)

Query: 3    VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
            V+     D  V ++ I  Y  CG + DAR +FD+     V +WN+MI G  +     E L
Sbjct: 551  VETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREAL 610

Query: 63   KLFDKMPQRN-------------------------DVSWNSILGGLV------------- 84
             LF +M +                           +V  ++   GLV             
Sbjct: 611  SLFLQMQREGFIPDATTFINILSANVDEEALEWVKEVHSHATDAGLVDLRVGNALVHTYS 670

Query: 85   RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
            + G+V  A +VF+ M +R++ +W ++I G AQ+G   +A + F +M    + P++   VS
Sbjct: 671  KCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVS 730

Query: 145  LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
            +LSACA  GAL++   V+++     +  D  +  AL+ MYAKCGSID A  VF    ++D
Sbjct: 731  ILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDMVERD 790

Query: 205  VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
            V ++T  I GLA +G  +EA + F  MKS+G  P+  SY+AVL+ACSH G V++G   F 
Sbjct: 791  VFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFL 850

Query: 265  SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
            SM   +GI+P ++HY CMVDLLGRAGLLEEAE FI +MP++PD+  WG LLGAC  + N 
Sbjct: 851  SMTQDYGIEPTMEHYTCMVDLLGRAGLLEEAELFILNMPIEPDDAPWGALLGACVTYGNL 910

Query: 325  EMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIEL 384
            EM +      ++        Y+LLSNIY  T K E    VR  M+++ I++ PG S IE+
Sbjct: 911  EMAEFAAKERLKLKPKSASTYVLLSNIYAATGKWEQKLLVRSMMQRKGIRKEPGRSWIEV 970

Query: 385  DGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHS 444
            D  +H F+ GD SH +++EIY    ++++++K  GY  +TR V+ + ++E KE  +  HS
Sbjct: 971  DNRIHSFVVGDTSHPESKEIYAQLNDLIERLKAKGYVPDTRLVLRNTDQEHKEQALCSHS 1030

Query: 445  EKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGS 504
            EKLA+ +GL+ T+    IR+ KN+R+CSDCH+A K +SK+  R+I  RD K +HHF+DG 
Sbjct: 1031 EKLAIVYGLMHTQSKDPIRVYKNLRVCSDCHTATKFISKITGREIVARDAKRFHHFKDGV 1090

Query: 505  CSCLEYW 511
            CSC +YW
Sbjct: 1091 CSCGDYW 1097



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 108/360 (30%), Positives = 180/360 (50%), Gaps = 49/360 (13%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K+    +++V N L++ Y  CGR++ AR VFD+    ++  W +MI GY   G   + 
Sbjct: 144 IIKSGMEQNLYVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDA 203

Query: 62  LKLFDKMPQR----NDVSWNSILGG----------------------------------- 82
           ++++DKM Q     N++++ SIL                                     
Sbjct: 204 MRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNM 263

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
            V+ GS++DA  +F++M +R+++SW V+I G A  GR +EA  LF +MQ     PNS   
Sbjct: 264 YVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTY 323

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           VS+L+A A  GAL++   V+S+     + LD  +  AL+ MYAK GSID A  VF    +
Sbjct: 324 VSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTE 383

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA-----CSHLGWVE 257
           +D+ ++T  I GLA +G   EAF LF  M+  G  P+  +Y+++L+A      S L WV+
Sbjct: 384 RDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALEWVK 443

Query: 258 KGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
                 H   +  G   +L     ++ +  + G +++A      M  + D + W  ++G 
Sbjct: 444 ----VVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDR-DVISWNAMMGG 498



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 105/357 (29%), Positives = 178/357 (49%), Gaps = 48/357 (13%)

Query: 7   FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFD 66
           F  D+ + N+LI  Y+ CG + DAR VFD   D DV+SWN+M+ G  +NG   E   +F 
Sbjct: 454 FISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFL 513

Query: 67  KMPQR-------------------------NDVSWNSILGGL--------------VRFG 87
           +M Q                          N+V  +++  GL              +R G
Sbjct: 514 QMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCG 573

Query: 88  SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLS 147
           S+DDA  +F+++  R + +W  +I G AQ    +EAL+LF +MQ     P++   +++LS
Sbjct: 574 SIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILS 633

Query: 148 ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSA 207
           A     AL++   V+S+     + +D  +  AL+  Y+KCG++  A QVF    +++V+ 
Sbjct: 634 ANVDEEALEWVKEVHSHATDAGL-VDLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTT 692

Query: 208 YTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG---WVEKGFYYFH 264
           +T  I GLA +G   +AF  F  M  +GI PD+ +Y+++LSAC+  G   WV++     H
Sbjct: 693 WTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKE----VH 748

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           +     G+  +L     +V +  + G +++A +    M ++ D   W  ++G    H
Sbjct: 749 NHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDM-VERDVFSWTVMIGGLAQH 804



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 109/365 (29%), Positives = 175/365 (47%), Gaps = 49/365 (13%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++++ F  DV V+ +L+  Y  CG + DA+ +FD+  + +V+SW  MI G    G   E 
Sbjct: 245 IIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEA 304

Query: 62  LKLFDKMPQR----NDVSWNSIL---------------------GGLV------------ 84
             LF +M +     N  ++ SIL                      GL             
Sbjct: 305 FHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHM 364

Query: 85  --RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + GS+DDA  VF+ M +R + SW V+I G AQ+GR +EA +LF +MQ     PN    
Sbjct: 365 YAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTY 424

Query: 143 VSLL--SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
           +S+L  SA A   AL++   V+ + ++     D  +  ALI MYAKCGSID A  VF   
Sbjct: 425 LSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGM 484

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS---ACSHLGWVE 257
            D+DV ++ + + GLA NG   EAF +F  M+ +G+ PDS +Y+++L+   +   L WV 
Sbjct: 485 CDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVN 544

Query: 258 KGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
           +     H      G+  +    +  + +  R G +++A      + ++     W  ++G 
Sbjct: 545 E----VHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVR-HVTTWNAMIGG 599

Query: 318 CRVHR 322
               R
Sbjct: 600 AAQQR 604



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 141/267 (52%), Gaps = 11/267 (4%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136
           N +L   +R G +  A +VF+++ K+++  W  +I G+A+ G  ++A+ ++ +M+    +
Sbjct: 157 NKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQ 216

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
           PN    +S+L AC     L +G  ++++I +   + D  +  AL++MY KCGSI+ A  +
Sbjct: 217 PNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLI 276

Query: 197 FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG-- 254
           F    +++V ++T  I GLA  G   EAF LF  M+ +G  P+S +Y+++L+A +  G  
Sbjct: 277 FDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGAL 336

Query: 255 -WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGT 313
            WV++     HS     G+  +L     +V +  ++G +++A      M  + D   W  
Sbjct: 337 EWVKE----VHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTER-DIFSWTV 391

Query: 314 LLGACRVHRNAEMGQRIGNMLIESDQN 340
           ++G    H     GQ   ++ ++  +N
Sbjct: 392 MIGGLAQHGR---GQEAFSLFLQMQRN 415



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 99/202 (49%), Gaps = 10/202 (4%)

Query: 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
            K+A+A+ +      +  +S   V++L  C +   +     V+  I K  ++ +  +   
Sbjct: 99  AKDAVAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANK 158

Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
           L+ +Y +CG +  A QVF     K++  +T+ I G A  GH+ +A  +++ M+ +   P+
Sbjct: 159 LLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPN 218

Query: 240 SISYIAVLSACS---HLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAE 296
            I+Y+++L AC    +L W +K     H+     G + ++     +V++  + G +E+A+
Sbjct: 219 EITYLSILKACCCPVNLKWGKK----IHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQ 274

Query: 297 NFIASMPMKPDNVI-WGTLLGA 317
                M  +  NVI W  ++G 
Sbjct: 275 LIFDKMVER--NVISWTVMIGG 294


>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 196/509 (38%), Positives = 314/509 (61%), Gaps = 7/509 (1%)

Query: 6   SFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLF 65
           SF +      SL++  S+  ++    ++F   +DL V   N++I+ YV+ G +    K+F
Sbjct: 112 SFTFSALF--SLLKNPSLGSQLHLHAFLFGFVNDLYV--GNTIIHMYVKFGVLDCARKVF 167

Query: 66  DKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALA 125
           D+MP R+ V+W  ++    R G +D AC +F  +P + +V+W  +++G++QN  PK+AL 
Sbjct: 168 DEMPHRDVVTWTELIVAYARSGDMDSACELFVGLPVKDMVAWTSMVTGYSQNAMPKKALQ 227

Query: 126 LFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDS--ILCAALIDM 183
            FR+M+   +  +   LV  +SACAQLG   Y +W+    +       S   + +ALIDM
Sbjct: 228 FFRKMREAGVVTDEITLVGAISACAQLGVSGYADWIREIAESSRFGSGSNVFVGSALIDM 287

Query: 184 YAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISY 243
           Y+KCG+++ A  VF    + +V +Y+S I G A++G +  A +LF  M   GI P+ +++
Sbjct: 288 YSKCGNVEEAYNVFKGMKEMNVFSYSSMIVGFAVHGRARSAIKLFYEMLENGIKPNHVTF 347

Query: 244 IAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP 303
           + + +ACSH G VE+G   F +M + +G+ P  DHYACM DLLGRAG LE+A   + +MP
Sbjct: 348 VGLFTACSHAGMVEQGQQLFGAMKECYGVSPTADHYACMADLLGRAGHLEKALQLVQTMP 407

Query: 304 MKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEE 363
           M+P+  +WG LLGA  +H N ++ +     L E + ++ G Y+LLS  Y    K ++   
Sbjct: 408 MEPNGGVWGALLGASHIHGNPDVAEIASRSLFELEPDNLGNYLLLSKTYALAAKWDDVSR 467

Query: 364 VRKTMRKRKIKRAPGCSLIEL-DGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNV 422
           VRK MR++++++ PGCS +E  +G++HEF AGD  H +  EI +  +++++++K  GY  
Sbjct: 468 VRKLMREKQLRKNPGCSWVEAKNGIIHEFFAGDVKHPEINEIKKALDDLLQRLKCTGYQP 527

Query: 423 ETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVS 482
           +  SV +DI++E K  ++  HSEKLALA+GL+ T  GS I+I+KN+RIC DCH  M   S
Sbjct: 528 KLNSVPYDIDDEGKRCLLVSHSEKLALAYGLLSTDAGSTIKIMKNLRICEDCHIVMCGAS 587

Query: 483 KVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           K+  RKI +RD   +HHF +G+CSC  +W
Sbjct: 588 KLTGRKIIVRDNMRFHHFLNGACSCNNFW 616



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 103/242 (42%), Gaps = 39/242 (16%)

Query: 95  VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLS------- 147
           +F+Q+   +   +  LI  +A+NG    ++ L+  M + ++ P S    +L S       
Sbjct: 68  LFSQVHSPNPFLYSALIRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFSALFSLLKNPSL 127

Query: 148 -ACAQLGALDYGN----WVYSYIQKKCIKLDSILCA----------------ALIDMYAK 186
            +   L A  +G     +V + I    +K   + CA                 LI  YA+
Sbjct: 128 GSQLHLHAFLFGFVNDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVAYAR 187

Query: 187 CGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAV 246
            G +D A ++F     KD+ A+TS + G + N    +A + F  M+  G+  D I+ +  
Sbjct: 188 SGDMDSACELFVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLVGA 247

Query: 247 LSACSHLG------WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
           +SAC+ LG      W+ +      S F   G    +   + ++D+  + G +EEA N   
Sbjct: 248 ISACAQLGVSGYADWIRE--IAESSRF---GSGSNVFVGSALIDMYSKCGNVEEAYNVFK 302

Query: 301 SM 302
            M
Sbjct: 303 GM 304


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/534 (37%), Positives = 312/534 (58%), Gaps = 32/534 (5%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DV    ++I  Y   GR+ +AR +FDE    +VV+W +M++GY RNG++    KLF+ MP
Sbjct: 178 DVVAVTNMIGGYCEEGRLDEARALFDEMPKRNVVTWTAMVSGYARNGKVDVARKLFEVMP 237

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV------------------------ 105
           +RN+VSW ++L G    G + +A  +F+ MP + +V                        
Sbjct: 238 ERNEVSWTAMLLGYTHSGRMREASSLFDAMPVKPVVVCNEMIMGFGLNGEVDKARRVFKG 297

Query: 106 -------SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
                  +W  +I  + + G   EAL LFR MQ   L  N   L+S+LS C  L +LD+G
Sbjct: 298 MKERDNGTWSAMIKVYERKGYELEALGLFRRMQREGLALNFPSLISVLSVCVSLASLDHG 357

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
             V++ + +     D  + + LI MY KCG++  A QVF+ +  KDV  + S I G + +
Sbjct: 358 KQVHAQLVRSEFDQDLYVASVLITMYVKCGNLVRAKQVFNRFPLKDVVMWNSMITGYSQH 417

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDH 278
           G   EA  +F +M S G+ PD +++I VLSACS+ G V++G   F +M   + ++P ++H
Sbjct: 418 GLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSYSGKVKEGLELFETMKCKYQVEPGIEH 477

Query: 279 YACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338
           YAC+VDLLGRA  + EA   +  MPM+PD ++WG LLGACR H   ++ +     L + +
Sbjct: 478 YACLVDLLGRADQVNEAMKLVEKMPMEPDAIVWGALLGACRTHMKLDLAEVAVEKLAQLE 537

Query: 339 QNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGD-RS 397
             + G Y+LLSN+Y    +  + E +R+ ++ R + + PGCS IE++  VH F  GD + 
Sbjct: 538 PKNAGPYVLLSNMYAYKGRWRDVEVLREKIKARSVTKLPGCSWIEVEKKVHMFTGGDSKG 597

Query: 398 HEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTK 457
           H +   I +  E++   ++  GY  +   V+ D++EEEK   +GYHSEKLA+A+GL+   
Sbjct: 598 HPEQPIIMKMLEKLGGLLREAGYCPDGSFVLHDVDEEEKTHSLGYHSEKLAVAYGLLKVP 657

Query: 458 PGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            G  IR++KN+R+C DCHSA+KL++KV  R+I +RD   +HHF+DG CSC +YW
Sbjct: 658 EGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIILRDANRFHHFKDGHCSCKDYW 711



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 163/334 (48%), Gaps = 33/334 (9%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDV 74
           N LI  +   G + +AR VFD   D +VVSW SM+ GYVRNG++ E  +LF  MP +N V
Sbjct: 90  NGLISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNVV 149

Query: 75  SWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD 134
           SW  +LGGL++ G VDDA ++F+ MP++ +V+   +I G+ + GR  EA ALF EM    
Sbjct: 150 SWTVMLGGLLQEGRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARALFDEMP--- 206

Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVY----------------SYIQKKCIKLDS---- 174
            + N     +++S  A+ G +D    ++                 Y     ++  S    
Sbjct: 207 -KRNVVTWTAMVSGYARNGKVDVARKLFEVMPERNEVSWTAMLLGYTHSGRMREASSLFD 265

Query: 175 -------ILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFEL 227
                  ++C  +I  +   G +D A +VF    ++D   +++ I      G+ +EA  L
Sbjct: 266 AMPVKPVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGL 325

Query: 228 FENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLG 287
           F  M+ +G++ +  S I+VLS C  L  ++ G    H+         +L   + ++ +  
Sbjct: 326 FRRMQREGLALNFPSLISVLSVCVSLASLDHG-KQVHAQLVRSEFDQDLYVASVLITMYV 384

Query: 288 RAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           + G L  A+      P+K D V+W +++     H
Sbjct: 385 KCGNLVRAKQVFNRFPLK-DVVMWNSMITGYSQH 417



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 152/302 (50%), Gaps = 24/302 (7%)

Query: 18  IQFYSVCGRVRDARWVFDESD--DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVS 75
           I  Y+  G++  AR VFDE+      V SWN+M+  Y    +  E L LF+KMPQRN VS
Sbjct: 29  IACYARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQRNTVS 88

Query: 76  WNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDL 135
           WN ++ G ++ G + +A RVF+ MP R++VSW  ++ G+ +NG   EA  LF  M   ++
Sbjct: 89  WNGLISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNV 148

Query: 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ 195
              + +L  LL    Q G +D    ++  + +K    D +    +I  Y + G +D A  
Sbjct: 149 VSWTVMLGGLL----QEGRVDDARKLFDMMPEK----DVVAVTNMIGGYCEEGRLDEARA 200

Query: 196 VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGW 255
           +F     ++V  +T+ + G A NG    A +LFE M  +    + +S+ A+L   +H G 
Sbjct: 201 LFDEMPKRNVVTWTAMVSGYARNGKVDVARKLFEVMPER----NEVSWTAMLLGYTHSGR 256

Query: 256 VEKGFYYFHSMFDVHGIKPELDHYAC--MVDLLGRAGLLEEAENFIASMPMKPDNVIWGT 313
           + +      S+FD   +KP +    C  M+   G  G +++A      M  + DN  W  
Sbjct: 257 MREA----SSLFDAMPVKPVV---VCNEMIMGFGLNGEVDKARRVFKGMKER-DNGTWSA 308

Query: 314 LL 315
           ++
Sbjct: 309 MI 310



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 123/222 (55%), Gaps = 8/222 (3%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDV 74
           N+++  Y    + R+A  +F++    + VSWN +I+G+++NG + E  ++FD MP RN V
Sbjct: 59  NAMVAAYFEARQPREALLLFEKMPQRNTVSWNGLISGHIKNGMLSEARRVFDTMPDRNVV 118

Query: 75  SWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD 134
           SW S++ G VR G V +A R+F  MP +++VSW V++ G  Q GR  +A  LF  M   D
Sbjct: 119 SWTSMVRGYVRNGDVAEAERLFWHMPHKNVVSWTVMLGGLLQEGRVDDARKLFDMMPEKD 178

Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
           +      + +++    + G LD    ++  + K+ +    +   A++  YA+ G +D+A 
Sbjct: 179 V----VAVTNMIGGYCEEGRLDEARALFDEMPKRNV----VTWTAMVSGYARNGKVDVAR 230

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGI 236
           ++F    +++  ++T+ + G   +G   EA  LF+ M  K +
Sbjct: 231 KLFEVMPERNEVSWTAMLLGYTHSGRMREASSLFDAMPVKPV 272



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 12/164 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +V++ F  D++V + LI  Y  CG +  A+ VF+     DVV WNSMI GY ++G   E 
Sbjct: 364 LVRSEFDQDLYVASVLITMYVKCGNLVRAKQVFNRFPLKDVVMWNSMITGYSQHGLGEEA 423

Query: 62  LKLFDKM----PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLIS 112
           L +F  M       +DV++  +L      G V +   +F  M  +  V      +  L+ 
Sbjct: 424 LNVFHDMCSSGVPPDDVTFIGVLSACSYSGKVKEGLELFETMKCKYQVEPGIEHYACLVD 483

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALD 156
              +  +  EA+ L  +M    +EP++ +  +LL AC     LD
Sbjct: 484 LLGRADQVNEAMKLVEKMP---MEPDAIVWGALLGACRTHMKLD 524


>gi|359495686|ref|XP_003635058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Vitis vinifera]
          Length = 540

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 199/511 (38%), Positives = 320/511 (62%), Gaps = 10/511 (1%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNG-----EILEGLKL 64
           ++F+ N++I+ YS+      A  ++ +   L  +S NS   G+V N       + EG +L
Sbjct: 31  NLFMWNTIIRGYSISDSPISAIALYKDMF-LCGISPNSYTFGFVLNACCKLLRLCEGQEL 89

Query: 65  FDKMPQRNDVSWNSILGGLVRF----GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
             ++ +        +L GL++     G +D AC +F++MP+    SW  ++SG++QNG+ 
Sbjct: 90  HSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYSQNGQA 149

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
            E L L REMQ+ ++  ++  L S++  C  LG LD G WV+SYI K+ +K+D +L  AL
Sbjct: 150 VETLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDLGKWVHSYIDKEGVKIDVVLGTAL 209

Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           + MY+KCGS+D A++VF    ++DV+ ++  I G A++GH  +A +LF+ MK   I P+ 
Sbjct: 210 VGMYSKCGSLDNALKVFQGMAERDVTTWSIMIAGYAIHGHDEKALQLFDAMKRSKIIPNC 269

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
           +++ +VLSA SH G VEKG   F +M+  + I P++ HY CMVDL  RAG++  A  FI 
Sbjct: 270 VTFTSVLSAYSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQ 329

Query: 301 SMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGEN 360
           +MP++P+ V+W TLLGAC+ H    +G+ I   +++ D +    Y+ +SN+Y    +  +
Sbjct: 330 TMPIEPNVVLWRTLLGACKTHGYKGLGEHISRKILKLDPSSPENYVFVSNVYASLGRWSS 389

Query: 361 AEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGY 420
             +VR  M+++  K+  G S IE++ +VH+F+ G+ SH K ++IY    ++ +K+K  G+
Sbjct: 390 VCQVRSLMKEKAPKKQHGWSSIEINFMVHKFIMGEESHPKREKIYGMLHQMARKLKQVGH 449

Query: 421 NVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKL 480
              T  V+ DI+EEEKE  +G HSE+LA+A+GL+ T  GS IRIVKN+R C DCH  +KL
Sbjct: 450 VASTVDVLHDIDEEEKEYALGLHSERLAIAYGLLHTPNGSPIRIVKNLRACRDCHEVIKL 509

Query: 481 VSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           +S+V+ R+I +RDR  +HHF +  CSC +YW
Sbjct: 510 ISEVYNREIILRDRVCFHHFRERGCSCNDYW 540



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 120/239 (50%), Gaps = 2/239 (0%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           G V  A  +F+     +L  W  +I G++ +  P  A+AL+++M    + PNS     +L
Sbjct: 15  GHVAYAHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTFGFVL 74

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
           +AC +L  L  G  ++S I K  +  ++ L   LI +YA CG +D A  +F    + D +
Sbjct: 75  NACCKLLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEPDSA 134

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
           ++++ + G + NG ++E  +L   M+++ +S D+ +  +V+  C  LG ++ G  + HS 
Sbjct: 135 SWSTMVSGYSQNGQAVETLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDLG-KWVHSY 193

Query: 267 FDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAE 325
            D  G+K ++     +V +  + G L+ A      M  + D   W  ++    +H + E
Sbjct: 194 IDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAER-DVTTWSIMIAGYAIHGHDE 251



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 114/240 (47%), Gaps = 44/240 (18%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +VK    ++  + N LI+ Y+ CG +  A  +FDE  + D  SW++M++GY +NG+ +E 
Sbjct: 93  IVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYSQNGQAVET 152

Query: 62  LKLFDKMPQRN--------------------------------------DVSWNSILGGL 83
           LKL  +M   N                                      DV   + L G+
Sbjct: 153 LKLLREMQAENVSSDAFTLASVVGVCGDLGVLDLGKWVHSYIDKEGVKIDVVLGTALVGM 212

Query: 84  V-RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + GS+D+A +VF  M +R + +W ++I+G+A +G  ++AL LF  M+   + PN    
Sbjct: 213 YSKCGSLDNALKVFQGMAERDVTTWSIMIAGYAIHGHDEKALQLFDAMKRSKIIPNCVTF 272

Query: 143 VSLLSACAQLGALDYGNWVYSYI---QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
            S+LSA +  G ++ G+ ++  +    K   ++    C  ++D++ + G +  A +   +
Sbjct: 273 TSVLSAYSHSGLVEKGHQIFETMWTEYKITPQIKHYGC--MVDLFCRAGMVGHAHKFIQT 330


>gi|356557795|ref|XP_003547196.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Glycine max]
          Length = 661

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/545 (38%), Positives = 320/545 (58%), Gaps = 58/545 (10%)

Query: 6   SFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLF 65
           S+AY+VF   + +  Y        A  VF    + +V +WN+M  GY  +      L+ +
Sbjct: 70  SYAYNVF---TWVLSY--------AYNVFTMIHNPNVFTWNTMTRGYAESDNPSPALRFY 118

Query: 66  DKM------PQRNDVSW---------------------------------NSILGGLVRF 86
            +M      P  +   +                                 NS+L      
Sbjct: 119 RQMIVSRIEPDTHTYPFLLKAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAAC 178

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           G  + A  VF  M  R LV+ + +I+GFA NGRP EAL LFREM +  +EP+   +VSLL
Sbjct: 179 GDTESAHNVFELMRDRDLVAXISVINGFALNGRPSEALTLFREMSAEGVEPDGFTVVSLL 238

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
           SA A+LGAL+ G  V+ Y+ K  ++ +S +  +L+D+YAKC +I           +++  
Sbjct: 239 SASAELGALELGRRVHVYLLKVGLRENSHVTNSLLDLYAKCDAI--------WEXERNAV 290

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
           ++TS I GLA+NG   EA ELF  M+ +G+ P  I+++ VL ACSH G +++GF YF  M
Sbjct: 291 SWTSLIVGLAVNGFGEEALELFREMEGQGLVPSEITFVGVLYACSHCGMLDEGFDYFRRM 350

Query: 267 FDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEM 326
            +  GI P ++HY CMVDLL RAGL+++A  +I +MP++P+ V W TLLGAC +H +  +
Sbjct: 351 KEEFGIMPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVTWRTLLGACTIHGHLGL 410

Query: 327 GQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDG 386
           G+   + L++ +  H G Y+LLSN+Y    +  + + +R++M K  +K+  G SL+EL  
Sbjct: 411 GETARSHLLKLEPKHSGDYVLLSNLYTSECRWADVQLIRRSMLKDGVKKTSGYSLVELGN 470

Query: 387 VVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEK 446
            V+EF  G+RSH ++Q++Y   E+I + +K  GY   T +V+ DIEEEEKE  + YHSEK
Sbjct: 471 RVYEFTMGNRSHPQSQDVYALLEKITELLKLEGYVPHTANVLADIEEEEKEQALSYHSEK 530

Query: 447 LALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCS 506
            A+AF  + T PG+ IR++KN+R+C+DCH A+KL++KV+ R+I IRDR  +HHF  GSCS
Sbjct: 531 XAIAFMRLNTAPGTTIRVMKNLRVCADCHMAIKLMAKVYDREIVIRDRGRFHHFRGGSCS 590

Query: 507 CLEYW 511
           C +YW
Sbjct: 591 CKDYW 595



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 126/294 (42%), Gaps = 69/294 (23%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + ++N F   VFV+NSL+  Y+ CG    A  VF+   D D+V+  S+ING+  NG   E
Sbjct: 155 VTIRNGFESLVFVQNSLLHIYAACGDTESAHNVFELMRDRDLVAXISVINGFALNGRPSE 214

Query: 61  GLKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPK--------------- 101
            L LF +M     + +  +  S+L      G+++   RV   + K               
Sbjct: 215 ALTLFREMSAEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLRENSHVTNSLLD 274

Query: 102 ------------RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
                       R+ VSW  LI G A NG  +EAL LFREM+   L P+    V +L AC
Sbjct: 275 LYAKCDAIWEXERNAVSWTSLIVGLAVNGFGEEALELFREMEGQGLVPSEITFVGVLYAC 334

Query: 150 AQLGALDYGNWVYSYIQKKCIKLDSI-LCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAY 208
           +  G LD G   +  ++++   +  I     ++D+ ++ G +                  
Sbjct: 335 SHCGMLDEGFDYFRRMKEEFGIMPRIEHYGCMVDLLSRAGLVK----------------- 377

Query: 209 TSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS---HLGWVEKG 259
                         +A+E  +NM    + P+++++  +L AC+   HLG  E  
Sbjct: 378 --------------QAYEYIQNMP---VQPNAVTWRTLLGACTIHGHLGLGETA 414


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/481 (40%), Positives = 298/481 (61%)

Query: 31  RWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVD 90
           + V + + D+ +   N++I  Y + G++    ++F+KMP+R+ VSWN IL G V    +D
Sbjct: 317 KTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMD 376

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           +A   FN+MP+++++SW+++ISG AQ G  +EAL  F  M+    EP        + +C+
Sbjct: 377 EAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCS 436

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
            LG+L +G  +++ + +   +       ALI MYA+CG +D A  +F +    D  ++ +
Sbjct: 437 VLGSLKHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAISWNA 496

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I  L  +G   +A ELFE M  +GI PD IS++ V+SACSH G V++G  YF SM +V+
Sbjct: 497 MIAALGQHGQGTQAIELFEEMLKEGILPDRISFLTVISACSHAGLVKEGRKYFDSMHNVY 556

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
           G+ P+ +HYA ++DLL RAG   EA+  + SMP +P   IW  LL  CR+H N ++G   
Sbjct: 557 GVNPDEEHYARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAGCRIHGNIDLGIEA 616

Query: 331 GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHE 390
              L E    HDG Y+LLSN+Y    +  +  +VRK MR R +K+ PGCS IE++  VH 
Sbjct: 617 AERLFELKPQHDGTYVLLSNMYAVAGQWNDMAKVRKLMRDRGVKKEPGCSWIEVENKVHS 676

Query: 391 FLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALA 450
           FL GD +H + ++IY + E++V +++  GY  +T+ V+ D+E + KE  +  HSEKLA+A
Sbjct: 677 FLVGDANHPEVRQIYNYLEQLVLEMRKIGYVPDTKCVLHDVESDLKEHELSTHSEKLAVA 736

Query: 451 FGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEY 510
           +G +    G+ +R+ KN+RIC DCH+A K +SKV  R+I +RD K +HHF DG CSC +Y
Sbjct: 737 YGFMKLPHGATVRVFKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDY 796

Query: 511 W 511
           W
Sbjct: 797 W 797



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 142/320 (44%), Gaps = 46/320 (14%)

Query: 46  NSMINGYVRNGE---------ILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVF 96
           N++I+ YV+            + E  KLFD+MP R+++SW +I+ G V+   +D A    
Sbjct: 187 NALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFL 246

Query: 97  NQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALD 156
           N   K+  V+W  +ISG+A  G   EA  +FR+M    ++ +     S++S CA  G   
Sbjct: 247 NGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFR 306

Query: 157 YGNWVYSYIQKKCIKLDSILCA----ALIDMYAKCGSIDLAMQVFHSYGDKD-------V 205
            G  +++Y  K        +      ALI  Y KCG +D+A ++F+   ++D       +
Sbjct: 307 LGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIIL 366

Query: 206 SAYTSA------------------------IFGLAMNGHSIEAFELFENMKSKGISPDSI 241
           S Y +                         I GLA  G + EA + F  MK +G  P   
Sbjct: 367 SGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDY 426

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
           ++   + +CS LG ++ G    H+    +G +  L     ++ +  R G+++ A     +
Sbjct: 427 AFAGAIISCSVLGSLKHG-RQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFIN 485

Query: 302 MPMKPDNVIWGTLLGACRVH 321
           MP   D + W  ++ A   H
Sbjct: 486 MPCV-DAISWNAMIAALGQH 504



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 74/361 (20%), Positives = 132/361 (36%), Gaps = 80/361 (22%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++ + F     + N LI  YS   ++  AR++FDE    D+V+  ++I  Y   G++   
Sbjct: 39  MIASGFQPRGHILNRLIDIYSKSSKLNYARYLFDEIPQPDIVARTTLIAAYSAAGDLKLS 98

Query: 62  LKLFDKMP--QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGR 119
            K+F   P   R+ V +N+                               +I+ ++ N  
Sbjct: 99  RKIFSDTPLGMRDSVFYNA-------------------------------MITAYSHNHD 127

Query: 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALD-YGNWVYSYIQKKCIKLDSILCA 178
              A+ LF +MQ  +  P++    S+L A A +   + +   ++  + K      + +  
Sbjct: 128 GHAAIELFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLN 187

Query: 179 ALIDMYAKC----------------------------------------GSIDLAMQVFH 198
           ALI  Y KC                                          +D A +  +
Sbjct: 188 ALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLN 247

Query: 199 SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEK 258
               K   A+ + I G A  G  +EAFE+F  M    I  D  ++ +V+S C++ G    
Sbjct: 248 GTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRL 307

Query: 259 GFYYFHSMFDVHGIKPELDHYA----CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTL 314
           G    H+ F      P  D        ++    + G ++ A+     MP + D V W  +
Sbjct: 308 G-KEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPER-DLVSWNII 365

Query: 315 L 315
           L
Sbjct: 366 L 366



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 81/168 (48%), Gaps = 16/168 (9%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VV+  +   +   N+LI  Y+ CG V  A  +F     +D +SWN+MI    ++G+  + 
Sbjct: 451 VVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAISWNAMIAALGQHGQGTQA 510

Query: 62  LKLFDKM------PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVL 110
           ++LF++M      P R  +S+ +++      G V +  + F+ M     V+     +  +
Sbjct: 511 IELFEEMLKEGILPDR--ISFLTVISACSHAGLVKEGRKYFDSMHNVYGVNPDEEHYARI 568

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
           I    + G+  EA  +   M+S+  EP + I  +LL+ C   G +D G
Sbjct: 569 IDLLCRAGKFSEAKEV---MESMPFEPGAPIWEALLAGCRIHGNIDLG 613



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 63/149 (42%), Gaps = 11/149 (7%)

Query: 118 GRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILC 177
            RP  A      M +   +P   IL  L+   ++   L+Y  +++  I +     D +  
Sbjct: 32  ARPVHA-----HMIASGFQPRGHILNRLIDIYSKSSKLNYARYLFDEIPQP----DIVAR 82

Query: 178 AALIDMYAKCGSIDLAMQVFH--SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG 235
             LI  Y+  G + L+ ++F     G +D   Y + I   + N     A ELF +M+   
Sbjct: 83  TTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFCDMQRDN 142

Query: 236 ISPDSISYIAVLSACSHLGWVEKGFYYFH 264
             PD+ ++ +VL A + +   EK     H
Sbjct: 143 FRPDNYTFTSVLGALALVAEKEKHCQQLH 171


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 199/543 (36%), Positives = 317/543 (58%), Gaps = 42/543 (7%)

Query: 10   DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
            D FV  +LI  YS  G++ +A ++     D D+ SWN+++ GY+++ +  + L+ F  M 
Sbjct: 1032 DSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMH 1091

Query: 70   Q--------------------------------------RNDVSWNS--ILGGLVRFGSV 89
            +                                       ND+ W S  +L   ++ G +
Sbjct: 1092 EMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDL-WVSSGVLDMYIKCGDM 1150

Query: 90   DDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
             +A  +F ++ +   V+W  +ISG+ +NG    AL+++  M+   ++P+     +L+ A 
Sbjct: 1151 PNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKAS 1210

Query: 150  AQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYT 209
            + L AL+ G  +++ + K    LD  +  +L+DMY KCGS+  A +VF     + V  + 
Sbjct: 1211 SCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWN 1270

Query: 210  SAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDV 269
            + + GLA +GH  EA  LF  M+S GI PD +++I VLSACSH G   + + YF +MF  
Sbjct: 1271 AMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKT 1330

Query: 270  HGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQR 329
            +GI PE++HY+C+VD LGRAG ++EAEN IASMP K    ++  LLGACR   +AE  +R
Sbjct: 1331 YGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKR 1390

Query: 330  IGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVH 389
            + + L+  D +    Y+LLSNIY  + + ++  + R  M+ + +K+ PG S I++   VH
Sbjct: 1391 VADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVH 1450

Query: 390  EFLAGDRSHEKTQEIYQFWEEIVKKIKNYG-YNVETRSVMFDIEEEEKETVIGYHSEKLA 448
             F+  DRSH +   IY+  E+++K+I+  G Y  +T   + D+EEEEKE  + YHSEKLA
Sbjct: 1451 LFVVDDRSHPQASLIYEKIEDLMKRIREEGSYVPDTDFTLLDVEEEEKERALYYHSEKLA 1510

Query: 449  LAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCL 508
            +AFGLI T P + IR++KN+R+C DCHSA+K +SK+ +R+I +RD   +HHF +G+CSC 
Sbjct: 1511 IAFGLISTPPSATIRVIKNLRVCGDCHSAIKCISKLTQREIVLRDANRFHHFRNGTCSCG 1570

Query: 509  EYW 511
            +YW
Sbjct: 1571 DYW 1573



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 161/365 (44%), Gaps = 48/365 (13%)

Query: 1    MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
            +V+K+SFA  V V NSL+  YS  G V  A   F  S +LD++SWN+MI+ Y +N   +E
Sbjct: 919  LVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEME 978

Query: 61   GLKLFDKM------PQR----------------------NDVSWNSILGGLV-------- 84
             +  F  +      P +                      + V   +I  G++        
Sbjct: 979  AICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTA 1038

Query: 85   ------RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPN 138
                  + G +D+A  + +      L SW  ++ G+ ++ + ++AL  F  M  + +  +
Sbjct: 1039 LIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPID 1098

Query: 139  SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH 198
               L + + A   L  L  G  + +Y  K     D  + + ++DMY KCG +  A+++F 
Sbjct: 1099 EITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFG 1158

Query: 199  SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEK 258
                 D  A+T+ I G   NG    A  ++  M+  G+ PD  ++  ++ A S L  +E+
Sbjct: 1159 EISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQ 1218

Query: 259  GFYYFHSMFDVHGIKPELDHY--ACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLG 316
            G    H+  +V  +   LDH+    +VD+  + G +++A      M ++   V W  +L 
Sbjct: 1219 G-KQIHA--NVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVR-KVVFWNAMLL 1274

Query: 317  ACRVH 321
                H
Sbjct: 1275 GLAQH 1279



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 142/313 (45%), Gaps = 20/313 (6%)

Query: 2    VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
             VK  F  D+FV  +L+  Y   G V  AR +FD+  + D V WN M+  YV N    E 
Sbjct: 743  AVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEA 802

Query: 62   LKLFDKMPQRN---DVS-WNSILGGLVRFGSVDD----------ACRVFNQMPKRSLVSW 107
            L+ F    +     D S  + ++GG+    S +           A ++F      ++ +W
Sbjct: 803  LRFFSAFHRSGFFPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAW 862

Query: 108  VVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK 167
               ++ F   G+   A+  F+ +    +  +S  LV +LSA      LD G  +++ + K
Sbjct: 863  NKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIK 922

Query: 168  KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFEL 227
                    +  +L++MY+K G +  A + F +  + D+ ++ + I   A N   +EA   
Sbjct: 923  SSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICT 982

Query: 228  FENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPEL--DHY--ACMV 283
            F ++   G+ PD  +  +VL ACS     E  ++   S   V+ IK  +  D +    ++
Sbjct: 983  FRDLLRDGLKPDQFTLASVLRACS--TGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALI 1040

Query: 284  DLLGRAGLLEEAE 296
            DL  + G ++EAE
Sbjct: 1041 DLYSKGGKMDEAE 1053



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 80/361 (22%), Positives = 145/361 (40%), Gaps = 72/361 (19%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGE-----ILEGLKL 64
           D ++ N+LI  YS CG +  AR VFD+S D D+V+WNS++  Y +  +     +LEG +L
Sbjct: 645 DRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFRL 704

Query: 65  FDKMPQRN---------------------DVSWNS--------------ILGGLV----R 85
           F  + +                        VS                 + G LV    +
Sbjct: 705 FGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCK 764

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
           +G V  A  +F++MP+R  V W V++  + +N    EAL  F         P+ + L  +
Sbjct: 765 YGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPDFSNLHCV 824

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
           +            N   S  +K+         A  +  Y        AM++F      ++
Sbjct: 825 IGGV---------NSDVSNNRKR--------HAEQVKAY--------AMKMFPFDQGSNI 859

Query: 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHS 265
            A+   +      G  + A + F+ +    I  DS++ + +LSA      ++ G    H+
Sbjct: 860 FAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLG-EQIHA 918

Query: 266 MFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAE 325
           +       P +     ++++  +AG++  AE    + P + D + W T++ +     N E
Sbjct: 919 LVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSP-ELDLISWNTMI-SSYAQNNLE 976

Query: 326 M 326
           M
Sbjct: 977 M 977



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 12/161 (7%)

Query: 2    VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
            VVK  ++ D FV  SL+  Y  CG V+DA  VF + D   VV WN+M+ G  ++G + E 
Sbjct: 1226 VVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEA 1285

Query: 62   LKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLIS 112
            L LF  M     Q + V++  +L      G   +A + F+ M K   ++     +  L+ 
Sbjct: 1286 LNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVD 1345

Query: 113  GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153
               + GR +EA  +   + S+  + ++++  +LL AC   G
Sbjct: 1346 ALGRAGRIQEAENV---IASMPFKASASMYRALLGACRTKG 1383


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 199/543 (36%), Positives = 317/543 (58%), Gaps = 42/543 (7%)

Query: 10   DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
            D FV  +LI  YS  G++ +A ++     D D+ SWN+++ GY+++ +  + L+ F  M 
Sbjct: 1032 DSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMH 1091

Query: 70   Q--------------------------------------RNDVSWNS--ILGGLVRFGSV 89
            +                                       ND+ W S  +L   ++ G +
Sbjct: 1092 EMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDL-WVSSGVLDMYIKCGDM 1150

Query: 90   DDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
             +A  +F ++ +   V+W  +ISG+ +NG    AL+++  M+   ++P+     +L+ A 
Sbjct: 1151 PNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKAS 1210

Query: 150  AQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYT 209
            + L AL+ G  +++ + K    LD  +  +L+DMY KCGS+  A +VF     + V  + 
Sbjct: 1211 SCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWN 1270

Query: 210  SAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDV 269
            + + GLA +GH  EA  LF  M+S GI PD +++I VLSACSH G   + + YF +MF  
Sbjct: 1271 AMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKT 1330

Query: 270  HGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQR 329
            +GI PE++HY+C+VD LGRAG ++EAEN IASMP K    ++  LLGACR   +AE  +R
Sbjct: 1331 YGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKR 1390

Query: 330  IGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVH 389
            + + L+  D +    Y+LLSNIY  + + ++  + R  M+ + +K+ PG S I++   VH
Sbjct: 1391 VADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVH 1450

Query: 390  EFLAGDRSHEKTQEIYQFWEEIVKKIKNYG-YNVETRSVMFDIEEEEKETVIGYHSEKLA 448
             F+  DRSH +   IY+  E+++K+I+  G Y  +T   + D+EEEEKE  + YHSEKLA
Sbjct: 1451 LFVVDDRSHPQASLIYEKIEDLMKRIREEGSYVPDTDFTLLDVEEEEKERALYYHSEKLA 1510

Query: 449  LAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCL 508
            +AFGLI T P + IR++KN+R+C DCHSA+K +SK+ +R+I +RD   +HHF +G+CSC 
Sbjct: 1511 IAFGLISTPPSATIRVIKNLRVCGDCHSAIKCISKLTQREIVLRDANRFHHFRNGTCSCG 1570

Query: 509  EYW 511
            +YW
Sbjct: 1571 DYW 1573



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 161/365 (44%), Gaps = 48/365 (13%)

Query: 1    MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
            +V+K+SFA  V V NSL+  YS  G V  A   F  S +LD++SWN+MI+ Y +N   +E
Sbjct: 919  LVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEME 978

Query: 61   GLKLFDKM------PQR----------------------NDVSWNSILGGLV-------- 84
             +  F  +      P +                      + V   +I  G++        
Sbjct: 979  AICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTA 1038

Query: 85   ------RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPN 138
                  + G +D+A  + +      L SW  ++ G+ ++ + ++AL  F  M  + +  +
Sbjct: 1039 LIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPID 1098

Query: 139  SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH 198
               L + + A   L  L  G  + +Y  K     D  + + ++DMY KCG +  A+++F 
Sbjct: 1099 EITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFG 1158

Query: 199  SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEK 258
                 D  A+T+ I G   NG    A  ++  M+  G+ PD  ++  ++ A S L  +E+
Sbjct: 1159 EISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQ 1218

Query: 259  GFYYFHSMFDVHGIKPELDHY--ACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLG 316
            G    H+  +V  +   LDH+    +VD+  + G +++A      M ++   V W  +L 
Sbjct: 1219 G-KQIHA--NVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVR-KVVFWNAMLL 1274

Query: 317  ACRVH 321
                H
Sbjct: 1275 GLAQH 1279



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 142/313 (45%), Gaps = 20/313 (6%)

Query: 2    VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
             VK  F  D+FV  +L+  Y   G V  AR +FD+  + D V WN M+  YV N    E 
Sbjct: 743  AVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEA 802

Query: 62   LKLFDKMPQRN---DVS-WNSILGGLVRFGSVDD----------ACRVFNQMPKRSLVSW 107
            L+ F    +     D S  + ++GG+    S +           A ++F      ++ +W
Sbjct: 803  LRFFSAFHRSGFXPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAW 862

Query: 108  VVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK 167
               ++ F   G+   A+  F+ +    +  +S  LV +LSA      LD G  +++ + K
Sbjct: 863  NKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIK 922

Query: 168  KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFEL 227
                    +  +L++MY+K G +  A + F +  + D+ ++ + I   A N   +EA   
Sbjct: 923  SSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICT 982

Query: 228  FENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPEL--DHY--ACMV 283
            F ++   G+ PD  +  +VL ACS     E  ++   S   V+ IK  +  D +    ++
Sbjct: 983  FRDLLRDGLKPDQFTLASVLRACS--TGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALI 1040

Query: 284  DLLGRAGLLEEAE 296
            DL  + G ++EAE
Sbjct: 1041 DLYSKGGKMDEAE 1053



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 80/361 (22%), Positives = 145/361 (40%), Gaps = 72/361 (19%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGE-----ILEGLKL 64
           D ++ N+LI  YS CG +  AR VFD+S D D+V+WNS++  Y +  +     +LEG +L
Sbjct: 645 DRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFRL 704

Query: 65  FDKMPQRN---------------------DVSWNS--------------ILGGLV----R 85
           F  + +                        VS                 + G LV    +
Sbjct: 705 FGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCK 764

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
           +G V  A  +F++MP+R  V W V++  + +N    EAL  F         P+ + L  +
Sbjct: 765 YGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPDFSNLHCV 824

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
           +            N   S  +K+         A  +  Y        AM++F      ++
Sbjct: 825 IGGV---------NSDVSNNRKR--------HAEQVKAY--------AMKMFPFDQGSNI 859

Query: 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHS 265
            A+   +      G  + A + F+ +    I  DS++ + +LSA      ++ G    H+
Sbjct: 860 FAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLG-EQIHA 918

Query: 266 MFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAE 325
           +       P +     ++++  +AG++  AE    + P + D + W T++ +     N E
Sbjct: 919 LVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSP-ELDLISWNTMI-SSYAQNNLE 976

Query: 326 M 326
           M
Sbjct: 977 M 977



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 12/161 (7%)

Query: 2    VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
            VVK  ++ D FV  SL+  Y  CG V+DA  VF + D   VV WN+M+ G  ++G + E 
Sbjct: 1226 VVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEA 1285

Query: 62   LKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLIS 112
            L LF  M     Q + V++  +L      G   +A + F+ M K   ++     +  L+ 
Sbjct: 1286 LNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVD 1345

Query: 113  GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153
               + GR +EA  +   + S+  + ++++  +LL AC   G
Sbjct: 1346 ALGRAGRIQEAENV---IASMPFKASASMYRALLGACRTKG 1383


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/549 (37%), Positives = 316/549 (57%), Gaps = 40/549 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++++ F +D+ + N+L+  Y+ CG + +AR VF++    D V+W ++I+GY ++    + 
Sbjct: 86  ILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDA 145

Query: 62  LKLFDKMPQ----RNDVSWNSILGG----------------------------------- 82
           L  F++M +     N+ + +S++                                     
Sbjct: 146 LLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDL 205

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             R+G +DDA  VF+ +  R+ VSW  LI+G A+    ++AL LF+ M      P+    
Sbjct: 206 YTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSY 265

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            SL  AC+  G L+ G WV++Y+ K   KL +     L+DMYAK GSI  A ++F     
Sbjct: 266 ASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAK 325

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           +DV ++ S +   A +G   EA   FE M+  GI P+ IS+++VL+ACSH G +++G++Y
Sbjct: 326 RDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHY 385

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           +  M    GI PE  HY  +VDLLGRAG L  A  FI  MP++P   IW  LL ACR+H+
Sbjct: 386 YELM-KKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHK 444

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           N E+G      + E D +  G +++L NIY    +  +A  VRK M++  +K+ P CS +
Sbjct: 445 NTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWV 504

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E++  +H F+A D  H + +EI + WEE++ KIK  GY  +T  V+  ++++E+E  + Y
Sbjct: 505 EIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQY 564

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSEK+ALAF L+ T PGS I I KNIR+C DCH+A+KL SKV  R+I +RD   +HHF+D
Sbjct: 565 HSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKD 624

Query: 503 GSCSCLEYW 511
           G+CSC +YW
Sbjct: 625 GNCSCKDYW 633



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 136/274 (49%), Gaps = 8/274 (2%)

Query: 48  MINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSW 107
           +I G + +  IL+ +   D       V  N++L    + GS+++A +VF +MP+R  V+W
Sbjct: 76  LIQGRIVHAHILQSIFRHDI------VMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTW 129

Query: 108 VVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK 167
             LISG++Q+ RP +AL  F +M      PN   L S++ A A       G+ ++ +  K
Sbjct: 130 TTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVK 189

Query: 168 KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFEL 227
                +  + +AL+D+Y + G +D A  VF +   ++  ++ + I G A    + +A EL
Sbjct: 190 CGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALEL 249

Query: 228 FENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLG 287
           F+ M   G  P   SY ++  ACS  G++E+G  + H+     G K        ++D+  
Sbjct: 250 FQGMLRDGFRPSHFSYASLFGACSSTGFLEQG-KWVHAYMIKSGEKLVAFAGNTLLDMYA 308

Query: 288 RAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           ++G + +A      +  K D V W +LL A   H
Sbjct: 309 KSGSIHDARKIFDRL-AKRDVVSWNSLLTAYAQH 341



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 80/182 (43%), Gaps = 18/182 (9%)

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           +LL  C     L  G  V+++I +   + D ++   L++MYAKCGS++ A +VF     +
Sbjct: 65  TLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQR 124

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA--------CSHLGW 255
           D   +T+ I G + +    +A   F  M   G SP+  +  +V+ A        C H   
Sbjct: 125 DFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGH--- 181

Query: 256 VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
                   H      G    +   + ++DL  R GL+++A+    ++  + D V W  L+
Sbjct: 182 ------QLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRND-VSWNALI 234

Query: 316 GA 317
             
Sbjct: 235 AG 236


>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 190/424 (44%), Positives = 275/424 (64%)

Query: 88  SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLS 147
           SV DA +VF+++P R++VSW  LI+G+  N   ++ + +FREMQ    +P    +V +L 
Sbjct: 192 SVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVIDVFREMQIAGAKPVEVTMVGVLL 251

Query: 148 ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSA 207
           ACA LGAL+ G W+  YI    ++L+  +  ALIDMYAKCG +D A ++F +   K+V  
Sbjct: 252 ACAHLGALNQGRWIDDYIDHNRLRLNVFVGTALIDMYAKCGVVDEAEKIFKAMRVKNVYT 311

Query: 208 YTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMF 267
           +   I G AMNG    A + F  M  +   PD ++++ VL AC H G V +G  YF SM 
Sbjct: 312 WNVLISGYAMNGRGESALQAFSRMIMEKFKPDEVTFLGVLCACCHQGLVNEGRTYFTSMK 371

Query: 268 DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMG 327
           +  G++P ++HY CMVDLLGRAG L+EA+  I +M M+PD +IW  LLGACR+H N ++G
Sbjct: 372 EEFGLRPRIEHYGCMVDLLGRAGFLDEAQQLIQAMSMQPDPIIWRELLGACRIHGNIQLG 431

Query: 328 QRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGV 387
           +     L+E + N+   Y+LL+N+Y    + +   EVR+ M  R++++ PGCS IE+D V
Sbjct: 432 EFAIKKLLELEPNNGENYVLLANLYARDQRWDKVGEVREMMDCRRVRKVPGCSSIEIDNV 491

Query: 388 VHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKL 447
           V+EF+  +      +E+Y+   ++ KK+K  GY  +T    +DIEEEEKE  + YHSEKL
Sbjct: 492 VYEFVVSNYIKPGFEEVYKLLADMNKKLKLAGYVADTGMASYDIEEEEKEHSLMYHSEKL 551

Query: 448 ALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSC 507
           ALAFGL+ +  G  +RIVKN+RIC DCH   K+VSKV++R IS+RDR  +HHF  G+CSC
Sbjct: 552 ALAFGLLKSPSGLTLRIVKNLRICQDCHGFFKIVSKVYRRDISVRDRNRFHHFVGGACSC 611

Query: 508 LEYW 511
            +YW
Sbjct: 612 KDYW 615



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 110/240 (45%), Gaps = 44/240 (18%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++  F  +V+V  +L+  Y  C  V DAR VFDE  D ++VSWN++I GY  N    + 
Sbjct: 168 IIQMGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKV 227

Query: 62  LKLFDKMP----------------------------------QRNDVSWNSILGGLV--- 84
           + +F +M                                     N +  N  +G  +   
Sbjct: 228 IDVFREMQIAGAKPVEVTMVGVLLACAHLGALNQGRWIDDYIDHNRLRLNVFVGTALIDM 287

Query: 85  --RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G VD+A ++F  M  +++ +W VLISG+A NGR + AL  F  M     +P+    
Sbjct: 288 YAKCGVVDEAEKIFKAMRVKNVYTWNVLISGYAMNGRGESALQAFSRMIMEKFKPDEVTF 347

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKC---IKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
           + +L AC   G ++ G   ++ ++++     +++   C  ++D+  + G +D A Q+  +
Sbjct: 348 LGVLCACCHQGLVNEGRTYFTSMKEEFGLRPRIEHYGC--MVDLLGRAGFLDEAQQLIQA 405



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/228 (21%), Positives = 111/228 (48%), Gaps = 3/228 (1%)

Query: 110 LISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC 169
           +I  +  + +   ++ ++ +M    + P+S+   ++L + AQL   + G  ++  I +  
Sbjct: 113 MIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQMG 172

Query: 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFE 229
            + +  +  AL++MY  C S+  A QVF    D+++ ++ + I G   N    +  ++F 
Sbjct: 173 FESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVIDVFR 232

Query: 230 NMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRA 289
            M+  G  P  ++ + VL AC+HLG + +G  +     D + ++  +     ++D+  + 
Sbjct: 233 EMQIAGAKPVEVTMVGVLLACAHLGALNQG-RWIDDYIDHNRLRLNVFVGTALIDMYAKC 291

Query: 290 GLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMG-QRIGNMLIE 336
           G+++EAE    +M +K +   W  L+    ++   E   Q    M++E
Sbjct: 292 GVVDEAEKIFKAMRVK-NVYTWNVLISGYAMNGRGESALQAFSRMIME 338


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/554 (37%), Positives = 332/554 (59%), Gaps = 49/554 (8%)

Query: 7   FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK--- 63
           F  D+FV ++LI  YS CG++ +AR +FDE    ++V+W S+I GYV+N +  E L    
Sbjct: 113 FESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQNDDAHEALMVFK 172

Query: 64  --LFDKMPQRND-------------------------VSW------------------NS 78
             LF+K     +                         VS                   N+
Sbjct: 173 EFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHGVAIKVGLDKVMGVENT 232

Query: 79  ILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM-QSLDLEP 137
           +L    + G V  + +VF+ M ++ +VSW  +I+ +AQNG   +A  +F  M ++   + 
Sbjct: 233 LLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKY 292

Query: 138 NSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVF 197
           N   L +LL ACA  GAL  G  ++  + K     + I+  ++IDMY KCG  ++A   F
Sbjct: 293 NEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAF 352

Query: 198 HSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVE 257
               +K+V ++T+ I G  M+G + EA ++F  M   G+ P+ I++I+VL+ACSH G++E
Sbjct: 353 DGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPNYITFISVLAACSHAGFLE 412

Query: 258 KGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
           +G+ +F++M   + ++P ++HY CMVDLLGRAG ++EA N I SM ++ D V+WG+LL A
Sbjct: 413 EGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLLAA 472

Query: 318 CRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAP 377
           CR+H++ E+ +     L + D ++ G Y+LL+NIY +  + ++ E +R  ++ R + + P
Sbjct: 473 CRIHKDVELAEISARELFKLDPSNCGYYVLLANIYADAGRWKDVERMRILVKDRGLVKPP 532

Query: 378 GCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKE 437
           G SL+EL G VH FL GD+ H + ++IY++ EE+  K++  GY     SV+ D++EEEKE
Sbjct: 533 GYSLVELKGRVHVFLVGDKEHPQHEKIYKYLEELSVKLQEAGYVPNMASVLHDVDEEEKE 592

Query: 438 TVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHY 497
            ++  HSEKLA+AFG++ + PGS I ++KN+R+C DCH+ +KL+SK+  R+I +RD K +
Sbjct: 593 MIVRVHSEKLAVAFGVMNSIPGSTIHVIKNLRVCGDCHTVIKLISKIVSREIIVRDAKRF 652

Query: 498 HHFEDGSCSCLEYW 511
           HHF+DG CSC +YW
Sbjct: 653 HHFKDGLCSCGDYW 666



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 10/169 (5%)

Query: 95  VFNQMPKRSLV-SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153
           +FN+   R+ V SW  LI+  A+ G   E+L  F  M+ LD++PN +     + +C+ L 
Sbjct: 37  LFNKYFDRTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALF 96

Query: 154 ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIF 213
            L+ G   +        + D  + +ALIDMY+KCG +  A  +F     +++  +TS I 
Sbjct: 97  DLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLIT 156

Query: 214 GLAMNGHSIEAFELFE---------NMKSKGISPDSISYIAVLSACSHL 253
           G   N  + EA  +F+         N +  G S DS++ I+VLSACS +
Sbjct: 157 GYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRV 205



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 12/157 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K  +  +V +  S+I  Y  CG+   AR  FD   + +V SW +MI GY  +G   E 
Sbjct: 320 VIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREA 379

Query: 62  LKLFDKM----PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLIS 112
           L +F +M     + N +++ S+L      G +++  R FN M     V      +  ++ 
Sbjct: 380 LDVFYQMIWAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVD 439

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
              + G  KEA  L + M+   +  +  +  SLL+AC
Sbjct: 440 LLGRAGYIKEAYNLIKSMK---VRRDFVLWGSLLAAC 473


>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
 gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 603

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/526 (38%), Positives = 313/526 (59%), Gaps = 48/526 (9%)

Query: 30  ARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSV 89
           AR +F+   + D+V +NSM  GY R    LE   LF ++ +   +  N     L++  +V
Sbjct: 82  ARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAV 141

Query: 90  ---------------------------------------DDACRVFNQMPKRSLVSWVVL 110
                                                  D A  VF+++ +  +V +  +
Sbjct: 142 AKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAM 201

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK--- 167
           I+G+A+  RP EAL+LFREMQ   L+PN   L+S+LS+CA LG+LD G W++ Y +K   
Sbjct: 202 ITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSF 261

Query: 168 -KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFE 226
            K +K+++    ALIDM+AKCGS+D A+ +F     KD  A+++ I   A +G + ++  
Sbjct: 262 CKYVKVNT----ALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSML 317

Query: 227 LFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLL 286
           +FE M+S+ + PD I+++ +L+ACSH G VE+G  YF  M    GI P + HY  MVDLL
Sbjct: 318 MFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLL 377

Query: 287 GRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYI 346
            RAG LE+A  FI  +P+ P  ++W  LL AC  H N ++ +++   + E D +H G Y+
Sbjct: 378 SRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYV 437

Query: 347 LLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQ 406
           +LSN+Y    K E  + +RK M+ RK  + PGCS IE++ VVHEF +GD     T ++++
Sbjct: 438 ILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHR 497

Query: 407 FWEEIVKKIKNYGYNVETRSVMF-DIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIV 465
             +E+VK++K  GY  +T  V+  ++ ++EKE  + YHSEKLA+ FGL+ T PG+ IR+V
Sbjct: 498 ALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVV 557

Query: 466 KNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           KN+R+C DCH+A KL+S +F RK+ +RD + +HHFEDG CSC ++W
Sbjct: 558 KNLRVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 121/257 (47%), Gaps = 6/257 (2%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
            S+  A  +F  M +  +V +  +  G+++   P E  +LF E+    + P++    SLL
Sbjct: 77  SSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLL 136

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
            ACA   AL+ G  ++    K  +  +  +C  LI+MY +C  +D A  VF    +  V 
Sbjct: 137 KACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVV 196

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
            Y + I G A      EA  LF  M+ K + P+ I+ ++VLS+C+ LG ++ G  + H  
Sbjct: 197 CYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLG-KWIHKY 255

Query: 267 FDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAE- 325
              H     +     ++D+  + G L++A +    M  K D   W  ++ A   H  AE 
Sbjct: 256 AKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYK-DTQAWSAMIVAYANHGKAEK 314

Query: 326 ---MGQRIGNMLIESDQ 339
              M +R+ +  ++ D+
Sbjct: 315 SMLMFERMRSENVQPDE 331



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 107/226 (47%), Gaps = 40/226 (17%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           +V+V  +LI  Y+ C  V  AR VFD   +  VV +N+MI GY R     E L LF +M 
Sbjct: 163 NVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQ 222

Query: 70  QR----NDVSWNSILGG-----------------------------------LVRFGSVD 90
            +    N+++  S+L                                       + GS+D
Sbjct: 223 GKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLD 282

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           DA  +F +M  +   +W  +I  +A +G+ ++++ +F  M+S +++P+    + LL+AC+
Sbjct: 283 DAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACS 342

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSIL-CAALIDMYAKCGSIDLAMQ 195
             G ++ G   +S +  K   + SI    +++D+ ++ G+++ A +
Sbjct: 343 HTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYE 388



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 83/171 (48%), Gaps = 12/171 (7%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           K+SF   V V  +LI  ++ CG + DA  +F++    D  +W++MI  Y  +G+  + + 
Sbjct: 258 KHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSML 317

Query: 64  LFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLISGF 114
           +F++M     Q +++++  +L      G V++  + F+QM  +     S+  +  ++   
Sbjct: 318 MFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLL 377

Query: 115 AQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           ++ G  ++A   +  +  L + P   +   LL+AC+    LD    V   I
Sbjct: 378 SRAGNLEDA---YEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERI 425


>gi|115446651|ref|NP_001047105.1| Os02g0552100 [Oryza sativa Japonica Group]
 gi|46389885|dbj|BAD15486.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536636|dbj|BAF09019.1| Os02g0552100 [Oryza sativa Japonica Group]
 gi|125582482|gb|EAZ23413.1| hypothetical protein OsJ_07107 [Oryza sativa Japonica Group]
 gi|215712305|dbj|BAG94432.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 586

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 210/512 (41%), Positives = 310/512 (60%), Gaps = 38/512 (7%)

Query: 5   NSFAYDVFVKNSLIQFYSVCGRVRDARWV-FDESDDLDVVSWNSMINGYVRNGEILEGLK 63
            + A+ V V NSL++ Y   G +  AR V +     LDVVSWN+M++GY + G++    +
Sbjct: 108 GALAHPV-VTNSLLKLYCSLGLLDRARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAARE 166

Query: 64  LFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEA 123
           +F +MP+RN VSW++++   VR G   +A  VF++M                        
Sbjct: 167 VFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRM------------------------ 202

Query: 124 LALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCI---KLDSILCAAL 180
               RE    +  P+  +LVS+L ACA LGA++ G WV+ Y++       + + +L  AL
Sbjct: 203 ---MRE----EFRPDVVVLVSVLKACAHLGAVERGRWVHRYLETGSFGGRRGNLMLETAL 255

Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           +DMY KCG ++ A QVF     +DV  + + I GLAMNG+   A ELF  M  KG  P+ 
Sbjct: 256 VDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMIGGLAMNGYGERALELFRRMLQKGFMPNE 315

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
            ++IAVL AC+H G V++G   F SM D +GIKP+ +HY C+ DLLGRAG +EEAE  + 
Sbjct: 316 STFIAVLCACTHTGRVDEGKRVFKSMQD-YGIKPQREHYGCLADLLGRAGNVEEAEALLL 374

Query: 301 SMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGEN 360
            MPM+P    WG L+ +C++H +  +G+R+G  LIE +    GRY++L N+Y    + E 
Sbjct: 375 DMPMEPHASQWGALMSSCQMHNDINVGERVGKRLIELEPYDGGRYVVLFNLYAVNGRWEE 434

Query: 361 AEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGY 420
           A  +R+ M  R  K+  G S IEL+G+VHEF++GD  H  T++IY   E+I ++++  GY
Sbjct: 435 ARTIRQMMEDRGAKKETGLSFIELNGLVHEFISGDTRHPLTRKIYALLEDIERRLQLIGY 494

Query: 421 NVETRSVMFDI-EEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMK 479
             +T  V+ D+ +EE+K   + YHSE+LALAFG++    G  IRIVKN+R+C DCH   K
Sbjct: 495 VKDTSQVIMDMDDEEDKGIALSYHSERLALAFGILNIPQGVPIRIVKNLRVCRDCHVHSK 554

Query: 480 LVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           LVSK+++R+I +RDR  +H F DG CSC +YW
Sbjct: 555 LVSKLYEREIIVRDRHRFHVFRDGVCSCNDYW 586


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 201/524 (38%), Positives = 312/524 (59%), Gaps = 39/524 (7%)

Query: 27  VRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRN-------------- 72
           V   R +F+   + D+VSWN++I G  RNG   E L +  +M   N              
Sbjct: 250 VDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPL 309

Query: 73  -----DVS-WNSILGGLVRFG-------------------SVDDACRVFNQMPKRSLVSW 107
                D+S    I G  +R G                    V D+ RVF  + +R  +SW
Sbjct: 310 IAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISW 369

Query: 108 VVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK 167
             +I+G  QNG   E L  FR+M    ++P S    S++ ACA L  L  G  ++ YI +
Sbjct: 370 NSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITR 429

Query: 168 KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFEL 227
                +  + ++L+DMYAKCG+I  A Q+F     +D+ ++T+ I G A++GH+++A EL
Sbjct: 430 NGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIEL 489

Query: 228 FENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLG 287
           FE MK++GI P+ ++++AVL+ACSH G V++ + YF+SM    GI P ++HYA + DLLG
Sbjct: 490 FEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLG 549

Query: 288 RAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYIL 347
           RAG LEEA +FI  MP+ P   +W TLL ACRVH+N +M +++ N ++E D  + G YIL
Sbjct: 550 RAGRLEEAYDFICGMPIGPTGSVWATLLSACRVHKNVDMAEKVANRILEVDPKNTGAYIL 609

Query: 348 LSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQF 407
           L+NIY    + + A + R ++R+  I++ P CS IE+   V+ F+AGD SH   ++I + 
Sbjct: 610 LANIYSAARRWKEAAKWRASLRRTGIRKTPACSWIEVRNKVYAFMAGDESHPCYEKIREA 669

Query: 408 WEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKN 467
            E +++ ++  GY  +T  V  D+EEE+K+ ++  HSE+LA+ FG+I T  G+ IR+ KN
Sbjct: 670 MEVLMELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTPAGTTIRVTKN 729

Query: 468 IRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           +R+C+DCH+A K +SK+  R+I +RD   +HHF++G+CSC +YW
Sbjct: 730 LRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 773



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 119/237 (50%), Gaps = 2/237 (0%)

Query: 88  SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLS 147
           SVD   ++F  MP++ LVSW  +I+G A+NG   E L + REM   +L+P+S  L S+L 
Sbjct: 249 SVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLP 308

Query: 148 ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSA 207
             A+   +  G  ++    ++ +  +  + ++LIDMYAKC  +  + +VF    ++D  +
Sbjct: 309 LIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGIS 368

Query: 208 YTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMF 267
           + S I G   NG   E  + F  M    I P S S+ +++ AC+HL  +  G    H   
Sbjct: 369 WNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLG-KQLHGYI 427

Query: 268 DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
             +G    +   + +VD+  + G +  A      M ++ D V W  ++  C +H +A
Sbjct: 428 TRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLR-DMVSWTAMIMGCALHGHA 483



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 96/199 (48%), Gaps = 40/199 (20%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           ++     +V+V +SLI  Y+ C RV D+  VF    + D +SWNS+I G V+NG   EGL
Sbjct: 327 IRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAGCVQNGLFDEGL 386

Query: 63  KLFDKM------PQ----------------------------RNDVSWN-----SILGGL 83
           K F +M      P+                            RN    N     S++   
Sbjct: 387 KFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMY 446

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
            + G++  A ++F++M  R +VSW  +I G A +G   +A+ LF +M++  +EPN    +
Sbjct: 447 AKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQMKTEGIEPNYVAFM 506

Query: 144 SLLSACAQLGALDYGNWVY 162
           ++L+AC+  G +D   W Y
Sbjct: 507 AVLTACSHAGLVDEA-WKY 524



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 82/157 (52%), Gaps = 12/157 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           + +N F  ++F+ +SL+  Y+ CG +R AR +FD     D+VSW +MI G   +G  L+ 
Sbjct: 427 ITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDA 486

Query: 62  LKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMP-----KRSLVSWVVLIS 112
           ++LF++M     + N V++ ++L      G VD+A + FN M         +  +  +  
Sbjct: 487 IELFEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSD 546

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
              + GR +EA   +  +  + + P  ++  +LLSAC
Sbjct: 547 LLGRAGRLEEA---YDFICGMPIGPTGSVWATLLSAC 580



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 8/145 (5%)

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           D+ R+FN +     ++W  +I  +  +G P ++L  F  M +  L P+  +  S+L ACA
Sbjct: 60  DSLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACA 119

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYA------KCGSIDL-AMQVFHSYGDK 203
            L  L+ G  ++ YI +  +  D     AL++MY+      K G   L A QV     ++
Sbjct: 120 MLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMTER 179

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELF 228
             S  T+++  +   G  +   E F
Sbjct: 180 TRSVRTASVL-VGNQGRKVSDIEAF 203


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 197/548 (35%), Positives = 319/548 (58%), Gaps = 40/548 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +++ F   V +  +L+  Y+ CG +  AR +FD   + +VVSWNSMI+ YV+N    E +
Sbjct: 263 MRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAM 322

Query: 63  KLFDKM------PQ---------------------------------RNDVSWNSILGGL 83
            +F KM      P                                  RN    NS++   
Sbjct: 323 LIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMY 382

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
            +   VD A  +F ++  R+LVSW  +I GFAQNGRP +AL  F +M+S  ++P++   V
Sbjct: 383 CKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYV 442

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           S+++A A+L    +  W++  + + C+  +  +  AL+DMYAKCG+I +A  +F    ++
Sbjct: 443 SVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSER 502

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
            V+ + + I G   +G    A ELFE M+   I P+ +++++V+SACSH G VE G   F
Sbjct: 503 HVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCF 562

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
           + M + + I+  +DHY  MVDLLGRAG L EA +FI  MP+KP   ++G +LGAC++H+N
Sbjct: 563 YMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKN 622

Query: 324 AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE 383
               ++    L E + +  G ++LL+NIY      E   +VR +M ++ +++ PGCS++E
Sbjct: 623 VNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVE 682

Query: 384 LDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYH 443
           +   VH F +G  +H  +++IY F E+++  IK  GY  +T  V+  +E + KE ++  H
Sbjct: 683 IKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL-GVENDVKEQLLSTH 741

Query: 444 SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
           SEKLA++FGL+ T  G+ I + KN+R+C+DCH+A K +S V  R+I +RD + +HHF++G
Sbjct: 742 SEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNG 801

Query: 504 SCSCLEYW 511
           +CSC +YW
Sbjct: 802 ACSCGDYW 809



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 99/409 (24%), Positives = 186/409 (45%), Gaps = 72/409 (17%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++VK+ F+ D+F    L   Y+ C +V +AR VFD   + D+VSWN+++ GY +NG    
Sbjct: 160 LLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARM 219

Query: 61  GLKLFDKMPQRN-DVSWNSILGGL------------------------------------ 83
            L++   M + N   S+ +I+  L                                    
Sbjct: 220 ALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVD 279

Query: 84  --VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + GS++ A ++F+ M +R++VSW  +I  + QN  PKEA+ +F++M    ++P    
Sbjct: 280 MYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVS 339

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           ++  L ACA LG L+ G +++    +  +  +  +  +LI MY KC  +D A  +F    
Sbjct: 340 VMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQ 399

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS------HLGW 255
            + + ++ + I G A NG  I+A   F  M+S+ + PD+ +Y++V++A +      H  W
Sbjct: 400 SRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKW 459

Query: 256 V---------EKGFYYFHSMFDVHG---------------IKPELDHYACMVDLLGRAGL 291
           +         +K  +   ++ D++                 +  +  +  M+D  G  G 
Sbjct: 460 IHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGF 519

Query: 292 LEEAENFIASM---PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIES 337
            + A      M    +KP+ V + +++ AC      E G +   M+ E+
Sbjct: 520 GKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKEN 568



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 148/300 (49%), Gaps = 39/300 (13%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V KN    + F +  L+  +   G V +A  VF+  D    V +++M+ G+ +  ++ +
Sbjct: 59  LVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDK 118

Query: 61  GLKLFDKM------PQRNDVSW--------------NSILGGLVRFG------------- 87
            L+ F +M      P   + ++                I G LV+ G             
Sbjct: 119 ALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLEN 178

Query: 88  ------SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
                  V++A +VF++MP+R LVSW  +++G++QNG  + AL + + M   +L+P+   
Sbjct: 179 MYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFIT 238

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           +VS+L A + L  +  G  ++ Y  +        +  AL+DMYAKCGS++ A Q+F    
Sbjct: 239 IVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGML 298

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
           +++V ++ S I     N +  EA  +F+ M  +G+ P  +S +  L AC+ LG +E+G +
Sbjct: 299 ERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRF 358



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 111/233 (47%), Gaps = 2/233 (0%)

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
           R+GSVD+A RVF  +  +  V +  ++ GFA+     +AL  F  M+  D+EP       
Sbjct: 81  RYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTY 140

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           LL  C     L  G  ++  + K    LD      L +MYAKC  ++ A +VF    ++D
Sbjct: 141 LLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERD 200

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           + ++ + + G + NG +  A E+ ++M  + + P  I+ ++VL A S L  +  G    H
Sbjct: 201 LVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVG-KEIH 259

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
                 G    ++    +VD+  + G LE A      M ++ + V W +++ A
Sbjct: 260 GYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGM-LERNVVSWNSMIDA 311



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 78/158 (49%), Gaps = 12/158 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V+++    +VFV  +L+  Y+ CG +  AR +FD   +  V +WN+MI+GY  +G    
Sbjct: 463 VVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKA 522

Query: 61  GLKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLI 111
            L+LF++M     + N V++ S++      G V+   + F  M +      S+  +  ++
Sbjct: 523 ALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMV 582

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
               + GR  EA     +M    ++P   +  ++L AC
Sbjct: 583 DLLGRAGRLNEAWDFIMQMP---VKPAVNVYGAMLGAC 617


>gi|449513257|ref|XP_004164277.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 558

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 188/426 (44%), Positives = 284/426 (66%), Gaps = 1/426 (0%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD-LEPNSAILVSL 145
           GS++ A +VF++M +R  VSW  +I+ F  NG   EAL LF +MQ  D + P+   ++S+
Sbjct: 133 GSLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASEALDLFEKMQLEDKVVPDEVTMLSV 192

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
           +SA + LG L+ G WV ++I +    +   L  ALIDM+++CGSID ++ VF     ++V
Sbjct: 193 ISAISHLGDLELGRWVRAFIGRLGFGVSVALGTALIDMFSRCGSIDESIVVFEKMAVRNV 252

Query: 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHS 265
             +T+ I GL ++G S+EA  +F +M+  G+ PD +++  VL ACSH G V++G+  F S
Sbjct: 253 LTWTALINGLGIHGRSMEALAMFHSMRKSGVQPDYVTFSGVLVACSHGGLVKEGWDIFES 312

Query: 266 MFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAE 325
           +  V+G+ P LDHY CMVD+LGRAGLL EA +F+  MPMKP+++IW TLLGAC  H N  
Sbjct: 313 IRKVYGMDPLLDHYGCMVDILGRAGLLNEAYDFVERMPMKPNSIIWRTLLGACVNHNNLG 372

Query: 326 MGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELD 385
           + +++   + +   + +G  +LLSN+Y    +      +R  MR+++I + PGCS I +D
Sbjct: 373 LAEKVKAKISKISSSQNGDLVLLSNVYGAAGRWVEKASIRSKMREKRIGKEPGCSSINVD 432

Query: 386 GVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSE 445
             +HEF++GD SH ++++I +F   I+  ++N GY ++T++V+ DIEEEE+E  + YHSE
Sbjct: 433 QTIHEFVSGDNSHPQSEDITKFLSSIIGDLRNRGYMMQTKNVLHDIEEEEREHSLSYHSE 492

Query: 446 KLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSC 505
           KLA+AF ++  K    IRI+KN+RIC DCHS MK +S  F+RKI IRDR  +HHFE G C
Sbjct: 493 KLAVAFAILSMKDKRTIRIMKNLRICYDCHSFMKHISVRFERKIIIRDRNRFHHFEKGLC 552

Query: 506 SCLEYW 511
           SC +YW
Sbjct: 553 SCHDYW 558



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 132/303 (43%), Gaps = 80/303 (26%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++VK     D+FV+N+LI  Y  CG +  A  VFDE  + D VSW+++I  ++ NG   E
Sbjct: 109 LIVKYGLGSDIFVQNALICVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASE 168

Query: 61  GLKLFDKMPQRNDVSWNSI-----------LGGL-------------------------- 83
            L LF+KM   + V  + +           LG L                          
Sbjct: 169 ALDLFEKMQLEDKVVPDEVTMLSVISAISHLGDLELGRWVRAFIGRLGFGVSVALGTALI 228

Query: 84  ---VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
               R GS+D++  VF +M  R++++W  LI+G   +GR  EALA+F  M+   ++P+  
Sbjct: 229 DMFSRCGSIDESIVVFEKMAVRNVLTWTALINGLGIHGRSMEALAMFHSMRKSGVQPDYV 288

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSIL--CAALIDMYAKCGSIDLAMQVFH 198
               +L AC+  G +  G  ++  I +K   +D +L     ++D+  + G ++       
Sbjct: 289 TFSGVLVACSHGGLVKEGWDIFESI-RKVYGMDPLLDHYGCMVDILGRAGLLN------- 340

Query: 199 SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC---SHLGW 255
                                   EA++  E M  K   P+SI +  +L AC   ++LG 
Sbjct: 341 ------------------------EAYDFVERMPMK---PNSIIWRTLLGACVNHNNLGL 373

Query: 256 VEK 258
            EK
Sbjct: 374 AEK 376



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 120/235 (51%), Gaps = 7/235 (2%)

Query: 88  SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLS 147
           S+  A  VF+++P    +++  +I   ++   P  +L+ F  M+S  +  ++     +L 
Sbjct: 37  SLSYARYVFSRIPSPDTIAYNTIIRSHSR-FFPSHSLSYFFSMRSNGIPLDNFTFPFVLK 95

Query: 148 ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSA 207
           AC++L        ++S I K  +  D  +  ALI +Y  CGS+++A++VF    ++D  +
Sbjct: 96  ACSRL---QINLHLHSLIVKYGLGSDIFVQNALICVYGYCGSLEMAVKVFDEMSERDSVS 152

Query: 208 YTSAIFGLAMNGHSIEAFELFENMK-SKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
           +++ I     NG++ EA +LFE M+    + PD ++ ++V+SA SHLG +E G  +  + 
Sbjct: 153 WSTVIASFLNNGYASEALDLFEKMQLEDKVVPDEVTMLSVISAISHLGDLELG-RWVRAF 211

Query: 267 FDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
               G    +     ++D+  R G ++E+      M ++ + + W  L+    +H
Sbjct: 212 IGRLGFGVSVALGTALIDMFSRCGSIDESIVVFEKMAVR-NVLTWTALINGLGIH 265


>gi|242061934|ref|XP_002452256.1| hypothetical protein SORBIDRAFT_04g022510 [Sorghum bicolor]
 gi|241932087|gb|EES05232.1| hypothetical protein SORBIDRAFT_04g022510 [Sorghum bicolor]
          Length = 590

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 210/513 (40%), Positives = 306/513 (59%), Gaps = 39/513 (7%)

Query: 5   NSFAYDVFVKNSLIQFYSVCGRVRDARWVFDES--DDLDVVSWNSMINGYVRNGEILEGL 62
            + A+ V V N L++ Y   G + DAR VFD S    LDVVSWN+M++GY + G++    
Sbjct: 111 GALAHPV-VTNCLLKLYCALGMLPDARRVFDTSGATALDVVSWNTMVSGYGKCGDLEAAR 169

Query: 63  KLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKE 122
           ++F +MP+R  VSW++++   VR G   +A RVF+QM                 NG    
Sbjct: 170 EVFVRMPERGLVSWSAMIDACVRTGEFSEALRVFDQM---------------TGNG---- 210

Query: 123 ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCI---KLDSILCAA 179
                        +P++ +LVS+L  CA LGAL+ G WV+ +++ + +     + +L  A
Sbjct: 211 ------------FKPDAVVLVSVLKTCAHLGALERGRWVHRFLKAERLGGRPGNVMLETA 258

Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
           L+DMY KCG ++ A  VF      DV  + + I GLAMNGH   A ELF  M  KG  P+
Sbjct: 259 LVDMYCKCGCMNEAWWVFDGVQSHDVVLWNAMIGGLAMNGHGKRALELFRRMLDKGFVPN 318

Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI 299
             +++  L AC H G V++G   F SM D HGI+P  +HY C+ DLLGRAGLLEEAE  +
Sbjct: 319 ESTFVVALCACIHTGRVDEGEDVFRSMRD-HGIEPRREHYGCLADLLGRAGLLEEAEGVL 377

Query: 300 ASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGE 359
             MPM+P    WG L+ +C +H N  +G+R+G  LIE + +  GRY+ L N+Y      E
Sbjct: 378 LDMPMEPHASQWGALMSSCLMHNNVGVGERVGKKLIELEPDDGGRYVALFNLYAVNGLWE 437

Query: 360 NAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYG 419
           +A+ +RK M +R  K+  G S IE +G+VHEF +GD  H +T+ IY   E++ ++++  G
Sbjct: 438 DAKALRKMMEERGAKKETGLSFIEWNGLVHEFRSGDTRHPQTRLIYALLEDMEQRLQLIG 497

Query: 420 YNVETRSVMFDIE-EEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAM 478
           Y  +T  V+ D++ EE+K   + YHSE+LALAFG++       IRIVKN+R+C DCH   
Sbjct: 498 YVKDTSQVLLDMDNEEDKGNTLSYHSERLALAFGILNIPHDMPIRIVKNLRVCRDCHVHA 557

Query: 479 KLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           KLVSK+++R+I +RDR  +H F DG CSC ++W
Sbjct: 558 KLVSKLYQREIIVRDRHRFHLFRDGVCSCNDFW 590


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/570 (36%), Positives = 322/570 (56%), Gaps = 63/570 (11%)

Query: 5   NSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKL 64
           N    + FV ++L+  Y  C +V   R VFD      +  WN+MI+GY RNG   + L L
Sbjct: 327 NDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALIL 386

Query: 65  FDKMPQ-----RNDVSWNSILGGLV----------------------------------- 84
           F +M +      N  +  S++   V                                   
Sbjct: 387 FIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYS 446

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD---------- 134
           R G +D +  +F+ M  R  VSW  +I+G+  +GR   AL L  EMQ ++          
Sbjct: 447 RMGKMDISETIFDSMEVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDN 506

Query: 135 -------LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC 187
                   +PN+  L+++L  CA L A+  G  +++Y  +  +  D  + +AL+DMYAKC
Sbjct: 507 DDEKGGPYKPNAITLMTVLPGCAALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKC 566

Query: 188 GSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG-----ISPDSIS 242
           G ++L+ +VF+   +K+V  +   I    M+G   EA ELF+NM ++        P+ ++
Sbjct: 567 GCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVT 626

Query: 243 YIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM 302
           +I V +ACSH G + +G   F+ M   HG++P  DHYAC+VDLLGRAG LEEA   + +M
Sbjct: 627 FITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTM 686

Query: 303 PMKPDNV-IWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361
           P + D V  W +LLGACR+H+N E+G+     L+  + N    Y+LLSNIY        A
Sbjct: 687 PAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKA 746

Query: 362 EEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYN 421
            EVRK MR+  +K+ PGCS IE    VH+F+AGD SH ++++++ F E + +K++  GY 
Sbjct: 747 MEVRKNMRQMGVKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYV 806

Query: 422 VETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLV 481
            +T  V+ +++E+EKE ++  HSEKLA+AFG++ T PG+ IR+ KN+R+C+DCH+A K +
Sbjct: 807 PDTSCVLHNVDEDEKENLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHAATKFI 866

Query: 482 SKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           SK+ +R+I +RD + +HHF++G+CSC +YW
Sbjct: 867 SKIMEREIIVRDVRRFHHFKEGTCSCGDYW 896



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 160/354 (45%), Gaps = 57/354 (16%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVR---------------- 54
           V V N+L+  Y  CG + D   VFD   D D VSWNS I    R                
Sbjct: 128 VTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQM 187

Query: 55  ------------------NGEILEGLKLFDKM-------PQRNDVSWNSILGGLVRFGSV 89
                             N  ++ GL+L  ++         +   + N+++    + G V
Sbjct: 188 ENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVGDQKTFTNNALMAMYAKLGRV 247

Query: 90  DDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
           DD+  +F     R +VSW  +IS F+Q+ R  EALA FR M    +E +   + S+L AC
Sbjct: 248 DDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPAC 307

Query: 150 AQLGALDYGNWVYSYIQKKCIKLD-SILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAY 208
           + L  LD G  +++Y+ +    ++ S + +AL+DMY  C  ++   +VF     + +  +
Sbjct: 308 SHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELW 367

Query: 209 TSAIFGLAMNGHSIEAFELF-ENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMF 267
            + I G A NG   +A  LF E +K  G+ P++ +  +V+ AC H          F +  
Sbjct: 368 NAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHC-------EAFSNKE 420

Query: 268 DVHGIKPEL----DHYA--CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
            +HG   +L    D Y    ++D+  R G ++ +E    SM ++ D V W T++
Sbjct: 421 SIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVR-DRVSWNTMI 473



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/394 (25%), Positives = 173/394 (43%), Gaps = 63/394 (15%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM-- 68
            F  N+L+  Y+  GRV D++ +F+   D D+VSWN+MI+ + ++    E L  F  M  
Sbjct: 231 TFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVL 290

Query: 69  --------------P-------------------QRNDVSWNSILGGLV-----RFGSVD 90
                         P                   + ND+  NS +G  +         V+
Sbjct: 291 EGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVE 350

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM-QSLDLEPNSAILVSLLSAC 149
              RVF+ +  R +  W  +ISG+A+NG  ++AL LF EM +   L PN+  + S++ AC
Sbjct: 351 SGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPAC 410

Query: 150 AQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYT 209
               A      ++ Y  K   K D  +  AL+DMY++ G +D++  +F S   +D  ++ 
Sbjct: 411 VHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWN 470

Query: 210 SAIFGLAMNGHSIEAFELFENMK-----------------SKGISPDSISYIAVLSACSH 252
           + I G  ++G    A  L   M+                      P++I+ + VL  C+ 
Sbjct: 471 TMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAA 530

Query: 253 LGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVI-W 311
           L  + KG    H+    + +  ++   + +VD+  + G L  +      MP K  NVI W
Sbjct: 531 LAAIAKG-KEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNK--NVITW 587

Query: 312 GTLLGACRVH-RNAEMGQRIGNMLIESDQNHDGR 344
             L+ AC +H +  E  +   NM+ E+ +  + +
Sbjct: 588 NVLIMACGMHGKGEEALELFKNMVAEAGRGGEAK 621



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 74/156 (47%), Gaps = 1/156 (0%)

Query: 100 PKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGN 159
           P RS  SWV  +    ++   +EA++ + EM      P++    ++L A + L  L  G 
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 160 WVYSYIQKKCIKLDSILCA-ALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
            +++   K      S+  A  L++MY KCG I    +VF    D+D  ++ S I  L   
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRF 172

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
               +A E F  M+ + +   S + ++V  ACS+LG
Sbjct: 173 EKWEQALEAFRAMQMENMELSSFTLVSVALACSNLG 208


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/549 (37%), Positives = 323/549 (58%), Gaps = 48/549 (8%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM-- 68
            F  N+L+  Y+  GRV D++ +F+   D D+VSWN+MI+ + ++    E L  F  M  
Sbjct: 148 TFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVL 207

Query: 69  --------------P-------------------QRNDVSWNSILGGLV-----RFGSVD 90
                         P                   + ND+  NS +G  +         V+
Sbjct: 208 EGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVE 267

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM-QSLDLEPNSAILVSLLSAC 149
              RVF+ +  R +  W  +ISG+A+NG  ++AL LF EM +   L PN+  + S++ AC
Sbjct: 268 SGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPAC 327

Query: 150 AQ-LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAY 208
              L A+  G  +++Y  +  +  D  + +AL+DMYAKCG ++L+ +VF+   +K+V  +
Sbjct: 328 VHSLAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITW 387

Query: 209 TSAIFGLAMNGHSIEAFELFENMKSKG-----ISPDSISYIAVLSACSHLGWVEKGFYYF 263
              I    M+G   EA ELF+NM ++        P+ +++I V +ACSH G + +G   F
Sbjct: 388 NVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLF 447

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNV-IWGTLLGACRVHR 322
           + M   HG++P  DHYAC+VDLLGRAG LEEA   + +MP + D V  W +LLGACR+H+
Sbjct: 448 YRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQ 507

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           N E+G+     L+  + N    Y+LLSNIY        A EVRK MR+  +K+ PGCS I
Sbjct: 508 NVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWI 567

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E    VH+F+AGD SH ++++++ F E + +K++  GY  +T  V+ +++E+EKE ++  
Sbjct: 568 EFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVLHNVDEDEKENLLCG 627

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSEKLA+AFG++ T PG+ IR+ KN+R+C+DCH+A K +SK+ +R+I +RD + +HHF++
Sbjct: 628 HSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHAATKFISKIMEREIIVRDVRRFHHFKE 687

Query: 503 GSCSCLEYW 511
           G+CSC +YW
Sbjct: 688 GTCSCGDYW 696



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 21/181 (11%)

Query: 100 PKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGN 159
           P RS  SWV  +    ++   +EA++ + EM      P++    ++L A + L  L  G 
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 160 WVYSYIQKKCIKLDSILCA---------------------ALIDMYAKCGSIDLAMQVFH 198
            +++   K      S+  A                     AL+ MYAK G +D +  +F 
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFE 172

Query: 199 SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEK 258
           S+ D+D+ ++ + I   + +    EA   F  M  +G+  D ++  +VL ACSHL  ++ 
Sbjct: 173 SFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDV 232

Query: 259 G 259
           G
Sbjct: 233 G 233



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 26/155 (16%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
            ++N  A D+ V ++L+  Y+ CG +  +R VF+E  + +V++WN +I     +G+  E 
Sbjct: 344 AIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEA 403

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
           L+LF  M                    V +A R     P    V+++ + +  + +G   
Sbjct: 404 LELFKNM--------------------VAEAGRGGEAKPNE--VTFITVFAACSHSGLIS 441

Query: 122 EALALFREMQ-SLDLEPNS---AILVSLLSACAQL 152
           E L LF  M+    +EP S   A +V LL    QL
Sbjct: 442 EGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQL 476


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/549 (37%), Positives = 315/549 (57%), Gaps = 41/549 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +  ++F  D+ + N ++  Y+ CG + +A+ +FD+    D+VSW  +I+GY ++G+  E 
Sbjct: 131 IQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEA 190

Query: 62  LKLFDKMP----QRNDVSWNSILGG----------------------------------- 82
           L LF KM     Q N+ + +S+L                                     
Sbjct: 191 LALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDM 250

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             R+  + +A  +FN +  +++VSW  LI+G A+ G  +  + LF +M     EP     
Sbjct: 251 YARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTY 310

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S+L ACA  G+L+ G WV++++ K   +  + +   LIDMYAK GSI  A +VF     
Sbjct: 311 SSVL-ACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVK 369

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           +D+ ++ S I G A +G   EA +LFE M    + P+ I++++VL+ACSH G +++G YY
Sbjct: 370 QDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYY 429

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F  M   H I+ ++ H+  +VDLLGRAG L EA  FI  MP+KP   +WG LLGACR+H+
Sbjct: 430 FELM-KKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGACRMHK 488

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           N ++G      + E D +  G ++LLSNIY    +  +A +VRK M++  +K+ P CS +
Sbjct: 489 NMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWV 548

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E++  VH F+A D SH   +EI + WE+I  KIK  GY  +T  V+F + ++++E  + Y
Sbjct: 549 EIENEVHVFVANDDSHPMREEIQRMWEKISGKIKEIGYVPDTSHVLFFMNQQDRELKLQY 608

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSEKLALAF ++ T PG  IRI KNIRIC DCHSA K  S+V  R+I +RD   +HHF  
Sbjct: 609 HSEKLALAFAVLKTPPGLTIRIKKNIRICGDCHSAFKFASRVLGREIIVRDTNRFHHFLH 668

Query: 503 GSCSCLEYW 511
           G CSC +YW
Sbjct: 669 GMCSCRDYW 677



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 87/183 (47%), Gaps = 2/183 (1%)

Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
           LEP   +   +L+ C  L  L  G  ++++IQ    + D +L   +++MYAKCGS++ A 
Sbjct: 101 LEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQ 160

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
            +F     KD+ ++T  I G + +G + EA  LF  M   G  P+  +  ++L A S  G
Sbjct: 161 DLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKA-SGTG 219

Query: 255 WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTL 314
             +      H+    +G    +   + ++D+  R   + EA+    S+  K + V W  L
Sbjct: 220 PSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAK-NVVSWNAL 278

Query: 315 LGA 317
           +  
Sbjct: 279 IAG 281


>gi|413937223|gb|AFW71774.1| hypothetical protein ZEAMMB73_242527 [Zea mays]
          Length = 625

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/505 (40%), Positives = 304/505 (60%), Gaps = 38/505 (7%)

Query: 13  VKNSLIQFYSVCGRVRDARWVFDES--DDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ 70
           V N L++ Y   G + DAR VFD S    LD  SWN+M++GY + G++    ++F +MP+
Sbjct: 153 VTNCLLKLYCALGMLSDARRVFDTSGATSLDAFSWNTMVSGYGKCGDLEAAREVFVRMPE 212

Query: 71  RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM 130
           R  VSW++++   +R G   +A R+F+QM          + +GF                
Sbjct: 213 RGLVSWSAMIDACIRAGEFSEALRMFDQM----------MGNGF---------------- 246

Query: 131 QSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDS---ILCAALIDMYAKC 187
                 P++ +L S+L ACA LGAL+ G WV+ +++ + +       +L  AL+DMY KC
Sbjct: 247 -----RPDAVVLSSVLKACAHLGALERGRWVHRFLKAEGLGRSPDNVMLETALVDMYCKC 301

Query: 188 GSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVL 247
           G +D A  VF     +DV  + + I GLAMNGH   A ELF  M   G  P+  +++ VL
Sbjct: 302 GCMDEAWWVFDGVQSQDVVLWNAMIGGLAMNGHGKRALELFRRMLDMGFVPNESTFVVVL 361

Query: 248 SACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPD 307
            AC+H G V++G   F SM D HGI+P  +HY C+ DLLGRAGLLEEAE  +  MPM+P 
Sbjct: 362 CACTHTGRVDEGKEIFRSMCD-HGIEPRREHYGCLADLLGRAGLLEEAEAVLLDMPMEPH 420

Query: 308 NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKT 367
              WG L+ +C +H N  +G+R+G  LIE + +  GRY++L N+Y      E+A+ +RK 
Sbjct: 421 ASQWGALMSSCLMHNNVGVGERVGKKLIELEPDDGGRYVVLFNLYAVNGLWEDAKALRKM 480

Query: 368 MRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSV 427
           M +R  K+  G S IE +G+VHEF +GD  H +T++IY   E++ ++++  GY  +T  V
Sbjct: 481 MEERGAKKETGLSFIEWNGLVHEFRSGDTRHPQTRQIYALLEDMEQRLQLIGYVKDTSQV 540

Query: 428 MFDI-EEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFK 486
           + D+ +EE+K   + YHSE+LALAFG++ T     IRIVKN+R+C DCH   KLVSK+++
Sbjct: 541 LMDMDDEEDKGNTLSYHSERLALAFGILNTPRHMPIRIVKNLRVCRDCHVYAKLVSKLYQ 600

Query: 487 RKISIRDRKHYHHFEDGSCSCLEYW 511
           R+I +RDR  +H F  G CSC ++W
Sbjct: 601 REIIMRDRHRFHLFRGGVCSCNDFW 625



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 101/237 (42%), Gaps = 42/237 (17%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
              + + D F  N+++  Y  CG +  AR VF    +  +VSW++MI+  +R GE  E L
Sbjct: 176 TSGATSLDAFSWNTMVSGYGKCGDLEAAREVFVRMPERGLVSWSAMIDACIRAGEFSEAL 235

Query: 63  KLFDKMP----QRNDVSWNSI------LGGLVR--------------------------- 85
           ++FD+M     + + V  +S+      LG L R                           
Sbjct: 236 RMFDQMMGNGFRPDAVVLSSVLKACAHLGALERGRWVHRFLKAEGLGRSPDNVMLETALV 295

Query: 86  -----FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
                 G +D+A  VF+ +  + +V W  +I G A NG  K AL LFR M  +   PN +
Sbjct: 296 DMYCKCGCMDEAWWVFDGVQSQDVVLWNAMIGGLAMNGHGKRALELFRRMLDMGFVPNES 355

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVF 197
             V +L AC   G +D G  ++  +    I+        L D+  + G ++ A  V 
Sbjct: 356 TFVVVLCACTHTGRVDEGKEIFRSMCDHGIEPRREHYGCLADLLGRAGLLEEAEAVL 412



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 19/174 (10%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           +V ++ +L+  Y  CG + +A WVFD     DVV WN+MI G   NG     L+LF +M 
Sbjct: 287 NVMLETALVDMYCKCGCMDEAWWVFDGVQSQDVVLWNAMIGGLAMNGHGKRALELFRRML 346

Query: 70  Q----RNDVSWNSILGGLVRFGSVDDACRVFNQM------PKRSLVSWVVLISGFAQNGR 119
                 N+ ++  +L      G VD+   +F  M      P+R    +  L     + G 
Sbjct: 347 DMGFVPNESTFVVVLCACTHTGRVDEGKEIFRSMCDHGIEPRRE--HYGCLADLLGRAGL 404

Query: 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD 173
            +EA A+  +M    +EP+++   +L+S+C     +  G      + KK I+L+
Sbjct: 405 LEEAEAVLLDMP---MEPHASQWGALMSSCLMHNNVGVGE----RVGKKLIELE 451


>gi|357496515|ref|XP_003618546.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355493561|gb|AES74764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 637

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 207/477 (43%), Positives = 314/477 (65%), Gaps = 12/477 (2%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N+++N YV+ G + E  K+F+ +  R+ VSW+  L GLV++ SV+    +F++MP+R+ V
Sbjct: 162 NALMNVYVKFGLVGEARKMFEGIEVRSVVSWSCFLEGLVKWESVESGRVLFDEMPERNEV 221

Query: 106 SWVVLISGFAQNGRPKEALALFREMQ-SLDLEPNSAILVSLLSACAQLGALDYGNWVYSY 164
           +W V+I G+  NG  KEA  L +EM        +   L S+LSAC+Q G +  G WV+ Y
Sbjct: 222 AWTVMIVGYVGNGFTKEAFLLLKEMVFGCGFRLSFVTLCSVLSACSQSGDVCVGRWVHCY 281

Query: 165 -IQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIE 223
            +++  +    ++  +L+DMYAKCG I+ A+ VF S   ++V A+ + + GLAM+G    
Sbjct: 282 AVKEMGLDFGVMVGTSLVDMYAKCGRINAALSVFRSMLKRNVVAWNAMLGGLAMHGMGKI 341

Query: 224 AFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMV 283
           A ++F +M  + + PD ++++A+LSACSH G VEKG+ YFH +  V+ IKPE++HYACMV
Sbjct: 342 AVDMFPSMVEE-VKPDGVTFMALLSACSHSGLVEKGWDYFHDLEPVYRIKPEIEHYACMV 400

Query: 284 DLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDG 343
            LLGRAG LEEAE  + +M + P+ V+ G+L+G+C  H   ++G++I   L+E D  +  
Sbjct: 401 GLLGRAGRLEEAEIMVKNMRIPPNEVVLGSLIGSCYAHGRLQLGEKIMRDLLEMDPLNTE 460

Query: 344 RYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQE 403
            +I+LSN+Y  + K E A  +R+ ++KR IK+ PG S I +DG +H+F+AGD+SH +T E
Sbjct: 461 YHIVLSNMYALSGKVEKANSLRQVLKKRGIKKVPGMSSIYVDGKLHQFIAGDKSHTRTSE 520

Query: 404 IYQFWEEIVKKIKNYGYNVETR-SVMF------DIEE--EEKETVIGYHSEKLALAFGLI 454
           IY   +E++ ++++ GY   T   V+F      D  E  EE E V+  HSEKLAL FGL+
Sbjct: 521 IYMKLDEMICRLRSAGYVPNTSCQVLFGCSNRDDCSESLEEVEQVLFTHSEKLALCFGLM 580

Query: 455 CTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            T  GS + I KN+RIC DCHSA+K+ SKV+KR+I +RDR  +H F+ GSCSC +YW
Sbjct: 581 STPSGSPLHIFKNLRICQDCHSAIKIASKVYKREIVVRDRYRFHSFKHGSCSCSDYW 637



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 118/265 (44%), Gaps = 43/265 (16%)

Query: 94  RVFNQMPK--RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           ++F+++P+  +  V +  LI    ++  P E+L LF +M+  DL  +  ++V  L+ACA+
Sbjct: 78  KLFDEIPQSHKDSVDYTALI----RHCPPFESLKLFIQMRQFDLPLDGVVMVCALNACAR 133

Query: 152 LGALD--YGNWVYSYIQK-KCIKLDSILCAALIDMYAKCG-------------------- 188
           LG  D   G+ ++  + K   +K D + C AL+++Y K G                    
Sbjct: 134 LGGGDTKVGSQMHVGVVKFGFVKFDKV-CNALMNVYVKFGLVGEARKMFEGIEVRSVVSW 192

Query: 189 -----------SIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMK-SKGI 236
                      S++    +F    +++  A+T  I G   NG + EAF L + M    G 
Sbjct: 193 SCFLEGLVKWESVESGRVLFDEMPERNEVAWTVMIVGYVGNGFTKEAFLLLKEMVFGCGF 252

Query: 237 SPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAE 296
               ++  +VLSACS  G V  G +         G+   +     +VD+  + G +  A 
Sbjct: 253 RLSFVTLCSVLSACSQSGDVCVGRWVHCYAVKEMGLDFGVMVGTSLVDMYAKCGRINAAL 312

Query: 297 NFIASMPMKPDNVIWGTLLGACRVH 321
           +   SM +K + V W  +LG   +H
Sbjct: 313 SVFRSM-LKRNVVAWNAMLGGLAMH 336



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 96/216 (44%), Gaps = 21/216 (9%)

Query: 9   YDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM 68
           + V V  SL+  Y+ CGR+  A  VF      +VV+WN+M+ G   +G     + +F  M
Sbjct: 290 FGVMVGTSLVDMYAKCGRINAALSVFRSMLKRNVVAWNAMLGGLAMHGMGKIAVDMFPSM 349

Query: 69  PQR---NDVSWNSILGGLVRFGSVDDACRVFNQMP-----KRSLVSWVVLISGFAQNGRP 120
            +    + V++ ++L      G V+     F+ +      K  +  +  ++    + GR 
Sbjct: 350 VEEVKPDGVTFMALLSACSHSGLVEKGWDYFHDLEPVYRIKPEIEHYACMVGLLGRAGRL 409

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCA-- 178
           +EA  + + M+   + PN  +L SL+ +C   G L  G      I +  +++D +     
Sbjct: 410 EEAEIMVKNMR---IPPNEVVLGSLIGSCYAHGRLQLGE----KIMRDLLEMDPLNTEYH 462

Query: 179 -ALIDMYAKCGSIDLA---MQVFHSYGDKDVSAYTS 210
             L +MYA  G ++ A    QV    G K V   +S
Sbjct: 463 IVLSNMYALSGKVEKANSLRQVLKKRGIKKVPGMSS 498


>gi|7362769|emb|CAB83139.1| putative protein [Arabidopsis thaliana]
          Length = 558

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/478 (42%), Positives = 302/478 (63%), Gaps = 39/478 (8%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D FV+ SL+  YS CG +R A+ VFD+S   D+ +WNS++N Y + G I +  KLFD+MP
Sbjct: 96  DPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMP 155

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE 129
           +RN +SW+ ++ G V  G   +A  +F +M                Q  +P EA      
Sbjct: 156 ERNVISWSCLINGYVMCGKYKEALDLFREM----------------QLPKPNEAF----- 194

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
                + PN   + ++LSAC +LGAL+ G WV++YI K  +++D +L  ALIDMYAKCGS
Sbjct: 195 -----VRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGS 249

Query: 190 IDLAMQVFHSYGD-KDVSAYTSAIFGLAMNGHSIEAFELFENM-KSKGISPDSISYIAVL 247
           ++ A +VF++ G  KDV AY++ I  LAM G + E F+LF  M  S  I+P+S++++ +L
Sbjct: 250 LERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGIL 309

Query: 248 SACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPD 307
            AC H G + +G  YF  M +  GI P + HY CMVDL GR+GL++EAE+FIASMPM+PD
Sbjct: 310 GACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPD 369

Query: 308 NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKT 367
            +IWG+LL   R+  + +  +     LIE D  + G Y+LLSN+Y +T  G   E + K 
Sbjct: 370 VLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKT--GRWMEGINKV 427

Query: 368 MRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSV 427
                    PGCS +E++GVVHEF+ GD S ++++ IY   +EI+++++  GY  +T+ V
Sbjct: 428 ---------PGCSYVEVEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEV 478

Query: 428 MFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVF 485
           + D+ E++KE  + YHSEKLA+AF L+ T+PG+ +RI+KN+RIC DCH     ++++F
Sbjct: 479 LLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLTGLALAEIF 536



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 115/266 (43%), Gaps = 48/266 (18%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V  +S + D+   NS++  Y+  G + DAR +FDE  + +V+SW+ +INGYV  G+  E 
Sbjct: 119 VFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEA 178

Query: 62  LKLFDKMP---------QRNDVSWNSILGGLVRF-------------------------- 86
           L LF +M          + N+ + +++L    R                           
Sbjct: 179 LDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGT 238

Query: 87  ---------GSVDDACRVFNQM-PKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD-L 135
                    GS++ A RVFN +  K+ + ++  +I   A  G   E   LF EM + D +
Sbjct: 239 ALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNI 298

Query: 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSIL-CAALIDMYAKCGSIDLAM 194
            PNS   V +L AC   G ++ G   +  + ++     SI     ++D+Y + G I  A 
Sbjct: 299 NPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAE 358

Query: 195 QVFHSYG-DKDVSAYTSAIFGLAMNG 219
               S   + DV  + S + G  M G
Sbjct: 359 SFIASMPMEPDVLIWGSLLSGSRMLG 384



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 98/240 (40%), Gaps = 40/240 (16%)

Query: 107 WVVLISGFAQN-GRPKE--ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYS 163
           W ++I     N   P+    ++++  M++  + P+      LL +      L  G   ++
Sbjct: 27  WNIIIRAIVHNVSSPQRHSPISVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRTHA 86

Query: 164 YIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSA------------ 211
            I    +  D  +  +L++MY+ CG +  A +VF   G KD+ A+ S             
Sbjct: 87  QILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDD 146

Query: 212 -------------------IFGLAMNGHSIEAFELFENMK-----SKGISPDSISYIAVL 247
                              I G  M G   EA +LF  M+        + P+  +   VL
Sbjct: 147 ARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVL 206

Query: 248 SACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPD 307
           SAC  LG +E+G  + H+  D + ++ ++     ++D+  + G LE A+    ++  K D
Sbjct: 207 SACGRLGALEQG-KWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKD 265


>gi|449479821|ref|XP_004155717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 745

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/541 (38%), Positives = 310/541 (57%), Gaps = 59/541 (10%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           +V +  +LI  Y   G +  A+ +FD      VVSW  MI G +R+  + EG K F++M 
Sbjct: 225 EVSMTTALIDMYCKGGCLASAQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKNFNRML 284

Query: 70  QR----NDVSWNSILG--GLV---------------------------------RFGSVD 90
           +     N+++  S++   G V                                 + G V 
Sbjct: 285 EEKLFPNEITLLSLITECGFVGTLDLGKWFHAYLLRNGFGMSLALVTALIDMYGKCGQVG 344

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
            A  +FN + K+ +  W VLIS +A      +   LF EM + D++PN+  +VSLLS CA
Sbjct: 345 YARALFNGVKKKDVKIWSVLISAYAHVSCMDQVFNLFVEMLNNDVKPNNVTMVSLLSLCA 404

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
           + GALD G W ++YI +  +++D IL  ALI+MYAKCG + +A  +F+    +D+  + +
Sbjct: 405 EAGALDLGKWTHAYINRHGLEVDVILETALINMYAKCGDVTIARSLFNEAMQRDIRMWNT 464

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            + G +M+G   EA ELF  M+S G+ P+ I+++++  ACSH G +E             
Sbjct: 465 MMAGFSMHGCGKEALELFSEMESHGVEPNDITFVSIFHACSHSGLME------------- 511

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
                  HY C+VDLLGRAG L+EA N I +MPM+P+ +IWG LL AC++H+N  +G+  
Sbjct: 512 -------HYGCLVDLLGRAGHLDEAHNIIENMPMRPNTIIWGALLAACKLHKNLALGEVA 564

Query: 331 GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHE 390
              ++E D  + G  +L SNIY    +  +   VR+ M    +K+ PG S IE+ G VH 
Sbjct: 565 ARKILELDPQNCGYSVLKSNIYASAKRWNDVTSVREAMSHSGMKKEPGLSWIEVSGSVHH 624

Query: 391 FLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALA 450
           F +GD++  +T ++Y+   E+  K++  GY   T +V+ +I+EEEKE+ + YHSEKLA A
Sbjct: 625 FKSGDKACTQTTKVYEMVTEMCIKLRESGYTPNTAAVLLNIDEEEKESALSYHSEKLATA 684

Query: 451 FGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEY 510
           FGLI T PG+ IRIVKN+RIC DCH+A KL+SK++ R I +RDR  +HHF +G CSC+ Y
Sbjct: 685 FGLISTAPGTPIRIVKNLRICDDCHAATKLLSKIYGRTIIVRDRNRFHHFSEGYCSCMGY 744

Query: 511 W 511
           W
Sbjct: 745 W 745



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 101/359 (28%), Positives = 174/359 (48%), Gaps = 43/359 (11%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           KN FA DVFV N+L+  Y  CG +  AR VFD+  + DVVSW +M+  YVR+    E L+
Sbjct: 116 KNGFASDVFVCNALMNMYEKCGCLVSARLVFDQMPERDVVSWTTMLGCYVRSKAFGEALR 175

Query: 64  LFDKMP----------------------------------------QRNDVSWNSILGGL 83
           L  +M                                         ++ +VS  + L  +
Sbjct: 176 LVREMQFVGVKLSGVALISLIAVFGNLLDMKSGRAVHGYIVRNVGDEKMEVSMTTALIDM 235

Query: 84  -VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G +  A R+F+++ KRS+VSW V+I+G  ++ R  E    F  M    L PN   L
Sbjct: 236 YCKGGCLASAQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKNFNRMLEEKLFPNEITL 295

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           +SL++ C  +G LD G W ++Y+ +    +   L  ALIDMY KCG +  A  +F+    
Sbjct: 296 LSLITECGFVGTLDLGKWFHAYLLRNGFGMSLALVTALIDMYGKCGQVGYARALFNGVKK 355

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           KDV  ++  I   A      + F LF  M +  + P++++ +++LS C+  G ++ G  +
Sbjct: 356 KDVKIWSVLISAYAHVSCMDQVFNLFVEMLNNDVKPNNVTMVSLLSLCAEAGALDLG-KW 414

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            H+  + HG++ ++     ++++  + G +  A +   +  M+ D  +W T++    +H
Sbjct: 415 THAYINRHGLEVDVILETALINMYAKCGDVTIARSLF-NEAMQRDIRMWNTMMAGFSMH 472



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 114/244 (46%), Gaps = 4/244 (1%)

Query: 96  FNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEP-NSAILVSLLSACAQLGA 154
           F+Q       ++ +LIS +  N  P+ +   +  M+S D    ++ IL SLL ACAQ  +
Sbjct: 44  FSQSHFTPEANYNLLISSYTNNHLPQASFNCYLHMRSNDAAALDNFILPSLLKACAQASS 103

Query: 155 LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFG 214
            D G  ++ + QK     D  +C AL++MY KCG +  A  VF    ++DV ++T+ +  
Sbjct: 104 GDLGRELHGFAQKNGFASDVFVCNALMNMYEKCGCLVSARLVFDQMPERDVVSWTTMLGC 163

Query: 215 LAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG-FYYFHSMFDVHGIK 273
              +    EA  L   M+  G+    ++ I++++   +L  ++ G   + + + +V   K
Sbjct: 164 YVRSKAFGEALRLVREMQFVGVKLSGVALISLIAVFGNLLDMKSGRAVHGYIVRNVGDEK 223

Query: 274 PELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC-RVHRNAEMGQRIGN 332
            E+     ++D+  + G L  A+     +  K   V W  ++  C R  R  E  +    
Sbjct: 224 MEVSMTTALIDMYCKGGCLASAQRLFDRLS-KRSVVSWTVMIAGCIRSCRLDEGAKNFNR 282

Query: 333 MLIE 336
           ML E
Sbjct: 283 MLEE 286



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 113/290 (38%), Gaps = 96/290 (33%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++N F   + +  +LI  Y  CG+V  AR +F+     DV  W+ +I+ Y     + + 
Sbjct: 318 LLRNGFGMSLALVTALIDMYGKCGQVGYARALFNGVKKKDVKIWSVLISAYAHVSCMDQV 377

Query: 62  LKLFDKMPQRNDVSWNSIL-----------GGL--------------------------- 83
             LF +M   NDV  N++            G L                           
Sbjct: 378 FNLFVEM-LNNDVKPNNVTMVSLLSLCAEAGALDLGKWTHAYINRHGLEVDVILETALIN 436

Query: 84  --VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G V  A  +FN+  +R +  W  +++GF+ +G  KEAL LF EM+S  +EPN   
Sbjct: 437 MYAKCGDVTIARSLFNEAMQRDIRMWNTMMAGFSMHGCGKEALELFSEMESHGVEPNDIT 496

Query: 142 LVSLLSACAQLGALD-YGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
            VS+  AC+  G ++ YG                     L+D+  + G +D         
Sbjct: 497 FVSIFHACSHSGLMEHYG--------------------CLVDLLGRAGHLD--------- 527

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250
                                 EA  + ENM  +   P++I + A+L+AC
Sbjct: 528 ----------------------EAHNIIENMPMR---PNTIIWGALLAAC 552



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 23/157 (14%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           ++    DV ++ +LI  Y+ CG V  AR +F+E+   D+  WN+M+ G+  +G   E L+
Sbjct: 421 RHGLEVDVILETALINMYAKCGDVTIARSLFNEAMQRDIRMWNTMMAGFSMHGCGKEALE 480

Query: 64  LFDKMP----QRNDVSWNSIL------------GGLV----RFGSVDDACRVFNQMPKR- 102
           LF +M     + ND+++ SI             G LV    R G +D+A  +   MP R 
Sbjct: 481 LFSEMESHGVEPNDITFVSIFHACSHSGLMEHYGCLVDLLGRAGHLDEAHNIIENMPMRP 540

Query: 103 SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS 139
           + + W  L++  A       AL      + L+L+P +
Sbjct: 541 NTIIWGALLA--ACKLHKNLALGEVAARKILELDPQN 575


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 204/550 (37%), Positives = 317/550 (57%), Gaps = 40/550 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           + ++  + DV + N+LI  Y+ CG +  AR +F      D++SWN++I GY R  +  E 
Sbjct: 356 ISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEA 415

Query: 62  LKLFDKM------PQR---------------------------------NDVSWNSILGG 82
           ++L+ +M      P R                                 N    N+++  
Sbjct: 416 MRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNM 475

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             R GS+ +A  VF     R ++SW  +I+G AQ+G  + A  LF+EMQ+ +LEP++   
Sbjct: 476 YRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITF 535

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S+LS C    AL+ G  ++  I +  ++LD  L  ALI+MY +CGS+  A  VFHS   
Sbjct: 536 ASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQH 595

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGI-SPDSISYIAVLSACSHLGWVEKGFY 261
           +DV ++T+ I G A  G  ++A ELF  M+++G   PD  ++ ++LSAC+H G V +G+ 
Sbjct: 596 RDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQ 655

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            F SM   +G+ P ++HY C+V LLGRA   +EAE  I  MP  PD  +W TLLGACR+H
Sbjct: 656 IFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIH 715

Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
            N  + +   N  ++ +  +   YILLSN+Y    + ++  ++R+ M  R I++ PG S 
Sbjct: 716 GNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSW 775

Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIG 441
           IE+D ++HEF+A DRSH +T EIY   + +  +++  GY  +T+ V+ D+ +  +ET + 
Sbjct: 776 IEVDNIIHEFIAADRSHPETAEIYAELKRLSVEMEEAGYFPDTQHVLHDLGKAHQETSLC 835

Query: 442 YHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
            HSE+LA+A+GLI T PG+ IRI KN+RIC DCH+A K +SK+  R+I  RD   +H F+
Sbjct: 836 THSERLAIAYGLIKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHSFK 895

Query: 502 DGSCSCLEYW 511
           +G CSC +YW
Sbjct: 896 NGKCSCEDYW 905



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/355 (27%), Positives = 162/355 (45%), Gaps = 41/355 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +V+     D+F+ N LI  Y  C  V DA  VF E    DV+SWNS+I+ Y + G   + 
Sbjct: 53  MVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKA 112

Query: 62  LKLFDKMP---------------------------------------QRNDVSWNSILGG 82
            +LF++M                                        QR+    NS+L  
Sbjct: 113 FQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSM 172

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G +  A +VF  +  R +VS+  ++  +AQ    KE L LF +M S  + P+    
Sbjct: 173 YGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTY 232

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           ++LL A      LD G  ++    ++ +  D  +  AL+ M  +CG +D A Q F    D
Sbjct: 233 INLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIAD 292

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           +DV  Y + I  LA +GH++EAFE +  M+S G++ +  +Y+++L+ACS    +E G   
Sbjct: 293 RDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAG-KL 351

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
            HS     G   ++     ++ +  R G L +A     +MP K D + W  ++  
Sbjct: 352 IHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMP-KRDLISWNAIIAG 405



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/357 (27%), Positives = 172/357 (48%), Gaps = 41/357 (11%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + V+     D+ V  +L+     CG V  A+  F    D DVV +N++I    ++G  +E
Sbjct: 254 LTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVE 313

Query: 61  GLKLFDKMPQR----NDVSWNSIL-----------GGLV--------------------- 84
             + + +M       N  ++ SIL           G L+                     
Sbjct: 314 AFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALIS 373

Query: 85  ---RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              R G +  A  +F  MPKR L+SW  +I+G+A+     EA+ L+++MQS  ++P    
Sbjct: 374 MYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVT 433

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
            + LLSACA   A   G  ++  I +  IK +  L  AL++MY +CGS+  A  VF    
Sbjct: 434 FLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQ 493

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
            +DV ++ S I G A +G    A++LF+ M+++ + PD+I++ +VLS C +   +E G  
Sbjct: 494 ARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELG-K 552

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
             H      G++ +++    ++++  R G L++A N   S+  + D + W  ++G C
Sbjct: 553 QIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHR-DVMSWTAMIGGC 608



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 109/448 (24%), Positives = 196/448 (43%), Gaps = 79/448 (17%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K  +  D  V+NSL+  Y  CG +  AR VF      DVVS+N+M+  Y +   + E 
Sbjct: 154 IIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKEC 213

Query: 62  LKLFDKMPQR----NDVSWNSILGGL---------------------------------- 83
           L LF +M       + V++ ++L                                     
Sbjct: 214 LGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTM 273

Query: 84  -VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
            VR G VD A + F  +  R +V +  LI+  AQ+G   EA   +  M+S  +  N    
Sbjct: 274 CVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTY 333

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           +S+L+AC+   AL+ G  ++S+I +     D  +  ALI MYA+CG +  A ++F++   
Sbjct: 334 LSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPK 393

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           +D+ ++ + I G A      EA  L++ M+S+G+ P  ++++ +LSAC++      G   
Sbjct: 394 RDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADG-KM 452

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENF------------------------ 298
            H      GIK        ++++  R G L EA+N                         
Sbjct: 453 IHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGS 512

Query: 299 ----------IASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD---GRY 345
                     + +  ++PDN+ + ++L  C+     E+G++I   + ES    D   G  
Sbjct: 513 YETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNA 572

Query: 346 ILLSNIYVETLKGENAEEVRKTMRKRKI 373
           ++  N+Y+     ++A  V  +++ R +
Sbjct: 573 LI--NMYIRCGSLQDARNVFHSLQHRDV 598



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 78/245 (31%), Positives = 127/245 (51%), Gaps = 2/245 (0%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136
           N ++   V+  SV DA +VF +MP+R ++SW  LIS +AQ G  K+A  LF EMQ+    
Sbjct: 66  NLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFI 125

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
           PN    +S+L+AC     L+ G  ++S I K   + D  +  +L+ MY KCG +  A QV
Sbjct: 126 PNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQV 185

Query: 197 FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWV 256
           F     +DV +Y + +   A   +  E   LF  M S+GISPD ++YI +L A +    +
Sbjct: 186 FAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSML 245

Query: 257 EKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLG 316
           ++G    H +    G+  ++     +V +  R G ++ A+     +  + D V++  L+ 
Sbjct: 246 DEG-KRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADR-DVVVYNALIA 303

Query: 317 ACRVH 321
           A   H
Sbjct: 304 ALAQH 308



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 90/186 (48%), Gaps = 2/186 (1%)

Query: 131 QSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSI 190
           Q    E + A  V+LL  C +   L     +++ + +  +  D  L   LI+MY KC S+
Sbjct: 19  QPRPTETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSV 78

Query: 191 DLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250
             A QVF     +DV ++ S I   A  G   +AF+LFE M++ G  P+ I+YI++L+AC
Sbjct: 79  LDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTAC 138

Query: 251 SHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVI 310
                +E G    HS     G + +      ++ + G+ G L  A    A +  + D V 
Sbjct: 139 YSPAELENG-KKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPR-DVVS 196

Query: 311 WGTLLG 316
           + T+LG
Sbjct: 197 YNTMLG 202


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/549 (37%), Positives = 316/549 (57%), Gaps = 39/549 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K     D F+   LI  YS C  + DAR VF    + D+++WN++I+G+ +N E  E 
Sbjct: 238 LIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEA 297

Query: 62  LKLFDKMPQR----NDVSWNSILGGLV--------------------------------- 84
             LF  M       N  + +++L  +                                  
Sbjct: 298 ASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDT 357

Query: 85  --RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G V+DA RVF + P   LV +  L++ +AQ+G+ +EAL L+ EMQ   ++P+S + 
Sbjct: 358 YGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVC 417

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            SLL+ACA L A + G  V+ +I K     D     +L++MYAKCGSI+ A   F     
Sbjct: 418 SSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPV 477

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           + + ++++ I GLA +G+  EA +LF+ M   G+ P+ I+ ++VL AC+H G V +  +Y
Sbjct: 478 RGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHY 537

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F+SM  + GI+P  +HYACM+DLLGRAG LE A   +  MP + + ++WG LLGA R+H+
Sbjct: 538 FNSMKILFGIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQANALVWGALLGAARIHK 597

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           N ++G++   ML+  +    G ++LL+NIY      +    VR+ M+  K+K+ PG S +
Sbjct: 598 NIDLGEQAAEMLLALEPEKSGTHVLLANIYASVGMWDKVARVRRLMKDGKVKKEPGMSWL 657

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E+   V+ F+ GDRSH ++ EIY   +E+   +K  GY       + D+E  EKE ++ +
Sbjct: 658 EVKDKVYTFIVGDRSHSRSTEIYAKLDELSDLLKKAGYVPMVEIDLHDVERSEKEQLLYH 717

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSEKLA+AFGLI T PG+ IR+ KN+RIC DCH+ +K +SK+  R+I +RD   +HHF +
Sbjct: 718 HSEKLAVAFGLIATPPGAPIRVKKNLRICFDCHTVLKFISKIVSREIIVRDTNRFHHFRE 777

Query: 503 GSCSCLEYW 511
           GSCSC EYW
Sbjct: 778 GSCSCGEYW 786



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 115/402 (28%), Positives = 177/402 (44%), Gaps = 72/402 (17%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +VV   F  D FV NSL+  Y+ CG   DAR +FD   D  VVSWN++ + YV +    E
Sbjct: 35  IVVVTGFDSDEFVANSLVILYAKCGGFGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGE 94

Query: 61  GLKLFDKMP----QRNDVSWNSIL----------------GGLVRFGS------------ 88
            + LF  M     + N+ S +S++                G L++ G             
Sbjct: 95  AVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVD 154

Query: 89  -------VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
                  ++DA  VF+++ K  +VSW  +I+G   +     AL L REM    + PN   
Sbjct: 155 MYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFT 214

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           L S L ACA +   + G  ++S + K  +  DS L   LIDMY+KC S+D A  VF    
Sbjct: 215 LSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMP 274

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS---------- 251
           ++D+ A+ + I G + N    EA  LF  M ++GI  +  +   VL + +          
Sbjct: 275 ERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQ 334

Query: 252 -HLGWVEKGF----YYFHSMFDVHGI-------------KPELD--HYACMVDLLGRAGL 291
            H   ++ GF    Y  +S+ D +G               P +D   +  +V    + G 
Sbjct: 335 IHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQ 394

Query: 292 LEEAENFIASMP---MKPDNVIWGTLLGACRVHRNAEMGQRI 330
            EEA      M    +KPD+ +  +LL AC      E G+++
Sbjct: 395 GEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQV 436



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 112/264 (42%), Gaps = 14/264 (5%)

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
           M  L ++ N     S+L AC     L  G  V+  +       D  +  +L+ +YAKCG 
Sbjct: 1   MHLLGIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGG 60

Query: 190 IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
              A  +F +  D+ V ++ +       +    EA  LF +M   GI P+  S  ++++ 
Sbjct: 61  FGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINV 120

Query: 250 CSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNV 309
           C+ L    +G    H      G   +      +VD+  + G+LE+A +    +  KPD V
Sbjct: 121 CTGLEDSVQG-RKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIA-KPDIV 178

Query: 310 IWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMR 369
            W  ++  C +H   E   R   +L E +++      +  N++  +    +A +    M 
Sbjct: 179 SWNAIIAGCVLH---EYHHRALELLREMNKSG-----MCPNMFTLS----SALKACAGMA 226

Query: 370 KRKIKRAPGCSLIELDGVVHEFLA 393
            R++ R    SLI++D     FL 
Sbjct: 227 LRELGRQLHSSLIKMDMGSDSFLG 250


>gi|224141427|ref|XP_002324074.1| predicted protein [Populus trichocarpa]
 gi|222867076|gb|EEF04207.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/514 (40%), Positives = 318/514 (61%), Gaps = 19/514 (3%)

Query: 16  SLIQFYSVCGRVRDARW-------VFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM 68
           ++I  + +C RV D          +      L V   N+++N YV+ G + E  ++F +M
Sbjct: 124 AMISVFVLCTRVEDLGMGRQAQGCLVKMGLGLGVKVCNAIMNMYVKCGLVEEVRRVFCEM 183

Query: 69  PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFR 128
            +RN VSW+++L G+V++  V++   VF++MP+R+ V W ++I+G+  NG  +E   L  
Sbjct: 184 NERNVVSWSTLLEGVVKWEGVENGRVVFDEMPERNEVGWTIMIAGYVGNGFSREGFLLLD 243

Query: 129 EM-QSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCA-ALIDMYAK 186
           EM     L  N   L S+LSACAQ G +  G WV+ Y  K   +   I+   AL+DMYAK
Sbjct: 244 EMVLRFRLGLNFVTLSSILSACAQSGDVLMGRWVHVYALKGMGREMHIMVGTALVDMYAK 303

Query: 187 CGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAV 246
           CG ID+A +VF     ++V A+ + + GLAM+G      ++F  M  +   PD ++++AV
Sbjct: 304 CGPIDMAFKVFKYLPKRNVVAWNAMLGGLAMHGRGKFVLDIFPKMIEEA-KPDDLTFMAV 362

Query: 247 LSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKP 306
           LSACSH G V++G++YF S+   +G  P+++HYACMVD+LGRAG LEEA   I  MPM P
Sbjct: 363 LSACSHSGLVDQGYHYFRSLESEYGTTPKIEHYACMVDILGRAGHLEEAVMLIKKMPMCP 422

Query: 307 DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRK 366
           + V+ G+LLG+C  H   ++G+RI   LI+ D ++   ++LLSN+YV   K + A  +R+
Sbjct: 423 NEVVLGSLLGSCNAHGKLQLGERILQELIQMDGHNTEYHVLLSNMYVLEGKQDKANSLRQ 482

Query: 367 TMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRS 426
            ++ + I++ PG S I + G +H+F AGD+SH  T+EIY     ++++++  GY   T +
Sbjct: 483 ILKSKGIRKVPGVSSIYVGGNIHQFSAGDKSHPLTKEIYHALNNMIQRLRLAGYVPNTTN 542

Query: 427 VMF---------DIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSA 477
            +F           E EEKE  +  HSEKLA+ FG I TKPG+ + I KN+RIC DCHSA
Sbjct: 543 QVFPGSDGREGSSEEMEEKEQALFLHSEKLAVCFGHISTKPGAPLYIFKNLRICQDCHSA 602

Query: 478 MKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           +K+VSK++ R+I IRDR  +H F+ GSCSC +YW
Sbjct: 603 IKIVSKIYNREIVIRDRNRFHCFKHGSCSCSDYW 636



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 62/291 (21%), Positives = 120/291 (41%), Gaps = 36/291 (12%)

Query: 87  GSVDDACRVFNQMPK--RSLVSWVVLISGFAQNG-RPKEALALFREMQSLDLEPNSAILV 143
           G    A  +F Q+P+  + +  W  L++   Q+G +P E    F+EM+   +  +   ++
Sbjct: 67  GVTSSARHLFYQIPRSHKDVTDWTTLLTSLVQHGTKPSEGFFFFKEMRKEGVVLDDVAMI 126

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           S+   C ++  L  G      + K  + L   +C A+++MY KCG ++   +VF    ++
Sbjct: 127 SVFVLCTRVEDLGMGRQAQGCLVKMGLGLGVKVCNAIMNMYVKCGLVEEVRRVFCEMNER 186

Query: 204 DVSAYTS-------------------------------AIFGLAMNGHSIEAFELFENMK 232
           +V ++++                                I G   NG S E F L + M 
Sbjct: 187 NVVSWSTLLEGVVKWEGVENGRVVFDEMPERNEVGWTIMIAGYVGNGFSREGFLLLDEMV 246

Query: 233 SK-GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGL 291
            +  +  + ++  ++LSAC+  G V  G +         G +  +     +VD+  + G 
Sbjct: 247 LRFRLGLNFVTLSSILSACAQSGDVLMGRWVHVYALKGMGREMHIMVGTALVDMYAKCGP 306

Query: 292 LEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD 342
           ++ A      +P K + V W  +LG   +H   +    I   +IE  +  D
Sbjct: 307 IDMAFKVFKYLP-KRNVVAWNAMLGGLAMHGRGKFVLDIFPKMIEEAKPDD 356


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 204/550 (37%), Positives = 317/550 (57%), Gaps = 40/550 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRN------ 55
           VV      D++V NSL+  Y+  G +  AR VFD   + D+ SWN+MI+GY +N      
Sbjct: 187 VVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADSGTA 246

Query: 56  ----------------------------------GEILEGLKLFDKMPQRNDVSWNSILG 81
                                             G+++ G  + + +   N    NS++ 
Sbjct: 247 FLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIE 306

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
                  + DA R+F ++  +  VSW  +I G+A+NG   E+L LFR M      P+   
Sbjct: 307 MYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVT 366

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
            +++L AC Q+ AL YG  ++SY+ KK    ++I+  AL+DMY+KCGS+  + +VF    
Sbjct: 367 FIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMP 426

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
           DK + ++++ + G  ++G   EA  + + MK+  + PD+  + ++LSACSH G V +G  
Sbjct: 427 DKSLVSWSAMVAGYGLHGRGREAISILDGMKANSVIPDNGVFTSILSACSHAGLVVEGKE 486

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            F+ M   + +KP L HY+CMVDLLGRAG L+EA   I +M +KP + IW  LL A R+H
Sbjct: 487 IFYKMEKEYNVKPALSHYSCMVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLTASRLH 546

Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
           +N ++ +     + + +      YI LSNIY    + ++ E VR  +R++ +K++PGCS 
Sbjct: 547 KNIKLAEISAQKVFDMNPKVVSSYICLSNIYAAEKRWDDVERVRAMVRRKGLKKSPGCSF 606

Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIG 441
           IELD +VH FL GD+SH++T++IY    E+ +++K  GY  +T  V +D+EEE KE ++ 
Sbjct: 607 IELDNMVHRFLVGDKSHQQTEDIYAKLNELKQQLKEAGYKPDTSLVFYDVEEEVKEKMLW 666

Query: 442 YHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
            HSE+LA+AF LI T PG+VIRI KN+R+C DCH+  KL+S++  R+I +RD   +HHF 
Sbjct: 667 DHSERLAIAFALINTGPGTVIRITKNLRVCGDCHTVTKLISELTGREIIMRDIHRFHHFI 726

Query: 502 DGSCSCLEYW 511
            G CSC +YW
Sbjct: 727 KGFCSCGDYW 736



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/352 (27%), Positives = 147/352 (41%), Gaps = 42/352 (11%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM- 68
           + ++   L  FY+ CG +  A  +FD     +   WN MI GY  NG  ++ L L+ +M 
Sbjct: 94  NTYLNTKLAAFYAGCGLMSQAEVIFDGIVLKNSFLWNFMIRGYASNGLPMKSLVLYREML 153

Query: 69  --PQRND------------------------------------VSWNSILGGLVRFGSVD 90
              QR D                                       NS+L    +FG + 
Sbjct: 154 CFGQRADNFTYPFVLKACGDLLLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMG 213

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
            A  VF++M +R L SW  +ISG+A+N     A  +F  M    L  +   L+ LLSACA
Sbjct: 214 TARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACA 273

Query: 151 QLGALDYGNWVYSYIQKKCI-KLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYT 209
            L A+  G  ++ Y  +  I   +     +LI+MY  C  +  A ++F     KD  ++ 
Sbjct: 274 DLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWN 333

Query: 210 SAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDV 269
           S I G A NG + E+  LF  M   G  PD +++IAVL AC  +  +  G    HS    
Sbjct: 334 SMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGM-SIHSYLVK 392

Query: 270 HGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            G          +VD+  + G L  +      MP K   V W  ++    +H
Sbjct: 393 KGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDK-SLVSWSAMVAGYGLH 443



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 5/185 (2%)

Query: 144 SLLSACAQLGALDYGNWVYSY-IQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           +LL +     +   G  ++++ I    ++ ++ L   L   YA CG +  A  +F     
Sbjct: 64  ALLQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVL 123

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           K+   +   I G A NG  +++  L+  M   G   D+ +Y  VL AC  L  VE G   
Sbjct: 124 KNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIG-RR 182

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
            HS   V G++ ++     ++ +  + G +  A      M  + D   W T++      +
Sbjct: 183 VHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAER-DLTSWNTMISG--YAK 239

Query: 323 NAEMG 327
           NA+ G
Sbjct: 240 NADSG 244


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 195/480 (40%), Positives = 299/480 (62%)

Query: 32  WVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDD 91
           +V D    +D     ++IN Y   G +    K++D +  ++ +   ++L G  + G V D
Sbjct: 247 FVKDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKD 306

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           A  +F+QM +R LV W  +ISG+A++ +P+EAL LF EM      P+   ++S++SAC+ 
Sbjct: 307 ARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSH 366

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSA 211
           +GAL   NW+++Y+ +        +  ALIDMYAKCG++  A +VF +   K+V +++S 
Sbjct: 367 VGALAQANWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSM 426

Query: 212 IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG 271
           I   AM+G++  A +LF  MK   I P+ +++I VL AC H G VE+G   F SM + HG
Sbjct: 427 INAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHG 486

Query: 272 IKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIG 331
           I P  +HY CMVDL  RA  L +A   I +MP  P+ +IWG+L+ AC+VH  AE+G+   
Sbjct: 487 ISPTREHYGCMVDLYCRANFLRKAIELIETMPFAPNVIIWGSLMSACQVHGEAELGEFAA 546

Query: 332 NMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEF 391
             L+E + +HDG  ++LSNIY +  +  +   +RK+M  + I +    S IE++  VH F
Sbjct: 547 KRLLELEPDHDGALVVLSNIYAKEKRWNDVGLIRKSMSYKGISKEKASSRIEINNQVHMF 606

Query: 392 LAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAF 451
           +  DR H+++ EIY+  +E+V K+K  GY   T  ++ D+EEE+K+ ++ +HSEKLA+ +
Sbjct: 607 MMADRYHKQSDEIYEKLDEVVSKLKLVGYKPSTSGILIDLEEEDKKELVLWHSEKLAVCY 666

Query: 452 GLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           GLI  +  S IRIVKN+RIC DCHS MKLVSKV++ +I +RDR  +HH   G CSC +YW
Sbjct: 667 GLISRRNESCIRIVKNLRICEDCHSFMKLVSKVYQIEIVVRDRTRFHHCSGGICSCRDYW 726



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 165/340 (48%), Gaps = 39/340 (11%)

Query: 40  LDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGS----VDDACRV 95
           LD  S+ S++    +      GL++     +   V    I  GL+   +    + DA  +
Sbjct: 119 LDRFSFPSLLKAVSKVSAFNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLL 178

Query: 96  FNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGAL 155
           F++M     V+W ++I G+ QNG   +AL LF +M+S D++P+S IL ++LSAC   G L
Sbjct: 179 FDKMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNL 238

Query: 156 DYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK------------ 203
            YG  ++ +++     +DS L  ALI+MYA CG++DLA +++     K            
Sbjct: 239 SYGRTIHEFVKDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGY 298

Query: 204 -------------------DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYI 244
                              D+  +++ I G A +    EA +LF+ M  K   PD I+ +
Sbjct: 299 AKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITML 358

Query: 245 AVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPM 304
           +V+SACSH+G + +   + H+  D  G    L     ++D+  + G L +A     +MP 
Sbjct: 359 SVISACSHVGALAQA-NWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPR 417

Query: 305 KPDNVI-WGTLLGACRVHRNAEMGQRIGNMLIESDQNHDG 343
           K  NVI W +++ A  +H NA+   ++   + E +   +G
Sbjct: 418 K--NVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNG 455



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/355 (22%), Positives = 143/355 (40%), Gaps = 110/355 (30%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGR-------------------------------VRDA 30
           V  N +A D  ++ +LI  Y+ CG                                V+DA
Sbjct: 248 VKDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDA 307

Query: 31  RWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDV---------------- 74
           R++FD+  + D+V W++MI+GY  + +  E LKLFD+M Q+  V                
Sbjct: 308 RFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHV 367

Query: 75  ------SW-----------------NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLI 111
                 +W                 N+++    + G++  A  VF  MP+++++SW  +I
Sbjct: 368 GALAQANWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMI 427

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVY-SYIQKKCI 170
           + FA +G    A+ LFR M+ +++EPN    + +L AC   G ++ G  ++ S I +  I
Sbjct: 428 NAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGI 487

Query: 171 KLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFEN 230
                    ++D+Y +   +                                +A EL E 
Sbjct: 488 SPTREHYGCMVDLYCRANFLR-------------------------------KAIELIET 516

Query: 231 MKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL 285
           M     +P+ I + +++SAC   G  E G +    + ++     E DH   +V L
Sbjct: 517 MP---FAPNVIIWGSLMSACQVHGEAELGEFAAKRLLEL-----EPDHDGALVVL 563


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/549 (37%), Positives = 316/549 (57%), Gaps = 40/549 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++++ F +D+ + N+L+  Y+ CG + +AR VFD+  + D V+W ++I+GY ++    + 
Sbjct: 77  LIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVFDKMPERDFVTWTTLISGYSQHDRPFDA 136

Query: 62  LKLFDKMPQ----RNDVSWNSILGG----------------------------------- 82
           L LF++M +     N+ + +S++                                     
Sbjct: 137 LVLFNQMLRFGFSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDL 196

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             R+G +DDA  VF+ +  R+ VSW  LI+G A+    ++AL LF+ M      P+    
Sbjct: 197 YTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRCGTEKALELFQGMLREGFRPSHFSY 256

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            SL  AC+  G L+ G WV++Y+ K   KL +     L+DMYAK GSI  A ++F     
Sbjct: 257 ASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAK 316

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           +DV ++ S +   A +G   EA   FE M+  GI P+ IS+++VL+ACSH G +++G++Y
Sbjct: 317 RDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGGIRPNEISFLSVLTACSHSGLLDEGWHY 376

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           +  M    GI  E  HY  +VDLLGRAG L  A  FI  MP++P   IW  LL ACR+H+
Sbjct: 377 YELM-KKDGIVLEAWHYVTIVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHK 435

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           N E+G      + E D +  G +++L NIY    +  +A  VRK M++  +K+ P CS +
Sbjct: 436 NTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWV 495

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E++  +H F+A D  H + +EI + WEE++ KIK  GY  +T  V+  ++++E+E  + Y
Sbjct: 496 EIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQY 555

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSEK+ALAF L+ T PGS I I KNIR+C DCHSA+KL SK   R+I +RD   +HHF+D
Sbjct: 556 HSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHSAIKLASKAVGREIIVRDTNRFHHFKD 615

Query: 503 GSCSCLEYW 511
           G+CSC +YW
Sbjct: 616 GACSCKDYW 624



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 138/269 (51%), Gaps = 3/269 (1%)

Query: 53  VRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLIS 112
           +  G I+ G  L   + + + V  N++L    + GS+++A +VF++MP+R  V+W  LIS
Sbjct: 67  LTQGRIVHG-HLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVFDKMPERDFVTWTTLIS 125

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKL 172
           G++Q+ RP +AL LF +M      PN   L S++ A A       G+ ++ +  K     
Sbjct: 126 GYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDS 185

Query: 173 DSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMK 232
           +  + +AL+D+Y + G +D A  VF +   ++  ++ + I G A    + +A ELF+ M 
Sbjct: 186 NVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRCGTEKALELFQGML 245

Query: 233 SKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLL 292
            +G  P   SY ++  ACS  G++E+G  + H+     G K        ++D+  ++G +
Sbjct: 246 REGFRPSHFSYASLFGACSSTGFLEQG-KWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSI 304

Query: 293 EEAENFIASMPMKPDNVIWGTLLGACRVH 321
            +A      +  K D V W +LL A   H
Sbjct: 305 HDARKIFDRL-AKRDVVSWNSLLTAYAQH 332



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 81/182 (44%), Gaps = 18/182 (9%)

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           +LL  C     L  G  V+ ++ +   + D ++   L++MYAKCGS++ A +VF    ++
Sbjct: 56  TLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVFDKMPER 115

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA--------CSHLGW 255
           D   +T+ I G + +    +A  LF  M   G SP+  +  +V+ A        C H   
Sbjct: 116 DFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAERRGCCGH--- 172

Query: 256 VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
                   H      G    +   + ++DL  R GL+++A+    ++  + D V W  L+
Sbjct: 173 ------QLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRND-VSWNALI 225

Query: 316 GA 317
             
Sbjct: 226 AG 227


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like
            [Vitis vinifera]
          Length = 1005

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 200/550 (36%), Positives = 317/550 (57%), Gaps = 40/550 (7%)

Query: 2    VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
             VK     D+    +L+  Y+ CG    A   F+     D+V+WNS+INGY + G+    
Sbjct: 456  TVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNA 515

Query: 62   LKLFDKM------PQR-------------NDVSWNSILGGLV------------------ 84
            + +F K+      P               ND+   + + GL+                  
Sbjct: 516  IDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDM 575

Query: 85   --RFGSVDDACRVFNQMP-KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + GS+  A  +FN+    +  V+W V+I+ + QNG  KEA++ F +M+  +  PNS  
Sbjct: 576  YAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVT 635

Query: 142  LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
             VS+L A A L A   G   ++ I +     ++++  +LIDMYAKCG +D + ++F+   
Sbjct: 636  FVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMD 695

Query: 202  DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
             KD  ++ + + G A++GH   A  LF  M+   +  DS+S+++VLSAC H G VE+G  
Sbjct: 696  HKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRK 755

Query: 262  YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
             FHSM D + IKP+L+HYACMVDLLGRAGL +E   FI  MP++PD  +WG LLG+CR+H
Sbjct: 756  IFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMH 815

Query: 322  RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
             N ++G+   + L++ +  +   +++LS+IY ++ +  +A + R  M    +K+ PGCS 
Sbjct: 816  SNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSW 875

Query: 382  IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIG 441
            +EL   VH F  GD+SH + + ++  W  +++K++  GY  +   V+ ++EEE+KE  + 
Sbjct: 876  VELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLY 935

Query: 442  YHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
             HSE+LA+ F L+ T PGS I+IVKN+R+C+DCH+  K +SK+  R+I +RD   +HHFE
Sbjct: 936  SHSERLAITFALLNTPPGSTIQIVKNLRVCADCHTTTKFISKITTRRIIVRDATRFHHFE 995

Query: 502  DGSCSCLEYW 511
            DG CSC +YW
Sbjct: 996  DGICSCNDYW 1005



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 159/344 (46%), Gaps = 40/344 (11%)

Query: 13  VKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP--- 69
           V N LI  YS CG V  AR VFD+  D D VSW +M+ GY  NG  +E L+LFDKM    
Sbjct: 265 VSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGN 324

Query: 70  ---------------------------------QRND---VSWNSILGGLVRFGSVDDAC 93
                                            QR D   +    ++    + G  + A 
Sbjct: 325 VRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAK 384

Query: 94  RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153
           ++F  +  R LV+W  +I+   Q G P+EAL+LF+EMQ+  ++PN   L+S+L ACA L 
Sbjct: 385 QLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLS 444

Query: 154 ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIF 213
            L  G  ++ +  K  +  D     AL+ MYAKCG    A+  F+    +D+  + S I 
Sbjct: 445 LLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLIN 504

Query: 214 GLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIK 273
           G A  G    A ++F  ++   I+PD+ + + V+ AC+ L  +++G    H +    G +
Sbjct: 505 GYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQG-TCIHGLIVKLGFE 563

Query: 274 PELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
            +      ++D+  + G L  AE          D V W  ++ A
Sbjct: 564 SDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAA 607



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 158/343 (46%), Gaps = 39/343 (11%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DVF+   L+  YS  G ++ AR VFD+    DVV+WN+MI G  ++ +  E +  F  M 
Sbjct: 163 DVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQ 222

Query: 70  ----QRNDVSWNSILGGLVRF---------------------------------GSVDDA 92
               + + VS  ++  G+ +                                  G VD A
Sbjct: 223 LVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNGLIDLYSKCGDVDVA 282

Query: 93  CRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQL 152
            RVF+QM  +  VSW  +++G+A NG   E L LF +M+  ++  N    VS   A A+ 
Sbjct: 283 RRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAET 342

Query: 153 GALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAI 212
             L+ G  ++    ++ I  D ++   L+ MYAKCG  + A Q+F     +D+ A+++ I
Sbjct: 343 IDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAII 402

Query: 213 FGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGI 272
             L   G+  EA  LF+ M+++ + P+ ++ +++L AC+ L  ++ G    H       +
Sbjct: 403 AALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLG-KSIHCFTVKADM 461

Query: 273 KPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
             +L     +V +  + G    A      M  + D V W +L+
Sbjct: 462 DSDLSTGTALVSMYAKCGFFTAALTTFNRMSSR-DIVTWNSLI 503



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 100/398 (25%), Positives = 176/398 (44%), Gaps = 74/398 (18%)

Query: 17  LIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLF----DKMPQRN 72
           LI  YS+  +   AR VFD + +   + WNSMI  Y R+ +  E L+++    +K  + +
Sbjct: 69  LINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPD 128

Query: 73  DVSWNSIL-------------------------------GGLV----RFGSVDDACRVFN 97
             ++  +L                                GLV    + G +  A  VF+
Sbjct: 129 KYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFD 188

Query: 98  QMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDY 157
           +MPKR +V+W  +I+G +Q+  P EA+  FR MQ + +EP+S  L++L     +L  ++ 
Sbjct: 189 KMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIEL 248

Query: 158 GNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAM 217
              ++ Y+ ++     S +   LID+Y+KCG +D+A +VF    D+D  ++ + + G A 
Sbjct: 249 CRSIHGYVFRR--DFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAH 306

Query: 218 NGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMF------DVHG 271
           NG  +E  ELF+ MK   +  + +S ++   A +    +EKG              D+  
Sbjct: 307 NGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILV 366

Query: 272 IKPELDHYA------------------------CMVDLLGRAGLLEEAENFIASM---PM 304
             P +  YA                         ++  L + G  EEA +    M    M
Sbjct: 367 ATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKM 426

Query: 305 KPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD 342
           KP+ V   ++L AC      ++G+ I    +++D + D
Sbjct: 427 KPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSD 464



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 109/232 (46%), Gaps = 41/232 (17%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESD-DLDVVSWNSMINGYVRNGEIL 59
           ++VK  F  D  VKN+LI  Y+ CG +  A ++F+++D   D V+WN +I  Y++NG   
Sbjct: 556 LIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAK 615

Query: 60  EGLKLFDKM------PQ---------------------------------RNDVSWNSIL 80
           E +  F +M      P                                   N +  NS++
Sbjct: 616 EAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLI 675

Query: 81  GGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
               + G +D + ++FN+M  +  VSW  ++SG+A +G    A+ALF  MQ   ++ +S 
Sbjct: 676 DMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSV 735

Query: 141 ILVSLLSACAQLGALDYGNWVY-SYIQKKCIKLDSILCAALIDMYAKCGSID 191
             VS+LSAC   G ++ G  ++ S   K  IK D    A ++D+  + G  D
Sbjct: 736 SFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFD 787


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/548 (37%), Positives = 318/548 (58%), Gaps = 40/548 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VVK  +   VF+ NSLI  Y  C +   +R VFDE  D + VSW+++I   +++    EG
Sbjct: 36  VVKFGYQSQVFISNSLITMYGKCDKYELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEG 95

Query: 62  LKLFDKM------PQRN-----------------------------DVSWNSILGGL-VR 85
             LF +M      P R                              D S  S   G+  R
Sbjct: 96  FSLFRQMLSEGSRPSRGAILNAMACVRSHEEADDVYRVVVENGLDFDQSVQSAAAGMFAR 155

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
            G V+ A ++F+ +  + LV+W   I  + +   P EAL L ++M    + P++  L+ +
Sbjct: 156 CGRVEVARKLFDGIMSKDLVTWATTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGV 215

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILC--AALIDMYAKCGSIDLAMQVFHSYGDK 203
           + AC+ L +    + V+  I       + +L    ALID+Y KCGS+  A +VF    ++
Sbjct: 216 IRACSTLASFQLAHIVHGIITTGFF-YNQLLAVETALIDLYVKCGSLTYARKVFDGMQER 274

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           ++  +++ I G  M+G   EA  LF+ MK+  + PD I+++++LSACSH G V +G+  F
Sbjct: 275 NIITWSAMISGYGMHGWGREALNLFDQMKAS-VKPDHITFVSILSACSHSGLVAEGWECF 333

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
           +SM    G+ P  +HYACMVD+LGRAG L+EA +FI  MP++P+  +WG LLGACR+H N
Sbjct: 334 NSMARDFGVTPRPEHYACMVDILGRAGKLDEACDFIERMPVRPNAAVWGALLGACRIHLN 393

Query: 324 AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE 383
            ++ + +   L + D ++ GRY++L NIY  T K + A+ +R  M+ R +K+  G S+IE
Sbjct: 394 VDLAEMVARALFDLDPHNAGRYVILYNIYTLTGKRKEADSIRTLMKNRGVKKIAGYSVIE 453

Query: 384 LDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYH 443
           +   ++ F+AGDRSH +T  IY   E ++ +I+  GY  +   V+ D++EE KE+++  H
Sbjct: 454 IKNKLYAFVAGDRSHPQTDLIYSELERLMDRIRQEGYTPDINFVLHDVDEETKESMLYLH 513

Query: 444 SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
           SEKLA+ FGL+   PGSVIRI KN+R+C DCH+A K +SKV  R+I +RD   +HHF++G
Sbjct: 514 SEKLAIVFGLLNLGPGSVIRIRKNLRVCGDCHTATKFISKVTGREIVVRDAHRFHHFKNG 573

Query: 504 SCSCLEYW 511
           +CSC +YW
Sbjct: 574 ACSCRDYW 581



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 113/255 (44%), Gaps = 42/255 (16%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +VV+N   +D  V+++    ++ CGRV  AR +FD     D+V+W + I  YV+    LE
Sbjct: 133 VVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTWATTIEAYVKADMPLE 192

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRF---------------------------------- 86
            L L  +M  +        L G++R                                   
Sbjct: 193 ALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHGIITTGFFYNQLLAVETALI 252

Query: 87  ------GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
                 GS+  A +VF+ M +R++++W  +ISG+  +G  +EAL LF +M++  ++P+  
Sbjct: 253 DLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHGWGREALNLFDQMKA-SVKPDHI 311

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKC-IKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
             VS+LSAC+  G +  G   ++ + +   +       A ++D+  + G +D A      
Sbjct: 312 TFVSILSACSHSGLVAEGWECFNSMARDFGVTPRPEHYACMVDILGRAGKLDEACDFIER 371

Query: 200 YGDKDVSAYTSAIFG 214
              +  +A   A+ G
Sbjct: 372 MPVRPNAAVWGALLG 386



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 85/188 (45%), Gaps = 5/188 (2%)

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
           M  L ++P++     ++ AC+ L   ++G  ++  + K   +    +  +LI MY KC  
Sbjct: 1   MLRLGIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDK 60

Query: 190 IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
            +L+ QVF    DK+  ++++ I     +    E F LF  M S+G  P   S  A+L+A
Sbjct: 61  YELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRP---SRGAILNA 117

Query: 250 CSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNV 309
            + +   E+    +  + + +G+  +    +    +  R G +E A      + M  D V
Sbjct: 118 MACVRSHEEADDVYRVVVE-NGLDFDQSVQSAAAGMFARCGRVEVARKLFDGI-MSKDLV 175

Query: 310 IWGTLLGA 317
            W T + A
Sbjct: 176 TWATTIEA 183


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/540 (38%), Positives = 319/540 (59%), Gaps = 40/540 (7%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ 70
           V V  +++  Y  CG +R AR VFD     + VSWN+MI+GY +NG+  E L LF++M +
Sbjct: 196 VNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVE 255

Query: 71  RN-DVSWNSILGGL-------------------VRFG-------------------SVDD 91
              DV+  S+L  L                   VR G                    VD 
Sbjct: 256 EGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDL 315

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           A  VF+++ +R+ VSW  +I G AQNG  ++A+ LF  MQ  +++P+S  LVS++ A A 
Sbjct: 316 ASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALAD 375

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSA 211
           +       W++ Y  +  +  D  +  ALIDMYAKCG +++A  +F+S  ++ V  + + 
Sbjct: 376 ISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAM 435

Query: 212 IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG 271
           I G   +G    A ELFE MKS GI P+  ++++VLSACSH G V++G  YF SM + +G
Sbjct: 436 IHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYG 495

Query: 272 IKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIG 331
           ++P ++HY  MVDLLGRAG L+EA  FI  MPM P   ++G +LGAC++H+N E+ +   
Sbjct: 496 LEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESA 555

Query: 332 NMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEF 391
             + E        ++LL+NIY      ++   VR  M K  +++ PG S+I+L   +H F
Sbjct: 556 QKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTF 615

Query: 392 LAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAF 451
            +G  +H++ +EIY    +++++IK  GY  +T S+  D+E++ K  ++  HSEKLA+AF
Sbjct: 616 YSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTDSI-HDVEDDVKAQLLNTHSEKLAIAF 674

Query: 452 GLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           GLI T PG+ I+I KN+R+C+DCH+A KL+S V  R+I +RD + +HHF+DG CSC +YW
Sbjct: 675 GLIRTAPGTTIQIKKNLRVCNDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 734



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 141/317 (44%), Gaps = 46/317 (14%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           +     +L   Y+ C R  DAR VFD     D V+WN+++ GY RNG     +++  +M 
Sbjct: 93  EALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQ 152

Query: 70  QRNDVSWNS----------------------------------------ILGGLVRFGSV 89
           +      +S                                        IL    + G +
Sbjct: 153 EEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDI 212

Query: 90  DDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
             A  VF+ MP ++ VSW  +I G+AQNG  +EALALF  M    ++     +++ L AC
Sbjct: 213 RAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQAC 272

Query: 150 AQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYT 209
            +LG LD G  V+  + +  +  +  +  ALI MY+KC  +DLA  VF     +   ++ 
Sbjct: 273 GELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWN 332

Query: 210 SAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG------WVEKGFYYF 263
           + I G A NG S +A  LF  M+ + + PDS + ++V+ A + +       W+       
Sbjct: 333 AMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRL 392

Query: 264 HSMFDVHGIKPELDHYA 280
           H   DV+ +   +D YA
Sbjct: 393 HLDQDVYVLTALIDMYA 409



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 63/126 (50%), Gaps = 1/126 (0%)

Query: 123 ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182
           ALA F  M S    P      SLL  CA  G L  G  V++ +  + I  +++   AL +
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 183 MYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMK-SKGISPDSI 241
           MYAKC     A +VF     +D  A+ + + G A NG +  A E+   M+  +G  PDSI
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSI 162

Query: 242 SYIAVL 247
           + ++VL
Sbjct: 163 TLVSVL 168


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 200/552 (36%), Positives = 322/552 (58%), Gaps = 43/552 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           VK+  + ++FV N+LI  Y   G + +A WVF      D+V+WNS+I+   + G++   +
Sbjct: 195 VKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAV 254

Query: 63  KLFDKMPQR----------------------------------------NDVSWNSILGG 82
           +LF  M +                                         + ++ N+++  
Sbjct: 255 ELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDM 314

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD-LEPNSAI 141
             +   +D A +VF+ +P R +VSW  LI+G+ QNG   EA+ ++ +M + + L+P    
Sbjct: 315 YAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGT 374

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
            VS+L A + LG L  G  +++   K  + LD  +   LID+YAKCG +  AM +F    
Sbjct: 375 FVSVLPAYSYLGGLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMP 434

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
            +    + + I GL ++GH  +A  LF  M+ + I PD ++++++L+ACSH G V++G  
Sbjct: 435 RRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRS 494

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           +F  M  V+GI P   HY CMVD+LGRAG L+EA  FI SMP+KPD+ +WG LLGACR+H
Sbjct: 495 FFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALLGACRIH 554

Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
            N EMG+     L E D  + G Y+L+SN+Y +  K +  + VR  +R++ +++ PG S 
Sbjct: 555 GNVEMGKVASQNLFELDPENVGYYVLMSNMYAKIGKWDGVDAVRSLVRRQNLQKTPGWSS 614

Query: 382 IELDGVVHEFLAGDRS--HEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETV 439
           +E+ G V  F +G ++  H + +EI +   +++ K+K+ GY  +   V+ D+EE+EKE +
Sbjct: 615 MEVKGSVSVFYSGTQTEPHPQHEEIQRGLHDLLAKMKSAGYVPDYSFVLQDVEEDEKEQI 674

Query: 440 IGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHH 499
           +  HSE+LA+AFG+I T PG+ + I KN+R+C DCHSA K +SK+ +R+I +RD   +HH
Sbjct: 675 LNNHSERLAIAFGIINTPPGTPLHIYKNLRVCGDCHSATKYISKITEREIIVRDANRFHH 734

Query: 500 FEDGSCSCLEYW 511
           F+DG CSC ++W
Sbjct: 735 FKDGHCSCGDFW 746



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/353 (28%), Positives = 166/353 (47%), Gaps = 43/353 (12%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           +VF   SL+  Y   GRV +A  VFDE  + DV +WN+M++G  RN    + + L  +M 
Sbjct: 101 NVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMV 160

Query: 70  QR----NDVSWNSILGGLV-----------------------------------RFGSVD 90
                 + V+ +S+L   V                                   + G + 
Sbjct: 161 GEGVAGDAVTLSSVLPMCVVLGDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLT 220

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           +A  VF  M  R LV+W  +IS   Q G+   A+ LF  M    + P+   LVSL SA A
Sbjct: 221 EAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVA 280

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCA-ALIDMYAKCGSIDLAMQVFHSYGDKDVSAYT 209
           Q G       V+ Y++++   +  I+   A++DMYAK   ID A +VF +  D+DV ++ 
Sbjct: 281 QCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWN 340

Query: 210 SAIFGLAMNGHSIEAFELFENMKS-KGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD 268
           + I G   NG + EA  ++ +M + +G+ P   ++++VL A S+LG +++G    H++  
Sbjct: 341 TLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGM-RMHALSI 399

Query: 269 VHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
             G+  ++    C++DL  + G L EA      MP +     W  ++    VH
Sbjct: 400 KTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGP-WNAIIAGLGVH 451



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 126/273 (46%), Gaps = 7/273 (2%)

Query: 72  NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQ 131
           N  +  S++   +RFG V +A RVF++MP+R + +W  ++SG  +N R  +A+ L   M 
Sbjct: 101 NVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMV 160

Query: 132 SLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSID 191
              +  ++  L S+L  C  LG       ++ Y  K  +  +  +C ALID+Y K G + 
Sbjct: 161 GEGVAGDAVTLSSVLPMCVVLGDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLT 220

Query: 192 LAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS 251
            A  VF     +D+  + S I      G    A ELF  M   G+ PD ++ +++ SA +
Sbjct: 221 EAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVA 280

Query: 252 HLGWVEKGFYYFHSMFDVHGIK-PELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVI 310
             G  E G    H      G    ++     MVD+  +   ++ A+    ++P + D V 
Sbjct: 281 QCG-DELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDR-DVVS 338

Query: 311 WGTLLGACRVHRNAEMGQRIGNMLIESDQNHDG 343
           W TL+     +  A    RI N +     NH+G
Sbjct: 339 WNTLITGYMQNGLANEAIRIYNDM----HNHEG 367


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/524 (36%), Positives = 318/524 (60%), Gaps = 39/524 (7%)

Query: 27  VRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP----QRNDVSWNSIL-- 80
           +   R VF+     DVVS+N++I GY ++G   + L++  +M     + +  + +S+L  
Sbjct: 192 IDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPI 251

Query: 81  --------------GGLVRFG-------------------SVDDACRVFNQMPKRSLVSW 107
                         G ++R G                    ++D+ RVF+++  R  +SW
Sbjct: 252 FSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISW 311

Query: 108 VVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK 167
             L++G+ QNGR  EAL LFR+M +  ++P +    S++ ACA L  L  G  ++ Y+ +
Sbjct: 312 NSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLR 371

Query: 168 KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFEL 227
                +  + +AL+DMY+KCG+I  A ++F      D  ++T+ I G A++GH  EA  L
Sbjct: 372 GGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSL 431

Query: 228 FENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLG 287
           FE MK +G+ P+ ++++AVL+ACSH+G V++ + YF+SM  V+G+  EL+HYA + DLLG
Sbjct: 432 FEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLG 491

Query: 288 RAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYIL 347
           RAG LEEA NFI+ M ++P   +W TLL +C VH+N E+ +++   +   D  + G Y+L
Sbjct: 492 RAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVL 551

Query: 348 LSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQF 407
           + N+Y    + +   ++R  MRK+ +++ P CS IE+    H F++GDRSH    +I +F
Sbjct: 552 MCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEF 611

Query: 408 WEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKN 467
            + ++++++  GY  +T  V+ D++EE K  ++  HSE+LA+AFG+I T+PG+ IR+ KN
Sbjct: 612 LKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKN 671

Query: 468 IRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           IRIC+DCH A+K +SK+ +R+I +RD   +HHF  G+CSC +YW
Sbjct: 672 IRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 150/289 (51%), Gaps = 9/289 (3%)

Query: 39  DLDVVSWNSMINGYVR---NGEILEGLKLFDKMPQRNDVSWNSILGG---LVRFGSVDDA 92
           D D+ + N+++N Y +    G  +    +FD+MPQR   S +  +     ++ FG +D  
Sbjct: 137 DCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFG-IDSV 195

Query: 93  CRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQL 152
            RVF  MP++ +VS+  +I+G+AQ+G  ++AL + REM + DL+P+S  L S+L   ++ 
Sbjct: 196 RRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEY 255

Query: 153 GALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAI 212
             +  G  ++ Y+ +K I  D  + ++L+DMYAK   I+ + +VF     +D  ++ S +
Sbjct: 256 VDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLV 315

Query: 213 FGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGI 272
            G   NG   EA  LF  M +  + P ++++ +V+ AC+HL  +  G    H      G 
Sbjct: 316 AGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLG-KQLHGYVLRGGF 374

Query: 273 KPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
              +   + +VD+  + G ++ A      M +  D V W  ++    +H
Sbjct: 375 GSNIFIASALVDMYSKCGNIKAARKIFDRMNV-LDEVSWTAIIMGHALH 422



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 137/292 (46%), Gaps = 47/292 (16%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V++     DV++ +SL+  Y+   R+ D+  VF      D +SWNS++ GYV+NG   E 
Sbjct: 268 VIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEA 327

Query: 62  LKLFDKM----PQRNDVSWNSIL---------------------GGL------------- 83
           L+LF +M     +   V+++S++                     GG              
Sbjct: 328 LRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDM 387

Query: 84  -VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G++  A ++F++M     VSW  +I G A +G   EA++LF EM+   ++PN    
Sbjct: 388 YSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAF 447

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSIL--CAALIDMYAKCGSIDLAMQVFHSY 200
           V++L+AC+ +G +D   W Y     K   L+  L   AA+ D+  + G ++ A    +++
Sbjct: 448 VAVLTACSHVGLVDEA-WGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEA----YNF 502

Query: 201 GDKDVSAYTSAIFGLAMNGHSI-EAFELFENMKSKGISPDSISYIAVLSACS 251
             K     T +++   ++  S+ +  EL E +  K  + DS +  A +  C+
Sbjct: 503 ISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCN 554



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 100/199 (50%), Gaps = 19/199 (9%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V++  F  ++F+ ++L+  YS CG ++ AR +FD  + LD VSW ++I G+  +G   E 
Sbjct: 369 VLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEA 428

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPK-----RSLVSWVVLIS 112
           + LF++M ++    N V++ ++L      G VD+A   FN M K     + L  +  +  
Sbjct: 429 VSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVAD 488

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKL 172
              + G+ +EA     +M    +EP  ++  +LLS+C+    L+    V     +K   +
Sbjct: 489 LLGRAGKLEEAYNFISKMC---VEPTGSVWSTLLSSCSVHKNLELAEKV----AEKIFTV 541

Query: 173 DSILCAALI---DMYAKCG 188
           DS    A +   +MYA  G
Sbjct: 542 DSENMGAYVLMCNMYASNG 560



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 106/258 (41%), Gaps = 38/258 (14%)

Query: 96  FNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGAL 155
           F  +    +++W  +I  F       +ALA F EM++    P+  +  S+L +C  +  L
Sbjct: 62  FKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDL 121

Query: 156 DYGNWVYSYIQKKCIKLDSILCAALIDMYAKC---GS----------------------- 189
            +G  V+ +I +  +  D     AL++MYAK    GS                       
Sbjct: 122 RFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDV 181

Query: 190 ----------IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
                     ID   +VF     KDV +Y + I G A +G   +A  +   M +  + PD
Sbjct: 182 KAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPD 241

Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI 299
           S +  +VL   S    V KG    H      GI  ++   + +VD+  ++  +E++E   
Sbjct: 242 SFTLSSVLPIFSEYVDVIKG-KEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVF 300

Query: 300 ASMPMKPDNVIWGTLLGA 317
           + +  + D + W +L+  
Sbjct: 301 SRLYCR-DGISWNSLVAG 317


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/540 (38%), Positives = 319/540 (59%), Gaps = 40/540 (7%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ 70
           V V  +++  Y  CG +R AR VFD     + VSWN+MI+GY +NG+  E L LF++M +
Sbjct: 196 VNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVE 255

Query: 71  RN-DVSWNSILGGL-------------------VRFG-------------------SVDD 91
              DV+  S+L  L                   VR G                    VD 
Sbjct: 256 EGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDL 315

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           A  VF+++ +R+ VSW  +I G AQNG  ++A+ LF  MQ  +++P+S  LVS++ A A 
Sbjct: 316 ASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALAD 375

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSA 211
           +       W++ Y  +  +  D  +  ALIDMYAKCG +++A  +F+S  ++ V  + + 
Sbjct: 376 ISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAM 435

Query: 212 IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG 271
           I G   +G    A ELFE MKS GI P+  ++++VLSACSH G V++G  YF SM + +G
Sbjct: 436 IHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYG 495

Query: 272 IKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIG 331
           ++P ++HY  MVDLLGRAG L+EA  FI  MPM P   ++G +LGAC++H+N E+ +   
Sbjct: 496 LEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESA 555

Query: 332 NMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEF 391
             + E        ++LL+NIY      ++   VR  M K  +++ PG S+I+L   +H F
Sbjct: 556 QKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTF 615

Query: 392 LAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAF 451
            +G  +H++ +EIY    +++++IK  GY  +T S+  D+E++ K  ++  HSEKLA+AF
Sbjct: 616 YSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTDSI-HDVEDDVKAQLLNTHSEKLAIAF 674

Query: 452 GLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           GLI T PG+ I+I KN+R+C+DCH+A KL+S V  R+I +RD + +HHF+DG CSC +YW
Sbjct: 675 GLIRTAPGTTIQIKKNLRVCNDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 734



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 141/317 (44%), Gaps = 46/317 (14%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           +     +L   Y+ C R  DAR VFD     D V+WN+++ GY RNG     +++  +M 
Sbjct: 93  EALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQ 152

Query: 70  QRNDVSWNS----------------------------------------ILGGLVRFGSV 89
           +      +S                                        IL    + G +
Sbjct: 153 EEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDI 212

Query: 90  DDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
             A  VF+ MP ++ VSW  +I G+AQNG  +EALALF  M    ++     +++ L AC
Sbjct: 213 RAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQAC 272

Query: 150 AQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYT 209
            +LG LD G  V+  + +  +  +  +  ALI MY+KC  +DLA  VF     +   ++ 
Sbjct: 273 GELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWN 332

Query: 210 SAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG------WVEKGFYYF 263
           + I G A NG S +A  LF  M+ + + PDS + ++V+ A + +       W+       
Sbjct: 333 AMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRL 392

Query: 264 HSMFDVHGIKPELDHYA 280
           H   DV+ +   +D YA
Sbjct: 393 HLDQDVYVLTALIDMYA 409



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 63/126 (50%), Gaps = 1/126 (0%)

Query: 123 ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182
           ALA F  M S    P      SLL  CA  G L  G  V++ +  + I  +++   AL +
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 183 MYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMK-SKGISPDSI 241
           MYAKC     A +VF     +D  A+ + + G A NG +  A E+   M+  +G  PDSI
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSI 162

Query: 242 SYIAVL 247
           + ++VL
Sbjct: 163 TLVSVL 168


>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
          Length = 603

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 203/526 (38%), Positives = 311/526 (59%), Gaps = 48/526 (9%)

Query: 30  ARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSV 89
           AR +F+   + D+V +NSM  GY R    LE   LF ++ +   +  N     L++  +V
Sbjct: 82  ARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAV 141

Query: 90  ---------------------------------------DDACRVFNQMPKRSLVSWVVL 110
                                                  D A  VF+++ +  +V +  +
Sbjct: 142 AKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARXVFDRIVEPCVVCYNAM 201

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK--- 167
           I+G+A+  RP EAL+LFREMQ   L+PN   L+S+LS+CA LG+LD G W++ Y +K   
Sbjct: 202 ITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSF 261

Query: 168 -KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFE 226
            K +K+++    ALIDM+AKCGS+D A+ +F     KD  A+++ I   A +G + ++  
Sbjct: 262 CKYVKVNT----ALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSML 317

Query: 227 LFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLL 286
           +FE M+S+ + PD I+++ +L+ACSH G VE+G  YF  M    GI P + HY  MVDLL
Sbjct: 318 MFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLL 377

Query: 287 GRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYI 346
             AG LE+A  FI  +P+ P  ++W  LL AC  H N ++ +++   + E D +H G Y+
Sbjct: 378 SXAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYV 437

Query: 347 LLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQ 406
           +LSN+Y    K E  + +RK M+ RK  + PGCS IE++ VVHEF +GD     T ++++
Sbjct: 438 ILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHR 497

Query: 407 FWEEIVKKIKNYGYNVETRSVMF-DIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIV 465
             +E+VK++K  GY  +T  V+  ++ ++EKE  + YHSEKLA+ FGL+ T PG+ IR+V
Sbjct: 498 ALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVV 557

Query: 466 KNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           KN+R+C DCH+A KL+S +F RK+  RD + +HHFEDG CSC ++W
Sbjct: 558 KNLRVCRDCHNAAKLISLIFGRKVVXRDVQRFHHFEDGKCSCGDFW 603



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 121/257 (47%), Gaps = 6/257 (2%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
            S+  A  +F  M +  +V +  +  G+++   P E  +LF E+    + P++    SLL
Sbjct: 77  SSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLL 136

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
            ACA   AL+ G  ++    K  +  +  +C  LI+MY +C  +D A  VF    +  V 
Sbjct: 137 KACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARXVFDRIVEPCVV 196

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
            Y + I G A      EA  LF  M+ K + P+ I+ ++VLS+C+ LG ++ G  + H  
Sbjct: 197 CYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLG-KWIHKY 255

Query: 267 FDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAE- 325
              H     +     ++D+  + G L++A +    M  K D   W  ++ A   H  AE 
Sbjct: 256 AKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYK-DTQAWSAMIVAYANHGKAEK 314

Query: 326 ---MGQRIGNMLIESDQ 339
              M +R+ +  ++ D+
Sbjct: 315 SMLMFERMRSENVQPDE 331



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 127/304 (41%), Gaps = 75/304 (24%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           +V+V  +LI  Y+ C  V  AR VFD   +  VV +N+MI GY R     E L LF +M 
Sbjct: 163 NVYVCPTLINMYTECEDVDSARXVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQ 222

Query: 70  QR----NDVSWNSILGG-----------------------------------LVRFGSVD 90
            +    N+++  S+L                                       + GS+D
Sbjct: 223 GKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLD 282

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           DA  +F +M  +   +W  +I  +A +G+ ++++ +F  M+S +++P+    + LL+AC+
Sbjct: 283 DAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACS 342

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
             G ++ G   +S                   M +K G +              +  Y S
Sbjct: 343 HTGRVEEGRKYFS------------------QMVSKFGIV------------PSIKHYGS 372

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS---HLGWVEKGFYYFHSMF 267
            +  L+  G+  +A+E  + +    ISP  + +  +L+ACS   +L   EK       + 
Sbjct: 373 MVDLLSXAGNLEDAYEFIDKLP---ISPTPMLWRILLAACSSHNNLDLAEKVSERIFELD 429

Query: 268 DVHG 271
           D HG
Sbjct: 430 DSHG 433



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 82/171 (47%), Gaps = 12/171 (7%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           K+SF   V V  +LI  ++ CG + DA  +F++    D  +W++MI  Y  +G+  + + 
Sbjct: 258 KHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSML 317

Query: 64  LFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLISGF 114
           +F++M     Q +++++  +L      G V++  + F+QM  +     S+  +  ++   
Sbjct: 318 MFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLL 377

Query: 115 AQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           +  G  ++A   +  +  L + P   +   LL+AC+    LD    V   I
Sbjct: 378 SXAGNLEDA---YEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERI 425


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/538 (37%), Positives = 306/538 (56%), Gaps = 42/538 (7%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRND- 73
           N LI  Y+  G +++A+ +FD+  + D  SW +MI+GYVR+    E L+LF +M +R+D 
Sbjct: 140 NILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEALELF-RMMKRSDN 198

Query: 74  ----------------------------------------VSWNSILGGLVRFGSVDDAC 93
                                                   V W+++     + GS+++A 
Sbjct: 199 SKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEAR 258

Query: 94  RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153
            +F++M  R +V+W  +I  + Q+GR KE   LF ++    + PN      +L+ACA   
Sbjct: 259 HIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQT 318

Query: 154 ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIF 213
           + + G  V+ Y+ +      S   +AL+ MY+KCG++  A +VF      D+ ++TS I 
Sbjct: 319 SEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIA 378

Query: 214 GLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIK 273
           G A NG   EA   FE +   G  PD I+++ VLSAC+H G V+KG  YFHS+ + +G+ 
Sbjct: 379 GYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLT 438

Query: 274 PELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNM 333
              DHYAC++DLL R+G  +EAEN I+ M MKPD  +W +LLG CR+H N ++ QR    
Sbjct: 439 HTADHYACIIDLLARSGQFDEAENIISKMSMKPDKFLWASLLGGCRIHGNLKLAQRAAEA 498

Query: 334 LIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLA 393
           L E +  +   Y+ L+NIY          ++RKTM  R + + PG S I +   VH FL 
Sbjct: 499 LFEIEPENPATYVTLANIYATAGMWSEVAKIRKTMDDRGVVKKPGLSWIAIKRDVHVFLV 558

Query: 394 GDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGL 453
           GD SH K++EI +F  ++ K++K  G+  +T  V+ D+E+E+KE  + YHSEKLA+AFG+
Sbjct: 559 GDDSHPKSKEINEFLGKLSKRMKEEGFVPDTNFVLHDVEDEQKEQNLSYHSEKLAVAFGI 618

Query: 454 ICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           I T  G+ I++ KN+R C DCH+A+K +SK+  RKI +RD   +H FEDG CSC +YW
Sbjct: 619 ISTPEGTPIKVFKNLRTCVDCHTAIKFISKITNRKIIVRDSNRFHFFEDGHCSCRDYW 676



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 90/298 (30%), Positives = 153/298 (51%), Gaps = 3/298 (1%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N ++  Y +   +++  KLFD+MP+R+  SWN ++ G  + G + +A  +F++MP+R   
Sbjct: 109 NRLLEMYAKCDSLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNF 168

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLD-LEPNSAILVSLLSACAQLGALDYGNWVYSY 164
           SW  +ISG+ ++ RP EAL LFR M+  D  + N   + S L+A A +  L  G  ++ Y
Sbjct: 169 SWTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGY 228

Query: 165 IQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEA 224
           I +  +  D ++ +AL DMY KCGSI+ A  +F    D+D+  +T+ I     +G   E 
Sbjct: 229 IMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEG 288

Query: 225 FELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVD 284
           F+LF ++   GI P+  ++  VL+AC++    E G    H      G  P     + +V 
Sbjct: 289 FDLFADLLRSGIRPNEFTFSGVLNACANQTSEELG-KKVHGYMTRVGFDPFSFAASALVH 347

Query: 285 LLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD 342
           +  + G +  AE      P +PD   W +L+     +   +   R   +L++S    D
Sbjct: 348 MYSKCGNMVSAERVFKETP-QPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPD 404



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 68/134 (50%), Gaps = 8/134 (5%)

Query: 116 QNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI 175
           Q  R KEAL +  ++     +P++++  +L+ +C +   L  G  V+ +I+         
Sbjct: 51  QQNRLKEALQILHQID----KPSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLF 106

Query: 176 LCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG 235
           +   L++MYAKC S+  + ++F    ++D+ ++   I G A  G   EA  LF+ M  + 
Sbjct: 107 ILNRLLEMYAKCDSLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPER- 165

Query: 236 ISPDSISYIAVLSA 249
              D+ S+ A++S 
Sbjct: 166 ---DNFSWTAMISG 176


>gi|15232821|ref|NP_190337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206890|sp|Q9SN85.1|PP267_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g47530
 gi|6522536|emb|CAB61979.1| putative protein [Arabidopsis thaliana]
 gi|62320272|dbj|BAD94558.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644772|gb|AEE78293.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 591

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/468 (43%), Positives = 296/468 (63%), Gaps = 9/468 (1%)

Query: 53  VRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSV----DDACRVFNQMPKRSLVSWV 108
           +++G++L GL++  K+     +S + ++  L+   S      DAC+VF+++PKR  VSW 
Sbjct: 124 IKSGDLLGGLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWN 183

Query: 109 VLISGFAQNGRPKEALALFREMQS-LD--LEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           VL S + +N R ++ L LF +M++ +D  ++P+    +  L ACA LGALD+G  V+ +I
Sbjct: 184 VLFSCYLRNKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFI 243

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
            +  +     L   L+ MY++CGS+D A QVF+   +++V ++T+ I GLAMNG   EA 
Sbjct: 244 DENGLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAI 303

Query: 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH-GIKPELDHYACMVD 284
           E F  M   GISP+  +   +LSACSH G V +G  +F  M      IKP L HY C+VD
Sbjct: 304 EAFNEMLKFGISPEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVVD 363

Query: 285 LLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGR 344
           LLGRA LL++A + I SM MKPD+ IW TLLGACRVH + E+G+R+ + LIE      G 
Sbjct: 364 LLGRARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGDVELGERVISHLIELKAEEAGD 423

Query: 345 YILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEI 404
           Y+LL N Y    K E   E+R  M++++I   PGCS IEL G VHEF+  D SH + +EI
Sbjct: 424 YVLLLNTYSTVGKWEKVTELRSLMKEKRIHTKPGCSAIELQGTVHEFIVDDVSHPRKEEI 483

Query: 405 YQFWEEIVKKIKNYGYNVETRSVMFDIE-EEEKETVIGYHSEKLALAFGLICTKPGSVIR 463
           Y+   EI +++K  GY  E  S + ++E EEEK   + YHSEKLA+AFG++ T PG+ IR
Sbjct: 484 YKMLAEINQQLKIAGYVAEITSELHNLESEEEKGYALRYHSEKLAIAFGILVTPPGTTIR 543

Query: 464 IVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           + KN+R C DCH+  K VS V+ R + +RDR  +HHF+ GSCSC ++W
Sbjct: 544 VTKNLRTCVDCHNFAKFVSDVYDRIVIVRDRSRFHHFKGGSCSCNDFW 591



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 120/304 (39%), Gaps = 82/304 (26%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +  + F  D  +  +L+  YS C    DA  VFDE    D VSWN + + Y+RN    + 
Sbjct: 139 IFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNVLFSCYLRNKRTRDV 198

Query: 62  LKLFDKMPQRNDVSW--------------------------------------------N 77
           L LFDKM  +NDV                                              N
Sbjct: 199 LVLFDKM--KNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDENGLSGALNLSN 256

Query: 78  SILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEP 137
           +++    R GS+D A +VF  M +R++VSW  LISG A NG  KEA+  F EM    + P
Sbjct: 257 TLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAIEAFNEMLKFGISP 316

Query: 138 NSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSIL--CAALIDMYAKCGSIDLAMQ 195
               L  LLSAC+  G +  G   +  ++    K+   L     ++D+  +   +D    
Sbjct: 317 EEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVVDLLGRARLLD---- 372

Query: 196 VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGW 255
                                      +A+ L ++M+ K   PDS  +  +L AC   G 
Sbjct: 373 ---------------------------KAYSLIKSMEMK---PDSTIWRTLLGACRVHGD 402

Query: 256 VEKG 259
           VE G
Sbjct: 403 VELG 406



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 106/236 (44%), Gaps = 12/236 (5%)

Query: 89  VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQ---SLDLEPNSAILVSL 145
           ++ +CRVF+Q    +L     +I  F+ +  P E   LFR ++   SL   P S+     
Sbjct: 62  INYSCRVFSQRLNPTLSHCNTMIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFA-- 119

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
           L  C + G L  G  ++  I       DS+L   L+D+Y+ C +   A +VF     +D 
Sbjct: 120 LKCCIKSGDLLGGLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDT 179

Query: 206 SAYTSAIFGLAMNGHSIEAFELFENMKSK---GISPDSISYIAVLSACSHLGWVEKGFYY 262
            ++         N  + +   LF+ MK+     + PD ++ +  L AC++LG ++ G   
Sbjct: 180 VSWNVLFSCYLRNKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFG-KQ 238

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVI-WGTLLGA 317
            H   D +G+   L+    +V +  R G +++A        M+  NV+ W  L+  
Sbjct: 239 VHDFIDENGLSGALNLSNTLVSMYSRCGSMDKAYQVFYG--MRERNVVSWTALISG 292


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/552 (36%), Positives = 326/552 (59%), Gaps = 45/552 (8%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRD---ARWVFDESDDLDVVSWNSMINGYVRNGEI 58
           V      +D+ V N L+    +C + +D   A  +F++ ++ D VSW+ MI G+V+NG+ 
Sbjct: 26  VTTTGIIHDLIVANKLLY---MCAKHKDLVTAHLLFNKMEERDPVSWSVMIGGFVKNGDY 82

Query: 59  LEGLKLFDKMPQRNDVSWN---------------SILGGLV------------------- 84
               + F ++ +      N                I+G L+                   
Sbjct: 83  ERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHSTVLKNGLHLDNFVCSTL 142

Query: 85  -----RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS 139
                + G +D+A ++F++MPK+ LV+  V+I+G+A+ G+P E+  LF +M+     P+ 
Sbjct: 143 VDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPNESWVLFDQMRRDGFVPDK 202

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
             +V++++ACA+LGA++    V+ Y+  +   LD  L  A+IDMYAKCGSID + ++F  
Sbjct: 203 VAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELGTAMIDMYAKCGSIDSSREIFDR 262

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
              K+V ++++ I     +G   EA ELF  M + GI P+ I++I++L ACSH G V+ G
Sbjct: 263 MEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIPNRITFISLLYACSHAGLVDDG 322

Query: 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACR 319
              F  M   +G++P++ HY CMVDLLGRAG L++A   I +M ++ D  IW   LGACR
Sbjct: 323 LQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRLIENMEVEKDEGIWCAFLGACR 382

Query: 320 VHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGC 379
           +HR  ++ ++   +L+     + G YILLSNIY    + ++  ++R  M KR++K+ PG 
Sbjct: 383 IHRQVDLAEKAAKLLLSLQTQNPGHYILLSNIYANAGRWKDVAKIRNLMAKRRLKKIPGY 442

Query: 380 SLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETV 439
           + IE+D +++ F AGD SH ++ EIY+  + + +K+++ GY  +T SV+ D++EE K  +
Sbjct: 443 TWIEVDNIIYRFGAGDNSHLRSNEIYEMLKSLSQKLESAGYVPDTNSVLHDVDEEVKLGI 502

Query: 440 IGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHH 499
           +  HSEKLA+AFGLI T  G+ IRI KN+R+C DCHS  KLVS + +R I +RD   +HH
Sbjct: 503 LHAHSEKLAIAFGLIATPDGTPIRITKNLRVCGDCHSFCKLVSAITQRDIIVRDANRFHH 562

Query: 500 FEDGSCSCLEYW 511
           F++G CSC +YW
Sbjct: 563 FKEGICSCGDYW 574



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 5/147 (3%)

Query: 161 VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGH 220
           V++ +    I  D I+   L+ M AK   +  A  +F+   ++D  +++  I G   NG 
Sbjct: 22  VHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEERDPVSWSVMIGGFVKNGD 81

Query: 221 SIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA 280
               F+ F  +   G  PD+ S   V+ AC     +  G    HS    +G+   LD++ 
Sbjct: 82  YERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMG-RLIHSTVLKNGL--HLDNFV 138

Query: 281 C--MVDLLGRAGLLEEAENFIASMPMK 305
           C  +VD+  + G+++ A+     MP K
Sbjct: 139 CSTLVDMYAKCGMIDNAKQLFDRMPKK 165


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/520 (38%), Positives = 309/520 (59%), Gaps = 39/520 (7%)

Query: 31  RWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRN------------------ 72
           R +F+   + D+VSWN++I G  RNG   E L++  +M   N                  
Sbjct: 193 RKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAEN 252

Query: 73  -DVS-WNSILGGLVRFG-------------------SVDDACRVFNQMPKRSLVSWVVLI 111
            D+S    I G  +R G                    V D+CRVF  + +R  +SW  +I
Sbjct: 253 VDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSII 312

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK 171
           +G  QNG   E L  FR+M    ++P S    S++ ACA L  L  G  ++ YI +    
Sbjct: 313 AGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFD 372

Query: 172 LDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM 231
            +  + ++L+DMYAKCG+I  A Q+F     +D+ ++T+ I G A++G + +A ELFE M
Sbjct: 373 ENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQM 432

Query: 232 KSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGL 291
           +++GI P+ ++++AVL+ACSH G V++ + YF+SM    GI P ++HYA + DLLGRAG 
Sbjct: 433 ETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGR 492

Query: 292 LEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNI 351
           LEEA +FI  M + P   IW TLL ACRVH N +M +++ N ++E D N+ G YILL+NI
Sbjct: 493 LEEAYDFICGMHIGPTGSIWATLLSACRVHXNIDMAEKVANRILEVDPNNTGAYILLANI 552

Query: 352 YVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEI 411
           Y    + + A + R +MR+  I++ P CS IE+   V+ F+AGD SH   ++I +  E +
Sbjct: 553 YSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGDESHPCYEKIREAMEVL 612

Query: 412 VKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRIC 471
           V+ ++  GY  +T  V  D+EEE+K+ ++  HSE+LA+ FG+I T  G  IR+ KN+R+C
Sbjct: 613 VELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTPAGMTIRVTKNLRVC 672

Query: 472 SDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           +DCH+A K +SK+  R+I +RD   +HHF++G+CSC +YW
Sbjct: 673 TDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 712



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 143/294 (48%), Gaps = 17/294 (5%)

Query: 39  DLDVVSWNSMINGYVR-------NGEILEGLKLFDKMPQRN-DVSWNSILGGLVRFGSVD 90
           D D+ + N+++N Y +         + L   ++FD+M +R   V   S+L       S D
Sbjct: 138 DFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVL-------SED 190

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
              ++F  MP++ LVSW  +I+G A+NG  +E L + REM   +L+P+S  L S+L   A
Sbjct: 191 SVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIA 250

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
           +   +  G  ++    ++ +  D  + ++LIDMYAKC  +  + +VF    ++D  ++ S
Sbjct: 251 ENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNS 310

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I G   NG   E    F  M    I P S S+ +++ AC+HL  +  G    H     +
Sbjct: 311 IIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLG-KQLHGYITRN 369

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
           G    +   + +VD+  + G +  A+     M ++ D V W  ++  C +H  A
Sbjct: 370 GFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLR-DMVSWTAMIMGCALHGQA 422



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 97/199 (48%), Gaps = 40/199 (20%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           ++     D++V +SLI  Y+ C RV D+  VF    + D +SWNS+I G V+NG   EGL
Sbjct: 266 IRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGL 325

Query: 63  KLFDKM------PQ----------------------------RNDVSWN-----SILGGL 83
           + F +M      P+                            RN    N     S++   
Sbjct: 326 RFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMY 385

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
            + G++  A ++F++M  R +VSW  +I G A +G+  +A+ LF +M++  ++PN    +
Sbjct: 386 AKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFM 445

Query: 144 SLLSACAQLGALDYGNWVY 162
           ++L+AC+  G +D   W Y
Sbjct: 446 AVLTACSHGGLVDEA-WKY 463



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 82/157 (52%), Gaps = 12/157 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           + +N F  ++F+ +SL+  Y+ CG +R A+ +FD     D+VSW +MI G   +G+  + 
Sbjct: 366 ITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDA 425

Query: 62  LKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLIS 112
           ++LF++M     + N V++ ++L      G VD+A + FN M +   ++     +  +  
Sbjct: 426 IELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSD 485

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
              + GR +EA      M    + P  +I  +LLSAC
Sbjct: 486 LLGRAGRLEEAYDFICGMH---IGPTGSIWATLLSAC 519



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/260 (20%), Positives = 109/260 (41%), Gaps = 34/260 (13%)

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           D+ R+FN +     ++W  +I  +  +G P ++L  F  M +  L P+  +  S+L +CA
Sbjct: 58  DSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCA 117

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAK-------------CGSI------- 190
            L  L+ G  ++ YI +  +  D     AL++MY+K              G +       
Sbjct: 118 LLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTER 177

Query: 191 ------------DLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISP 238
                       D   ++F    +KD+ ++ + I G A NG   E   +   M    + P
Sbjct: 178 TRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKP 237

Query: 239 DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENF 298
           DS +  +VL   +    + +G    H      G+  ++   + ++D+  +   + ++   
Sbjct: 238 DSFTLSSVLPLIAENVDISRG-KEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCR- 295

Query: 299 IASMPMKPDNVIWGTLLGAC 318
           + ++  + D + W +++  C
Sbjct: 296 VFTLLTERDGISWNSIIAGC 315


>gi|414865780|tpg|DAA44337.1| TPA: hypothetical protein ZEAMMB73_255594 [Zea mays]
          Length = 665

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 203/517 (39%), Positives = 302/517 (58%), Gaps = 7/517 (1%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V K     +V+V +S I  YS CGR  DA  VFD     DVVSWN+MI G+ R G     
Sbjct: 149 VAKLRLDRNVYVAHSAISMYSRCGRPEDAYRVFDGMPHRDVVSWNAMIAGFARVGLFDRA 208

Query: 62  LKLFDK-------MPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGF 114
           +++F +       MP    ++      G  +   +    RVF+ M  + L+SW  +++ +
Sbjct: 209 IEVFKQFVVLQGSMPDAGTMAGILPAMGNAKPDDIRFVRRVFDNMQFKELISWNAMLAVY 268

Query: 115 AQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDS 174
           A N    +A+ LF  M+  ++EP+S  L ++L  C +L A   G  ++  I++K +  + 
Sbjct: 269 ANNEFHVKAVELFMLMEKDEVEPDSITLATVLPPCGELSAFSVGKRIHEIIKRKNMCPNL 328

Query: 175 ILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK 234
           +L  AL+DMYA CG +  A ++F     +DV ++TS I     +GH  EA +LFE M  +
Sbjct: 329 LLENALMDMYASCGCLKDAREIFDLMSARDVISWTSIISAYGKHGHGREAVDLFEKMLGQ 388

Query: 235 GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEE 294
           G+ PDSI+++AVL+ACSH G +  G +YF SM   + I P+ +HY CMVDLLGRAG + E
Sbjct: 389 GLEPDSIAFVAVLAACSHAGLLADGKHYFDSMTSRYHIIPKAEHYTCMVDLLGRAGCINE 448

Query: 295 AENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVE 354
           A +FI +M ++P+  +WG LL ACR+H N ++G    + L        G Y+LLSN+Y  
Sbjct: 449 AYDFITTMLIEPNERVWGALLQACRIHSNMDIGLVAADNLFSLVPEQTGYYVLLSNMYAR 508

Query: 355 TLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKK 414
             +  +   VR  M  + IK+ PG S++EL   VH F  GDR H +++ IY   +E++ K
Sbjct: 509 AGRWADVTSVRSVMVNKGIKKFPGTSIVELGDQVHTFHIGDRCHPQSEMIYHKLDELLGK 568

Query: 415 IKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDC 474
           I+  GYN E  + + D+EEE+KE  +  HSEKLA+AF L+ T PG++IR+  N+R CSDC
Sbjct: 569 IRGMGYNPEVEATLHDVEEEDKEDHLSVHSEKLAIAFLLLNTSPGTIIRVTMNLRTCSDC 628

Query: 475 HSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           H A KL+S +  R+I ++D    HH   G CSC +YW
Sbjct: 629 HLAAKLISIITCREIVLKDTNRIHHIVQGVCSCGDYW 665



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 84/167 (50%), Gaps = 12/167 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++ + +   ++ ++N+L+  Y+ CG ++DAR +FD     DV+SW S+I+ Y ++G   E
Sbjct: 318 IIKRKNMCPNLLLENALMDMYASCGCLKDAREIFDLMSARDVISWTSIISAYGKHGHGRE 377

Query: 61  GLKLFDKM----PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV-----SWVVLI 111
            + LF+KM     + + +++ ++L      G + D    F+ M  R  +      +  ++
Sbjct: 378 AVDLFEKMLGQGLEPDSIAFVAVLAACSHAGLLADGKHYFDSMTSRYHIIPKAEHYTCMV 437

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
               + G   EA   +  + ++ +EPN  +  +LL AC     +D G
Sbjct: 438 DLLGRAGCINEA---YDFITTMLIEPNERVWGALLQACRIHSNMDIG 481



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 54/240 (22%), Positives = 102/240 (42%), Gaps = 9/240 (3%)

Query: 101 KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE--PNSAILVSLLSACAQLGALDYG 158
           + + V + VLI     +   ++AL LF  M+       P+       L +C+    L  G
Sbjct: 83  RTTTVCFNVLIRALTASSLHRDALVLFASMRPRGPACFPDHYTYPLALKSCSASKDLLLG 142

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
             ++S + K  +  +  +  + I MY++CG  + A +VF     +DV ++ + I G A  
Sbjct: 143 LQIHSAVAKLRLDRNVYVAHSAISMYSRCGRPEDAYRVFDGMPHRDVVSWNAMIAGFARV 202

Query: 219 GHSIEAFELFEN-MKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELD 277
           G    A E+F+  +  +G  PD+ +   +L A  +         +   +FD    K EL 
Sbjct: 203 GLFDRAIEVFKQFVVLQGSMPDAGTMAGILPAMGNAK--PDDIRFVRRVFDNMQFK-ELI 259

Query: 278 HYACMVDLLGRAGLLEEAENFIASM---PMKPDNVIWGTLLGACRVHRNAEMGQRIGNML 334
            +  M+ +        +A      M    ++PD++   T+L  C       +G+RI  ++
Sbjct: 260 SWNAMLAVYANNEFHVKAVELFMLMEKDEVEPDSITLATVLPPCGELSAFSVGKRIHEII 319


>gi|115455891|ref|NP_001051546.1| Os03g0795200 [Oryza sativa Japonica Group]
 gi|50400032|gb|AAT76420.1| putative PPR repeat containing protein [Oryza sativa Japonica
           Group]
 gi|108711537|gb|ABF99332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113550017|dbj|BAF13460.1| Os03g0795200 [Oryza sativa Japonica Group]
          Length = 611

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/429 (45%), Positives = 283/429 (65%), Gaps = 8/429 (1%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           G V  A  +F++M    +VS+  +I+   ++  P EAL LFREMQ+  L+P S  L+S+L
Sbjct: 187 GDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVL 246

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSIL--CAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           SACA LGAL+ G W++ YI+K  ++LDS++    ALIDMYAKCGS++ A+ VF     +D
Sbjct: 247 SACALLGALELGRWIHDYIRK--MRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRD 304

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
             A++  +   A +G+  EA  +FE MK +G+ PD ++++ VL ACSH G V +G  YF 
Sbjct: 305 KQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFD 364

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
           SM + +GI   + HY C+ DLL R+G LE A  FI  +P+KP  ++W TLL AC  H + 
Sbjct: 365 SMRE-YGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDV 423

Query: 325 EMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIEL 384
           +MG+R+   ++E D +H G Y++ SN+   T + E    VRK M ++ + + PGCS IE+
Sbjct: 424 DMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEI 483

Query: 385 DGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIE--EEEKETVIGY 442
           D +VHEF AGD SH  +QE  +  +E+++++K  GY V   S +F +E  EEEK T + Y
Sbjct: 484 DNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLVGY-VPNTSHVFHVEMGEEEKATSLRY 542

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSEKLA++FGL+ T PG+ +RIVKN+R+C DCHS  KLVS VF R+I +RD   +HHFED
Sbjct: 543 HSEKLAISFGLLNTAPGTTLRIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFED 602

Query: 503 GSCSCLEYW 511
           G CSC +YW
Sbjct: 603 GVCSCGDYW 611



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 128/313 (40%), Gaps = 76/313 (24%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + VK   A   +V  +LI  Y+ CG VR AR +FD  D   VVS+N+MI   VR+    E
Sbjct: 163 VAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGE 222

Query: 61  GLKLFDKMPQR----------NDVSWNSILGGL--------------------------- 83
            L LF +M  +          + +S  ++LG L                           
Sbjct: 223 ALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALID 282

Query: 84  --VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + GS++DA  VF  M  R   +W V++  +A +G  +EA+++F EM+   ++P+   
Sbjct: 283 MYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVT 342

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
            + +L AC+  G +  G   +  +++  I         + D+ A+ G ++          
Sbjct: 343 FLGVLYACSHSGMVSEGLQYFDSMREYGIVSGIKHYGCVTDLLARSGQLE---------- 392

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
                                 A++  + +    I P +I +  +LSAC+  G V+ G  
Sbjct: 393 ---------------------RAYKFIDELP---IKPTAILWRTLLSACAGHGDVDMGKR 428

Query: 262 YFHSMF---DVHG 271
            F  +    D HG
Sbjct: 429 VFERILELDDSHG 441



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 89/196 (45%), Gaps = 2/196 (1%)

Query: 126 LFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYA 185
           +F  M    + P++   VSLL ACA   A + G   +    K        +   LI+MYA
Sbjct: 125 VFVRMMEEGVAPDTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYA 184

Query: 186 KCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIA 245
           +CG +  A  +F     + V +Y + I     +    EA  LF  M++KG+ P S++ I+
Sbjct: 185 ECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLIS 244

Query: 246 VLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMK 305
           VLSAC+ LG +E G  + H       +   +     ++D+  + G LE+A      M  +
Sbjct: 245 VLSACALLGALELG-RWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESR 303

Query: 306 PDNVIWGTLLGACRVH 321
            D   W  ++ A   H
Sbjct: 304 -DKQAWSVMMVAYANH 318


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/582 (36%), Positives = 315/582 (54%), Gaps = 75/582 (12%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWN---------------- 46
           +K S +  +++ N L+  Y+ CG + DA  VFDE    D+ SWN                
Sbjct: 145 IKTSGSIGLYISNRLLDMYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKAR 204

Query: 47  ---------------SMINGYVRNGEILEGLKLFDKMPQRN------------------- 72
                          ++I+G V++    E L+L+  M + +                   
Sbjct: 205 NLFDKMPNRDNFSWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASAAI 264

Query: 73  ---------------------DVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLI 111
                                +V W S+L    + GS+++A  +F++M +R +VSW  +I
Sbjct: 265 PSLHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMI 324

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK 171
             + +NGR +E  ALFR + + ++ PN      +L+ACA L A D G  +++Y+ +    
Sbjct: 325 HTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFD 384

Query: 172 LDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM 231
             S   +AL+ MY+KCG I+ A  VF      D+ ++TS + G A +G   +A   FE +
Sbjct: 385 SFSSAASALVHMYSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELL 444

Query: 232 KSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGL 291
              G  PD I++I VLSAC+H G V+KG  YFHS+ + HG+   +DHYAC++DLL RAG 
Sbjct: 445 LKSGTKPDGIAFIGVLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQ 504

Query: 292 LEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNI 351
             EAE+ I  MP+KPD  IW  LLG CR+H N E+ +R    L E +  +   Y+ L+NI
Sbjct: 505 FTEAESIINEMPIKPDKYIWAALLGGCRIHGNLELAKRAAKSLFEIEPENPATYVTLANI 564

Query: 352 YVETLKGENAEE--VRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWE 409
           Y     G  AEE  +R+TM  R I + PG S IE+   VH F  GD SH K++EI ++  
Sbjct: 565 YASA--GMRAEEANIRETMDSRGIVKKPGMSWIEIRREVHVFSVGDNSHPKSKEILEYLS 622

Query: 410 EIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIR 469
           E+ K++K  GY  +T  V+ D+E E+KE  + YHSEKLA+AFG+I T  G+ I++ KN+R
Sbjct: 623 ELSKRMKEVGYVPDTNFVLHDVELEQKEENLSYHSEKLAVAFGIISTPSGTPIKVFKNLR 682

Query: 470 ICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            C DCH+A+K +S +  RKI +RD   +H FE GSCSC +YW
Sbjct: 683 TCVDCHNAIKFISNITGRKIIVRDSNRFHCFEGGSCSCKDYW 724


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 204/534 (38%), Positives = 314/534 (58%), Gaps = 33/534 (6%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DV V  ++I  Y   GR+ +AR +FDE    +V +W +M++GY +NG +    KLF+ MP
Sbjct: 175 DVVVVTNMIGGYCQVGRLDEARELFDEMKVRNVFTWTTMVSGYAKNGRVDVARKLFEVMP 234

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV------------------------ 105
           +RN+VSW ++L G  + G + +A  +F  MP + +V                        
Sbjct: 235 ERNEVSWTAMLMGYTQSGRMKEAFELFEAMPVKWIVACNEMILQFGLAGEMHRARMMFEG 294

Query: 106 -------SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
                  +W  +I  F + G   EAL LF  MQ   +  N   ++S+LS CA L +LD+G
Sbjct: 295 MKERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVALNFPSMISVLSVCASLASLDHG 354

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
             V++ + +     D  + + LI MY KCG +  A  +F+ +  KDV  + S I G + +
Sbjct: 355 RQVHARLVRSEFDQDLYVASVLITMYVKCGDLVRAKGIFNRFLFKDVVMWNSMITGYSQH 414

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDH 278
           G   EA  +F +M S G+ PD +++I VLSACS+ G V++GF  F +M   + ++P ++H
Sbjct: 415 GLGEEALNVFHDMCSSGVQPDEVTFIGVLSACSYSGKVKEGFEIFEAMKCTYQVEPGIEH 474

Query: 279 YACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338
           YACMVDLLGRAG ++EA   +  MPM+PD ++WG LLGACR H   ++ +     L + +
Sbjct: 475 YACMVDLLGRAGRVDEAMELVEKMPMEPDAIVWGALLGACRNHMKLDLAEVAVEKLAKLE 534

Query: 339 QNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGD-RS 397
             + G Y+LLS++Y    +  + E +RK + +R IK  PGCS IE++  VH F  GD +S
Sbjct: 535 PKNAGPYVLLSHMYATKGRWRDVEVLRKKINRRVIK-FPGCSWIEVEKKVHMFTGGDSKS 593

Query: 398 HEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTK 457
           H +   I Q  E++   ++  GY  +   V+ D++EEEK   +GYHSE+LA+A+GL+   
Sbjct: 594 HPEQHMITQMLEKLSGFLREAGYCPDGSFVLHDVDEEEKTHSLGYHSERLAVAYGLLKVP 653

Query: 458 PGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            G  IR++KN+R+C DCHSA+KL++KV  R+I +RD   +HHF+DGSCSC ++W
Sbjct: 654 EGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIILRDANRFHHFKDGSCSCKDFW 707



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 128/222 (57%), Gaps = 8/222 (3%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDV 74
           N+++  Y    + RDA  +FD+    + VS+N MI+GYV+NG + +  K+FD MP+RN V
Sbjct: 56  NAMVSAYFESHKPRDALLLFDQMPQRNTVSFNGMISGYVKNGMVADARKVFDVMPERNVV 115

Query: 75  SWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD 134
           SW S++ G V+ G V++A ++F +MP+R++VSW V+I G  +  R  +A  LF     + 
Sbjct: 116 SWTSMVRGYVQEGMVEEAEKLFWEMPRRNVVSWTVMIGGLLKESRIDDAKKLF----DMI 171

Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
            E +  ++ +++    Q+G LD    ++  ++ + +         ++  YAK G +D+A 
Sbjct: 172 PEKDVVVVTNMIGGYCQVGRLDEARELFDEMKVRNV----FTWTTMVSGYAKNGRVDVAR 227

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGI 236
           ++F    +++  ++T+ + G   +G   EAFELFE M  K I
Sbjct: 228 KLFEVMPERNEVSWTAMLMGYTQSGRMKEAFELFEAMPVKWI 269



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 151/305 (49%), Gaps = 24/305 (7%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESD--DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRN 72
            S I  Y   G + +AR VFD +      + SWN+M++ Y  + +  + L LFD+MPQRN
Sbjct: 23  TSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFDQMPQRN 82

Query: 73  DVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQS 132
            VS+N ++ G V+ G V DA +VF+ MP+R++VSW  ++ G+ Q G  +EA  LF EM  
Sbjct: 83  TVSFNGMISGYVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPR 142

Query: 133 LDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDL 192
            ++   + ++  LL        +D    ++  I +K    D ++   +I  Y + G +D 
Sbjct: 143 RNVVSWTVMIGGLLKE----SRIDDAKKLFDMIPEK----DVVVVTNMIGGYCQVGRLDE 194

Query: 193 AMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSH 252
           A ++F     ++V  +T+ + G A NG    A +LFE M  +    + +S+ A+L   + 
Sbjct: 195 ARELFDEMKVRNVFTWTTMVSGYAKNGRVDVARKLFEVMPER----NEVSWTAMLMGYTQ 250

Query: 253 LGWVEKGFYYFHSMFDVHGIKPELDHYAC--MVDLLGRAGLLEEAENFIASMPMKPDNVI 310
            G +++ F  F +M       P     AC  M+   G AG +  A      M  + D   
Sbjct: 251 SGRMKEAFELFEAM-------PVKWIVACNEMILQFGLAGEMHRARMMFEGMKER-DEGT 302

Query: 311 WGTLL 315
           W  ++
Sbjct: 303 WNAMI 307



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 153/338 (45%), Gaps = 41/338 (12%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDV 74
           N +I  Y   G V DAR VFD   + +VVSW SM+ GYV+ G + E  KLF +MP+RN V
Sbjct: 87  NGMISGYVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPRRNVV 146

Query: 75  SWNSILGGLVRFGSVDDACRVFNQMPKRSLV----------------------------- 105
           SW  ++GGL++   +DDA ++F+ +P++ +V                             
Sbjct: 147 SWTVMIGGLLKESRIDDAKKLFDMIPEKDVVVVTNMIGGYCQVGRLDEARELFDEMKVRN 206

Query: 106 --SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYS 163
             +W  ++SG+A+NGR   A  LF  M     E N     ++L    Q G +     ++ 
Sbjct: 207 VFTWTTMVSGYAKNGRVDVARKLFEVMP----ERNEVSWTAMLMGYTQSGRMKEAFELFE 262

Query: 164 YIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIE 223
            +  K I    + C  +I  +   G +  A  +F    ++D   + + I      G  +E
Sbjct: 263 AMPVKWI----VACNEMILQFGLAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLE 318

Query: 224 AFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMV 283
           A  LF  M+ +G++ +  S I+VLS C+ L  ++ G    H+         +L   + ++
Sbjct: 319 ALGLFARMQREGVALNFPSMISVLSVCASLASLDHG-RQVHARLVRSEFDQDLYVASVLI 377

Query: 284 DLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            +  + G L  A+        K D V+W +++     H
Sbjct: 378 TMYVKCGDLVRAKGIFNRFLFK-DVVMWNSMITGYSQH 414



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 80/164 (48%), Gaps = 12/164 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +V++ F  D++V + LI  Y  CG +  A+ +F+     DVV WNSMI GY ++G   E 
Sbjct: 361 LVRSEFDQDLYVASVLITMYVKCGDLVRAKGIFNRFLFKDVVMWNSMITGYSQHGLGEEA 420

Query: 62  LKLFDKM----PQRNDVSWNSILGGLVRFGSVDDACRVFNQMP-----KRSLVSWVVLIS 112
           L +F  M     Q ++V++  +L      G V +   +F  M      +  +  +  ++ 
Sbjct: 421 LNVFHDMCSSGVQPDEVTFIGVLSACSYSGKVKEGFEIFEAMKCTYQVEPGIEHYACMVD 480

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALD 156
              + GR  EA+ L  +M    +EP++ +  +LL AC     LD
Sbjct: 481 LLGRAGRVDEAMELVEKMP---MEPDAIVWGALLGACRNHMKLD 521


>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
          Length = 663

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 200/513 (38%), Positives = 304/513 (59%), Gaps = 57/513 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K     DVFV N+L+  Y  C  V  AR VFD                          
Sbjct: 185 VLKKGLDRDVFVGNALMLMYGECACVEYARLVFD-------------------------- 218

Query: 62  LKLFDKMPQRNDVSW----NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQN 117
                KM +R+ VSW     ++L    + G +  A ++FN + ++++VSW  +I+G  ++
Sbjct: 219 -----KMMERDVVSWIPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRS 273

Query: 118 GRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILC 177
            R +E   LF  MQ  ++ PN   +++                      K+ +++D IL 
Sbjct: 274 NRLEEGTKLFIRMQEENIFPNEITMLN----------------------KERVEVDCILN 311

Query: 178 AALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGIS 237
            AL+DMYAKCG I+ A ++F     +D+  + + I G AM+G+  EA ++F  M+ +G+ 
Sbjct: 312 TALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVK 371

Query: 238 PDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAEN 297
           P+ I++I +L ACSH G V +G   F  M    G+ P+++HY CMVDLLGRAGLL+EA  
Sbjct: 372 PNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHE 431

Query: 298 FIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLK 357
            I SMP+KP+ ++WG L+ ACR+H+N ++G+     L+E +  + G  +L+SNIY    +
Sbjct: 432 MIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANR 491

Query: 358 GENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKN 417
             +A  VRKTM+   +K+ PG S+IE++G VHEFL GD+SH + + I +   E+ +K+  
Sbjct: 492 WSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNE 551

Query: 418 YGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSA 477
            GY  +T +V+ +I+EEEKET + YHSEKLA+AFGLI T P + IRIVKN+R+C+DCH+A
Sbjct: 552 AGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTAPSTPIRIVKNLRVCNDCHAA 611

Query: 478 MKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEY 510
            KL+SK++ R I +RDR  +HHF +G CSC +Y
Sbjct: 612 TKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDY 644



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 86/165 (52%), Gaps = 8/165 (4%)

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
            W  +I+ + +  +P+ AL ++ +++ +D E ++ +  S+L AC Q+     G  ++ ++
Sbjct: 126 QWNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFV 185

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAY---TSAIFGL-AMNGHS 221
            KK +  D  +  AL+ MY +C  ++ A  VF    ++DV ++   T+A+  + A  GH 
Sbjct: 186 LKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWIPTTTALLDMYAKCGHL 245

Query: 222 IEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
             A +LF  +  K +    +S+ A+++ C     +E+G   F  M
Sbjct: 246 GLARQLFNGLTQKTV----VSWTAMIAGCIRSNRLEEGTKLFIRM 286



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 81/169 (47%), Gaps = 17/169 (10%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           M+ K     D  +  +L+  Y+ CG +  A  +F E+   D+  WN++I G+  +G   E
Sbjct: 298 MLNKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEE 357

Query: 61  GLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKR-SLVSWV----VLI 111
            L +F +M ++    ND+++  +L      G V +  ++F +M     LV  +     ++
Sbjct: 358 ALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMV 417

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC-----AQLGAL 155
               + G   EA  + +   S+ ++PN+ +  +L++AC      QLG L
Sbjct: 418 DLLGRAGLLDEAHEMIK---SMPIKPNTIVWGALVAACRLHKNPQLGEL 463


>gi|449468588|ref|XP_004152003.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 558

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 187/426 (43%), Positives = 283/426 (66%), Gaps = 1/426 (0%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD-LEPNSAILVSL 145
           GS++ A +VF++M +R  VSW  +I+ F  NG   EAL LF +MQ  D + P+   ++S+
Sbjct: 133 GSLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASEALDLFEKMQLEDKVVPDEVTMLSV 192

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
           +SA + LG L+ G WV ++I +  + +   L  ALIDM+++CGSID ++ VF     ++V
Sbjct: 193 ISAISHLGDLELGRWVRAFIGRLGLGVSVALGTALIDMFSRCGSIDESIVVFEKMAVRNV 252

Query: 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHS 265
             +T+ I GL ++G S EA  +F +M+  G+ PD +++  VL ACSH G V++G+  F S
Sbjct: 253 LTWTALINGLGVHGRSTEALAMFHSMRKSGVQPDYVTFSGVLVACSHGGLVKEGWDIFES 312

Query: 266 MFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAE 325
           +  V+ + P LDHY CMVD+LGRAGLL EA +F+  MPMKP+++IW TLLGAC  H N  
Sbjct: 313 IRKVYRMDPLLDHYGCMVDILGRAGLLNEAYDFVERMPMKPNSIIWRTLLGACVNHNNLG 372

Query: 326 MGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELD 385
           + +++   + +   + +G  +LLSN+Y    +      +R  MR+++I + PGCS I +D
Sbjct: 373 LAEKVKAKISKISSSQNGDLVLLSNVYGAAGRWVEKASIRSKMREKRIGKEPGCSSINVD 432

Query: 386 GVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSE 445
             +HEF++GD SH ++++I +F   I+  ++N GY ++T++V+ DIEEEE+E  + YHSE
Sbjct: 433 QTIHEFVSGDNSHPQSEDITKFLSSIIGDLRNRGYMMQTKNVLHDIEEEEREHSLSYHSE 492

Query: 446 KLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSC 505
           KLA+AF ++  K    IRI+KN+RIC DCHS MK +S  F+RKI IRDR  +HHFE G C
Sbjct: 493 KLAVAFAILSMKDKRTIRIMKNLRICYDCHSFMKHISVRFERKIIIRDRNRFHHFEKGLC 552

Query: 506 SCLEYW 511
           SC +YW
Sbjct: 553 SCHDYW 558



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 133/303 (43%), Gaps = 80/303 (26%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++VK     D+FV+N+LI  Y  CG +  A  VFDE  + D VSW+++I  ++ NG   E
Sbjct: 109 LIVKYGLDSDIFVQNALICVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASE 168

Query: 61  GLKLFDKMPQRNDVSWNSI-----------LGGL-------------------------- 83
            L LF+KM   + V  + +           LG L                          
Sbjct: 169 ALDLFEKMQLEDKVVPDEVTMLSVISAISHLGDLELGRWVRAFIGRLGLGVSVALGTALI 228

Query: 84  ---VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
               R GS+D++  VF +M  R++++W  LI+G   +GR  EALA+F  M+   ++P+  
Sbjct: 229 DMFSRCGSIDESIVVFEKMAVRNVLTWTALINGLGVHGRSTEALAMFHSMRKSGVQPDYV 288

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSIL--CAALIDMYAKCGSIDLAMQVFH 198
               +L AC+  G +  G  ++  I +K  ++D +L     ++D+  + G ++       
Sbjct: 289 TFSGVLVACSHGGLVKEGWDIFESI-RKVYRMDPLLDHYGCMVDILGRAGLLN------- 340

Query: 199 SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC---SHLGW 255
                                   EA++  E M  K   P+SI +  +L AC   ++LG 
Sbjct: 341 ------------------------EAYDFVERMPMK---PNSIIWRTLLGACVNHNNLGL 373

Query: 256 VEK 258
            EK
Sbjct: 374 AEK 376



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 142/300 (47%), Gaps = 16/300 (5%)

Query: 88  SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLS 147
           S+  A  VF+++P    +++  +I   ++   P  +L  F  M+S  +  ++     +L 
Sbjct: 37  SLSYARYVFSRIPSPDTIAYNTIIRSHSR-FFPSHSLFYFFSMRSNGIPLDNFTFPFVLK 95

Query: 148 ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSA 207
           AC++L        ++S I K  +  D  +  ALI +Y  CGS+++A++VF    ++D  +
Sbjct: 96  ACSRL---QINLHLHSLIVKYGLDSDIFVQNALICVYGYCGSLEMAVKVFDEMSERDSVS 152

Query: 208 YTSAIFGLAMNGHSIEAFELFENMK-SKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
           +++ I     NG++ EA +LFE M+    + PD ++ ++V+SA SHLG +E G  +  + 
Sbjct: 153 WSTVIASFLNNGYASEALDLFEKMQLEDKVVPDEVTMLSVISAISHLGDLELG-RWVRAF 211

Query: 267 FDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEM 326
               G+   +     ++D+  R G ++E+      M ++ + + W  L+    VH  +  
Sbjct: 212 IGRLGLGVSVALGTALIDMFSRCGSIDESIVVFEKMAVR-NVLTWTALINGLGVHGRSTE 270

Query: 327 GQRIGNMLIESDQNHDGRYILLSNIYVETLKG-------ENAEEVRKTMRKRKIKRAPGC 379
              + + + +S    D  Y+  S + V    G       +  E +RK  R   +    GC
Sbjct: 271 ALAMFHSMRKSGVQPD--YVTFSGVLVACSHGGLVKEGWDIFESIRKVYRMDPLLDHYGC 328


>gi|413943701|gb|AFW76350.1| hypothetical protein ZEAMMB73_198527 [Zea mays]
          Length = 515

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 187/428 (43%), Positives = 267/428 (62%)

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
           V+ G ++ A  VF++M  R  V+W  ++ G+A NG P+EAL LF  MQ    +P+   +V
Sbjct: 88  VKCGEMEKARSVFDEMKNRDAVAWGAMVGGYASNGHPREALDLFFAMQMEGAKPDCYTVV 147

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
             LSAC +LGALD G      +    +  + +L  ALIDMYAKCGS   A  VF    ++
Sbjct: 148 GALSACTRLGALDLGRQAVGMVHWDEVLGNPVLGTALIDMYAKCGSTSEAWMVFQQMLER 207

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           D+  + + I GL M GH   AF L   MK  G+  +  ++I +L +C+H G V  G  YF
Sbjct: 208 DIIVWNAMILGLGMTGHEKIAFALVGQMKKSGVKLNDNTFIGLLCSCTHTGLVNDGRQYF 267

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
           H+M  V+ I P ++HY CMVDL  RAGLLEEA   I  MPM  + V+WG LLG C++HRN
Sbjct: 268 HNMTHVYRISPRIEHYGCMVDLFSRAGLLEEAHQLIGDMPMLANAVVWGALLGGCKIHRN 327

Query: 324 AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE 383
           A++ +     LI  +  + G Y++LSNIY  + + E+A ++R  M+ + I++ P  S +E
Sbjct: 328 ADLAEHALKQLIRLEPWNSGNYVMLSNIYSNSGRWEDAAKLRLEMKAKGIEKVPASSWVE 387

Query: 384 LDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYH 443
           LDG VH+F  GD SH  + +IY   +E+  ++K  GY   T  VMFD+E EEKE  + +H
Sbjct: 388 LDGKVHKFYVGDDSHPLSDKIYAKLDELGMEMKAMGYEPTTEVVMFDVENEEKENTLVHH 447

Query: 444 SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
           SEK+A+AF LI T+PG  IR+ KN+R+C+DCHSA+KL+S++  R+I +RD   +H F DG
Sbjct: 448 SEKIAIAFSLITTEPGETIRVTKNLRVCTDCHSAIKLISRITCREIVVRDNNRFHCFRDG 507

Query: 504 SCSCLEYW 511
            CSC +YW
Sbjct: 508 HCSCNDYW 515



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 114/220 (51%), Gaps = 7/220 (3%)

Query: 99  MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
           MP  S VSW  LI+ +   G   EA+ + R   +  + P+S   V +L+ACA++  L+ G
Sbjct: 1   MPHPSTVSWTALIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVADLETG 60

Query: 159 NWVYSYIQKKCIKLDSILCA-ALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAM 217
             V++  +++    +S+  A A +D+Y KCG ++ A  VF    ++D  A+ + + G A 
Sbjct: 61  EAVWAAARQEEGVAESVFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGGYAS 120

Query: 218 NGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMF--DVHGIKPE 275
           NGH  EA +LF  M+ +G  PD  + +  LSAC+ LG ++ G      +   +V G  P 
Sbjct: 121 NGHPREALDLFFAMQMEGAKPDCYTVVGALSACTRLGALDLGRQAVGMVHWDEVLG-NPV 179

Query: 276 LDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
           L     ++D+  + G   EA      M ++ D ++W  ++
Sbjct: 180 LG--TALIDMYAKCGSTSEAWMVFQQM-LERDIIVWNAMI 216



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 111/261 (42%), Gaps = 48/261 (18%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           +   A  VFV  + +  Y  CG +  AR VFDE  + D V+W +M+ GY  NG   E L 
Sbjct: 70  EEGVAESVFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGGYASNGHPREALD 129

Query: 64  LFDKMPQRND-----------------------------VSWNSILGGLV---------- 84
           LF  M                                  V W+ +LG  V          
Sbjct: 130 LFFAMQMEGAKPDCYTVVGALSACTRLGALDLGRQAVGMVHWDEVLGNPVLGTALIDMYA 189

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
           + GS  +A  VF QM +R ++ W  +I G    G  K A AL  +M+   ++ N    + 
Sbjct: 190 KCGSTSEAWMVFQQMLERDIIVWNAMILGLGMTGHEKIAFALVGQMKKSGVKLNDNTFIG 249

Query: 145 LLSACAQLGALDYGNWVY---SYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           LL +C   G ++ G   +   +++ +   +++   C  ++D++++ G ++ A Q+    G
Sbjct: 250 LLCSCTHTGLVNDGRQYFHNMTHVYRISPRIEHYGC--MVDLFSRAGLLEEAHQLI---G 304

Query: 202 DKDVSAYTSAIFGLAMNGHSI 222
           D  + A  + ++G  + G  I
Sbjct: 305 DMPMLA-NAVVWGALLGGCKI 324


>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
 gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
          Length = 605

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/535 (38%), Positives = 302/535 (56%), Gaps = 33/535 (6%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D    N+L+  +  CG +  A  VF      DV SWN+M++G  +NG I E   +F  MP
Sbjct: 71  DAVSYNTLLSCHFACGDIDGAWRVFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAMP 130

Query: 70  QRNDVSWNSILG--------------------------------GLVRFGSVDDACRVFN 97
            RN VSWN+++                                 G +  G+V  A   F 
Sbjct: 131 ARNAVSWNAMVAARASSGDMGAAENLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEYFR 190

Query: 98  QMPKRSLVSWVVLISGFAQNGRPKEALALFREM-QSLDLEPNSAILVSLLSACAQLGALD 156
            MP R+LVSW  +++G+ +N R  +AL +F+ M +   ++PN + L S+L  C+ L AL 
Sbjct: 191 AMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSALG 250

Query: 157 YGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLA 216
           +G  V+ +  K  +     +  +L+ MY KCG +D A ++F     KD+ A+ + I G A
Sbjct: 251 FGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKDIVAWNAMISGYA 310

Query: 217 MNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPEL 276
            +G   +A +LFE MK +G+ PD I+ +AVL+AC H G  + G   F +M + + I+P++
Sbjct: 311 QHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYNIEPQV 370

Query: 277 DHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIE 336
           DHY+CMVDLL RAGLLE A N I SMP +P    +GTLL ACRV++N E  +     LIE
Sbjct: 371 DHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTACRVYKNLEFAEFAARKLIE 430

Query: 337 SDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDR 396
            D  + G Y+ L+NIY    + ++   VR+ M+   + + PG S +E+ GV HEF + DR
Sbjct: 431 QDPQNAGAYVQLANIYAVANRWDDVSRVRRWMKDNAVVKTPGYSWMEIKGVRHEFRSNDR 490

Query: 397 SHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICT 456
            H +   I+   + + K +K  GY+ +    + D+EE  K  ++  HSEKLA+AFGLI T
Sbjct: 491 LHPQLDLIHDKLDRLGKLMKAMGYSPDLDFALHDVEESLKSQMLMRHSEKLAIAFGLIST 550

Query: 457 KPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            PG  +RI KN+RIC DCH+A KL+SK+  R+I +RD   +HHF  G CSC +YW
Sbjct: 551 SPGMTLRIFKNLRICGDCHNAAKLISKIEDREIILRDTTRFHHFRGGHCSCGDYW 605


>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
          Length = 611

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/429 (45%), Positives = 283/429 (65%), Gaps = 8/429 (1%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           G V  A  +F++M    +VS+  +I+   ++  P EAL LFREMQ+  L+P S  L+S+L
Sbjct: 187 GDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVL 246

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSIL--CAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           SACA LGAL+ G W++ YI+K  ++LDS++    ALIDMYAKCGS++ A+ VF     +D
Sbjct: 247 SACALLGALELGRWIHDYIRK--MRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRD 304

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
             A++  +   A +G+  EA  +FE MK +G+ PD ++++ VL ACSH G V +G  YF 
Sbjct: 305 KQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFD 364

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
           SM + +GI   + HY C+ DLL R+G LE A  FI  +P+KP  ++W TLL AC  H + 
Sbjct: 365 SMRE-YGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDV 423

Query: 325 EMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIEL 384
           +MG+R+   ++E D +H G Y++ SN+   T + E    VRK M ++ + + PGCS IE+
Sbjct: 424 DMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEI 483

Query: 385 DGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIE--EEEKETVIGY 442
           D +VHEF AGD SH  +QE  +  +E+++++K  GY V   S +F +E  EEEK T + Y
Sbjct: 484 DNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLVGY-VPNTSHVFHVEMGEEEKATSLRY 542

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSEKLA++FGL+ T PG+ +RIVKN+R+C DCHS  KLVS VF R+I +RD   +HHFED
Sbjct: 543 HSEKLAISFGLLNTAPGTTLRIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFED 602

Query: 503 GSCSCLEYW 511
           G CSC +YW
Sbjct: 603 GVCSCGDYW 611



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 109/235 (46%), Gaps = 7/235 (2%)

Query: 92  ACRVFNQMPKRSLVSWV-VLISGFAQNGR----PKEALALFREMQSLDLEPNSAILVSLL 146
           A +VF+++P    V W   L+ G+A+ G      +EA  +F  M    + P++   VSLL
Sbjct: 86  ARQVFDRIPHPGDVVWYNTLLRGYARGGWGGGCAEEAARVFVRMMEEGVAPDTYTFVSLL 145

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
            ACA   A + G   +    K        +   LI+MYA+CG +  A  +F     + V 
Sbjct: 146 KACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVV 205

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
           +Y + I     +    EA  LF  M++KG+ P S++ I+VLSAC+ LG +E G  + H  
Sbjct: 206 SYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELG-RWIHDY 264

Query: 267 FDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
                +   +     ++D+  + G LE+A      M  + D   W  ++ A   H
Sbjct: 265 IRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESR-DKQAWSVMMVAYANH 318



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 128/313 (40%), Gaps = 76/313 (24%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + VK   A   +V  +LI  Y+ CG VR AR +FD  D   VVS+N+MI   VR+    E
Sbjct: 163 VAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGE 222

Query: 61  GLKLFDKMPQR----------NDVSWNSILGGL--------------------------- 83
            L LF +M  +          + +S  ++LG L                           
Sbjct: 223 ALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALID 282

Query: 84  --VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + GS++DA  VF  M  R   +W V++  +A +G  +EA+++F EM+   ++P+   
Sbjct: 283 MYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVT 342

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
            + +L AC+  G +  G   +  +++  I         + D+ A+ G ++          
Sbjct: 343 FLGVLYACSHSGMVSEGLQYFDSMREYGIVSGIKHYGCVTDLLARSGQLE---------- 392

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
                                 A++  + +    I P +I +  +LSAC+  G V+ G  
Sbjct: 393 ---------------------RAYKFIDELP---IKPTAILWRTLLSACAGHGDVDMGKR 428

Query: 262 YFHSMF---DVHG 271
            F  +    D HG
Sbjct: 429 VFERILELDDSHG 441


>gi|125546028|gb|EAY92167.1| hypothetical protein OsI_13880 [Oryza sativa Indica Group]
          Length = 671

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/429 (45%), Positives = 283/429 (65%), Gaps = 8/429 (1%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           G V  A  +F++M    +VS+  +I+   ++  P EAL LFREMQ+  L+P S  L+S+L
Sbjct: 187 GDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVL 246

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSIL--CAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           SACA LGAL+ G W++ YI+K  ++LDS++    ALIDMYAKCGS++ A+ VF     +D
Sbjct: 247 SACALLGALELGRWIHDYIRK--MRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRD 304

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
             A++  +   A +G+  EA  +FE MK +G+ PD ++++ VL ACSH G V +G  YF 
Sbjct: 305 KQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFD 364

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
           SM + +GI   + HY C+ DLL R+G LE A  FI  +P+KP  ++W TLL AC  H + 
Sbjct: 365 SMRE-YGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDV 423

Query: 325 EMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIEL 384
           +MG+R+   ++E D +H G Y++ SN+   T + E    VRK M ++ + + PGCS IE+
Sbjct: 424 DMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEI 483

Query: 385 DGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIE--EEEKETVIGY 442
           D +VHEF AGD SH  +QE  +  +E+++++K  GY V   S +F +E  EEEK T + Y
Sbjct: 484 DNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLVGY-VPNTSHVFHVEMGEEEKATSLRY 542

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSEKLA++FGL+ T PG+ +RIVKN+R+C DCHS  KLVS VF R+I +RD   +HHFED
Sbjct: 543 HSEKLAISFGLLNTAPGTTLRIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFED 602

Query: 503 GSCSCLEYW 511
           G CSC +YW
Sbjct: 603 GVCSCGDYW 611



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 128/313 (40%), Gaps = 76/313 (24%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + VK   A   +V  +LI  Y+ CG VR AR +FD  D   VVS+N+MI   VR+    E
Sbjct: 163 VAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGE 222

Query: 61  GLKLFDKMPQR----------NDVSWNSILGGL--------------------------- 83
            L LF +M  +          + +S  ++LG L                           
Sbjct: 223 ALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALID 282

Query: 84  --VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + GS++DA  VF  M  R   +W V++  +A +G  +EA+++F EM+   ++P+   
Sbjct: 283 MYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVT 342

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
            + +L AC+  G +  G   +  +++  I         + D+ A+ G ++          
Sbjct: 343 FLGVLYACSHSGMVSEGLQYFDSMREYGIVSGIKHYGCVTDLLARSGQLE---------- 392

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
                                 A++  + +    I P +I +  +LSAC+  G V+ G  
Sbjct: 393 ---------------------RAYKFIDELP---IKPTAILWRTLLSACAGHGDVDMGKR 428

Query: 262 YFHSMF---DVHG 271
            F  +    D HG
Sbjct: 429 VFERILELDDSHG 441



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 89/196 (45%), Gaps = 2/196 (1%)

Query: 126 LFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYA 185
           +F  M    + P++   VSLL ACA   A + G   +    K        +   LI+MYA
Sbjct: 125 VFVRMMEEGVAPDTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYA 184

Query: 186 KCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIA 245
           +CG +  A  +F     + V +Y + I     +    EA  LF  M++KG+ P S++ I+
Sbjct: 185 ECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLIS 244

Query: 246 VLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMK 305
           VLSAC+ LG +E G  + H       +   +     ++D+  + G LE+A      M  +
Sbjct: 245 VLSACALLGALELG-RWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESR 303

Query: 306 PDNVIWGTLLGACRVH 321
            D   W  ++ A   H
Sbjct: 304 -DKQAWSVMMVAYANH 318


>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
          Length = 610

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 204/535 (38%), Positives = 302/535 (56%), Gaps = 33/535 (6%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D    N+L+  +  CG +  AR VF      DV SWN+M++G  +NG   E   +F  MP
Sbjct: 76  DTVSYNTLLSCHFACGDIDGARRVFSTMPVKDVTSWNTMVSGLSKNGASEEAAAMFRIMP 135

Query: 70  QRNDVSWNSILG--------------------------------GLVRFGSVDDACRVFN 97
            RN VSWN+++                                 G +  G+V  A   F 
Sbjct: 136 VRNAVSWNAMVAALACSGDMGAAEDLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEFFG 195

Query: 98  QMPKRSLVSWVVLISGFAQNGRPKEALALFREM-QSLDLEPNSAILVSLLSACAQLGALD 156
            MP R+LVSW  +++G+ +N R  +AL +F+ M +   ++PN++ L S+L  C+ L AL 
Sbjct: 196 AMPVRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLLGCSNLSALG 255

Query: 157 YGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLA 216
           +G  V+ +  K  +  +  +  +L+ MY KCG ++ A +VF     KD+ A+ + I G A
Sbjct: 256 FGRQVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTKDIVAWNAMISGYA 315

Query: 217 MNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPEL 276
            +G  ++A +LFE MK +G+ PD I+ +AVL+AC H G  + G   F +M + + I+P++
Sbjct: 316 QHGGGMQAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYKIEPQI 375

Query: 277 DHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIE 336
           DHY+CMVDLL RAGLLE A N I SMP +P    +GTLL ACRV++N E  +     LIE
Sbjct: 376 DHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTACRVYKNLEFAEFAARKLIE 435

Query: 337 SDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDR 396
            D  + G Y+ L+NIY    K  +   VR+ M+   + + PG S +E+ GV HEF + DR
Sbjct: 436 QDPQNAGAYVQLANIYAVANKWADVSRVRRWMKDNAVVKTPGYSWMEIKGVRHEFRSNDR 495

Query: 397 SHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICT 456
            H +   I+   + +   +K  GY  +    + D+E+  K  ++  HSEKLA+AFGLI T
Sbjct: 496 LHPQLGLIHDKLDRLQMLMKAMGYVPDLDFALHDVEDSLKSQMLMRHSEKLAIAFGLIST 555

Query: 457 KPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            PG  +RI KN+RIC DCH+A KL+SK+  R+I +RD   +HHF  G CSC +YW
Sbjct: 556 SPGMTLRIFKNLRICGDCHNAAKLISKIEDREIILRDTTRFHHFRGGHCSCGDYW 610



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 106/229 (46%), Gaps = 39/229 (17%)

Query: 26  RVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVR 85
           R+ DAR +FD     D VS+N++++ +   G+I    ++F  MP ++  SWN+++ GL +
Sbjct: 61  RLADARRLFDSIPHPDTVSYNTLLSCHFACGDIDGARRVFSTMPVKDVTSWNTMVSGLSK 120

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
            G+ ++A  +F  MP R+ VSW  +++  A +G    A  LFR                 
Sbjct: 121 NGASEEAAAMFRIMPVRNAVSWNAMVAALACSGDMGAAEDLFRNAPE------------- 167

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
                                    K D+IL  A++  Y   G++  AM+ F +   +++
Sbjct: 168 -------------------------KTDAILWTAMVSGYMDTGNVQKAMEFFGAMPVRNL 202

Query: 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGI-SPDSISYIAVLSACSHL 253
            ++ + + G   N  + +A  +F+ M    I  P++ +  +VL  CS+L
Sbjct: 203 VSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLLGCSNL 251



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 88/180 (48%), Gaps = 16/180 (8%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +K   + +V V  SL+  Y  CG + DA  VFDE    D+V+WN+MI+GY ++G  ++ +
Sbjct: 265 MKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTKDIVAWNAMISGYAQHGGGMQAI 324

Query: 63  KLFDKMPQRNDVS-WNSILGGL---VRFGSVDDACRVFNQMPKRSLVS-----WVVLISG 113
           KLF+KM     V  W ++L  L   +  G  D   + F  M +   +      +  ++  
Sbjct: 325 KLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYKIEPQIDHYSCMVDL 384

Query: 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD 173
             + G  + A+ +   + S+  EP+ +   +LL+AC     L++      +  +K I+ D
Sbjct: 385 LCRAGLLERAVNM---IHSMPFEPHPSAYGTLLTACRVYKNLEFAE----FAARKLIEQD 437


>gi|297819366|ref|XP_002877566.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323404|gb|EFH53825.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 591

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 204/468 (43%), Positives = 298/468 (63%), Gaps = 9/468 (1%)

Query: 53  VRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSV----DDACRVFNQMPKRSLVSWV 108
           +++G++L GL++  K+     +S + ++  L+   S      DAC+VF+++P+R  VSW 
Sbjct: 124 IKSGDLLGGLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPQRDTVSWN 183

Query: 109 VLISGFAQNGRPKEALALFREMQS-LD--LEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           VLIS + +N R ++ L LF +M++ +D  ++P++   +  L ACA LGALD+G  V+ +I
Sbjct: 184 VLISCYLRNKRTRDVLVLFDKMKNDVDRCVKPDNVTCLLALQACANLGALDFGKQVHDFI 243

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
            +  +     L   L+ MY++CGS+D A +VF+   +++V ++T+ I GLAMNG   EA 
Sbjct: 244 DENGLSGALNLSNTLVSMYSRCGSMDKAYEVFNRMRERNVVSWTAMISGLAMNGFGKEAI 303

Query: 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH-GIKPELDHYACMVD 284
           E F  M   GISP+  +   +LSACSH G V++G  +F  M      IKP L HY C+VD
Sbjct: 304 EAFNEMLKFGISPEEQTLTGLLSACSHSGLVDEGMMFFDRMRSGEFKIKPNLHHYGCIVD 363

Query: 285 LLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGR 344
           LLGRA LL++A + I SM MKPD+ IW TLLGACRVH N E+G+R+   LIE      G 
Sbjct: 364 LLGRARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGNVELGERVIAHLIEFKAEEAGD 423

Query: 345 YILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEI 404
           Y+LL N Y    K E   E+R  M+K++I+  PGCS IEL G VHEF+  D SH + +EI
Sbjct: 424 YVLLLNTYSSVGKWEKVTELRSLMKKKRIQTNPGCSAIELQGTVHEFIVDDVSHPRKEEI 483

Query: 405 YQFWEEIVKKIKNYGYNVETRSVMFDIE-EEEKETVIGYHSEKLALAFGLICTKPGSVIR 463
           Y+   EI +++K  GY  E  S + +++ EEEK   + YHSEKLA+AFG++ T P + IR
Sbjct: 484 YKMLAEINQQLKIAGYVAEITSELHNLDSEEEKGYALRYHSEKLAIAFGILVTPPETTIR 543

Query: 464 IVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           + KN+R C DCH+  K VS V+ R + +RDR  +HHF+ GSCSC ++W
Sbjct: 544 VTKNLRTCVDCHNFAKFVSDVYDRVVIVRDRSRFHHFKGGSCSCNDFW 591



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 123/304 (40%), Gaps = 82/304 (26%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +  + F  D  +  +L+  YS C    DA  VFDE    D VSWN +I+ Y+RN    + 
Sbjct: 139 IFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPQRDTVSWNVLISCYLRNKRTRDV 198

Query: 62  LKLFDKMPQRNDVSW--------------------------------------------N 77
           L LFDKM  +NDV                                              N
Sbjct: 199 LVLFDKM--KNDVDRCVKPDNVTCLLALQACANLGALDFGKQVHDFIDENGLSGALNLSN 256

Query: 78  SILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEP 137
           +++    R GS+D A  VFN+M +R++VSW  +ISG A NG  KEA+  F EM    + P
Sbjct: 257 TLVSMYSRCGSMDKAYEVFNRMRERNVVSWTAMISGLAMNGFGKEAIEAFNEMLKFGISP 316

Query: 138 NSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSIL--CAALIDMYAKCGSIDLAMQ 195
               L  LLSAC+  G +D G   +  ++    K+   L     ++D+  +   +D    
Sbjct: 317 EEQTLTGLLSACSHSGLVDEGMMFFDRMRSGEFKIKPNLHHYGCIVDLLGRARLLD---- 372

Query: 196 VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGW 255
                                      +A+ L ++M+ K   PDS  +  +L AC   G 
Sbjct: 373 ---------------------------KAYSLIKSMEMK---PDSTIWRTLLGACRVHGN 402

Query: 256 VEKG 259
           VE G
Sbjct: 403 VELG 406



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 108/234 (46%), Gaps = 8/234 (3%)

Query: 89  VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL-LS 147
           ++ +CRVF+Q    +L     +I  F+ +  P E   LFR ++     P + +  S  L 
Sbjct: 62  INYSCRVFSQRLNPTLSHCNTMIRAFSLSQTPCEGFRLFRALRRNISFPANPLSSSFALK 121

Query: 148 ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSA 207
            C + G L  G  ++  I       DS+L   L+D+Y+ C +   A +VF     +D  +
Sbjct: 122 CCIKSGDLLGGLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPQRDTVS 181

Query: 208 YTSAIFGLAMNGHSIEAFELFENMKS---KGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           +   I     N  + +   LF+ MK+   + + PD+++ +  L AC++LG ++ G    H
Sbjct: 182 WNVLISCYLRNKRTRDVLVLFDKMKNDVDRCVKPDNVTCLLALQACANLGALDFG-KQVH 240

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVI-WGTLLGA 317
              D +G+   L+    +V +  R G +++A        M+  NV+ W  ++  
Sbjct: 241 DFIDENGLSGALNLSNTLVSMYSRCGSMDKAYEVFNR--MRERNVVSWTAMISG 292


>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 583

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/466 (40%), Positives = 291/466 (62%), Gaps = 34/466 (7%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N +++ Y   GEI    K+FDKMPQR+ ++WN ++  LV+ G  + A ++F +MP+R++ 
Sbjct: 152 NMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVR 211

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           SW  +I G+AQ G+ KEA+ LF EM+   L PN   +V++L ACA +G L  G  ++ + 
Sbjct: 212 SWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFS 271

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
            +   + +  +C  LIDMY KCG ++ A ++F +  ++ V ++++ I GLA +G + +A 
Sbjct: 272 NRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDAL 331

Query: 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL 285
            LF  M + G+ P+++++I +L ACSH+G VEKG  YF SM   +GI P ++HY CMVDL
Sbjct: 332 ALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDL 391

Query: 286 LGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRY 345
             RAGLL+EA  FI +MP+ P+ V+WG LLG C+VH+N ++ +     L + D  +DG Y
Sbjct: 392 FSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNVKLAEEATRHLSKLDPLNDGYY 451

Query: 346 ILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIY 405
           ++LSNIY E  + E+   VRK MR R                                  
Sbjct: 452 VVLSNIYAEAGRWEDVARVRKLMRDRGT-------------------------------- 479

Query: 406 QFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIV 465
             WE++++++K  GY   T  V+ D+EE++KE  +  HSEKLA+ FGLI T PG+VIRI+
Sbjct: 480 --WEKLLQRMKLKGYVPNTSVVLLDMEEDQKEKFLYRHSEKLAVVFGLIKTTPGTVIRIM 537

Query: 466 KNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           KN+R+C DCH+A+K++S V  R+I +RDR  +H F++GSCSC +YW
Sbjct: 538 KNLRVCEDCHAALKIISVVSTREIVVRDRNRFHCFKNGSCSCGDYW 583



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 120/274 (43%), Gaps = 33/274 (12%)

Query: 95  VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA 154
           +F  +    +  W   +  FA+   P +A++LF  ++  D+ P+      +L AC++L  
Sbjct: 69  IFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLD 128

Query: 155 LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD---------- 204
           +  G  V+ Y++K  ++ +  L   ++ +YA CG I +A +VF     +D          
Sbjct: 129 VRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIAR 188

Query: 205 ---------------------VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISY 243
                                V ++TS I G A  G S EA +LF  M+  G+ P+ ++ 
Sbjct: 189 LVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTV 248

Query: 244 IAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP 303
           +AVL AC+ +G +  G    H   +  G +  +     ++D+  + G LE+A     +M 
Sbjct: 249 VAVLVACADMGNLVLG-RRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNME 307

Query: 304 MKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIES 337
            +   V W  ++     H  AE    + N +I +
Sbjct: 308 ER-TVVSWSAMIAGLAAHGRAEDALALFNKMINT 340


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/513 (39%), Positives = 309/513 (60%), Gaps = 34/513 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDES--DDLDVVSWNSMINGYVRNGEIL 59
           +V+  F     V N+LI  Y+  G V  AR + ++S   DLDV+++ +++NGYV      
Sbjct: 266 IVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYV------ 319

Query: 60  EGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGR 119
              KL D  P R                      ++FN +    +V+W  +I G+ QNG 
Sbjct: 320 ---KLGDITPAR----------------------QIFNSLKDPDVVAWTAMIVGYVQNGL 354

Query: 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
             +A+ +F+ M S    PNS  L ++LSA + + +L++G  +++   +    L   +  A
Sbjct: 355 NNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNA 414

Query: 180 LIDMYAKCGSIDLAMQVFHSY-GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISP 238
           L  MYAK GSI+ A +VF+    ++D  ++TS I  LA +G   EA ELFE M + GI P
Sbjct: 415 LTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKP 474

Query: 239 DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENF 298
           D I+Y+ VLSAC+H G VE+G  YF  M +VH I P L HYACMVDL GRAGLL+EA  F
Sbjct: 475 DHITYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKF 534

Query: 299 IASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKG 358
           + +MPM+PD + WG+LL +C+V++N ++ +     L+  + N+ G Y  L+N+Y    K 
Sbjct: 535 VENMPMEPDVIAWGSLLSSCKVYKNVDLAKVAAERLLLIEPNNSGAYSALANVYSSCGKW 594

Query: 359 ENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNY 418
           ++A ++RK M+ R +K+  G S +++    H F   D  H +  EIY+  ++I K+IK  
Sbjct: 595 DDAAKIRKLMKARGVKKEQGLSWVQIQNKTHVFGVEDGLHPQKDEIYKMMDKIWKEIKKM 654

Query: 419 GYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAM 478
           G+  +T SV+ D+E E K+ ++ YHSEKLA+AFG+I T   + +RI+KN+R+C+DCH+A+
Sbjct: 655 GFAPDTESVLHDLEVEVKDQILRYHSEKLAIAFGIISTPENTTLRIMKNLRVCNDCHNAI 714

Query: 479 KLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           K +SK+  R+I +RD   +HHF+DGSCSC +YW
Sbjct: 715 KFISKLVDREIIVRDATRFHHFKDGSCSCKDYW 747



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 145/306 (47%), Gaps = 41/306 (13%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N+++N Y + G  L+   LF++MP +   SWN+IL G  + G ++ A +VF+ +P R  V
Sbjct: 14  NNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVFDLIPVRDSV 73

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           SW  +I G+ Q GR ++A+ +F +M    + P    L ++L++CA  G+   G  V+S++
Sbjct: 74  SWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKKVHSFV 133

Query: 166 QKKCIKLDSILCAALIDMYAK-------------------------------CGSIDLAM 194
            K  +     +  +L++MYAK                               CG +DLA+
Sbjct: 134 VKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLAL 193

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFEN-MKSKGISPDSISYIAVLSACSHL 253
             F    ++D+ ++ S I G   +G   EA + F + +K   + PD  S  + LSAC++L
Sbjct: 194 AQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANL 253

Query: 254 GWVEKG----FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNV 309
             +  G     Y   +MFD  G          ++ +  ++G +E A   I    +   +V
Sbjct: 254 EKLSFGKQIHGYIVRTMFDASGAVGN-----ALISMYAKSGGVEIARRIIEQSGISDLDV 308

Query: 310 IWGTLL 315
           I  T L
Sbjct: 309 IAFTAL 314


>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
 gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
          Length = 810

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/499 (40%), Positives = 301/499 (60%), Gaps = 7/499 (1%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM- 68
           +VFV +S I  Y+ CGR  DA  +F+E    DVVSWN+MI+G+   G     + +F ++ 
Sbjct: 156 NVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELV 215

Query: 69  ----PQRNDVSWNSILG--GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKE 122
               P+ +  +  SIL   G  R   +     VF++M  + L+SW  +++ +  N    E
Sbjct: 216 ALQCPKPDAGTMASILPSMGKARVEDIALLKGVFDEMRFKGLISWNAMLAVYTNNEMHVE 275

Query: 123 ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182
           A+ LF  MQ   +EP++  L ++L +C ++ AL  G  ++  I+++ +    +L  AL+D
Sbjct: 276 AVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMD 335

Query: 183 MYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSIS 242
           MYA CG +  A  VF S G +DV ++TS I     +GH  EA +LFE M  +G+ PDSI+
Sbjct: 336 MYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIA 395

Query: 243 YIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM 302
           ++A+L+ACSH G ++ G +YF+SM     I P+L+HYACMVDLLGRAG + EA +FI  M
Sbjct: 396 FVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVM 455

Query: 303 PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAE 362
           P+KP+  +WG LLGACR+H N ++G    + L+       G Y+LLSNIY    +  +  
Sbjct: 456 PIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQTGYYVLLSNIYARAGRWADVS 515

Query: 363 EVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNV 422
            VR  M  + IK+ PG S  EL   VH F  GD SH +++ IY+   E++++I+  GYN 
Sbjct: 516 MVRSVMESKGIKKLPGVSNAELGDRVHTFHIGDTSHPQSKMIYKKLSELLRRIREMGYNP 575

Query: 423 ETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVS 482
           E  + + D+EEE+KE  +  HSEKLA+AF LI T PG+ IRI  N+R CSDCH A KL+S
Sbjct: 576 EVEATLHDVEEEDKEGHLSVHSEKLAIAFLLINTNPGTPIRITMNLRTCSDCHHAAKLIS 635

Query: 483 KVFKRKISIRDRKHYHHFE 501
            +  R+I ++D    H+ +
Sbjct: 636 TIAGREIILKDVNRIHYMK 654



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 101/241 (41%), Gaps = 7/241 (2%)

Query: 95  VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM--QSLDLEPNSAILVSLLSACAQL 152
           V +  P R+ V + VL+ G       ++AL LF  M  Q     P+       L +CA  
Sbjct: 76  VLDASPDRTTVFFNVLLRGLTAASLHRDALLLFASMRPQGHACFPDHYTYPLALKSCAAT 135

Query: 153 GALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAI 212
             L  G  ++S   +  +  +  +  + I MYA+CG  D A Q+F     +DV ++ + I
Sbjct: 136 DGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMI 195

Query: 213 FGLAMNGHSIEAFELFENMKS-KGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG 271
            G A  G    A ++F  + + +   PD+ +  ++L +      VE        +FD   
Sbjct: 196 SGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGK-ARVED-IALLKGVFDEMR 253

Query: 272 IKPELDHYACMVDLLGRAGLLEEAENFIASMP--MKPDNVIWGTLLGACRVHRNAEMGQR 329
            K  +   A +         +E  E F+      ++PD V   T+L +C       +G+R
Sbjct: 254 FKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKR 313

Query: 330 I 330
           I
Sbjct: 314 I 314


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 204/539 (37%), Positives = 308/539 (57%), Gaps = 39/539 (7%)

Query: 12  FVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQR 71
            V N+ I  Y+ CG +  +  VFD  D   V SWN+++ GY +N +  + L L+ +M   
Sbjct: 343 LVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDS 402

Query: 72  N-DVSW-------------------NSILGGLVRFGSVDD-------------------A 92
             D  W                     I G  +R G   D                   A
Sbjct: 403 GLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAA 462

Query: 93  CRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQL 152
             +F+ M  RSLVSW V+I+G++QNG P EA+ LFR+M S  ++P    ++ +  AC+QL
Sbjct: 463 QVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQL 522

Query: 153 GALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAI 212
            AL  G  ++ +  K  +  D  + +++IDMYAK G I L+ ++F    +KDV+++   I
Sbjct: 523 SALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVII 582

Query: 213 FGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGI 272
            G  ++G   EA ELFE M   G+ PD  ++  +L ACSH G VE G  YF+ M ++H I
Sbjct: 583 AGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNI 642

Query: 273 KPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGN 332
           +P+L+HY C+VD+LGRAG +++A   I  MP  PD+ IW +LL +CR+H N  +G+++ N
Sbjct: 643 EPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVAN 702

Query: 333 MLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFL 392
            L+E +      Y+L+SN++  + K ++   VR  M+   +++  GCS IE+ G VH FL
Sbjct: 703 KLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFL 762

Query: 393 AGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFG 452
            GD    + +E+ + W  +  KI + GY  +T SV+ D+EEE+K  ++  HSEKLA++FG
Sbjct: 763 IGDEMLPELEEVRETWRRLEVKISSIGYTPDTGSVLHDLEEEDKIGILRGHSEKLAISFG 822

Query: 453 LICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           L+ T  G  +R+ KN+RIC DCH+A K +SKV  R I +RD K +HHF DG CSC +YW
Sbjct: 823 LLNTAKGLPVRVYKNLRICGDCHNAAKFISKVVNRDIVVRDNKRFHHFRDGICSCGDYW 881



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 163/362 (45%), Gaps = 43/362 (11%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + VK     ++ V NSLI  YS C  + +A+ +FD++D  ++VSWNSMI GY R  ++  
Sbjct: 229 LAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCR 288

Query: 61  GLKLFDKMP-----------------------------------------QRNDVSWNSI 79
              L  KM                                          Q N++  N+ 
Sbjct: 289 TFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAF 348

Query: 80  LGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS 139
           +    R G++  + RVF+ M  +++ SW  L+ G+AQN  P++AL L+ +M    L+P+ 
Sbjct: 349 IAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDW 408

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
             + SLL AC+++ +L YG  ++ +  +  + +D  +  +L+ +Y  CG    A  +F  
Sbjct: 409 FTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDG 468

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
              + + ++   I G + NG   EA  LF  M S GI P  I+ + V  ACS L  +  G
Sbjct: 469 MEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLG 528

Query: 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACR 319
                     H +  ++   + ++D+  + G +  ++     +  K D   W  ++    
Sbjct: 529 KELHCFALKAH-LTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREK-DVASWNVIIAGYG 586

Query: 320 VH 321
           +H
Sbjct: 587 IH 588



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 132/292 (45%), Gaps = 48/292 (16%)

Query: 5   NSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRN--------- 55
             F  D  +   +I  YS+CG   D+R VFD+    ++  WN++++ Y RN         
Sbjct: 28  TQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSI 87

Query: 56  --------------------------------GEILEGLKLFDKMPQRNDV-SWNSILGG 82
                                           G+I+ G+    KM   +DV   N+++  
Sbjct: 88  FSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMA--TKMDLVSDVFVGNALIAM 145

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM--QSLDLEPNSA 140
             + G V++A +VF  MP+R+LVSW  +I GF++NG  +E+   FREM        P+ A
Sbjct: 146 YGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVA 205

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
            LV++L  CA    ++ G  V+    K  +  + ++  +LIDMY+KC  +  A  +F   
Sbjct: 206 TLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKN 265

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG--ISPDSISYIAVLSAC 250
             K++ ++ S I G A        F L + M+++   +  D  + + VL  C
Sbjct: 266 DKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVC 317



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 134/296 (45%), Gaps = 43/296 (14%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           M  K     DVFV N+LI  Y  CG V +A  VF+   + ++VSWNS+I G+  NG + E
Sbjct: 126 MATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQE 185

Query: 61  GLKLFDKM---------------------PQRNDVSWNSILGGL-VRFGSVDD------- 91
               F +M                         D+     + GL V+ G  ++       
Sbjct: 186 SFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSL 245

Query: 92  -----ACR-------VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD--LEP 137
                 CR       +F++  K+++VSW  +I G+A+         L ++MQ+ D  ++ 
Sbjct: 246 IDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKA 305

Query: 138 NSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVF 197
           +   ++++L  C +   L     ++ Y  +  ++ + ++  A I  Y +CG++  + +VF
Sbjct: 306 DEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVF 365

Query: 198 HSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL 253
                K VS++ + + G A N    +A +L+  M   G+ PD  +  ++L ACS +
Sbjct: 366 DLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRM 421



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 120/234 (51%), Gaps = 5/234 (2%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL-DLEPNSAILVSL 145
           GS  D+  VF+++ +++L  W  ++S + +N   ++A+++F E+ S+ + +P++  L  +
Sbjct: 48  GSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCV 107

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
           + ACA L  L  G  ++    K  +  D  +  ALI MY KCG ++ A++VF    ++++
Sbjct: 108 IKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNL 167

Query: 206 SAYTSAIFGLAMNGHSIEAFELFENM--KSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
            ++ S I G + NG   E+F  F  M    +   PD  + + VL  C+    +EKG    
Sbjct: 168 VSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGM-AV 226

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
           H +    G+  EL     ++D+  +   L EA+  +     K + V W +++G 
Sbjct: 227 HGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQ-LLFDKNDKKNIVSWNSMIGG 279



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 84/170 (49%), Gaps = 16/170 (9%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +K     D+FV +S+I  Y+  G +  ++ +FD   + DV SWN +I GY  +G   E L
Sbjct: 536 LKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEAL 595

Query: 63  KLFDKM----PQRNDVSWNSILGGLVRFGSVDDACRVFNQM-------PKRSLVSWVVLI 111
           +LF+KM     + +D ++  IL      G V+D    FNQM       PK  L  +  ++
Sbjct: 596 ELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPK--LEHYTCVV 653

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161
               + GR  +AL L  EM     +P+S I  SLLS+C   G L  G  V
Sbjct: 654 DMLGRAGRIDDALRLIEEMPG---DPDSRIWSSLLSSCRIHGNLGLGEKV 700



 Score = 45.8 bits (107), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 79/179 (44%), Gaps = 16/179 (8%)

Query: 145 LLSACAQLGALDYGNWVYSYIQKKC-IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           LL AC Q   ++ G  ++  +        D +L   +I MY+ CGS   +  VF     K
Sbjct: 4   LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 63

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKS-KGISPDSISYIAVLSACSHLGWVEKGFYY 262
           ++  + + +     N    +A  +F  + S     PD+ +   V+ AC+  G ++ G   
Sbjct: 64  NLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACA--GLLDLGLGQ 121

Query: 263 FHSMFDVHGIKPELDHYA------CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
                 +HG+  ++D  +       ++ + G+ GL+EEA      MP + + V W +++
Sbjct: 122 I-----IHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPER-NLVSWNSII 174


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/547 (39%), Positives = 322/547 (58%), Gaps = 38/547 (6%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           V+     D+ V ++ +  Y  CG + DA+ +FD+    +V +WN+MI G  +     E L
Sbjct: 362 VEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREAL 421

Query: 63  KLFDKMPQR----------NDVSWN---------------SILGGLV------------- 84
            LF +M +           N +S N               +I  GLV             
Sbjct: 422 SLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGLVDLRVGNALVHMYA 481

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
           + G+   A +VF+ M +R++ +W V+ISG AQ+G   EA +LF +M    + P++   VS
Sbjct: 482 KCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVS 541

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           +LSACA  GAL++   V+S+     +  D  +  AL+ MYAKCGS+D A +VF    ++D
Sbjct: 542 ILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLERD 601

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           V ++T  I GLA +G  ++A +LF  MK +G  P+  S++AVLSACSH G V++G   F 
Sbjct: 602 VYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFL 661

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
           S+   +GI+P ++HY CMVDLLGRAG LEEA++FI +MP++P +  WG LLGAC  + N 
Sbjct: 662 SLTQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGALLGACVTYGNL 721

Query: 325 EMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIEL 384
           EM +      ++        Y+LLSNIY  T   E    VR  M++R I++ PG S IE+
Sbjct: 722 EMAEFAAKERLKLKPKSASTYVLLSNIYAATGNWEQKLLVRSMMQRRGIRKEPGRSWIEV 781

Query: 385 DGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHS 444
           D  +H F+ GD SH +++EIY   ++++K++K  GY  +TR V+ + ++E KE  +  HS
Sbjct: 782 DNQIHSFVVGDTSHPESKEIYAKLKDLIKRLKAEGYVPDTRLVLRNTDQEYKEQALCSHS 841

Query: 445 EKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGS 504
           EKLA+ +GL+ T   + IR+ KN+R+CSDCH+A K +SKV  R+I  RD K +HHF+DG 
Sbjct: 842 EKLAIVYGLMHTPYRNPIRVYKNLRVCSDCHTATKFISKVTGREIVARDAKRFHHFKDGV 901

Query: 505 CSCLEYW 511
           CSC +YW
Sbjct: 902 CSCGDYW 908



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 116/360 (32%), Positives = 180/360 (50%), Gaps = 48/360 (13%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           K  F  D+ V N+LI  Y+ CG + DAR VFD   D DV+SWN+MI G  +NG   E   
Sbjct: 262 KAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFT 321

Query: 64  LFDKMPQR----NDVSWNSILG---------------------GLV-------------- 84
           +F KM Q     +  ++ S+L                      GLV              
Sbjct: 322 IFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYI 381

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
           R GS+DDA  +F+++  R++ +W  +I G AQ    +EAL+LF +M+     P++   V+
Sbjct: 382 RCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVN 441

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           +LSA     AL++   V+SY     + +D  +  AL+ MYAKCG+   A QVF    +++
Sbjct: 442 ILSANVGEEALEWVKEVHSYAIDAGL-VDLRVGNALVHMYAKCGNTMYAKQVFDDMVERN 500

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG---WVEKGFY 261
           V+ +T  I GLA +G   EAF LF  M  +GI PD+ +Y+++LSAC+  G   WV++   
Sbjct: 501 VTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKE--- 557

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
             HS     G+  +L     +V +  + G +++A      M ++ D   W  ++G    H
Sbjct: 558 -VHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDM-LERDVYSWTVMIGGLAQH 615



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 110/360 (30%), Positives = 175/360 (48%), Gaps = 49/360 (13%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++++ F  DV V+ +L+  Y  CG + DA+ +FD+  + +V+SW  MI G    G   E 
Sbjct: 56  IIQSGFQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEA 115

Query: 62  LKLFDKMPQR----NDVSWNSIL---------------------GGLV------------ 84
              F +M +     N  ++ SIL                      GL             
Sbjct: 116 FHRFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHM 175

Query: 85  --RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + GS+DDA  VF+ M +R + SW V+I G AQ+GR +EA +LF +M+     PN    
Sbjct: 176 YAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTY 235

Query: 143 VSLLSACA--QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
           +S+L+A A    GAL++   V+ +  K     D  +  ALI MYAKCGSID A  VF   
Sbjct: 236 LSILNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGM 295

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG---WVE 257
            D+DV ++ + I GLA NG   EAF +F  M+ +G  PDS +Y+++L+     G   WV+
Sbjct: 296 CDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVK 355

Query: 258 KGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
           +     H      G+  +L   +  V +  R G +++A+     + ++ +   W  ++G 
Sbjct: 356 E----VHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVR-NVTTWNAMIGG 410



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 135/288 (46%), Gaps = 41/288 (14%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           V    A D+ V N+L+  Y+  G + DAR VFD   + D+ SW  MI G  ++G   E  
Sbjct: 158 VNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAF 217

Query: 63  KLFDKMPQ----RNDVSWNSIL--------GGL--------------------------- 83
            LF +M +     N  ++ SIL        G L                           
Sbjct: 218 SLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIH 277

Query: 84  --VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + GS+DDA  VF+ M  R ++SW  +I G AQNG   EA  +F +MQ     P+S  
Sbjct: 278 MYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTT 337

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
            +SLL+     GA ++   V+ +  +  +  D  + +A + MY +CGSID A  +F    
Sbjct: 338 YLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLA 397

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
            ++V+ + + I G+A      EA  LF  M+ +G  PD+ +++ +LSA
Sbjct: 398 VRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSA 445



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 149/292 (51%), Gaps = 17/292 (5%)

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
           V+ GS+DDA  +F++M +R+++SW V+I G A  GR +EA   F +MQ     PNS   V
Sbjct: 76  VKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYTYV 135

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           S+L+A A  GAL++   V+S+     + LD  +  AL+ MYAK GSID A  VF    ++
Sbjct: 136 SILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVER 195

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS-----HLGWVEK 258
           D+ ++T  I GLA +G   EAF LF  M+  G  P+  +Y+++L+A +      L WV++
Sbjct: 196 DIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKE 255

Query: 259 GFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
                H      G   +L     ++ +  + G +++A      M  + D + W  ++G  
Sbjct: 256 ----VHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDR-DVISWNAMIGG- 309

Query: 319 RVHRNAEMGQRIGNMLIESDQN----HDGRYILLSNIYVETLKGENAEEVRK 366
            + +N   G     + ++  Q         Y+ L N +V T   E  +EV K
Sbjct: 310 -LAQNG-CGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHK 359



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 116/219 (52%), Gaps = 8/219 (3%)

Query: 110 LISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC 169
           +I G+A+ G  ++A+ ++ +M+    +PN    +S+L AC    +L +G  ++++I +  
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFE 229
            + D  +  AL++MY KCGSID A  +F    +++V ++T  I GLA  G   EAF  F 
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 230 NMKSKGISPDSISYIAVLSACSHLG---WVEKGFYYFHSMFDVHGIKPELDHYACMVDLL 286
            M+ +G  P+S +Y+++L+A +  G   WV++     HS     G+  +L     +V + 
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALEWVKE----VHSHAVNAGLALDLRVGNALVHMY 176

Query: 287 GRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAE 325
            ++G +++A      M ++ D   W  ++G    H   +
Sbjct: 177 AKSGSIDDARVVFDGM-VERDIFSWTVMIGGLAQHGRGQ 214


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 195/511 (38%), Positives = 311/511 (60%), Gaps = 5/511 (0%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           M VK++ ++     N++I  +S  G +  AR +F      + VSWN+MI+GYV +G++  
Sbjct: 94  MPVKDTASW-----NTMISGFSQNGMMDQARELFLVMPVRNSVSWNAMISGYVESGDLDL 148

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
             +LF+  P R+ V+W +++ G ++FG ++ A + F +MP ++LV+W  +I+G+ +N + 
Sbjct: 149 AKQLFEVAPVRSVVAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQA 208

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
           +  L LF+ M      PN + L S+L  C+ L AL  G  V+  I K  +  +     +L
Sbjct: 209 ENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAGTSL 268

Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           + MY KCG ++ A ++F     KDV  + + I G A +G   +A  LF+ M+ +G+ PD 
Sbjct: 269 LSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDW 328

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
           I+++AVLSAC+H G+V+ G  YF+SM   +G++ + DHY C+VDLLGR G L EA + I 
Sbjct: 329 ITFVAVLSACNHAGFVDLGIEYFNSMVRDYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIK 388

Query: 301 SMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGEN 360
            MP KP + I+GTLLGACR+H+N E+ +     L+  D      Y+ L+N+Y    + ++
Sbjct: 389 KMPFKPHSAIFGTLLGACRIHKNLELAEFAAKNLLNLDPESAAGYVQLANVYAAMNRWDH 448

Query: 361 AEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGY 420
              VR++M+  K+ + PG S IE+  VVHEF +GDR H +   I++   E+ +K++  GY
Sbjct: 449 VAMVRRSMKDNKVIKTPGYSWIEVKSVVHEFRSGDRIHPELAFIHEKLNELERKMRLAGY 508

Query: 421 NVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKL 480
             +    + D+ EE+K+ ++  HSEKLA+A+GLI    G+ IR+ KN+R+C DCHSA K 
Sbjct: 509 VPDLEYALHDVGEEQKKQILLRHSEKLAIAYGLIRMPLGTPIRVFKNLRVCGDCHSATKY 568

Query: 481 VSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           +S +  R I +RD   +HHF  G CSC +YW
Sbjct: 569 ISAIEGRVIIVRDTTRFHHFRQGECSCGDYW 599



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 143/317 (45%), Gaps = 11/317 (3%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYV-RNGEILEGLKLFDKM 68
           +V   N +I  +   G +  A  VF+       V+WNSM+ GY  R G+I    +LFD++
Sbjct: 4   NVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDRI 63

Query: 69  PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFR 128
           P+ +  S+N +L   +    V+ A   F+QMP +   SW  +ISGF+QNG   +A  LF 
Sbjct: 64  PEPDIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELFL 123

Query: 129 EMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCG 188
            M       NS    +++S   + G LD    ++     + +    +   A+I  + K G
Sbjct: 124 VMPVR----NSVSWNAMISGYVESGDLDLAKQLFEVAPVRSV----VAWTAMITGFMKFG 175

Query: 189 SIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248
            I+LA + F     K++  + + I G   N  +    +LF+ M   G  P+  S  +VL 
Sbjct: 176 KIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLL 235

Query: 249 ACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDN 308
            CS+L  ++ G    H +     +   +     ++ +  + G LE+A      MP K D 
Sbjct: 236 GCSNLSALKLG-KQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQK-DV 293

Query: 309 VIWGTLLGACRVHRNAE 325
           V W  ++     H   E
Sbjct: 294 VTWNAMISGYAQHGAGE 310


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 194/516 (37%), Positives = 302/516 (58%), Gaps = 31/516 (6%)

Query: 27  VRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLV-- 84
           V  A   F++    D+ SWN++I+G+ +NG++ +   LF  MP++N VSW++++ G V  
Sbjct: 152 VEAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVSWSAMISGYVEH 211

Query: 85  -----------------------------RFGSVDDACRVFNQMPKRSLVSWVVLISGFA 115
                                        +FG V+ A R+F +M  ++LV+W  +I+G+ 
Sbjct: 212 GDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYV 271

Query: 116 QNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI 175
           +N R ++ L +F+ M    + PN   L S+L  C+ L AL  G  ++  + K  +  D+ 
Sbjct: 272 ENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTT 331

Query: 176 LCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG 235
            C +LI MY KCG +D A ++F     KDV ++ + I G A +G   +A  LF+ M++  
Sbjct: 332 ACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWNAMISGYAQHGAGRKALHLFDKMRNGT 391

Query: 236 ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA 295
           + PD I+++AV+ AC+H G+V+ G  YF SM    GI+ +  HY C++DLLGRAG L+EA
Sbjct: 392 MKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEA 451

Query: 296 ENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVET 355
            + I  MP KP   I+GTLLGACR+H+N ++ +     L+  D      Y+ L+NIY  T
Sbjct: 452 VSLIKEMPFKPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATGYVQLANIYAAT 511

Query: 356 LKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKI 415
            K +   +VRK M++  + + PG S IE+  V HEF + DR H +   I++   E+  K+
Sbjct: 512 NKWDQVAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLHPELTSIHKKLNELDGKM 571

Query: 416 KNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCH 475
           K  GY  +    + D+EEE KE ++ +HSEKLA+AFGL+ T PG+ IR+ KN+R+C DCH
Sbjct: 572 KLAGYVPDLEFALHDVEEEHKEKLLLWHSEKLAIAFGLMKTAPGTPIRVFKNLRVCGDCH 631

Query: 476 SAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            A+K +S + KR+I +RD   +HHF +G CSC +YW
Sbjct: 632 RAIKFISAIEKREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 154/315 (48%), Gaps = 11/315 (3%)

Query: 8   AYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVR-NGEILEGLKLFD 66
           A DV   N  I  +     +  AR VF++      V+WN+M++GY +  G++ E  +LFD
Sbjct: 70  ASDVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFD 129

Query: 67  KMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALAL 126
           K+P+ + VS+N +L   +R   V+ A   FN+MP + + SW  LISGFAQNG+ ++A  L
Sbjct: 130 KIPEPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDL 189

Query: 127 FREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAK 186
           F  M     E N     +++S   + G L+    +Y  +  K + +++    A++  Y K
Sbjct: 190 FSVMP----EKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVET----AMLTGYMK 241

Query: 187 CGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAV 246
            G ++LA ++F     K++  + S I G   N  + +  ++F+ M    + P+ +S  +V
Sbjct: 242 FGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSV 301

Query: 247 LSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKP 306
           L  CS+L  +  G    H +     +  +      ++ +  + G L+ A      MP K 
Sbjct: 302 LLGCSNLSALPLG-RQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRK- 359

Query: 307 DNVIWGTLLGACRVH 321
           D + W  ++     H
Sbjct: 360 DVISWNAMISGYAQH 374



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 118/251 (47%), Gaps = 40/251 (15%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           KN     V V+ +++  Y   G+V  A  +F      ++V+WNSMI GYV N    +GLK
Sbjct: 222 KNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLK 281

Query: 64  LFDKMPQR----NDVSWNSILGG-----------------------------------LV 84
           +F  M +     N +S +S+L G                                     
Sbjct: 282 VFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYC 341

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
           + G +D A ++F +MP++ ++SW  +ISG+AQ+G  ++AL LF +M++  ++P+    V+
Sbjct: 342 KCGDLDSAWKLFLEMPRKDVISWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVA 401

Query: 145 LLSACAQLGALDYGNWVYSYIQKKC-IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           ++ AC   G +D G   +  ++K+  I+   +    +ID+  + G +D A+ +      K
Sbjct: 402 VILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFK 461

Query: 204 DVSAYTSAIFG 214
             +A    + G
Sbjct: 462 PHAAIYGTLLG 472



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 95/210 (45%), Gaps = 23/210 (10%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V K+  + D     SLI  Y  CG +  A  +F E    DV+SWN+MI+GY ++G   +
Sbjct: 320 LVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWNAMISGYAQHGAGRK 379

Query: 61  GLKLFDKMPQRND------VSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVV 109
            L LFDKM  RN       +++ +++      G VD   + F  M K        V +  
Sbjct: 380 ALHLFDKM--RNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTC 437

Query: 110 LISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC 169
           +I    + GR  EA++L +EM     +P++AI  +LL AC     LD       +  +  
Sbjct: 438 VIDLLGRAGRLDEAVSLIKEMP---FKPHAAIYGTLLGACRIHKNLDLA----EFAARNL 490

Query: 170 IKLDSILCAA---LIDMYAKCGSIDLAMQV 196
           + LD         L ++YA     D   +V
Sbjct: 491 LNLDPTSATGYVQLANIYAATNKWDQVAKV 520


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/572 (36%), Positives = 323/572 (56%), Gaps = 67/572 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V++NSF     V ++L+  Y  CG+V   R VFD   D  +  WN+MI GY ++    + 
Sbjct: 248 VIENSF-----VGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKA 302

Query: 62  LKLFDKMPQ-----RNDVSWNSILGGLVR------------------------------- 85
           L LF +M        N  + +SI+   VR                               
Sbjct: 303 LMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLETNRYLQNALID 362

Query: 86  ----FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD------- 134
                G +  + R+F+ M  R +VSW  +I+ +   GR  +AL L  EMQ ++       
Sbjct: 363 MYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDG 422

Query: 135 ---------LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYA 185
                     +PNS  L+++L  CA L AL  G  +++Y  +  +     + +AL+DMYA
Sbjct: 423 DYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEIHAYAIRNLLASQVTVGSALVDMYA 482

Query: 186 KCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG-----ISPDS 240
           KCG ++LA +VF     ++V  +   I    M+G   E+ ELFE+M ++G     + P  
Sbjct: 483 KCGCLNLARRVFDQMPIRNVITWNVIIMAYGMHGKGKESLELFEDMVAEGAKGGEVKPTE 542

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
           +++IA+ ++CSH G V++G   FH M + HGI+P  DHYAC+VDL+GRAG +EEA   + 
Sbjct: 543 VTFIALFASCSHSGMVDEGLSLFHKMKNEHGIEPAPDHYACIVDLVGRAGKVEEAYGLVN 602

Query: 301 SMPMKPDNV-IWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGE 359
           +MP   D V  W +LLGACR++ N E+G+     L++   +    Y+LLSNIY      +
Sbjct: 603 TMPSGFDKVGAWSSLLGACRIYHNIEIGEIAAENLLQLQPDVASHYVLLSNIYSSAGLWD 662

Query: 360 NAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYG 419
            A  +R+ M+   +K+ PGCS IE    VH+FLAGD SH ++++++ F E + +++K  G
Sbjct: 663 KAMNLRRRMKAMGVKKEPGCSWIEYGDEVHKFLAGDLSHPQSEKLHDFLETLSERLKKEG 722

Query: 420 YNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMK 479
           Y  +T  V+ DI+EEEKET++  HSEKLA+AFG++ T PG+ IR+ KN+R+C+DCH+A K
Sbjct: 723 YVPDTACVLHDIDEEEKETILCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHTASK 782

Query: 480 LVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            +SK+  R+I +RD + +HHF+DG+CSC +YW
Sbjct: 783 FISKIEDREIILRDARRFHHFKDGTCSCGDYW 814



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 97/383 (25%), Positives = 168/383 (43%), Gaps = 53/383 (13%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM-- 68
           V + N+L+  Y  CG + DA  VFD   + D VSWNS+I+   R  E    +K F  M  
Sbjct: 47  VTIDNTLVNMYGKCGGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLM 106

Query: 69  ----P---------------QRNDVSW--------------------NSILGGLVRFGSV 89
               P               ++ D  W                    N+++    + G +
Sbjct: 107 EGFEPSSFTLVSMALACSNLRKRDGLWLGKQIHGCCFRKGHWRTFSNNALMAMYAKLGRL 166

Query: 90  DDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
           DDA  +      R LV+W  +IS F+QN R  EAL   R M    ++P+     S+L AC
Sbjct: 167 DDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPAC 226

Query: 150 AQLGALDYGNWVYSY-IQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAY 208
           + L  L  G  +++Y ++   +  +S + +AL+DMY  CG ++    VF S  D+ +  +
Sbjct: 227 SHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLW 286

Query: 209 TSAIFGLAMNGHSIEAFELFENMK-SKGISPDSISYIAVLSA---CSHLGWVEKGFYYFH 264
            + I G A + H  +A  LF  M+ + G+  ++ +  +++ A   C  +   E      H
Sbjct: 287 NAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEG----IH 342

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV-HRN 323
                 G++        ++D+  R G ++ ++    SM  + D V W T++ +  +  R+
Sbjct: 343 GYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDR-DIVSWNTIITSYVICGRS 401

Query: 324 AEMGQRIGNML-IESDQNHDGRY 345
           ++    +  M  IE    +DG Y
Sbjct: 402 SDALLLLHEMQRIEEKSTYDGDY 424


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/549 (36%), Positives = 325/549 (59%), Gaps = 39/549 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           + +  F  DV +  ++I  Y+ CG V  AR +FD  ++ +V+SW++MI  Y  +G+  + 
Sbjct: 157 IQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKA 216

Query: 62  LKLFDKM------PQRNDVSW---------NSILGGLV-----RFG-------------- 87
           L LF  M      P +  ++          N  +G L+     +FG              
Sbjct: 217 LDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDM 276

Query: 88  -----SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
                 ++DA  +F++MP+R LV+W V+I G+A+ G   E+L LF +M+   + P+   +
Sbjct: 277 YGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAM 336

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           V+++ ACA+LGA+     +  YIQ+K  +LD IL  A+IDM+AKCG ++ A ++F    +
Sbjct: 337 VTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEE 396

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           K+V ++++ I     +G   +A +LF  M   GI P+ I+ +++L ACSH G VE+G  +
Sbjct: 397 KNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRF 456

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F  M++ + ++ ++ HY C+VDLLGRAG L+EA   I SM ++ D  +WG  LGACR H+
Sbjct: 457 FSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHK 516

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           +  + ++    L+E    + G YILLSNIY    + E+  + R  M +R++K+ PG + I
Sbjct: 517 DVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWI 576

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E+D   H+F  GD +H +++EIY+  + +  K++  GY  +T  V+ D++EE K  ++  
Sbjct: 577 EVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYS 636

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSEKLA+AFGLI T   + IRI+KN+R+C DCH+  KLVS +  R I +RD   +HHF++
Sbjct: 637 HSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKE 696

Query: 503 GSCSCLEYW 511
           G+CSC +YW
Sbjct: 697 GACSCGDYW 705



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 111/380 (29%), Positives = 183/380 (48%), Gaps = 49/380 (12%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V K     D FV  +L+  Y  C  + DAR++FD+  + D+V+W  MI GY   G+  E
Sbjct: 55  IVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANE 114

Query: 61  GLKLFDKMP----------------------------------QRNDVSWNSILGGLV-- 84
            L LF+KM                                   QR     + ILG  +  
Sbjct: 115 SLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMID 174

Query: 85  ---RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G V+ A  +F++M +++++SW  +I+ +  +G+ ++AL LFR M S  + P+   
Sbjct: 175 MYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKIT 234

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           L SLL AC+ L  L  G  ++  + K  + LD  +CAAL+DMY KC  I+ A  +F    
Sbjct: 235 LASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMP 294

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
           ++D+  +T  I G A  G++ E+  LF+ M+ +G+ PD ++ + V+ AC+ LG + K   
Sbjct: 295 ERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKA-- 352

Query: 262 YFHSMFD-VHGIKPELDHY--ACMVDLLGRAGLLEEAENFIASMPMKPDNVI-WGTLLGA 317
              ++ D +   K +LD      M+D+  + G +E A      M  K  NVI W  ++ A
Sbjct: 353 --RTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEK--NVISWSAMIAA 408

Query: 318 CRVHRNAEMGQRIGNMLIES 337
              H        +  M++ S
Sbjct: 409 YGYHGQGRKALDLFPMMLRS 428



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 117/248 (47%), Gaps = 13/248 (5%)

Query: 110 LISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC 169
           ++ GFA+ G        FRE+      P++  L  ++ AC  L  L  G  ++  + K  
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFE 229
           + LD  +CAAL+DMY KC  I+ A  +F    ++D+  +T  I G A  G + E+  LFE
Sbjct: 61  LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFE 120

Query: 230 NMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD--VHGIKPELDHY--ACMVDL 285
            M+ +G+ PD ++ + V+ AC+ LG + K       + D  +   K +LD      M+D+
Sbjct: 121 KMREEGVVPDKVAMVTVVFACAKLGAMHKA-----RIIDDYIQRKKFQLDVILGTAMIDM 175

Query: 286 LGRAGLLEEAENFIASMPMKPDNVI-WGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGR 344
             + G +E A      M  K  NVI W  ++ A   H        +  M++ S    D +
Sbjct: 176 YAKCGCVESAREIFDRMEEK--NVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPD-K 232

Query: 345 YILLSNIY 352
             L S +Y
Sbjct: 233 ITLASLLY 240



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 111/239 (46%), Gaps = 40/239 (16%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V K     D FV  +L+  Y  C  + DAR++FD+  + D+V+W  MI GY   G   E
Sbjct: 257 IVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANE 316

Query: 61  GLKLFDKMP----------------------------------QRNDVSWNSILGGLV-- 84
            L LFDKM                                   QR     + ILG  +  
Sbjct: 317 SLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMID 376

Query: 85  ---RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G V+ A  +F++M +++++SW  +I+ +  +G+ ++AL LF  M    + PN   
Sbjct: 377 MHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKIT 436

Query: 142 LVSLLSACAQLGALDYGNWVYSYI-QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
           LVSLL AC+  G ++ G   +S + +   ++ D      ++D+  + G +D A+++  S
Sbjct: 437 LVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIES 495


>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
 gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
          Length = 562

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/549 (37%), Positives = 302/549 (55%), Gaps = 46/549 (8%)

Query: 7   FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFD 66
           F      +N L+  Y+ CG + +AR +F+   +  VVSW++MI  Y  +G   E L LF 
Sbjct: 16  FHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGAYALHGRGQEALLLFH 75

Query: 67  KMPQRND--------------------------------------------VSWNSILGG 82
           +M  RND                                            +  N++L  
Sbjct: 76  RM--RNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELKSSNAILENALLNM 133

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
            VR GS+++A +VF+ M      SW  +I+   +N    EAL LF  M    + P S  L
Sbjct: 134 YVRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEALELFHRMNLEGIPPTSVTL 193

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S+L+ACA  GAL  G  ++S +         +   AL+DMYAKCGS++ + +VF +   
Sbjct: 194 ASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAMET 253

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           ++  ++T+ I  LA +G   EA ELF+ M  +G+  D+ ++I VL ACSH G +++   +
Sbjct: 254 RNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRACSHAGLIKESLEF 313

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           FHSM + + I P   HY   +D +GRAG L++AE  I SMP  P+ + W TLL ACR+H 
Sbjct: 314 FHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPETLTWKTLLNACRIHS 373

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
            AE   ++  +L +        Y LL N+Y  T +  +   VRK M  R +K+ PG S I
Sbjct: 374 QAERATKVAELLSKLAPEDSMAYTLLGNVYAATGRYGDQMRVRKGMTDRGLKKVPGKSFI 433

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E+   VHEF+AGDR+H    EI    E++  +++  GY   T+ V+  + EEEKE +IG 
Sbjct: 434 EVKNKVHEFVAGDRAHPSRDEILLELEKLGGRMREAGYVPNTKDVLHAVNEEEKEQLIGL 493

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSEKLA+AFGLI T PG+ + IVKN+R+CSDCH+A K+++K+ +R+I +RD   +HHFED
Sbjct: 494 HSEKLAIAFGLIATPPGTPLLIVKNLRVCSDCHAATKVIAKIMRRRIVVRDTHRFHHFED 553

Query: 503 GSCSCLEYW 511
           G CSC +YW
Sbjct: 554 GQCSCKDYW 562



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/210 (21%), Positives = 89/210 (42%), Gaps = 13/210 (6%)

Query: 5   NSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKL 64
           + F   V  + +L+  Y+ CG +  +  VF   +  + VSW +MI    ++G+  E L+L
Sbjct: 219 SGFHSSVLAQTALLDMYAKCGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALEL 278

Query: 65  FDKMPQRNDV----SWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLISGFA 115
           F +M     V    ++  +L      G + ++   F+ M +   ++     +   +    
Sbjct: 279 FKEMNLEGMVADATTFICVLRACSHAGLIKESLEFFHSMVEDYAIAPTETHYCRALDTIG 338

Query: 116 QNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI 175
           + GR ++A  L   + S+   P +    +LL+AC      +    V   + K   + DS+
Sbjct: 339 RAGRLQDAEEL---IHSMPFHPETLTWKTLLNACRIHSQAERATKVAELLSKLAPE-DSM 394

Query: 176 LCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
               L ++YA  G     M+V     D+ +
Sbjct: 395 AYTLLGNVYAATGRYGDQMRVRKGMTDRGL 424


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/548 (39%), Positives = 321/548 (58%), Gaps = 38/548 (6%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++ K+ F  D FV  +L+  Y+ CG +  A  VFDE    ++VSWNSMI G+V+N     
Sbjct: 225 LIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKLYGR 284

Query: 61  GLKLFDKMPQ--RNDVSWNSIL----------------GGLVRFGSV------------- 89
            + +F ++     + VS +S+L                G +V+ G V             
Sbjct: 285 AIGVFREVLSLGPDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYVKNSLVDMY 344

Query: 90  ------DDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
                 +DA ++F     R +V+W V+I G  +    ++A   F+ M    +EP+ A   
Sbjct: 345 CKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYS 404

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           SL  A A + AL  G  ++S++ K     +S + ++L+ MY KCGS+  A QVF    + 
Sbjct: 405 SLFHASASIAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKEH 464

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           +V  +T+ I     +G + EA +LFE M ++G+ P+ I++++VLSACSH G ++ GF YF
Sbjct: 465 NVVCWTAMITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACSHTGKIDDGFKYF 524

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
           +SM +VH IKP L+HYACMVDLLGR G LEEA  FI SMP +PD+++WG LLGAC  H N
Sbjct: 525 NSMANVHNIKPGLEHYACMVDLLGRVGRLEEACRFIESMPFEPDSLVWGALLGACGKHAN 584

Query: 324 AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE 383
            EMG+ +   L + + ++ G Y+LLSNIY+     E A+EVR+ M    +++  GCS I+
Sbjct: 585 VEMGREVAERLFKLEPDNPGNYMLLSNIYIRHGMLEEADEVRRLMGINGVRKESGCSWID 644

Query: 384 LDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYH 443
           +      F A DRSH +TQEIY   +++ + IK  GY  ET+     +E  E+++ +  H
Sbjct: 645 VKNRTFVFNANDRSHSRTQEIYGMLQKLKELIKRRGYVAETQFATNSVEGSEEQS-LWCH 703

Query: 444 SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
           SEKLALAFGL+   PGS +RI KN+R C DCH+ MK  S++F+R+I +RD   +H F +G
Sbjct: 704 SEKLALAFGLLVLPPGSPVRIKKNLRTCGDCHTVMKFASEIFQREIIVRDINRFHRFTNG 763

Query: 504 SCSCLEYW 511
           SCSC++YW
Sbjct: 764 SCSCMDYW 771



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 121/252 (48%), Gaps = 8/252 (3%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRS--LVSWVVLISGFAQNGRPKEALALFREMQSLD 134
           N++L    + GS+     +FN  P  S  +V+W  LI+  +++ +P +AL  F  M++  
Sbjct: 136 NTLLLLYAKCGSIHHTLLLFNTYPHPSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTG 195

Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
           + PN     ++L ACA    L  G  +++ I K C   D  +  AL+DMYAKCGS+ LA 
Sbjct: 196 IYPNHFTFSAILPACAHAALLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAE 255

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
            VF     +++ ++ S I G   N     A  +F  + S G  PD +S  +VLSAC+  G
Sbjct: 256 NVFDEMPHRNLVSWNSMIVGFVKNKLYGRAIGVFREVLSLG--PDQVSISSVLSACA--G 311

Query: 255 WVEKGF-YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGT 313
            VE  F    H      G+   +     +VD+  + GL E+A         + D V W  
Sbjct: 312 LVELDFGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGGDR-DVVTWNV 370

Query: 314 LLGACRVHRNAE 325
           ++  C   RN E
Sbjct: 371 MIMGCFRCRNFE 382



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 134/286 (46%), Gaps = 43/286 (15%)

Query: 15  NSLIQFYSVCGRVRDARWVFD--ESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQR- 71
           N+L+  Y+ CG +     +F+       +VV+W ++IN   R+ +  + L  F++M    
Sbjct: 136 NTLLLLYAKCGSIHHTLLLFNTYPHPSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTG 195

Query: 72  ---NDVSWNSILGG-----------------------------------LVRFGSVDDAC 93
              N  ++++IL                                       + GS+  A 
Sbjct: 196 IYPNHFTFSAILPACAHAALLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAE 255

Query: 94  RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153
            VF++MP R+LVSW  +I GF +N     A+ +FRE+  L L P+   + S+LSACA L 
Sbjct: 256 NVFDEMPHRNLVSWNSMIVGFVKNKLYGRAIGVFREV--LSLGPDQVSISSVLSACAGLV 313

Query: 154 ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIF 213
            LD+G  V+  I K+ +     +  +L+DMY KCG  + A ++F   GD+DV  +   I 
Sbjct: 314 ELDFGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIM 373

Query: 214 GLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
           G     +  +A   F+ M  +G+ PD  SY ++  A + +  + +G
Sbjct: 374 GCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQG 419


>gi|222624541|gb|EEE58673.1| hypothetical protein OsJ_10095 [Oryza sativa Japonica Group]
          Length = 669

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/499 (40%), Positives = 301/499 (60%), Gaps = 7/499 (1%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM- 68
           +VFV +S I  Y+ CGR  DA  +F+E    DVVSWN+MI+G+   G     + +F ++ 
Sbjct: 46  NVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELV 105

Query: 69  ----PQRNDVSWNSILG--GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKE 122
               P+ +  +  SIL   G  R   +     VF++M  + L+SW  +++ +  N    E
Sbjct: 106 ALQCPKPDAGTMASILPSMGKARVEDIALLKGVFDEMRFKGLISWNAMLAVYTNNEMHVE 165

Query: 123 ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182
           A+ LF  MQ   +EP++  L ++L +C ++ AL  G  ++  I+++ +    +L  AL+D
Sbjct: 166 AVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMD 225

Query: 183 MYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSIS 242
           MYA CG +  A  VF S G +DV ++TS I     +GH  EA +LFE M  +G+ PDSI+
Sbjct: 226 MYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIA 285

Query: 243 YIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM 302
           ++A+L+ACSH G ++ G +YF+SM     I P+L+HYACMVDLLGRAG + EA +FI  M
Sbjct: 286 FVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVM 345

Query: 303 PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAE 362
           P+KP+  +WG LLGACR+H N ++G    + L+       G Y+LLSNIY    +  +  
Sbjct: 346 PIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQTGYYVLLSNIYARAGRWADVS 405

Query: 363 EVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNV 422
            VR  M  + IK+ PG S  EL   VH F  GD SH +++ IY+   E++++I+  GYN 
Sbjct: 406 MVRSVMESKGIKKLPGVSNAELGDRVHTFHIGDTSHPQSKMIYKKLSELLRRIREMGYNP 465

Query: 423 ETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVS 482
           E  + + D+EEE+KE  +  HSEKLA+AF LI T PG+ IRI  N+R CSDCH A KL+S
Sbjct: 466 EVEATLHDVEEEDKEGHLSVHSEKLAIAFLLINTNPGTPIRITMNLRTCSDCHHAAKLIS 525

Query: 483 KVFKRKISIRDRKHYHHFE 501
            +  R+I ++D    H+ +
Sbjct: 526 TIAGREIILKDVNRIHYMK 544



 Score = 46.2 bits (108), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 5/203 (2%)

Query: 131 QSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSI 190
           Q   L P    L     +CA    L  G  ++S   +  +  +  +  + I MYA+CG  
Sbjct: 4   QGPGLLPGPLHLPVGFKSCAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRP 63

Query: 191 DLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKS-KGISPDSISYIAVLSA 249
           D A Q+F     +DV ++ + I G A  G    A ++F  + + +   PD+ +  ++L +
Sbjct: 64  DDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPS 123

Query: 250 CSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP--MKPD 307
                 VE        +FD    K  +   A +         +E  E F+      ++PD
Sbjct: 124 MGK-ARVED-IALLKGVFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPD 181

Query: 308 NVIWGTLLGACRVHRNAEMGQRI 330
            V   T+L +C       +G+RI
Sbjct: 182 AVTLATVLPSCGEVSALSLGKRI 204


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/541 (38%), Positives = 303/541 (56%), Gaps = 39/541 (7%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D+ V  SLI+ Y+ CG +  AR VFD     DVVSW  MI GY  NG I +   LF  M 
Sbjct: 293 DIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQ 352

Query: 70  ----QRNDVSWNSILGG-----------------------------------LVRFGSVD 90
               Q + +++  I+                                       + G++ 
Sbjct: 353 EEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIK 412

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           DA +VF+ MP+R +VSW  +I  + +NG   EA   F  M+  ++EP+    ++LL+AC 
Sbjct: 413 DARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACG 472

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
            LGALD G  +Y+   K  +     L  ALI M AK GS++ A  +F +   +DV  + +
Sbjct: 473 HLGALDVGMEIYTQAIKADLVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITWNA 532

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I G +++G++ EA  LF+ M  +   P+S++++ VLSACS  G+V++G  +F  + +  
Sbjct: 533 MIGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEGR 592

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
           GI P +  Y CMVDLLGRAG L+EAE  I SMP+KP + IW +LL ACR+H N ++ +R 
Sbjct: 593 GIVPTVKLYGCMVDLLGRAGELDEAELLIKSMPVKPTSSIWSSLLVACRIHGNLDVAERA 652

Query: 331 GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHE 390
               +  D      Y+ LS++Y      EN  +VRK M  R I++  GC+ IE+ G VH 
Sbjct: 653 AERCLMIDPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGIRKEQGCTWIEVAGKVHT 712

Query: 391 FLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALA 450
           F+  DRSH    EIY     ++  IK  GY   T++V+ D+ E++KE  I YHSEKLA+A
Sbjct: 713 FVVEDRSHPLVGEIYAELARLMNAIKREGYIPITQNVLHDVGEQQKEEAISYHSEKLAIA 772

Query: 451 FGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEY 510
           +G++    G+ IRI KN+R+CSDCHSA K +SKV  R+I  RD   +HHF+DG CSC +Y
Sbjct: 773 YGVLSLPSGTPIRIYKNLRVCSDCHSASKFISKVTGREIIARDASRFHHFKDGVCSCGDY 832

Query: 511 W 511
           W
Sbjct: 833 W 833



 Score =  174 bits (442), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 112/366 (30%), Positives = 180/366 (49%), Gaps = 49/366 (13%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VV   F  D  +  +L+  Y   G + DAR VFD     DV ++N M+ GY ++G+  + 
Sbjct: 184 VVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKA 243

Query: 62  LKLFDKMPQ----RNDVSWNSILGG-------------------------------LVRF 86
            +LF +M Q     N +S+ SIL G                               L+R 
Sbjct: 244 FELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRM 303

Query: 87  ----GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
               GS++ A RVF+ M  R +VSW V+I G+A+NG  ++A  LF  MQ   ++P+    
Sbjct: 304 YTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITY 363

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           + +++ACA    L++   ++S +       D ++  AL+ MYAKCG+I  A QVF +   
Sbjct: 364 MHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPR 423

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           +DV ++++ I     NG+  EAFE F  MK   I PD ++YI +L+AC HLG ++ G   
Sbjct: 424 RDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEI 483

Query: 263 FHSMFDVHGIKPELDHYACMVDLL----GRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
           +        IK +L  +  + + L     + G +E A     +M ++ D + W  ++G  
Sbjct: 484 Y-----TQAIKADLVSHVPLGNALIIMNAKHGSVERARYIFDTM-VRRDVITWNAMIGGY 537

Query: 319 RVHRNA 324
            +H NA
Sbjct: 538 SLHGNA 543



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 104/355 (29%), Positives = 183/355 (51%), Gaps = 41/355 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++     +++  N+LI+ YS+CG V +AR +FD  ++  VV+WN++I GY + G + E 
Sbjct: 83  IIQGGRQLNIYELNTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEA 142

Query: 62  LKLFDKMP----QRNDVSWNSIL------GGL---------------------------- 83
             LF +M     + + +++ S+L       GL                            
Sbjct: 143 FALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSM 202

Query: 84  -VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
            V+ GS+DDA +VF+ +  R + ++ V++ G+A++G  ++A  LF  MQ + L+PN    
Sbjct: 203 YVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISF 262

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           +S+L  C    AL +G  V++      +  D  +  +LI MY  CGSI+ A +VF +   
Sbjct: 263 LSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKV 322

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           +DV ++T  I G A NG+  +AF LF  M+ +GI PD I+Y+ +++AC+    +      
Sbjct: 323 RDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHA-RE 381

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
            HS  D+ G   +L     +V +  + G +++A     +MP + D V W  ++GA
Sbjct: 382 IHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRR-DVVSWSAMIGA 435



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 156/324 (48%), Gaps = 40/324 (12%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           G+V +A ++F+ +  +++V+W  LI+G+AQ G  KEA ALFR+M    LEP+    +S+L
Sbjct: 106 GNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVL 165

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
            AC+    L++G  V++ +       D  +  AL+ MY K GS+D A QVF     +DVS
Sbjct: 166 DACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVS 225

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC---SHLGW-------- 255
            +   + G A +G   +AFELF  M+  G+ P+ IS++++L  C     L W        
Sbjct: 226 TFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQC 285

Query: 256 VEKGFY-----------YFHSMFDVHGIKPELDH--------YACMVDLLGRAGLLEEAE 296
           +  G              + +   + G +   D+        +  M++     G +E+A 
Sbjct: 286 MNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAF 345

Query: 297 NFIASMP---MKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLS---- 349
              A+M    ++PD + +  ++ AC +  N    + I + +   D    G  +L+S    
Sbjct: 346 GLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQV---DIAGFGTDLLVSTALV 402

Query: 350 NIYVETLKGENAEEVRKTMRKRKI 373
           ++Y +    ++A +V   M +R +
Sbjct: 403 HMYAKCGAIKDARQVFDAMPRRDV 426



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 79/171 (46%), Gaps = 7/171 (4%)

Query: 138 NSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVF 197
           +S   V L   C +L     G  V  +I +   +L+      LI +Y+ CG++  A Q+F
Sbjct: 56  DSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIF 115

Query: 198 HSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSH---LG 254
            S  +K V  + + I G A  GH  EAF LF  M  +G+ P  I++++VL ACS    L 
Sbjct: 116 DSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLN 175

Query: 255 WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMK 305
           W ++     H+     G   +      +V +  + G +++A      + ++
Sbjct: 176 WGKE----VHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIR 222


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 201/542 (37%), Positives = 311/542 (57%), Gaps = 40/542 (7%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DV V NS +  +   G + DAR +F++  D DVV+WN +I  YV+N    E ++LF ++ 
Sbjct: 240 DVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQ 299

Query: 70  Q----RNDVSW---------------NSILGGLVRFGSVD-------------------- 90
           Q     ND+++                 ++  LV+    D                    
Sbjct: 300 QDGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAPG 359

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
            A ++F  M  + +++W V+   +AQNG  KEAL LF+EMQ     P SA LV++L  CA
Sbjct: 360 QAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCA 419

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
            L AL  G  ++S+I +   +++ ++  ALI+MY KCG +  AM VF     +D+  + S
Sbjct: 420 HLAALQKGRQIHSHIIENRFRMEMVVETALINMYGKCGKMAEAMSVFEKMAKRDILVWNS 479

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            +   A +G+  E  +LF  M+  G+  D++S+++VLSA SH G V  G+ YF +M    
Sbjct: 480 MLGAYAQHGYYDETLQLFNQMQLDGVKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDF 539

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMP-MKPDNVIWGTLLGACRVHRNAEMGQR 329
            I P  + Y C+VDLLGRAG ++EA + +  +    PD ++W TLLGACR H   +  + 
Sbjct: 540 SITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKA 599

Query: 330 IGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVH 389
               ++E D +H G Y++LSN+Y      +    +RK MR R +K+ PG S IE+   VH
Sbjct: 600 AAEQVLERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVH 659

Query: 390 EFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLAL 449
           EFL GDRSH +   IY   + +  +++  GY  +T+ ++ D+E+E KE ++ YHSE+LA+
Sbjct: 660 EFLEGDRSHPRRHPIYAELDVLNSEMRAAGYIPDTKMILHDVEDERKEDMLFYHSERLAI 719

Query: 450 AFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLE 509
           AFGLI T PG+ +R++KN+R+CSDCH+A K +SK+  R+I +RD   +H+F+DG CSC +
Sbjct: 720 AFGLISTPPGTPLRVIKNLRVCSDCHTATKYISKLRGREILVRDTHRFHNFKDGRCSCKD 779

Query: 510 YW 511
           YW
Sbjct: 780 YW 781



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 99/359 (27%), Positives = 169/359 (47%), Gaps = 41/359 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEI--- 58
           +++  F  DVFV  +LI  Y+ CG VR A   F   +  DVVSW +MI   V++ +    
Sbjct: 131 ILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALA 190

Query: 59  --------LEGL--------KLFDKMPQRNDVSWNSILGGLVRFGSVD------------ 90
                   L+G+         +F+     N +S    + GLV  G ++            
Sbjct: 191 RWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLVSSGVMESDVRVMNSAVNM 250

Query: 91  --------DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
                   DA R+F  M  R +V+W ++I+ + QN    EA+ LF  +Q   ++ N    
Sbjct: 251 FGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDGVKANDITF 310

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           V +L+    L +L  G  ++  +++     D+++  AL+ +Y +C +   A ++F   G 
Sbjct: 311 VLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAPGQAWKIFVDMGS 370

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           KDV  +T      A NG   EA +LF+ M+ +G  P S + +AVL  C+HL  ++KG   
Sbjct: 371 KDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKG-RQ 429

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            HS    +  + E+     ++++ G+ G + EA +    M  K D ++W ++LGA   H
Sbjct: 430 IHSHIIENRFRMEMVVETALINMYGKCGKMAEAMSVFEKMA-KRDILVWNSMLGAYAQH 487



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 139/289 (48%), Gaps = 3/289 (1%)

Query: 66  DKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALA 125
           D+  ++N++    ++    + GSV +A +VF  + ++ + +W  +I  + Q G    AL 
Sbjct: 32  DRGFEQNNLVCGHLIQMYAQCGSVPEAQQVFEILERKDVFAWTRMIGIYCQQGDYDRALG 91

Query: 126 LFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYA 185
           +F +MQ  D+ P     V++L+ACA   +L  G  ++  I ++  + D  +  ALI+MY 
Sbjct: 92  MFYQMQEEDVMPTKVTYVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYN 151

Query: 186 KCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIA 245
           KCGS+  A   F     +DV ++T+ I     +     A  L+  M+  G+ P+ I+   
Sbjct: 152 KCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYT 211

Query: 246 VLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMK 305
           V +A     ++ +G  + + +     ++ ++      V++ G AGLL +A      M + 
Sbjct: 212 VFNAYGDPNYLSEG-KFVYGLVSSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDM-VD 269

Query: 306 PDNVIWGTLLGACRVHRN-AEMGQRIGNMLIESDQNHDGRYILLSNIYV 353
            D V W  ++     + N  E  +  G +  +  + +D  ++L+ N+Y 
Sbjct: 270 RDVVTWNIVITLYVQNENFGEAVRLFGRLQQDGVKANDITFVLMLNVYT 318



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 82/354 (23%), Positives = 142/354 (40%), Gaps = 45/354 (12%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V    F  +  V   LIQ Y+ CG V +A+ VF+  +  DV +W  MI  Y + G+    
Sbjct: 30  VRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVFEILERKDVFAWTRMIGIYCQQGDYDRA 89

Query: 62  LKLF------DKMPQRNDVSWNSILGGLV------------------------------- 84
           L +F      D MP +  V++ +IL                                   
Sbjct: 90  LGMFYQMQEEDVMPTK--VTYVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALI 147

Query: 85  ----RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
               + GSV  A   F ++  R +VSW  +I+   Q+ +   A  L+R MQ   + PN  
Sbjct: 148 NMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKI 207

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
            L ++ +A      L  G +VY  +    ++ D  +  + ++M+   G +  A ++F   
Sbjct: 208 TLYTVFNAYGDPNYLSEGKFVYGLVSSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDM 267

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
            D+DV  +   I     N +  EA  LF  ++  G+  + I+++ +L+  + L  + KG 
Sbjct: 268 VDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDGVKANDITFVLMLNVYTSLTSLAKG- 326

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTL 314
              H +    G   +      ++ L GR     +A      M  K D + W  +
Sbjct: 327 KVIHELVKEAGYDRDAVVATALMSLYGRCEAPGQAWKIFVDMGSK-DVITWTVM 379



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 95/186 (51%), Gaps = 2/186 (1%)

Query: 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ 195
           +P++A  V+LL  C+    +D+G  V+ +++ +  + ++++C  LI MYA+CGS+  A Q
Sbjct: 1   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQ 60

Query: 196 VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGW 255
           VF     KDV A+T  I      G    A  +F  M+ + + P  ++Y+A+L+AC+    
Sbjct: 61  VFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTES 120

Query: 256 VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
           ++ G    H      G + ++     ++++  + G +  A +    +  + D V W  ++
Sbjct: 121 LKDGM-EIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHR-DVVSWTAMI 178

Query: 316 GACRVH 321
            AC  H
Sbjct: 179 AACVQH 184



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 84/159 (52%), Gaps = 15/159 (9%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++N F  ++ V+ +LI  Y  CG++ +A  VF++    D++ WNSM+  Y ++G   E 
Sbjct: 434 IIENRFRMEMVVETALINMYGKCGKMAEAMSVFEKMAKRDILVWNSMLGAYAQHGYYDET 493

Query: 62  LKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQM-------PKRSLVSWVVL 110
           L+LF++M     + + VS+ S+L  L   GSV D  + F  M       P   L   VV 
Sbjct: 494 LQLFNQMQLDGVKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVD 553

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
           + G A  GR +EA+ +  ++      P+  + ++LL AC
Sbjct: 554 LLGRA--GRIQEAVDIVLKLSG--CLPDGILWMTLLGAC 588



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 97/236 (41%), Gaps = 40/236 (16%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V +  +  D  V  +L+  Y  C     A  +F +    DV++W  M   Y +NG   E
Sbjct: 332 LVKEAGYDRDAVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKE 391

Query: 61  GLKLFDKMPQRNDVSWNSILGGLV----------------------RF------------ 86
            L+LF +M        ++ L  ++                      RF            
Sbjct: 392 ALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENRFRMEMVVETALIN 451

Query: 87  -----GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
                G + +A  VF +M KR ++ W  ++  +AQ+G   E L LF +MQ   ++ ++  
Sbjct: 452 MYGKCGKMAEAMSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGVKADAVS 511

Query: 142 LVSLLSACAQLGALDYG-NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
            VS+LSA +  G++  G  +  + +Q   I     L   ++D+  + G I  A+ +
Sbjct: 512 FVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQEAVDI 567


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/549 (37%), Positives = 319/549 (58%), Gaps = 40/549 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGE---- 57
           V++  F   V V  +L+  YS CG V  AR +FD  D   VVSWNSMI+GYV++G+    
Sbjct: 157 VLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGA 216

Query: 58  -------ILEGL---------------------------KLFDKMPQRNDVS-WNSILGG 82
                  + EG+                           KL D++   +DVS  NS++  
Sbjct: 217 MLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISM 276

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             +   VD A  +F  +  ++LVSW  +I G+AQNG   EAL  F EMQS +++P+S  +
Sbjct: 277 YSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTM 336

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           VS++ A A+L       W++  + ++ +  +  +  AL+DMYAKCG+I  A ++F     
Sbjct: 337 VSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNA 396

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           + V  + + I G   +G    + ELF+ MK   I P+ I+++  LSACSH G VE+G  +
Sbjct: 397 RHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCF 456

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F SM   +GI+P +DHY  MVDLLGRAG L +A +FI  MP+KP   ++G +LGAC++H+
Sbjct: 457 FESMKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKPGITVYGAMLGACKIHK 516

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           N ++G++    + + + +  G ++LL+NIY          +VR  M K  +++ PGCSL+
Sbjct: 517 NVDLGEKAAFEIFKLNPDDGGYHVLLANIYATASMWGKVAKVRTIMEKSGLQKTPGCSLV 576

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E+   VH F +G  SH ++++IY + E +V +I+  GY  +T S+  D+E++ K  ++  
Sbjct: 577 EIGNEVHSFYSGTTSHPQSKKIYSYLETLVDEIRAAGYVPDTNSI-HDVEDDVKVQLLNT 635

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSEKLA+AFGL+ T  G+ I I KN+R+C DCH+A K +S V  R+I +RD   +H F+D
Sbjct: 636 HSEKLAIAFGLLNTSTGTPIHIRKNLRVCGDCHNATKYISLVTGREIIVRDMHRFHLFKD 695

Query: 503 GSCSCLEYW 511
           G CSC +YW
Sbjct: 696 GVCSCGDYW 704



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 168/359 (46%), Gaps = 41/359 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+ + F++++F    ++  Y+ C ++ DA  +FD   + D+V WN+MI+GY +NG     
Sbjct: 56  VITSGFSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVA 115

Query: 62  LKLFDKMPQR----NDVSWNSILGGLV--------------------------------- 84
           L L  +M +     + ++  SIL  +                                  
Sbjct: 116 LMLVLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDM 175

Query: 85  --RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + GSV  A  +F+ M  R++VSW  +I G+ Q+G  + A+ +F++M    ++P +  +
Sbjct: 176 YSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTV 235

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           +  L ACA LG L+ G +V+  + +  +  D  +  +LI MY+KC  +D+A  +F +  +
Sbjct: 236 MGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRN 295

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           K + ++ + I G A NG   EA   F  M+S+ I PDS + ++V+ A + L  + +   +
Sbjct: 296 KTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELS-IPRQAKW 354

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            H +     +   +     +VD+  + G +  A      M  +   + W  ++     H
Sbjct: 355 IHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNAR-HVITWNAMIDGYGTH 412



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 80/167 (47%), Gaps = 12/167 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V++     +VFV  +L+  Y+ CG +  AR +FD  +   V++WN+MI+GY  +G    
Sbjct: 358 LVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKT 417

Query: 61  GLKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPK-----RSLVSWVVLI 111
            ++LF +M     + ND+++   L      G V++    F  M K      ++  +  ++
Sbjct: 418 SVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMV 477

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
               + GR  +A      +Q + ++P   +  ++L AC     +D G
Sbjct: 478 DLLGRAGRLNQAWDF---IQKMPIKPGITVYGAMLGACKIHKNVDLG 521



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 94/226 (41%), Gaps = 7/226 (3%)

Query: 110 LISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC 169
           ++ G+A++     AL+ F  M+   + P       LL  C     L  G  ++  +    
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFE 229
              +      +++MYAKC  I+ A  +F    ++D+  + + I G A NG +  A  L  
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120

Query: 230 NMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRA 289
            M  +G  PDSI+ +++L A +    +  G    H      G +  ++    +VD+  + 
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLLRIGM-AVHGYVLRAGFESLVNVSTALVDMYSKC 179

Query: 290 GLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLI 335
           G +  A      M  +   V W +++       +AE     G MLI
Sbjct: 180 GSVSIARVIFDGMDHRT-VVSWNSMIDGYVQSGDAE-----GAMLI 219


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/550 (36%), Positives = 316/550 (57%), Gaps = 40/550 (7%)

Query: 2    VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
             VK     D+    +L+  Y+ CG    A   F+     D+V+WNS+INGY + G+    
Sbjct: 456  TVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNA 515

Query: 62   LKLFDKM------PQR-------------NDVSWNSILGGLV------------------ 84
            + +F K+      P               ND+   + + GL+                  
Sbjct: 516  IDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDM 575

Query: 85   --RFGSVDDACRVFNQMP-KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + GS+  A  +FN+    +  V+W V+I+ + QNG  KEA++ F +M+  +  PNS  
Sbjct: 576  YAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVT 635

Query: 142  LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
             VS+L A A L A   G   ++ I +     ++++  +LIDMYAKCG +  + ++F+   
Sbjct: 636  FVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMD 695

Query: 202  DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
             KD  ++ + + G A++GH   A  LF  M+   +  DS+S+++VLSAC H G VE+G  
Sbjct: 696  HKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRK 755

Query: 262  YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
             FHSM D + IKP+L+HYACMVDLLGRAGL +E   FI  MP++PD  +WG LLG+CR+H
Sbjct: 756  IFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMH 815

Query: 322  RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
             N ++G+   + L++ +  +   +++LS+IY ++ +  +A + R  M    +K+ PGCS 
Sbjct: 816  SNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSW 875

Query: 382  IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIG 441
            +EL   VH F  GD+SH + + ++  W  +++K++  GY  +   V+ ++EEE+KE  + 
Sbjct: 876  VELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLY 935

Query: 442  YHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
             HSE+LA+ F L+ T PGS I+IVKN+R+C+DCH+  K +SK+  R+I +RD   +HHFE
Sbjct: 936  SHSERLAITFALLNTPPGSTIQIVKNLRVCADCHTTTKFISKITTRRIIVRDATRFHHFE 995

Query: 502  DGSCSCLEYW 511
            DG CSC +YW
Sbjct: 996  DGICSCNDYW 1005



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 159/344 (46%), Gaps = 40/344 (11%)

Query: 13  VKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP--- 69
           V N LI  YS CG V  AR VFD+  D D VSW +M+ GY  NG  +E L+LFDKM    
Sbjct: 265 VSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGN 324

Query: 70  ---------------------------------QRND---VSWNSILGGLVRFGSVDDAC 93
                                            QR D   +    ++    + G  + A 
Sbjct: 325 VRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAK 384

Query: 94  RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153
           ++F  +  R LV+W  +I+   Q G P+EAL+LF+EMQ+  ++PN   L+S+L ACA L 
Sbjct: 385 QLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLS 444

Query: 154 ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIF 213
            L  G  ++ +  K  +  D     AL+ MYAKCG    A+  F+    +D+  + S I 
Sbjct: 445 LLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLIN 504

Query: 214 GLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIK 273
           G A  G    A ++F  ++   I+PD+ + + V+ AC+ L  +++G    H +    G +
Sbjct: 505 GYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQG-TCIHGLIVKLGFE 563

Query: 274 PELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
            +      ++D+  + G L  AE          D V W  ++ A
Sbjct: 564 SDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAA 607



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 158/343 (46%), Gaps = 39/343 (11%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DVF+   L+  YS  G ++ AR VFD+    DVV+WN+MI G  ++ +  E +  F  M 
Sbjct: 163 DVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQ 222

Query: 70  ----QRNDVSWNSILGGLVRF---------------------------------GSVDDA 92
               + + VS  ++  G+ +                                  G VD A
Sbjct: 223 LVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNGLIDLYSKCGDVDVA 282

Query: 93  CRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQL 152
            RVF+QM  +  VSW  +++G+A NG   E L LF +M+  ++  N    VS   A A+ 
Sbjct: 283 RRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAET 342

Query: 153 GALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAI 212
             L+ G  ++    ++ I  D ++   L+ MYAKCG  + A Q+F     +D+ A+++ I
Sbjct: 343 IDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAII 402

Query: 213 FGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGI 272
             L   G+  EA  LF+ M+++ + P+ ++ +++L AC+ L  ++ G    H       +
Sbjct: 403 AALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLG-KSIHCFTVKADM 461

Query: 273 KPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
             +L     +V +  + G    A      M  + D V W +L+
Sbjct: 462 DSDLSTGTALVSMYAKCGFFTAALTTFNRMSSR-DIVTWNSLI 503



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 100/398 (25%), Positives = 176/398 (44%), Gaps = 74/398 (18%)

Query: 17  LIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLF----DKMPQRN 72
           LI  YS+  +   AR VFD + +   + WNSMI  Y R+ +  E L+++    +K  + +
Sbjct: 69  LINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPD 128

Query: 73  DVSWNSIL-------------------------------GGLV----RFGSVDDACRVFN 97
             ++  +L                                GLV    + G +  A  VF+
Sbjct: 129 KYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFD 188

Query: 98  QMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDY 157
           +MPKR +V+W  +I+G +Q+  P EA+  FR MQ + +EP+S  L++L     +L  ++ 
Sbjct: 189 KMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIEL 248

Query: 158 GNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAM 217
              ++ Y+ ++     S +   LID+Y+KCG +D+A +VF    D+D  ++ + + G A 
Sbjct: 249 CRSIHGYVFRR--DFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAH 306

Query: 218 NGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMF------DVHG 271
           NG  +E  ELF+ MK   +  + +S ++   A +    +EKG              D+  
Sbjct: 307 NGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILV 366

Query: 272 IKPELDHYA------------------------CMVDLLGRAGLLEEAENFIASM---PM 304
             P +  YA                         ++  L + G  EEA +    M    M
Sbjct: 367 ATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKM 426

Query: 305 KPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD 342
           KP+ V   ++L AC      ++G+ I    +++D + D
Sbjct: 427 KPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSD 464



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 108/232 (46%), Gaps = 41/232 (17%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESD-DLDVVSWNSMINGYVRNGEIL 59
           ++VK  F  D  VKN+LI  Y+ CG +  A ++F+++D   D V+WN +I  Y++NG   
Sbjct: 556 LIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAK 615

Query: 60  EGLKLFDKMP----QRNDVSWNSILGGLV-----RFGSVDDAC----------------- 93
           E +  F +M       N V++ S+L         R G    AC                 
Sbjct: 616 EAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLI 675

Query: 94  -------------RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
                        ++FN+M  +  VSW  ++SG+A +G    A+ALF  MQ   ++ +S 
Sbjct: 676 DMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSV 735

Query: 141 ILVSLLSACAQLGALDYGNWVY-SYIQKKCIKLDSILCAALIDMYAKCGSID 191
             VS+LSAC   G ++ G  ++ S   K  IK D    A ++D+  + G  D
Sbjct: 736 SFVSVLSACRHXGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFD 787


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 201/541 (37%), Positives = 310/541 (57%), Gaps = 39/541 (7%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM- 68
           D+F    L+  YS C  + DAR  +D     D+++WN++I+GY + G+ L+ + LF KM 
Sbjct: 318 DLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMF 377

Query: 69  ---------------------------PQRNDVSW-----------NSILGGLVRFGSVD 90
                                       Q + +S            NS+L    +   +D
Sbjct: 378 SEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHID 437

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           +A ++F +     LV++  +I+ ++Q G  +EAL L+ +MQ  D++P+  I  SLL+ACA
Sbjct: 438 EASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACA 497

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
            L A + G  ++ +  K     D     +L++MYAKCGSI+ A + F    ++ + ++++
Sbjct: 498 NLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSA 557

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I G A +GH  EA  LF  M   G+ P+ I+ ++VL AC+H G V +G  YF  M  + 
Sbjct: 558 MIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMF 617

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
           GIKP  +HYACM+DLLGR+G L EA   + S+P + D  +WG LLGA R+H+N E+GQ+ 
Sbjct: 618 GIKPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAARIHKNIELGQKA 677

Query: 331 GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHE 390
             ML + +    G ++LL+NIY      EN  +VRK M+  K+K+ PG S IE+   V+ 
Sbjct: 678 AKMLFDLEPEKSGTHVLLANIYASAGMWENVAKVRKFMKDSKVKKEPGMSWIEIKDKVYT 737

Query: 391 FLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALA 450
           F+ GDRSH ++ EIY   +++   +   GY+      + ++++ EKE ++ +HSEKLA+A
Sbjct: 738 FIVGDRSHSRSDEIYAKLDQLGDLLSKAGYSSIVEIDIHNVDKSEKEKLLYHHSEKLAVA 797

Query: 451 FGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEY 510
           FGLI T PG  IR+ KN+RIC DCH+  K V K+  R+I +RD   +HHF+DGSCSC +Y
Sbjct: 798 FGLIATPPGGPIRVKKNLRICVDCHTFFKFVCKIVSREIIVRDINRFHHFKDGSCSCGDY 857

Query: 511 W 511
           W
Sbjct: 858 W 858



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 109/367 (29%), Positives = 180/367 (49%), Gaps = 48/367 (13%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K  F+ D  ++N L+  YS C R   AR + DES +LDVVSW+S+++GYV+NG + E 
Sbjct: 7   LIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGFVEEA 66

Query: 62  LKLFDKM----PQRNDVSWNSIL--------------------------GGLV------- 84
           L +F++M     + N+ ++ S+L                           G V       
Sbjct: 67  LLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVM 126

Query: 85  --RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G +DD+ R+F  + +R++VSW  L S + Q+    EA+ LF+EM    + PN   +
Sbjct: 127 YAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSI 186

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
             +L+ACA L   D G  ++  + K  + LD     AL+DMY+K G I+ A+ VF     
Sbjct: 187 SIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAH 246

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
            DV ++ + I G  ++  +  A  L + MK  G  P+  +  + L AC+ +G+ E G   
Sbjct: 247 PDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQL 306

Query: 263 FHSM--FDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA--- 317
             S+   D H    +L     +VD+  +  ++++A     SMP K D + W  L+     
Sbjct: 307 HSSLIKMDAH---SDLFAAVGLVDMYSKCEMMDDARRAYDSMP-KKDIIAWNALISGYSQ 362

Query: 318 CRVHRNA 324
           C  H +A
Sbjct: 363 CGDHLDA 369



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 103/402 (25%), Positives = 165/402 (41%), Gaps = 72/402 (17%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           M V   F  D FV N+L+  Y+ CG + D+R +F    + +VVSWN++ + YV++    E
Sbjct: 107 MAVVTGFESDGFVANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGE 166

Query: 61  GLKLFDKMP---------------------QRNDV------------------SWNSILG 81
            + LF +M                      Q  D+                  S N+++ 
Sbjct: 167 AVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVD 226

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G ++ A  VF  +    +VSW  +I+G   +     AL L  EM+     PN   
Sbjct: 227 MYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFT 286

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           L S L ACA +G  + G  ++S + K     D      L+DMY+KC  +D A + + S  
Sbjct: 287 LSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMP 346

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVE---- 257
            KD+ A+ + I G +  G  ++A  LF  M S+ I  +  +   VL + + L  ++    
Sbjct: 347 KKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQ 406

Query: 258 -----------KGFYYFHSMFDVHGIKPELDH---------------YACMVDLLGRAGL 291
                        FY  +S+ D +G    +D                Y  M+    + G 
Sbjct: 407 IHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGD 466

Query: 292 LEEAENFIASMP---MKPDNVIWGTLLGACRVHRNAEMGQRI 330
            EEA      M    +KPD  I  +LL AC      E G+++
Sbjct: 467 GEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQL 508



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 79/155 (50%), Gaps = 12/155 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +K  F  D+F  NSL+  Y+ CG + DA   F E  +  +VSW++MI GY ++G   E L
Sbjct: 513 IKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEAL 572

Query: 63  KLFDKMPQ----RNDVSWNSILGGLVRFGSVDDACRVFNQMP-----KRSLVSWVVLISG 113
           +LF++M +     N ++  S+L      G V++  + F +M      K +   +  +I  
Sbjct: 573 RLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYACMIDL 632

Query: 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148
             ++G+  EA+ L   + S+  E +  +  +LL A
Sbjct: 633 LGRSGKLNEAVEL---VNSIPFEADGFVWGALLGA 664



 Score = 43.1 bits (100), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 72/161 (44%), Gaps = 3/161 (1%)

Query: 161 VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGH 220
           +++++ K     D  L   L+ +Y+KC     A ++     + DV +++S + G   NG 
Sbjct: 3   LHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGF 62

Query: 221 SIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA 280
             EA  +F  M   G+  +  ++ +VL ACS    +  G    H M  V G + +     
Sbjct: 63  VEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMG-RKVHGMAVVTGFESDGFVAN 121

Query: 281 CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            +V +  + GLL+++      +  +  NV+    L +C V 
Sbjct: 122 TLVVMYAKCGLLDDSRRLFGGIVER--NVVSWNALFSCYVQ 160


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 193/455 (42%), Positives = 286/455 (62%), Gaps = 40/455 (8%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +K   A DV+V N+L++ Y+VC  +R AR VFD S   D+VSW +MI GYV+ G   EG+
Sbjct: 152 IKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGV 211

Query: 63  KLFDKMPQRN---------------------------------------DV-SWNSILGG 82
            LF +M   N                                       DV   N+++  
Sbjct: 212 GLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDM 271

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
            ++ G  + A +VF +MP +++VSW  +ISG AQ G+ KE+L +FR+MQ L ++P+   L
Sbjct: 272 YLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTL 331

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           V++L++CA LG L+ G WV++Y+ +  I+ D  +  AL+DMYAKCGSID A  VF +   
Sbjct: 332 VAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNR 391

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           KDV +YT+ I GLAM+G   +A +LF  M   GI PD ++++ VL+ACSH+G VE+G  Y
Sbjct: 392 KDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKY 451

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F  M  ++ ++P+L+HY CMVDLLGRAGL+ EAE FI +MP++PD  + G LLGAC++H 
Sbjct: 452 FEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACKIHG 511

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
             E+G+ +   + + +   DG Y+L+SNIY    +  +A ++RKTM++R +++ PGCS I
Sbjct: 512 KVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERNLEKTPGCSSI 571

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKN 417
           ELDGV+HEF  GD+SH K +EIY+  +EI+  +KN
Sbjct: 572 ELDGVIHEFQKGDKSHPKIKEIYKLLDEIMSHLKN 606



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 104/225 (46%), Gaps = 2/225 (0%)

Query: 92  ACRVFNQMPKRSLVSWVVLISGFA-QNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           A  +  Q+   +L  +  +I G A  N    E L ++++M S  + P++  +  +L ACA
Sbjct: 77  ALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACA 136

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
           +  A+  G  V+    K  +  D  +   L+ MYA C  I  A +VF +   +D+ ++T+
Sbjct: 137 ESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTT 196

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I G    G + E   LF  M  + +  D ++ + VLS+C+ LG +  G      +    
Sbjct: 197 MIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNS 256

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
            +  ++     +VD+  + G    A      MP+K + V W +++
Sbjct: 257 NVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVK-NVVSWNSMI 300


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/578 (37%), Positives = 319/578 (55%), Gaps = 76/578 (13%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D FV+   +  Y+ CGR+  AR VFDE    DVV+WN+MI  Y R G + E  KLF++M 
Sbjct: 145 DPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMK 204

Query: 70  Q----------------------------------RNDVSWNS-ILGGLVRF----GSVD 90
                                               NDV  ++ +L  LV      G +D
Sbjct: 205 DSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMD 264

Query: 91  DACRVFNQMPKRSL-------------------------------VSWVVLISGFAQNGR 119
            A   F +M  R+L                               V W  +IS + ++  
Sbjct: 265 MAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDY 324

Query: 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
           P+EAL +F EM    ++P+   + S++SACA LG LD   WV+S I    ++ +  +  A
Sbjct: 325 PQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNA 384

Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
           LI+MYAKCG +D    VF     ++V +++S I  L+M+G + +A  LF  MK + + P+
Sbjct: 385 LINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPN 444

Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI 299
            ++++ VL  CSH G VE+G   F SM D + I P+L+HY CMVDL GRA LL EA   I
Sbjct: 445 EVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVI 504

Query: 300 ASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGE 359
            SMP+  + VIWG+L+ ACR+H   E+G+     ++E + +HDG  +L+SNIY    + E
Sbjct: 505 ESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWE 564

Query: 360 NAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYG 419
           +   +R+ M ++ + +  G S I+ +G  HEFL GD+ H+++ EIY   +E+V K+K  G
Sbjct: 565 DVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAG 624

Query: 420 YNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGS------VIRIVKNIRICSD 473
           Y  +  SV+ D+EEEEK+ ++ +HSEKLAL FGL+  +         VIRIVKN+R+C D
Sbjct: 625 YVPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNEEKEEEKDSCGVIRIVKNLRVCED 684

Query: 474 CHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           CH   KLVSKV++R+I +RDR  +H +++G CSC +YW
Sbjct: 685 CHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRDYW 722



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 86/172 (50%), Gaps = 16/172 (9%)

Query: 5   NSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKL 64
           N    ++ + N+LI  Y+ CG +   R VF++    +VVSW+SMIN    +GE  + L L
Sbjct: 373 NGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSL 432

Query: 65  FDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQM-------PKRSLVSWVVLISG 113
           F +M Q     N+V++  +L G    G V++  ++F  M       PK  L  +  ++  
Sbjct: 433 FARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPK--LEHYGCMVDL 490

Query: 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           F +    +EAL +   ++S+ +  N  I  SL+SAC   G L+ G +    I
Sbjct: 491 FGRANLLREALEV---IESMPVASNVVIWGSLMSACRIHGELELGKFAAKRI 539



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 92  ACRVFNQMPKRS-LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           A  VF+ +P     + +   +   +++  P+  +  ++ ++ +    +    + +L A +
Sbjct: 63  ALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVS 122

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
           ++ AL  G  ++    K     D  +    +DMYA CG I+ A  VF     +DV  + +
Sbjct: 123 KVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNT 182

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVE--KGFYYFHSMFD 268
            I      G   EAF+LFE MK   + PD +    ++SAC   G +   +  Y F    D
Sbjct: 183 MIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIEND 242

Query: 269 VHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMK 305
           V   + +      +V +   AG ++ A  F   M ++
Sbjct: 243 V---RMDTHLLTALVTMYAGAGCMDMAREFFRKMSVR 276


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 201/548 (36%), Positives = 320/548 (58%), Gaps = 40/548 (7%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           K+     V +  +L+  Y+ CG +  AR VFD     + V+W+++I G+V    + +   
Sbjct: 151 KSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFL 210

Query: 64  LFDKMPQR----------------------------------------NDVSWNSILGGL 83
           LF  M  +                                        +  + NS+L   
Sbjct: 211 LFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMY 270

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
            + G +D A  +F++M  +  VS+  L+SG+ QNGR +EA  +F++MQ+ ++EP++A +V
Sbjct: 271 AKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMV 330

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           SL+ AC+ L AL +G   +  +  + +  ++ +C ALIDMYAKCG IDL+ QVF+    +
Sbjct: 331 SLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSR 390

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           D+ ++ + I G  ++G   EA  LF  M + G  PD +++I +LSACSH G V +G ++F
Sbjct: 391 DIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWF 450

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
           H M   +G+ P ++HY CMVDLL R G L+EA  FI SMP++ D  +W  LLGACRV++N
Sbjct: 451 HVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKN 510

Query: 324 AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE 383
            ++G+++  M+ E      G ++LLSNIY    + + A EVR   + +  K++PGCS IE
Sbjct: 511 IDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIE 570

Query: 384 LDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYH 443
           ++G +H F+ GD+SH ++ EIY+  + I+  IK  GY  +T  V+ D+EEEEKE  +  H
Sbjct: 571 INGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICH 630

Query: 444 SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
           SEKLA+A+G++       I + KN+R+C DCH+ +K +S V +R I +RD   +HHF++G
Sbjct: 631 SEKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKNG 690

Query: 504 SCSCLEYW 511
            CSC ++W
Sbjct: 691 QCSCGDFW 698



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/366 (26%), Positives = 162/366 (44%), Gaps = 58/366 (15%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNG------------- 56
           D+FV  +L+  Y  C  + DA  +F      D+V+WN+M+ GY  +G             
Sbjct: 44  DLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQ 103

Query: 57  -----------EILEGLKLFDKM-------------------PQRNDVS--------WNS 78
                       ++  L L  +                    P RN  S          +
Sbjct: 104 MQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTA 163

Query: 79  ILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD---L 135
           +L    + GS+  A RVF+ MP R+ V+W  LI GF    R  +A  LF+ M +     L
Sbjct: 164 LLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFL 223

Query: 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ 195
            P S  + S L ACA L  L  G  +++ + K  +  D     +L+ MYAK G ID A+ 
Sbjct: 224 SPTS--IASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIA 281

Query: 196 VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGW 255
           +F     KD  +Y++ + G   NG + EAF +F+ M++  + PD+ + ++++ ACSHL  
Sbjct: 282 LFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAA 341

Query: 256 VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
           ++ G    H    + G+  E      ++D+  + G ++ +      MP + D V W T++
Sbjct: 342 LQHG-RCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSR-DIVSWNTMI 399

Query: 316 GACRVH 321
               +H
Sbjct: 400 AGYGIH 405



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 111/241 (46%), Gaps = 44/241 (18%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++ K+    D+   NSL+  Y+  G +  A  +FDE    D VS++++++GYV+NG   E
Sbjct: 250 LLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEE 309

Query: 61  GLKLFDKMPQ-----------------------------------RNDVSWNSILGGLV- 84
              +F KM                                     R   S  SI   L+ 
Sbjct: 310 AFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALID 369

Query: 85  ---RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G +D + +VFN MP R +VSW  +I+G+  +G  KEA ALF EM +L   P+   
Sbjct: 370 MYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVT 429

Query: 142 LVSLLSACAQLGALDYG-NW--VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH 198
            + LLSAC+  G +  G +W  V  +      +++  +C  ++D+ ++ G +D A +   
Sbjct: 430 FICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYIC--MVDLLSRGGFLDEAYEFIQ 487

Query: 199 S 199
           S
Sbjct: 488 S 488



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 83/177 (46%), Gaps = 16/177 (9%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+    A +  + N+LI  Y+ CGR+  +R VF+     D+VSWN+MI GY  +G   E 
Sbjct: 352 VIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEA 411

Query: 62  LKLFDKMPQ----RNDVSWNSILGGLVRFGSVDDACRVFNQM-------PKRSLVSWVVL 110
             LF +M       + V++  +L      G V +    F+ M       P+  +  ++ +
Sbjct: 412 TALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPR--MEHYICM 469

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK 167
           +   ++ G   EA   +  +QS+ L  +  + V+LL AC     +D G  V   IQ+
Sbjct: 470 VDLLSRGGFLDEA---YEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQE 523



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 85/194 (43%), Gaps = 14/194 (7%)

Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
           + PN+      L AC+ L     G  ++ +     ++ D  +  AL+DMY KC  +  A 
Sbjct: 6   VAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAA 65

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNG--HSIEAFELFENMKSKGISPDSISYIAVLSACSH 252
            +F +   +D+ A+ + + G A +G  H   A  L   M+   + P++ + +A+L   + 
Sbjct: 66  HIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQ 125

Query: 253 LGWVEKGFYYFHSMFDVHGIKPELDHYACMVD--LLGRA--------GLLEEAENFIASM 302
            G + +G    H+      + P  +  + + D  LLG A        G L  A     +M
Sbjct: 126 QGALAQG-TSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAM 184

Query: 303 PMKPDNVIWGTLLG 316
           P + + V W  L+G
Sbjct: 185 PAR-NEVTWSALIG 197


>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
 gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
          Length = 695

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/508 (39%), Positives = 316/508 (62%), Gaps = 7/508 (1%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           +VFV N+L   Y+ CG +  AR +FD     +VV+WN MI+GY++N +  + + LF +M 
Sbjct: 189 NVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISGYLKNRQPEKCIDLFHEMQ 248

Query: 70  QRN----DVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALA 125
             N     V+ +S+LG  ++ G +D+A +VF ++ ++  V W ++I G AQNG+ ++AL 
Sbjct: 249 VSNLKPDQVTASSVLGAYIQAGYIDEARKVFGEIREKDEVCWTIMIVGCAQNGKEEDALL 308

Query: 126 LFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYA 185
           LF EM   +  P+   + S++S+CA+L +L +G  V+       +  D ++ +AL+DMY 
Sbjct: 309 LFSEMLLENARPDGYTISSVVSSCAKLASLYHGQVVHGKAFLMGVNDDLLVSSALVDMYC 368

Query: 186 KCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIA 245
           KCG    A  +F +   ++V ++ S I G A+NG  +EA  L+ENM  + + PDS++++ 
Sbjct: 369 KCGVTRDAWTIFSTMQTRNVVSWNSMIGGYALNGQDLEALSLYENMLEENLKPDSVTFVG 428

Query: 246 VLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMK 305
           VLSAC H G VE+G  YF SM D HG++P  DHYACMV+L GR+G +++A + I+SM  +
Sbjct: 429 VLSACVHAGLVEEGKEYFCSMSDQHGLEPTPDHYACMVNLFGRSGHMDKAVDLISSMSQE 488

Query: 306 PDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVR 365
           P+++IW T+L  C +  + + G+     LIE +  +   YI+LSN+Y    + ++   +R
Sbjct: 489 PNSLIWTTVLSVCVMKGDIKHGEMAARCLIELNPFNAVPYIMLSNMYAARGRWKDVASIR 548

Query: 366 KTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETR 425
             M+ + +K+    S IE+D  VH+F+A DR+H   + I+     +++K++  G++  T 
Sbjct: 549 SLMKSKHVKKFSAYSWIEIDNEVHKFVADDRTHPDAKIIHVQLNRLIRKLQEAGFSPNTN 608

Query: 426 SVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSV--IRIVKNIRICSDCHSAMKLVSK 483
            V+ D  E+EK   I YHSEKLALA+GLI  KP  V  IRI+KNIR C+DCH  MK VS 
Sbjct: 609 LVLHDFGEDEKLESINYHSEKLALAYGLI-KKPHGVTPIRIIKNIRTCADCHIFMKFVSN 667

Query: 484 VFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           + +R + +RD   +HHF +G CSC +YW
Sbjct: 668 ITRRPVILRDSNRFHHFVEGKCSCKDYW 695



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 120/223 (53%)

Query: 41  DVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMP 100
           D    N ++N Y ++GEI    KLFD+M QR++ SWN++L    + G V+D   +F+ MP
Sbjct: 57  DTFIHNRLLNLYAKSGEISHARKLFDEMTQRDNFSWNAMLSLYAKSGLVEDLRVIFDNMP 116

Query: 101 KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNW 160
            R  VS+  +ISGFA NGR   AL +F  MQ   L+P     VS+L+AC QL  L  G  
Sbjct: 117 SRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTHVSVLNACTQLLDLRRGKQ 176

Query: 161 VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGH 220
           ++  I    +  +  +C AL D+YA+CG ID A ++F     ++V  +   I G   N  
Sbjct: 177 IHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISGYLKNRQ 236

Query: 221 SIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
             +  +LF  M+   + PD ++  +VL A    G++++    F
Sbjct: 237 PEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQAGYIDEARKVF 279


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 193/516 (37%), Positives = 301/516 (58%), Gaps = 31/516 (6%)

Query: 27  VRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLV-- 84
           V+ A   F++    D+ SWN++I+G+ +NG++ +   LF  MP++N VSW++++ G V  
Sbjct: 152 VKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVSWSAMISGYVEH 211

Query: 85  -----------------------------RFGSVDDACRVFNQMPKRSLVSWVVLISGFA 115
                                        +FG V+ A R+F +M  ++LV+W  +I+G+ 
Sbjct: 212 GDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYV 271

Query: 116 QNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI 175
           +N R ++ L +F+ M    + PN   L S+L  C+ L AL  G  ++  + K  +  D+ 
Sbjct: 272 ENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTT 331

Query: 176 LCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG 235
            C +LI MY KCG +D A ++F     KDV  + + I G A +G   +A  LF+ M++  
Sbjct: 332 ACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWNAMISGYAQHGAGRKALHLFDKMRNGT 391

Query: 236 ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA 295
           + PD I+++AV+ AC+H G+V+ G  YF SM    GI+ +  HY C++DLLGRAG L+EA
Sbjct: 392 MKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEA 451

Query: 296 ENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVET 355
            + I  MP  P   I+GTLLGACR+H+N ++ +     L+  D      Y+ L+NIY  T
Sbjct: 452 VSLIKEMPFTPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATGYVQLANIYAAT 511

Query: 356 LKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKI 415
            K +   +VRK M++  + + PG S IE+  V HEF + DR H +   I++   E+  K+
Sbjct: 512 NKWDQVAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLHPELTSIHKKLNELDGKM 571

Query: 416 KNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCH 475
           K  GY  +    + D+EEE KE ++ +HSEKLA+AFGL+ T PG+ IR+ KN+R+C DCH
Sbjct: 572 KLAGYVPDLEFALHDVEEEHKEKLLLWHSEKLAIAFGLMKTAPGTPIRVFKNLRVCGDCH 631

Query: 476 SAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            A+K +S + KR+I +RD   +HHF +G CSC +YW
Sbjct: 632 RAIKFISAIEKREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 153/315 (48%), Gaps = 11/315 (3%)

Query: 8   AYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVR-NGEILEGLKLFD 66
           A DV   N  I  +     +  AR VF++      V+WN+M++GY +  G++ E  +LFD
Sbjct: 70  ASDVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFD 129

Query: 67  KMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALAL 126
           K+P+ + VS+N +L   +R   V  A   FN+MP + + SW  LISGFAQNG+ ++A  L
Sbjct: 130 KIPEPDSVSYNIMLVCYLRSYGVKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDL 189

Query: 127 FREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAK 186
           F  M     E N     +++S   + G L+    +Y  +  K + +++    A++  Y K
Sbjct: 190 FSVMP----EKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVET----AMLTGYMK 241

Query: 187 CGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAV 246
            G ++LA ++F     K++  + S I G   N  + +  ++F+ M    + P+ +S  +V
Sbjct: 242 FGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSV 301

Query: 247 LSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKP 306
           L  CS+L  +  G    H +     +  +      ++ +  + G L+ A      MP K 
Sbjct: 302 LLGCSNLSALPLG-RQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRK- 359

Query: 307 DNVIWGTLLGACRVH 321
           D + W  ++     H
Sbjct: 360 DVITWNAMISGYAQH 374



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 113/233 (48%), Gaps = 40/233 (17%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           KN     V V+ +++  Y   G+V  A  +F      ++V+WNSMI GYV N    +GLK
Sbjct: 222 KNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLK 281

Query: 64  LFDKMPQR----NDVSWNSILGG-----------------------------------LV 84
           +F  M +     N +S +S+L G                                     
Sbjct: 282 VFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYC 341

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
           + G +D A ++F +MP++ +++W  +ISG+AQ+G  ++AL LF +M++  ++P+    V+
Sbjct: 342 KCGDLDSAWKLFLEMPRKDVITWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVA 401

Query: 145 LLSACAQLGALDYGNWVYSYIQKKC-IKLDSILCAALIDMYAKCGSIDLAMQV 196
           ++ AC   G +D G   +  ++K+  I+   +    +ID+  + G +D A+ +
Sbjct: 402 VILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSL 454



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 94/210 (44%), Gaps = 23/210 (10%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V K+  + D     SLI  Y  CG +  A  +F E    DV++WN+MI+GY ++G   +
Sbjct: 320 LVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWNAMISGYAQHGAGRK 379

Query: 61  GLKLFDKMPQRND------VSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVV 109
            L LFDKM  RN       +++ +++      G VD   + F  M K        V +  
Sbjct: 380 ALHLFDKM--RNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTC 437

Query: 110 LISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC 169
           +I    + GR  EA++L +EM      P++AI  +LL AC     LD       +  +  
Sbjct: 438 VIDLLGRAGRLDEAVSLIKEMP---FTPHAAIYGTLLGACRIHKNLDLA----EFAARNL 490

Query: 170 IKLDSILCAA---LIDMYAKCGSIDLAMQV 196
           + LD         L ++YA     D   +V
Sbjct: 491 LNLDPTSATGYVQLANIYAATNKWDQVAKV 520


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 201/541 (37%), Positives = 318/541 (58%), Gaps = 39/541 (7%)

Query: 10   DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLF---- 65
            D FV  +LI  YS  G++ +A ++F   DDLD+  WN+M+ GY+   +  + L+LF    
Sbjct: 1040 DSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIH 1099

Query: 66   ------------------------DKMPQ----------RNDVSWNS-ILGGLVRFGSVD 90
                                    D+  Q           +D+  NS IL   ++ G + 
Sbjct: 1100 KSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMV 1159

Query: 91   DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
            +A  VFN +     V+W  +ISG   NG   +AL ++  M+   + P+     +L+ A +
Sbjct: 1160 NAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASS 1219

Query: 151  QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
             + AL+ G  +++ + K     D  +  +L+DMYAKCG+I+ A ++F     ++++ + +
Sbjct: 1220 CVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNA 1279

Query: 211  AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
             + GLA +G++ EA  LF++MKS GI PD +S+I +LSACSH G   + + Y HSM + +
Sbjct: 1280 MLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDY 1339

Query: 271  GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
            GI+PE++HY+C+VD LGRAGL++EA+  I +MP K    I   LLGACR+  + E G+R+
Sbjct: 1340 GIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGKRV 1399

Query: 331  GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHE 390
               L   +      Y+LLSNIY    + ++  + RK M+++ +K+ PG S I++  ++H 
Sbjct: 1400 AARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHL 1459

Query: 391  FLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALA 450
            F+  DRSH +   IY   EE++K I+  GY  +T  V+ D+E+EEKE  + YHSEKLA+A
Sbjct: 1460 FVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIA 1519

Query: 451  FGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEY 510
            +GLI T   + IR++KN+R+C DCH+A+K +SKVF+R+I +RD   +HHF DG CSC +Y
Sbjct: 1520 YGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFRDGVCSCGDY 1579

Query: 511  W 511
            W
Sbjct: 1580 W 1580



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 143/322 (44%), Gaps = 40/322 (12%)

Query: 2    VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
             +K    +DVFV  +L+  YS CGR+RDAR +FD   + DVV WN M+ GYV+ G   E 
Sbjct: 753  AIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEA 812

Query: 62   LKLFDKMPQR----NDVSWNSILGGL-------------------VRFGSVDDACRVFNQ 98
             +LF +  +     ++ S   IL G+                    +    DD   VF  
Sbjct: 813  FQLFSEFHRSGLRPDEFSVQLILNGVSEVNWDEGKWLADQVQAYAAKLSLSDDNPDVFCW 872

Query: 99   MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
              K S   W          G    A+  F  M  L+++ ++  L+ +L+A A    L+ G
Sbjct: 873  NKKLSECLWA---------GDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELG 923

Query: 159  NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
              V+    K  +  D  +  +L++MY+K G    A +VF+     D+ ++ S I   A +
Sbjct: 924  KQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQS 983

Query: 219  GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE--L 276
                E+  LF ++  +G+ PD  +  +VL ACS L               VH +K     
Sbjct: 984  SLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSL----IDGLNISRQIHVHALKTGNIA 1039

Query: 277  DHY--ACMVDLLGRAGLLEEAE 296
            D +    ++D+  ++G +EEAE
Sbjct: 1040 DSFVATTLIDVYSKSGKMEEAE 1061



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 158/365 (43%), Gaps = 42/365 (11%)

Query: 1    MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNG---- 56
            + VK+    DV V NSL+  YS  G    AR VF++   LD++SWNSMI+   ++     
Sbjct: 929  IAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEE 988

Query: 57   ------EIL-EGLK---------------LFDKMPQRNDVSWNSILGGLV---------- 84
                  ++L EGLK               L D +     +  +++  G +          
Sbjct: 989  SVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADSFVATTLI 1048

Query: 85   ----RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
                + G +++A  +F       L  W  ++ G+      K+AL LF  +     + +  
Sbjct: 1049 DVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQI 1108

Query: 141  ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
             L +   AC  L  LD G  ++++  K     D  + + ++DMY KCG +  A  VF+  
Sbjct: 1109 TLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYI 1168

Query: 201  GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
               D  A+TS I G   NG+  +A  ++  M+   + PD  ++  ++ A S +  +E+G 
Sbjct: 1169 SAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGR 1228

Query: 261  YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
                ++  +  +       + +VD+  + G +E+A      M ++ +  +W  +L     
Sbjct: 1229 QLHANVIKLDCVSDPFVGTS-LVDMYAKCGNIEDAYRLFKKMNVR-NIALWNAMLVGLAQ 1286

Query: 321  HRNAE 325
            H NAE
Sbjct: 1287 HGNAE 1291



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 128/265 (48%), Gaps = 9/265 (3%)

Query: 77   NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136
            NS++    + G    A  VFN M    L+SW  +IS  AQ+   +E++ LF ++    L+
Sbjct: 943  NSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLK 1002

Query: 137  PNSAILVSLLSACAQL-GALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ 195
            P+   L S+L AC+ L   L+    ++ +  K     DS +   LID+Y+K G ++ A  
Sbjct: 1003 PDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEF 1062

Query: 196  VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGW 255
            +F +  D D++ + + +FG  +     +A ELF  +   G   D I+      AC  L  
Sbjct: 1063 LFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVL 1122

Query: 256  VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAE---NFIASMPMKPDNVIWG 312
            +++G    H+     G   +L   + ++D+  + G +  A    N+I++    PD+V W 
Sbjct: 1123 LDQG-KQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISA----PDDVAWT 1177

Query: 313  TLLGACRVHRNAEMGQRIGNMLIES 337
            +++  C  + N +   RI + + +S
Sbjct: 1178 SMISGCVDNGNEDQALRIYHRMRQS 1202



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 89/186 (47%), Gaps = 5/186 (2%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFA-----QNGRPKEALALFREMQ 131
           N++L    + GS+  A +VF+  P+R LV+W  ++  +A      +G  +E L LFR ++
Sbjct: 660 NNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLR 719

Query: 132 SLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSID 191
           +         L  +L  C   G L     V+ Y  K  ++ D  +  AL+++Y+KCG + 
Sbjct: 720 ASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMR 779

Query: 192 LAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS 251
            A  +F    ++DV  +   + G    G   EAF+LF      G+ PD  S   +L+  S
Sbjct: 780 DARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVS 839

Query: 252 HLGWVE 257
            + W E
Sbjct: 840 EVNWDE 845



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 83/361 (22%), Positives = 144/361 (39%), Gaps = 71/361 (19%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYV-----RNG 56
           +V +  A D F+ N+L+  YS CG +  AR VFD + + D+V+WN+++  Y       +G
Sbjct: 647 IVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDG 706

Query: 57  EILEGLKLFD------------------KMPQRNDVSWNS-----------------ILG 81
              EGL LF                   K+   +   W +                 + G
Sbjct: 707 NAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSG 766

Query: 82  GLVRF----GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEP 137
            LV      G + DA  +F+ M +R +V W +++ G+ Q G  KEA  LF E     L P
Sbjct: 767 ALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRP 826

Query: 138 NSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVF 197
           +   +  +L+  +++   D G W+   +Q    KL      +L D               
Sbjct: 827 DEFSVQLILNGVSEVN-WDEGKWLADQVQAYAAKL------SLSD--------------- 864

Query: 198 HSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVE 257
               + DV  +   +      G +  A E F NM    I  D+++ + VL+A +    +E
Sbjct: 865 ---DNPDVFCWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLE 921

Query: 258 KGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
            G    H +    G+  ++     +V++  + G    A      M    D + W +++ +
Sbjct: 922 LG-KQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMK-HLDLISWNSMISS 979

Query: 318 C 318
           C
Sbjct: 980 C 980



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 79/171 (46%), Gaps = 16/171 (9%)

Query: 2    VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
            V+K     D FV  SL+  Y+ CG + DA  +F + +  ++  WN+M+ G  ++G   E 
Sbjct: 1234 VIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEA 1293

Query: 62   LKLFDKM------PQRNDVSWNSILGGLVRFGSVDDACRVFNQMP-----KRSLVSWVVL 110
            + LF  M      P R  VS+  IL      G   +A    + MP     +  +  +  L
Sbjct: 1294 VNLFKSMKSHGIEPDR--VSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCL 1351

Query: 111  ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161
            +    + G  +EA    + ++++  + +++I  +LL AC   G ++ G  V
Sbjct: 1352 VDALGRAGLVQEA---DKVIETMPFKASASINRALLGACRIQGDVETGKRV 1399


>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 196/460 (42%), Positives = 290/460 (63%), Gaps = 30/460 (6%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           NS+I+ Y + G +L    LFD+M  R+                             R++V
Sbjct: 131 NSLIDMYFKAGYLLLARHLFDEMFVRD-----------------------------RNVV 161

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLD-LEPNSAILVSLLSACAQLGALDYGNWVYSY 164
            W  +I+G+AQN +  +A+ +FR MQ    + PN   LVS+L ACA LGALD G W+  +
Sbjct: 162 CWNAMIAGYAQNEKYSDAIEVFRMMQQFGGVVPNDVTLVSVLPACAHLGALDLGKWIDGF 221

Query: 165 IQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEA 224
           I ++ + L   L  AL DMYAKCG I  A +VF+   ++DV +++  I GLAM GH+ EA
Sbjct: 222 ISRREMALGLFLGNALADMYAKCGCITEARRVFNKMEERDVISWSIIICGLAMYGHADEA 281

Query: 225 FELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVD 284
           F  F  M   G  P+ + ++ +L+AC+H G V+KG   F++M   +G+ P+++HY C+VD
Sbjct: 282 FGCFYEMLDCGEKPNDVVFMGLLTACTHAGLVKKGLNCFNTMDKEYGVSPKVEHYGCVVD 341

Query: 285 LLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGR 344
           LL RAG L++AE+ I+SMPMKP+ +IWG LLG CR++R++  GQR+   ++E D +H G 
Sbjct: 342 LLSRAGELDKAEDMISSMPMKPNVIIWGALLGGCRIYRDSGRGQRVVQHILELDSDHSGS 401

Query: 345 YILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEI 404
           Y+ L+N+Y    + ++A + R  MR+  + + PGCS IE+D  VHEF  GD SH ++ +I
Sbjct: 402 YVYLANVYSSMGRLDDAAKCRLRMRENGVLKTPGCSWIEVDNTVHEFFMGDLSHPESNKI 461

Query: 405 YQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRI 464
           Y    E++ K+K  GY  +T  V+  I+EEEKE  +  HSEKLA+AFGLI T  G+ IR+
Sbjct: 462 YSMIRELMWKMKLAGYKPKTDLVVHSIDEEEKEDALSIHSEKLAIAFGLISTSEGTTIRV 521

Query: 465 VKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGS 504
           VKN+RIC+DCH A K++S + KR+I +RDR  +HHF+DG+
Sbjct: 522 VKNLRICNDCHDAAKIISGIVKREIIVRDRSRFHHFKDGA 561



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 117/259 (45%), Gaps = 47/259 (18%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDES--DDLDVVSWNSMINGYVRNGEI 58
           MV K  F  ++FV+NSLI  Y   G +  AR +FDE    D +VV WN+MI GY +N + 
Sbjct: 117 MVTKQGFESNLFVRNSLIDMYFKAGYLLLARHLFDEMFVRDRNVVCWNAMIAGYAQNEKY 176

Query: 59  LEGLKLFDKMPQ-----RNDVSWNSILGGLVRFGSVD----------------------- 90
            + +++F  M Q      NDV+  S+L      G++D                       
Sbjct: 177 SDAIEVFRMMQQFGGVVPNDVTLVSVLPACAHLGALDLGKWIDGFISRREMALGLFLGNA 236

Query: 91  ------------DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPN 138
                       +A RVFN+M +R ++SW ++I G A  G   EA   F EM     +PN
Sbjct: 237 LADMYAKCGCITEARRVFNKMEERDVISWSIIICGLAMYGHADEAFGCFYEMLDCGEKPN 296

Query: 139 SAILVSLLSACAQLGALDYGNWVYSYIQKK---CIKLDSILCAALIDMYAKCGSIDLAMQ 195
             + + LL+AC   G +  G   ++ + K+     K++   C  ++D+ ++ G +D A  
Sbjct: 297 DVVFMGLLTACTHAGLVKKGLNCFNTMDKEYGVSPKVEHYGC--VVDLLSRAGELDKAED 354

Query: 196 VFHSYGDKDVSAYTSAIFG 214
           +  S   K       A+ G
Sbjct: 355 MISSMPMKPNVIIWGALLG 373



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 89/186 (47%), Gaps = 5/186 (2%)

Query: 79  ILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPN 138
           ++G      +V  A  +F  +   ++ +    +   AQN     A+  F    S    PN
Sbjct: 30  LIGACADHANVRQAALIFAHLASPNIFAHNATLKALAQNSHWFHAIQFFNHQVSSPNAPN 89

Query: 139 SA--ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
                  S+L ACA L  +  G  +++ + K+  + +  +  +LIDMY K G + LA  +
Sbjct: 90  PDEFTFTSVLKACAGLAHVVNGQKIHAMVTKQGFESNLFVRNSLIDMYFKAGYLLLARHL 149

Query: 197 FHSY--GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKS-KGISPDSISYIAVLSACSHL 253
           F      D++V  + + I G A N    +A E+F  M+   G+ P+ ++ ++VL AC+HL
Sbjct: 150 FDEMFVRDRNVVCWNAMIAGYAQNEKYSDAIEVFRMMQQFGGVVPNDVTLVSVLPACAHL 209

Query: 254 GWVEKG 259
           G ++ G
Sbjct: 210 GALDLG 215



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 93/206 (45%), Gaps = 19/206 (9%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           + +   A  +F+ N+L   Y+ CG + +AR VF++ ++ DV+SW+ +I G    G   E 
Sbjct: 222 ISRREMALGLFLGNALADMYAKCGCITEARRVFNKMEERDVISWSIIICGLAMYGHADEA 281

Query: 62  LKLFDKM----PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVV-----LIS 112
              F +M     + NDV +  +L      G V      FN M K   VS  V     ++ 
Sbjct: 282 FGCFYEMLDCGEKPNDVVFMGLLTACTHAGLVKKGLNCFNTMDKEYGVSPKVEHYGCVVD 341

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKL 172
             ++ G   +A  +   + S+ ++PN  I  +LL  C        G  V  +I    ++L
Sbjct: 342 LLSRAGELDKAEDM---ISSMPMKPNVIIWGALLGGCRIYRDSGRGQRVVQHI----LEL 394

Query: 173 DSILCAA---LIDMYAKCGSIDLAMQ 195
           DS    +   L ++Y+  G +D A +
Sbjct: 395 DSDHSGSYVYLANVYSSMGRLDDAAK 420


>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 616

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 198/469 (42%), Positives = 298/469 (63%), Gaps = 3/469 (0%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           NSM+  Y+  GEI    ++FD+MP R+ VSWNS++ G ++ G ++ A +VF  M  + +V
Sbjct: 148 NSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELAKKVFETMSDKDVV 207

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           +W  +IS + QN  P +AL LFREM SL L P+   +VS+LSA A LG ++ G W+++Y+
Sbjct: 208 TWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYV 267

Query: 166 QKKCIKLDS-ILCAALIDMYAKCGSIDLAMQVFHSYGDK-DVSAYTSAIFGLAMNGHSIE 223
               I+L S  + +ALIDMY+KCG I+ A  VF S   + ++  + S I GLA++G + E
Sbjct: 268 SMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLARE 327

Query: 224 AFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMV 283
           A ++F  M+   I P+ I+++ +LS CSH G VE+G +YF SM + + I P + HY CM+
Sbjct: 328 ALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMI 387

Query: 284 DLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDG 343
           DL GRAG LE+A   I +MP + D + W  +L A   H + E+G+      IE   +   
Sbjct: 388 DLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIGKSAALRAIELAPDDSS 447

Query: 344 RYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAG-DRSHEKTQ 402
            Y+LLSNIY +  + ++  ++R  MR+R +K+  GCS + ++G VHEFL G +     + 
Sbjct: 448 SYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCSSMLVNGKVHEFLLGKELDSSYSG 507

Query: 403 EIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVI 462
           ++     E+V ++K  GY  +   V+ DIE+E KE+++  HSEK+A+AFGLI     + I
Sbjct: 508 QVLAKIAEVVSRLKLQGYEPDLTQVLLDIEDEGKESLLNLHSEKMAIAFGLIHINKSAPI 567

Query: 463 RIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            IVKN+R+C DCH  MKLVSKV+ R+I +RD+  +HHFE+G CSC EYW
Sbjct: 568 HIVKNLRVCCDCHCFMKLVSKVYNRQIIMRDQNRFHHFENGCCSCNEYW 616



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/324 (23%), Positives = 146/324 (45%), Gaps = 44/324 (13%)

Query: 40  LDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRF-------GSVDDA 92
           +  +S N +++   +   + E  ++  +M + N ++    +  L+ F       G +D A
Sbjct: 1   MTAISTNPVVSVLDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYA 60

Query: 93  CRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI---LVSLLSAC 149
             VF+++   +   +  LI GF+    P E+L L+  M S  L  +S +   + S+L AC
Sbjct: 61  SSVFSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSC-LNYSSGVEFSIPSVLKAC 119

Query: 150 AQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM--------------- 194
            +L A D G  V+  + K  +  D  +  +++ MY   G I+LA                
Sbjct: 120 GKLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWN 179

Query: 195 ----------------QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISP 238
                           +VF +  DKDV  +TS I     N   ++A +LF  M S G+ P
Sbjct: 180 SMIAGYLKAGEIELAKKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRP 239

Query: 239 DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHY-ACMVDLLGRAGLLEEAEN 297
           D  + ++VLSA + LG+VE+G  + H+   ++ I+       + ++D+  + G +E A +
Sbjct: 240 DGPAIVSVLSAIADLGFVEEG-KWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYH 298

Query: 298 FIASMPMKPDNVIWGTLLGACRVH 321
              S+  + +   W +++    +H
Sbjct: 299 VFRSISHRRNIGDWNSMISGLAIH 322


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/549 (37%), Positives = 316/549 (57%), Gaps = 40/549 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
            V+  F   V V  +++  Y  CG V  AR VFD   D + VSWN+MI GY  NG+  E 
Sbjct: 353 AVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEA 412

Query: 62  LKLFDKMPQRN-DVSWNSILGGL-------------------VRFG-------------- 87
           L LF +M     DV+  S+L  L                   VR G              
Sbjct: 413 LALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIGLESNVNVMNALITM 472

Query: 88  -----SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
                  D A +VF+++  ++ VSW  +I G  QNG  ++A+ LF  MQ  +++P+S  L
Sbjct: 473 YCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTL 532

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           VS++ A A +       W++ Y  +  +  D  +  ALIDMYAKCG + +A  +F+S  D
Sbjct: 533 VSIIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARD 592

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           + V  + + I G   +G    A ELFE MKS G  P+  ++++VLSACSH G V++G  Y
Sbjct: 593 RHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSVLSACSHAGLVDEGQEY 652

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F SM + +G++P ++HY  MVDLLGRAG L EA +FI  MPM+P   ++G +LGAC++H+
Sbjct: 653 FSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPGISVYGAMLGACKLHK 712

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           N E+ +     + E +      ++LL+NIY      ++   VR  M K+ +++ PG S++
Sbjct: 713 NVELAEESAQRIFELEPEEGVYHVLLANIYANASLWKDVARVRTAMEKKGLQKTPGWSIV 772

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           +L   +H F +G  +H++ ++IY    +++++IK  GY  +T S+  D+E++ K  ++  
Sbjct: 773 QLKNEIHTFYSGSTNHQQAKDIYARLAKLIEEIKAVGYVPDTDSI-HDVEDDVKAQLLNT 831

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSEKLA+A+GLI T PG+ I+I KN+R+C DCH+A KL+S V  R+I +RD + +HHF+D
Sbjct: 832 HSEKLAIAYGLIRTAPGTTIQIKKNLRVCKDCHNATKLISLVTGREIIMRDIQRFHHFKD 891

Query: 503 GSCSCLEYW 511
           G CSC +YW
Sbjct: 892 GKCSCGDYW 900



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 143/317 (45%), Gaps = 46/317 (14%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRN-------------- 55
           +     +L   Y+ C R  DAR VFD     D V+WN+++ GY RN              
Sbjct: 259 EALAATALANMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQ 318

Query: 56  ---GEILEGLKLFDKMPQRNDVSW-----------------------NSILGGLVRFGSV 89
              GE  + + L   +P   D                           +IL    + G+V
Sbjct: 319 EEDGERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAV 378

Query: 90  DDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
           D A +VF+ M  R+ VSW  +I G+A+NG   EALALF+ M    ++     +++ L AC
Sbjct: 379 DSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHAC 438

Query: 150 AQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYT 209
            +LG LD G  V+  + +  ++ +  +  ALI MY KC   DLA QVF   G K   ++ 
Sbjct: 439 GELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWN 498

Query: 210 SAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG------WVEKGFYYF 263
           + I G   NG S +A  LF  M+ + + PDS + ++++ A + +       W+       
Sbjct: 499 AMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRL 558

Query: 264 HSMFDVHGIKPELDHYA 280
           H   DV+ +   +D YA
Sbjct: 559 HLDQDVYVLTALIDMYA 575



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 91/206 (44%), Gaps = 39/206 (18%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++V+     +V V N+LI  Y  C R   A  VFDE      VSWN+MI G  +NG   +
Sbjct: 453 LLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSED 512

Query: 61  GLKLFDKM----------------PQRNDVS------W-----------------NSILG 81
            ++LF +M                P   D+S      W                  +++ 
Sbjct: 513 AVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALID 572

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G V  A  +FN    R +++W  +I G+  +G  K A+ LF EM+S    PN   
Sbjct: 573 MYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETT 632

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQK 167
            +S+LSAC+  G +D G   +S +++
Sbjct: 633 FLSVLSACSHAGLVDEGQEYFSSMKE 658



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 90/200 (45%), Gaps = 10/200 (5%)

Query: 121 KEALALFREMQSLDLE-PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
           + ALA F  M       P      SLL  CA    L  G  V++ +  + +  +++   A
Sbjct: 206 RGALAAFAAMSPASGSGPVLRTFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATA 265

Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK-GISP 238
           L +MYAKC     A +VF     +D  A+ + + G A NG +  A  +   M+ + G  P
Sbjct: 266 LANMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERP 325

Query: 239 DSISYIAVLSACSH---LGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA 295
           D+++ ++VL AC+    LG   +     H+     G   +++    ++D+  + G ++ A
Sbjct: 326 DAVTLVSVLPACADAQALGACRE----VHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSA 381

Query: 296 ENFIASMPMKPDNVIWGTLL 315
                 M  + ++V W  ++
Sbjct: 382 RKVFDGMQDR-NSVSWNAMI 400


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/514 (38%), Positives = 296/514 (57%), Gaps = 35/514 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VV+N    +VFV ++L+  Y+ C  +R A+ VFD     D VSWN +I  Y  N E  +G
Sbjct: 205 VVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECEKG 264

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQN 117
           L +F +M       N  SWN+++GG +                               QN
Sbjct: 265 LSVFGRMMSEGVGLNYASWNAVIGGCM-------------------------------QN 293

Query: 118 GRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILC 177
           GR ++AL +   MQ+   +PN   + S+L AC  L +L  G  ++ YI +     D    
Sbjct: 294 GRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTT 353

Query: 178 AALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGIS 237
            AL+ MYAKCG ++L+ +VF     +D  ++ + I   +M+G+  EA  LF  M   G+ 
Sbjct: 354 TALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVR 413

Query: 238 PDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAEN 297
           P+S+++  VLS CSH   V++G   F SM   H ++P+ DH++CMVD+L RAG LEEA  
Sbjct: 414 PNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYE 473

Query: 298 FIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLK 357
           FI  MP++P    WG LLG CRV++N E+G+   N L E + ++ G Y+LLSNI V    
Sbjct: 474 FIKKMPIEPTAGAWGALLGGCRVYKNVELGRIAANRLFEIESDNPGNYVLLSNILVSAKL 533

Query: 358 GENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKN 417
              A E RK MR R + + PGCS I++   VH F+ GD+S++++ EIY+F + + +K++ 
Sbjct: 534 WSEASETRKLMRDRGVTKNPGCSWIQVRNRVHTFVVGDKSNDQSDEIYRFLDYMGEKMRI 593

Query: 418 YGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSA 477
            GY   T  V+ D+++EEKE V+  HSEKLA+AFG++     S IR+ KN+RIC DCH+A
Sbjct: 594 AGYLPNTDFVLQDVDQEEKEEVLCNHSEKLAVAFGVLNLNGESSIRVFKNLRICGDCHNA 653

Query: 478 MKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           +K ++K+   KI +RD   +HHF DG CSC ++W
Sbjct: 654 IKFMAKIVGVKIIVRDSLRFHHFRDGLCSCQDFW 687



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 96/384 (25%), Positives = 159/384 (41%), Gaps = 77/384 (20%)

Query: 17  LIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSW 76
            I+ YS  G ++ AR +FD+    D+ +W  +I+   ++G  LE ++ ++    +N V  
Sbjct: 17  FIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEP 76

Query: 77  NSIL---------------------GGLVRFGSVDDA------------CR-------VF 96
           + +L                        +RFG   D             CR       VF
Sbjct: 77  DKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVF 136

Query: 97  NQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALD 156
             MP R ++SW  + S +   G  +EAL  FR+M      PNS  + S+L AC  L  L 
Sbjct: 137 EGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLK 196

Query: 157 YGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV----------- 205
            G  V+ ++ +  +  +  + +AL++MYA C SI  A  VF S   +D            
Sbjct: 197 SGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYF 256

Query: 206 ------------------------SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
                                   +++ + I G   NG + +A E+   M++ G  P+ I
Sbjct: 257 LNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQI 316

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
           +  +VL AC++L  + +G    H     H    +L     +V +  + G LE +   + S
Sbjct: 317 TITSVLPACTNLESL-RGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRR-VFS 374

Query: 302 MPMKPDNVIWGTLLGACRVHRNAE 325
           M  K D V W T++ A  +H N E
Sbjct: 375 MMTKRDTVSWNTMIIATSMHGNGE 398



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 121/252 (48%), Gaps = 4/252 (1%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD-LEPNSAILVSL 145
           G +  A  +F+++P+  L +W +LIS   ++GR  EA+  + + +  + +EP+  +L+S+
Sbjct: 25  GDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEPDKLLLLSV 84

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
             ACA L  +     V+    +     D +L  ALIDMY KC   + A  VF     +DV
Sbjct: 85  AKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPFRDV 144

Query: 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHS 265
            ++TS        G   EA   F  M   G  P+S++  ++L AC+ L  ++ G    H 
Sbjct: 145 ISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSG-REVHG 203

Query: 266 MFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAE 325
               +G+   +   + +V++      + +A+    SM  + D V W  L+ A  +++  E
Sbjct: 204 FVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRR-DTVSWNVLITAYFLNKECE 262

Query: 326 MGQRI-GNMLIE 336
            G  + G M+ E
Sbjct: 263 KGLSVFGRMMSE 274


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/547 (38%), Positives = 317/547 (57%), Gaps = 41/547 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K+    DVFV N+LI  YS  GR++DA+ VFD+ +  D+VSWNS+I  Y +N +    
Sbjct: 248 VLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTA 307

Query: 62  LKLFDKM-------------------PQRNDVSWN-SILGGLVR---------------- 85
           L+ F  M                    Q +D   + SILG ++R                
Sbjct: 308 LRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVN 367

Query: 86  ----FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL-DLEPNSA 140
                G ++ A  VF+Q+P++  +SW  L++G+ QNG   EA+  +  M+   D  PN  
Sbjct: 368 MYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQG 427

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
             VS++ A + +GAL  G  +++ + K  + LD  +   LID+Y KCG ++ AM +F+  
Sbjct: 428 TWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEI 487

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
                  + + I  L ++G   EA +LF++M ++ +  D I+++++LSACSH G V++G 
Sbjct: 488 PRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQ 547

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
             F  M   +GIKP L HY CMVDLLGRAG LE+A   + +MP++PD  IWG LL AC++
Sbjct: 548 KCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKI 607

Query: 321 HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS 380
           + NAE+G    + L+E D  + G Y+LLSNIY  T K E   +VR   R R +++ PG S
Sbjct: 608 YGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWS 667

Query: 381 LIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVI 440
            + +      F  G+++H K  EIY+  + +  K+K+ GY  +   V  DIEE+EKE ++
Sbjct: 668 SVVVGSKAEVFYTGNQTHPKYTEIYKELKVLSAKMKSLGYVPDYSFVYQDIEEDEKEQIL 727

Query: 441 GYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF 500
             HSE+LA+AFG+I T P S IRI KN+R+C DCH+A K +S++ +R+I +RD   +HHF
Sbjct: 728 NSHSERLAIAFGIISTPPRSPIRIFKNLRVCGDCHNATKYISRISEREIVVRDSNRFHHF 787

Query: 501 EDGSCSC 507
           +DG CSC
Sbjct: 788 KDGICSC 794



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 180/377 (47%), Gaps = 44/377 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V K  F  DVFV  SL+  YS  G +  A  VF +    DV SWN+MI+G+ +NG     
Sbjct: 147 VFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGA 206

Query: 62  LKLFDKM-------------------PQRNDV--------------------SWNSILGG 82
           L + ++M                    Q +DV                      N+++  
Sbjct: 207 LGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINM 266

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             +FG + DA  VF+QM  R LVSW  +I+ + QN  P  AL  F+ MQ   + P+   +
Sbjct: 267 YSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTV 326

Query: 143 VSLLSACAQLGALDYGNWVYSY-IQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           VSL S  +QL        +  + I+++ +  D ++  AL++MYAK G ++ A  VF    
Sbjct: 327 VSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLP 386

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKS-KGISPDSISYIAVLSACSHLGWVEKGF 260
            KD  ++ + + G   NG + EA + +  M+  +   P+  ++++++ A SH+G +++G 
Sbjct: 387 RKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGM 446

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
              H+    + +  ++    C++DL G+ G LE+A +    +P +  +V W  ++ +  +
Sbjct: 447 -KIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIP-RDTSVPWNAIIASLGI 504

Query: 321 H-RNAEMGQRIGNMLIE 336
           H R  E  Q   +ML E
Sbjct: 505 HGRGEEALQLFKDMLAE 521



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 147/346 (42%), Gaps = 41/346 (11%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL----KLF 65
           ++ +   LI  Y   G +  +R  FD     ++ SWNS+I+ YVR G+  E +    +LF
Sbjct: 53  NIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLF 112

Query: 66  D-----------------------------------KMPQRNDVSWNSILGGLV-RFGSV 89
                                               KM   +DV   + L  L  R+G +
Sbjct: 113 SMCGGGHLRPDFYTFPPILKACVSLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVL 172

Query: 90  DDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
           D A +VF  MP + + SW  +ISGF QNG    AL +   M+   ++ ++  + S+L  C
Sbjct: 173 DVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVC 232

Query: 150 AQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYT 209
           AQ   +  G  ++ ++ K  +  D  +  ALI+MY+K G +  A  VF     +D+ ++ 
Sbjct: 233 AQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWN 292

Query: 210 SAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDV 269
           S I     N     A   F+ M+  GI PD ++ +++ S  S L            +   
Sbjct: 293 SIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRR 352

Query: 270 HGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
             +  ++     +V++  + G +  A      +P K D + W TL+
Sbjct: 353 EWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRK-DTISWNTLV 397



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 132/297 (44%), Gaps = 34/297 (11%)

Query: 33  VFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDA 92
           VF +S +  +V    +IN YV +G+I      FD + ++N  SWNSI+   VRFG   +A
Sbjct: 47  VFGKSQN--IVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEA 104

Query: 93  CRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQL 152
               NQ                           LF       L P+      +L AC  L
Sbjct: 105 MNCVNQ---------------------------LFSMCGGGHLRPDFYTFPPILKACVSL 137

Query: 153 GALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAI 212
             +D G  V+  + K   + D  + A+L+ +Y++ G +D+A +VF     KDV ++ + I
Sbjct: 138 --VD-GKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMI 194

Query: 213 FGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGI 272
            G   NG++  A  +   MK +G+  D+I+  ++L  C+    V  G    H     HG+
Sbjct: 195 SGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGV-LIHLHVLKHGL 253

Query: 273 KPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQR 329
             ++     ++++  + G L++A+     M ++ D V W +++ A   + +     R
Sbjct: 254 DSDVFVSNALINMYSKFGRLQDAQMVFDQMEVR-DLVSWNSIIAAYEQNNDPSTALR 309


>gi|226493697|ref|NP_001147320.1| selenium-binding protein-like [Zea mays]
 gi|195609890|gb|ACG26775.1| selenium-binding protein-like [Zea mays]
          Length = 605

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 184/440 (41%), Positives = 291/440 (66%), Gaps = 2/440 (0%)

Query: 74  VSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL 133
           VSW +++GGL++ G  DDA  +F+ MP+R+LVSW  ++SG+ +  R  +AL +F EM++ 
Sbjct: 166 VSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDALEVFDEMRAR 225

Query: 134 DLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLA 193
            ++ N  +  + + AC   GAL  G  V+ ++++  I++D  L  A++DMY KCG ++ A
Sbjct: 226 GVDGNVFVAATAVVACTGAGALARGREVHRWVEQSGIQMDEKLATAVVDMYCKCGCVEEA 285

Query: 194 MQVFHSY--GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS 251
            +VF +     K ++ +   I G A++G   +A +LF  M+ +G++PD ++ + VL+AC+
Sbjct: 286 WRVFEALPLAAKGLTTWNCMIGGFAVHGRGQDALKLFGRMEREGVAPDDVTLVNVLTACA 345

Query: 252 HLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIW 311
           H G + +G +YF+ +   +GI+P+++HY CMVDL GRAG LEEA+  I  MPM+PD  + 
Sbjct: 346 HAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVIQDMPMEPDVGVL 405

Query: 312 GTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKR 371
           G L GA ++H + ++G+ IG  +IE D  + GRY+LL+N+     + E+   VR+ M +R
Sbjct: 406 GALFGASKIHGDVDLGEAIGWRVIELDPQNSGRYVLLANLLATAGRWEDVARVRRLMDER 465

Query: 372 KIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDI 431
            + +  G S+IE+ G V EF  G   H + +E+Y    ++++KI+  GY  +TR V+  I
Sbjct: 466 NVSKEAGRSVIEVQGEVCEFQCGGLCHPRAEEVYAMASDMMRKIRAEGYVPDTRDVLHAI 525

Query: 432 EEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISI 491
            EEEKET + YHSEKLA+AFGL+ T+PG  +RI KN+R+C DCH A K VS+VF+R+I +
Sbjct: 526 AEEEKETPLLYHSEKLAIAFGLLHTRPGDTMRITKNLRVCRDCHEATKFVSRVFERQIVV 585

Query: 492 RDRKHYHHFEDGSCSCLEYW 511
           RDR  +HHF+DG CSC +YW
Sbjct: 586 RDRNRFHHFKDGQCSCKDYW 605



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 116/252 (46%), Gaps = 48/252 (19%)

Query: 8   AYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDK 67
           A DV    +++      G   DAR +FD   + ++VSWN+M++GYV+    L+ L++FD+
Sbjct: 162 ALDVVSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDALEVFDE 221

Query: 68  MPQRNDVSWNSIL-----------GGLVR-----------------------------FG 87
           M  R  V  N  +           G L R                              G
Sbjct: 222 MRARG-VDGNVFVAATAVVACTGAGALARGREVHRWVEQSGIQMDEKLATAVVDMYCKCG 280

Query: 88  SVDDACRVFNQMP--KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
            V++A RVF  +P   + L +W  +I GFA +GR ++AL LF  M+   + P+   LV++
Sbjct: 281 CVEEAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGQDALKLFGRMEREGVAPDDVTLVNV 340

Query: 146 LSACAQLGALDYGNWVYSYIQKKC---IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           L+ACA  G L  G   ++Y+ ++     K++   C  ++D+Y + G ++ A +V      
Sbjct: 341 LTACAHAGMLSEGRHYFNYVPQRYGIEPKMEHYGC--MVDLYGRAGRLEEAKKVIQDMPM 398

Query: 203 KDVSAYTSAIFG 214
           +       A+FG
Sbjct: 399 EPDVGVLGALFG 410



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 80/171 (46%), Gaps = 14/171 (8%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESD--DLDVVSWNSMINGYVRNGEIL 59
           V ++    D  +  +++  Y  CG V +A  VF+        + +WN MI G+  +G   
Sbjct: 257 VEQSGIQMDEKLATAVVDMYCKCGCVEEAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGQ 316

Query: 60  EGLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVL 110
           + LKLF +M +     +DV+  ++L      G + +    FN +P+R      +  +  +
Sbjct: 317 DALKLFGRMEREGVAPDDVTLVNVLTACAHAGMLSEGRHYFNYVPQRYGIEPKMEHYGCM 376

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161
           +  + + GR +EA  +   +Q + +EP+  +L +L  A    G +D G  +
Sbjct: 377 VDLYGRAGRLEEAKKV---IQDMPMEPDVGVLGALFGASKIHGDVDLGEAI 424



 Score = 45.4 bits (106), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 31/151 (20%), Positives = 69/151 (45%), Gaps = 2/151 (1%)

Query: 172 LDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM 231
           LD +    ++    K G  D A  +F    ++++ ++ + + G       ++A E+F+ M
Sbjct: 163 LDVVSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDALEVFDEM 222

Query: 232 KSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGL 291
           +++G+  +       + AC+  G + +G    H   +  GI+ +      +VD+  + G 
Sbjct: 223 RARGVDGNVFVAATAVVACTGAGALARG-REVHRWVEQSGIQMDEKLATAVVDMYCKCGC 281

Query: 292 LEEAENFIASMPMKPDNV-IWGTLLGACRVH 321
           +EEA     ++P+    +  W  ++G   VH
Sbjct: 282 VEEAWRVFEALPLAAKGLTTWNCMIGGFAVH 312


>gi|357464871|ref|XP_003602717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491765|gb|AES72968.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 554

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 196/439 (44%), Positives = 284/439 (64%), Gaps = 4/439 (0%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQ--SLD 134
           N+++      GS+D A ++F++M +R +VSW  LIS   +N  P EAL++F++MQ    D
Sbjct: 116 NALINAYGSRGSLDVAVKLFDEMRRRDIVSWSTLISCLVKNNLPAEALSVFQQMQMGHRD 175

Query: 135 LEP--NSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDL 192
           +    + AI++S++SA + LG ++ G WV+S+I +  I +   L  ALI+MY++CG ID 
Sbjct: 176 IRNWLDRAIMLSVISAVSSLGVIELGIWVHSFIVRMGIVMTVPLGTALINMYSRCGLIDR 235

Query: 193 AMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSH 252
           +++VF    +++V  +T+ I GLA++G S EA ++F  MK  G+ PD   +I VL ACSH
Sbjct: 236 SVKVFDEMPERNVVTWTALINGLAVHGRSREALKVFYEMKESGLKPDGALFIGVLVACSH 295

Query: 253 LGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWG 312
            G VE G+  F SM D  GIKP L+HY CMVDLLGRAGL+ EA +F+  MP+KP++VIW 
Sbjct: 296 GGLVEDGWRVFESMRDEFGIKPMLEHYGCMVDLLGRAGLILEAFDFVEEMPLKPNSVIWR 355

Query: 313 TLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRK 372
           TLLGAC  H +  + ++    +IE D  HDG Y+LLSN Y           +R +M++ +
Sbjct: 356 TLLGACVNHNHLGLAEKARERIIELDPYHDGDYVLLSNAYGRVGNWGGKAGLRNSMKQNR 415

Query: 373 IKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIE 432
           I + PG S + +D VVHEF++GD  H + +EI +F   I+  +K  GY   T SV+ DI+
Sbjct: 416 IVKEPGLSFVHIDQVVHEFVSGDHVHPQWEEITKFLASIIDTVKLGGYTPNTSSVLHDIQ 475

Query: 433 EEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIR 492
           +EEKE  +GYHSEKLA+AF L+  +    IR++KN+RIC DCH  MK  S +F R I IR
Sbjct: 476 DEEKEHCLGYHSEKLAVAFVLLYHRDRRTIRVIKNLRICYDCHDFMKHASGIFDRDIIIR 535

Query: 493 DRKHYHHFEDGSCSCLEYW 511
           DR  +HHF  G CSC ++W
Sbjct: 536 DRNRFHHFSKGLCSCQDFW 554



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 135/305 (44%), Gaps = 81/305 (26%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           + K  F  ++FV+N+LI  Y   G +  A  +FDE    D+VSW+++I+  V+N    E 
Sbjct: 103 IFKLGFDTNIFVQNALINAYGSRGSLDVAVKLFDEMRRRDIVSWSTLISCLVKNNLPAEA 162

Query: 62  LKLFDKMP--QRNDVSW-----------------------------------------NS 78
           L +F +M    R+  +W                                          +
Sbjct: 163 LSVFQQMQMGHRDIRNWLDRAIMLSVISAVSSLGVIELGIWVHSFIVRMGIVMTVPLGTA 222

Query: 79  ILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPN 138
           ++    R G +D + +VF++MP+R++V+W  LI+G A +GR +EAL +F EM+   L+P+
Sbjct: 223 LINMYSRCGLIDRSVKVFDEMPERNVVTWTALINGLAVHGRSREALKVFYEMKESGLKPD 282

Query: 139 SAILVSLLSACAQLGALDYGNWVYSYIQKKC-IKLDSILCAALIDMYAKCGSIDLAMQVF 197
            A+ + +L AC+  G ++ G  V+  ++ +  IK        ++D+  + G I       
Sbjct: 283 GALFIGVLVACSHGGLVEDGWRVFESMRDEFGIKPMLEHYGCMVDLLGRAGLI------- 335

Query: 198 HSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC---SHLG 254
                                   +EAF+  E M  K   P+S+ +  +L AC   +HLG
Sbjct: 336 ------------------------LEAFDFVEEMPLK---PNSVIWRTLLGACVNHNHLG 368

Query: 255 WVEKG 259
             EK 
Sbjct: 369 LAEKA 373


>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/512 (40%), Positives = 311/512 (60%), Gaps = 36/512 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           M+ +     + FVK +L+  ++  G +  AR +FDE                        
Sbjct: 283 MIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGS--------------------- 321

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
                    QRN V+WN ++    R G +  A  +F+ MPKR +VSW  +I+G+AQNG  
Sbjct: 322 ---------QRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGES 372

Query: 121 KEALALFREMQS-LDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
             ++ LF+EM S +D++P+   + S+LSAC  +GAL    WV   +++K IKL      +
Sbjct: 373 AMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNS 432

Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
           LI MY+KCGS+  A ++F + G +DV ++ + I G A NGH  EA +L   M+ +GI PD
Sbjct: 433 LIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPD 492

Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI 299
            ++YI VL+ACSH G + +G   F S+       P +DHYACMVDLLGRAG L+EA+  I
Sbjct: 493 HVTYIGVLTACSHAGLLNEGKNVFKSI-----QAPTVDHYACMVDLLGRAGELDEAKMLI 547

Query: 300 ASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGE 359
            SMPMKP   ++G+LL A R+H+   +G+   + L E +  + G Y+LLSNIY    + E
Sbjct: 548 QSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLSNIYASFGRWE 607

Query: 360 NAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYG 419
           + + VR+ M+K  +K++ G S +E  G VH+F  GDRSHE++++IY+   E+ +K+K  G
Sbjct: 608 DVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDIYKLLAELERKMKRVG 667

Query: 420 YNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMK 479
           +  +    + D+EEEEKE ++G HSEKLA+ F L+ ++ G+ IR+VKN+RIC DCH+A+K
Sbjct: 668 FVADKSCALRDVEEEEKEEMLGTHSEKLAICFALLISEVGTTIRVVKNLRICLDCHTAIK 727

Query: 480 LVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           ++SK+  R+I +RD   +H F +G CSC +YW
Sbjct: 728 MISKLEGREIVVRDNNRFHCFSEGMCSCHDYW 759



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 176/339 (51%), Gaps = 35/339 (10%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D F++N+++  Y+  G+V  AR +F++  +  +  WNSMI+G  ++G   E + LF+ MP
Sbjct: 129 DHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMP 188

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE 129
            RN ++W S++ G  + G ++ A R F++MP+RS+VSW  + S +AQ   PKEAL LF +
Sbjct: 189 ARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQ 248

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
           M    + P+    V  +S+C+ +G     + +   I +K I L+S +  AL+DM+AK G+
Sbjct: 249 MLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGN 308

Query: 190 IDLAMQVFHSYGD--------------------------------KDVSAYTSAIFGLAM 217
           +++A  +F   G                                 +DV ++ S I G A 
Sbjct: 309 LEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQ 368

Query: 218 NGHSIEAFELFENMKS-KGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPEL 276
           NG S  + ELF+ M S   I PD ++  +VLSAC H+G + K  Y+   +     IK  +
Sbjct: 369 NGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGAL-KLSYWVLDIVREKNIKLGI 427

Query: 277 DHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
             +  ++ +  + G + +A     +M  + D V + TL+
Sbjct: 428 SGFNSLIFMYSKCGSVADAHRIFQTMGTR-DVVSFNTLI 465



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 118/266 (44%), Gaps = 29/266 (10%)

Query: 95  VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA 154
           +F   P      +  ++  +++ G   + ++LF+   SL+L P   + + L+    +   
Sbjct: 56  IFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGK--- 112

Query: 155 LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFG 214
              GN  ++Y+ K     D  +  A++DMYAK G +DLA  +F    ++ ++ + S I G
Sbjct: 113 --SGNLFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISG 170

Query: 215 LAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP 274
              +G+  EA  LF  M ++ I    I++ ++++  + +G +E    YF  M       P
Sbjct: 171 CWKSGNETEAVVLFNMMPARNI----ITWTSMVTGYAKMGDLESARRYFDEM-------P 219

Query: 275 E--LDHYACMVDLLGRAGLLEEAENFIASM---PMKPDNVIWGTLLGACRVHRNAEMGQR 329
           E  +  +  M     +    +EA N    M    + PD+  W   + +C    +  +   
Sbjct: 220 ERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADS 279

Query: 330 IGNMLIESDQNHDGRYILLSNIYVET 355
           I  M+   DQ H     ++ N +V+T
Sbjct: 280 ILRMI---DQKH-----IVLNSFVKT 297


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/512 (40%), Positives = 311/512 (60%), Gaps = 36/512 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           M+ +     + FVK +L+  ++  G +  AR +FDE                        
Sbjct: 283 MIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGS--------------------- 321

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
                    QRN V+WN ++    R G +  A  +F+ MPKR +VSW  +I+G+AQNG  
Sbjct: 322 ---------QRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGES 372

Query: 121 KEALALFREMQS-LDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
             ++ LF+EM S +D++P+   + S+LSAC  +GAL    WV   +++K IKL      +
Sbjct: 373 AMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNS 432

Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
           LI MY+KCGS+  A ++F + G +DV ++ + I G A NGH  EA +L   M+ +GI PD
Sbjct: 433 LIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPD 492

Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI 299
            ++YI VL+ACSH G + +G   F S+       P +DHYACMVDLLGRAG L+EA+  I
Sbjct: 493 HVTYIGVLTACSHAGLLNEGKNVFKSI-----QAPTVDHYACMVDLLGRAGELDEAKMLI 547

Query: 300 ASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGE 359
            SMPMKP   ++G+LL A R+H+   +G+   + L E +  + G Y+LLSNIY    + E
Sbjct: 548 QSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLSNIYASFGRWE 607

Query: 360 NAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYG 419
           + + VR+ M+K  +K++ G S +E  G VH+F  GDRSHE++++IY+   E+ +K+K  G
Sbjct: 608 DVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDIYKLLAELERKMKRVG 667

Query: 420 YNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMK 479
           +  +    + D+EEEEKE ++G HSEKLA+ F L+ ++ G+ IR+VKN+RIC DCH+A+K
Sbjct: 668 FVADKSCALRDVEEEEKEEMLGTHSEKLAICFALLISEVGTTIRVVKNLRICLDCHTAIK 727

Query: 480 LVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           ++SK+  R+I +RD   +H F +G CSC +YW
Sbjct: 728 MISKLEGREIVVRDNNRFHCFSEGMCSCHDYW 759



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 176/339 (51%), Gaps = 35/339 (10%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D F++N+++  Y+  G+V  AR +F++  +  +  WNSMI+G  ++G   E + LF+ MP
Sbjct: 129 DHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMP 188

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE 129
            RN ++W S++ G  + G ++ A R F++MP+RS+VSW  + S +AQ   PKEAL LF +
Sbjct: 189 ARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQ 248

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
           M    + P+    V  +S+C+ +G     + +   I +K I L+S +  AL+DM+AK G+
Sbjct: 249 MLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGN 308

Query: 190 IDLAMQVFHSYGD--------------------------------KDVSAYTSAIFGLAM 217
           +++A  +F   G                                 +DV ++ S I G A 
Sbjct: 309 LEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQ 368

Query: 218 NGHSIEAFELFENMKS-KGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPEL 276
           NG S  + ELF+ M S   I PD ++  +VLSAC H+G + K  Y+   +     IK  +
Sbjct: 369 NGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGAL-KLSYWVLDIVREKNIKLGI 427

Query: 277 DHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
             +  ++ +  + G + +A     +M  + D V + TL+
Sbjct: 428 SGFNSLIFMYSKCGSVADAHRIFQTMGTR-DVVSFNTLI 465



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 118/266 (44%), Gaps = 29/266 (10%)

Query: 95  VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA 154
           +F   P      +  ++  +++ G   + ++LF+   SL+L P   + + L+    +   
Sbjct: 56  IFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGK--- 112

Query: 155 LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFG 214
              GN  ++Y+ K     D  +  A++DMYAK G +DLA  +F    ++ ++ + S I G
Sbjct: 113 --SGNMFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISG 170

Query: 215 LAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP 274
              +G+  EA  LF  M ++ I    I++ ++++  + +G +E    YF  M       P
Sbjct: 171 CWKSGNETEAVVLFNMMPARNI----ITWTSMVTGYAKMGDLESARRYFDEM-------P 219

Query: 275 E--LDHYACMVDLLGRAGLLEEAENFIASM---PMKPDNVIWGTLLGACRVHRNAEMGQR 329
           E  +  +  M     +    +EA N    M    + PD+  W   + +C    +  +   
Sbjct: 220 ERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADS 279

Query: 330 IGNMLIESDQNHDGRYILLSNIYVET 355
           I  M+   DQ H     ++ N +V+T
Sbjct: 280 ILRMI---DQKH-----IVLNSFVKT 297


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1005

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 201/551 (36%), Positives = 321/551 (58%), Gaps = 43/551 (7%)

Query: 2    VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
            V K  F YD  V N+L+  Y   G V+D   VF+ + + D++SWN++++G+  N     G
Sbjct: 457  VCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTG 516

Query: 62   LKLFDKM------PQ----------------------------RNDVSWNSILGGLV--- 84
            L++F++M      P                             +N +  N  +G  +   
Sbjct: 517  LRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDM 576

Query: 85   ----RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
                RF  ++DA  +FN++ KR L +W V+++G+AQ+G+ ++A+  F +MQ   ++PN  
Sbjct: 577  YAKNRF--LEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEF 634

Query: 141  ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
             L S LS C+++  LD G  ++S   K     D  + +AL+DMYAKCG ++ A  VF   
Sbjct: 635  TLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGL 694

Query: 201  GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
              +D  ++ + I G + +G   +A + FE M  +G  PD +++I VLSACSH+G +E+G 
Sbjct: 695  VSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGK 754

Query: 261  YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
             +F+S+  ++GI P ++HYACMVD+LGRAG   E E+FI  M +  + +IW T+LGAC++
Sbjct: 755  KHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKM 814

Query: 321  HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS 380
            H N E G+R    L E +   D  YILLSN++      ++   VR  M  R +K+ PGCS
Sbjct: 815  HGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCS 874

Query: 381  LIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVI 440
             +E++G VH FL+ D SH K +EI+   +++ +K+ + GY   T  V+ ++ + EK+ ++
Sbjct: 875  WVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQKLMSVGYTPNTDHVLHNVSDREKQELL 934

Query: 441  GYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF 500
             YHSE+LALAF L+ T     IRI KN+RIC DCH  MK +S++  +++ +RD   +HHF
Sbjct: 935  FYHSERLALAFALLSTSTRKTIRIFKNLRICGDCHDFMKSISEITNQELVVRDINCFHHF 994

Query: 501  EDGSCSCLEYW 511
            ++GSCSC  +W
Sbjct: 995  KNGSCSCQNFW 1005



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 106/385 (27%), Positives = 174/385 (45%), Gaps = 51/385 (13%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K+    D  + NSL+  Y+ CG    A  VF E  + DVVSW ++I G+V  G     
Sbjct: 154 VIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYGSGA 213

Query: 62  LKLFDKMPQR----NDVSWNSILGGL----------------VRFGSVDD---------- 91
           + LF +M +     N+ ++ + L                   ++ G   D          
Sbjct: 214 VNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDL 273

Query: 92  ---------ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
                    A RVF  MPK++ VSW  L++GFAQ G  ++ L LF  M   ++  +   L
Sbjct: 274 YAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTL 333

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            ++L  CA  G L  G  V+S   +   +LD  +   L+DMY+KCG    A++VF    D
Sbjct: 334 STVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIED 393

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
            DV ++++ I  L   G S EA E+F+ M+  G+ P+  +  +++SA + LG      YY
Sbjct: 394 PDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLG----DLYY 449

Query: 263 ---FHSMFDVHGIKPELDHYAC--MVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
               H+    +G   E D+  C  +V +  + G +++      +   + D + W  LL  
Sbjct: 450 GESIHACVCKYGF--EYDNTVCNALVTMYMKIGSVQDGCRVFEATTNR-DLISWNALLSG 506

Query: 318 CRVHRNAEMGQRIGNMLIESDQNHD 342
              +   + G RI N ++    N +
Sbjct: 507 FHDNETCDTGLRIFNQMLAEGFNPN 531



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 163/351 (46%), Gaps = 49/351 (13%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D+FV ++L+  Y+ CG +  A  VF      + VSWN+++NG+ + G+  + L LF +M 
Sbjct: 263 DLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMT 322

Query: 70  QR----NDVSWNSILGGLVRFGSV-----------------------------------D 90
                 +  + +++L G    G++                                    
Sbjct: 323 GSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAG 382

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           DA +VF ++    +VSW  +I+   Q G+ +EA  +F+ M+   + PN   L SL+SA  
Sbjct: 383 DALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAAT 442

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
            LG L YG  +++ + K   + D+ +C AL+ MY K GS+    +VF +  ++D+ ++ +
Sbjct: 443 DLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNA 502

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            + G   N        +F  M ++G +P+  ++I++L +CS L  V+ G    H+     
Sbjct: 503 LLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLG-KQVHAQI--- 558

Query: 271 GIKPELDHY----ACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
            +K  LD        +VD+  +   LE+AE     + +K D   W  ++  
Sbjct: 559 -VKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRL-IKRDLFAWTVIVAG 607



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 84/171 (49%), Gaps = 2/171 (1%)

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           +L  CA  G L+ G  ++  + K  I  DS L  +L+++YAKCGS + A +VF    ++D
Sbjct: 134 MLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERD 193

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           V ++T+ I G    G+   A  LF  M+ +G+  +  +Y   L ACS    +E G     
Sbjct: 194 VVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHA 253

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
               V G   +L   + +VDL  + G +  AE     MP K + V W  LL
Sbjct: 254 EAIKV-GDFSDLFVGSALVDLYAKCGEMVLAERVFLCMP-KQNAVSWNALL 302



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 84/167 (50%), Gaps = 12/167 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           M +K   + D+FV ++L+  Y+ CG V DA  VFD     D VSWN++I GY ++G+  +
Sbjct: 658 MAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGK 717

Query: 61  GLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPK-----RSLVSWVVLI 111
            LK F+ M       ++V++  +L      G +++  + FN + K      ++  +  ++
Sbjct: 718 ALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMV 777

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
               + G+  E  +   EM+   L  N  I  ++L AC   G +++G
Sbjct: 778 DILGRAGKFHEVESFIEEMK---LTSNVLIWETVLGACKMHGNIEFG 821


>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
 gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/460 (43%), Positives = 305/460 (66%), Gaps = 3/460 (0%)

Query: 53  VRNGEILEGLKLFDKMPQRNDVSWNSILGGLV-RFGSVDDACRVFNQMPKRSLVSWVVLI 111
           +R+G I+ G  L +     +DV   + L     + G + +A +VF++M  RS+V+W  +I
Sbjct: 127 LRHGRIIHGHVLVNGFG--SDVYVQTALMSFYGKCGVLCNARKVFDKMRDRSVVTWNSMI 184

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK 171
           SG+ QNG  KEA+ LF  M+ + +EPNSA  VS+LSACA LGA   G WV+ Y     + 
Sbjct: 185 SGYEQNGFAKEAIRLFDRMKEIGVEPNSATFVSVLSACAHLGAFILGCWVHEYAVGNGLD 244

Query: 172 LDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM 231
           L+ +L  +LI+MY +CG++  A +VF S  +++V A+T+ I G   NG+  +A ELF  M
Sbjct: 245 LNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEM 304

Query: 232 KSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGL 291
           +  G+ P+SI+++AVLSAC+H G V +G   F SM + + + PE++H+ C+VD+LGRAGL
Sbjct: 305 RRNGLLPNSITFVAVLSACAHAGLVNEGRRVFESMREEYRLVPEVEHHVCLVDMLGRAGL 364

Query: 292 LEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNI 351
           L+EA NFI  +  +P   IW  +LGAC++H+N  +G ++    + S+  +   Y++LSNI
Sbjct: 365 LDEAYNFIKEIHEEPAPAIWTAMLGACKMHKNFGLGAQVAEHRLASEPGNPAHYVILSNI 424

Query: 352 YVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEI 411
           Y    + +  E VR  M ++ +K+  G S I+LD   + F  GD+SH +T EIY + +++
Sbjct: 425 YALAGRMDQVEMVRDNMIRKCLKKQVGYSTIDLDRKTYLFSMGDKSHTETNEIYHYLDQL 484

Query: 412 VKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRIC 471
           ++K +  GY   + SVM ++EEEE+E  +GYHSEKLA+AFGL+ T  G+VIRIVKN+R+C
Sbjct: 485 MRKCREAGYVTVSDSVMHELEEEEREYALGYHSEKLAIAFGLLKTSRGTVIRIVKNLRMC 544

Query: 472 SDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            DCHSA+K +S +  R+I +RD+  +HHF++GSCSCL+YW
Sbjct: 545 EDCHSAIKYISVISNREIIVRDKLRFHHFKNGSCSCLDYW 584



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 98/194 (50%), Gaps = 4/194 (2%)

Query: 123 ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182
           +L  +  M   ++ P++    S++ +CA L AL +G  ++ ++       D  +  AL+ 
Sbjct: 95  SLYFYTRMVLSNVAPSNYTFTSVIKSCADLVALRHGRIIHGHVLVNGFGSDVYVQTALMS 154

Query: 183 MYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSIS 242
            Y KCG +  A +VF    D+ V  + S I G   NG + EA  LF+ MK  G+ P+S +
Sbjct: 155 FYGKCGVLCNARKVFDKMRDRSVVTWNSMISGYEQNGFAKEAIRLFDRMKEIGVEPNSAT 214

Query: 243 YIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM 302
           +++VLSAC+HLG    G  + H     +G+   +     ++++  R G + +A     S 
Sbjct: 215 FVSVLSACAHLGAFILGC-WVHEYAVGNGLDLNVVLGTSLINMYTRCGNVSKAREVFDS- 272

Query: 303 PMKPDNVI-WGTLL 315
            MK  NV+ W  ++
Sbjct: 273 -MKERNVVAWTAMI 285


>gi|115480819|ref|NP_001064003.1| Os09g0573000 [Oryza sativa Japonica Group]
 gi|113632236|dbj|BAF25917.1| Os09g0573000 [Oryza sativa Japonica Group]
          Length = 555

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/393 (48%), Positives = 259/393 (65%), Gaps = 7/393 (1%)

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC-IKLDSILCAAL 180
           + L LFR M++ D       L++LLSACA LGAL    W ++Y+   C   + + L  AL
Sbjct: 167 QVLRLFRTMRTAD----HVTLLALLSACAHLGALHTARWAHAYLATTCSFPITTNLATAL 222

Query: 181 IDMYAKCGSIDLAMQVFHSYGD--KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISP 238
           ++MY +CG +  A  +FHS     KDV  +T  I GLA+NG S +A  LF +MK   I P
Sbjct: 223 LNMYMRCGDVQTACSLFHSTPTRHKDVHTWTVMIAGLALNGFSTDALHLFTHMKDHNIQP 282

Query: 239 DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENF 298
           DS++  AVLSAC+H G V++G      M   + ++P ++HY C VDLLGRAGLLEEA   
Sbjct: 283 DSVTLTAVLSACTHAGMVDEGKRILRRMPLDYHLQPTIEHYGCTVDLLGRAGLLEEALAL 342

Query: 299 IASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKG 358
           I ++P K D  +WG LL ACR HRN EMGQ +   ++  D  H G ++ LSN+Y    K 
Sbjct: 343 IRAVPFKADVALWGALLVACRCHRNFEMGQMVAMEILRLDPQHAGAWVFLSNVYAAAGKW 402

Query: 359 ENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNY 418
           +  +EVR +M++ +I + PG S++ELDGVV+EFL+GD SH ++ +IY   +EI K +   
Sbjct: 403 DLVQEVRSSMKQHRIHKPPGSSVVELDGVVYEFLSGDHSHPQSDQIYAMLDEIGKTLSLK 462

Query: 419 GYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAM 478
           G+   T+ V FDI+EE+KE  I  HSEKLA+AFGLI T+ G+VIRIVKN+RIC DCHS M
Sbjct: 463 GHKPATKLVTFDIDEEDKEVCISQHSEKLAVAFGLINTRRGAVIRIVKNLRICEDCHSVM 522

Query: 479 KLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           K+VS+V+ R I +RDR  +HHF+ GSCSCL+YW
Sbjct: 523 KVVSEVYDRVIVVRDRNRFHHFKSGSCSCLDYW 555



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 24/175 (13%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDD---------------LDVVSWNSMINGYVR 54
           D F++ SL+  Y+  G +  AR VFD S                  D V+  ++++    
Sbjct: 133 DRFIRASLLSLYAAAGDLPAARQVFDLSPPNHYVQVLRLFRTMRTADHVTLLALLSACAH 192

Query: 55  NGEILEG------LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKR--SLVS 106
            G +         L      P   +++  ++L   +R G V  AC +F+  P R   + +
Sbjct: 193 LGALHTARWAHAYLATTCSFPITTNLA-TALLNMYMRCGDVQTACSLFHSTPTRHKDVHT 251

Query: 107 WVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161
           W V+I+G A NG   +AL LF  M+  +++P+S  L ++LSAC   G +D G  +
Sbjct: 252 WTVMIAGLALNGFSTDALHLFTHMKDHNIQPDSVTLTAVLSACTHAGMVDEGKRI 306



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 89/205 (43%), Gaps = 21/205 (10%)

Query: 6   SFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDL--DVVSWNSMINGYVRNGEILEGLK 63
           SF     +  +L+  Y  CG V+ A  +F  +     DV +W  MI G   NG   + L 
Sbjct: 211 SFPITTNLATALLNMYMRCGDVQTACSLFHSTPTRHKDVHTWTVMIAGLALNGFSTDALH 270

Query: 64  LFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMP-----KRSLVSWVVLISGF 114
           LF  M     Q + V+  ++L      G VD+  R+  +MP     + ++  +   +   
Sbjct: 271 LFTHMKDHNIQPDSVTLTAVLSACTHAGMVDEGKRILRRMPLDYHLQPTIEHYGCTVDLL 330

Query: 115 AQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDS 174
            + G  +EALAL R   ++  + + A+  +LL AC      + G  V   I    ++LD 
Sbjct: 331 GRAGLLEEALALIR---AVPFKADVALWGALLVACRCHRNFEMGQMVAMEI----LRLDP 383

Query: 175 ILCAA---LIDMYAKCGSIDLAMQV 196
               A   L ++YA  G  DL  +V
Sbjct: 384 QHAGAWVFLSNVYAAAGKWDLVQEV 408



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 95/218 (43%), Gaps = 32/218 (14%)

Query: 111 ISGFAQNGRPKEALALFREMQSLDL-EPNSAILVSLLSACAQLGALDY---------GNW 160
           I   A+  RP  A++L+R M S     PN+     LL+ACA+L   D          G  
Sbjct: 60  IRALARGPRPHLAISLYRSMLSHSRSHPNNYTYPPLLAACARLADSDSSSAAAAAAAGVA 119

Query: 161 VYSYIQKKCIK-LDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNG 219
           +++ + ++ ++  D  + A+L+ +YA  G +  A QV                F L+   
Sbjct: 120 LHASLFRRGLESPDRFIRASLLSLYAAAGDLPAARQV----------------FDLSPPN 163

Query: 220 HSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHY 279
           H ++   LF  M++     D ++ +A+LSAC+HLG +    +    +          +  
Sbjct: 164 HYVQVLRLFRTMRTA----DHVTLLALLSACAHLGALHTARWAHAYLATTCSFPITTNLA 219

Query: 280 ACMVDLLGRAGLLEEAENFIASMPMKPDNV-IWGTLLG 316
             ++++  R G ++ A +   S P +  +V  W  ++ 
Sbjct: 220 TALLNMYMRCGDVQTACSLFHSTPTRHKDVHTWTVMIA 257


>gi|317106614|dbj|BAJ53121.1| JHL07K02.11 [Jatropha curcas]
          Length = 514

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/449 (44%), Positives = 298/449 (66%), Gaps = 12/449 (2%)

Query: 71  RNDVSWNSILGGL-------VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEA 123
           R   SW   L GL       +R G  + A +VF +MP R +V+W  +I G+ +NG+ +EA
Sbjct: 70  RQVFSWTVSLAGLNLVIDSFMRIGEYEIAKKVFCKMPDRDVVTWNSMIGGYVRNGKFEEA 129

Query: 124 LALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDM 183
           L  F+ M S ++EP+     S+++ACA+LGAL++  W++  + +K I+++ IL +ALIDM
Sbjct: 130 LRSFQAMLSSNVEPDKFTFASVITACARLGALNHAQWLHDLMVQKRIEVNFILSSALIDM 189

Query: 184 YAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISY 243
           Y+KCG I+ A +VF S    DVS + S I GLA++G +++A  +F  M+++ + PDS+++
Sbjct: 190 YSKCGRIETAKEVFESVERNDVSVWNSLINGLAVHGLALDAMMVFSKMEAENVLPDSLTF 249

Query: 244 IAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP 303
           + +L ACSH G V++G  YF  M + + IKP+L+HY  MVDLLGRAGLL+EA   I +MP
Sbjct: 250 LGILKACSHCGLVKEGRKYFDLMENYYSIKPQLEHYGAMVDLLGRAGLLDEAYAMITAMP 309

Query: 304 MKPDNVIWGTLLGACRVHRNAEMGQ-RIGNMLIESDQNHDGRYILLSNIYVETLKGENAE 362
           M+PD ++W  LL ACR HRN E+G+  + N+         G Y+LLSNIY    + +NA+
Sbjct: 310 MEPDVIVWRILLSACRTHRNTELGEVAVANI----SGPKSGDYVLLSNIYCSQNRWDNAQ 365

Query: 363 EVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNV 422
           EVR+ M++  +++  G S  E + VVH F AGD+SH +T+ +Y+  E ++++ K  G+  
Sbjct: 366 EVREMMKEEGVRKRRGKSWFEWEDVVHRFRAGDKSHPETEALYKILEGLIQRTKLEGFVP 425

Query: 423 ETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVS 482
            T  VM D+ EEEKE  + +HSEKLALA+G++ T PG+ IRI KN+RIC DCH+ +K+VS
Sbjct: 426 STELVMMDVSEEEKEENLYHHSEKLALAYGILKTSPGTEIRIYKNLRICYDCHNWIKMVS 485

Query: 483 KVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            +  R I IRDR  +H FE GSCSC +YW
Sbjct: 486 GLLSRVIIIRDRIRFHRFEGGSCSCGDYW 514



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 103/234 (44%), Gaps = 42/234 (17%)

Query: 2   VVKNSFAYDVFVK--NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEIL 59
           V++  F++ V +   N +I  +   G    A+ VF +  D DVV+WNSMI GYVRNG+  
Sbjct: 68  VIRQVFSWTVSLAGLNLVIDSFMRIGEYEIAKKVFCKMPDRDVVTWNSMIGGYVRNGKFE 127

Query: 60  EGLKLFDKMPQRN----DVSWNSILGGLVRFGS--------------------------- 88
           E L+ F  M   N      ++ S++    R G+                           
Sbjct: 128 EALRSFQAMLSSNVEPDKFTFASVITACARLGALNHAQWLHDLMVQKRIEVNFILSSALI 187

Query: 89  --------VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
                   ++ A  VF  + +  +  W  LI+G A +G   +A+ +F +M++ ++ P+S 
Sbjct: 188 DMYSKCGRIETAKEVFESVERNDVSVWNSLINGLAVHGLALDAMMVFSKMEAENVLPDSL 247

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQK-KCIKLDSILCAALIDMYAKCGSIDLA 193
             + +L AC+  G +  G   +  ++    IK       A++D+  + G +D A
Sbjct: 248 TFLGILKACSHCGLVKEGRKYFDLMENYYSIKPQLEHYGAMVDLLGRAGLLDEA 301



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 82/173 (47%), Gaps = 17/173 (9%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++V+     +  + ++LI  YS CGR+  A+ VF+  +  DV  WNS+ING   +G  L+
Sbjct: 170 LMVQKRIEVNFILSSALIDMYSKCGRIETAKEVFESVERNDVSVWNSLINGLAVHGLALD 229

Query: 61  GLKLFDKMPQRN----DVSWNSILGGLVRFGSVDDACRVFNQMP-----KRSLVSWVVLI 111
            + +F KM   N     +++  IL      G V +  + F+ M      K  L  +  ++
Sbjct: 230 AMMVFSKMEAENVLPDSLTFLGILKACSHCGLVKEGRKYFDLMENYYSIKPQLEHYGAMV 289

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC-----AQLGALDYGN 159
               + G   EA A+   + ++ +EP+  +   LLSAC      +LG +   N
Sbjct: 290 DLLGRAGLLDEAYAM---ITAMPMEPDVIVWRILLSACRTHRNTELGEVAVAN 339


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 201/548 (36%), Positives = 320/548 (58%), Gaps = 40/548 (7%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           K+     V +  +L+  Y+ CG +  AR VFD     + V+W+++I G+V    + +   
Sbjct: 266 KSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFL 325

Query: 64  LFDKMPQR----------------------------------------NDVSWNSILGGL 83
           LF  M  +                                        +  + NS+L   
Sbjct: 326 LFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMY 385

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
            + G +D A  +F++M  +  VS+  L+SG+ QNGR +EA  +F++MQ+ ++EP++A +V
Sbjct: 386 AKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMV 445

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           SL+ AC+ L AL +G   +  +  + +  ++ +C ALIDMYAKCG IDL+ QVF+    +
Sbjct: 446 SLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSR 505

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           D+ ++ + I G  ++G   EA  LF  M + G  PD +++I +LSACSH G V +G ++F
Sbjct: 506 DIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWF 565

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
           H M   +G+ P ++HY CMVDLL R G L+EA  FI SMP++ D  +W  LLGACRV++N
Sbjct: 566 HVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKN 625

Query: 324 AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE 383
            ++G+++  M+ E      G ++LLSNIY    + + A EVR   + +  K++PGCS IE
Sbjct: 626 IDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIE 685

Query: 384 LDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYH 443
           ++G +H F+ GD+SH ++ EIY+  + I+  IK  GY  +T  V+ D+EEEEKE  +  H
Sbjct: 686 INGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICH 745

Query: 444 SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
           SEKLA+A+G++       I + KN+R+C DCH+ +K +S V +R I +RD   +HHF++G
Sbjct: 746 SEKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKNG 805

Query: 504 SCSCLEYW 511
            CSC ++W
Sbjct: 806 QCSCGDFW 813



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/366 (26%), Positives = 162/366 (44%), Gaps = 58/366 (15%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNG------------- 56
           D+FV  +L+  Y  C  + DA  +F      D+V+WN+M+ GY  +G             
Sbjct: 159 DLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQ 218

Query: 57  -----------EILEGLKLFDKM-------------------PQRNDVS--------WNS 78
                       ++  L L  +                    P RN  S          +
Sbjct: 219 MQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTA 278

Query: 79  ILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD---L 135
           +L    + GS+  A RVF+ MP R+ V+W  LI GF    R  +A  LF+ M +     L
Sbjct: 279 LLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFL 338

Query: 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ 195
            P S  + S L ACA L  L  G  +++ + K  +  D     +L+ MYAK G ID A+ 
Sbjct: 339 SPTS--IASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIA 396

Query: 196 VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGW 255
           +F     KD  +Y++ + G   NG + EAF +F+ M++  + PD+ + ++++ ACSHL  
Sbjct: 397 LFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAA 456

Query: 256 VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
           ++ G    H    + G+  E      ++D+  + G ++ +      MP + D V W T++
Sbjct: 457 LQHG-RCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSR-DIVSWNTMI 514

Query: 316 GACRVH 321
               +H
Sbjct: 515 AGYGIH 520



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 96/348 (27%), Positives = 162/348 (46%), Gaps = 62/348 (17%)

Query: 25  GRVRDARWVFDESDDLDVVSWNSMINGYVRNGEIL--EGLKLFDKMPQRNDVSWN----- 77
           G +  A  +FD+    DV ++N +I  Y  +      +GL L+ +M  R+ V+ N     
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRM-LRHRVAPNNYTFP 129

Query: 78  ---------------------SILGGL--------------VRFGSVDDACRVFNQMPKR 102
                                +I  GL              V+   + DA  +F  MP R
Sbjct: 130 FALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPAR 189

Query: 103 SLVSWVVLISGFAQNGRPKEALA--LFREMQSLDLEPNSAILVSLLSACAQLGALDYGNW 160
            LV+W  +++G+A +G    A+A  L  +MQ   L PN++ LV+LL   AQ GAL  G  
Sbjct: 190 DLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTS 249

Query: 161 VYSYIQKKCIKLDS----------ILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
           V++Y  + C+  +           +L  AL+DMYAKCGS+  A +VF +   ++   +++
Sbjct: 250 VHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSA 309

Query: 211 AIFGLAMNGHSIEAFELFENMKSKG---ISPDSISYIAVLSACSHLGWVEKGFYYFHSMF 267
            I G  +     +AF LF+ M ++G   +SP SI+  + L AC+ L  +  G    H++ 
Sbjct: 310 LIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACASLDHLRMG-EQLHALL 366

Query: 268 DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
              G+  +L     ++ +  +AGL+++A      M +K D V +  L+
Sbjct: 367 AKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVK-DTVSYSALV 413



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 111/241 (46%), Gaps = 44/241 (18%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++ K+    D+   NSL+  Y+  G +  A  +FDE    D VS++++++GYV+NG   E
Sbjct: 365 LLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEE 424

Query: 61  GLKLFDKMPQ-----------------------------------RNDVSWNSILGGLV- 84
              +F KM                                     R   S  SI   L+ 
Sbjct: 425 AFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALID 484

Query: 85  ---RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G +D + +VFN MP R +VSW  +I+G+  +G  KEA ALF EM +L   P+   
Sbjct: 485 MYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVT 544

Query: 142 LVSLLSACAQLGALDYG-NW--VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH 198
            + LLSAC+  G +  G +W  V  +      +++  +C  ++D+ ++ G +D A +   
Sbjct: 545 FICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYIC--MVDLLSRGGFLDEAYEFIQ 602

Query: 199 S 199
           S
Sbjct: 603 S 603



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 108/244 (44%), Gaps = 16/244 (6%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEA--LALFREMQSLDLEPNSAILVS 144
           G +  A  +F+Q+P   + ++  LI  ++ +     A  L L+R M    + PN+     
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPF 130

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
            L AC+ L     G  ++ +     ++ D  +  AL+DMY KC  +  A  +F +   +D
Sbjct: 131 ALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARD 190

Query: 205 VSAYTSAIFGLAMNG--HSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           + A+ + + G A +G  H   A  L   M+   + P++ + +A+L   +  G + +G   
Sbjct: 191 LVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQG-TS 249

Query: 263 FHSMFDVHGIKPELDHYACMVD--LLGRA--------GLLEEAENFIASMPMKPDNVIWG 312
            H+      + P  +  + + D  LLG A        G L  A     +MP + + V W 
Sbjct: 250 VHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPAR-NEVTWS 308

Query: 313 TLLG 316
            L+G
Sbjct: 309 ALIG 312



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 83/177 (46%), Gaps = 16/177 (9%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+    A +  + N+LI  Y+ CGR+  +R VF+     D+VSWN+MI GY  +G   E 
Sbjct: 467 VIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEA 526

Query: 62  LKLFDKMPQ----RNDVSWNSILGGLVRFGSVDDACRVFNQM-------PKRSLVSWVVL 110
             LF +M       + V++  +L      G V +    F+ M       P+  +  ++ +
Sbjct: 527 TALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPR--MEHYICM 584

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK 167
           +   ++ G   EA   +  +QS+ L  +  + V+LL AC     +D G  V   IQ+
Sbjct: 585 VDLLSRGGFLDEA---YEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQE 638


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/466 (40%), Positives = 284/466 (60%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N+++  Y + G I    ++FD M  ++ VSWN+IL G V    +D A  VF +MP ++ +
Sbjct: 337 NALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNEL 396

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           SW+V++SG+   G  ++AL LF +M+S +++P        ++AC +LGAL +G  ++ +I
Sbjct: 397 SWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHI 456

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
            +   +  +    ALI MYA+CG++  A  +F    + D  ++ + I  L  +GH  EA 
Sbjct: 457 VQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREAL 516

Query: 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL 285
           ELF+ M ++GI PD IS++ VL+AC+H G V++GF YF SM    GI P  DHY  ++DL
Sbjct: 517 ELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTRLIDL 576

Query: 286 LGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRY 345
           LGRAG + EA + I +MP +P   IW  +L  CR   + E+G    + L +    HDG Y
Sbjct: 577 LGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTY 636

Query: 346 ILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIY 405
           ILLSN Y       +A  VRK MR R +K+ PGCS IE    VH FL GD  H +  E+Y
Sbjct: 637 ILLSNTYSAAGCWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFLVGDTKHPEAHEVY 696

Query: 406 QFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIV 465
           +F E +  K++  GY  +T+ V+ D+E  +KE ++  HSE+LA+ FGL+   PG+ + ++
Sbjct: 697 KFLEMVGAKMRKLGYVPDTKVVLHDMEPHQKEHILFAHSERLAVGFGLLNLPPGATVTVL 756

Query: 466 KNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           KN+RIC DCH+A+  +SK   R+I +RD + +HHF+DG CSC  YW
Sbjct: 757 KNLRICDDCHAAIMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 802



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 132/294 (44%), Gaps = 37/294 (12%)

Query: 63  KLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKE 122
           K+ D+MP ++D++W +++ G VR G V  A  VF ++  +  V W  +ISG+  +G   E
Sbjct: 218 KVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVE 277

Query: 123 ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI---QKKCIKLDSI-LCA 178
           A  LFR M    +  +     S+LSACA +G   +G  V+  I   Q   +   ++ +  
Sbjct: 278 AFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNN 337

Query: 179 ALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS---------------------------- 210
           AL+  Y+KCG+I +A ++F +   KDV ++ +                            
Sbjct: 338 ALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELS 397

Query: 211 ---AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMF 267
               + G    G + +A +LF  M+S+ + P   +Y   ++AC  LG ++ G    H   
Sbjct: 398 WMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHG-KQLHGHI 456

Query: 268 DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
              G +        ++ +  R G ++EA      MP   D+V W  ++ A   H
Sbjct: 457 VQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMP-NIDSVSWNAMISALGQH 509


>gi|449446363|ref|XP_004140941.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/437 (43%), Positives = 287/437 (65%), Gaps = 4/437 (0%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQ-SLDL 135
            ++L    + G +D A ++F++MP+  + SW  LI+GFAQ  RP +A+  F+ M+   +L
Sbjct: 142 TTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQGSRPADAIMTFKRMKVDGNL 201

Query: 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ 195
            PN+  +   L AC+QLGAL  G  V+ YI ++ +  +  +C  +IDMYAKCGS+D A  
Sbjct: 202 RPNAVTVQGALLACSQLGALKEGESVHKYIVEEKLNSNVQVCNVVIDMYAKCGSMDKAYW 261

Query: 196 VFHSYG-DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
           VF +   DK +  + + I   AM+G   +A +LFE +   G+SPD++SY+AVL AC+H G
Sbjct: 262 VFENMRCDKSLITWNTMIMAFAMHGDGHKALDLFEKLGRSGMSPDAVSYLAVLCACNHAG 321

Query: 255 WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTL 314
            VE G   F+SM    G++P + HY  MVDLLGRAG L+EA + ++S+P  P+ V+W TL
Sbjct: 322 LVEDGLKLFNSMTQ-RGLEPNIKHYGSMVDLLGRAGRLKEAYDIVSSLPF-PNMVLWQTL 379

Query: 315 LGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIK 374
           LGACR + + EM +     L+E      G ++LLSN+Y    + ++   VR  MR+R +K
Sbjct: 380 LGACRTYGDVEMAELASRKLVEMGFISCGDFVLLSNVYAARQRWDDVGRVRDAMRRRDVK 439

Query: 375 RAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEE 434
           + PG S IE+ G +++F+ GD+SH   +EIY   +EI  +IK YGY+ +T +V+ DI +E
Sbjct: 440 KTPGFSYIEIKGKMYKFVNGDQSHSSCREIYAKLDEINLRIKAYGYSADTSNVLHDIGDE 499

Query: 435 EKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDR 494
           +KE  + YHSEKLA+AFGL CT+ G+ I+++KN+RIC DCH  +KL+SK++ R+I +RDR
Sbjct: 500 DKENALCYHSEKLAVAFGLTCTEEGTPIQVIKNLRICGDCHVVIKLISKIYIREIIVRDR 559

Query: 495 KHYHHFEDGSCSCLEYW 511
             +H F++G CSC +YW
Sbjct: 560 TRFHRFKEGLCSCKDYW 576



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 112/245 (45%), Gaps = 4/245 (1%)

Query: 80  LGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD-LEPN 138
           L  +  FG +  A  +F  +P  S   W  +I G A +  P  A+  +R M + + L   
Sbjct: 42  LCAISSFGDLSYALHIFRYIPYPSTNDWNAVIRGTALSSDPANAVFWYRAMAASNGLHRI 101

Query: 139 SAILVSL-LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVF 197
            A+  S  L ACA+  A      ++S + +     D +L   L+D YAK G +DLA ++F
Sbjct: 102 DALTCSFALKACARALARSEAIQLHSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLF 161

Query: 198 HSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG-ISPDSISYIAVLSACSHLGWV 256
                 D++++ + I G A      +A   F+ MK  G + P++++    L ACS LG +
Sbjct: 162 DEMPQPDIASWNALIAGFAQGSRPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGAL 221

Query: 257 EKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLG 316
           ++G    H       +   +     ++D+  + G +++A     +M      + W T++ 
Sbjct: 222 KEG-ESVHKYIVEEKLNSNVQVCNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIM 280

Query: 317 ACRVH 321
           A  +H
Sbjct: 281 AFAMH 285



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/239 (20%), Positives = 107/239 (44%), Gaps = 41/239 (17%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++  F  DV ++ +L+  Y+  G +  A+ +FDE    D+ SWN++I G+ +     + 
Sbjct: 129 LLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQGSRPADA 188

Query: 62  LKLFDKMPQRNDVSWNSI-----------LGGL--------------------------- 83
           +  F +M    ++  N++           LG L                           
Sbjct: 189 IMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEGESVHKYIVEEKLNSNVQVCNVVID 248

Query: 84  --VRFGSVDDACRVFNQMP-KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
              + GS+D A  VF  M   +SL++W  +I  FA +G   +AL LF ++    + P++ 
Sbjct: 249 MYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHGDGHKALDLFEKLGRSGMSPDAV 308

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
             +++L AC   G ++ G  +++ + ++ ++ +     +++D+  + G +  A  +  S
Sbjct: 309 SYLAVLCACNHAGLVEDGLKLFNSMTQRGLEPNIKHYGSMVDLLGRAGRLKEAYDIVSS 367


>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
          Length = 639

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/541 (39%), Positives = 316/541 (58%), Gaps = 39/541 (7%)

Query: 8   AYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVR-NGEILEGLKLFD 66
           A  +FV NSL   Y+  G + DA  +FD     +VV+W +++      +G   E L+   
Sbjct: 101 AGGLFVSNSLASMYAKFGLLDDALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLV 160

Query: 67  KMPQ----RNDVSWNSILG------------------GL--------------VRFGSVD 90
            M +     N  +++S+LG                  GL              V+ G +D
Sbjct: 161 AMRRDGVAPNAYTFSSVLGACTTPGMLTAVHASTVKAGLDSDVFVRSSLIDAYVKLGDLD 220

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
              RVF++M  R LV W  +I+GFAQ+G    A+ LF  M+      N   L S+L AC 
Sbjct: 221 GGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACT 280

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
            +  L+ G  V++++ K     D IL  AL+DMY KCGS++ A  +FH    +DV ++++
Sbjct: 281 GMVMLEAGRQVHAHVLK--YDRDLILHNALLDMYCKCGSLEDADALFHRMPQRDVISWST 338

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            + GLA NG S+EA  +F+ MKS+G++P+ ++ + VL ACSH G VE G++YF SM  + 
Sbjct: 339 MVSGLAQNGKSVEALRVFDLMKSQGVAPNHVTMVGVLFACSHAGLVEDGWHYFRSMKRLF 398

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
           GI+PE +H+ CMVDLLGRAG L+EA  FI  M ++PD+VIW TLLGACR+H+NA +    
Sbjct: 399 GIQPEREHHNCMVDLLGRAGKLDEAVEFIHGMSLEPDSVIWRTLLGACRMHKNASLAAYA 458

Query: 331 GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHE 390
              +++ + +  G  +LLSN Y +  +  +AE+  K MR R +++ PG S IEL+  VH 
Sbjct: 459 AREILKLEPDDQGARVLLSNTYADLRQWTDAEKPWKAMRDRGMRKEPGRSWIELEKRVHV 518

Query: 391 FLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALA 450
           F+AGD SH  +  I Q    ++ +IK+ GY  +T  V+ D+  E+KE ++ YHSEK+A+ 
Sbjct: 519 FIAGDLSHPCSDTIIQELNRLIGRIKSLGYVPQTEFVLQDLPTEQKEDLLKYHSEKMAIV 578

Query: 451 FGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEY 510
           FG +    G  IRI+KN+RIC DCH+  KLVSK   R I IRD   +HHF+DG+CSC +Y
Sbjct: 579 FGTMHAVDGKPIRIMKNLRICGDCHAFAKLVSKSEGRVIVIRDPVRFHHFQDGACSCGDY 638

Query: 511 W 511
           W
Sbjct: 639 W 639



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 116/236 (49%), Gaps = 40/236 (16%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
            VK     DVFV++SLI  Y   G +   R VFDE    D+V WNS+I G+ ++G+ +  
Sbjct: 194 TVKAGLDSDVFVRSSLIDAYVKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGA 253

Query: 62  LKLFDKMP-------------------------------------QRNDVSWNSILGGLV 84
           ++LF +M                                       R+ +  N++L    
Sbjct: 254 IELFMRMKDAGFSSNQGTLTSVLRACTGMVMLEAGRQVHAHVLKYDRDLILHNALLDMYC 313

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
           + GS++DA  +F++MP+R ++SW  ++SG AQNG+  EAL +F  M+S  + PN   +V 
Sbjct: 314 KCGSLEDADALFHRMPQRDVISWSTMVSGLAQNGKSVEALRVFDLMKSQGVAPNHVTMVG 373

Query: 145 LLSACAQLGALDYGNWVYSYIQKKC--IKLDSILCAALIDMYAKCGSIDLAMQVFH 198
           +L AC+  G ++ G W Y    K+   I+ +      ++D+  + G +D A++  H
Sbjct: 374 VLFACSHAGLVEDG-WHYFRSMKRLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIH 428



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 85/182 (46%), Gaps = 11/182 (6%)

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKK-CIKLDS----ILCAALIDMYAKCGSIDLAMQV 196
           L  L+  C + G  D+G  ++ +++    +  D      +  +L  MYAK G +D A+++
Sbjct: 67  LTRLVKLCVRHGTADHGRLIHRHVEAHGPLPHDGAGGLFVSNSLASMYAKFGLLDDALRM 126

Query: 197 FHSYGDKDVSAYTSAIFGLA-MNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGW 255
           F     ++V  +T+ +  LA  +G   EA      M+  G++P++ ++ +VL AC+  G 
Sbjct: 127 FDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGVAPNAYTFSSVLGACTTPGM 186

Query: 256 VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
           +       H+     G+  ++   + ++D   + G L+        M  + D V+W +++
Sbjct: 187 LTA----VHASTVKAGLDSDVFVRSSLIDAYVKLGDLDGGRRVFDEMVTR-DLVVWNSII 241

Query: 316 GA 317
             
Sbjct: 242 AG 243


>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
          Length = 440

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 191/435 (43%), Positives = 275/435 (63%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136
           N+++    + G  D A  VF +M  + ++SW  L++G   NG  +EAL LF EM+ + + 
Sbjct: 6   NALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIH 65

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
           P+  ++ ++LSACA+L  L++G  V++   K  +     +  +L+ MYAKCG I+ A +V
Sbjct: 66  PDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKV 125

Query: 197 FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWV 256
           F S   +DV  +T+ I G A NG   E+   + BM + G+ PD I++I +L ACSH G V
Sbjct: 126 FDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAGLV 185

Query: 257 EKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLG 316
           E G  YF SM +V+GIKP  +HYACM+DLLGR+G L EA+  +  M ++PD  +W  LL 
Sbjct: 186 EHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLA 245

Query: 317 ACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRA 376
           ACRVH N E+G+R  N L E +  +   Y+LLSN+Y    K E A + R+ M+ R + + 
Sbjct: 246 ACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVSKE 305

Query: 377 PGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEK 436
           PGCS IE+   VH F++ DRSH +T EIY   +EI+  IK  GY  +    + D++EE K
Sbjct: 306 PGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFALHDMDEEGK 365

Query: 437 ETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKH 496
           E  + YHSEKLA+AFGL+   PG+ IRI KN+RIC DCH+AMK VS VF R + +RD   
Sbjct: 366 ELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTAMKYVSGVFHRHVILRDSNC 425

Query: 497 YHHFEDGSCSCLEYW 511
           +HHF +G+CSC +YW
Sbjct: 426 FHHFREGACSCSDYW 440



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 142/325 (43%), Gaps = 78/325 (24%)

Query: 12  FVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM--- 68
            V N+L+  Y+  G    A  VF++  D DV+SW S++ G V NG   E L+LF +M   
Sbjct: 3   LVNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIM 62

Query: 69  ---PQRNDVSW---------------------------------NSILGGLVRFGSVDDA 92
              P +  ++                                  NS++    + G ++DA
Sbjct: 63  GIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDA 122

Query: 93  CRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQL 152
            +VF+ M  + +++W  LI G+AQNGR +E+L  + +M +  ++P+    + LL AC+  
Sbjct: 123 NKVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHA 182

Query: 153 GALDYGNWVYSYIQK-KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSA 211
           G +++G   +  +++   IK      A +ID+  + G +                     
Sbjct: 183 GLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKL--------------------- 221

Query: 212 IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG 271
                     +EA EL   M    + PD+  + A+L+AC   G VE G    +++F+   
Sbjct: 222 ----------MEAKELLNQM---AVQPDATVWKALLAACRVHGNVELGERAANNLFE--- 265

Query: 272 IKPE-LDHYACMVDLLGRAGLLEEA 295
           ++P+    Y  + +L   AG  EEA
Sbjct: 266 LEPKNAVPYVLLSNLYSAAGKWEEA 290



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 79/165 (47%), Gaps = 12/165 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +K+     + V NSL+  Y+ CG + DA  VFD  +  DV++W ++I GY +NG   E L
Sbjct: 95  LKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQNGRGRESL 154

Query: 63  KLFDKM----PQRNDVSWNSILGGLVRFGSVDDACRVFNQMP-----KRSLVSWVVLISG 113
             ++ M     + + +++  +L      G V+     F  M      K     +  +I  
Sbjct: 155 NFYNBMIASGVKPDFITFIGLLFACSHAGLVEHGRSYFQSMEEVYGIKPGPEHYACMIDL 214

Query: 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
             ++G+  EA  L  +M    ++P++ +  +LL+AC   G ++ G
Sbjct: 215 LGRSGKLMEAKELLNQMA---VQPDATVWKALLAACRVHGNVELG 256


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 197/469 (42%), Positives = 290/469 (61%), Gaps = 5/469 (1%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           NS++  Y + G+  E   +F+KMP ++ VSWN++L G V  G + +A  +F +M +++++
Sbjct: 324 NSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNIL 383

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           SW+++ISG A+NG  +E L LF  M+    EP        + +CA LGA   G   ++ +
Sbjct: 384 SWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQL 443

Query: 166 QKKCIKLDSILCA--ALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIE 223
            K  I  DS L A  ALI MYAKCG ++ A QVF +    D  ++ + I  L  +GH +E
Sbjct: 444 VK--IGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAALGQHGHGVE 501

Query: 224 AFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMV 283
           A +++E M  KGI PD I+++ VL+ACSH G V++G  YF+SM  V+ I P  DHYA ++
Sbjct: 502 AVDVYEEMLKKGIRPDRITFLTVLTACSHAGLVDQGRKYFNSMETVYRIPPGADHYARLI 561

Query: 284 DLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDG 343
           DLL R+G   EAE+ I S+P KP   IW  LL  CRVH N E+G    + L      HDG
Sbjct: 562 DLLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDG 621

Query: 344 RYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQE 403
            Y+LLSN+Y  T + E    VRK MR R +K+   CS IE++  VH FL  D SH + + 
Sbjct: 622 TYMLLSNMYAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEA 681

Query: 404 IYQFWEEIVKKIKNYGYNVETRSVMFDIEEE-EKETVIGYHSEKLALAFGLICTKPGSVI 462
           +Y++ +++ K+++  GY  +T  V+ D+E +  KE ++  HSEK+A+AFGL+   PG+ I
Sbjct: 682 VYKYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTI 741

Query: 463 RIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           RI KN+R C DCH+  + +SKV +R I +RDRK +HHF +G CSC  +W
Sbjct: 742 RIFKNLRTCGDCHNFFRFLSKVVQRDIILRDRKRFHHFRNGECSCGNFW 790



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 131/294 (44%), Gaps = 41/294 (13%)

Query: 63  KLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKR-SLVSWVVLISGFAQNGRPK 121
           K+FD +P++++ SW +++ G V+ G  D    +   M +   LV++  +ISG+   G  +
Sbjct: 209 KVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQ 268

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKK---CIKLDSILCA 178
           EAL + R M S  +E +     S++ ACA    L  G  V++Y+ ++       D+    
Sbjct: 269 EALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRREDFSFHFDN---- 324

Query: 179 ALIDMYAKCGSIDLAMQVFHSYGDKD-------VSAYTSA-------------------- 211
           +L+ +Y KCG  + A  +F     KD       +S Y S+                    
Sbjct: 325 SLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILS 384

Query: 212 ----IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMF 267
               I GLA NG   E  +LF  MK +G  P   ++   + +C+ LG    G   FH+  
Sbjct: 385 WMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNG-QQFHAQL 443

Query: 268 DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
              G    L     ++ +  + G++EEA+    +MP   D+V W  L+ A   H
Sbjct: 444 VKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCL-DSVSWNALIAALGQH 496



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 137/326 (42%), Gaps = 19/326 (5%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++   F     + N LI  Y     +  AR +FDE  + D ++  +M++GY  +G+I   
Sbjct: 40  IITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEPDKIARTTMVSGYCASGDIALA 99

Query: 62  LKLFDKMP--QRNDVSWNSILGGLVR----FGSVDDACRVFNQMPKRSLVSWVVLISGFA 115
             +F++ P   R+ V +N+++ G       + +++  C++ ++  K    ++  +++G A
Sbjct: 100 RSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDFTYASVLAGLA 159

Query: 116 QNGRPKEALALFREMQSLD----LEPNSAILVSLLSACAQLGALDY-GNWVYSYIQKKCI 170
                ++    F           +   S  LVS+ S CA   +L +    V+  I +K  
Sbjct: 160 LVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFDDIPEK-- 217

Query: 171 KLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK-DVSAYTSAIFGLAMNGHSIEAFELFE 229
             D      ++  Y K G  DL  ++     +   + AY + I G    G   EA E+  
Sbjct: 218 --DERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVR 275

Query: 230 NMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRA 289
            M S GI  D  +Y +V+ AC++   ++ G      +          D+   +V L  + 
Sbjct: 276 RMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRREDFSFHFDN--SLVTLYYKC 333

Query: 290 GLLEEAENFIASMPMKPDNVIWGTLL 315
           G   EA      MP K D V W  LL
Sbjct: 334 GKFNEARAIFEKMPAK-DLVSWNALL 358



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 84/166 (50%), Gaps = 12/166 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +VK  F   +   N+LI  Y+ CG V +A+ VF     LD VSWN++I    ++G  +E 
Sbjct: 443 LVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAALGQHGHGVEA 502

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLIS 112
           + ++++M ++    + +++ ++L      G VD   + FN M     +      +  LI 
Sbjct: 503 VDVYEEMLKKGIRPDRITFLTVLTACSHAGLVDQGRKYFNSMETVYRIPPGADHYARLID 562

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
              ++G+  EA ++   ++SL  +P + I  +LLS C   G ++ G
Sbjct: 563 LLCRSGKFSEAESI---IESLPFKPTAEIWEALLSGCRVHGNMELG 605



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 78/199 (39%), Gaps = 11/199 (5%)

Query: 123 ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182
           A A+   + +   +P++ IL  L+    +   LDY   ++  I +     D I    ++ 
Sbjct: 33  ARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEP----DKIARTTMVS 88

Query: 183 MYAKCGSIDLAMQVFH--SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
            Y   G I LA  VF       +D   Y + I G + N     A  LF  MK +G  PD 
Sbjct: 89  GYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDD 148

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAG----LLEEAE 296
            +Y +VL+  + +   EK    FH+     G          +V +  R      LL  A 
Sbjct: 149 FTYASVLAGLALVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSAR 208

Query: 297 NFIASMPMKPDNVIWGTLL 315
                +P K D   W T++
Sbjct: 209 KVFDDIPEK-DERSWTTMM 226


>gi|449494077|ref|XP_004159440.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/437 (43%), Positives = 287/437 (65%), Gaps = 4/437 (0%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQ-SLDL 135
            ++L    + G +D A ++F++MP+  + SW  LI+GFAQ  RP +A+  F+ M+   +L
Sbjct: 142 TTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQGSRPADAIMTFKRMKVDGNL 201

Query: 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ 195
            PN+  +   L AC+QLGAL  G  V+ YI ++ +  +  +C  +IDMYAKCGS+D A  
Sbjct: 202 RPNAVTVQGALLACSQLGALKEGESVHKYIVEEKLDSNVQVCNVVIDMYAKCGSMDKAYW 261

Query: 196 VFHSYG-DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
           VF +   DK +  + + I   AM+G   +A +LFE +   G+SPD++SY+AVL AC+H G
Sbjct: 262 VFENMRCDKSLITWNTMIMAFAMHGDGHKALDLFEKLGRSGMSPDAVSYLAVLCACNHAG 321

Query: 255 WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTL 314
            VE G   F+SM    G++P + HY  MVDLLGRAG L+EA + ++S+P  P+ V+W TL
Sbjct: 322 LVEDGLKLFNSMTQ-RGLEPNIKHYGSMVDLLGRAGRLKEAYDIVSSLPF-PNMVLWQTL 379

Query: 315 LGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIK 374
           LGACR + + EM +     L+E      G ++LLSN+Y    + ++   VR  MR+R +K
Sbjct: 380 LGACRTYGDVEMAELASRKLVEMGFISCGXFVLLSNVYAARQRWDDVGRVRDAMRRRDVK 439

Query: 375 RAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEE 434
           + PG S IE+ G +++F+ GD+SH   +EIY   +EI  +IK YGY+ +T +V+ DI +E
Sbjct: 440 KTPGFSYIEIKGKMYKFVNGDQSHSSCREIYAKLDEINLRIKAYGYSADTSNVLHDIGDE 499

Query: 435 EKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDR 494
           +KE  + YHSEKLA+AFGL CT+ G+ I+++KN+RIC DCH  +KL+SK++ R+I +RDR
Sbjct: 500 DKENALCYHSEKLAVAFGLTCTEEGTPIQVIKNLRICGDCHVVIKLISKIYIREIIVRDR 559

Query: 495 KHYHHFEDGSCSCLEYW 511
             +H F++G CSC +YW
Sbjct: 560 TRFHRFKEGLCSCKDYW 576



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 112/245 (45%), Gaps = 4/245 (1%)

Query: 80  LGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD-LEPN 138
           L  +  FG +  A  +F  +P  S   W  +I G A +  P  A+  +R M + + L   
Sbjct: 42  LCAISSFGDLSYALHIFRYIPYPSTNDWNAVIRGTALSSDPANAVFWYRAMAASNGLHRI 101

Query: 139 SAILVSL-LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVF 197
            A+  S  L ACA+  A      ++S + +     D +L   L+D YAK G +DLA ++F
Sbjct: 102 DALTCSFALKACARALARSEAIQLHSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLF 161

Query: 198 HSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG-ISPDSISYIAVLSACSHLGWV 256
                 D++++ + I G A      +A   F+ MK  G + P++++    L ACS LG +
Sbjct: 162 DEMPQPDIASWNALIAGFAQGSRPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGAL 221

Query: 257 EKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLG 316
           ++G    H       +   +     ++D+  + G +++A     +M      + W T++ 
Sbjct: 222 KEG-ESVHKYIVEEKLDSNVQVCNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIM 280

Query: 317 ACRVH 321
           A  +H
Sbjct: 281 AFAMH 285



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/239 (20%), Positives = 107/239 (44%), Gaps = 41/239 (17%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++  F  DV ++ +L+  Y+  G +  A+ +FDE    D+ SWN++I G+ +     + 
Sbjct: 129 LLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQGSRPADA 188

Query: 62  LKLFDKMPQRNDVSWNSI-----------LGGL--------------------------- 83
           +  F +M    ++  N++           LG L                           
Sbjct: 189 IMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEGESVHKYIVEEKLDSNVQVCNVVID 248

Query: 84  --VRFGSVDDACRVFNQMP-KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
              + GS+D A  VF  M   +SL++W  +I  FA +G   +AL LF ++    + P++ 
Sbjct: 249 MYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHGDGHKALDLFEKLGRSGMSPDAV 308

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
             +++L AC   G ++ G  +++ + ++ ++ +     +++D+  + G +  A  +  S
Sbjct: 309 SYLAVLCACNHAGLVEDGLKLFNSMTQRGLEPNIKHYGSMVDLLGRAGRLKEAYDIVSS 367


>gi|225428400|ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
 gi|297744424|emb|CBI37686.3| unnamed protein product [Vitis vinifera]
          Length = 571

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/460 (44%), Positives = 293/460 (63%), Gaps = 3/460 (0%)

Query: 54  RNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISG 113
           R G+ L GL     +     VS N ++      G    A +VF +M  R +VSW  +I G
Sbjct: 113 RVGKQLHGLIYKSGLESDRYVS-NGLIHMYSSCGKSGRAYKVFGKMRDRDVVSWTSMIDG 171

Query: 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD 173
           F  + R  EA+ LF EM    +EPN A +VS+L ACA  GA+  G  V   I+++ I L+
Sbjct: 172 FVDDDRALEAIRLFEEMVEDGVEPNEATVVSVLRACADAGAVGMGRRVQGVIEERKIGLE 231

Query: 174 SILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKS 233
           + +  ALIDMYAKCGSI  A +VF    +KDV A+T+ I GLA +G   EA  LF+ M+S
Sbjct: 232 ANVRTALIDMYAKCGSIGSARKVFDGIVNKDVFAWTAMISGLANHGLCEEAVTLFDQMES 291

Query: 234 KGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLE 293
            G+ PD  +  AVLSAC + GW  +GF YF+SM+  +GIKP + HY CMVDLL R G L+
Sbjct: 292 FGLRPDERTMTAVLSACRNAGWFSEGFAYFNSMWCKYGIKPTIQHYGCMVDLLARTGHLD 351

Query: 294 EAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI--GNMLIESDQNHDGRYILLSNI 351
           EAE FI  MP++PD V+W TL+ A +VH + +  +++     L++ D +  G Y+LL N+
Sbjct: 352 EAEEFIRKMPIEPDVVLWRTLIWASKVHGDIDRSEQLMKDRGLLKMDSDDCGSYVLLGNV 411

Query: 352 YVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEI 411
           Y    K  +  ++R+ M ++ + + PGCS IE+DG+VHEF AGD  H + ++IY   +E+
Sbjct: 412 YASAGKWHDKAKMRELMNQKGLSKPPGCSRIEVDGLVHEFAAGDSGHIEAEKIYAKLDEV 471

Query: 412 VKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRIC 471
            +++K  GY+ +   V+ +I+ +EK   + +HSEKLA+AFGLI T PG+ IRIVKN+R C
Sbjct: 472 EERLKAEGYHPKLSEVLLEIDNKEKAFQLRHHSEKLAVAFGLIKTSPGTEIRIVKNLRSC 531

Query: 472 SDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            DCHS +KL+SK++++ I +RDR  +HHF +G CSC +YW
Sbjct: 532 EDCHSVLKLISKIYQQDIIVRDRIRFHHFINGDCSCKDYW 571



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 140/305 (45%), Gaps = 49/305 (16%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++ K+    D +V N LI  YS CG+   A  VF +  D DVVSW SMI+G+V +   LE
Sbjct: 121 LIYKSGLESDRYVSNGLIHMYSSCGKSGRAYKVFGKMRDRDVVSWTSMIDGFVDDDRALE 180

Query: 61  GLKLFDKM----PQRNDVSWNSIL-----GGLV--------------------------- 84
            ++LF++M     + N+ +  S+L      G V                           
Sbjct: 181 AIRLFEEMVEDGVEPNEATVVSVLRACADAGAVGMGRRVQGVIEERKIGLEANVRTALID 240

Query: 85  ---RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + GS+  A +VF+ +  + + +W  +ISG A +G  +EA+ LF +M+S  L P+   
Sbjct: 241 MYAKCGSIGSARKVFDGIVNKDVFAWTAMISGLANHGLCEEAVTLFDQMESFGLRPDERT 300

Query: 142 LVSLLSACAQLGALDYG-NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
           + ++LSAC   G    G  +  S   K  IK        ++D+ A+ G +D A +     
Sbjct: 301 MTAVLSACRNAGWFSEGFAYFNSMWCKYGIKPTIQHYGCMVDLLARTGHLDEAEEFIRKM 360

Query: 201 G-DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGI----SPDSISYIAVLSACSHLG- 254
             + DV  + + I+   ++G    + +L   MK +G+    S D  SY+ + +  +  G 
Sbjct: 361 PIEPDVVLWRTLIWASKVHGDIDRSEQL---MKDRGLLKMDSDDCGSYVLLGNVYASAGK 417

Query: 255 WVEKG 259
           W +K 
Sbjct: 418 WHDKA 422



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 112/262 (42%), Gaps = 4/262 (1%)

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
           LK  D   Q  +++       L   G +  A  + N +  ++      +I  ++Q   P 
Sbjct: 17  LKSPDPKKQTRNLTPLFTFAALSPAGDLTYAHLILNSLSTQNSFFHNTMIRAYSQTPDPT 76

Query: 122 EALALFREM--QSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
           +AL LF  M  Q     P+      LL +CA+L     G  ++  I K  ++ D  +   
Sbjct: 77  QALHLFLSMLCQPTSPRPDKFTYPFLLKSCARLKQPRVGKQLHGLIYKSGLESDRYVSNG 136

Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
           LI MY+ CG    A +VF    D+DV ++TS I G   +  ++EA  LFE M   G+ P+
Sbjct: 137 LIHMYSSCGKSGRAYKVFGKMRDRDVVSWTSMIDGFVDDDRALEAIRLFEEMVEDGVEPN 196

Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI 299
             + ++VL AC+  G V  G      + +   I  E +    ++D+  + G +  A    
Sbjct: 197 EATVVSVLRACADAGAVGMG-RRVQGVIEERKIGLEANVRTALIDMYAKCGSIGSARKVF 255

Query: 300 ASMPMKPDNVIWGTLLGACRVH 321
             +  K D   W  ++     H
Sbjct: 256 DGIVNK-DVFAWTAMISGLANH 276


>gi|220061995|gb|ACL79585.1| pentatricopeptide repeat protein [Oryza sativa Japonica Group]
          Length = 589

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 195/444 (43%), Positives = 279/444 (62%), Gaps = 15/444 (3%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALF-------RE 129
            ++L    + G +  A +VF++M  R + +W  L++G AQ   P  ALALF       +E
Sbjct: 152 TTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGLAQGTEPNLALALFHRLANSFQE 211

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
           + S + EPN   +V++LSACAQ+G L  G +V+ + +K  +  +  +C +LIDMY+KCGS
Sbjct: 212 LPSRE-EPNEVTIVAVLSACAQIGLLKDGMYVHEFAKKFGLDRNVRVCNSLIDMYSKCGS 270

Query: 190 IDLAMQVFHSYG--DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVL 247
           +  A+ VFHS    D+ + +Y +AI   +M+GH  +A  LF+ M ++ I PD ++Y+AVL
Sbjct: 271 LSRALDVFHSIKPEDRTLVSYNAAIQAHSMHGHGGDALRLFDEMPTR-IEPDGVTYLAVL 329

Query: 248 SACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPD 307
             C+H G V+ G   F+SM     + P + HY  +VDLLGRAG L EA + + SMP   D
Sbjct: 330 CGCNHSGLVDDGLRVFNSM----RVAPNMKHYGTIVDLLGRAGRLTEAYDTVISMPFPAD 385

Query: 308 NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKT 367
            V+W TLLGA ++H   E+ +   N L E   N DG Y+LLSN+Y    +  +   VR T
Sbjct: 386 IVLWQTLLGAAKMHGVVELAELAANKLAELGSNVDGDYVLLSNVYASKARWMDVGRVRDT 445

Query: 368 MRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSV 427
           MR   +++ PG S  E+DGV+H+F+ GD+ H + QEIY+  E+IV +I   GY  ET +V
Sbjct: 446 MRSNDVRKVPGFSYTEIDGVMHKFINGDKEHPRWQEIYRALEDIVSRISELGYEPETSNV 505

Query: 428 MFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKR 487
           + DI EEEK+  + YHSEKLA+AFGLI T PG  +R++KN+RIC DCH   KL+SK + R
Sbjct: 506 LHDIGEEEKQYALCYHSEKLAIAFGLIATPPGETLRVIKNLRICGDCHVVAKLISKAYGR 565

Query: 488 KISIRDRKHYHHFEDGSCSCLEYW 511
            I IRDR  +H FEDG CSC +YW
Sbjct: 566 VIVIRDRARFHRFEDGQCSCRDYW 589



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 85/192 (44%), Gaps = 9/192 (4%)

Query: 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ 195
            P++  L   L A A+         +++ + +  +  D  L   L+D YAKCG +  A +
Sbjct: 110 RPDALSLSFALKASARCSDAHTTVQLHALVLRLGVAADVRLLTTLLDSYAKCGDLASARK 169

Query: 196 VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKS------KGISPDSISYIAVLSA 249
           VF     +DV+ + S + GLA       A  LF  + +          P+ ++ +AVLSA
Sbjct: 170 VFDEMTVRDVATWNSLLAGLAQGTEPNLALALFHRLANSFQELPSREEPNEVTIVAVLSA 229

Query: 250 CSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNV 309
           C+ +G ++ G  Y H      G+   +     ++D+  + G L  A +   S  +KP++ 
Sbjct: 230 CAQIGLLKDGM-YVHEFAKKFGLDRNVRVCNSLIDMYSKCGSLSRALDVFHS--IKPEDR 286

Query: 310 IWGTLLGACRVH 321
              +   A + H
Sbjct: 287 TLVSYNAAIQAH 298


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 216/537 (40%), Positives = 303/537 (56%), Gaps = 38/537 (7%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVR---NGEILEGLKLFDK 67
           +F+ N LI  Y     + DA  +FD+    +V+SW +MI+ Y +   + + LE L L  +
Sbjct: 96  MFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLR 155

Query: 68  MPQRNDV-SWNSILGG--------------------------------LVRFGSVDDACR 94
              R +V +++S+L                                    + G  +DA  
Sbjct: 156 DNVRPNVYTYSSVLRSCNGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALS 215

Query: 95  VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA 154
           VF++M     + W  +I GFAQN R   AL LF+ M+        A L S+L AC  L  
Sbjct: 216 VFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLAL 275

Query: 155 LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFG 214
           L+ G   + +I K     D IL  AL+DMY KCGS++ A++VF+   ++DV  +++ I G
Sbjct: 276 LELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISG 333

Query: 215 LAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP 274
           LA NG+S EA +LFE MKS G  P+ I+ + VL ACSH G +E G+YYF SM  ++GI P
Sbjct: 334 LAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDP 393

Query: 275 ELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNML 334
             +HY CM+DLLG+AG L++A   +  M  +PD V W TLLGACRV RN  + +     +
Sbjct: 394 VREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKV 453

Query: 335 IESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAG 394
           I  D    G Y LLSNIY  + K ++ EE+R  MR R IK+ PGCS IE++  +H F+ G
Sbjct: 454 IALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIG 513

Query: 395 DRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLI 454
           D SH +  E+ +   +++ ++   GY  ET  V+ D+E E+ E  + +HSEKLALAFGL+
Sbjct: 514 DNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLM 573

Query: 455 CTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
                 VIRI KN+RIC DCH   KL SK+  R I IRD   YHHF+DG CSC +YW
Sbjct: 574 TLPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRDPIRYHHFQDGKCSCGDYW 630



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 115/236 (48%), Gaps = 40/236 (16%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K     DVFV+++LI  ++  G   DA  VFDE    D + WNS+I G+ +N      
Sbjct: 185 IIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVA 244

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRF----------------------------------- 86
           L+LF +M +   ++  + L  ++R                                    
Sbjct: 245 LELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLILNNALVDMYC 304

Query: 87  --GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
             GS++DA RVFNQM +R +++W  +ISG AQNG  +EAL LF  M+S   +PN   +V 
Sbjct: 305 KCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVG 364

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSIL--CAALIDMYAKCGSIDLAMQVFH 198
           +L AC+  G L+ G W Y    KK   +D +      +ID+  K G +D A+++ +
Sbjct: 365 VLFACSHAGLLEDG-WYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLN 419



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 84/173 (48%), Gaps = 16/173 (9%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM- 68
           D+ + N+L+  Y  CG + DA  VF++  + DV++W++MI+G  +NG   E LKLF++M 
Sbjct: 292 DLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMK 351

Query: 69  ---PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWV-----VLISGFAQNGRP 120
               + N ++   +L      G ++D    F  M K   +  V      +I    + G+ 
Sbjct: 352 SSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKL 411

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD 173
            +A+ L  EM+    EP++    +LL AC     +     +  Y  KK I LD
Sbjct: 412 DDAVKLLNEMEC---EPDAVTWRTLLGAC----RVQRNMVLAEYAAKKVIALD 457



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 95/214 (44%), Gaps = 10/214 (4%)

Query: 108 VVLISGFA----QNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYS 163
            +L+S F     Q   P+ A+     +QS  L  +SA    L+  C    A+  GN +  
Sbjct: 27  TLLLSEFTRLCYQRDLPR-AMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICR 85

Query: 164 YIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIE 223
           ++     +    L   LI+MY K   ++ A Q+F     ++V ++T+ I   +      +
Sbjct: 86  HLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQK 145

Query: 224 AFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMV 283
           A EL   M    + P+  +Y +VL +C+ +  V       H      G++ ++   + ++
Sbjct: 146 ALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVR----MLHCGIIKEGLESDVFVRSALI 201

Query: 284 DLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
           D+  + G  E+A +    M +  D ++W +++G 
Sbjct: 202 DVFAKLGEPEDALSVFDEM-VTGDAIVWNSIIGG 234


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 198/548 (36%), Positives = 313/548 (57%), Gaps = 40/548 (7%)

Query: 3    VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
            VK  F+ +V   N+L+  YS CG + DA   F++     VVSW S+I  YVR G   + +
Sbjct: 681  VKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAI 740

Query: 63   KLFDKMP----------------------------------QRNDVSW-----NSILGGL 83
            +LF +M                                   ++N+++      N+++   
Sbjct: 741  RLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMY 800

Query: 84   VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
             + GS+++A  VF+Q+P + +VSW  +I G+++N  P EAL LF EMQ  +  P+   + 
Sbjct: 801  AKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQK-ESRPDGITMA 859

Query: 144  SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
             LL AC  L AL+ G  ++  I +     +  +  ALIDMY KCGS+  A  +F    +K
Sbjct: 860  CLLPACGSLAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEK 919

Query: 204  DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
            D+  +T  I G  M+G   EA   F+ M+  GI PD I++ ++L ACSH G + +G+ +F
Sbjct: 920  DLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGFF 979

Query: 264  HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
            +SM     ++P+L+HYACMVDLL R G L +A N I +MP+KPD  IWG LL  CR+H +
Sbjct: 980  NSMISECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALLCGCRIHHD 1039

Query: 324  AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE 383
             E+ +++   + E + ++ G Y+LL+NIY E  K E  +++R+ + KR +K++PGCS IE
Sbjct: 1040 VELAEKVAEHVFELEPDNAGYYVLLANIYAEAEKWEEVKKLRERIGKRGLKKSPGCSWIE 1099

Query: 384  LDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYH 443
            + G    F++ D +H + + I+     +  K+KN G++ + R  + +  + EKE  +  H
Sbjct: 1100 VQGKFTTFVSADTAHPQAKSIFSLLNNLRIKMKNEGHSPKMRYALINAGDMEKEVALCGH 1159

Query: 444  SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
            SEKLA+AFG++    G  IR+ KN+R+C DCH   K +SK  +R+I +RD   +HHF+DG
Sbjct: 1160 SEKLAMAFGILNLPSGRTIRVAKNLRVCDDCHEMAKFMSKTTRREIILRDSNRFHHFKDG 1219

Query: 504  SCSCLEYW 511
             CSC ++W
Sbjct: 1220 FCSCRDFW 1227



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 113/359 (31%), Positives = 169/359 (47%), Gaps = 42/359 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V K  F     V NSLI  Y   G V  A  +FDE  D DVVSWNSMI+G V NG     
Sbjct: 579 VYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSA 638

Query: 62  LKLFDKMP---------------------------------------QRNDVSWNSILGG 82
           L+ F +M                                         R  +  N++L  
Sbjct: 639 LEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDM 698

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G+++DA + F +M ++++VSW  LI+ + + G   +A+ LF EM+S  + P+   +
Sbjct: 699 YSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSM 758

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S+L ACA   +LD G  V++YI+K  + L   +  AL+DMYAKCGS++ A  VF     
Sbjct: 759 TSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPV 818

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           KD+ ++ + I G + N    EA +LF  M+ K   PD I+   +L AC  L  +E G   
Sbjct: 819 KDIVSWNTMIGGYSKNSLPNEALKLFAEMQ-KESRPDGITMACLLPACGSLAALEIG-RG 876

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            H     +G   EL     ++D+  + G L  A      +P K D + W  ++  C +H
Sbjct: 877 IHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEK-DLITWTVMISGCGMH 934



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 102/357 (28%), Positives = 169/357 (47%), Gaps = 42/357 (11%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDES-DDLDVVSWNSMINGYVRNGEIL 59
           ++  N    +  +   L+  Y  CG +R+ R +FD    D  V  WN M++ Y + G+  
Sbjct: 476 VISSNGIPIEGVLGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYR 535

Query: 60  EGLKLFDKMPQRNDV-----------------------------------SWNSILGGLV 84
           E + LF KM +                                       S+N+++  L+
Sbjct: 536 ESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLI 595

Query: 85  ----RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
               + G VD A ++F+++  R +VSW  +ISG   NG    AL  F +M  L +  + A
Sbjct: 596 ATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLA 655

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
            LV+ ++ACA +G+L  G  ++    K C   + +    L+DMY+KCG+++ A+Q F   
Sbjct: 656 TLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKM 715

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
           G K V ++TS I      G   +A  LF  M+SKG+SPD  S  +VL AC+    ++KG 
Sbjct: 716 GQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKG- 774

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
              H+    + +   L     ++D+  + G +EEA    + +P+K D V W T++G 
Sbjct: 775 RDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVK-DIVSWNTMIGG 830



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 81/159 (50%), Gaps = 16/159 (10%)

Query: 2    VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
            +++N ++ ++ V N+LI  Y  CG +  AR +FD   + D+++W  MI+G   +G   E 
Sbjct: 881  ILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEA 940

Query: 62   LKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQM-------PKRSLVSWVVL 110
            +  F KM     + +++++ SIL      G +++    FN M       PK  L  +  +
Sbjct: 941  IATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPK--LEHYACM 998

Query: 111  ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
            +   A+ G   +A  L   ++++ ++P++ I  +LL  C
Sbjct: 999  VDLLARTGNLSKAYNL---IETMPIKPDATIWGALLCGC 1034



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 3/147 (2%)

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCI 170
           I  F + G  + A+ L R  Q  +L+ N+    S+L  CA+   L  G  V+S I    I
Sbjct: 425 ICKFCEVGDLRNAVELLRMSQKSELDLNA--YSSILQLCAEHKCLQEGKMVHSVISSNGI 482

Query: 171 KLDSILCAALIDMYAKCGSIDLAMQVF-HSYGDKDVSAYTSAIFGLAMNGHSIEAFELFE 229
            ++ +L A L+ MY  CG++    ++F H   D  V  +   +   A  G   E+  LF+
Sbjct: 483 PIEGVLGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFK 542

Query: 230 NMKSKGISPDSISYIAVLSACSHLGWV 256
            M+  GI+ +S ++  +L   + LG V
Sbjct: 543 KMQKLGITGNSYTFSCILKCFATLGRV 569


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 212/552 (38%), Positives = 318/552 (57%), Gaps = 42/552 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE- 60
           V+++    D+ V  SL+  Y+ CG V++AR VFD   + +V+SW +++NGYVR G   E 
Sbjct: 288 VIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMREHNVMSWTALVNGYVRGGGGYER 347

Query: 61  -GLKLFDKMPQRNDVSWN-----SILGGLVRFGSVDDACRVFNQMPKRSLVSWVV----L 110
             +++F  M  +  V+ N      +L         D   +V  Q  K  L +       L
Sbjct: 348 EAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFDFGEQVHGQTIKLGLSAIDCVGNGL 407

Query: 111 ISGFAQNGRPKEALALF-------------------------------REMQSLDLEPNS 139
           +S +A++GR + A   F                               RE++ +    +S
Sbjct: 408 VSVYAKSGRMESARKCFDVLFEKNLVSETVVDDTNVKDFNLNSEQDLDREVEYVGSGVSS 467

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
               SLLS  A +G +  G  +++ + K   + D  +  ALI MY+KCG+ + A+QVF+ 
Sbjct: 468 FTYASLLSGAACIGTIGKGEQIHAMVVKIGFRTDLSVNNALISMYSKCGNKEAALQVFND 527

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
             D +V  +TS I G A +G + +A ELF NM   G+ P+ ++YIAVLSACSH+G +++ 
Sbjct: 528 MEDCNVITWTSIINGFAKHGFASKALELFYNMLETGVKPNDVTYIAVLSACSHVGLIDEA 587

Query: 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACR 319
           + +F SM D HGI P ++HYACMVDLLGR+GLL EA  FI SMP   D ++W T LG+CR
Sbjct: 588 WKHFTSMRDNHGIVPRMEHYACMVDLLGRSGLLSEAIEFINSMPFDADALVWRTFLGSCR 647

Query: 320 VHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGC 379
           VHRN ++G+    M++E + +    YILLSN+Y    + E+   +RK M++++I +  G 
Sbjct: 648 VHRNTKLGEHAAKMILEREPHDPATYILLSNLYATEGRWEDVAAIRKNMKQKQITKEAGS 707

Query: 380 SLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETV 439
           S IE++  VH+F  GD  H K Q+IY+  +E+  KIKN GY   T  V+ D+E+E+KE  
Sbjct: 708 SWIEVENQVHKFHVGDTLHPKAQQIYEKLDELALKIKNVGYVPNTDFVLHDVEDEQKEQY 767

Query: 440 IGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHH 499
           +  HSEKLA+AF LI T     IR+ KN+R+C DCH+A+K +S V  R+I +RD   +HH
Sbjct: 768 LFQHSEKLAVAFALISTPNPKPIRVFKNLRVCGDCHTAIKYISMVSGREIVVRDANRFHH 827

Query: 500 FEDGSCSCLEYW 511
            +DG+CSC +YW
Sbjct: 828 MKDGTCSCNDYW 839



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/350 (26%), Positives = 163/350 (46%), Gaps = 63/350 (18%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFD--ESDDLDVVSWNSMINGYVRNGEIL 59
           +  ++   D  + NSLI  YS       A  +F   E+   DVVS++S+I+ +  N   L
Sbjct: 78  LTTSNLPLDTLLLNSLITLYSKSNDPITAFSIFQSMENSKRDVVSYSSIISCFANNRNCL 137

Query: 60  EGLKLFDKMPQRNDVSWNS----------ILGGLVRFG---------------------- 87
           + +++FD++  ++ V  N           + GG  + G                      
Sbjct: 138 KAVEMFDQLLLQDGVYPNEYCFTAVIRACLKGGFFKTGLCLFGFVLKTGYFDSHVCVGCE 197

Query: 88  ------------SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQ-SLD 134
                        ++ A +VF++M ++++V+W ++I+  AQ G   EA+ LF EM  S  
Sbjct: 198 LIDMFVKGCSLADLESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSG 257

Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
             P+   L  L+S CA++  L  G  ++S++ +  + LD  +  +L+DMYAKCG +  A 
Sbjct: 258 YVPDRFTLTGLISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEAR 317

Query: 195 QVFHSYGDKDVSAYTSAIFGLAM--NGHSIEAFELFENMKSK-GISPDSISYIAVLSACS 251
           +VF    + +V ++T+ + G      G+  EA  +F NM  + G++P+  ++  VL AC+
Sbjct: 318 KVFDGMREHNVMSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACA 377

Query: 252 HLGWVEKGFYYFHSMFDVHG--IKPELDHYAC----MVDLLGRAGLLEEA 295
            L   + G         VHG  IK  L    C    +V +  ++G +E A
Sbjct: 378 SLPDFDFG-------EQVHGQTIKLGLSAIDCVGNGLVSVYAKSGRMESA 420



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 81/158 (51%), Gaps = 12/158 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           MVVK  F  D+ V N+LI  YS CG    A  VF++ +D +V++W S+ING+ ++G   +
Sbjct: 492 MVVKIGFRTDLSVNNALISMYSKCGNKEAALQVFNDMEDCNVITWTSIINGFAKHGFASK 551

Query: 61  GLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLI 111
            L+LF  M +     NDV++ ++L      G +D+A + F  M         +  +  ++
Sbjct: 552 ALELFYNMLETGVKPNDVTYIAVLSACSHVGLIDEAWKHFTSMRDNHGIVPRMEHYACMV 611

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
               ++G   EA+     + S+  + ++ +  + L +C
Sbjct: 612 DLLGRSGLLSEAIEF---INSMPFDADALVWRTFLGSC 646



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 72/157 (45%), Gaps = 7/157 (4%)

Query: 114 FAQNGRPKEALALFREMQSLDLEP--NSAILVS--LLSACAQLGALDYGNWVYSYIQKKC 169
           F     P++       +   D E   N+ ++ S  LL  C +      G  ++  +    
Sbjct: 23  FNHFNNPQQLHKAITTLNLTDTESTHNNKLITSSLLLKQCIRTKNTHLGKLLHHKLTTSN 82

Query: 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD--KDVSAYTSAIFGLAMNGHSIEAFEL 227
           + LD++L  +LI +Y+K      A  +F S  +  +DV +Y+S I   A N + ++A E+
Sbjct: 83  LPLDTLLLNSLITLYSKSNDPITAFSIFQSMENSKRDVVSYSSIISCFANNRNCLKAVEM 142

Query: 228 FEN-MKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           F+  +   G+ P+   + AV+ AC   G+ + G   F
Sbjct: 143 FDQLLLQDGVYPNEYCFTAVIRACLKGGFFKTGLCLF 179


>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial; AltName: Full=Protein DYW10;
           Flags: Precursor
 gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 656

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/534 (38%), Positives = 302/534 (56%), Gaps = 32/534 (5%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D F  N ++  Y        A+  FD     D  SWN+MI GY R GE+ +  +LF  M 
Sbjct: 123 DTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMM 182

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKR--------------------------- 102
           ++N+VSWN+++ G +  G ++ A   F   P R                           
Sbjct: 183 EKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKD 242

Query: 103 -----SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDY 157
                +LV+W  +ISG+ +N RP++ L LFR M    + PNS+ L S L  C++L AL  
Sbjct: 243 MTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQL 302

Query: 158 GNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAM 217
           G  ++  + K  +  D     +LI MY KCG +  A ++F     KDV A+ + I G A 
Sbjct: 303 GRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQ 362

Query: 218 NGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELD 277
           +G++ +A  LF  M    I PD I+++AVL AC+H G V  G  YF SM   + ++P+ D
Sbjct: 363 HGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPD 422

Query: 278 HYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIES 337
           HY CMVDLLGRAG LEEA   I SMP +P   ++GTLLGACRVH+N E+ +     L++ 
Sbjct: 423 HYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQL 482

Query: 338 DQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRS 397
           +  +   Y+ L+NIY    + E+   VRK M++  + + PG S IE+   VH F + DR 
Sbjct: 483 NSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSSDRI 542

Query: 398 HEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTK 457
           H +   I++  +E+ KK+K  GY  E    + ++EEE+KE ++ +HSEKLA+AFG I   
Sbjct: 543 HPELDSIHKKLKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLP 602

Query: 458 PGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            GS I++ KN+RIC DCH A+K +S++ KR+I +RD   +HHF+DGSCSC +YW
Sbjct: 603 QGSQIQVFKNLRICGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSCGDYW 656



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 147/326 (45%), Gaps = 12/326 (3%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRN-GEILE 60
           + K S    +F  N +I      G +  A  VF      + ++WNS++ G  ++   ++E
Sbjct: 52  LTKPSDQDQIFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMME 111

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
             +LFD++P+ +  S+N +L   VR  + + A   F++MP +   SW  +I+G+A+ G  
Sbjct: 112 AHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEM 171

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
           ++A  LF  M    +E N     +++S   + G L+  +  +     + +    +   A+
Sbjct: 172 EKARELFYSM----MEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGV----VAWTAM 223

Query: 181 IDMYAKCGSIDLAMQVFHSYG-DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
           I  Y K   ++LA  +F     +K++  + + I G   N    +  +LF  M  +GI P+
Sbjct: 224 ITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPN 283

Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI 299
           S    + L  CS L  ++ G    H +     +  ++     ++ +  + G L +A    
Sbjct: 284 SSGLSSALLGCSELSALQLG-RQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLF 342

Query: 300 ASMPMKPDNVIWGTLLGACRVHRNAE 325
             M  K D V W  ++     H NA+
Sbjct: 343 EVMK-KKDVVAWNAMISGYAQHGNAD 367



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 83/160 (51%), Gaps = 16/160 (10%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V K++   DV    SLI  Y  CG + DA  +F+     DVV+WN+MI+GY ++G   +
Sbjct: 309 IVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADK 368

Query: 61  GLKLFDKMPQ---RND-VSWNSIL-----GGLVRFGSV--DDACRVFNQMPKRSLVSWVV 109
            L LF +M     R D +++ ++L      GLV  G    +   R +   P+    + +V
Sbjct: 369 ALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMV 428

Query: 110 LISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
            + G A  G+ +EAL L R   S+   P++A+  +LL AC
Sbjct: 429 DLLGRA--GKLEEALKLIR---SMPFRPHAAVFGTLLGAC 463


>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 904

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/507 (39%), Positives = 308/507 (60%), Gaps = 16/507 (3%)

Query: 16  SLIQFYSVCGRVRDARWV-----------FDESDDLDVVSWNSMINGYVRNGEILEGLKL 64
           S++   S C ++R+  W            F+  D++     N++I+ Y++        ++
Sbjct: 338 SMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNI----CNALIDMYMKCHRQDTAFRI 393

Query: 65  FDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEAL 124
           FD+M  +  V+WNSI+ G +  G VD A   FN MP++++VSW  +IS   Q    +EA+
Sbjct: 394 FDRMSNKTVVTWNSIVAGYIENGEVDAAWETFNTMPEKNIVSWNTIISALVQENMYEEAI 453

Query: 125 ALFREMQSLD-LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDM 183
            +F  MQS + +  +   ++S+ SAC  LGALD   W+Y YI+K  I+LD  L   L+DM
Sbjct: 454 EVFHYMQSQECVNVDGVTMMSIASACGHLGALDLAKWIYYYIEKNRIQLDVRLGTTLVDM 513

Query: 184 YAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISY 243
           +++CG  + AM +F+S  ++DVSA+T+AI  +AM G+   A ELF  M  +G+ PD + +
Sbjct: 514 FSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNVERAIELFNEMIEQGLKPDGVVF 573

Query: 244 IAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP 303
           I  L+AC H G V++G   F+SM  +HG+ PE  HY CMVDLLGRAGLLEEA   I  MP
Sbjct: 574 IGALTACCHGGLVQQGKEIFNSMEKLHGVSPEDVHYGCMVDLLGRAGLLEEALQLIKDMP 633

Query: 304 MKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEE 363
            +P++VIW +LL ACRV  N EM       +        G Y+LLSN+Y    +  +  +
Sbjct: 634 TEPNDVIWNSLLAACRVQGNVEMAAFAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAK 693

Query: 364 VRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVE 423
           VR +M+++ +++ PG S+I++ G  HEF +GD SH + ++I    +E+ ++  + G+  +
Sbjct: 694 VRLSMKEKGLRKPPGTSVIQIRGKTHEFTSGDESHPEMRKIEAMLDELSQRASDLGHVPD 753

Query: 424 TRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSK 483
             +V+ D++E+EK  ++  HSEKLA+AFGLI +  G+ IRIVKN+R+CS CHS  K  SK
Sbjct: 754 LSNVLMDVDEQEKIFMLSRHSEKLAMAFGLISSNKGTTIRIVKNLRVCSYCHSFAKFASK 813

Query: 484 VFKRKISIRDRKHYHHFEDGSCSCLEY 510
           V+ R+I +RD   +H    G CSC ++
Sbjct: 814 VYNREIILRDNNRFHFIRQGKCSCSDF 840



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 110/417 (26%), Positives = 181/417 (43%), Gaps = 78/417 (18%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +++K  +A D+FV+NSL+ FY+ CG +  AR VFDE  + +VVSW SMI GY R     +
Sbjct: 158 LIIKMDYAKDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARREFAKD 217

Query: 61  GLKLFDKMPQRNDVSWNSI------------------------------------LGGLV 84
            + LF +M +  DV  NS+                                    +  LV
Sbjct: 218 AVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVNDLMISALV 277

Query: 85  ----RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
               +  ++D A R+F++    +L     + S + + G  KEAL +   M    + P+  
Sbjct: 278 DMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSGIRPDRI 337

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
            ++S +S+C+QL  + +G   + Y+ +   +    +C ALIDMY KC   D A ++F   
Sbjct: 338 SMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRM 397

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGI------------------------ 236
            +K V  + S + G   NG    A+E F  M  K I                        
Sbjct: 398 SNKTVVTWNSIVAGYIENGEVDAAWETFNTMPEKNIVSWNTIISALVQENMYEEAIEVFH 457

Query: 237 --------SPDSISYIAVLSACSHLGWVE--KGFYYFHSMFDVHGIKPELDHYACMVDLL 286
                   + D ++ +++ SAC HLG ++  K  YY+    + + I+ ++     +VD+ 
Sbjct: 458 YMQSQECVNVDGVTMMSIASACGHLGALDLAKWIYYY---IEKNRIQLDVRLGTTLVDMF 514

Query: 287 GRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDG 343
            R G  E A +   S+  + D   W   +GA  +  N E    + N +IE     DG
Sbjct: 515 SRCGDPESAMSIFNSLTNR-DVSAWTAAIGAMAMAGNVERAIELFNEMIEQGLKPDG 570



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/264 (32%), Positives = 142/264 (53%), Gaps = 14/264 (5%)

Query: 2   VVKNSFAYDV-FVKNSLIQFYSVCGRVRDARWVFDE------SDDLDVVSWNSMINGYVR 54
           V +N  +Y   F+ NSLI+ Y+  G  ++A  +F        S D     +   +    R
Sbjct: 88  VFENGESYGTCFMYNSLIRGYASSGLCKEAILLFIRMMNSGISPDKYTFPFGLSVCAKSR 147

Query: 55  ---NGEILEGLKLFDKMPQRNDV-SWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVL 110
              NG  + GL +  KM    D+   NS++      G +D A +VF++M +R++VSW  +
Sbjct: 148 DKGNGIQIHGLII--KMDYAKDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSM 205

Query: 111 ISGFAQNGRPKEALALF-REMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC 169
           I G+A+    K+A+ LF R ++  D+ PNS  +V ++SACA+L  L+ G  VY +I+   
Sbjct: 206 ICGYARREFAKDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIRDSG 265

Query: 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFE 229
           I+++ ++ +AL+DMY KC +ID+A ++F  YG  ++    +        G + EA  +  
Sbjct: 266 IEVNDLMISALVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLN 325

Query: 230 NMKSKGISPDSISYIAVLSACSHL 253
            M   GI PD IS ++ +S+CS L
Sbjct: 326 LMMDSGIRPDRISMLSAISSCSQL 349


>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
 gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 208/544 (38%), Positives = 312/544 (57%), Gaps = 40/544 (7%)

Query: 7   FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFD 66
           +  DVFV ++L+  YS CG + DA  VFD     D V+W++M+ G+V  G  +E L ++ 
Sbjct: 142 YGRDVFVCSALLHVYSRCGAMGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVEALGMYS 201

Query: 67  KMP---------------QRNDVSWNSILGGLV--RF----------------------G 87
           +M                Q   ++ N+ +G  V  RF                      G
Sbjct: 202 RMREHGVAEDEVVMVGVIQACTLTGNTRMGASVHGRFLRHGMRMDVVIATSLVDMYAKNG 261

Query: 88  SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLS 147
             D A +VF  MP R+ VSW  LISGFAQNG   EAL LFREM +  L+P+S  LVS L 
Sbjct: 262 HFDVARQVFRMMPYRNAVSWNALISGFAQNGHADEALDLFREMSTSGLQPDSGALVSALL 321

Query: 148 ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSA 207
           ACA +G L  G  ++ +I ++ ++   IL  A++DMY+KCGS++ A ++F+    +D+  
Sbjct: 322 ACADVGFLKLGKSIHGFILRR-LEFQCILGTAVLDMYSKCGSLESARKLFNKLSSRDLVL 380

Query: 208 YTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMF 267
           + + I     +G   +A  LF+ +   GI PD  ++ ++LSA SH G VE+G ++F  M 
Sbjct: 381 WNAMIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMI 440

Query: 268 DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMG 327
              GI+P   H  C+VDLL R+GL+EEA   +ASM  +P   IW  LL  C  ++  E+G
Sbjct: 441 TEFGIEPTEKHCVCVVDLLARSGLVEEANEMLASMHTEPTIPIWVALLSGCLNNKKLELG 500

Query: 328 QRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGV 387
           + I   ++ES     G   L+SN+Y    K +   E+RK M+    K+ PG SLIE+ G 
Sbjct: 501 ETIAKKILESQPEDIGVLALVSNLYAAAKKWDKVREIRKLMKDSGSKKVPGYSLIEVHGT 560

Query: 388 VHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKL 447
            H F+  D+SH + QEI +   ++  +++  GY   T  V  D++E+ KE ++ YHSE+L
Sbjct: 561 RHAFVMEDQSHPQHQEILKMISKLSFEMRKMGYVPRTEFVYHDLDEDVKEQLLSYHSERL 620

Query: 448 ALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSC 507
           A+AFGL+ T PG+ + I+KN+R+C DCH A+K +SK+  R+I +RD K +HHF+DG+CSC
Sbjct: 621 AIAFGLLNTSPGTRLVIIKNLRVCGDCHDAIKYISKIVDREIVVRDAKRFHHFKDGACSC 680

Query: 508 LEYW 511
            +YW
Sbjct: 681 GDYW 684



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 115/242 (47%), Gaps = 5/242 (2%)

Query: 76  WNSILGGLVRFGSVDDACRVFNQMP--KRSLVSWVVLISGFAQNGRPKEALALFREMQSL 133
           + S+     R G++D A       P  +  + +W  L++  ++ G P  AL +FR + S 
Sbjct: 47  FPSLAAAYARVGALDAAESTLAASPSSRSCIPAWNALLAARSRAGSPGAALRVFRALPS- 105

Query: 134 DLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLA 193
              P+S      L+ACA+LG LD    V           D  +C+AL+ +Y++CG++  A
Sbjct: 106 SARPDSTTFTLALTACARLGDLDAAEAVRVRAFAAGYGRDVFVCSALLHVYSRCGAMGDA 165

Query: 194 MQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL 253
           ++VF     KD  A+++ + G    G  +EA  ++  M+  G++ D +  + V+ AC+  
Sbjct: 166 IRVFDGMPRKDHVAWSTMVAGFVSAGRPVEALGMYSRMREHGVAEDEVVMVGVIQACTLT 225

Query: 254 GWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGT 313
           G    G    H  F  HG++ ++     +VD+  + G  + A      MP + + V W  
Sbjct: 226 GNTRMG-ASVHGRFLRHGMRMDVVIATSLVDMYAKNGHFDVARQVFRMMPYR-NAVSWNA 283

Query: 314 LL 315
           L+
Sbjct: 284 LI 285



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 127/287 (44%), Gaps = 44/287 (15%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +++    DV +  SL+  Y+  G    AR VF      + VSWN++I+G+ +NG   E L
Sbjct: 239 LRHGMRMDVVIATSLVDMYAKNGHFDVARQVFRMMPYRNAVSWNALISGFAQNGHADEAL 298

Query: 63  KLFDKMPQRN----------------DVS-----------------WNSILGGLV----- 84
            LF +M                    DV                  +  ILG  V     
Sbjct: 299 DLFREMSTSGLQPDSGALVSALLACADVGFLKLGKSIHGFILRRLEFQCILGTAVLDMYS 358

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
           + GS++ A ++FN++  R LV W  +I+    +G   +ALALF+E+    ++P+ A   S
Sbjct: 359 KCGSLESARKLFNKLSSRDLVLWNAMIACCGTHGCGHDALALFQELNETGIKPDHATFAS 418

Query: 145 LLSACAQLGALDYGN-WVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           LLSA +  G ++ G  W    I +  I+     C  ++D+ A+ G ++ A ++  S   +
Sbjct: 419 LLSALSHSGLVEEGKFWFDRMITEFGIEPTEKHCVCVVDLLARSGLVEEANEMLASMHTE 478

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGI--SPDSISYIAVLS 248
                  A+    +N    +  EL E +  K +   P+ I  +A++S
Sbjct: 479 PTIPIWVALLSGCLNN---KKLELGETIAKKILESQPEDIGVLALVS 522


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/548 (36%), Positives = 320/548 (58%), Gaps = 40/548 (7%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           K+     V +  +L+  Y+ CG +  AR VFD     + V+W+++I G+V    + +   
Sbjct: 266 KSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFL 325

Query: 64  LFDKMPQR----------------------------------------NDVSWNSILGGL 83
           LF  M  +                                        +  + NS+L   
Sbjct: 326 LFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMY 385

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
            + G +D A  +F++M  +  VS+  L+SG+ QNGR +EA  +F++MQ+ ++EP++A +V
Sbjct: 386 AKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMV 445

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           SL+ AC+ L AL +G   +  +  + +  ++ +C ALIDMYAKCG IDL+ QVF+    +
Sbjct: 446 SLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSR 505

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           D+ ++ + I G  ++G   EA  LF  M + G  PD +++I +LSACSH G V +G ++F
Sbjct: 506 DIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWF 565

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
           H M   +G+ P ++HY CMVDLL R G L+EA  FI SMP++ D  +W  LLGACRV++N
Sbjct: 566 HVMRHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKN 625

Query: 324 AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE 383
            ++G+++  M+ E      G ++LLSNIY    + + A EVR   + +  K++PGCS IE
Sbjct: 626 IDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIE 685

Query: 384 LDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYH 443
           ++G +H F+ GD+SH ++ EIY+  + I+  IK  GY  +T  V+ D+EEEEKE  +  H
Sbjct: 686 INGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICH 745

Query: 444 SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
           SEKLA+A+G++       I + KN+R+C DCH+ +K +S + +R I +RD   +HHF++G
Sbjct: 746 SEKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLLKRRAIIVRDANRFHHFKNG 805

Query: 504 SCSCLEYW 511
            CSC ++W
Sbjct: 806 QCSCGDFW 813



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 156/366 (42%), Gaps = 58/366 (15%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D+FV  +L+  Y  C  + DA  +F      D+V+WN+M+ GY  +G     +     M 
Sbjct: 159 DLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQ 218

Query: 70  QR------NDVSWNSILGGLVRFGSVDD----------ACRVFNQMPKRSL--------- 104
            +      N  +  ++L  L + G++            AC   N+  K  L         
Sbjct: 219 MQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTA 278

Query: 105 --------------------------VSWVVLISGFAQNGRPKEALALFREMQSLD---L 135
                                     V+W  LI GF    R  +A  LF+ M +     L
Sbjct: 279 LLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFL 338

Query: 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ 195
            P S  + S L ACA L  L  G  +++ + K  +  D     +L+ MYAK G ID A+ 
Sbjct: 339 SPTS--IASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIA 396

Query: 196 VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGW 255
           +F     KD  +Y++ + G   NG + EAF +F+ M++  + PD+ + ++++ ACSHL  
Sbjct: 397 LFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAA 456

Query: 256 VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
           ++ G    H    + G+  E      ++D+  + G ++ +      MP + D V W T++
Sbjct: 457 LQHG-RCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSR-DIVSWNTMI 514

Query: 316 GACRVH 321
               +H
Sbjct: 515 AGYGIH 520



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 96/348 (27%), Positives = 162/348 (46%), Gaps = 62/348 (17%)

Query: 25  GRVRDARWVFDESDDLDVVSWNSMINGYVRNGEIL--EGLKLFDKMPQRNDVSWN----- 77
           G +  A  +FD+    DV ++N +I  Y  +      +GL L+ +M  R+ V+ N     
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRM-LRHRVAPNNYTFP 129

Query: 78  ---------------------SILGGL--------------VRFGSVDDACRVFNQMPKR 102
                                +I  GL              V+   + DA  +F  MP R
Sbjct: 130 FALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPAR 189

Query: 103 SLVSWVVLISGFAQNGRPKEALA--LFREMQSLDLEPNSAILVSLLSACAQLGALDYGNW 160
            LV+W  +++G+A +G    A+A  L  +MQ   L PN++ LV+LL   AQ GAL  G  
Sbjct: 190 DLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTS 249

Query: 161 VYSYIQKKCIKLDS----------ILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
           V++Y  + C+  +           +L  AL+DMYAKCGS+  A +VF +   ++   +++
Sbjct: 250 VHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSA 309

Query: 211 AIFGLAMNGHSIEAFELFENMKSKG---ISPDSISYIAVLSACSHLGWVEKGFYYFHSMF 267
            I G  +     +AF LF+ M ++G   +SP SI+  + L AC+ L  +  G    H++ 
Sbjct: 310 LIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACASLDHLRMG-EQLHALL 366

Query: 268 DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
              G+  +L     ++ +  +AGL+++A      M +K D V +  L+
Sbjct: 367 AKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVK-DTVSYSALV 413



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 111/241 (46%), Gaps = 44/241 (18%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++ K+    D+   NSL+  Y+  G +  A  +FDE    D VS++++++GYV+NG   E
Sbjct: 365 LLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEE 424

Query: 61  GLKLFDKMPQ-----------------------------------RNDVSWNSILGGLV- 84
              +F KM                                     R   S  SI   L+ 
Sbjct: 425 AFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALID 484

Query: 85  ---RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G +D + +VFN MP R +VSW  +I+G+  +G  KEA ALF EM +L   P+   
Sbjct: 485 MYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVT 544

Query: 142 LVSLLSACAQLGALDYG-NW--VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH 198
            + LLSAC+  G +  G +W  V  +      +++  +C  ++D+ ++ G +D A +   
Sbjct: 545 FICLLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYIC--MVDLLSRGGFLDEAYEFIQ 602

Query: 199 S 199
           S
Sbjct: 603 S 603



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 106/243 (43%), Gaps = 14/243 (5%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEA--LALFREMQSLDLEPNSAILVS 144
           G +  A  +F+Q+P   + ++  LI  ++ +     A  L L+R M    + PN+     
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPF 130

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
            L AC+ L     G  ++ +     ++ D  +  AL+DMY KC  +  A  +F +   +D
Sbjct: 131 ALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARD 190

Query: 205 VSAYTSAIFGLAMNG--HSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG--F 260
           + A+ + + G A +G  H   A  L   M+   + P++ + +A+L   +  G + +G   
Sbjct: 191 LVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSV 250

Query: 261 YYFHSMFDVHGIKPELDHY-------ACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGT 313
           + +     +H  +               ++D+  + G L  A     +MP + + V W  
Sbjct: 251 HAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPAR-NEVTWSA 309

Query: 314 LLG 316
           L+G
Sbjct: 310 LIG 312



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 83/177 (46%), Gaps = 16/177 (9%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+    A +  + N+LI  Y+ CGR+  +R VF+     D+VSWN+MI GY  +G   E 
Sbjct: 467 VIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEA 526

Query: 62  LKLFDKMPQ----RNDVSWNSILGGLVRFGSVDDACRVFNQM-------PKRSLVSWVVL 110
             LF +M       + V++  +L      G V +    F+ M       P+  +  ++ +
Sbjct: 527 TALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPR--MEHYICM 584

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK 167
           +   ++ G   EA   +  +QS+ L  +  + V+LL AC     +D G  V   IQ+
Sbjct: 585 VDLLSRGGFLDEA---YEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQE 638


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 193/508 (37%), Positives = 304/508 (59%), Gaps = 34/508 (6%)

Query: 7   FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFD 66
           F+ D++V N++I  Y  CG +R AR V                               FD
Sbjct: 141 FSSDLYVNNAVIDMYVKCGSLRCARMV-------------------------------FD 169

Query: 67  KMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALAL 126
           +MP+R+ +SW  ++    R G +  A  +F+ +P + +V+W  +++G+AQN  P +AL +
Sbjct: 170 EMPERDVISWTGLIVAYTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEV 229

Query: 127 FREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKL-DSILC-AALIDMY 184
           FR ++   +E +   LV ++SACAQLGA  Y NW+    +     + D++L  +ALIDMY
Sbjct: 230 FRRLRDEGVEIDEVTLVGVISACAQLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMY 289

Query: 185 AKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYI 244
           +KCG+++ A  VF    +++V +Y+S I G A++G +  A +LF +M   G+ P+ ++++
Sbjct: 290 SKCGNVEEAYDVFKGMRERNVFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFV 349

Query: 245 AVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPM 304
            VL+ACSH G V++G   F SM   +G+ P  + YACM DLL RAG LE+A   + +MPM
Sbjct: 350 GVLTACSHAGLVDQGQQLFASMEKCYGVAPTAELYACMTDLLSRAGYLEKALQLVETMPM 409

Query: 305 KPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEV 364
           + D  +WG LLGA  VH N ++ +     L E + ++ G Y+LLSN Y    + ++  +V
Sbjct: 410 ESDGAVWGALLGASHVHGNPDVAEIASKRLFELEPDNIGNYLLLSNTYASAGRWDDVSKV 469

Query: 365 RKTMRKRKIKRAPGCSLIEL-DGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVE 423
           RK +R++ +K+ PG S +E  +G++H+F+AGD SH K  EI +   ++++++K  GY   
Sbjct: 470 RKLLREKNLKKNPGWSWVEAKNGMIHKFVAGDVSHPKINEIKKELNDLLERLKGIGYQPN 529

Query: 424 TRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSK 483
             S+ + I + EK  ++  HSEKLALAFGL+ T  GS I+I+KN+RIC DCH  M   SK
Sbjct: 530 LSSLPYGINDREKRLLLMAHSEKLALAFGLLSTDVGSTIKIMKNLRICEDCHIVMCGASK 589

Query: 484 VFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           V  RKI +RD   +HHF +G+CSC  +W
Sbjct: 590 VTGRKIVVRDNTRFHHFLNGACSCSNFW 617



 Score = 42.0 bits (97), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 71/176 (40%), Gaps = 18/176 (10%)

Query: 163 SYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSI 222
           SY+  K ++L + L    +  Y +         +F      +  A+T+ I   A+ G   
Sbjct: 40  SYVLTKLLRLVTALPHVPLHSYPRL--------LFSQLHTPNPFAWTALIRAYALRGPLS 91

Query: 223 EAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACM 282
           +A   + +M+ + +SP S ++ A+ SAC+ +     G         + G   +L     +
Sbjct: 92  QALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALGAQLHAQTLLLGGFSSDLYVNNAV 151

Query: 283 VDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338
           +D+  + G L  A      MP + D + W  L+ A           RIG+M    D
Sbjct: 152 IDMYVKCGSLRCARMVFDEMPER-DVISWTGLIVAY---------TRIGDMRAARD 197


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 201/549 (36%), Positives = 316/549 (57%), Gaps = 41/549 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +K     D  V N+L+  Y  C  +  +  VFD     D +SW ++I  Y ++   +E L
Sbjct: 393 IKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSSRHIEAL 452

Query: 63  KLFDKMPQRNDVSWNSILGGLV-------------------------------------- 84
           ++F +  Q+  +  + ++ G +                                      
Sbjct: 453 EIF-REAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGLLDLVVKNRIIDIY 511

Query: 85  -RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
              G V  + ++F  + ++ +V+W  +I+ +A +G   EAL LF EMQS D++P+S  LV
Sbjct: 512 GECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALV 571

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           S+L A   L +L  G  V+ ++ ++   ++  + ++L+DMY+ CGS+  A++VF++   K
Sbjct: 572 SILGAIGGLSSLAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCK 631

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           D+  +T+ I    M+GH  +A +LF+ M   G++PD +S++A+L ACSH   V +G  Y 
Sbjct: 632 DMVLWTAMINATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALLYACSHSKLVNEGKCYL 691

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
             M   + ++P  +HYAC+VDLLGR+G  EEA  FI SMP+KP +V+W +LLGACRVH+N
Sbjct: 692 DMMMSTYRLEPWQEHYACVVDLLGRSGQTEEAYEFIKSMPLKPKSVVWCSLLGACRVHKN 751

Query: 324 AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE 383
            E+     N L+E + ++ G Y+L+SN++ E  K  NA+EVR  + +R +++ P CS IE
Sbjct: 752 HELAVVAANRLLELEPDNPGNYVLVSNVFAEMGKWNNAKEVRARISERGLRKDPACSWIE 811

Query: 384 LDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKI-KNYGYNVETRSVMFDIEEEEKETVIGY 442
           +   VH F   D SH   + I     EI +++ K  GY  +TRSV+ D+ EEEK  V+  
Sbjct: 812 IGNNVHTFTTRDNSHRDAERINLKLAEITERLRKEGGYTEDTRSVLHDVSEEEKVDVLHR 871

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSE+LA++FGLI T+PG  +RI KN+R+C DCH   KLVSK+F R I +RD   +HHF  
Sbjct: 872 HSERLAISFGLINTRPGMPLRIAKNLRVCGDCHEFTKLVSKLFDRDIVVRDANRFHHFSG 931

Query: 503 GSCSCLEYW 511
           GSCSC ++W
Sbjct: 932 GSCSCGDFW 940



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 117/410 (28%), Positives = 180/410 (43%), Gaps = 73/410 (17%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFD-ESDDLDVVSWNSMINGYVRNGEIL 59
           + VK+      FV N+LI  Y+ CG +  A  VF+   D  DV SWNSMI+G ++NG  L
Sbjct: 189 LAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFL 248

Query: 60  EGLKLFDKMPQRNDVSWNS---------------------------------------IL 80
           + L LF  M QR  +S NS                                       +L
Sbjct: 249 QALDLFRGM-QRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVNIQCNALL 307

Query: 81  GGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
               + G VD A RVF ++ ++  +SW  ++S + QNG   EA+    EM     +P+ A
Sbjct: 308 VMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHA 367

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
            +VSL SA   LG L  G  V++Y  K+ +  D+ +   L+DMY KC  I+ +  VF   
Sbjct: 368 CIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRM 427

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS--------- 251
             KD  ++T+ I   A +   IEA E+F   + +GI  D +   ++L ACS         
Sbjct: 428 RIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAK 487

Query: 252 --HLGWVEKGFYYF---HSMFDVHGIKPELDH---------------YACMVDLLGRAGL 291
             H   +  G       + + D++G   E+ H               +  M++    +GL
Sbjct: 488 QLHCYAIRNGLLDLVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGL 547

Query: 292 LEEAENFIASMP---MKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338
           L EA    A M    ++PD+V   ++LGA     +   G+ +   LI  +
Sbjct: 548 LNEALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRN 597



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/353 (28%), Positives = 154/353 (43%), Gaps = 54/353 (15%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D F+   L+  Y  CGRV DAR +FD      V SWN++I  Y+ +G   E L ++  M 
Sbjct: 94  DGFLATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMR 153

Query: 70  ------------------------------------------QRNDVSWNSILGGLVRFG 87
                                                      R+    N+++    + G
Sbjct: 154 LSAASGVAPDGCTLASVLKASGVEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCG 213

Query: 88  SVDDACRVFNQM-PKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
            +D A RVF  M   R + SW  +ISG  QNG   +AL LFR MQ   L  NS   V +L
Sbjct: 214 ILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVL 273

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
             C +L  L+ G  +++ + K   +++ I C AL+ MY KCG +D A++VF    +KD  
Sbjct: 274 QVCTELAQLNLGRELHAALLKSGSEVN-IQCNALLVMYTKCGRVDSALRVFREIDEKDYI 332

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
           ++ S +     NG   EA E    M   G  PD    +++ SA  HLGW+  G       
Sbjct: 333 SWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNG-----KE 387

Query: 267 FDVHGIKPELDHYA----CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
              + IK  LD        ++D+  +   +E + +    M +K D++ W T++
Sbjct: 388 VHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIK-DHISWTTII 439



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 76/157 (48%), Gaps = 12/157 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++ +F  +  + +SL+  YS CG +  A  VF+     D+V W +MIN    +G   + 
Sbjct: 593 LIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCKDMVLWTAMINATGMHGHGKQA 652

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDA-CRVFNQMPKRSLVSW----VVLIS 112
           + LF +M Q     + VS+ ++L        V++  C +   M    L  W      ++ 
Sbjct: 653 IDLFKRMLQTGVTPDHVSFLALLYACSHSKLVNEGKCYLDMMMSTYRLEPWQEHYACVVD 712

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
              ++G+ +EA   +  ++S+ L+P S +  SLL AC
Sbjct: 713 LLGRSGQTEEA---YEFIKSMPLKPKSVVWCSLLGAC 746


>gi|449500413|ref|XP_004161091.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/548 (38%), Positives = 309/548 (56%), Gaps = 40/548 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V K+    D F+ + L+  Y+  G   DA  +FD+    D+VSWNS+I+G+ R   +   
Sbjct: 65  VFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSRCLHM--S 122

Query: 62  LKLFDKMP-----QRNDVS---------------------------------WNSILGGL 83
           L  F  M      + N+V+                                  NS++   
Sbjct: 123 LTAFYTMKFEMSVKPNEVTILSMISACNGALDAGKYIHGFGIKVGGTLEVKVANSLINMY 182

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
            + G +  ACR+F  +P  + VSW  +I+    NG  +E +  F +M+ L +E +   ++
Sbjct: 183 GKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTIL 242

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           +LL AC  LG       ++  +          +  AL+D YAK G +  +  VF   G  
Sbjct: 243 ALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFA 302

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           D  A+T+ + G A +G   EA +LFE+M +KG+ PD +++  +LSACSH G V +G  YF
Sbjct: 303 DRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKSYF 362

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
           + M +V+GI+P +DHY+CMVDLLGR GLL +A   I +MPM+P+  +WG LLGACRVH N
Sbjct: 363 NVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGACRVHGN 422

Query: 324 AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE 383
            E+G+ +   LI  +      YI+LSN+Y  +   ++A +VR  +++R +KR PG S IE
Sbjct: 423 IELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWKDAAKVRALLKERGLKRTPGYSSIE 482

Query: 384 LDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYH 443
                H F  GDRSH +T++IY   EE++ KI+  GY+ +T  V+ D+EEE KE +I  H
Sbjct: 483 YGNKNHHFFVGDRSHPETEKIYSKLEELLGKIRKAGYSSKTEYVLQDVEEEVKEDMINKH 542

Query: 444 SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
           SEKLA+AFGL+ +K G  + I KN+RIC DCHS  KL+S + KR I IRD K +HHF DG
Sbjct: 543 SEKLAIAFGLLVSKEGEALIITKNLRICGDCHSTAKLISLIEKRTIIIRDPKRFHHFSDG 602

Query: 504 SCSCLEYW 511
            CSC +YW
Sbjct: 603 FCSCADYW 610



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 125/260 (48%), Gaps = 7/260 (2%)

Query: 63  KLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKE 122
           ++F  +  R+    + ++    + G  +DA ++F+ MP + LVSW  LISGF++      
Sbjct: 64  RVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSRC--LHM 121

Query: 123 ALALFREMQ-SLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
           +L  F  M+  + ++PN   ++S++SAC   GALD G +++ +  K    L+  +  +LI
Sbjct: 122 SLTAFYTMKFEMSVKPNEVTILSMISACN--GALDAGKYIHGFGIKVGGTLEVKVANSLI 179

Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
           +MY K G +  A ++F +  D +  ++ S I     NG + E  + F  M+  GI  D  
Sbjct: 180 NMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEG 239

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
           + +A+L AC HLG V K     H +    G   ++     ++D   + G L  +      
Sbjct: 240 TILALLQACLHLG-VGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTE 298

Query: 302 MPMKPDNVIWGTLLGACRVH 321
           +    D V W  +L     H
Sbjct: 299 VGF-ADRVAWTAMLAGYAAH 317


>gi|414883628|tpg|DAA59642.1| TPA: hypothetical protein ZEAMMB73_113196, partial [Zea mays]
          Length = 635

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/493 (41%), Positives = 297/493 (60%), Gaps = 30/493 (6%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + VK   A D++V+N+ I FY VCG V   R VF   D+L +V                 
Sbjct: 157 LAVKAGAAGDLYVRNAQIHFYGVCGDVAAMRKVF---DELPIV----------------- 196

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
                     R+ V+WN++L G VR G V  A  VF+ MP R  VSW  +I G+ + G P
Sbjct: 197 ----------RDVVTWNAVLAGYVRAGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEP 246

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
           + AL +F+ M +  ++ N A +V+ LSA AQLG L+ G +V+  +++  + +   L AAL
Sbjct: 247 EVALGVFKNMVAQGVKANEAAIVTALSAAAQLGLLEQGKFVHEVVKRVGMTMSVNLGAAL 306

Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           IDMY+KCGS+  A +VF +   +DV A+ S I GLA +G   +A +LFE   S+G  P S
Sbjct: 307 IDMYSKCGSVAAAKEVFDAMPRRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTS 366

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
           I+++ VL+ACS  G V++G  YF  M + + I+ E++HY CMVDLL RAGL++EA   I 
Sbjct: 367 ITFVGVLNACSRTGLVDEGRRYFKLMAEKYDIESEMEHYGCMVDLLSRAGLVQEAVELIE 426

Query: 301 SMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGEN 360
            M + PD V+WGT+L AC+ H   ++G  +GN LIE D  HDG Y+LL++IY +  K + 
Sbjct: 427 GMRIPPDPVLWGTILSACKRHGLVDLGITVGNKLIELDPAHDGYYVLLASIYAKAKKWDE 486

Query: 361 AEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGY 420
             +VRK M  R   ++ G SL+E  G+VH+FL GD +H+ +  IY     I +++   GY
Sbjct: 487 VRKVRKLMSNRGTSKSAGWSLMEAHGIVHKFLVGDMNHKDSARIYNMLCTINRRLAEAGY 546

Query: 421 NVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKL 480
             +  SV+ DI +EEK   I  HSE+LA+A+G I  + GS IRIVKN+ +C DCH   K+
Sbjct: 547 VPDVSSVLHDIGDEEKVHAIKVHSERLAIAYGFIVVEAGSPIRIVKNLSVCGDCHEFSKM 606

Query: 481 VSKVFKRKISIRD 493
           V+KVF R+I +RD
Sbjct: 607 VTKVFGREIVVRD 619


>gi|449450646|ref|XP_004143073.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/548 (38%), Positives = 309/548 (56%), Gaps = 40/548 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V K+    D F+ + L+  Y+  G   DA  +FD+    D+VSWNS+I+G+ R   +   
Sbjct: 65  VFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSRCLHM--S 122

Query: 62  LKLFDKMP-----QRNDVS---------------------------------WNSILGGL 83
           L  F  M      + N+V+                                  NS++   
Sbjct: 123 LTAFYTMKFEMSVKPNEVTILSMISACSGALDAGKYIHGFGIKVGGTLEVKVANSLINMY 182

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
            + G +  ACR+F  +P  + VSW  +I+    NG  +E +  F +M+ L +E +   ++
Sbjct: 183 GKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTIL 242

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           +LL AC  LG       ++  +          +  AL+D YAK G +  +  VF   G  
Sbjct: 243 ALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFA 302

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           D  A+T+ + G A +G   EA +LFE+M +KG+ PD +++  +LSACSH G V +G  YF
Sbjct: 303 DRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKSYF 362

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
           + M +V+GI+P +DHY+CMVDLLGR GLL +A   I +MPM+P+  +WG LLGACRVH N
Sbjct: 363 NVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGACRVHGN 422

Query: 324 AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE 383
            E+G+ +   LI  +      YI+LSN+Y  +   ++A +VR  +++R +KR PG S IE
Sbjct: 423 IELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWKDAAKVRALLKERGLKRTPGYSSIE 482

Query: 384 LDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYH 443
                H F  GDRSH +T++IY   EE++ KI+  GY+ +T  V+ D+EEE KE +I  H
Sbjct: 483 YGNKNHHFFVGDRSHPETEKIYSKLEELLGKIRKAGYSSKTEYVLQDVEEEVKEDMINKH 542

Query: 444 SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
           SEKLA+AFGL+ +K G  + I KN+RIC DCHS  KL+S + KR I IRD K +HHF DG
Sbjct: 543 SEKLAIAFGLLVSKEGEALIITKNLRICGDCHSTAKLISLIEKRTIIIRDPKRFHHFSDG 602

Query: 504 SCSCLEYW 511
            CSC +YW
Sbjct: 603 FCSCADYW 610



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 126/260 (48%), Gaps = 7/260 (2%)

Query: 63  KLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKE 122
           ++F  +  R+    + ++    + G  +DA ++F+ MP + LVSW  LISGF++      
Sbjct: 64  RVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSRC--LHM 121

Query: 123 ALALFREMQ-SLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
           +L  F  M+  + ++PN   ++S++SAC+  GALD G +++ +  K    L+  +  +LI
Sbjct: 122 SLTAFYTMKFEMSVKPNEVTILSMISACS--GALDAGKYIHGFGIKVGGTLEVKVANSLI 179

Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
           +MY K G +  A ++F +  D +  ++ S I     NG + E  + F  M+  GI  D  
Sbjct: 180 NMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEG 239

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
           + +A+L AC HLG V K     H +    G   ++     ++D   + G L  +      
Sbjct: 240 TILALLQACLHLG-VGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTE 298

Query: 302 MPMKPDNVIWGTLLGACRVH 321
           +    D V W  +L     H
Sbjct: 299 VGF-ADRVAWTAMLAGYAAH 317


>gi|194696956|gb|ACF82562.1| unknown [Zea mays]
 gi|413957085|gb|AFW89734.1| selenium-binding protein-like protein [Zea mays]
          Length = 605

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 183/440 (41%), Positives = 291/440 (66%), Gaps = 2/440 (0%)

Query: 74  VSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL 133
           VSW +++GGL++ G  DDA  +F+ MP+R+LVSW  ++SG+ +  R  +AL +F EM++ 
Sbjct: 166 VSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDALEVFDEMRAR 225

Query: 134 DLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLA 193
            ++ N  +  + + AC   GAL  G  V+ ++++  I++D  L  A++DMY KCG ++ A
Sbjct: 226 GVDGNVFVAATAVVACTGAGALARGREVHRWVEQSGIQMDEKLATAVVDMYCKCGCVEEA 285

Query: 194 MQVFHSY--GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS 251
            +VF +     K ++ +   I G A++G   +A +LF  M+ +G++PD ++ + VL+AC+
Sbjct: 286 WRVFEALPLAAKGLTTWNCMIGGFAVHGRGEDALKLFGRMEREGVAPDDVTLVNVLTACA 345

Query: 252 HLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIW 311
           H G + +G +YF+ +   +GI+P+++HY CMVDL GRAG LEEA+  I  MPM+PD  + 
Sbjct: 346 HAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVIQDMPMEPDVGVL 405

Query: 312 GTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKR 371
           G L GA ++H + ++G+ IG  +IE D  + GRY+LL+N+     + E+   VR+ M +R
Sbjct: 406 GALFGASKIHGDVDLGEAIGWRVIELDPQNSGRYVLLANLLATAGRWEDVARVRRLMDER 465

Query: 372 KIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDI 431
            + +  G S+IE+ G V EF  G   H + +E+Y    +++++I+  GY  +TR V+  I
Sbjct: 466 NVSKEAGRSVIEVQGEVCEFQCGGLCHPRAEEVYAMARDMMREIRAEGYVPDTRDVLHAI 525

Query: 432 EEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISI 491
            EEEKET + YHSEKLA+AFGL+ T+PG  +RI KN+R+C DCH A K VS+VF+R+I +
Sbjct: 526 AEEEKETPLLYHSEKLAIAFGLLHTRPGDTMRITKNLRVCRDCHEATKFVSRVFERQIVV 585

Query: 492 RDRKHYHHFEDGSCSCLEYW 511
           RDR  +HHF+DG CSC +YW
Sbjct: 586 RDRNRFHHFKDGQCSCKDYW 605



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 116/252 (46%), Gaps = 48/252 (19%)

Query: 8   AYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDK 67
           A DV    +++      G   DAR +FD   + ++VSWN+M++GYV+    L+ L++FD+
Sbjct: 162 ALDVVSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDALEVFDE 221

Query: 68  MPQRNDVSWNSIL-----------GGLVR-----------------------------FG 87
           M  R  V  N  +           G L R                              G
Sbjct: 222 MRARG-VDGNVFVAATAVVACTGAGALARGREVHRWVEQSGIQMDEKLATAVVDMYCKCG 280

Query: 88  SVDDACRVFNQMP--KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
            V++A RVF  +P   + L +W  +I GFA +GR ++AL LF  M+   + P+   LV++
Sbjct: 281 CVEEAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGEDALKLFGRMEREGVAPDDVTLVNV 340

Query: 146 LSACAQLGALDYGNWVYSYIQKKC---IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           L+ACA  G L  G   ++Y+ ++     K++   C  ++D+Y + G ++ A +V      
Sbjct: 341 LTACAHAGMLSEGRHYFNYVPQRYGIEPKMEHYGC--MVDLYGRAGRLEEAKKVIQDMPM 398

Query: 203 KDVSAYTSAIFG 214
           +       A+FG
Sbjct: 399 EPDVGVLGALFG 410



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 80/171 (46%), Gaps = 14/171 (8%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESD--DLDVVSWNSMINGYVRNGEIL 59
           V ++    D  +  +++  Y  CG V +A  VF+        + +WN MI G+  +G   
Sbjct: 257 VEQSGIQMDEKLATAVVDMYCKCGCVEEAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGE 316

Query: 60  EGLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVL 110
           + LKLF +M +     +DV+  ++L      G + +    FN +P+R      +  +  +
Sbjct: 317 DALKLFGRMEREGVAPDDVTLVNVLTACAHAGMLSEGRHYFNYVPQRYGIEPKMEHYGCM 376

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161
           +  + + GR +EA  +   +Q + +EP+  +L +L  A    G +D G  +
Sbjct: 377 VDLYGRAGRLEEAKKV---IQDMPMEPDVGVLGALFGASKIHGDVDLGEAI 424



 Score = 46.6 bits (109), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 32/155 (20%), Positives = 70/155 (45%), Gaps = 2/155 (1%)

Query: 172 LDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM 231
           LD +    ++    K G  D A  +F    ++++ ++ + + G       ++A E+F+ M
Sbjct: 163 LDVVSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDALEVFDEM 222

Query: 232 KSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGL 291
           +++G+  +       + AC+  G + +G    H   +  GI+ +      +VD+  + G 
Sbjct: 223 RARGVDGNVFVAATAVVACTGAGALARG-REVHRWVEQSGIQMDEKLATAVVDMYCKCGC 281

Query: 292 LEEAENFIASMPMKPDNV-IWGTLLGACRVHRNAE 325
           +EEA     ++P+    +  W  ++G   VH   E
Sbjct: 282 VEEAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGE 316


>gi|218202317|gb|EEC84744.1| hypothetical protein OsI_31741 [Oryza sativa Indica Group]
          Length = 563

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 197/469 (42%), Positives = 292/469 (62%), Gaps = 25/469 (5%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N +I+ Y   G +L+  K+FD+  + + V+WNS+L G    G V+     F  M  R  V
Sbjct: 117 NGLIHAYAVCGSLLDARKVFDRGHEGDAVAWNSLLRGYAAAGDVNALREFFVGMQARDTV 176

Query: 106 SWVVLISGFAQNGRPKEALALFREM-QSLDLEPNSAILVSLLSACAQLGALDYGNWVYSY 164
           SW  +I+   +NG  +EA+A+FREM  S++  P+   L                      
Sbjct: 177 SWNTIIAWCVENGEYEEAIAVFREMLASMECLPDRVTL---------------------- 214

Query: 165 IQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK-DVSAYTSAIFGLAMNGHSIE 223
              K I+++  L +ALI+MY+KC  I+ A+ VF + G + +V  + + + G   NG S +
Sbjct: 215 FPGKGIEVEERLSSALINMYSKCACIEGAVHVFENLGAQMNVDTWNAMLAGFTANGCSEK 274

Query: 224 AFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMV 283
           A ELF  M+  G+ P+ I++  VL+ACSH G+VE+G   F  M  V+GI+P++ HY CMV
Sbjct: 275 ALELFARMEITGLVPNKITFNTVLNACSHGGFVEEGMGCFERMTKVYGIEPDIAHYGCMV 334

Query: 284 DLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDG 343
           DL  RAGL ++AE  I  MPMKPD  +W  L+GAC+ HRN E+G++ G+MLIE+  N   
Sbjct: 335 DLFCRAGLFDKAEKMIQMMPMKPDAAVWKALVGACKTHRNFELGRKAGHMLIEAAPNDHA 394

Query: 344 RYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQE 403
            Y+LLSNIY          +VRK M  R +++ PG S IE+DGV+HEF++GD+SH   ++
Sbjct: 395 GYVLLSNIYALDGNWTGVHKVRKLMLDRGVQKVPGSSSIEIDGVIHEFISGDKSHSSKED 454

Query: 404 IYQFWEEIVKKIKNYGYNVETRSVMFDIEEEE-KETVIGYHSEKLALAFGLICTKPGSVI 462
           IY+   E+ +++K  GY  +T  V+ DI++E+ KE+ +  HSEKLA+AFGLI T PG+ I
Sbjct: 455 IYEMLSEMCQQLKVAGYVPDTSHVLLDIDDEDVKESSLALHSEKLAIAFGLISTAPGTPI 514

Query: 463 RIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           RI KN+R+C DCH+A+KL+SK++ R I +RD   +HHF +GSCSC ++W
Sbjct: 515 RIAKNLRVCGDCHNAVKLLSKIYGRCIIVRDANRFHHFREGSCSCGDFW 563



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 116/283 (40%), Gaps = 51/283 (18%)

Query: 13  VKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRN 72
           V N LI  Y+VCG + DAR VFD   + D V+WNS++ GY   G++    + F  M  R+
Sbjct: 115 VCNGLIHAYAVCGSLLDARKVFDRGHEGDAVAWNSLLRGYAAAGDVNALREFFVGMQARD 174

Query: 73  DVSWNSILGGLVRFGSVDDACRVFNQM-------PKRSLV-------------------- 105
            VSWN+I+   V  G  ++A  VF +M       P R  +                    
Sbjct: 175 TVSWNTIIAWCVENGEYEEAIAVFREMLASMECLPDRVTLFPGKGIEVEERLSSALINMY 234

Query: 106 -----------------------SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
                                  +W  +++GF  NG  ++AL LF  M+   L PN    
Sbjct: 235 SKCACIEGAVHVFENLGAQMNVDTWNAMLAGFTANGCSEKALELFARMEITGLVPNKITF 294

Query: 143 VSLLSACAQLGALDYGNWVYSYIQK-KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
            ++L+AC+  G ++ G   +  + K   I+ D      ++D++ + G  D A ++     
Sbjct: 295 NTVLNACSHGGFVEEGMGCFERMTKVYGIEPDIAHYGCMVDLFCRAGLFDKAEKMIQMMP 354

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYI 244
            K  +A   A+ G      + E      +M  +    D   Y+
Sbjct: 355 MKPDAAVWKALVGACKTHRNFELGRKAGHMLIEAAPNDHAGYV 397



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/211 (21%), Positives = 85/211 (40%), Gaps = 17/211 (8%)

Query: 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
           P+ AL LF  +     +P+       L  CA+         ++S+  K+       +C  
Sbjct: 59  PQLALRLFDHLLRSGADPDHVAYALALGRCARGRDHRAAAQLHSHAAKRGAASHRRVCNG 118

Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
           LI  YA CGS+  A +VF    + D  A+ S + G A  G      E F  M+++    D
Sbjct: 119 LIHAYAVCGSLLDARKVFDRGHEGDAVAWNSLLRGYAAAGDVNALREFFVGMQAR----D 174

Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSM-------------FDVHGIKPELDHYACMVDLL 286
           ++S+  +++ C   G  E+    F  M             F   GI+ E    + ++++ 
Sbjct: 175 TVSWNTIIAWCVENGEYEEAIAVFREMLASMECLPDRVTLFPGKGIEVEERLSSALINMY 234

Query: 287 GRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
            +   +E A +   ++  + +   W  +L  
Sbjct: 235 SKCACIEGAVHVFENLGAQMNVDTWNAMLAG 265


>gi|242037817|ref|XP_002466303.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
 gi|241920157|gb|EER93301.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
          Length = 606

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/432 (46%), Positives = 273/432 (63%), Gaps = 18/432 (4%)

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
           V FG  D  C          +VS+  +I+   ++ RP EAL LFREMQ   L+P S  ++
Sbjct: 189 VMFGGTDGGC----------VVSYNAMIAAAVRSSRPGEALVLFREMQGKGLKPTSVTVI 238

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSIL--CAALIDMYAKCGSIDLAMQVFHSYG 201
           S+LSACA LGAL+ G WV+ Y++K  I L S++    ALIDMYAKCGS++ A+ VF    
Sbjct: 239 SVLSACALLGALELGRWVHDYVRK--IGLGSLVKVSTALIDMYAKCGSLEDAIDVFQGME 296

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
            KD  A++  I   A +G+  EA  LFE MK +G+ PD I+++ VL ACSH G V +G  
Sbjct: 297 SKDRQAWSVMIVAYANHGYGREAISLFEEMKKEGMKPDDITFLGVLYACSHSGLVSEGLQ 356

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           YF  M D HGI P + HY C+ DLL R+G LE A  FI  +P+ P  ++W TLL AC  H
Sbjct: 357 YFDDMKD-HGIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTPILWRTLLSACGGH 415

Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
            + E+G+R+   +++ D +H G Y++ SN+   T   E    VRK M ++ + + PGCS 
Sbjct: 416 GDFELGKRVFERILKLDDSHGGDYVIFSNLCANTGYWEEMNMVRKLMSEKGVVKVPGCSS 475

Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIE--EEEKETV 439
           IE+D  VHEF AGD  H K+QE  +  +E++ ++K  GY V   S +F +E  EEEK   
Sbjct: 476 IEIDNTVHEFFAGDGRHPKSQEARKMVDEVIDQLKLVGY-VPNTSHVFHVEMGEEEKAIS 534

Query: 440 IGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHH 499
           + YHSEKLA+AFGL+ T PG+ +R+VKN+R+C DCHS  KLVS VF R+I +RD   +HH
Sbjct: 535 LKYHSEKLAIAFGLLNTAPGATLRVVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHH 594

Query: 500 FEDGSCSCLEYW 511
           FE+G CSC +YW
Sbjct: 595 FEEGICSCGDYW 606



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 8/236 (3%)

Query: 92  ACRVFNQMPKRSLVSWV-VLISGFAQNGRPKE-----ALALFREMQSLDLEPNSAILVSL 145
           A +VF+++P  +   W   L+ G+A++  P       A+ +F  M    + P++   VSL
Sbjct: 80  ARQVFDRVPHPADAVWYNTLLRGYARSSNPSSSEAAAAVRVFVRMLEEGVAPDTYTFVSL 139

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
           L ACA   A + G   ++   K        +   LI+MYA+CG    A  +F       V
Sbjct: 140 LKACAAARAGEEGRQAHALAVKLGAADHDYVRPTLINMYAECGDARAARVMFGGTDGGCV 199

Query: 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHS 265
            +Y + I     +    EA  LF  M+ KG+ P S++ I+VLSAC+ LG +E G  + H 
Sbjct: 200 VSYNAMIAAAVRSSRPGEALVLFREMQGKGLKPTSVTVISVLSACALLGALELG-RWVHD 258

Query: 266 MFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
                G+   +     ++D+  + G LE+A +    M  K D   W  ++ A   H
Sbjct: 259 YVRKIGLGSLVKVSTALIDMYAKCGSLEDAIDVFQGMESK-DRQAWSVMIVAYANH 313



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 103/235 (43%), Gaps = 41/235 (17%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + VK   A   +V+ +LI  Y+ CG  R AR +F  +D   VVS+N+MI   VR+    E
Sbjct: 158 LAVKLGAADHDYVRPTLINMYAECGDARAARVMFGGTDGGCVVSYNAMIAAAVRSSRPGE 217

Query: 61  GLKLFDKMPQRNDVSWNSI-----------------------------LGGLVRF----- 86
            L LF +M Q   +   S+                             LG LV+      
Sbjct: 218 ALVLFREM-QGKGLKPTSVTVISVLSACALLGALELGRWVHDYVRKIGLGSLVKVSTALI 276

Query: 87  ------GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
                 GS++DA  VF  M  +   +W V+I  +A +G  +EA++LF EM+   ++P+  
Sbjct: 277 DMYAKCGSLEDAIDVFQGMESKDRQAWSVMIVAYANHGYGREAISLFEEMKKEGMKPDDI 336

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ 195
             + +L AC+  G +  G   +  ++   I         + D+ A+ G ++ A +
Sbjct: 337 TFLGVLYACSHSGLVSEGLQYFDDMKDHGIVPGIKHYGCVTDLLARSGQLERAYK 391


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/548 (37%), Positives = 318/548 (58%), Gaps = 41/548 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDD-LDVVSWNSMINGYVRNGEILEG 61
           +K+ F  D  V  +L+   S C  + DA  +F   ++  +VVSW +MI+G ++NG   + 
Sbjct: 322 LKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQA 381

Query: 62  LKLFDKMP-----------------------------------QRNDVSWNSILGGLVRF 86
           + LF +M                                    +R+     ++L   V+ 
Sbjct: 382 VNLFSQMRREGVKPNHFTYSAILTVHYPVFVSEMHAEVIKTNYERSSSVGTALLDAYVKL 441

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           G+  DA +VF  +  + L++W  +++G+AQ G  +EA  LF ++    ++PN     S++
Sbjct: 442 GNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVI 501

Query: 147 SACAQ-LGALDYGNWVYSYIQKKCIKLDSILC--AALIDMYAKCGSIDLAMQVFHSYGDK 203
           +ACA    A + G   ++Y  K  ++L++ LC  +AL+ MYAK G+ID A +VF    ++
Sbjct: 502 NACASPTAAAEQGKQFHAYAIK--MRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKER 559

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           D+ ++ S I G + +G + +A E+F+ M+ + +  D++++I V++AC+H G VEKG  YF
Sbjct: 560 DLVSWNSMISGYSQHGQAKKALEVFDEMQKRNMDVDAVTFIGVITACTHAGLVEKGQKYF 619

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
           +SM + H I P + HY+CM+DL  RAG+LE+A   I  MP  P   +W TLLGA RVHRN
Sbjct: 620 NSMINDHHINPTMKHYSCMIDLYSRAGMLEKAMGIINEMPFPPGATVWRTLLGAARVHRN 679

Query: 324 AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE 383
            E+G+     LI         Y+LLSN+Y      +    VRK M KRK+K+ PG S IE
Sbjct: 680 VELGELAAEKLISLQPEDSAAYVLLSNMYAAAGNWQERTNVRKLMDKRKVKKEPGYSWIE 739

Query: 384 LDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYH 443
           +    + FLAGD +H  + +IY    E+  ++K+ GY  +T++V  DIE+E+KET++ +H
Sbjct: 740 VKNKTYSFLAGDLTHPLSNQIYSKLSELSIRLKDAGYQPDTKNVFHDIEDEQKETILSHH 799

Query: 444 SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
           SE+LA+AFGLI T P   I+IVKN+R+C DCH+  KLVS V +R I +RD   +HHF+DG
Sbjct: 800 SERLAIAFGLIATPPEIPIQIVKNLRVCGDCHNFTKLVSLVEQRYIVVRDSNRFHHFKDG 859

Query: 504 SCSCLEYW 511
            CSC +YW
Sbjct: 860 LCSCGDYW 867



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 103/370 (27%), Positives = 178/370 (48%), Gaps = 55/370 (14%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           MVVK+ F   + V NSLI  YS  G +RDAR VFD+ +  D V+WNSMI GYVRNG+ LE
Sbjct: 219 MVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLE 278

Query: 61  GLKLFDKMP---------------------------------------QRNDVSWNSILG 81
             ++F+KM                                          + +   +++ 
Sbjct: 279 VFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMV 338

Query: 82  GLVRFGSVDDACRVFNQMPK-RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
            L +   +DDA  +F+ M + +++VSW  +ISG  QNG   +A+ LF +M+   ++PN  
Sbjct: 339 ALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHF 398

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
              ++L+    +    + + +++ + K   +  S +  AL+D Y K G+   A++VF   
Sbjct: 399 TYSAILTVHYPV----FVSEMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEII 454

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC-SHLGWVEKG 259
             KD+ A+++ + G A  G + EA +LF  +  +GI P+  ++ +V++AC S     E+G
Sbjct: 455 EAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQG 514

Query: 260 FYYFHSMFDVHGIKPELDHYAC----MVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
                  F  + IK  L++  C    +V +  + G ++ A         + D V W +++
Sbjct: 515 -----KQFHAYAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKER-DLVSWNSMI 568

Query: 316 GACRVHRNAE 325
                H  A+
Sbjct: 569 SGYSQHGQAK 578



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 129/286 (45%), Gaps = 40/286 (13%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNG------ 56
           VK      V V  SL+  Y     V D R VFDE  + +VVSW S++ GY  NG      
Sbjct: 120 VKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVW 179

Query: 57  EILEGLKLFDKMPQRNDVS---------------------------------WNSILGGL 83
           E+   ++    +P R  VS                                 +NS++   
Sbjct: 180 ELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLY 239

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
            R G + DA  VF++M  R  V+W  +I+G+ +NG+  E   +F +MQ   ++P      
Sbjct: 240 SRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFA 299

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD- 202
           S++ +CA L  L     +     K     D I+  AL+   +KC  +D A+ +F    + 
Sbjct: 300 SVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEG 359

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248
           K+V ++T+ I G   NG + +A  LF  M+ +G+ P+  +Y A+L+
Sbjct: 360 KNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILT 405



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 95/177 (53%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136
            S++   ++  +V+D  RVF++M +R++VSW  L++G++ NG       LF +MQ   + 
Sbjct: 132 TSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWELFCQMQYEGVL 191

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
           PN   + ++++A    G +  G  V++ + K   +    +  +LI +Y++ G +  A  V
Sbjct: 192 PNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDV 251

Query: 197 FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL 253
           F     +D   + S I G   NG  +E FE+F  M+  G+ P  +++ +V+ +C+ L
Sbjct: 252 FDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASL 308



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 121/234 (51%), Gaps = 16/234 (6%)

Query: 92  ACRVFNQMPKR--SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
           A  +F+++P R  +L     L+  ++++ + KEAL LF  +    L+P+ + L  + + C
Sbjct: 44  AHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNIC 103

Query: 150 AQLGALD--YGNWVYSYIQKKCIKLDSI----LCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           A  G+LD   G  V+     +C+K   +    +  +L+DMY K  +++   +VF   G++
Sbjct: 104 A--GSLDGKLGRQVHC----QCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGER 157

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           +V ++TS + G + NG     +ELF  M+ +G+ P+  +   V++A  + G V  G    
Sbjct: 158 NVVSWTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGL-QV 216

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
           H+M   HG +  +  +  ++ L  R G+L +A +    M ++ D V W +++  
Sbjct: 217 HAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIR-DWVTWNSMIAG 269



 Score = 41.2 bits (95), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 78/171 (45%), Gaps = 20/171 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESD----DLDVVSWNSMINGYVRNGE 57
           V K     D+   NS+I  YS  G+ + A  VFDE      D+D V++  +I      G 
Sbjct: 552 VFKRQKERDLVSWNSMISGYSQHGQAKKALEVFDEMQKRNMDVDAVTFIGVITACTHAGL 611

Query: 58  ILEGLKLFDKMPQRNDVS-----WNSILGGLVRFGSVDDACRVFNQMP-KRSLVSWVVLI 111
           + +G K F+ M   + ++     ++ ++    R G ++ A  + N+MP       W  L+
Sbjct: 612 VEKGQKYFNSMINDHHINPTMKHYSCMIDLYSRAGMLEKAMGIINEMPFPPGATVWRTLL 671

Query: 112 SGFAQNGRPKEALALFRE-MQSLDLEPNSA-ILVSLLSACAQLGALDYGNW 160
            G A+  R  E   L  E + SL  E ++A +L+S + A A       GNW
Sbjct: 672 -GAARVHRNVELGELAAEKLISLQPEDSAAYVLLSNMYAAA-------GNW 714


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/547 (37%), Positives = 319/547 (58%), Gaps = 39/547 (7%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           ++ F  D  V N+ +  Y+ C  +  A  VF   +   V SWN++I  + +NG   + L 
Sbjct: 429 RHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLD 488

Query: 64  LFDKM------PQRNDVS--------------WNSILGGLVRFG------------SVDD 91
           LF  M      P R  +                  I G ++R G            S+  
Sbjct: 489 LFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYI 548

Query: 92  ACR-------VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
            C        +F++M  +SLV W V+I+GF+QN  P EAL  FR+M S  ++P    +  
Sbjct: 549 QCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTG 608

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           +L AC+Q+ AL  G  V+S+  K  +  D+ +  ALIDMYAKCG ++ +  +F    +KD
Sbjct: 609 VLGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKD 668

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
            + +   I G  ++GH ++A ELFE M++KG  PDS +++ VL AC+H G V +G  Y  
Sbjct: 669 EAVWNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLG 728

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
            M +++G+KP+L+HYAC+VD+LGRAG L EA   +  MP +PD+ IW +LL +CR + + 
Sbjct: 729 QMQNLYGVKPKLEHYACVVDMLGRAGQLTEALKLVNEMPDEPDSGIWSSLLSSCRNYGDL 788

Query: 325 EMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIEL 384
           E+G+ +   L+E + N    Y+LLSN+Y    K +   +VR+ M++  + +  GCS IE+
Sbjct: 789 EIGEEVSKKLLELEPNKAENYVLLSNLYAGLGKWDEVRKVRQRMKENGLHKDAGCSWIEI 848

Query: 385 DGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHS 444
            G+V+ FL  D S  ++++I Q W ++ KKI   GY  +T  V+ ++EEE K  ++  HS
Sbjct: 849 GGMVYRFLVSDGSLSESKKIQQTWIKLEKKISKIGYKPDTSCVLHELEEEGKIKILKSHS 908

Query: 445 EKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGS 504
           EKLA++FGL+ T  G+ +R+ KN+RIC DCH+A+KLVSKV KR I +RD K +HHF++G 
Sbjct: 909 EKLAISFGLLNTAKGTTLRVCKNLRICVDCHNAIKLVSKVVKRDIIVRDNKRFHHFKNGL 968

Query: 505 CSCLEYW 511
           C+C ++W
Sbjct: 969 CTCGDFW 975



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/385 (26%), Positives = 172/385 (44%), Gaps = 48/385 (12%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +  K     +V V NSL+  YS CG + +AR +FD +   +VVSWN++I GY + G+   
Sbjct: 324 LAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRG 383

Query: 61  GLKLFDKMPQ----------------------------------------RNDVSWNSIL 80
             +L  +M +                                        ++++  N+ +
Sbjct: 384 VFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFV 443

Query: 81  GGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
               +  S+D A RVF  M  +++ SW  LI   AQNG P ++L LF  M    ++P+  
Sbjct: 444 AAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRF 503

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
            + SLL ACA+L  L  G  ++ ++ +  ++LD  +  +L+ +Y +C S+ L   +F   
Sbjct: 504 TIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKM 563

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
            +K +  +   I G + N    EA + F  M S GI P  I+   VL ACS +  +  G 
Sbjct: 564 ENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLG- 622

Query: 261 YYFHSMFDVHGIKPELDHYAC-MVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACR 319
              HS F +     E     C ++D+  + G +E+++N    +  K D  +W  ++    
Sbjct: 623 KEVHS-FALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEK-DEAVWNVIIAGYG 680

Query: 320 VHRNAEMGQRIGNMLIESDQNHDGR 344
           +H +          L E  QN  GR
Sbjct: 681 IHGHGLKAIE----LFELMQNKGGR 701



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 96/384 (25%), Positives = 170/384 (44%), Gaps = 62/384 (16%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DV +   +I  YS CG   D+R VFD + + D+  +N++++GY RN    + + LF ++ 
Sbjct: 127 DVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELL 186

Query: 70  QRNDVS----------------------------------------WNSILGGLVRFGSV 89
              D++                                         N+++    + G V
Sbjct: 187 SATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFV 246

Query: 90  DDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM---QSLDLEPNSAILVSLL 146
           + A +VF  M  R+LVSW  ++   ++NG   E   +F+ +   +   L P+ A +V+++
Sbjct: 247 ESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVI 306

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
            ACA +G +  G  V+    K  I  +  +  +L+DMY+KCG +  A  +F   G K+V 
Sbjct: 307 PACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVV 366

Query: 207 AYTSAIFGLAMNGHSIEAFELFENM-KSKGISPDSISYIAVLSACSHLGWVEKGFYYFHS 265
           ++ + I+G +  G     FEL + M + + +  + ++ + VL ACS       G +   S
Sbjct: 367 SWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACS-------GEHQLLS 419

Query: 266 MFDVHG-------IKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
           + ++HG       +K EL   A  V    +   L+ AE     M  K  +  W  L+GA 
Sbjct: 420 LKEIHGYAFRHGFLKDELVANA-FVAAYAKCSSLDCAERVFCGMEGKTVSS-WNALIGAH 477

Query: 319 RVHRNAEMGQRIGNMLIESDQNHD 342
              +N   G+ +   L+  D   D
Sbjct: 478 A--QNGFPGKSLDLFLVMMDSGMD 499



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 130/250 (52%), Gaps = 7/250 (2%)

Query: 71  RNDVSWNS-ILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE 129
           RNDV  ++ I+      GS  D+  VF+   ++ L  +  L+SG+++N   ++A++LF E
Sbjct: 125 RNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLE 184

Query: 130 MQS-LDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCG 188
           + S  DL P++  L  +  ACA +  ++ G  V++   K     D+ +  ALI MY KCG
Sbjct: 185 LLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCG 244

Query: 189 SIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM---KSKGISPDSISYIA 245
            ++ A++VF +  ++++ ++ S ++  + NG   E   +F+ +   + +G+ PD  + + 
Sbjct: 245 FVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVT 304

Query: 246 VLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMK 305
           V+ AC+ +G V  G       F + GI  E+     +VD+  + G L EA      M   
Sbjct: 305 VIPACAAVGEVRMGMVVHGLAFKL-GITEEVTVNNSLVDMYSKCGYLGEARALF-DMNGG 362

Query: 306 PDNVIWGTLL 315
            + V W T++
Sbjct: 363 KNVVSWNTII 372



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 131/294 (44%), Gaps = 45/294 (15%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMIN------------------- 50
           D FV N+LI  Y  CG V  A  VF+   + ++VSWNS++                    
Sbjct: 229 DAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLL 288

Query: 51  ------------------------GYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRF 86
                                   G VR G ++ GL     + +   V+ NS++    + 
Sbjct: 289 ISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVN-NSLVDMYSKC 347

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD-LEPNSAILVSL 145
           G + +A  +F+    +++VSW  +I G+++ G  +    L +EMQ  + +  N   ++++
Sbjct: 348 GYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNV 407

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
           L AC+    L     ++ Y  +     D ++  A +  YAKC S+D A +VF     K V
Sbjct: 408 LPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTV 467

Query: 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
           S++ + I   A NG   ++ +LF  M   G+ PD  +  ++L AC+ L ++  G
Sbjct: 468 SSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCG 521



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 86/180 (47%), Gaps = 16/180 (8%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +K   + D FV  +LI  Y+ CG +  ++ +FD  ++ D   WN +I GY  +G  L+ +
Sbjct: 630 LKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKAI 689

Query: 63  KLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMP-----KRSLVSWVVLISG 113
           +LF+ M  +    +  ++  +L      G V +  +   QM      K  L  +  ++  
Sbjct: 690 ELFELMQNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLGQMQNLYGVKPKLEHYACVVDM 749

Query: 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD 173
             + G+  EAL L  EM     EP+S I  SLLS+C   G L+ G  V     KK ++L+
Sbjct: 750 LGRAGQLTEALKLVNEMPD---EPDSGIWSSLLSSCRNYGDLEIGEEV----SKKLLELE 802



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/269 (21%), Positives = 111/269 (41%), Gaps = 48/269 (17%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++N    D F+  SL+  Y  C  +   + +FD+ ++  +V WN MI G+ +N    E 
Sbjct: 528 MLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEA 587

Query: 62  LKLFDKM------PQRNDVSWNSILGGL-------------------------------- 83
           L  F +M      PQ  +++   +LG                                  
Sbjct: 588 LDTFRQMLSGGIKPQ--EIAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALI 645

Query: 84  ---VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
               + G ++ +  +F+++ ++    W V+I+G+  +G   +A+ LF  MQ+    P+S 
Sbjct: 646 DMYAKCGCMEQSQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSF 705

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKC---IKLDSILCAALIDMYAKCGSIDLAMQVF 197
             + +L AC   G +  G      +Q       KL+   C  ++DM  + G +  A+++ 
Sbjct: 706 TFLGVLIACNHAGLVTEGLKYLGQMQNLYGVKPKLEHYAC--VVDMLGRAGQLTEALKLV 763

Query: 198 HSYGDKDVSAYTSAIFGLAMNGHSIEAFE 226
           +   D+  S   S++     N   +E  E
Sbjct: 764 NEMPDEPDSGIWSSLLSSCRNYGDLEIGE 792



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 4/176 (2%)

Query: 145 LLSACAQLGALDYGNWVYSYIQKKC-IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           LL AC     +  G  V++ +     ++ D +L   +I MY+ CGS   +  VF +  +K
Sbjct: 98  LLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEK 157

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELF-ENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           D+  Y + + G + N    +A  LF E + +  ++PD+ +   V  AC+ +  VE G   
Sbjct: 158 DLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAV 217

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
                   G        A ++ + G+ G +E A     +M  + + V W +++ AC
Sbjct: 218 HALALKAGGFSDAFVGNA-LIAMYGKCGFVESAVKVFETMRNR-NLVSWNSVMYAC 271


>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
 gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
          Length = 650

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 215/538 (39%), Positives = 314/538 (58%), Gaps = 39/538 (7%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVR-NGEILEGLKLFDKMP 69
           +FV NSL+  Y+  G + DA  +FD   + +VV+W +++      +G   E L+    M 
Sbjct: 115 IFVSNSLVSMYAKFGLLDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMW 174

Query: 70  Q----RNDVSWNSILG------------------GL--------------VRFGSVDDAC 93
           +     N  +++S+LG                  GL              ++ G +D   
Sbjct: 175 RDGVAPNAYTFSSVLGACGTPGVLAALHASTVKVGLDSDVFVRSSLIDAYMKLGDLDGGR 234

Query: 94  RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153
           RVF++M  R LV W  +I+GFAQ+G    A+ LF  M+      N   L S+L AC  + 
Sbjct: 235 RVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLRACTGMV 294

Query: 154 ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIF 213
            L+ G  V++++ K   + D IL  AL+DMY KCGS++ A  +FH    +DV ++++ I 
Sbjct: 295 MLEAGRQVHAHVLK--YERDLILHNALLDMYCKCGSLEDAEALFHRMPQRDVISWSTMIS 352

Query: 214 GLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIK 273
           GLA NG S EA  +F+ MKS+G++P+ I+ + VL ACSH G VE G+YYF SM  + GI+
Sbjct: 353 GLAQNGKSAEALRVFDLMKSEGVAPNRITMVGVLFACSHAGLVEDGWYYFRSMKKLFGIQ 412

Query: 274 PELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNM 333
           PE +H+ CMVDLLGRAG L+EA  FI  M ++PD VIW TLLGACR+H++  +       
Sbjct: 413 PEREHHNCMVDLLGRAGKLDEAVEFIRDMNLEPDAVIWRTLLGACRMHKSGNLAAYAARE 472

Query: 334 LIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLA 393
           +++ + +  G  +LLSN Y +  +  +AE+  K MR R +K+ PG S IEL+  VH F+A
Sbjct: 473 ILKLEPDDQGARVLLSNTYADLRQWTDAEKSWKAMRDRGMKKEPGRSWIELEKHVHVFIA 532

Query: 394 GDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGL 453
           GD SH  +  I Q    ++ +I   GY  +T  V+ D+  E+KE ++ YHSEK+A+AFG 
Sbjct: 533 GDLSHPCSDTIVQELNRLIGRISALGYVPQTEFVLQDLAIEQKEDLLKYHSEKMAIAFGT 592

Query: 454 ICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           +    G  IRI+KN+RIC DCH+  KLVSK   R I IRD   +HHF+DG+CSC +YW
Sbjct: 593 MHAVGGKPIRIMKNLRICGDCHAFAKLVSKSEGRMIIIRDPVRFHHFQDGACSCGDYW 650



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 116/233 (49%), Gaps = 40/233 (17%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
            VK     DVFV++SLI  Y   G +   R VFDE    D+V WNS+I G+ ++G+ +  
Sbjct: 205 TVKVGLDSDVFVRSSLIDAYMKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGA 264

Query: 62  LKLFDKMP-------------------------------------QRNDVSWNSILGGLV 84
           ++LF +M                                      +R+ +  N++L    
Sbjct: 265 IELFMRMKDAGFSANQGTLTSVLRACTGMVMLEAGRQVHAHVLKYERDLILHNALLDMYC 324

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
           + GS++DA  +F++MP+R ++SW  +ISG AQNG+  EAL +F  M+S  + PN   +V 
Sbjct: 325 KCGSLEDAEALFHRMPQRDVISWSTMISGLAQNGKSAEALRVFDLMKSEGVAPNRITMVG 384

Query: 145 LLSACAQLGALDYGNWVYSYIQKKC--IKLDSILCAALIDMYAKCGSIDLAMQ 195
           +L AC+  G ++ G W Y    KK   I+ +      ++D+  + G +D A++
Sbjct: 385 VLFACSHAGLVEDG-WYYFRSMKKLFGIQPEREHHNCMVDLLGRAGKLDEAVE 436



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 90/179 (50%), Gaps = 20/179 (11%)

Query: 7   FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFD 66
           +  D+ + N+L+  Y  CG + DA  +F      DV+SW++MI+G  +NG+  E L++FD
Sbjct: 309 YERDLILHNALLDMYCKCGSLEDAEALFHRMPQRDVISWSTMISGLAQNGKSAEALRVFD 368

Query: 67  KMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQM-------PKRSLVSWVVLISGFA 115
            M       N ++   +L      G V+D    F  M       P+R   + +V + G A
Sbjct: 369 LMKSEGVAPNRITMVGVLFACSHAGLVEDGWYYFRSMKKLFGIQPEREHHNCMVDLLGRA 428

Query: 116 QNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDS 174
             G+  EA+   R+M   +LEP++ I  +LL AC    +   GN + +Y  ++ +KL+ 
Sbjct: 429 --GKLDEAVEFIRDM---NLEPDAVIWRTLLGACRMHKS---GN-LAAYAAREILKLEP 478


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/514 (39%), Positives = 291/514 (56%), Gaps = 35/514 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VVK     D  V  +LI  Y  CGR  +   VFDES  +DV S N+++ G  RN ++ E 
Sbjct: 182 VVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQVSEA 241

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQN 117
           L+LF +   R    N VSW SI+           AC V                    QN
Sbjct: 242 LRLFREFVGRGIELNVVSWTSIV-----------ACCV--------------------QN 270

Query: 118 GRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILC 177
           GR  EA+ LFREMQS  +EPNS  +  +L A A + AL +G   + +  +K    D  + 
Sbjct: 271 GRDLEAVDLFREMQSEGIEPNSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVG 330

Query: 178 AALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGIS 237
           +AL+DMYAKCG +  A  +F +   ++V ++ + I G AM+G +  A  LF +M+S    
Sbjct: 331 SALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEK 390

Query: 238 PDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAEN 297
           PD +++  VL ACS  GW E+G  YF+ M   HGI P ++HYACMV LLGRAG L++A +
Sbjct: 391 PDLVTFTCVLGACSQAGWTEEGRSYFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYD 450

Query: 298 FIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLK 357
            I  MP +PD  IWG+LLG+CRVH N  + +     L + +  + G Y+LLSNIY     
Sbjct: 451 IINQMPFEPDGCIWGSLLGSCRVHGNVVLAEVAAENLFQLEPENAGNYVLLSNIYASKKM 510

Query: 358 GENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKN 417
            +    +R  M+   +K+  GCS IE+   VH  LAGD SH     I +  + +  +++ 
Sbjct: 511 WDGVNRLRDMMKTVGLKKEKGCSWIEIKNKVHMLLAGDSSHPMMAAITEKLKHLTMEMRR 570

Query: 418 YGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSA 477
            G+   T  V+ D+EE+EK+ ++  HSEKLA+A GLI T  G+ ++++KN+RIC DCH A
Sbjct: 571 LGFAPSTDYVLHDVEEQEKDDILSVHSEKLAVALGLISTSHGTPLQVIKNLRICGDCHEA 630

Query: 478 MKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           MK +S   +R+I +RD   +HHF+DG CSC +YW
Sbjct: 631 MKFISSFERREIYVRDTNRFHHFKDGKCSCADYW 664



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 152/341 (44%), Gaps = 41/341 (12%)

Query: 41  DVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMP 100
           D    +S+++ Y+R G   +   + D MP R  V W++++      G  + A  +  +M 
Sbjct: 54  DAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERMR 113

Query: 101 ----KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALD 156
               + ++++W  L+SG  ++GR ++A+     M      P++  +   LSA   +G + 
Sbjct: 114 SDGVEPNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVA 173

Query: 157 YGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLA 216
            G  ++ Y+ K   +LD+ +  ALIDMY KCG  D  ++VF      DV++  + + GL+
Sbjct: 174 VGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLS 233

Query: 217 -----------------------------------MNGHSIEAFELFENMKSKGISPDSI 241
                                               NG  +EA +LF  M+S+GI P+S+
Sbjct: 234 RNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSV 293

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
           +   VL A +++  +  G    H      G   ++   + +VD+  + G + +A     +
Sbjct: 294 TIPCVLPAFANIAALMHG-RSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEA 352

Query: 302 MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD 342
           MP + + V W  ++G   +H  AE   R+   +  S +  D
Sbjct: 353 MPYR-NVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPD 392


>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 592

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/438 (43%), Positives = 295/438 (67%), Gaps = 5/438 (1%)

Query: 79  ILGGLVRF----GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD 134
           +   LV F    G V  A +VF++MP++++V+W  +ISG+ QNG  KEA+ LF  MQ L 
Sbjct: 155 VQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQDLG 214

Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
           ++P+S+  VSLLSACAQ+GA+  G WV+ YI + C  L+ +L  AL++MY++CG++  A 
Sbjct: 215 VKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGNVSKAR 274

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
           +VF S  +K++ A+T+ I G  M+GH  +A ELF  M   G  P++++++AVLSAC+H G
Sbjct: 275 EVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSACAHAG 334

Query: 255 WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKPDNVIWGT 313
            V++G   F +M   +G+ P ++H  CMVD+LGRAG L EA  FI +  P +P   +W  
Sbjct: 335 LVDEGRQIFTTMKQEYGLVPSVEHQVCMVDMLGRAGHLNEAYQFIKNTSPKEPAPAVWTA 394

Query: 314 LLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKI 373
           +LGAC++H+N ++G  +   L+  +  + G Y++LSNIY    + +  E++R  M + ++
Sbjct: 395 MLGACKMHKNFDLGVEVAEHLLSIEPENPGHYVMLSNIYALAGRMDRVEKIRNIMIRNRL 454

Query: 374 KRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEE 433
           K+  G S I++D  V+ F  GD+SH KT +IY + +E++ + +  GY   + SVM ++EE
Sbjct: 455 KKEVGYSTIDVDHKVYLFSMGDKSHPKTNQIYLYLDELMSRCREAGYIPASESVMHEVEE 514

Query: 434 EEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRD 493
           EE+E  + YHSEKLA+AFGL+ T  G  IRIVKN+R+C DCH+A+K +S +  R+I++RD
Sbjct: 515 EEREYALRYHSEKLAIAFGLLKTGSGVAIRIVKNLRMCEDCHTAIKYISIIANREINVRD 574

Query: 494 RKHYHHFEDGSCSCLEYW 511
           R  +HHF+DGSCSC +YW
Sbjct: 575 RLRFHHFKDGSCSCQDYW 592



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 139/286 (48%), Gaps = 48/286 (16%)

Query: 7   FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFD 66
           +  D +V+ +L+ FY+  G V  AR VFD+  +  VV+WNSMI+GY +NG   E ++LF 
Sbjct: 149 YGLDAYVQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFF 208

Query: 67  KMPQ----------------------------------RNDVSWNSILGGLV-----RFG 87
            M                                    RN    N +LG  +     R G
Sbjct: 209 LMQDLGVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCG 268

Query: 88  SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLS 147
           +V  A  VF+ M ++++V+W  +ISG+  +G   +A+ LF EM      PN+   V++LS
Sbjct: 269 NVSKAREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLS 328

Query: 148 ACAQLGALDYGNWVYSYIQKKCIKLDSI---LCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           ACA  G +D G  +++ ++++   + S+   +C  ++DM  + G ++ A Q   +   K+
Sbjct: 329 ACAHAGLVDEGRQIFTTMKQEYGLVPSVEHQVC--MVDMLGRAGHLNEAYQFIKNTSPKE 386

Query: 205 VSA--YTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248
            +   +T+ +    M+ +     E+ E++ S  I P++  +  +LS
Sbjct: 387 PAPAVWTAMLGACKMHKNFDLGVEVAEHLLS--IEPENPGHYVMLS 430



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 160/356 (44%), Gaps = 22/356 (6%)

Query: 94  RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153
           R+F  +PK     +  LI+  ++   P+E+L  +R M   ++  ++    +++ + A L 
Sbjct: 73  RLFFSIPKPDTFLFHSLITLTSKFSFPQESLLCYRRMLLANISSSNYTFSAVIKSSADLT 132

Query: 154 ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIF 213
           A   G  ++ ++      LD+ + AAL+  YAK G + +A +VF    +K V A+ S I 
Sbjct: 133 AFSIGETIHCHVYICGYGLDAYVQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMIS 192

Query: 214 GLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF----YYFHSMFDV 269
           G   NG   EA ELF  M+  G+ PDS +++++LSAC+ +G +  GF    Y   + FD+
Sbjct: 193 GYEQNGFGKEAVELFFLMQDLGVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDL 252

Query: 270 HGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQR 329
           + +         ++++  R G + +A     SM  K + V W  ++    +H +      
Sbjct: 253 NVVLG-----TALMNMYSRCGNVSKAREVFDSMEEK-NIVAWTAMISGYGMHGHGSQAIE 306

Query: 330 IGN-MLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS----LIEL 384
           + N M  +  + ++  ++ + +        +   ++  TM K++    P       ++++
Sbjct: 307 LFNEMSFDGPRPNNVTFVAVLSACAHAGLVDEGRQIFTTM-KQEYGLVPSVEHQVCMVDM 365

Query: 385 DGV------VHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEE 434
            G        ++F+      E    ++       K  KN+   VE    +  IE E
Sbjct: 366 LGRAGHLNEAYQFIKNTSPKEPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSIEPE 421



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 83/166 (50%), Gaps = 11/166 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           + +N F  +V +  +L+  YS CG V  AR VFD  ++ ++V+W +MI+GY  +G   + 
Sbjct: 245 IARNCFDLNVVLGTALMNMYSRCGNVSKAREVFDSMEEKNIVAWTAMISGYGMHGHGSQA 304

Query: 62  LKLFDKM----PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLIS 112
           ++LF++M    P+ N+V++ ++L      G VD+  ++F  M +      S+   V ++ 
Sbjct: 305 IELFNEMSFDGPRPNNVTFVAVLSACAHAGLVDEGRQIFTTMKQEYGLVPSVEHQVCMVD 364

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
              + G   EA    +       EP  A+  ++L AC      D G
Sbjct: 365 MLGRAGHLNEAYQFIKNTS--PKEPAPAVWTAMLGACKMHKNFDLG 408


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 193/468 (41%), Positives = 287/468 (61%), Gaps = 4/468 (0%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N++I  Y + G++    K+F +MP ++ ++WN++L G V  G +++A   F QMP+++L+
Sbjct: 332 NTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLL 391

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           +W V+ISG AQNG  ++AL LF +M+    EPN       ++AC+ LGAL+ G  +++ I
Sbjct: 392 TWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQI 451

Query: 166 QKKCIKLDSILCA--ALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIE 223
               +  DS L    A+I MYA+CG ++ A  +F +    D  ++ S I  L  +GH ++
Sbjct: 452 VH--LGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVK 509

Query: 224 AFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMV 283
           A EL+E M  +GI PD  +++ VLSACSH G VE+G  YF+SM + +GI P  DHYA M+
Sbjct: 510 AIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYARMI 569

Query: 284 DLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDG 343
           DL  RAG   +A+N I SMP +    IW  LL  CR H N ++G      L +    HDG
Sbjct: 570 DLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDLGIEAAEKLFKLIPQHDG 629

Query: 344 RYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQE 403
            Y+LLSN+Y    +  +    RK MR R +K+ P CS  E++  VH FL  D  H +   
Sbjct: 630 TYVLLSNMYASLGRWNDVARTRKLMRDRGVKKEPACSWTEVENKVHVFLVDDTVHPEVLS 689

Query: 404 IYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIR 463
           IY + E++  ++K  GY  +T+ V+ D+E E KE  +  HSEKLA+AFGL+    G+ +R
Sbjct: 690 IYNYLEKLNLEMKKIGYIPDTKYVLHDMESEHKEYALSTHSEKLAVAFGLMKLPQGATVR 749

Query: 464 IVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           + KN+RIC DCH+A+K +SKV  R+I +RD K +HHF++G CSC  YW
Sbjct: 750 VFKNLRICGDCHNAIKFMSKVVGREIVVRDGKRFHHFKNGECSCRNYW 797



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 141/294 (47%), Gaps = 37/294 (12%)

Query: 63  KLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKE 122
           KLFD+MP+RN+  W +++ G VR G +  A  + + M ++  ++W  +ISG+  +G  ++
Sbjct: 213 KLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFED 272

Query: 123 ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA--- 179
           AL LFR+M+ L ++ + +   S++SACA  G    G  V++YI K  +  D     +   
Sbjct: 273 ALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGN 332

Query: 180 -LIDMYAKCGSIDLAMQVFHSYGDKDV-------SAYTSA-------------------- 211
            LI +Y K G +D A ++F+    KD+       S Y +A                    
Sbjct: 333 TLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLT 392

Query: 212 ----IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMF 267
               I GLA NG   +A +LF  MK  G  P+  ++   ++ACS LG +E G    H+  
Sbjct: 393 WTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENG-RQLHAQI 451

Query: 268 DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
              G    L     M+ +  R G++E A     +MP   D V W +++ A   H
Sbjct: 452 VHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPFV-DPVSWNSMIAALGQH 504



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 70/317 (22%), Positives = 136/317 (42%), Gaps = 49/317 (15%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMP--KRS 103
           N +I+ Y ++ + +   KLFD++PQ + ++  +++      G++  A  +FN+ P   R 
Sbjct: 52  NRLIDIYWKSSDFVYARKLFDEIPQPDVIARTTLITAYSALGNLKMAREIFNETPLDMRD 111

Query: 104 LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA----------CAQL- 152
            V +  +I+G++       A+ LFR M+  + +P+     S+LSA          C Q+ 
Sbjct: 112 TVFYNAMITGYSHMNDGHSAIELFRAMRWANFQPDDFTFASVLSASTLIFYDERQCGQMH 171

Query: 153 -GALDYGNWVYSYIQK-------KCI----------------------KLDSILCAALID 182
              + +G  ++  +         KC                       K +  +   LI 
Sbjct: 172 GTVVKFGIEIFPAVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLIT 231

Query: 183 MYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSIS 242
            Y + G +  A ++  +  ++   A+ + I G   +G   +A  LF  M+  G+  D  +
Sbjct: 232 GYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDEST 291

Query: 243 YIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA----CMVDLLGRAGLLEEAENF 298
           Y +V+SAC+  G+   G    H+    + + P+ D        ++ L  + G ++ A   
Sbjct: 292 YTSVISACADGGFFLLG-KQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKI 350

Query: 299 IASMPMKPDNVIWGTLL 315
              MP+K D + W TLL
Sbjct: 351 FYEMPVK-DIITWNTLL 366



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 88/187 (47%), Gaps = 17/187 (9%)

Query: 13  VKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM---- 68
           V N++I  Y+ CG V  AR +F     +D VSWNSMI    ++G  ++ ++L+++M    
Sbjct: 462 VGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEG 521

Query: 69  --PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLISGFAQNGRPK 121
             P R   ++ ++L      G V++  R FN M +   ++     +  +I  F + G+  
Sbjct: 522 ILPDRR--TFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYARMIDLFCRAGKFS 579

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
           +A  +   + S+  E  + I  +LL+ C   G +D G      + K   + D      L 
Sbjct: 580 DAKNV---IDSMPFEARAPIWEALLAGCRTHGNMDLGIEAAEKLFKLIPQHDGTY-VLLS 635

Query: 182 DMYAKCG 188
           +MYA  G
Sbjct: 636 NMYASLG 642


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/555 (38%), Positives = 318/555 (57%), Gaps = 51/555 (9%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDES--DDLDVVSWNSMINGYVRNGEIL 59
           + K    ++ FV+  LI  Y     V +AR VF+E+       V +N++++GYV N +  
Sbjct: 75  ITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCS 134

Query: 60  EGLKLFDKMPQRNDVSWNSI-LGGLV---------------------------------- 84
           E + LF +M +   V  NS+ L GL+                                  
Sbjct: 135 EAVLLFRQMNEEG-VPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCF 193

Query: 85  -----RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS 139
                + GSV+ A ++F++MP + L+SW  ++SG+AQNG     L L+R M    + P+ 
Sbjct: 194 ITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDP 253

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
             LV +LS+CA LGA   G+ V   IQ      +  L  ALI+MYA+CG++  A  VF  
Sbjct: 254 VTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDG 313

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
             ++ + ++T+ I G  M+GH   A +LF+ M   GI PD  +++ VLSACSH G  ++G
Sbjct: 314 MPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQG 373

Query: 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACR 319
             YF  M   + ++P  +HY+CMVDLLGRAG L+EA+  I SMP+KPD  +WG LLGAC+
Sbjct: 374 LEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACK 433

Query: 320 VHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGC 379
           +H+N E+ +     +IE +  + G Y+LLSNIY      +    +R  M+++K+K+ PGC
Sbjct: 434 IHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGC 493

Query: 380 SLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKI-KNYGYNVETRSVMFDIEEEEKE- 437
           S +EL G VH F+ GDR+H ++ EIY+  EE+   I + +G     +    + EE  K+ 
Sbjct: 494 SYVELKGRVHPFIVGDRNHLQSDEIYRVLEELEAIIMQEFG-----KPEKDNREESNKDG 548

Query: 438 -TVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKH 496
            T +G HSEKLA+AFGL+ T  G+ + I+KN+RIC DCH   K+VSK+  R++++RD   
Sbjct: 549 FTRVGVHSEKLAVAFGLLNTTTGAEVVIIKNLRICEDCHLFFKMVSKIVHRQLTVRDATR 608

Query: 497 YHHFEDGSCSCLEYW 511
           +HHF +GSCSC +YW
Sbjct: 609 FHHFRNGSCSCKDYW 623



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 83/203 (40%), Gaps = 3/203 (1%)

Query: 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSY 164
             W   +   A+  +  +AL+L+ +M      PN+      L +CA L     G+  +  
Sbjct: 15  TPWNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQ 74

Query: 165 IQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS--YGDKDVSAYTSAIFGLAMNGHSI 222
           I K     +  +   LI MY K   +D A +VF    +  K    Y + + G   N    
Sbjct: 75  ITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCS 134

Query: 223 EAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACM 282
           EA  LF  M  +G+  +S++ + ++ AC     +E G    H     +G   ++    C 
Sbjct: 135 EAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELG-SSLHCSTLKYGFDSDVSVVNCF 193

Query: 283 VDLLGRAGLLEEAENFIASMPMK 305
           + +  + G +  A+     MP+K
Sbjct: 194 ITMYMKCGSVNYAQKLFDEMPVK 216


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 184/466 (39%), Positives = 283/466 (60%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N+++  Y + G I    ++FD M  ++ VSWN+IL G V    +D A  VF +MP ++ +
Sbjct: 337 NALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNEL 396

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           SW+V++SG+   G  ++AL LF  M++ D++P        +SAC +LG+L +G  ++ ++
Sbjct: 397 SWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHL 456

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
            +   +  +    ALI MYA+CG++  A  +F    + D  ++ + I  L  +GH  EA 
Sbjct: 457 VQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVSWNAMISALGQHGHGREAL 516

Query: 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL 285
           ELF+ M ++GI PD IS++ VL+AC+H G V++GF YF SM    GI P  DHY  ++DL
Sbjct: 517 ELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFQYFESMKRDFGIIPGEDHYTRLIDL 576

Query: 286 LGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRY 345
           LGRAG + EA + I +MP +P   IW  +L  CR   + E+G    + L +    HDG Y
Sbjct: 577 LGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTY 636

Query: 346 ILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIY 405
           ILLSN Y    +  +A  VRK MR R +K+ PGCS IE    VH F+ GD  H +  ++Y
Sbjct: 637 ILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFVVGDTKHPEAHKVY 696

Query: 406 QFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIV 465
           +F E +  +++  GY  +T+ V+ D+E  +KE ++  HSE+LA+ FGL+   PG+ + ++
Sbjct: 697 KFLEMVGARMRKLGYVPDTKVVLHDMEPHQKEHILFAHSERLAVGFGLLKLPPGATVTVL 756

Query: 466 KNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           KN+RIC DCH+ M  +SK   R+I +RD + +HHF+DG CSC  YW
Sbjct: 757 KNLRICDDCHAVMMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 802



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 149/358 (41%), Gaps = 71/358 (19%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRV---RDARWVFDESDDLDVVSWNSMINGYVRNGEI 58
           V+K+     + V N+L+  Y  C  +   RDAR V DE  D D ++W +M+ GYVR G++
Sbjct: 185 VLKSGAGGVLSVSNALVALYMKCEALEATRDARKVLDEMPDKDALTWTTMVVGYVRRGDV 244

Query: 59  LEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNG 118
                +F+++  + DV WN+++ G V  G V                             
Sbjct: 245 GAARSVFEEVDVKFDVVWNAMISGYVHSGMV----------------------------- 275

Query: 119 RPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI---QKKCIKLDSI 175
              EA  LFR M    +  +     S+LSACA  G   +G  V+  I   Q   +   ++
Sbjct: 276 --VEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFVPEAAL 333

Query: 176 -LCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS------------------------ 210
            +  AL+ +Y+KCG+I +A ++F +   KDV ++ +                        
Sbjct: 334 PVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYK 393

Query: 211 -------AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
                   + G    G S +A +LF  M+++ + P   +Y   +SAC  LG ++ G    
Sbjct: 394 NELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHG-KQL 452

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           H      G +        ++ +  R G ++EA      MP   D+V W  ++ A   H
Sbjct: 453 HGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMP-NIDSVSWNAMISALGQH 509



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 129/323 (39%), Gaps = 40/323 (12%)

Query: 17  LIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ--RNDV 74
           LI  Y++ G +  A  +F    D   V+  S++  Y   G +   +  FD +PQ  R+ V
Sbjct: 65  LIHLYTLSGDLPAAATLFRA--DPCPVAATSLVAAYAAAGRLPAAVSFFDAVPQARRDTV 122

Query: 75  SWNSILGGLVRFGSVDDACRVFNQMPKRSLV-----SWVVLISGFAQNGRPKEALALFRE 129
             N+++    R      A  VF  +     +     S+  L+S  A    P  ++    +
Sbjct: 123 LHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLS--AAGHLPNISVRHCAQ 180

Query: 130 MQSLDLEPN-------SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182
           +Q   L+         S  LV+L   C  L A      V   +  K    D++    ++ 
Sbjct: 181 LQCSVLKSGAGGVLSVSNALVALYMKCEALEATRDARKVLDEMPDK----DALTWTTMVV 236

Query: 183 MYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSIS 242
            Y + G +  A  VF     K    + + I G   +G  +EAFELF  M  + +  D  +
Sbjct: 237 GYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFT 296

Query: 243 YIAVLSACSHLGWVEKGFYYFHSMFDVHG----IKPELDHYA------CMVDLLGRAGLL 292
           + +VLSAC++ G+   G         VHG    ++P     A       +V L  + G +
Sbjct: 297 FTSVLSACANAGFFAHG-------KSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNI 349

Query: 293 EEAENFIASMPMKPDNVIWGTLL 315
             A     +M  K D V W T+L
Sbjct: 350 AVARRIFDNMKSK-DVVSWNTIL 371


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/558 (36%), Positives = 326/558 (58%), Gaps = 56/558 (10%)

Query: 10  DVFVKNSLIQFYSV---CGRVRDA------------RWVFDESDDLDVVSWNSMINGYVR 54
           D+++ N+LI  Y+     G+V D             + VFD     DVVSWN++I G+ +
Sbjct: 144 DLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNTVIAGFAQ 203

Query: 55  NGEILEGLKLFDKMPQRNDVSWNS---------------------ILGGLVRFGSVDD-- 91
           NG  +E L +  +M +   +  +S                     I G  VR G   D  
Sbjct: 204 NGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVRNGFDGDVF 263

Query: 92  -----------------ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD 134
                            + R F  +P++  +SW  +I+G  QNG     L  FR M   +
Sbjct: 264 IGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFFRRMLKEN 323

Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
           ++P +    S++ ACA L AL  G  ++  I +     +  + ++L+DMYAKCG+I +A 
Sbjct: 324 VKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIASSLVDMYAKCGNIKMAR 383

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
            VF     +D+ A+T+ I G AM+GH+++A  LFENM   G+ P  ++++AVL+ACSH G
Sbjct: 384 YVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCYVAFMAVLTACSHAG 443

Query: 255 WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKPDNVIWGT 313
            V++G+ YF+SM    GI P L+HYA + DLLGRAG LEEA +FI++M  ++P   +W  
Sbjct: 444 LVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGRAGRLEEAYDFISNMRGVQPTGSVWSI 503

Query: 314 LLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKI 373
           LL ACR H++ E+ +++ + L+  D  + G Y+L+SNIY    + ++A  +R  MRK+ +
Sbjct: 504 LLAACRAHKSVELAEKVLDKLLSVDSENMGAYVLMSNIYSAAQRWKDAARLRIHMRKKGL 563

Query: 374 KRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEE 433
           K+ P CS IE+   VH F+AGD+SH    +I +  + ++++++  GY ++T  V+ D++E
Sbjct: 564 KKTPACSWIEVGNQVHTFMAGDKSHPYYDKINKALDVLLEQMEKEGYVIDTNQVLHDVDE 623

Query: 434 EEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRD 493
           E K  ++  HSE+LA+A+G+I T  G+ IR++KNIR+C+DCH+A+K ++K+  R+I++RD
Sbjct: 624 ELKRELLHNHSERLAIAYGIISTTAGTTIRVIKNIRVCADCHTAIKFITKIVGREITVRD 683

Query: 494 RKHYHHFEDGSCSCLEYW 511
              +HHF++GSCSC +YW
Sbjct: 684 NSRFHHFKNGSCSCGDYW 701



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 139/287 (48%), Gaps = 19/287 (6%)

Query: 39  DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQ 98
           D D+   N++IN Y +        K+FD  P+R +               +D   +VF+ 
Sbjct: 142 DSDLYIANALINTYAK---FHNAGKVFDVFPKRGE-------------SGIDCVKKVFDM 185

Query: 99  MPKRSLVSWVVLISGFAQNGRPKEALALFREM-QSLDLEPNSAILVSLLSACAQLGALDY 157
           MP R +VSW  +I+GFAQNG   EAL + REM ++  L+P+S  L S+L   A+   ++ 
Sbjct: 186 MPVRDVVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNK 245

Query: 158 GNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAM 217
           G  ++ Y  +     D  + ++LIDMYAKC  ++ +++ F+    KD  ++ S I G   
Sbjct: 246 GKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQ 305

Query: 218 NGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELD 277
           NG        F  M  + + P ++S+ +V+ AC+HL  +  G    H      G      
Sbjct: 306 NGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLG-RQLHGCIVRLGFDDNEF 364

Query: 278 HYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
             + +VD+  + G ++ A  ++     K D V W  ++  C +H +A
Sbjct: 365 IASSLVDMYAKCGNIKMAR-YVFDRIDKRDMVAWTAIIMGCAMHGHA 410



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 126/279 (45%), Gaps = 44/279 (15%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           V+N F  DVF+ +SLI  Y+ C R+  +   F      D +SWNS+I G V+NGE   GL
Sbjct: 254 VRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGL 313

Query: 63  KLFDKMPQRN----DVSWNSIL----------------GGLVRFGSVDD----------- 91
             F +M + N     VS++S++                G +VR G  D+           
Sbjct: 314 GFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIASSLVDMY 373

Query: 92  --------ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
                   A  VF+++ KR +V+W  +I G A +G   +A++LF  M    + P     +
Sbjct: 374 AKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCYVAFM 433

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSIL--CAALIDMYAKCGSIDLAMQVFHSYG 201
           ++L+AC+  G +D G W Y    ++   +   L   AA+ D+  + G ++ A     +  
Sbjct: 434 AVLTACSHAGLVDEG-WRYFNSMERDFGIAPGLEHYAAVADLLGRAGRLEEAYDFISNMR 492

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
               +    +I   A   H  ++ EL E +  K +S DS
Sbjct: 493 GVQPTGSVWSILLAACRAH--KSVELAEKVLDKLLSVDS 529



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 79/157 (50%), Gaps = 11/157 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +V+  F  + F+ +SL+  Y+ CG ++ AR+VFD  D  D+V+W ++I G   +G  L+ 
Sbjct: 354 IVRLGFDDNEFIASSLVDMYAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDA 413

Query: 62  LKLFDKMPQRND----VSWNSILGGLVRFGSVDDACRVFNQMPK-----RSLVSWVVLIS 112
           + LF+ M +       V++ ++L      G VD+  R FN M +       L  +  +  
Sbjct: 414 VSLFENMLEDGVRPCYVAFMAVLTACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVAD 473

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
              + GR +EA      M+   ++P  ++   LL+AC
Sbjct: 474 LLGRAGRLEEAYDFISNMRG--VQPTGSVWSILLAAC 508



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 102/242 (42%), Gaps = 20/242 (8%)

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           +W  +I  +  +     + + F  M+SL + PN  +  SLL A   L      + +++  
Sbjct: 77  AWSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACT 136

Query: 166 QKKCIKLDSILCAALIDMYAKC---------------GSIDLAMQVFHSYGDKDVSAYTS 210
            +  +  D  +  ALI+ YAK                  ID   +VF     +DV ++ +
Sbjct: 137 VRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNT 196

Query: 211 AIFGLAMNGHSIEAFELFENMKSKG-ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDV 269
            I G A NG  +EA ++   M   G + PDS +  ++L   +    V KG    H     
Sbjct: 197 VIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKG-KEIHGYAVR 255

Query: 270 HGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQR 329
           +G   ++   + ++D+  +   LE +      +P K D + W +++  C   +N E  + 
Sbjct: 256 NGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRK-DAISWNSIIAGCV--QNGEFDRG 312

Query: 330 IG 331
           +G
Sbjct: 313 LG 314


>gi|147860852|emb|CAN83162.1| hypothetical protein VITISV_022557 [Vitis vinifera]
          Length = 562

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/451 (43%), Positives = 297/451 (65%), Gaps = 5/451 (1%)

Query: 63  KLFDKMPQ--RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
           +L D+MP    + ++ N I+  L++ G  D A RVF +M +R +V+W  +I G  +N R 
Sbjct: 115 QLLDEMPYWGFDLITANLIIASLMKVGEFDFAKRVFRKMLRRDVVTWNSMIGGCVRNERF 174

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
           +EAL  FREM + ++EP+     S+++ CA+LG+  +   V+  + +K I+L+ IL +AL
Sbjct: 175 EEALRFFREMLNSNVEPDGFTFASVINGCARLGSSHHAELVHGLMIEKKIQLNFILSSAL 234

Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           ID+Y+KCG I+ A +VF+S    DVS + S I GLA++G +++A  +F  M+ + +SPDS
Sbjct: 235 IDLYSKCGRINTAKKVFNSIQHDDVSVWNSMINGLAIHGLALDAIGVFSQMEMESVSPDS 294

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
           I++I +L+ACSH G VE+G  YF  M   + I+P+L+HY  MVDLLGRAGL+EEA   I 
Sbjct: 295 ITFIGILTACSHCGLVEQGRRYFDLMRRHYSIQPQLEHYGAMVDLLGRAGLVEEAYAMIK 354

Query: 301 SMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGEN 360
           +MPM+PD VIW  LL ACR  +N E+G+     + +    + G YILLSN+Y    K ++
Sbjct: 355 AMPMEPDIVIWRALLSACRNFKNPELGE---VAIAKISHLNSGDYILLSNMYCSLEKWDS 411

Query: 361 AEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGY 420
           AE VR+ M++  +++  G S +EL GV+H+F AGDRSH +T  IY+  E ++++ K  G+
Sbjct: 412 AERVREMMKRDGVRKNRGRSWVELGGVIHQFKAGDRSHPETGAIYKVLEGLIRRTKLEGF 471

Query: 421 NVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKL 480
              T  V+ D+ +EE+E  +  HSEKLALA+ ++ T PG+ IR+ KN+R C DCH  MK+
Sbjct: 472 MPATDLVLMDVSDEEREENLNSHSEKLALAYVILKTSPGTEIRVSKNLRTCHDCHCWMKI 531

Query: 481 VSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           +S++  R I +RDR  +H FE G CSC +YW
Sbjct: 532 LSRLLSRVIIVRDRIRFHQFEGGLCSCRDYW 562



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 63/293 (21%), Positives = 116/293 (39%), Gaps = 74/293 (25%)

Query: 7   FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFD 66
           + +D+   N +I      G    A+ VF +    DVV+WNSMI G VRN    E L+ F 
Sbjct: 123 WGFDLITANLIIASLMKVGEFDFAKRVFRKMLRRDVVTWNSMIGGCVRNERFEEALRFFR 182

Query: 67  KMPQRN----DVSWNSILGGLVRFGS---------------------------------- 88
           +M   N      ++ S++ G  R GS                                  
Sbjct: 183 EMLNSNVEPDGFTFASVINGCARLGSSHHAELVHGLMIEKKIQLNFILSSALIDLYSKCG 242

Query: 89  -VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLS 147
            ++ A +VFN +    +  W  +I+G A +G   +A+ +F +M+   + P+S   + +L+
Sbjct: 243 RINTAKKVFNSIQHDDVSVWNSMINGLAIHGLALDAIGVFSQMEMESVSPDSITFIGILT 302

Query: 148 ACAQLGALDYGNWVYSYIQKK-CIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
           AC+  G ++ G   +  +++   I+       A++D+  + G ++               
Sbjct: 303 ACSHCGLVEQGRRYFDLMRRHYSIQPQLEHYGAMVDLLGRAGLVE--------------- 347

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
                              E +  +K+  + PD + + A+LSAC +    E G
Sbjct: 348 -------------------EAYAMIKAMPMEPDIVIWRALLSACRNFKNPELG 381



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 12/167 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++++     +  + ++LI  YS CGR+  A+ VF+     DV  WNSMING   +G  L+
Sbjct: 218 LMIEKKIQLNFILSSALIDLYSKCGRINTAKKVFNSIQHDDVSVWNSMINGLAIHGLALD 277

Query: 61  GLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLI 111
            + +F +M       + +++  IL      G V+   R F+ M +       L  +  ++
Sbjct: 278 AIGVFSQMEMESVSPDSITFIGILTACSHCGLVEQGRRYFDLMRRHYSIQPQLEHYGAMV 337

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
               + G  +EA A+ + M    +EP+  I  +LLSAC      + G
Sbjct: 338 DLLGRAGLVEEAYAMIKAMP---MEPDIVIWRALLSACRNFKNPELG 381


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 182/466 (39%), Positives = 301/466 (64%), Gaps = 18/466 (3%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N++++ Y + G++ E L+ F+++P ++  SWNS+L G  R G VD A   FN++P++ +V
Sbjct: 407 NALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIV 466

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           SW  +++ + ++    E+  +F +MQS +++P+   L+SLLS+CA++GAL++G WV  YI
Sbjct: 467 SWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYI 526

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
           +K  I +D++L  ALIDMY KCG +++A ++F    +K+V  +T+ +   AM G ++EA 
Sbjct: 527 EKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAI 586

Query: 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL 285
           +L+  M+ +G+ PD +++IA+L+ACSH G V++G+ YF+ +   + I P + HY CMVDL
Sbjct: 587 DLYLEMEERGVKPDHVTFIALLAACSHGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVDL 646

Query: 286 LGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRY 345
           LGR G LEE   FI  MP++PD  IW +L+ ACR H N E+ ++    LIE D  ++G +
Sbjct: 647 LGRVGHLEETVKFIERMPIEPDVSIWSSLMRACRSHHNVELAEQAFKQLIEIDPTNNGAH 706

Query: 346 ILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIY 405
           +LLSNIY +  + ++  +VR  + +  + + PG ++IE +GVVHEF+A   S+  + +I 
Sbjct: 707 VLLSNIYADAGRWDDVSKVRTKLHETGVPKQPGFTMIEQNGVVHEFVA---SNLVSADIL 763

Query: 406 QFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIV 465
              ++I +++               + ++E       HSE+LA+AFGLI  +  S IR+V
Sbjct: 764 CMLQDIERRL---------------LVKQELSDTTSQHSERLAVAFGLINNQENSPIRVV 808

Query: 466 KNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            ++R+C DCHS MKL+S+ + R+I IRD   +H F DG CSC +YW
Sbjct: 809 NSVRMCRDCHSVMKLISQAYDREIVIRDNYRFHRFTDGHCSCKDYW 854



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 162/340 (47%), Gaps = 74/340 (21%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDD--LDVVSWNSMINGYVRNGEILEGLKLFDKMPQRN 72
           N L+  YS CG++ +A  +    D+  +DVV W ++++GY                    
Sbjct: 273 NCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGY-------------------- 312

Query: 73  DVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQS 132
                      V+   +D A ++F++M +RSLVSW  ++SG+ Q G   E+L LF++M+ 
Sbjct: 313 -----------VKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRF 361

Query: 133 LDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDL 192
            ++ P+   LV++LSAC  L   D G  V+++I    + +D  L  AL+D+YAKCG +D 
Sbjct: 362 ENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDE 421

Query: 193 AMQVFHSYGDKDVSAYTSAIFGLAMNG-----------------------------HSI- 222
           A++ F     K  +++ S + G   +G                             H + 
Sbjct: 422 ALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLF 481

Query: 223 -EAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA- 280
            E+FE+F  M+S  + PD  + I++LS+C+ +G +  G +      +V+  K E+   A 
Sbjct: 482 NESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIW-----VNVYIEKNEIGIDAM 536

Query: 281 ---CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
               ++D+ G+ G +E A      + ++ +  +W  ++ A
Sbjct: 537 LGTALIDMYGKCGCVEMAYEIFTQI-IEKNVFVWTAMMAA 575



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 153/318 (48%), Gaps = 40/318 (12%)

Query: 40  LDVVSWNSMINGYVRNGEILEGLKLFDKMPQ----RNDVSWNSILGGLVRFGSVDDACRV 95
           LD+ +++ +I+   +N ++  G ++  ++ +    RN    N+++G   + G + + C++
Sbjct: 131 LDISTFHFLIHACCKNFDVKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQL 190

Query: 96  FNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGAL 155
           F +M  R ++SW  +IS +   G  +EAL LF EM    + P+   +VSL+S CA+L  L
Sbjct: 191 FEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDL 250

Query: 156 DYGNWVYSYIQKKCIKLDSILCAALIDMYAKCG--------------------------- 188
           + G  ++ YI    + +   L   L+DMY+KCG                           
Sbjct: 251 EMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVS 310

Query: 189 ------SIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSIS 242
                  ID A Q+F    ++ + ++T+ + G    G+  E+ ELF+ M+ + + PD ++
Sbjct: 311 GYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVA 370

Query: 243 YIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM 302
            + VLSAC HL   + G    H+    +G+  +      ++DL  + G L+EA      +
Sbjct: 371 LVTVLSACVHLEDFDLG-RSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQL 429

Query: 303 PMKPDNVIWGTLL-GACR 319
           P K     W ++L G CR
Sbjct: 430 PCK-SAASWNSMLDGFCR 446



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 113/246 (45%), Gaps = 10/246 (4%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136
           + +L  L+   ++D A ++ +   +   + W  L+    + G P+E L  +  M +  + 
Sbjct: 71  SQVLAFLLSVNNLDCAHQILSYSHEPESIIWNTLLENKLKEGCPQEVLECYYHMVTQGVL 130

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
            + +    L+ AC +   +  G+ V+  I K     +  L   L+ +Y+KCG +    Q+
Sbjct: 131 LDISTFHFLIHACCKNFDVKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQL 190

Query: 197 FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWV 256
           F     +DV ++ + I    + G   EA +LF+ M   G+ PD I+ ++++S C+ L  +
Sbjct: 191 FEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDL 250

Query: 257 EKG----FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKPDNVIW 311
           E G     Y   +   + G         C+VD+  + G ++EA   ++     + D V+W
Sbjct: 251 EMGKRLHLYIVDNKLWIRG-----SLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLW 305

Query: 312 GTLLGA 317
            TL+  
Sbjct: 306 TTLVSG 311


>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
          Length = 681

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 209/541 (38%), Positives = 308/541 (56%), Gaps = 40/541 (7%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DVFV +SL+  Y+  G + DA  VFD     D V+W++M+ G+V  G+ L+ ++++ +M 
Sbjct: 142 DVFVCSSLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMR 201

Query: 70  Q--------------------RNDVSWNSILGGLVRFGS-------------------VD 90
           +                    RN     S+ G L+R G                    +D
Sbjct: 202 EDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLD 261

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
            ACRVF  M  R+ VSW  +ISGFAQNG+  EAL LFR MQ+  ++P+S  LVS L AC+
Sbjct: 262 VACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACS 321

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
            +G L  G  V+ +I ++    + IL  A IDMY+KCGS+  A  +F+   D+D+  + +
Sbjct: 322 NIGFLKLGRSVHGFIVRR-FDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNA 380

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I     +G   +A  LF+ M   G+ PD  ++ ++LSA SH G VE+G  +F  M +  
Sbjct: 381 MIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGCMVNHF 440

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
            I P   HY C+VDLL R+GL+EEA + + SM  +P   IW  LL  C  ++  E+G+ I
Sbjct: 441 KITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESI 500

Query: 331 GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHE 390
            + ++E   +  G   L+SN+Y  T K +   +VRK M+    K+ PGCS IE+ G  H 
Sbjct: 501 ADNILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHA 560

Query: 391 FLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALA 450
           FL  D+SH + +EI     ++  +++  GY   T  V  D+EEE KE  + YHSEKLA+A
Sbjct: 561 FLMEDQSHPQREEIVSKVAKLDLEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSEKLAIA 620

Query: 451 FGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEY 510
           FGL+ T PG+ + I+KN+R+C DCH A+K +SK+  R+I +RD K +HHF+DG CSC +Y
Sbjct: 621 FGLLNTGPGTRLVIIKNLRVCGDCHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDY 680

Query: 511 W 511
           W
Sbjct: 681 W 681



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 152/276 (55%), Gaps = 14/276 (5%)

Query: 51  GYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVL 110
           G +R GE +   + FD   + +    +S+L    R+G++ DA +VF++MP+R  V+W  +
Sbjct: 122 GDLRGGESVRD-RAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTM 180

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCI 170
           ++GF   G+P +A+ ++R M+   ++ +  +++ ++ AC     +  G  V+ ++ +  +
Sbjct: 181 VAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGM 240

Query: 171 KLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFEN 230
           ++D +   +L+DMYAK G +D+A +VF     ++  ++++ I G A NG S EA  LF N
Sbjct: 241 RMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRN 300

Query: 231 MKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACM-----VDL 285
           M++ GI PDS + ++ L ACS++G+++ G         VHG       + C+     +D+
Sbjct: 301 MQASGIQPDSGALVSALLACSNIGFLKLG-------RSVHGFIVRRFDFNCILGTAAIDM 353

Query: 286 LGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
             + G L  A+  + +M    D ++W  ++  C  H
Sbjct: 354 YSKCGSLASAQ-MLFNMISDRDLILWNAMIACCGAH 388



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 96/201 (47%), Gaps = 3/201 (1%)

Query: 115 AQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDS 174
           ++ G P  AL +FR +      P+S      LSACA+LG L  G  V         K D 
Sbjct: 85  SRRGSPASALRVFRALPPA-ARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDV 143

Query: 175 ILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK 234
            +C++L+ +YA+ G++  A++VF     +D   +++ + G    G  ++A +++  M+  
Sbjct: 144 FVCSSLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMRED 203

Query: 235 GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEE 294
           G+  D +  I V+ AC+    V  G    H     HG++ ++     +VD+  + GLL+ 
Sbjct: 204 GVKGDEVVMIGVIQACTAARNVRMG-ASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDV 262

Query: 295 AENFIASMPMKPDNVIWGTLL 315
           A      M  + D V W  ++
Sbjct: 263 ACRVFGLMVHRND-VSWSAMI 282



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 123/287 (42%), Gaps = 42/287 (14%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++++    DV    SL+  Y+  G +  A  VF      + VSW++MI+G+ +NG+  E 
Sbjct: 235 LLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEA 294

Query: 62  LKLFDKM------PQRNDV---------------------------SWNSILGGLV---- 84
           L+LF  M      P    +                            +N ILG       
Sbjct: 295 LRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDFNCILGTAAIDMY 354

Query: 85  -RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
            + GS+  A  +FN +  R L+ W  +I+    +GR ++AL LF+EM    + P+ A   
Sbjct: 355 SKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFA 414

Query: 144 SLLSACAQLGALDYGN-WVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           SLLSA +  G ++ G  W    +    I         L+D+ A+ G ++ A  +  S   
Sbjct: 415 SLLSALSHSGLVEEGKLWFGCMVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKA 474

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFE-LFENMKSKGISPDSISYIAVLS 248
           +   A   A+    +N   +E  E + +N+    + PD +  +A++S
Sbjct: 475 EPTVAIWVALLSGCLNNKKLELGESIADNILE--LQPDDVGVLALVS 519


>gi|356573508|ref|XP_003554900.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Glycine max]
          Length = 629

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/479 (41%), Positives = 302/479 (63%), Gaps = 14/479 (2%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N +++GYV+ G + E  ++F+++ + + VSW  +L G+V+   V+    VF++MP+R+ V
Sbjct: 152 NGVMDGYVKCGLVGEARRVFEEIEEPSVVSWTVVLEGVVKCEGVESGKVVFDEMPERNEV 211

Query: 106 SWVVLISGFAQNGRPKEALALFREMQ---SLDLEPNSAILVSLLSACAQLGALDYGNWVY 162
           +W VLI G+  +G  KEA  L +EM          NS  L S+LSAC+Q G +  G WV+
Sbjct: 212 AWTVLIKGYVGSGFTKEAFLLLKEMVFGCGFGFGLNSITLCSVLSACSQSGDVSVGRWVH 271

Query: 163 SYIQKKC-IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHS 221
            Y  K     L  ++  +L+DMYAKCG I  A+ VF     ++V A+ + + GLAM+G  
Sbjct: 272 CYAVKAVGWDLGVMVGTSLVDMYAKCGRISAALMVFRHMPRRNVVAWNAMLCGLAMHGMG 331

Query: 222 IEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYAC 281
               E+F  M  + + PD+++++A+LS+CSH G VE+G+ YFH +   +GI+PE++HYAC
Sbjct: 332 KVVVEMFACMVEE-VKPDAVTFMALLSSCSHSGLVEQGWQYFHDLERAYGIRPEIEHYAC 390

Query: 282 MVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH 341
           MVDLLGRAG LEEAE+ +  +P+ P+ V+ G+LLGAC  H    +G++I   L++ D  +
Sbjct: 391 MVDLLGRAGRLEEAEDLVKKLPIPPNEVVLGSLLGACYAHGKLRLGEKIMRELVQMDPLN 450

Query: 342 DGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKT 401
              +ILLSN+Y    K + A  +RK ++ R I++ PG S I +DG +H F+AGD+SH +T
Sbjct: 451 TEYHILLSNMYALCGKADKANSLRKVLKNRGIRKVPGMSSIYVDGQLHRFIAGDKSHPRT 510

Query: 402 QEIYQFWEEIVKKIKNYGYNVETR-SVMFDIEE--------EEKETVIGYHSEKLALAFG 452
            +IY   ++++ K++  GY   T   V+F            EE E V+  HSEKLAL FG
Sbjct: 511 ADIYMKLDDMICKLRLAGYVPNTNCQVLFGCSNGDDCMEAFEEVEQVLFTHSEKLALCFG 570

Query: 453 LICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           L+ T   S + I KN+RIC DCHSA+K+ S ++KR+I +RDR  +H F+ GSCSC +YW
Sbjct: 571 LMSTPSSSPLCIFKNLRICQDCHSAIKIASDIYKREIVVRDRYRFHSFKQGSCSCSDYW 629



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 99/214 (46%), Gaps = 21/214 (9%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ 70
           V V  SL+  Y+ CGR+  A  VF      +VV+WN+M+ G   +G     +++F  M +
Sbjct: 284 VMVGTSLVDMYAKCGRISAALMVFRHMPRRNVVAWNAMLCGLAMHGMGKVVVEMFACMVE 343

Query: 71  R---NDVSWNSILGGLVRFGSVDDACRVFNQMP-----KRSLVSWVVLISGFAQNGRPKE 122
               + V++ ++L      G V+   + F+ +      +  +  +  ++    + GR +E
Sbjct: 344 EVKPDAVTFMALLSSCSHSGLVEQGWQYFHDLERAYGIRPEIEHYACMVDLLGRAGRLEE 403

Query: 123 ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCA---A 179
           A  L ++   L + PN  +L SLL AC   G L  G      I ++ +++D +       
Sbjct: 404 AEDLVKK---LPIPPNEVVLGSLLGACYAHGKLRLGE----KIMRELVQMDPLNTEYHIL 456

Query: 180 LIDMYAKCGSIDLA---MQVFHSYGDKDVSAYTS 210
           L +MYA CG  D A    +V  + G + V   +S
Sbjct: 457 LSNMYALCGKADKANSLRKVLKNRGIRKVPGMSS 490



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 103/264 (39%), Gaps = 41/264 (15%)

Query: 94  RVFNQMPK--RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           ++F+++P   +  V +  LI    +   P +AL  + +M+   L  +   L+  L AC++
Sbjct: 70  KLFDRIPHSHKDSVDYTALI----RCSHPLDALRFYLQMRQRALPLDGVALICALGACSK 125

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV------ 205
           LG  +    ++  + K      + +   ++D Y KCG +  A +VF    +  V      
Sbjct: 126 LGDSNLVPQMHVGVVKFGFLRHTKVLNGVMDGYVKCGLVGEARRVFEEIEEPSVVSWTVV 185

Query: 206 -------------------------SAYTSAIFGLAMNGHSIEAFELFENMK---SKGIS 237
                                     A+T  I G   +G + EAF L + M      G  
Sbjct: 186 LEGVVKCEGVESGKVVFDEMPERNEVAWTVLIKGYVGSGFTKEAFLLLKEMVFGCGFGFG 245

Query: 238 PDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAEN 297
            +SI+  +VLSACS  G V  G +         G    +     +VD+  + G +  A  
Sbjct: 246 LNSITLCSVLSACSQSGDVSVGRWVHCYAVKAVGWDLGVMVGTSLVDMYAKCGRISAALM 305

Query: 298 FIASMPMKPDNVIWGTLLGACRVH 321
               MP + + V W  +L    +H
Sbjct: 306 VFRHMPRR-NVVAWNAMLCGLAMH 328


>gi|218196348|gb|EEC78775.1| hypothetical protein OsI_19008 [Oryza sativa Indica Group]
          Length = 580

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 194/444 (43%), Positives = 278/444 (62%), Gaps = 15/444 (3%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALF-------RE 129
            ++L    + G +  A +VF++M  R + +W  L++G AQ   P  ALALF       +E
Sbjct: 143 TTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGLAQGTEPNLALALFHRLANSFQE 202

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
           + S + EPN   +V+ LSACAQ+G L  G +V+ + ++  +  +  +C +LIDMY+KCGS
Sbjct: 203 LPSRE-EPNEVTIVAALSACAQIGLLKDGMYVHEFAKRFGLDRNVRVCNSLIDMYSKCGS 261

Query: 190 IDLAMQVFHSYG--DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVL 247
           +  A+ VFHS    D+ + +Y +AI   +M+GH  +A  LF+ M ++ I PD ++Y+AVL
Sbjct: 262 LSRALDVFHSIKPEDRTLVSYNAAIQAHSMHGHGGDALRLFDEMPTR-IEPDGVTYLAVL 320

Query: 248 SACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPD 307
             C+H G V+ G   F+SM     + P + HY  +VDLLGRAG L EA + + SMP   D
Sbjct: 321 CGCNHSGLVDDGLRVFNSMR----VAPNMKHYGTIVDLLGRAGRLTEAYDTVISMPFPAD 376

Query: 308 NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKT 367
            V+W TLLGA ++H   E+ +   N L E   N DG Y+LLSN+Y    +  +   VR T
Sbjct: 377 IVLWQTLLGAAKMHGVVELAELAANKLAELGSNVDGDYVLLSNVYASKARWMDVGRVRDT 436

Query: 368 MRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSV 427
           MR   +++ PG S  E+DGV+H+F+ GD+ H + QEIY+  E+IV +I   GY  ET +V
Sbjct: 437 MRSNDVRKVPGFSYTEIDGVMHKFINGDKEHPRWQEIYRALEDIVSRISELGYEPETSNV 496

Query: 428 MFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKR 487
           + DI EEEK+  + YHSEKLA+AFGLI T PG  +R++KN+RIC DCH   KL+SK + R
Sbjct: 497 LHDIGEEEKQYALCYHSEKLAIAFGLIATPPGETLRVIKNLRICGDCHVVAKLISKAYGR 556

Query: 488 KISIRDRKHYHHFEDGSCSCLEYW 511
            I IRDR  +H FEDG CSC +YW
Sbjct: 557 VIVIRDRARFHRFEDGQCSCRDYW 580



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 84/192 (43%), Gaps = 9/192 (4%)

Query: 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ 195
            P++  L   L A A+         +++ + +  +  D  L   L+D YAKCG +  A +
Sbjct: 101 RPDALSLSFALKASARCSDAHTTVQLHALVLRLGVAADVRLLTTLLDSYAKCGDLASARK 160

Query: 196 VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKS------KGISPDSISYIAVLSA 249
           VF     +DV+ + S + GLA       A  LF  + +          P+ ++ +A LSA
Sbjct: 161 VFDEMTVRDVATWNSLLAGLAQGTEPNLALALFHRLANSFQELPSREEPNEVTIVAALSA 220

Query: 250 CSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNV 309
           C+ +G ++ G  Y H      G+   +     ++D+  + G L  A +   S  +KP++ 
Sbjct: 221 CAQIGLLKDGM-YVHEFAKRFGLDRNVRVCNSLIDMYSKCGSLSRALDVFHS--IKPEDR 277

Query: 310 IWGTLLGACRVH 321
              +   A + H
Sbjct: 278 TLVSYNAAIQAH 289


>gi|220061997|gb|ACL79586.1| pentatricopeptide repeat protein [Oryza sativa Japonica Group]
          Length = 587

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 194/444 (43%), Positives = 278/444 (62%), Gaps = 15/444 (3%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALF-------RE 129
            ++L    + G +  A +VF++M  R + +W  L++G AQ   P  ALALF       +E
Sbjct: 150 TTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGLAQGTEPNLALALFHRLANSFQE 209

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
           + S + EPN   +V+ LSACAQ+G L  G +V+ + ++  +  +  +C +LIDMY+KCGS
Sbjct: 210 LPSRE-EPNEVTIVAALSACAQIGLLKDGMYVHEFAKRFGLDRNVRVCNSLIDMYSKCGS 268

Query: 190 IDLAMQVFHSYG--DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVL 247
           +  A+ VFHS    D+ + +Y +AI   +M+GH  +A  LF+ M ++ I PD ++Y+AVL
Sbjct: 269 LSRALDVFHSIKPEDQTLVSYNAAIQAHSMHGHGGDALRLFDEMPTR-IEPDGVTYLAVL 327

Query: 248 SACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPD 307
             C+H G V+ G   F+SM     + P + HY  +VDLLGRAG L EA + + SMP   D
Sbjct: 328 CGCNHSGLVDDGLRVFNSM----RVAPNMKHYGTIVDLLGRAGRLTEAYDTVISMPFPAD 383

Query: 308 NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKT 367
            V+W TLLGA ++H   E+ +   N L E   N DG Y+LLSN+Y    +  +   VR T
Sbjct: 384 IVLWQTLLGAAKMHGVVELAELAANKLAELGSNVDGDYVLLSNVYASKARWMDVGRVRDT 443

Query: 368 MRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSV 427
           MR   +++ PG S  E+DGV+H+F+ GD+ H + QEIY+  E+IV +I   GY  ET +V
Sbjct: 444 MRSNDVRKVPGFSYTEIDGVMHKFINGDKEHPRWQEIYRALEDIVSRISELGYEPETSNV 503

Query: 428 MFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKR 487
           + DI EEEK+  + YHSEKLA+AFGLI T PG  +R++KN+RIC DCH   KL+SK + R
Sbjct: 504 LHDIGEEEKQYALCYHSEKLAIAFGLIATPPGETLRVIKNLRICGDCHVVAKLISKAYGR 563

Query: 488 KISIRDRKHYHHFEDGSCSCLEYW 511
            I IRDR  +H FEDG CSC +YW
Sbjct: 564 VIVIRDRARFHRFEDGQCSCRDYW 587



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 84/192 (43%), Gaps = 9/192 (4%)

Query: 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ 195
            P++  L   L A A+         +++ + +  +  D  L   L+D YAKCG +  A +
Sbjct: 108 RPDALSLSFALKASARCSDAHTTVQLHALVLRLGVAADVRLLTTLLDSYAKCGDLASARK 167

Query: 196 VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKS------KGISPDSISYIAVLSA 249
           VF     +DV+ + S + GLA       A  LF  + +          P+ ++ +A LSA
Sbjct: 168 VFDEMTVRDVATWNSLLAGLAQGTEPNLALALFHRLANSFQELPSREEPNEVTIVAALSA 227

Query: 250 CSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNV 309
           C+ +G ++ G  Y H      G+   +     ++D+  + G L  A +   S  +KP++ 
Sbjct: 228 CAQIGLLKDGM-YVHEFAKRFGLDRNVRVCNSLIDMYSKCGSLSRALDVFHS--IKPEDQ 284

Query: 310 IWGTLLGACRVH 321
              +   A + H
Sbjct: 285 TLVSYNAAIQAH 296


>gi|225456505|ref|XP_002280974.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50990
           [Vitis vinifera]
          Length = 523

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/451 (43%), Positives = 297/451 (65%), Gaps = 5/451 (1%)

Query: 63  KLFDKMPQ--RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
           +L D+MP    + ++ N I+  L++ G  D A RVF +M +R +V+W  +I G  +N R 
Sbjct: 76  QLLDEMPYWGFDLITANLIIASLMKVGEFDFAKRVFRKMLRRDVVTWNSMIGGCVRNERF 135

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
           +EAL  FREM + ++EP+     S+++ CA+LG+  +   V+  + +K I+L+ IL +AL
Sbjct: 136 EEALRFFREMLNSNVEPDGFTFASVINGCARLGSSHHAELVHGLMIEKKIQLNFILSSAL 195

Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           ID+Y+KCG I+ A +VF+S    DVS + S I GLA++G +++A  +F  M+ + +SPDS
Sbjct: 196 IDLYSKCGRINTAKKVFNSIQHDDVSVWNSMINGLAIHGLALDAIGVFSQMEMESVSPDS 255

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
           I++I +L+ACSH G VE+G  YF  M   + I+P+L+HY  MVDLLGRAGL+EEA   I 
Sbjct: 256 ITFIGILTACSHCGLVEQGRRYFDLMRRHYSIQPQLEHYGAMVDLLGRAGLVEEAYAMIK 315

Query: 301 SMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGEN 360
           +MPM+PD VIW  LL ACR  +N E+G+     + +    + G YILLSN+Y    K ++
Sbjct: 316 AMPMEPDIVIWRALLSACRNFKNPELGE---VAIAKISHLNSGDYILLSNMYCSLEKWDS 372

Query: 361 AEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGY 420
           AE VR+ M++  +++  G S +EL GV+H+F AGDRSH +T  IY+  E ++++ K  G+
Sbjct: 373 AERVREMMKRDGVRKNRGRSWVELGGVIHQFKAGDRSHPETGAIYKVLEGLIRRTKLEGF 432

Query: 421 NVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKL 480
              T  V+ D+ +EE+E  +  HSEKLALA+ ++ T PG+ IR+ KN+R C DCH  MK+
Sbjct: 433 MPATDLVLMDVSDEEREENLNSHSEKLALAYVILKTSPGTEIRVSKNLRTCHDCHCWMKI 492

Query: 481 VSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           +S++  R I +RDR  +H FE G CSC +YW
Sbjct: 493 LSRLLSRVIIVRDRIRFHQFEGGLCSCRDYW 523



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/293 (21%), Positives = 116/293 (39%), Gaps = 74/293 (25%)

Query: 7   FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFD 66
           + +D+   N +I      G    A+ VF +    DVV+WNSMI G VRN    E L+ F 
Sbjct: 84  WGFDLITANLIIASLMKVGEFDFAKRVFRKMLRRDVVTWNSMIGGCVRNERFEEALRFFR 143

Query: 67  KMPQRN----DVSWNSILGGLVRFGS---------------------------------- 88
           +M   N      ++ S++ G  R GS                                  
Sbjct: 144 EMLNSNVEPDGFTFASVINGCARLGSSHHAELVHGLMIEKKIQLNFILSSALIDLYSKCG 203

Query: 89  -VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLS 147
            ++ A +VFN +    +  W  +I+G A +G   +A+ +F +M+   + P+S   + +L+
Sbjct: 204 RINTAKKVFNSIQHDDVSVWNSMINGLAIHGLALDAIGVFSQMEMESVSPDSITFIGILT 263

Query: 148 ACAQLGALDYGNWVYSYIQKK-CIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
           AC+  G ++ G   +  +++   I+       A++D+  + G ++               
Sbjct: 264 ACSHCGLVEQGRRYFDLMRRHYSIQPQLEHYGAMVDLLGRAGLVE--------------- 308

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
                              E +  +K+  + PD + + A+LSAC +    E G
Sbjct: 309 -------------------EAYAMIKAMPMEPDIVIWRALLSACRNFKNPELG 342



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 12/167 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++++     +  + ++LI  YS CGR+  A+ VF+     DV  WNSMING   +G  L+
Sbjct: 179 LMIEKKIQLNFILSSALIDLYSKCGRINTAKKVFNSIQHDDVSVWNSMINGLAIHGLALD 238

Query: 61  GLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLI 111
            + +F +M       + +++  IL      G V+   R F+ M +       L  +  ++
Sbjct: 239 AIGVFSQMEMESVSPDSITFIGILTACSHCGLVEQGRRYFDLMRRHYSIQPQLEHYGAMV 298

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
               + G  +EA A+ + M    +EP+  I  +LLSAC      + G
Sbjct: 299 DLLGRAGLVEEAYAMIKAMP---MEPDIVIWRALLSACRNFKNPELG 342


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/549 (36%), Positives = 312/549 (56%), Gaps = 40/549 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
            +K SF  ++ + N L+  YS  G +  A  VF+   +  VVSW SMI GY R G     
Sbjct: 277 AIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMS 336

Query: 62  LKLFDKMP---------------------------------------QRNDVSWNSILGG 82
           ++LF +M                                        Q +    N+++  
Sbjct: 337 VRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDM 396

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + GS+ DA  VF++M  + +VSW  +I G+++N  P EAL LF EMQ  + +PNS  +
Sbjct: 397 YAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQ-YNSKPNSITM 455

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
             +L ACA L AL+ G  ++ +I +    LD  +  AL+DMY KCG++ LA  +F    +
Sbjct: 456 ACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPE 515

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           KD+ ++T  I G  M+G+  EA   F  M++ GI PD +S+I++L ACSH G +++G+ +
Sbjct: 516 KDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGF 575

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F+ M +   I+P+ +HYAC+VDLL RAG L +A  FI  MP++PD  IWG LL  CR++ 
Sbjct: 576 FNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYH 635

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           + ++ +++   + E +  + G Y+LL+NIY E  K E  +++R+ + +R +++ PGCS I
Sbjct: 636 DVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWI 695

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E+ G VH F+ GD SH    +I    ++   ++K  G+  + R  +   ++ EKE  +  
Sbjct: 696 EIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPKMRYALIKADDTEKEMALCG 755

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSEK+A+AFG++   PG  +R+ KN+R+C DCH   K +SK+ KR I +RD   +HHF+D
Sbjct: 756 HSEKIAMAFGILSLPPGKTVRVTKNLRVCGDCHEMAKFMSKMVKRDIILRDSNRFHHFKD 815

Query: 503 GSCSCLEYW 511
           GSCSC  +W
Sbjct: 816 GSCSCRGHW 824



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 100/351 (28%), Positives = 179/351 (50%), Gaps = 18/351 (5%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++  N    D  + + L+  Y  CG +R+ R +FD+  +  V  WN ++NGY + G   E
Sbjct: 126 IIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRE 185

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
            L LF +M +           G+ R   V+ A ++F+++  R ++SW  +ISG+  NG  
Sbjct: 186 SLSLFKRMREL----------GIRR---VESARKLFDELGDRDVISWNSMISGYVSNGLS 232

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
           ++ L LF +M  L +  + A +VS+++ C+  G L  G  ++ Y  K     +  L   L
Sbjct: 233 EKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCL 292

Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           +DMY+K G+++ A+QVF + G++ V ++TS I G A  G S  +  LF  M+ +GISPD 
Sbjct: 293 LDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDI 352

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
            +   +L AC+  G +E G    H+    + ++ +L     ++D+  + G + +A +  +
Sbjct: 353 FTITTILHACACTGLLENG-KDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFS 411

Query: 301 SMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNI 351
            M +K D V W T++G    +    +     N+ +E   N     I ++ I
Sbjct: 412 EMQVK-DIVSWNTMIGG---YSKNSLPNEALNLFVEMQYNSKPNSITMACI 458



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 99/248 (39%), Gaps = 52/248 (20%)

Query: 104 LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYS 163
           +  + + I  F + G  + A+ L  +    DLE  +    S+L  CA L ++  G  ++S
Sbjct: 68  ITDYNIEICRFCELGNLRRAMELINQSPKPDLELRT--YCSVLQLCADLKSIQDGRRIHS 125

Query: 164 YIQKKCIKLDSILCAALIDMYAKCGS---------------------------------- 189
            IQ   +++D +L + L+ MY  CG                                   
Sbjct: 126 IIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRE 185

Query: 190 ---------------IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK 234
                          ++ A ++F   GD+DV ++ S I G   NG S +  +LFE M   
Sbjct: 186 SLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLL 245

Query: 235 GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEE 294
           GI+ D  + ++V++ CS+ G +  G    H          EL    C++D+  ++G L  
Sbjct: 246 GINTDLATMVSVVAGCSNTGMLLLG-RALHGYAIKASFGKELTLNNCLLDMYSKSGNLNS 304

Query: 295 AENFIASM 302
           A     +M
Sbjct: 305 AIQVFETM 312


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 208/550 (37%), Positives = 312/550 (56%), Gaps = 40/550 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K+    D F+ + L+  Y   G   DA+ +FDE  + D+VSWNS+++G    G +   
Sbjct: 88  VIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGAC 147

Query: 62  LKLFDKMP-----QRNDVSW-----------------------------------NSILG 81
           L  F +M      Q N+V+                                    NS++ 
Sbjct: 148 LNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLIN 207

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G +D A ++F +MP RSLVSW  ++     NG  ++ + LF  M+   + P+ A 
Sbjct: 208 MYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQAT 267

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           +V+LL AC   G       +++YI +     D I+  AL+++YAK G ++ +  +F    
Sbjct: 268 MVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIK 327

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
           D+D  A+T+ + G A++    EA +LF+ M  +G+  D +++  +LSACSH G VE+G  
Sbjct: 328 DRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKK 387

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           YF  M +V+ ++P LDHY+CMVDLLGR+G LE+A   I SMPM+P + +WG LLGACRV+
Sbjct: 388 YFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVY 447

Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
            N E+G+ +   L+  D +    YI+LSNIY       +A +VR  M++R++ R PGCS 
Sbjct: 448 GNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTRNPGCSF 507

Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIG 441
           IE    +H F+ GD+ H ++ EI+   EE+++KI+  G   +T  V+ DI+EE K  +I 
Sbjct: 508 IEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIREAGCAPKTEFVLHDIDEEVKVDMIN 567

Query: 442 YHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
            HSEKLA+AFGL+ T  G  + I KN+RIC DCHS  K  S + KR I IRD K +HHF 
Sbjct: 568 KHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSKRFHHFA 627

Query: 502 DGSCSCLEYW 511
           DG CSC +YW
Sbjct: 628 DGLCSCRDYW 637



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 51/233 (21%), Positives = 112/233 (48%), Gaps = 4/233 (1%)

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
           +I+ SL+ A +   ++ Y + +++ + K     D  +   L+ MY K G  + A ++F  
Sbjct: 63  SIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDE 122

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK-GISPDSISYIAVLSACSHLGWVEK 258
             +KD+ ++ S + GL+  G+       F  M+++ G  P+ ++ ++V+SAC+ +G +++
Sbjct: 123 MPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDE 182

Query: 259 GFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
           G    H +    G+  +      ++++ G+ G L+ A      MP++   V W +++   
Sbjct: 183 G-KSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVR-SLVSWNSMVVIH 240

Query: 319 RVHRNAEMGQRIGNMLIESDQNHD-GRYILLSNIYVETLKGENAEEVRKTMRK 370
             +  AE G  + N++  +  N D    + L     +T  G  AE +   + +
Sbjct: 241 NHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHR 293


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/551 (36%), Positives = 319/551 (57%), Gaps = 44/551 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K+    D  + NSL+  Y+ CG    A  VF E  + DVVSW ++I G+V  G    G
Sbjct: 217 VIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEG-YGSG 275

Query: 62  LKLFDKM------PQ----------------------------RNDVSWNSILGGLV--- 84
           L++F++M      P                             +N +  N  +G  +   
Sbjct: 276 LRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDM 335

Query: 85  ----RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
               RF  ++DA  +FN++ KR L +W V+++G+AQ+G+ ++A+  F +MQ   ++PN  
Sbjct: 336 YAKNRF--LEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEF 393

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
            L S LS C+++  LD G  ++S   K     D  + +AL+DMYAKCG ++ A  VF   
Sbjct: 394 TLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGL 453

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
             +D  ++ + I G + +G   +A + FE M  +G  PD +++I VLSACSH+G +E+G 
Sbjct: 454 VSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGK 513

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
            +F+S+  ++GI P ++HYACMVD+LGRAG   E E+FI  M +  + +IW T+LGAC++
Sbjct: 514 KHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKM 573

Query: 321 HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS 380
           H N E G+R    L E +   D  YILLSN++      ++   VR  M  R +K+ PGCS
Sbjct: 574 HGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCS 633

Query: 381 LIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVI 440
            +E++G VH FL+ D SH K +EI+   +++ +K+ + GY   T  V+ ++ + EK+ ++
Sbjct: 634 WVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQKLMSVGYTPNTDHVLHNVSDREKQELL 693

Query: 441 GYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF 500
            YHSE+LALAF L+ T     IRI KN+RIC DCH  MK +S++  +++ +RD   +HHF
Sbjct: 694 FYHSERLALAFALLSTSTRKTIRIFKNLRICGDCHDFMKSISEITNQELVVRDINCFHHF 753

Query: 501 EDGSCSCLEYW 511
           ++GSCSC  +W
Sbjct: 754 KNGSCSCQNFW 764



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 151/361 (41%), Gaps = 54/361 (14%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+KN    D  + +SL+  Y  C  ++ AR V +E    DV  WN  ++       + E 
Sbjct: 15  VIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEA 74

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFG------------------------------ 87
           ++LF  M       N   + S++      G                              
Sbjct: 75  VQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTM 134

Query: 88  -----SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
                SV++  + F  M   +L S   L+SGF       +   +  ++     EPN    
Sbjct: 135 YMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTF 194

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           +S+L  CA  G L+ G  ++  + K  I  DS L  +L+++YAKCGS + A +VF    +
Sbjct: 195 ISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPE 254

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           +DV ++T+ I G    G+      +F  M ++G +P+  ++I++L +CS L  V+ G   
Sbjct: 255 RDVVSWTALITGFVAEGYG-SGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLG--- 310

Query: 263 FHSMFDVHG--IKPELDHY----ACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLG 316
                 VH   +K  LD        +VD+  +   LE+AE     + +K D   W  ++ 
Sbjct: 311 ----KQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRL-IKRDLFAWTVIVA 365

Query: 317 A 317
            
Sbjct: 366 G 366



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 117/265 (44%), Gaps = 3/265 (1%)

Query: 76  WNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDL 135
           W+S++   V+  S+  A +V  +MP + +  W   +S        +EA+ LF  M+   +
Sbjct: 27  WSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEAVQLFYLMRHTRI 86

Query: 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ 195
             N  I  SL+SA A LG   YG  +++ + K   + D ++  A + MY K  S++   Q
Sbjct: 87  RLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMYMKTQSVENGWQ 146

Query: 196 VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGW 255
            F +   +++++  + + G        +   +   +  +G  P+  ++I++L  C+  G 
Sbjct: 147 FFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGD 206

Query: 256 VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
           + +G    H      GI P+   +  +V++  + G    A      +P + D V W  L+
Sbjct: 207 LNEG-KAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPER-DVVSWTALI 264

Query: 316 GACRVHRNAEMGQRIGNMLIESDQN 340
               V      G RI N ++    N
Sbjct: 265 TG-FVAEGYGSGLRIFNQMLAEGFN 288



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 84/167 (50%), Gaps = 12/167 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           M +K   + D+FV ++L+  Y+ CG V DA  VFD     D VSWN++I GY ++G+  +
Sbjct: 417 MAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGK 476

Query: 61  GLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPK-----RSLVSWVVLI 111
            LK F+ M       ++V++  +L      G +++  + FN + K      ++  +  ++
Sbjct: 477 ALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMV 536

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
               + G+  E  +   EM+   L  N  I  ++L AC   G +++G
Sbjct: 537 DILGRAGKFHEVESFIEEMK---LTSNVLIWETVLGACKMHGNIEFG 580


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/550 (37%), Positives = 310/550 (56%), Gaps = 40/550 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K+    D F+ + L+  Y   G   DA+ +FDE  + D+VSWNS+++G    G +   
Sbjct: 165 VIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNRDLVSWNSLMSGLSGRGYLGAC 224

Query: 62  LKLFDKMP-----QRNDVSWNSILGGLVRFGSVDD------------------------- 91
           L  F +M      Q N+V+  S++      G++D+                         
Sbjct: 225 LNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDEGKSLHGVVVKLGMSGKAKVVNSLIN 284

Query: 92  ----------ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
                     A ++F +MP RSLVSW  ++     NG  ++ + LF  M+   + P+ A 
Sbjct: 285 MYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQAT 344

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           +V+LL AC   G       +++YI +     D I+  AL+++YAK G ++ +  +F    
Sbjct: 345 MVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIK 404

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
           D+D  A+T+ + G A++    EA +LF+ M  +G+  D +++  +LSACSH G VE+G  
Sbjct: 405 DRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKK 464

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           YF  M +V+ ++P LDHY+CMVDLLGR+G LE+A   I SMPM+P + +WG LLGACRV+
Sbjct: 465 YFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVY 524

Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
            N E+G+ +   L+  D +    YI+LSNIY        A +VR  M++R++ R PGCS 
Sbjct: 525 GNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRXASKVRXLMKERRLTRNPGCSF 584

Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIG 441
           IE    +H F+ GD+ H ++ EI+   EE+++KI   G   +T  V+ DI+EE K  +I 
Sbjct: 585 IEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIXEAGCAPKTEFVLHDIDEEVKVDMIN 644

Query: 442 YHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
            HSEKLA+AFGL+ T  G  + I KN+RIC DCHS  K  S + KR I IRD K +HHF 
Sbjct: 645 KHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSKRFHHFA 704

Query: 502 DGSCSCLEYW 511
           DG CSC +YW
Sbjct: 705 DGLCSCRDYW 714



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 106/256 (41%), Gaps = 44/256 (17%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +VVK   +    V NSLI  Y   G +  A  +F+E     +VSWNSM+  +  NG   +
Sbjct: 266 VVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEK 325

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVR----------------------------------- 85
           G+ LF+ M +       + +  L+R                                   
Sbjct: 326 GMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLN 385

Query: 86  ----FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
                G ++ +  +F ++  R  ++W  +++G+A +   +EA+ LF  M    +E +   
Sbjct: 386 LYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVT 445

Query: 142 LVSLLSACAQLGALDYGN---WVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH 198
              LLSAC+  G ++ G     + S + +   +LD   C  ++D+  + G ++ A ++  
Sbjct: 446 FTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSC--MVDLLGRSGRLEDAYELIK 503

Query: 199 SYGDKDVSAYTSAIFG 214
           S   +  S    A+ G
Sbjct: 504 SMPMEPSSGVWGALLG 519



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/233 (21%), Positives = 112/233 (48%), Gaps = 4/233 (1%)

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
           +I+ SL+ A +   ++ Y + +++ + K     D  +   L+ MY K G  + A ++F  
Sbjct: 140 SIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDE 199

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK-GISPDSISYIAVLSACSHLGWVEK 258
             ++D+ ++ S + GL+  G+       F  M+++ G  P+ ++ ++V+SAC+ +G +++
Sbjct: 200 MPNRDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDE 259

Query: 259 GFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
           G    H +    G+  +      ++++ G+ G L+ A      MP++   V W +++   
Sbjct: 260 G-KSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVR-SLVSWNSMVVIH 317

Query: 319 RVHRNAEMGQRIGNMLIESDQNHD-GRYILLSNIYVETLKGENAEEVRKTMRK 370
             +  AE G  + N++  +  N D    + L     +T  G  AE +   + +
Sbjct: 318 NHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHR 370


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 197/552 (35%), Positives = 322/552 (58%), Gaps = 44/552 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFD--ESDDLDVVSWNSMINGYVRNGEIL 59
           V +  F  DVFV+N LI  Y+ C R+  AR VF+     +  +VSW ++++ Y +NGE +
Sbjct: 145 VFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPM 204

Query: 60  EGLKLFDKMPQRNDVS--WNSILGGLVRF------------------------------- 86
           E L++F +M ++ DV   W +++  L  F                               
Sbjct: 205 EALEIFSQM-RKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISL 263

Query: 87  -------GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS 139
                  G V  A  +F++M   +L+ W  +ISG+A+NG  +EA+ +F EM + D+ P++
Sbjct: 264 NTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDT 323

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
             + S +SACAQ+G+L+    +Y Y+ +   + D  + +ALIDM+AKCGS++ A  VF  
Sbjct: 324 ISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDR 383

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
             D+DV  +++ I G  ++G + EA  L+  M+  G+ P+ ++++ +L AC+H G V +G
Sbjct: 384 TLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREG 443

Query: 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACR 319
           +++F+ M D H I P+  HYAC++DLLGRAG L++A   I  MP++P   +WG LL AC+
Sbjct: 444 WWFFNRMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACK 502

Query: 320 VHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGC 379
            HR+ E+G+     L   D ++ G Y+ LSN+Y      +   EVR  M+++ + +  GC
Sbjct: 503 KHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGC 562

Query: 380 SLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETV 439
           S +E+ G +  F  GD+SH + +EI +  E I  ++K  G+     + + D+ +EE E  
Sbjct: 563 SWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEET 622

Query: 440 IGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHH 499
           +  HSE++A+A+GLI T  G+ +RI KN+R C +CH+A KL+SK+  R+I +RD   +HH
Sbjct: 623 LCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHH 682

Query: 500 FEDGSCSCLEYW 511
           F+DG CSC +YW
Sbjct: 683 FKDGVCSCGDYW 694



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 101/359 (28%), Positives = 170/359 (47%), Gaps = 51/359 (14%)

Query: 12  FVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQR 71
           F+   LI   S  G +  AR VFD+     +  WN++I GY RN    + L ++  M Q 
Sbjct: 54  FLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNM-QL 112

Query: 72  NDVSWNSI----------------LGGLV-----RFGSVDDA------------CR---- 94
             VS +S                 +G  V     R G   D             CR    
Sbjct: 113 ARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGS 172

Query: 95  ---VFN--QMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
              VF    +P+R++VSW  ++S +AQNG P EAL +F +M+ +D++P+   LVS+L+A 
Sbjct: 173 ARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAF 232

Query: 150 AQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYT 209
             L  L  G  +++ + K  ++++  L  +L  MYAKCG +  A  +F      ++  + 
Sbjct: 233 TCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWN 292

Query: 210 SAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDV 269
           + I G A NG++ EA ++F  M +K + PD+IS  + +SAC+ +G +E+      SM++ 
Sbjct: 293 AMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQA----RSMYEY 348

Query: 270 HGIKPELDHY---ACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAE 325
            G     D     + ++D+  + G +E A   +    +  D V+W  ++    +H  A 
Sbjct: 349 VGRSDYRDDVFISSALIDMFAKCGSVEGAR-LVFDRTLDRDVVVWSAMIVGYGLHGRAR 406



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 65/149 (43%), Gaps = 2/149 (1%)

Query: 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFE 229
           ++    L   LI   +  G I  A QVF       +  + + I G + N H  +A  ++ 
Sbjct: 49  LQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYS 108

Query: 230 NMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRA 289
           NM+   +SPDS ++  +L ACS L  ++ G +    +F + G   ++     ++ L  + 
Sbjct: 109 NMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRL-GFDADVFVQNGLIALYAKC 167

Query: 290 GLLEEAENFIASMPMKPDNVI-WGTLLGA 317
             L  A      +P+    ++ W  ++ A
Sbjct: 168 RRLGSARTVFEGLPLPERTIVSWTAIVSA 196


>gi|125558027|gb|EAZ03563.1| hypothetical protein OsI_25699 [Oryza sativa Indica Group]
          Length = 528

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/528 (38%), Positives = 321/528 (60%), Gaps = 46/528 (8%)

Query: 29  DARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM-------------------- 68
           DAR  FDE  D + V   +M +GYVRN  +   L+LF  M                    
Sbjct: 2   DARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSA 61

Query: 69  ----P-----------------QRNDVSWNSILGGLVRFGSVD--DACRVFNQMPKRSLV 105
               P                 +RN    N++L    + GS D   A +VF+ M +R +V
Sbjct: 62  SARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDVV 120

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLD--LEPNSAILVSLLSACAQLGALDYGNWVYS 163
           SW  +I+ +AQNG   EA+ L+ +M ++   ++ N+  L ++L ACA  GA+  G  +++
Sbjct: 121 SWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKHIHN 180

Query: 164 YIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIE 223
            + +  ++ +  +  +++DMY+KCG +++A + F    +K++ ++++ I G  M+G   E
Sbjct: 181 QVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQE 240

Query: 224 AFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMV 283
           A E+F  MK  G+ P+ I++I+VL+ACSH G +++G Y++++M    GI+  ++HY CMV
Sbjct: 241 ALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMV 300

Query: 284 DLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDG 343
           DLLGRAG L+EA + I  M +KPD  IWG LL ACR+H+N E+ +     L E D ++ G
Sbjct: 301 DLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDASNSG 360

Query: 344 RYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQE 403
            Y+LLSNIY E    ++ E +R  ++ R+I++ PG S  EL G ++ F  GD+SH +  E
Sbjct: 361 YYVLLSNIYAEAGMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIE 420

Query: 404 IYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIR 463
           IY + E+++++++  GY   T SV+ D++EEEKE+ +  HSEKLA+AF L+ + P SVI 
Sbjct: 421 IYSYLEKLLERMQEAGYVPNTGSVLHDLDEEEKESALRIHSEKLAVAFALMNSVPRSVIH 480

Query: 464 IVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           I+KN+R+CSDCH+AMK ++K+ +R+I IRD + +HHF+DG CSC +YW
Sbjct: 481 IIKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 528



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 83/157 (52%), Gaps = 12/157 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VV+     +V+V  S++  YS CGRV  A   F +  + +++SW++MI GY  +G   E 
Sbjct: 182 VVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEA 241

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLIS 112
           L++F +M +     N +++ S+L      G +D+    +N M +       +  +  ++ 
Sbjct: 242 LEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVD 301

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
              + G   EA +L +EM+   ++P++AI  +LLSAC
Sbjct: 302 LLGRAGCLDEAYSLIKEMK---VKPDAAIWGALLSAC 335


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 208/550 (37%), Positives = 312/550 (56%), Gaps = 40/550 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K+    D F+ + L+  Y   G   DA+ +FDE  + D+VSWNS+++G    G +   
Sbjct: 145 VIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGAC 204

Query: 62  LKLFDKMP-----QRNDVSW-----------------------------------NSILG 81
           L  F +M      Q N+V+                                    NS++ 
Sbjct: 205 LNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLIN 264

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G +D A ++F +MP RSLVSW  ++     NG  ++ + LF  M+   + P+ A 
Sbjct: 265 MYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQAT 324

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           +V+LL AC   G       +++YI +     D I+  AL+++YAK G ++ +  +F    
Sbjct: 325 MVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIK 384

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
           D+D  A+T+ + G A++    EA +LF+ M  +G+  D +++  +LSACSH G VE+G  
Sbjct: 385 DRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKK 444

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           YF  M +V+ ++P LDHY+CMVDLLGR+G LE+A   I SMPM+P + +WG LLGACRV+
Sbjct: 445 YFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVY 504

Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
            N E+G+ +   L+  D +    YI+LSNIY       +A +VR  M++R++ R PGCS 
Sbjct: 505 GNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTRNPGCSF 564

Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIG 441
           IE    +H F+ GD+ H ++ EI+   EE+++KI+  G   +T  V+ DI+EE K  +I 
Sbjct: 565 IEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIREAGCAPKTEFVLHDIDEEVKVDMIN 624

Query: 442 YHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
            HSEKLA+AFGL+ T  G  + I KN+RIC DCHS  K  S + KR I IRD K +HHF 
Sbjct: 625 KHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSKRFHHFA 684

Query: 502 DGSCSCLEYW 511
           DG CSC +YW
Sbjct: 685 DGLCSCRDYW 694



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 140/308 (45%), Gaps = 24/308 (7%)

Query: 64  LFDKMPQRNDVSWNSILGGLVRFGSVDDACRVF-----NQMPKRSLVSWVVLISGFAQNG 118
           +F++   R  V WNSI+   VR G+     R F     + +PK+           F  N 
Sbjct: 54  VFNQQLTRLAVPWNSIVSP-VRCGTSISHNRSFAFRHTDLIPKQ--------FKRFNTN- 103

Query: 119 RPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCA 178
              +   +FRE     +    +I+ SL+ A +   ++ Y + +++ + K     D  +  
Sbjct: 104 ---KGCCIFREASQFIVV--YSIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGD 158

Query: 179 ALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK-GIS 237
            L+ MY K G  + A ++F    +KD+ ++ S + GL+  G+       F  M+++ G  
Sbjct: 159 RLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQ 218

Query: 238 PDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAEN 297
           P+ ++ ++V+SAC+ +G +++G    H +    G+  +      ++++ G+ G L+ A  
Sbjct: 219 PNEVTLLSVVSACADMGALDEG-KSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQ 277

Query: 298 FIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD-GRYILLSNIYVETL 356
               MP++   V W +++     +  AE G  + N++  +  N D    + L     +T 
Sbjct: 278 LFEEMPVR-SLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTG 336

Query: 357 KGENAEEV 364
            G  AE +
Sbjct: 337 LGRQAESI 344


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 215/537 (40%), Positives = 302/537 (56%), Gaps = 38/537 (7%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVR---NGEILEGLKLFDK 67
           +F+ N LI  Y     + DA  +FD+    +V+SW +MI+ Y +   + + LE L L  +
Sbjct: 96  MFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLR 155

Query: 68  MPQRNDV-SWNSILGG--------------------------------LVRFGSVDDACR 94
              R +V +++S+L                                    + G  +DA  
Sbjct: 156 DNVRPNVYTYSSVLRSCNGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALS 215

Query: 95  VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA 154
           VF++M     + W  +I GFAQN R   AL LF+ M+        A L S+L AC  L  
Sbjct: 216 VFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLAL 275

Query: 155 LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFG 214
           L+ G   + +I K     D IL  AL+DMY KCGS++ A++VF+   ++DV  +++ I G
Sbjct: 276 LELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISG 333

Query: 215 LAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP 274
           LA NG+S EA +LFE MKS G  P+ I+ + VL ACSH G +E G+YYF SM  ++GI P
Sbjct: 334 LAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDP 393

Query: 275 ELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNML 334
             +HY CM+DLLG+AG L++A   +  M  +PD V W TLLGACRV RN  + +     +
Sbjct: 394 VREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKV 453

Query: 335 IESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAG 394
           I  D    G Y LLSNIY  + K ++ EE+R  MR R IK+ PGCS IE++  +H F+ G
Sbjct: 454 IALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIG 513

Query: 395 DRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLI 454
           D SH +  E+ +   +++ ++   GY  ET  V+ D+E E+ E  + +HSEKLALAFGL+
Sbjct: 514 DNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLM 573

Query: 455 CTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
                 VIRI KN+RIC DCH   KL SK+  R I IR    YHHF+DG CSC +YW
Sbjct: 574 TLPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRGPIRYHHFQDGKCSCGDYW 630



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 115/236 (48%), Gaps = 40/236 (16%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K     DVFV+++LI  ++  G   DA  VFDE    D + WNS+I G+ +N      
Sbjct: 185 IIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVA 244

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRF----------------------------------- 86
           L+LF +M +   ++  + L  ++R                                    
Sbjct: 245 LELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLILNNALVDMYC 304

Query: 87  --GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
             GS++DA RVFNQM +R +++W  +ISG AQNG  +EAL LF  M+S   +PN   +V 
Sbjct: 305 KCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVG 364

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSIL--CAALIDMYAKCGSIDLAMQVFH 198
           +L AC+  G L+ G W Y    KK   +D +      +ID+  K G +D A+++ +
Sbjct: 365 VLFACSHAGLLEDG-WYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLN 419



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 84/173 (48%), Gaps = 16/173 (9%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM- 68
           D+ + N+L+  Y  CG + DA  VF++  + DV++W++MI+G  +NG   E LKLF++M 
Sbjct: 292 DLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMK 351

Query: 69  ---PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWV-----VLISGFAQNGRP 120
               + N ++   +L      G ++D    F  M K   +  V      +I    + G+ 
Sbjct: 352 SSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKL 411

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD 173
            +A+ L  EM+    EP++    +LL AC     +     +  Y  KK I LD
Sbjct: 412 DDAVKLLNEMEC---EPDAVTWRTLLGAC----RVQRNMVLAEYAAKKVIALD 457



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 95/214 (44%), Gaps = 10/214 (4%)

Query: 108 VVLISGFA----QNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYS 163
            +L+S F     Q   P+ A+     +QS  L  +SA    L+  C    A+  GN +  
Sbjct: 27  TLLLSEFTRLCYQRDLPR-AMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICR 85

Query: 164 YIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIE 223
           ++     +    L   LI+MY K   ++ A Q+F     ++V ++T+ I   +      +
Sbjct: 86  HLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQK 145

Query: 224 AFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMV 283
           A EL   M    + P+  +Y +VL +C+ +  V       H      G++ ++   + ++
Sbjct: 146 ALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVR----MLHCGIIKEGLESDVFVRSALI 201

Query: 284 DLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
           D+  + G  E+A +    M +  D ++W +++G 
Sbjct: 202 DVFAKLGEPEDALSVFDEM-VTGDAIVWNSIIGG 234


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/535 (37%), Positives = 306/535 (57%), Gaps = 33/535 (6%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D   + S+I      GRV +AR +FDE  +  V++W +M+ GY +N  + +  K+FD MP
Sbjct: 171 DNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMP 230

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQ------------- 116
           ++ +VSW S+L G V+ G ++DA  +F  MP + +++   +ISG  Q             
Sbjct: 231 EKTEVSWTSMLMGYVQNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDS 290

Query: 117 ------------------NGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
                             NG   EAL LF  MQ   + P    L+S+LS CA L +L +G
Sbjct: 291 MKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHG 350

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
             V++ + +    +D  + + L+ MY KCG +  +  +F  +  KD+  + S I G A +
Sbjct: 351 KQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASH 410

Query: 219 GHSIEAFELFENMKSKG-ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELD 277
           G   EA ++F  M   G   P+ ++++A LSACS+ G VE+G   + SM  V G+KP   
Sbjct: 411 GLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITA 470

Query: 278 HYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIES 337
           HYACMVD+LGRAG   EA   I SM ++PD  +WG+LLGACR H   ++ +     LIE 
Sbjct: 471 HYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEI 530

Query: 338 DQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGD-R 396
           +  + G YILLSN+Y    +  +  E+RK M+ R ++++PGCS  E++  VH F  G   
Sbjct: 531 EPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGIN 590

Query: 397 SHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICT 456
           SH + + I +  +E+   ++  GYN +    + D++EEEK   + YHSE+LA+A+ L+  
Sbjct: 591 SHPEQESILKILDELDGLLREAGYNPDCSYALHDVDEEEKVNSLKYHSERLAVAYALLKL 650

Query: 457 KPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
             G  IR++KN+R+CSDCH+A+K++SKV +R+I +RD   +HHF +G CSC +YW
Sbjct: 651 SEGIPIRVMKNLRVCSDCHTAIKIISKVKEREIILRDANRFHHFRNGECSCKDYW 705



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 155/304 (50%), Gaps = 24/304 (7%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDV 74
           N  I   S  G++ +AR +FD  D   + SWNSM+ GY  N    +  KLFD+MP RN +
Sbjct: 21  NVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNII 80

Query: 75  SWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD 134
           SWN ++ G ++ G +D+A +VF+ MP+R++VSW  L+ G+  NG+   A +LF +M    
Sbjct: 81  SWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMP--- 137

Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
            E N      +L    Q G +D    +Y  I  K    D+I   ++I    K G +D A 
Sbjct: 138 -EKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDK----DNIARTSMIHGLCKEGRVDEAR 192

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
           ++F    ++ V  +T+ + G   N    +A ++F+ M  K      +S+ ++L     +G
Sbjct: 193 EIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEK----TEVSWTSML-----MG 243

Query: 255 WVEKG-FYYFHSMFDVHGIKPELDHYAC--MVDLLGRAGLLEEAENFIASMPMKPDNVIW 311
           +V+ G       +F+V  +KP +   AC  M+  LG+ G + +A     SM  + D   W
Sbjct: 244 YVQNGRIEDAEELFEVMPVKPVI---ACNAMISGLGQKGEIAKARRVFDSMKERND-ASW 299

Query: 312 GTLL 315
            T++
Sbjct: 300 QTVI 303



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 99/200 (49%), Gaps = 20/200 (10%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +V+  F  DV+V + L+  Y  CG +  ++ +FD     D++ WNS+I+GY  +G   E 
Sbjct: 357 LVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEA 416

Query: 62  LKLFDKMP-----QRNDVSWNSILGGLVRFGSVDDACRVFNQMP-----KRSLVSWVVLI 111
           LK+F +MP     + N+V++ + L      G V++  +++  M      K     +  ++
Sbjct: 417 LKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMV 476

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK 171
               + GR  EA+ +   + S+ +EP++A+  SLL AC     LD    V  +  KK I+
Sbjct: 477 DMLGRAGRFNEAMEM---IDSMTVEPDAAVWGSLLGACRTHSQLD----VAEFCAKKLIE 529

Query: 172 LDSILCAALI---DMYAKCG 188
           ++       I   +MYA  G
Sbjct: 530 IEPENSGTYILLSNMYASQG 549


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/551 (37%), Positives = 321/551 (58%), Gaps = 41/551 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K  +   V++   LI  Y+ C  +  AR VFDE  + +VVSW +MI+GY + G   E 
Sbjct: 36  MIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMRERNVVSWTAMISGYSQRGFASEA 95

Query: 62  LKLFDKM----PQRNDVSWNSILGGLVRF------------------------------- 86
           L LF +M     + N+ ++ ++L     F                               
Sbjct: 96  LHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIHSHIFKRNYENHIFVGSSLLDM 155

Query: 87  ----GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
               G + +A  VF  +P+R +VS   +ISG+AQ G  +EAL LF  +Q   +  N    
Sbjct: 156 YAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMSSNYVTY 215

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            SLL+A + L ALD+G  V+S++ +  +    +L  +LIDMY+KCG+++ A ++F++   
Sbjct: 216 ASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPV 275

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG-ISPDSISYIAVLSACSHLGWVEKGFY 261
           + V ++ + + G + +G  IE  +LF+ M+ +  + PDS++++AVLS CSH G  +KG  
Sbjct: 276 RTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCSHGGLEDKGLE 335

Query: 262 YFHSMFDVHG-IKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
            F  M +    I+  ++HY C++DLLGRAG +EEA   I  MP +P   IWG+LLGACRV
Sbjct: 336 MFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEAFELIKKMPFEPTAAIWGSLLGACRV 395

Query: 321 HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS 380
           H N  +G+ +G  L+E +  + G Y++LSN+Y    + E+   VR+ M ++ + + PG S
Sbjct: 396 HSNTNIGEFVGCRLLEIEPENAGNYVILSNLYASAGRWEDVRNVRELMMEKAVIKEPGRS 455

Query: 381 LIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVI 440
            IELD  +H F A DRSH + +E++    E++ K K  GY  +   V++D++EE+KE ++
Sbjct: 456 WIELDQTIHTFYASDRSHPRREEVFLKVRELLVKFKESGYVPDQSCVLYDVDEEQKEKIL 515

Query: 441 GYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF 500
             HSEKLALAFGLI T  G  +R++KN+RIC DCH+  K VSKV+ R++SIRD+  +HH 
Sbjct: 516 LGHSEKLALAFGLISTSEGVPLRVIKNLRICVDCHNFAKFVSKVYGRQVSIRDKNRFHHV 575

Query: 501 EDGSCSCLEYW 511
             G CSC +YW
Sbjct: 576 AGGICSCGDYW 586



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 1/161 (0%)

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           LL+ C    A+  G  V++++ K C      L   LI +Y KC  +  A  VF    +++
Sbjct: 16  LLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMRERN 75

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           V ++T+ I G +  G + EA  LF  M      P+  ++  VLS+C+     E G    H
Sbjct: 76  VVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELG-RQIH 134

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMK 305
           S       +  +   + ++D+  +AG + EA      +P +
Sbjct: 135 SHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPER 175


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/544 (37%), Positives = 304/544 (55%), Gaps = 40/544 (7%)

Query: 7   FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFD 66
           F +D  +   L+  Y VC  +  AR +FD     ++  WN +I GY  NG     ++L+ 
Sbjct: 106 FGFDTVIATKLVNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYY 165

Query: 67  KMPQRNDVSWN---------------------------------------SILGGLVRFG 87
           +M     V  N                                       +++    + G
Sbjct: 166 QMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCG 225

Query: 88  SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLS 147
            V  A  VF+++  R  V W  +++ ++QNG P   L+L  EM    L P  A LV+ +S
Sbjct: 226 CVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAIS 285

Query: 148 ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSA 207
           A A   AL  G  ++    ++  +    +  AL+DMYAKCGS+ +A  +F   G K V +
Sbjct: 286 ASADNAALPQGRELHGLSWRQEFESHDKVKTALVDMYAKCGSVRVARNLFERLGVKRVVS 345

Query: 208 YTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMF 267
           + + I G AM+GH+ EA +LFE M ++   PD I+++ VLSACSH G +E+G+ +F +M 
Sbjct: 346 WNAMITGYAMHGHATEALDLFEEM-NRVAKPDHITFVGVLSACSHGGLLEEGWMFFETMI 404

Query: 268 DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMG 327
             + I P + HY CMVDLLG +G L+EA N I  M + PD+ +WG LL +C++H N E+G
Sbjct: 405 RDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELG 464

Query: 328 QRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGV 387
           +     LIE + +  G Y++LSNIY +  K E   ++RK M  R++K++  CS IE+   
Sbjct: 465 EIALERLIELEPDDAGNYVILSNIYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNK 524

Query: 388 VHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKL 447
           VH FL+GD SH  + EIY   E +   +K  GY+  T SV  D+E++EK  ++  HSE+L
Sbjct: 525 VHAFLSGDTSHPLSDEIYSELERVGGLMKEAGYSPSTGSVFHDVEDDEKANMVCSHSERL 584

Query: 448 ALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSC 507
           A+AFGLI T PG+ + I KN+RIC DCH A+K +SK+ +R+I++RD   YHHF+DG CSC
Sbjct: 585 AIAFGLISTPPGTRLLITKNLRICEDCHVAIKFISKITEREITVRDVNRYHHFKDGVCSC 644

Query: 508 LEYW 511
            +YW
Sbjct: 645 GDYW 648



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 127/297 (42%), Gaps = 73/297 (24%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGE---- 57
           VV+  +  DVFV  +LI  Y+ CG V  AR VFD+    D V WNSM+  Y +NG     
Sbjct: 202 VVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDAC 261

Query: 58  -------ILEGLKLFD--------------KMPQRND---VSW-----------NSILGG 82
                  +L GL+  +               +PQ  +   +SW            +++  
Sbjct: 262 LSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHDKVKTALVDM 321

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + GSV  A  +F ++  + +VSW  +I+G+A +G   EAL LF EM  +  +P+    
Sbjct: 322 YAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEMNRV-AKPDHITF 380

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           V +LSAC+  G L+ G W++     +  K+D                             
Sbjct: 381 VGVLSACSHGGLLEEG-WMFFETMIRDYKIDPT--------------------------- 412

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
             V  YT  +  L  +G   EA+ L   MK   + PDS  + A+L++C     VE G
Sbjct: 413 --VQHYTCMVDLLGHSGRLDEAYNLIMQMK---VLPDSGVWGALLNSCKIHANVELG 464



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 86/187 (45%), Gaps = 2/187 (1%)

Query: 131 QSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSI 190
           +S  L P  +   SLL +C    A+  G  +++ +       D+++   L+++Y  C S+
Sbjct: 67  ESTCLTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSL 126

Query: 191 DLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250
             A  +F      ++  +   I G A NG    A +L+  M   G+ PD+ ++  VL AC
Sbjct: 127 SSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKAC 186

Query: 251 SHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVI 310
           + L  +E G    H      G + ++   A ++D+  + G +  A      + ++ D V+
Sbjct: 187 AALSAIEHG-REIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVR-DAVL 244

Query: 311 WGTLLGA 317
           W ++L A
Sbjct: 245 WNSMLAA 251


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 223/547 (40%), Positives = 307/547 (56%), Gaps = 39/547 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVR---NGEI 58
           V  N +    F+ N+LI  Y   G + +AR +FDE  D +VVSW +MI+ Y     N + 
Sbjct: 42  VFSNGYEPKTFLINTLINMYVKFGLLDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKA 101

Query: 59  LEGLKLFDKMPQR-NDVSWNSIL---GGLV-----------------------------R 85
           L+ L L  +   R N  +++S+L    GL+                             +
Sbjct: 102 LDFLILMLREGVRPNMYTYSSVLRACDGLLNLRQLHGSILKVGLESDVFVRSALIDTYSK 161

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
            G   DA  VFN+M    LV W  +I GFAQN    E L L++ M+  D   + + L S+
Sbjct: 162 LGEQHDALNVFNEMITGDLVVWNSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSV 221

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVF-HSYGDKD 204
           L AC  L  L+ G  V+ ++ K     D IL  AL+DMY KCGS++ A  +F     +KD
Sbjct: 222 LRACTGLALLELGRQVHVHVLK--YDQDLILNNALLDMYCKCGSLEDANLLFTRMMTEKD 279

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           V ++++ I GLA NG S +A +LFE MKSKG  P+ I+ + VL ACSH G V  G+YYF 
Sbjct: 280 VISWSTMIAGLAQNGFSADALKLFEAMKSKGPKPNYITILGVLFACSHAGLVNDGWYYFQ 339

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
           SM +  GI P  +HY C++DLLGRAG L+EA   I  M  +PD V W  LLGACRVH+N 
Sbjct: 340 SMKEHFGIDPGREHYGCIIDLLGRAGKLDEAVKLIHEMNHEPDAVTWRILLGACRVHKNV 399

Query: 325 EMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIEL 384
           ++       +++ D    G YILLSNIY  + K E+  EVR+ MR R +K+ PGCS IE+
Sbjct: 400 DLAIYAAKEILKLDPADAGTYILLSNIYANSQKWEDVAEVRRKMRTRGVKKDPGCSWIEV 459

Query: 385 DGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHS 444
              VH F+ GD SH + +EI +   ++++++   GY  +T  V+ D+E E+ E  + YHS
Sbjct: 460 SKQVHAFILGDNSHPRIEEIKRELSQLIQRLMRLGYVPDTNFVLQDLEGEQMEDSLQYHS 519

Query: 445 EKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGS 504
           EKLA+ FGL+       I I KN+RIC DCH   KLVS++  R I IRD   YHHF  G 
Sbjct: 520 EKLAIVFGLMSLPNQKTIHIRKNLRICGDCHIFAKLVSQLENRVIVIRDPIRYHHFRGGV 579

Query: 505 CSCLEYW 511
           CSC +YW
Sbjct: 580 CSCGDYW 586



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 84/183 (45%), Gaps = 5/183 (2%)

Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
           L  ++     L+  C   GA+     V+ ++     +  + L   LI+MY K G +D A 
Sbjct: 12  LSADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKFGLLDEAR 71

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
            +F    D++V ++T+ I   + +  + +A +    M  +G+ P+  +Y +VL AC  L 
Sbjct: 72  NLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRACDGLL 131

Query: 255 WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTL 314
            + +     H      G++ ++   + ++D   + G   +A N    M +  D V+W ++
Sbjct: 132 NLRQ----LHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEM-ITGDLVVWNSI 186

Query: 315 LGA 317
           +G 
Sbjct: 187 IGG 189


>gi|326532850|dbj|BAJ89270.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 580

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 195/443 (44%), Positives = 273/443 (61%), Gaps = 13/443 (2%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALF----REMQS 132
            ++L    +   +  A +VF++M  R + SW  L++G AQ   P  ALALF    R  Q 
Sbjct: 143 TTLLDSYAKCDELASARKVFDEMTVRDVASWNALLAGLAQGTEPSLALALFHRLVRSFQE 202

Query: 133 LDLE--PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSI 190
           L     PN   +++ LSACAQ+G+L  G  V+ + +K  +  +  +C ALIDMY+KCGS+
Sbjct: 203 LPPREAPNVVTIIAALSACAQIGSLQDGLCVHEFARKIGVGGNVRVCNALIDMYSKCGSL 262

Query: 191 DLAMQVFHSYG--DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248
             A++VFHS    D+ + +Y +AI  ++M+GH  +A +LF+ M +  I PD ++YIAVL 
Sbjct: 263 ARALEVFHSIKREDRTLVSYNTAIQAISMHGHGGDALKLFDEMPT-CIEPDEVTYIAVLC 321

Query: 249 ACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDN 308
            C+H G V++G   FH M     + P + HY  +VDLLGRAG L EA + I SMP   D 
Sbjct: 322 GCNHAGLVDEGLRVFHGMR----VPPNVKHYGTVVDLLGRAGRLAEAYDTIKSMPFPADI 377

Query: 309 VIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTM 368
           V+W TLLGA + H + E+ +     L E   N DG Y+LLSN+Y    +  +   VR TM
Sbjct: 378 VLWQTLLGASKTHGDVELAEVAATKLTELGSNVDGDYVLLSNVYASKARWADVGRVRDTM 437

Query: 369 RKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVM 428
           R   +++ PG S  E+ GV+H+F+ GD+ H + QEIY+   EI+ +I   GY  ET +V+
Sbjct: 438 RSNDVRKVPGFSYTEISGVMHKFINGDKEHPRLQEIYRALGEIMSRIGELGYEPETSNVL 497

Query: 429 FDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRK 488
            DI EEEK+  + YHSEKLA+AFGLI T PG  +R++KNIRIC DCH   KL+SK + R 
Sbjct: 498 HDIGEEEKQYALSYHSEKLAIAFGLIATPPGETLRVIKNIRICGDCHVVAKLISKAYGRA 557

Query: 489 ISIRDRKHYHHFEDGSCSCLEYW 511
           I IRDR  +H FEDG CSC +YW
Sbjct: 558 IIIRDRARFHRFEDGQCSCSDYW 580



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 88/209 (42%), Gaps = 48/209 (22%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V++     DV +  +L+  Y+ C  +  AR VFDE    DV SWN+++ G  +  E   
Sbjct: 129 LVLRLGCTADVRLITTLLDSYAKCDELASARKVFDEMTVRDVASWNALLAGLAQGTEPSL 188

Query: 61  GLKLFDK-------MPQRNDVSWNSIL---------------------------GGLVRF 86
            L LF +       +P R   +  +I+                           GG VR 
Sbjct: 189 ALALFHRLVRSFQELPPREAPNVVTIIAALSACAQIGSLQDGLCVHEFARKIGVGGNVRV 248

Query: 87  -----------GSVDDACRVFNQMPK--RSLVSWVVLISGFAQNGRPKEALALFREMQSL 133
                      GS+  A  VF+ + +  R+LVS+   I   + +G   +AL LF EM + 
Sbjct: 249 CNALIDMYSKCGSLARALEVFHSIKREDRTLVSYNTAIQAISMHGHGGDALKLFDEMPTC 308

Query: 134 DLEPNSAILVSLLSACAQLGALDYGNWVY 162
            +EP+    +++L  C   G +D G  V+
Sbjct: 309 -IEPDEVTYIAVLCGCNHAGLVDEGLRVF 336


>gi|414867547|tpg|DAA46104.1| TPA: hypothetical protein ZEAMMB73_772392 [Zea mays]
          Length = 677

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/544 (37%), Positives = 315/544 (57%), Gaps = 43/544 (7%)

Query: 7   FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFD 66
           + +DVFV ++L+  YS CG + +A  VFD     D V+W++M+ G+V  G  +E L ++ 
Sbjct: 138 YGHDVFVCSALLHLYSRCGAMEEAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEALAMYS 197

Query: 67  KMPQ--------------------------------------RNDV-SWNSILGGLVRFG 87
           +M +                                      R DV +  S++    + G
Sbjct: 198 RMREHGVSDDEVVMVGVIQACMSTGNARIGASVHGRLLRHCMRMDVVTTTSLVSMYAKNG 257

Query: 88  SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLS 147
            +D AC+VF  MP R+ V+W  LISGFAQNGR  EAL LFRE+Q+  L+P S  LVS L 
Sbjct: 258 HLDVACQVFRMMPYRNDVTWSALISGFAQNGRAVEALDLFRELQADGLQPCSWALVSALL 317

Query: 148 ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSA 207
           ACA +G L  G  ++ +I ++ ++   IL  A++DMY+KCGS++ A ++F+    +D+  
Sbjct: 318 ACASVGFLKLGKSIHGFILRR-LEWQCILGTAVLDMYSKCGSLESARKLFNKLSSRDLVL 376

Query: 208 YTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMF 267
           + + I     +G   +A  LF+ +   GI PD  ++ ++LSA SH G VE+G ++F  M 
Sbjct: 377 WNAIIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMI 436

Query: 268 DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMG 327
              GI+P   HY C+VDLL R+GL+EEA + +ASM  +P   IW  LL  C  ++  E+G
Sbjct: 437 KEFGIEPAEKHYVCIVDLLARSGLVEEANDMLASMQTEPTIAIWVILLSGCLNNKKLELG 496

Query: 328 QRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGV 387
           + I   ++E      G   L+SN+Y    K +   E+RK M+    K+ PG SLIE+ G 
Sbjct: 497 ETIAKKILELRPEDIGVLALVSNLYAAAKKWDKVREIRKLMKDSGSKKVPGYSLIEVKGT 556

Query: 388 VHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKL 447
            H F+  D+SH + +EI +   ++  +++  GY   T  V  D++E++   ++ YHSE+L
Sbjct: 557 RHAFVMEDQSHPQHREILKMVAKLNSEMRKLGYVPRTEFVYHDLDEDQ---LLSYHSERL 613

Query: 448 ALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSC 507
           A+AFGL+ T PG+ + I+KN+R+C DCH A+K +SK+  R+I +RD K +HHF+DG+CSC
Sbjct: 614 AIAFGLLNTSPGTRLVIIKNLRVCGDCHDAIKYISKIVDREIVVRDAKRFHHFKDGACSC 673

Query: 508 LEYW 511
            +YW
Sbjct: 674 GDYW 677



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 100/209 (47%), Gaps = 3/209 (1%)

Query: 107 WVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQ 166
           W  L+S  ++ G P  AL +FR + S    PNS      L+ACA+LG LD    V     
Sbjct: 76  WNGLLSAHSRAGAPGAALRVFRALPS-SARPNSTTFTLTLTACARLGDLDAAESVRVRAF 134

Query: 167 KKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFE 226
                 D  +C+AL+ +Y++CG+++ A++VF     KD  A+++ + G    G  +EA  
Sbjct: 135 AAGYGHDVFVCSALLHLYSRCGAMEEAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEALA 194

Query: 227 LFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLL 286
           ++  M+  G+S D +  + V+ AC   G    G    H     H ++ ++     +V + 
Sbjct: 195 MYSRMREHGVSDDEVVMVGVIQACMSTGNARIG-ASVHGRLLRHCMRMDVVTTTSLVSMY 253

Query: 287 GRAGLLEEAENFIASMPMKPDNVIWGTLL 315
            + G L+ A      MP + D V W  L+
Sbjct: 254 AKNGHLDVACQVFRMMPYRND-VTWSALI 281



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 124/286 (43%), Gaps = 40/286 (13%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++++    DV    SL+  Y+  G +  A  VF      + V+W+++I+G+ +NG  +E 
Sbjct: 234 LLRHCMRMDVVTTTSLVSMYAKNGHLDVACQVFRMMPYRNDVTWSALISGFAQNGRAVEA 293

Query: 62  LKLFDKMPQRN---------------------------------DVSWNSILGGLV---- 84
           L LF ++                                      + W  ILG  V    
Sbjct: 294 LDLFRELQADGLQPCSWALVSALLACASVGFLKLGKSIHGFILRRLEWQCILGTAVLDMY 353

Query: 85  -RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
            + GS++ A ++FN++  R LV W  +I+    +G   +ALALF+E+    ++P+ A   
Sbjct: 354 SKCGSLESARKLFNKLSSRDLVLWNAIIACCGTHGCGHDALALFQELNETGIKPDHATFA 413

Query: 144 SLLSACAQLGALDYGN-WVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           SLLSA +  G ++ G  W    I++  I+        ++D+ A+ G ++ A  +  S   
Sbjct: 414 SLLSALSHSGLVEEGKFWFDRMIKEFGIEPAEKHYVCIVDLLARSGLVEEANDMLASMQT 473

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248
           +   A    +    +N   +E  E     K   + P+ I  +A++S
Sbjct: 474 EPTIAIWVILLSGCLNNKKLELGETIAK-KILELRPEDIGVLALVS 518


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/552 (37%), Positives = 323/552 (58%), Gaps = 43/552 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K  +   V+++  LI  Y+ C  + DAR +FDE    +VVSW +MI+ Y + G   E 
Sbjct: 116 MIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMPQKNVVSWTAMISAYSQRGFAFEA 175

Query: 62  LKLFDKMPQRNDVSWN----------------------------------------SILG 81
           L LF +M  R+D   N                                        S+L 
Sbjct: 176 LNLFVEM-LRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLD 234

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G + DA  VF+ +P+R +V+   +ISG+AQ G  +EAL LFR++Q   +  NS  
Sbjct: 235 MYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVT 294

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
             S+L+A + L AL++G  V+S++ +       +L  +LIDMY+KCG++  A ++F S  
Sbjct: 295 YASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMP 354

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG-ISPDSISYIAVLSACSHLGWVEKGF 260
           ++   ++ + + G + +G + E  ELF+ M+ +  + PDSI+Y+AVLS CSH    + G 
Sbjct: 355 ERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGL 414

Query: 261 YYFHSMFD-VHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACR 319
             F++M +   GI+P++ HY C+VDLLGRAG +EEA +FI  MP  P   IWG+LLG+CR
Sbjct: 415 EIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSCR 474

Query: 320 VHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGC 379
           VH + E+G  +G  L+E +  + G Y++LSN+Y    K E+   +R  M+++ + + PG 
Sbjct: 475 VHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPGR 534

Query: 380 SLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETV 439
           S +ELD +VH F A D +H + +E+ +  +E+  K K  GY  +   V++D++EE+KE V
Sbjct: 535 SWVELDQIVHTFHASDHTHPRREEVAKKVKELSIKFKEDGYVPDLSCVLYDVDEEQKEKV 594

Query: 440 IGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHH 499
           +  HSEKLALAFGLI T  G+ IR++KN+RIC DCHS  K VS+++ R + +RD+  +H+
Sbjct: 595 LLGHSEKLALAFGLIATPEGTTIRVIKNLRICVDCHSFAKFVSRLYARTVILRDKNRFHN 654

Query: 500 FEDGSCSCLEYW 511
              G CSC +YW
Sbjct: 655 IVGGVCSCGDYW 666



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 112/277 (40%), Gaps = 39/277 (14%)

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCI 170
           +     +G+ KEAL    +M  L  E       ++L+ C    A+  G  V++++ K C 
Sbjct: 65  LKTLCSSGQLKEALL---QMAILGREVKFEGYDTILNECVSQRAIREGQRVHTHMIKTCY 121

Query: 171 KLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFEN 230
                L   LI +Y KC  +  A ++F     K+V ++T+ I   +  G + EA  LF  
Sbjct: 122 LPSVYLRTRLIVLYNKCDCLGDAREMFDEMPQKNVVSWTAMISAYSQRGFAFEALNLFVE 181

Query: 231 MKSKGISPDSISYIAVLSACSHLGWVEKGFY---------YFHSMF-------------- 267
           M      P+  ++  +L++C      E G           Y   MF              
Sbjct: 182 MLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGR 241

Query: 268 --DVHGI---KPELDHYACMVDLLGRA--GLLEEAENFIASMP---MKPDNVIWGTLLGA 317
             D HG+    PE D  AC   + G A  GL EEA      +    M  ++V + ++L A
Sbjct: 242 ICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTA 301

Query: 318 CRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVE 354
                    G+++ + ++ S Q     Y++L N  ++
Sbjct: 302 LSGLAALNHGKQVHSHVLRSGQY---SYVVLLNSLID 335


>gi|296087599|emb|CBI34855.3| unnamed protein product [Vitis vinifera]
          Length = 956

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/435 (43%), Positives = 271/435 (62%), Gaps = 7/435 (1%)

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEP------ 137
           V F  +D A  VF  +P      W V+I GFA +GR   +L L+ +M    L+P      
Sbjct: 522 VSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDNSGVI 581

Query: 138 -NSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
            N   ++S+L AC  LGAL  G W +SY+ +   + D ++  A++DMY+KCGS+DLA  +
Sbjct: 582 PNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCL 641

Query: 197 FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWV 256
           F     KD+  +++ I    ++GH  +A +LF+ M   G+ P  +++  VLSACSH G +
Sbjct: 642 FDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLL 701

Query: 257 EKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLG 316
           E+G  YF  M +   I  +L +YACMVDLLGRAG L EA + I +MP++PD  IWG+LLG
Sbjct: 702 EEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLG 761

Query: 317 ACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRA 376
           ACR+H N ++ ++I + L   D  H G ++LLSNIY    +    E+VRK M +R   + 
Sbjct: 762 ACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKI 821

Query: 377 PGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEK 436
            G SL+E D  VH+F  GDRSH + +++Y   EE+   +K+ GY   T  V+ DIEEE K
Sbjct: 822 QGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAPMKHLGYVPLTDFVLHDIEEEAK 881

Query: 437 ETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKH 496
           E  + YHSE+LA+AFGLI T PG+ +RI KN+RIC DCH+A+KL+SK+  R I +RD   
Sbjct: 882 EAALSYHSERLAIAFGLINTSPGTTLRITKNLRICGDCHNAIKLISKIVNRVILVRDMHR 941

Query: 497 YHHFEDGSCSCLEYW 511
           +H FEDG CSC +YW
Sbjct: 942 FHRFEDGVCSCGDYW 956



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 155/335 (46%), Gaps = 83/335 (24%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL------- 62
           D+FV ++L++ YS CG++ +A  VF+E    D V W SM+ GY +N +  E L       
Sbjct: 138 DMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMV 197

Query: 63  -----------------------------KLFDKMPQRNDVSWNSILGGLVRFGSVDDAC 93
                                         LF KMP+++ +SW++++       + ++A 
Sbjct: 198 MMDCFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEAL 257

Query: 94  RVFNQMPKR-----------------------------------SLVSWVVLISGFAQNG 118
            +F++M ++                                    +VSWV L+SG+AQNG
Sbjct: 258 NLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKDVVSWVALLSGYAQNG 317

Query: 119 RPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCA 178
              +++ +FR M S  ++P++  +V +L+A ++LG       ++ Y+ +     +  + A
Sbjct: 318 MAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGA 377

Query: 179 ALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKS--KGI 236
           +LI++Y+KCGS+  A+++F     +DV  ++S I    ++G   EA E+F+ M    +GI
Sbjct: 378 SLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMIQVMQGI 437

Query: 237 S--------PDSISYIAVLSA--CSHLGWVEKGFY 261
           +        P     +A+ S    +H+ W  K FY
Sbjct: 438 TSCYQISMQPQVQPPLAITSCTLATHIPWKVKAFY 472



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 99/415 (23%), Positives = 172/415 (41%), Gaps = 83/415 (20%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V K    +D F    L   Y+ C  ++ AR VFDE+   +V  WNS +  Y R  +  E 
Sbjct: 27  VFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREKQWEET 86

Query: 62  LKLFDKM-----------------------------------PQRNDVSWNSILGG--LV 84
           L+LF  M                                    ++ND   + +  G  LV
Sbjct: 87  LRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMFVGSALV 146

Query: 85  RF----GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD-LEPNS 139
                 G + +A +VF +  +   V W  +++G+ QN  P+EALALF +M  +D  + + 
Sbjct: 147 ELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCFDGDL 206

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
            ++ SLL+  A+ G       ++S + +K    D I  + +I  YA   + + A+ +FH 
Sbjct: 207 PLVNSLLNLYAKTGCEKIAANLFSKMPEK----DVISWSTMIACYANNEAANEALNLFHE 262

Query: 200 YGD-----------------------------------KDVSAYTSAIFGLAMNGHSIEA 224
             +                                   KDV ++ + + G A NG + ++
Sbjct: 263 MIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKDVVSWVALLSGYAQNGMAYKS 322

Query: 225 FELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVD 284
             +F NM S GI PD+++ + +L+A S LG  ++     H      G    +   A +++
Sbjct: 323 MGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQAL-CLHGYVVRSGFNSNVFVGASLIE 381

Query: 285 LLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQ 339
           L  + G L +A      M ++ D VIW +++ A  +H        I + +I+  Q
Sbjct: 382 LYSKCGSLGDAVKLFKGMIVR-DVVIWSSMIAAYGIHGRGGEALEIFDQMIQVMQ 435



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 86/164 (52%), Gaps = 12/164 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V++  F +D+ V  +++  YS CG +  AR +FDE+   D+V W++MI  Y  +G   + 
Sbjct: 610 VIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKA 669

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPK-----RSLVSWVVLIS 112
           + LFD+M +     + V++  +L      G +++    F  M +     R L ++  ++ 
Sbjct: 670 IDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVD 729

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALD 156
              + G+  EA+ L   ++++ +EP+++I  SLL AC     LD
Sbjct: 730 LLGRAGQLSEAVDL---IENMPVEPDASIWGSLLGACRIHNNLD 770



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 85/364 (23%), Positives = 140/364 (38%), Gaps = 85/364 (23%)

Query: 41  DVVSWNSMINGYVRNGEILEGLKLFDKM----PQRNDVSWNSIL---------------- 80
           DVVSW ++++GY +NG   + + +F  M     Q + V+   IL                
Sbjct: 302 DVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLH 361

Query: 81  GGLVR-------------------FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
           G +VR                    GS+ DA ++F  M  R +V W  +I+ +  +GR  
Sbjct: 362 GYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGG 421

Query: 122 EALALFREMQSL--------------DLEPNSAILVSLLSACAQ--------------LG 153
           EAL +F +M  +               ++P  AI    L+                  LG
Sbjct: 422 EALEIFDQMIQVMQGITSCYQISMQPQVQPPLAITSCTLATHIPWKVKAFYMRAHFRWLG 481

Query: 154 ---------ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
                         +   S I    ++ DS +      MY     ID A  VF    +  
Sbjct: 482 HFWEIFPTYPFQAADMSKSNIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPC 541

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS-------ISYIAVLSACSHLGWVE 257
              +   I G A +G  + + EL+  M  KG+ PD+       +S ++VL AC +LG + 
Sbjct: 542 SFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDNSGVIPNRVSILSVLLACGNLGALR 601

Query: 258 KGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
           KG  +FHS     G + ++     ++D+  + G L+ A         K D V W  ++ +
Sbjct: 602 KG-EWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGK-DLVCWSAMIAS 659

Query: 318 CRVH 321
             +H
Sbjct: 660 YGIH 663



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 65/303 (21%), Positives = 119/303 (39%), Gaps = 89/303 (29%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVC----GRVRDARWVFDESDDLDVVSWNSMINGYVRNG 56
           M   N FAY +   + ++  +++      R+  A  VF++  +     WN MI G+  +G
Sbjct: 497 MSKSNIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDG 556

Query: 57  EILEGLKLFDKMPQR-----------NDVSWNSI------LGGL---------------- 83
             L  L+L+ KM ++           N VS  S+      LG L                
Sbjct: 557 RFLSSLELYSKMMEKGLKPDNSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFE 616

Query: 84  -------------VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM 130
                         + GS+D A  +F++   + LV W  +I+ +  +G  ++A+ LF +M
Sbjct: 617 FDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQM 676

Query: 131 QSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCI---KLDSILCAALIDMYAKC 187
               + P+      +LSAC+  G L+ G   +  + ++ +   KL +  C  ++D+  + 
Sbjct: 677 VKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYAC--MVDLLGRA 734

Query: 188 GSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVL 247
           G +                                EA +L ENM    + PD+  + ++L
Sbjct: 735 GQLS-------------------------------EAVDLIENMP---VEPDASIWGSLL 760

Query: 248 SAC 250
            AC
Sbjct: 761 GAC 763



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 94/226 (41%), Gaps = 23/226 (10%)

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
           +LV L  AC    ++     ++S + K  I  D+     L  +YAKC S+  A +VF   
Sbjct: 6   VLVDLFQACNNGRSVSQ---LHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDET 62

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMK-SKGISPDSISYIAVLSACSHLGWVEKG 259
              +V  + S +          E   LF  M  + G +PD+ +    L AC+ L  +E G
Sbjct: 63  PHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELG 122

Query: 260 FYYFHSMFDVHGIKPELDHY-------ACMVDLLGRAGLLEEAENFIASMPMKPDNVIWG 312
                    +HG   + D         + +V+L  + G + EA         +PD V+W 
Sbjct: 123 KV-------IHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEF-QRPDTVLWT 174

Query: 313 TLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYIL---LSNIYVET 355
           +++   + + + E    + + ++  D   DG   L   L N+Y +T
Sbjct: 175 SMVTGYQQNNDPEEALALFSQMVMMD-CFDGDLPLVNSLLNLYAKT 219


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 195/551 (35%), Positives = 319/551 (57%), Gaps = 42/551 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFD--ESDDLDVVSWNSMINGYVRNGEIL 59
           V +  F  DVFV+N LI  Y+ C R+  AR VF+     +  +VSW ++++ Y +NGE +
Sbjct: 145 VFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPV 204

Query: 60  EGLKLFDKMPQRND----VSWNSILGGLV------------------------------- 84
           E L++F +M + +     V+  S+L                                   
Sbjct: 205 EALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLISLN 264

Query: 85  ----RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
               + G V  A  +F++M   +L+ W  +ISG+A+NG  K+A+ LF EM + D+ P++ 
Sbjct: 265 TMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTI 324

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
            + S +SACAQ+G+L+   W+  Y+ +   + D  + +ALIDM+AKCGS++ A  VF   
Sbjct: 325 SITSAISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRT 384

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
            D+DV  +++ I G  ++G + EA  L+  M+  G+ P+ ++++ +L AC+H G V +G+
Sbjct: 385 LDRDVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGW 444

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
           ++F+ M D H I P+  HYAC++DLLGRAG L++A   I  MP++P   +WG LL AC+ 
Sbjct: 445 WFFNRMAD-HKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKK 503

Query: 321 HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS 380
           HR+ E+G+     L   D ++ G Y+ LSN+Y      +   EVR  M+++ + +  GCS
Sbjct: 504 HRHVELGKYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCS 563

Query: 381 LIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVI 440
            +E+ G +  F  GD+SH + +EI +  E I  ++K  G+     + + D+ +EE E  +
Sbjct: 564 WVEVRGRLEGFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETL 623

Query: 441 GYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF 500
             HSE++ +A+GLI T  G+ +RI KN+R C +CH+A KL+SK+  R+I +RD   +HHF
Sbjct: 624 CSHSERITIAYGLISTPQGTTLRITKNLRACVNCHAATKLISKLVGREIVVRDTNRFHHF 683

Query: 501 EDGSCSCLEYW 511
           +DG CSC +YW
Sbjct: 684 KDGVCSCGDYW 694



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 169/355 (47%), Gaps = 45/355 (12%)

Query: 12  FVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQR 71
           F+   LI   S  G +  AR VFD+     V  WN++I GY RN    + L ++ KM Q 
Sbjct: 54  FLITKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKM-QL 112

Query: 72  NDVSWNSIL--------GGL-------------VRFGSVDDA------------CR---- 94
             VS +S          GGL              R G   D             CR    
Sbjct: 113 ARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGC 172

Query: 95  ---VFN--QMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
              VF    +P+R++VSW  ++S +AQNG P EAL +F +M+ +D++P+   LVS+L+A 
Sbjct: 173 ARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAF 232

Query: 150 AQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYT 209
             L  L+ G  +++ + K  ++ +  L  +L  MYAKCG +  A  +F      ++  + 
Sbjct: 233 TCLQDLEQGRSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWN 292

Query: 210 SAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDV 269
           + I G A NG + +A +LF  M +K + PD+IS  + +SAC+ +G +E+   +       
Sbjct: 293 AMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAISACAQVGSLEQA-RWMDEYVSR 351

Query: 270 HGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
              + ++   + ++D+  + G +E A + +    +  D V+W  ++    +H  A
Sbjct: 352 SDYRDDVFISSALIDMFAKCGSVECARS-VFDRTLDRDVVVWSAMIVGYGLHGQA 405



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/149 (22%), Positives = 64/149 (42%), Gaps = 2/149 (1%)

Query: 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFE 229
           ++    L   LI   +  G I  A QVF       V  + + I G + N H  +A  ++ 
Sbjct: 49  LQFSGFLITKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYS 108

Query: 230 NMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRA 289
            M+   +SPDS ++  +L AC  L  ++ G +    +F + G + ++     ++ L  + 
Sbjct: 109 KMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRL-GFEADVFVQNGLIALYAKC 167

Query: 290 GLLEEAENFIASMPMKPDNVI-WGTLLGA 317
             L  A      +P+    ++ W  ++ A
Sbjct: 168 RRLGCARTVFEGLPLPERTIVSWTAIVSA 196


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/470 (39%), Positives = 289/470 (61%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DVF   +++  Y+  G + +AR VFD   + + VSWN+M+  Y++   + E  +LF+ MP
Sbjct: 254 DVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMP 313

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE 129
            RN  SWN++L G  + G +++A  VF+ MP++  VSW  +++ ++Q G  +E L LF E
Sbjct: 314 CRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIE 373

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
           M       N +    +LS CA + AL+ G  ++  + +    +   +  AL+ MY KCG+
Sbjct: 374 MGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGN 433

Query: 190 IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
           ++ A   F    ++DV ++ + I G A +G   EA E+F+ M++    PD I+ + VL+A
Sbjct: 434 MEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAA 493

Query: 250 CSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNV 309
           CSH G VEKG  YF+SM    G+  + +HY CM+DLLGRAG L EA + +  MP +PD+ 
Sbjct: 494 CSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDST 553

Query: 310 IWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMR 369
           +WG LLGA R+HRN E+G+     + E +  + G Y+LLSNIY  + K  +A ++R  M 
Sbjct: 554 MWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMME 613

Query: 370 KRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMF 429
           +R +K+ PG S IE+   VH F AGD  H + ++IY F E++  ++K  GY   T  V+ 
Sbjct: 614 ERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLH 673

Query: 430 DIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMK 479
           D+EEEEKE ++ YHSEKLA+A+G++   PG  IR++KN+R+C DCH+A K
Sbjct: 674 DVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFK 723



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 167/334 (50%), Gaps = 12/334 (3%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D    N ++  Y   GRV +AR +F+   + DV+SWN++++GYV+ G++ E  +LFD+MP
Sbjct: 161 DAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMP 220

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE 129
            R+ VSWN ++ G  R G + +A R+F+  P R + +W  ++SG+AQNG  +EA  +F  
Sbjct: 221 GRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDA 280

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
           M     E N+    ++++A  Q   +D    +++ +   C  + S     ++  YA+ G 
Sbjct: 281 MP----ERNAVSWNAMVAAYIQRRMMDEAKELFNMM--PCRNVAS--WNTMLTGYAQAGM 332

Query: 190 IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
           ++ A  VF +   KD  ++ + +   +  G S E  +LF  M   G   +  ++  VLS 
Sbjct: 333 LEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLST 392

Query: 250 CSHLGWVEKGFYYFHSMFDV-HGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDN 308
           C+ +  +E G      +    +G+   + +   ++ +  + G +E+A N    M  + D 
Sbjct: 393 CADIAALECGMQLHGRLIRAGYGVGCFVGN--ALLAMYFKCGNMEDARNAFEEMEER-DV 449

Query: 309 VIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD 342
           V W T++     H   +    I +M+  +    D
Sbjct: 450 VSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPD 483



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 144/266 (54%), Gaps = 17/266 (6%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           M V++S  Y+V     +I  ++  G V  AR  FD + + D VSWN M+  YVRNG + E
Sbjct: 126 MPVRDSVTYNV-----MISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEE 180

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
              LF+   + + +SWN+++ G V++G + +A  +F++MP R +VSW +++SG+A+ G  
Sbjct: 181 ARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDM 240

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
            EA  LF      D+   +A+    +S  AQ G L+    V+  + ++    +++   A+
Sbjct: 241 VEARRLFDAAPVRDVFTWTAV----VSGYAQNGMLEEARRVFDAMPER----NAVSWNAM 292

Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           +  Y +   +D A ++F+    ++V+++ + + G A  G   EA  +F+ M  K    D+
Sbjct: 293 VAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQK----DA 348

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSM 266
           +S+ A+L+A S  G  E+    F  M
Sbjct: 349 VSWAAMLAAYSQGGCSEETLQLFIEM 374



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 141/310 (45%), Gaps = 53/310 (17%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D +  N+L+   +V   + DAR +FDE    D V++N MI+ +  +G +      FD  P
Sbjct: 99  DNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAP 158

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE 129
           +++ VSWN +L   VR G V++A  +FN   +  ++SW  L+SG+ Q G+  EA  LF  
Sbjct: 159 EKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDR 218

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
           M   D+                                       +    ++  YA+ G 
Sbjct: 219 MPGRDV---------------------------------------VSWNIMVSGYARRGD 239

Query: 190 IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
           +  A ++F +   +DV  +T+ + G A NG   EA  +F+ M  +    +++S+ A+++A
Sbjct: 240 MVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER----NAVSWNAMVAA 295

Query: 250 CSHLGWVEKGFYYFHSMFDVHGIKP--ELDHYACMVDLLGRAGLLEEAENFIASMPMKPD 307
                 +++    F+ M       P   +  +  M+    +AG+LEEA+    +MP K D
Sbjct: 296 YIQRRMMDEAKELFNMM-------PCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQK-D 347

Query: 308 NVIWGTLLGA 317
            V W  +L A
Sbjct: 348 AVSWAAMLAA 357



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 12/156 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++  +    FV N+L+  Y  CG + DAR  F+E ++ DVVSWN+MI GY R+G   E 
Sbjct: 409 LIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEA 468

Query: 62  LKLFDKM----PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLIS 112
           L++FD M     + +D++   +L      G V+     F  M     V+     +  +I 
Sbjct: 469 LEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMID 528

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148
              + GR  EA  L ++M     EP+S +  +LL A
Sbjct: 529 LLGRAGRLAEAHDLMKDMP---FEPDSTMWGALLGA 561


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 208/555 (37%), Positives = 324/555 (58%), Gaps = 44/555 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNG---- 56
           + VK+    DV V NSL+  YS  G    AR VF++   LD++SWNSMI+   ++     
Sbjct: 311 IAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEE 370

Query: 57  ------EIL-EGLK----------------------LFDKMPQ----------RNDVSWN 77
                 ++L EGLK                      L D+  Q           +D+  N
Sbjct: 371 SVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVN 430

Query: 78  S-ILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136
           S IL   ++ G + +A  VFN +     V+W  +ISG   NG   +AL ++  M+   + 
Sbjct: 431 SGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVM 490

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
           P+     +L+ A + + AL+ G  +++ + K     D  +  +L+DMYAKCG+I+ A ++
Sbjct: 491 PDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRL 550

Query: 197 FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWV 256
           F     ++++ + + + GLA +G++ EA  LF++MKS GI PD +S+I +LSACSH G  
Sbjct: 551 FKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLT 610

Query: 257 EKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLG 316
            + + Y HSM + +GI+PE++HY+C+VD LGRAGL++EA+  I +MP K    I   LLG
Sbjct: 611 SEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLG 670

Query: 317 ACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRA 376
           ACR+  + E G+R+   L   +      Y+LLSNIY    + ++  + RK M+++ +K+ 
Sbjct: 671 ACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKD 730

Query: 377 PGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEK 436
           PG S I++  ++H F+  DRSH +   IY   EE++K I+  GY  +T  V+ D+E+EEK
Sbjct: 731 PGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEEK 790

Query: 437 ETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKH 496
           E  + YHSEKLA+A+GLI T   + IR++KN+R+C DCH+A+K +SKVF+R+I +RD   
Sbjct: 791 ERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFEREIVLRDANR 850

Query: 497 YHHFEDGSCSCLEYW 511
           +HHF DG CSC +YW
Sbjct: 851 FHHFRDGVCSCGDYW 865



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 166/369 (44%), Gaps = 48/369 (13%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +K    +DVFV  +L+  YS CGR+RDAR +FD   + DVV WN M+ GYV+ G   E  
Sbjct: 210 IKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAF 269

Query: 63  KLFDKMPQR----------------------------------------NDVS-WNSILG 81
           +LF +  +                                         +DVS  NS++ 
Sbjct: 270 QLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVN 329

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPN--- 138
              + G    A  VFN M    L+SW  +IS  AQ+   +E++ LF ++    L+P+   
Sbjct: 330 MYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFT 389

Query: 139 --SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
             S  L +   AC  L  LD G  ++++  K     D  + + ++DMY KCG +  A  V
Sbjct: 390 LASITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIV 449

Query: 197 FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWV 256
           F+     D  A+TS I G   NG+  +A  ++  M+   + PD  ++  ++ A S +  +
Sbjct: 450 FNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTAL 509

Query: 257 EKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLG 316
           E+G     ++  +  +       + +VD+  + G +E+A      M ++ +  +W  +L 
Sbjct: 510 EQGRQLHANVIKLDCVSDPFVGTS-LVDMYAKCGNIEDAYRLFKKMNVR-NIALWNAMLV 567

Query: 317 ACRVHRNAE 325
               H NAE
Sbjct: 568 GLAQHGNAE 576



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 99/390 (25%), Positives = 174/390 (44%), Gaps = 59/390 (15%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYV-----RNG 56
           +V +  A D F+ N+L+  YS CG +  AR VFD + + D+V+WN+++  Y       +G
Sbjct: 103 IVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDG 162

Query: 57  EILEGLKLFD------------------KMPQRNDVSWNS-----------------ILG 81
              EGL LF                   K+   +   W +                 + G
Sbjct: 163 NAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSG 222

Query: 82  GLV----RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEP 137
            LV    + G + DA  +F+ M +R +V W +++ G+ Q G  KEA  LF E     L P
Sbjct: 223 ALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRP 282

Query: 138 NSAILVSLLSACAQLGA--LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ 195
           +   +  +L+ C   G   L+ G  V+    K  +  D  +  +L++MY+K G    A +
Sbjct: 283 DEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFARE 342

Query: 196 VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD-----SISYIAVLSAC 250
           VF+     D+ ++ S I   A +    E+  LF ++  +G+ PD     SI+      AC
Sbjct: 343 VFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKAC 402

Query: 251 SHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAE---NFIASMPMKPD 307
             L  +++G    H+     G   +L   + ++D+  + G +  A    N+I++    PD
Sbjct: 403 GCLVLLDQG-KQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISA----PD 457

Query: 308 NVIWGTLLGACRVHRNAEMGQRIGNMLIES 337
           +V W +++  C  + N +   RI + + +S
Sbjct: 458 DVAWTSMISGCVDNGNEDQALRIYHRMRQS 487


>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
          Length = 662

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/535 (37%), Positives = 304/535 (56%), Gaps = 33/535 (6%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D    N+L+  +   G    AR +F      DVVSWN+M++G  ++G + E   +F  MP
Sbjct: 128 DAVSYNTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMP 187

Query: 70  QRNDVSWNSILGGL--------------------------------VRFGSVDDACRVFN 97
            RN VSWN+++ G                                 +  G+V  A   F 
Sbjct: 188 VRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFE 247

Query: 98  QMPKRSLVSWVVLISGFAQNGRPKEALALFREM-QSLDLEPNSAILVSLLSACAQLGALD 156
            MP R+LVSW  +++G+ +N    +AL LFR M +  +++PN++ L S+L  C+ L AL 
Sbjct: 248 AMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALG 307

Query: 157 YGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLA 216
           +G  ++ +  K  +  +  +  +L+ MY KCG +  A ++F     +DV A+ + I G A
Sbjct: 308 FGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYA 367

Query: 217 MNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPEL 276
            +G   EA  LFE MK +G+ P+ I+++AVL+AC H G  + G   F  M +++GI+P +
Sbjct: 368 QHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRV 427

Query: 277 DHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIE 336
           DHY+CMVDLL RAG LE A + I SMP +P    +GTLL ACRV++N E  +     LIE
Sbjct: 428 DHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIE 487

Query: 337 SDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDR 396
            D    G Y+ L+NIY    + ++   VR+ M+   + + PG S IE+ GV+HEF + DR
Sbjct: 488 KDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRSNDR 547

Query: 397 SHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICT 456
            H +   I++   ++ +++K  GY  +   V+ D++E  K  ++  HSEKLA++FGLI T
Sbjct: 548 LHPQLYLIHEKLGQLAERMKAMGYVPDLDFVLHDVDETLKVQMLMRHSEKLAISFGLIST 607

Query: 457 KPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            PG  +RI KN+R+C DCH+A K++SK+  R+I +RD   +HHF  G CSC +YW
Sbjct: 608 APGMTLRIFKNLRVCGDCHNAAKVISKIEDREIILRDTTRFHHFRGGHCSCGDYW 662



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 120/241 (49%), Gaps = 40/241 (16%)

Query: 15  NSLIQFYS-VCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRND 73
           N L+  Y+   GR+ DAR +FD     D VS+N++++ +  +G+     +LF  MP R+ 
Sbjct: 101 NCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVRDV 160

Query: 74  VSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL 133
           VSWN+++ GL + G+V++A  VF  MP R+ VSW  ++SGFA +          R+M + 
Sbjct: 161 VSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACS----------RDMSAA 210

Query: 134 DLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLA 193
           +                         W  +  +K     D++L  A++  Y   G++  A
Sbjct: 211 E------------------------EWFRNAPEKG----DAVLWTAMVSGYMDIGNVVKA 242

Query: 194 MQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM-KSKGISPDSISYIAVLSACSH 252
           ++ F +   +++ ++ + + G   N H+ +A  LF  M +   + P++ +  +VL  CS+
Sbjct: 243 IEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSN 302

Query: 253 L 253
           L
Sbjct: 303 L 303



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 82/165 (49%), Gaps = 12/165 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +K   + ++ V  SL+  Y  CG +  A  +F E    DVV+WN+MI+GY ++G+  E +
Sbjct: 317 MKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAI 376

Query: 63  KLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMP-----KRSLVSWVVLISG 113
            LF++M     + N +++ ++L   +  G  D   R F  M      +  +  +  ++  
Sbjct: 377 NLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDL 436

Query: 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
             + G+ + A+ L R   S+  EP+ +   +LL+AC     L++ 
Sbjct: 437 LCRAGKLERAVDLIR---SMPFEPHPSAYGTLLAACRVYKNLEFA 478



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 87/188 (46%), Gaps = 12/188 (6%)

Query: 80  LGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQN-GRPKEALALFREMQSLDLEPN 138
           +   VR G +  A   F   P+++  ++  L++G+A+  GR  +A  LF  + +    P+
Sbjct: 73  VAAAVRRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPT----PD 128

Query: 139 SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH 198
           +    +LLS     G  D    +++ +  +    D +    ++   +K G+++ A  VF 
Sbjct: 129 AVSYNTLLSCHFASGDADGARRLFASMPVR----DVVSWNTMVSGLSKSGAVEEAKAVFL 184

Query: 199 SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEK 258
           +   ++  ++ + + G A +     A E F N   KG   D++ + A++S    +G V K
Sbjct: 185 AMPVRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKG---DAVLWTAMVSGYMDIGNVVK 241

Query: 259 GFYYFHSM 266
              YF +M
Sbjct: 242 AIEYFEAM 249


>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 613

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/535 (37%), Positives = 304/535 (56%), Gaps = 33/535 (6%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D    N+L+  +   G    AR +F      DVVSWN+M++G  ++G + E   +F  MP
Sbjct: 79  DAVSYNTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMP 138

Query: 70  QRNDVSWNSILGGL--------------------------------VRFGSVDDACRVFN 97
            RN VSWN+++ G                                 +  G+V  A   F 
Sbjct: 139 VRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFE 198

Query: 98  QMPKRSLVSWVVLISGFAQNGRPKEALALFREM-QSLDLEPNSAILVSLLSACAQLGALD 156
            MP R+LVSW  +++G+ +N    +AL LFR M +  +++PN++ L S+L  C+ L AL 
Sbjct: 199 AMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALG 258

Query: 157 YGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLA 216
           +G  ++ +  K  +  +  +  +L+ MY KCG +  A ++F     +DV A+ + I G A
Sbjct: 259 FGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYA 318

Query: 217 MNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPEL 276
            +G   EA  LFE MK +G+ P+ I+++AVL+AC H G  + G   F  M +++GI+P +
Sbjct: 319 QHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRV 378

Query: 277 DHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIE 336
           DHY+CMVDLL RAG LE A + I SMP +P    +GTLL ACRV++N E  +     LIE
Sbjct: 379 DHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIE 438

Query: 337 SDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDR 396
            D    G Y+ L+NIY    + ++   VR+ M+   + + PG S IE+ GV+HEF + DR
Sbjct: 439 KDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRSNDR 498

Query: 397 SHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICT 456
            H +   I++   ++ +++K  GY  +   V+ D++E  K  ++  HSEKLA++FGLI T
Sbjct: 499 LHPQLYLIHEKLGQLAERMKAMGYVPDLDFVLHDVDETLKVQMLMRHSEKLAISFGLIST 558

Query: 457 KPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            PG  +RI KN+R+C DCH+A K++SK+  R+I +RD   +HHF  G CSC +YW
Sbjct: 559 APGMTLRIFKNLRVCGDCHNAAKVISKIEDREIILRDTTRFHHFRGGHCSCGDYW 613



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 120/241 (49%), Gaps = 40/241 (16%)

Query: 15  NSLIQFYS-VCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRND 73
           N L+  Y+   GR+ DAR +FD     D VS+N++++ +  +G+     +LF  MP R+ 
Sbjct: 52  NCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVRDV 111

Query: 74  VSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL 133
           VSWN+++ GL + G+V++A  VF  MP R+ VSW  ++SGFA +          R+M + 
Sbjct: 112 VSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACS----------RDMSAA 161

Query: 134 DLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLA 193
           +                         W  +  +K     D++L  A++  Y   G++  A
Sbjct: 162 E------------------------EWFRNAPEKG----DAVLWTAMVSGYMDIGNVVKA 193

Query: 194 MQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM-KSKGISPDSISYIAVLSACSH 252
           ++ F +   +++ ++ + + G   N H+ +A  LF  M +   + P++ +  +VL  CS+
Sbjct: 194 IEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSN 253

Query: 253 L 253
           L
Sbjct: 254 L 254



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 82/165 (49%), Gaps = 12/165 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +K   + ++ V  SL+  Y  CG +  A  +F E    DVV+WN+MI+GY ++G+  E +
Sbjct: 268 MKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAI 327

Query: 63  KLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLISG 113
            LF++M     + N +++ ++L   +  G  D   R F  M +   +      +  ++  
Sbjct: 328 NLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDL 387

Query: 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
             + G+ + A+ L R   S+  EP+ +   +LL+AC     L++ 
Sbjct: 388 LCRAGKLERAVDLIR---SMPFEPHPSAYGTLLAACRVYKNLEFA 429



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 87/188 (46%), Gaps = 12/188 (6%)

Query: 80  LGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQN-GRPKEALALFREMQSLDLEPN 138
           +   VR G +  A   F   P+++  ++  L++G+A+  GR  +A  LF  + +    P+
Sbjct: 24  VAAAVRRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPT----PD 79

Query: 139 SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH 198
           +    +LLS     G  D    +++ +  +    D +    ++   +K G+++ A  VF 
Sbjct: 80  AVSYNTLLSCHFASGDADGARRLFASMPVR----DVVSWNTMVSGLSKSGAVEEAKAVFL 135

Query: 199 SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEK 258
           +   ++  ++ + + G A +     A E F N   KG   D++ + A++S    +G V K
Sbjct: 136 AMPVRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKG---DAVLWTAMVSGYMDIGNVVK 192

Query: 259 GFYYFHSM 266
              YF +M
Sbjct: 193 AIEYFEAM 200


>gi|297745917|emb|CBI15973.3| unnamed protein product [Vitis vinifera]
          Length = 652

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 213/546 (39%), Positives = 297/546 (54%), Gaps = 89/546 (16%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           MV+K     DVF+ NSLI FY+ CG +     VF      DVVSWNSMI  +V+ G   E
Sbjct: 161 MVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEE 220

Query: 61  GL--------------------------------KLFDKMPQRNDVSWNSILGGLVRFGS 88
            L                                +LFDKMP+++ VSW ++L G  + G 
Sbjct: 221 ALELFQEMETQNSLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGE 280

Query: 89  VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQ-SLDLEPNSAILVSLLS 147
            D A  +F+ MP + + +W  LIS + Q G+PKEAL LF E+Q S   +P+   L     
Sbjct: 281 YDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTL----- 335

Query: 148 ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSA 207
                              K+ +KL+  L  +LIDMY KCG +  A+ VFHS   KDV  
Sbjct: 336 -------------------KQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFV 376

Query: 208 YTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMF 267
           +++ I GLAM+GH  +A  LF  M+   + P+++++  +L ACSH+G VE+G  +F+ M 
Sbjct: 377 WSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQME 436

Query: 268 DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMG 327
            V+G                              MPM P   +WG LLGAC +H N  + 
Sbjct: 437 LVYG-----------------------------KMPMAPAASVWGALLGACTIHENVVLA 467

Query: 328 QRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGV 387
           ++  + LIE +  + G Y+LLSNIY +  K +    +RK MR   +K+ PGCS IE+DG+
Sbjct: 468 EQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGI 527

Query: 388 VHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEE--KETVIGYHSE 445
           VHEFL GD SH   ++IY   +EIV +++  GY V  +S +  + EEE  KE  +  HSE
Sbjct: 528 VHEFLVGDNSHPSAKKIYAKLDEIVARLETIGY-VPNKSHLLQLVEEEDVKEQALFLHSE 586

Query: 446 KLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSC 505
           KLA+AFGLI T     IRIVKN+R+C DCHS  KLVSK++ R+I +RDR  +HHF +G C
Sbjct: 587 KLAIAFGLISTGQSQPIRIVKNLRVCGDCHSVAKLVSKLYDREILLRDRYRFHHFREGHC 646

Query: 506 SCLEYW 511
           SC++YW
Sbjct: 647 SCMDYW 652



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 112/241 (46%), Gaps = 16/241 (6%)

Query: 81  GGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM--QSLDLEPN 138
             L  F S+D A +VF+Q+P  +L +W  LI  +A +  P ++L +F  M  QS D  P+
Sbjct: 77  AALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDF-PD 135

Query: 139 SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH 198
                 L+ A ++L  L  G   +  + K  +  D  +  +LI  YAKCG + L  +VF 
Sbjct: 136 KFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFV 195

Query: 199 SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEK 258
           +   +DV ++ S I      G   EA ELF+ M+++     S + + + + C   G VE 
Sbjct: 196 NIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNSLTLSNAMLDMYTKC---GSVED 252

Query: 259 GFYYFHSMFDVHGIKPELDHYACMVDLLGRA--GLLEEAENFIASMPMKPDNVIWGTLLG 316
               F  M       PE D  +    L+G A  G  + A+    +MP + D   W  L+ 
Sbjct: 253 AKRLFDKM-------PEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQ-DIAAWNALIS 304

Query: 317 A 317
           A
Sbjct: 305 A 305


>gi|356546233|ref|XP_003541534.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 180/423 (42%), Positives = 284/423 (67%), Gaps = 5/423 (1%)

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           A +VF++MP+RS+V+W  +ISG+ QNG   EA+ +F +M+   +EP+SA  VS+LSAC+Q
Sbjct: 162 ARKVFDEMPQRSIVAWNSMISGYEQNGLANEAVEVFNKMRESRVEPDSATFVSVLSACSQ 221

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSA 211
           LG+LD+G W++  I    I ++ +L  +L++M+++CG +  A  VF+S  + +V  +T+ 
Sbjct: 222 LGSLDFGCWLHDCIVGSGITMNVVLATSLVNMFSRCGDVGRARAVFYSMIEGNVVLWTAM 281

Query: 212 IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG 271
           I G  M+G+ +EA E+F  MK++G+ P+S++++AVLSAC+H G +++G   F SM   +G
Sbjct: 282 ISGYGMHGYGVEAMEVFHRMKARGVVPNSVTFVAVLSACAHAGLIDEGRSVFASMKQEYG 341

Query: 272 IKPELDHYACMVDLLGRAGLLEEAENFIASM---PMKPDNVIWGTLLGACRVHRNAEMGQ 328
           + P ++H+ CMVD+ GR GLL EA  F+  +    + P   +W  +LGAC++H+N ++G 
Sbjct: 342 VVPGVEHHVCMVDMFGRGGLLNEAYQFVKGLNSDELVP--AVWTAMLGACKMHKNFDLGV 399

Query: 329 RIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVV 388
            +   LI ++  + G Y+LLSN+Y    + +  E VR  M +R +K+  G S I++D   
Sbjct: 400 EVAENLINAEPENPGHYVLLSNMYALAGRMDRVESVRNVMIQRGLKKQVGYSTIDVDNRS 459

Query: 389 HEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLA 448
           + F  GD+SH +T EIY F +E++ + K+ GY     S M ++E EE+E  + YHSEKLA
Sbjct: 460 YLFSMGDKSHPETNEIYCFLDELIWRCKDAGYAPVPESAMHELEGEEREYALRYHSEKLA 519

Query: 449 LAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCL 508
           +AFGL+ T  G  +RIVKN+RIC DCHSA+K +S V  R+I +RD+  +HHF +GSCSC 
Sbjct: 520 VAFGLMKTGDGVTLRIVKNLRICEDCHSAIKFISAVMNREIIVRDKLRFHHFREGSCSCS 579

Query: 509 EYW 511
           +YW
Sbjct: 580 DYW 582



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 125/256 (48%), Gaps = 45/256 (17%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V  + +A D FV+ +LI FY+     R AR VFDE     +V+WNSMI+GY +NG   E 
Sbjct: 134 VFVSGYASDSFVQAALIAFYAKSCTPRVARKVFDEMPQRSIVAWNSMISGYEQNGLANEA 193

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDAC------------------------ 93
           +++F+KM +     +  ++ S+L    + GS+D  C                        
Sbjct: 194 VEVFNKMRESRVEPDSATFVSVLSACSQLGSLDFGCWLHDCIVGSGITMNVVLATSLVNM 253

Query: 94  -----------RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
                       VF  M + ++V W  +ISG+  +G   EA+ +F  M++  + PNS   
Sbjct: 254 FSRCGDVGRARAVFYSMIEGNVVLWTAMISGYGMHGYGVEAMEVFHRMKARGVVPNSVTF 313

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI---LCAALIDMYAKCGSIDLAMQVFHS 199
           V++LSACA  G +D G  V++ ++++   +  +   +C  ++DM+ + G ++ A Q    
Sbjct: 314 VAVLSACAHAGLIDEGRSVFASMKQEYGVVPGVEHHVC--MVDMFGRGGLLNEAYQFVKG 371

Query: 200 Y-GDKDVSAYTSAIFG 214
              D+ V A  +A+ G
Sbjct: 372 LNSDELVPAVWTAMLG 387



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 114/235 (48%), Gaps = 2/235 (0%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           GS+    R+F  +       +  LI   ++ G   +A+  +R M    + P++    S++
Sbjct: 56  GSIAYTRRLFRSVSDPDSFLFNSLIKASSKFGFSLDAVLFYRRMLLSRIVPSTYTFTSVI 115

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
            ACA L  L  G  V+S++       DS + AALI  YAK  +  +A +VF     + + 
Sbjct: 116 KACADLSLLCIGTLVHSHVFVSGYASDSFVQAALIAFYAKSCTPRVARKVFDEMPQRSIV 175

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
           A+ S I G   NG + EA E+F  M+   + PDS ++++VLSACS LG ++ G  + H  
Sbjct: 176 AWNSMISGYEQNGLANEAVEVFNKMRESRVEPDSATFVSVLSACSQLGSLDFGC-WLHDC 234

Query: 267 FDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
               GI   +     +V++  R G +  A     SM ++ + V+W  ++    +H
Sbjct: 235 IVGSGITMNVVLATSLVNMFSRCGDVGRARAVFYSM-IEGNVVLWTAMISGYGMH 288



 Score = 39.3 bits (90), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 65/167 (38%), Gaps = 2/167 (1%)

Query: 176 LCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG 235
           L   L+ +    GSI    ++F S  D D   + S I   +  G S++A   +  M    
Sbjct: 44  LLTKLLTLSCAAGSIAYTRRLFRSVSDPDSFLFNSLIKASSKFGFSLDAVLFYRRMLLSR 103

Query: 236 ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA 295
           I P + ++ +V+ AC+ L  +  G    HS   V G   +    A ++    ++     A
Sbjct: 104 IVPSTYTFTSVIKACADLSLLCIG-TLVHSHVFVSGYASDSFVQAALIAFYAKSCTPRVA 162

Query: 296 ENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD 342
                 MP +   V W +++     +  A     + N + ES    D
Sbjct: 163 RKVFDEMPQR-SIVAWNSMISGYEQNGLANEAVEVFNKMRESRVEPD 208


>gi|242047514|ref|XP_002461503.1| hypothetical protein SORBIDRAFT_02g003670 [Sorghum bicolor]
 gi|241924880|gb|EER98024.1| hypothetical protein SORBIDRAFT_02g003670 [Sorghum bicolor]
          Length = 786

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/494 (41%), Positives = 298/494 (60%), Gaps = 32/494 (6%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + VK   A D++V+N+LI FY VCG V   R                             
Sbjct: 155 LAVKAGAAGDLYVRNALIHFYGVCGDVAAMR----------------------------- 185

Query: 61  GLKLFDKMPQ-RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGR 119
             K+FD++P  R+ V+WN++L G VR G V  A  VF+ MP R  VSW  ++ G+ + G 
Sbjct: 186 --KVFDELPLVRDVVTWNAVLAGYVRAGMVGVAREVFDGMPMRDEVSWSTVVGGYVKEGE 243

Query: 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
            + AL +F+ M    ++ N A +V+ LSA AQLG L+ G +V+  I++  + +   L AA
Sbjct: 244 LEVALGVFKNMVVQGVKANEAAIVTALSAAAQLGLLEQGKFVHEVIKRAGVAMSMNLGAA 303

Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
           L+DMY+KCGS+  A +VF +   +DV A+ S I GLA +G   +A +LFE   S+G  P 
Sbjct: 304 LVDMYSKCGSVAAAKEVFDAMPWRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPT 363

Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI 299
           +I+++ VL+ACS  G V++G +YF  M + +GI+ E++HY CMVDLL RAGL++EA   I
Sbjct: 364 NITFVGVLNACSRTGLVDEGRWYFKLMAEKYGIESEMEHYGCMVDLLSRAGLVQEAIELI 423

Query: 300 ASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGE 359
             M + PD V+WGT+L AC+ H   ++G  +GN LIE D  HDG Y+LL++IY +  K +
Sbjct: 424 EGMHIPPDPVLWGTVLSACKRHGLVDLGITVGNKLIELDPAHDGYYVLLASIYAKAKKWD 483

Query: 360 NAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYG 419
              +VRK M  R   ++ G SL+E  G+VH+FL GD  H+ + +IY     I +++   G
Sbjct: 484 EVRKVRKLMSNRGTSKSAGWSLMEAHGIVHKFLVGDMDHKDSVQIYNMLCMIDRRLAEAG 543

Query: 420 YNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMK 479
           Y  +  SV+ DI +EEK   I  HSE+LA+A+G I  + GS IRIVKN+ +C DCH   K
Sbjct: 544 YVPDVSSVLHDIGDEEKVHAIKVHSERLAIAYGFIVVEAGSPIRIVKNLSVCGDCHEFSK 603

Query: 480 LVSKVFKRKISIRD 493
           +V+KVF R+I +RD
Sbjct: 604 MVTKVFGREIIVRD 617


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/552 (37%), Positives = 322/552 (58%), Gaps = 43/552 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K  +   V+++  LI  Y+ C  + DAR +FDE    +VVSW +MI+ Y + G   E 
Sbjct: 88  MIKTCYLPSVYLRTRLIVLYNKCDCLGDARGMFDEMPQRNVVSWTAMISAYSQRGFAFEA 147

Query: 62  LKLFDKMPQRNDVSWN----------------------------------------SILG 81
           L LF +M  R+D   N                                        S+L 
Sbjct: 148 LNLFVEM-LRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLD 206

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G + DA  VF+ +P+R +V+   +ISG+AQ G  +EAL LFR++Q   +  NS  
Sbjct: 207 MYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVT 266

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
             S+L+A + L AL++G  V+S++ +       +L  +LIDMY+KCG++  A ++F S  
Sbjct: 267 YASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMP 326

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG-ISPDSISYIAVLSACSHLGWVEKGF 260
           ++   ++ + + G + +G + E  ELF+ M+ +  + PDSI+Y+AVLS CSH    + G 
Sbjct: 327 ERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGL 386

Query: 261 YYFHSMFD-VHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACR 319
             F++M +   GI+P++ HY C+VDLLGRAG +EEA +FI  MP  P   IWG+LLG+CR
Sbjct: 387 EIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSCR 446

Query: 320 VHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGC 379
           VH + E+G  +G  L+E +  + G Y++LSN+Y    K E+   +R  M+++ + + PG 
Sbjct: 447 VHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPGR 506

Query: 380 SLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETV 439
           S +ELD +VH F A D +H + +E+    +E+  K K  GY  +   V++D++EE+KE V
Sbjct: 507 SWVELDQIVHTFHASDHTHPRREEVANKVKELSIKFKEDGYVPDLSCVLYDVDEEQKEKV 566

Query: 440 IGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHH 499
           +  HSEKLALAFGLI T  G+ IR++KN+RIC DCHS  K VS+++ R + +RD+  +H+
Sbjct: 567 LLGHSEKLALAFGLIATPEGTTIRVIKNLRICVDCHSFAKFVSRLYARTVILRDKNRFHN 626

Query: 500 FEDGSCSCLEYW 511
              G CSC +YW
Sbjct: 627 IVGGVCSCGDYW 638



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 144/339 (42%), Gaps = 78/339 (23%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + +K ++   +FV +SL+  Y+  GR+ DA  VF    + DVV+  ++I+GY + G   E
Sbjct: 188 IAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEE 247

Query: 61  GLKLFDKMP----QRNDVSWNSILGGL--------------------------------- 83
            LKLF ++       N V++ S+L  L                                 
Sbjct: 248 ALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLID 307

Query: 84  --VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD-LEPNSA 140
              + G+V  A R+F+ MP+R+ +SW  ++ G++++G  +E L LF+ M+  + ++P+S 
Sbjct: 308 MYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSI 367

Query: 141 ILVSLLSACAQLGALDYGNWV-YSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
             +++LS C+     D G  + Y+ +  K    D I                        
Sbjct: 368 TYLAVLSGCSHGQLEDMGLEIFYNMVNGK----DGI------------------------ 399

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
             + D+  Y   +  L   G   EAF+  + M      P +  + ++L +C     VE G
Sbjct: 400 --EPDIGHYGCVVDLLGRAGRVEEAFDFIKKMP---FVPTAAIWGSLLGSCRVHSDVEIG 454

Query: 260 FYYFHSMFDVHGIKPE-LDHYACMVDLLGRAGLLEEAEN 297
                 + +   ++PE   +Y  + +L   AG  E+  N
Sbjct: 455 IIVGQKLLE---LEPENAGNYVILSNLYASAGKWEDMRN 490



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 111/277 (40%), Gaps = 39/277 (14%)

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCI 170
           +     +G+ KEAL    +M  L  E       S+L+ C    A+  G  V++++ K C 
Sbjct: 37  LKTLCSSGQLKEALL---QMAILGREVKFEGYDSILNECVSQRAIREGQRVHTHMIKTCY 93

Query: 171 KLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFEN 230
                L   LI +Y KC  +  A  +F     ++V ++T+ I   +  G + EA  LF  
Sbjct: 94  LPSVYLRTRLIVLYNKCDCLGDARGMFDEMPQRNVVSWTAMISAYSQRGFAFEALNLFVE 153

Query: 231 MKSKGISPDSISYIAVLSACSHLGWVEKGFY---------YFHSMF-------------- 267
           M      P+  ++  +L++C      E G           Y   MF              
Sbjct: 154 MLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGR 213

Query: 268 --DVHGI---KPELDHYACMVDLLGRA--GLLEEAENFIASMP---MKPDNVIWGTLLGA 317
             D HG+    PE D  AC   + G A  GL EEA      +    M  ++V + ++L A
Sbjct: 214 ICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTA 273

Query: 318 CRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVE 354
                    G+++ + ++ S Q     Y++L N  ++
Sbjct: 274 LSGLAALNHGKQVHSHVLRSGQY---SYVVLLNSLID 307


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 197/552 (35%), Positives = 321/552 (58%), Gaps = 44/552 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFD--ESDDLDVVSWNSMINGYVRNGEIL 59
           V +  F  DVFV+N LI  Y+ C R+  AR VF+     +  +VSW ++++ Y +NGE +
Sbjct: 145 VFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPM 204

Query: 60  EGLKLFDKMPQRNDVS--WNSILGGLVRF------------------------------- 86
           E L++F  M ++ DV   W +++  L  F                               
Sbjct: 205 EALEIFSHM-RKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISL 263

Query: 87  -------GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS 139
                  G V  A  +F++M   +L+ W  +ISG+A+NG  +EA+ +F EM + D+ P++
Sbjct: 264 NTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDT 323

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
             + S +SACAQ+G+L+    +Y Y+ +   + D  + +ALIDM+AKCGS++ A  VF  
Sbjct: 324 ISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDR 383

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
             D+DV  +++ I G  ++G + EA  L+  M+  G+ P+ ++++ +L AC+H G V +G
Sbjct: 384 TLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREG 443

Query: 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACR 319
           +++F+ M D H I P+  HYAC++DLLGRAG L++A   I  MP++P   +WG LL AC+
Sbjct: 444 WWFFNLMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACK 502

Query: 320 VHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGC 379
            HR+ E+G+     L   D ++ G Y+ LSN+Y      +   EVR  M+++ + +  GC
Sbjct: 503 KHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGC 562

Query: 380 SLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETV 439
           S +E+ G +  F  GD+SH + +EI +  E I  ++K  G+     + + D+ +EE E  
Sbjct: 563 SWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEET 622

Query: 440 IGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHH 499
           +  HSE++A+A+GLI T  G+ +RI KN+R C +CH+A KL+SK+  R+I +RD   +HH
Sbjct: 623 LCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHH 682

Query: 500 FEDGSCSCLEYW 511
           F+DG CSC +YW
Sbjct: 683 FKDGVCSCGDYW 694



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 101/359 (28%), Positives = 169/359 (47%), Gaps = 51/359 (14%)

Query: 12  FVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQR 71
           F+   LI   S  G +  AR VFD+     +  WN++I GY RN    + L ++  M Q 
Sbjct: 54  FLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNM-QL 112

Query: 72  NDVSWNSI----------------LGGLV-----RFGSVDDA------------CR---- 94
             VS +S                 +G  V     R G   D             CR    
Sbjct: 113 ARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGS 172

Query: 95  ---VFN--QMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
              VF    +P+R++VSW  ++S +AQNG P EAL +F  M+ +D++P+   LVS+L+A 
Sbjct: 173 ARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAF 232

Query: 150 AQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYT 209
             L  L  G  +++ + K  ++++  L  +L  MYAKCG +  A  +F      ++  + 
Sbjct: 233 TCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWN 292

Query: 210 SAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDV 269
           + I G A NG++ EA ++F  M +K + PD+IS  + +SAC+ +G +E+      SM++ 
Sbjct: 293 AMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQA----RSMYEY 348

Query: 270 HGIKPELDHY---ACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAE 325
            G     D     + ++D+  + G +E A   +    +  D V+W  ++    +H  A 
Sbjct: 349 VGRSDYRDDVFISSALIDMFAKCGSVEGAR-LVFDRTLDRDVVVWSAMIVGYGLHGRAR 406



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 65/149 (43%), Gaps = 2/149 (1%)

Query: 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFE 229
           ++    L   LI   +  G I  A QVF       +  + + I G + N H  +A  ++ 
Sbjct: 49  LQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYS 108

Query: 230 NMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRA 289
           NM+   +SPDS ++  +L ACS L  ++ G +    +F + G   ++     ++ L  + 
Sbjct: 109 NMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRL-GFDADVFVQNGLIALYAKC 167

Query: 290 GLLEEAENFIASMPMKPDNVI-WGTLLGA 317
             L  A      +P+    ++ W  ++ A
Sbjct: 168 RRLGSARTVFEGLPLPERTIVSWTAIVSA 196


>gi|449477579|ref|XP_004155062.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Cucumis sativus]
          Length = 602

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/451 (41%), Positives = 280/451 (62%), Gaps = 2/451 (0%)

Query: 63  KLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKE 122
           ++F    Q + +   S++      G  ++AC++F+++P++ +V+W VLIS   +N R ++
Sbjct: 152 RIFINGHQADSLLLTSMMDLYSHCGKPEEACKLFDEVPQKDVVAWNVLISCLTRNKRTRD 211

Query: 123 ALALFREMQSLD--LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
           AL LF  MQS     +P+    + LL ACA L AL++G  ++ YIQ+     +S LC +L
Sbjct: 212 ALGLFEIMQSPTYLCQPDKVTCLLLLQACADLNALEFGERIHGYIQQHGYNTESNLCNSL 271

Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           I MY++CG +D A +VF    +K+V ++++ I GL+MNGH  EA E F  M+  G+ P  
Sbjct: 272 ISMYSRCGRMDKAYEVFDKMTEKNVVSWSAMISGLSMNGHGREAIEAFWEMQKNGVEPGD 331

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
            ++ AVLSACSH G V++G  +F  M     I P + HY C+VDLLGRAG+L++A   I 
Sbjct: 332 HTFTAVLSACSHCGLVDEGMAFFDRMRQEFMIAPNVHHYGCIVDLLGRAGMLDQAYELIM 391

Query: 301 SMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGEN 360
           SM ++PD  +W TLLGACR+H +  +G+RI   LIE      G Y+LL NIY      + 
Sbjct: 392 SMEVRPDATMWRTLLGACRIHGHGNLGERIVEHLIELKSQEAGDYVLLLNIYSSAGNWDK 451

Query: 361 AEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGY 420
             E+RK M+++ I   P C+ IEL+GVVH+F   D SH    +IY+  +EI K++K  GY
Sbjct: 452 VTELRKLMKEKGIYTTPCCTTIELNGVVHQFAVDDISHPMKDKIYKQLDEINKQLKIAGY 511

Query: 421 NVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKL 480
             E  S +  +E ++K   +  HSEKLA+AFG++ T PG  IRI  NIR C DCH+  K 
Sbjct: 512 EAEMSSELHRLEPKDKGYALSNHSEKLAIAFGVLATPPGRTIRIANNIRTCMDCHNFAKY 571

Query: 481 VSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           +S V+ RK+ +RDR  +HHF++G CSC ++W
Sbjct: 572 ISSVYNRKVVVRDRSRFHHFQEGRCSCNDFW 602



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 118/259 (45%), Gaps = 43/259 (16%)

Query: 5   NSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKL 64
           N    D  +  S++  YS CG+  +A  +FDE    DVV+WN +I+   RN    + L L
Sbjct: 156 NGHQADSLLLTSMMDLYSHCGKPEEACKLFDEVPQKDVVAWNVLISCLTRNKRTRDALGL 215

Query: 65  FDKMP------QRNDVS-----------------------------------WNSILGGL 83
           F+ M       Q + V+                                    NS++   
Sbjct: 216 FEIMQSPTYLCQPDKVTCLLLLQACADLNALEFGERIHGYIQQHGYNTESNLCNSLISMY 275

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
            R G +D A  VF++M ++++VSW  +ISG + NG  +EA+  F EMQ   +EP      
Sbjct: 276 SRCGRMDKAYEVFDKMTEKNVVSWSAMISGLSMNGHGREAIEAFWEMQKNGVEPGDHTFT 335

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSI-LCAALIDMYAKCGSIDLAMQVFHSYGD 202
           ++LSAC+  G +D G   +  ++++ +   ++     ++D+  + G +D A ++  S   
Sbjct: 336 AVLSACSHCGLVDEGMAFFDRMRQEFMIAPNVHHYGCIVDLLGRAGMLDQAYELIMSMEV 395

Query: 203 K-DVSAYTSAIFGLAMNGH 220
           + D + + + +    ++GH
Sbjct: 396 RPDATMWRTLLGACRIHGH 414



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 110/228 (48%), Gaps = 8/228 (3%)

Query: 94  RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM--QSLDLEPNSAILVSLLSACAQ 151
           R+F+ +    +  +  ++  ++ +  P E L ++R+M  Q +  +P S+     + +C +
Sbjct: 82  RLFDLLTNPFVSHYNAMLRAYSLSRSPLEGLYMYRDMERQGVRADPLSSSFA--VKSCIK 139

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSA 211
           L +L +G  +++ I     + DS+L  +++D+Y+ CG  + A ++F     KDV A+   
Sbjct: 140 LLSLLFGIQIHARIFINGHQADSLLLTSMMDLYSHCGKPEEACKLFDEVPQKDVVAWNVL 199

Query: 212 IFGLAMNGHSIEAFELFENMKSKG--ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDV 269
           I  L  N  + +A  LFE M+S      PD ++ + +L AC+ L  +E G    H     
Sbjct: 200 ISCLTRNKRTRDALGLFEIMQSPTYLCQPDKVTCLLLLQACADLNALEFG-ERIHGYIQQ 258

Query: 270 HGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
           HG   E +    ++ +  R G +++A      M  K + V W  ++  
Sbjct: 259 HGYNTESNLCNSLISMYSRCGRMDKAYEVFDKMTEK-NVVSWSAMISG 305


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/548 (37%), Positives = 319/548 (58%), Gaps = 40/548 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +K +   D FV  +LI  YS    +++A  +F   ++ D+V+WN+M++GY ++ +  + L
Sbjct: 451 IKTNNVADSFVSTALIDAYSRNRCMKEAEVLFGR-NNFDLVAWNAMMSGYTQSHDGHKTL 509

Query: 63  KLFDKMPQRNDVS-------------------------------------WNS--ILGGL 83
           +LF  M ++ + S                                     W S  IL   
Sbjct: 510 ELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMY 569

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
           V+ G +  A   F+ +P    V+W  LISG  +NG  + AL +F +M+ + + P+   + 
Sbjct: 570 VKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIA 629

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           +L  A + L AL+ G  +++   K     D  +  +L+DMYAKCGSID A  +F      
Sbjct: 630 TLAKASSCLTALEQGRQIHANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMM 689

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           +++A+ + + GLA +G   EA +LF+ M+S GI PD +++I VLSACSH G V + + Y 
Sbjct: 690 NITAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVLSACSHSGLVSEAYKYI 749

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
            SM   +GIKPE++HY+C+ D LGRAGL++EAEN I SM M+    ++ TLL ACRV  +
Sbjct: 750 RSMHRDYGIKPEIEHYSCLADALGRAGLVKEAENLIDSMSMEASASMYRTLLAACRVQGD 809

Query: 324 AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE 383
            E G+R+   L+E +      Y+LLSN+Y    K +  +  R  M+  K+K+ PG S IE
Sbjct: 810 TETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIE 869

Query: 384 LDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYH 443
           +   +H F+  DRS+ +T+ IY+  +++++ IK  GY  ET   + D+EEEEKE  + YH
Sbjct: 870 VKNKIHLFVVDDRSNPQTELIYKKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYH 929

Query: 444 SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
           SEKLA+AFGL+ T P + IR++KN+R+C DCH+AMK +SKV+ R+I +RD   +H F+DG
Sbjct: 930 SEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYISKVYDREIVLRDANRFHRFKDG 989

Query: 504 SCSCLEYW 511
            CSC +YW
Sbjct: 990 ICSCGDYW 997



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 137/299 (45%), Gaps = 17/299 (5%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D FV  +L+  Y   G+V++ R +F+E    DVV WN M+  Y+  G   E + L     
Sbjct: 186 DDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAF- 244

Query: 70  QRNDVSWNSILGGLVRFGSVDDA----CRVFNQMPKRSLVSWVV----LISGFAQNGRPK 121
             + +  N I   L+   S DD+     + F      S VS ++    ++SG+   G+  
Sbjct: 245 HTSGLHPNEITLRLLSRISGDDSEAGQVKSFENGNDASAVSEIISRNKILSGYLHAGQYS 304

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
             L  F +M   DLE +    + +L+   +L +L  G  V+    K  + L   +  +LI
Sbjct: 305 ALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSLI 364

Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
           +MY K   I LA  VF++  ++D+ ++ S I G+A +   +EA  LF  +   G+ PD  
Sbjct: 365 NMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHY 424

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE--LDHY--ACMVDLLGRAGLLEEAE 296
           +  +VL A S L    +G         VH IK     D +    ++D   R   ++EAE
Sbjct: 425 TMTSVLKAASSL---PEGL-SLSKQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEAE 479



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 124/300 (41%), Gaps = 43/300 (14%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           M +K      + V NSLI  Y    ++  AR VF+   + D++SWNS+I G  ++   +E
Sbjct: 347 MALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVE 406

Query: 61  GLKLF-------------------------------DKMPQRNDVSWNSILGGLVRFGSV 89
            + LF                                K    + +  N++    V    +
Sbjct: 407 AVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALI 466

Query: 90  DDACRVFNQMPKRS----------LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS 139
           D   R  N+  K +          LV+W  ++SG+ Q+    + L LF  M       + 
Sbjct: 467 DAYSR--NRCMKEAEVLFGRNNFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDD 524

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
             L ++L  C  L A++ G  V++Y  K    LD  + + ++DMY KCG +  A   F S
Sbjct: 525 FTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDS 584

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
               D  A+T+ I G   NG    A  +F  M+  G+ PD  +   +  A S L  +E+G
Sbjct: 585 IPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQG 644



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 95/207 (45%), Gaps = 11/207 (5%)

Query: 41  DVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMP 100
           D +S + ++ G   +  IL      ++ P+R  V  N+++    + GS+  A RVF++MP
Sbjct: 55  DAISTSDLMLGKCTHARILA----LEENPERFLV--NNLISMYSKCGSLTYARRVFDKMP 108

Query: 101 KRSLVSWVVLISGFAQNGRP-----KEALALFREMQSLDLEPNSAILVSLLSACAQLGAL 155
           +R LVSW  +++ +AQ+        KEA  LFR ++   +  +   L  +L  C   G +
Sbjct: 109 ERDLVSWNSILAAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYV 168

Query: 156 DYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGL 215
                 + Y  K  +  D  +  AL+++Y K G +     +F     +DV  +   +   
Sbjct: 169 CASESFHGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAY 228

Query: 216 AMNGHSIEAFELFENMKSKGISPDSIS 242
              G   EA +L     + G+ P+ I+
Sbjct: 229 LEMGFKEEAIDLSSAFHTSGLHPNEIT 255



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 15/147 (10%)

Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSI-----EAFELFENMKSK 234
           LI MY+KCGS+  A +VF    ++D+ ++ S +   A +   +     EAF LF  ++  
Sbjct: 87  LISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQSSEGVVENVKEAFLLFRILRQD 146

Query: 235 GISPDSISYIAVLSACSHLGWV--EKGFYYFHSMFDVHGIKPELDHY--ACMVDLLGRAG 290
            +    ++   +L  C H G+V   + F+ +     + G     D +    +V++  + G
Sbjct: 147 VVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLDG-----DDFVAGALVNIYLKFG 201

Query: 291 LLEEAENFIASMPMKPDNVIWGTLLGA 317
            ++E       MP + D V+W  +L A
Sbjct: 202 KVKEGRVLFEEMPYR-DVVLWNLMLKA 227


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/556 (37%), Positives = 319/556 (57%), Gaps = 53/556 (9%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDE---SDDLDVVSWNSMINGYVRNGEI 58
           + K    ++ FV+  LI  Y     V +AR VF+E   S  L  V +N++++GYV N + 
Sbjct: 66  ITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKL-TVCYNALVSGYVSNSKC 124

Query: 59  LEGLKLFDKMPQRNDVSWNSI-LGGLV--------------------------------- 84
            + + LF +M +   V  NS+ L GL+                                 
Sbjct: 125 SDAVLLFRQMNEEG-VPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNC 183

Query: 85  ------RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPN 138
                 + GSV+ A ++F++MP + L+SW  ++SG+AQNG     L L+R M    + P+
Sbjct: 184 FITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPD 243

Query: 139 SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH 198
              LV +LS+CA LGA   G+ V   +Q      +  L  ALI+MYA+CG++  A  VF 
Sbjct: 244 PVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFD 303

Query: 199 SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEK 258
              ++ + ++T+ I G  M+GH   A +LF+ M   GI PD  +++ VLSACSH G  ++
Sbjct: 304 GMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQ 363

Query: 259 GFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
           G  YF  M   + ++P  +HY+CMVDLLGRAG L+EA+  I SMP+KPD  +WG LLGAC
Sbjct: 364 GLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGAC 423

Query: 319 RVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPG 378
           ++H+N E+ +     +IE +  + G Y+LLSNIY      +    +R  M+++K+K+ PG
Sbjct: 424 KIHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPG 483

Query: 379 CSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKI-KNYGYNVETRSVMFDIEEEEKE 437
           CS +EL G VH F+ GDR+H ++ EIY+  EE+   I + +G     +    + EE  K+
Sbjct: 484 CSYVELKGRVHPFIVGDRNHLQSDEIYRVLEELEAIIMQEFG-----KPEKDNREESNKD 538

Query: 438 --TVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRK 495
             T +G HSEKLA+AFGL+ T  G+ + I+KN+RIC DCH   K+VSK+  R++++RD  
Sbjct: 539 GFTRVGVHSEKLAVAFGLLNTTTGAEVVIIKNLRICEDCHLFFKMVSKIVHRQLTVRDAT 598

Query: 496 HYHHFEDGSCSCLEYW 511
            +HHF +GSCSC +YW
Sbjct: 599 RFHHFRNGSCSCKDYW 614



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 83/203 (40%), Gaps = 3/203 (1%)

Query: 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSY 164
             W   +   A+  +  +AL+L+ +M      PN+      L +CA L     G+  +  
Sbjct: 6   TPWNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQ 65

Query: 165 IQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS--YGDKDVSAYTSAIFGLAMNGHSI 222
           I K     +  +   LI MY K   +D A +VF    +  K    Y + + G   N    
Sbjct: 66  ITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCS 125

Query: 223 EAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACM 282
           +A  LF  M  +G+  +S++ + ++ AC     +E G    H     +G   ++    C 
Sbjct: 126 DAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELG-SSLHCSTLKYGFDSDVSVVNCF 184

Query: 283 VDLLGRAGLLEEAENFIASMPMK 305
           + +  + G +  A+     MP+K
Sbjct: 185 ITMYMKCGSVNYAQKLFDEMPVK 207


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/511 (40%), Positives = 300/511 (58%), Gaps = 41/511 (8%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DV    +LI+ Y+  G + +A+ +FDE    DVVSWN+MI+GY   G   E L+LF  M 
Sbjct: 156 DVVSYTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMM 215

Query: 70  Q--------------------------RNDVSW-------------NSILGGLVRFGSVD 90
           +                          R   SW             N+++    + G ++
Sbjct: 216 KTNVRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELE 275

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
            AC +F  +P + ++SW  LI G+      KEAL LF+EM      PN   ++S+L ACA
Sbjct: 276 TACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACA 335

Query: 151 QLGALDYGNWVYSYIQK--KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAY 208
            LGA+D G W++ YI K  K +   S L  +LIDMYAKCG I+ A QVF+S   K +S++
Sbjct: 336 HLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSW 395

Query: 209 TSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD 268
            + IFG AM+G +  +F++F  M+  GI PD I+++ +LSACSH G ++ G + F SM  
Sbjct: 396 NAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQ 455

Query: 269 VHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQ 328
            + + P+L+HY CM+DLLG +GL +EAE  I +M M+PD VIW +LL AC++H N E+G+
Sbjct: 456 DYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGE 515

Query: 329 RIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVV 388
                LI+ +  + G Y+LLSNIY    +       R  +  + +K+ PGCS IE+D VV
Sbjct: 516 SFAQNLIKIEPENPGSYVLLSNIYATAGRWNEVANTRALLNDKGMKKVPGCSSIEIDSVV 575

Query: 389 HEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLA 448
           HEF+ GD+ H + +EIY   EE+   ++  G+  +T  V+ ++EEE KE  + +HSEKLA
Sbjct: 576 HEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLA 635

Query: 449 LAFGLICTKPGSVIRIVKNIRICSDCHSAMK 479
           +AFGLI TKPG+ + IVKN+R+C +CH A K
Sbjct: 636 IAFGLISTKPGTKLTIVKNLRVCRNCHEAYK 666



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 89/289 (30%), Positives = 165/289 (57%), Gaps = 4/289 (1%)

Query: 39  DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQ 98
           DLD+    S+I+ YV+NG + +  K+FD+ P R+ VS+ +++ G    G +++A ++F++
Sbjct: 123 DLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDE 182

Query: 99  MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
           +P + +VSW  +ISG+A+ G  KEAL LF++M   ++ P+ + +V+++SACAQ G+++ G
Sbjct: 183 IPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELG 242

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
             V+S+I       +  +  ALID+Y+KCG ++ A  +F     KDV ++ + I G    
Sbjct: 243 RQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHM 302

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD--VHGIKPEL 276
               EA  LF+ M   G +P+ ++ +++L AC+HLG ++ G  + H   D  + G+    
Sbjct: 303 NLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIG-RWIHVYIDKRLKGVANAS 361

Query: 277 DHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAE 325
                ++D+  + G +E A     S+  K  +  W  ++    +H  A+
Sbjct: 362 SLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSS-WNAMIFGFAMHGRAD 409



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 116/264 (43%), Gaps = 33/264 (12%)

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
            F  +  A  VF  + + +L+ W  +  G A +  P  AL L+  M SL L PNS     
Sbjct: 37  HFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPF 96

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           LL +CA+  A   G  ++ ++ K    LD  +  +LI MY + G ++ A +VF     +D
Sbjct: 97  LLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRD 156

Query: 205 VSAYT-------------------------------SAIFGLAMNGHSIEAFELFENMKS 233
           V +YT                               + I G A  G+  EA ELF++M  
Sbjct: 157 VVSYTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMK 216

Query: 234 KGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLE 293
             + PD  + + V+SAC+  G +E G    HS  D HG    L     ++DL  + G LE
Sbjct: 217 TNVRPDESTMVTVVSACAQSGSIELG-RQVHSWIDDHGFGSNLKIVNALIDLYSKCGELE 275

Query: 294 EAENFIASMPMKPDNVIWGTLLGA 317
            A      +P K D + W TL+G 
Sbjct: 276 TACGLFEGLPYK-DVISWNTLIGG 298


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 211/553 (38%), Positives = 311/553 (56%), Gaps = 42/553 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           MV+K+     +FV NS++  YS    V DA+ VFD  ++ + VSWNSMI G+V NG  LE
Sbjct: 218 MVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLE 277

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRF---------------------------------- 86
             +LF +M         +I   +++                                   
Sbjct: 278 AFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMV 337

Query: 87  -----GSVDDACRVFNQMPK-RSLVSWVVLISGFAQNGRPKEALALFREMQSLD-LEPNS 139
                  +DDA ++F  M   +++VSW  +ISG+ QNGR   A+ LF +M+  + +EPN 
Sbjct: 338 AYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNE 397

Query: 140 AILVSLLSACAQLGA-LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH 198
               S+L+ACA   A ++ G   +S   K        + +AL+ MYAK G+I+ A +VF 
Sbjct: 398 FTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFK 457

Query: 199 SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEK 258
              D+D+ ++ S I G A +G   ++ ++FE M+SK +  D I++I V+SAC+H G V +
Sbjct: 458 RQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNE 517

Query: 259 GFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
           G  YF  M   + I P ++HY+CMVDL  RAG+LE+A + I  MP      IW TLL AC
Sbjct: 518 GQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAAC 577

Query: 319 RVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPG 378
           RVH N ++G+     LI         Y+LLSNIY      +   +VRK M  +K+K+  G
Sbjct: 578 RVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAG 637

Query: 379 CSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKET 438
            S IE+      F+AGD SH ++  IY   EE+  ++K+ GY  +T+ V+ D+EEE KE 
Sbjct: 638 YSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEELSIRLKDAGYYPDTKYVLHDVEEEHKEV 697

Query: 439 VIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYH 498
           ++  HSE+LA+AFGLI T PG+ I+IVKN+R+C DCH+ +KL+SK+  R I +RD   +H
Sbjct: 698 ILSQHSERLAIAFGLIATPPGTPIQIVKNLRVCGDCHTVIKLISKIEGRDIVVRDSNRFH 757

Query: 499 HFEDGSCSCLEYW 511
           HF+ GSCSC +YW
Sbjct: 758 HFKGGSCSCGDYW 770



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 102/361 (28%), Positives = 165/361 (45%), Gaps = 44/361 (12%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +K  F  DV V  SL+  Y     V D   VFDE    +VVSW S++ GY +NG   + L
Sbjct: 119 IKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQAL 178

Query: 63  KLFDKMP----QRNDVSWNSILGGLVRFGSVD---------------------------- 90
           KLF +M     + N  ++ ++LGGL   G+V+                            
Sbjct: 179 KLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMY 238

Query: 91  -------DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
                  DA  VF+ M  R+ VSW  +I+GF  NG   EA  LF  M+   ++    I  
Sbjct: 239 SKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFA 298

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVF-HSYGD 202
           +++  CA +  + +   ++  + K     D  +  AL+  Y+KC  ID A ++F   +G 
Sbjct: 299 TVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGV 358

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENM-KSKGISPDSISYIAVLSAC-SHLGWVEKGF 260
           ++V ++T+ I G   NG +  A  LF  M + +G+ P+  ++ +VL+AC +    VE+G 
Sbjct: 359 QNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQG- 417

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
             FHS     G    L   + +V +  + G +E A N +    +  D V W +++     
Sbjct: 418 KQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESA-NEVFKRQVDRDLVSWNSMISGYAQ 476

Query: 321 H 321
           H
Sbjct: 477 H 477



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 114/228 (50%), Gaps = 10/228 (4%)

Query: 94  RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153
           ++F++ P++ L     L+  F++N + KEAL LF  ++      + + L  +L  C  L 
Sbjct: 47  QLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCL- 105

Query: 154 ALDYGNWVYSYIQKKCIKL----DSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYT 209
              +   V   +  +CIK     D  +  +L+DMY K  S++   +VF     K+V ++T
Sbjct: 106 ---FDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWT 162

Query: 210 SAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDV 269
           S + G   NG + +A +LF  M+ +GI P+  ++ AVL   +  G VEKG    H+M   
Sbjct: 163 SLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGV-QVHTMVIK 221

Query: 270 HGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
            G+   +     MV++  ++ ++ +A+    SM  + + V W +++  
Sbjct: 222 SGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENR-NAVSWNSMIAG 268


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/473 (38%), Positives = 295/473 (62%)

Query: 39  DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQ 98
           +LD     ++ N Y + G I E  ++F KM  +N V+W S L   ++ G +  A +VF++
Sbjct: 396 ELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSE 455

Query: 99  MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
           MP R++VSW ++I+G+AQNG   +   L   M++   +P+   ++++L AC  L  L+ G
Sbjct: 456 MPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERG 515

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
             V++   K  ++ D+++  +LI MY+KCG +  A  VF    ++D  A+ + + G   +
Sbjct: 516 KLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQH 575

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDH 278
           G  +EA +LF+ M  + +SP+ I+  AV+SACS  G V++G   F  M +   + P   H
Sbjct: 576 GDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTPRKQH 635

Query: 279 YACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338
           Y CMVDLLGRAG L+EAE FI SMP +PD  +W  LLGAC+ H N ++ +R  + ++E +
Sbjct: 636 YGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQLAERAAHHILELE 695

Query: 339 QNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSH 398
            ++   YI LSNIY +  + +++ +VR+ M  R +K+  G S IE+DG +H F+A D +H
Sbjct: 696 PSYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGESSIEIDGRIHTFVAEDCAH 755

Query: 399 EKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKP 458
            +   I+   E + K++K  GY  + R V+ D+++ +KE  + +HSEKLA+A+GL+ T  
Sbjct: 756 PEIDAIHAELETLTKEMKEAGYTPDMRFVLHDVDDVQKEKALCHHSEKLAIAYGLLKTPS 815

Query: 459 GSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           G+ IRI+KN+R+C DCH+A K +SK+ KR+I  RD   +H+F +G+CSC ++W
Sbjct: 816 GTPIRIMKNLRVCGDCHTATKFISKIRKREIVARDANRFHYFNNGTCSCGDFW 868



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 100/350 (28%), Positives = 172/350 (49%), Gaps = 46/350 (13%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D+++ NSLI FYS    V  A  VF      DVV+W+SMI  Y  N    +    F++M 
Sbjct: 90  DIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMT 149

Query: 70  ----QRNDVSWNSILGGLVRF-----------------------------------GSVD 90
               + N +++ SIL     +                                   G + 
Sbjct: 150 DANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEIS 209

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
            AC VF++M +R++VSW  +I   AQ+ +  EA  L+ +M    + PN+   VSLL++C 
Sbjct: 210 VACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCN 269

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
              AL+ G  ++S+I ++ ++ D I+  ALI MY KC S+  A ++F     +DV ++++
Sbjct: 270 TPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSA 329

Query: 211 AIFGLAMNGH----SI-EAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHS 265
            I G A +G+    SI E F+L E M+ +G+ P+ ++++++L AC+  G +E+G    H+
Sbjct: 330 MIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQG-RQIHA 388

Query: 266 MFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
                G + +      + ++  + G + EAE   + M  K + V W + L
Sbjct: 389 ELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANK-NVVAWTSFL 437



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 108/387 (27%), Positives = 176/387 (45%), Gaps = 77/387 (19%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DV V  +LI  YS CG +  A  VF +  + +VVSW ++I    ++ ++ E  +L+++M 
Sbjct: 191 DVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQML 250

Query: 70  QR----NDVSWNSILG---------------------GL--------------VRFGSVD 90
           Q     N V++ S+L                      GL               +  SV 
Sbjct: 251 QAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQ 310

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNG-RPKEAL----ALFREMQSLDLEPNSAILVSL 145
           +A  +F++M KR ++SW  +I+G+AQ+G + KE++     L   M+   + PN    +S+
Sbjct: 311 EAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSI 370

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
           L AC   GAL+ G  +++ + K   +LD  L  A+ +MYAKCGSI  A QVF    +K+V
Sbjct: 371 LRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNV 430

Query: 206 SAYTS-------------------------------AIFGLAMNGHSIEAFELFENMKSK 234
            A+TS                                I G A NG  ++ FEL  +MK++
Sbjct: 431 VAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAE 490

Query: 235 GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEE 294
           G  PD ++ I +L AC  L  +E+G    H+     G++ +      ++ +  + G + E
Sbjct: 491 GFQPDRVTVITILEACGALAGLERG-KLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAE 549

Query: 295 AENFIASMPMKPDNVIWGTLLGACRVH 321
           A      M  + D V W  +L     H
Sbjct: 550 ARTVFDKMSNR-DTVAWNAMLAGYGQH 575



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 103/213 (48%), Gaps = 17/213 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
            VK     D  V  SLI  YS CG+V +AR VFD+  + D V+WN+M+ GY ++G+ LE 
Sbjct: 522 AVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEA 581

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQM-------PKRSLVSWVVL 110
           + LF +M +     N+++  +++    R G V +   +F  M       P++     +V 
Sbjct: 582 VDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTPRKQHYGCMVD 641

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCI 170
           + G A  GR +EA      +QS+  EP+ ++  +LL AC     +        +I +   
Sbjct: 642 LLGRA--GRLQEAEEF---IQSMPCEPDISVWHALLGACKSHNNVQLAERAAHHILELEP 696

Query: 171 KLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
              S+    L ++YA+ G  D + +V     D+
Sbjct: 697 SYASVYI-TLSNIYAQAGRWDDSTKVRRVMDDR 728



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 100/205 (48%), Gaps = 2/205 (0%)

Query: 118 GRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILC 177
           GR +EA+ L   ++   L  NS     ++  CA+    + G  V+  + +  +++D  L 
Sbjct: 35  GRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLG 94

Query: 178 AALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGIS 237
            +LI+ Y+K   +  A QVF     +DV  ++S I   A N H  +AF+ FE M    I 
Sbjct: 95  NSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIE 154

Query: 238 PDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAEN 297
           P+ I+++++L AC++   +EKG    H++    G++ ++     ++ +  + G +  A  
Sbjct: 155 PNRITFLSILKACNNYSILEKG-RKIHTIVKAMGMETDVAVATALITMYSKCGEISVACE 213

Query: 298 FIASMPMKPDNVIWGTLLGACRVHR 322
               M  + + V W  ++ A   HR
Sbjct: 214 VFHKMTER-NVVSWTAIIQANAQHR 237


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/542 (36%), Positives = 309/542 (57%), Gaps = 40/542 (7%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DV V NS +  +   G + DAR +F++  D DVV+WN +I  YV+N    E ++LF ++ 
Sbjct: 241 DVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQ 300

Query: 70  Q----RNDVSW---------------NSILGGLVRFGSVD-------------------- 90
           Q     ND+++                 ++  LV+    D                    
Sbjct: 301 QDGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPG 360

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
            A ++F  M  + +++W V+   +AQNG  KEAL LF+EMQ     P SA LV++L  CA
Sbjct: 361 QAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCA 420

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
            L AL  G  ++S+I +   +++ ++  ALI+MY KCG +  A  VF     +D+  + S
Sbjct: 421 HLAALQKGRQIHSHIIENGFRMEMVVETALINMYGKCGKMAEARSVFEKMAKRDILVWNS 480

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            +   A +G+  E  +LF  M+  G   D++S+++VLSA SH G V  G+ YF +M    
Sbjct: 481 MLGAYAQHGYYDETLQLFNQMQLDGEKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDF 540

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMP-MKPDNVIWGTLLGACRVHRNAEMGQR 329
            I P  + Y C+VDLLGRAG ++EA + +  +    PD ++W TLLGACR H   +  + 
Sbjct: 541 SITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKA 600

Query: 330 IGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVH 389
               ++E D +H G Y++LSN+Y      +    +RK MR R +K+ PG S IE+   VH
Sbjct: 601 AAEQVLERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVH 660

Query: 390 EFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLAL 449
           EFL GDRSH +   IY   + +  +++  GY  +T+ ++ D+E+E KE ++ YHSE+LA+
Sbjct: 661 EFLEGDRSHPRRHPIYAELDVLNSEMRAAGYIPDTKMILHDVEDERKEDMLFYHSERLAI 720

Query: 450 AFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLE 509
           AFGL+ T PG+ +R++KN+R+CSDCH+A K +SK+  R+I +RD   +H+F+DG CSC +
Sbjct: 721 AFGLMSTPPGTPLRVIKNLRVCSDCHTATKYISKLRGREILVRDTHRFHNFKDGRCSCKD 780

Query: 510 YW 511
           YW
Sbjct: 781 YW 782



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 99/359 (27%), Positives = 166/359 (46%), Gaps = 41/359 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++  F  DVFV  +LI  Y+ CG VR A   F   +  DVVSW +MI   V++ +    
Sbjct: 132 ILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALA 191

Query: 62  LKLFDKM------PQR--------------------------------NDVS-WNSILGG 82
             L+ +M      P +                                +DV   NS +  
Sbjct: 192 RWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMESDVRVMNSAMNM 251

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
               G + DA R+F  M  R +V+W ++I+ + QN    EA+ LF  +Q   ++ N    
Sbjct: 252 FGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKANDITF 311

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           V +L+    L +L  G  ++  +++     D ++  AL+ +Y +C +   A ++F   G 
Sbjct: 312 VLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMGS 371

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           KDV  +T      A NG   EA +LF+ M+ +G  P S + +AVL  C+HL  ++KG   
Sbjct: 372 KDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKG-RQ 430

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            HS    +G + E+     ++++ G+ G + EA +    M  K D ++W ++LGA   H
Sbjct: 431 IHSHIIENGFRMEMVVETALINMYGKCGKMAEARSVFEKMA-KRDILVWNSMLGAYAQH 488



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 140/289 (48%), Gaps = 3/289 (1%)

Query: 66  DKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALA 125
           D+  ++N++    ++    + GSV +A +VF  + ++ + +W  +I  + Q G    AL 
Sbjct: 33  DRGFEQNNLVCGHLIQMYAQCGSVPEAQQVFEILERKDVFAWTRMIGIYCQQGDYDRALG 92

Query: 126 LFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYA 185
           +F +MQ  D+ P     V++L+ACA   +L  G  ++  I ++  + D  +  ALI+MY 
Sbjct: 93  MFYQMQEEDVMPTKVTYVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYN 152

Query: 186 KCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIA 245
           KCGS+  A   F     +DV ++T+ I     +     A  L+  M+  G+ P+ I+   
Sbjct: 153 KCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYT 212

Query: 246 VLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMK 305
           V +A     ++ +G  + +S+     ++ ++      +++ G AGLL +A      M + 
Sbjct: 213 VFNAYGDPHYLSEG-KFIYSLVSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDM-VD 270

Query: 306 PDNVIWGTLLGACRVHRN-AEMGQRIGNMLIESDQNHDGRYILLSNIYV 353
            D V W  ++     + N  E  +  G +  +  + +D  ++L+ N+Y 
Sbjct: 271 RDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKANDITFVLMLNVYT 319



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 145/352 (41%), Gaps = 41/352 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V    F  +  V   LIQ Y+ CG V +A+ VF+  +  DV +W  MI  Y + G+    
Sbjct: 31  VCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVFEILERKDVFAWTRMIGIYCQQGDYDRA 90

Query: 62  LKLFDKMPQRN----DVSWNSILGGLV--------------------------------- 84
           L +F +M + +     V++ +IL                                     
Sbjct: 91  LGMFYQMQEEDVMPTKVTYVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINM 150

Query: 85  --RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + GSV  A   F ++  R +VSW  +I+   Q+ +   A  L+R MQ   + PN   L
Sbjct: 151 YNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITL 210

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            ++ +A      L  G ++YS +  + ++ D  +  + ++M+   G +  A ++F    D
Sbjct: 211 YTVFNAYGDPHYLSEGKFIYSLVSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDMVD 270

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           +DV  +   I     N +  EA  LF  ++  GI  + I+++ +L+  + L  + KG   
Sbjct: 271 RDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKANDITFVLMLNVYTSLTSLAKG-KV 329

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTL 314
            H +    G   ++     ++ L GR     +A      M  K D + W  +
Sbjct: 330 IHELVKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMGSK-DVITWTVM 380



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 94/187 (50%), Gaps = 2/187 (1%)

Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
            +P++A  V+LL  C+    +D+G  V+ ++  +  + ++++C  LI MYA+CGS+  A 
Sbjct: 1   FKPDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQ 60

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
           QVF     KDV A+T  I      G    A  +F  M+ + + P  ++Y+A+L+AC+   
Sbjct: 61  QVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTE 120

Query: 255 WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTL 314
            ++ G    H      G + ++     ++++  + G +  A +    +  + D V W  +
Sbjct: 121 SLKDGM-EIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHR-DVVSWTAM 178

Query: 315 LGACRVH 321
           + AC  H
Sbjct: 179 IAACVQH 185



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 85/159 (53%), Gaps = 15/159 (9%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++N F  ++ V+ +LI  Y  CG++ +AR VF++    D++ WNSM+  Y ++G   E 
Sbjct: 435 IIENGFRMEMVVETALINMYGKCGKMAEARSVFEKMAKRDILVWNSMLGAYAQHGYYDET 494

Query: 62  LKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQM-------PKRSLVSWVVL 110
           L+LF++M     + + VS+ S+L  L   GSV D  + F  M       P   L   VV 
Sbjct: 495 LQLFNQMQLDGEKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVD 554

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
           + G A  GR +EA+ +  ++      P+  + ++LL AC
Sbjct: 555 LLGRA--GRIQEAVDIVLKLSG--CLPDGILWMTLLGAC 589



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 98/237 (41%), Gaps = 42/237 (17%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V +  +  DV V  +L+  Y  C     A  +F +    DV++W  M   Y +NG   E
Sbjct: 333 LVKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKE 392

Query: 61  GLKLFDKMPQRNDVSWNSILGGLV------------------------------------ 84
            L+LF +M        ++ L  ++                                    
Sbjct: 393 ALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENGFRMEMVVETALIN 452

Query: 85  ---RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G + +A  VF +M KR ++ W  ++  +AQ+G   E L LF +MQ LD E   A+
Sbjct: 453 MYGKCGKMAEARSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQ-LDGEKADAV 511

Query: 142 -LVSLLSACAQLGALDYG-NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
             VS+LSA +  G++  G  +  + +Q   I     L   ++D+  + G I  A+ +
Sbjct: 512 SFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQEAVDI 568


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/542 (37%), Positives = 305/542 (56%), Gaps = 40/542 (7%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DVFV  SL+  YS  G    A  VFD      ++SWN+MI+GYV+NG I E   LF ++ 
Sbjct: 280 DVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLV 339

Query: 70  QRNDVSWNSILGGLVR---------------------------------------FGSVD 90
           Q      +  L  L+R                                        G++ 
Sbjct: 340 QSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCIIRKELESHLVLSTAIVDMYSKCGAIK 399

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
            A  VF +M K+++++W  ++ G +QNG  ++AL LF +MQ   +  NS  LVSL+  CA
Sbjct: 400 QATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCA 459

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS-YGDKDVSAYT 209
            LG+L  G  V+++  +     D+++ +ALIDMYAKCG I  A ++F++ +  KDV    
Sbjct: 460 HLGSLTKGRTVHAHFIRHGYAFDAVITSALIDMYAKCGKIHSAEKLFNNEFHLKDVILCN 519

Query: 210 SAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDV 269
           S I G  M+GH   A  ++  M  + + P+  +++++L+ACSH G VE+G   FHSM   
Sbjct: 520 SMIMGYGMHGHGRYALGVYSRMIEERLKPNQTTFVSLLTACSHSGLVEEGKALFHSMERD 579

Query: 270 HGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQR 329
           H ++P+  HYAC+VDL  RAG LEEA+  +  MP +P   +   LL  CR H+N  MG +
Sbjct: 580 HDVRPQHKHYACLVDLHSRAGRLEEADELVKQMPFQPSTDVLEALLSGCRTHKNTNMGIQ 639

Query: 330 IGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVH 389
           I + LI  D  + G Y++LSNIY E  K E+   +R  MR + +K+ PG SLIE+   V+
Sbjct: 640 IADRLISLDYLNSGIYVMLSNIYAEARKWESVNYIRGLMRMQGMKKIPGYSLIEVGNKVY 699

Query: 390 EFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLAL 449
            F A D SH    +IYQ  E +  +++  GY  +T  V+ D+ E  K  ++  HSE+LA+
Sbjct: 700 TFFASDDSHPSWADIYQLLENLRLEVEAEGYIPDTSCVLRDVNEPMKVKLLWGHSERLAI 759

Query: 450 AFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLE 509
           AFGL+ T  GS+I+I KN+R+C DCH+  K +SK+ +R+I +RD   +HHF +G CSC +
Sbjct: 760 AFGLLSTPCGSLIKITKNLRVCVDCHNVTKYISKIVQREIIVRDANRFHHFVNGKCSCND 819

Query: 510 YW 511
           +W
Sbjct: 820 FW 821



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 131/489 (26%), Positives = 223/489 (45%), Gaps = 94/489 (19%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           V+  F   ++V +S++ F    G + DA+ VFD   + DVV WNS+I GYV+ G   E +
Sbjct: 172 VRRGFHLHLYVGSSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESI 231

Query: 63  KLFDKM------PQR--------------------------------NDV-SWNSILGGL 83
           ++F +M      P                                  NDV    S++   
Sbjct: 232 QMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMY 291

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
              G    A  VF+ M  RSL+SW  +ISG+ QNG   E+ ALFR +       +S  LV
Sbjct: 292 SNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTLV 351

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           SL+  C+Q   L+ G  ++S I +K ++   +L  A++DMY+KCG+I  A  VF   G K
Sbjct: 352 SLIRGCSQTSDLENGRILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQATIVFGRMGKK 411

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           +V  +T+ + GL+ NG++ +A +LF  M+ + ++ +S++ ++++  C+HLG + KG    
Sbjct: 412 NVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKG-RTV 470

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI------------ASMPM------- 304
           H+ F  HG   +    + ++D+  + G +  AE                SM M       
Sbjct: 471 HAHFIRHGYAFDAVITSALIDMYAKCGKIHSAEKLFNNEFHLKDVILCNSMIMGYGMHGH 530

Query: 305 ----------------KPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGR---- 344
                           KP+   + +LL AC      E G+ + + +   +++HD R    
Sbjct: 531 GRYALGVYSRMIEERLKPNQTTFVSLLTACSHSGLVEEGKALFHSM---ERDHDVRPQHK 587

Query: 345 -YILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQE 403
            Y  L +++    + E A+E+ K M  +     P   ++E        L+G R+H+ T  
Sbjct: 588 HYACLVDLHSRAGRLEEADELVKQMPFQ-----PSTDVLE------ALLSGCRTHKNTNM 636

Query: 404 IYQFWEEIV 412
             Q  + ++
Sbjct: 637 GIQIADRLI 645



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 157/354 (44%), Gaps = 43/354 (12%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++KN  + + F+   LI+ YS  G +  AR VFD+    +    N+MI G++RN + +E 
Sbjct: 70  IIKNWVSTESFLAAKLIRVYSDLGFLGHARNVFDQCSLPETAVCNAMIAGFLRNQQHMEV 129

Query: 62  LKLFDKMPQRNDVSWNS----------------------------------------ILG 81
            +LF +M    D+  NS                                        ++ 
Sbjct: 130 PRLF-RMMGSCDIEINSYTCMFALKACTDLLDDEVGMEIIRAAVRRGFHLHLYVGSSMVN 188

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
            LV+ G + DA +VF+ MP++ +V W  +I G+ Q G   E++ +F EM    L P+   
Sbjct: 189 FLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVT 248

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           + +LL AC Q G    G   +SY+    +  D  +  +L+DMY+  G    A  VF S  
Sbjct: 249 MANLLKACGQSGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMC 308

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
            + + ++ + I G   NG   E++ LF  +   G   DS + ++++  CS    +E G  
Sbjct: 309 SRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENG-R 367

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
             HS      ++  L     +VD+  + G +++A      M  K + + W  +L
Sbjct: 368 ILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQATIVFGRMG-KKNVITWTAML 420



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/234 (21%), Positives = 104/234 (44%), Gaps = 43/234 (18%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++      + +  +++  YS CG ++ A  VF      +V++W +M+ G  +NG   + 
Sbjct: 373 IIRKELESHLVLSTAIVDMYSKCGAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDA 432

Query: 62  LKLFDKMPQRNDVSWNSI-----------LGGLV-------------------------- 84
           LKLF +M Q   V+ NS+           LG L                           
Sbjct: 433 LKLFCQM-QEEKVAANSVTLVSLVHCCAHLGSLTKGRTVHAHFIRHGYAFDAVITSALID 491

Query: 85  ---RFGSVDDACRVF-NQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
              + G +  A ++F N+   + ++    +I G+  +G  + AL ++  M    L+PN  
Sbjct: 492 MYAKCGKIHSAEKLFNNEFHLKDVILCNSMIMGYGMHGHGRYALGVYSRMIEERLKPNQT 551

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKC-IKLDSILCAALIDMYAKCGSIDLA 193
             VSLL+AC+  G ++ G  ++  +++   ++      A L+D++++ G ++ A
Sbjct: 552 TFVSLLTACSHSGLVEEGKALFHSMERDHDVRPQHKHYACLVDLHSRAGRLEEA 605


>gi|45935146|gb|AAS79604.1| putative pentatricopeptide repeat-containing protein [Ipomoea
           trifida]
 gi|118562903|dbj|BAF37793.1| hypothetical protein [Ipomoea trifida]
          Length = 575

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 195/464 (42%), Positives = 291/464 (62%), Gaps = 4/464 (0%)

Query: 50  NGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVV 109
           +G+ R G+ + GL +F      +    N+++      G  + A +VF++MP R +VSW  
Sbjct: 114 SGHARFGKQIHGL-VFKSGVGSDRYINNALIHLYSVSGEPNLAYKVFDKMPDRDVVSWTS 172

Query: 110 LISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC 169
           +I GF  N RP EA+ LF  M    +EPN   + S+L ACA  GAL+ G  ++S++++K 
Sbjct: 173 IIDGFVDNDRPIEAIRLFTHMIENGIEPNEVTVASVLRACADTGALNTGERIHSFVKEKN 232

Query: 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFE 229
              ++ +  ALIDMYAKCG ID A++VF    +KDV  +T+ I GLA +G  ++A E FE
Sbjct: 233 FSSNANVSTALIDMYAKCGCIDGALEVFDETLEKDVYVWTAIIAGLASHGLCMKAIEFFE 292

Query: 230 NMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRA 289
           NMK   +  D  +  AVLSA  + G V +G  +F  +   H IKP + HY C+VD+L RA
Sbjct: 293 NMKKSDVKMDERAITAVLSAYRNAGLVSEGLLFFRRL-KKHKIKPTIQHYGCVVDMLTRA 351

Query: 290 GLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNML--IESDQNHDGRYIL 347
           G L++AE FI  MP++PD V+W TL+  C++  + E  +R+   L  +  D    G Y+L
Sbjct: 352 GRLKDAEEFIRKMPIEPDAVLWRTLIWGCKILGDVERSERLVRELELLNMDSRDTGSYVL 411

Query: 348 LSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQF 407
           L N+Y  T K E   + R+ M +R + + P CS IE+DGVVHEF AGD  H++   +Y+ 
Sbjct: 412 LENVYAATGKWEEKAKTRELMYQRGLMKPPACSRIEIDGVVHEFTAGDSRHDEATAVYEK 471

Query: 408 WEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKN 467
            E++ ++++  GYN     V+ +I+++EK + + +HSEKLA++FGL+ + PGSVIRIVKN
Sbjct: 472 LEDVEERLRGEGYNPIVSEVLLEIDDDEKASQLLHHSEKLAVSFGLVKSSPGSVIRIVKN 531

Query: 468 IRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           +R C DCHS MKL+SKV++R I +RDR  +HHF  G+CSC + W
Sbjct: 532 LRSCEDCHSFMKLISKVYQRDIIVRDRIRFHHFSGGNCSCGDRW 575



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 106/241 (43%), Gaps = 8/241 (3%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD------LEPNSA 140
           G ++ A  +   +   +   +  +I  ++ +  P  A  LF  MQ+ D        P+  
Sbjct: 43  GDLNYARHILRTLHTPNSFYYNTMIRAYSDSTDPTRAFTLFLYMQNPDDASVAVPRPDHF 102

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
               +L AC++ G   +G  ++  + K  +  D  +  ALI +Y+  G  +LA +VF   
Sbjct: 103 TYPFVLKACSKSGHARFGKQIHGLVFKSGVGSDRYINNALIHLYSVSGEPNLAYKVFDKM 162

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
            D+DV ++TS I G   N   IEA  LF +M   GI P+ ++  +VL AC+  G +  G 
Sbjct: 163 PDRDVVSWTSIIDGFVDNDRPIEAIRLFTHMIENGIEPNEVTVASVLRACADTGALNTG- 221

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
              HS           +    ++D+  + G ++ A   +    ++ D  +W  ++     
Sbjct: 222 ERIHSFVKEKNFSSNANVSTALIDMYAKCGCIDGALE-VFDETLEKDVYVWTAIIAGLAS 280

Query: 321 H 321
           H
Sbjct: 281 H 281



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 124/270 (45%), Gaps = 19/270 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V K+    D ++ N+LI  YSV G    A  VFD+  D DVVSW S+I+G+V N   +E
Sbjct: 126 LVFKSGVGSDRYINNALIHLYSVSGEPNLAYKVFDKMPDRDVVSWTSIIDGFVDNDRPIE 185

Query: 61  GLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS----WVVLIS 112
            ++LF  M +     N+V+  S+L      G+++   R+ + + +++  S       LI 
Sbjct: 186 AIRLFTHMIENGIEPNEVTVASVLRACADTGALNTGERIHSFVKEKNFSSNANVSTALID 245

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKL 172
            +A+ G    AL +F E    D+   +AI+  L S    + A+++    +  ++K  +K+
Sbjct: 246 MYAKCGCIDGALEVFDETLEKDVYVWTAIIAGLASHGLCMKAIEF----FENMKKSDVKM 301

Query: 173 DSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSA----YTSAIFGLAMNGHSIEAFELF 228
           D     A++  Y   G +   +  F       +      Y   +  L   G   +A E  
Sbjct: 302 DERAITAVLSAYRNAGLVSEGLLFFRRLKKHKIKPTIQHYGCVVDMLTRAGRLKDAEEFI 361

Query: 229 ENMKSKGISPDSISYIAVLSACSHLGWVEK 258
             M    I PD++ +  ++  C  LG VE+
Sbjct: 362 RKMP---IEPDAVLWRTLIWGCKILGDVER 388


>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
          Length = 694

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/549 (37%), Positives = 313/549 (57%), Gaps = 57/549 (10%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCG--RVRDARWVFDESDDLDVVSWNSMINGYVRNGEIL 59
           +++    +D F  + LI   ++     +  A+ VFD+    ++ +WN++I  Y  +    
Sbjct: 58  MLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPH 117

Query: 60  EGLKLFDKM-------PQRNDVSW---------------------------------NSI 79
           + L +F +M       P +    +                                 NS+
Sbjct: 118 QSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSL 177

Query: 80  LGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS 139
           +    + G +    RVF   P+R +VSW  +I+ F Q G P+EAL LF+EM++ +++PN 
Sbjct: 178 IHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNG 237

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
             +V +LSACA+    ++G WV+SYI++  I     L  A++DMY KCGS++ A ++F  
Sbjct: 238 ITMVGVLSACAKKSDFEFGRWVHSYIERNRIXESLTLSNAMLDMYTKCGSVEDAKRLFDK 297

Query: 200 YGDKDVSAYTS------------AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVL 247
             +KD+ ++T+            A  GLAM+GH  +A  LF  M+   + P+++++  +L
Sbjct: 298 MPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNIL 357

Query: 248 SACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPD 307
            ACSH+G VE+G  +F+ M  V+G+ P + HYACMVD+LGRAGLLEEA   I  MPM P 
Sbjct: 358 CACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPA 417

Query: 308 NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKT 367
             +WG LLGAC +H N  + ++  + LIE +  + G Y+LLSNIY +  K +    +RK 
Sbjct: 418 ASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKL 477

Query: 368 MRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSV 427
           MR   +K+ PGCS IE+DG+VHEFL GD SH   ++IY   +EIV +++  GY V  +S 
Sbjct: 478 MRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAKLDEIVARLETIGY-VPNKSH 536

Query: 428 MFDIEEEE--KETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVF 485
           +  + EEE  KE  +  HSEKLA+AFGLI T     IRIVKN+R+C DCHS  KLVSK++
Sbjct: 537 LLQLVEEEDVKEQALFLHSEKLAIAFGLISTGQSQPIRIVKNLRVCGDCHSVAKLVSKLY 596

Query: 486 KRKISIRDR 494
            R+I +RDR
Sbjct: 597 DREILLRDR 605


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/514 (38%), Positives = 292/514 (56%), Gaps = 35/514 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K     D  V ++LI  Y  C    +   VFD+ D +DV S                 
Sbjct: 276 VIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSC---------------- 319

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSL----VSWVVLISGFAQN 117
                          N+ + GL R G V+ + R+F Q+  + +    VSW  +I+  +QN
Sbjct: 320 ---------------NAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQN 364

Query: 118 GRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILC 177
           GR  EAL LFREMQ   ++PNS  +  LL AC  + AL +G   + +  ++ I  D  + 
Sbjct: 365 GRDIEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVG 424

Query: 178 AALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGIS 237
           +ALIDMYAKCG I  +   F     K++  + + I G AM+G + EA E+F+ M+  G  
Sbjct: 425 SALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQK 484

Query: 238 PDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAEN 297
           PD IS+  VLSACS  G  E+G YYF+SM   +GI+  ++HYACMV LL RAG LE+A  
Sbjct: 485 PDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYA 544

Query: 298 FIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLK 357
            I  MP+ PD  +WG LL +CRVH N  +G+     L E + ++ G YILLSNIY     
Sbjct: 545 MIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGM 604

Query: 358 GENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKN 417
                 VR  M+ + +++ PGCS IE+   VH  LAGD+SH +  +I +  +++  ++K 
Sbjct: 605 WNEVNRVRDMMKNKGLRKNPGCSWIEVKNKVHMLLAGDKSHPQMTQIIEKLDKLSMEMKK 664

Query: 418 YGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSA 477
            GY  E   V+ D+EE++KE ++  HSEKLA+ FGL+ T PG  ++++KN+RIC DCH  
Sbjct: 665 LGYFPEINFVLQDVEEQDKEQILCGHSEKLAVVFGLLNTPPGYPLQVIKNLRICGDCHVV 724

Query: 478 MKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           +K +S   +R+I +RD   +HHF++G+CSC +YW
Sbjct: 725 IKFISSFERREIFVRDTNRFHHFKEGACSCGDYW 758



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 135/258 (52%), Gaps = 5/258 (1%)

Query: 39  DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQ 98
           D D    +S+++ Y++  +I +  ++FD+M + + VSW++++    R G VD+A R+F++
Sbjct: 146 DSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSE 205

Query: 99  MP----KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA 154
           M     + +L+SW  +I+GF  +G   EA+ +F +M     EP+   + S+L A   L  
Sbjct: 206 MGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLED 265

Query: 155 LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFG 214
           L  G  ++ Y+ K+ +  D  + +ALIDMY KC       QVF      DV +  + IFG
Sbjct: 266 LVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFG 325

Query: 215 LAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP 274
           L+ NG    +  LF  +K +G+  + +S+ ++++ CS  G   +    F  M  + G+KP
Sbjct: 326 LSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREM-QIAGVKP 384

Query: 275 ELDHYACMVDLLGRAGLL 292
                 C++   G    L
Sbjct: 385 NSVTIPCLLPACGNIAAL 402



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 92/185 (49%), Gaps = 1/185 (0%)

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           DA  V + +P+ ++ S+  LI  F++  +   AL+ F +M +  L P++ +L S + ACA
Sbjct: 66  DATLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACA 125

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
            L AL     V+          DS + ++L+ MY KC  I  A +VF    + DV ++++
Sbjct: 126 GLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSA 185

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            +   A  G   EA  LF  M   G+ P+ IS+  +++  +H G   +    F  M  + 
Sbjct: 186 LVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDM-HLR 244

Query: 271 GIKPE 275
           G +P+
Sbjct: 245 GFEPD 249


>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
 gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
          Length = 539

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 198/518 (38%), Positives = 301/518 (58%), Gaps = 23/518 (4%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + V++    D+FV N+L+  Y+ CG V +A  VFD   + DVVSWN+M+NGY + G   +
Sbjct: 38  IAVRSGSFEDLFVGNALVDMYAKCGMVDEASKVFDRIKEKDVVSWNAMVNGYSQIGRFED 97

Query: 61  GLKLFDKMPQRND----VSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQ 116
            L LF+KM + N     VSW++++    + G   +   VF +M                Q
Sbjct: 98  ALGLFEKMREENIELNVVSWSAVIAAFAQRGLGCETLDVFREM----------------Q 141

Query: 117 NGRPKEALALFREMQSLD--LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDS 174
           +G   +AL LF  M   D  ++PN   +   L ACA+L AL  G  +++YI +       
Sbjct: 142 HGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQIHAYILRNHFDSAF 201

Query: 175 ILCA-ALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKS 233
           +  A  LIDMYAK G ID+A  VF +   K+  ++TS + G  M+G   EA E+F+ M+ 
Sbjct: 202 LYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGRGKEALEVFDEMRR 261

Query: 234 KGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLE 293
            G+ PD ++ + VL ACSH G +++G  +F+SM    G+ P  +HYACMVDLLGRAG L 
Sbjct: 262 VGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEHYACMVDLLGRAGRLN 321

Query: 294 EAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYV 353
           EA   I  M M+P +++W  LL  CR+H N E+G+     L+E +  +DG Y LLSNIY 
Sbjct: 322 EAMELIEGMQMEPSSIVWVALLSGCRIHANVELGEHAAKQLLELNSENDGSYTLLSNIYA 381

Query: 354 ETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVK 413
              + ++   VR  M+   I++ PGCS ++       F   D++H ++++IY+    + +
Sbjct: 382 NARRWKDVARVRSLMKNSGIRKRPGCSWVQGKKGTTTFYVADKTHPQSKQIYEILRSLTQ 441

Query: 414 KIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSD 473
           +IK  GY  ET   + D+++EEK  ++  HSEKLALA+G++ + PG+ IRI KN+R+C D
Sbjct: 442 RIKVLGYVPETSFALHDVDDEEKVDLLFEHSEKLALAYGILISAPGAPIRITKNLRVCGD 501

Query: 474 CHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           CH+A+  +S +   +I +RD   +HHF+ GSCSC  YW
Sbjct: 502 CHNAITYISMIIDHEIILRDSSRFHHFKKGSCSCSGYW 539



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 72/126 (57%)

Query: 129 EMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCG 188
           ++  +D+ P+   LV++L ACA +GA  +G  V+    +     D  +  AL+DMYAKCG
Sbjct: 3   KLGDIDMRPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCG 62

Query: 189 SIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248
            +D A +VF    +KDV ++ + + G +  G   +A  LFE M+ + I  + +S+ AV++
Sbjct: 63  MVDEASKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIA 122

Query: 249 ACSHLG 254
           A +  G
Sbjct: 123 AFAQRG 128


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/586 (35%), Positives = 323/586 (55%), Gaps = 76/586 (12%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +V N F  D+ V  +LI  Y  CG   +AR VFD+    D+VSWN MI  YV+NG+  E 
Sbjct: 233 IVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEA 292

Query: 62  LKLFDKMP----QRNDVSWNSILG---------------------GL------------- 83
           L+L+ K+     +R   ++ SILG                     GL             
Sbjct: 293 LELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNM 352

Query: 84  -VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKE-------------------- 122
             + GS+++A +VFN M  R  V+W  LI  +A NG  K+                    
Sbjct: 353 YAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWN 412

Query: 123 --------------ALALFREMQ-SLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK 167
                         A+ +FREM  +  L+P++   +++L ACA LG L     +++ I +
Sbjct: 413 AMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISE 472

Query: 168 KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFEL 227
             ++ + ++   LI+MYA+CGS++ A ++F +  +K V ++T+ +   +  G   EA +L
Sbjct: 473 SELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDL 532

Query: 228 FENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLG 287
           F+ M  +G+ PD ++Y ++L  C+H G +E+G+ YF  M ++HG+ P  DH+A MVDLLG
Sbjct: 533 FQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGLAPTADHFAAMVDLLG 592

Query: 288 RAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYIL 347
           R+G L +A+  + SMP +PD V W T L ACR+H   E+G+     + E D +    YI 
Sbjct: 593 RSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPSSTAPYIA 652

Query: 348 LSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQF 407
           +SNIY      E    VRK M +R +K+ PG S IE+DG +HEF +G + H +T EI + 
Sbjct: 653 MSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHPRTDEICEE 712

Query: 408 WEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTK-PGSVIRIVK 466
              +   ++  GY  +T++V+ D+ E EKET++ YHSEK+A+AFGL+ ++  G  IR+VK
Sbjct: 713 LTRLHGLMRAAGYVPDTKAVLHDVSEGEKETMLLYHSEKMAIAFGLVSSRGSGEPIRVVK 772

Query: 467 NIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF-EDGSCSCLEYW 511
           N+R+CSDCH+A K ++++  R I +RD   +H F  DG CSC +YW
Sbjct: 773 NLRVCSDCHTATKFIARIAGRDIILRDCNRFHRFSSDGKCSCGDYW 818



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 107/349 (30%), Positives = 167/349 (47%), Gaps = 41/349 (11%)

Query: 7   FAYDVFVKNSLIQFYSVCGRVRDARWVFDESD--DLDVVSWNSMINGYVRNGEILEGLKL 64
           F  D  V N+LI  Y  C  + DAR VF+  D    +VVSWN+MI  Y +NG   E L L
Sbjct: 38  FERDTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVL 97

Query: 65  FDKMPQR----NDVSWNSILG------------------GL--------------VRFGS 88
           + +M  +    + V++ S+LG                  GL               RFGS
Sbjct: 98  YWRMNLQGLGTDHVTFVSVLGACSSLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGS 157

Query: 89  VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148
           V DA R+F  +  R   SW  +I   +Q+G    AL +F+EM+  D++PNS   ++++S 
Sbjct: 158 VGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMK-CDMKPNSTTYINVISG 216

Query: 149 CAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAY 208
            +    L  G  +++ I       D ++  ALI+MY KCGS   A +VF     +D+ ++
Sbjct: 217 FSTPEVLPEGRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSW 276

Query: 209 TSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD 268
              I     NG   EA EL++ +  +G      +++++L ACS +  + +G    HS   
Sbjct: 277 NVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQG-RLVHSHIL 335

Query: 269 VHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
             G+  E+     +V++  + G LEEA     +M  + D V W TL+GA
Sbjct: 336 ERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNR-DAVAWSTLIGA 383



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/378 (25%), Positives = 176/378 (46%), Gaps = 75/378 (19%)

Query: 13  VKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP--- 69
           + N+L+  Y+  G V DA+ +F      D  SWN++I  + ++G+    L++F +M    
Sbjct: 144 LANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCDM 203

Query: 70  QRNDVSWNSILGGLV-----------------------------------RFGSVDDACR 94
           + N  ++ +++ G                                     + GS  +A  
Sbjct: 204 KPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEARE 263

Query: 95  VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA 154
           VF++M KR +VSW V+I  + QNG   EAL L++++     +   A  VS+L AC+ + A
Sbjct: 264 VFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKA 323

Query: 155 LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFG 214
           L  G  V+S+I ++ +  +  +  AL++MYAKCGS++ A +VF++  ++D  A+++ I  
Sbjct: 324 LAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGA 383

Query: 215 LAMNGH----------------------------------SIEAFELFENMK-SKGISPD 239
            A NG+                                  ++ A ++F  M  + G+ PD
Sbjct: 384 YASNGYGKDARKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPD 443

Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI 299
           ++++IAVL AC+ LG + +     H+      ++  +     ++++  R G LEEAE   
Sbjct: 444 AVTFIAVLEACASLGRLSE-VKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLF 502

Query: 300 ASMPMKPDNVIWGTLLGA 317
           A+   K   V W  ++ A
Sbjct: 503 AAAKEKT-VVSWTAMVAA 519



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 139/286 (48%), Gaps = 18/286 (6%)

Query: 56  GEILEGLKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMP--KRSLVSWVV 109
           G++ EG  L +++     +R+ +  N+++    +  S+ DA  VF  M   +R++VSW  
Sbjct: 21  GDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVSWNA 80

Query: 110 LISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC 169
           +I+ +AQNG   EAL L+  M    L  +    VS+L AC+ L     G  +++ +    
Sbjct: 81  MIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLAQ---GREIHNRVFYSG 137

Query: 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFE 229
           +     L  AL+ MYA+ GS+  A ++F S   +D +++ + I   + +G    A  +F+
Sbjct: 138 LDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFK 197

Query: 230 NMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRA 289
            MK   + P+S +YI V+S  S    + +G    H+    +G   +L     ++++ G+ 
Sbjct: 198 EMKCD-MKPNSTTYINVISGFSTPEVLPEG-RKIHAEIVANGFDSDLVVATALINMYGKC 255

Query: 290 GLLEEAENFIASMPMKPDNVIWGTLLGACRV-----HRNAEMGQRI 330
           G   EA      M  K D V W  ++G C V     H   E+ Q++
Sbjct: 256 GSSHEAREVFDKMK-KRDMVSWNVMIG-CYVQNGDFHEALELYQKL 299



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 113/240 (47%), Gaps = 14/240 (5%)

Query: 133 LDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDL 192
           +D +P++   +++L +C+  G +  G  ++  I+    + D+++  ALI MY KC S+  
Sbjct: 1   MDRQPDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVD 60

Query: 193 AMQVFHS--YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250
           A  VF S  +  ++V ++ + I   A NGHS EA  L+  M  +G+  D +++++VL AC
Sbjct: 61  ARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGAC 120

Query: 251 SHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVI 310
           S L    +     H+     G+         +V +  R G + +A+    S+  + D   
Sbjct: 121 SSLAQGRE----IHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTR-DETS 175

Query: 311 WGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370
           W  ++ A     +++ G   G + I  +   D +    S  Y+  + G +  EV    RK
Sbjct: 176 WNAVILA-----HSQSGDWSGALRIFKEMKCDMKPN--STTYINVISGFSTPEVLPEGRK 228


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/573 (35%), Positives = 327/573 (57%), Gaps = 63/573 (10%)

Query: 2   VVKNSFAYDVFVKNSLIQFYS----------------------VCGRVRDARWVFDESDD 39
           V++  F +D++  N+L+  YS                         ++   R +FD    
Sbjct: 102 VIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKLFDRMPV 161

Query: 40  LDVVSWNSMINGYVRNGEILEGLKLFDKMPQRN----DVSWNSIL--------------- 80
            DVVSWN++I G  +NG   E L +  +M + N      + +SIL               
Sbjct: 162 RDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHANVTKGKEI 221

Query: 81  -GGLVRFG-------------------SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
            G  +R G                    V+ +   F+ +  R  +SW  +I+G  QNGR 
Sbjct: 222 HGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQNGRF 281

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
            + L  FR M    ++P      S++ ACA L AL+ G  +++YI +     +  + ++L
Sbjct: 282 DQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFIASSL 341

Query: 181 IDMYAKCGSIDLAMQVFHSYG--DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISP 238
           +DMYAKCG+I +A  +F+     D+D+ ++T+ I G AM+GH+++A  LFE M   G+ P
Sbjct: 342 LDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLFEEMLVDGVKP 401

Query: 239 DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENF 298
             ++++AVL+ACSH G V++G+ YF+SM    G+ P L+HYA + DLLGRAG LEEA +F
Sbjct: 402 CYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHYAAVADLLGRAGRLEEAYDF 461

Query: 299 IASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKG 358
           I++M  +P   +W TLL ACR H+N E+ +++ N ++  D  + G ++++SNIY    + 
Sbjct: 462 ISNMGEEPTGSVWSTLLAACRAHKNIELAEKVVNKILLVDPGNMGAHVIMSNIYSAAQRW 521

Query: 359 ENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNY 418
            +A ++R  MRK  +K+ P CS IE+   VH FLAGD+SH    +I +    ++++++  
Sbjct: 522 RDAAKLRVRMRKTGLKKTPACSWIEVGNKVHTFLAGDKSHPYYDKINEALNILLEQMEKE 581

Query: 419 GYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAM 478
           GY ++T  V+ D++EE K  ++  HSE+LA+AFG+I T  G+ IR++KNIR+C DCH+A+
Sbjct: 582 GYVLDTNEVLHDVDEEHKRDLLRTHSERLAIAFGIISTTSGTTIRVIKNIRVCVDCHTAI 641

Query: 479 KLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           K ++K+  R+I +RD   +HHF++GSCSC +YW
Sbjct: 642 KFMAKIVGREIIVRDNSRFHHFKNGSCSCGDYW 674



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/249 (20%), Positives = 103/249 (41%), Gaps = 26/249 (10%)

Query: 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSY 164
           ++W+ +I  +A +G  + +LA F  ++S  + P+  +  SLL A       +    +++ 
Sbjct: 42  LAWICIIKCYASHGLLRHSLASFNLLRSFGISPDRHLFPSLLRASTLFKHFNLAQSLHAA 101

Query: 165 IQKKCIKLDSILCAALIDMYAK----------------------CGSIDLAMQVFHSYGD 202
           + +     D     AL++MY+K                         ID   ++F     
Sbjct: 102 VIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKLFDRMPV 161

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           +DV ++ + I G A NG   EA  + + M  + + PDS +  ++L   +    V KG   
Sbjct: 162 RDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHANVTKG-KE 220

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
            H     HG   ++   + ++D+  +   +E +      +  + D + W +++  C   +
Sbjct: 221 IHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNR-DAISWNSIIAGCV--Q 277

Query: 323 NAEMGQRIG 331
           N    Q +G
Sbjct: 278 NGRFDQGLG 286


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 198/548 (36%), Positives = 303/548 (55%), Gaps = 40/548 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           VK    +     N+L+  Y+ CG +  A  VFD      VV+W S+I  Y R G   E +
Sbjct: 25  VKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVRTVVTWTSLIAAYAREGLSDEAI 84

Query: 63  KLFDKMP---------------------------------------QRNDVSWNSILGGL 83
           +LF +M                                        Q N    N+++   
Sbjct: 85  RLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMY 144

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
            + GS++DA  VF +MP + ++SW  +I G+++N  P EAL+LF +M  L+++P+   L 
Sbjct: 145 AKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDM-VLEMKPDGTTLA 203

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
            +L ACA L +LD G  V+ +I +     D  +  AL+DMY KCG   LA  +F     K
Sbjct: 204 CILPACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTK 263

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           D+  +T  I G  M+G    A   F  M+  GI PD +S+I++L ACSH G +++G+ +F
Sbjct: 264 DLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFF 323

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
           + M D   +KP+L+HYAC+VDLL R+G L  A  FI SMP++PD  IWG LL  CR+H +
Sbjct: 324 NVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRIHHD 383

Query: 324 AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE 383
            ++ +++   + E +  + G Y+LL+N Y E  K E  +++R+ + +R +K+ PGCS IE
Sbjct: 384 VKLAEKVAEHVFELEPENTGYYVLLANTYAEAEKWEEVKKLRQKIGRRGLKKNPGCSWIE 443

Query: 384 LDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYH 443
           +   VH FLAG+ SH + ++I    + +  K+K  GY  +TR  + + +  +KET +  H
Sbjct: 444 VKSKVHIFLAGNSSHPQAKKIEVLLKRLRSKMKEEGYFPKTRYALINADSLQKETALCGH 503

Query: 444 SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
           SEKLA+AFG++   P   IR+ KN+R+C DCH   K +SK   R+I +RD   +HHF+DG
Sbjct: 504 SEKLAMAFGILNLPPARTIRVSKNLRVCGDCHEMAKFISKTLGREIVLRDSNRFHHFKDG 563

Query: 504 SCSCLEYW 511
            C C  +W
Sbjct: 564 VCCCRGFW 571



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/182 (35%), Positives = 92/182 (50%), Gaps = 14/182 (7%)

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           +VS+L ACA  G +  G  V+    K C+   +  C  L+DMYAKCG +D A+ VF    
Sbjct: 1   MVSILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMS 60

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
            + V  +TS I   A  G S EA  LF  M  +G+SPD  +   VL AC+  G +E G  
Sbjct: 61  VRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENG-- 118

Query: 262 YFHSMFDVHGIKPELDH----YAC--MVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
                 DVH    E D     + C  ++D+  + G +E+A +    MP+K D + W T++
Sbjct: 119 -----KDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVK-DIISWNTMI 172

Query: 316 GA 317
           G 
Sbjct: 173 GG 174



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 82/157 (52%), Gaps = 12/157 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++N F  D  V N+L+  Y  CG    AR +FD     D+++W  MI GY  +G     
Sbjct: 225 ILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNA 284

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMP-----KRSLVSWVVLIS 112
           +  F++M Q     ++VS+ SIL      G +D+  R FN M      K  L  +  ++ 
Sbjct: 285 ITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVD 344

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
             A++G  K A+A ++ ++S+ +EP++ I  +LLS C
Sbjct: 345 LLARSG--KLAMA-YKFIKSMPIEPDATIWGALLSGC 378


>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 658

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/470 (38%), Positives = 292/470 (62%), Gaps = 4/470 (0%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N+MI+ YV+ G I+   K+FD+MP+R+ +SW  ++    R G+++ A  +F  +P + +V
Sbjct: 189 NTMIDMYVKCGSIVCARKVFDEMPERDVISWTELIAAYARVGNMESAADLFESLPTKDMV 248

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           +W  +++GFAQN +P+EAL  F  M+   +  +   +   +SACAQLGA  Y +      
Sbjct: 249 AWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIA 308

Query: 166 QKKCIKLDS--ILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIE 223
           QK         ++ +ALIDMY+KCG+++ A+ VF S  +K+V +Y+S I GLA +G + E
Sbjct: 309 QKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFVSMNNKNVFSYSSMILGLATHGRAQE 368

Query: 224 AFELFENMKSK-GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACM 282
           A +LF  M ++  I P++++++  L+ACSH G V++G   F SM+   G++P  DHY CM
Sbjct: 369 ALDLFHYMVTQTAIKPNTVTFVGALTACSHSGLVDQGRQVFASMYQTFGVEPTRDHYTCM 428

Query: 283 VDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD 342
           VDLLGRAG L+EA   I +M ++P   +WG LLGACR+H N ++ +     L E + +  
Sbjct: 429 VDLLGRAGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPDIAEIAAEHLFELEPDII 488

Query: 343 GRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS-LIELDGVVHEFLAGDRSHEKT 401
           G YILLSN+Y           VRK ++++ +K+ P  S +++ +G +H+F  G+ +H  +
Sbjct: 489 GNYILLSNVYSSAGDWGGVLSVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGNLNHPMS 548

Query: 402 QEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSV 461
           ++I    EE+V+++   GY  +  SV +D+ +  K  ++  H+EKLALAF L+ T     
Sbjct: 549 KKIQDKLEELVERLTALGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSLLTTNRDYT 608

Query: 462 IRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           I+I+KN+R+C DCH  M+L S+V  R I +RD   +HHF  G+CSC ++W
Sbjct: 609 IKIMKNLRMCQDCHMFMRLASEVTGRVIIMRDNMRFHHFRSGACSCGDFW 658



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 111/249 (44%), Gaps = 42/249 (16%)

Query: 94  RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153
           RV   +  R+   W  +I G+   G+  EA+A++  M+  ++ P S    +LL AC  +G
Sbjct: 105 RVIEPVQFRNPFLWTAVIRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMG 164

Query: 154 ALDYG-----------NWVYSYIQKKCI----KLDSILCA----------------ALID 182
            L+ G            + + Y+    I    K  SI+CA                 LI 
Sbjct: 165 DLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCGSIVCARKVFDEMPERDVISWTELIA 224

Query: 183 MYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSIS 242
            YA+ G+++ A  +F S   KD+ A+T+ + G A N    EA E F+ M+  GI  D ++
Sbjct: 225 AYARVGNMESAADLFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVT 284

Query: 243 YIAVLSACSHLG---WVEKGFYYFHSMFDVHGIKPELDHY---ACMVDLLGRAGLLEEAE 296
               +SAC+ LG   + ++       +    G  P  DH    + ++D+  + G +EEA 
Sbjct: 285 VAGYISACAQLGASKYADRAV----QIAQKSGYSPS-DHVVIGSALIDMYSKCGNVEEAV 339

Query: 297 NFIASMPMK 305
           N   SM  K
Sbjct: 340 NVFVSMNNK 348



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 126/318 (39%), Gaps = 87/318 (27%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWN------------------------ 46
           V+V N++I  Y  CG +  AR VFDE  + DV+SW                         
Sbjct: 185 VYVGNTMIDMYVKCGSIVCARKVFDEMPERDVISWTELIAAYARVGNMESAADLFESLPT 244

Query: 47  -------SMINGYVRNGEILEGLKLFDKM------------------------------- 68
                  +M+ G+ +N +  E L+ FD+M                               
Sbjct: 245 KDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRA 304

Query: 69  ----------PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNG 118
                     P  + V  ++++    + G+V++A  VF  M  +++ S+  +I G A +G
Sbjct: 305 VQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFVSMNNKNVFSYSSMILGLATHG 364

Query: 119 RPKEALALFREM-QSLDLEPNSAILVSLLSACAQLGALDYGNWVY-SYIQKKCIKLDSIL 176
           R +EAL LF  M     ++PN+   V  L+AC+  G +D G  V+ S  Q   ++     
Sbjct: 365 RAQEALDLFHYMVTQTAIKPNTVTFVGALTACSHSGLVDQGRQVFASMYQTFGVEPTRDH 424

Query: 177 CAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHS------IEAFELFEN 230
              ++D+  + G +  A+++  +   +       A+ G A   H+      I A  LFE 
Sbjct: 425 YTCMVDLLGRAGRLQEALELIKTMSVEPHGGVWGALLG-ACRIHNNPDIAEIAAEHLFE- 482

Query: 231 MKSKGISPDSISYIAVLS 248
                + PD I    +LS
Sbjct: 483 -----LEPDIIGNYILLS 495


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/513 (39%), Positives = 299/513 (58%), Gaps = 34/513 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDE--SDDLDVVSWNSMINGYVRNGEIL 59
           +V   F     V N+LI  YS CG V  AR + ++  + DL +  + ++++GY++     
Sbjct: 305 IVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIK----- 359

Query: 60  EGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGR 119
                                      G +++A  +F+ +  R +V+W  +I G+ Q+G 
Sbjct: 360 --------------------------LGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGL 393

Query: 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
             EA+ LFR M   +  PNS  L ++LS  + L +L +G  ++    K        +  A
Sbjct: 394 YGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNA 453

Query: 180 LIDMYAKCGSIDLAMQVFHSYG-DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISP 238
           LI MYAK GSI  A + F     ++D  ++TS I  LA +GH+ EA ELFE M  +G+ P
Sbjct: 454 LITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRP 513

Query: 239 DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENF 298
           D I+Y+ V SAC+H G V +G  YF  M DV  I P L HYACMVDL GRAGLL+EA+ F
Sbjct: 514 DHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEF 573

Query: 299 IASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKG 358
           I  MP++PD V WG+LL ACRV++N ++G+     L+  +  + G Y  L+N+Y    K 
Sbjct: 574 IEKMPIEPDVVTWGSLLSACRVYKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKW 633

Query: 359 ENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNY 418
           E A ++RK+M+  ++K+  G S IE+   VH F   D  H +  EIY   ++I  +IK  
Sbjct: 634 EEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHAFGVEDGIHPQKNEIYITMKKIWDEIKKM 693

Query: 419 GYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAM 478
           GY  +T SV+ D+EEE KE ++ +HSEKLA+AFGLI T   + +RI+KN+R+C+DCH+A+
Sbjct: 694 GYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAI 753

Query: 479 KLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           K +SK+  R+I +RD   +HHF+DG CSC +YW
Sbjct: 754 KFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 140/290 (48%), Gaps = 41/290 (14%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N+++N Y + G  L   KLFD+MP R   SWN++L    + G +D +C  F+++P+R  V
Sbjct: 53  NNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSV 112

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           SW  +I G+   G+  +A+ +  EM    +EP+   L ++L++ A    L+ G  V+S+I
Sbjct: 113 SWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFI 172

Query: 166 QKKCIKLDSILCAALIDMYAKC-------------------------------GSIDLAM 194
            K  ++ +  +  +L++MYAKC                               G +DLAM
Sbjct: 173 VKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAM 232

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM-KSKGISPDSISYIAVLSACSHL 253
             F    ++D+  + S I G    G+ + A ++F  M +   +SPD  +  +VLSAC++L
Sbjct: 233 AQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANL 292

Query: 254 GWVEKG----FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI 299
             +  G     +   + FD+ GI         ++ +  R G +E A   I
Sbjct: 293 EKLCIGEQIHSHIVTTGFDISGIV-----LNALISMYSRCGGVETARRLI 337



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 145/314 (46%), Gaps = 35/314 (11%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           NS++N Y + G+ +    +FD+M  ++  SWN+++   ++ G +D A   F QM +R +V
Sbjct: 185 NSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIV 244

Query: 106 SWVVLISGFAQNGRPKEALALFREM-QSLDLEPNSAILVSLLSACAQLGALDYGNWVYSY 164
           +W  +ISG+ Q G    AL +F +M +   L P+   L S+LSACA L  L  G  ++S+
Sbjct: 245 TWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSH 304

Query: 165 IQKKCIKLDSILCAALIDMYAKCGSIDLAMQ----------------------------- 195
           I      +  I+  ALI MY++CG ++ A +                             
Sbjct: 305 IVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMN 364

Query: 196 ----VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS 251
               +F S  D+DV A+T+ I G   +G   EA  LF +M  +   P+S +  A+LS  S
Sbjct: 365 EAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVAS 424

Query: 252 HLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIW 311
            L  +  G    H      G    +     ++ +  +AG +  A      +  + D V W
Sbjct: 425 SLASLGHG-KQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSW 483

Query: 312 GTLLGACRVHRNAE 325
            +++ A   H +AE
Sbjct: 484 TSMIIALAQHGHAE 497


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/558 (36%), Positives = 315/558 (56%), Gaps = 49/558 (8%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++V   F  D F+   LI  +S    V +AR VFD++    +  WN++       G   +
Sbjct: 94  LLVDGGFDQDPFLATKLINMFSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGRGND 153

Query: 61  GLKLFDKMP----QRNDVSWNSILGGLV-------------------------------- 84
            L+L+ +M       +  ++  +L   V                                
Sbjct: 154 VLELYPRMNMMGVSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHILRHGYGAHVHVMT 213

Query: 85  -------RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM--QSLDL 135
                  RFG V  A  VF++MP +++VSW  +I+ +A+NG+P EAL LFREM   + D 
Sbjct: 214 TLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALELFREMMLNTHDS 273

Query: 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSIL--CAALIDMYAKCGSIDLA 193
            PNS  +VS+L ACA   AL+ G  +++YI ++   LDSIL   +ALI MYA+CG ++  
Sbjct: 274 VPNSVTMVSVLQACAAFAALEQGKLIHAYILRR--GLDSILPVISALITMYARCGKLESG 331

Query: 194 MQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL 253
             +F     KDV  + S I    ++G+  +A ++FE M   G SP  IS+I+VL ACSH 
Sbjct: 332 QLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISFISVLGACSHT 391

Query: 254 GWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGT 313
           G VE+G   F SM   HGI+P ++HYACMVDLLGRA  L+EA   I  + ++P   +WG+
Sbjct: 392 GLVEEGKKLFESMVKEHGIQPSVEHYACMVDLLGRANRLDEAAKIIEDLRIEPGPKVWGS 451

Query: 314 LLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKI 373
           LLGACR+H + E+ +R    L + +  + G Y+LL++IY E    +  + V+K +  R++
Sbjct: 452 LLGACRIHCHVELAERASKRLFKLEPTNAGNYVLLADIYAEAEMWDEVKRVKKLLDSREL 511

Query: 374 KRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEE 433
           ++ PG S IE+   ++ F + D  + + ++++     +  ++K  GY  +T+ V++D+++
Sbjct: 512 QKVPGRSWIEVRRKIYSFTSVDEFNPQGEQLHALLVNLSNEMKQRGYTPQTKLVLYDLDQ 571

Query: 434 EEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRD 493
           EEKE ++  HSEKLA+AFGLI T  G  IRI KN+R+C DCHS  K +SK   R+I +RD
Sbjct: 572 EEKERIVLGHSEKLAVAFGLINTSKGDTIRITKNLRLCEDCHSVTKFISKFADREIMVRD 631

Query: 494 RKHYHHFEDGSCSCLEYW 511
              +HHF+DG CSC +YW
Sbjct: 632 LNRFHHFKDGVCSCGDYW 649



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 137/317 (43%), Gaps = 12/317 (3%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK----LFDKMPQ 70
           N LIQ     G ++ A ++     +    +   +I    R   + + L     L D    
Sbjct: 42  NHLIQSLCKQGNLKQALYLLSHESNPTQQTCELLILSAARRNSLSDALDVHQLLVDGGFD 101

Query: 71  RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM 130
           ++      ++       +VD+A +VF++  KR++  W  L    A  GR  + L L+  M
Sbjct: 102 QDPFLATKLINMFSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGRGNDVLELYPRM 161

Query: 131 QSLDLEPNSAILVSLLSACAQ----LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAK 186
             + +  +      LL AC      +  L  G  ++++I +        +   L+DMYA+
Sbjct: 162 NMMGVSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHILRHGYGAHVHVMTTLMDMYAR 221

Query: 187 CGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM--KSKGISPDSISYI 244
            G +  A  VF     K+V ++++ I   A NG   EA ELF  M   +    P+S++ +
Sbjct: 222 FGCVSYASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALELFREMMLNTHDSVPNSVTMV 281

Query: 245 AVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPM 304
           +VL AC+    +E+G    H+     G+   L   + ++ +  R G LE  +     M  
Sbjct: 282 SVLQACAAFAALEQG-KLIHAYILRRGLDSILPVISALITMYARCGKLESGQLIFDRM-H 339

Query: 305 KPDNVIWGTLLGACRVH 321
           K D V+W +L+ +  +H
Sbjct: 340 KKDVVLWNSLISSYGLH 356


>gi|77548549|gb|ABA91346.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 624

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 177/471 (37%), Positives = 289/471 (61%), Gaps = 22/471 (4%)

Query: 41  DVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMP 100
           D V   ++++ + R G I    K+FD++   +  +WN++L    R  + D AC       
Sbjct: 176 DRVLGAALLDVFARCGRIASCRKVFDRIANPDLPAWNALLSAYARLRARDVAC------- 228

Query: 101 KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNW 160
                           +      L +F  M SL ++PN   LV+++ AC +LGA+ +G W
Sbjct: 229 ---------------ASSAADAILEMFVRMLSLAIKPNEITLVAVIGACGELGAVSHGVW 273

Query: 161 VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGH 220
            ++Y  K+ + ++ I+  AL++MYA CG +DLA QVF +  D+D   Y + + GLA++GH
Sbjct: 274 AHTYAVKRRLAVNCIVATALVEMYAGCGRLDLAEQVFAAASDRDTRCYNAMLHGLAVHGH 333

Query: 221 SIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA 280
              A  LF+ M  +G+  D ++ ++V+ AC+H G V++G  YF  M    GI+P ++HY 
Sbjct: 334 GRAALSLFDRMHGEGVPVDGVTVLSVMCACAHAGLVDEGLDYFDRMEIEFGIEPSIEHYG 393

Query: 281 CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQN 340
           CMVD+L RAG L +AE  I  MP+ P+  I+ +L+ AC +H   E+G+++   L+  + +
Sbjct: 394 CMVDMLSRAGRLNDAEKLIHGMPIVPNAAIYRSLIRACGIHGKLELGKKMIAELMRLEPD 453

Query: 341 HDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEK 400
             G ++L+SN Y  T + ++A++ RK M+   I ++PG S ++++GV+HEFL GD++H  
Sbjct: 454 DSGNHVLISNFYATTNRWDDAKKARKEMKSMGIDKSPGSSFVDINGVLHEFLVGDKTHPA 513

Query: 401 TQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGS 460
           ++EIY   E+I  ++   G+   T S +FD+EEE+K   + YHSE+LA+AF LI + PG+
Sbjct: 514 SKEIYAMVEDIETRLSECGHRSSTSSALFDVEEEDKADALSYHSERLAIAFALIASNPGA 573

Query: 461 VIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            IRI+KN+R+C+DCH + KLVS+V+ R+I +RDR  +HHF DG CSC ++W
Sbjct: 574 PIRIIKNLRVCADCHESAKLVSRVYGREIVMRDRTRFHHFRDGVCSCGDFW 624



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 12/175 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
            VK   A +  V  +L++ Y+ CGR+  A  VF  + D D   +N+M++G   +G     
Sbjct: 278 AVKRRLAVNCIVATALVEMYAGCGRLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRAA 337

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMP-----KRSLVSWVVLIS 112
           L LFD+M       + V+  S++      G VD+    F++M      + S+  +  ++ 
Sbjct: 338 LSLFDRMHGEGVPVDGVTVLSVMCACAHAGLVDEGLDYFDRMEIEFGIEPSIEHYGCMVD 397

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK 167
             ++ GR  +A  L   M    + PN+AI  SL+ AC   G L+ G  + + + +
Sbjct: 398 MLSRAGRLNDAEKLIHGMP---IVPNAAIYRSLIRACGIHGKLELGKKMIAELMR 449



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/238 (20%), Positives = 98/238 (41%), Gaps = 49/238 (20%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVR------------NGE 57
           D  +  +L+  ++ CGR+   R VFD   + D+ +WN++++ Y R               
Sbjct: 176 DRVLGAALLDVFARCGRIASCRKVFDRIANPDLPAWNALLSAYARLRARDVACASSAADA 235

Query: 58  ILEG-LKLFDKMPQRNDVSWNSILGGLVRFGSV--------------------------- 89
           ILE  +++     + N+++  +++G     G+V                           
Sbjct: 236 ILEMFVRMLSLAIKPNEITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVNCIVATALVE 295

Query: 90  --------DDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
                   D A +VF     R    +  ++ G A +G  + AL+LF  M    +  +   
Sbjct: 296 MYAGCGRLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRAALSLFDRMHGEGVPVDGVT 355

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI-LCAALIDMYAKCGSIDLAMQVFH 198
           ++S++ ACA  G +D G   +  ++ +     SI     ++DM ++ G ++ A ++ H
Sbjct: 356 VLSVMCACAHAGLVDEGLDYFDRMEIEFGIEPSIEHYGCMVDMLSRAGRLNDAEKLIH 413



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 9/107 (8%)

Query: 164 YIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLA------- 216
           ++       D +L AAL+D++A+CG I    +VF    + D+ A+ + +   A       
Sbjct: 167 FLGAHAASCDRVLGAALLDVFARCGRIASCRKVFDRIANPDLPAWNALLSAYARLRARDV 226

Query: 217 --MNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
              +  +    E+F  M S  I P+ I+ +AV+ AC  LG V  G +
Sbjct: 227 ACASSAADAILEMFVRMLSLAIKPNEITLVAVIGACGELGAVSHGVW 273


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/549 (37%), Positives = 316/549 (57%), Gaps = 41/549 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K+    DVFV N+LI  YS  GR++DA+ VFD+ +  D+VSWNS+I  Y +N +    
Sbjct: 248 VLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTA 307

Query: 62  LKLFDKM-------------------PQRNDVSWN-SILGGLVR---------------- 85
           L+ F  M                    Q +D   + SILG ++R                
Sbjct: 308 LRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVN 367

Query: 86  ----FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL-DLEPNSA 140
                G ++ A  VF+Q+P++  +SW  L++G+ QNG   EA+  +  M+   D  PN  
Sbjct: 368 MYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQG 427

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
             VS++ A + +GAL  G  +++ + K  + LD  +   LID+Y KCG ++ AM +F+  
Sbjct: 428 TWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEI 487

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
                  + + I  L ++G   EA +LF++M ++ +  D I+++++LSACSH G V++G 
Sbjct: 488 PRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQ 547

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
             F  M   +GIKP L HY CMVDLLGRAG LE+A   + +MP++PD  IWG LL AC++
Sbjct: 548 KCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKI 607

Query: 321 HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS 380
           + NAE+G    + L+E D  + G Y+LLSNIY  T K E   +VR   R R +++ PG S
Sbjct: 608 YGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWS 667

Query: 381 LIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVI 440
            + +      F  G+++H K  EIY+  + +  K+K+ GY  +   V  DIEE+EKE ++
Sbjct: 668 SVVVGSKAEVFYTGNQTHPKYTEIYKELKVLSAKMKSLGYVPDYSFVYQDIEEDEKEQIL 727

Query: 441 GYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF 500
             HSE+LA+AFG+I T P S IRI KN+R+C DCH+A K +S++ +R+I +RD   +HHF
Sbjct: 728 NSHSERLAIAFGIISTPPRSPIRIFKNLRVCGDCHNATKYISRISEREIVVRDSNRFHHF 787

Query: 501 EDGSCSCLE 509
           +DG    +E
Sbjct: 788 KDGISKSIE 796



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 180/377 (47%), Gaps = 44/377 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V K  F  DVFV  SL+  YS  G +  A  VF +    DV SWN+MI+G+ +NG     
Sbjct: 147 VFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGA 206

Query: 62  LKLFDKM-------------------PQRNDV--------------------SWNSILGG 82
           L + ++M                    Q +DV                      N+++  
Sbjct: 207 LGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINM 266

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             +FG + DA  VF+QM  R LVSW  +I+ + QN  P  AL  F+ MQ   + P+   +
Sbjct: 267 YSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTV 326

Query: 143 VSLLSACAQLGALDYGNWVYSY-IQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           VSL S  +QL        +  + I+++ +  D ++  AL++MYAK G ++ A  VF    
Sbjct: 327 VSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLP 386

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKS-KGISPDSISYIAVLSACSHLGWVEKGF 260
            KD  ++ + + G   NG + EA + +  M+  +   P+  ++++++ A SH+G +++G 
Sbjct: 387 RKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGM 446

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
              H+    + +  ++    C++DL G+ G LE+A +    +P +  +V W  ++ +  +
Sbjct: 447 -KIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIP-RDTSVPWNAIIASLGI 504

Query: 321 H-RNAEMGQRIGNMLIE 336
           H R  E  Q   +ML E
Sbjct: 505 HGRGEEALQLFKDMLAE 521



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 147/346 (42%), Gaps = 41/346 (11%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL----KLF 65
           ++ +   LI  Y   G +  +R  FD     ++ SWNS+I+ YVR G+  E +    +LF
Sbjct: 53  NIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLF 112

Query: 66  D-----------------------------------KMPQRNDVSWNSILGGLV-RFGSV 89
                                               KM   +DV   + L  L  R+G +
Sbjct: 113 SMCGGGHLRPDFYTFPPILKACVSLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVL 172

Query: 90  DDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
           D A +VF  MP + + SW  +ISGF QNG    AL +   M+   ++ ++  + S+L  C
Sbjct: 173 DVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVC 232

Query: 150 AQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYT 209
           AQ   +  G  ++ ++ K  +  D  +  ALI+MY+K G +  A  VF     +D+ ++ 
Sbjct: 233 AQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWN 292

Query: 210 SAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDV 269
           S I     N     A   F+ M+  GI PD ++ +++ S  S L            +   
Sbjct: 293 SIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRR 352

Query: 270 HGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
             +  ++     +V++  + G +  A      +P K D + W TL+
Sbjct: 353 EWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRK-DTISWNTLV 397



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 132/297 (44%), Gaps = 34/297 (11%)

Query: 33  VFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDA 92
           VF +S +  +V    +IN YV +G+I      FD + ++N  SWNSI+   VRFG   +A
Sbjct: 47  VFGKSQN--IVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEA 104

Query: 93  CRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQL 152
               NQ                           LF       L P+      +L AC  L
Sbjct: 105 MNCVNQ---------------------------LFSMCGGGHLRPDFYTFPPILKACVSL 137

Query: 153 GALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAI 212
             +D G  V+  + K   + D  + A+L+ +Y++ G +D+A +VF     KDV ++ + I
Sbjct: 138 --VD-GKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMI 194

Query: 213 FGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGI 272
            G   NG++  A  +   MK +G+  D+I+  ++L  C+    V  G    H     HG+
Sbjct: 195 SGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGV-LIHLHVLKHGL 253

Query: 273 KPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQR 329
             ++     ++++  + G L++A+     M ++ D V W +++ A   + +     R
Sbjct: 254 DSDVFVSNALINMYSKFGRLQDAQMVFDQMEVR-DLVSWNSIIAAYEQNNDPSTALR 309


>gi|414884091|tpg|DAA60105.1| TPA: hypothetical protein ZEAMMB73_697281 [Zea mays]
          Length = 734

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 198/554 (35%), Positives = 325/554 (58%), Gaps = 49/554 (8%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           M  K++ ++++ ++  L       G +  A  +FDES   DV SWN++++G +R+G   E
Sbjct: 187 MAQKDATSWNIVIRACLQD-----GDLVGATQLFDESSLRDVSSWNTIVSGLMRHGHTTE 241

Query: 61  GLKLFDKMPQRNDVSWNS-------ILGGLV----------------------------- 84
            L    +M  R  V++++        L GL+                             
Sbjct: 242 ALGRLQQMV-RAGVTFSNYTYSMVFALAGLLSSRDLGRQLHGRVVVAVLEEDAFVGCSLM 300

Query: 85  ----RFGSVDDACRVFNQ---MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEP 137
               + G ++ A  +F++     +    +W  +++G+ QNGR +EAL  FR M    +  
Sbjct: 301 DMYCKCGEMESALSIFDRWSDFTEDRQFAWSTMVAGYVQNGREEEALEFFRRMLREGVPA 360

Query: 138 NSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVF 197
              IL S+ SACA  G ++ G  V+ +++K   + D+ L +A++DMY+K GS++ A ++F
Sbjct: 361 GQFILTSVASACANAGMVEQGRQVHGFVEKLGHRFDAPLASAIVDMYSKSGSLEDACRIF 420

Query: 198 HSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVE 257
            S   K+V+ +T+ +   A +G    A E+F  MK++ I P+ I+ +AVLSACSH G V 
Sbjct: 421 RSAQTKNVALWTTMLCSYASHGQGRMALEIFSRMKAEKIMPNEITLVAVLSACSHSGLVS 480

Query: 258 KGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
            G++YF+ M + +GI P  +HY CMVDL GRAGLL++A+NFI    +  + V+W TLL A
Sbjct: 481 DGYHYFNLMQEEYGIVPNTEHYNCMVDLYGRAGLLDKAKNFIEENKISHEAVVWKTLLSA 540

Query: 318 CRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAP 377
           CR+H++ E  Q     L++ +Q   G Y+L+SN+Y    K  +  ++R +M++R++++ P
Sbjct: 541 CRLHKHIEYAQLASEKLVQLEQYDAGSYVLMSNMYATNNKWLDTFKLRSSMKERRVRKQP 600

Query: 378 GCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKE 437
           G S I L  VVH F+A D SH ++ EIY + E++++++K  GY   T  V+ DIEEE++E
Sbjct: 601 GQSWIHLKNVVHRFVALDTSHPRSAEIYAYLEKLMERLKEMGYTSRTDLVVHDIEEEQRE 660

Query: 438 TVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHY 497
           T + +HSEKLA+AFG+I T  G+ +RI KN+R+C DCH A+K +++   R+I +RD   +
Sbjct: 661 TSLKFHSEKLAIAFGIISTPVGTALRIFKNLRVCEDCHEAIKFITRATDREIVVRDLYRF 720

Query: 498 HHFEDGSCSCLEYW 511
           HHF+DG CSC ++W
Sbjct: 721 HHFKDGQCSCEDFW 734



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 157/336 (46%), Gaps = 21/336 (6%)

Query: 8   AYDVFVKNSLIQFYSVCGRVRDAR----WVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           A + FV   +++  +  G V   R    W+       DVV  N++++ Y + G+     +
Sbjct: 123 APNAFVLAGVLRCCAGLGDVESGRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARR 182

Query: 64  LFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEA 123
            F  M Q++  SWN ++   ++ G +  A ++F++   R + SW  ++SG  ++G   EA
Sbjct: 183 AFGAMAQKDATSWNIVIRACLQDGDLVGATQLFDESSLRDVSSWNTIVSGLMRHGHTTEA 242

Query: 124 LALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDM 183
           L   ++M    +  ++     + +    L + D G  ++  +    ++ D+ +  +L+DM
Sbjct: 243 LGRLQQMVRAGVTFSNYTYSMVFALAGLLSSRDLGRQLHGRVVVAVLEEDAFVGCSLMDM 302

Query: 184 YAKCGSIDLAMQVFHSYGD--KDVS-AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           Y KCG ++ A+ +F  + D  +D   A+++ + G   NG   EA E F  M  +G+    
Sbjct: 303 YCKCGEMESALSIFDRWSDFTEDRQFAWSTMVAGYVQNGREEEALEFFRRMLREGVPAGQ 362

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHY------ACMVDLLGRAGLLEE 294
               +V SAC++ G VE+G         VHG   +L H       + +VD+  ++G LE+
Sbjct: 363 FILTSVASACANAGMVEQG-------RQVHGFVEKLGHRFDAPLASAIVDMYSKSGSLED 415

Query: 295 AENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
           A     S   K +  +W T+L +   H    M   I
Sbjct: 416 ACRIFRSAQTK-NVALWTTMLCSYASHGQGRMALEI 450



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 81/149 (54%), Gaps = 2/149 (1%)

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM--QSLDLEPNSAILVSLLSA 148
           +A RVF+  P RSL +W  +ISG A+ GR  + +  F EM  +     PN+ +L  +L  
Sbjct: 76  NAHRVFDGTPTRSLPAWTSIISGCAREGRHADGMRAFAEMLDECGATAPNAFVLAGVLRC 135

Query: 149 CAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAY 208
           CA LG ++ G  ++ +I +  +  D +LC A++DMYAKCG    A + F +   KD +++
Sbjct: 136 CAGLGDVESGRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQKDATSW 195

Query: 209 TSAIFGLAMNGHSIEAFELFENMKSKGIS 237
              I     +G  + A +LF+    + +S
Sbjct: 196 NIVIRACLQDGDLVGATQLFDESSLRDVS 224


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/540 (37%), Positives = 307/540 (56%), Gaps = 39/540 (7%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ 70
           V + N+ I  Y+ CG +  A  VF    D  V SWN++I G+ +NG+  + L L  +M  
Sbjct: 385 VELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTY 444

Query: 71  ----------------------------------RNDVSWN-----SILGGLVRFGSVDD 91
                                             RN +  +     S+L   +  G    
Sbjct: 445 SGQQPDWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASS 504

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           A  +F++M  ++LVSW  +ISG++QNG P E+LALFR+  S  ++ +   +VS+  AC+Q
Sbjct: 505 ARVLFDRMKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQ 564

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSA 211
           L AL  G   + Y+ K     D+ +  ++IDMYAK G I  + +VF    DK+V+++ + 
Sbjct: 565 LSALRLGKEAHGYVLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAI 624

Query: 212 IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG 271
           I    ++GH  EA EL+E MK  G  PD  +YI +L AC H G VE+G  YF  M + + 
Sbjct: 625 IVAHGIHGHGKEAIELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNL 684

Query: 272 IKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIG 331
           I+P+L+HYAC++D+L RAG L++A   +  MP + DN IW +LL +CR     E+G+++ 
Sbjct: 685 IEPKLEHYACLIDMLARAGRLDDALRLVNEMPEEADNRIWSSLLRSCRTFGALEIGEKVA 744

Query: 332 NMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEF 391
             L+E + +    Y+LLSN+Y    K +    VR+ M++  +++  GCS IE+ G V+ F
Sbjct: 745 KKLLELEPDKAENYVLLSNLYAGLGKWDGVRRVRQMMKEIGLQKDAGCSWIEVGGRVYSF 804

Query: 392 LAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAF 451
           + GD    K+ EI   W  + ++I   GY   T SV+ ++ EEEK  ++  HSEKLA++F
Sbjct: 805 VVGDSLQPKSAEIRVIWRRLEERISEIGYKPNTSSVLHEVGEEEKIDILRGHSEKLAISF 864

Query: 452 GLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           GL+ T  G+ +RI KN+RIC+DCH+A KL+SK  +R+I +RD K +HHF DG CSC +YW
Sbjct: 865 GLLKTTKGTTLRIYKNLRICADCHNAAKLISKAVEREIVVRDNKRFHHFRDGLCSCCDYW 924



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 145/284 (51%), Gaps = 43/284 (15%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLF---- 65
           D  +   LI+ Y++CG   D+R VFD  +  +++ WN++++GY RNG   + +K+F    
Sbjct: 78  DYVLNTRLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLV 137

Query: 66  -DKMPQRNDVSWNSIL---GGLV--------------------------------RFGSV 89
            D   Q ++ ++ S++   GG++                                + G+V
Sbjct: 138 SDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAV 197

Query: 90  DDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD-LEPNSAILVSLLSA 148
           D+A +VF+ MP+ +LVSW  +I  F++NG  +++  L  EM   + L P+   +V++L  
Sbjct: 198 DEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPV 257

Query: 149 CAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAY 208
           CA  G +D G  ++    K  +  + ++  A++ MY+KCG ++ A   F    +K+V ++
Sbjct: 258 CAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSW 317

Query: 209 TSAIFGLAMNGHSIEAFELFENMKSKG--ISPDSISYIAVLSAC 250
            + I   ++ G   EAF L + M+ +G  +  + ++ + VL AC
Sbjct: 318 NTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPAC 361



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 142/301 (47%), Gaps = 43/301 (14%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNG---- 56
           MV+K     DVFV N+L+  Y  CG V +A  VFD   + ++VSWNSMI  +  NG    
Sbjct: 171 MVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRD 230

Query: 57  ------EIL--EGL---------------------------KLFDKMPQRNDVSWNSILG 81
                 E+L  EGL                            L  K+    +V  N+ + 
Sbjct: 231 SFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMV 290

Query: 82  GLV-RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQ--SLDLEPN 138
            +  + G +++A   F +   +++VSW  +IS F+  G   EA  L +EMQ    +++ N
Sbjct: 291 YMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKAN 350

Query: 139 SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH 198
              ++++L AC     L     ++ Y  + C +    L  A I  YAKCG+++ A +VFH
Sbjct: 351 EVTILNVLPACLDKLQLRSLKELHGYSFRHCFQ-HVELSNAFILAYAKCGALNSAEKVFH 409

Query: 199 SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEK 258
             GDK VS++ + I G A NG   +A  L   M   G  PD  +  ++L AC+HL  ++ 
Sbjct: 410 GIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQY 469

Query: 259 G 259
           G
Sbjct: 470 G 470



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 133/256 (51%), Gaps = 7/256 (2%)

Query: 66  DKMPQRNDVSWNSILGGLVRF-GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEAL 124
           D    RND   N+ L  +    GS  D+  VF+ M  ++L+ W  L+SG+ +NG   + +
Sbjct: 71  DSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALVSGYTRNGLYGDVV 130

Query: 125 ALFREMQS-LDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDM 183
            +F ++ S  D +P++    S++ AC  +  +  G  ++  + K  + LD  +  AL+ M
Sbjct: 131 KVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGM 190

Query: 184 YAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELF-ENMKSKGISPDSIS 242
           Y KCG++D AM+VF    + ++ ++ S I   + NG S ++F+L  E +  +G+ PD ++
Sbjct: 191 YGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVT 250

Query: 243 YIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM 302
            + +L  C+  G V+ G    H +    G+  E+     MV +  + G L EA+  ++ +
Sbjct: 251 VVTILPVCAGEGEVDIGM-GIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQ--MSFV 307

Query: 303 PMKPDNVI-WGTLLGA 317
                NV+ W T++ A
Sbjct: 308 KNNNKNVVSWNTMISA 323



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 108/237 (45%), Gaps = 44/237 (18%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V++N    D FV  SL+  Y  CG+   AR +FD   D ++VSWN+MI+GY +NG   E 
Sbjct: 477 VLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQNGLPYES 536

Query: 62  LKLFDKM----PQRNDVSWNSILGGLVRF------------------------------- 86
           L LF K      Q ++++  S+ G   +                                
Sbjct: 537 LALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKALQTEDAFVGCSIIDM 596

Query: 87  ----GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
               G + ++ +VF+ +  +++ SW  +I     +G  KEA+ L+  M+ +   P+    
Sbjct: 597 YAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGIHGHGKEAIELYERMKKVGQMPDRFTY 656

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCI---KLDSILCAALIDMYAKCGSIDLAMQV 196
           + +L AC   G ++ G   +  +Q   +   KL+   C  LIDM A+ G +D A+++
Sbjct: 657 IGILMACGHAGLVEEGLKYFKEMQNFNLIEPKLEHYAC--LIDMLARAGRLDDALRL 711



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 91/181 (50%), Gaps = 16/181 (8%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K     D FV  S+I  Y+  G ++++R VFD   D +V SWN++I  +  +G   E 
Sbjct: 578 VLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGIHGHGKEA 637

Query: 62  LKLFDKMPQRNDV----SWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLIS 112
           ++L+++M +   +    ++  IL      G V++  + F +M   +L+      +  LI 
Sbjct: 638 IELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLIEPKLEHYACLID 697

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKL 172
             A+ GR  +AL L  EM     E ++ I  SLL +C   GAL+ G  V     KK ++L
Sbjct: 698 MLARAGRLDDALRLVNEMPE---EADNRIWSSLLRSCRTFGALEIGEKV----AKKLLEL 750

Query: 173 D 173
           +
Sbjct: 751 E 751


>gi|23617093|dbj|BAC20776.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
          Length = 681

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/494 (40%), Positives = 295/494 (59%), Gaps = 32/494 (6%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + VK   A D+FV+N+L+ FY V G V   R                             
Sbjct: 171 LAVKAGAAGDLFVRNALVHFYGVSGDVGAMR----------------------------- 201

Query: 61  GLKLFDKMPQRNDV-SWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGR 119
             ++FD++P+  DV +WN +L G VR G +  A  VF++MP R  +SW  L+ G+ +   
Sbjct: 202 --RVFDELPRVRDVLTWNEVLAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEE 259

Query: 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
            + AL +FR M    + PN A +V+ LSA A+LG L++G +V++ +Q+  + +   + AA
Sbjct: 260 LEVALGVFRNMVEQGVRPNQAAVVTALSAAARLGLLEHGKFVHNVVQRSGMPVCMNVGAA 319

Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
           L+DMYAKCG + +A +VF     +DV A+ + I GLA +G   +A ELFE   S+G+SP 
Sbjct: 320 LVDMYAKCGCVAVAREVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPT 379

Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI 299
           +++++ VL+ CS  G V +G  YF  + + + I+PE++HY CMVDLLGRAGL+ EA   I
Sbjct: 380 NVTFVGVLNGCSRSGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELI 439

Query: 300 ASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGE 359
             M + PD V+WGT+L +C+ H   ++G  +GN LIE D  H G Y+LLS IY +  K +
Sbjct: 440 EGMHIAPDPVLWGTILSSCKTHGLVDLGVSVGNKLIELDPTHSGYYVLLSGIYAKANKWD 499

Query: 360 NAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYG 419
              EVRK M  R   ++ G SL+E  G VH+FL GD  H+ + +IY   + I K++   G
Sbjct: 500 EVREVRKLMSSRGTNKSAGWSLMEAHGKVHKFLVGDTYHKDSVQIYDTLDMINKRLTEAG 559

Query: 420 YNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMK 479
           Y  +  SV+ DI EEEK   +  HSE+LA+A+G I  + GS IRIVKN+R+C DCH   K
Sbjct: 560 YVPDVSSVLHDIGEEEKVHAVKVHSERLAIAYGFIVLEAGSPIRIVKNLRVCGDCHEFSK 619

Query: 480 LVSKVFKRKISIRD 493
           +V+ VF+R+I +RD
Sbjct: 620 MVTMVFQREIIVRD 633


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 203/551 (36%), Positives = 310/551 (56%), Gaps = 42/551 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +K+    ++FV N LI  Y+  G ++D + VFD     D++SWNS+I  Y  N + L  +
Sbjct: 274 IKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAI 333

Query: 63  KLFDKM-------------------PQRNDV-------------SW--------NSILGG 82
            LF +M                    Q  ++              W        N+++  
Sbjct: 334 LLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVM 393

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFR--EMQSLDLEPNSA 140
             + G VD A  VFN +P + ++SW  +ISG+AQNG   EA+ ++   E +  ++  N  
Sbjct: 394 YAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQG 453

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
             VS+L AC+Q GAL  G  ++  + K  + LD  +  +L DMY KCG +D A+ +F+  
Sbjct: 454 TWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQI 513

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
              +   + + I     +GH  +A  LF+ M  +G+ PD I+++ +LSACSH G V++G 
Sbjct: 514 PRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGE 573

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
           + F  M   +GI P L HY CMVDL GRAG LE A NFI SMP++PD  IWG LL ACRV
Sbjct: 574 WCFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEIALNFIKSMPLQPDASIWGALLSACRV 633

Query: 321 HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS 380
           H N ++G+     L E +  H G ++LLSN+Y    K E  +E+R     + +++ PG S
Sbjct: 634 HGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSITSGKGLRKTPGWS 693

Query: 381 LIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVI 440
            +E+D  V  F  G+++H   +E+Y+    + +K+K  GY  + R V+ D+E++EKE ++
Sbjct: 694 SMEVDNKVEVFYTGNQTHPMYEEMYRELTALHEKLKMVGYVPDHRFVLQDVEDDEKEHIL 753

Query: 441 GYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF 500
             HSE+LA+AF LI T   + IRI KN+R+C DCHS  K +SK+ +R+I +RD   +HHF
Sbjct: 754 MSHSERLAMAFALITTPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHF 813

Query: 501 EDGSCSCLEYW 511
           ++G CSC +YW
Sbjct: 814 KNGVCSCGDYW 824



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 109/363 (30%), Positives = 180/363 (49%), Gaps = 40/363 (11%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + +K  F +DV+V  SLI  Y   G V +AR +FDE    D+ SWN+MI+GY ++G   E
Sbjct: 175 LALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKE 234

Query: 61  GLKLFDKMPQRNDVSWNSILGGLV-----------------------------------R 85
            L L D +   + V+  S+L                                        
Sbjct: 235 ALTLSDGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAE 294

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
           FGS+ D  +VF++M  R L+SW  +I  +  N +P  A+ LF+EM+   ++P+   L+SL
Sbjct: 295 FGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISL 354

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCA-ALIDMYAKCGSIDLAMQVFHSYGDKD 204
            S  +QLG +     V  +  +K   L+ I    A++ MYAK G +D A  VF+   +KD
Sbjct: 355 ASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKD 414

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKG--ISPDSISYIAVLSACSHLGWVEKGFYY 262
           V ++ + I G A NG + EA E++  M+ +G  IS +  ++++VL ACS  G + +G   
Sbjct: 415 VISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGM-K 473

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
            H     +G+  ++     + D+ G+ G L++A +    +P + ++V W TL+     H 
Sbjct: 474 LHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIP-RVNSVPWNTLIACHGFHG 532

Query: 323 NAE 325
           + E
Sbjct: 533 HGE 535


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/511 (37%), Positives = 295/511 (57%), Gaps = 30/511 (5%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++   AY+  V N+LI  Y+  G V +AR + D+S + D+                   
Sbjct: 217 ILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDL------------------- 257

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
                     N +S+ ++L G V+ G ++ A  +F  M  R +V+W  +I G+ QNGR  
Sbjct: 258 ----------NVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRND 307

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
           EA+ LFR M +   EPNS  L ++LS CA L  LDYG  ++    +  ++  S +  A+I
Sbjct: 308 EAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAII 367

Query: 182 DMYAKCGSIDLAMQVFHSYG-DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
            MYA+ GS   A ++F      K+   +TS I  LA +G   EA  LFE M   G+ PD 
Sbjct: 368 TMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDR 427

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
           I+Y+ VLSACSH G+V +G  Y+  + + H I PE+ HYACMVDLL RAGL  EA+ FI 
Sbjct: 428 ITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIR 487

Query: 301 SMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGEN 360
            MP++PD + WG+LL ACRVH+NAE+ +     L+  D N+ G Y  ++N+Y    +  +
Sbjct: 488 RMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSD 547

Query: 361 AEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGY 420
           A  + K  +++ +++  G S   +   +H F A D  H +   +Y     + ++IK  G+
Sbjct: 548 AARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEEIKGAGF 607

Query: 421 NVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKL 480
             + +SV+ D+++E KE ++  HSEKLA+AFGLI T   + +R++KN+R+C+DCH+A+K 
Sbjct: 608 VPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCNDCHAAIKA 667

Query: 481 VSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           +SKV  R+I +RD   +HHF DG CSC +YW
Sbjct: 668 ISKVTDREIIVRDATRFHHFRDGLCSCKDYW 698



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 154/341 (45%), Gaps = 68/341 (19%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           NS++N Y + G+      +F++MP R+  SWN+++      G +D A  +F  MP RS+V
Sbjct: 97  NSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIV 156

Query: 106 SWVVLISGFAQNGRPKEALALF-REMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSY 164
           SW  +I+G+ QNG   +AL LF R +    + P+   + S+LSACA LG +  G  V++Y
Sbjct: 157 SWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAY 216

Query: 165 IQKKCIKLDSILCAALIDMYAKCGSIDLAMQV---------------------------- 196
           I +  +  +S +  ALI  YAK GS++ A ++                            
Sbjct: 217 ILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDME 276

Query: 197 -----FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS 251
                F    ++DV A+T+ I G   NG + EA +LF +M + G  P+S +  AVLS C+
Sbjct: 277 SAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCA 336

Query: 252 HLGWVEKG-------------------------------FYYFHSMFDVHGIKPELDHYA 280
            L  ++ G                               F +   MFD    + E   + 
Sbjct: 337 SLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWT 396

Query: 281 CMVDLLGRAGLLEEAENFIASM---PMKPDNVIWGTLLGAC 318
            M+  L + G  EEA      M    ++PD + +  +L AC
Sbjct: 397 SMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSAC 437



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 96/209 (45%), Gaps = 32/209 (15%)

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G + DA  VF +MP+R  VSW V++ G  + GR  EA+    +M +    P    L
Sbjct: 2   FAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTL 61

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS------------- 189
            ++LS+CA   A   G  V+S++ K  +     +  ++++MY KCG              
Sbjct: 62  TNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPV 121

Query: 190 ------------------IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM 231
                             +DLA  +F S  D+ + ++ + I G   NG   +A +LF  M
Sbjct: 122 RSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRM 181

Query: 232 -KSKGISPDSISYIAVLSACSHLGWVEKG 259
                ++PD  +  +VLSAC++LG V  G
Sbjct: 182 LHESSMAPDEFTITSVLSACANLGNVRIG 210



 Score = 46.2 bits (108), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)

Query: 183 MYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSIS 242
           M+AK G +  A  VF    ++D  ++T  + GL   G   EA +   +M + G +P   +
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60

Query: 243 YIAVLSAC--SHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
              VLS+C  +  G V +  + F     +    P  +    ++++ G+ G  E A     
Sbjct: 61  LTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANS---VLNMYGKCGDSETATTVFE 117

Query: 301 SMPMK 305
            MP++
Sbjct: 118 RMPVR 122


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 203/541 (37%), Positives = 305/541 (56%), Gaps = 39/541 (7%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DV V  +LI+ Y  CG +  AR VFD+    DVVSW  MI GY  N  I +   LF  M 
Sbjct: 297 DVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQ 356

Query: 70  ----QRNDVSWNSILGG-----------------------------------LVRFGSVD 90
               Q + +++  I+                                       + G++ 
Sbjct: 357 EEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIK 416

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           DA +VF+ M +R +VSW  +I  + +NG  +EA   F  M+  ++EP+    ++LL+AC 
Sbjct: 417 DARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACG 476

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
            LGALD G  +Y+   K  +     +  ALI+M  K GSI+ A  +F +   +DV  +  
Sbjct: 477 HLGALDLGMEIYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFENMVQRDVVTWNV 536

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I G +++G++ EA +LF+ M  +   P+S++++ VLSACS  G+VE+G  +F  + D  
Sbjct: 537 MIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLDGR 596

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
           GI P ++ Y CMVDLLGRAG L+EAE  I  MP+KP++ IW TLL ACR++ N ++ +R 
Sbjct: 597 GIVPTMELYGCMVDLLGRAGELDEAELLINRMPLKPNSSIWSTLLAACRIYGNLDVAERA 656

Query: 331 GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHE 390
               + S+      Y+ LS++Y      EN  +VRK M  R +++  GC+ IE++G +H 
Sbjct: 657 AERCLMSEPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGVRKEQGCTWIEVEGKLHT 716

Query: 391 FLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALA 450
           F+  DRSH +  EIY     ++  IK  GY   T++V+ ++ E+EKE  I YHSEKLA+A
Sbjct: 717 FVVEDRSHPQAGEIYAELARLMTAIKREGYIPVTQNVLHNVGEQEKEEAISYHSEKLAIA 776

Query: 451 FGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEY 510
           +G++    G+ IRI KN+R+C DCHSA K +SKV  R+I  RD   +HHF++G CSC +Y
Sbjct: 777 YGVLSLPSGAPIRIFKNLRVCGDCHSASKFISKVTGREIIARDASRFHHFKNGVCSCGDY 836

Query: 511 W 511
           W
Sbjct: 837 W 837



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 99/355 (27%), Positives = 173/355 (48%), Gaps = 41/355 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++++    +++  N+LI+ +S+CG + +AR  FD  ++  VV+WN++I GY + G + E 
Sbjct: 87  IIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEA 146

Query: 62  LKLFDKM--------------------------------PQRNDVSW-------NSILGG 82
             LF +M                                 Q   V +        +++  
Sbjct: 147 FALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSM 206

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
            V+ GS+D A +VF+ + KR + ++ V+I G+A++G  ++A  LF  MQ    +PN    
Sbjct: 207 YVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISF 266

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           +S+L  C+   AL +G  V++      +  D  +  ALI MY  CGSI+ A +VF     
Sbjct: 267 LSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKV 326

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           +DV ++T  I G A N +  +AF LF  M+ +GI PD I+YI +++AC+    +      
Sbjct: 327 RDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLA-RE 385

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
            HS     G   +L     +V +  + G +++A     +M  + D V W  ++GA
Sbjct: 386 IHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRR-DVVSWSAMIGA 439



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 111/233 (47%), Gaps = 42/233 (18%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VV+  F  D+ V  +L+  Y+ CG ++DAR VFD     DVVSW++MI  YV NG   E 
Sbjct: 390 VVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEA 449

Query: 62  LKLFDKMPQRNDVSWNSI-----------LGGL--------------------------- 83
            + F  M +RN+V  + +           LG L                           
Sbjct: 450 FETFHLM-KRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGNALIN 508

Query: 84  --VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
             V+ GS++ A  +F  M +R +V+W V+I G++ +G  +EAL LF  M      PNS  
Sbjct: 509 MNVKHGSIERARYIFENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVT 568

Query: 142 LVSLLSACAQLGALDYGNWVYSY-IQKKCIKLDSILCAALIDMYAKCGSIDLA 193
            V +LSAC++ G ++ G   +SY +  + I     L   ++D+  + G +D A
Sbjct: 569 FVGVLSACSRAGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGELDEA 621



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 2/180 (1%)

Query: 138 NSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVF 197
           +S   V L   C  L     G  V  +I +   +L+      LI +++ CG++  A Q F
Sbjct: 60  DSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTF 119

Query: 198 HSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVE 257
            S  +K V  + + I G A  GH  EAF LF  M  + + P  I+++ VL ACS    ++
Sbjct: 120 DSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLK 179

Query: 258 KGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
            G   FH+     G   +      +V +  + G ++ A      +  K D   +  ++G 
Sbjct: 180 LG-KEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGL-YKRDVSTFNVMIGG 237


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/511 (37%), Positives = 295/511 (57%), Gaps = 30/511 (5%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++   AY+  V N+LI  Y+  G V +AR + D+S + D+                   
Sbjct: 323 ILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDL------------------- 363

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
                     N +S+ ++L G V+ G ++ A  +F  M  R +V+W  +I G+ QNGR  
Sbjct: 364 ----------NVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRND 413

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
           EA+ LFR M +   EPNS  L ++LS CA L  LDYG  ++    +  ++  S +  A+I
Sbjct: 414 EAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAII 473

Query: 182 DMYAKCGSIDLAMQVFHSYG-DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
            MYA+ GS   A ++F      K+   +TS I  LA +G   EA  LFE M   G+ PD 
Sbjct: 474 TMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDR 533

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
           I+Y+ VLSACSH G+V +G  Y+  + + H I PE+ HYACMVDLL RAGL  EA+ FI 
Sbjct: 534 ITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIR 593

Query: 301 SMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGEN 360
            MP++PD + WG+LL ACRVH+NAE+ +     L+  D N+ G Y  ++N+Y    +  +
Sbjct: 594 RMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSD 653

Query: 361 AEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGY 420
           A  + K  +++ +++  G S   +   +H F A D  H +   +Y     + ++IK  G+
Sbjct: 654 AARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEEIKGAGF 713

Query: 421 NVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKL 480
             + +SV+ D+++E KE ++  HSEKLA+AFGLI T   + +R++KN+R+C+DCH+A+K 
Sbjct: 714 VPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCNDCHAAIKA 773

Query: 481 VSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           +SKV  R+I +RD   +HHF DG CSC +YW
Sbjct: 774 ISKVTDREIIVRDATRFHHFRDGLCSCKDYW 804



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 154/341 (45%), Gaps = 68/341 (19%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           NS++N Y + G+      +F++MP R+  SWN+++      G +D A  +F  MP RS+V
Sbjct: 203 NSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIV 262

Query: 106 SWVVLISGFAQNGRPKEALALF-REMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSY 164
           SW  +I+G+ QNG   +AL LF R +    + P+   + S+LSACA LG +  G  V++Y
Sbjct: 263 SWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAY 322

Query: 165 IQKKCIKLDSILCAALIDMYAKCGSIDLAMQV---------------------------- 196
           I +  +  +S +  ALI  YAK GS++ A ++                            
Sbjct: 323 ILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDME 382

Query: 197 -----FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS 251
                F    ++DV A+T+ I G   NG + EA +LF +M + G  P+S +  AVLS C+
Sbjct: 383 SAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCA 442

Query: 252 HLGWVEKG-------------------------------FYYFHSMFDVHGIKPELDHYA 280
            L  ++ G                               F +   MFD    + E   + 
Sbjct: 443 SLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWT 502

Query: 281 CMVDLLGRAGLLEEAENFIASM---PMKPDNVIWGTLLGAC 318
            M+  L + G  EEA      M    ++PD + +  +L AC
Sbjct: 503 SMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSAC 543



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 115/238 (48%), Gaps = 34/238 (14%)

Query: 56  GEILEGLKLFDKMP--QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISG 113
           G + +  +LFD++P  +RN  +WNS+L    + G + DA  VF +MP+R  VSW V++ G
Sbjct: 79  GGLRDARRLFDEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVG 138

Query: 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD 173
             + GR  EA+    +M +    P    L ++LS+CA   A   G  V+S++ K  +   
Sbjct: 139 LNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSC 198

Query: 174 SILCAALIDMYAKCGS-------------------------------IDLAMQVFHSYGD 202
             +  ++++MY KCG                                +DLA  +F S  D
Sbjct: 199 VPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPD 258

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENM-KSKGISPDSISYIAVLSACSHLGWVEKG 259
           + + ++ + I G   NG   +A +LF  M     ++PD  +  +VLSAC++LG V  G
Sbjct: 259 RSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIG 316


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/511 (37%), Positives = 295/511 (57%), Gaps = 30/511 (5%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++   AY+  V N+LI  Y+  G V +AR + D+S + D+                   
Sbjct: 323 ILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDL------------------- 363

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
                     N +S+ ++L G V+ G ++ A  +F  M  R +V+W  +I G+ QNGR  
Sbjct: 364 ----------NVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRND 413

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
           EA+ LFR M +   EPNS  L ++LS CA L  LDYG  ++    +  ++  S +  A+I
Sbjct: 414 EAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLERSSSVSNAII 473

Query: 182 DMYAKCGSIDLAMQVFHSYG-DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
            MYA+ GS   A ++F      K+   +TS I  LA +G   EA  LFE M   G+ PD 
Sbjct: 474 TMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDR 533

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
           I+Y+ VLSACSH G+V +G  Y+  + + H I PE+ HYACMVDLL RAGL  EA+ FI 
Sbjct: 534 ITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIR 593

Query: 301 SMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGEN 360
            MP++PD + WG+LL ACRVH+NAE+ +     L+  D N+ G Y  ++N+Y    +  +
Sbjct: 594 RMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSD 653

Query: 361 AEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGY 420
           A  + K  +++ +++  G S   +   +H F A D  H +   +Y     + ++IK  G+
Sbjct: 654 AARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEEIKGAGF 713

Query: 421 NVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKL 480
             + +SV+ D+++E KE ++  HSEKLA+AFGLI T   + +R++KN+R+C+DCH+A+K 
Sbjct: 714 VPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCNDCHAAIKA 773

Query: 481 VSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           +SKV  R+I +RD   +HHF DG CSC +YW
Sbjct: 774 ISKVTDREIIVRDATRFHHFRDGLCSCKDYW 804



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 99/341 (29%), Positives = 155/341 (45%), Gaps = 68/341 (19%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           NS++N Y + G+      +F++MP R+  SWN+++      G +D A  +F  MP RS+V
Sbjct: 203 NSVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIV 262

Query: 106 SWVVLISGFAQNGRPKEALALF-REMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSY 164
           SW  +I+G+ QNG   +AL LF R +    + P+   + S+LSACA LG +  G  V++Y
Sbjct: 263 SWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAY 322

Query: 165 IQKKCIKLDSILCAALIDMYAKCGSI-------------DL------------------- 192
           I +  +  +S +  ALI  YAK GS+             DL                   
Sbjct: 323 ILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDME 382

Query: 193 -AMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS 251
            A ++F    ++DV A+T+ I G   NG + EA +LF +M + G  P+S +  AVLS C+
Sbjct: 383 SAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCA 442

Query: 252 HLGWVEKG-------------------------------FYYFHSMFDVHGIKPELDHYA 280
            L  ++ G                               F +   MFD    + E   + 
Sbjct: 443 SLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWT 502

Query: 281 CMVDLLGRAGLLEEAENFIASM---PMKPDNVIWGTLLGAC 318
            M+  L + G  EEA      M    ++PD + +  +L AC
Sbjct: 503 SMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSAC 543



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 149/325 (45%), Gaps = 14/325 (4%)

Query: 56  GEILEGLKLFDKMP--QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISG 113
           G + +  +LFD++P  +RN  +WNS+L    + G + DA  VF +MP+R  VSW V++ G
Sbjct: 79  GGLRDARRLFDEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVG 138

Query: 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD 173
             + GR  EA+    +M +    P    L ++LS+CA   A   G  V+S++ K  +   
Sbjct: 139 LNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSC 198

Query: 174 SILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKS 233
             +  ++++MY KCG  + A  VF     + VS++ + +      G    A  LFE+M  
Sbjct: 199 VPVANSVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPG 258

Query: 234 KGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL-----LGR 288
           + I    +S+ A+++  +  G   K    F  M     + P  D +     L     LG 
Sbjct: 259 RSI----VSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAP--DEFTITSVLSACANLGN 312

Query: 289 AGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILL 348
             + ++   +I    M  ++ +   L+       + E  +RI +  +E+D N      LL
Sbjct: 313 VRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALL 372

Query: 349 SNIYVETLKGENAEEVRKTMRKRKI 373
              YV+    E+A E+   M  R +
Sbjct: 373 EG-YVKIGDMESAREMFGVMNNRDV 396


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/548 (36%), Positives = 325/548 (59%), Gaps = 39/548 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +K+   +  +VKN+LI  YS    V+ A  V+ E   LDV S+N +ING + NG   E L
Sbjct: 156 LKSGLVFHQYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLENGYPSEAL 215

Query: 63  KLFDKMPQ----------------------------------RNDVSWNSILGGLV---- 84
           ++ D+M                                    R    ++S +   +    
Sbjct: 216 EVLDRMVDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEYDSFVSSAIIDMY 275

Query: 85  -RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
            + G++ +A +VFN++  +++VSW  +++ ++QNG  +EAL  F EM+   L PN     
Sbjct: 276 GKCGNILNARKVFNRLQTKNVVSWTAILAAYSQNGCFEEALNFFPEMEVDGLLPNEYTFA 335

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
            LL++CA + AL +G  +++ I+K   +   I+  ALI+MY+K GSI+ A +VF     +
Sbjct: 336 VLLNSCAGISALGHGKLLHTRIKKSGFEDHIIVGNALINMYSKSGSIEAAHKVFLEMICR 395

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           D   +++ I GL+ +G   EA  +F+ M +    P  ++++ VLSAC+HLG V++GFYY 
Sbjct: 396 DSITWSAMICGLSHHGLGREALVVFQEMLAAKECPHYVTFVGVLSACAHLGSVQEGFYYL 455

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
           + +    GI+P ++HY C+V LL +AG L+EAENF+ S P+K D V W TLL AC VH+N
Sbjct: 456 NQLMKQTGIEPGVEHYTCIVGLLCKAGRLDEAENFMKSTPVKWDVVAWRTLLSACHVHQN 515

Query: 324 AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE 383
             +G+++  ++++ D    G YILLSN+Y +  + +   ++RK MR+R +K+ PG S IE
Sbjct: 516 YGLGKKVAELVLQMDPGDVGTYILLSNMYAKAKRWDGVVKIRKLMRERNVKKEPGASWIE 575

Query: 384 LDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYH 443
           +   +H F++  ++H ++ +IY+  +E++  I+  GY  +  +V  D+E+E+K   + YH
Sbjct: 576 IRNSIHVFVSEGKTHPESNQIYEKVQELLTMIRPMGYVPDIAAVFHDVEDEQKREYVSYH 635

Query: 444 SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
           SEKLA+A+GL+ T  G+ IR++KN+R+C DCHSA+KL+SKV  R I +RD   +H F DG
Sbjct: 636 SEKLAIAYGLMKTPSGAPIRVIKNLRMCVDCHSAVKLISKVTNRMIIVRDANRFHCFGDG 695

Query: 504 SCSCLEYW 511
            CSC +YW
Sbjct: 696 GCSCADYW 703



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 165/356 (46%), Gaps = 43/356 (12%)

Query: 1   MVVKNSFAYDVFVK-NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEIL 59
           +++ N    D  V+ NSLI  Y+ C ++  AR +FD     +VVSW +++ GY  NG +L
Sbjct: 51  LIITNQATKDNIVQVNSLINLYAKCDQIMVARILFDGMRKRNVVSWGALMAGYFHNGLVL 110

Query: 60  EGLKLFDKM-----PQRNDVSWNSIL---------------------GGLV--------- 84
           E L+LF  M      + N+  + +I+                      GLV         
Sbjct: 111 EVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEGWQCHGYALKSGLVFHQYVKNAL 170

Query: 85  -----RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS 139
                R   V  A  V+ ++P   + S+ ++I+G  +NG P EAL +   M    +  ++
Sbjct: 171 ICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLENGYPSEALEVLDRMVDECIVWDN 230

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
              V+    C+ L  L  G  V+  + +   + DS + +A+IDMY KCG+I  A +VF+ 
Sbjct: 231 VTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEYDSFVSSAIIDMYGKCGNILNARKVFNR 290

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
              K+V ++T+ +   + NG   EA   F  M+  G+ P+  ++  +L++C+ +  +  G
Sbjct: 291 LQTKNVVSWTAILAAYSQNGCFEEALNFFPEMEVDGLLPNEYTFAVLLNSCAGISALGHG 350

Query: 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
               H+     G +  +     ++++  ++G +E A      M  + D++ W  ++
Sbjct: 351 -KLLHTRIKKSGFEDHIIVGNALINMYSKSGSIEAAHKVFLEMICR-DSITWSAMI 404



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 126/259 (48%), Gaps = 7/259 (2%)

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
           L + ++  + N V  NS++    +   +  A  +F+ M KR++VSW  L++G+  NG   
Sbjct: 51  LIITNQATKDNIVQVNSLINLYAKCDQIMVARILFDGMRKRNVVSWGALMAGYFHNGLVL 110

Query: 122 EALALFREMQSLD-LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
           E L LF+ M S+D + PN  I  +++S+C+  G +  G   + Y  K  +     +  AL
Sbjct: 111 EVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEGWQCHGYALKSGLVFHQYVKNAL 170

Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           I MY++   +  AM V++     DV +Y   I GL  NG+  EA E+ + M  + I  D+
Sbjct: 171 ICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLENGYPSEALEVLDRMVDECIVWDN 230

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHY--ACMVDLLGRAGLLEEAENF 298
           ++Y+     CSHL  +  G      MF       E D +  + ++D+ G+ G +  A   
Sbjct: 231 VTYVTAFGLCSHLKDLRLGLQVHCRMFRT---GAEYDSFVSSAIIDMYGKCGNILNARKV 287

Query: 299 IASMPMKPDNVIWGTLLGA 317
              +  K + V W  +L A
Sbjct: 288 FNRLQTK-NVVSWTAILAA 305


>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
           [Solanum demissum]
          Length = 819

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 197/551 (35%), Positives = 316/551 (57%), Gaps = 40/551 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + +K S+ +D+FV N+L+ FYS    +  A+ +FDE  +LD VS+N +I GY  NG+  +
Sbjct: 269 LAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEK 328

Query: 61  GLKLFDKMP----QRNDVSWNSILG------------------------GLVRFGSV--- 89
              LF ++      R +  + ++L                           V+ G+    
Sbjct: 329 SFDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVSEVQVGNALVD 388

Query: 90  --------DDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
                   +DA R+F  +  R+ V W  +IS + Q G  +EAL +F+EM   ++  + A 
Sbjct: 389 MYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMNRENVHGDQAT 448

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
             S L A A L ++  G  ++S + +  +       + L+DMYA CGS+  A++VF    
Sbjct: 449 FASTLKASANLASVSLGKQLHSSVIRLGLLSSVFSGSVLVDMYANCGSMKDAIEVFKEMP 508

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
           D+++  + + I   + NG +   F  F +M   G+ PDS+S+++VL+ACSH G VEK  +
Sbjct: 509 DRNIVCWNALISAYSQNGDAEATFSSFADMIESGLYPDSVSFLSVLTACSHRGLVEKALW 568

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           YF+SM  V+ + P   HYA M+D+L R+G   EAEN I+ MP +PD V+W ++L +CR+H
Sbjct: 569 YFNSMTQVYKLDPRRKHYATMIDVLCRSGRFNEAENLISEMPFEPDEVMWSSVLNSCRIH 628

Query: 322 RNAEMGQRIGNMLIESDQNHD-GRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS 380
           +N ++ ++  + L + D   D   Y+ +SNIY E  K ENA +V+K MR+R +K+    S
Sbjct: 629 KNQDLAKKAADQLFKMDALRDAAAYVNMSNIYAEAGKWENAAKVKKAMRERGVKKVTAYS 688

Query: 381 LIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVI 440
            +E+D  VH F A DR+H +T++I +    +V+ +   GY  +T   + +++EE K   +
Sbjct: 689 WVEIDHRVHVFTANDRTHPQTEQIRRKINSLVELMDKEGYKPDTSCTLQNVDEEMKIESL 748

Query: 441 GYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF 500
            YHSE+LA+AF LI T  GS I I+KN+R C DCH+A+K++SK+  R+I++RD   +HHF
Sbjct: 749 KYHSERLAIAFALINTPEGSPIIIMKNLRACVDCHAAIKVISKIVGREITVRDSSRFHHF 808

Query: 501 EDGSCSCLEYW 511
            DGSCSC +YW
Sbjct: 809 RDGSCSCGDYW 819



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 106/209 (50%)

Query: 39  DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQ 98
           D ++  +N  +   VR  +I +  +LFD+MP RN  S N ++ G V+  ++  A  +F  
Sbjct: 43  DPEISRFNFKLKDLVRANQIAKARQLFDEMPYRNTSSVNMMVSGYVKSRNLFRARELFES 102

Query: 99  MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
           M  R+ VSW ++I G++QN +PKEA  L+ EM    ++P+     +LLS       L   
Sbjct: 103 MFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSGVKPDHITFATLLSGFDDTTTLKEV 162

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
             ++S+I +       I+  +L+D Y K   +D+A Q+F     KD  ++   I G    
Sbjct: 163 LQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSFNVMITGYTKY 222

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVL 247
           G   EA +LF  M++    P   ++ A+L
Sbjct: 223 GFREEALKLFMQMRNMDFQPSGFTFAAML 251



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/385 (22%), Positives = 159/385 (41%), Gaps = 72/385 (18%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +VK  F  ++   N  ++      ++  AR +FDE    +  S N M++GYV++  +   
Sbjct: 37  IVKTGFDPEISRFNFKLKDLVRANQIAKARQLFDEMPYRNTSSVNMMVSGYVKSRNLFRA 96

Query: 62  LKLFDKMPQRNDVSWNSILGG--------------------------------------- 82
            +LF+ M  RN+VSW  ++GG                                       
Sbjct: 97  RELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSGVKPDHITFATLLSGFDDT 156

Query: 83  ------------LVRFGS----------VDDACR---------VFNQMPKRSLVSWVVLI 111
                       ++RFG           VD  C+         +F++MP +  VS+ V+I
Sbjct: 157 TTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSFNVMI 216

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK 171
           +G+ + G  +EAL LF +M+++D +P+     ++L        + +G  ++    K    
Sbjct: 217 TGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSEDVIFGQQIHGLAIKTSYV 276

Query: 172 LDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM 231
            D  +  AL+D Y+K   IDLA  +F    + D  +Y   I G A NG   ++F+LF+ +
Sbjct: 277 WDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLFKRL 336

Query: 232 KSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGL 291
           +       +  +  +LS  +    +  G    H+   V     E+     +VD+  +   
Sbjct: 337 QGTSFDRKNFPFATMLSVAAIELNLSMG-RQTHAQAVVTTAVSEVQVGNALVDMYAKCEK 395

Query: 292 LEEAENFIASMPMKPDNVIWGTLLG 316
            E+A    A++  + ++V W  ++ 
Sbjct: 396 FEDANRIFANLAYR-NSVPWTAIIS 419


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/466 (41%), Positives = 295/466 (63%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
            S++N Y   G +    +++D++P ++ V   ++L G  + G V DA  +F++M ++ LV
Sbjct: 256 TSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLV 315

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
            W  +ISG+A++ +P EAL LF EMQ   + P+   ++S++SACA +GAL    W+++Y 
Sbjct: 316 CWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKWIHTYA 375

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
            K        +  ALIDMYAKCG++  A +VF +   K+V +++S I   AM+G +  A 
Sbjct: 376 DKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGDADSAI 435

Query: 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL 285
            LF  MK + I P+ +++I VL ACSH G VE+G  +F SM + H I P+ +HY CMVDL
Sbjct: 436 ALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREHYGCMVDL 495

Query: 286 LGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRY 345
             RA  L +A   I +MP  P+ +IWG+L+ AC+ H   E+G+     L+E + +HDG  
Sbjct: 496 YCRANHLRKAMELIETMPFPPNVIIWGSLMSACQNHGEIELGEFAATRLLELEPDHDGAL 555

Query: 346 ILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIY 405
           ++LSNIY +  + ++   VRK M+ + + +   CS IE++  VH F+  DR H+++ EIY
Sbjct: 556 VVLSNIYAKEKRWDDVGLVRKLMKHKGVSKEKACSRIEVNNEVHVFMMADRYHKQSDEIY 615

Query: 406 QFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIV 465
           +  + +V ++K  GY   T  ++ D+EEEEK+ V+ +HSEKLAL +GLI  +  S IRIV
Sbjct: 616 KKLDAVVSQLKLVGYTPSTSGILVDLEEEEKKEVVLWHSEKLALCYGLIGERKESCIRIV 675

Query: 466 KNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           KN+RIC DCHS MKLVSKV + +I +RDR  +HHF  G CSC +YW
Sbjct: 676 KNLRICEDCHSFMKLVSKVHRIEIVMRDRTRFHHFNGGICSCRDYW 721



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 149/289 (51%), Gaps = 35/289 (12%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           G + DA  +F++M  R +V+W ++I G++QN      L L+ EM++   EP++ IL ++L
Sbjct: 165 GRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVL 224

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV---------- 196
           SACA  G L YG  ++ +I+    ++ S +  +L++MYA CG++ LA +V          
Sbjct: 225 SACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMV 284

Query: 197 ---------------------FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG 235
                                F    +KD+  +++ I G A +   +EA +LF  M+ + 
Sbjct: 285 VSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRR 344

Query: 236 ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA 295
           I PD I+ ++V+SAC+++G + +   + H+  D +G    L     ++D+  + G L +A
Sbjct: 345 IVPDQITMLSVISACANVGALVQA-KWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKA 403

Query: 296 ENFIASMPMKPDNVI-WGTLLGACRVHRNAEMGQRIGNMLIESDQNHDG 343
                +MP K  NVI W +++ A  +H +A+    + + + E +   +G
Sbjct: 404 REVFENMPRK--NVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNG 450



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 79/352 (22%), Positives = 139/352 (39%), Gaps = 110/352 (31%)

Query: 5   NSFAYDVFVKNSLIQFYSVCGR-------------------------------VRDARWV 33
           N F     ++ SL+  Y+ CG                                V+DAR++
Sbjct: 246 NGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFI 305

Query: 34  FDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVS------------------ 75
           FD   + D+V W++MI+GY  + + LE L+LF++M +R  V                   
Sbjct: 306 FDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGAL 365

Query: 76  ----W-----------------NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGF 114
               W                 N+++    + G++  A  VF  MP+++++SW  +I+ F
Sbjct: 366 VQAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAF 425

Query: 115 AQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVY-SYIQKKCIKLD 173
           A +G    A+ALF  M+  ++EPN    + +L AC+  G ++ G   + S I +  I   
Sbjct: 426 AMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQ 485

Query: 174 SILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKS 233
                 ++D+Y +                                 H  +A EL E M  
Sbjct: 486 REHYGCMVDLYCRA-------------------------------NHLRKAMELIETMP- 513

Query: 234 KGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL 285
               P+ I + +++SAC + G +E G +    + ++     E DH   +V L
Sbjct: 514 --FPPNVIIWGSLMSACQNHGEIELGEFAATRLLEL-----EPDHDGALVVL 558



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 95/192 (49%), Gaps = 13/192 (6%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           KN F   + + N+LI  Y+ CG +  AR VF+     +V+SW+SMIN +  +G+    + 
Sbjct: 377 KNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGDADSAIA 436

Query: 64  LFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLISGF 114
           LF +M ++    N V++  +L      G V++  + F+ M     +S     +  ++  +
Sbjct: 437 LFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREHYGCMVDLY 496

Query: 115 AQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDS 174
            +    ++A+ L   ++++   PN  I  SL+SAC   G ++ G +  + + +     D 
Sbjct: 497 CRANHLRKAMEL---IETMPFPPNVIIWGSLMSACQNHGEIELGEFAATRLLELEPDHDG 553

Query: 175 ILCAALIDMYAK 186
            L   L ++YAK
Sbjct: 554 AL-VVLSNIYAK 564


>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
          Length = 613

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 192/504 (38%), Positives = 302/504 (59%), Gaps = 2/504 (0%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DV   N+++   S  G V +A+ VF      + VSWN+M++G+  +G++    + F   P
Sbjct: 110 DVASWNTMVSGLSKSGAVEEAKVVFLAMPVRNSVSWNAMVSGFACSGDMSTAEEWFRNAP 169

Query: 70  QRND-VSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFR 128
           ++ D V W +++ G +  G+V  A + F  MP R+LVSW  +++G+ +N    +AL LFR
Sbjct: 170 EKEDAVLWTAMVSGYMDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFR 229

Query: 129 EM-QSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC 187
            M +  +++PN++ L S+L  C+ L AL +G  ++ +  K  +  +  +  +L+ MY KC
Sbjct: 230 TMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLLLSRNLTVGTSLVSMYCKC 289

Query: 188 GSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVL 247
           G +  A  +F     +DV A+ + I G A +G   EA  LFE MK +G+ P+ I+++ VL
Sbjct: 290 GDLSSACILFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVVVL 349

Query: 248 SACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPD 307
           +AC H G  + G   F  M +++GI+P +DHY+CMVDLL RAG LE A +FI SMP +P 
Sbjct: 350 TACIHTGLCDFGIQCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDFIRSMPFEPH 409

Query: 308 NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKT 367
              +GTLL ACRV++N E  +     LIE D    G Y+ L+NIY    + ++   VR+ 
Sbjct: 410 PSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAVANQWDDVSRVRRW 469

Query: 368 MRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSV 427
           M+   + + PG S IE+ GV+HEF + DR H +   I++   ++ +++K  GY  +   V
Sbjct: 470 MKDNTVVKTPGYSWIEIKGVLHEFRSNDRLHPQLYLIHEKLGQLAERMKEMGYVPDLDFV 529

Query: 428 MFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKR 487
           + D++E  K  ++  HSEKLA+AFGLI T  G  +RI KN+R+C DCH+A K++S +  R
Sbjct: 530 LHDVDETMKVQMLMRHSEKLAIAFGLISTAHGMTLRIFKNLRVCGDCHNAAKVISMIEDR 589

Query: 488 KISIRDRKHYHHFEDGSCSCLEYW 511
           +I +RD   +HHF  G CSC +YW
Sbjct: 590 EIILRDTTRFHHFRGGHCSCDDYW 613



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 115/241 (47%), Gaps = 40/241 (16%)

Query: 15  NSLIQFYS-VCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRND 73
           N L+  Y+   GR+ DAR +FD     DVVS+N+++  +  +G+     +LF  MP R+ 
Sbjct: 52  NCLLAGYARAPGRLADARHLFDRIPTPDVVSYNTLLLCHFASGDADGARRLFASMPVRDV 111

Query: 74  VSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL 133
            SWN+++ GL + G+V++A  VF  MP R+ VSW  ++SGFA +G    A   FR     
Sbjct: 112 ASWNTMVSGLSKSGAVEEAKVVFLAMPVRNSVSWNAMVSGFACSGDMSTAEEWFRNAPE- 170

Query: 134 DLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLA 193
                                                K D++L  A++  Y   G++  A
Sbjct: 171 -------------------------------------KEDAVLWTAMVSGYMDIGNVVKA 193

Query: 194 MQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM-KSKGISPDSISYIAVLSACSH 252
           ++ F +   +++ ++ + + G   N H+ +A  LF  M +   + P++ +  +VL  CS+
Sbjct: 194 IKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSN 253

Query: 253 L 253
           L
Sbjct: 254 L 254



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 90/191 (47%), Gaps = 12/191 (6%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQ-NGRPKEALALFREMQSLDL 135
            + +   VR G +  A   F   P+++  ++  L++G+A+  GR  +A  LF  + + D+
Sbjct: 21  TAAVAAAVRHGDLAGAEEAFVSTPRKTTATYNCLLAGYARAPGRLADARHLFDRIPTPDV 80

Query: 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ 195
              + +L+   ++    G  D    +++ +  + +   + + + L    +K G+++ A  
Sbjct: 81  VSYNTLLLCHFAS----GDADGARRLFASMPVRDVASWNTMVSGL----SKSGAVEEAKV 132

Query: 196 VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGW 255
           VF +   ++  ++ + + G A +G    A E F N   K    D++ + A++S    +G 
Sbjct: 133 VFLAMPVRNSVSWNAMVSGFACSGDMSTAEEWFRNAPEK---EDAVLWTAMVSGYMDIGN 189

Query: 256 VEKGFYYFHSM 266
           V K   YF +M
Sbjct: 190 VVKAIKYFEAM 200


>gi|15226299|ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g01510, mitochondrial; Flags: Precursor
 gi|3785980|gb|AAC67327.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250369|gb|AEC05463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 584

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 210/552 (38%), Positives = 314/552 (56%), Gaps = 41/552 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V++  F+    +   L++   V G +  AR VFDE     +  WN++  GYVRN    E
Sbjct: 33  IVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFKGYVRNQLPFE 92

Query: 61  GLKLFDKM-------------------PQRNDVSWNSILGGLV----------------- 84
            L L+ KM                    Q  D S    L   V                 
Sbjct: 93  SLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFGCLGIVATELVM 152

Query: 85  ---RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              +FG +  A  +F  M  + LV+W   ++   Q G    AL  F +M +  ++ +S  
Sbjct: 153 MYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADAVQFDSFT 212

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           +VS+LSAC QLG+L+ G  +Y   +K+ I  + I+  A +DM+ KCG+ + A  +F    
Sbjct: 213 VVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMK 272

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
            ++V ++++ I G AMNG S EA  LF  M+++G+ P+ ++++ VLSACSH G V +G  
Sbjct: 273 QRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSACSHAGLVNEGKR 332

Query: 262 YFHSMFDVH--GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACR 319
           YF  M   +   ++P  +HYACMVDLLGR+GLLEEA  FI  MP++PD  IWG LLGAC 
Sbjct: 333 YFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTGIWGALLGACA 392

Query: 320 VHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGC 379
           VHR+  +GQ++ ++L+E+  +    ++LLSNIY    K +  ++VR  MRK   K+    
Sbjct: 393 VHRDMILGQKVADVLVETAPDIGSYHVLLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAY 452

Query: 380 SLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETV 439
           S +E +G +H F  GD+SH +++ IY+  +EI+KKI+  GY  +T SV  D+E EEKE  
Sbjct: 453 SSVEFEGKIHFFNRGDKSHPQSKAIYEKLDEILKKIRKMGYVPDTCSVFHDVEMEEKECS 512

Query: 440 IGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHH 499
           + +HSEKLA+AFGLI  +PG  IR++KN+R C DCH+  K VS +   +I +RD+  +HH
Sbjct: 513 LSHHSEKLAIAFGLIKGRPGHPIRVMKNLRTCDDCHAFSKFVSSLTSTEIIMRDKNRFHH 572

Query: 500 FEDGSCSCLEYW 511
           F +G CSC E+W
Sbjct: 573 FRNGVCSCKEFW 584


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
            repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/556 (37%), Positives = 320/556 (57%), Gaps = 54/556 (9%)

Query: 10   DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM- 68
            D    N ++  Y   G ++ +  +F +    D  SWN+MI+G +RNG     L+L  KM 
Sbjct: 453  DTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMV 512

Query: 69   ---PQRNDVSWN---------SILG-----------------GLVRFGSVDDACR----- 94
               P  N ++++         S+LG                 G VR   +D  C+     
Sbjct: 513  AAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEME 572

Query: 95   ----VFNQMPKRSL---------------VSWVVLISGFAQNGRPKEALALFREMQSLDL 135
                +F  +P+ S                VSW  ++SG+ QNGR ++AL  F  M    +
Sbjct: 573  KASVIFKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTFSFMICSQV 632

Query: 136  EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ 195
            E +   L S++SACA  G L+ G  V+ YIQK    LD  L +++IDMY KCGS++ A  
Sbjct: 633  EVDKFTLTSVVSACASAGVLELGRQVHGYIQKIGHGLDVFLGSSIIDMYVKCGSLNDAWL 692

Query: 196  VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGW 255
            +F+   D++V  +TS I G A++G   EA  LFE M ++GI+P+ +S++ VL+ACSH G 
Sbjct: 693  IFNQAKDRNVVLWTSMISGCALHGQGREAVRLFELMINEGITPNEVSFVGVLTACSHAGL 752

Query: 256  VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
            +E+G  YF  M +V+GI+P  +H+ CMVDL GRAG L E + FI +  +   + +W + L
Sbjct: 753  LEEGCKYFRLMREVYGIRPGAEHFTCMVDLYGRAGRLNEIKEFIHNNAISKLSSVWRSFL 812

Query: 316  GACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKR 375
             +CRVH+N EMG  +   L+E +    G YIL S+I     + E A ++R  M++R +K+
Sbjct: 813  SSCRVHKNIEMGIWVCKKLLELEPFDAGPYILFSSICATEHRWEEAAKIRSLMQQRGVKK 872

Query: 376  APGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEE 435
             P  S I+L   VH F+ GDRSH +  +IY + +E++ ++K  GY+ +   VM D+E+E+
Sbjct: 873  NPSQSWIQLKNQVHSFVMGDRSHPQDTKIYSYLDELIGRLKEIGYSTDVTPVMQDVEQEQ 932

Query: 436  KETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRK 495
            ++ ++GYHSEKLA+A+G+I T PG+ IR++KN+R+C DCH+ +K  S++  R+I IRD  
Sbjct: 933  RQVLLGYHSEKLAIAYGIISTAPGTPIRVMKNLRVCIDCHNFIKYASELLGREIIIRDIH 992

Query: 496  HYHHFEDGSCSCLEYW 511
             +HHF+ G CSC +YW
Sbjct: 993  RFHHFKHGHCSCADYW 1008



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 155/362 (42%), Gaps = 43/362 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDAR-------WVFDESDDLDVVSWNSMINGYVR 54
           V  N F   + +K       S    V D+R       W+     DLD V  NS+++ YV+
Sbjct: 383 VCPNQFTLSIVLK-------SCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVK 435

Query: 55  NGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGF 114
                   KLF  M +++ VSWN ++   ++ G +  +  +F Q+P +   SW  +I G 
Sbjct: 436 CRCFGYAEKLFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGL 495

Query: 115 AQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDS 174
            +NG  + AL L  +M +     N       L   + L  L  G  +++ + K  +  D 
Sbjct: 496 MRNGCERVALELLYKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDG 555

Query: 175 ILCAALIDMYAKCGSIDLAMQVF-------------HSYGDKDVS--AYTSAIFGLAMNG 219
            +  +LIDMY KCG ++ A  +F              S  D  V   +++S + G   NG
Sbjct: 556 FVRNSLIDMYCKCGEMEKASVIFKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNG 615

Query: 220 HSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDH- 278
              +A + F  M    +  D  +  +V+SAC+  G +E G         VHG   ++ H 
Sbjct: 616 RFEDALKTFSFMICSQVEVDKFTLTSVVSACASAGVLELG-------RQVHGYIQKIGHG 668

Query: 279 -----YACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNM 333
                 + ++D+  + G L +A   I +     + V+W +++  C +H       R+  +
Sbjct: 669 LDVFLGSSIIDMYVKCGSLNDAW-LIFNQAKDRNVVLWTSMISGCALHGQGREAVRLFEL 727

Query: 334 LI 335
           +I
Sbjct: 728 MI 729



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 114/261 (43%), Gaps = 33/261 (12%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136
           N +L    +  +++ A ++F ++P+  + SW VLISGFA+ G   + L LF +MQ   + 
Sbjct: 325 NHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVC 384

Query: 137 PNSAILVSLLSAC-AQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC-------- 187
           PN   L  +L +C + +     G  ++ +I +  + LD++L  +++D Y KC        
Sbjct: 385 PNQFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEK 444

Query: 188 -----------------------GSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEA 224
                                  G +  ++ +F     KD +++ + I GL  NG    A
Sbjct: 445 LFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVA 504

Query: 225 FELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVD 284
            EL   M + G + + +++   L   S L  +  G    H+     G+  +      ++D
Sbjct: 505 LELLYKMVAAGPAFNKLTFSIALVLASSLSVLGLG-KQIHTQVLKVGVLDDGFVRNSLID 563

Query: 285 LLGRAGLLEEAENFIASMPMK 305
           +  + G +E+A      +P +
Sbjct: 564 MYCKCGEMEKASVIFKHLPQE 584


>gi|356532565|ref|XP_003534842.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g50990-like [Glycine max]
          Length = 569

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 212/511 (41%), Positives = 306/511 (59%), Gaps = 38/511 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VV   FA    +  SLI  Y+ C R   A  VF  S  LD+ S N +I   V+ G+    
Sbjct: 96  VVVLGFATYPSLVASLISTYAQCHRPHIALHVF--SRILDLFSMNLVIESLVKGGQCDIA 153

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
            K+F KM  R+ V+WNS++GG VR                               N R  
Sbjct: 154 KKVFGKMSVRDVVTWNSMIGGYVR-------------------------------NLRFF 182

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
           +AL++FR M S  +EP+     S+++ACA+LGAL    WV+  + +K ++L+ IL AALI
Sbjct: 183 DALSIFRRMLSAKVEPDGFTFASVVTACARLGALGNAKWVHGLMVEKRVELNYILSAALI 242

Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
           DMYAKCG ID++ QVF       VS + + I GLA++G +++A  +F  M+ + + PDSI
Sbjct: 243 DMYAKCGRIDVSRQVFEEVARDHVSVWNAMISGLAIHGLAMDATLVFSRMEMEHVLPDSI 302

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
           ++I +L+ACSH G VE+G  YF  M +   I+P+L+HY  MVDLLGRAGL+EEA   I  
Sbjct: 303 TFIGILTACSHCGLVEEGRKYFGMMQNRFMIQPQLEHYGTMVDLLGRAGLMEEAYAVIKE 362

Query: 302 MPMKPDNVIWGTLLGACRVHRNAEMGQ-RIGNMLIESDQNHDGRYILLSNIYVETLKGEN 360
           M M+PD VIW  LL ACR+HR  E+G+  I N+     +   G ++LLSN+Y      + 
Sbjct: 363 MRMEPDIVIWRALLSACRIHRKKELGEVAIANI----SRLESGDFVLLSNMYCSLNNWDG 418

Query: 361 AEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGY 420
           AE VR+ M+ R ++++ G S +EL   +H+F A  +SH + + IY+  E ++++ K  G+
Sbjct: 419 AERVRRMMKTRGVRKSRGKSWVELGDGIHQFNAAYQSHPEMKSIYRVLEGLIQRAKLEGF 478

Query: 421 NVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKL 480
              T  V+ D+ EEEKE  + +HSEKLA+A+ ++ T PG+ IRI KN+RIC DCH+ +K+
Sbjct: 479 TPLTDLVLMDVSEEEKEENLMFHSEKLAMAYAVLKTSPGTKIRISKNLRICLDCHNWIKI 538

Query: 481 VSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           VSK+  RKI +RDR  +H FE G CSC +YW
Sbjct: 539 VSKILNRKIIVRDRIRFHQFEGGVCSCKDYW 569



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 78/158 (49%), Gaps = 12/158 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++V+     +  +  +LI  Y+ CGR+  +R VF+E     V  WN+MI+G   +G  ++
Sbjct: 225 LMVEKRVELNYILSAALIDMYAKCGRIDVSRQVFEEVARDHVSVWNAMISGLAIHGLAMD 284

Query: 61  GLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLI 111
              +F +M       + +++  IL      G V++  + F  M  R ++      +  ++
Sbjct: 285 ATLVFSRMEMEHVLPDSITFIGILTACSHCGLVEEGRKYFGMMQNRFMIQPQLEHYGTMV 344

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
               + G  +EA A+ +EM+   +EP+  I  +LLSAC
Sbjct: 345 DLLGRAGLMEEAYAVIKEMR---MEPDIVIWRALLSAC 379


>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 564

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/550 (37%), Positives = 320/550 (58%), Gaps = 47/550 (8%)

Query: 5   NSFAYDVFVKNSLIQF--YSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEI-LEG 61
           +SFA   F  + ++ F   S  G +  AR VF +    ++ SWNS+I GY +   +  E 
Sbjct: 19  SSFA---FALSKIVAFCALSPFGNINYARSVFAQIPHPNIFSWNSLIKGYSQIHTLSKEP 75

Query: 62  LKLFDKMPQRNDVSWNSILGGLVR-----------------------FGS---------- 88
           + LF K+ +      NS     V                        FGS          
Sbjct: 76  IFLFKKLTETGYPVPNSFTLAFVLKACAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVN 135

Query: 89  -------VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
                  +  A +VF +MP R+LV+W  +ISG A+ G   EA+ LFREMQ   ++P++  
Sbjct: 136 FYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGAVDEAMELFREMQKAGIQPDAMT 195

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           LVS++SACA  GALD G W+++YI+K  +  D  L  AL+DMYAKCG I+ A QVF    
Sbjct: 196 LVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDMYAKCGCIERAKQVFVHMP 255

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
            KD +A++S I G A +G + +A + F+ M    ++PD ++++AVLSAC+H G V +G  
Sbjct: 256 VKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEVTPDHVTFLAVLSACAHGGLVSRGRR 315

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           ++  M +  GI+P ++HY C VDLL R+GL+EEA     +M + P+   W +LL  C+  
Sbjct: 316 FWSLMLEF-GIEPSVEHYGCKVDLLCRSGLVEEAYRITTTMKIPPNAATWRSLLMGCKKK 374

Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
           +   +G+ +   L+E +  +   YI++SN+Y    + E   E+RK M+++ IK  PGCS 
Sbjct: 375 KLLNLGEIVARYLLELEPLNAENYIMISNLYSSLSQWEKMSELRKVMKEKCIKPVPGCSS 434

Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIG 441
           IE+DGVVHEF+ GD+SH + + + +F EE+  ++++ GY      V+  + +EEKE  + 
Sbjct: 435 IEVDGVVHEFVMGDQSHPEVKMLREFMEEMSMRVRDSGYRPSISDVLHKVVDEEKECALS 494

Query: 442 YHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
            HSE+ A+A+GL+ T+   VIR+VKN+R+C DCH  +K++SK+++R+I +RDR  +H F 
Sbjct: 495 EHSERFAIAYGLLKTRAPIVIRVVKNLRVCVDCHEVIKIISKLYEREIIVRDRVRFHKFI 554

Query: 502 DGSCSCLEYW 511
            G+CSC ++W
Sbjct: 555 KGTCSCKDFW 564



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 109/234 (46%), Gaps = 39/234 (16%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K+ F   +FV+ SL+ FY  C  +  AR VF+E    ++V+W +MI+G+ R G + E 
Sbjct: 118 VLKDGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGAVDEA 177

Query: 62  LKLF----------DKMPQRNDVSWNSILGGL---------------------------- 83
           ++LF          D M   + VS  ++ G L                            
Sbjct: 178 MELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDM 237

Query: 84  -VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G ++ A +VF  MP +   +W  +I GFA +G  ++A+  F++M   ++ P+    
Sbjct: 238 YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEVTPDHVTF 297

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
           +++LSACA  G +  G   +S + +  I+         +D+  + G ++ A ++
Sbjct: 298 LAVLSACAHGGLVSRGRRFWSLMLEFGIEPSVEHYGCKVDLLCRSGLVEEAYRI 351


>gi|242095216|ref|XP_002438098.1| hypothetical protein SORBIDRAFT_10g007970 [Sorghum bicolor]
 gi|241916321|gb|EER89465.1| hypothetical protein SORBIDRAFT_10g007970 [Sorghum bicolor]
          Length = 596

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/443 (43%), Positives = 270/443 (60%), Gaps = 13/443 (2%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQ----- 131
            ++L    + G +  A RVF++M  R + +W  L++G AQ   P  AL LFR +      
Sbjct: 159 TTLLDSYAKCGDLASARRVFDEMSVRDVATWNALLAGLAQGTEPNLALVLFRRLAGSFRE 218

Query: 132 -SLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSI 190
                EPN   +V+ LSACAQLGAL  G   + + +      +  +C ALIDMY+KCGS+
Sbjct: 219 LPPREEPNEVTVVAALSACAQLGALKDGLAAHDFARTIGAVGNVRVCNALIDMYSKCGSL 278

Query: 191 DLAMQVFHSYG--DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248
             A++VFHS    D+ + +Y + I  L+M+GH  +A +LF+ M ++ I PD ++Y+AVL 
Sbjct: 279 SRALEVFHSIKLEDRTLVSYNATIQALSMHGHGEDALKLFDEMPAR-IEPDEVTYLAVLG 337

Query: 249 ACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDN 308
            C+H G V+ G   F SM     + P + HY  +VDLLGRAG L EA + I  MP   D 
Sbjct: 338 GCNHAGLVDDGRRVFDSM----RVPPNMKHYGTIVDLLGRAGRLAEAHDMIMHMPFPADI 393

Query: 309 VIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTM 368
           V+W TLLGA ++H N ++ +     L +   N DG Y+LLSN+Y    +  +   VR TM
Sbjct: 394 VLWQTLLGAAKMHGNVDLAELAATKLADLGSNVDGDYVLLSNVYASKSRWVDVGRVRDTM 453

Query: 369 RKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVM 428
           R   +K+ PG S  E+DGV+H+F+ GD+ H + +EIY+  +EI  KI   GY  ET +V+
Sbjct: 454 RSNDVKKVPGFSYTEIDGVMHKFINGDKEHLRWREIYRALDEIGSKICELGYEPETSNVL 513

Query: 429 FDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRK 488
            DI EEEK+  + YHSEKLA+AFGLI T PG  IR++KN+RIC DCH   KL+SK + R 
Sbjct: 514 HDIGEEEKQYALSYHSEKLAIAFGLISTPPGETIRVIKNLRICGDCHVVAKLISKAYGRV 573

Query: 489 ISIRDRKHYHHFEDGSCSCLEYW 511
           I IRDR  +H FEDG CSC +YW
Sbjct: 574 IIIRDRARFHQFEDGQCSCRDYW 596



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 114/268 (42%), Gaps = 52/268 (19%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++V+   A DV +  +L+  Y+ CG +  AR VFDE    DV +WN+++ G  +  E   
Sbjct: 145 ILVRLGVAADVRLMTTLLDSYAKCGDLASARRVFDEMSVRDVATWNALLAGLAQGTEPNL 204

Query: 61  GLKLFDK-------MPQR---NDVSWNSILGGLVRFGSVDD------------------- 91
            L LF +       +P R   N+V+  + L    + G++ D                   
Sbjct: 205 ALVLFRRLAGSFRELPPREEPNEVTVVAALSACAQLGALKDGLAAHDFARTIGAVGNVRV 264

Query: 92  ----------------ACRVFN--QMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL 133
                           A  VF+  ++  R+LVS+   I   + +G  ++AL LF EM + 
Sbjct: 265 CNALIDMYSKCGSLSRALEVFHSIKLEDRTLVSYNATIQALSMHGHGEDALKLFDEMPA- 323

Query: 134 DLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLA 193
            +EP+    +++L  C   G +D G  V+  ++   +  +      ++D+  + G +  A
Sbjct: 324 RIEPDEVTYLAVLGGCNHAGLVDDGRRVFDSMR---VPPNMKHYGTIVDLLGRAGRLAEA 380

Query: 194 MQ-VFHSYGDKDVSAYTSAIFGLAMNGH 220
              + H     D+  + + +    M+G+
Sbjct: 381 HDMIMHMPFPADIVLWQTLLGAAKMHGN 408


>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
 gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
          Length = 1495

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 187/419 (44%), Positives = 286/419 (68%), Gaps = 1/419 (0%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136
           NS+L      G V  A +VF++MP++ LV+W  +I+GFA+NG+P+EALAL+ EM S  ++
Sbjct: 160 NSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIK 219

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
           P+   +VSLLSACA++GAL  G  V+ Y+ K  +  +      L+D+YA+CG ++ A  +
Sbjct: 220 PDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTL 279

Query: 197 FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKS-KGISPDSISYIAVLSACSHLGW 255
           F    DK+  ++TS I GLA+NG   EA ELF+ M+S +G+ P  I+++ +L ACSH G 
Sbjct: 280 FDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGM 339

Query: 256 VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
           V++GF YF  M + + I+P ++H+ CMVDLL RAG +++A  +I SMPM+P+ VIW TLL
Sbjct: 340 VKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLL 399

Query: 316 GACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKR 375
           GAC VH ++++ +     +++ + NH G Y+LLSN+Y    +  + +++RK M +  +K+
Sbjct: 400 GACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKK 459

Query: 376 APGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEE 435
            PG SL+E+   VHEFL GD+SH ++  IY   +E+  ++++ GY  +  +V  D+EEEE
Sbjct: 460 VPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEE 519

Query: 436 KETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDR 494
           KE  + YHSEK+A+AF LI T   S I +VKN+R+C+DCH A+KLVSKV+ R+I +RDR
Sbjct: 520 KENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDR 578



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 116/242 (47%), Gaps = 45/242 (18%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V+++ F   ++V+NSL+  Y+ CG V  A  VFD+  + D+V+WNS+ING+  NG+  E
Sbjct: 146 VVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEE 205

Query: 61  GLKLFDKMPQ---------------------------------------RNDVSWNSILG 81
            L L+ +M                                         RN  S N +L 
Sbjct: 206 ALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLD 265

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD-LEPNSA 140
              R G V++A  +F++M  ++ VSW  LI G A NG  KEA+ LF+ M+S + L P   
Sbjct: 266 LYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEI 325

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKC---IKLDSILCAALIDMYAKCGSIDLAMQVF 197
             V +L AC+  G +  G   +  ++++     +++   C  ++D+ A+ G +  A +  
Sbjct: 326 TFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGC--MVDLLARAGQVKKAYEYI 383

Query: 198 HS 199
            S
Sbjct: 384 KS 385


>gi|357467379|ref|XP_003603974.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355493022|gb|AES74225.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 566

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 192/437 (43%), Positives = 284/437 (64%), Gaps = 2/437 (0%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136
           N+++      G +  A +VF++M  R +VSW  +I+GF  +    EA+ LF+ M  + ++
Sbjct: 130 NALIHMYSEIGELVIARQVFDRMSHRDVVSWTSMIAGFVNHHLTVEAIQLFQRMLEVGVD 189

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
            N A ++S+L  CA  GAL  G  V+  +++K I   + +C ALI MY+KCG ++ A +V
Sbjct: 190 VNEATVISVLRGCADSGALSVGRKVHGIVKEKGIDFKANVCTALIHMYSKCGCLESAREV 249

Query: 197 FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWV 256
           F    D+DV  +T+ I+GLA +G   EA ELF  M++  + PD  + + VLSA  + G V
Sbjct: 250 FDDVLDRDVFVWTAMIYGLACHGMCKEAIELFLEMETCNVKPDERTIMVVLSAYRNAGLV 309

Query: 257 EKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLG 316
            +G+ +F+ +   + +KP + H+ CMVDLL + G LEEAE+FI +MPMKPD VIW TL+ 
Sbjct: 310 REGYMFFNDVQKRYSMKPNIKHFGCMVDLLAKGGCLEEAEDFINAMPMKPDAVIWRTLIW 369

Query: 317 ACRVHRNAEMGQRIGNML-IESDQNHD-GRYILLSNIYVETLKGENAEEVRKTMRKRKIK 374
           AC+VH + E  +R+   L ++    HD G YIL SN+Y  T K  +  EVR+ M K+ + 
Sbjct: 370 ACKVHADTERAERLMKHLELQGMSAHDSGSYILASNVYASTGKWCDKAEVRELMNKKGLV 429

Query: 375 RAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEE 434
           + PG S IE+DGVVHEF+ GD  H  T++I+   +++V K++  GYN +   VM ++++E
Sbjct: 430 KPPGSSRIEVDGVVHEFVMGDYDHPDTEKIFIKLDQMVDKLRKEGYNPKVSEVMLEMDDE 489

Query: 435 EKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDR 494
           EK   + +HSEKLALA+GLI T PGS IRIVKN+R C DCH  MKL+SKV++R I +RDR
Sbjct: 490 EKAIQLLHHSEKLALAYGLIRTCPGSKIRIVKNLRSCEDCHEFMKLISKVYQRDIIVRDR 549

Query: 495 KHYHHFEDGSCSCLEYW 511
             +HHF++G CSC +YW
Sbjct: 550 IRFHHFKNGDCSCKDYW 566



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 142/299 (47%), Gaps = 43/299 (14%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           K  F +D++++N+LI  YS  G +  AR VFD     DVVSW SMI G+V +   +E ++
Sbjct: 119 KMGFGFDLYIQNALIHMYSEIGELVIARQVFDRMSHRDVVSWTSMIAGFVNHHLTVEAIQ 178

Query: 64  LFDKMPQ----RNDVSWNSILGGLV----------------------------------- 84
           LF +M +     N+ +  S+L G                                     
Sbjct: 179 LFQRMLEVGVDVNEATVISVLRGCADSGALSVGRKVHGIVKEKGIDFKANVCTALIHMYS 238

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
           + G ++ A  VF+ +  R +  W  +I G A +G  KEA+ LF EM++ +++P+   ++ 
Sbjct: 239 KCGCLESAREVFDDVLDRDVFVWTAMIYGLACHGMCKEAIELFLEMETCNVKPDERTIMV 298

Query: 145 LLSACAQLGALDYGNWVYSYIQKK-CIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           +LSA    G +  G   ++ +QK+  +K +      ++D+ AK G ++ A    ++   K
Sbjct: 299 VLSAYRNAGLVREGYMFFNDVQKRYSMKPNIKHFGCMVDLLAKGGCLEEAEDFINAMPMK 358

Query: 204 -DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISP-DSISYIAVLSACSHLG-WVEKG 259
            D   + + I+   ++  +  A  L ++++ +G+S  DS SYI   +  +  G W +K 
Sbjct: 359 PDAVIWRTLIWACKVHADTERAERLMKHLELQGMSAHDSGSYILASNVYASTGKWCDKA 417



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 105/241 (43%), Gaps = 8/241 (3%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK---EALALFREMQSLDL---EPNSA 140
           G ++ A  + N  P  +   +  +I  ++    P    +AL+LF  M        +P++ 
Sbjct: 33  GDLNYARLLLNTNPSLNSYYYNTIIRAYSHTSNPTHHFQALSLFIFMLQPHTNVPKPDTF 92

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
                L +C +L        ++ +I K     D  +  ALI MY++ G + +A QVF   
Sbjct: 93  TYSFALKSCGRLKLTQQAKQLHGFINKMGFGFDLYIQNALIHMYSEIGELVIARQVFDRM 152

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
             +DV ++TS I G   +  ++EA +LF+ M   G+  +  + I+VL  C+  G +  G 
Sbjct: 153 SHRDVVSWTSMIAGFVNHHLTVEAIQLFQRMLEVGVDVNEATVISVLRGCADSGALSVG- 211

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
              H +    GI  + +    ++ +  + G LE A      + +  D  +W  ++     
Sbjct: 212 RKVHGIVKEKGIDFKANVCTALIHMYSKCGCLESAREVFDDV-LDRDVFVWTAMIYGLAC 270

Query: 321 H 321
           H
Sbjct: 271 H 271


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/462 (41%), Positives = 287/462 (62%), Gaps = 1/462 (0%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N++I  Y +   I    ++FD+M  ++ VS+NS +  LV+    D+A  VFN MP   +V
Sbjct: 457 NALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARDVFNNMPSPDVV 516

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           SW  +IS  AQ  +  EA+ +FR M      PN  IL  LL     LGA   G  +++  
Sbjct: 517 SWTTIISACAQADQGNEAVEIFRSMLHERELPNPPILTILLGLSGNLGAPQLGQQIHTIA 576

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
            K  +    ++  AL+ MY KC S D +++VF S  ++D+  + + I G A +G   EA 
Sbjct: 577 IKLGMDSGLVVANALVSMYFKCSSAD-SLKVFDSMEERDIFTWNTIITGYAQHGLGREAI 635

Query: 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL 285
            +++ M S G+ P+ ++++ +L ACSH G V++G  +F SM   +G+ P L+HYACMVDL
Sbjct: 636 RMYQLMVSAGVLPNEVTFVGLLHACSHSGLVDEGHQFFKSMSSDYGLTPLLEHYACMVDL 695

Query: 286 LGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRY 345
           LGRAG ++ AE+FI  MP++PD+VIW  LLGAC++H+N E+G+R    L   + ++ G Y
Sbjct: 696 LGRAGDVQGAEHFIYDMPIEPDSVIWSALLGACKIHKNVEIGRRAAEKLFSIEPSNAGNY 755

Query: 346 ILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIY 405
           ++LSNIY      +   +VRK M++R + + PGCS +++   +H F+ GD  HE+ Q IY
Sbjct: 756 VMLSNIYSSQGMWDEVAKVRKLMKERGVNKDPGCSWMQIKNKMHSFVTGDEEHEQIQNIY 815

Query: 406 QFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIV 465
               E+   +K  GY  +T  V+ DI+EE+KE+ + YHSEKLA+A+GL+ T  G  I+I+
Sbjct: 816 ATLWELYTLLKATGYVPDTDFVLHDIDEEQKESSLLYHSEKLAVAYGLLVTPKGMPIQIM 875

Query: 466 KNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSC 507
           KN+RIC DCH+ +K VS V KR+I +RD   +HHF +GSCSC
Sbjct: 876 KNLRICGDCHTFIKFVSSVTKREIDVRDGNRFHHFRNGSCSC 917



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 94/292 (32%), Positives = 151/292 (51%), Gaps = 13/292 (4%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           M  +N + +     +++I   S  GR+ DA  V+       V S  SM+ G  R G I +
Sbjct: 285 MAARNEYTW-----STIIAALSQAGRIDDAFAVYQRDPLKSVPSRTSMLTGLARYGRIDD 339

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
              LFD++ + N VSWN+++ G ++   VD+A  +FN+MP R+ +SW  +I+G+A+NGR 
Sbjct: 340 AKILFDQIHEPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGYARNGRS 399

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
           ++AL   + +    + P+ + L S   AC+ + AL+ G  V+S   K   + +S +C AL
Sbjct: 400 EQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQVHSLAVKAGCQFNSYVCNAL 459

Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           I +Y K  SI    Q+F     KD  +Y S +  L  N    EA ++F NM     SPD 
Sbjct: 460 ITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARDVFNNMP----SPDV 515

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLL 292
           +S+  ++SAC+      +    F SM      + EL +   +  LLG +G L
Sbjct: 516 VSWTTIISACAQADQGNEAVEIFRSMLH----ERELPNPPILTILLGLSGNL 563



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 160/314 (50%), Gaps = 18/314 (5%)

Query: 17  LIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSW 76
           L+  Y+  GRVRDAR VFD     + V+WN+M+  YV+NG+I    KLFD MP R+  SW
Sbjct: 101 LLSGYARAGRVRDARRVFDGMGVRNTVAWNAMVTCYVQNGDITLARKLFDAMPSRDVSSW 160

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFA---QNGRPKEALALFREMQSL 133
           N++L G      +++A  +F +MP+R+ VSW V+ISG+    Q+GR   A  +FR M   
Sbjct: 161 NTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGR---AWDMFRTMLCE 217

Query: 134 DLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAK-CGSIDL 192
            + P    LVS+LSA   LG       ++  + K   + D ++  A+++ Y K    +D 
Sbjct: 218 GMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLDS 277

Query: 193 AMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSH 252
           A++ F     ++   +++ I  L+  G   +AF +++    K +     S  ++L+  + 
Sbjct: 278 AVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSVP----SRTSMLTGLAR 333

Query: 253 LGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIW- 311
            G ++     F  + +     P +  +  M+    +  +++EAE+    MP + + + W 
Sbjct: 334 YGRIDDAKILFDQIHE-----PNVVSWNAMITGYMQNEMVDEAEDLFNRMPFR-NTISWA 387

Query: 312 GTLLGACRVHRNAE 325
           G + G  R  R+ +
Sbjct: 388 GMIAGYARNGRSEQ 401



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 106/236 (44%), Gaps = 16/236 (6%)

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
           L R G + +A  VF+ MP R +++W  +I  +  NG P    +L   +   +L   +   
Sbjct: 43  LGRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADAISGGNLRTGTI-- 100

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
             LLS  A+ G +     V+  +  +    +++   A++  Y + G I LA ++F +   
Sbjct: 101 --LLSGYARAGRVRDARRVFDGMGVR----NTVAWNAMVTCYVQNGDITLARKLFDAMPS 154

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           +DVS++ + + G   +    EA  LFE M  +    + +S+  ++S    +    + +  
Sbjct: 155 RDVSSWNTMLTGYCHSQLMEEARNLFERMPER----NGVSWTVMISGYVLIEQHGRAWDM 210

Query: 263 FHSMFDVHGIKPELDHYACM---VDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
           F +M    G+ PE  +   +   V  LG+ G+LE     +     + D V+   +L
Sbjct: 211 FRTML-CEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAIL 265



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 96/201 (47%), Gaps = 8/201 (3%)

Query: 54  RNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISG 113
           R G + E  ++FD MP R+ ++WNS++      G  D    + + +   +L +  +L+SG
Sbjct: 45  RLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADAISGGNLRTGTILLSG 104

Query: 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD 173
           +A+ GR ++A  +F  M       N+    ++++   Q G +     ++  +  +    D
Sbjct: 105 YARAGRVRDARRVFDGMGVR----NTVAWNAMVTCYVQNGDITLARKLFDAMPSR----D 156

Query: 174 SILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKS 233
                 ++  Y     ++ A  +F    +++  ++T  I G  +      A+++F  M  
Sbjct: 157 VSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLC 216

Query: 234 KGISPDSISYIAVLSACSHLG 254
           +G++P+  + ++VLSA  HLG
Sbjct: 217 EGMTPEQPNLVSVLSAVRHLG 237



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 69/148 (46%), Gaps = 13/148 (8%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ 70
           + V N+L+  Y  C    D+  VFD  ++ D+ +WN++I GY ++G   E ++++  M  
Sbjct: 585 LVVANALVSMYFKCSSA-DSLKVFDSMEERDIFTWNTIITGYAQHGLGREAIRMYQLMVS 643

Query: 71  ----RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRS-----LVSWVVLISGFAQNGRPK 121
                N+V++  +L      G VD+  + F  M         L  +  ++    + G  +
Sbjct: 644 AGVLPNEVTFVGLLHACSHSGLVDEGHQFFKSMSSDYGLTPLLEHYACMVDLLGRAGDVQ 703

Query: 122 EALALFREMQSLDLEPNSAILVSLLSAC 149
            A     +M    +EP+S I  +LL AC
Sbjct: 704 GAEHFIYDMP---IEPDSVIWSALLGAC 728


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 212/554 (38%), Positives = 305/554 (55%), Gaps = 51/554 (9%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLD--VVSWNSMINGYVRNGEIL 59
           V K     + FV+ SLI  Y  C  + +AR +FDE+       V +NS+++GY  N  + 
Sbjct: 36  VFKTGCLLEPFVQTSLISMYGKCSLIDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVK 95

Query: 60  EGLKLFDKMPQR----NDVSW-----------------------------------NSIL 80
           + + LF +M +     N V+                                    N +L
Sbjct: 96  DVVVLFCEMRELGVEINGVTMLGLVQPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLL 155

Query: 81  GGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
              V+ G +D   ++F++MP++ L++W  +I+G+AQNG     L L++EM+S    P+  
Sbjct: 156 TMYVKSGEIDCGRKLFDEMPRKGLITWNAMINGYAQNGLANNVLELYKEMESKGFCPDPL 215

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
            LV +LS+CA LGAL  G  V   ++      +  L  AL++MYA+CG++  A  +F   
Sbjct: 216 TLVGVLSSCAHLGALSVGKEVERKMEGFGFSSNPFLNNALVNMYARCGNLKKARDIFDGM 275

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
             K V ++T+ I G  M+G    A  LF+ M   GI PD  ++++VLSACSH G   KG 
Sbjct: 276 PVKSVVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGL 335

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
            YF  M   +G++P  +HY+CMVDLLGRAG L EA   I SM ++ D  +WG LLGAC++
Sbjct: 336 DYFGVMERKYGLRPGAEHYSCMVDLLGRAGRLNEARELIESMQVRADGALWGALLGACKI 395

Query: 321 HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS 380
           HRN E+ +     +IE +  + G Y+LLSN+Y E    E    VR  MRKRK+K+ PGCS
Sbjct: 396 HRNVELAELAFEQVIELEPTNTGYYVLLSNVYTEAGNLEGILRVRMLMRKRKLKKDPGCS 455

Query: 381 LIELDGVVHEFLAGDRSHEKTQEIYQF---WEEIVKKIKNYGYNVETRSVMFDIEEEEKE 437
            +E  G VH F AGDR+H +T EIY+     E +VK +     N   R        EE  
Sbjct: 456 YVEFKGRVHLFFAGDRNHPQTNEIYKKLNELENLVKDLDGCKKNDHER-------REEYL 508

Query: 438 TVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHY 497
             +G HSEKLA+AF L+ T+  + I I+KN+RIC DCH  +KLVSK+  R+  +RD   +
Sbjct: 509 NSMGVHSEKLAVAFALLNTRKETEIIIIKNLRICGDCHLFIKLVSKIVDRQFVVRDATRF 568

Query: 498 HHFEDGSCSCLEYW 511
           HHF++G CSC EYW
Sbjct: 569 HHFKNGFCSCKEYW 582



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 76/181 (41%), Gaps = 4/181 (2%)

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
           PN+      + +CA L     G  ++ ++ K    L+  +  +LI MY KC  ID A ++
Sbjct: 8   PNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSLIDNARKL 67

Query: 197 F--HSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
           F  +    K    Y S + G A+N    +   LF  M+  G+  + ++ + ++  C   G
Sbjct: 68  FDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQPCGIPG 127

Query: 255 WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTL 314
            +  G    H      G+  +     C++ +  ++G ++        MP K   + W  +
Sbjct: 128 NLGLGM-CVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRK-GLITWNAM 185

Query: 315 L 315
           +
Sbjct: 186 I 186


>gi|53793521|dbj|BAD54682.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
          Length = 381

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/373 (49%), Positives = 250/373 (67%), Gaps = 3/373 (0%)

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKC-IKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
           L++LLSACA LGAL    W ++Y+   C   + + L  AL++MY +CG +  A  +FHS 
Sbjct: 9   LLALLSACAHLGALHTARWAHAYLATTCSFPITTNLATALLNMYMRCGDVQTACSLFHST 68

Query: 201 GD--KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEK 258
               KDV  +T  I GLA+NG S +A  LF +MK   I PDS++  AVLSAC+H G V++
Sbjct: 69  PTRHKDVHTWTVMIAGLALNGFSTDALHLFTHMKDHNIQPDSVTLTAVLSACTHAGMVDE 128

Query: 259 GFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
           G      M   + ++P ++HY C VDLLGRAGLLEEA   I ++P K D  +WG LL AC
Sbjct: 129 GKRILRRMPLDYHLQPTIEHYGCTVDLLGRAGLLEEALALIRAVPFKADVALWGALLVAC 188

Query: 319 RVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPG 378
           R HRN EMGQ +   ++  D  H G ++ LSN+Y    K +  +EVR +M++ +I + PG
Sbjct: 189 RCHRNFEMGQMVAMEILRLDPQHAGAWVFLSNVYAAAGKWDLVQEVRSSMKQHRIHKPPG 248

Query: 379 CSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKET 438
            S++ELDGVV+EFL+GD SH ++ +IY   +EI K +   G+   T+ V FDI+EE+KE 
Sbjct: 249 SSVVELDGVVYEFLSGDHSHPQSDQIYAMLDEIGKTLSLKGHKPATKLVTFDIDEEDKEV 308

Query: 439 VIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYH 498
            I  HSEKLA+AFGLI T+ G+VIRIVKN+RIC DCHS MK+VS+V+ R I +RDR  +H
Sbjct: 309 CISQHSEKLAVAFGLINTRRGAVIRIVKNLRICEDCHSVMKVVSEVYDRVIVVRDRNRFH 368

Query: 499 HFEDGSCSCLEYW 511
           HF+ GSCSCL+YW
Sbjct: 369 HFKSGSCSCLDYW 381



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 2/85 (2%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKR--SLVSWVVLISGFAQNGRPKEALALFREMQSLD 134
            ++L   +R G V  AC +F+  P R   + +W V+I+G A NG   +AL LF  M+  +
Sbjct: 46  TALLNMYMRCGDVQTACSLFHSTPTRHKDVHTWTVMIAGLALNGFSTDALHLFTHMKDHN 105

Query: 135 LEPNSAILVSLLSACAQLGALDYGN 159
           ++P+S  L ++LSAC   G +D G 
Sbjct: 106 IQPDSVTLTAVLSACTHAGMVDEGK 130



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 89/205 (43%), Gaps = 21/205 (10%)

Query: 6   SFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDL--DVVSWNSMINGYVRNGEILEGLK 63
           SF     +  +L+  Y  CG V+ A  +F  +     DV +W  MI G   NG   + L 
Sbjct: 37  SFPITTNLATALLNMYMRCGDVQTACSLFHSTPTRHKDVHTWTVMIAGLALNGFSTDALH 96

Query: 64  LFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMP-----KRSLVSWVVLISGF 114
           LF  M     Q + V+  ++L      G VD+  R+  +MP     + ++  +   +   
Sbjct: 97  LFTHMKDHNIQPDSVTLTAVLSACTHAGMVDEGKRILRRMPLDYHLQPTIEHYGCTVDLL 156

Query: 115 AQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDS 174
            + G  +EALAL R   ++  + + A+  +LL AC      + G  V   I    ++LD 
Sbjct: 157 GRAGLLEEALALIR---AVPFKADVALWGALLVACRCHRNFEMGQMVAMEI----LRLDP 209

Query: 175 ILCAA---LIDMYAKCGSIDLAMQV 196
               A   L ++YA  G  DL  +V
Sbjct: 210 QHAGAWVFLSNVYAAAGKWDLVQEV 234


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/504 (38%), Positives = 294/504 (58%), Gaps = 23/504 (4%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSM--INGYVRNGEILEGLKLFDK 67
           D+ V NSL+ +Y+ C  V  AR  F      D+VSWN+M  + G+ + G+    L+ F +
Sbjct: 247 DLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQR 306

Query: 68  MPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALF 127
           M                       AC VF+++  R +V W  +IS  AQ+GR   AL L 
Sbjct: 307 M---------------------HIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLL 345

Query: 128 REMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC 187
           REM   ++E N+  +VS L AC++L AL  G  ++ +I +  +   + +  +LIDMY +C
Sbjct: 346 REMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRC 405

Query: 188 GSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVL 247
           GSI  + ++F     +D+ ++   I    M+G  ++A  LF+  ++ G+ P+ I++  +L
Sbjct: 406 GSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLL 465

Query: 248 SACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPD 307
           SACSH G +E+G+ YF  M   + + P ++ YACMVDLL RAG   E   FI  MP +P+
Sbjct: 466 SACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPN 525

Query: 308 NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKT 367
             +WG+LLGACR+H N ++ +     L E +    G Y+L++NIY    + E+A ++R  
Sbjct: 526 AAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCL 585

Query: 368 MRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSV 427
           M++R + + PGCS IE+   +H F+ GD SH   ++I    E +   IK  GY  +T  V
Sbjct: 586 MKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIGYVPDTNFV 645

Query: 428 MFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKR 487
           + D++E+EKE  +  HSEK+ALAFGLI T  G+ +RI+KN+R+C DCHSA K +SKV KR
Sbjct: 646 LQDVDEDEKEFSLCGHSEKIALAFGLISTTAGTPLRIIKNLRVCGDCHSATKFISKVEKR 705

Query: 488 KISIRDRKHYHHFEDGSCSCLEYW 511
            I +RD   +HHF DG CSC +YW
Sbjct: 706 DIIMRDNYRFHHFVDGVCSCGDYW 729



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 95/397 (23%), Positives = 163/397 (41%), Gaps = 93/397 (23%)

Query: 12  FVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQR 71
           F+ + L++ Y   G V DAR +FD+  + +V SW +++  Y   G+  E +KLF  M   
Sbjct: 46  FLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNE 105

Query: 72  ---------------------------------------NDVSWNSILGGLVRFGSVDDA 92
                                                  N     SIL   ++ G +D A
Sbjct: 106 GVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIA 165

Query: 93  CRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQL 152
            R F ++  + +  W +++SG+   G  K+AL +FR+M    ++PNS  + S +SAC  L
Sbjct: 166 RRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNL 225

Query: 153 GALDYGNWVYSYIQKKCIKL-----DSILCAALIDMYAKCGSID---------------- 191
             L +G  ++ Y    CIK+     D ++  +L+D YAKC S++                
Sbjct: 226 SLLRHGREIHGY----CIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVS 281

Query: 192 ----LAMQVFHSYGD-----------------------KDVSAYTSAIFGLAMNGHSIEA 224
               LA+  F  YGD                       +DV  + S I   A +G S+ A
Sbjct: 282 WNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNA 341

Query: 225 FELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVD 284
            +L   M    +  ++++ ++ L ACS L  + +G    H      G+         ++D
Sbjct: 342 LDLLREMNLSNVEVNTVTMVSALPACSKLAALRQG-KEIHQFIIRCGLDTCNFILNSLID 400

Query: 285 LLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           + GR G ++++      MP + D V W  ++    +H
Sbjct: 401 MYGRCGSIQKSRRIFDLMPQR-DLVSWNVMISVYGMH 436



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 80/177 (45%), Gaps = 2/177 (1%)

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
           I  S+L  C +L  L  G  V++ +    + +   L + L+++Y + G ++ A ++F   
Sbjct: 12  IYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKM 71

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
            +++V ++T+ +      G   E  +LF  M ++G+ PD   +  V  ACS L     G 
Sbjct: 72  SERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGK 131

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
             +  M  + G +        ++D+  + G ++ A  F   +  K D  +W  ++  
Sbjct: 132 DVYDYMLSI-GFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK-DVFMWNIMVSG 186


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/466 (40%), Positives = 289/466 (62%), Gaps = 1/466 (0%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N++I  Y +   +    ++F +M  ++ VSWNS L  LV+   +D+A   F+ M  R  V
Sbjct: 458 NALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDV 517

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           SW  +IS +A   +  EA+  F+ M      PNS IL  LL  C  LGA   G  +++  
Sbjct: 518 SWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVA 577

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
            K  +  + I+  ALI MY KCG  D + ++F    ++D+  + + I G A +G   EA 
Sbjct: 578 IKLGMDSELIVANALISMYFKCGCAD-SRRIFDLMEERDIFTWNTIITGYAQHGLGREAI 636

Query: 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL 285
           +++++M+S G+ P+ ++++ +L+ACSH G V++G+ +F SM   +G+ P  +HYACMVDL
Sbjct: 637 KMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDL 696

Query: 286 LGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRY 345
           LGR G ++ AE FI  MP++PD VIW  LLGAC++H+NAE+G+R    L   + ++ G Y
Sbjct: 697 LGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNY 756

Query: 346 ILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIY 405
           ++LSNIY          EVRK M+++ + + PGCS  ++   +H F+ GD+ HE+ +EI 
Sbjct: 757 VMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIV 816

Query: 406 QFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIV 465
              EE+   +K  GY  +T  V+ DI+EE+KE+ + YHSEKLA+A+ L+ T  G  I+I+
Sbjct: 817 ATLEELYTLLKATGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYCLLATPKGMPIQIL 876

Query: 466 KNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           KN+RIC DCH+ +K VS V KR+I IRD   +HHF +GSCSC ++W
Sbjct: 877 KNLRICGDCHTFIKFVSHVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 157/292 (53%), Gaps = 13/292 (4%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           M+ +N + +     +++I   S  GR+  A  V++      +    ++I G  + G I +
Sbjct: 286 MIERNEYTW-----STMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRIDD 340

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
              LF+++P+   VSWN+++ G ++ G V++A  +F++MP R+ +SW  +I+G+AQNGR 
Sbjct: 341 ARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRS 400

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
           +EAL L +E+    + P+ + L S+  AC+ + AL+ G  V+S   K   + +S  C AL
Sbjct: 401 EEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNAL 460

Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           I MY KC +++ A QVF     KD+ ++ S +  L  N    EA   F+NM S+    D 
Sbjct: 461 ITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSR----DD 516

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLL 292
           +S+  ++SA +H     +    F +MF  H    EL +   +  LLG  G L
Sbjct: 517 VSWTTIISAYAHAEQSNEAMGAFKTMFCEH----ELPNSPILTILLGVCGSL 564



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 160/311 (51%), Gaps = 12/311 (3%)

Query: 17  LIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSW 76
           L+  Y   GRV +AR VFD   + + V+WN+MI+ YV+NG+I    +LFD MP R+  SW
Sbjct: 102 LLSGYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSW 161

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136
           NS+L G      + DA  +F +MP+R+LVSW V+ISG+ +     +A  +F +M    L 
Sbjct: 162 NSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLL 221

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSI-DLAMQ 195
           P+ +   S LSA   LG LD    +     K   + D ++  A++++Y++  S+ D A++
Sbjct: 222 PDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIK 281

Query: 196 VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGW 255
            F S  +++   +++ I  L+  G    A  ++E    K I+  +    A+++  +  G 
Sbjct: 282 FFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRT----ALITGLAQCGR 337

Query: 256 VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIW-GTL 314
           ++     F  +      +P +  +  ++    + G++ EA+     MP + + + W G +
Sbjct: 338 IDDARILFEQI-----PEPIVVSWNALITGYMQNGMVNEAKELFDKMPFR-NTISWAGMI 391

Query: 315 LGACRVHRNAE 325
            G  +  R+ E
Sbjct: 392 AGYAQNGRSEE 402



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 108/219 (49%), Gaps = 14/219 (6%)

Query: 39  DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQ 98
           +L+V   ++ I    R G + E  ++FD MP+R+ ++WNS++      G  D A  +++ 
Sbjct: 31  ELEVSGCSARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDA 90

Query: 99  MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
           +   ++ +  +L+SG+ + GR  EA  +F  M    LE N+    +++S   Q G +   
Sbjct: 91  ISGGNMRTGAILLSGYGRLGRVLEARRVFDGM----LERNTVAWNAMISCYVQNGDITMA 146

Query: 159 NWVYSYIQKKCI-KLDSILCAALIDMYAKCGSIDL--AMQVFHSYGDKDVSAYTSAIFGL 215
             ++  +  + +   +S+L          C S+ +  A  +F    ++++ ++T  I G 
Sbjct: 147 RRLFDAMPSRDVSSWNSMLT-------GYCHSLQMVDARNLFEKMPERNLVSWTVMISGY 199

Query: 216 AMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
               +  +A+++F  M  +G+ PD  ++ + LSA   LG
Sbjct: 200 GRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLG 238



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 77/158 (48%), Gaps = 13/158 (8%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + +K     ++ V N+LI  Y  CG   D+R +FD  ++ D+ +WN++I GY ++G   E
Sbjct: 576 VAIKLGMDSELIVANALISMYFKCG-CADSRRIFDLMEERDIFTWNTIITGYAQHGLGRE 634

Query: 61  GLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLI 111
            +K++  M       N+V++  +L      G VD+  + F  M +   ++     +  ++
Sbjct: 635 AIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMV 694

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
               + G  + A     +M    +EP++ I  +LL AC
Sbjct: 695 DLLGRTGDVQGAEQFIYDMP---IEPDTVIWSALLGAC 729


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/550 (36%), Positives = 307/550 (55%), Gaps = 41/550 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +K+    ++FV N LI  Y+  GR+RD + VFD     D++SWNS+I  Y  N + L  +
Sbjct: 274 IKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAI 333

Query: 63  KLFDKM-------------------PQRNDV-------------SW--------NSILGG 82
            LF +M                    Q  D+              W        N+++  
Sbjct: 334 SLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVM 393

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL-DLEPNSAI 141
             + G VD A  VFN +P   ++SW  +ISG+AQNG   EA+ ++  M+   ++  N   
Sbjct: 394 YAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGT 453

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
            VS+L AC+Q GAL  G  ++  + K  + LD  +  +L DMY KCG ++ A+ +F+   
Sbjct: 454 WVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIP 513

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
             +   + + I     +GH  +A  LF+ M  +G+ PD I+++ +LSACSH G V++G +
Sbjct: 514 RVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQW 573

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            F  M   +GI P L HY CMVD+ GRAG LE A  FI SM ++PD  IWG LL ACRVH
Sbjct: 574 CFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVH 633

Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
            N ++G+     L E +  H G ++LLSN+Y    K E  +E+R     + +++ PG S 
Sbjct: 634 GNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSS 693

Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIG 441
           +E+D  V  F  G+++H   +E+Y+    +  K+K  GY  + R V+ D+E++EKE ++ 
Sbjct: 694 MEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILM 753

Query: 442 YHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
            HSE+LA+AF LI T   + IRI KN+R+C DCHS  K +SK+ +R+I +RD   +HHF+
Sbjct: 754 SHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFK 813

Query: 502 DGSCSCLEYW 511
           +G CSC +YW
Sbjct: 814 NGVCSCGDYW 823



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 106/362 (29%), Positives = 179/362 (49%), Gaps = 39/362 (10%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + +K  F +DV+V  SLI  YS    V +AR +FDE    D+ SWN+MI+GY ++G   E
Sbjct: 175 LALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKE 234

Query: 61  GLKLFDKMPQRNDVSWNSILGGLV-----------------------------------R 85
            L L + +   + V+  S+L                                        
Sbjct: 235 ALTLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAE 294

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
           FG + D  +VF++M  R L+SW  +I  +  N +P  A++LF+EM+   ++P+   L+SL
Sbjct: 295 FGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISL 354

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCA-ALIDMYAKCGSIDLAMQVFHSYGDKD 204
            S  +QLG +     V  +  +K   L+ I    A++ MYAK G +D A  VF+   + D
Sbjct: 355 ASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTD 414

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKG-ISPDSISYIAVLSACSHLGWVEKGFYYF 263
           V ++ + I G A NG + EA E++  M+ +G I+ +  ++++VL ACS  G + +G    
Sbjct: 415 VISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGM-KL 473

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
           H     +G+  ++     + D+ G+ G LE+A +    +P + ++V W TL+     H +
Sbjct: 474 HGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIP-RVNSVPWNTLIACHGFHGH 532

Query: 324 AE 325
            E
Sbjct: 533 GE 534



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 156/348 (44%), Gaps = 52/348 (14%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFD--- 66
           +V +   L+  Y   G V  AR  FD   + DV +WN MI+GY R G   E ++ F    
Sbjct: 85  NVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFM 144

Query: 67  ----------KMPQ-----RNDVSWNSILGGLVRFG-------------------SVDDA 92
                       P      R  +  N I    ++FG                   +V +A
Sbjct: 145 LSSGLTPDYRTFPSVLKACRTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNA 204

Query: 93  CRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQL 152
             +F++MP R + SW  +ISG+ Q+G  KEAL L   ++++D    S  +VSLLSAC + 
Sbjct: 205 RILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAMD----SVTVVSLLSACTEA 260

Query: 153 GALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAI 212
           G  + G  ++SY  K  ++ +  +   LID+YA+ G +    +VF     +D+ ++ S I
Sbjct: 261 GDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSII 320

Query: 213 FGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVE-----KGFYYFHSMF 267
               +N   + A  LF+ M+   I PD ++ I++ S  S LG +      +GF      F
Sbjct: 321 KAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWF 380

Query: 268 DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
                  ++     +V +  + GL++ A      +P   D + W T++
Sbjct: 381 -----LEDITIGNAVVVMYAKLGLVDSARAVFNWLP-NTDVISWNTII 422



 Score = 46.6 bits (109), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 11/93 (11%)

Query: 161 VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGH 220
           V   IQ  CI       A L+++Y   G++ LA   F    ++DV A+   I G    G+
Sbjct: 79  VSKQIQNVCIS------AKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGN 132

Query: 221 S---IEAFELFENMKSKGISPDSISYIAVLSAC 250
           S   I  F LF  M S G++PD  ++ +VL AC
Sbjct: 133 SSEVIRCFSLF--MLSSGLTPDYRTFPSVLKAC 163


>gi|77554579|gb|ABA97375.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 794

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/443 (43%), Positives = 277/443 (62%), Gaps = 15/443 (3%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALF-------RE 129
            ++L    + G +  A +VF++M  R + +W  L++G AQ   P  ALALF       +E
Sbjct: 150 TTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGLAQGTEPNLALALFHRLANSFQE 209

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
           + S + EPN   +V+ LSACAQ+G L  G +V+ + ++  +  +  +C +LIDMY+KCGS
Sbjct: 210 LPSRE-EPNEVTIVAALSACAQIGLLKDGMYVHEFAKRFGLDRNVRVCNSLIDMYSKCGS 268

Query: 190 IDLAMQVFHSYG--DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVL 247
           +  A+ VFHS    D+ + +Y +AI   +M+GH  +A  LF+ M ++ I PD ++Y+AVL
Sbjct: 269 LSRALDVFHSIKPEDQTLVSYNAAIQAHSMHGHGGDALRLFDEMPTR-IEPDGVTYLAVL 327

Query: 248 SACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPD 307
             C+H G V+ G   F+SM     + P + HY  +VDLLGRAG L EA + + SMP   D
Sbjct: 328 CGCNHSGLVDDGLRVFNSM----RVAPNMKHYGTIVDLLGRAGRLTEAYDTVISMPFPAD 383

Query: 308 NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKT 367
            V+W TLLGA ++H   E+ +   N L E   N DG Y+LLSN+Y    +  +   VR T
Sbjct: 384 IVLWQTLLGAAKMHGVVELAELAANKLAELGSNVDGDYVLLSNVYASKARWMDVGRVRDT 443

Query: 368 MRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSV 427
           MR   +++ PG S  E+DGV+H+F+ GD+ H + QEIY+  E+IV +I   GY  ET +V
Sbjct: 444 MRSNDVRKVPGFSYTEIDGVMHKFINGDKEHPRWQEIYRALEDIVSRISELGYEPETSNV 503

Query: 428 MFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKR 487
           + DI EEEK+  + YHSEKLA+AFGLI T PG  +R++KN+RIC DCH   KL+SK + R
Sbjct: 504 LHDIGEEEKQYALCYHSEKLAIAFGLIATPPGETLRVIKNLRICGDCHVVAKLISKAYGR 563

Query: 488 KISIRDRKHYHHFEDGSCSCLEY 510
            I IRDR  +H FEDG CSC +Y
Sbjct: 564 VIVIRDRARFHRFEDGQCSCRDY 586



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 84/191 (43%), Gaps = 9/191 (4%)

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
           P++  L   L A A+         +++ + +  +  D  L   L+D YAKCG +  A +V
Sbjct: 109 PDALSLSFALKASARCSDAHTTVQLHALVLRLGVAADVRLLTTLLDSYAKCGDLASARKV 168

Query: 197 FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKS------KGISPDSISYIAVLSAC 250
           F     +DV+ + S + GLA       A  LF  + +          P+ ++ +A LSAC
Sbjct: 169 FDEMTVRDVATWNSLLAGLAQGTEPNLALALFHRLANSFQELPSREEPNEVTIVAALSAC 228

Query: 251 SHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVI 310
           + +G ++ G  Y H      G+   +     ++D+  + G L  A +   S  +KP++  
Sbjct: 229 AQIGLLKDGM-YVHEFAKRFGLDRNVRVCNSLIDMYSKCGSLSRALDVFHS--IKPEDQT 285

Query: 311 WGTLLGACRVH 321
             +   A + H
Sbjct: 286 LVSYNAAIQAH 296


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 188/466 (40%), Positives = 289/466 (62%), Gaps = 1/466 (0%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N++I  Y +   +    ++F +M  ++ VSWNS L  LV+   +D+A   F+ M  R  V
Sbjct: 458 NALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDV 517

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           SW  +IS +A   +  EA+  F+ M      PNS IL  LL  C  LGA   G  +++  
Sbjct: 518 SWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVA 577

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
            K  +  + I+  ALI MY KCG  D + ++F    ++D+  + + I G A +G   EA 
Sbjct: 578 IKLGMDSELIVANALISMYFKCGCAD-SRRIFDLMEERDIFTWNTIITGYAQHGLGREAI 636

Query: 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL 285
           +++++M+S G+ P+ ++++ +L+ACSH G V++G+ +F SM   +G+ P  +HYACMVDL
Sbjct: 637 KMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDL 696

Query: 286 LGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRY 345
           LGR G ++ AE FI  MP++PD VIW  LLGAC++H+NAE+G+R    L   + ++ G Y
Sbjct: 697 LGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNY 756

Query: 346 ILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIY 405
           ++LSNIY          EVRK M+++ + + PGCS  ++   +H F+ GD+ HE+ +EI 
Sbjct: 757 VMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIV 816

Query: 406 QFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIV 465
              EE+   +K  GY  +T  V+ DI+EE+KE+ + YHSEKLA+A+ L+ T  G  I+I+
Sbjct: 817 ATLEELYTLLKATGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYCLLATPKGMPIQIL 876

Query: 466 KNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           KN+RIC DCH+ +K VS V KR+I IRD   +HHF +GSCSC ++W
Sbjct: 877 KNLRICGDCHTFIKFVSHVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 157/292 (53%), Gaps = 13/292 (4%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           M+ +N + +     +++I   S  GR+  A  V++      +    ++I G  + G I +
Sbjct: 286 MIERNEYTW-----STMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRIDD 340

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
              LF+++P+   VSWN+++ G ++ G V++A  +F++MP R+ +SW  +I+G+AQNGR 
Sbjct: 341 ARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRS 400

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
           +EAL L +E+    + P+ + L S+  AC+ + AL+ G  V+S   K   + +S  C AL
Sbjct: 401 EEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNAL 460

Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           I MY KC +++ A QVF     KD+ ++ S +  L  N    EA   F+NM S+    D 
Sbjct: 461 ITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSR----DD 516

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLL 292
           +S+  ++SA +H     +    F +MF  H    EL +   +  LLG  G L
Sbjct: 517 VSWTTIISAYAHAEQSNEAMGAFKTMFCEH----ELPNSPILTILLGVCGSL 564



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 160/311 (51%), Gaps = 12/311 (3%)

Query: 17  LIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSW 76
           L+  Y   GRV +AR VFD   + + V+WN+MI+ YV+NG+I    +LFD MP R+  SW
Sbjct: 102 LLSGYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSW 161

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136
           NS+L G      + DA  +F +MP+R+LVSW V+ISG+ +     +A  +F +M    L 
Sbjct: 162 NSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLL 221

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSI-DLAMQ 195
           P+ +   S LSA   LG LD    +     K   + D ++  A++++Y++  S+ D A++
Sbjct: 222 PDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIK 281

Query: 196 VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGW 255
            F S  +++   +++ I  L+  G    A  ++E    K I+  +    A+++  +  G 
Sbjct: 282 FFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRT----ALITGLAQCGR 337

Query: 256 VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIW-GTL 314
           ++     F  +      +P +  +  ++    + G++ EA+     MP + + + W G +
Sbjct: 338 IDDARILFEQI-----PEPIVVSWNALITGYMQNGMVNEAKELFDKMPFR-NTISWAGMI 391

Query: 315 LGACRVHRNAE 325
            G  +  R+ E
Sbjct: 392 AGYAQNGRSEE 402



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 108/219 (49%), Gaps = 14/219 (6%)

Query: 39  DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQ 98
           +L+V   ++ I    R G + E  ++FD MP+R+ ++WNS++      G  D A  +++ 
Sbjct: 31  ELEVSGCSARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDA 90

Query: 99  MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
           +   ++ +  +L+SG+ + GR  EA  +F  M    LE N+    +++S   Q G +   
Sbjct: 91  ISGGNMRTGAILLSGYGRLGRVLEARRVFDGM----LERNTVAWNAMISCYVQNGDITMA 146

Query: 159 NWVYSYIQKKCI-KLDSILCAALIDMYAKCGSIDL--AMQVFHSYGDKDVSAYTSAIFGL 215
             ++  +  + +   +S+L          C S+ +  A  +F    ++++ ++T  I G 
Sbjct: 147 RRLFDAMPSRDVSSWNSMLT-------GYCHSLQMVDARNLFEKMPERNLVSWTVMISGY 199

Query: 216 AMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
               +  +A+++F  M  +G+ PD  ++ + LSA   LG
Sbjct: 200 GRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLG 238



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 77/158 (48%), Gaps = 13/158 (8%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + +K     ++ V N+LI  Y  CG   D+R +FD  ++ D+ +WN++I GY ++G   E
Sbjct: 576 VAIKLGMDSELIVANALISMYFKCG-CADSRRIFDLMEERDIFTWNTIITGYAQHGLGRE 634

Query: 61  GLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLI 111
            +K++  M       N+V++  +L      G VD+  + F  M +   ++     +  ++
Sbjct: 635 AIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMV 694

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
               + G  + A     +M    +EP++ I  +LL AC
Sbjct: 695 DLLGRTGDVQGAEQFIYDMP---IEPDTVIWSALLGAC 729


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/586 (35%), Positives = 321/586 (54%), Gaps = 76/586 (12%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +V N F  D+ V  +LI  Y  CG   +AR VFD+    D+VSWN MI  YV NG+  E 
Sbjct: 233 IVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEA 292

Query: 62  LKLFDKMP----QRNDVSWNSILG---------------------GL------------- 83
           L+L+ K+     +R   ++ SILG                     GL             
Sbjct: 293 LELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNM 352

Query: 84  -VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKE-------------------- 122
             + GS+++A +VFN M  R  V+W  LI  +A NG  K+                    
Sbjct: 353 YAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWN 412

Query: 123 --------------ALALFREMQ-SLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK 167
                         A+ +FREM  +  L+P++   +++L ACA LG L     +++ I +
Sbjct: 413 AMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISE 472

Query: 168 KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFEL 227
             ++ + ++   LI+MYA+CGS++ A ++F +  +K V ++T+ +   +  G   EA +L
Sbjct: 473 SELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDL 532

Query: 228 FENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLG 287
           F+ M  +G+ PD ++Y ++L  C+H G +E+G+ YF  M ++H + P  DH+A MVDLLG
Sbjct: 533 FQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHALAPTADHFAAMVDLLG 592

Query: 288 RAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYIL 347
           R+G L +A+  + SMP +PD V W T L ACR+H   E+G+     + E D +    YI 
Sbjct: 593 RSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPSSTAPYIA 652

Query: 348 LSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQF 407
           +SNIY      E    VRK M +R +K+ PG S IE+DG +HEF +G + H +T EI + 
Sbjct: 653 MSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHPRTDEICEE 712

Query: 408 WEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTK-PGSVIRIVK 466
              +   ++  GY  +T++V+ D+ E EKET++ YHSEK+A+AFGL+ ++  G  IR+VK
Sbjct: 713 LTRLHGLMRAAGYVPDTKAVLHDVSEGEKETMLLYHSEKMAIAFGLVSSRGSGEPIRVVK 772

Query: 467 NIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF-EDGSCSCLEYW 511
           N+R+CSDCH+A K ++++  R I +RD   +H F  DG CSC +YW
Sbjct: 773 NLRVCSDCHTATKFIARIAGRDIIVRDCNRFHRFSSDGKCSCGDYW 818



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 107/349 (30%), Positives = 168/349 (48%), Gaps = 41/349 (11%)

Query: 7   FAYDVFVKNSLIQFYSVCGRVRDARWVFDESD--DLDVVSWNSMINGYVRNGEILEGLKL 64
           F  D  V N+LI  Y  C  + DAR VF+  D    +VVSWN+MI  Y +NG   E L L
Sbjct: 38  FERDTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVL 97

Query: 65  FDKMPQR----NDVSWNSILG------------------GL--------------VRFGS 88
           + +M  +    + V++ S+LG                  GL               RFGS
Sbjct: 98  YWRMNLQGLGTDHVTFVSVLGACSSLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGS 157

Query: 89  VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148
           V DA R+F  +  R   SW  +I   +Q+G    AL +F+EM+  D++PNS   ++++S 
Sbjct: 158 VGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMK-CDVKPNSTTYINVISG 216

Query: 149 CAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAY 208
            +    L  G  +++ I       D ++  ALI+MY KCGS   A +VF     +D+ ++
Sbjct: 217 FSTPEVLPEGRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSW 276

Query: 209 TSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD 268
              I    +NG   EA EL++ +  +G      +++++L ACS +  + +G    HS   
Sbjct: 277 NVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQG-RLVHSHIL 335

Query: 269 VHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
             G+  E+     +V++  + G LEEA     +M  + D V W TL+GA
Sbjct: 336 ERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNR-DAVAWSTLIGA 383



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/378 (25%), Positives = 175/378 (46%), Gaps = 75/378 (19%)

Query: 13  VKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP--- 69
           + N+L+  Y+  G V DA+ +F      D  SWN++I  + ++G+    L++F +M    
Sbjct: 144 LANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCDV 203

Query: 70  QRNDVSWNSILGGLV-----------------------------------RFGSVDDACR 94
           + N  ++ +++ G                                     + GS  +A  
Sbjct: 204 KPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEARE 263

Query: 95  VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA 154
           VF++M KR +VSW V+I  +  NG   EAL L++++     +   A  VS+L AC+ + A
Sbjct: 264 VFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKA 323

Query: 155 LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFG 214
           L  G  V+S+I ++ +  +  +  AL++MYAKCGS++ A +VF++  ++D  A+++ I  
Sbjct: 324 LAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGA 383

Query: 215 LAMNGH----------------------------------SIEAFELFENMK-SKGISPD 239
            A NG+                                  ++ A ++F  M  + G+ PD
Sbjct: 384 YASNGYGKDARKARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPD 443

Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI 299
           ++++IAVL AC+ LG + +     H+      ++  +     ++++  R G LEEAE   
Sbjct: 444 AVTFIAVLEACASLGRLSE-VKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLF 502

Query: 300 ASMPMKPDNVIWGTLLGA 317
           A+   K   V W  ++ A
Sbjct: 503 AAAKEKT-VVSWTAMVAA 519



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 140/286 (48%), Gaps = 18/286 (6%)

Query: 56  GEILEGLKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMP--KRSLVSWVV 109
           G+++EG  L +++     +R+ +  N+++    +  S+ DA  VF  M   +R++VSW  
Sbjct: 21  GDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVSWNA 80

Query: 110 LISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC 169
           +I+ +AQNG   EAL L+  M    L  +    VS+L AC+ L     G  +++ +    
Sbjct: 81  MIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLAQ---GREIHNRVFYSG 137

Query: 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFE 229
           +     L  AL+ MYA+ GS+  A ++F S   +D +++ + I   + +G    A  +F+
Sbjct: 138 LDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFK 197

Query: 230 NMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRA 289
            MK   + P+S +YI V+S  S    + +G    H+    +G   +L     ++++ G+ 
Sbjct: 198 EMKCD-VKPNSTTYINVISGFSTPEVLPEG-RKIHAEIVANGFDTDLVVATALINMYGKC 255

Query: 290 GLLEEAENFIASMPMKPDNVIWGTLLGACRV-----HRNAEMGQRI 330
           G   EA      M  K D V W  ++G C V     H   E+ Q++
Sbjct: 256 GSSHEAREVFDKMK-KRDMVSWNVMIG-CYVLNGDFHEALELYQKL 299



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 113/240 (47%), Gaps = 14/240 (5%)

Query: 133 LDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDL 192
           +D +P++   +++L +C+  G +  G  ++  I+    + D+++  ALI MY KC S+  
Sbjct: 1   MDRQPDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVD 60

Query: 193 AMQVFHS--YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250
           A  VF S  +  ++V ++ + I   A NGHS EA  L+  M  +G+  D +++++VL AC
Sbjct: 61  ARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGAC 120

Query: 251 SHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVI 310
           S L    +     H+     G+         +V +  R G + +A+    S+  + D   
Sbjct: 121 SSLAQGRE----IHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTR-DETS 175

Query: 311 WGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370
           W  ++ A     +++ G   G + I  +   D +    S  Y+  + G +  EV    RK
Sbjct: 176 WNAVILA-----HSQSGDWSGALRIFKEMKCDVKPN--STTYINVISGFSTPEVLPEGRK 228


>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
          Length = 564

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 205/528 (38%), Positives = 308/528 (58%), Gaps = 42/528 (7%)

Query: 25  GRVRDARWVFDESDDLDVVSWNSMINGYVRN-GEILEGLKLFDKMPQRNDVSWNSILGGL 83
           G +  AR +F +    ++ SWNSMI G  ++     E + LF KM +R   + N+     
Sbjct: 38  GDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAF 97

Query: 84  VR-----------------------FGS-----------------VDDACRVFNQMPKRS 103
           V                        FGS                 +  A +VF+++  R+
Sbjct: 98  VLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRN 157

Query: 104 LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYS 163
           LV+W  +ISG+A+ G   EAL LFR+MQ   + P+   +VS++SACA  GALD G WV++
Sbjct: 158 LVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHA 217

Query: 164 YIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIE 223
           YI K+ I+ D  L  AL++MYAKCG I+ A +VF +   KD  A++S I GLA+NG + +
Sbjct: 218 YINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAED 277

Query: 224 AFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMV 283
           A E F  M+   + P+ +++I VLSAC+H G V +G  Y+ SM +  GI P ++ Y CMV
Sbjct: 278 ALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSMLEF-GIVPSMELYGCMV 336

Query: 284 DLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDG 343
           DLL RA L+E+A   + +MP+ P+ VIW TLL  C+  +N +  + +   L+E + ++  
Sbjct: 337 DLLCRASLVEDACTLVETMPISPNPVIWRTLLVGCKKSKNLDKSEVVAQRLLELEPHNAE 396

Query: 344 RYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQE 403
            YILLSN+Y    + E   +VRK M+   IK  PGCS IE+DG+VHEF+ GD SH +  E
Sbjct: 397 NYILLSNLYASMSQWEKMSQVRKKMKGMGIKAVPGCSSIEVDGLVHEFVMGDWSHPEAME 456

Query: 404 IYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIR 463
           + +   +I K++   G+      V+ ++ +EEKE  +  HSE+LA+A+GL+ TK    IR
Sbjct: 457 VREILRDISKRVHAVGHQPGISDVLHNVVDEEKENALCEHSERLAIAYGLLKTKTPMAIR 516

Query: 464 IVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           IVKN+R+C DCH   K++S  ++R+I +RDR  +H F +GSCSC ++W
Sbjct: 517 IVKNLRVCGDCHEVTKIISAEYRREIIVRDRVRFHKFVNGSCSCRDFW 564



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 136/246 (55%), Gaps = 4/246 (1%)

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP-KEALALFREMQSLDLE-PNS 139
            L  +G +D A ++F+Q+ + ++ SW  +I G +Q+  P KE + LFR+M       PN+
Sbjct: 33  ALSPYGDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNT 92

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
             +  +L AC+ + AL+ G  V++ + K        +  AL++ YAKC  I LA +VF  
Sbjct: 93  FTMAFVLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDE 152

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
             D+++ A+++ I G A  G   EA  LF +M+  G+ PD ++ ++V+SAC+  G ++ G
Sbjct: 153 ITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTG 212

Query: 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACR 319
             + H+  +   I+ +L+    +V++  + G +E A+    +MP+K D   W +++    
Sbjct: 213 -KWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVK-DTKAWSSMIVGLA 270

Query: 320 VHRNAE 325
           ++  AE
Sbjct: 271 INGLAE 276



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 106/237 (44%), Gaps = 39/237 (16%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K+ F    FV+ +L+ FY+ C  +  A  VFDE  D ++V+W++MI+GY R G + E 
Sbjct: 118 VLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEA 177

Query: 62  LKLFDKMPQ----RNDVSWNSILGGLVRFGSVDD-------------------------- 91
           L LF  M +     ++V+  S++      G++D                           
Sbjct: 178 LGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVNM 237

Query: 92  ---------ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
                    A  VF+ MP +   +W  +I G A NG  ++AL  F  M+   ++PN    
Sbjct: 238 YAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTF 297

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
           + +LSACA  G +  G   +S + +  I     L   ++D+  +   ++ A  +  +
Sbjct: 298 IGVLSACAHSGLVSEGRRYWSSMLEFGIVPSMELYGCMVDLLCRASLVEDACTLVET 354



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 11/161 (6%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           K     D+ +  +L+  Y+ CG +  A+ VFD     D  +W+SMI G   NG   + L+
Sbjct: 221 KQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALE 280

Query: 64  LFDKMPQ----RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS----WVVLISGFA 115
            F +M +     N V++  +L      G V +  R ++ M +  +V     +  ++    
Sbjct: 281 EFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSMLEFGIVPSMELYGCMVDLLC 340

Query: 116 QNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALD 156
           +    ++A  L   ++++ + PN  I  +LL  C +   LD
Sbjct: 341 RASLVEDACTL---VETMPISPNPVIWRTLLVGCKKSKNLD 378


>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
 gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
          Length = 720

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/583 (34%), Positives = 329/583 (56%), Gaps = 73/583 (12%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVF--------------------------- 34
           +++N    DV + N+++  Y+ CG+   AR VF                           
Sbjct: 138 MLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVSWNIAIGACIQSGDILGS 197

Query: 35  ----DESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQR----NDVSWNS--ILGGLV 84
               DES   D  SWN++I+G +R+G   + L    +M Q     N  ++++  +L G++
Sbjct: 198 MQLFDESPLRDTTSWNTIISGLMRSGHAADALSHLRRMAQAGVVFNHYTYSTAFVLAGML 257

Query: 85  ---------------------------------RFGSVDDACRVFNQ---MPKRSLVSWV 108
                                            + G ++ A  VF+    + +    +W 
Sbjct: 258 LLPDLGRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAASVFDHWSPLTRDMNFAWS 317

Query: 109 VLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKK 168
            +++G+ QNGR +EAL LFR M    +  +   L S+ +ACA +G ++ G  V+  ++K 
Sbjct: 318 TMVAGYVQNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVGMVEQGRQVHGCVEKL 377

Query: 169 CIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELF 228
             KLD+ L +A++DMYAKCG+++ A  +F     K+++ +TS +   A +G    A ELF
Sbjct: 378 WYKLDAPLASAIVDMYAKCGNLEDARSIFDRACTKNIAVWTSMLCSYASHGQGRIAIELF 437

Query: 229 ENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGR 288
           E M ++ ++P+ I+ + VLSACSH+G V +G  YF  M + +GI P ++HY C+VDL GR
Sbjct: 438 ERMTAEKMTPNEITLVGVLSACSHVGLVSEGELYFKQMQEEYGIVPSIEHYNCIVDLYGR 497

Query: 289 AGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILL 348
           +GLL++A+NFI    +  + ++W TLL ACR+H++ E  +     L++ +Q   G Y++L
Sbjct: 498 SGLLDKAKNFIEENNINHEAIVWKTLLSACRLHQHNEYAKLASEKLVQLEQCDAGSYVML 557

Query: 349 SNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFW 408
           SNIY    K  +  E+R +M++RK+++ PG S I L   VH F+AGD SH ++ EIY + 
Sbjct: 558 SNIYATNNKWHDTFELRVSMQERKVRKQPGRSWIHLKNTVHTFVAGDASHPQSAEIYAYL 617

Query: 409 EEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNI 468
           E++V+++K  GY   T  V+ D+E+E++ET + +HSEKLA+AFG+I T  G+ +RI KN+
Sbjct: 618 EKLVERLKEIGYTSRTDLVVHDVEDEQRETALKFHSEKLAIAFGIISTPSGTPLRIFKNL 677

Query: 469 RICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           R+C DCH A+K +S    R+I +RD   +HHF+D SCSC ++W
Sbjct: 678 RVCEDCHEAIKYISLATGREIVVRDLYRFHHFKDASCSCEDFW 720



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 159/322 (49%), Gaps = 9/322 (2%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDAR----WVFDESDDLDVVSWNSMINGYVRNG 56
           M+ +     + FV  ++++  +  G V   +    W+      LDVV  N++++ Y + G
Sbjct: 102 MLAEGEATPNAFVLAAVVRCCAGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCG 161

Query: 57  EILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQ 116
           +     ++F  M +R+ VSWN  +G  ++ G +  + ++F++ P R   SW  +ISG  +
Sbjct: 162 QFERARRVFGAMAERDAVSWNIAIGACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMR 221

Query: 117 NGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSIL 176
           +G   +AL+  R M    +  N     +       L   D G  ++  +    ++ D+ +
Sbjct: 222 SGHAADALSHLRRMAQAGVVFNHYTYSTAFVLAGMLLLPDLGRQLHGRVLIAALEGDAFV 281

Query: 177 CAALIDMYAKCGSIDLAMQVFHSYG--DKDVS-AYTSAIFGLAMNGHSIEAFELFENMKS 233
            ++L+DMY KCG ++ A  VF  +    +D++ A+++ + G   NG   EA +LF  M  
Sbjct: 282 RSSLMDMYCKCGLLEAAASVFDHWSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLR 341

Query: 234 KGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLE 293
           +G++ D  +  +V +AC+++G VE+G    H   +    K +    + +VD+  + G LE
Sbjct: 342 EGVAADRFTLTSVAAACANVGMVEQG-RQVHGCVEKLWYKLDAPLASAIVDMYAKCGNLE 400

Query: 294 EAENFIASMPMKPDNVIWGTLL 315
           +A +       K +  +W ++L
Sbjct: 401 DARSIFDRACTK-NIAVWTSML 421



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 132/276 (47%), Gaps = 41/276 (14%)

Query: 78  SILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL-DLE 136
           S+L   VR     DA  VF++ P R+   W + ISG A+ GR  + +  F EM +  +  
Sbjct: 50  SVLRFWVRRRRFHDARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEAT 109

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
           PN+ +L +++  CA +G ++ G  V+ ++ +  + LD +LC A++DMYAKCG  + A +V
Sbjct: 110 PNAFVLAAVVRCCAGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRV 169

Query: 197 FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS-------- 248
           F +  ++D  ++  AI     +G  + + +LF+    +    D+ S+  ++S        
Sbjct: 170 FGAMAERDAVSWNIAIGACIQSGDILGSMQLFDESPLR----DTTSWNTIISGLMRSGHA 225

Query: 249 --ACSHLGWVEKG-----FYYFHSMFDVHG--IKPELDHY-----------------ACM 282
             A SHL  + +       Y + + F + G  + P+L                    + +
Sbjct: 226 ADALSHLRRMAQAGVVFNHYTYSTAFVLAGMLLLPDLGRQLHGRVLIAALEGDAFVRSSL 285

Query: 283 VDLLGRAGLLEEAEN-FIASMPMKPD-NVIWGTLLG 316
           +D+  + GLLE A + F    P+  D N  W T++ 
Sbjct: 286 MDMYCKCGLLEAAASVFDHWSPLTRDMNFAWSTMVA 321


>gi|218192417|gb|EEC74844.1| hypothetical protein OsI_10704 [Oryza sativa Indica Group]
          Length = 614

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/489 (40%), Positives = 293/489 (59%), Gaps = 7/489 (1%)

Query: 20  FYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM-----PQRNDV 74
            Y+ CGR  DA  +F+E    DVVSWN+MI+G+   G     + +F ++     P+ +  
Sbjct: 1   MYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAG 60

Query: 75  SWNSILG--GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQS 132
           +  SIL   G  R   +     VF++M    L+SW  +++ +  N    EA+ LF  MQ 
Sbjct: 61  TMASILPSMGKARVEDIALLKGVFDEMRFTGLISWNAMLAVYTNNEMHVEAVELFMRMQK 120

Query: 133 LDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDL 192
             +EP++  L ++L +C ++ AL  G  ++  I+++ +    +L  AL+DMYA CG +  
Sbjct: 121 DGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKE 180

Query: 193 AMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSH 252
           A  VF S G +DV ++TS I     +GH  EA +LFE M  +G+ PDSI+++A+L+ACSH
Sbjct: 181 ARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSH 240

Query: 253 LGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWG 312
            G ++ G +YF+SM     I P+L+HYACMVDLLGRAG + EA +FI  MP+KP+  +WG
Sbjct: 241 AGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPNERVWG 300

Query: 313 TLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRK 372
            LLGACR+H N ++G    + L+       G Y+LLSNIY    +  +   VR  M  + 
Sbjct: 301 ALLGACRIHSNMDIGLLAADSLLRLAPKQTGYYVLLSNIYARAGRWADVSMVRSVMESKG 360

Query: 373 IKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIE 432
           IK+ PG S  EL   VH F  GD SH +++ IY+   E++++I+  GYN E  + + D+E
Sbjct: 361 IKKLPGVSNAELGDSVHTFHIGDTSHPQSKMIYKKLSELLRRIREMGYNPEVEATLHDVE 420

Query: 433 EEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIR 492
           EE+KE  +  HSEKLA+AF LI T PG+ IRI  N+R CSDCH A KL+S +  R+I ++
Sbjct: 421 EEDKEGHLSVHSEKLAIAFLLINTNPGTPIRITMNLRTCSDCHHAAKLISTIAGREIILK 480

Query: 493 DRKHYHHFE 501
           D    H+ +
Sbjct: 481 DVNRIHYMK 489



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 100/218 (45%), Gaps = 20/218 (9%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM-- 68
           + ++N+L+  Y+ CG +++AR VFD     DVVSW S+I+ Y R+G   E + LF+KM  
Sbjct: 162 MLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCG 221

Query: 69  --PQRNDVSWNSILGGLVRFGSVDDACRVFNQM-------PKRSLVSWVVLISGFAQNGR 119
              + + +++ +IL      G +D     F  M       PK  L  +  ++    + G 
Sbjct: 222 QGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPK--LEHYACMVDLLGRAGC 279

Query: 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
            +EA   +  +  + ++PN  +  +LL AC     +D G      + +   K        
Sbjct: 280 IREA---YDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQTGYY-VL 335

Query: 180 LIDMYAKCG---SIDLAMQVFHSYGDKDVSAYTSAIFG 214
           L ++YA+ G    + +   V  S G K +   ++A  G
Sbjct: 336 LSNIYARAGRWADVSMVRSVMESKGIKKLPGVSNAELG 373


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/553 (37%), Positives = 313/553 (56%), Gaps = 42/553 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +VV      DV+V NS++  Y   G V  AR VFD     D+ SWN+M++G+V+NGE   
Sbjct: 149 LVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVKNGEARG 208

Query: 61  GLKLFDKMPQRNDVSWNSIL--------------------GGLVRFG------------- 87
             ++F  M +   V   + L                    G +VR G             
Sbjct: 209 AFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGRVCNGFLMNS 268

Query: 88  ---------SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPN 138
                    SV  A ++F  +  + +VSW  LISG+ + G   +AL LF  M  +   P+
Sbjct: 269 IIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVVVGAVPD 328

Query: 139 SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH 198
              ++S+L+AC Q+ AL  G  V SY+ K+   ++ ++  ALI MYA CGS+  A +VF 
Sbjct: 329 EVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGTALIGMYANCGSLVCACRVFD 388

Query: 199 SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEK 258
              +K++ A T  + G  ++G   EA  +F  M  KG++PD   + AVLSACSH G V++
Sbjct: 389 EMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSHSGLVDE 448

Query: 259 GFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
           G   F+ M   + ++P   HY+C+VDLLGRAG L+EA   I +M +KP+  +W  LL AC
Sbjct: 449 GKEIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDVWTALLSAC 508

Query: 319 RVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPG 378
           R+HRN ++       L E + +    Y+ LSNIY    + E+ E VR  + KR++++ P 
Sbjct: 509 RLHRNVKLAVISAQKLFELNPDGVSGYVCLSNIYAAERRWEDVENVRALVAKRRLRKPPS 568

Query: 379 CSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKET 438
            S +EL+ +VH+F  GD SHE++ +IY   +++ +++K  GY  +T  V++D+EEE KE 
Sbjct: 569 YSFVELNKMVHQFFVGDTSHEQSDDIYAKLKDLNEQLKKAGYKPDTSLVLYDVEEEIKEK 628

Query: 439 VIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYH 498
           ++  HSE+LALAF LI T PG+ IRI KN+R+C DCH+ +K++SK+  R+I +RD   +H
Sbjct: 629 MLWDHSERLALAFALINTGPGTTIRITKNLRVCGDCHTVIKMISKLTNREIIMRDICRFH 688

Query: 499 HFEDGSCSCLEYW 511
           HF DG CSC  YW
Sbjct: 689 HFRDGLCSCGGYW 701



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 85/164 (51%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           G +  A  +F+Q+  ++   W  +I G+A N  P  AL L+ +M     +P++     +L
Sbjct: 72  GHMPYAQHIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVL 131

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
            AC  L   + G  V++ +    ++ D  +  +++ MY K G ++ A  VF     +D++
Sbjct: 132 KACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLT 191

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250
           ++ + + G   NG +  AFE+F +M+  G   D  + +A+LSAC
Sbjct: 192 SWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSAC 235



 Score = 45.4 bits (106), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 72/174 (41%), Gaps = 7/174 (4%)

Query: 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFE 229
           ++ ++ L   L   YA CG +  A  +F     K+   + S I G A N     A  L+ 
Sbjct: 54  LRRNTYLATKLAACYAVCGHMPYAQHIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYL 113

Query: 230 NMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRA 289
            M   G  PD+ +Y  VL AC  L   E G    H++  V G++ ++     ++ +  + 
Sbjct: 114 KMLHFGQKPDNFTYPFVLKACGDLLLREMG-RKVHALVVVGGLEEDVYVGNSILSMYFKF 172

Query: 290 GLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDG 343
           G +E A      M ++ D   W T++         + G+  G   +  D   DG
Sbjct: 173 GDVEAARVVFDRMLVR-DLTSWNTMMSG-----FVKNGEARGAFEVFGDMRRDG 220


>gi|242096978|ref|XP_002438979.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
 gi|241917202|gb|EER90346.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
          Length = 723

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/449 (39%), Positives = 292/449 (65%), Gaps = 1/449 (0%)

Query: 47  SMINGYVRNGEILEGLKLFDKMPQ-RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           ++I+ Y + G+I +   +FD + + +    WN I+ G  + G VD A  +F+QM  R ++
Sbjct: 275 TLIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNVIIDGYCKLGHVDIARSLFDQMGARDVI 334

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           ++  +I+G+  +GR ++AL LF +++   +  ++  +VSLL+ACA LGAL  G  +++ I
Sbjct: 335 TFNSMITGYIHSGRLRDALQLFMQLRRHGMRADNFTVVSLLTACASLGALPQGRALHASI 394

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
           +++ ++ D  L  AL+DMY KCG +D A  VFH  G++DV  +++ I GLA NG  ++A 
Sbjct: 395 EQRIVEEDVYLVTALVDMYMKCGRVDEATAVFHRMGERDVHTWSAMIAGLAFNGMGMDAL 454

Query: 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL 285
           E F  MK  G  P S++YIAVL+ACSH   + +G  +F+ M  +H + P+++HY CM+DL
Sbjct: 455 ESFCQMKRDGFQPTSVTYIAVLTACSHSSLLNEGRQHFNEMRSLHKLHPQIEHYGCMIDL 514

Query: 286 LGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRY 345
           L R+GLL+EA + + +MPM+P+ VIW ++L ACRVH+N ++ +     L++     D  Y
Sbjct: 515 LARSGLLDEAMHLVQTMPMQPNAVIWASILSACRVHKNIDLARHAAEHLLKLAPEEDAVY 574

Query: 346 ILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIY 405
           + L NIY+++ +   A+ +R  M ++ +K+  G S I + G VH+F+  D+SH  T EI 
Sbjct: 575 VQLYNIYIDSRQWVEAKRIRMLMEEQGVKKTAGYSSITVAGQVHKFVVNDQSHPWTLEII 634

Query: 406 QFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIV 465
              EEI +++K+ GY+  T  +  D++EEEKE  +  HSEK+A+AFGLI   P   I I+
Sbjct: 635 TMMEEIARRLKSAGYSPATSRIAVDVDEEEKEQALLAHSEKIAIAFGLISLPPNLPIHIM 694

Query: 466 KNIRICSDCHSAMKLVSKVFKRKISIRDR 494
           KN+R+C DCHSA+KL+S+++ R+I +RDR
Sbjct: 695 KNLRVCEDCHSAIKLISQLWNREIIVRDR 723



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 152/289 (52%), Gaps = 33/289 (11%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N +I+ Y   G   +  + FD++P ++ V W +++GGLVR+G +D+A R+  Q P+R++V
Sbjct: 142 NPLIHMYASLGLTDDARRAFDEVPVKDAVVWATVIGGLVRWGLLDEARRLLVQAPERNVV 201

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           SW  LI+G+++ GRP +A+  F  M S  +EP+   ++  LSAC++L  L++G  ++  +
Sbjct: 202 SWTSLIAGYSRAGRPADAVYCFNCMLSDGVEPDEVAVIGALSACSKLKNLEFGRLLHLLV 261

Query: 166 QKKCIKLDSILCAALIDMYAKCGSI--------------------------------DLA 193
            KK I++   L   LIDMYAKCG I                                D+A
Sbjct: 262 GKKRIQMTDKLVVTLIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNVIIDGYCKLGHVDIA 321

Query: 194 MQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL 253
             +F   G +DV  + S I G   +G   +A +LF  ++  G+  D+ + +++L+AC+ L
Sbjct: 322 RSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQLRRHGMRADNFTVVSLLTACASL 381

Query: 254 GWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM 302
           G + +G    H+  +   ++ ++     +VD+  + G ++EA      M
Sbjct: 382 GALPQG-RALHASIEQRIVEEDVYLVTALVDMYMKCGRVDEATAVFHRM 429



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 104/206 (50%), Gaps = 19/206 (9%)

Query: 8   AYDVFVKNSLIQFYSVCGRVRDARWVFDE-------SDDLDVVSWNSMINGYVRNGEILE 60
           A DV   NS+I  Y   GR+RDA  +F +       +D+  VV   S++      G + +
Sbjct: 330 ARDVITFNSMITGYIHSGRLRDALQLFMQLRRHGMRADNFTVV---SLLTACASLGALPQ 386

Query: 61  GLKLFDKMPQR---NDVSWNSILGGL-VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQ 116
           G  L   + QR    DV   + L  + ++ G VD+A  VF++M +R + +W  +I+G A 
Sbjct: 387 GRALHASIEQRIVEEDVYLVTALVDMYMKCGRVDEATAVFHRMGERDVHTWSAMIAGLAF 446

Query: 117 NGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYS---YIQKKCIKLD 173
           NG   +AL  F +M+    +P S   +++L+AC+    L+ G   ++    + K   +++
Sbjct: 447 NGMGMDALESFCQMKRDGFQPTSVTYIAVLTACSHSSLLNEGRQHFNEMRSLHKLHPQIE 506

Query: 174 SILCAALIDMYAKCGSIDLAMQVFHS 199
              C  +ID+ A+ G +D AM +  +
Sbjct: 507 HYGC--MIDLLARSGLLDEAMHLVQT 530



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 89/177 (50%), Gaps = 16/177 (9%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DV++  +L+  Y  CGRV +A  VF    + DV +W++MI G   NG  ++ L+ F +M 
Sbjct: 402 DVYLVTALVDMYMKCGRVDEATAVFHRMGERDVHTWSAMIAGLAFNGMGMDALESFCQMK 461

Query: 70  ----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-------WVVLISGFAQNG 118
               Q   V++ ++L        +++  + FN+M  RSL         +  +I   A++G
Sbjct: 462 RDGFQPTSVTYIAVLTACSHSSLLNEGRQHFNEM--RSLHKLHPQIEHYGCMIDLLARSG 519

Query: 119 RPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI 175
              EA+ L   +Q++ ++PN+ I  S+LSAC     +D       ++ K   + D++
Sbjct: 520 LLDEAMHL---VQTMPMQPNAVIWASILSACRVHKNIDLARHAAEHLLKLAPEEDAV 573


>gi|296084465|emb|CBI25024.3| unnamed protein product [Vitis vinifera]
          Length = 621

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 213/549 (38%), Positives = 310/549 (56%), Gaps = 39/549 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++     D    N L+  YS CG V  AR +FDE     +VSWN+M+  + +NG+  + 
Sbjct: 73  IIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDCEKA 132

Query: 62  LKLFDKMPQR---------------------------------------NDVSWNSILGG 82
           L LF +M +                                        N     ++L  
Sbjct: 133 LVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDV 192

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G V DA  VF  MP+RS V+W  +++G+ QN   +EAL LF   Q++ LE N   +
Sbjct: 193 YAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTI 252

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S LSACA   AL  G  V +   K  I  +  + ++LIDMYAKCG I+ A  VF S  +
Sbjct: 253 SSALSACAARAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVEE 312

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           K+V  + + + G + +  S+EA   FE M+  GI P+ I+YI+VLSACSHLG VEKG  Y
Sbjct: 313 KNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSACSHLGLVEKGRKY 372

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F  M  VH + P + HY+CMVD+LGRAGLL EA++FI  MP      +WG+LL +CR++R
Sbjct: 373 FDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATASMWGSLLASCRIYR 432

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           N E+ +     L E + ++ G ++LLSNIY    + E     R  +++ K K+  G S I
Sbjct: 433 NLELAEVAAKHLFEIEPHNAGNHVLLSNIYAANDRWEEVARARNLLKESKAKKERGKSWI 492

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E+   VH F+ G+R+H +  EIY   E++V ++K  GY  +T   + D+EE  K+ ++ +
Sbjct: 493 EIKHKVHSFMVGERNHPRIVEIYLKLEDLVGEMKKIGYKAKTEHDLHDVEESRKQELLRH 552

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSEKLAL FG++    G+ IRI+KN+RIC DCHS MKL S + +R+I +RD   +HHF++
Sbjct: 553 HSEKLALTFGIMVLPHGAPIRIMKNLRICGDCHSFMKLASSITEREIIVRDTNRFHHFKN 612

Query: 503 GSCSCLEYW 511
           G CSC E+W
Sbjct: 613 GYCSCGEFW 621



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 135/278 (48%), Gaps = 6/278 (2%)

Query: 48  MINGYVRNGEILEGLKLFDKMPQ---RND-VSWNSILGGLVRFGSVDDACRVFNQMPKRS 103
           ++    RN   +EG+    ++ +   R D ++ N ++    + G V+ A ++F++MP RS
Sbjct: 53  LLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRS 112

Query: 104 LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYS 163
           LVSW  ++    QNG  ++AL LF +MQ      +   + S++ ACA    +     ++ 
Sbjct: 113 LVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHG 172

Query: 164 YIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIE 223
           +  K  +  +  +  AL+D+YAKCG +  A  VF    ++    ++S + G   N    E
Sbjct: 173 FALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEE 232

Query: 224 AFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMV 283
           A  LF   ++ G+  +  +  + LSAC+    + +G     ++    GI   +   + ++
Sbjct: 233 ALVLFHRAQAMGLEHNQFTISSALSACAARAALIEG-KQVQAVSCKTGIGSNIFVISSLI 291

Query: 284 DLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           D+  + G++EEA    +S+  K + V+W  +L     H
Sbjct: 292 DMYAKCGIIEEAYTVFSSVEEK-NVVLWNAILSGFSRH 328



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 82/180 (45%), Gaps = 10/180 (5%)

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           L  LL + A+  A   G   ++ I +  ++ D+I    L++MY+KCG ++ A ++F    
Sbjct: 50  LQHLLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMP 109

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
            + + ++ + +     NG   +A  LF  M+ +G S    +  +V+ AC+      K   
Sbjct: 110 VRSLVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACA-----AKCCV 164

Query: 262 YFHSMFDVHGIKPELDHY----ACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
           +         +K  LD        ++D+  + GL+++A      MP + D V W +++  
Sbjct: 165 FECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSD-VTWSSMVAG 223


>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
 gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 681

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/541 (38%), Positives = 307/541 (56%), Gaps = 40/541 (7%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DVFV +SL+  Y+  G + DA  VF      D V+W++M+ G+V  G+ L+ ++++ +M 
Sbjct: 142 DVFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMR 201

Query: 70  Q--------------------RNDVSWNSILGGLVRFGS-------------------VD 90
           +                    RN     S+ G L+R G                    +D
Sbjct: 202 EDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLD 261

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
            ACRVF  M  R+ VSW  +ISGFAQNG+  EAL LFR MQ+  ++P+S  LVS L AC+
Sbjct: 262 VACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACS 321

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
            +G L  G  V+ +I ++    + IL  A IDMY+KCGS+  A  +F+   D+D+  + +
Sbjct: 322 NIGFLKLGRSVHGFIVRR-FDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNA 380

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I     +G   +A  LF+ M   G+ PD  ++ ++LSA SH G VE+G  +F  M +  
Sbjct: 381 MIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHF 440

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
            I P   HY C+VDLL R+GL+EEA + + SM  +P   IW  LL  C  ++  E+G+ I
Sbjct: 441 KITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESI 500

Query: 331 GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHE 390
            + ++E   +  G   L+SN+Y  T K +   +VRK M+    K+ PGCS IE+ G  H 
Sbjct: 501 ADNILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHV 560

Query: 391 FLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALA 450
           F+  D+SH + +EI     ++  +++  GY   T  V  D+EEE KE  + YHSE+LA+A
Sbjct: 561 FVMEDQSHPQREEIVSKVAKLDLEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSERLAIA 620

Query: 451 FGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEY 510
           FGL+ T PG+ + I+KN+R+C DCH A+K +SK+  R+I +RD K +HHF+DG CSC +Y
Sbjct: 621 FGLLNTGPGTRLVIIKNLRVCGDCHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDY 680

Query: 511 W 511
           W
Sbjct: 681 W 681



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 151/276 (54%), Gaps = 14/276 (5%)

Query: 51  GYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVL 110
           G +R GE +   + FD   + +    +S+L    R+G++ DA +VF +MP+R  V+W  +
Sbjct: 122 GDLRGGESVRD-RAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTM 180

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCI 170
           ++GF   G+P +A+ ++R M+   ++ +  +++ ++ AC     +  G  V+ ++ +  +
Sbjct: 181 VAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGM 240

Query: 171 KLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFEN 230
           ++D +   +L+DMYAK G +D+A +VF     ++  ++++ I G A NG S EA  LF N
Sbjct: 241 RMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRN 300

Query: 231 MKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACM-----VDL 285
           M++ GI PDS + ++ L ACS++G+++ G         VHG       + C+     +D+
Sbjct: 301 MQASGIQPDSGALVSALLACSNIGFLKLG-------RSVHGFIVRRFDFNCILGTAAIDM 353

Query: 286 LGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
             + G L  A+  + +M    D ++W  ++  C  H
Sbjct: 354 YSKCGSLASAQ-MLFNMISDRDLILWNAMIACCGAH 388



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 96/201 (47%), Gaps = 3/201 (1%)

Query: 115 AQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDS 174
           ++ G P  AL +FR +      P+S      LSACA+LG L  G  V         K D 
Sbjct: 85  SRRGSPASALRVFRALPPA-ARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDV 143

Query: 175 ILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK 234
            +C++L+ +YA+ G++  A++VF     +D   +++ + G    G  ++A +++  M+  
Sbjct: 144 FVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMRED 203

Query: 235 GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEE 294
           G+  D +  I V+ AC+    V  G    H     HG++ ++     +VD+  + GLL+ 
Sbjct: 204 GVKGDEVVMIGVIQACTAARNVRMG-ASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDV 262

Query: 295 AENFIASMPMKPDNVIWGTLL 315
           A      M  + D V W  ++
Sbjct: 263 ACRVFGLMVHRND-VSWSAMI 282



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 123/287 (42%), Gaps = 42/287 (14%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++++    DV    SL+  Y+  G +  A  VF      + VSW++MI+G+ +NG+  E 
Sbjct: 235 LLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEA 294

Query: 62  LKLFDKM------PQRNDV---------------------------SWNSILGGLV---- 84
           L+LF  M      P    +                            +N ILG       
Sbjct: 295 LRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDFNCILGTAAIDMY 354

Query: 85  -RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
            + GS+  A  +FN +  R L+ W  +I+    +GR ++AL LF+EM    + P+ A   
Sbjct: 355 SKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFA 414

Query: 144 SLLSACAQLGALDYGN-WVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           SLLSA +  G ++ G  W    +    I         L+D+ A+ G ++ A  +  S   
Sbjct: 415 SLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKA 474

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFE-LFENMKSKGISPDSISYIAVLS 248
           +   A   A+    +N   +E  E + +N+    + PD +  +A++S
Sbjct: 475 EPTVAIWVALLSGCLNNKKLELGESIADNILE--LQPDDVGVLALVS 519


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 192/520 (36%), Positives = 306/520 (58%), Gaps = 39/520 (7%)

Query: 31  RWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP----QRNDVSWNSIL------ 80
           R VF+     D+VSWN++I+G  +NG   + L +  +M     + +  + +S+L      
Sbjct: 190 RKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEY 249

Query: 81  ----------GGLVRFG-------------------SVDDACRVFNQMPKRSLVSWVVLI 111
                     G  +R G                    VDD+CRVF  +P+   +SW  +I
Sbjct: 250 VNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSII 309

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK 171
           +G  QNG   E L  F++M    ++PN     S++ ACA L  L  G  ++ YI +    
Sbjct: 310 AGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFD 369

Query: 172 LDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM 231
            +  + +AL+DMYAKCG+I  A  +F      D+ ++T+ I G A++GH+ +A  LF+ M
Sbjct: 370 GNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRM 429

Query: 232 KSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGL 291
           + +G+ P+ ++++AVL+ACSH G V++ + YF+SM   + I P L+HYA + DLLGR G 
Sbjct: 430 EVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGR 489

Query: 292 LEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNI 351
           LEEA  FI+ M ++P   +W TLL ACRVH+N E+ +++   L   D  + G Y+LLSNI
Sbjct: 490 LEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNI 549

Query: 352 YVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEI 411
           Y    + ++A ++R  MR + +K+ P CS IE+   VH F+AGD+SH     I +  + +
Sbjct: 550 YSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVL 609

Query: 412 VKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRIC 471
           +++++  GY ++T  V+ D+EEE+K  ++  HSE+LA+ FG+I T  G+ IR+ KN+R+C
Sbjct: 610 LEQMEREGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITFGIISTPAGTTIRVTKNLRVC 669

Query: 472 SDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            DCH+A K +SK+  R+I +RD   +HHF+DG CSC ++W
Sbjct: 670 VDCHTATKFISKIVGREIVVRDNSRFHHFKDGKCSCGDFW 709



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 147/330 (44%), Gaps = 49/330 (14%)

Query: 2   VVKNSFAYDVFVKNSLIQFYS---VCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEI 58
           +++    +D++  N+L+  YS       V   + VFDE    DV S     + Y+ +   
Sbjct: 132 IIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLR- 190

Query: 59  LEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNG 118
               K+F+ MP+R+ VSWN++                               ISG AQNG
Sbjct: 191 ----KVFEMMPKRDIVSWNTV-------------------------------ISGNAQNG 215

Query: 119 RPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCA 178
             ++AL + REM + DL P+S  L S+L   A+   L  G  ++ Y  +     D  + +
Sbjct: 216 MHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGS 275

Query: 179 ALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISP 238
           +LIDMYAKC  +D + +VF+     D  ++ S I G   NG   E  + F+ M    I P
Sbjct: 276 SLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKP 335

Query: 239 DSISYIAVLSACSHLGWVEKG----FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEE 294
           + +S+ +++ AC+HL  +  G     Y   S FD +         + +VD+  + G +  
Sbjct: 336 NHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIA-----SALVDMYAKCGNIRT 390

Query: 295 AENFIASMPMKPDNVIWGTLLGACRVHRNA 324
           A      M +  D V W  ++    +H +A
Sbjct: 391 ARWIFDKMELY-DMVSWTAMIMGYALHGHA 419



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 114/234 (48%), Gaps = 42/234 (17%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           ++N +  DVF+ +SLI  Y+ C RV D+  VF      D +SWNS+I G V+NG   EGL
Sbjct: 263 IRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGL 322

Query: 63  KLFDKM----PQRNDVSWNSIL----------------GGLVRF---------------- 86
           K F +M     + N VS++SI+                G ++R                 
Sbjct: 323 KFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMY 382

Query: 87  ---GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
              G++  A  +F++M    +VSW  +I G+A +G   +A++LF+ M+   ++PN    +
Sbjct: 383 AKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFM 442

Query: 144 SLLSACAQLGALDYGNWVY--SYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ 195
           ++L+AC+  G +D   W Y  S  Q   I       AA+ D+  + G ++ A +
Sbjct: 443 AVLTACSHAGLVDEA-WKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYE 495



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 85/157 (54%), Gaps = 12/157 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++++ F  +VF+ ++L+  Y+ CG +R ARW+FD+ +  D+VSW +MI GY  +G   + 
Sbjct: 363 IIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDA 422

Query: 62  LKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPK-----RSLVSWVVLIS 112
           + LF +M     + N V++ ++L      G VD+A + FN M +       L  +  +  
Sbjct: 423 ISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVAD 482

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
              + GR +EA     +M    +EP  ++  +LL+AC
Sbjct: 483 LLGRVGRLEEAYEFISDMH---IEPTGSVWSTLLAAC 516



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/272 (19%), Positives = 114/272 (41%), Gaps = 32/272 (11%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMP-KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDL 135
           ++IL        + D+  +FN +P   + ++W  +I  +  +G    +L+ F +M +   
Sbjct: 43  STILSIYSNLNLLHDSLLIFNSLPSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGK 102

Query: 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLA-- 193
            P+  +  S+L +C  +  L +G  V+  I +  +  D   C AL++MY+K  S++    
Sbjct: 103 YPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNT 162

Query: 194 ---------------------------MQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFE 226
                                       +VF     +D+ ++ + I G A NG   +A  
Sbjct: 163 YKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALM 222

Query: 227 LFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLL 286
           +   M +  + PDS +  +VL   +    + KG    H     +G   ++   + ++D+ 
Sbjct: 223 MVREMGNADLRPDSFTLSSVLPIFAEYVNLLKG-KEIHGYAIRNGYDADVFIGSSLIDMY 281

Query: 287 GRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
            +   ++++      +P + D + W +++  C
Sbjct: 282 AKCTRVDDSCRVFYMLP-QHDGISWNSIIAGC 312


>gi|212274581|ref|NP_001130403.1| uncharacterized protein LOC100191499 [Zea mays]
 gi|194689034|gb|ACF78601.1| unknown [Zea mays]
 gi|413932819|gb|AFW67370.1| hypothetical protein ZEAMMB73_996266 [Zea mays]
          Length = 606

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 191/430 (44%), Positives = 265/430 (61%), Gaps = 14/430 (3%)

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
           V FG  D  C          +VS+  +I+   ++ RP EAL LFREMQ+  L P    ++
Sbjct: 189 VTFGRADGDC----------VVSYNAMIAAAVRSSRPGEALVLFREMQAKGLNPTPVTVI 238

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           S+LSACA LGAL  G W++ Y++K  +     +  AL+DMYAKCGS++ A+ VF     +
Sbjct: 239 SVLSACALLGALQLGRWLHDYVRKLGLGSLVKVSTALVDMYAKCGSLEDAIAVFQGMESR 298

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           D  A++  I   A +G+  EA  LFE MK +G+ PD I+++ +L ACSH G V +G  YF
Sbjct: 299 DRQAWSVMIVAYANHGYGREAISLFEEMKKQGMKPDDITFLGLLYACSHSGLVSEGLRYF 358

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
             M D HGI P + HY C+ DLL R+G LE A  FI  +P+ P  ++W TLL AC  H +
Sbjct: 359 DDMKD-HGIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTPILWRTLLSACGGHGD 417

Query: 324 AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE 383
            E+G+R+   ++E D +H G Y++ SN+   T   E    VRK M  + + + PGCS IE
Sbjct: 418 VELGKRVFERILELDDSHGGDYVIFSNLCANTGYWEEMNRVRKLMSDKGVVKVPGCSSIE 477

Query: 384 LDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIE--EEEKETVIG 441
           +D  VHEF AGD  H K+QE  +  +E++ ++K  GY  +T  V F +E  EEEK   + 
Sbjct: 478 IDNTVHEFFAGDGRHPKSQEARKMVDEVIDQLKLVGYIPDTSHV-FHVEMGEEEKAISLK 536

Query: 442 YHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
           YHSEKLA+AFGL+ T PG+ +R+VKN+R+C DCHS  K VS VF R+I +RD   +HHFE
Sbjct: 537 YHSEKLAIAFGLLNTAPGATLRVVKNLRVCPDCHSMAKFVSMVFNRRIILRDLNRFHHFE 596

Query: 502 DGSCSCLEYW 511
            G CSC +YW
Sbjct: 597 RGICSCGDYW 606



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 125/313 (39%), Gaps = 76/313 (24%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + VK   A   +V+ +LI  Y+ CG  R AR  F  +D   VVS+N+MI   VR+    E
Sbjct: 158 VAVKLGAAGHDYVRPTLINMYAECGDARAARVTFGRADGDCVVSYNAMIAAAVRSSRPGE 217

Query: 61  GLKLFDKMPQR----NDVSWNSI------------------------LGGLVRF------ 86
            L LF +M  +      V+  S+                        LG LV+       
Sbjct: 218 ALVLFREMQAKGLNPTPVTVISVLSACALLGALQLGRWLHDYVRKLGLGSLVKVSTALVD 277

Query: 87  -----GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
                GS++DA  VF  M  R   +W V+I  +A +G  +EA++LF EM+   ++P+   
Sbjct: 278 MYAKCGSLEDAIAVFQGMESRDRQAWSVMIVAYANHGYGREAISLFEEMKKQGMKPDDIT 337

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
            + LL AC+  G +  G   +  ++   I         + D+ A+ G ++          
Sbjct: 338 FLGLLYACSHSGLVSEGLRYFDDMKDHGIVPGIKHYGCVTDLLARSGQLE---------- 387

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
                                 A++  + +    I+P  I +  +LSAC   G VE G  
Sbjct: 388 ---------------------RAYKFIDELP---INPTPILWRTLLSACGGHGDVELGKR 423

Query: 262 YFHSMF---DVHG 271
            F  +    D HG
Sbjct: 424 VFERILELDDSHG 436



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 107/232 (46%), Gaps = 8/232 (3%)

Query: 92  ACRVFNQMPKRSLVSWV-VLISGFAQNGRPKEA-----LALFREMQSLDLEPNSAILVSL 145
           A +VF+++ + S   W   L+ G+A++     +     + +F  M    + P++   VSL
Sbjct: 80  ARQVFDRVTQPSDAVWYNTLLRGYARSSSSSSSSSAAAVRVFVRMLEEGVAPDTYTFVSL 139

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
           L ACA   A ++G   ++   K        +   LI+MYA+CG    A   F       V
Sbjct: 140 LKACAAARAGEHGRQAHAVAVKLGAAGHDYVRPTLINMYAECGDARAARVTFGRADGDCV 199

Query: 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHS 265
            +Y + I     +    EA  LF  M++KG++P  ++ I+VLSAC+ LG ++ G  + H 
Sbjct: 200 VSYNAMIAAAVRSSRPGEALVLFREMQAKGLNPTPVTVISVLSACALLGALQLG-RWLHD 258

Query: 266 MFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
                G+   +     +VD+  + G LE+A      M  + D   W  ++ A
Sbjct: 259 YVRKLGLGSLVKVSTALVDMYAKCGSLEDAIAVFQGMESR-DRQAWSVMIVA 309


>gi|224074129|ref|XP_002304264.1| predicted protein [Populus trichocarpa]
 gi|222841696|gb|EEE79243.1| predicted protein [Populus trichocarpa]
          Length = 499

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/477 (42%), Positives = 292/477 (61%), Gaps = 6/477 (1%)

Query: 41  DVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDD----ACRVF 96
           D VS + +I  Y+R   ++ G ++  ++      S + +L  L+   S+ D    AC+VF
Sbjct: 23  DPVSLSFVIRCYIRICSLIGGEQVHARILSDGHQSDSLLLTNLMDLYSLCDKGSEACKVF 82

Query: 97  NQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDL--EPNSAILVSLLSACAQLGA 154
           ++M +R  ++W VLIS + +N R ++ L +F  M S +L  EP+    + LL ACA LGA
Sbjct: 83  DEMRQRDTIAWNVLISCYMRNRRTRDVLVIFDGMLSGELGCEPDDVTCLLLLQACANLGA 142

Query: 155 LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFG 214
           L++G  V+ +I ++     + LC +LI MY++ G++D A  VF    +K+V  +++ I G
Sbjct: 143 LEFGEKVHGHIVERGYDNATNLCNSLIAMYSQFGNLDKAFGVFKGMHNKNVVTWSAIISG 202

Query: 215 LAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP 274
           LAMNG+  EA   FE M   G+ PD +++  VLSACS+ G V+KG   F  M    GI P
Sbjct: 203 LAMNGYGREAIGAFEEMLKMGVLPDDLTFTGVLSACSNCGLVDKGMIIFARMSKEFGIVP 262

Query: 275 ELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNML 334
            + HY CMVDLLGRAG L +A   I SM +KPD+ IW TLLGACR+HRN  +G+ +   L
Sbjct: 263 NIHHYGCMVDLLGRAGQLHQAYQLIMSMRVKPDSTIWRTLLGACRIHRNVILGEHVVEHL 322

Query: 335 IESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAG 394
           IE      G Y+LL N+Y      +   E+RK M+++ I+  P  S IEL G VHEF+  
Sbjct: 323 IELKAQEAGDYVLLFNLYSSVDNWKKVTELRKFMKEKGIQTTPASSSIELKGKVHEFVVD 382

Query: 395 DRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLI 454
           D SH +  EIY+  +EI K++K  GY  E  S + +++ EEK  V+ YHSEKLA+AFG++
Sbjct: 383 DVSHPQKDEIYEMLDEISKQLKIAGYVAEITSELPNLDAEEKRYVLSYHSEKLAIAFGVL 442

Query: 455 CTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            T PG+ IRI KN+RIC DCH+  K++S V+ R++ I D   +HHF  G CSC +YW
Sbjct: 443 ATPPGTTIRIAKNLRICVDCHNFAKILSGVYNRQVIITDHTRFHHFRGGHCSCNDYW 499



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 114/255 (44%), Gaps = 42/255 (16%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++ +    D  +  +L+  YS+C +  +A  VFDE    D ++WN +I+ Y+RN    + 
Sbjct: 50  ILSDGHQSDSLLLTNLMDLYSLCDKGSEACKVFDEMRQRDTIAWNVLISCYMRNRRTRDV 109

Query: 62  LKLFDKM------PQRNDVS-----------------------------------WNSIL 80
           L +FD M       + +DV+                                    NS++
Sbjct: 110 LVIFDGMLSGELGCEPDDVTCLLLLQACANLGALEFGEKVHGHIVERGYDNATNLCNSLI 169

Query: 81  GGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
               +FG++D A  VF  M  +++V+W  +ISG A NG  +EA+  F EM  + + P+  
Sbjct: 170 AMYSQFGNLDKAFGVFKGMHNKNVVTWSAIISGLAMNGYGREAIGAFEEMLKMGVLPDDL 229

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI-LCAALIDMYAKCGSIDLAMQVFHS 199
               +LSAC+  G +D G  +++ + K+   + +I     ++D+  + G +  A Q+  S
Sbjct: 230 TFTGVLSACSNCGLVDKGMIIFARMSKEFGIVPNIHHYGCMVDLLGRAGQLHQAYQLIMS 289

Query: 200 YGDKDVSAYTSAIFG 214
              K  S     + G
Sbjct: 290 MRVKPDSTIWRTLLG 304



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 2/142 (1%)

Query: 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
           P E   +++EM+   L  +   L  ++    ++ +L  G  V++ I     + DS+L   
Sbjct: 5   PTEGFFMYQEMRKKGLRADPVSLSFVIRCYIRICSLIGGEQVHARILSDGHQSDSLLLTN 64

Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK--GIS 237
           L+D+Y+ C     A +VF     +D  A+   I     N  + +   +F+ M S   G  
Sbjct: 65  LMDLYSLCDKGSEACKVFDEMRQRDTIAWNVLISCYMRNRRTRDVLVIFDGMLSGELGCE 124

Query: 238 PDSISYIAVLSACSHLGWVEKG 259
           PD ++ + +L AC++LG +E G
Sbjct: 125 PDDVTCLLLLQACANLGALEFG 146


>gi|387169573|gb|AFJ66232.1| hypothetical protein 34G24.32 [Capsella rubella]
          Length = 598

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/437 (44%), Positives = 290/437 (66%), Gaps = 6/437 (1%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL-DL 135
           N I+  L++ G    A +V  +   +++++W ++I G+ +N + +EAL   + M S  D+
Sbjct: 166 NIIIESLMKTGEYGLAKKVLRRASDQNVITWNLMIGGYVRNVQYEEALKTLKNMLSFSDI 225

Query: 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ 195
           +PN     S L+ACA+LG L +  WV+S +    I+L++IL +AL+D+YAKCG I+ + +
Sbjct: 226 KPNKFSFASALAACARLGDLHHAKWVHSLMIDAGIELNTILSSALVDVYAKCGDIETSRE 285

Query: 196 VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGW 255
           VF+S    DVS + + I G A +G + EA  +F  M+++ +SPDSI+++ +L+ACSH G 
Sbjct: 286 VFYSVKWNDVSIWNAMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGILTACSHCGL 345

Query: 256 VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
           +E+G  +F  M     I+P+L+HY  MVDLLGRAG ++EA + I SMP++PD VIW +LL
Sbjct: 346 LEEGKEFFGLMSQRFSIQPKLEHYGAMVDLLGRAGQVKEAYDLIESMPIEPDVVIWRSLL 405

Query: 316 GACRVHRNAEMGQ-RIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIK 374
            + R ++N E+G+  I N+     +   G Y+LLSNIY  T K ENA++VR+ M K  I+
Sbjct: 406 SSARTYKNPELGEIAIQNL----SKAKSGDYVLLSNIYSSTKKWENAQKVRELMTKEGIR 461

Query: 375 RAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEE 434
           +A G S +E  GV+H F AGD SH  T+ IY+  E +++K K+ G+  +T  V+ D+ EE
Sbjct: 462 KAKGKSWVEFGGVIHRFKAGDTSHIDTKAIYKVLEGLIQKAKSEGFVSDTDLVLMDVSEE 521

Query: 435 EKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDR 494
           EKE  + YHSEKLALA+ ++ + PGS IRI KNIR+CSDCH+ +K VSK+  R I +RDR
Sbjct: 522 EKEENLNYHSEKLALAYVILKSSPGSEIRIQKNIRMCSDCHNWIKAVSKLLNRVIIMRDR 581

Query: 495 KHYHHFEDGSCSCLEYW 511
             +H FEDG CSC +YW
Sbjct: 582 IRFHRFEDGLCSCKDYW 598



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 98/235 (41%), Gaps = 41/235 (17%)

Query: 6   SFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLF 65
           S +  V   N +I+     G    A+ V   + D +V++WN MI GYVRN +  E LK  
Sbjct: 157 SLSPGVSNTNIIIESLMKTGEYGLAKKVLRRASDQNVITWNLMIGGYVRNVQYEEALKTL 216

Query: 66  DKMPQRNDV-----SWNSILGGLVRFGSVD----------DACRVFNQMPKRSLVS---- 106
             M   +D+     S+ S L    R G +           DA    N +   +LV     
Sbjct: 217 KNMLSFSDIKPNKFSFASALAACARLGDLHHAKWVHSLMIDAGIELNTILSSALVDVYAK 276

Query: 107 ---------------------WVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
                                W  +I+GFA +G   EA+ +F EM++  + P+S   + +
Sbjct: 277 CGDIETSREVFYSVKWNDVSIWNAMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGI 336

Query: 146 LSACAQLGALDYGNWVYSYI-QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
           L+AC+  G L+ G   +  + Q+  I+       A++D+  + G +  A  +  S
Sbjct: 337 LTACSHCGLLEEGKEFFGLMSQRFSIQPKLEHYGAMVDLLGRAGQVKEAYDLIES 391



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 75/158 (47%), Gaps = 12/158 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +++      +  + ++L+  Y+ CG +  +R VF      DV  WN+MI G+  +G   E
Sbjct: 254 LMIDAGIELNTILSSALVDVYAKCGDIETSREVFYSVKWNDVSIWNAMITGFATHGLATE 313

Query: 61  GLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLI 111
            +++F +M       + +++  IL      G +++    F  M +R      L  +  ++
Sbjct: 314 AIRVFSEMEAEHVSPDSITFLGILTACSHCGLLEEGKEFFGLMSQRFSIQPKLEHYGAMV 373

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
               + G+ KEA  L   ++S+ +EP+  I  SLLS+ 
Sbjct: 374 DLLGRAGQVKEAYDL---IESMPIEPDVVIWRSLLSSA 408


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/565 (35%), Positives = 317/565 (56%), Gaps = 65/565 (11%)

Query: 12   FVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQR 71
            FV  +L+  Y  C + +  R VFD      V  WN+++ GY RN    + L+LF +M   
Sbjct: 571  FVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEMISE 630

Query: 72   -----NDVSWNSILGGLVR-----------------------------------FGSVDD 91
                 N  ++ S+L   VR                                    G V+ 
Sbjct: 631  SEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEI 690

Query: 92   ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQ------------------SL 133
            +  +F +M KR +VSW  +I+G    GR  +AL L  EMQ                   +
Sbjct: 691  SKTIFGRMNKRDIVSWNTMITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGV 750

Query: 134  DLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLA 193
              +PNS  L+++L  CA L AL  G  +++Y  K+ + +D  + +AL+DMYAKCG ++LA
Sbjct: 751  PFKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLA 810

Query: 194  MQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG------ISPDSISYIAVL 247
             +VF     ++V  +   I    M+G   EA ELF  M + G      I P+ ++YIA+ 
Sbjct: 811  SRVFDQMPIRNVITWNVLIMAYGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYIAIF 870

Query: 248  SACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPD 307
            +ACSH G V++G + FH+M   HG++P  DHYAC+VDLLGR+G ++EA   I +MP   +
Sbjct: 871  AACSHSGMVDEGLHLFHTMKASHGVEPRGDHYACLVDLLGRSGRVKEAYELINTMPSNLN 930

Query: 308  NV-IWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRK 366
             V  W +LLGACR+H++ E G+     L   + N    Y+L+SNIY      + A  VRK
Sbjct: 931  KVDAWSSLLGACRIHQSVEFGEIAAKHLFVLEPNVASHYVLMSNIYSSAGLWDQALGVRK 990

Query: 367  TMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRS 426
             M++  +++ PGCS IE    VH+FL+GD SH +++E++++ E + ++++  GY  +   
Sbjct: 991  KMKEMGVRKEPGCSWIEHGDEVHKFLSGDASHPQSKELHEYLETLSQRMRKEGYVPDISC 1050

Query: 427  VMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFK 486
            V+ ++++EEKET++  HSE+LA+AFGL+ T PG+ IR+ KN+R+C+DCH A K++SK+  
Sbjct: 1051 VLHNVDDEEKETMLCGHSERLAIAFGLLNTPPGTTIRVAKNLRVCNDCHVATKIISKIVD 1110

Query: 487  RKISIRDRKHYHHFEDGSCSCLEYW 511
            R+I +RD + +HHF +G+CSC +YW
Sbjct: 1111 REIILRDVRRFHHFANGTCSCGDYW 1135



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 101/357 (28%), Positives = 148/357 (41%), Gaps = 55/357 (15%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ 70
           V V NSL+  Y  CG +  AR VFD+  D D VSWNSMI    R  E    L LF  M  
Sbjct: 367 VAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRFEEWELSLHLFRLMLS 426

Query: 71  RN---------------------------------------DVSWNSILGGLVRFGSVDD 91
            N                                         + N+++    R G V+D
Sbjct: 427 ENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNGDLRTYTNNALVTMYARLGRVND 486

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           A  +F     + LVSW  +IS  +QN R +EAL     M    + P+   L S+L AC+Q
Sbjct: 487 AKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQ 546

Query: 152 LGALDYGNWVYSY-IQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
           L  L  G  ++ Y ++   +  +S +  AL+DMY  C        VF     + V+ + +
Sbjct: 547 LERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNA 606

Query: 211 AIFGLAMNGHSIEAFELFENMKSKG-ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDV 269
            + G A N    +A  LF  M S+    P++ ++ +VL AC            F     +
Sbjct: 607 LLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCK-------VFSDKEGI 659

Query: 270 HG--IKPEL--DHYA--CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
           HG  +K     D Y    ++D+  R G +E ++     M  K D V W T++  C V
Sbjct: 660 HGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRM-NKRDIVSWNTMITGCIV 715



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 103/221 (46%), Gaps = 33/221 (14%)

Query: 34  FDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDAC 93
           F  +    V   NS++N Y + G++    ++FD +P R+ VSWNS++  L RF       
Sbjct: 359 FGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRFE------ 412

Query: 94  RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQL- 152
                        W +             +L LFR M S +++P S  LVS+  AC+ + 
Sbjct: 413 ------------EWEL-------------SLHLFRLMLSENVDPTSFTLVSVAHACSHVR 447

Query: 153 GALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAI 212
           G +  G  V++Y  +    L +    AL+ MYA+ G ++ A  +F  +  KD+ ++ + I
Sbjct: 448 GGVRLGKQVHAYTLRNG-DLRTYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVI 506

Query: 213 FGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL 253
             L+ N    EA      M   G+ PD ++  +VL ACS L
Sbjct: 507 SSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQL 547



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 143/358 (39%), Gaps = 99/358 (27%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +VK  F  D +V+N+L+  YS  GRV  ++ +F   +  D+VSWN+MI G +  G   + 
Sbjct: 663 IVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRYDDA 722

Query: 62  LKLFDKMPQR----------------------NDVSWNSILGG----------------- 82
           L L  +M +R                      N V+  ++L G                 
Sbjct: 723 LNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKGKEIHAYA 782

Query: 83  ------------------LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEAL 124
                               + G ++ A RVF+QMP R++++W VLI  +  +G+ +EAL
Sbjct: 783 VKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITWNVLIMAYGMHGKGEEAL 842

Query: 125 ALFREMQSLD------LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCA 178
            LFR M +        + PN    +++ +AC+  G +D G  ++  ++            
Sbjct: 843 ELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGLHLFHTMK------------ 890

Query: 179 ALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISP 238
                         A       GD     Y   +  L  +G   EA+EL   M S     
Sbjct: 891 --------------ASHGVEPRGDH----YACLVDLLGRSGRVKEAYELINTMPSNLNKV 932

Query: 239 DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPEL-DHYACMVDLLGRAGLLEEA 295
           D+ S  ++L AC     VE G      +F    ++P +  HY  M ++   AGL ++A
Sbjct: 933 DAWS--SLLGACRIHQSVEFGEIAAKHLFV---LEPNVASHYVLMSNIYSSAGLWDQA 985



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 102/222 (45%), Gaps = 10/222 (4%)

Query: 101 KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNW 160
           +RS   W+ L+     +   ++A++ +  M +    P++    ++L A A +  L  G  
Sbjct: 292 RRSPSQWIDLLRSQTHSSSFRDAISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLGKQ 351

Query: 161 VYSYIQKKCIKLDSILCAA--LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
           +++++ K      S +  A  L++MY KCG +  A QVF    D+D  ++ S I  L   
Sbjct: 352 IHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRF 411

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHL-GWVEKGFYYFHSMFDVHGIKPELD 277
                +  LF  M S+ + P S + ++V  ACSH+ G V  G    H+    +G   +L 
Sbjct: 412 EEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLG-KQVHAYTLRNG---DLR 467

Query: 278 HYA--CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
            Y    +V +  R G + +A+        K D V W T++ +
Sbjct: 468 TYTNNALVTMYARLGRVNDAKALFGVFDGK-DLVSWNTVISS 508


>gi|15242278|ref|NP_197038.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180838|sp|Q9LXE8.1|PP386_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g15340, mitochondrial; Flags: Precursor
 gi|7671503|emb|CAB89344.1| putative protein [Arabidopsis thaliana]
 gi|332004768|gb|AED92151.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/476 (41%), Positives = 306/476 (64%), Gaps = 12/476 (2%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N++++ Y + G + E  ++F+++ +++ VSW  +L  +V++  ++    VF++MP+R+ V
Sbjct: 150 NALMDMYGKCGLVSEVKRIFEELEEKSVVSWTVVLDTVVKWEGLERGREVFHEMPERNAV 209

Query: 106 SWVVLISGFAQNGRPKEALALFREMQ-SLDLEPNSAILVSLLSACAQLGALDYGNWVYSY 164
           +W V+++G+   G  +E L L  EM        N   L S+LSACAQ G L  G WV+ Y
Sbjct: 210 AWTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVVGRWVHVY 269

Query: 165 IQKKCIKL-------DSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAM 217
             KK + +       D ++  AL+DMYAKCG+ID +M VF     ++V  + +   GLAM
Sbjct: 270 ALKKEMMMGEEASYDDVMVGTALVDMYAKCGNIDSSMNVFRLMRKRNVVTWNALFSGLAM 329

Query: 218 NGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELD 277
           +G      ++F  M  + + PD +++ AVLSACSH G V++G+  FHS+   +G++P++D
Sbjct: 330 HGKGRMVIDMFPQM-IREVKPDDLTFTAVLSACSHSGIVDEGWRCFHSL-RFYGLEPKVD 387

Query: 278 HYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIES 337
           HYACMVDLLGRAGL+EEAE  +  MP+ P+ V+ G+LLG+C VH   E+ +RI   LI+ 
Sbjct: 388 HYACMVDLLGRAGLIEEAEILMREMPVPPNEVVLGSLLGSCSVHGKVEIAERIKRELIQM 447

Query: 338 DQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRS 397
              +    IL+SN+YV   + + A+ +R ++RKR I++ PG S I ++  VH F +GDRS
Sbjct: 448 SPGNTEYQILMSNMYVAEGRSDIADGLRGSLRKRGIRKIPGLSSIYVNDSVHRFSSGDRS 507

Query: 398 HEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEE--EEKETVIGYHSEKLALAFGLIC 455
           H +T+EIY    E++++I++ GY  +   ++   E   EEKE  +  HSEKLA+ FGL+ 
Sbjct: 508 HPRTKEIYLKLNEVIERIRSAGYVPDVSGLVSHSEGDLEEKEQALCCHSEKLAVCFGLLE 567

Query: 456 TKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           TKP + + + KN+RIC DCHSAMK+VSKV+ R+I IRDR  +H F+ GSCSC +YW
Sbjct: 568 TKPSTPLLVFKNLRICRDCHSAMKIVSKVYDREIIIRDRNRFHQFKGGSCSCSDYW 623



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/319 (21%), Positives = 118/319 (36%), Gaps = 68/319 (21%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N++   Y  +GE++   KLFD++P                             + ++  V
Sbjct: 47  NALFQFYASSGEMVTAQKLFDEIP-----------------------------LSEKDNV 77

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
            W  L+S F++ G    ++ LF EM+   +E +   +V L   CA+L  L +    +   
Sbjct: 78  DWTTLLSSFSRYGLLVNSMKLFVEMRRKRVEIDDVSVVCLFGVCAKLEDLGFAQQGHGVA 137

Query: 166 QKKCIKLDSILCAALIDMYAKCG-------------------------------SIDLAM 194
            K  +     +C AL+DMY KCG                                ++   
Sbjct: 138 VKMGVLTSVKVCNALMDMYGKCGLVSEVKRIFEELEEKSVVSWTVVLDTVVKWEGLERGR 197

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK-GISPDSISYIAVLSACSHL 253
           +VFH   +++  A+T  + G    G + E  EL   M  + G   + ++  ++LSAC+  
Sbjct: 198 EVFHEMPERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQS 257

Query: 254 G------WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPD 307
           G      WV         M        ++     +VD+  + G ++ + N    M  K +
Sbjct: 258 GNLVVGRWVHVYALKKEMMMGEEASYDDVMVGTALVDMYAKCGNIDSSMNVFRLM-RKRN 316

Query: 308 NVIWGTLLGACRVHRNAEM 326
            V W  L     +H    M
Sbjct: 317 VVTWNALFSGLAMHGKGRM 335



 Score = 46.6 bits (109), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 85/201 (42%), Gaps = 12/201 (5%)

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIK--LDSILCAALIDMYAKCGSIDLAMQVFH--SY 200
           LL  CA    L  G  +++ +    +K    S L  AL   YA  G +  A ++F     
Sbjct: 12  LLRHCAHRSFLRPGKELHAVLTTSGLKKAPRSYLSNALFQFYASSGEMVTAQKLFDEIPL 71

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSH---LGWVE 257
            +KD   +T+ +   +  G  + + +LF  M+ K +  D +S + +   C+    LG+ +
Sbjct: 72  SEKDNVDWTTLLSSFSRYGLLVNSMKLFVEMRRKRVEIDDVSVVCLFGVCAKLEDLGFAQ 131

Query: 258 KGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
           +G    H +    G+   +     ++D+ G+ GL+ E +     +  K   V W  +L  
Sbjct: 132 QG----HGVAVKMGVLTSVKVCNALMDMYGKCGLVSEVKRIFEELEEK-SVVSWTVVLDT 186

Query: 318 CRVHRNAEMGQRIGNMLIESD 338
                  E G+ + + + E +
Sbjct: 187 VVKWEGLERGREVFHEMPERN 207


>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 585

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 217/551 (39%), Positives = 315/551 (57%), Gaps = 40/551 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++ K+ F  ++FV  +L+  Y+ C  +  A  VFD+  + ++VSWNSMI G+  N     
Sbjct: 35  LIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDR 94

Query: 61  GLKLF-----DKMPQRNDVSWNSIL------GGL----------VRFGSV---------- 89
            + +F     +K    N+VS +S+L      GGL          V+FG V          
Sbjct: 95  AVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKFGLVPLTYVMNSLM 154

Query: 90  ---------DDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
                    D+  ++F  +  R +V+W VL+ GF QN + +EA   F  M+   + P+ A
Sbjct: 155 DMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEA 214

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
              ++L + A L AL  G  ++  I K     +  +  +LI MYAKCGS+  A QVF   
Sbjct: 215 SFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGI 274

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
            D +V ++T+ I    ++G + +  ELFE+M S+GI P  ++++ VLSACSH G VE+G 
Sbjct: 275 EDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGL 334

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
            +F+SM  +H + P  +HYACMVDLLGRAG L+EA+ FI SMPMKP   +WG LLGACR 
Sbjct: 335 AHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRK 394

Query: 321 HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS 380
           + N +MG+     L E +  + G Y+LL+N+   + + E A EVR+ M    +++ PGCS
Sbjct: 395 YGNLKMGREAAERLFEMEPYNPGNYVLLANMCTRSGRLEEANEVRRLMGVNGVRKEPGCS 454

Query: 381 LIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVI 440
            I++  +   F A DRSH  + EIY+  E++ K +K  GY  ET  V   +EE E+E  +
Sbjct: 455 WIDVKNMTFVFTAHDRSHSSSDEIYKMLEKLEKLVKKKGYVAETEFVTNHLEENEEEQGL 514

Query: 441 GYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF 500
            YHSEKLALAFGL+     S IRI KN+R C  CH+ MKL SK+F R+I +RD   +H F
Sbjct: 515 WYHSEKLALAFGLLTLPIDSPIRIKKNLRTCGHCHTVMKLASKIFDREIIVRDINRFHRF 574

Query: 501 EDGSCSCLEYW 511
            DG CSC +YW
Sbjct: 575 ADGFCSCGDYW 585



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 87/180 (48%), Gaps = 3/180 (1%)

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
           PN     S+LSA A    + +G  ++S I K     +  +  AL+DMYAKC  +  A++V
Sbjct: 8   PNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRV 67

Query: 197 FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFEN-MKSKGISPDSISYIAVLSACSHLGW 255
           F    ++++ ++ S I G   N     A  +F++ ++ K + P+ +S  +VLSAC+++G 
Sbjct: 68  FDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGG 127

Query: 256 VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
           +  G    H +    G+ P       ++D+  +    +E       +  + D V W  L+
Sbjct: 128 LNFG-RQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDR-DVVTWNVLV 185


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/541 (35%), Positives = 317/541 (58%), Gaps = 40/541 (7%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP- 69
           V +  +L+  Y+ C  +  A  VF      + V+W+++I G+V    + E   LF  M  
Sbjct: 239 VLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLV 298

Query: 70  ---------------------------------------QRNDVSWNSILGGLVRFGSVD 90
                                                    +  + NS+L    + G ++
Sbjct: 299 EGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLIN 358

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           +A  +F+++  +  +S+  L+SG+ QNG+ +EA  +F++MQ+ +++P+ A +VSL+ AC+
Sbjct: 359 EATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACS 418

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
            L AL +G   +  +  + + L++ +C +LIDMYAKCG IDL+ QVF     +D+ ++ +
Sbjct: 419 HLAALQHGRCSHGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNT 478

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I G  ++G   EA  LF +MK++G  PD +++I +++ACSH G V +G ++F +M   +
Sbjct: 479 MIAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKY 538

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
           GI P ++HY CMVDLL R G L+EA  FI SMP+K D  +WG LLGACR+H+N ++G+++
Sbjct: 539 GILPRMEHYICMVDLLARGGFLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQV 598

Query: 331 GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHE 390
             M+ +      G ++LLSNI+    + + A EVR   + +  K++PGCS IE++G +H 
Sbjct: 599 SRMIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGCSWIEINGSLHA 658

Query: 391 FLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALA 450
           F+ GD+SH  + +IY   + I+  IK  GY  +T  V+ D+EEEEKE  + YHSEKLA+A
Sbjct: 659 FVGGDQSHPCSPDIYHELDNILIDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIA 718

Query: 451 FGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEY 510
           FG++       I + KN+R+C DCH+A+K ++ V  R I +RD   +HHF++G CSC ++
Sbjct: 719 FGVLSLNEDKTIFVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDANRFHHFKNGQCSCGDF 778

Query: 511 W 511
           W
Sbjct: 779 W 779



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 99/356 (27%), Positives = 155/356 (43%), Gaps = 46/356 (12%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D+FV  +LI  Y  C R   A  VF +    DVV+WN+M+ GY  +G     +     M 
Sbjct: 133 DLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQ 192

Query: 70  QRNDVSWN-----SILGGLVRFGSVDD--------------------------------- 91
            R  +  N     S+L  L + G++                                   
Sbjct: 193 DRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKC 252

Query: 92  -----ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV-SL 145
                ACRVF+ M  R+ V+W  LI GF    R  EA  LF++M    +   SA  V S 
Sbjct: 253 KHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASA 312

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
           L  CA L  L  G  +++ + K  I  D     +L+ MYAK G I+ A  +F     KD 
Sbjct: 313 LRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDT 372

Query: 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHS 265
            +Y + + G   NG + EAF +F+ M++  + PD  + ++++ ACSHL  ++ G    H 
Sbjct: 373 ISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHG-RCSHG 431

Query: 266 MFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
              + G+  E      ++D+  + G ++ +      MP + D V W T++    +H
Sbjct: 432 SVIIRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPAR-DIVSWNTMIAGYGIH 486



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 149/335 (44%), Gaps = 46/335 (13%)

Query: 25  GRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM------PQRNDVSW-- 76
           G++  AR VFD     D  ++N++I  Y   G     + L+  M      P +    +  
Sbjct: 47  GQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVL 106

Query: 77  -------------------------------NSILGGLVRFGSVDDACRVFNQMPKRSLV 105
                                           +++   +R      A  VF +MP R +V
Sbjct: 107 KACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVV 166

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLD-LEPNSAILVSLLSACAQLGALDYGNWVYSY 164
           +W  +++G+A +G    A+A   +MQ    L PN++ LVSLL   AQ GAL  G  V++Y
Sbjct: 167 AWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAY 226

Query: 165 IQKKCIKLDS---ILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHS 221
             +  +  +    ++  AL+DMYAKC  +  A +VFH    ++   +++ I G  +    
Sbjct: 227 CLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRM 286

Query: 222 IEAFELFENMKSKGISPDSISYIA-VLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA 280
            EAF LF++M  +G+   S + +A  L  C+ L  +  G    H++    GI  +L    
Sbjct: 287 TEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMG-TQLHALLAKSGIHADLTAGN 345

Query: 281 CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
            ++ +  +AGL+ EA      + +K D + +G LL
Sbjct: 346 SLLSMYAKAGLINEATMLFDEIAIK-DTISYGALL 379



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 115/241 (47%), Gaps = 44/241 (18%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++ K+    D+   NSL+  Y+  G + +A  +FDE    D +S+ ++++GYV+NG+  E
Sbjct: 331 LLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEE 390

Query: 61  GLKLFDKMPQRN---DVSW------------------------------------NSILG 81
              +F KM   N   D++                                     NS++ 
Sbjct: 391 AFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSLID 450

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G +D + +VF++MP R +VSW  +I+G+  +G  KEA  LF  M++   EP+   
Sbjct: 451 MYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPDDVT 510

Query: 142 LVSLLSACAQLGALDYG-NWVYSYIQKKCI--KLDSILCAALIDMYAKCGSIDLAMQVFH 198
            + L++AC+  G +  G +W  +   K  I  +++  +C  ++D+ A+ G +D A Q   
Sbjct: 511 FICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYIC--MVDLLARGGFLDEAYQFIQ 568

Query: 199 S 199
           S
Sbjct: 569 S 569



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 85/175 (48%), Gaps = 12/175 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+    A +  + NSLI  Y+ CGR+  +R VFD+    D+VSWN+MI GY  +G   E 
Sbjct: 433 VIIRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEA 492

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLIS 112
             LF  M  +    +DV++  ++      G V +    F+ M  +      +  ++ ++ 
Sbjct: 493 TTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVD 552

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK 167
             A+ G   EA   ++ +QS+ L+ +  +  +LL AC     +D G  V   IQK
Sbjct: 553 LLARGGFLDEA---YQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRMIQK 604



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 89/190 (46%), Gaps = 1/190 (0%)

Query: 71  RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM 130
           +++  W   L   +  G +  A +VF+++P     ++  LI  ++  G    A+ L+R M
Sbjct: 31  KDNKEWQQELEQHIARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSM 90

Query: 131 QSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSI 190
               + PN      +L AC+ L  L  G  ++++     +  D  +  ALID+Y +C   
Sbjct: 91  LYFRVPPNKYTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARF 150

Query: 191 DLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK-GISPDSISYIAVLSA 249
             A  VF     +DV A+ + + G A +G    A     +M+ + G+ P++ + +++L  
Sbjct: 151 GPAANVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPL 210

Query: 250 CSHLGWVEKG 259
            +  G + +G
Sbjct: 211 LAQHGALFQG 220



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 57/134 (42%), Gaps = 2/134 (1%)

Query: 188 GSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVL 247
           G + LA QVF      D  AY + I   +  G    A +L+ +M    + P+  ++  VL
Sbjct: 47  GQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVL 106

Query: 248 SACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPD 307
            ACS L  +  G    H+     G+  +L     ++DL  R      A N  A MPM+ D
Sbjct: 107 KACSALADLCAG-RTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMR-D 164

Query: 308 NVIWGTLLGACRVH 321
            V W  +L     H
Sbjct: 165 VVAWNAMLAGYANH 178


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/544 (36%), Positives = 306/544 (56%), Gaps = 40/544 (7%)

Query: 3    VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
            VK  F+ +V   N+L+  YS CG +  A  VF +  D  +VSW S I  YVR G   + +
Sbjct: 598  VKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAI 657

Query: 63   KLFDKMPQR---------------------------------------NDVSWNSILGGL 83
             LFD+M  +                                       N    N+++   
Sbjct: 658  GLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMY 717

Query: 84   VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
             + GSV++A  VF+++P + +VSW  +I G++QN  P EAL LF +MQ    +P+   + 
Sbjct: 718  AKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQK-QFKPDDITMA 776

Query: 144  SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
             +L ACA L ALD G  ++ +I ++    D  +  AL+DMYAKCG + LA  +F     K
Sbjct: 777  CVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKK 836

Query: 204  DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
            D+ ++T  I G  M+G   EA   F  M+  GI PD  S+  +L+ACSH G + +G+ +F
Sbjct: 837  DLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFF 896

Query: 264  HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
            +SM +  G++P+L+HYAC+VDLL R G L +A  FI SMP+KPD  IWG LL  CR+H +
Sbjct: 897  NSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHD 956

Query: 324  AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE 383
             ++ +++   + E + ++   Y++L+N+Y E  K E  +++RK M+KR  K+ PGCS IE
Sbjct: 957  VKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIE 1016

Query: 384  LDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYH 443
            + G  + F+AG+  H + + I     ++  +++N  Y    R V+ + ++ EKE +   H
Sbjct: 1017 VGGKFNIFVAGNSKHPQAKRIDVLLRKLTMQMQNEDYFSMFRYVLINEDDMEKEMIQCGH 1076

Query: 444  SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
            SEK A+AFG++   PG  +R+ KN R+C DCH   K +SK  KR+I +RD   +HHF+DG
Sbjct: 1077 SEKSAMAFGILNLPPGRTVRVSKNQRVCGDCHEMGKFMSKTTKREIVLRDSNRFHHFKDG 1136

Query: 504  SCSC 507
             CSC
Sbjct: 1137 LCSC 1140



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 94/356 (26%), Positives = 166/356 (46%), Gaps = 41/356 (11%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +++ N  + D  +   L+  Y  CG +   R +FD+  +  V  WN +++ Y + G   E
Sbjct: 394 VIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRE 453

Query: 61  GLKLFDKMPQ---------------------------------------RNDVSWNSILG 81
            + LF KM +                                        N    NS++ 
Sbjct: 454 SVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIA 513

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              +FG V+ A  +F+++ +  +VSW  +I+G   NG     L +F +M  L +E +   
Sbjct: 514 AYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTT 573

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           LVS+L A A +G L  G  ++ +  K C   + +    L+DMY+KCG+++ A +VF   G
Sbjct: 574 LVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMG 633

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
           D  + ++TS I      G   +A  LF+ M+SKG+ PD  +  +++ AC+    ++KG  
Sbjct: 634 DTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKG-R 692

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
             HS    +G+   L     ++++  + G +EEA    + +P+K D V W T++G 
Sbjct: 693 DVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVK-DIVSWNTMIGG 747



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 145/297 (48%), Gaps = 62/297 (20%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+KN    ++ V N+LI  Y+ CG V +AR VF +    D+VSWN+MI GY +N    E 
Sbjct: 698 VIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEA 757

Query: 62  LKLFDKMPQR---NDVSWNSIL----------------GGLVRFGSVDD---ACR----- 94
           L+LF  M ++   +D++   +L                G ++R G   D   AC      
Sbjct: 758 LELFLDMQKQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMY 817

Query: 95  -----------VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
                      +F+ +PK+ L+SW V+I+G+  +G   EA++ F EM+   +EP+ +   
Sbjct: 818 AKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFS 877

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKC---IKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
            +L+AC+  G L+ G   ++ ++ +C    KL+   C  ++D+ A+ G++  A +   S 
Sbjct: 878 VILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYAC--VVDLLARMGNLSKAYKFIESM 935

Query: 201 GDKDVSAYTSAIFGLAMNG----HSIEAFE-----LFENMKSKGISPDSISYIAVLS 248
             K      + I+G+ ++G    H ++  E     +FE      + PD+  Y  VL+
Sbjct: 936 PIKP----DTTIWGVLLSGCRIHHDVKLAEKVAEHIFE------LEPDNTRYYVVLA 982



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 123/253 (48%), Gaps = 8/253 (3%)

Query: 14  KNSLIQFYSVCGRVRDARWVFDESD--DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQR 71
           +N+ I  +   G +R+A  +  +S   +L + S+ S++        + +G ++   +   
Sbjct: 339 QNAKINKFCEMGDLRNAIELLTKSKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIIS- 397

Query: 72  NDVSWNSILGGLVRF-----GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALAL 126
           N +S +  LG  + F     G +    ++F+++    +  W +L+S +A+ G  +E+++L
Sbjct: 398 NGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSL 457

Query: 127 FREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAK 186
           F++MQ L +  N      +L   A LG +     V+ Y+ K     ++ +  +LI  Y K
Sbjct: 458 FKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFK 517

Query: 187 CGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAV 246
            G ++ A  +F    + DV ++ S I G  +NG S    E+F  M   G+  D  + ++V
Sbjct: 518 FGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSV 577

Query: 247 LSACSHLGWVEKG 259
           L A +++G +  G
Sbjct: 578 LVAWANIGNLSLG 590


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/520 (38%), Positives = 304/520 (58%), Gaps = 46/520 (8%)

Query: 31  RWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRN------------------ 72
           R +F+   + D+VSWN++I G  RNG   E L++  +M   N                  
Sbjct: 193 RKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAEN 252

Query: 73  -DVS-WNSILGGLVRFG-------------------SVDDACRVFNQMPKRSLVSWVVLI 111
            D+S    I G  +R G                    V D+CRVF  + +R  +SW  +I
Sbjct: 253 VDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSII 312

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK 171
           +G  QNG   E L  FR+M    ++P S    S++ ACA L  L  G  ++ YI +    
Sbjct: 313 AGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFD 372

Query: 172 LDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM 231
            +  + ++L+DMYAKCG+I  A Q+F     +D+ ++T+ I G A++G + +A ELFE M
Sbjct: 373 ENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQM 432

Query: 232 KSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGL 291
           +++GI        AVL+ACSH G V++ + YF+SM    GI P ++HYA + DLLGRAG 
Sbjct: 433 ETEGIK-------AVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGR 485

Query: 292 LEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNI 351
           LEEA +FI  M + P   IW TLL ACRVH+N +M +++ N ++E D N+ G YILL+NI
Sbjct: 486 LEEAYDFICGMHIGPTGSIWATLLSACRVHKNIDMAEKVANRILEVDPNNTGAYILLANI 545

Query: 352 YVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEI 411
           Y    + + A + R +MR+  I++ P CS IE+   V+ F+AGD SH   ++I +  E +
Sbjct: 546 YSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGDESHPCYEKIREAMEVL 605

Query: 412 VKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRIC 471
           V+ ++  GY  +T  V  D+EEE+K+ ++  HSE+LA+ FG+I T  G  IR+ KN+R+C
Sbjct: 606 VELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTPAGMTIRVTKNLRVC 665

Query: 472 SDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           +DCH+A K +SK+  R+I +RD   +HHF++G+CSC +YW
Sbjct: 666 TDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 705



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 143/294 (48%), Gaps = 17/294 (5%)

Query: 39  DLDVVSWNSMINGYVR-------NGEILEGLKLFDKMPQRN-DVSWNSILGGLVRFGSVD 90
           D D+ + N+++N Y +         + L   ++FD+M +R   V   S+L       S D
Sbjct: 138 DFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVL-------SED 190

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
              ++F  MP++ LVSW  +I+G A+NG  +E L + REM   +L+P+S  L S+L   A
Sbjct: 191 SVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIA 250

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
           +   +  G  ++    ++ +  D  + ++LIDMYAKC  +  + +VF    ++D  ++ S
Sbjct: 251 ENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNS 310

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I G   NG   E    F  M    I P S S+ +++ AC+HL  +  G    H     +
Sbjct: 311 IIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLG-KQLHGYITRN 369

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
           G    +   + +VD+  + G +  A+     M ++ D V W  ++  C +H  A
Sbjct: 370 GFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLR-DMVSWTAMIMGCALHGQA 422



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 94/199 (47%), Gaps = 47/199 (23%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           ++     D++V +SLI  Y+ C RV D+  VF    + D +SWNS+I G V+NG   EGL
Sbjct: 266 IRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGL 325

Query: 63  KLFDKM------PQ----------------------------RNDVSWN-----SILGGL 83
           + F +M      P+                            RN    N     S++   
Sbjct: 326 RFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMY 385

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
            + G++  A ++F++M  R +VSW  +I G A +G+  +A+ LF +M++  ++       
Sbjct: 386 AKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIK------- 438

Query: 144 SLLSACAQLGALDYGNWVY 162
           ++L+AC+  G +D   W Y
Sbjct: 439 AVLTACSHGGLVDEA-WKY 456



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 77/153 (50%), Gaps = 11/153 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           + +N F  ++F+ +SL+  Y+ CG +R A+ +FD     D+VSW +MI G   +G+  + 
Sbjct: 366 ITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDA 425

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLISGFAQ 116
           ++LF++M         ++L      G VD+A + FN M +   ++     +  +     +
Sbjct: 426 IELFEQMETEG---IKAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGR 482

Query: 117 NGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
            GR +EA      M    + P  +I  +LLSAC
Sbjct: 483 AGRLEEAYDFICGMH---IGPTGSIWATLLSAC 512



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/260 (20%), Positives = 109/260 (41%), Gaps = 34/260 (13%)

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           D+ R+FN +     ++W  +I  +  +G P ++L  F  M +  L P+  +  S+L +CA
Sbjct: 58  DSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCA 117

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAK-------------CGSI------- 190
            L  L+ G  ++ YI +  +  D     AL++MY+K              G +       
Sbjct: 118 LLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTER 177

Query: 191 ------------DLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISP 238
                       D   ++F    +KD+ ++ + I G A NG   E   +   M    + P
Sbjct: 178 TRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKP 237

Query: 239 DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENF 298
           DS +  +VL   +    + +G    H      G+  ++   + ++D+  +   + ++   
Sbjct: 238 DSFTLSSVLPLIAENVDISRG-KEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCR- 295

Query: 299 IASMPMKPDNVIWGTLLGAC 318
           + ++  + D + W +++  C
Sbjct: 296 VFTLLTERDGISWNSIIAGC 315


>gi|225464414|ref|XP_002269452.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Vitis vinifera]
          Length = 594

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 213/549 (38%), Positives = 310/549 (56%), Gaps = 39/549 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++     D    N L+  YS CG V  AR +FDE     +VSWN+M+  + +NG+  + 
Sbjct: 46  IIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDCEKA 105

Query: 62  LKLFDKMPQR---------------------------------------NDVSWNSILGG 82
           L LF +M +                                        N     ++L  
Sbjct: 106 LVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDV 165

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G V DA  VF  MP+RS V+W  +++G+ QN   +EAL LF   Q++ LE N   +
Sbjct: 166 YAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTI 225

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S LSACA   AL  G  V +   K  I  +  + ++LIDMYAKCG I+ A  VF S  +
Sbjct: 226 SSALSACAARAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVEE 285

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           K+V  + + + G + +  S+EA   FE M+  GI P+ I+YI+VLSACSHLG VEKG  Y
Sbjct: 286 KNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSACSHLGLVEKGRKY 345

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F  M  VH + P + HY+CMVD+LGRAGLL EA++FI  MP      +WG+LL +CR++R
Sbjct: 346 FDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATASMWGSLLASCRIYR 405

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           N E+ +     L E + ++ G ++LLSNIY    + E     R  +++ K K+  G S I
Sbjct: 406 NLELAEVAAKHLFEIEPHNAGNHVLLSNIYAANDRWEEVARARNLLKESKAKKERGKSWI 465

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E+   VH F+ G+R+H +  EIY   E++V ++K  GY  +T   + D+EE  K+ ++ +
Sbjct: 466 EIKHKVHSFMVGERNHPRIVEIYLKLEDLVGEMKKIGYKAKTEHDLHDVEESRKQELLRH 525

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSEKLAL FG++    G+ IRI+KN+RIC DCHS MKL S + +R+I +RD   +HHF++
Sbjct: 526 HSEKLALTFGIMVLPHGAPIRIMKNLRICGDCHSFMKLASSITEREIIVRDTNRFHHFKN 585

Query: 503 GSCSCLEYW 511
           G CSC E+W
Sbjct: 586 GYCSCGEFW 594



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 135/278 (48%), Gaps = 6/278 (2%)

Query: 48  MINGYVRNGEILEGLKLFDKMPQ---RND-VSWNSILGGLVRFGSVDDACRVFNQMPKRS 103
           ++    RN   +EG+    ++ +   R D ++ N ++    + G V+ A ++F++MP RS
Sbjct: 26  LLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRS 85

Query: 104 LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYS 163
           LVSW  ++    QNG  ++AL LF +MQ      +   + S++ ACA    +     ++ 
Sbjct: 86  LVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHG 145

Query: 164 YIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIE 223
           +  K  +  +  +  AL+D+YAKCG +  A  VF    ++    ++S + G   N    E
Sbjct: 146 FALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEE 205

Query: 224 AFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMV 283
           A  LF   ++ G+  +  +  + LSAC+    + +G     ++    GI   +   + ++
Sbjct: 206 ALVLFHRAQAMGLEHNQFTISSALSACAARAALIEG-KQVQAVSCKTGIGSNIFVISSLI 264

Query: 284 DLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           D+  + G++EEA    +S+  K + V+W  +L     H
Sbjct: 265 DMYAKCGIIEEAYTVFSSVEEK-NVVLWNAILSGFSRH 301



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 82/180 (45%), Gaps = 10/180 (5%)

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           L  LL + A+  A   G   ++ I +  ++ D+I    L++MY+KCG ++ A ++F    
Sbjct: 23  LQHLLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMP 82

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
            + + ++ + +     NG   +A  LF  M+ +G S    +  +V+ AC+      K   
Sbjct: 83  VRSLVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACA-----AKCCV 137

Query: 262 YFHSMFDVHGIKPELDHY----ACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
           +         +K  LD        ++D+  + GL+++A      MP + D V W +++  
Sbjct: 138 FECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSD-VTWSSMVAG 196


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 210/580 (36%), Positives = 316/580 (54%), Gaps = 70/580 (12%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VVK  F   VFV + L+  YS  G +  AR VFDE  + +VV +N++I G +R G + + 
Sbjct: 169 VVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDS 228

Query: 62  LKLFDKMPQRNDVSWNSIL-----GGLVR--------------------FGSVDDAC--- 93
            +LF +M +R+ +SW S++      GL R                    FGSV  AC   
Sbjct: 229 KRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGV 288

Query: 94  ------------------------------------------RVFNQMPKRSLVSWVVLI 111
                                                      VF +M  +++VSW  ++
Sbjct: 289 MALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAML 348

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK 171
            G+ QNG  +EA+  F +MQ   +EP+   L S++S+CA L +L+ G   ++      + 
Sbjct: 349 VGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLI 408

Query: 172 LDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM 231
               +  AL+ +Y KCGSI+ + ++F+    KD   +T+ + G A  G + E   LFE+M
Sbjct: 409 SFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESM 468

Query: 232 KSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGL 291
            + G+ PD +++I VLSACS  G VEKG   F SM + HGI P  DHY CM+DL  RAG 
Sbjct: 469 LAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYTCMIDLFSRAGR 528

Query: 292 LEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNI 351
           +EEA NFI  MP  PD + W TLL +CR + N ++G+     L+E D ++   Y+LLS++
Sbjct: 529 IEEARNFINKMPFSPDAISWATLLSSCRFYGNMDIGKWAAEFLMELDPHNTASYVLLSSV 588

Query: 352 YVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEI 411
           Y    K E    +RK MR + +++ PGCS I+    VH F A D+S+  + +IY   E++
Sbjct: 589 YAAKGKWEEVARLRKDMRDKGLRKEPGCSWIKYKNQVHVFSADDKSNPFSDQIYSELEKL 648

Query: 412 VKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRIC 471
             K+   GY  +  SV+ D+ + EK  ++ +HSEKLA+AFGL+   PG  IR+VKN+R+C
Sbjct: 649 NYKMIKEGYVPDMNSVLHDVGDSEKIKMLNHHSEKLAIAFGLLFIPPGLPIRVVKNLRVC 708

Query: 472 SDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           SDCH+A K +SK+  R+I +RD   +H F+DG+CSC ++W
Sbjct: 709 SDCHNATKYISKITNREILVRDTARFHLFKDGTCSCGDFW 748



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 152/320 (47%), Gaps = 12/320 (3%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K     + F+ N+LI  Y+  G +  A  VFD+    ++ SWN++++ Y + G + E 
Sbjct: 35  IIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPNLYSWNTILSAYSKLGRVSEM 94

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKR------SLVSWVVLISGFA 115
             LFD MP+R+ VSWNS++ G    G +  + + +N M K       + +++  L+   +
Sbjct: 95  EYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGSFNLNRITFSTLLILAS 154

Query: 116 QNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI 175
           + G  K    +   +          +   L+   +++G +     V+  + +K + + + 
Sbjct: 155 KRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNT 214

Query: 176 LCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG 235
           L   L+    +CG ++ + ++F    ++D  ++TS I G   NG   +A ++F  MK + 
Sbjct: 215 LIMGLM----RCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLEN 270

Query: 236 ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA 295
           +  D  ++ +VL+AC  +  +++G    H+       K  +   + +VD+  +   ++ A
Sbjct: 271 LQMDQYTFGSVLTACGGVMALQEG-KQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSA 329

Query: 296 ENFIASMPMKPDNVIWGTLL 315
           E     M  K + V W  +L
Sbjct: 330 EAVFKKMTCK-NVVSWTAML 348


>gi|359495864|ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Vitis vinifera]
          Length = 751

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/542 (38%), Positives = 316/542 (58%), Gaps = 41/542 (7%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           +VFV ++L+  Y+  G++RDAR V D+    DVV + ++I GY  +GE  E L++F  M 
Sbjct: 211 NVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMT 270

Query: 70  QRN-------------------DVSWNSILGGLV--------------------RFGSVD 90
           ++                    D++   ++ GL+                    R G VD
Sbjct: 271 KKGIEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAGLESAVASQTSLLTMYYRCGLVD 330

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           D+ +VF Q    + V+W  +I G  QNGR + AL  FR+M    + PNS  L S+L AC+
Sbjct: 331 DSLKVFKQFINPNQVTWTSVIVGLVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACS 390

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
            L  L+ G  +++ + K  + +D  + AALID Y KCGS ++A  VF+   + DV +  S
Sbjct: 391 SLAMLEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNS 450

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I+  A NG   EA +LF  MK  G+ P++++++ VLSAC++ G +E+G + F S  +  
Sbjct: 451 MIYSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAGLLEEGCHIFSSARNSG 510

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
            I+   DHYACMVDLLGRAG L+EAE  I  + +  D VIW TLL ACR+H + EM +R+
Sbjct: 511 NIELTKDHYACMVDLLGRAGRLKEAEMLINQVNI-SDVVIWRTLLSACRIHGDVEMAKRV 569

Query: 331 GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHE 390
            N +I+      G ++LLSN+Y  T       E++  MR+ ++K+ P  S ++++  +H 
Sbjct: 570 MNRVIDLAPEDGGTHVLLSNLYASTGNWSKVIEMKSAMREMRLKKNPAMSWVDVEREIHT 629

Query: 391 FLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALA 450
           F+AGD SH   ++I +  EE+++K+K  GY  +TR V+ D++EE+K   + YHSEKLA+A
Sbjct: 630 FMAGDWSHPNFRDIREKLEELIEKVKELGYVPDTRFVLQDLDEEKKIRSLYYHSEKLAVA 689

Query: 451 FGLICTK-PGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLE 509
           F L  +    + IRI+KN+R+C DCH+ MK VSK+  R I  RD K +HHF +G CSC +
Sbjct: 690 FALWRSNYKNTTIRILKNLRVCGDCHTWMKFVSKIVGRDIIARDVKRFHHFRNGLCSCGD 749

Query: 510 YW 511
           YW
Sbjct: 750 YW 751



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 107/380 (28%), Positives = 168/380 (44%), Gaps = 79/380 (20%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM-PQ--- 70
           N LI  Y  CG V  AR VFDE     +V+WNSMI  Y+RNG   E + ++ +M P    
Sbjct: 114 NKLIDAYLKCGSVVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGIL 173

Query: 71  RNDVSWNSILG-----GLV-------------------------------RFGSVDDACR 94
            ++ +++S+       GLV                               +FG + DA  
Sbjct: 174 PDEFTFSSVFKAFSDLGLVHEGQRAHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARL 233

Query: 95  VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA 154
           V +Q+  + +V +  LI G++ +G   E+L +FR M    +E N   L S+L  C  L  
Sbjct: 234 VSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKKGIEANEYTLSSVLVCCGNLED 293

Query: 155 LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFG 214
           L  G  ++  I K  ++       +L+ MY +CG +D +++VF  + + +   +TS I G
Sbjct: 294 LTSGRLIHGLIVKAGLESAVASQTSLLTMYYRCGLVDDSLKVFKQFINPNQVTWTSVIVG 353

Query: 215 LAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP 274
           L  NG    A   F  M    I+P+S +  +VL ACS L  +E+G    H++    G+  
Sbjct: 354 LVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSLAMLEQG-KQIHAIVMKFGL-- 410

Query: 275 ELDHY--ACMVDLLGRA-----------GLLE--------------------EAENFIAS 301
           ++D Y  A ++D  G+            GLLE                    EA    + 
Sbjct: 411 DIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMIYSYAQNGFGHEALQLFSG 470

Query: 302 MP---MKPDNVIWGTLLGAC 318
           M    ++P+NV W  +L AC
Sbjct: 471 MKDTGLEPNNVTWLGVLSAC 490



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 112/259 (43%), Gaps = 40/259 (15%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++VK      V  + SL+  Y  CG V D+  VF +  + + V+W S+I G V+NG    
Sbjct: 303 LIVKAGLESAVASQTSLLTMYYRCGLVDDSLKVFKQFINPNQVTWTSVIVGLVQNGREEI 362

Query: 61  GLKLFDKMPQR----NDVSWNSIL-------------------------------GGLVR 85
            L  F +M +     N  + +S+L                                 L+ 
Sbjct: 363 ALLKFRQMLRSSITPNSFTLSSVLRACSSLAMLEQGKQIHAIVMKFGLDIDKYVGAALID 422

Query: 86  F----GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
           F    GS + A  VFN + +  +VS   +I  +AQNG   EAL LF  M+   LEPN+  
Sbjct: 423 FYGKCGSTEIARSVFNGLLEVDVVSVNSMIYSYAQNGFGHEALQLFSGMKDTGLEPNNVT 482

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKC-IKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
            + +LSAC   G L+ G  ++S  +    I+L     A ++D+  + G +  A  + +  
Sbjct: 483 WLGVLSACNNAGLLEEGCHIFSSARNSGNIELTKDHYACMVDLLGRAGRLKEAEMLINQV 542

Query: 201 GDKDVSAYTSAIFGLAMNG 219
              DV  + + +    ++G
Sbjct: 543 NISDVVIWRTLLSACRIHG 561



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 83/174 (47%), Gaps = 13/174 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V+K     D +V  +LI FY  CG    AR VF+   ++DVVS NSMI  Y +NG   E
Sbjct: 404 IVMKFGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMIYSYAQNGFGHE 463

Query: 61  GLKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLI 111
            L+LF  M     + N+V+W  +L      G +++ C +F+       +      +  ++
Sbjct: 464 ALQLFSGMKDTGLEPNNVTWLGVLSACNNAGLLEEGCHIFSSARNSGNIELTKDHYACMV 523

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
               + GR KEA  L  ++   D+     I  +LLSAC   G ++    V + +
Sbjct: 524 DLLGRAGRLKEAEMLINQVNISDV----VIWRTLLSACRIHGDVEMAKRVMNRV 573



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 69/149 (46%), Gaps = 8/149 (5%)

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCI 170
           +S F+Q+      L +   +QS  L        SL+  C  + ++     + S+  K+  
Sbjct: 55  LSHFSQSNIKIRKLCITETIQSTKLYS------SLIQQCIGIKSITDITKIQSHALKR-- 106

Query: 171 KLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFEN 230
                L   LID Y KCGS+  A +VF     + + A+ S I     NG S EA ++++ 
Sbjct: 107 GFHHSLGNKLIDAYLKCGSVVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQR 166

Query: 231 MKSKGISPDSISYIAVLSACSHLGWVEKG 259
           M   GI PD  ++ +V  A S LG V +G
Sbjct: 167 MVPDGILPDEFTFSSVFKAFSDLGLVHEG 195


>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Vitis vinifera]
          Length = 610

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/517 (37%), Positives = 304/517 (58%), Gaps = 7/517 (1%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRD-----ARWVFDESDDLDVVSWNSMINGYVRN 55
           M  ++    D +V   L++  ++ G ++      A ++     D DVV  +S+++ Y + 
Sbjct: 95  MFKQDGLQPDHYVFACLVKACAILGAMKQGKQVHATFIVSPVSDDDVVK-SSLVDMYAKC 153

Query: 56  GEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFA 115
           G    G  +FD +  +N +SW +++ G  + G   DA ++F +MP ++L+SW  LISG  
Sbjct: 154 GLPDIGRVVFDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKMPVKNLLSWTALISGLV 213

Query: 116 QNGRPKEALALFREMQSLDLE-PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDS 174
           Q+G   ++  LF EM+S  ++  +  IL S++ A A L  L  G  ++  +     +   
Sbjct: 214 QSGNWVDSFYLFMEMRSKGIDIVDPFILSSIIGASANLAVLGLGKQIHCLVILLGYESSL 273

Query: 175 ILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK 234
            +  AL+DMYAKC  +  A ++F     +D+ ++TS I G A +G + EA  L+  M S 
Sbjct: 274 FVSNALVDMYAKCSDVLAAKKIFGRMVQRDIVSWTSIIVGTAQHGLAEEALSLYNRMLST 333

Query: 235 GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEE 294
           G+ P+ ++++ ++ ACSH+G V KG Y+F+SM   +GI P L HY C++DLL R+G LEE
Sbjct: 334 GLKPNEVTFVGLIYACSHVGLVSKGRYFFNSMIKDYGINPSLQHYTCLLDLLSRSGHLEE 393

Query: 295 AENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVE 354
           AEN I +MP KPD   W  LL AC  HRN  +G R+ + L+         YILLSNIY  
Sbjct: 394 AENLIKAMPFKPDEATWAALLSACNHHRNTLIGIRVADHLLSLKPEDPSTYILLSNIYAS 453

Query: 355 TLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKK 414
               E+  +VR+ M   ++K+ PG S I L      FLAG+ SH   +EI+   EE+  +
Sbjct: 454 AAMWESVSKVRRLMAAMEVKKEPGYSCIVLGKESQVFLAGETSHPAKEEIFGLLEELDAE 513

Query: 415 IKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDC 474
           +K  GY  +T SV+ D+E++EKE  + +HSE+LA+A+GL+   PG V+ IVKN+R+C DC
Sbjct: 514 MKKRGYIPDTSSVLHDLEQQEKERQLFWHSERLAVAYGLLKGIPGMVLHIVKNLRVCGDC 573

Query: 475 HSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           H+ +K +S + KR+I +RD   YHHF+DG CSC  +W
Sbjct: 574 HTVLKFISIIVKREIVVRDANRYHHFKDGKCSCNNFW 610



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 104/192 (54%), Gaps = 7/192 (3%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD-L 135
           N+++    + G + DA  +FNQ+P R  +SW  +++   Q   P   L++F  M   D L
Sbjct: 42  NNLINMYGKCGLIQDALNLFNQLPHRDPISWASILTANNQANLPHLTLSMFPAMFKQDGL 101

Query: 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ 195
           +P+  +   L+ ACA LGA+  G  V++      +  D ++ ++L+DMYAKCG  D+   
Sbjct: 102 QPDHYVFACLVKACAILGAMKQGKQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRV 161

Query: 196 VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG- 254
           VF S   K+  ++T+ I G A +G  ++A +LF+ M  K +    +S+ A++S     G 
Sbjct: 162 VFDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKMPVKNL----LSWTALISGLVQSGN 217

Query: 255 WVEKGFYYFHSM 266
           WV+  FY F  M
Sbjct: 218 WVD-SFYLFMEM 228



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 80/175 (45%), Gaps = 3/175 (1%)

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           LV  L ACA+  +   G  ++ +I K  I     L   LI+MY KCG I  A+ +F+   
Sbjct: 6   LVYQLQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLP 65

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENM-KSKGISPDSISYIAVLSACSHLGWVEKGF 260
            +D  ++ S +              +F  M K  G+ PD   +  ++ AC+ LG +++G 
Sbjct: 66  HRDPISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQG- 124

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
              H+ F V  +  +    + +VD+  + GL +       S+  K +++ W  ++
Sbjct: 125 KQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSK-NSISWTAMI 178


>gi|225450761|ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 584

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 186/433 (42%), Positives = 279/433 (64%), Gaps = 1/433 (0%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +VK  F YDVF +N+LI  Y  CG + DA  +FDE  + +VV+WN+MI G    G+    
Sbjct: 152 LVKVGFCYDVFTRNALIHMYLKCGSITDAHLLFDEMPNHNVVTWNTMITGCFGCGDTERA 211

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
            +LF +MP+RN  SWN+++GG  + G VD A  +F+ MP+R +VSW  +IS + QNGR  
Sbjct: 212 RRLFGEMPERNVGSWNAVVGGYSKLGHVDIARSLFDLMPERDVVSWGSMISAYVQNGRAA 271

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
           EAL LF+EM    +  +S I+ S+LSACAQ+GALD G W+++Y+++  ++ D  L  AL+
Sbjct: 272 EALELFKEMMLAGVSADSIIITSILSACAQIGALDMGRWIHAYMKRSKLRNDVFLDTALV 331

Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
           DMYAKCG ID A  VF++   K++ ++ + + GLA++GH   A ELF+ M+S G+ P+ I
Sbjct: 332 DMYAKCGCIDTAFGVFNTMPRKNLCSWNAMLSGLAIHGHGFAALELFKQMESTGVGPNDI 391

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
           +++AVLSACSH+G VE+G+  F+ M     I P+++HY CMVD+L R GL+ EA+  I +
Sbjct: 392 TFVAVLSACSHIGSVEEGWKKFNQMDKEFNITPKVEHYGCMVDILCRQGLINEAKEMIRT 451

Query: 302 MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361
           MP++P+ VIWG LL AC+VH    +G+ +   + +      G Y+LLSNI+    +    
Sbjct: 452 MPLEPNVVIWGALLNACKVHGYTNVGEDVVGYIQKLVSEDGGCYVLLSNIFAAKSQWNEV 511

Query: 362 EEVRKTMRKRKI-KRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGY 420
           E+ RK M++  + K+ PG S IELD VVH+F A DR H K +E+    E +   ++  GY
Sbjct: 512 EKTRKMMKQMGVEKKIPGYSSIELDSVVHDFFAEDRLHSKWREVSTVIERLNTHLEVKGY 571

Query: 421 NVETRSVMFDIEE 433
                 V+++I+E
Sbjct: 572 EANPSLVLYNIDE 584



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 109/260 (41%), Gaps = 16/260 (6%)

Query: 88  SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLS 147
           ++D A  VF  +      SW  +I GF +   P++AL  +  M+   +E N    + +L 
Sbjct: 75  NIDYAFWVFVGINYPDSYSWTTMIRGFVEAKNPEKALEFYGLMRQRGVELNKFTFLFVLK 134

Query: 148 ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSA 207
           A     +   G  V+  + K     D     ALI MY KCGSI  A  +F    + +V  
Sbjct: 135 AYGLRPSYQEGRIVHGKLVKVGFCYDVFTRNALIHMYLKCGSITDAHLLFDEMPNHNVVT 194

Query: 208 YTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMF 267
           + + I G    G +  A  LF  M  + +     S+ AV+   S LG V+       S+F
Sbjct: 195 WNTMITGCFGCGDTERARRLFGEMPERNVG----SWNAVVGGYSKLGHVDIA----RSLF 246

Query: 268 DVHGIKPELD--HYACMVDLLGRAGLLEEAENFIASMPM---KPDNVIWGTLLGACRVHR 322
           D   + PE D   +  M+    + G   EA      M +     D++I  ++L AC    
Sbjct: 247 D---LMPERDVVSWGSMISAYVQNGRAAEALELFKEMMLAGVSADSIIITSILSACAQIG 303

Query: 323 NAEMGQRIGNMLIESDQNHD 342
             +MG+ I   +  S   +D
Sbjct: 304 ALDMGRWIHAYMKRSKLRND 323


>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
          Length = 787

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/541 (38%), Positives = 307/541 (56%), Gaps = 40/541 (7%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DVFV +SL+  Y+  G + DA  VF      D V+W++M+ G+V  G+ L+ ++++ +M 
Sbjct: 142 DVFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMR 201

Query: 70  Q--------------------RNDVSWNSILGGLVRFGS-------------------VD 90
           +                    RN     S+ G L+R G                    +D
Sbjct: 202 EDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLD 261

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
            ACRVF  M  R+ VSW  +ISGFAQNG+  EAL LFR MQ+  ++P+S  LVS L AC+
Sbjct: 262 VACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACS 321

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
            +G L  G  V+ +I ++    + IL  A IDMY+KCGS+  A  +F+   D+D+  + +
Sbjct: 322 NIGFLKLGRSVHGFIVRR-FDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNA 380

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I     +G   +A  LF+ M   G+ PD  ++ ++LSA SH G VE+G  +F  M +  
Sbjct: 381 MIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHF 440

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
            I P   HY C+VDLL R+GL+EEA + + SM  +P   IW  LL  C  ++  E+G+ I
Sbjct: 441 KITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESI 500

Query: 331 GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHE 390
            + ++E   +  G   L+SN+Y  T K +   +VRK M+    K+ PGCS IE+ G  H 
Sbjct: 501 ADNILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHV 560

Query: 391 FLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALA 450
           F+  D+SH + +EI     ++  +++  GY   T  V  D+EEE KE  + YHSE+LA+A
Sbjct: 561 FVMEDQSHPQREEIVSKVAKLDLEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSERLAIA 620

Query: 451 FGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEY 510
           FGL+ T PG+ + I+KN+R+C DCH A+K +SK+  R+I +RD K +HHF+DG CSC +Y
Sbjct: 621 FGLLNTGPGTRLVIIKNLRVCGDCHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDY 680

Query: 511 W 511
           W
Sbjct: 681 W 681



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 151/276 (54%), Gaps = 14/276 (5%)

Query: 51  GYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVL 110
           G +R GE +   + FD   + +    +S+L    R+G++ DA +VF +MP+R  V+W  +
Sbjct: 122 GDLRGGESVRD-RAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTM 180

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCI 170
           ++GF   G+P +A+ ++R M+   ++ +  +++ ++ AC     +  G  V+ ++ +  +
Sbjct: 181 VAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGM 240

Query: 171 KLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFEN 230
           ++D +   +L+DMYAK G +D+A +VF     ++  ++++ I G A NG S EA  LF N
Sbjct: 241 RMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRN 300

Query: 231 MKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACM-----VDL 285
           M++ GI PDS + ++ L ACS++G+++ G         VHG       + C+     +D+
Sbjct: 301 MQASGIQPDSGALVSALLACSNIGFLKLG-------RSVHGFIVRRFDFNCILGTAAIDM 353

Query: 286 LGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
             + G L  A+  + +M    D ++W  ++  C  H
Sbjct: 354 YSKCGSLASAQ-MLFNMISDRDLILWNAMIACCGAH 388



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 96/201 (47%), Gaps = 3/201 (1%)

Query: 115 AQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDS 174
           ++ G P  AL +FR +      P+S      LSACA+LG L  G  V         K D 
Sbjct: 85  SRRGSPASALRVFRALPPA-ARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDV 143

Query: 175 ILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK 234
            +C++L+ +YA+ G++  A++VF     +D   +++ + G    G  ++A +++  M+  
Sbjct: 144 FVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMRED 203

Query: 235 GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEE 294
           G+  D +  I V+ AC+    V  G    H     HG++ ++     +VD+  + GLL+ 
Sbjct: 204 GVKGDEVVMIGVIQACTAARNVRMG-ASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDV 262

Query: 295 AENFIASMPMKPDNVIWGTLL 315
           A      M  + D V W  ++
Sbjct: 263 ACRVFGLMVHRND-VSWSAMI 282



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 123/287 (42%), Gaps = 42/287 (14%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++++    DV    SL+  Y+  G +  A  VF      + VSW++MI+G+ +NG+  E 
Sbjct: 235 LLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEA 294

Query: 62  LKLFDKM------PQRNDV---------------------------SWNSILGGLV---- 84
           L+LF  M      P    +                            +N ILG       
Sbjct: 295 LRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDFNCILGTAAIDMY 354

Query: 85  -RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
            + GS+  A  +FN +  R L+ W  +I+    +GR ++AL LF+EM    + P+ A   
Sbjct: 355 SKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFA 414

Query: 144 SLLSACAQLGALDYGN-WVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           SLLSA +  G ++ G  W    +    I         L+D+ A+ G ++ A  +  S   
Sbjct: 415 SLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKA 474

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFE-LFENMKSKGISPDSISYIAVLS 248
           +   A   A+    +N   +E  E + +N+    + PD +  +A++S
Sbjct: 475 EPTVAIWVALLSGCLNNKKLELGESIADNILE--LQPDDVGVLALVS 519


>gi|414588833|tpg|DAA39404.1| TPA: hypothetical protein ZEAMMB73_882385 [Zea mays]
          Length = 668

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/549 (35%), Positives = 316/549 (57%), Gaps = 44/549 (8%)

Query: 7   FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFD 66
           F  D +  ++L+  Y  C R  DAR  FDE    + V   +M +G +RN  +   L +F 
Sbjct: 120 FPSDAYCASALLHMYHHCFRPLDARRAFDEIPTPNPVIVTAMASGCMRNNLVYTTLSIFR 179

Query: 67  KM------------------------PQRNDVSW-----------------NSILGGLVR 85
            M                        P R                      N+I+    +
Sbjct: 180 SMVASGSAGVVDEAAALVALSASARVPDRGITGGIHALVSKIGLDGQTGVANTIIDAYAK 239

Query: 86  FGSVD-DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL--DLEPNSAIL 142
            G  D  A R    M  R +VSW  +I+ +AQNG   EAL L+ +M  +  D+  N+  L
Sbjct: 240 GGGHDLGAARKLFDMMDRDVVSWNTMIALYAQNGLSTEALGLYSKMLIVGGDVRCNAVTL 299

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            ++L ACA  GA+  G  +++ + +  ++ +  +  +++DMY+KCG +++A + F     
Sbjct: 300 SAVLLACAHAGAIQTGKRIHNQVVRMGLEDNVYVGTSVVDMYSKCGKVEMAWKAFQKIKG 359

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           K++ ++++ I G  M+G+  EA  +F +M+  G+ P+ I++I VL+ACSH G + +G Y+
Sbjct: 360 KNILSWSAMIAGYGMHGYGQEALHVFTDMRKSGLKPNYITFITVLAACSHAGLLSEGRYW 419

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           +++M    GI+P ++HY CMVDLLGRAG L+EA   I  M +KPD  +WG LL ACR+++
Sbjct: 420 YNTMKTEFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAALWGALLSACRIYK 479

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           N E+ +     L E D  + G Y+LLSNIY E    +  E +R  ++ R I++ PG S +
Sbjct: 480 NVELAKICAERLFELDATNSGYYVLLSNIYAEAGMWKEVERMRVLVKTRGIEKPPGYSSV 539

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           EL G  H F  GD+SH + +EIY + E+++++I + GY   T SV+ D++ EE+E+++  
Sbjct: 540 ELKGKTHLFYVGDKSHPQYKEIYAYLEKLLERIHDAGYVPNTGSVLHDLDVEERESMLRI 599

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSEKLA+AF L+ +  GSVI ++KN+R+C+DCH+A+K+++K+  R+I IRD K +HHF+D
Sbjct: 600 HSEKLAVAFALMNSVQGSVIHVIKNLRVCTDCHAAIKIITKLTGREIIIRDLKRFHHFKD 659

Query: 503 GSCSCLEYW 511
           G CSC +YW
Sbjct: 660 GLCSCGDYW 668



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 78/157 (49%), Gaps = 12/157 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VV+     +V+V  S++  YS CG+V  A   F +    +++SW++MI GY  +G   E 
Sbjct: 322 VVRMGLEDNVYVGTSVVDMYSKCGKVEMAWKAFQKIKGKNILSWSAMIAGYGMHGYGQEA 381

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMP-----KRSLVSWVVLIS 112
           L +F  M +     N +++ ++L      G + +    +N M      +  +  +  ++ 
Sbjct: 382 LHVFTDMRKSGLKPNYITFITVLAACSHAGLLSEGRYWYNTMKTEFGIEPGVEHYGCMVD 441

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
              + G   EA  L +EM+   ++P++A+  +LLSAC
Sbjct: 442 LLGRAGCLDEAYGLIKEMK---VKPDAALWGALLSAC 475


>gi|297811673|ref|XP_002873720.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319557|gb|EFH49979.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 623

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/515 (39%), Positives = 317/515 (61%), Gaps = 23/515 (4%)

Query: 16  SLIQFYSVCGRVRDARWVFDESDD---------LDVVSWNSMINGYVRNGEILEGLKLFD 66
           SL+  + VC ++ D R  F E              V   N++++ Y + G + E  ++F 
Sbjct: 113 SLVCLFGVCAKLEDLR--FGEQGHGVAVKMGFLTSVKVCNALMDMYGKCGFVSEVKRIFQ 170

Query: 67  KMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALAL 126
            + +++ VSW  +L  LV++  +     VF++MP+R++V+W ++++G+   G  +E L L
Sbjct: 171 ALEEKSVVSWTVVLDTLVKWEGLKRGREVFDEMPERNVVAWTLMVAGYLGAGFTREVLEL 230

Query: 127 FREMQ-SLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKL------DSILCA- 178
             EM        N   L S+LSACAQ G L  G WV+ Y  KK + +      D ++   
Sbjct: 231 LAEMVFRCGHGLNFVTLCSMLSACAQSGNLVIGRWVHVYALKKAMMMGEEETYDGVMVGT 290

Query: 179 ALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISP 238
           AL+DMYAKCG+ID +++VF     ++V  + +   GLAM+G      ++F  M  + + P
Sbjct: 291 ALVDMYAKCGNIDSSIKVFRLMRKRNVVTWNALFSGLAMHGKGRMVIDMFPEM-VREVKP 349

Query: 239 DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENF 298
           D +++ A+LSACSHLG V++G+  FHS+   +G++P++DHYACMVD+LGRAG +EEAE  
Sbjct: 350 DDLTFTALLSACSHLGMVDEGWRCFHSL-QFYGLEPKVDHYACMVDILGRAGRIEEAEIL 408

Query: 299 IASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKG 358
           +  MP+ P+ V+ G+LLG+C VH   E+ +RI   LI+    H    IL+SN+YV   + 
Sbjct: 409 MREMPVPPNEVVLGSLLGSCSVHGKLEIAERIKRELIQMSPGHTEYQILMSNMYVAEGRS 468

Query: 359 ENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNY 418
           + A+ +R ++R R I++ PG S I ++  VH F +GDRSH +T+E+Y    E++++I++ 
Sbjct: 469 DIADGLRGSLRNRGIRKIPGLSSIYVNDSVHRFSSGDRSHPRTKEVYLKLNEVIERIRSA 528

Query: 419 GYNVETRSVMFDIEE--EEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHS 476
           GY  +   ++   E   EEKE  +  HSEKLA+ FGL+ TKP + + + KN+RIC DCHS
Sbjct: 529 GYVPDISGLVSPSEGDLEEKEQALCCHSEKLAVCFGLLETKPRTPLLVFKNLRICRDCHS 588

Query: 477 AMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           AMK+VSKV+ R+I IRDR  +H F+ GSCSC +YW
Sbjct: 589 AMKIVSKVYDREIIIRDRNRFHQFKGGSCSCSDYW 623



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 73/152 (48%), Gaps = 2/152 (1%)

Query: 87  GSVDDACRVFNQMP--KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
           G +  A ++F+++P   +  V W  L+S F++ G    ++ LF EM+   +E +   LV 
Sbjct: 57  GEIATAQKLFDEIPLSDKDNVDWTTLLSSFSRFGLLVNSMKLFVEMRRKRVEIDHVSLVC 116

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           L   CA+L  L +G   +    K        +C AL+DMY KCG +    ++F +  +K 
Sbjct: 117 LFGVCAKLEDLRFGEQGHGVAVKMGFLTSVKVCNALMDMYGKCGFVSEVKRIFQALEEKS 176

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGI 236
           V ++T  +  L          E+F+ M  + +
Sbjct: 177 VVSWTVVLDTLVKWEGLKRGREVFDEMPERNV 208



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 74/178 (41%), Gaps = 12/178 (6%)

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIK--LDSILCAALIDMYAKCGSIDLAMQVFH--SY 200
           LL   A    L  G  +++ +    +K    S L  AL   YA  G I  A ++F     
Sbjct: 12  LLRQSAHRSFLHPGRELHAVLTTSGLKKAPRSYLSNALFQFYASSGEIATAQKLFDEIPL 71

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSH---LGWVE 257
            DKD   +T+ +   +  G  + + +LF  M+ K +  D +S + +   C+    L + E
Sbjct: 72  SDKDNVDWTTLLSSFSRFGLLVNSMKLFVEMRRKRVEIDHVSLVCLFGVCAKLEDLRFGE 131

Query: 258 KGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
           +G    H +    G    +     ++D+ G+ G + E +    ++  K   V W  +L
Sbjct: 132 QG----HGVAVKMGFLTSVKVCNALMDMYGKCGFVSEVKRIFQALEEK-SVVSWTVVL 184


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/542 (36%), Positives = 309/542 (57%), Gaps = 40/542 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++++ F +D+ + N+L+  Y+ CG + +AR VF++    D V+W ++I+GY ++    + 
Sbjct: 86  ILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDA 145

Query: 62  LKLFDKMPQ----RNDVSWNSILGG----------------------------------- 82
           L  F++M +     N+ + +S++                                     
Sbjct: 146 LLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDL 205

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             R+G +DDA  VF+ +  R+ VSW  LI+G A+    ++AL LF+ M      P+    
Sbjct: 206 YTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSY 265

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            SL  AC+  G L+ G WV++Y+ K   KL +     L+DMYAK GSI  A ++F     
Sbjct: 266 ASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAK 325

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           +DV ++ S +   A +G   EA   FE M+  GI P+ IS+++VL+ACSH G +++G++Y
Sbjct: 326 RDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHY 385

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           +  M    GI PE  HY  +VDLLGRAG L  A  FI  MP++P   IW  LL ACR+H+
Sbjct: 386 YELM-KKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHK 444

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           N E+G      + E D +  G +++L NIY    +  +A  VRK M++  +K+ P CS +
Sbjct: 445 NTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWV 504

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E++  +H F+A D  H + +EI + WEE++ KIK  GY  +T  V+  ++++E+E  + Y
Sbjct: 505 EIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQY 564

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSEK+ALAF L+ T PGS I I KNIR+C DCH+A+KL SKV  R+I +RD   +HHF+D
Sbjct: 565 HSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKD 624

Query: 503 GS 504
            S
Sbjct: 625 AS 626



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 136/274 (49%), Gaps = 8/274 (2%)

Query: 48  MINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSW 107
           +I G + +  IL+ +   D       V  N++L    + GS+++A +VF +MP+R  V+W
Sbjct: 76  LIQGRIVHAHILQSIFRHDI------VMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTW 129

Query: 108 VVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK 167
             LISG++Q+ RP +AL  F +M      PN   L S++ A A       G+ ++ +  K
Sbjct: 130 TTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVK 189

Query: 168 KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFEL 227
                +  + +AL+D+Y + G +D A  VF +   ++  ++ + I G A    + +A EL
Sbjct: 190 CGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALEL 249

Query: 228 FENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLG 287
           F+ M   G  P   SY ++  ACS  G++E+G  + H+     G K        ++D+  
Sbjct: 250 FQGMLRDGFRPSHFSYASLFGACSSTGFLEQG-KWVHAYMIKSGEKLVAFAGNTLLDMYA 308

Query: 288 RAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           ++G + +A      +  K D V W +LL A   H
Sbjct: 309 KSGSIHDARKIFDRL-AKRDVVSWNSLLTAYAQH 341



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 80/182 (43%), Gaps = 18/182 (9%)

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           +LL  C     L  G  V+++I +   + D ++   L++MYAKCGS++ A +VF     +
Sbjct: 65  TLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQR 124

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA--------CSHLGW 255
           D   +T+ I G + +    +A   F  M   G SP+  +  +V+ A        C H   
Sbjct: 125 DFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGH--- 181

Query: 256 VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
                   H      G    +   + ++DL  R GL+++A+    ++  + D V W  L+
Sbjct: 182 ------QLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRND-VSWNALI 234

Query: 316 GA 317
             
Sbjct: 235 AG 236


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/544 (36%), Positives = 309/544 (56%), Gaps = 40/544 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           VK  F+ +V   N+L+  YS CG +  A  VF +  D  +VSW S+I  YVR G   + +
Sbjct: 323 VKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAI 382

Query: 63  KLFDKMPQR---------------------------------------NDVSWNSILGGL 83
            LFD+M  +                                       N    N+++   
Sbjct: 383 GLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMY 442

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
            + GSV++A  VF+++P + +VSW  +I G++QN  P EAL LF +MQ    +P+   + 
Sbjct: 443 AKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQK-QFKPDDITMA 501

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
            +L ACA L ALD G  ++ +I ++    D  +  AL+DMYAKCG + LA  +F     K
Sbjct: 502 CVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKK 561

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           D+ ++T  I G  M+G   EA   F  M+  GI PD  S+ A+L+ACSH G + +G+ +F
Sbjct: 562 DLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFF 621

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
           +SM +  G++P+L+HYAC+VDLL R G L +A  FI SMP+KPD  IWG LL  CR+H +
Sbjct: 622 NSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHD 681

Query: 324 AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE 383
            ++ +++   + E + ++   Y++L+N+Y E  K E  +++RK M+KR  K+ PGCS IE
Sbjct: 682 VKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIE 741

Query: 384 LDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYH 443
           + G  + F+AG+  H + ++I     ++  +++N  Y+   R V+ + ++ EKE +   H
Sbjct: 742 VGGKFNIFVAGNSKHPQAKKIDVLLSKLTMQMQNEDYSSMFRYVLINEDDMEKEMIQCGH 801

Query: 444 SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
           SEK A+AFG++   PG  +R+ KN R+C DCH   K +SK  K +I +RD   +HHF+DG
Sbjct: 802 SEKSAMAFGILNLPPGRTVRVSKNRRVCGDCHEMGKFMSKTTKMEIVLRDSNRFHHFKDG 861

Query: 504 SCSC 507
            CSC
Sbjct: 862 LCSC 865



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 95/356 (26%), Positives = 167/356 (46%), Gaps = 41/356 (11%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +++ N  + D  +   L+  Y  CG +   R +FD+  +  V  WN +++ Y + G   E
Sbjct: 119 VIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRE 178

Query: 61  GLKLFDKMPQ---------------------------------------RNDVSWNSILG 81
            + LF KM +                                        N    NS++ 
Sbjct: 179 SVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIA 238

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              +FG V+ A  +F+++ +  +VSW  +I+G   NG     L +F +M  L +E +   
Sbjct: 239 AYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTT 298

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           LVS+L ACA +G L  G  ++ +  K C   + +    L+DMY+KCG+++ A +VF   G
Sbjct: 299 LVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMG 358

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
           D  + ++TS I      G   +A  LF+ M+SKG+ PD  +  +++ AC+    ++KG  
Sbjct: 359 DTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKG-R 417

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
             HS    +G+   L     ++++  + G +EEA    + +P+K D V W T++G 
Sbjct: 418 DVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVK-DIVSWNTMIGG 472



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 146/297 (49%), Gaps = 62/297 (20%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+KN    ++ V N+LI  Y+ CG V +AR VF +    D+VSWN+MI GY +N    E 
Sbjct: 423 VIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEA 482

Query: 62  LKLFDKMPQR---NDVSWNSIL----------------GGLVRFGSVDD---ACR----- 94
           L+LF  M ++   +D++   +L                G ++R G   D   AC      
Sbjct: 483 LELFLDMQKQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMY 542

Query: 95  -----------VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
                      +F+ +PK+ L+SW V+I+G+  +G   EA++ F EM+   +EP+ +   
Sbjct: 543 AKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFS 602

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKC---IKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
           ++L+AC+  G L+ G   ++ ++ +C    KL+   C  ++D+ A+ G++  A +   S 
Sbjct: 603 AILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYAC--VVDLLARMGNLSKAYKFIESM 660

Query: 201 GDKDVSAYTSAIFGLAMNG----HSIEAFE-----LFENMKSKGISPDSISYIAVLS 248
             K      + I+G+ ++G    H ++  E     +FE      + PD+  Y  VL+
Sbjct: 661 PIKP----DTTIWGVLLSGCRIHHDVKLAEKVAEHIFE------LEPDNTRYYVVLA 707



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 124/253 (49%), Gaps = 8/253 (3%)

Query: 14  KNSLIQFYSVCGRVRDARWVFDESD--DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQR 71
           +N+ I  +   G +R+A  +  +S   +L + S+ S++        + +G ++   +   
Sbjct: 64  QNAKINKFCEMGDLRNAIELLTKSKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIIS- 122

Query: 72  NDVSWNSILGGLVRF-----GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALAL 126
           N +S +  LG  + F     G +    ++F+++    +  W +L+S +A+ G  +E+++L
Sbjct: 123 NGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSL 182

Query: 127 FREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAK 186
           F++MQ L +  N      +L   A LG +     V+ Y+ K     ++ +  +LI  Y K
Sbjct: 183 FKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFK 242

Query: 187 CGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAV 246
            G ++ A  +F    + DV ++ S I G  +NG S    E+F  M   G+  D  + ++V
Sbjct: 243 FGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSV 302

Query: 247 LSACSHLGWVEKG 259
           L AC+++G +  G
Sbjct: 303 LVACANIGNLSLG 315


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/510 (38%), Positives = 289/510 (56%), Gaps = 27/510 (5%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VVK     D  V  +LI  Y  CGR  +   VF ES  +DV S N+++ G  RN ++ E 
Sbjct: 179 VVKAGCRLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVSEA 238

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
           L LF +                         CR      + ++VSW  +++   QNGR  
Sbjct: 239 LLLFREF-----------------------ICRGV----ELNVVSWTSIVACCVQNGRDL 271

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
           EA+ LFR MQS+ +EPNS  +  +L A A + AL +G   + +  +K    D  + +AL+
Sbjct: 272 EAVDLFRTMQSIGVEPNSVTIPCVLPAFANVAALMHGRSAHCFSLRKGFLHDVYVGSALV 331

Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
           DMYAKCG    A  +F +   ++V ++ + I G AM+G +  A +LF +M+     PD +
Sbjct: 332 DMYAKCGKARHARTIFDAMPSRNVVSWNAMIGGYAMHGDAANAVQLFCSMQKCKQKPDLV 391

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
           ++  VL ACS  G  E+G  YF+ M   HGI P ++HYACMV LLGR+G L+EA + I  
Sbjct: 392 TFTCVLGACSQAGLTEEGRRYFNEMQQGHGISPRMEHYACMVTLLGRSGKLDEAYDLINE 451

Query: 302 MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361
           MP +PD+ IWG+LLG+CRV+ N  + +     L + +  + G Y+LLSNIY      +  
Sbjct: 452 MPFEPDSCIWGSLLGSCRVYGNVLLAEVAAEKLFQLEPGNAGNYVLLSNIYASKKMWDGV 511

Query: 362 EEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYN 421
             VR  M+   +K+  GCS IE+   VH  LAGD SH     I +   ++  ++   G+ 
Sbjct: 512 NRVRDEMKNMGLKKEKGCSWIEIKNKVHMLLAGDNSHPMMTAITEKLNQLTIEMNRLGFA 571

Query: 422 VETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLV 481
                V+ D+EE+EK+ ++  HSEKLA+A GLI T+PG+ +R++KN+RIC DCH AMK +
Sbjct: 572 PSRDFVLHDVEEQEKDNILAVHSEKLAVALGLISTRPGTPLRVIKNLRICGDCHEAMKFI 631

Query: 482 SKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           S   +R+IS+RD   +HHF+DG CSC +YW
Sbjct: 632 SSFEQREISVRDTNRFHHFKDGKCSCGDYW 661



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 146/318 (45%), Gaps = 41/318 (12%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMP----K 101
           +S+++ Y+R G       +FD+MP++N V W++++ G    G  + A  +  QM     +
Sbjct: 56  SSLLHSYIRLGATGAARSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVE 115

Query: 102 RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161
            ++++W  L+SG  ++GR  +A+     M S    P++  +   LSA   +  +  G  V
Sbjct: 116 PNVITWNGLVSGLNRSGRALDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQV 175

Query: 162 YSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLA----- 216
           + Y+ K   +LD+ +  ALIDMY KCG  D  ++VFH     DV++  + + GL+     
Sbjct: 176 HGYVVKAGCRLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQV 235

Query: 217 ------------------------------MNGHSIEAFELFENMKSKGISPDSISYIAV 246
                                          NG  +EA +LF  M+S G+ P+S++   V
Sbjct: 236 SEALLLFREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCV 295

Query: 247 LSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKP 306
           L A +++  +  G    H      G   ++   + +VD+  + G    A     +MP + 
Sbjct: 296 LPAFANVAALMHG-RSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSR- 353

Query: 307 DNVIWGTLLGACRVHRNA 324
           + V W  ++G   +H +A
Sbjct: 354 NVVSWNAMIGGYAMHGDA 371


>gi|218185168|gb|EEC67595.1| hypothetical protein OsI_34962 [Oryza sativa Indica Group]
          Length = 838

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 184/519 (35%), Positives = 305/519 (58%), Gaps = 38/519 (7%)

Query: 7   FAYDVFVKNSLIQFYSVCGRV--------------RDARWVFDESDDLDVVSWNSMINGY 52
           F YD+  K +L++ +   GR+               +   + +     D V   ++++ +
Sbjct: 344 FHYDI--KGNLLEKFQCSGRMLNITPHILQESLVPHEVCQILNNETSCDRVLGAALLDVF 401

Query: 53  VRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLIS 112
            R G I    K+FD++   +  +WN++L    R  + D AC                   
Sbjct: 402 ARCGRIASCRKVFDRIANPDLPAWNALLSAYARLRARDVAC------------------- 442

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKL 172
               +      L +F  M SL ++PN   LV+++ AC +LGA+ +G W ++Y  K+ + +
Sbjct: 443 ---ASSAADAILEMFVRMLSLAIKPNEITLVAVIGACGELGAVSHGVWAHTYAVKRRLAV 499

Query: 173 DSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMK 232
           + I+  AL++MYA CG +DLA QVF +  D+D   Y + + GLA++GH   A  LF+ M 
Sbjct: 500 NCIVATALVEMYAGCGRLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRAALSLFDRMH 559

Query: 233 SKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLL 292
            +G+  D ++ ++V+ AC+H G V++G  YF  M    GI+P ++HY CMVD+L RAG L
Sbjct: 560 GEGVPVDGVTVLSVMCACAHAGLVDEGLDYFDRMEIEFGIEPSIEHYGCMVDMLSRAGRL 619

Query: 293 EEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIY 352
            +AE  I  MP+ P+  I+ +L+ AC +H   E+G+++   L+  + +  G ++L+SN Y
Sbjct: 620 NDAEKLIHGMPIVPNAAIYRSLIRACGIHGKLELGKKMIAELMRLEPDDSGNHVLISNFY 679

Query: 353 VETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIV 412
             T + ++A++ RK M+   I ++PG S ++++GV+HEFL GD++H  ++EIY   E+I 
Sbjct: 680 ATTNRWDDAKKARKEMKSMGIDKSPGSSFVDINGVLHEFLVGDKTHPASKEIYAMVEDIE 739

Query: 413 KKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICS 472
            ++   G+   T S +FD+EEE+K   + YHSE+LA+AF LI + PG+ IRI+KN+R+C+
Sbjct: 740 TRLSECGHRSSTSSALFDVEEEDKADALSYHSERLAIAFALIASNPGAPIRIIKNLRVCA 799

Query: 473 DCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           DCH + KLVS+V+ R+I +RDR  +HHF DG CSC ++W
Sbjct: 800 DCHESAKLVSRVYGREIVMRDRTRFHHFRDGVCSCGDFW 838



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 12/166 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
            VK   A +  V  +L++ Y+ CGR+  A  VF  + D D   +N+M++G   +G     
Sbjct: 492 AVKRRLAVNCIVATALVEMYAGCGRLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRAA 551

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMP-----KRSLVSWVVLIS 112
           L LFD+M       + V+  S++      G VD+    F++M      + S+  +  ++ 
Sbjct: 552 LSLFDRMHGEGVPVDGVTVLSVMCACAHAGLVDEGLDYFDRMEIEFGIEPSIEHYGCMVD 611

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
             ++ GR  +A  L   M    + PN+AI  SL+ AC   G L+ G
Sbjct: 612 MLSRAGRLNDAEKLIHGMP---IVPNAAIYRSLIRACGIHGKLELG 654



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 53/268 (19%), Positives = 110/268 (41%), Gaps = 50/268 (18%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVR------- 54
           ++ N  + D  +  +L+  ++ CGR+   R VFD   + D+ +WN++++ Y R       
Sbjct: 382 ILNNETSCDRVLGAALLDVFARCGRIASCRKVFDRIANPDLPAWNALLSAYARLRARDVA 441

Query: 55  -----NGEILEG-LKLFDKMPQRNDVSWNSILGGLVRFGSV------------------- 89
                   ILE  +++     + N+++  +++G     G+V                   
Sbjct: 442 CASSAADAILEMFVRMLSLAIKPNEITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVNC 501

Query: 90  ----------------DDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL 133
                           D A +VF     R    +  ++ G A +G  + AL+LF  M   
Sbjct: 502 IVATALVEMYAGCGRLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRAALSLFDRMHGE 561

Query: 134 DLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI-LCAALIDMYAKCGSIDL 192
            +  +   ++S++ ACA  G +D G   +  ++ +     SI     ++DM ++ G ++ 
Sbjct: 562 GVPVDGVTVLSVMCACAHAGLVDEGLDYFDRMEIEFGIEPSIEHYGCMVDMLSRAGRLND 621

Query: 193 AMQVFHSYG-DKDVSAYTSAIFGLAMNG 219
           A ++ H      + + Y S I    ++G
Sbjct: 622 AEKLIHGMPIVPNAAIYRSLIRACGIHG 649


>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
          Length = 697

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/549 (36%), Positives = 324/549 (59%), Gaps = 40/549 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           V+  F  +VFV+ +L+  YS  G +  AR +F+   + +VVSWN++++GY  +G   E +
Sbjct: 149 VRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFSEEAI 208

Query: 63  KLFDKMPQRND-VSWNSIL-------------------GGLVRFG--------------- 87
            LF+ M ++   V + +I+                   G ++R G               
Sbjct: 209 DLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIY 268

Query: 88  ----SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL-DLEPNSAIL 142
                VDDA RVF++M  + + +W ++++GF+       A+  F +M  + +L+ +S +L
Sbjct: 269 VSHNCVDDAHRVFSEMFVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIVL 328

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           + +LS+C+  GAL  G  V++   K C   +  + +A+IDMYA CG+++ A + F+  G+
Sbjct: 329 MGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGE 388

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           KDV  + + I G  MNG+  +A +LF  MK  G+ PD  ++++VL ACSH G V +G   
Sbjct: 389 KDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQI 448

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F+ M       P L HYAC++D+LGRAG L+ A +FI +MP +PD  ++ TLLGACR+H 
Sbjct: 449 FYHMVKTSHDIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHG 508

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           N ++G  I   + E + N  G Y+LLSN+Y      E  +  R ++R +++K+ PG S I
Sbjct: 509 NIKLGHEISQKIFEMEPNDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRLKKDPGFSSI 568

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E++  ++ F+AG++ H +  +I    + ++ KIK  GY   T  ++ D+ ++ K+ ++ +
Sbjct: 569 EINQEIYTFMAGEKDHPQYFKIEGILKGLILKIKKAGYVPNTNVLLQDVSDDMKKDILYH 628

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSEK+A+AFGL+ TKPG++IRI KN+R C+DCHSA K VSKVF R + I+D   +H F+D
Sbjct: 629 HSEKMAIAFGLMRTKPGTIIRITKNLRTCNDCHSASKFVSKVFGRVLVIKDANRFHVFQD 688

Query: 503 GSCSCLEYW 511
           G CSC +YW
Sbjct: 689 GVCSCRDYW 697



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/356 (26%), Positives = 170/356 (47%), Gaps = 42/356 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++ +   ++ F+ NSL+  Y  CG + DA+ +F  +   +VVSW  +I+G  +N   +E 
Sbjct: 47  IITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPCKNVVSWTILISGLAKNDCFVEA 106

Query: 62  LKLFDKMP----QRNDVSWNSILG-----GLVR--------------------------- 85
           + +F +M     + N V+ +S+L      GL+R                           
Sbjct: 107 IDVFREMTMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDM 166

Query: 86  ---FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
              FG +  A ++F  M +R++VSW  ++SG++ +G  +EA+ LF  M+   L  +   +
Sbjct: 167 YSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTI 226

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           +SL+ A   +G L  G  ++ +I +   + D  +  AL+D+Y     +D A +VF     
Sbjct: 227 MSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMFV 286

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKS-KGISPDSISYIAVLSACSHLGWVEKGFY 261
           KDV+A+T  + G +   H   A + F  M   + +  DSI  + +LS+CSH G +++G  
Sbjct: 287 KDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIVLMGILSSCSHSGALQQG-R 345

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
             H++         +   + ++D+    G LE+A+ F   M  K D V W  ++  
Sbjct: 346 RVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEK-DVVCWNAMIAG 400



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 63/289 (21%), Positives = 122/289 (42%), Gaps = 44/289 (15%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++  +  D  +K +L+  Y     V DA  VF E    DV +W  M+ G+         
Sbjct: 249 IIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMFVKDVAAWTLMLTGFSSGRHWDRA 308

Query: 62  LKLFDKMPQRNDVSWNSIL-----------GGL--------------------------- 83
           +K F+KM    ++  +SI+           G L                           
Sbjct: 309 IKHFNKMLGIQNLKLDSIVLMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVID 368

Query: 84  --VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
                G+++DA R F  M ++ +V W  +I+G   NG   +A+ LF +M+   L+P+ + 
Sbjct: 369 MYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDEST 428

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSIL-CAALIDMYAKCGSIDLAMQVFHSY 200
            VS+L AC+  G +  G  ++ ++ K    + ++   A +ID+  + G +D A    ++ 
Sbjct: 429 FVSVLYACSHAGMVYEGLQIFYHMVKTSHDIPNLQHYACVIDILGRAGQLDAAYSFINNM 488

Query: 201 G-DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248
               D   Y++ +    ++G+     E+ + +    + P+   Y  +LS
Sbjct: 489 PFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFE--MEPNDAGYYVLLS 535



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 93/201 (46%), Gaps = 19/201 (9%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + +K  FA ++FV +++I  Y+ CG + DA+  F    + DVV WN+MI G   NG   +
Sbjct: 350 LAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTD 409

Query: 61  GLKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRS-----LVSWVVLI 111
            + LF +M       ++ ++ S+L      G V +  ++F  M K S     L  +  +I
Sbjct: 410 AIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHDIPNLQHYACVI 469

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK 171
               + G+   A +    M     +P+  +  +LL AC   G +  G+     I +K  +
Sbjct: 470 DILGRAGQLDAAYSFINNMP---FQPDFDVYSTLLGACRIHGNIKLGH----EISQKIFE 522

Query: 172 L---DSILCAALIDMYAKCGS 189
           +   D+     L +MYA  G+
Sbjct: 523 MEPNDAGYYVLLSNMYALAGN 543



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 93/215 (43%), Gaps = 2/215 (0%)

Query: 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
           P      +R + S   +    +  S  S   +L  L     +++ I    +  ++ L  +
Sbjct: 2   PPVNFNFYRHLSSNPTQRLCPLAQSHASILRKLKDLKPLQQIHAQIITSGLTHNTFLSNS 61

Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
           L++ Y  CG +  A Q+FH    K+V ++T  I GLA N   +EA ++F  M      P+
Sbjct: 62  LMNAYVYCGLLADAKQIFHHTPCKNVVSWTILISGLAKNDCFVEAIDVFREMTMGNFKPN 121

Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI 299
           +++  +VL A ++LG +       H  +   G +  +     +VD+  + G +  A    
Sbjct: 122 AVTISSVLPAFANLGLIRIA-KSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLF 180

Query: 300 ASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNML 334
            SM  + + V W  ++     H  +E    + N++
Sbjct: 181 ESMSER-NVVSWNAIVSGYSDHGFSEEAIDLFNLM 214


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/549 (36%), Positives = 316/549 (57%), Gaps = 40/549 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNG----- 56
           VV N    D+ + N L+  Y+    + DA  +FD     D  +W+ M+ G+ + G     
Sbjct: 26  VVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGFAKAGDHAGC 85

Query: 57  -----EILE-------------------------GLKLFDKMPQRNDVSWNSILGGLVRF 86
                E+L                          G  + D + +   +S + +   LV  
Sbjct: 86  YATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLSDHFVCASLVDM 145

Query: 87  GS----VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
            +    V+DA R+F +M  + LV+W V+I  +A +    E+L LF  M+   + P+   +
Sbjct: 146 YAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYA-DCNAYESLVLFDRMREEGVVPDKVAM 204

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           V++++ACA+LGA+    +   YI +    LD IL  A+IDMYAKCGS++ A +VF    +
Sbjct: 205 VTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTAMIDMYAKCGSVESAREVFDRMKE 264

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           K+V ++++ I     +G   +A +LF  M S  I P+ ++++++L ACSH G +E+G  +
Sbjct: 265 KNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYACSHAGLIEEGLRF 324

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F+SM++ H ++P++ HY CMVDLLGRAG L+EA   I +M ++ D  +W  LLGACR+H 
Sbjct: 325 FNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMTVEKDERLWSALLGACRIHS 384

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
             E+ ++  N L+E    + G Y+LLSNIY +  K E   + R  M +RK+K+ PG + I
Sbjct: 385 KMELAEKAANSLLELQPQNPGHYVLLSNIYAKAGKWEKVAKFRDMMTQRKLKKIPGWTWI 444

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E+D   ++F  GDRSH +++EIY+    ++KK++  GY  +T  V+ D+EEE K+ ++  
Sbjct: 445 EVDNKTYQFSVGDRSHPQSKEIYEMLMSLIKKLEMAGYVPDTDFVLQDVEEEVKQEMLYT 504

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSEKLA+AFGLI    G  IRI KN+R+C DCH+  K+VS + +R I +RD   +HHF D
Sbjct: 505 HSEKLAIAFGLIAIPEGEPIRISKNLRVCGDCHTFSKMVSSIMRRSIIVRDANRFHHFND 564

Query: 503 GSCSCLEYW 511
           G+CSC +YW
Sbjct: 565 GTCSCGDYW 573



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 118/254 (46%), Gaps = 41/254 (16%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V+K+    D FV  SL+  Y+ C  V DA+ +F+     D+V+W  MI  Y  +    E
Sbjct: 126 VVLKHGLLSDHFVCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYA-DCNAYE 184

Query: 61  GLKLFDKMPQ----------------------------------RNDVSWNSILGGLV-- 84
            L LFD+M +                                  RN  S + ILG  +  
Sbjct: 185 SLVLFDRMREEGVVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTAMID 244

Query: 85  ---RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + GSV+ A  VF++M +++++SW  +I+ +  +GR K+A+ LF  M S  + PN   
Sbjct: 245 MYAKCGSVESAREVFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVT 304

Query: 142 LVSLLSACAQLGALDYG-NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
            VSLL AC+  G ++ G  +  S  ++  ++ D      ++D+  + G +D A+++  + 
Sbjct: 305 FVSLLYACSHAGLIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAM 364

Query: 201 GDKDVSAYTSAIFG 214
             +      SA+ G
Sbjct: 365 TVEKDERLWSALLG 378



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 72/159 (45%), Gaps = 6/159 (3%)

Query: 161 VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGH 220
           V++++       D ++   L+  YA+  +ID A  +F     +D   ++  + G A  G 
Sbjct: 22  VHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGFAKAGD 81

Query: 221 SIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA 280
               +  F  +   G++PD+ +   V+  C     ++ G    H +   HG+    DH+ 
Sbjct: 82  HAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIG-RVIHDVVLKHGLLS--DHFV 138

Query: 281 C--MVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
           C  +VD+  +  ++E+A+     M +  D V W  ++GA
Sbjct: 139 CASLVDMYAKCIVVEDAQRLFERM-LSKDLVTWTVMIGA 176


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 205/552 (37%), Positives = 313/552 (56%), Gaps = 45/552 (8%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRN------ 55
            +K     D+ V N+L+  Y  CG +  +  VF+     D +SW +++  + ++      
Sbjct: 393 AIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILACFAQSSRHSEA 452

Query: 56  -------------------GEILE---GLKLFDKMPQRNDVSWNSILGGLVRF------- 86
                              G ILE   GLK    + Q   V   +I  GL+         
Sbjct: 453 LEMILELQKEGIMVDSMMIGSILETCCGLKSISLLKQ---VHCYAIRNGLLDLILENRLI 509

Query: 87  ------GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
                 G  D +  +F ++ K+ +VSW  +I+    NGR   A+ LF EMQ  +++P+S 
Sbjct: 510 DIYGECGEFDHSLNLFQRVEKKDIVSWTSMINCCTNNGRLNGAVFLFTEMQKANIQPDSV 569

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
            LVS+L A A L +L  G  V+ ++ ++   ++  + ++L+DMY+ CGS++ A++VF   
Sbjct: 570 ALVSILVAIAGLSSLTKGKQVHGFLIRRNFPIEGPVVSSLVDMYSGCGSMNYAIRVFERA 629

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
             KDV  +T+ I    M+GH  +A +LF+ M   G++PD +S++A+L ACSH   VE+G 
Sbjct: 630 KCKDVVLWTAMINATGMHGHGKQAIDLFKRMLQTGLTPDHVSFLALLYACSHSKLVEEGK 689

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
           +Y   M   + +KP  +HYAC+VD+LGR+G  EEA  FI +MPM P + +W  LLGACRV
Sbjct: 690 HYLDIMVSKYRLKPWQEHYACVVDILGRSGQTEEAYEFIKTMPMDPKSAVWCALLGACRV 749

Query: 321 HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS 380
           HRN  +     N L+E + ++ G YIL+SN++ E  K  NA+E R  M +R +++ P CS
Sbjct: 750 HRNYGLAVVAANKLLELEPDNPGNYILVSNVFAEMGKWNNAKETRTRMAERGLRKNPACS 809

Query: 381 LIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVE-TRSVMFDIEEEEKETV 439
            IE+   +H F +GD  H  ++ I+    EI + ++  G  VE TR V+ D  EEEK  +
Sbjct: 810 WIEIGNNIHTFTSGDYCHRDSEAIHLKLSEITEMLRREGGYVEDTRFVLHDTSEEEKIDM 869

Query: 440 IGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHH 499
           +  HSE++A+AFGLI T+PG  IRI KN+R+C DCH   KLVSK+F+R I +RD   +HH
Sbjct: 870 LHKHSERIAIAFGLISTRPGMPIRIAKNLRVCGDCHEFTKLVSKLFERDIVVRDANRFHH 929

Query: 500 FEDGSCSCLEYW 511
           F  GSCSC ++W
Sbjct: 930 FSGGSCSCEDFW 941



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 103/353 (29%), Positives = 162/353 (45%), Gaps = 48/353 (13%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D F+   L+  Y  CGRV DAR +F+      V SWN+++  Y+ +G   E ++++  M 
Sbjct: 94  DGFLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGAYLSSGSAGEAMRVYGAMR 153

Query: 70  ------------------------------------------QRNDVSWNSILGGLVRFG 87
                                                      ++ +  N+++G   + G
Sbjct: 154 ASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVGLDKSTLVANALIGMYAKCG 213

Query: 88  SVDDACRVFN--QMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
            +D A RVF   Q   R + SW  ++SG  QNGR  EALALFR MQS     NS   V++
Sbjct: 214 LLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALFRGMQSAGFPMNSYTSVAV 273

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
           L  CA+LG L  G  +++ +  KC    +I C AL+ MYAK G +D A++VF    +KD 
Sbjct: 274 LQVCAELGLLSLGRELHAALL-KCGSELNIQCNALLVMYAKYGRVDSALRVFGQIAEKDY 332

Query: 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHS 265
            ++ S +     N    EA + F  M   G  PD    +++ SA  HL  +  G   FH+
Sbjct: 333 ISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNG-REFHA 391

Query: 266 MFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
                 +  +L     ++D+  + G +E +     SM ++ D++ W T+L AC
Sbjct: 392 YAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIR-DHISWTTIL-AC 442



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 163/358 (45%), Gaps = 43/358 (12%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFD--ESDDLDVVSWNSMINGYVRNGEI 58
           + VK        V N+LI  Y+ CG +  A  VF+  + D  DV SWNS+++G V+NG  
Sbjct: 189 LAVKVGLDKSTLVANALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRT 248

Query: 59  LEGLKLFDKMPQRN--------------------------------------DVSWNSIL 80
           LE L LF  M                                          ++  N++L
Sbjct: 249 LEALALFRGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALLKCGSELNIQCNALL 308

Query: 81  GGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
               ++G VD A RVF Q+ ++  +SW  ++S + QN    EA+  F EM     +P+ A
Sbjct: 309 VMYAKYGRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHA 368

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
            +VSL SA   L  L+ G   ++Y  K+ +  D  +   L+DMY KCGSI+ + +VF S 
Sbjct: 369 CVVSLSSALGHLSRLNNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESM 428

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
           G +D  ++T+ +   A +    EA E+   ++ +GI  DS+   ++L  C  L  +    
Sbjct: 429 GIRDHISWTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGSILETCCGLKSISL-L 487

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
              H     +G+  +L     ++D+ G  G  + + N    +  K D V W +++  C
Sbjct: 488 KQVHCYAIRNGLL-DLILENRLIDIYGECGEFDHSLNLFQRVE-KKDIVSWTSMINCC 543


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 216/551 (39%), Positives = 315/551 (57%), Gaps = 40/551 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++ K+ F  ++FV  +L+  Y+ C  +  A  VFD+  + ++VSWNSMI G+  N     
Sbjct: 270 LIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDR 329

Query: 61  GLKLF-----DKMPQRNDVSWNSIL------GGL----------VRFGSV---------- 89
            + +F     +K    N+VS +S+L      GGL          V++G V          
Sbjct: 330 AVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTYVMNSLM 389

Query: 90  ---------DDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
                    D+  ++F  +  R +V+W VL+ GF QN + +EA   F  M+   + P+ A
Sbjct: 390 DMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEA 449

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
              ++L + A L AL  G  ++  I K     +  +  +LI MYAKCGS+  A QVF   
Sbjct: 450 SFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGI 509

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
            D +V ++T+ I    ++G + +  ELFE+M S+GI P  ++++ VLSACSH G VE+G 
Sbjct: 510 EDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGL 569

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
            +F+SM  +H + P  +HYACMVDLLGRAG L+EA+ FI SMPMKP   +WG LLGACR 
Sbjct: 570 AHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRK 629

Query: 321 HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS 380
           + N +MG+     L E +  + G Y+LL+N+   + + E A EVR+ M    +++ PGCS
Sbjct: 630 YGNLKMGREAAERLFEMEPYNPGNYVLLANMCTRSGRLEEANEVRRLMGVNGVRKEPGCS 689

Query: 381 LIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVI 440
            I++  +   F A DRSH  + EIY+  E++ K +K  GY  ET  V   +EE E+E  +
Sbjct: 690 WIDVKNMTFVFTAHDRSHSSSDEIYKMLEKLEKLVKKKGYVAETEFVTNHLEENEEEQGL 749

Query: 441 GYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF 500
            YHSEKLALAFGL+     S IRI KN+R C  CH+ MKL SK+F R+I +RD   +H F
Sbjct: 750 WYHSEKLALAFGLLTLPIDSPIRIKKNLRTCGHCHTVMKLASKIFDREIIVRDINRFHRF 809

Query: 501 EDGSCSCLEYW 511
            DG CSC +YW
Sbjct: 810 ADGFCSCGDYW 820



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 133/277 (48%), Gaps = 9/277 (3%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVS----WNSILGGLVRFGSVDDACRVFNQMPK 101
           N ++N  ++   +    ++  ++   N  S    +N+++    + G ++ A  +F+    
Sbjct: 146 NHLLNTAIQTRSLKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITHH 205

Query: 102 --RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGN 159
             +++V+W  LI+  +      +AL+LF +M+     PN     S+LSA A    + +G 
Sbjct: 206 HFKTIVTWTSLITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHGQ 265

Query: 160 WVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNG 219
            ++S I K     +  +  AL+DMYAKC  +  A++VF    ++++ ++ S I G   N 
Sbjct: 266 QLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNN 325

Query: 220 HSIEAFELFEN-MKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDH 278
               A  +F++ ++ K + P+ +S  +VLSAC+++G +  G    H +   +G+ P    
Sbjct: 326 LYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFG-RQVHGVVVKYGLVPLTYV 384

Query: 279 YACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
              ++D+  +    +E       +  + D V W  L+
Sbjct: 385 MNSLMDMYFKCRFFDEGVKLFQCVGDR-DVVTWNVLV 420


>gi|226505202|ref|NP_001141725.1| uncharacterized protein LOC100273856 [Zea mays]
 gi|194705708|gb|ACF86938.1| unknown [Zea mays]
 gi|413956425|gb|AFW89074.1| hypothetical protein ZEAMMB73_742653 [Zea mays]
          Length = 635

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/545 (35%), Positives = 299/545 (54%), Gaps = 43/545 (7%)

Query: 10  DVFVKNSLIQFYSVCGR-VRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM 68
           DV   N+L+       R +  AR +FD     D  SW+++++ +VR+G+    L ++ +M
Sbjct: 91  DVCSYNTLVAALGRSPRGLASARALFDRMPRRDHFSWSAIVSAHVRHGQPRAALAIYRRM 150

Query: 69  PQR------------------------------------------NDVSWNSILGGLVRF 86
            +                                           + V W+++     +F
Sbjct: 151 LREPGGSGADNEFTASSALAAATAARCARAGRELHCHVVRRGIDADAVVWSALADMYAKF 210

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           G +DDA  VF++MP R +VSW  ++  +   GR  E   LF  M    + PN      +L
Sbjct: 211 GRLDDARSVFDRMPVRDVVSWTAMLDRYFDAGRDGEGFRLFVRMMRSGILPNEFTYAGVL 270

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
            ACA+  +   G  V+  + K          +AL+ MY+K G +  AM+VF      D+ 
Sbjct: 271 RACAEFTSEKLGKQVHGRMAKSRTGDSCFAGSALVHMYSKYGDMGTAMRVFRGMPKPDLV 330

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
           ++T+ I G A NG   EA   F+ + S G  PD ++++ VLSAC+H G V+KG   FHS+
Sbjct: 331 SWTAMISGYAQNGQPDEALHCFDMLLSSGFRPDHVTFVGVLSACAHAGLVDKGLGIFHSI 390

Query: 267 FDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEM 326
            D +GI+   DHYAC++DLL R+GL E AE+ I +MP+KP+  +W +LLG CR+H+N  +
Sbjct: 391 KDKYGIEHTADHYACVIDLLSRSGLFERAEDMINTMPVKPNKFLWASLLGGCRIHKNVRL 450

Query: 327 GQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDG 386
                  L E +  +   Y+ L+NIY      +  E +R+TM  R I + P  S IE+  
Sbjct: 451 AWWAAEALFEIEPENPATYVTLANIYASVGLFDEVENMRRTMELRGITKMPASSWIEVGT 510

Query: 387 VVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEK 446
            VH FL GD+SH + +EIY   +++  K++  GY  +T  V+ D+E+E+K+  IGYHSE+
Sbjct: 511 RVHVFLVGDKSHPQAEEIYALLKKLYVKMREEGYVADTGFVLHDVEDEQKQQDIGYHSER 570

Query: 447 LALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCS 506
           LA+AFG+I T  GS I++ KN+RIC DCH+ +KL+SK+ +R+I +RD   +HHF++GSCS
Sbjct: 571 LAVAFGIIATPKGSPIKVFKNLRICGDCHTTIKLISKIVQREIIVRDSNRFHHFKNGSCS 630

Query: 507 CLEYW 511
           C +YW
Sbjct: 631 CRDYW 635



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 127/285 (44%), Gaps = 12/285 (4%)

Query: 60  EGLKLFDKMPQRNDVSWNSILGGLVRFG-SVDDACRVFNQMPKRSLVSWVVLISGFAQNG 118
           + L L   +P  +  S+N+++  L R    +  A  +F++MP+R   SW  ++S   ++G
Sbjct: 79  DALALLSSLPSTDVCSYNTLVAALGRSPRGLASARALFDRMPRRDHFSWSAIVSAHVRHG 138

Query: 119 RPKEALALFREMQSLDLEP------NSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKL 172
           +P+ ALA++R M     EP      N     S L+A         G  ++ ++ ++ I  
Sbjct: 139 QPRAALAIYRRMLR---EPGGSGADNEFTASSALAAATAARCARAGRELHCHVVRRGIDA 195

Query: 173 DSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMK 232
           D+++ +AL DMYAK G +D A  VF     +DV ++T+ +      G   E F LF  M 
Sbjct: 196 DAVVWSALADMYAKFGRLDDARSVFDRMPVRDVVSWTAMLDRYFDAGRDGEGFRLFVRMM 255

Query: 233 SKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLL 292
             GI P+  +Y  VL AC+     EK     H               + +V +  + G +
Sbjct: 256 RSGILPNEFTYAGVLRACAEFT-SEKLGKQVHGRMAKSRTGDSCFAGSALVHMYSKYGDM 314

Query: 293 EEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIES 337
             A      MP KPD V W  ++     +   +      +ML+ S
Sbjct: 315 GTAMRVFRGMP-KPDLVSWTAMISGYAQNGQPDEALHCFDMLLSS 358


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 213/599 (35%), Positives = 309/599 (51%), Gaps = 90/599 (15%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFD--------------------------- 35
           ++N    DVFV N+LI  Y+ CG + +A  VF+                           
Sbjct: 292 IRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAF 351

Query: 36  --------ESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM----PQRNDVSWNSILGGL 83
                   E+  LDVV+W ++I GY + G   E L LF +M       N V+  S+L   
Sbjct: 352 ELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSAC 411

Query: 84  VRFGSVDDA--------------------------------------CR-------VFNQ 98
              G+                                          CR       +F+ 
Sbjct: 412 ASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDD 471

Query: 99  MP--KRSLVSWVVLISGFAQNGRPKEALALFREM--QSLDLEPNSAILVSLLSACAQLGA 154
           +P  +R++V+W V+I G AQ G   +AL LF EM  +   + PN+  +  +L ACA L A
Sbjct: 472 IPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAA 531

Query: 155 LDYGNWVYSYIQKKCIKLDSILCAA--LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAI 212
           +  G  +++Y+ +      S    A  LIDMY+KCG +D A  VF S   K   ++TS +
Sbjct: 532 IRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMM 591

Query: 213 FGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGI 272
            G  M+G   EA ++F+ M+  G  PD I+++ VL ACSH G V++G  YF SM   +G+
Sbjct: 592 TGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGL 651

Query: 273 KPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGN 332
            P  +HYAC +DLL R+G L++A   +  MPM+P  V+W  LL ACRVH N E+ +   N
Sbjct: 652 TPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALN 711

Query: 333 MLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFL 392
            L+E +  +DG Y L+SNIY    + ++   +R  M+K  IK+ PGCS ++       F 
Sbjct: 712 KLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFF 771

Query: 393 AGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFG 452
            GDRSH  + +IY   E ++ +IK  GY  ET   + D++EEEK  ++  HSEKLALA+G
Sbjct: 772 VGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYG 831

Query: 453 LICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           L+ T PG  IRI KN+R+C DCHSA   +SK+   +I +RD   +HHF++GSCSC  YW
Sbjct: 832 LLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 890



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 109/419 (26%), Positives = 181/419 (43%), Gaps = 99/419 (23%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDL---DVVSWNSMINGYVRNGE 57
           ++  N F  +VF+ N+L+  YS CG + +A  +FDE       DV+SWNS+++ +V++  
Sbjct: 180 LICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSN 239

Query: 58  ILEGLKLFDKM-------------------------------PQRNDVSWNSILGGL--- 83
               L LF KM                               PQ  +V  N+I  G    
Sbjct: 240 AWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPD 299

Query: 84  -----------VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGR------------- 119
                       + G +++A +VFN M  + +VSW  +++G++Q+G              
Sbjct: 300 VFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRK 359

Query: 120 ----------------------PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDY 157
                                   EAL LFR+M      PN   ++S+LSACA LGA   
Sbjct: 360 ENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQ 419

Query: 158 GNWVYSYIQKKCIKL----------DSILCAALIDMYAKCGSIDLAMQVFHSYG--DKDV 205
           G  +++Y  K C+            D ++  ALIDMY+KC S   A  +F      +++V
Sbjct: 420 GTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNV 479

Query: 206 SAYTSAIFGLAMNGHSIEAFELFENMKSK--GISPDSISYIAVLSACSHLGWVEKGFYYF 263
             +T  I G A  G S +A +LF  M S+  G++P++ +   +L AC+HL  +  G    
Sbjct: 480 VTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIH 539

Query: 264 HSMFDVHGIKPELDHYA-CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
             +   H  +      A C++D+  + G ++ A +   SM  K   + W +++    +H
Sbjct: 540 AYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQK-SAISWTSMMTGYGMH 597



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 110/263 (41%), Gaps = 15/263 (5%)

Query: 68  MPQRNDVSWNSILGGLVR----FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEA 123
           +P    +S  S+  G+V      G+ D A  V  ++     V W +LI    + GR   A
Sbjct: 80  LPSEPFISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSA 139

Query: 124 LALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDM 183
           + +   M      P+   L  +L AC +L +   G+  +  I     + +  +C AL+ M
Sbjct: 140 INVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAM 199

Query: 184 YAKCGSIDLAMQVFHSY---GDKDVSAYTSAIFGLAMNGHSIEAFELFENM------KSK 234
           Y++CGS++ A  +F      G  DV ++ S +     + ++  A +LF  M      K  
Sbjct: 200 YSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPT 259

Query: 235 GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEE 294
               D IS + +L AC  L  V +     H     +G  P++     ++D   + GL+E 
Sbjct: 260 NERSDIISIVNILPACGSLKAVPQT-KEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMEN 318

Query: 295 AENFIASMPMKPDNVIWGTLLGA 317
           A      M  K D V W  ++  
Sbjct: 319 AVKVFNMMEFK-DVVSWNAMVAG 340


>gi|346703119|emb|CBX25218.1| hypothetical_protein [Oryza brachyantha]
          Length = 596

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 174/436 (39%), Positives = 281/436 (64%), Gaps = 3/436 (0%)

Query: 79  ILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQ--NGRPKEALALFREMQSL-DL 135
           +L    R G +    RVF+++    L +W  L+S + +  +      L LF  M SL  +
Sbjct: 161 LLDVFTRCGRIASCRRVFDRIACPDLPAWNALLSAYMRCASSAADAILELFSRMISLGTV 220

Query: 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ 195
            PN   LV+++ AC +LGAL +G W ++Y+ K+ + ++ I+  AL++MYA CG +DLA  
Sbjct: 221 RPNEITLVAVIGACGELGALGHGVWAHTYLVKRQLAINRIVTTALVEMYAGCGRLDLAEH 280

Query: 196 VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGW 255
           VF +  D+D   Y + + GLA +GH   A +LF+ M+  G+  D ++ ++VL +C+H   
Sbjct: 281 VFATASDRDTRCYNAMLQGLAAHGHGRAALDLFDRMRGSGVPVDGVTILSVLCSCAHAEL 340

Query: 256 VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
           V++G  YF  M    GI+P ++HY C+VD+L RAG L++AE  I  MP+ P+  I+ +L+
Sbjct: 341 VDEGLEYFDKMEIEFGIEPRIEHYGCVVDMLSRAGRLDDAEKLIHEMPIVPNAAIYRSLI 400

Query: 316 GACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKR 375
            AC +H N E+G+R+   L + D +  G ++L++N+Y    + E A++ RK M+   I +
Sbjct: 401 RACDIHGNLELGERMITELRQHDPDDSGNHVLIANLYARMNRWEEAKKTRKEMKSMGIDK 460

Query: 376 APGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEE 435
           +PG SL++++GV+HEFL GD++H  ++EIY   EEI  ++  +G+   T SV+FD+EEE+
Sbjct: 461 SPGSSLLDMNGVLHEFLVGDKTHPASKEIYTMVEEIEARLSEHGHRSSTTSVLFDVEEED 520

Query: 436 KETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRK 495
           K   + YHSE+LA+ F LI + PG+ IRI+KN+R+C+DCH + KLVS+V+ R+I +RDR 
Sbjct: 521 KADTLTYHSERLAIPFALIASDPGTPIRIIKNLRVCADCHESAKLVSRVYGREIVMRDRT 580

Query: 496 HYHHFEDGSCSCLEYW 511
            +HHF +G CSC ++W
Sbjct: 581 RFHHFREGECSCGDFW 596



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 12/175 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +VK   A +  V  +L++ Y+ CGR+  A  VF  + D D   +N+M+ G   +G     
Sbjct: 250 LVKRQLAINRIVTTALVEMYAGCGRLDLAEHVFATASDRDTRCYNAMLQGLAAHGHGRAA 309

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMP-----KRSLVSWVVLIS 112
           L LFD+M       + V+  S+L        VD+    F++M      +  +  +  ++ 
Sbjct: 310 LDLFDRMRGSGVPVDGVTILSVLCSCAHAELVDEGLEYFDKMEIEFGIEPRIEHYGCVVD 369

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK 167
             ++ GR  +A  L  EM    + PN+AI  SL+ AC   G L+ G  + + +++
Sbjct: 370 MLSRAGRLDDAEKLIHEMP---IVPNAAIYRSLIRACDIHGNLELGERMITELRQ 421



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/264 (21%), Positives = 107/264 (40%), Gaps = 58/264 (21%)

Query: 17  LIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG--LKLFDKM-----P 69
           L+  ++ CGR+   R VFD     D+ +WN++++ Y+R         L+LF +M      
Sbjct: 161 LLDVFTRCGRIASCRRVFDRIACPDLPAWNALLSAYMRCASSAADAILELFSRMISLGTV 220

Query: 70  QRNDVSWNSILGGLVRFGS-----------------------------------VDDACR 94
           + N+++  +++G     G+                                   +D A  
Sbjct: 221 RPNEITLVAVIGACGELGALGHGVWAHTYLVKRQLAINRIVTTALVEMYAGCGRLDLAEH 280

Query: 95  VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA 154
           VF     R    +  ++ G A +G  + AL LF  M+   +  +   ++S+L +CA    
Sbjct: 281 VFATASDRDTRCYNAMLQGLAAHGHGRAALDLFDRMRGSGVPVDGVTILSVLCSCAHAEL 340

Query: 155 LDYGNWVYSYIQKKCI------KLDSILCAALIDMYAKCGSIDLAMQVFHSYG-DKDVSA 207
           +D G     Y  K  I      +++   C  ++DM ++ G +D A ++ H      + + 
Sbjct: 341 VDEG---LEYFDKMEIEFGIEPRIEHYGC--VVDMLSRAGRLDDAEKLIHEMPIVPNAAI 395

Query: 208 YTSAIFGLAMNGHSIEAFELFENM 231
           Y S I    ++G+     EL E M
Sbjct: 396 YRSLIRACDIHGN----LELGERM 415



 Score = 47.0 bits (110), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 6/105 (5%)

Query: 162 YSYIQK-KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGH 220
           +S I +  C  L S   A L+D++ +CG I    +VF      D+ A+ +A+    M   
Sbjct: 142 FSQIPRCSCRLLRSCPRAVLLDVFTRCGRIASCRRVFDRIACPDLPAW-NALLSAYMRCA 200

Query: 221 SIEA---FELFENMKSKG-ISPDSISYIAVLSACSHLGWVEKGFY 261
           S  A    ELF  M S G + P+ I+ +AV+ AC  LG +  G +
Sbjct: 201 SSAADAILELFSRMISLGTVRPNEITLVAVIGACGELGALGHGVW 245


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 194/473 (41%), Positives = 297/473 (62%), Gaps = 11/473 (2%)

Query: 46  NSMINGYVRNG--EILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRS 103
           N++I+ Y ++G  E+   +      P  N +++ S+L G  + G +D A  +F+ +  R 
Sbjct: 317 NALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRD 376

Query: 104 LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYS 163
           +V+W  +I G+AQNG   +AL LFR M     +PN+  L ++LS  + L +LD+G  +++
Sbjct: 377 VVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHA 436

Query: 164 YIQKKCIKLDSI----LCAALIDMYAKCGSIDLAMQVF-HSYGDKDVSAYTSAIFGLAMN 218
                 I+L+ +    +  ALI MY++ GSI  A ++F H    +D   +TS I  LA +
Sbjct: 437 V----AIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQH 492

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDH 278
           G   EA ELFE M    + PD I+Y+ VLSAC+H+G VE+G  YF+ M +VH I+P   H
Sbjct: 493 GLGNEAIELFEKMLRINLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSH 552

Query: 279 YACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338
           YACM+DLLGRAGLLEEA NFI +MP++PD V WG+LL +CRVH+  ++ +     L+  D
Sbjct: 553 YACMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAEKLLLID 612

Query: 339 QNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSH 398
            N+ G Y+ L+N      K E+A +VRK+M+ + +K+  G S +++   VH F   D  H
Sbjct: 613 PNNSGAYLALANTLSACGKWEDAAKVRKSMKDKAVKKEQGFSWVQIKNKVHIFGVEDALH 672

Query: 399 EKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKP 458
            +   IY    +I K+IK  G+  +T SV+ D+E+E KE ++ +HSEKLA+AF LI T  
Sbjct: 673 PQRDAIYCMISKIWKEIKKMGFIPDTNSVLHDLEQEVKEQILRHHSEKLAIAFALINTPK 732

Query: 459 GSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            + +RI+KN+R+C+DCHSA++ +S + +R+I +RD   +HHF+DGSCSC +YW
Sbjct: 733 HTTVRIMKNLRVCNDCHSAIRYISLLVEREIIVRDATRFHHFKDGSCSCQDYW 785



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 100/367 (27%), Positives = 164/367 (44%), Gaps = 47/367 (12%)

Query: 25  GRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLV 84
           GR   AR +      L V   N+++N YV+ G   +  +LFD+MP +   SWN+IL    
Sbjct: 31  GRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAHA 90

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
           + G++D A RVF+++P+   VSW  +I G+   G  K A+  F  M S  + P      +
Sbjct: 91  KAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTN 150

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           +L++CA   ALD G  V+S++ K        +  +L++MYAKCG   +A  VF     KD
Sbjct: 151 VLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKD 210

Query: 205 VSAYTSAIFGLAMNGHSIE-AFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
            S + + I  + M     + A  LF+ M      PD +S+ ++++             Y 
Sbjct: 211 TSTWNTMI-SMHMQFCQFDLALALFDQMTD----PDIVSWNSIITG------------YC 253

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
           H  +D+                      LE     + S  +KPD    G++L AC    +
Sbjct: 254 HQGYDIRA--------------------LETFSFMLKSSSLKPDKFTLGSVLSACANRES 293

Query: 324 AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE 383
            ++G++I   ++ +D +  G    + N  +       A EV    R  +I   P  ++I 
Sbjct: 294 LKLGKQIHAHIVRADVDIAGA---VGNALISMYAKSGAVEV--AHRIVEITGTPSLNVIA 348

Query: 384 ----LDG 386
               LDG
Sbjct: 349 FTSLLDG 355



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 144/351 (41%), Gaps = 73/351 (20%)

Query: 2   VVKNSFAY-DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++K+   Y  VF+ N+L+  Y   G   DA  +FDE       SWN++++ + + G +  
Sbjct: 38  IIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAHAKAGNLDS 97

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
             ++FD++PQ + VSW +                               +I G+   G  
Sbjct: 98  ARRVFDEIPQPDSVSWTT-------------------------------MIVGYNHLGLF 126

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
           K A+  F  M S  + P      ++L++CA   ALD G  V+S++ K        +  +L
Sbjct: 127 KSAVHAFLRMVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSL 186

Query: 181 IDMYAKCG-------------------------------SIDLAMQVFHSYGDKDVSAYT 209
           ++MYAKCG                                 DLA+ +F    D D+ ++ 
Sbjct: 187 LNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWN 246

Query: 210 SAIFGLAMNGHSIEAFELFENM-KSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD 268
           S I G    G+ I A E F  M KS  + PD  +  +VLSAC++   ++ G         
Sbjct: 247 SIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLG-----KQIH 301

Query: 269 VHGIKPELDHYA----CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
            H ++ ++D        ++ +  ++G +E A   +        NVI  T L
Sbjct: 302 AHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSL 352



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 122/289 (42%), Gaps = 75/289 (25%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +  + + +V    SL+  Y   G +  AR +FD     DVV+W +MI GY +NG I + L
Sbjct: 338 ITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDAL 397

Query: 63  KLFDKM----PQRNDVSW-----------------------------------NSILGGL 83
            LF  M    P+ N+ +                                    N+++   
Sbjct: 398 VLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMY 457

Query: 84  VRFGSVDDACRVFNQM-PKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
            R GS+ DA ++FN +   R  ++W  +I   AQ+G   EA+ LF +M  ++L+P+    
Sbjct: 458 SRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITY 517

Query: 143 VSLLSACAQLGALDYGNWVYSYIQK-KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           V +LSAC  +G ++ G   ++ ++    I+  S   A +ID+  + G ++          
Sbjct: 518 VGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLLE---------- 567

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250
                                EA+    NM    I PD +++ ++LS+C
Sbjct: 568 ---------------------EAYNFIRNMP---IEPDVVAWGSLLSSC 592


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/557 (37%), Positives = 315/557 (56%), Gaps = 49/557 (8%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++ N    D F+   LI  YS  G V  AR VFD++    +  WN++       G   E 
Sbjct: 103 ILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEV 162

Query: 62  LKLFDKM---------------------------------------PQRNDVSWNSILGG 82
           L L+ KM                                        +R   S   I+  
Sbjct: 163 LGLYWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTT 222

Query: 83  LV----RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM--QSLDLE 136
           LV    RFG VD A  VFN MP R++VSW  +I+ +A+NG+  EAL  FREM  ++ D  
Sbjct: 223 LVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSS 282

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSIL--CAALIDMYAKCGSIDLAM 194
           PNS  +VS+L ACA L AL+ G  ++ YI ++   LDSIL   +AL+ MY +CG +D+  
Sbjct: 283 PNSVTMVSVLQACASLAALEQGRLIHGYILRR--GLDSILPVISALVTMYGRCGKLDVGQ 340

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
           +VF    D+DV ++ S I    ++G+  +A ++FE M + G SP  +++++VL ACSH G
Sbjct: 341 RVFDRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSVLGACSHEG 400

Query: 255 WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTL 314
            VE+G   F SM+  HGIKP+++HYACMVDLLGRA  L+EA   +  M  +P   +WG+L
Sbjct: 401 LVEEGKRLFESMWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSL 460

Query: 315 LGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIK 374
           LG+CR+H N E+ +R    L   +  + G Y+LL++IY E    +  + V+K +  R ++
Sbjct: 461 LGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQ 520

Query: 375 RAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEE 434
           + PG   +E+   ++ F++ D  +   ++I+ F  ++ + +K  GY  +T+ V++++E E
Sbjct: 521 KLPGRCWMEVRRKMYSFVSMDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETE 580

Query: 435 EKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDR 494
           EKE ++  HSEKLALAFGLI T  G  IRI KN+R+C DCH   K +SK  +++I +RD 
Sbjct: 581 EKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDV 640

Query: 495 KHYHHFEDGSCSCLEYW 511
             +H F++G CSC +YW
Sbjct: 641 NRFHRFKNGVCSCGDYW 657



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 145/317 (45%), Gaps = 12/317 (3%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK----LFDKMPQ 70
           N LIQ     G+++ A  V  +       ++  +I        + +GL+    + D    
Sbjct: 50  NQLIQSLCKEGKLKQALRVLSQESSPSQQTYELLILCCGHRSSLSDGLRVHRHILDNGSD 109

Query: 71  RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM 130
           ++      ++G     GSVD A +VF++  KR++  W  L       G  +E L L+ +M
Sbjct: 110 QDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKM 169

Query: 131 QSLDLEPNSAILVSLLSACA----QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAK 186
             + +E +      +L AC         L  G  +++++ ++       +   L+DMYA+
Sbjct: 170 NRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMYAR 229

Query: 187 CGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM--KSKGISPDSISYI 244
            G +D A  VF+    ++V ++++ I   A NG + EA   F  M  ++K  SP+S++ +
Sbjct: 230 FGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMV 289

Query: 245 AVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPM 304
           +VL AC+ L  +E+G    H      G+   L   + +V + GR G L+  +     M  
Sbjct: 290 SVLQACASLAALEQG-RLIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRVFDRMHD 348

Query: 305 KPDNVIWGTLLGACRVH 321
           + D V W +L+ +  VH
Sbjct: 349 R-DVVSWNSLISSYGVH 364


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/541 (37%), Positives = 313/541 (57%), Gaps = 40/541 (7%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D FV  +LI  YS    +++A  +F E  + D+V+WN+M+ GY ++ +  + LKLF  M 
Sbjct: 451 DSFVSTALIDAYSRNRCMKEAEILF-ERHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMH 509

Query: 70  QRNDVS-------------------------------------WNS--ILGGLVRFGSVD 90
           ++ + S                                     W S  IL   V+ G + 
Sbjct: 510 KQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMS 569

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
            A   F+ +P    V+W  +ISG  +NG  + A  +F +M+ + + P+   + +L  A +
Sbjct: 570 AAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASS 629

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
            L AL+ G  +++   K     D  +  +L+DMYAKCGSID A  +F      +++A+ +
Sbjct: 630 CLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNA 689

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            + GLA +G   E  +LF+ MKS GI PD +++I VLSACSH G V + + +  SM   +
Sbjct: 690 MLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDY 749

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
           GIKPE++HY+C+ D LGRAGL+++AEN I SM M+    ++ TLL ACRV  + E G+R+
Sbjct: 750 GIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRV 809

Query: 331 GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHE 390
              L+E +      Y+LLSN+Y    K +  +  R  M+  K+K+ PG S IE+   +H 
Sbjct: 810 ATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHI 869

Query: 391 FLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALA 450
           F+  DRS+ +T+ IY+  +++++ IK  GY  ET   + D+EEEEKE  + YHSEKLA+A
Sbjct: 870 FVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVA 929

Query: 451 FGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEY 510
           FGL+ T P + IR++KN+R+C DCH+AMK ++KV+ R+I +RD   +H F+DG CSC +Y
Sbjct: 930 FGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDY 989

Query: 511 W 511
           W
Sbjct: 990 W 990



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 94/390 (24%), Positives = 151/390 (38%), Gaps = 72/390 (18%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           M +K      + V NSLI  Y    +   AR VFD   + D++SWNS+I G  +NG  +E
Sbjct: 340 MALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVE 399

Query: 61  GLKLF-------------------------------DKMPQRNDVSWNSILGGLVRFGSV 89
            + LF                                K    + +  N++    V    +
Sbjct: 400 AVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALI 459

Query: 90  DDACR--------VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
           D   R        +  +     LV+W  +++G+ Q+    + L LF  M       +   
Sbjct: 460 DAYSRNRCMKEAEILFERHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFT 519

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           L ++   C  L A++ G  V++Y  K    LD  + + ++DMY KCG +  A   F S  
Sbjct: 520 LATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIP 579

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF- 260
             D  A+T+ I G   NG    AF +F  M+  G+ PD  +   +  A S L  +E+G  
Sbjct: 580 VPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQ 639

Query: 261 --------------YYFHSMFDVHGIKPELDHYACMVD-------------LLGRAGLLE 293
                         +   S+ D++     +D   C+               L+G A   E
Sbjct: 640 IHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGE 699

Query: 294 EAENF-----IASMPMKPDNVIWGTLLGAC 318
             E       + S+ +KPD V +  +L AC
Sbjct: 700 GKETLQLFKQMKSLGIKPDKVTFIGVLSAC 729



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 118/252 (46%), Gaps = 9/252 (3%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D FV  +L+  Y   G+V++ + +F+E    DVV WN M+  Y+  G   E + L     
Sbjct: 179 DEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAF- 237

Query: 70  QRNDVSWNSILGGLVRFGSVDDA----CRVFNQMPKRSLVSWVVL----ISGFAQNGRPK 121
             + ++ N I   L+   S DD+     + F      S VS ++     +S +  +G+  
Sbjct: 238 HSSGLNPNEITLRLLARISGDDSDAGQVKSFANGNDASSVSEIIFRNKGLSEYLHSGQYS 297

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
             L  F +M   D+E +    + +L+   ++ +L  G  V+    K  + L   +  +LI
Sbjct: 298 ALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLI 357

Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
           +MY K      A  VF +  ++D+ ++ S I G+A NG  +EA  LF  +   G+ PD  
Sbjct: 358 NMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQY 417

Query: 242 SYIAVLSACSHL 253
           +  +VL A S L
Sbjct: 418 TMTSVLKAASSL 429



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 89/190 (46%), Gaps = 39/190 (20%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGE----- 57
           +K+ +  D++V + ++  Y  CG +  A++ FD     D V+W +MI+G + NGE     
Sbjct: 544 IKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAF 603

Query: 58  -ILEGLKLFDKMPQRNDVSW---------------------------------NSILGGL 83
            +   ++L   +P    ++                                   S++   
Sbjct: 604 HVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMY 663

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
            + GS+DDA  +F ++   ++ +W  ++ G AQ+G  KE L LF++M+SL ++P+    +
Sbjct: 664 AKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFI 723

Query: 144 SLLSACAQLG 153
            +LSAC+  G
Sbjct: 724 GVLSACSHSG 733



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 75/177 (42%), Gaps = 48/177 (27%)

Query: 12  FVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGE-----ILEGLKLFD 66
           F+ N+LI  YS CG +  AR VFD+  D D+VSWNS++  Y ++ E     I +   LF 
Sbjct: 75  FLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQAFLLFR 134

Query: 67  KMPQRNDVSWNS-------------------------------------ILGGLV----R 85
            +  R DV + S                                     + G LV    +
Sbjct: 135 IL--RQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLK 192

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
           FG V +   +F +MP R +V W +++  + + G  +EA+ L     S  L PN   L
Sbjct: 193 FGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITL 249



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 93/207 (44%), Gaps = 17/207 (8%)

Query: 51  GYVRNGEILEGLKL----------FDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMP 100
           G++RN      L L          F++ P+R  +  N+++    + GS+  A RVF++MP
Sbjct: 44  GFLRNAITSSDLMLGKCTHARILTFEENPERFLI--NNLISMYSKCGSLTYARRVFDKMP 101

Query: 101 KRSLVSWVVLISGFAQNGR-----PKEALALFREMQSLDLEPNSAILVSLLSACAQLGAL 155
            R LVSW  +++ +AQ+        ++A  LFR ++   +  +   L  +L  C   G +
Sbjct: 102 DRDLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYV 161

Query: 156 DYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGL 215
                 + Y  K  +  D  +  AL+++Y K G +     +F     +DV  +   +   
Sbjct: 162 WASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAY 221

Query: 216 AMNGHSIEAFELFENMKSKGISPDSIS 242
              G   EA +L     S G++P+ I+
Sbjct: 222 LEMGFKEEAIDLSSAFHSSGLNPNEIT 248



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 15/147 (10%)

Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSI-----EAFELFENMKSK 234
           LI MY+KCGS+  A +VF    D+D+ ++ S +   A +   +     +AF LF  ++  
Sbjct: 80  LISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQD 139

Query: 235 GISPDSISYIAVLSACSHLG--WVEKGFYYFHSMFDVHGIKPELDHY--ACMVDLLGRAG 290
            +    ++   +L  C H G  W  + F+ +     + G     D +    +V++  + G
Sbjct: 140 VVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDG-----DEFVAGALVNIYLKFG 194

Query: 291 LLEEAENFIASMPMKPDNVIWGTLLGA 317
            ++E +     MP + D V+W  +L A
Sbjct: 195 KVKEGKVLFEEMPYR-DVVLWNLMLKA 220


>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
          Length = 799

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 185/453 (40%), Positives = 294/453 (64%), Gaps = 9/453 (1%)

Query: 47  SMINGYVRNGEILEGLKLFDKM-----PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPK 101
           ++I+ Y + G+     ++FD +     PQ    SWN+I+ G  + G VD A  +F++M  
Sbjct: 279 ALIDMYAKCGDFGHAQQVFDALGRGPRPQ----SWNAIIDGYCKHGHVDVARSLFDEMEV 334

Query: 102 RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161
           R ++++  +++G+  +G+ +EAL LF  M+  DL  ++  +V+LL+ACA LGAL  G  +
Sbjct: 335 RDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRAL 394

Query: 162 YSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHS 221
           ++ I+++ ++ D  L  AL+DMY KCG +D A  VF   G +DV  +T+ I GLA NG  
Sbjct: 395 HACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMG 454

Query: 222 IEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYAC 281
             A E F  M+  G  P+S+SYIAVL+ACSH   + +G  YF  M  ++ I P+++HY C
Sbjct: 455 KAALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGC 514

Query: 282 MVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH 341
           M+DLLGR+GLL+EA + + +MP++P+ VIW ++L ACRVH++ ++ Q     L++ + + 
Sbjct: 515 MIDLLGRSGLLDEAMDLVKTMPIQPNAVIWASILSACRVHKHIDLAQCAAEHLLKLEPDE 574

Query: 342 DGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKT 401
           DG Y+ L NIY+++ + ENA ++R  M +R++K+  G S I + G VH+F+  D+SH + 
Sbjct: 575 DGVYVQLYNIYIDSRQWENASKIRMLMEERQVKKTAGYSSITVAGQVHKFVVSDKSHPRI 634

Query: 402 QEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSV 461
            EI    EEI  ++K+ GY+  T  +  D++EEEKE  +  HSEKLA+AFGLI   P   
Sbjct: 635 LEIIAMLEEISHRLKSLGYSPLTSQITVDVDEEEKEQALLAHSEKLAIAFGLINLAPNLP 694

Query: 462 IRIVKNIRICSDCHSAMKLVSKVFKRKISIRDR 494
           + I KN+R+C DCHSA+KL+S+++ R+I +RDR
Sbjct: 695 VHIRKNLRVCEDCHSAIKLISRLWNREIIVRDR 727



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 149/303 (49%), Gaps = 34/303 (11%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           NS+I+ Y+R G   +  + FD++  ++ V+W  ++ GL + G + D   + +Q P R ++
Sbjct: 146 NSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVI 205

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           SW  LI+ +++  R +EA+  F+ M S  + P+   ++++LSACA+L  L+ G  ++  +
Sbjct: 206 SWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLV 265

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD----------------------- 202
           ++K +     L  ALIDMYAKCG    A QVF + G                        
Sbjct: 266 EEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVA 325

Query: 203 ---------KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL 253
                    +D+  + S + G   +G   EA  LF +M+   +  D+ + + +L+AC+ L
Sbjct: 326 RSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASL 385

Query: 254 GWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGT 313
           G +++G    H+  +   ++ ++     ++D+  + G ++EA      M  K D   W  
Sbjct: 386 GALQQG-RALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRM-GKRDVHTWTA 443

Query: 314 LLG 316
           ++ 
Sbjct: 444 MIA 446



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/265 (21%), Positives = 101/265 (38%), Gaps = 39/265 (14%)

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           A  +F++MP  + +    L +       P     LFR M+   + P+       L  C+ 
Sbjct: 56  ALHLFDRMPPSTFLFDTALRACSRAGSDPHRPFLLFRRMRRAGVRPD-GFTFHFLFKCSS 114

Query: 152 LGALDYGNWVYSYIQKKCIKL-----DSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
             +  +   + + +   C++         +  +LI MY + G    A + F     KD  
Sbjct: 115 SSSRPHSLLLCTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAV 174

Query: 207 AYTSAIFGLAMNG-------------------------------HSIEAFELFENMKSKG 235
           A+T  I GLA  G                                + EA   F+ M S G
Sbjct: 175 AWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHG 234

Query: 236 ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA 295
           I+PD ++ IAVLSAC+ L  +E G    H + +  G+    +    ++D+  + G    A
Sbjct: 235 IAPDEVTVIAVLSACAKLKDLELG-RSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHA 293

Query: 296 ENFIASMPMKPDNVIWGTLL-GACR 319
           +    ++   P    W  ++ G C+
Sbjct: 294 QQVFDALGRGPRPQSWNAIIDGYCK 318



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 16/169 (9%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D+++  +L+  Y  CGRV +A  VF      DV +W +MI G   NG     L+ F +M 
Sbjct: 406 DIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMR 465

Query: 70  ----QRNDVSWNSILGG-----LVRFGSV--DDACRVFNQMPKRSLVSWVVLISGFAQNG 118
               Q N VS+ ++L       L+  G +  D+   ++N  P+  +  +  +I    ++G
Sbjct: 466 CDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQ--IEHYGCMIDLLGRSG 523

Query: 119 RPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK 167
              EA+ L + M    ++PN+ I  S+LSAC     +D       ++ K
Sbjct: 524 LLDEAMDLVKTM---PIQPNAVIWASILSACRVHKHIDLAQCAAEHLLK 569


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/550 (35%), Positives = 318/550 (57%), Gaps = 39/550 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++ ++       ++N+L+  Y  C    DAR VFD+ +  +++SWNSMI  YV+     +
Sbjct: 387 LITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSMIGIYVQCERHDD 446

Query: 61  GLKLFDKMPQR----NDVSWNSILGGLV-------------------------------- 84
            L+LF  M Q+    + V++ +ILG                                   
Sbjct: 447 ALQLFRTMQQQGIQPDRVNFMTILGACTIGSHGRTRKLVHQCVEESGLGGSPLVQTSLVN 506

Query: 85  ---RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G +D A  +  +M ++ + +W VLI+G+A +GR +EAL  ++++Q   +  +   
Sbjct: 507 MYAKAGELDVAEVILQEMDEQQITAWNVLINGYALHGRSREALEAYQKLQLEAIPVDKVT 566

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
            +S+L+AC    +L  G  ++S   +  +  D I+  AL +MY+KCGS++ A ++F S  
Sbjct: 567 FISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMP 626

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
            +   ++   +   A +G S E  +L   M+ +G+  + I++++VLS+CSH G + +G  
Sbjct: 627 IRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQ 686

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           YFHS+    GI+ + +HY C+VDLLGRAG L+EAE +I+ MP++P  V W +LLGACRV 
Sbjct: 687 YFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPLEPGIVTWASLLGACRVQ 746

Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
           ++ + G+     L+E D  +    ++LSNIY E    +NA ++R+ M  R++K+ PG S 
Sbjct: 747 KDLDRGKLAAGKLLELDPGNSSASVVLSNIYSERGDWKNAAKLRRAMASRRVKKVPGISS 806

Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIG 441
           I++   VHEF   D SH +  EIY   EE+   ++  GY  +T+ V+ D++EE+KE+++ 
Sbjct: 807 IQVKNKVHEFRVRDTSHPRAAEIYDKVEELCFAMREAGYVPDTKMVLHDVDEEQKESLLA 866

Query: 442 YHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
           YHSEKLA+AFGLI T   S + I KN+R+C DCH+A K +SK+  R+I +RD   +HHF 
Sbjct: 867 YHSEKLAIAFGLISTPETSSLHIFKNLRVCEDCHTATKFISKITGREIVVRDNHRFHHFR 926

Query: 502 DGSCSCLEYW 511
           DGSCSC +YW
Sbjct: 927 DGSCSCKDYW 936



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 168/363 (46%), Gaps = 41/363 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           + + SF  D+FV  +LI  Y+ C    DA  VF      ++++W+++I  +  +G   E 
Sbjct: 287 ISETSFELDLFVGTALITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEA 346

Query: 62  LKLFDKMPQR----NDVSWNSILGGLV--------------------------------- 84
           L+ F  M Q     N V++ S+L G                                   
Sbjct: 347 LRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMRNALVNV 406

Query: 85  --RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             R  S DDA  VF+Q+   +L+SW  +I  + Q  R  +AL LFR MQ   ++P+    
Sbjct: 407 YGRCESPDDARTVFDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNF 466

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           +++L AC           V+  +++  +    ++  +L++MYAK G +D+A  +     +
Sbjct: 467 MTILGACTIGSHGRTRKLVHQCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEMDE 526

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           + ++A+   I G A++G S EA E ++ ++ + I  D +++I+VL+AC+    + +G   
Sbjct: 527 QQITAWNVLINGYALHGRSREALEAYQKLQLEAIPVDKVTFISVLNACTSSTSLAEG-KM 585

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
            HS     G+  ++     + ++  + G +E A     SMP++   V W  +L A   H 
Sbjct: 586 IHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIR-SAVSWNGMLQAYAQHG 644

Query: 323 NAE 325
            +E
Sbjct: 645 ESE 647



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 168/367 (45%), Gaps = 45/367 (12%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNG---- 56
           + ++  F  +  V  +L+  Y  CG + DA+ VF+E  + +VV+WN+M+  Y   G    
Sbjct: 83  LSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMAEKNVVTWNAMLGVYSLQGCCWK 142

Query: 57  --------EILEGLK------------LFDKMPQRN---------------DVSWNSIL- 80
                    +LEG+K            + D    R                DV  N+ L 
Sbjct: 143 LAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALV 202

Query: 81  GGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
               + GS+ DA +VF+ MP RS+ +W  +IS ++ + R  EA  +F+ MQ      +  
Sbjct: 203 NTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQQEGERCDRV 262

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
             +S+L AC     L +G  V   I +   +LD  +  ALI MYA+C S + A QVF   
Sbjct: 263 TFLSILDACVNPETLQHGKHVRESISETSFELDLFVGTALITMYARCRSPEDAAQVFGRM 322

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
              ++  +++ I   A +GH  EA   F  M+ +GI P+ +++I++L+  +    +E+  
Sbjct: 323 KQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEE-L 381

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLG---A 317
              H +   HG+         +V++ GR    ++A      + + P+ + W +++G    
Sbjct: 382 SRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLEL-PNLISWNSMIGIYVQ 440

Query: 318 CRVHRNA 324
           C  H +A
Sbjct: 441 CERHDDA 447



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 152/341 (44%), Gaps = 48/341 (14%)

Query: 20  FYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM------PQ--- 70
            YS CG + DA   F +    +VVSWN MI+ Y       E L LF  M      P    
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAIT 60

Query: 71  ------------------------------RNDVSWNSILGGLVRFGSVDDACRVFNQMP 100
                                         +N +   ++L    + G++ DA  VF +M 
Sbjct: 61  LVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMA 120

Query: 101 KRSLVSWVVLISGFAQNGRP-KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGN 159
           ++++V+W  ++  ++  G   K A+ LF  M    ++ N    +++L++     AL  G 
Sbjct: 121 EKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGK 180

Query: 160 WVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNG 219
           +++S +++    LD  +  AL++ Y KCGS+  A +VF     + V  + S I   +++ 
Sbjct: 181 FIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISE 240

Query: 220 HSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHY 279
            S EAF +F+ M+ +G   D ++++++L AC +   ++ G +   S+ +      ELD +
Sbjct: 241 RSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISET---SFELDLF 297

Query: 280 --ACMVDLLGRAGLLEEAENFIASMPMKPDNVI-WGTLLGA 317
               ++ +  R    E+A        MK  N+I W  ++ A
Sbjct: 298 VGTALITMYARCRSPEDAAQVFGR--MKQTNLITWSAIITA 336


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 213/599 (35%), Positives = 309/599 (51%), Gaps = 90/599 (15%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFD--------------------------- 35
           ++N    DVFV N+LI  Y+ CG + +A  VF+                           
Sbjct: 299 IRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAF 358

Query: 36  --------ESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM----PQRNDVSWNSILGGL 83
                   E+  LDVV+W ++I GY + G   E L LF +M       N V+  S+L   
Sbjct: 359 ELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSAC 418

Query: 84  VRFGSVDDA--------------------------------------CR-------VFNQ 98
              G+                                          CR       +F+ 
Sbjct: 419 ASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDD 478

Query: 99  MP--KRSLVSWVVLISGFAQNGRPKEALALFREM--QSLDLEPNSAILVSLLSACAQLGA 154
           +P  +R++V+W V+I G AQ G   +AL LF EM  +   + PN+  +  +L ACA L A
Sbjct: 479 IPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAA 538

Query: 155 LDYGNWVYSYIQKKCIKLDSILCAA--LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAI 212
           +  G  +++Y+ +      S    A  LIDMY+KCG +D A  VF S   K   ++TS +
Sbjct: 539 IRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMM 598

Query: 213 FGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGI 272
            G  M+G   EA ++F+ M+  G  PD I+++ VL ACSH G V++G  YF SM   +G+
Sbjct: 599 TGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGL 658

Query: 273 KPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGN 332
            P  +HYAC +DLL R+G L++A   +  MPM+P  V+W  LL ACRVH N E+ +   N
Sbjct: 659 TPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALN 718

Query: 333 MLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFL 392
            L+E +  +DG Y L+SNIY    + ++   +R  M+K  IK+ PGCS ++       F 
Sbjct: 719 KLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFF 778

Query: 393 AGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFG 452
            GDRSH  + +IY   E ++ +IK  GY  ET   + D++EEEK  ++  HSEKLALA+G
Sbjct: 779 VGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYG 838

Query: 453 LICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           L+ T PG  IRI KN+R+C DCHSA   +SK+   +I +RD   +HHF++GSCSC  YW
Sbjct: 839 LLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 897



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 109/419 (26%), Positives = 181/419 (43%), Gaps = 99/419 (23%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDL---DVVSWNSMINGYVRNGE 57
           ++  N F  +VF+ N+L+  YS CG + +A  +FDE       DV+SWNS+++ +V++  
Sbjct: 187 LICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSN 246

Query: 58  ILEGLKLFDKM-------------------------------PQRNDVSWNSILGGL--- 83
               L LF KM                               PQ  +V  N+I  G    
Sbjct: 247 AWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPD 306

Query: 84  -----------VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGR------------- 119
                       + G +++A +VFN M  + +VSW  +++G++Q+G              
Sbjct: 307 VFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRK 366

Query: 120 ----------------------PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDY 157
                                   EAL LFR+M      PN   ++S+LSACA LGA   
Sbjct: 367 ENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQ 426

Query: 158 GNWVYSYIQKKCIKL----------DSILCAALIDMYAKCGSIDLAMQVFHSYG--DKDV 205
           G  +++Y  K C+            D ++  ALIDMY+KC S   A  +F      +++V
Sbjct: 427 GTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNV 486

Query: 206 SAYTSAIFGLAMNGHSIEAFELFENMKSK--GISPDSISYIAVLSACSHLGWVEKGFYYF 263
             +T  I G A  G S +A +LF  M S+  G++P++ +   +L AC+HL  +  G    
Sbjct: 487 VTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIH 546

Query: 264 HSMFDVHGIKPELDHYA-CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
             +   H  +      A C++D+  + G ++ A +   SM  K   + W +++    +H
Sbjct: 547 AYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQK-SAISWTSMMTGYGMH 604



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 110/263 (41%), Gaps = 15/263 (5%)

Query: 68  MPQRNDVSWNSILGGLVR----FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEA 123
           +P    +S  S+  G+V      G+ D A  V  ++     V W +LI    + GR   A
Sbjct: 87  LPSEPFISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSA 146

Query: 124 LALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDM 183
           + +   M      P+   L  +L AC +L +   G+  +  I     + +  +C AL+ M
Sbjct: 147 INVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAM 206

Query: 184 YAKCGSIDLAMQVFHSY---GDKDVSAYTSAIFGLAMNGHSIEAFELFENM------KSK 234
           Y++CGS++ A  +F      G  DV ++ S +     + ++  A +LF  M      K  
Sbjct: 207 YSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPT 266

Query: 235 GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEE 294
               D IS + +L AC  L  V +     H     +G  P++     ++D   + GL+E 
Sbjct: 267 NERSDIISIVNILPACGSLKAVPQT-KEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMEN 325

Query: 295 AENFIASMPMKPDNVIWGTLLGA 317
           A      M  K D V W  ++  
Sbjct: 326 AVKVFNMMEFK-DVVSWNAMVAG 347


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/547 (37%), Positives = 314/547 (57%), Gaps = 48/547 (8%)

Query: 13  VKNSLIQFYSVC---GRVRDARWVFDESDDLDVVSWNSMINGYVRNGEI-LEGLKLFDKM 68
           V+ SL+  Y+ C   G V D R VFD  +D  V+SW ++I GY++N  +  E + LF +M
Sbjct: 304 VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEM 363

Query: 69  PQR----------------------------------------NDVSWNSILGGLVRFGS 88
             +                                        N    NS++   V+   
Sbjct: 364 ITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDR 423

Query: 89  VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148
           ++DA R F  + +++LVS+   + G  +N   ++A  L  E+   +L  ++    SLLS 
Sbjct: 424 MEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSG 483

Query: 149 CAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAY 208
            A +G++  G  ++S + K  +  +  +C ALI MY+KCGSID A +VF+   +++V ++
Sbjct: 484 VANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISW 543

Query: 209 TSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD 268
           TS I G A +G +I   E F  M  +G+ P+ ++Y+A+LSACSH+G V +G+ +F+SM++
Sbjct: 544 TSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYE 603

Query: 269 VHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQ 328
            H IKP+++HYACMVDLL RAGLL +A  FI +MP + D ++W T LGACRVH N E+G+
Sbjct: 604 DHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGK 663

Query: 329 RIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVV 388
                ++E D N    YI LSNIY    K E + E+R+ M++R + +  GCS IE+   +
Sbjct: 664 LAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKI 723

Query: 389 HEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKET----VIGYHS 444
           H+F  GD +H    +IY   + ++ +IK  GY  +T  V+  +EEE  E     ++  HS
Sbjct: 724 HKFYVGDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHS 783

Query: 445 EKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGS 504
           EK+A+AFGLI T     +R+ KN+R+C DCH+AMK +S V  R+I +RD   +HHF+DG 
Sbjct: 784 EKIAVAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGK 843

Query: 505 CSCLEYW 511
           CSC +YW
Sbjct: 844 CSCNDYW 850



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 98/360 (27%), Positives = 167/360 (46%), Gaps = 54/360 (15%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDL---DVVSWNSMINGYVRNGEILEGLKLFD 66
           D  + NSLI  YS  G    A  VF+        DVVSW++M+  Y  NG  L+ +K+F 
Sbjct: 96  DSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFV 155

Query: 67  KMPQ----RNDVSWNSI----------------LGGLVRFG------------------- 87
           +  +     ND  + ++                LG L++ G                   
Sbjct: 156 EFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKG 215

Query: 88  --SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
             S ++A +VF++M + ++V+W ++I+   Q G P+EA+  F +M     E +   L S+
Sbjct: 216 ENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSV 275

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC---GSIDLAMQVFHSYGD 202
            SACA+L  L  G  ++S+  +  + +D + C +L+DMYAKC   GS+D   +VF    D
Sbjct: 276 FSACAELENLSLGKQLHSWAIRSGL-VDDVEC-SLVDMYAKCSADGSVDDCRKVFDRMED 333

Query: 203 KDVSAYTSAIFGLAMNGH-SIEAFELFENMKSKG-ISPDSISYIAVLSACSHLGWVEKGF 260
             V ++T+ I G   N + + EA  LF  M ++G + P+  ++ +   AC +L     G 
Sbjct: 334 HSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGK 393

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL-GACR 319
                 F   G+         ++ +  ++  +E+A+    S+  K + V + T L G CR
Sbjct: 394 QVLGQAFK-RGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEK-NLVSYNTFLDGTCR 451



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 108/237 (45%), Gaps = 42/237 (17%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           K   A +  V NS+I  +    R+ DA+  F+   + ++VS+N+ ++G  RN    +  K
Sbjct: 401 KRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFK 460

Query: 64  LFDKMPQR----NDVSWNSILGGLV----------------------------------- 84
           L  ++ +R    +  ++ S+L G+                                    
Sbjct: 461 LLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYS 520

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
           + GS+D A RVFN M  R+++SW  +I+GFA++G     L  F +M    ++PN    V+
Sbjct: 521 KCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVA 580

Query: 145 LLSACAQLGALDYGNWVY--SYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
           +LSAC+ +G +  G W +  S  +   IK      A ++D+  + G +  A +  ++
Sbjct: 581 ILSACSHVGLVSEG-WRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINT 636



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 102/225 (45%), Gaps = 13/225 (5%)

Query: 40  LDVVSWNSMINGYVRNGEILEG------LKLFDKMPQRNDVSWNSILGGLVRFGSVDDAC 93
           +D V+++S++   +R  +   G      L  FD  P  + V +NS++    + G    A 
Sbjct: 60  MDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEP--DSVLYNSLISLYSKSGDSAKAE 117

Query: 94  RVFNQMP---KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
            VF  M    KR +VSW  +++ +  NGR  +A+ +F E   L L PN     +++ AC+
Sbjct: 118 DVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACS 177

Query: 151 QLGALDYGNWVYSYIQKKC-IKLDSILCAALIDMYAKC-GSIDLAMQVFHSYGDKDVSAY 208
               +  G     ++ K    + D  +  +LIDM+ K   S + A +VF    + +V  +
Sbjct: 178 NSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTW 237

Query: 209 TSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL 253
           T  I      G   EA   F +M   G   D  +  +V SAC+ L
Sbjct: 238 TLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAEL 282



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 93/199 (46%), Gaps = 19/199 (9%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VVK   + +  V N+LI  YS CG +  A  VF+  ++ +V+SW SMI G+ ++G  +  
Sbjct: 500 VVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRV 559

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQM-----PKRSLVSWVVLIS 112
           L+ F++M +     N+V++ +IL      G V +  R FN M      K  +  +  ++ 
Sbjct: 560 LETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVD 619

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKL 172
              + G   +A   F  + ++  + +  +  + L AC      + G        +K ++L
Sbjct: 620 LLCRAGLLTDA---FEFINTMPFQADVLVWRTFLGACRVHSNTELGKLA----ARKILEL 672

Query: 173 DSILCAALI---DMYAKCG 188
           D    AA I   ++YA  G
Sbjct: 673 DPNEPAAYIQLSNIYACAG 691



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 99/238 (41%), Gaps = 38/238 (15%)

Query: 138 NSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVF 197
           +S    SLL +C +      G  V++ + +  I+ DS+L  +LI +Y+K G    A  VF
Sbjct: 61  DSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVF 120

Query: 198 HS---YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSH-- 252
            +   +G +DV ++++ +     NG  ++A ++F      G+ P+   Y AV+ ACS+  
Sbjct: 121 ETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSD 180

Query: 253 ---LGWVEKGFYY-------------------------FHSMFDVHGIKPELD--HYACM 282
              +G V  GF                           F + + V     EL+   +  M
Sbjct: 181 FVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLM 240

Query: 283 VDLLGRAGLLEEAENFIASMPM---KPDNVIWGTLLGACRVHRNAEMGQRIGNMLIES 337
           +    + G   EA  F   M +   + D     ++  AC    N  +G+++ +  I S
Sbjct: 241 ITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRS 298


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/558 (35%), Positives = 318/558 (56%), Gaps = 52/558 (9%)

Query: 6   SFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLF 65
           S   + FV ++L+  Y  C +V   R VFD   D  +  WN+MI GY +N    E L LF
Sbjct: 333 SLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLF 392

Query: 66  DKMPQ----------------------------------------RNDVSWNSILGGLVR 85
             M +                                        R+    N+++    R
Sbjct: 393 IGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSR 452

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD----------- 134
            G +D A R+F +M  R LV+W  +I+G+  +   ++AL L  +MQ+L+           
Sbjct: 453 LGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVS 512

Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
           L+PNS  L+++L +CA L AL  G  +++Y  K  +  D  + +AL+DMYAKCG + ++ 
Sbjct: 513 LKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSR 572

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
           +VF     K+V  +   I    M+G+  EA +L   M  +G+ P+ +++I+V +ACSH G
Sbjct: 573 KVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSG 632

Query: 255 WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNV-IWGT 313
            V++G   F+ M   +G++P  DHYAC+VDLLGRAG ++EA   +  MP   +    W +
Sbjct: 633 MVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSS 692

Query: 314 LLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKI 373
           LLGA R+H N E+G+     LI+ + N    Y+LL+NIY      + A EVR+ M+++ +
Sbjct: 693 LLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGV 752

Query: 374 KRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEE 433
           ++ PGCS IE    VH+F+AGD SH +++++  + E + ++++  GY  +T  V+ ++EE
Sbjct: 753 RKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEE 812

Query: 434 EEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRD 493
           +EKE ++  HSEKLA+AFG++ T PG++IR+ KN+R+C+DCH A K +SK+  R+I +RD
Sbjct: 813 DEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRD 872

Query: 494 RKHYHHFEDGSCSCLEYW 511
            + +H F++G+CSC +YW
Sbjct: 873 VRRFHRFKNGTCSCGDYW 890



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 173/367 (47%), Gaps = 56/367 (15%)

Query: 12  FVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP-- 69
           F+ N+L+  Y   G++  ++ +       D+V+WN++++   +N ++LE L+   +M   
Sbjct: 237 FIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLE 296

Query: 70  --QRNDVSWNSILGG-----LVRFGS----------------------VDDAC------- 93
             + ++ + +S+L       ++R G                       VD  C       
Sbjct: 297 GVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLS 356

Query: 94  --RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQ-SLDLEPNSAILVSLLSACA 150
             RVF+ M  R +  W  +I+G++QN   KEAL LF  M+ S  L  NS  +  ++ AC 
Sbjct: 357 GRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACV 416

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
           + GA      ++ ++ K+ +  D  +   L+DMY++ G ID+AM++F    D+D+  + +
Sbjct: 417 RSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNT 476

Query: 211 AIFGLAMNGHSIEAFELFENMK------SKGIS-----PDSISYIAVLSACSHLGWVEKG 259
            I G   + H  +A  L   M+      SKG S     P+SI+ + +L +C+ L  + KG
Sbjct: 477 MITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKG 536

Query: 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVI-WGTLLGAC 318
               H+    + +  ++   + +VD+  + G L+ +      +P K  NVI W  ++ A 
Sbjct: 537 -KEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQK--NVITWNVIIMAY 593

Query: 319 RVHRNAE 325
            +H N +
Sbjct: 594 GMHGNGQ 600



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 105/221 (47%), Gaps = 35/221 (15%)

Query: 42  VVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPK 101
           V   N+++N Y + G+     K+FD++ +RN VSWNS++  L  F               
Sbjct: 133 VTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFE-------------- 178

Query: 102 RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG---ALDYG 158
                W             + AL  FR M   ++EP+S  LVS+++AC+ L     L  G
Sbjct: 179 ----KW-------------EMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMG 221

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
             V++Y  +K  +L+S +   L+ MY K G +  +  +  S+G +D+  + + +  L  N
Sbjct: 222 KQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQN 280

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
              +EA E    M  +G+ PD  +  +VL ACSHL  +  G
Sbjct: 281 EQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTG 321



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 115/249 (46%), Gaps = 53/249 (21%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VVK     D FV+N+L+  YS  G++  A  +F + +D D+V+WN+MI GYV +    + 
Sbjct: 431 VVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDA 490

Query: 62  LKLFDKMPQ---------------------------------------------RNDVSW 76
           L L  KM                                               +N+++ 
Sbjct: 491 LLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLAT 550

Query: 77  NSILGGLV-----RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQ 131
           +  +G  +     + G +  + +VF+Q+P++++++W V+I  +  +G  +EA+ L R M 
Sbjct: 551 DVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMM 610

Query: 132 SLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKK--CIKLDSILCAALIDMYAKCGS 189
              ++PN    +S+ +AC+  G +D G  ++ Y+ K    ++  S   A ++D+  + G 
Sbjct: 611 VQGVKPNEVTFISVFAACSHSGMVDEGLRIF-YVMKPDYGVEPSSDHYACVVDLLGRAGR 669

Query: 190 IDLAMQVFH 198
           I  A Q+ +
Sbjct: 670 IKEAYQLMN 678



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 116/239 (48%), Gaps = 6/239 (2%)

Query: 102 RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161
           RS   W+ L+    ++   +EA+  + +M  L ++P++    +LL A A L  ++ G  +
Sbjct: 60  RSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQI 119

Query: 162 YSYIQKKCIKLDSILCA-ALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGH 220
           ++++ K    +DS+  A  L+++Y KCG      +VF    +++  ++ S I  L     
Sbjct: 120 HAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEK 179

Query: 221 SIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA 280
              A E F  M  + + P S + ++V++ACS+L   E G      +      K EL+ + 
Sbjct: 180 WEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPE-GLMMGKQVHAYGLRKGELNSFI 238

Query: 281 --CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA-CRVHRNAEMGQRIGNMLIE 336
              +V + G+ G L  ++  + S   + D V W T+L + C+  +  E  + +  M++E
Sbjct: 239 INTLVAMYGKLGKLASSKVLLGSFGGR-DLVTWNTVLSSLCQNEQLLEALEYLREMVLE 296


>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 579

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 213/533 (39%), Positives = 299/533 (56%), Gaps = 38/533 (7%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVR---NGEILEGLKLFDK 67
           +F+ N LI  Y     + DA  +FD+    +V+SW +MI+ Y +   + + LE L L  +
Sbjct: 48  MFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLR 107

Query: 68  MPQRNDV-SWNSILGG--------------------------------LVRFGSVDDACR 94
              R +V +++S+L                                    + G  +DA  
Sbjct: 108 DGVRPNVYTYSSVLRACNGMSDVRMLHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALS 167

Query: 95  VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA 154
           VF++M     + W  +I GFAQN R   AL LF+ M+        A L S+L AC  L  
Sbjct: 168 VFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLAL 227

Query: 155 LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFG 214
           L+ G   + +I K     D IL  AL+DMY KCGS++ A +VF+   ++DV  +++ I G
Sbjct: 228 LELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDARRVFNQMKERDVITWSTMISG 285

Query: 215 LAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP 274
           LA NG+S EA +LFE MKS G  P+ I+ + VL ACSH G +E G+YYF SM  ++GI P
Sbjct: 286 LAQNGYSQEALKLFELMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGINP 345

Query: 275 ELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNML 334
             +HY CM+DLLG+AG L++A   +  M  +PD V W TLLGACRV RN  + +     +
Sbjct: 346 GREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKV 405

Query: 335 IESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAG 394
           I  D    G Y +LSNIY  + K ++ EE+RK MR   IK+ PGCS IE++  +H F+ G
Sbjct: 406 IALDPEDAGTYTVLSNIYANSQKWDSVEEIRKRMRDIGIKKEPGCSWIEVNKQIHAFIIG 465

Query: 395 DRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLI 454
           D SH +  E+ +   +++ ++   GY  ET  V+ D+E E+ E  + +HSEKLALAFGL+
Sbjct: 466 DESHPQIVEVNKKLNQLIHRLIGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLM 525

Query: 455 CTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSC 507
                 VIRI KN+RIC DCH   KL SK+  R I IRD   YHHF+DG CSC
Sbjct: 526 TLPSEKVIRIRKNLRICGDCHVFCKLASKLENRNIVIRDPIRYHHFQDGKCSC 578



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 114/236 (48%), Gaps = 40/236 (16%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K     DV+V+++LI  ++  G   DA  VFDE    D + WNS+I G+ +N      
Sbjct: 137 IIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVA 196

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRF----------------------------------- 86
           L+LF +M +   ++  + L  ++R                                    
Sbjct: 197 LELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLILNNALVDMYC 256

Query: 87  --GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
             GS++DA RVFNQM +R +++W  +ISG AQNG  +EAL LF  M+S   +PN   +V 
Sbjct: 257 KCGSLEDARRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFELMKSSGTKPNYITIVG 316

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSIL--CAALIDMYAKCGSIDLAMQVFH 198
           +L AC+  G L+ G W Y    KK   ++        +ID+  K G +D A+++ +
Sbjct: 317 VLFACSHAGLLEDG-WYYFRSMKKLYGINPGREHYGCMIDLLGKAGKLDDAVKLLN 371



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 86/176 (48%), Gaps = 16/176 (9%)

Query: 7   FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFD 66
           +  D+ + N+L+  Y  CG + DAR VF++  + DV++W++MI+G  +NG   E LKLF+
Sbjct: 241 YDQDLILNNALVDMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFE 300

Query: 67  KM----PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLISGFAQN 117
            M     + N ++   +L      G ++D    F  M K   ++     +  +I    + 
Sbjct: 301 LMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGINPGREHYGCMIDLLGKA 360

Query: 118 GRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD 173
           G+  +A+ L  EM+    EP++    +LL AC     +     +  Y  KK I LD
Sbjct: 361 GKLDDAVKLLNEMEC---EPDAVTWRTLLGAC----RVQRNMVLAEYAAKKVIALD 409



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 86/188 (45%), Gaps = 5/188 (2%)

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
           +QS  L  +SA    L+  C    A+  GN +  ++     +    L   LI+MY K   
Sbjct: 4   LQSHGLWADSATYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKFNL 63

Query: 190 IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
           ++ A Q+F     ++V ++T+ I   +      +A EL   M   G+ P+  +Y +VL A
Sbjct: 64  LNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRA 123

Query: 250 CSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNV 309
           C+ +  V       H      G++ ++   + ++D+  + G  E+A +    M +  D +
Sbjct: 124 CNGMSDVR----MLHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEM-VTGDAI 178

Query: 310 IWGTLLGA 317
           +W +++G 
Sbjct: 179 VWNSIIGG 186


>gi|359489486|ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Vitis vinifera]
          Length = 786

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 214/549 (38%), Positives = 304/549 (55%), Gaps = 67/549 (12%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +V++ F  +VFV ++L+  YS CG + +AR + +  +  D VSWNSMI G VR G   E 
Sbjct: 266 IVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEA 325

Query: 62  LKLFD-----------------------KMPQRNDVSWNSIL------------GGLV-- 84
           L LF                         M  RN +S +S++              LV  
Sbjct: 326 LSLFRIMHLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTGFEAYKLVNNALVDM 385

Query: 85  --RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G  D A  VF +M  + ++SW  L++G   NG  +EAL LF EM+ + + P+  ++
Sbjct: 386 YAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVI 445

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            ++LSACA+L  L++G  V++   K  +     +  +L+ MYAKCG I+ A +VF S   
Sbjct: 446 AAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEI 505

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           +DV  +T+ I G A NG   +                            H G VE G  Y
Sbjct: 506 QDVITWTALIVGYAQNGRGRD----------------------------HAGLVEHGRSY 537

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F SM +V+GIKP  +HYACM+DLLGR+G L EA+  +  M ++PD  +W  LL ACRVH 
Sbjct: 538 FQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHG 597

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           N E+G+R  N L E +  +   Y+LLSN+Y    K E A + R+ M+ R + + PGCS I
Sbjct: 598 NVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVSKEPGCSWI 657

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E+   VH F++ DRSH +T EIY   +EI+  IK  GY  +    + D++EE KE  + Y
Sbjct: 658 EMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFALHDMDEEGKELGLAY 717

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSEKLA+AFGL+   PG+ IRI KN+RIC DCH+AMK VS VF R + +RD   +HHF +
Sbjct: 718 HSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTAMKYVSGVFHRHVILRDSNCFHHFRE 777

Query: 503 GSCSCLEYW 511
           G+CSC +YW
Sbjct: 778 GACSCSDYW 786



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 147/304 (48%), Gaps = 21/304 (6%)

Query: 19  QFYSVCGRVR---DARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVS 75
           +F + CG V    D+ WV               ++   + G + +  KLFD MP R++ S
Sbjct: 30  RFVNSCGTVHSSSDSNWV---------------LSNLSKCGRVDDARKLFDVMPDRDECS 74

Query: 76  WNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDL 135
           WN+++G     G +++A ++F + P RS ++W  LISG+ + G   EAL LF EMQ    
Sbjct: 75  WNTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGE 134

Query: 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ 195
            PN     S+L  C+    L+ G  ++++  K     ++ +   L+DMYAKC  I  A  
Sbjct: 135 RPNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEY 194

Query: 196 VFHSYGDK-DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
           +F    DK +   +T+ + G + NG   +A E F +M+ +GI  +  ++ ++L+AC  + 
Sbjct: 195 LFELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSIS 254

Query: 255 WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTL 314
               G    H      G    +   + +VD+  + G L  A   + +M +  D V W ++
Sbjct: 255 ACGFG-AQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVD-DPVSWNSM 312

Query: 315 LGAC 318
           +  C
Sbjct: 313 IVGC 316



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 155/344 (45%), Gaps = 42/344 (12%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP----Q 70
           N++I  Y+  GR+ +AR +F E+     ++W+S+I+GY R G  +E L+LF +M     +
Sbjct: 76  NTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGER 135

Query: 71  RNDVSWNSIL--------------------------GGLVRFGSVD---------DACRV 95
            N  +W S+L                             V  G VD         +A  +
Sbjct: 136 PNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYL 195

Query: 96  FNQMP-KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA 154
           F   P KR+ V W  +++G++QNG   +A+  FR+M+   +E N     S+L+AC  + A
Sbjct: 196 FELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISA 255

Query: 155 LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFG 214
             +G  V+  I +     +  + +AL+DMY+KCG +  A ++  +    D  ++ S I G
Sbjct: 256 CGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVG 315

Query: 215 LAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP 274
               G   EA  LF  M  + +  D  +Y +VL+ C       +     HS+    G + 
Sbjct: 316 CVRQGLGEEALSLFRIMHLRHMKIDEFTYPSVLN-CFSFVMDMRNAMSVHSLIVKTGFEA 374

Query: 275 ELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
                  +VD+  + G  + A +    M  K D + W +L+  C
Sbjct: 375 YKLVNNALVDMYAKRGYFDYAFDVFEKMTDK-DVISWTSLVTGC 417



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 76/171 (44%), Gaps = 39/171 (22%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++VK  F     V N+L+  Y+  G    A  VF++  D DV+SW S++ G V NG   E
Sbjct: 366 LIVKTGFEAYKLVNNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEE 425

Query: 61  GLKLFDKM------PQRNDVSW---------------------------------NSILG 81
            L+LF +M      P +  ++                                  NS++ 
Sbjct: 426 ALRLFCEMRIMGIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVS 485

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQS 132
              + G ++DA +VF+ M  + +++W  LI G+AQNGR ++   L    +S
Sbjct: 486 MYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQNGRGRDHAGLVEHGRS 536


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/558 (35%), Positives = 318/558 (56%), Gaps = 52/558 (9%)

Query: 6   SFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLF 65
           S   + FV ++L+  Y  C +V   R VFD   D  +  WN+MI GY +N    E L LF
Sbjct: 246 SLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLF 305

Query: 66  DKMPQ----------------------------------------RNDVSWNSILGGLVR 85
             M +                                        R+    N+++    R
Sbjct: 306 IGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSR 365

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD----------- 134
            G +D A R+F +M  R LV+W  +I+G+  +   ++AL L  +MQ+L+           
Sbjct: 366 LGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVS 425

Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
           L+PNS  L+++L +CA L AL  G  +++Y  K  +  D  + +AL+DMYAKCG + ++ 
Sbjct: 426 LKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSR 485

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
           +VF     K+V  +   I    M+G+  EA +L   M  +G+ P+ +++I+V +ACSH G
Sbjct: 486 KVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSG 545

Query: 255 WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNV-IWGT 313
            V++G   F+ M   +G++P  DHYAC+VDLLGRAG ++EA   +  MP   +    W +
Sbjct: 546 MVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSS 605

Query: 314 LLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKI 373
           LLGA R+H N E+G+     LI+ + N    Y+LL+NIY      + A EVR+ M+++ +
Sbjct: 606 LLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGV 665

Query: 374 KRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEE 433
           ++ PGCS IE    VH+F+AGD SH +++++  + E + ++++  GY  +T  V+ ++EE
Sbjct: 666 RKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEE 725

Query: 434 EEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRD 493
           +EKE ++  HSEKLA+AFG++ T PG++IR+ KN+R+C+DCH A K +SK+  R+I +RD
Sbjct: 726 DEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRD 785

Query: 494 RKHYHHFEDGSCSCLEYW 511
            + +H F++G+CSC +YW
Sbjct: 786 VRRFHRFKNGTCSCGDYW 803



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 173/367 (47%), Gaps = 56/367 (15%)

Query: 12  FVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP-- 69
           F+ N+L+  Y   G++  ++ +       D+V+WN++++   +N ++LE L+   +M   
Sbjct: 150 FIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLE 209

Query: 70  --QRNDVSWNSILGG-----LVRFGS----------------------VDDAC------- 93
             + ++ + +S+L       ++R G                       VD  C       
Sbjct: 210 GVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLS 269

Query: 94  --RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQ-SLDLEPNSAILVSLLSACA 150
             RVF+ M  R +  W  +I+G++QN   KEAL LF  M+ S  L  NS  +  ++ AC 
Sbjct: 270 GRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACV 329

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
           + GA      ++ ++ K+ +  D  +   L+DMY++ G ID+AM++F    D+D+  + +
Sbjct: 330 RSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNT 389

Query: 211 AIFGLAMNGHSIEAFELFENMK------SKGIS-----PDSISYIAVLSACSHLGWVEKG 259
            I G   + H  +A  L   M+      SKG S     P+SI+ + +L +C+ L  + KG
Sbjct: 390 MITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKG 449

Query: 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVI-WGTLLGAC 318
               H+    + +  ++   + +VD+  + G L+ +      +P K  NVI W  ++ A 
Sbjct: 450 -KEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQK--NVITWNVIIMAY 506

Query: 319 RVHRNAE 325
            +H N +
Sbjct: 507 GMHGNGQ 513



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 105/221 (47%), Gaps = 35/221 (15%)

Query: 42  VVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPK 101
           V   N+++N Y + G+     K+FD++ +RN VSWNS++  L  F               
Sbjct: 46  VTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFE-------------- 91

Query: 102 RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG---ALDYG 158
                W             + AL  FR M   ++EP+S  LVS+++AC+ L     L  G
Sbjct: 92  ----KW-------------EMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMG 134

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
             V++Y  +K  +L+S +   L+ MY K G +  +  +  S+G +D+  + + +  L  N
Sbjct: 135 KQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQN 193

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
              +EA E    M  +G+ PD  +  +VL ACSHL  +  G
Sbjct: 194 EQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTG 234



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 115/249 (46%), Gaps = 53/249 (21%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VVK     D FV+N+L+  YS  G++  A  +F + +D D+V+WN+MI GYV +    + 
Sbjct: 344 VVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDA 403

Query: 62  LKLFDKMPQ---------------------------------------------RNDVSW 76
           L L  KM                                               +N+++ 
Sbjct: 404 LLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLAT 463

Query: 77  NSILGGLV-----RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQ 131
           +  +G  +     + G +  + +VF+Q+P++++++W V+I  +  +G  +EA+ L R M 
Sbjct: 464 DVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMM 523

Query: 132 SLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKK--CIKLDSILCAALIDMYAKCGS 189
              ++PN    +S+ +AC+  G +D G  ++ Y+ K    ++  S   A ++D+  + G 
Sbjct: 524 VQGVKPNEVTFISVFAACSHSGMVDEGLRIF-YVMKPDYGVEPSSDHYACVVDLLGRAGR 582

Query: 190 IDLAMQVFH 198
           I  A Q+ +
Sbjct: 583 IKEAYQLMN 591


>gi|225463123|ref|XP_002265412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Vitis vinifera]
          Length = 573

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 189/436 (43%), Positives = 276/436 (63%), Gaps = 2/436 (0%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136
            +++    + G +D A RVF+++P R + +W  LI+G AQ  +  EALALF  M++   +
Sbjct: 139 TTLIDAYAKCGDLDSAQRVFDEIPLRDVAAWNALIAGLAQGSKSSEALALFNRMRAEGEK 198

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
            N   ++  L+AC+QLGAL  G  V++ ++K  + ++  +C A+IDMYAKCG  D   +V
Sbjct: 199 INEISVLGALAACSQLGALRAGEGVHACVRKMDLDINVQVCNAVIDMYAKCGFADKGFRV 258

Query: 197 FHSYG-DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGW 255
           F +    K V  + + I   AM+G    A ELFE M    +  DS++Y+AVL AC+H G 
Sbjct: 259 FSTMTCGKSVVTWNTMIMAFAMHGDGCRALELFEEMGKTQVEMDSVTYLAVLCACNHAGL 318

Query: 256 VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
           VE+G   F  M    G+   + HY  +VDLLGRAG L EA   I SMP+ PD V+W +LL
Sbjct: 319 VEEGVRLFDEMVG-RGVNRNVKHYGSVVDLLGRAGRLGEAYRIINSMPIVPDVVLWQSLL 377

Query: 316 GACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKR 375
           GAC+ + N EM +     L+E   N  G ++LLSN+Y    + E+   VR+ M+ R +++
Sbjct: 378 GACKTYGNVEMAEMASRKLVEMGSNSCGDFVLLSNVYAARERWEDVGRVREAMKSRDVRK 437

Query: 376 APGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEE 435
            PG S IE++GV+H+F+ GD+SH   +EIY   +EI  +IK +GY  ET  V+ DI EE+
Sbjct: 438 VPGFSYIEVEGVIHKFVNGDQSHPDWREIYAKLDEIRFRIKAFGYVAETSLVLHDIGEED 497

Query: 436 KETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRK 495
           KE  + +HSEKLA+AFGLI T  G+ IR+ KN+RIC DCH  +KL+SK++ ++I +RDR 
Sbjct: 498 KENALCHHSEKLAVAFGLISTSEGTPIRVNKNLRICGDCHVVIKLISKIYDQEIIVRDRA 557

Query: 496 HYHHFEDGSCSCLEYW 511
            +H F+DGSCSC +YW
Sbjct: 558 RFHRFKDGSCSCRDYW 573



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 116/251 (46%), Gaps = 9/251 (3%)

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           A  +   +P  S   +  L+ G A+   P  AL       S  L P++      L A A+
Sbjct: 57  AAHIHRHIPHPSTNDFNALLRGLARGPHPTHALTFL----STILHPDALTFSFSLIASAR 112

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSA 211
             AL   + ++S++ ++    D +L   LID YAKCG +D A +VF     +DV+A+ + 
Sbjct: 113 ALALSETSQIHSHLLRRGCHADILLGTTLIDAYAKCGDLDSAQRVFDEIPLRDVAAWNAL 172

Query: 212 IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG 271
           I GLA    S EA  LF  M+++G   + IS +  L+ACS LG +  G    H+      
Sbjct: 173 IAGLAQGSKSSEALALFNRMRAEGEKINEISVLGALAACSQLGALRAG-EGVHACVRKMD 231

Query: 272 IKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH----RNAEMG 327
           +   +     ++D+  + G  ++     ++M      V W T++ A  +H    R  E+ 
Sbjct: 232 LDINVQVCNAVIDMYAKCGFADKGFRVFSTMTCGKSVVTWNTMIMAFAMHGDGCRALELF 291

Query: 328 QRIGNMLIESD 338
           + +G   +E D
Sbjct: 292 EEMGKTQVEMD 302



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 116/288 (40%), Gaps = 74/288 (25%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D+ +  +LI  Y+ CG +  A+ VFDE    DV +WN++I G  +  +  E L LF++M 
Sbjct: 134 DILLGTTLIDAYAKCGDLDSAQRVFDEIPLRDVAAWNALIAGLAQGSKSSEALALFNRMR 193

Query: 70  QRND-VSWNSILGGL--------------------------------------VRFGSVD 90
              + ++  S+LG L                                       + G  D
Sbjct: 194 AEGEKINEISVLGALAACSQLGALRAGEGVHACVRKMDLDINVQVCNAVIDMYAKCGFAD 253

Query: 91  DACRVFNQMP-KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
              RVF+ M   +S+V+W  +I  FA +G    AL LF EM    +E +S   +++L AC
Sbjct: 254 KGFRVFSTMTCGKSVVTWNTMIMAFAMHGDGCRALELFEEMGKTQVEMDSVTYLAVLCAC 313

Query: 150 AQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYT 209
              G ++ G  ++  +  + +                               +++V  Y 
Sbjct: 314 NHAGLVEEGVRLFDEMVGRGV-------------------------------NRNVKHYG 342

Query: 210 SAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVE 257
           S +  L   G   EA+ +  +M    I PD + + ++L AC   G VE
Sbjct: 343 SVVDLLGRAGRLGEAYRIINSMP---IVPDVVLWQSLLGACKTYGNVE 387


>gi|357139833|ref|XP_003571481.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Brachypodium distachyon]
          Length = 617

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/506 (38%), Positives = 302/506 (59%), Gaps = 2/506 (0%)

Query: 8   AYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDK 67
           A +V   N+++   S  G V +AR VF      + +SWN+M++ +   G++    + F+ 
Sbjct: 112 ARNVTSWNTMLSGLSRSGAVGEARAVFLAMPARNSISWNAMVSCFAHAGDMCAAEECFED 171

Query: 68  MPQR-NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALAL 126
            P + N V W +++ G +  G V+ A + F  MP RSLVSW  +++G+ +N R ++AL +
Sbjct: 172 APDKENAVLWTAMVSGYMDSGHVEKAMQFFEAMPVRSLVSWNAVVAGYVKNSRAEDALWV 231

Query: 127 FREM-QSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYA 185
           F+ M +  D+ PN + L S+L  C+ L AL +G  V+ +  K  +        +L+ MY 
Sbjct: 232 FKTMVRDADVRPNESTLSSVLLGCSNLSALGFGRQVHQWCTKLPLSRRVTAGTSLVSMYC 291

Query: 186 KCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIA 245
           KCG +D A ++F     +DV A+ + I G A +G   EA ELFE MKS+G+ P+ I+++A
Sbjct: 292 KCGDLDGACKLFSEMRIRDVIAWNAMISGYAHHGDGREAIELFEKMKSQGVEPNWITFVA 351

Query: 246 VLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMK 305
           VL+AC H G  + G   F  M +V+GI+  +DHY+CMVDLL RAG LE A + I SMP +
Sbjct: 352 VLTACIHTGMCDFGMQCFERMQEVYGIEARVDHYSCMVDLLCRAGSLERAVSLIRSMPFQ 411

Query: 306 PDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVR 365
           P    +GTLL A RV++N E  +     LIE +  + G Y+ L+NIY    +  +   VR
Sbjct: 412 PHPSAYGTLLNASRVYKNMEFAEFAAGKLIEQNPQNAGAYVQLANIYAVANQWADVSRVR 471

Query: 366 KTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETR 425
           + M+   + + PG S +E++GV+H F + DR H +   I++   ++ +++K  GY  +  
Sbjct: 472 RWMKDNAVVKTPGYSWVEINGVIHVFRSNDRLHPQLSLIHERLCQLEERMKAMGYVPDLD 531

Query: 426 SVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVF 485
             + D++E  K  ++  HSEKLA+AFGL+ T PG  +RI KN+R+C DCH+A KL+SK+ 
Sbjct: 532 FALHDVDESLKVQMLMRHSEKLAIAFGLLSTAPGITLRIFKNLRVCGDCHTAAKLISKIE 591

Query: 486 KRKISIRDRKHYHHFEDGSCSCLEYW 511
            R+I +RD   +HHF  G CSC +YW
Sbjct: 592 DREIILRDTTRFHHFRSGHCSCGDYW 617



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 103/228 (45%), Gaps = 41/228 (17%)

Query: 29  DARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ--RNDVSWNSILGGLVRF 86
           DAR +FD     D VS+N++++ +   G++     LF  MP   RN  SWN++L GL R 
Sbjct: 69  DARHLFDRIPRPDAVSYNTLLSCHFAAGDVRGARDLFAAMPATARNVTSWNTMLSGLSRS 128

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           G+V +A  VF  MP R+ +SW  ++S FA  G    A   F +       P+        
Sbjct: 129 GAVGEARAVFLAMPARNSISWNAMVSCFAHAGDMCAAEECFED------APD-------- 174

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
                                   K +++L  A++  Y   G ++ AMQ F +   + + 
Sbjct: 175 ------------------------KENAVLWTAMVSGYMDSGHVEKAMQFFEAMPVRSLV 210

Query: 207 AYTSAIFGLAMNGHSIEAFELFENM-KSKGISPDSISYIAVLSACSHL 253
           ++ + + G   N  + +A  +F+ M +   + P+  +  +VL  CS+L
Sbjct: 211 SWNAVVAGYVKNSRAEDALWVFKTMVRDADVRPNESTLSSVLLGCSNL 258


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/581 (33%), Positives = 322/581 (55%), Gaps = 70/581 (12%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRV--------------------------RDARWV- 33
           +++ +  + D F+ N L+  YS CG++                          R   WV 
Sbjct: 77  LIITSGCSSDKFISNHLLNLYSKCGQLDTAITLFGVMPRKNIMSCNILINGYFRSGDWVT 136

Query: 34  ----FDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ----RNDVSWNSILGGL-- 83
               FDE  + +V +WN+M+ G ++     EGL LF +M +     ++ +  S+L G   
Sbjct: 137 ARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSRMNELGFLPDEFALGSVLRGCAG 196

Query: 84  ---------------------------------VRFGSVDDACRVFNQMPKRSLVSWVVL 110
                                            ++ GS+ +  R+   MP +++V+W  L
Sbjct: 197 LRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKCGSLGEGERLIRAMPSQNVVAWNTL 256

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCI 170
           I+G AQNG P+E L  +  M+     P+    VS++S+C++L  L  G  +++ + K   
Sbjct: 257 IAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELATLGQGQQIHAEVIKAGA 316

Query: 171 KLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFEN 230
            L   + ++LI MY++CG ++ +++VF    + DV  ++S I     +G  +EA +LF  
Sbjct: 317 SLIVSVISSLISMYSRCGCLEYSLKVFLECENGDVVCWSSMIAAYGFHGRGVEAIDLFNQ 376

Query: 231 MKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAG 290
           M+ + +  + ++++++L ACSH G  EKG  +F  M + +G+KP L+HY CMVDLLGR G
Sbjct: 377 MEQEKLEANDVTFLSLLYACSHCGLKEKGIKFFDLMVEKYGVKPRLEHYTCMVDLLGRYG 436

Query: 291 LLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSN 350
            +EEAE  I SMP+K D + W TLL AC++H+  EM +RI   +   D      Y+LLSN
Sbjct: 437 SVEEAEALIRSMPVKADVITWKTLLSACKIHKKTEMARRISEEVFRLDPRDPVPYVLLSN 496

Query: 351 IYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEE 410
           I+    + ++  +VRK MR RK+K+ PG S +E+   +H+F  GD+SH K+ EI  +  E
Sbjct: 497 IHASDKRWDDVSDVRKAMRDRKLKKEPGISWLEVKNQIHQFCMGDKSHPKSVEIASYLRE 556

Query: 411 IVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRI 470
           +  ++K  GY  +  SV+ D++ E+KE  + +HSEKLA+AF L+ T  G+ IR++KN+R+
Sbjct: 557 LTSEMKKRGYVPDIDSVLHDMDVEDKEYSLVHHSEKLAIAFALLYTPVGTPIRVIKNLRV 616

Query: 471 CSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           CSDCH A+K +S++  R+I +RD   +HHF++G CSC +YW
Sbjct: 617 CSDCHVAIKYISEISNREIIVRDSSRFHHFKNGRCSCGDYW 657



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 83/213 (38%), Gaps = 35/213 (16%)

Query: 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM- 194
           EP  ++   LL +C    +L  G  ++S I       D  +   L+++Y+KCG +D A+ 
Sbjct: 51  EP--SLFSHLLQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAIT 108

Query: 195 ------------------------------QVFHSYGDKDVSAYTSAIFGLAMNGHSIEA 224
                                         ++F    +++V+ + + + GL     + E 
Sbjct: 109 LFGVMPRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEG 168

Query: 225 FELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVD 284
             LF  M   G  PD  +  +VL  C+ L  +  G    H      G +  L   + +  
Sbjct: 169 LGLFSRMNELGFLPDEFALGSVLRGCAGLRALVAG-RQVHGYVRKCGFEFNLVVVSSLAH 227

Query: 285 LLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
           +  + G L E E  I +MP + + V W TL+  
Sbjct: 228 MYMKCGSLGEGERLIRAMPSQ-NVVAWNTLIAG 259


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/558 (35%), Positives = 318/558 (56%), Gaps = 52/558 (9%)

Query: 6   SFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLF 65
           S   + FV ++L+  Y  C +V   R VFD   D  +  WN+MI GY +N    E L LF
Sbjct: 333 SLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLF 392

Query: 66  DKMPQ----------------------------------------RNDVSWNSILGGLVR 85
             M +                                        R+    N+++    R
Sbjct: 393 IGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSR 452

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD----------- 134
            G +D A R+F +M  R LV+W  +I+G+  +   ++AL L  +MQ+L+           
Sbjct: 453 LGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVS 512

Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
           L+PNS  L+++L +CA L AL  G  +++Y  K  +  D  + +AL+DMYAKCG + ++ 
Sbjct: 513 LKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSR 572

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
           +VF     K+V  +   I    M+G+  EA +L   M  +G+ P+ +++I+V +ACSH G
Sbjct: 573 KVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSG 632

Query: 255 WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNV-IWGT 313
            V++G   F+ M   +G++P  DHYAC+VDLLGRAG ++EA   +  MP   +    W +
Sbjct: 633 MVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSS 692

Query: 314 LLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKI 373
           LLGA R+H N E+G+     LI+ + N    Y+LL+NIY      + A EVR+ M+++ +
Sbjct: 693 LLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGV 752

Query: 374 KRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEE 433
           ++ PGCS IE    VH+F+AGD SH +++++  + E + ++++  GY  +T  V+ ++EE
Sbjct: 753 RKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEE 812

Query: 434 EEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRD 493
           +EKE ++  HSEKLA+AFG++ T PG++IR+ KN+R+C+DCH A K +SK+  R+I +RD
Sbjct: 813 DEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRD 872

Query: 494 RKHYHHFEDGSCSCLEYW 511
            + +H F++G+CSC +YW
Sbjct: 873 VRRFHRFKNGTCSCGDYW 890



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 173/367 (47%), Gaps = 56/367 (15%)

Query: 12  FVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP-- 69
           F+ N+L+  Y   G++  ++ +       D+V+WN++++   +N ++LE L+   +M   
Sbjct: 237 FIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLE 296

Query: 70  --QRNDVSWNSILGG-----LVRFGS----------------------VDDAC------- 93
             + ++ + +S+L       ++R G                       VD  C       
Sbjct: 297 GVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLS 356

Query: 94  --RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQ-SLDLEPNSAILVSLLSACA 150
             RVF+ M  R +  W  +I+G++QN   KEAL LF  M+ S  L  NS  +  ++ AC 
Sbjct: 357 GRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACV 416

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
           + GA      ++ ++ K+ +  D  +   L+DMY++ G ID+AM++F    D+D+  + +
Sbjct: 417 RSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNT 476

Query: 211 AIFGLAMNGHSIEAFELFENMK------SKGIS-----PDSISYIAVLSACSHLGWVEKG 259
            I G   + H  +A  L   M+      SKG S     P+SI+ + +L +C+ L  + KG
Sbjct: 477 MITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKG 536

Query: 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVI-WGTLLGAC 318
               H+    + +  ++   + +VD+  + G L+ +      +P K  NVI W  ++ A 
Sbjct: 537 -KEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQK--NVITWNVIIMAY 593

Query: 319 RVHRNAE 325
            +H N +
Sbjct: 594 GMHGNGQ 600



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 105/221 (47%), Gaps = 35/221 (15%)

Query: 42  VVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPK 101
           V   N+++N Y + G+     K+FD++ +RN VSWNS++  L  F               
Sbjct: 133 VTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFE-------------- 178

Query: 102 RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG---ALDYG 158
                W             + AL  FR M   ++EP+S  LVS+++AC+ L     L  G
Sbjct: 179 ----KW-------------EMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMG 221

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
             V++Y  +K  +L+S +   L+ MY K G +  +  +  S+G +D+  + + +  L  N
Sbjct: 222 KQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQN 280

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
              +EA E    M  +G+ PD  +  +VL ACSHL  +  G
Sbjct: 281 EQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTG 321



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 115/249 (46%), Gaps = 53/249 (21%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VVK     D FV+N+L+  YS  G++  A  +F + +D D+V+WN+MI GYV +    + 
Sbjct: 431 VVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDA 490

Query: 62  LKLFDKMPQ---------------------------------------------RNDVSW 76
           L L  KM                                               +N+++ 
Sbjct: 491 LLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLAT 550

Query: 77  NSILGGLV-----RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQ 131
           +  +G  +     + G +  + +VF+Q+P++++++W V+I  +  +G  +EA+ L R M 
Sbjct: 551 DVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMM 610

Query: 132 SLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKK--CIKLDSILCAALIDMYAKCGS 189
              ++PN    +S+ +AC+  G +D G  ++ Y+ K    ++  S   A ++D+  + G 
Sbjct: 611 VQGVKPNEVTFISVFAACSHSGMVDEGLRIF-YVMKPDYGVEPSSDHYACVVDLLGRAGR 669

Query: 190 IDLAMQVFH 198
           I  A Q+ +
Sbjct: 670 IKEAYQLMN 678



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 116/239 (48%), Gaps = 6/239 (2%)

Query: 102 RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161
           RS   W+ L+    ++   +EA+  + +M  L ++P++    +LL A A L  ++ G  +
Sbjct: 60  RSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQI 119

Query: 162 YSYIQKKCIKLDSILCA-ALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGH 220
           ++++ K    +DS+  A  L+++Y KCG      +VF    +++  ++ S I  L     
Sbjct: 120 HAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEK 179

Query: 221 SIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA 280
              A E F  M  + + P S + ++V++ACS+L   E G      +      K EL+ + 
Sbjct: 180 WEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPE-GLMMGKQVHAYGLRKGELNSFI 238

Query: 281 --CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA-CRVHRNAEMGQRIGNMLIE 336
              +V + G+ G L  ++  + S   + D V W T+L + C+  +  E  + +  M++E
Sbjct: 239 INTLVAMYGKLGKLASSKVLLGSFGGR-DLVTWNTVLSSLCQNEQLLEALEYLREMVLE 296


>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 211/557 (37%), Positives = 309/557 (55%), Gaps = 49/557 (8%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +V + F  D F+   LI  Y   G +  AR VFDE+ +  +  WN++       G   E 
Sbjct: 104 LVSSGFDQDPFLATKLINMYYELGSIDRARKVFDETRERTIYVWNALFRALAMVGCGKEL 163

Query: 62  LKLFDKMP-------------------------------------------QRNDVSWNS 78
           L L+ +M                                            + N     +
Sbjct: 164 LDLYVQMNWIGIPSDRFTYTFVLKACVVSELSVSPLQKGKEIHAHILRHGYEANIHVMTT 223

Query: 79  ILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM--QSLDLE 136
           +L    +FGSV  A  VF  MP ++ VSW  +I+ FA+N  P +AL LF+ M  ++ D  
Sbjct: 224 LLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMLEAHDSV 283

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCA--ALIDMYAKCGSIDLAM 194
           PNS  +V++L ACA L AL+ G  ++ YI ++   LDSIL    ALI MY +CG I +  
Sbjct: 284 PNSVTMVNVLQACAGLAALEQGKLIHGYILRR--GLDSILPVLNALITMYGRCGEILMGQ 341

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
           +VF +  ++DV ++ S I    M+G   +A ++FENM  +G SP  IS+I VL ACSH G
Sbjct: 342 RVFDNMKNRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGSSPSYISFITVLGACSHAG 401

Query: 255 WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTL 314
            VE+G   F SM   + I P ++HYACMVDLLGRA  L+EA   I  M  +P   +WG+L
Sbjct: 402 LVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRLDEAIKLIEDMHFEPGPTVWGSL 461

Query: 315 LGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIK 374
           LG+CR+H N E+ +R   +L E +  + G Y+LL++IY E      A+ V K +  R ++
Sbjct: 462 LGSCRIHCNVELAERASTLLFELEPRNAGNYVLLADIYAEAKMWSEAKSVMKLLEARGLQ 521

Query: 375 RAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEE 434
           + PGCS IE+   V+ F++ D  + + +EI+    ++  ++K  GY  +T  V++D++EE
Sbjct: 522 KLPGCSWIEVKRKVYSFVSVDEHNPQIEEIHALLVKLSNEMKAQGYVPQTNVVLYDLDEE 581

Query: 435 EKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDR 494
           EKE ++  HSEKLA+AFGLI T  G  IRI KN+R+C DCH+  K +SK   R+I +RD 
Sbjct: 582 EKERIVLGHSEKLAVAFGLINTVKGETIRIRKNLRLCEDCHAVTKFISKFANREILVRDV 641

Query: 495 KHYHHFEDGSCSCLEYW 511
             +HHF+DG CSC +YW
Sbjct: 642 NRFHHFKDGVCSCGDYW 658



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 116/267 (43%), Gaps = 17/267 (6%)

Query: 58  ILEGLKLFDKMPQRNDVSWNSILGG--LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFA 115
           +L+  ++    P ++ + +NS +     V F S++ +  + N +   +      LI    
Sbjct: 3   VLQIPQIVRHAPSQSHLCYNSHVSSRVPVSFVSLNPSANLMNDIKGNN----NQLIQSLC 58

Query: 116 QNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI 175
           + G  K+A+ L       +  P       L+ +CAQ  +L  G  V+  +       D  
Sbjct: 59  KGGNLKQAIHLL----CCEPNPTQRTFEHLICSCAQQNSLSDGLDVHRRLVSSGFDQDPF 114

Query: 176 LCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG 235
           L   LI+MY + GSID A +VF    ++ +  + +    LAM G   E  +L+  M   G
Sbjct: 115 LATKLINMYYELGSIDRARKVFDETRERTIYVWNALFRALAMVGCGKELLDLYVQMNWIG 174

Query: 236 ISPDSISYIAVLSACS----HLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGL 291
           I  D  +Y  VL AC      +  ++KG    H+    HG +  +     ++D+  + G 
Sbjct: 175 IPSDRFTYTFVLKACVVSELSVSPLQKG-KEIHAHILRHGYEANIHVMTTLLDVYAKFGS 233

Query: 292 LEEAENFIASMPMKPDNVIWGTLLGAC 318
           +  A +   +MP K + V W  ++ AC
Sbjct: 234 VSYANSVFCAMPTK-NFVSWSAMI-AC 258


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/541 (37%), Positives = 314/541 (58%), Gaps = 41/541 (7%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ 70
           V V  +++  Y  CG V  AR VFD     + VSWN+MI+GY  NG   E + LF +M Q
Sbjct: 154 VNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQ 213

Query: 71  RN-DVSWNSILGGL-------------------VRFG-------------------SVDD 91
              DV+  S+L  L                   VR G                     D 
Sbjct: 214 EGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGLSSNVSVTNALITTYAKCKRADL 273

Query: 92  ACRVFNQMP-KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           A +VFN++  K++ +SW  +I GF QN  P++A  LF  MQ  ++ P+S  LVS++ A A
Sbjct: 274 AAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVA 333

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
            +       W++ Y  +  +  D  +  ALIDMY+KCG + +A ++F S  D+ V  + +
Sbjct: 334 DISDPLQARWIHGYSIRHQLDQDVYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNA 393

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I G   +G    A ELFE MK  G  P+  ++++VL+ACSH G V++G  YF SM   +
Sbjct: 394 MIHGYGSHGFGQAAVELFEEMKGTGSLPNETTFLSVLAACSHAGLVDEGQKYFASMKKDY 453

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
           G++P ++HY  MVDLLGRAG L+EA +FI +MP++P   ++G +LGAC++H+N E+ +  
Sbjct: 454 GLEPGMEHYGTMVDLLGRAGKLDEAWSFIKNMPIEPGISVYGAMLGACKLHKNVELAEES 513

Query: 331 GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHE 390
             ++ E        ++LL+NIY      ++   VR  M K+ +++ PG S+I+L   VH 
Sbjct: 514 AQIIFELGPEEGVYHVLLANIYANASMWKDVARVRTAMEKKGLQKTPGWSIIQLKNEVHT 573

Query: 391 FLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALA 450
           F +G  +H+  ++IY    +++++IK+ GY  +T S+  D+E++ K  ++  HSEKLA+A
Sbjct: 574 FYSGSTNHQHAKDIYARLAKLIEEIKDMGYVPDTDSI-HDVEDDVKAQLLNTHSEKLAIA 632

Query: 451 FGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEY 510
           +GLI T PG+ I+I KN+R+C+DCH+A KL+S +  R+I +RD + +HHF+DG CSC +Y
Sbjct: 633 YGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLLTGREIIMRDIQRFHHFKDGKCSCGDY 692

Query: 511 W 511
           W
Sbjct: 693 W 693



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 143/323 (44%), Gaps = 50/323 (15%)

Query: 7   FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRN----------- 55
            A +     +L   Y  C R  DAR VFD     D V+WN+++ GY RN           
Sbjct: 47  LASESIASTALANMYFKCRRPADARRVFDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVV 106

Query: 56  -------GEILEGLKLFDKMPQRNDVSW-----------------------NSILGGLVR 85
                  GE  + + L   +P   D                           ++L    +
Sbjct: 107 RMQGEEGGERPDSVTLVSVLPACADARALHACREVHAFALRAGLDELVNVSTAVLDAYCK 166

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
            G+V+ A  VF+ MP R+ VSW  +I G+A NG   EA+ALF  M    ++   A +++ 
Sbjct: 167 CGAVEAARAVFDCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAA 226

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
           L AC +LG LD    V+  + +  +  +  +  ALI  YAKC   DLA QVF+  G+K  
Sbjct: 227 LQACGELGYLDEVRRVHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKT 286

Query: 206 S-AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG------WVEK 258
             ++ + I G   N    +A  LF  M+ + + PDS + ++V+ A + +       W+  
Sbjct: 287 RISWNAMILGFTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQARWIH- 345

Query: 259 GFYYFHSM-FDVHGIKPELDHYA 280
           G+   H +  DV+ +   +D Y+
Sbjct: 346 GYSIRHQLDQDVYVLTALIDMYS 368



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 84/187 (44%), Gaps = 16/187 (8%)

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
           P      +LL  CA    L  G  V++ ++ + +  +SI   AL +MY KC     A +V
Sbjct: 14  PVLRTFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRV 73

Query: 197 FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK--GISPDSISYIAVLSACSHLG 254
           F     +D  A+ + + G A NG    A E    M+ +  G  PDS++ ++VL AC+   
Sbjct: 74  FDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADA- 132

Query: 255 WVEKGFYYFHSMFDVH------GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDN 308
                    H+  +VH      G+   ++    ++D   + G +E A      MP++ ++
Sbjct: 133 ------RALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVR-NS 185

Query: 309 VIWGTLL 315
           V W  ++
Sbjct: 186 VSWNAMI 192


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 186/510 (36%), Positives = 305/510 (59%), Gaps = 27/510 (5%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K     D FV ++++  Y  CG V++   VFDE +++++ S N+ + G  RNG +   
Sbjct: 266 VIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTA 325

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
           L++F+K                             +Q  + ++V+W  +I+  +QNG+  
Sbjct: 326 LEVFNKFK---------------------------DQKMELNVVTWTSIIASCSQNGKDL 358

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
           EAL LFR+MQ+  +EPN+  + SL+ AC  + AL +G  ++ +  ++ I  D  + +ALI
Sbjct: 359 EALELFRDMQAYGVEPNAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALI 418

Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
           DMYAKCG I LA + F      ++ ++ + + G AM+G + E  E+F  M   G  PD +
Sbjct: 419 DMYAKCGRIQLARRCFDKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLV 478

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
           ++  VLSAC+  G  E+G+  ++SM + HGI+P+++HYAC+V LL R G LEEA + I  
Sbjct: 479 TFTCVLSACAQNGLTEEGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKE 538

Query: 302 MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361
           MP +PD  +WG LL +CRVH N  +G+     L   +  + G YILLSNIY      +  
Sbjct: 539 MPFEPDACVWGALLSSCRVHNNLSLGEIAAEKLFFLEPTNPGNYILLSNIYASKGLWDEE 598

Query: 362 EEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYN 421
             +R+ M+ + +++ PG S IE+   VH  LAGD+SH + ++I +  +++  ++K  GY 
Sbjct: 599 NRIREVMKSKGLRKNPGYSWIEVGHKVHMLLAGDQSHPQMKDILEKLDKLNMQMKKSGYL 658

Query: 422 VETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLV 481
            +T  V+ D+EE++KE ++  HSEKLA+  GL+ T PG  ++++KN+RIC DCH+ +K++
Sbjct: 659 PKTNFVLQDVEEQDKEQILCGHSEKLAVVLGLLNTSPGQPLQVIKNLRICDDCHAVIKVI 718

Query: 482 SKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           S++  R+I +RD   +HHF+DG CSC ++W
Sbjct: 719 SRLEGREIYVRDTNRFHHFKDGVCSCGDFW 748



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 167/341 (48%), Gaps = 41/341 (12%)

Query: 41  DVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMP 100
           D +  +S+ + Y++   IL+  KLFD+MP R+ V W++++ G  R G V++A  +F +M 
Sbjct: 138 DSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGEMR 197

Query: 101 ----KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALD 156
               + +LVSW  +++GF  NG   EA+ +FR M      P+ + +  +L A   L  + 
Sbjct: 198 SGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVV 257

Query: 157 YGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS--------------------------- 189
            G  V+ Y+ K+ +  D  + +A++DMY KCG                            
Sbjct: 258 VGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLS 317

Query: 190 ----IDLAMQVFHSYGDK----DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
               +D A++VF+ + D+    +V  +TS I   + NG  +EA ELF +M++ G+ P+++
Sbjct: 318 RNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPNAV 377

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
           +  +++ AC ++  +  G    H      GI  ++   + ++D+  + G ++ A      
Sbjct: 378 TIPSLIPACGNISALMHG-KEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDK 436

Query: 302 MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD 342
           M    + V W  ++    +H  A+    + +M+++S Q  D
Sbjct: 437 MSAL-NLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPD 476



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 99/191 (51%), Gaps = 1/191 (0%)

Query: 97  NQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALD 156
           + +P  +L S+  LI  FA++      L  F  +  L L P++ +L S + +CA L ALD
Sbjct: 62  SHLPHPTLFSFSSLIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALD 121

Query: 157 YGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLA 216
            G  ++++        DSI+ ++L  MY KC  I  A ++F    D+DV  +++ I G +
Sbjct: 122 PGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYS 181

Query: 217 MNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPEL 276
             G   EA ELF  M+S G+ P+ +S+  +L+   + G+ ++    F  M  V G  P+ 
Sbjct: 182 RLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMML-VQGFWPDG 240

Query: 277 DHYACMVDLLG 287
              +C++  +G
Sbjct: 241 STVSCVLPAVG 251


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/550 (36%), Positives = 307/550 (55%), Gaps = 39/550 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + +KN F  D++V   LI  YS  G +  AR + +  +  DVVSW SMI GYV++    E
Sbjct: 371 LSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEE 430

Query: 61  GLKLFDKMPQ--------------------------------------RNDVS-WNSILG 81
            L  F +M                                          D+S WN+++ 
Sbjct: 431 ALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVN 490

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              R G  ++A  +F ++  +  ++W  LISGF Q+   K+AL +F +M     + N   
Sbjct: 491 LYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFT 550

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
            +S +SA A L  +  G  V+    K     ++ +  ALI +Y KCGSI+ A  +F    
Sbjct: 551 FISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMS 610

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
            ++  ++ + I   + +G  +EA +LF+ MK +G+ P+ +++I VL+ACSH+G VE+G  
Sbjct: 611 LRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLS 670

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           YF SM +V+G+ P  DHYAC+VD+LGRAG L+ A  F+  MP+  + +IW TLL AC+VH
Sbjct: 671 YFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVH 730

Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
           +N E+G+     L+E + +    Y+LLSN Y  T K  N ++VRK M+ R I++ PG S 
Sbjct: 731 KNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSW 790

Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIG 441
           IE+   VH F  GDR H  + +IY+F  E+  ++   GY  E  ++  + E+E+K+    
Sbjct: 791 IEVKNAVHAFFVGDRLHPLSDQIYKFLSELNDRLSKIGYKQENPNLFHEKEQEQKDPTAF 850

Query: 442 YHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
            HSEKLA+AFGL+   P   +R++KN+R+C DCHS MK  S+V +R+I +RD   +HHF 
Sbjct: 851 VHSEKLAVAFGLMTLPPCIPLRVIKNLRVCDDCHSWMKCTSEVTRREIVLRDVYRFHHFN 910

Query: 502 DGSCSCLEYW 511
            GSCSC +YW
Sbjct: 911 SGSCSCGDYW 920



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/354 (28%), Positives = 161/354 (45%), Gaps = 41/354 (11%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           V      D  + N LI  Y+  G V  AR VF E    D VSW +M++GY ++G   E  
Sbjct: 70  VVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAF 129

Query: 63  KLFDKM------PQRNDVS---------------------------------WNSILGGL 83
           +L+ +M      P    +S                                  N+++   
Sbjct: 130 RLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALY 189

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
           + FGS   A RVF  M     V++  LISG AQ G  + AL +F EMQ   L P+   + 
Sbjct: 190 LGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVA 249

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           SLL+ACA +G L  G  ++SY+ K  +  D I   +L+D+Y KCG I+ A  +F+     
Sbjct: 250 SLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRT 309

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           +V  +   +          ++FE+F  M++ GI P+  +Y  +L  C+  G +E G    
Sbjct: 310 NVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELG-EQI 368

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
           HS+   +G + ++     ++D+  + G L++A   I  M  K D V W +++  
Sbjct: 369 HSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARK-ILEMLEKRDVVSWTSMIAG 421



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 164/359 (45%), Gaps = 41/359 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K   ++D   + SL+  Y  CG +  A  +F+  D  +VV WN M+  Y +  ++ + 
Sbjct: 271 LLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKS 330

Query: 62  LKLFDKMP----QRNDVSWNSIL-------------------------------GGLV-- 84
            ++F +M       N  ++  IL                               G L+  
Sbjct: 331 FEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDM 390

Query: 85  --RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             ++G +D A ++   + KR +VSW  +I+G+ Q+   +EALA F+EMQ   + P++  L
Sbjct: 391 YSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGL 450

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S  SACA + A+  G  +++ +       D  +   L+++YA+CG  + A  +F     
Sbjct: 451 ASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEH 510

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           KD   +   I G   +    +A  +F  M   G   +  ++I+ +SA ++L  +++G   
Sbjct: 511 KDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQG-KQ 569

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            H      G   E +    ++ L G+ G +E+A+   + M ++ + V W T++ +C  H
Sbjct: 570 VHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLR-NEVSWNTIITSCSQH 627



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 164/367 (44%), Gaps = 44/367 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V K +F  + FV N+LI  Y   G  + A  VF +    D V++N++I+G+ + G     
Sbjct: 170 VYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECA 229

Query: 62  LKLFDKMPQ---RND------------------------------------VSWNSILGG 82
           L++FD+M     R D                                    ++  S+L  
Sbjct: 230 LQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDL 289

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
            V+ G ++ A  +FN   + ++V W +++  + Q     ++  +F +MQ+  + PN    
Sbjct: 290 YVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTY 349

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
             +L  C   G ++ G  ++S   K   + D  +   LIDMY+K G +D A ++      
Sbjct: 350 PCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEK 409

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           +DV ++TS I G   +    EA   F+ M+  G+ PD+I   +  SAC+ +  + +G   
Sbjct: 410 RDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGL-Q 468

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL---GACR 319
            H+   V G   ++  +  +V+L  R G  EEA +    +  K D + W  L+   G  R
Sbjct: 469 IHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHK-DEITWNGLISGFGQSR 527

Query: 320 VHRNAEM 326
           +++ A M
Sbjct: 528 LYKQALM 534



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 69/165 (41%), Gaps = 16/165 (9%)

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
            CR       RSL  ++V          P++ L+L     S      SA L   L AC  
Sbjct: 2   TCREVAASLHRSLAKFIV-------PDNPEKILSLVAAKASHHRALGSADLTCALQACRG 54

Query: 152 LGALDYGNW-----VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
            G      W     +++    + +  D ++   LID+YAK G +  A QVF     +D  
Sbjct: 55  RG----NRWPLVLEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHV 110

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS 251
           ++ + + G A +G   EAF L+  M    + P      +VLSAC+
Sbjct: 111 SWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACT 155


>gi|77553572|gb|ABA96368.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 605

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 176/443 (39%), Positives = 277/443 (62%), Gaps = 9/443 (2%)

Query: 78  SILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQ---------NGRPKEALALFR 128
           ++LG   R G +    RVF+++    L +W  L+S +A+                L LF 
Sbjct: 163 ALLGVFARCGRIASCRRVFDRIAHPDLPAWNALLSAYARLRARDVACATSAADAILELFV 222

Query: 129 EMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCG 188
            M SL +EPN   LV+++ AC +LGA+ +G W ++Y  K+ + ++ I+  AL++MYA CG
Sbjct: 223 RMLSLAIEPNEITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVNCIVATALVEMYAGCG 282

Query: 189 SIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248
            +DLA QVF +  D+D   Y + + GLA++GH   A  L + M   G+  D ++ ++V+ 
Sbjct: 283 RLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRAALSLLDRMHGAGVPVDGVTVLSVMC 342

Query: 249 ACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDN 308
           AC+H G V++G  YF  M    GI+P ++HY CM+D+L RAG L  AE  I  M + P+ 
Sbjct: 343 ACAHAGLVDEGLDYFDRMEIEFGIEPRIEHYGCMIDMLSRAGRLNNAEKLIHEMLIVPNA 402

Query: 309 VIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTM 368
            I+ +L+ AC +H   E+G+++   L+  + +  G ++L+SN Y  T + E+A++ RK M
Sbjct: 403 AIYRSLIRACGIHGKLELGEKMIAELMRLEPDDSGNHVLISNFYARTNRWEDAKKARKEM 462

Query: 369 RKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVM 428
           +   I + PG SL++++GV+HEFL GD++H  ++EIY   EEI  ++   G    T S +
Sbjct: 463 KSMGIDKNPGSSLVDINGVLHEFLVGDKTHPASKEIYTMVEEIETRLIECGRRSSTSSAL 522

Query: 429 FDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRK 488
           FD+EEE+K   + YHSE+LA+AF LI + PG+ IRI+KN+R+C+DCH + KLVS+V+ R+
Sbjct: 523 FDVEEEDKADTLSYHSERLAIAFALIASNPGAPIRIIKNLRVCADCHESAKLVSRVYGRE 582

Query: 489 ISIRDRKHYHHFEDGSCSCLEYW 511
           I +RDR  +HHF DG CSC ++W
Sbjct: 583 IVMRDRTRFHHFRDGVCSCGDFW 605



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 81/174 (46%), Gaps = 12/174 (6%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           VK   A +  V  +L++ Y+ CGR+  A  VF  + D D   +N+M++G   +G     L
Sbjct: 260 VKRRLAVNCIVATALVEMYAGCGRLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRAAL 319

Query: 63  KLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMP-----KRSLVSWVVLISG 113
            L D+M       + V+  S++      G VD+    F++M      +  +  +  +I  
Sbjct: 320 SLLDRMHGAGVPVDGVTVLSVMCACAHAGLVDEGLDYFDRMEIEFGIEPRIEHYGCMIDM 379

Query: 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK 167
            ++ GR   A  L  EM    + PN+AI  SL+ AC   G L+ G  + + + +
Sbjct: 380 LSRAGRLNNAEKLIHEML---IVPNAAIYRSLIRACGIHGKLELGEKMIAELMR 430



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/240 (20%), Positives = 98/240 (40%), Gaps = 53/240 (22%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVR---------NGEILE 60
           D  +  +L+  ++ CGR+   R VFD     D+ +WN++++ Y R               
Sbjct: 157 DRVLGAALLGVFARCGRIASCRRVFDRIAHPDLPAWNALLSAYARLRARDVACATSAADA 216

Query: 61  GLKLFDKM----PQRNDVSWNSILGGLVRFGSV--------------------------- 89
            L+LF +M     + N+++  +++G     G+V                           
Sbjct: 217 ILELFVRMLSLAIEPNEITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVNCIVATALVE 276

Query: 90  --------DDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
                   D A +VF     R    +  ++ G A +G  + AL+L   M    +  +   
Sbjct: 277 MYAGCGRLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRAALSLLDRMHGAGVPVDGVT 336

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKC---IKLDSILCAALIDMYAKCGSIDLAMQVFH 198
           ++S++ ACA  G +D G   +  ++ +     +++   C  +IDM ++ G ++ A ++ H
Sbjct: 337 VLSVMCACAHAGLVDEGLDYFDRMEIEFGIEPRIEHYGC--MIDMLSRAGRLNNAEKLIH 394



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 58/145 (40%), Gaps = 9/145 (6%)

Query: 126 LFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYA 185
           LF       L PN+     L  A     AL        ++       D +L AAL+ ++A
Sbjct: 110 LFLSSSPPLLRPNAFTYPPLFRAAPPALALALATHSVKFLGAHAASCDRVLGAALLGVFA 169

Query: 186 KCGSIDLAMQVFHSYGDKDVSAYTSAIFGLA---------MNGHSIEAFELFENMKSKGI 236
           +CG I    +VF      D+ A+ + +   A             +    ELF  M S  I
Sbjct: 170 RCGRIASCRRVFDRIAHPDLPAWNALLSAYARLRARDVACATSAADAILELFVRMLSLAI 229

Query: 237 SPDSISYIAVLSACSHLGWVEKGFY 261
            P+ I+ +AV+ AC  LG V  G +
Sbjct: 230 EPNEITLVAVIGACGELGAVSHGVW 254


>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
 gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
          Length = 687

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/551 (35%), Positives = 312/551 (56%), Gaps = 41/551 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           + + SF  D+FV  +LI  Y+ C    +A  VF      ++++W+++I  +  +G   E 
Sbjct: 137 ISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITWSAIITAFADHGHCGEA 196

Query: 62  LKLFDKMPQR----NDVSWNSILGGLV--------------------------------- 84
           L+ F  M Q     N V++ S+L G                                   
Sbjct: 197 LRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMSNALVNV 256

Query: 85  ----RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
                 G +D A  +  +M ++ + +W VLI+G+  +GR +EAL  ++ +Q   +  +  
Sbjct: 257 YGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLHGRSREALETYQRLQLEAIPVDKV 316

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
             +S+L+AC    +L  G  ++S   +  +  D I+  AL +MY+KCGS++ A ++F S 
Sbjct: 317 TFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSM 376

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
             +   ++   +   A +G S E  +L   M+ +G+  + I++++VLS+CSH G + +G 
Sbjct: 377 PIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGC 436

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
            YFHS+    GI+ + +HY C+VDLLGRAG L+EAE +I+ MP +P+ V W +LLGACRV
Sbjct: 437 QYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPSEPEIVTWASLLGACRV 496

Query: 321 HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS 380
           H++ + G+     L+E D  +    ++LSNIY E    +NA ++R+ M  R++K+ PG S
Sbjct: 497 HKDLDRGKLAARKLLELDPGNSSASVVLSNIYSERGDWKNAAKLRRAMASRRVKKVPGIS 556

Query: 381 LIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVI 440
            I++   VHEF   D SH +  EIY   EE+   ++  GY  +T+ V+ D++EE+KE+++
Sbjct: 557 SIQVKNKVHEFRVRDTSHPRAAEIYDKVEELCFAMREAGYVPDTKMVLHDVDEEQKESLL 616

Query: 441 GYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF 500
            YHSEKLA+AFGLI T   S + I KN+R+C DCH+A K +SK+  R+I +RD   +HHF
Sbjct: 617 AYHSEKLAIAFGLISTPEKSSLHIFKNLRVCEDCHTATKFISKITGREIVVRDNHRFHHF 676

Query: 501 EDGSCSCLEYW 511
            DGSCSC +YW
Sbjct: 677 RDGSCSCKDYW 687



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 171/365 (46%), Gaps = 43/365 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V ++  + DVFV  +L+  Y+ CG + DAR VFD      V +WNSMI+ Y  +    E 
Sbjct: 36  VRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEA 95

Query: 62  LKLFDKMPQRND----VSWNSILGGLV--------------------------------- 84
             +F +M    +    V++ SIL   V                                 
Sbjct: 96  FFIFQRMQHEGERCDRVTFLSILDACVNPENLQHGKHVRESISETSFELDLFVGTALITM 155

Query: 85  --RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             R  S ++A +VF +M +++L++W  +I+ FA +G   EAL  FR MQ   + PN    
Sbjct: 156 YARCRSPENAAQVFGRMKQKNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTF 215

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC--GSIDLAMQVFHSY 200
           +SLL+       L+  + ++  I +  +   + +  AL+++Y +C  G +D+A  +    
Sbjct: 216 ISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEM 275

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
            ++ ++A+   I G  ++G S EA E ++ ++ + I  D +++I+VL+AC+    + +G 
Sbjct: 276 DEQQITAWNVLINGYTLHGRSREALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEG- 334

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
              HS     G+  ++     + ++  + G +E A     SMP++   V W  +L A   
Sbjct: 335 KMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIR-SAVSWNGMLQAYAQ 393

Query: 321 HRNAE 325
           H  +E
Sbjct: 394 HGESE 398



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 91/185 (49%), Gaps = 6/185 (3%)

Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
           ++ N    +++L++     AL  G +++S +++    LD  +  AL++ Y KCGS+  A 
Sbjct: 6   VKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDAR 65

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
           +VF     + V  + S I   +++  S EAF +F+ M+ +G   D ++++++L AC +  
Sbjct: 66  KVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDACVNPE 125

Query: 255 WVEKGFYYFHSMFDVHGIKPELDHY--ACMVDLLGRAGLLEEAENFIASMPMKPDNVIWG 312
            ++ G +   S+ +      ELD +    ++ +  R    E A      M  K + + W 
Sbjct: 126 NLQHGKHVRESISET---SFELDLFVGTALITMYARCRSPENAAQVFGRMKQK-NLITWS 181

Query: 313 TLLGA 317
            ++ A
Sbjct: 182 AIITA 186


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/552 (35%), Positives = 317/552 (57%), Gaps = 52/552 (9%)

Query: 12  FVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ- 70
           FV ++L+  Y  C +V     VFD   D  +  WN+MI GY +N    E L LF +M + 
Sbjct: 335 FVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEES 394

Query: 71  ---------------------------------------RNDVSWNSILGGLVRFGSVDD 91
                                                  R+    N+++    R G +D 
Sbjct: 395 AGLLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDI 454

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD-----------LEPNSA 140
           A R+F +M  R LV+W  +I+G+  + R ++AL +  +MQ L+           L+PNS 
Sbjct: 455 AKRIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQILERKASERASRVSLKPNSI 514

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
            L+++L +CA L AL  G  +++Y  K  +  D  + +AL+DMYAKCG + ++ +VF   
Sbjct: 515 TLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQI 574

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
             ++V  +   +    M+G+S +A ++   M  +G+ P+ +++I+V +ACSH G V +G 
Sbjct: 575 PIRNVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGL 634

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNV-IWGTLLGACR 319
             F++M   +G++P  DHYAC+VDLLGRAG ++EA   I  +P   D    W +LLGACR
Sbjct: 635 KIFYNMKKDYGVEPSSDHYACVVDLLGRAGRVKEAYQLINLIPRNFDKAGAWSSLLGACR 694

Query: 320 VHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGC 379
           +H N E+G+     LI+ + N    Y+LL+NIY        A EVR+ M+ + +++ PGC
Sbjct: 695 IHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWYKATEVRRNMKAQGVRKEPGC 754

Query: 380 SLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETV 439
           S IE    VH+F+AGD SH +++++  + E + ++++  GY  +T  V+ ++EE+EKE +
Sbjct: 755 SWIEHGDEVHKFVAGDSSHPQSEKLRGYLETLWERMRKEGYIPDTSCVLHNVEEDEKEIL 814

Query: 440 IGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHH 499
           +  HSEKLA+AFG++ T PG++IR+ KN+R+C+DCH A K +SKV  R+I +RD + +HH
Sbjct: 815 LCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKVVDREIILRDVRRFHH 874

Query: 500 FEDGSCSCLEYW 511
           F++G+CSC +YW
Sbjct: 875 FKNGTCSCGDYW 886



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 172/367 (46%), Gaps = 56/367 (15%)

Query: 12  FVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP-- 69
           F+ N+L+  Y   G++  ++ +    +  D+V+WN++++   +N + LE L+   +M   
Sbjct: 233 FIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLE 292

Query: 70  --QRNDVSWNSILGG----------------LVRFGSVDD-------------------- 91
             + +  + +S+L                   ++ GS+D+                    
Sbjct: 293 GVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLS 352

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQ-SLDLEPNSAILVSLLSACA 150
            CRVF+ M  R +  W  +I+G+AQN   +EAL LF EM+ S  L  NS  +  ++ AC 
Sbjct: 353 GCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACV 412

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
           + GA      ++ ++ K+ +  D  +  AL+DMY++ G ID+A ++F    D+D+  + +
Sbjct: 413 RSGAFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNT 472

Query: 211 AIFGLAMNGHSIEAFELFENMK-----------SKGISPDSISYIAVLSACSHLGWVEKG 259
            I G   +    +A  +   M+              + P+SI+ + +L +C+ L  + KG
Sbjct: 473 IITGYVFSERHEDALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKG 532

Query: 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVI-WGTLLGAC 318
               H+    + +  ++   + +VD+  + G L+ +      +P++  NVI W  ++ A 
Sbjct: 533 -KEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIR--NVITWNVIVMAY 589

Query: 319 RVHRNAE 325
            +H N++
Sbjct: 590 GMHGNSQ 596



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 101/221 (45%), Gaps = 35/221 (15%)

Query: 42  VVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPK 101
           V   N+++N Y + G+     K+FD++ +RN VSWNS++  L  F               
Sbjct: 129 VTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFE-------------- 174

Query: 102 RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG---ALDYG 158
                W             + AL  FR M   D+EP+S  LVS+  AC+       L  G
Sbjct: 175 ----KW-------------EMALEAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMG 217

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
             V++Y  +K  +L+S +   L+ MY K G +  +  +  S+  +D+  + + +  L  N
Sbjct: 218 KQVHAYGLRKG-ELNSFIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQN 276

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
              +EA E    M  +G+ PD  +  +VL ACSHL  +  G
Sbjct: 277 EQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTG 317



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 117/248 (47%), Gaps = 51/248 (20%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYV-------- 53
           VVK     D FV+N+L+  YS  G++  A+ +F + +D D+V+WN++I GYV        
Sbjct: 427 VVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERHEDA 486

Query: 54  ----RNGEILE---------------GLKLFDKMPQ------------------RNDVSW 76
                  +ILE                + L   +P                   +N+++ 
Sbjct: 487 LLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLAT 546

Query: 77  NSILGGLV-----RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQ 131
           +  +G  +     + G +  + +VF+Q+P R++++W V++  +  +G  ++A+ + R M 
Sbjct: 547 DVAVGSALVDMYAKCGCLQMSRKVFDQIPIRNVITWNVIVMAYGMHGNSQDAIDMLRMMM 606

Query: 132 SLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKK-CIKLDSILCAALIDMYAKCGSI 190
              ++PN    +S+ +AC+  G ++ G  ++  ++K   ++  S   A ++D+  + G +
Sbjct: 607 VQGVKPNEVTFISVFAACSHSGMVNEGLKIFYNMKKDYGVEPSSDHYACVVDLLGRAGRV 666

Query: 191 DLAMQVFH 198
             A Q+ +
Sbjct: 667 KEAYQLIN 674



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 111/234 (47%), Gaps = 6/234 (2%)

Query: 107 WVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQ 166
           W+ L+    ++   +EA+  + +M  L ++P++    +LL A A L  +D G  +++++ 
Sbjct: 61  WIDLLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVY 120

Query: 167 KKCIKLDSILCA-ALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
           K    +DS+  A  L+++Y KCG      +VF    +++  ++ S I  L        A 
Sbjct: 121 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 180

Query: 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA--CMV 283
           E F  M  + + P S + ++V  ACS+    E G      +      K EL+ +    +V
Sbjct: 181 EAFRCMLDEDVEPSSFTLVSVALACSNFPMPE-GLLMGKQVHAYGLRKGELNSFIINTLV 239

Query: 284 DLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA-CRVHRNAEMGQRIGNMLIE 336
            + G+ G L  ++  + S   + D V W T+L + C+  +  E  + +  M++E
Sbjct: 240 AMYGKMGKLASSKVLLGSFEGR-DLVTWNTVLSSLCQNEQFLEALEYLREMVLE 292


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/547 (36%), Positives = 309/547 (56%), Gaps = 41/547 (7%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL- 62
           ++ F   V V N+L+  Y  CG  R AR VF       VVSWN+MI+G  +NGE  E   
Sbjct: 274 RSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFA 333

Query: 63  -------------------------------------KLFDKMPQRNDVS-WNSILGGLV 84
                                                KL DK+   ++VS  NS++    
Sbjct: 334 TFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYS 393

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
           +   VD A  +FN + K + V+W  +I G+AQNG  KEAL LF  MQS  ++ +   LV 
Sbjct: 394 KCKRVDIAASIFNNLEKTN-VTWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVG 452

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           +++A A         W++    + C+  +  +  AL+DMYAKCG+I  A ++F    ++ 
Sbjct: 453 VITALADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERH 512

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           V  + + I G   +G   E  +LF  M+   + P+ I++++V+SACSH G+VE+G   F 
Sbjct: 513 VITWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFK 572

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
           SM + + ++P +DHY+ MVDLLGRAG L++A NFI  MP+KP   + G +LGAC++H+N 
Sbjct: 573 SMQEDYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISVLGAMLGACKIHKNV 632

Query: 325 EMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIEL 384
           E+G++    L + D +  G ++LL+NIY      +   +VR  M  + + + PGCS +EL
Sbjct: 633 ELGEKAAQKLFKLDPDEGGYHVLLANIYASNSMWDKVAKVRTAMEDKGLHKTPGCSWVEL 692

Query: 385 DGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHS 444
              +H F +G  +H ++++IY F E +  +IK  GY  +  S+  D+EE+ K+ ++  HS
Sbjct: 693 RNEIHTFYSGSTNHPESKKIYAFLETLGDEIKAAGYVPDPDSI-HDVEEDVKKQLLSSHS 751

Query: 445 EKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGS 504
           E+LA+AFGL+ T PG+ + I KN+R+C DCH   K +S V  R+I +RD + +HHF++GS
Sbjct: 752 ERLAIAFGLLNTSPGTTLHIRKNLRVCGDCHDTTKYISLVTGREIIVRDLRRFHHFKNGS 811

Query: 505 CSCLEYW 511
           CSC +YW
Sbjct: 812 CSCGDYW 818



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 163/354 (46%), Gaps = 44/354 (12%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESD-DLDVVSWNSMINGYVRNGEILE 60
           ++KN F  +   +  +I  +   G   +A  VF+  +  LDV+ ++ M+ GY +N  + +
Sbjct: 70  IIKNGFYNEHLFQTKVISLFCKFGSNSEAARVFEHVELKLDVL-YHIMLKGYAKNSSLGD 128

Query: 61  GLKLFDKMP---------------------------------------QRNDVSWNSILG 81
            L  F +M                                        + N     +++ 
Sbjct: 129 ALCFFLRMMCDEVRLVVGDYACLLQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMS 188

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              +   +D+A ++F +M  + LVSW  L++G+AQNG  K AL L  +MQ    +P+S  
Sbjct: 189 LYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVT 248

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           LVS+L A A + AL  G  ++ Y  +   +    +  AL+DMY KCGS  +A  VF    
Sbjct: 249 LVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMR 308

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
            K V ++ + I G A NG S EAF  F  M  +G  P  ++ + VL AC++LG +E+G +
Sbjct: 309 SKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERG-W 367

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
           + H + D   +   +     ++ +  +   ++ A +   +  ++  NV W  ++
Sbjct: 368 FVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNN--LEKTNVTWNAMI 419



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/362 (25%), Positives = 165/362 (45%), Gaps = 46/362 (12%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +++ N F  ++FV  +++  Y+ C ++ +A  +F+     D+VSW +++ GY +NG    
Sbjct: 170 LIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKR 229

Query: 61  GLKLFDKM----------------PQRNDVS-----------------------WNSILG 81
            L+L  +M                P   D+                         N++L 
Sbjct: 230 ALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALLD 289

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + GS   A  VF  M  +++VSW  +I G AQNG  +EA A F +M      P    
Sbjct: 290 MYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVT 349

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCA--ALIDMYAKCGSIDLAMQVFHS 199
           ++ +L ACA LG L+ G +V+  + K  +KLDS +    +LI MY+KC  +D+A  +F++
Sbjct: 350 MMGVLLACANLGDLERGWFVHKLLDK--LKLDSNVSVMNSLISMYSKCKRVDIAASIFNN 407

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
               +V+ + + I G A NG   EA  LF  M+S+GI  D  + + V++A +    V + 
Sbjct: 408 LEKTNVT-WNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALADFS-VNRQ 465

Query: 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACR 319
             + H +     +   +     +VD+  + G ++ A      M  +   + W  ++    
Sbjct: 466 AKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLF-DMMQERHVITWNAMIDGYG 524

Query: 320 VH 321
            H
Sbjct: 525 TH 526



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 113/245 (46%), Gaps = 10/245 (4%)

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
           +FGS  +A RVF  +  +  V + +++ G+A+N    +AL  F  M   ++         
Sbjct: 91  KFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNSSLGDALCFFLRMMCDEVRLVVGDYAC 150

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           LL  C +   L  G  ++  I     + +  +  A++ +YAKC  ID A ++F     KD
Sbjct: 151 LLQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKD 210

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF---- 260
           + ++T+ + G A NGH+  A +L   M+  G  PDS++ +++L A + +  +  G     
Sbjct: 211 LVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHG 270

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
           Y F S     G +  ++    ++D+  + G    A      M  K   V W T++  C  
Sbjct: 271 YAFRS-----GFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKT-VVSWNTMIDGCAQ 324

Query: 321 HRNAE 325
           +  +E
Sbjct: 325 NGESE 329



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 83/158 (52%), Gaps = 12/158 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + V+     +VFV  +L+  Y+ CG ++ AR +FD   +  V++WN+MI+GY  +G   E
Sbjct: 472 LAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVITWNAMIDGYGTHGVGKE 531

Query: 61  GLKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMP-----KRSLVSWVVLI 111
            L LF++M     + ND+++ S++      G V++   +F  M      + ++  +  ++
Sbjct: 532 TLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQEDYYLEPTMDHYSAMV 591

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
               + G+  +A    +EM    ++P  ++L ++L AC
Sbjct: 592 DLLGRAGQLDDAWNFIQEMP---IKPGISVLGAMLGAC 626


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 208/558 (37%), Positives = 313/558 (56%), Gaps = 56/558 (10%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFD----ESDDLDVVSWNSMINGYVRNGEILEGLKLF 65
           DV   N+++  YS  GR+  A  +F+    E+ +LDVV+W ++I GY + G+  E L +F
Sbjct: 429 DVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVF 488

Query: 66  DKM----PQRNDVSWNSILGGLVRFGSV-----------------------DDACRVFNQ 98
            +M     + N V+  S+L   V  G++                        D  +V N 
Sbjct: 489 RQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVING 548

Query: 99  M---------------------PK-RSLVSWVVLISGFAQNGRPKEALALFREMQSLD-- 134
           +                     PK R +V+W V+I G+AQ+G    AL LF  M  +D  
Sbjct: 549 LIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKS 608

Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCA-ALIDMYAKCGSIDLA 193
           ++PN   L   L ACA+L AL +G  V++Y+ +       +  A  LIDMY+K G +D A
Sbjct: 609 IKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTA 668

Query: 194 MQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL 253
             VF +   ++  ++TS + G  M+G   +A  +F+ M+   + PD I+++ VL ACSH 
Sbjct: 669 QIVFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHS 728

Query: 254 GWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGT 313
           G V+ G  +F+ M    G+ P  +HYACMVDL GRAG L EA   I  MPM+P  V+W  
Sbjct: 729 GMVDHGINFFNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVA 788

Query: 314 LLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKI 373
           LL ACR+H N E+G+   N L+E +  +DG Y LLSNIY    + ++   +R TM++  I
Sbjct: 789 LLSACRLHSNVELGEFAANRLLELESGNDGSYTLLSNIYANARRWKDVARIRYTMKRTGI 848

Query: 374 KRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEE 433
           K+ PGCS I+    V  F  GDRSH ++Q+IY+   +++++IK  GY  +T   + D+++
Sbjct: 849 KKRPGCSWIQGRKGVATFYVGDRSHPQSQQIYETLADLIQRIKAIGYVPQTSFALHDVDD 908

Query: 434 EEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRD 493
           EEK  ++  HSEKLALA+G++   P + IRI KN+RIC DCHSA+  +SK+ + +I +RD
Sbjct: 909 EEKGDLLFEHSEKLALAYGILTLHPRAPIRITKNLRICGDCHSAITYISKIIEHEIILRD 968

Query: 494 RKHYHHFEDGSCSCLEYW 511
              +HHF++GSCSC  YW
Sbjct: 969 SSRFHHFKNGSCSCKGYW 986



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 104/354 (29%), Positives = 164/354 (46%), Gaps = 68/354 (19%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +++    DVFV N+++  Y+ CG++ +A  VF      DVVSWN+M+ GY + G +   L
Sbjct: 391 IRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHAL 450

Query: 63  KLFDKMPQRN----DVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNG 118
            LF++M + N     V+W +++ G                               +AQ G
Sbjct: 451 SLFERMTEENIELDVVTWTAVITG-------------------------------YAQRG 479

Query: 119 RPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCA 178
           +  EAL +FR+M      PN   LVSLLSAC  +GAL +G   + Y  K  + LD     
Sbjct: 480 QGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPG 539

Query: 179 A--------LIDMYAKCGSIDLAMQVFHSYG--DKDVSAYTSAIFGLAMNGHSIEAFELF 228
           A        LIDMYAKC S ++A ++F S    D+DV  +T  I G A +G +  A +LF
Sbjct: 540 ADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLF 599

Query: 229 ENM--KSKGISPDSISYIAVLSACSHL----------GWVEKGFYYFHSMFDVHGIKPEL 276
             M    K I P+  +    L AC+ L           +V + FY    +F  +      
Sbjct: 600 SGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVAN------ 653

Query: 277 DHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
               C++D+  ++G ++ A+    +MP + + V W +L+    +H   E   R+
Sbjct: 654 ----CLIDMYSKSGDVDTAQIVFDNMPQR-NAVSWTSLMTGYGMHGRGEDALRV 702



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 134/311 (43%), Gaps = 47/311 (15%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRS---LVSWVVLISGFAQNGRPKEALALFREMQSL 133
           N+++    + G++  A  +F+ +  R    LVSW  ++S +        ALALF +M + 
Sbjct: 298 NAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTR 357

Query: 134 DL-EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDL 192
            L  P+   LV++L ACA L A   G  V+ +  +  +  D  +  A++DMYAKCG ++ 
Sbjct: 358 HLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEE 417

Query: 193 AMQVFHSYGDKDVSA-----------------------------------YTSAIFGLAM 217
           A +VF     KDV +                                   +T+ I G A 
Sbjct: 418 ANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQ 477

Query: 218 NGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWV----EKGFYYFHSMFDVHGIK 273
            G   EA ++F  M   G  P+ ++ +++LSAC  +G +    E   Y    + ++ G  
Sbjct: 478 RGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPD 537

Query: 274 PELDHYAC---MVDLLGRAGLLEEAENFIASM-PMKPDNVIWGTLLGACRVHRNAEMGQR 329
           P  D       ++D+  +    E A     S+ P   D V W  ++G    H +A    +
Sbjct: 538 PGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQ 597

Query: 330 IGNMLIESDQN 340
           + + + + D++
Sbjct: 598 LFSGMFKMDKS 608



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 121/272 (44%), Gaps = 12/272 (4%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKR--SLVSWVVLISGFAQNGRPKEALALFREMQSLD 134
            +++G  +   S   A  +  ++P    S+  W  LI      G P++   L+R+M+SL 
Sbjct: 195 TNLIGTYIASNSTAYAILLLERLPPSPSSVFWWNQLIRRALHLGSPRDVFTLYRQMKSLG 254

Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
             P+      +  ACA L +L  G  +++ + +     +  +C A++ MY KCG++  A 
Sbjct: 255 WTPDHYTFPFVFKACANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCGALRHAH 314

Query: 195 QVFHSY---GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGI-SPDSISYIAVLSAC 250
            +F      G +D+ ++ S +        +  A  LF  M ++ + SPD IS + +L AC
Sbjct: 315 NMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPAC 374

Query: 251 SHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVI 310
           + L    +G    H      G+  ++     +VD+  + G +EEA      M  K D V 
Sbjct: 375 ASLAASLRG-RQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFK-DVVS 432

Query: 311 WGTLLG----ACRVHRNAEMGQRIGNMLIESD 338
           W  ++     A R+     + +R+    IE D
Sbjct: 433 WNAMVTGYSQAGRLEHALSLFERMTEENIELD 464


>gi|218184628|gb|EEC67055.1| hypothetical protein OsI_33800 [Oryza sativa Indica Group]
          Length = 513

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/435 (42%), Positives = 275/435 (63%), Gaps = 1/435 (0%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136
           +++L    R G +D A  VF+Q+  ++ VSW  LI+GFA+ G  +  L +F EMQ    E
Sbjct: 80  SALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFE 139

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
                  S+ SA A +GAL+ G WV++++ K   +L + +   ++DMYAK GS+  A +V
Sbjct: 140 ATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKV 199

Query: 197 FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWV 256
           F     KD+  + S +   A  G   EA   FE M+  G+  + I+++++L+ACSH G V
Sbjct: 200 FDHVDKKDLVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLV 259

Query: 257 EKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLG 316
           ++G  YF  M   H ++PE+DHY  +VDLLGRAGLL +A  FI  MPMKP   +WG LLG
Sbjct: 260 KEGKQYF-DMMKEHNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLG 318

Query: 317 ACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRA 376
           +CR+H+NA++GQ   + + E D +  G  +LL NIY  T + + A  VRK M+   +K+ 
Sbjct: 319 SCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKE 378

Query: 377 PGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEK 436
           P CS +E++  VH F+A D +H +++EIY+ WEEI  +I+  GY   T  V+  ++E+E+
Sbjct: 379 PACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQER 438

Query: 437 ETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKH 496
           +  + YHSEK+ALAF LI    G+ IRI+KNIRIC DCHSA + +SKVF+R+I +RD   
Sbjct: 439 QAKLQYHSEKIALAFALINMPLGATIRIMKNIRICGDCHSAFRYISKVFEREIVVRDTNR 498

Query: 497 YHHFEDGSCSCLEYW 511
           +HHF  GSCSC +YW
Sbjct: 499 FHHFSSGSCSCGDYW 513



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 118/254 (46%), Gaps = 41/254 (16%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + VK  +  DV+V ++L+  Y+ CGR+  A  VFD+ +  + VSWN++I G+ R G+   
Sbjct: 66  LTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGET 125

Query: 61  GLKLFDKMPQRNDV-----------------------SW-----------------NSIL 80
            L +F +M QRN                          W                 N+IL
Sbjct: 126 TLLMFAEM-QRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTIL 184

Query: 81  GGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
               + GS+ DA +VF+ + K+ LV+W  +++ FAQ G  +EA+  F EM+   +  N  
Sbjct: 185 DMYAKSGSMIDARKVFDHVDKKDLVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQI 244

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
             +S+L+AC+  G +  G   +  +++  ++ +      ++D+  + G ++ A+      
Sbjct: 245 TFLSILTACSHGGLVKEGKQYFDMMKEHNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKM 304

Query: 201 GDKDVSAYTSAIFG 214
             K  +A   A+ G
Sbjct: 305 PMKPTAAVWGALLG 318



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 103/219 (47%), Gaps = 2/219 (0%)

Query: 99  MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
           M  R + SW  LI+G+AQN  P EAL L   M     +PN     SLL A     +   G
Sbjct: 1   MSTRDMCSWTSLIAGYAQNDMPDEALGLLLGMLRGRFKPNGFTFASLLKAAGASASSGIG 60

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
             +++   K     D  + +AL+DMYA+CG +D+A+ VF     K+  ++ + I G A  
Sbjct: 61  EQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARK 120

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDH 278
           G       +F  M+  G      +Y +V SA + +G +E+G  + H+     G +     
Sbjct: 121 GDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQG-KWVHAHMIKSGERLSAFV 179

Query: 279 YACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
              ++D+  ++G + +A      +  K D V W ++L A
Sbjct: 180 GNTILDMYAKSGSMIDARKVFDHVD-KKDLVTWNSMLTA 217


>gi|115451769|ref|NP_001049485.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|108707037|gb|ABF94832.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113547956|dbj|BAF11399.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|125585525|gb|EAZ26189.1| hypothetical protein OsJ_10058 [Oryza sativa Japonica Group]
 gi|215706461|dbj|BAG93317.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 641

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/551 (35%), Positives = 298/551 (54%), Gaps = 47/551 (8%)

Query: 8   AYDVFVKNSLIQFYSVCGR-VRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFD 66
           A D+   N+LI   S   R +  AR +FD     D  +W+++++GY R+G+    L L+ 
Sbjct: 91  APDICSHNTLISALSRSPRHLPSARELFDRMPQRDHFAWSALVSGYTRHGQPEAALALYR 150

Query: 67  KMPQR--ND-------------------------------------------VSWNSILG 81
           +M +   ND                                           V W+++  
Sbjct: 151 RMQEEPGNDGADNEFTASSALAAAAAARCGRAGRELHCHVVRRGIDAAGGDAVLWSALAD 210

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM-QSLDLEPNSA 140
              + G VDDA RVF++MP R  VSW  ++  +   GR  E   LF  M ++  + PN  
Sbjct: 211 MYAKCGRVDDARRVFDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLHMLRTRGVRPNEF 270

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
               +L ACAQ     +G  V+  + K          +AL+ MY+KCG +  A++VF + 
Sbjct: 271 TYAGVLRACAQFAVESFGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDMGSAVRVFEAM 330

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
              D+ ++T+ I G A NG   EA   F+     GI PD ++++ VLSAC+H G V+KG 
Sbjct: 331 AKPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSACAHAGLVDKGL 390

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
             FHS+ + + I+   DHYAC++DLL R+G  E AE  I +M +KP+  +W +LLG CR+
Sbjct: 391 EIFHSIKEQYCIEHTADHYACVIDLLSRSGQFERAEKMIGNMAVKPNKFLWASLLGGCRI 450

Query: 321 HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS 380
           H+N  + +R    L E +  +   Y+ L+NIY      +  E+VR+ M  + I + P  S
Sbjct: 451 HKNVGLARRAAEALFEIEPENPATYVTLANIYASVGLFDEVEDVRRIMESKGITKMPASS 510

Query: 381 LIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVI 440
            IE+   VH FL GD+SH K  EIY   +++  K+   GY  +   V+ D+E+E+KE  I
Sbjct: 511 WIEVGRRVHVFLVGDKSHPKADEIYALLKKLYVKMVEEGYVADIEFVLHDVEDEQKEQDI 570

Query: 441 GYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF 500
           GYHSE+LA+AFG+I T  GS I++ KN+RIC DCH+A+KL+S++ +R I +RD   +HHF
Sbjct: 571 GYHSERLAVAFGIIATPEGSPIKVFKNLRICGDCHAAIKLISQIVQRDIIVRDSNRFHHF 630

Query: 501 EDGSCSCLEYW 511
           +DG CSC +YW
Sbjct: 631 KDGICSCRDYW 641



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 137/293 (46%), Gaps = 10/293 (3%)

Query: 58  ILEGLKLFDKMPQRNDVSWNSILGGLVRFGS-VDDACRVFNQMPKRSLVSWVVLISGFAQ 116
           + + L LF  +   +  S N+++  L R    +  A  +F++MP+R   +W  L+SG+ +
Sbjct: 79  LPDALALFSSIAAPDICSHNTLISALSRSPRHLPSARELFDRMPQRDHFAWSALVSGYTR 138

Query: 117 NGRPKEALALFREMQSL---DLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKL- 172
           +G+P+ ALAL+R MQ     D   N     S L+A A       G  ++ ++ ++ I   
Sbjct: 139 HGQPEAALALYRRMQEEPGNDGADNEFTASSALAAAAAARCGRAGRELHCHVVRRGIDAA 198

Query: 173 --DSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFEN 230
             D++L +AL DMYAKCG +D A +VF     +D  ++T+ +      G   E F LF +
Sbjct: 199 GGDAVLWSALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLH 258

Query: 231 M-KSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRA 289
           M +++G+ P+  +Y  VL AC+    VE      H      G        + ++ +  + 
Sbjct: 259 MLRTRGVRPNEFTYAGVLRACAQFA-VESFGRQVHGRMAKSGTGDSCFAESALLRMYSKC 317

Query: 290 GLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD 342
           G +  A     +M  KPD V W  ++     +   E   R  +M + S    D
Sbjct: 318 GDMGSAVRVFEAM-AKPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPD 369



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 77/157 (49%), Gaps = 12/157 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           + K+      F +++L++ YS CG +  A  VF+     D+VSW ++I+GY +NG+  E 
Sbjct: 295 MAKSGTGDSCFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEA 354

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLIS 112
           L+ FD   +     + V++  +L      G VD    +F+ + ++  +      +  +I 
Sbjct: 355 LRYFDMFLRSGIKPDHVTFVGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTADHYACVID 414

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
             +++G+ + A  +   M    ++PN  +  SLL  C
Sbjct: 415 LLSRSGQFERAEKMIGNMA---VKPNKFLWASLLGGC 448


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/552 (36%), Positives = 318/552 (57%), Gaps = 43/552 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           VK+    ++FV N+LI  Y   G + +A+ VF   +  D+V+WNS+I+G  + G+    L
Sbjct: 196 VKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAAL 255

Query: 63  KLFDKM-------------------PQRND---------------------VSWNSILGG 82
           K+F  M                    Q  D                     ++ N+I+  
Sbjct: 256 KMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDM 315

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD-LEPNSAI 141
             +  +++ A R+F+ MP +  VSW  LI+G+ QNG   EA+  +  MQ  + L+     
Sbjct: 316 YAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGT 375

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
            VS+L A + LGAL  G  +++   K  + +D  +   LID+YAKCG +  AM +F    
Sbjct: 376 FVSVLPAYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMP 435

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
            +    + + I GL ++GH  EA  LF  M+ +GI PD ++++++L+ACSH G V++G  
Sbjct: 436 RRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQGRS 495

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           +F  M   + I P   HYACM D+LGRAG L+EA NFI +MP+KPD+ +WG LLGACR+H
Sbjct: 496 FFDVMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDSAVWGALLGACRIH 555

Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
            N EMG+     L E D  + G Y+L+SN+Y +  K +  +EVR  +R++ +++ PG S 
Sbjct: 556 GNVEMGKVASQNLFELDPENVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSS 615

Query: 382 IELDGVVHEFLAGDRS--HEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETV 439
           IE+   V+ F +G+++  H + +EI      ++ KI++ GY  +   V+ D+E++EKE +
Sbjct: 616 IEVKRSVNVFYSGNQTEPHPQHEEIQAELRSLLAKIRSVGYVSDYSFVLQDVEDDEKEHI 675

Query: 440 IGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHH 499
           +  HSE+LA+AFG+I T   + + I KN+R+C DCH+A K +S++ +R+I +RD   +HH
Sbjct: 676 LNNHSERLAIAFGIINTPSRTPLHIYKNLRVCGDCHNATKYISQITEREIIVRDSNRFHH 735

Query: 500 FEDGSCSCLEYW 511
           F+DG CSC ++W
Sbjct: 736 FKDGHCSCGDFW 747



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/352 (28%), Positives = 169/352 (48%), Gaps = 43/352 (12%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ 70
           VF   SL+  Y   GR+ +A  VFDE  + DV +WN+M++G  RN    E + LF +M  
Sbjct: 103 VFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVG 162

Query: 71  R----NDVSWNSILGGLV-----------------------------------RFGSVDD 91
                + V+ +S+L   V                                   + G +++
Sbjct: 163 EGVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEE 222

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           A  VF+ M  R LV+W  +ISG  Q G+   AL +F+ M+   + P+   LVSL SA AQ
Sbjct: 223 AQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQ 282

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCA-ALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
            G       ++ Y+ ++   +D I+   A++DMYAK  +I+ A ++F S   +D  ++ +
Sbjct: 283 GGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNT 342

Query: 211 AIFGLAMNGHSIEAFELFENM-KSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDV 269
            I G   NG + EA E + +M K +G+     ++++VL A SHLG +++G    H++   
Sbjct: 343 LITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGM-RMHALSIK 401

Query: 270 HGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            G+  ++    C++DL  + G L EA      MP +     W  ++    VH
Sbjct: 402 IGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGP-WNAIISGLGVH 452



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 134/271 (49%), Gaps = 15/271 (5%)

Query: 78  SILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEP 137
           S++   +RFG + +A +VF++M +R + +W  ++SG  +N R  EA+ LF  M    +  
Sbjct: 108 SLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAG 167

Query: 138 NSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVF 197
           ++  + S+L  C  LG       ++ Y  K  +  +  +C ALID+Y K G ++ A  VF
Sbjct: 168 DTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVF 227

Query: 198 HSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVE 257
           H    +D+  + S I G    G +  A ++F+ M+  G+SPD ++ +++ SA +  G   
Sbjct: 228 HGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGR 287

Query: 258 KG----FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGT 313
                  Y     +DV  I         +VD+  +   +E A+    SMP++ D+V W T
Sbjct: 288 SAKSLHCYVMRRGWDVDDIIAG----NAIVDMYAKLSNIEAAQRMFDSMPVQ-DSVSWNT 342

Query: 314 LL-GACRVHRNAEMGQRIGNMLIESDQNHDG 343
           L+ G  +     E  +R G+M     Q H+G
Sbjct: 343 LITGYMQNGLANEAVERYGHM-----QKHEG 368


>gi|297733830|emb|CBI15077.3| unnamed protein product [Vitis vinifera]
          Length = 804

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 212/549 (38%), Positives = 307/549 (55%), Gaps = 73/549 (13%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           KN       +  +LI  Y+ CGR+  AR VFD     D+++W SMI+G   +G   E L 
Sbjct: 288 KNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDLLTWTSMISGLSMHGLGAECLW 347

Query: 64  LFDKMP----QRNDVSWNSIL-----GGLVR----------------------------- 85
            F +M     + +D++   +L      GLV                              
Sbjct: 348 TFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEEIVHGMVVKSGFESNLYVGNSVINMCSV 407

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGR-PKEALALFREMQSLD-LEPNSAILV 143
           F  ++DA +VFNQM +R + SW  L+ G+A++G   + +L  F  M   D + PN A+LV
Sbjct: 408 FARMEDARKVFNQMSERDVFSWTSLLGGYAKHGEMDRASLTFFCNMLCDDRVNPNEAVLV 467

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
            +LSACA LGALD GNW++ YI K  I+  S +  ALIDMYAKCG ID A +VF+    +
Sbjct: 468 CVLSACAHLGALDQGNWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDCASRVFNGICKR 527

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           DV ++TS I GL+ +G   +A                                 +G    
Sbjct: 528 DVLSFTSMISGLSYHGLGKDAL--------------------------------RGSSIL 555

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
            +M  + GI P+++HY C +DLLGRAG LE A   + +MPM+PD VIW  LL A R+H N
Sbjct: 556 ANMESLWGIAPKIEHYGCYIDLLGRAGYLERALEVVKTMPMEPDIVIWRALLSASRIHHN 615

Query: 324 AEMGQRIGNMLIE-SDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
             +G++I + + +    +H+G  +LLSN+Y    + E   E+RK M  R+ + +PGCS I
Sbjct: 616 VNLGEQIISHIGQLKSSDHNGGEVLLSNLYASLGRWERVTEMRKLMVDRRSESSPGCSWI 675

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E++G+VHEF   D+ H +  EI     EI+K++   GY+  T  V FD+ EEEKE  + +
Sbjct: 676 EVNGLVHEFRVADQLHPQIVEIRNKLNEILKRLSQIGYSANTMQVSFDLNEEEKEQAVAW 735

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSEKLA+AFGL+ T+PG++IRIVKN+R C DCHSA+K +S+V+ R+I +RDR  +H F +
Sbjct: 736 HSEKLAIAFGLMSTEPGTLIRIVKNLRTCEDCHSALKTISQVYGREIVVRDRSRFHTFIE 795

Query: 503 GSCSCLEYW 511
           G CSC ++W
Sbjct: 796 GDCSCKDFW 804



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 121/365 (33%), Positives = 170/365 (46%), Gaps = 48/365 (13%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLD-VVSWNSMINGYVRNGEILE 60
           VV +  A +  +   LI  Y  C  +  AR VFD+   L   + WN MI  Y +     E
Sbjct: 78  VVTHGLAQNTSLLGPLIHSYIGCRNLSFARIVFDQFPSLPPTIIWNLMIQAYSKTPSSQE 137

Query: 61  GLKLFDKM-----PQRND-------------------------------------VSWNS 78
            L LF +M     P   D                                        NS
Sbjct: 138 SLYLFHQMLAHGRPTSADKYTFTFVFTACSRHPTLRGYGENVHGMVVKDGYESDIFVGNS 197

Query: 79  ILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGR-PKEALALFREMQSLD-LE 136
           ++     F  + DA RVF++MP+R +++W  ++ G+A  G    EAL  F +M   D ++
Sbjct: 198 LVNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKGYAMRGEFYNEALQCFNDMLCHDEVK 257

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
           PN A+LVS+LSACA LGALD G W++ YI K  I L S +  ALIDMYAKCG ID A +V
Sbjct: 258 PNEAVLVSILSACAHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRV 317

Query: 197 FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWV 256
           F     +D+  +TS I GL+M+G   E    F  M ++G  PD I+ + VL+ CSH G V
Sbjct: 318 FDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLV 377

Query: 257 EKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLG 316
           E+     H M    G +  L     ++++      +E+A      M  + D   W +LLG
Sbjct: 378 EEEI--VHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMSER-DVFSWTSLLG 434

Query: 317 ACRVH 321
               H
Sbjct: 435 GYAKH 439



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 164/338 (48%), Gaps = 45/338 (13%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEIL- 59
           MVVK+ +  D+FV NSL+  YS+  R+ DA+ VFDE    DV++W S++ GY   GE   
Sbjct: 182 MVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKGYAMRGEFYN 241

Query: 60  EGLKLFDKMPQRNDVSWN-----SILGGLVRFGSVDD----------------------- 91
           E L+ F+ M   ++V  N     SIL      G++D                        
Sbjct: 242 EALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQGKWIHVYIDKNRILLSSNISTAL 301

Query: 92  ------------ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS 139
                       A RVF+ + KR L++W  +ISG + +G   E L  F EM +   +P+ 
Sbjct: 302 IDMYAKCGRIDCARRVFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDD 361

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
             L+ +L+ C+  G ++    V+  + K   + +  +  ++I+M +    ++ A +VF+ 
Sbjct: 362 ITLLGVLNGCSHSGLVEE-EIVHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQ 420

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEA-FELFENMKSKG-ISPDSISYIAVLSACSHLGWVE 257
             ++DV ++TS + G A +G    A    F NM     ++P+    + VLSAC+HLG ++
Sbjct: 421 MSERDVFSWTSLLGGYAKHGEMDRASLTFFCNMLCDDRVNPNEAVLVCVLSACAHLGALD 480

Query: 258 KGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA 295
           +G  + H   D  GI+   +    ++D+  + G ++ A
Sbjct: 481 QG-NWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDCA 517


>gi|116792842|gb|ABK26521.1| unknown [Picea sitchensis]
          Length = 370

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 176/370 (47%), Positives = 249/370 (67%)

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           +  +L ACA + AL+ G  V++ I K   +LD  +   L+DMY KCG I+ A +VF    
Sbjct: 1   MAGILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLL 60

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
           + DV+++ + I GLA +G   EA  LFE M   G+ P+ I+++ VLS CSH G V++G  
Sbjct: 61  EPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRN 120

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           YF SM   HGI P+ +HY+CMVDL GRAG L+EA NFI  MP++P+  +WG+LLGACRVH
Sbjct: 121 YFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVH 180

Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
            N E+ +R    LIE    + G Y+LLSNIY    + ++A +VRK M+ R +K+ PGCS 
Sbjct: 181 GNIELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGCSW 240

Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIG 441
           IE+   VH F+ GD SH + +EIY+  E +  ++K  GY   T  V+ D+EEE+KE ++G
Sbjct: 241 IEVQNKVHPFIVGDSSHPQIEEIYETLETLTLQMKAAGYIPNTNFVLHDVEEEQKEWILG 300

Query: 442 YHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
           +HSEKLA+AFG+I T PG+ IR+VKN+R+C DCH+A K +S++  R+I +RD   +HHF+
Sbjct: 301 HHSEKLAIAFGIISTPPGTTIRVVKNLRVCGDCHTATKFISRIVSREIVLRDTHRFHHFK 360

Query: 502 DGSCSCLEYW 511
           DG CSC +YW
Sbjct: 361 DGQCSCGDYW 370



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 86/164 (52%), Gaps = 12/164 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K  F  DV V N L+  Y  CGR+ DA+ VF +  + DV SWN+MI+G  ++G   E 
Sbjct: 24  IIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPDVASWNAMISGLAQHGCGKEA 83

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLIS 112
           + LF++M Q     N +++  +L G    G VD+    F+ M +   +S     +  ++ 
Sbjct: 84  VLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFDSMTRDHGISPKAEHYSCMVD 143

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALD 156
            F + G   EAL    +M    +EPN+++  SLL AC   G ++
Sbjct: 144 LFGRAGCLDEALNFINQMP---VEPNASVWGSLLGACRVHGNIE 184



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 68/122 (55%), Gaps = 5/122 (4%)

Query: 78  SILGGLV----RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL 133
           S+  GLV    + G ++DA  VF+++ +  + SW  +ISG AQ+G  KEA+ LF +M   
Sbjct: 34  SVSNGLVDMYGKCGRIEDAQEVFSKLLEPDVASWNAMISGLAQHGCGKEAVLLFEQMLQT 93

Query: 134 DLEPNSAILVSLLSACAQLGALDYG-NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDL 192
            ++PN    V +LS C+  G +D G N+  S  +   I   +   + ++D++ + G +D 
Sbjct: 94  GVKPNQITFVVVLSGCSHAGLVDEGRNYFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDE 153

Query: 193 AM 194
           A+
Sbjct: 154 AL 155


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 202/516 (39%), Positives = 303/516 (58%), Gaps = 8/516 (1%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFD---ESDDLDVVSWNSMINGYVRNGEI 58
           +V +    D F   S+I+  +  G ++  + V       +D      NS+++ Y + G+ 
Sbjct: 277 MVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHFDNSLVSLYYKCGKF 336

Query: 59  LEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNG 118
            E   +F+KMP ++ VSWN++L G V  G + +A  +F +M +++++SW+++ISG A+NG
Sbjct: 337 DEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENG 396

Query: 119 RPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCA 178
             +E L LF  M+    EP        + +CA LGA   G   ++ + K  I  DS L A
Sbjct: 397 FGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLK--IGFDSSLSA 454

Query: 179 --ALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGI 236
             ALI MYAKCG ++ A QVF +    D  ++ + I  L  +GH  EA +++E M  KGI
Sbjct: 455 GNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGI 514

Query: 237 SPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAE 296
            PD I+ + VL+ACSH G V++G  YF SM  V+ I P  DHYA ++DLL R+G   +AE
Sbjct: 515 RPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAE 574

Query: 297 NFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETL 356
           + I S+P KP   IW  LL  CRVH N E+G    + L      HDG Y+LLSN++  T 
Sbjct: 575 SVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATG 634

Query: 357 KGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIK 416
           + E    VRK MR R +K+   CS IE++  VH FL  D SH + + +Y + +++ K+++
Sbjct: 635 QWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMR 694

Query: 417 NYGYNVETRSVMFDIEEE-EKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCH 475
             GY  +T  V+ D+E +  KE ++  HSEK+A+AFGL+   PG+ IRI KN+R C DCH
Sbjct: 695 RLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCH 754

Query: 476 SAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           +  + +S V +R I +RDRK +HHF +G CSC  +W
Sbjct: 755 NFFRFLSWVVQRDIILRDRKRFHHFRNGECSCGNFW 790



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 130/294 (44%), Gaps = 41/294 (13%)

Query: 63  KLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKR-SLVSWVVLISGFAQNGRPK 121
           K+FD++ ++++ SW +++ G V+ G  D    +   M     LV++  +ISG+   G  +
Sbjct: 209 KVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQ 268

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKK---CIKLDSILCA 178
           EAL + R M S  +E +     S++ ACA  G L  G  V++Y+ ++       D+    
Sbjct: 269 EALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHFDN---- 324

Query: 179 ALIDMYAKCGSIDLAMQVFHSYGDKD-------VSAYTSA-------------------- 211
           +L+ +Y KCG  D A  +F     KD       +S Y S+                    
Sbjct: 325 SLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILS 384

Query: 212 ----IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMF 267
               I GLA NG   E  +LF  MK +G  P   ++   + +C+ LG    G  Y   + 
Sbjct: 385 WMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLL 444

Query: 268 DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            + G    L     ++ +  + G++EEA     +MP   D+V W  L+ A   H
Sbjct: 445 KI-GFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCL-DSVSWNALIAALGQH 496



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 138/326 (42%), Gaps = 19/326 (5%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++   F     + N LI  Y     +  AR +FDE  + D ++  +M++GY  +G+I   
Sbjct: 40  IITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGYCASGDITLA 99

Query: 62  LKLFDKMP--QRNDVSWNSILGGLVR----FGSVDDACRVFNQMPKRSLVSWVVLISGFA 115
             +F+K P   R+ V +N+++ G       + +++  C++ ++  K    ++  +++G A
Sbjct: 100 RGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLA 159

Query: 116 QNGRPKEALALFREMQSLD----LEPNSAILVSLLSACAQLGALDY-GNWVYSYIQKKCI 170
                ++    F           +   S  LVS+ S CA   +L +    V+  I +K  
Sbjct: 160 LVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEK-- 217

Query: 171 KLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK-DVSAYTSAIFGLAMNGHSIEAFELFE 229
             D      ++  Y K G  DL  ++     D   + AY + I G    G   EA E+  
Sbjct: 218 --DERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVR 275

Query: 230 NMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRA 289
            M S GI  D  +Y +V+ AC+  G ++ G      +          D+   +V L  + 
Sbjct: 276 RMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHFDN--SLVSLYYKC 333

Query: 290 GLLEEAENFIASMPMKPDNVIWGTLL 315
           G  +EA      MP K D V W  LL
Sbjct: 334 GKFDEARAIFEKMPAK-DLVSWNALL 358


>gi|357117491|ref|XP_003560501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Brachypodium distachyon]
          Length = 652

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/468 (41%), Positives = 287/468 (61%), Gaps = 2/468 (0%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           NS+I  Y+  G++    K+FD+M  ++ + W SI+    R   +  A  VF Q P + +V
Sbjct: 185 NSLIGAYIACGDVGAARKVFDEMVVKDVICWTSIVVAYSRSRDMGSAEEVFGQCPVKDMV 244

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           +W  +++G+AQN  P +AL +F  M +L +  +   L   +SACAQLGA+    WV    
Sbjct: 245 AWTAMVTGYAQNAMPMKALEVFDRMTALGIGIDEVSLTGAISACAQLGAVKRAAWVQEIA 304

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
           +     ++ ++ + L+DMYAKCG ID A +VF    +K+V  Y+S + GLA +G + EA 
Sbjct: 305 EMNGFGMNVVVGSGLVDMYAKCGLIDEACKVFDGMQEKNVYTYSSMVVGLASHGRAREAI 364

Query: 226 ELFENMKSKG-ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVD 284
            LF++M  +  ++P+ +++I VL+ACSH G V  G YYF  M D +GI P  DHY CMVD
Sbjct: 365 ALFKDMVRRADVAPNHVTFIGVLTACSHAGMVTDGRYYFAQMKDKYGILPSADHYTCMVD 424

Query: 285 LLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGR 344
           LLGRAGL++EA + + SM ++P   +WG LLGACR+H   E+ +     L + +    G 
Sbjct: 425 LLGRAGLVDEALDLVRSMTVEPHGGVWGALLGACRIHGKTEVAKVAAEHLFKLEPEGIGN 484

Query: 345 YILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE-LDGVVHEFLAGDRSHEKTQE 403
           Y+LLSN      K +   +VRK MR R++K+ P  S  E  DG+VH+F AGD SH +T+E
Sbjct: 485 YVLLSNTLAAAGKWDEVSKVRKVMRSRRLKKVPAVSWFEGRDGLVHQFFAGDNSHPRTRE 544

Query: 404 IYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIR 463
           I +   E+V K+K+ GY     S+++D+  EEKE ++  HSEKLAL FGL+       IR
Sbjct: 545 IKKALLELVAKLKHAGYVPILSSIVYDVSNEEKERLLMGHSEKLALLFGLLTLGSRCTIR 604

Query: 464 IVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           IVKN+RIC DCH  ++LVS+    +I +RD   +HHF+DG CSC  +W
Sbjct: 605 IVKNLRICDDCHLFIRLVSRFEPVEIIVRDNMRFHHFKDGECSCGGFW 652



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 120/262 (45%), Gaps = 76/262 (29%)

Query: 12  FVKNSLIQFYSVCGRVRDARWVFDE------------------SDDL------------- 40
           FV+NSLI  Y  CG V  AR VFDE                  S D+             
Sbjct: 182 FVENSLIGAYIACGDVGAARKVFDEMVVKDVICWTSIVVAYSRSRDMGSAEEVFGQCPVK 241

Query: 41  DVVSWNSMINGYVRNGEILEGLKLFDKM-------------------------------- 68
           D+V+W +M+ GY +N   ++ L++FD+M                                
Sbjct: 242 DMVAWTAMVTGYAQNAMPMKALEVFDRMTALGIGIDEVSLTGAISACAQLGAVKRAAWVQ 301

Query: 69  --PQRNDVSWNSILG-GLV----RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
              + N    N ++G GLV    + G +D+AC+VF+ M ++++ ++  ++ G A +GR +
Sbjct: 302 EIAEMNGFGMNVVVGSGLVDMYAKCGLIDEACKVFDGMQEKNVYTYSSMVVGLASHGRAR 361

Query: 122 EALALFREM-QSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKK---CIKLDSILC 177
           EA+ALF++M +  D+ PN    + +L+AC+  G +  G + ++ ++ K       D   C
Sbjct: 362 EAIALFKDMVRRADVAPNHVTFIGVLTACSHAGMVTDGRYYFAQMKDKYGILPSADHYTC 421

Query: 178 AALIDMYAKCGSIDLAMQVFHS 199
             ++D+  + G +D A+ +  S
Sbjct: 422 --MVDLLGRAGLVDEALDLVRS 441



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 13/155 (8%)

Query: 5   NSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKL 64
           N F  +V V + L+  Y+ CG + +A  VFD   + +V +++SM+ G   +G   E + L
Sbjct: 307 NGFGMNVVVGSGLVDMYAKCGLIDEACKVFDGMQEKNVYTYSSMVVGLASHGRAREAIAL 366

Query: 65  FDKMPQRNDVSWN-----SILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLISGF 114
           F  M +R DV+ N      +L      G V D    F QM  +     S   +  ++   
Sbjct: 367 FKDMVRRADVAPNHVTFIGVLTACSHAGMVTDGRYYFAQMKDKYGILPSADHYTCMVDLL 426

Query: 115 AQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
            + G   EAL L R   S+ +EP+  +  +LL AC
Sbjct: 427 GRAGLVDEALDLVR---SMTVEPHGGVWGALLGAC 458


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 202/515 (39%), Positives = 297/515 (57%), Gaps = 40/515 (7%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP- 69
           + ++N ++  Y+ CG + DAR +FDE    D+V+W ++I G+ +N    + L LF +M  
Sbjct: 123 LVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLR 182

Query: 70  ---QRNDVSWNSILG------GL-----------------------------VRFGSVDD 91
              Q N  + +S+L       GL                              R G +D 
Sbjct: 183 LGLQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDA 242

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           A   F+ MP +S VSW  LISG A+ G  + AL L  +MQ  + +P      S+ SACA 
Sbjct: 243 AQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACAS 302

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSA 211
           +GAL+ G WV++++ K  +KL + +   L+DMYAK GSID A +VF      DV ++ + 
Sbjct: 303 IGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTM 362

Query: 212 IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG 271
           + G A +G   E  + FE M   GI P+ IS++ VL+ACSH G +++G YYF  M   + 
Sbjct: 363 LTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELM-KKYK 421

Query: 272 IKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIG 331
           ++P++ HY   VDLLGR GLL+ AE FI  MP++P   +WG LLGACR+H+N E+G    
Sbjct: 422 VEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAA 481

Query: 332 NMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEF 391
               E D +  G  +LLSNIY    +  +  +VRK M++  +K+ P CS +E++  VH F
Sbjct: 482 ERAFELDPHDSGPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLF 541

Query: 392 LAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAF 451
           +A D +H + +EI   WEEI  KIK  GY  +T  V+  ++++E+E  + YHSEKLALAF
Sbjct: 542 VANDETHPQIKEIRGKWEEISGKIKEIGYVPDTSHVLLFVDQQEREEKLQYHSEKLALAF 601

Query: 452 GLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFK 486
            L+ T  GS IRI KNIR+C DCH+A+K VSK+++
Sbjct: 602 ALLNTPTGSPIRIKKNIRVCGDCHAAIKFVSKIYE 636



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 88/271 (32%), Positives = 140/271 (51%), Gaps = 2/271 (0%)

Query: 51  GYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVL 110
           G V  G I+    +       + V  N I+    + G +DDA R+F++MP + +V+W  L
Sbjct: 101 GKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTAL 160

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCI 170
           I+GF+QN RP++AL LF +M  L L+PN   L SLL A      LD G  ++++  K   
Sbjct: 161 IAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGY 220

Query: 171 KLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFEN 230
           +    + +AL+DMYA+CG +D A   F     K   ++ + I G A  G    A  L   
Sbjct: 221 QSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWK 280

Query: 231 MKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAG 290
           M+ K   P   +Y +V SAC+ +G +E+G  + H+     G+K        ++D+  +AG
Sbjct: 281 MQRKNFQPTHFTYSSVFSACASIGALEQG-KWVHAHMIKSGLKLIAFIGNTLLDMYAKAG 339

Query: 291 LLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            +++A+     + +KPD V W T+L  C  H
Sbjct: 340 SIDDAKRVFDRL-VKPDVVSWNTMLTGCAQH 369



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 115/251 (45%), Gaps = 39/251 (15%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +K  +   V+V ++L+  Y+ CG +  A+  FD       VSWN++I+G+ R GE    L
Sbjct: 216 LKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHAL 275

Query: 63  KLFDKMPQRN----------------------DVSW-----------------NSILGGL 83
            L  KM ++N                         W                 N++L   
Sbjct: 276 HLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMY 335

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
            + GS+DDA RVF+++ K  +VSW  +++G AQ+G  KE L  F +M  + +EPN    +
Sbjct: 336 AKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFL 395

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
            +L+AC+  G LD G + +  ++K  ++ D       +D+  + G +D A +       +
Sbjct: 396 CVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIE 455

Query: 204 DVSAYTSAIFG 214
             +A   A+ G
Sbjct: 456 PTAAVWGALLG 466



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 15/180 (8%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K+      F+ N+L+  Y+  G + DA+ VFD     DVVSWN+M+ G  ++G   E 
Sbjct: 316 MIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKET 375

Query: 62  LKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPK----RSLVSWVVLISG 113
           L  F++M     + N++S+  +L      G +D+    F  M K      +  +V  +  
Sbjct: 376 LDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDL 435

Query: 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD 173
             + G    A    REM    +EP +A+  +LL AC     ++ G     Y  ++  +LD
Sbjct: 436 LGRVGLLDRAERFIREM---PIEPTAAVWGALLGACRMHKNMELG----VYAAERAFELD 488


>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 210/557 (37%), Positives = 308/557 (55%), Gaps = 49/557 (8%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +V + F  D F+   LI  Y   G +  A  VFDE+ +  +  WN++       G   E 
Sbjct: 104 LVDSGFDQDPFLATKLINMYYELGSIDRALKVFDETRERTIYVWNALFRALAMVGHGKEL 163

Query: 62  LKLFDKM---------------------------PQR----------------NDVSWNS 78
           L L+ +M                           P R                N     +
Sbjct: 164 LDLYIQMNWIGTPSDRFTYTYVLKACVVSELSVCPLRKGKEIHAHILRHGYEANIHVMTT 223

Query: 79  ILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM--QSLDLE 136
           +L    +FGSV  A  VF  MP ++ VSW  +I+ FA+N  P +AL LF+ M  ++ +  
Sbjct: 224 LLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMFEACNSV 283

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCA--ALIDMYAKCGSIDLAM 194
           PNS  +V++L ACA L AL+ G  ++ YI ++  +LDSIL    ALI MY +CG + +  
Sbjct: 284 PNSVTMVNMLQACAGLAALEQGKLIHGYILRR--QLDSILPVLNALITMYGRCGEVLMGQ 341

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
           +VF +   +DV ++ S I    M+G   +A ++FENM  +G+SP  IS+I VL ACSH G
Sbjct: 342 RVFDNMKKRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGVSPSYISFITVLGACSHAG 401

Query: 255 WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTL 314
            VE+G   F SM   + I P ++HYACMVDLLGRA  L EA   I  M  +P   +WG+L
Sbjct: 402 LVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRLGEAIKLIEDMHFEPGPTVWGSL 461

Query: 315 LGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIK 374
           LG+CR+H N E+ +R   +L E +  + G Y+LL++IY E      A+ V K +  R ++
Sbjct: 462 LGSCRIHCNVELAERASTVLFELEPRNAGNYVLLADIYAEAKLWSEAKSVMKLLEARGLQ 521

Query: 375 RAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEE 434
           + PGCS IE+   V+ F++ D  + + +EI+    ++  ++K  GY  +T  V++D++EE
Sbjct: 522 KLPGCSWIEVKRKVYSFVSVDEHNPQIEEIHALLVKLSNEMKAQGYVPQTNVVLYDLDEE 581

Query: 435 EKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDR 494
           EKE ++  HSEKLA+AFGLI T  G  IRI KN+R+C DCH+  K +SK   R+I +RD 
Sbjct: 582 EKERIVLGHSEKLAVAFGLINTAKGETIRIRKNLRLCEDCHAVTKFISKFANREILVRDV 641

Query: 495 KHYHHFEDGSCSCLEYW 511
             +HHF DG CSC +YW
Sbjct: 642 NRFHHFRDGVCSCGDYW 658



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 95/213 (44%), Gaps = 11/213 (5%)

Query: 110 LISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC 169
           LI    + G  K+AL L       +  P       L+ +CAQ  +L YG  V+  +    
Sbjct: 53  LIQSLCKGGNLKQALHLL----CCEPNPTQQTFEHLIYSCAQKNSLSYGLDVHRCLVDSG 108

Query: 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFE 229
              D  L   LI+MY + GSID A++VF    ++ +  + +    LAM GH  E  +L+ 
Sbjct: 109 FDQDPFLATKLINMYYELGSIDRALKVFDETRERTIYVWNALFRALAMVGHGKELLDLYI 168

Query: 230 NMKSKGISPDSISYIAVLSAC--SHLGW--VEKGFYYFHSMFDVHGIKPELDHYACMVDL 285
            M   G   D  +Y  VL AC  S L    + KG    H+    HG +  +     ++D+
Sbjct: 169 QMNWIGTPSDRFTYTYVLKACVVSELSVCPLRKG-KEIHAHILRHGYEANIHVMTTLLDV 227

Query: 286 LGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
             + G +  A +   +MP K + V W  ++ AC
Sbjct: 228 YAKFGSVSYANSVFCAMPTK-NFVSWSAMI-AC 258


>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
 gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 624

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/549 (35%), Positives = 315/549 (57%), Gaps = 39/549 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +  N    ++ V N L+  Y   G + DA+ +FD        SW+ ++ GY + G     
Sbjct: 76  IATNGAFRNLAVANKLLYMYVERGALEDAQELFDGMSKRHPYSWSVIVGGYAKVGNFFSC 135

Query: 62  LKLFDKMPQR----NDVSWNSIL-----------GGLV---------------------- 84
             +F ++ +     +D S   ++           G L+                      
Sbjct: 136 FWMFRELLRSGAPLDDYSAPVVIRACRDLKDLKCGRLIHCITLKCGLDYGHFVCATLVDM 195

Query: 85  --RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             R   V+DA ++F +M KR L +W V+I   A++G P E+L  F  M++  + P+   L
Sbjct: 196 YARCKVVEDAHQIFVKMWKRDLATWTVMIGALAESGVPVESLVFFDRMRNQGIVPDKVAL 255

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           V+++ ACA+LGA++    +++YI      LD IL  A+IDMYAKCGS++ A  +F     
Sbjct: 256 VTVVYACAKLGAMNKAKAIHAYINGTGYSLDVILGTAMIDMYAKCGSVESARWIFDRMQV 315

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           ++V  +++ I     +G   +A ELF  M   GI P+ I+++++L ACSH G +E+G  +
Sbjct: 316 RNVITWSAMIAAYGYHGQGEKALELFPMMLRSGILPNRITFVSLLYACSHAGLIEEGQRF 375

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F SM+D +G+ P++ HY CMVDLLGRAG L+EA   I  MP++ D V+WG LLGACR+HR
Sbjct: 376 FSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEALEMIEGMPVEKDEVLWGALLGACRIHR 435

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           + ++ +R+   L++      G Y+LLSNIY    K E+  + R  M K  +++ PG + I
Sbjct: 436 HLDLAERVARSLLKLQSQKPGHYVLLSNIYANAGKWEDMAKTRDLMTKGGLRKIPGRTWI 495

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E+   +++F  GD++H ++ EIY+  + + +K++  GY+ +T  V++D++EE K+ ++  
Sbjct: 496 EVGEKLYQFGVGDKTHPRSNEIYKMLKRLGEKLEVAGYHPDTNDVLYDVDEEVKQGLLYS 555

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSEKLA+AFGL+    G  IRI KN+R+C DCH+  K VS + ++ I +RD K +HHF++
Sbjct: 556 HSEKLAIAFGLLVLPQGHPIRITKNLRVCGDCHTFCKFVSLIEQKTIIVRDAKRFHHFKE 615

Query: 503 GSCSCLEYW 511
           G CSC +YW
Sbjct: 616 GVCSCRDYW 624



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 132/337 (39%), Gaps = 82/337 (24%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + +K    Y  FV  +L+  Y+ C  V DA  +F +    D+ +W  MI     +G  +E
Sbjct: 176 ITLKCGLDYGHFVCATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAESGVPVE 235

Query: 61  GLKLFDKMPQRNDV----------------------------------SWNSILGGLV-- 84
            L  FD+M  +  V                                  S + ILG  +  
Sbjct: 236 SLVFFDRMRNQGIVPDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVILGTAMID 295

Query: 85  ---RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + GSV+ A  +F++M  R++++W  +I+ +  +G+ ++AL LF  M    + PN   
Sbjct: 296 MYAKCGSVESARWIFDRMQVRNVITWSAMIAAYGYHGQGEKALELFPMMLRSGILPNRIT 355

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
            VSLL AC+  G ++ G   +S                                ++  YG
Sbjct: 356 FVSLLYACSHAGLIEEGQRFFS-------------------------------SMWDEYG 384

Query: 202 -DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC---SHLGWVE 257
              DV  YT  +  L   G   EA E+ E M    +  D + + A+L AC    HL   E
Sbjct: 385 VTPDVKHYTCMVDLLGRAGRLDEALEMIEGMP---VEKDEVLWGALLGACRIHRHLDLAE 441

Query: 258 KGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEE 294
           +      S+  +   KP   HY  + ++   AG  E+
Sbjct: 442 R---VARSLLKLQSQKP--GHYVLLSNIYANAGKWED 473


>gi|218186365|gb|EEC68792.1| hypothetical protein OsI_37341 [Oryza sativa Indica Group]
          Length = 960

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 176/443 (39%), Positives = 277/443 (62%), Gaps = 9/443 (2%)

Query: 78  SILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQ---------NGRPKEALALFR 128
           ++LG   R G +    RVF+++    L +W  L+S +A+                L LF 
Sbjct: 518 ALLGVFARCGRIASCRRVFDRIAHPDLPAWNALLSAYARLCARDVACATSAADAILELFV 577

Query: 129 EMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCG 188
            M SL +EPN   LV+++ AC +LGA+ +G W ++Y  K+ + ++ I+  AL++MYA CG
Sbjct: 578 RMLSLAIEPNEITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVNCIVATALVEMYAGCG 637

Query: 189 SIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248
            +DLA QVF +  D+D   Y + + GLA++GH   A  L + M   G+  D ++ ++V+ 
Sbjct: 638 RLDLAEQVFAAVSDRDTRCYNAMLHGLAVHGHGRAALSLLDRMHGAGVPVDGVTVLSVMC 697

Query: 249 ACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDN 308
           AC+H G V++G  YF  M    GI+P ++HY CM+D+L RAG L  AE  I  M + P+ 
Sbjct: 698 ACAHAGLVDEGLDYFDRMEIEFGIEPRIEHYGCMIDMLSRAGQLNNAEKLIHEMLIVPNA 757

Query: 309 VIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTM 368
            I+ +L+ AC +H   E+G+++   L+  + +  G ++L+SN Y  T + E+A++ RK M
Sbjct: 758 AIYRSLIRACGIHGKLELGEKMIAELMRLEPDDSGNHVLISNFYARTNRWEDAKKARKEM 817

Query: 369 RKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVM 428
           +   I + PG SL++++GV+HEFL GD++H  ++EIY   EEI  ++   G    T S +
Sbjct: 818 KSMGIDKNPGSSLVDINGVLHEFLVGDKTHPASKEIYTMVEEIETRLIECGRRSSTSSAL 877

Query: 429 FDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRK 488
           FD+EEE+K   + YHSE+LA+AF LI + PG+ IRI+KN+R+C+DCH + KLVS+V+ R+
Sbjct: 878 FDVEEEDKADTLSYHSERLAIAFALIASNPGAPIRIIKNLRVCADCHESAKLVSRVYGRE 937

Query: 489 ISIRDRKHYHHFEDGSCSCLEYW 511
           I +RDR  +HHF DG CSC ++W
Sbjct: 938 IVMRDRTRFHHFRDGVCSCGDFW 960



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 12/165 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           VK   A +  V  +L++ Y+ CGR+  A  VF    D D   +N+M++G   +G     L
Sbjct: 615 VKRRLAVNCIVATALVEMYAGCGRLDLAEQVFAAVSDRDTRCYNAMLHGLAVHGHGRAAL 674

Query: 63  KLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMP-----KRSLVSWVVLISG 113
            L D+M       + V+  S++      G VD+    F++M      +  +  +  +I  
Sbjct: 675 SLLDRMHGAGVPVDGVTVLSVMCACAHAGLVDEGLDYFDRMEIEFGIEPRIEHYGCMIDM 734

Query: 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
            ++ G+   A  L  EM    + PN+AI  SL+ AC   G L+ G
Sbjct: 735 LSRAGQLNNAEKLIHEML---IVPNAAIYRSLIRACGIHGKLELG 776



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 60/287 (20%), Positives = 115/287 (40%), Gaps = 66/287 (22%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVR---------NGEILE 60
           D  +  +L+  ++ CGR+   R VFD     D+ +WN++++ Y R               
Sbjct: 512 DRVLGAALLGVFARCGRIASCRRVFDRIAHPDLPAWNALLSAYARLCARDVACATSAADA 571

Query: 61  GLKLFDKM----PQRNDVSWNSILGGLVRFGSV--------------------------- 89
            L+LF +M     + N+++  +++G     G+V                           
Sbjct: 572 ILELFVRMLSLAIEPNEITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVNCIVATALVE 631

Query: 90  --------DDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
                   D A +VF  +  R    +  ++ G A +G  + AL+L   M    +  +   
Sbjct: 632 MYAGCGRLDLAEQVFAAVSDRDTRCYNAMLHGLAVHGHGRAALSLLDRMHGAGVPVDGVT 691

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCI------KLDSILCAALIDMYAKCGSIDLAMQ 195
           ++S++ ACA  G +D G     Y  +  I      +++   C  +IDM ++ G ++ A +
Sbjct: 692 VLSVMCACAHAGLVDEG---LDYFDRMEIEFGIEPRIEHYGC--MIDMLSRAGQLNNAEK 746

Query: 196 VFHSYG-DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK--GISPD 239
           + H      + + Y S I    ++G      EL E M ++   + PD
Sbjct: 747 LIHEMLIVPNAAIYRSLIRACGIHG----KLELGEKMIAELMRLEPD 789



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 11/158 (6%)

Query: 173 DSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLA---------MNGHSIE 223
           D +L AAL+ ++A+CG I    +VF      D+ A+ + +   A             +  
Sbjct: 512 DRVLGAALLGVFARCGRIASCRRVFDRIAHPDLPAWNALLSAYARLCARDVACATSAADA 571

Query: 224 AFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMV 283
             ELF  M S  I P+ I+ +AV+ AC  LG V  G +  H+      +         +V
Sbjct: 572 ILELFVRMLSLAIEPNEITLVAVIGACGELGAVSHGVWA-HTYAVKRRLAVNCIVATALV 630

Query: 284 DLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           ++    G L+ AE   A++  + D   +  +L    VH
Sbjct: 631 EMYAGCGRLDLAEQVFAAVSDR-DTRCYNAMLHGLAVH 667


>gi|413934702|gb|AFW69253.1| hypothetical protein ZEAMMB73_589560 [Zea mays]
          Length = 664

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 193/468 (41%), Positives = 282/468 (60%), Gaps = 2/468 (0%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           NS+I+ YV  G++    K+FD+M  ++ +SW SI+    R   +  A  VF   P + +V
Sbjct: 197 NSLISAYVACGDVGAARKVFDEMLVKDVISWTSIVVAYSRIRDMGSAEEVFALCPVKDMV 256

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           +W  +++G+AQN  P +AL  F +M    +  +   L   +SACAQLGA+    WV    
Sbjct: 257 AWTAMVTGYAQNAMPVKALEAFEQMAVAGMPIDEVSLTGAISACAQLGAVKRAAWVQEIA 316

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
           ++  +  + ++ + L+DMYAKCG ID A +VF    DK+V  Y+S I GLA +G + +  
Sbjct: 317 ERNGLGRNVVVGSGLVDMYAKCGLIDEARKVFEGMHDKNVYTYSSMIVGLASHGRANDVI 376

Query: 226 ELFENMKSKG-ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVD 284
            LF +M  +  + P+ +++I VL+ACSH G V++G YYF  M D +GI P  DHYACMVD
Sbjct: 377 ALFNDMVRRADVEPNHVTFIGVLTACSHAGMVKEGRYYFAQMKDRYGILPSADHYACMVD 436

Query: 285 LLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGR 344
           LL R+GL+ EA + + SM ++P   +WG LLGACR+H N E+ +     L   +    G 
Sbjct: 437 LLARSGLVTEALDLVKSMTVEPHGGVWGALLGACRIHGNTEVAKIAAEHLFRLEPEGIGN 496

Query: 345 YILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE-LDGVVHEFLAGDRSHEKTQE 403
           Y+LLSN      + +   ++RK MR R +K+ P  S  E  DG VH+F AGD +H    E
Sbjct: 497 YVLLSNTLASAGEWDEVSKLRKLMRIRGLKKDPAVSWFEGRDGFVHQFFAGDNTHPSMHE 556

Query: 404 IYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIR 463
           I +   E+ +K+   GY     SV++++ EEEKE ++  HSEKLAL+FGL+  +  S IR
Sbjct: 557 IKKRLLELREKLNLAGYVPILSSVVYNVSEEEKERLLMGHSEKLALSFGLLTLESRSSIR 616

Query: 464 IVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           IVKN+RIC DCH  ++LVSKV   +I +RD   +HHF DG CSC  +W
Sbjct: 617 IVKNLRICEDCHLFIRLVSKVEPIEILVRDNMRFHHFRDGECSCGGFW 664



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 118/275 (42%), Gaps = 72/275 (26%)

Query: 12  FVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNS------------------------ 47
           FV+NSLI  Y  CG V  AR VFDE    DV+SW S                        
Sbjct: 194 FVENSLISAYVACGDVGAARKVFDEMLVKDVISWTSIVVAYSRIRDMGSAEEVFALCPVK 253

Query: 48  -------MINGYVRNGEILEGLKLFDKM-------------------------------- 68
                  M+ GY +N   ++ L+ F++M                                
Sbjct: 254 DMVAWTAMVTGYAQNAMPVKALEAFEQMAVAGMPIDEVSLTGAISACAQLGAVKRAAWVQ 313

Query: 69  --PQRNDVSWNSILG-GLV----RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
              +RN +  N ++G GLV    + G +D+A +VF  M  +++ ++  +I G A +GR  
Sbjct: 314 EIAERNGLGRNVVVGSGLVDMYAKCGLIDEARKVFEGMHDKNVYTYSSMIVGLASHGRAN 373

Query: 122 EALALFREM-QSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI-LCAA 179
           + +ALF +M +  D+EPN    + +L+AC+  G +  G + ++ ++ +   L S    A 
Sbjct: 374 DVIALFNDMVRRADVEPNHVTFIGVLTACSHAGMVKEGRYYFAQMKDRYGILPSADHYAC 433

Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFG 214
           ++D+ A+ G +  A+ +  S   +       A+ G
Sbjct: 434 MVDLLARSGLVTEALDLVKSMTVEPHGGVWGALLG 468



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 77/156 (49%), Gaps = 13/156 (8%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           +N    +V V + L+  Y+ CG + +AR VF+   D +V +++SMI G   +G   + + 
Sbjct: 318 RNGLGRNVVVGSGLVDMYAKCGLIDEARKVFEGMHDKNVYTYSSMIVGLASHGRANDVIA 377

Query: 64  LFDKMPQRNDVSWN-----SILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLISG 113
           LF+ M +R DV  N      +L      G V +    F QM  R     S   +  ++  
Sbjct: 378 LFNDMVRRADVEPNHVTFIGVLTACSHAGMVKEGRYYFAQMKDRYGILPSADHYACMVDL 437

Query: 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
            A++G   EAL L   ++S+ +EP+  +  +LL AC
Sbjct: 438 LARSGLVTEALDL---VKSMTVEPHGGVWGALLGAC 470


>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/518 (38%), Positives = 298/518 (57%), Gaps = 9/518 (1%)

Query: 2   VVKNSFAYDVFVKNSLIQ-------FYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVR 54
           ++   F  D FV  SL++        +   G+   AR+      D DVV  +S+I+ Y +
Sbjct: 95  LLSTGFHPDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSDDDVVK-SSLIDMYAK 153

Query: 55  NGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGF 114
            G    G  +FD +   N +SW +++ G  R G   +A R+F Q P R+L +W  LISG 
Sbjct: 154 FGLPDYGRAVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQTPYRNLFAWTALISGL 213

Query: 115 AQNGRPKEALALFREMQSLDLE-PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD 173
            Q+G   +A  LF EM+   +   +  +L S++ ACA L   + G  ++  +     +  
Sbjct: 214 VQSGNGVDAFHLFVEMRHEGISVTDPLVLSSVVGACANLALWELGKQMHGVVITLGYESC 273

Query: 174 SILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKS 233
             +  ALIDMYAKC  +  A  +F     KDV ++TS I G A +G + EA  L++ M  
Sbjct: 274 LFISNALIDMYAKCSDLVAAKYIFCEMCRKDVVSWTSIIVGTAQHGQAEEALALYDEMVL 333

Query: 234 KGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLE 293
            G+ P+ ++++ ++ ACSH G V KG   F +M + HGI P L HY C++DL  R+G L+
Sbjct: 334 AGVKPNEVTFVGLIHACSHAGLVSKGRTLFRTMVEDHGISPSLQHYTCLLDLFSRSGHLD 393

Query: 294 EAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYV 353
           EAEN I +MP+ PD   W  LL +C+ H N +M  RI + L+         YILLSNIY 
Sbjct: 394 EAENLIRTMPVNPDEPTWAALLSSCKRHGNTQMAVRIADHLLNLKPEDPSSYILLSNIYA 453

Query: 354 ETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVK 413
                E+  +VRK M   + K+APG S I+L    H F AG+ SH    EI     E+ +
Sbjct: 454 GAGMWEDVSKVRKLMMTLEAKKAPGYSCIDLGKGSHVFYAGETSHPMRDEIIGLMRELDE 513

Query: 414 KIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSD 473
           +++  GY  +T SV+ D++++EKE  + +HSE+LA+A+GL+   PG+VIRIVKN+R+C D
Sbjct: 514 EMRKRGYAPDTSSVLHDMDQQEKERQLFWHSERLAVAYGLLKAVPGTVIRIVKNLRVCGD 573

Query: 474 CHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           CH+ +KL+S +  R+I +RD K YHHF+DG+CSC ++W
Sbjct: 574 CHTVLKLISAITNREIYVRDAKRYHHFKDGNCSCNDFW 611



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 136/308 (44%), Gaps = 55/308 (17%)

Query: 58  ILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQN 117
           I  GL   + +P       N++L    + G + DA ++F+ +P+R  V+W  L++    +
Sbjct: 30  IKAGLNQHEPIP-------NTLLNAYGKCGLIQDALQLFDALPRRDPVAWASLLTACNLS 82

Query: 118 GRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGAL--DYGNWVYSYIQKKCIKLDSI 175
            RP  AL++ R + S    P+  +  SL+ ACA LG L    G  V++         D +
Sbjct: 83  NRPHRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSDDDV 142

Query: 176 LCAALIDMYAKCGSIDLAMQVFHSYGD-------------------------------KD 204
           + ++LIDMYAK G  D    VF S                                  ++
Sbjct: 143 VKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQTPYRN 202

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGIS-PDSISYIAVLSACSHLGWVEKGFYYF 263
           + A+T+ I GL  +G+ ++AF LF  M+ +GIS  D +   +V+ AC++L   E G    
Sbjct: 203 LFAWTALISGLVQSGNGVDAFHLFVEMRHEGISVTDPLVLSSVVGACANLALWELG---- 258

Query: 264 HSMFDVHGIKPELDHYAC------MVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
                +HG+   L + +C      ++D+  +   L  A+     M  K D V W +++  
Sbjct: 259 ---KQMHGVVITLGYESCLFISNALIDMYAKCSDLVAAKYIFCEMCRK-DVVSWTSIIVG 314

Query: 318 CRVHRNAE 325
              H  AE
Sbjct: 315 TAQHGQAE 322


>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 184/424 (43%), Positives = 270/424 (63%)

Query: 88  SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLS 147
           S+ DA ++F++MP+R+ V+W  LI+G+  N +  +A+  FR M +   +P+   +V +LS
Sbjct: 139 SISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLS 198

Query: 148 ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSA 207
           AC+ LGA + G W++ +I    ++L+  +  ALIDMYAKCG++    +VF    +K+V  
Sbjct: 199 ACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYT 258

Query: 208 YTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMF 267
           +   I G AMNG    A + F  M  +   PD ++++ VL AC H G V +G + F SM 
Sbjct: 259 WNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMK 318

Query: 268 DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMG 327
              G++P ++HY CMVDLLGRAGLLEEA   I SM ++PD +IW  LL ACRVH N ++G
Sbjct: 319 QQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLG 378

Query: 328 QRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGV 387
           + I   LIE + N+   Y+LLSNIY    +     ++R  M  R I++ PGCS IE++ V
Sbjct: 379 EYIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMNLRGIRKVPGCSSIEINNV 438

Query: 388 VHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKL 447
           V+EF+A +    + + IY+  + ++KK+K  GY   T   ++DIE+EEKE  + YHSEKL
Sbjct: 439 VYEFVASNDRKPEFEAIYKQLDNLIKKLKENGYVTGTDMALYDIEKEEKEHSVMYHSEKL 498

Query: 448 ALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSC 507
           ALAFGL+ +     +RIVKN+RIC DCH   K++S V+KR I +RDR  +HHF +G CSC
Sbjct: 499 ALAFGLLNSPLDCTLRIVKNLRICLDCHEFFKVLSLVYKRYIVVRDRNRFHHFYEGFCSC 558

Query: 508 LEYW 511
            +YW
Sbjct: 559 RDYW 562



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 118/278 (42%), Gaps = 10/278 (3%)

Query: 67  KMPQRNDVSWNSILGGL----VRFGSVDDACRVFNQMPKRSLVSWVV--LISGFAQNGRP 120
           K+P  NDV     L  L    V     +   R+F++  + S+ S     +I  +    + 
Sbjct: 12  KIPDYNDVRRGHFLMKLIDDSVSRNGFESIARIFSKY-RGSINSQQCNSMIRTYLDLNKH 70

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
             +L +F  M    + P+S+   ++L A AQL     G  ++  + +     D     AL
Sbjct: 71  LNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQMGFICDVYTSTAL 130

Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           + +Y  C SI  A Q+F    +++   + + I G   N   ++A + F  M + G  P  
Sbjct: 131 VHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSE 190

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
            + + VLSACSHLG   +G  + H     + ++  +     ++D+  + G + E E    
Sbjct: 191 RTVVVVLSACSHLGAFNQG-KWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFE 249

Query: 301 SMPMKPDNVIWGTLLGACRVHRNAEMG-QRIGNMLIES 337
            +  K +   W  L+    ++   +   Q    ML+E+
Sbjct: 250 EIREK-NVYTWNVLISGYAMNGQGDAALQAFSRMLMEN 286



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 87/181 (48%), Gaps = 16/181 (8%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +  N    +VFV  +LI  Y+ CG V +   VF+E  + +V +WN +I+GY  NG+    
Sbjct: 216 IYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAA 275

Query: 62  LKLFDKMPQRN----DVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLIS 112
           L+ F +M   N    +V++  +L      G V +    F  M ++      +  +  ++ 
Sbjct: 276 LQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVD 335

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKL 172
              + G  +EAL L   +QS+ +EP+  I  +LL AC   G    G     YI K+ I+L
Sbjct: 336 LLGRAGLLEEALEL---IQSMSIEPDPIIWRALLCACRVHGNTKLG----EYIIKRLIEL 388

Query: 173 D 173
           +
Sbjct: 389 E 389


>gi|357141866|ref|XP_003572374.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Brachypodium distachyon]
          Length = 642

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 212/538 (39%), Positives = 311/538 (57%), Gaps = 39/538 (7%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVR-NGEILEGLKLFDKMP 69
           +FV NSL+  Y+  G + DA  +F      +VVSW +++       G   E L+   +M 
Sbjct: 107 LFVSNSLVSMYAKFGMLDDALELFGGMPQRNVVSWTTVVAALANAPGRKKEALRFLVEMR 166

Query: 70  Q----RNDVSWNSILG------------------GL--------------VRFGSVDDAC 93
           +     N  +++S+LG                  GL              ++ G +D   
Sbjct: 167 RDGVAANSYTFSSVLGACGTPGVLAAMHADIIKVGLDSDVFVRSSLIDAYMKLGDLDSGR 226

Query: 94  RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153
            VF++M    LV W  +I+GFAQ+G    A+ LF  M+      N   L S+L AC  + 
Sbjct: 227 GVFDEMVTCDLVVWNSIIAGFAQSGDGVGAMELFMRMKESGFLANQGTLTSVLRACTGMV 286

Query: 154 ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIF 213
            L+ G  V++++ K     D IL  AL+DMY KCG +  A  +F    D+DV ++++ I 
Sbjct: 287 MLEVGRQVHAHVLK--YDRDLILHNALLDMYCKCGCLLDADALFSRMHDRDVISWSTMIS 344

Query: 214 GLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIK 273
           GLA NG S+EA ++F+ MK++G +P++I+ + VL ACSH G VE G++YF SM  + GI+
Sbjct: 345 GLAQNGRSVEALKVFDLMKAEGPTPNNITMVGVLFACSHAGLVEDGWHYFRSMDKLFGIQ 404

Query: 274 PELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNM 333
           PE +H  CMVDLLGRAG L+EA  FI  M  +PD+VIW TLLGACR+H+NA +       
Sbjct: 405 PEREHCNCMVDLLGRAGKLDEAMKFIGEMKFEPDSVIWRTLLGACRMHKNATLASYAATE 464

Query: 334 LIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLA 393
           +++ +    G  ILLSNIY +  +  NAE+  KTMR + +K+ PG S IEL  +VH F+A
Sbjct: 465 ILKLEPEDQGARILLSNIYADLRQWSNAEKSWKTMRDQGVKKEPGRSWIELGKLVHVFIA 524

Query: 394 GDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGL 453
           G+ SH  +  I Q    ++++ K+ GY  +T  V+ D+  E+KE ++ YHSEKLA+AFG 
Sbjct: 525 GELSHPCSDRIVQELNRLIRRAKDLGYVPQTEFVLQDLGTEQKEDLLKYHSEKLAIAFGT 584

Query: 454 ICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           + +  G  +RI+KN+RIC DCH+  KLVSK   + I IRD   +HHF+ G CSC +YW
Sbjct: 585 MNSMEGKPVRIMKNLRICGDCHAFAKLVSKTEGKAIIIRDPVRFHHFQHGVCSCGDYW 642



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 113/233 (48%), Gaps = 40/233 (17%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K     DVFV++SLI  Y   G +   R VFDE    D+V WNS+I G+ ++G+ +  
Sbjct: 197 IIKVGLDSDVFVRSSLIDAYMKLGDLDSGRGVFDEMVTCDLVVWNSIIAGFAQSGDGVGA 256

Query: 62  LKLFDKMPQ-------------------------------------RNDVSWNSILGGLV 84
           ++LF +M +                                     R+ +  N++L    
Sbjct: 257 MELFMRMKESGFLANQGTLTSVLRACTGMVMLEVGRQVHAHVLKYDRDLILHNALLDMYC 316

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
           + G + DA  +F++M  R ++SW  +ISG AQNGR  EAL +F  M++    PN+  +V 
Sbjct: 317 KCGCLLDADALFSRMHDRDVISWSTMISGLAQNGRSVEALKVFDLMKAEGPTPNNITMVG 376

Query: 145 LLSACAQLGALDYGNWVYSYIQKKC--IKLDSILCAALIDMYAKCGSIDLAMQ 195
           +L AC+  G ++ G W Y     K   I+ +   C  ++D+  + G +D AM+
Sbjct: 377 VLFACSHAGLVEDG-WHYFRSMDKLFGIQPEREHCNCMVDLLGRAGKLDEAMK 428



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 78/151 (51%), Gaps = 16/151 (10%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM- 68
           D+ + N+L+  Y  CG + DA  +F    D DV+SW++MI+G  +NG  +E LK+FD M 
Sbjct: 304 DLILHNALLDMYCKCGCLLDADALFSRMHDRDVISWSTMISGLAQNGRSVEALKVFDLMK 363

Query: 69  ---PQRNDVSWNSILGGLVRFGSVDDACRVFNQM-------PKRSLVSWVVLISGFAQNG 118
              P  N+++   +L      G V+D    F  M       P+R   + +V + G A  G
Sbjct: 364 AEGPTPNNITMVGVLFACSHAGLVEDGWHYFRSMDKLFGIQPEREHCNCMVDLLGRA--G 421

Query: 119 RPKEALALFREMQSLDLEPNSAILVSLLSAC 149
           +  EA+    EM+    EP+S I  +LL AC
Sbjct: 422 KLDEAMKFIGEMK---FEPDSVIWRTLLGAC 449


>gi|387169524|gb|AFJ66185.1| hypothetical protein 11M19.3 [Arabidopsis halleri]
          Length = 511

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 191/437 (43%), Positives = 287/437 (65%), Gaps = 6/437 (1%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL-DL 135
           N I+  L++ G    A +V      +++++W ++I G+ +N + +EAL   + M S  D+
Sbjct: 79  NLIIESLMKIGESSLAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKTLKNMLSFSDI 138

Query: 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ 195
           +PN     S L+ACA+LG L +  WV+S +    I+L++IL +AL+D+YAKCG I+ + +
Sbjct: 139 KPNKFSFASSLAACARLGDLHHAKWVHSLMIDAGIELNAILSSALVDVYAKCGDIETSRE 198

Query: 196 VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGW 255
           VF+S    DVS + + I G A +G + EA  +F  M+++ +SPDSI+++ +L+ACSH G 
Sbjct: 199 VFYSVKRNDVSIWNAMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTACSHCGL 258

Query: 256 VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
           + KG  YF  M     I+P+L+HY  MVDLLGRAG ++EA   I SMP++PD VIW +LL
Sbjct: 259 LGKGKVYFDIMSQRFSIQPKLEHYGAMVDLLGRAGRVKEAYELIESMPIEPDVVIWRSLL 318

Query: 316 GACRVHRNAEMGQ-RIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIK 374
            + R ++N E+G+  I N+     +   G Y+LLSNIY  T K E+A++VR+ M K  I+
Sbjct: 319 SSSRTYKNPELGEIAIQNL----SKAKSGDYVLLSNIYSTTKKWESAQKVRELMTKEGIR 374

Query: 375 RAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEE 434
           +A G S +E  GV+H F AGD SH + + IY+  E +++K K+ G+  +T  V+ D+ EE
Sbjct: 375 KAKGKSWVEYGGVIHRFKAGDTSHIEIKAIYKVLEGLIQKTKSEGFVSDTDLVLMDVSEE 434

Query: 435 EKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDR 494
           EKE  + YHSEKLALA+ ++ + PG+ IRI KNIR+CSDCH+ +K VSK+  R I +RDR
Sbjct: 435 EKEENLNYHSEKLALAYVILKSSPGTEIRIQKNIRMCSDCHNWIKAVSKLLNRVIIMRDR 494

Query: 495 KHYHHFEDGSCSCLEYW 511
             +H FEDG CSC +YW
Sbjct: 495 IRFHRFEDGLCSCKDYW 511



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 98/236 (41%), Gaps = 43/236 (18%)

Query: 6   SFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLF 65
           S +  V   N +I+     G    A+ V   + D +V++WN MI GYVRN +  E LK  
Sbjct: 70  SLSPGVCNTNLIIESLMKIGESSLAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKTL 129

Query: 66  DKMPQRNDV-----SWNSILGGLVRF---------------------------------- 86
             M   +D+     S+ S L    R                                   
Sbjct: 130 KNMLSFSDIKPNKFSFASSLAACARLGDLHHAKWVHSLMIDAGIELNAILSSALVDVYAK 189

Query: 87  -GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
            G ++ +  VF  + +  +  W  +I+GFA +G   EA+ +F EM++  + P+S   + L
Sbjct: 190 CGDIETSREVFYSVKRNDVSIWNAMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGL 249

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSIL--CAALIDMYAKCGSIDLAMQVFHS 199
           L+AC+  G L  G  VY  I  +   +   L    A++D+  + G +  A ++  S
Sbjct: 250 LTACSHCGLLGKGK-VYFDIMSQRFSIQPKLEHYGAMVDLLGRAGRVKEAYELIES 304



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 80/160 (50%), Gaps = 18/160 (11%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +++      +  + ++L+  Y+ CG +  +R VF      DV  WN+MI G+  +G   E
Sbjct: 167 LMIDAGIELNAILSSALVDVYAKCGDIETSREVFYSVKRNDVSIWNAMITGFATHGLATE 226

Query: 61  GLKLFDKMPQRNDVSWNSI--LG--------GLVRFGSV--DDACRVFNQMPKRSLVSWV 108
            +++F +M +   VS +SI  LG        GL+  G V  D   + F+  PK  L  + 
Sbjct: 227 AIRVFSEM-EAEHVSPDSITFLGLLTACSHCGLLGKGKVYFDIMSQRFSIQPK--LEHYG 283

Query: 109 VLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148
            ++    + GR KEA  L   ++S+ +EP+  I  SLLS+
Sbjct: 284 AMVDLLGRAGRVKEAYEL---IESMPIEPDVVIWRSLLSS 320


>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 184/424 (43%), Positives = 270/424 (63%)

Query: 88  SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLS 147
           S+ DA ++F++MP+R+ V+W  LI+G+  N +  +A+  FR M +   +P+   +V +LS
Sbjct: 139 SISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLS 198

Query: 148 ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSA 207
           AC+ LGA + G W++ +I    ++L+  +  ALIDMYAKCG++    +VF    +K+V  
Sbjct: 199 ACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYT 258

Query: 208 YTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMF 267
           +   I G AMNG    A + F  M  +   PD ++++ VL AC H G V +G + F SM 
Sbjct: 259 WNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMK 318

Query: 268 DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMG 327
              G++P ++HY CMVDLLGRAGLLEEA   I SM ++PD +IW  LL ACRVH N ++G
Sbjct: 319 QQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLG 378

Query: 328 QRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGV 387
           + I   LIE + N+   Y+LLSNIY    +     ++R  M  R I++ PGCS IE++ V
Sbjct: 379 EYIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMSLRGIRKVPGCSSIEINNV 438

Query: 388 VHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKL 447
           V+EF+A +    + + IY+  + ++KK+K  GY   T   ++DIE+EEKE  + YHSEKL
Sbjct: 439 VYEFVASNDRKPEFEAIYKQLDNLIKKLKENGYVTGTDMALYDIEKEEKEHSVMYHSEKL 498

Query: 448 ALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSC 507
           ALAFGL+ +     +RIVKN+RIC DCH   K++S V+KR I +RDR  +HHF +G CSC
Sbjct: 499 ALAFGLLNSPLDCTLRIVKNLRICLDCHEFFKVLSLVYKRYIVVRDRNRFHHFYEGFCSC 558

Query: 508 LEYW 511
            +YW
Sbjct: 559 RDYW 562



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 118/278 (42%), Gaps = 10/278 (3%)

Query: 67  KMPQRNDVSWNSILGGL----VRFGSVDDACRVFNQMPKRSLVSWVV--LISGFAQNGRP 120
           K+P  NDV     L  L    V     +   R+F++  + S+ S     +I  +    + 
Sbjct: 12  KIPDYNDVRRGHFLMKLIDDSVSRNGFESIARIFSKY-RGSINSQQCNSMIRTYLDLNKH 70

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
             +L +F  M    + P+S+   ++L A AQL     G  ++  + +     D     AL
Sbjct: 71  LNSLYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQMGFICDVYTSTAL 130

Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           + +Y  C SI  A Q+F    +++   + + I G   N   ++A + F  M + G  P  
Sbjct: 131 VHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSE 190

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
            + + VLSACSHLG   +G  + H     + ++  +     ++D+  + G + E E    
Sbjct: 191 RTVVVVLSACSHLGAFNQG-KWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFE 249

Query: 301 SMPMKPDNVIWGTLLGACRVHRNAEMG-QRIGNMLIES 337
            +  K +   W  L+    ++   +   Q    ML+E+
Sbjct: 250 EIREK-NVYTWNVLISGYAMNGQGDAALQAFSRMLMEN 286



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 87/181 (48%), Gaps = 16/181 (8%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +  N    +VFV  +LI  Y+ CG V +   VF+E  + +V +WN +I+GY  NG+    
Sbjct: 216 IYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAA 275

Query: 62  LKLFDKMPQRN----DVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLIS 112
           L+ F +M   N    +V++  +L      G V +    F  M ++      +  +  ++ 
Sbjct: 276 LQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVD 335

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKL 172
              + G  +EAL L   +QS+ +EP+  I  +LL AC   G    G     YI K+ I+L
Sbjct: 336 LLGRAGLLEEALEL---IQSMSIEPDPIIWRALLCACRVHGNTKLG----EYIIKRLIEL 388

Query: 173 D 173
           +
Sbjct: 389 E 389


>gi|357154074|ref|XP_003576661.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Brachypodium distachyon]
          Length = 802

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 209/529 (39%), Positives = 303/529 (57%), Gaps = 40/529 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +  + FA D F+ NSLI  Y  CG V +A  VFD+  + D+VSW S+I GY +N    E 
Sbjct: 77  LASSRFAGDAFLDNSLIHLYCKCGSVVEAHKVFDKMRNKDMVSWTSLIAGYAQNDMPAEA 136

Query: 62  LKLFDKMPQ----RNDVSWNSIL-----------GGLV---------------------- 84
           + L   M +     N  ++ S+L           GG +                      
Sbjct: 137 IGLLPGMLKGRFKPNGFTFASLLKAVGAYADSGIGGQIHALAVKCDWHEDVYVGSALLDM 196

Query: 85  --RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             R G +D A  VF+++  ++ VSW  LISGFA+ G  + AL +F EMQ    E      
Sbjct: 197 YARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTY 256

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S+ SA A +GAL+ G WV++++ K   KL + +   ++DMYAK GS+  A +VF    +
Sbjct: 257 SSIFSALAGIGALEQGKWVHAHMIKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLN 316

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           KD+  + S +   A  G   EA   FE M+  GI  + IS++ +L+ACSH G V++G +Y
Sbjct: 317 KDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQISFLCILTACSHGGLVKEGKHY 376

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F  M   + ++PE++HY  +VDLLGRAGLL  A  FI  MPM+P   +WG LL ACR+H+
Sbjct: 377 F-DMIKEYNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHK 435

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           NA++GQ   + + + D +  G  +LL NIY  T   + A  VRK M+   +K+ P CS +
Sbjct: 436 NAKVGQFAADHVFQLDPDDSGPPVLLYNIYASTGHWDAAARVRKMMKATGVKKEPACSWV 495

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E++  VH F+A D +H + +EIY+ W+EI  KI+  GY  +   V+  ++E+E+E  + Y
Sbjct: 496 EIENSVHMFVANDDTHPRAEEIYKMWDEISMKIRKEGYVPDMDYVLLHVDEQEREANLQY 555

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISI 491
           HSEK+ALAF LI    G+ IRI+KNIRIC DCHSA K +SKVF+R+I I
Sbjct: 556 HSEKIALAFALIQMPAGATIRIMKNIRICGDCHSAFKYISKVFEREIVI 604



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 112/234 (47%), Gaps = 41/234 (17%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + VK  +  DV+V ++L+  Y+ CG++  A  VFD+ D  + VSWN++I+G+ R G+   
Sbjct: 177 LAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGET 236

Query: 61  GLKLFDKMPQRNDV-----------------------SW-----------------NSIL 80
            L +F +M QRN                          W                 N++L
Sbjct: 237 ALMVFAEM-QRNGFEATHFTYSSIFSALAGIGALEQGKWVHAHMIKSRQKLTAFVGNTML 295

Query: 81  GGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
               + GS+ DA +VF ++  + LV+W  +++ FAQ G  KEA++ F EM+   +  N  
Sbjct: 296 DMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQI 355

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
             + +L+AC+  G +  G   +  I++  ++ +      ++D+  + G ++ A+
Sbjct: 356 SFLCILTACSHGGLVKEGKHYFDMIKEYNLEPEIEHYVTVVDLLGRAGLLNYAL 409



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 61/120 (50%)

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
           + S +L P   +  + ++ACAQ   LD    +++++       D+ L  +LI +Y KCGS
Sbjct: 42  LDSGELAPTPRVYHAFITACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHLYCKCGS 101

Query: 190 IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
           +  A +VF    +KD+ ++TS I G A N    EA  L   M      P+  ++ ++L A
Sbjct: 102 VVEAHKVFDKMRNKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKA 161


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/548 (36%), Positives = 309/548 (56%), Gaps = 40/548 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           V   +  DVFV  +++  Y+ CG++ +A  VFD+    D+V W +MI G  +NG+  E +
Sbjct: 132 VDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAV 191

Query: 63  KLFDKMPQRNDVSWNSILGGLVRF------------------------------------ 86
            ++ +M ++       ++ GL++                                     
Sbjct: 192 DIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMY 251

Query: 87  ---GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
              G ++ A  VF +M  ++++SW  LISGFAQNG    AL L  +MQS   +P+S  LV
Sbjct: 252 AKNGHLELASCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLV 311

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           S+L AC+Q+G L  G  V+ YI ++ +  D +   A+IDMY+KCGS+  A  VF     +
Sbjct: 312 SVLLACSQVGFLKLGKSVHGYIVRR-LHFDCVSSTAVIDMYSKCGSLSFARTVFDQISFR 370

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           D  ++ + I    ++G   EA  LF  M+   + PD  ++ ++LSA SH G VEKG Y+F
Sbjct: 371 DSISWNAIIASYGIHGSGEEALSLFLQMRETNVKPDHATFASLLSAFSHSGLVEKGRYWF 430

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
             M + + I+P   HYACMVDLL RAG +EEA+  I SM  +P   IW  LL  C  H  
Sbjct: 431 SIMVNEYKIQPSEKHYACMVDLLSRAGRVEEAQELIESMITEPGIAIWVALLSGCLNHGK 490

Query: 324 AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE 383
             +G+     ++E + +  G Y L+SN +    + +   EVRK M+K  +K+ PG S++E
Sbjct: 491 FLIGEMAAKKVLELNPDDPGIYSLVSNFFATARRWDEVAEVRKIMKKTGMKKVPGYSVME 550

Query: 384 LDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYH 443
           ++G +H FL  D+SH + +EI Q   ++  ++K  GY  +T  V+ ++EEE KE ++  H
Sbjct: 551 VNGKLHAFLMEDKSHHQYEEIMQVLGKLDYEMKAMGYVPKTEFVLHNLEEEVKERMLCNH 610

Query: 444 SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
           SE+LA+AFGL+ T PG+ + I KN+R+C DCH A K +SK+  R+I +RD K +HHF+DG
Sbjct: 611 SERLAIAFGLLNTGPGTRLLITKNLRVCGDCHEATKFISKIVNREIVVRDVKRFHHFKDG 670

Query: 504 SCSCLEYW 511
            CSC +YW
Sbjct: 671 VCSCGDYW 678



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 108/353 (30%), Positives = 178/353 (50%), Gaps = 52/353 (14%)

Query: 17  LIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ---RND 73
           LIQ Y+  G +  AR VFD+S    V +WN+MI  Y R G + E L L+ +M     R D
Sbjct: 45  LIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRGAMFEALSLYHRMASEGVRPD 104

Query: 74  VS---------------------WN---------------SILGGLVRFGSVDDACRVFN 97
            S                     W                ++L    + G +D+A RVF+
Sbjct: 105 SSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFD 164

Query: 98  QMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDY 157
           +M +R LV W  +I+G AQNG+ +EA+ ++R+M    +E +  +++ L+ AC  LG    
Sbjct: 165 KMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKM 224

Query: 158 GNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAM 217
           G  ++ Y+ +K I +D I+  +L+DMYAK G ++LA  VF     K+V ++++ I G A 
Sbjct: 225 GLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQ 284

Query: 218 NGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELD 277
           NG +  A +L  +M+S G  PDS+S ++VL ACS +G+++ G         VHG      
Sbjct: 285 NGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLG-------KSVHGYIVRRL 337

Query: 278 HYAC-----MVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAE 325
           H+ C     ++D+  + G L  A      +  + D++ W  ++ +  +H + E
Sbjct: 338 HFDCVSSTAVIDMYSKCGSLSFARTVFDQISFR-DSISWNAIIASYGIHGSGE 389



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 113/237 (47%), Gaps = 39/237 (16%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++     DV V+ SL+  Y+  G +  A  VF      +V+SW+++I+G+ +NG     
Sbjct: 232 MIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQNGFAGNA 291

Query: 62  LKLFDKMP----QRNDVSWNSIL----------------GGLVR---------------- 85
           L+L   M     + + VS  S+L                G +VR                
Sbjct: 292 LQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGYIVRRLHFDCVSSTAVIDMY 351

Query: 86  --FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
              GS+  A  VF+Q+  R  +SW  +I+ +  +G  +EAL+LF +M+  +++P+ A   
Sbjct: 352 SKCGSLSFARTVFDQISFRDSISWNAIIASYGIHGSGEEALSLFLQMRETNVKPDHATFA 411

Query: 144 SLLSACAQLGALDYGNWVYS-YIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
           SLLSA +  G ++ G + +S  + +  I+      A ++D+ ++ G ++ A ++  S
Sbjct: 412 SLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSEKHYACMVDLLSRAGRVEEAQELIES 468



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 2/138 (1%)

Query: 178 AALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGIS 237
           A LI  YA+ G I+ A QVF       V A+ + I   +  G   EA  L+  M S+G+ 
Sbjct: 43  AKLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRGAMFEALSLYHRMASEGVR 102

Query: 238 PDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAEN 297
           PDS +Y  VL AC+    +  G   +    D  G   ++   A +++L  + G ++EA  
Sbjct: 103 PDSSTYTVVLKACTRSLDLRSGEETWRQAVD-QGYGDDVFVGAAVLNLYAKCGKMDEAMR 161

Query: 298 FIASMPMKPDNVIWGTLL 315
               M  + D V W T++
Sbjct: 162 VFDKMG-RRDLVCWTTMI 178


>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/549 (35%), Positives = 322/549 (58%), Gaps = 40/549 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           V+  F  +VFV+ +L+  YS  G +  AR +F+   + +VV+WN++++GY  +G   E +
Sbjct: 149 VRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVTWNAIVSGYSDHGFSEEAI 208

Query: 63  KLFDKMPQRND-VSWNSIL-------------------GGLVRFG--------------- 87
            LF+ M ++   V + +I+                   G ++R G               
Sbjct: 209 DLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIY 268

Query: 88  ----SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL-DLEPNSAIL 142
                VDDA RVF++M  + + +W ++++GF+       A+  F +M  + +L+ +S  L
Sbjct: 269 VSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIAL 328

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           + +LS+C+  GAL  G  V++   K C   +  + +A+IDMYA CG+++ A + F+  G+
Sbjct: 329 MGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGE 388

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           KDV  + + I G  MNG+  +A +LF  MK  G+ PD  ++++VL ACSH G V +G   
Sbjct: 389 KDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQI 448

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F+ M     + P L HYAC++D+LGRAG L+ A +FI +MP +PD  ++ TLLGACR+H 
Sbjct: 449 FYHMVKTSHVIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHG 508

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           N ++G  I   + E + N  G Y+LLSN+Y      E  +  R ++R +++K+ PG S I
Sbjct: 509 NIKLGHEISQKIFEMEPNDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRMKKDPGFSSI 568

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E++  ++ F+AG++ H +  +I    + ++ KIK  GY   T  ++ D+ ++ K+ ++ +
Sbjct: 569 EINQEIYTFMAGEKDHPQYFKIEGILKGLILKIKKAGYVPNTNVLLQDVSDDMKKDILYH 628

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSEK+A+AFGL+ TKP ++IRI KN+R C DCH+A K VSKVF R + I+D   +H F+D
Sbjct: 629 HSEKMAIAFGLMRTKPETIIRITKNLRTCDDCHTASKFVSKVFGRVLVIKDANRFHVFQD 688

Query: 503 GSCSCLEYW 511
           G CSC +YW
Sbjct: 689 GVCSCRDYW 697



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 171/356 (48%), Gaps = 42/356 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++ +   ++ F+ NSL+  Y  CG + DA+ +F  +   +VVSW  +I+G  +N   +E 
Sbjct: 47  IITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPYKNVVSWTILISGLAKNDCFVEA 106

Query: 62  LKLFDKMP----QRNDVSWNSILG-----GLVR--------------------------- 85
           + +F +M     + N V+ +S+L      GL+R                           
Sbjct: 107 IDVFREMIMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDM 166

Query: 86  ---FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
              FG +  A ++F  M +R++V+W  ++SG++ +G  +EA+ LF  M+   L  +   +
Sbjct: 167 YSKFGCMGVARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTI 226

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           +SL+ A   +G L  G  ++ +I +   + D  +  AL+D+Y     +D A +VF     
Sbjct: 227 MSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMSV 286

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKS-KGISPDSISYIAVLSACSHLGWVEKGFY 261
           KDV+A+T  + G +   H   A + F  M   + +  DSI+ + +LS+CSH G +++G  
Sbjct: 287 KDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQG-R 345

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
             H++         +   + ++D+    G LE+A+ F   M  K D V W  ++  
Sbjct: 346 RVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEK-DVVCWNAMIAG 400



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 93/201 (46%), Gaps = 19/201 (9%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + +K  FA ++FV +++I  Y+ CG + DA+  F    + DVV WN+MI G   NG   +
Sbjct: 350 LAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTD 409

Query: 61  GLKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRS-----LVSWVVLI 111
            + LF +M       ++ ++ S+L      G V +  ++F  M K S     L  +  +I
Sbjct: 410 AIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHVIPNLQHYACVI 469

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK 171
               + G+   A +    M     +P+  +  +LL AC   G +  G+     I +K  +
Sbjct: 470 DILGRAGQLDAAYSFINNMP---FQPDFDVYSTLLGACRIHGNIKLGH----EISQKIFE 522

Query: 172 L---DSILCAALIDMYAKCGS 189
           +   D+     L +MYA  G+
Sbjct: 523 MEPNDAGYYVLLSNMYALAGN 543



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 93/215 (43%), Gaps = 2/215 (0%)

Query: 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
           P      +R + S   +  S +     S   +L  L     +++ I    +  ++ L  +
Sbjct: 2   PPVNFNFYRHLSSNPTQRLSPLAQPHASILRKLKDLKPLQQIHAQIITSGLTHNTFLSNS 61

Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
           L++ Y  CG +  A Q+FH    K+V ++T  I GLA N   +EA ++F  M      P+
Sbjct: 62  LMNAYVYCGLLADAKQIFHHTPYKNVVSWTILISGLAKNDCFVEAIDVFREMIMGNFKPN 121

Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI 299
           +++  +VL A ++LG +       H  +   G +  +     +VD+  + G +  A    
Sbjct: 122 AVTISSVLPAFANLGLIRIA-KSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLF 180

Query: 300 ASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNML 334
            SM  + + V W  ++     H  +E    + N++
Sbjct: 181 ESMSER-NVVTWNAIVSGYSDHGFSEEAIDLFNLM 214


>gi|302820798|ref|XP_002992065.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
 gi|300140187|gb|EFJ06914.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
          Length = 771

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/511 (38%), Positives = 302/511 (59%), Gaps = 10/511 (1%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D     ++    S  G +R AR +      +DV++WN+++ GY R G++ E  +LF  M 
Sbjct: 262 DSIAFTAMTAVLSDQGELRGAREMLRYLSAVDVIAWNALLEGYSRTGDLDEVRRLFSAME 321

Query: 70  QRNDVSWNSILGGLVRF----GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALA 125
            R  V+   + G LV      G VDDA RV + MP R+ VSW  +I+ +AQNG   EA+ 
Sbjct: 322 HRT-VATTVVAGTLVNLYGKCGRVDDARRVLDAMPVRTSVSWTAMIAAYAQNGNAAEAIN 380

Query: 126 LFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI-LCAALIDMY 184
           LF+ M     EP+   L+S++ +CA LG L  G  +++ I+   +   S+ L  A+I MY
Sbjct: 381 LFQCMDLEGAEPSDITLISVVDSCAVLGTLSLGKRIHARIRSSPLFSQSLMLLNAVITMY 440

Query: 185 AKCGSIDLAMQVFHSYG--DKDVSAYTSAIFGLAMNGHSIEAFELFENMK-SKGISPDSI 241
            KCG+++LA +VF S     + V  +T+ I   A NG   EA ELF+ M    G  P+ +
Sbjct: 441 GKCGNLELAREVFESVPLRTRSVVTWTAMIRAYAQNGVGEEAIELFQEMVIDGGTEPNRV 500

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
           ++++VLSACSHLG +E+ + +F SM    G+ P  DHY C+VDLLGRAG L EAE  +  
Sbjct: 501 TFLSVLSACSHLGQLEQAWEHFCSMGPDFGVPPAGDHYCCLVDLLGRAGRLGEAEKLLLR 560

Query: 302 MP-MKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGEN 360
               + D V W   L AC+++ + E  QR    + E +  +    +LLSN+Y    +  +
Sbjct: 561 HKDFEADVVCWIAFLSACQMNGDLERSQRAAKRVSELEPENVAGRVLLSNVYAAKGRRAD 620

Query: 361 AEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGY 420
              +R  M+   +K+  G S IE++  VHEF+  D SH +  EIY   E + ++IK  GY
Sbjct: 621 VARIRNEMKSSGVKKFAGRSWIEINNRVHEFMVSDVSHPRKLEIYSELERLHREIKEAGY 680

Query: 421 NVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKL 480
             +T+ V+ D++EE+K  ++GYHSE+LA+A G+I T PG+ +R+VKN+R+CSDCH+A K 
Sbjct: 681 VPDTKMVLRDVDEEKKAQLLGYHSERLAMALGIISTPPGTTLRVVKNLRVCSDCHAATKF 740

Query: 481 VSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           +S++  R+I +RD   +HHF+DG CSC +YW
Sbjct: 741 ISQIVGRQIIVRDTSRFHHFKDGVCSCGDYW 771



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 158/342 (46%), Gaps = 40/342 (11%)

Query: 13  VKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRN 72
           + N LI  +  CG    AR VF+     +  SW+ +I  YV +  I +   LFD MP  +
Sbjct: 44  LTNLLIDLFGKCGDPDAARAVFNRVRLPNEYSWSCIIQAYVSSSRIHDARALFDSMPGFD 103

Query: 73  DVSWNSILGGLVRFGSVDDACRVFNQM-PKRSLVSWVVLISGFAQNGRPKEALALFREMQ 131
             +WN ++    R   +DDA  +F+ M   R +VSW +L++G+A++ R +EA ALFR M 
Sbjct: 104 AFTWNIMIAAYARINRLDDARELFHGMISGRDVVSWAILVAGYARHDRLEEASALFRRMP 163

Query: 132 SLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSID 191
             D    +    S+L   A  G L     ++  I     + D+  C A+I  Y K   +D
Sbjct: 164 LWD----TVTCTSVLQGYAHNGHLAEAQELFDRIGGAGDR-DATACNAMIAAYGKNARVD 218

Query: 192 LAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAV----- 246
           LA  +F     ++ ++++  +   A NGH   A + F+ M  +    DSI++ A+     
Sbjct: 219 LAEGLFAQIKLRNAASWSLLLLTYAQNGHLDLAKKSFDRMPQR----DSIAFTAMTAVLS 274

Query: 247 --------------LSACSHLGW--VEKGFYYFHSMFDVHGIKPELDHY--------ACM 282
                         LSA   + W  + +G+     + +V  +   ++H           +
Sbjct: 275 DQGELRGAREMLRYLSAVDVIAWNALLEGYSRTGDLDEVRRLFSAMEHRTVATTVVAGTL 334

Query: 283 VDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
           V+L G+ G +++A   + +MP++  +V W  ++ A   + NA
Sbjct: 335 VNLYGKCGRVDDARRVLDAMPVRT-SVSWTAMIAAYAQNGNA 375



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 158/372 (42%), Gaps = 64/372 (17%)

Query: 9   YDVFVKNSLIQFYSVCGRVRDARWVFDES-DDLDVVSWNSMINGYVRNGEILEGLKLFDK 67
           +D F  N +I  Y+   R+ DAR +F       DVVSW  ++ GY R+  + E   LF +
Sbjct: 102 FDAFTWNIMIAAYARINRLDDARELFHGMISGRDVVSWAILVAGYARHDRLEEASALFRR 161

Query: 68  MPQRNDVSWNSILGGLV-------------RFGSVDD----ACR---------------- 94
           MP  + V+  S+L G               R G   D    AC                 
Sbjct: 162 MPLWDTVTCTSVLQGYAHNGHLAEAQELFDRIGGAGDRDATACNAMIAAYGKNARVDLAE 221

Query: 95  -VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD------------------- 134
            +F Q+  R+  SW +L+  +AQNG    A   F  M   D                   
Sbjct: 222 GLFAQIKLRNAASWSLLLLTYAQNGHLDLAKKSFDRMPQRDSIAFTAMTAVLSDQGELRG 281

Query: 135 ----LEPNSAILV----SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAK 186
               L   SA+ V    +LL   ++ G LD    ++S ++ + +   +++   L+++Y K
Sbjct: 282 AREMLRYLSAVDVIAWNALLEGYSRTGDLDEVRRLFSAMEHRTVA-TTVVAGTLVNLYGK 340

Query: 187 CGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAV 246
           CG +D A +V  +   +   ++T+ I   A NG++ EA  LF+ M  +G  P  I+ I+V
Sbjct: 341 CGRVDDARRVLDAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCMDLEGAEPSDITLISV 400

Query: 247 LSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKP 306
           + +C+ LG +  G      +         L     ++ + G+ G LE A     S+P++ 
Sbjct: 401 VDSCAVLGTLSLGKRIHARIRSSPLFSQSLMLLNAVITMYGKCGNLELAREVFESVPLRT 460

Query: 307 DNVI-WGTLLGA 317
            +V+ W  ++ A
Sbjct: 461 RSVVTWTAMIRA 472



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 16/163 (9%)

Query: 7   FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDL---DVVSWNSMINGYVRNGEILEGLK 63
           F+  + + N++I  Y  CG +  AR VF ES  L    VV+W +MI  Y +NG   E ++
Sbjct: 426 FSQSLMLLNAVITMYGKCGNLELAREVF-ESVPLRTRSVVTWTAMIRAYAQNGVGEEAIE 484

Query: 64  LFDKM-----PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLISG 113
           LF +M      + N V++ S+L      G ++ A   F  M     V      +  L+  
Sbjct: 485 LFQEMVIDGGTEPNRVTFLSVLSACSHLGQLEQAWEHFCSMGPDFGVPPAGDHYCCLVDL 544

Query: 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALD 156
             + GR  EA  L   ++  D E +    ++ LSAC   G L+
Sbjct: 545 LGRAGRLGEAEKLL--LRHKDFEADVVCWIAFLSACQMNGDLE 585


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/549 (35%), Positives = 311/549 (56%), Gaps = 40/549 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           VK  F+ +    N+L+  YS CG +  A+ VF E  D  VVS+ SMI GY R G   E +
Sbjct: 172 VKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAV 231

Query: 63  KLFDKMPQR----------------------------------NDVSW-----NSILGGL 83
           KLF++M +                                   ND+ +     N+++   
Sbjct: 232 KLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMY 291

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM-QSLDLEPNSAIL 142
            + GS+ +A  VF++M  + ++SW  +I G+++N    EAL+LF  + +     P+   +
Sbjct: 292 AKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTV 351

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
             +L ACA L A D G  ++ YI +     D  +  +L+DMYAKCG++ LA  +F     
Sbjct: 352 ACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIAS 411

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           KD+ ++T  I G  M+G   EA  LF  M+  GI  D IS++++L ACSH G V++G+ +
Sbjct: 412 KDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRF 471

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F+ M     I+P ++HYAC+VD+L R G L +A  FI +MP+ PD  IWG LL  CR+H 
Sbjct: 472 FNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHH 531

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           + ++ +++   + E +  + G Y+L++NIY E  K E  + +RK + +R +++ PGCS I
Sbjct: 532 DVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWI 591

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E+ G V+ F+AGD S+ +T+ I  F  ++  ++   GY+  T+  + D EE EKE  +  
Sbjct: 592 EIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCG 651

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSEKLA+A G+I +  G +IR+ KN+R+C DCH   K +SK+ +R+I +RD   +H F+D
Sbjct: 652 HSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKD 711

Query: 503 GSCSCLEYW 511
           G CSC  +W
Sbjct: 712 GHCSCRGFW 720



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 112/360 (31%), Positives = 171/360 (47%), Gaps = 42/360 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K+ F     V NSL+ FY    RV  AR VFDE  + DV+SWNS+INGYV NG   +G
Sbjct: 70  ILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKG 129

Query: 62  LKLFDKMP---------------------------------------QRNDVSWNSILGG 82
           L +F +M                                         R D   N++L  
Sbjct: 130 LSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDM 189

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G +D A  VF +M  RS+VS+  +I+G+A+ G   EA+ LF EM+   + P+   +
Sbjct: 190 YSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTV 249

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            ++L+ CA+   LD G  V+ +I++  +  D  +  AL+DMYAKCGS+  A  VF     
Sbjct: 250 TAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRV 309

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFE-NMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
           KD+ ++ + I G + N ++ EA  LF   ++ K  SPD  +   VL AC+ L   +KG  
Sbjct: 310 KDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKG-R 368

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
             H     +G   +      +VD+  + G L  A      +  K D V W  ++    +H
Sbjct: 369 EIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASK-DLVSWTVMIAGYGMH 427



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 91/287 (31%), Positives = 153/287 (53%), Gaps = 3/287 (1%)

Query: 53  VRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLIS 112
           V  GE L G  L     +RN V  NS++   ++   VD A +VF++M +R ++SW  +I+
Sbjct: 60  VHGGEQLHGFILKSGFGERNSVG-NSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIIN 118

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKL 172
           G+  NG  ++ L++F +M    +E + A +VS+ + CA    +  G  V+S   K C   
Sbjct: 119 GYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSR 178

Query: 173 DSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMK 232
           +   C  L+DMY+KCG +D A  VF    D+ V +YTS I G A  G + EA +LFE M+
Sbjct: 179 EDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEME 238

Query: 233 SKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLL 292
            +GISPD  +  AVL+ C+    +++G    H     + +  ++     ++D+  + G +
Sbjct: 239 EEGISPDVYTVTAVLNCCARYRLLDEG-KRVHEWIKENDLGFDIFVSNALMDMYAKCGSM 297

Query: 293 EEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQ 339
           +EAE   + M +K D + W T++G    +  A     + N+L+E  +
Sbjct: 298 QEAELVFSEMRVK-DIISWNTIIGGYSKNCYANEALSLFNLLLEEKR 343



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 128/291 (43%), Gaps = 77/291 (26%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           + +N   +D+FV N+L+  Y+ CG +++A  VF E    D++SWN++I GY +N    E 
Sbjct: 272 IKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEA 331

Query: 62  LKLFDKM-------PQRNDVSW---------------------------------NSILG 81
           L LF+ +       P    V+                                  NS++ 
Sbjct: 332 LSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVD 391

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G++  A  +F+ +  + LVSW V+I+G+  +G  KEA+ALF +M+   +E +   
Sbjct: 392 MYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEIS 451

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSIL--CAALIDMYAKCGSIDLAMQVFHS 199
            VSLL AC+  G +D G W +  I +   K++  +   A ++DM A+ G +         
Sbjct: 452 FVSLLYACSHSGLVDEG-WRFFNIMRHECKIEPTVEHYACIVDMLARTGDL--------- 501

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250
                                 I+A+   ENM    I PD+  + A+L  C
Sbjct: 502 ----------------------IKAYRFIENMP---IPPDATIWGALLCGC 527



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 133/315 (42%), Gaps = 40/315 (12%)

Query: 96  FNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGAL 155
           F+++     + W +L++  A++G    ++ LF++M S  +E +S     +  + + L ++
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 156 DYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGL 215
             G  ++ +I K      + +  +L+  Y K   +D A +VF    ++DV ++ S I G 
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 120

Query: 216 AMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS-----------HLGWVEKGF---- 260
             NG + +   +F  M   GI  D  + ++V + C+           H   V+  F    
Sbjct: 121 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRED 180

Query: 261 YYFHSMFDVHGIKPELD---------------HYACMVDLLGRAGLLEEAENFIASMP-- 303
            + +++ D++    +LD                Y  M+    R GL  EA      M   
Sbjct: 181 RFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEE 240

Query: 304 -MKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSN----IYVETLKG 358
            + PD      +L  C  +R  + G+R+   + E+D   D   I +SN    +Y +    
Sbjct: 241 GISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFD---IFVSNALMDMYAKCGSM 297

Query: 359 ENAEEVRKTMRKRKI 373
           + AE V   MR + I
Sbjct: 298 QEAELVFSEMRVKDI 312


>gi|302786698|ref|XP_002975120.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
 gi|300157279|gb|EFJ23905.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
          Length = 485

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/475 (39%), Positives = 299/475 (62%), Gaps = 6/475 (1%)

Query: 43  VSWNSMINGYVRNGEILEGLKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQ 98
           V++ ++++G+   G + EG ++  ++     + + +   +++    +  SV++A   F +
Sbjct: 11  VTYVTVLSGFTTPGSLEEGRRVHSRVAGAGLEVDVIVGTALVNMYGKCQSVEEARAAFEK 70

Query: 99  MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL--DLEPNSAILVSLLSACAQLGALD 156
           + + ++VSW  +++ +AQNG  + AL L+REM S    + PN    ++LL AC+ LGAL 
Sbjct: 71  ISRPNVVSWSAMLAAYAQNGHARMALELYREMGSARKGMAPNRVTFITLLDACSFLGALA 130

Query: 157 YGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLA 216
            G  +++ + ++    D ++C AL++ Y +CGS+  A  VF     +DV +++S I   A
Sbjct: 131 EGRKIHAAVAERGFDTDLVVCNALVNFYGRCGSLGDAKIVFDGMRRRDVISWSSMISAFA 190

Query: 217 MNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPEL 276
             G   EA EL+  M S+G  PD I +I+VL ACS+ G VE    +F S+     ++P L
Sbjct: 191 QRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQVEPTL 250

Query: 277 DHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIE 336
           +HYACMVD+LGRAG L +AE+ +  MP  P  +++ T+L AC+++ + E G+    ++ E
Sbjct: 251 EHYACMVDVLGRAGKLRDAEDLLRLMPFHPGPLLYMTMLSACKLYTDVERGEAAAEVVFE 310

Query: 337 SDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDR 396
            D  +   YI L+NIY    + ++A  +RK M +R IK+ PGCS IE+   VHEF+AGD+
Sbjct: 311 LDPENSSPYITLANIYSAAKRPKDAARIRKLMEERGIKKKPGCSWIEVLDRVHEFIAGDK 370

Query: 397 SHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICT 456
            H +  EIY   + + +++K  GY  +T+ V+ D+EE+EKE ++ YHSEKLA+AFGLI T
Sbjct: 371 MHPQRDEIYAEIQRLGRQMKEAGYFQDTKVVLQDVEEDEKENLLWYHSEKLAIAFGLIST 430

Query: 457 KPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            PG+ +RIVKN+R+CSDCH+A K++SKV  R+I +RD   +HHF DG CSC +YW
Sbjct: 431 PPGAPLRIVKNLRVCSDCHAATKVISKVTGREILVRDTNRFHHFLDGMCSCNDYW 485



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 100/190 (52%), Gaps = 4/190 (2%)

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
           M+   +E N    V++LS     G+L+ G  V+S +    +++D I+  AL++MY KC S
Sbjct: 1   MEIRGVERNKVTYVTVLSGFTTPGSLEEGRRVHSRVAGAGLEVDVIVGTALVNMYGKCQS 60

Query: 190 IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKS--KGISPDSISYIAVL 247
           ++ A   F      +V ++++ +   A NGH+  A EL+  M S  KG++P+ +++I +L
Sbjct: 61  VEEARAAFEKISRPNVVSWSAMLAAYAQNGHARMALELYREMGSARKGMAPNRVTFITLL 120

Query: 248 SACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPD 307
            ACS LG + +G    H+     G   +L     +V+  GR G L +A+     M  + D
Sbjct: 121 DACSFLGALAEG-RKIHAAVAERGFDTDLVVCNALVNFYGRCGSLGDAKIVFDGM-RRRD 178

Query: 308 NVIWGTLLGA 317
            + W +++ A
Sbjct: 179 VISWSSMISA 188



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 101/223 (45%), Gaps = 42/223 (18%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM- 68
           DV V  +L+  Y  C  V +AR  F++    +VVSW++M+  Y +NG     L+L+ +M 
Sbjct: 44  DVIVGTALVNMYGKCQSVEEARAAFEKISRPNVVSWSAMLAAYAQNGHARMALELYREMG 103

Query: 69  PQRNDVSWN-----------SILGGLV-----------------------------RFGS 88
             R  ++ N           S LG L                              R GS
Sbjct: 104 SARKGMAPNRVTFITLLDACSFLGALAEGRKIHAAVAERGFDTDLVVCNALVNFYGRCGS 163

Query: 89  VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148
           + DA  VF+ M +R ++SW  +IS FAQ GR  EA+ L+  M S    P+  I +S+L A
Sbjct: 164 LGDAKIVFDGMRRRDVISWSSMISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFA 223

Query: 149 CAQLGALDY-GNWVYSYIQKKCIKLDSILCAALIDMYAKCGSI 190
           C+  G ++  G++  S +    ++      A ++D+  + G +
Sbjct: 224 CSNSGVVEASGDFFRSIVGDTQVEPTLEHYACMVDVLGRAGKL 266



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 79/157 (50%), Gaps = 12/157 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V +  F  D+ V N+L+ FY  CG + DA+ VFD     DV+SW+SMI+ + + G + E 
Sbjct: 139 VAERGFDTDLVVCNALVNFYGRCGSLGDAKIVFDGMRRRDVISWSSMISAFAQRGRVDEA 198

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVF-----NQMPKRSLVSWVVLIS 112
           ++L+ +M       +D+ + S+L      G V+ +   F     +   + +L  +  ++ 
Sbjct: 199 MELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQVEPTLEHYACMVD 258

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
              + G+ ++A  L R M      P   + +++LSAC
Sbjct: 259 VLGRAGKLRDAEDLLRLMP---FHPGPLLYMTMLSAC 292


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/549 (35%), Positives = 311/549 (56%), Gaps = 40/549 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           VK  F+ +    N+L+  YS CG +  A+ VF E  D  VVS+ SMI GY R G   E +
Sbjct: 323 VKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAV 382

Query: 63  KLFDKMPQR----------------------------------NDVSW-----NSILGGL 83
           KLF++M +                                   ND+ +     N+++   
Sbjct: 383 KLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMY 442

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM-QSLDLEPNSAIL 142
            + GS+ +A  VF++M  + ++SW  +I G+++N    EAL+LF  + +     P+   +
Sbjct: 443 AKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTV 502

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
             +L ACA L A D G  ++ YI +     D  +  +L+DMYAKCG++ LA  +F     
Sbjct: 503 ACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIAS 562

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           KD+ ++T  I G  M+G   EA  LF  M+  GI  D IS++++L ACSH G V++G+ +
Sbjct: 563 KDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRF 622

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F+ M     I+P ++HYAC+VD+L R G L +A  FI +MP+ PD  IWG LL  CR+H 
Sbjct: 623 FNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHH 682

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           + ++ +++   + E +  + G Y+L++NIY E  K E  + +RK + +R +++ PGCS I
Sbjct: 683 DVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWI 742

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E+ G V+ F+AGD S+ +T+ I  F  ++  ++   GY+  T+  + D EE EKE  +  
Sbjct: 743 EIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCG 802

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSEKLA+A G+I +  G +IR+ KN+R+C DCH   K +SK+ +R+I +RD   +H F+D
Sbjct: 803 HSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKD 862

Query: 503 GSCSCLEYW 511
           G CSC  +W
Sbjct: 863 GHCSCRGFW 871



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 112/360 (31%), Positives = 171/360 (47%), Gaps = 42/360 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K+ F     V NSL+ FY    RV  AR VFDE  + DV+SWNS+INGYV NG   +G
Sbjct: 221 ILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKG 280

Query: 62  LKLFDKMP---------------------------------------QRNDVSWNSILGG 82
           L +F +M                                         R D   N++L  
Sbjct: 281 LSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDM 340

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G +D A  VF +M  RS+VS+  +I+G+A+ G   EA+ LF EM+   + P+   +
Sbjct: 341 YSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTV 400

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            ++L+ CA+   LD G  V+ +I++  +  D  +  AL+DMYAKCGS+  A  VF     
Sbjct: 401 TAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRV 460

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFE-NMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
           KD+ ++ + I G + N ++ EA  LF   ++ K  SPD  +   VL AC+ L   +KG  
Sbjct: 461 KDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKG-R 519

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
             H     +G   +      +VD+  + G L  A      +  K D V W  ++    +H
Sbjct: 520 EIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASK-DLVSWTVMIAGYGMH 578



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 105/375 (28%), Positives = 180/375 (48%), Gaps = 43/375 (11%)

Query: 5   NSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKL 64
           N F  D  + + L   Y+ CG +++A  VFDE      + WN ++N   ++G+    + L
Sbjct: 123 NGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGL 182

Query: 65  FDKM----------------------------------------PQRNDVSWNSILGGLV 84
           F KM                                         +RN V  NS++   +
Sbjct: 183 FKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVG-NSLVAFYL 241

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
           +   VD A +VF++M +R ++SW  +I+G+  NG  ++ L++F +M    +E + A +VS
Sbjct: 242 KNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVS 301

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           + + CA    +  G  V+S   K C   +   C  L+DMY+KCG +D A  VF    D+ 
Sbjct: 302 VFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRS 361

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           V +YTS I G A  G + EA +LFE M+ +GISPD  +  AVL+ C+    +++G    H
Sbjct: 362 VVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEG-KRVH 420

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
                + +  ++     ++D+  + G ++EAE   + M +K D + W T++G    +  A
Sbjct: 421 EWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVK-DIISWNTIIGGYSKNCYA 479

Query: 325 EMGQRIGNMLIESDQ 339
                + N+L+E  +
Sbjct: 480 NEALSLFNLLLEEKR 494



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 128/291 (43%), Gaps = 77/291 (26%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           + +N   +D+FV N+L+  Y+ CG +++A  VF E    D++SWN++I GY +N    E 
Sbjct: 423 IKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEA 482

Query: 62  LKLFDKM-------PQRNDVSW---------------------------------NSILG 81
           L LF+ +       P    V+                                  NS++ 
Sbjct: 483 LSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVD 542

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G++  A  +F+ +  + LVSW V+I+G+  +G  KEA+ALF +M+   +E +   
Sbjct: 543 MYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEIS 602

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSIL--CAALIDMYAKCGSIDLAMQVFHS 199
            VSLL AC+  G +D G W +  I +   K++  +   A ++DM A+ G +         
Sbjct: 603 FVSLLYACSHSGLVDEG-WRFFNIMRHECKIEPTVEHYACIVDMLARTGDL--------- 652

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250
                                 I+A+   ENM    I PD+  + A+L  C
Sbjct: 653 ----------------------IKAYRFIENMP---IPPDATIWGALLCGC 678



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 2/158 (1%)

Query: 102 RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161
           RS+      +  F ++G  + A+ L       D++P +  L S+L  CA   +L  G  V
Sbjct: 59  RSVTDANTQLRRFCESGNLENAVKLLCVSGKWDIDPRT--LCSVLQLCADSKSLKDGKEV 116

Query: 162 YSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHS 221
            ++I+     +DS L + L  MY  CG +  A +VF     +    +   +  LA +G  
Sbjct: 117 DNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDF 176

Query: 222 IEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
             +  LF+ M S G+  DS ++  V  + S L  V  G
Sbjct: 177 SGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGG 214


>gi|125584568|gb|EAZ25232.1| hypothetical protein OsJ_09035 [Oryza sativa Japonica Group]
          Length = 674

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 182/446 (40%), Positives = 297/446 (66%), Gaps = 5/446 (1%)

Query: 70  QRNDVSWNSILGGLVRFGSVD--DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALF 127
           +RN    N++L    + GS D   A +VF+ M +R +VSW  +I+ +AQNG   EA+ L+
Sbjct: 230 ERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDVVSWNSMIALYAQNGMSAEAIGLY 288

Query: 128 REMQSLD--LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYA 185
            +M ++   ++ N+  L ++L ACA  GA+  G  +++ + +  ++ +  +  +++DMY+
Sbjct: 289 SKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYS 348

Query: 186 KCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIA 245
           KCG +++A + F    +K++ ++++ I G  M+G   EA E+F  MK  G+ P+ I++I+
Sbjct: 349 KCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFIS 408

Query: 246 VLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMK 305
           VL+ACSH G +++G Y++++M    GI+  ++HY CMVDLLGRAG L+EA + I  M +K
Sbjct: 409 VLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVK 468

Query: 306 PDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVR 365
           PD  IWG LL ACR+H+N E+ +     L E D ++ G Y+LLSNIY E    ++ E +R
Sbjct: 469 PDAAIWGALLSACRIHKNVELAEMSVKRLFELDASNSGYYVLLSNIYAEARMWKDVERIR 528

Query: 366 KTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETR 425
             ++ R+I++ PG S  EL G ++ F  GD+SH +  EIY + E+++++++  GY   T 
Sbjct: 529 LLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPNTG 588

Query: 426 SVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVF 485
           SV+ D++EEEKE+ +  HSEKLA+AF L+ + P SVI I+KN+R+CSDCH+AMK ++K+ 
Sbjct: 589 SVLHDLDEEEKESALRIHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFITKIT 648

Query: 486 KRKISIRDRKHYHHFEDGSCSCLEYW 511
           +R+I IRD + +HHF+DG CSC +YW
Sbjct: 649 EREIIIRDLQRFHHFKDGLCSCRDYW 674



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 134/295 (45%), Gaps = 81/295 (27%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRD---ARWVFDESDDLDVVSWNSMINGYVRNGE 57
           ++ K  F  +  V N+++  Y+  G  RD   AR VFD + + DVVSWNSMI  Y +NG 
Sbjct: 223 LIAKIGFERNAGVVNTMLDSYAKGGS-RDLEVARKVFD-TMERDVVSWNSMIALYAQNGM 280

Query: 58  ILEGLKLFDKM------PQRNDVSWNSIL----------------GGLVRF--------- 86
             E + L+ KM       + N V+ +++L                  +VR          
Sbjct: 281 SAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVG 340

Query: 87  ----------GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136
                     G V+ A R F ++ +++++SW  +I+G+  +GR +EAL +F EM+   L 
Sbjct: 341 TSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLR 400

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKK-CIKLDSILCAALIDMYAKCGSIDLAMQ 195
           PN    +S+L+AC+  G LD G + Y+ ++++  I+        ++D+  + G +D    
Sbjct: 401 PNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLD---- 456

Query: 196 VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250
                                      EA+ L + MK K   PD+  + A+LSAC
Sbjct: 457 ---------------------------EAYSLIKEMKVK---PDAAIWGALLSAC 481


>gi|225424252|ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
           mitochondrial [Vitis vinifera]
 gi|297737690|emb|CBI26891.3| unnamed protein product [Vitis vinifera]
          Length = 610

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/528 (38%), Positives = 308/528 (58%), Gaps = 41/528 (7%)

Query: 25  GRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ---RND-------- 73
           G +  AR +FDE        WN+++ GYV+NG   + + ++ KM     R D        
Sbjct: 83  GDMSYARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVI 142

Query: 74  ---VSWNSILGGL-------------------------VRFGSVDDACRVFNQMPKRSLV 105
                   +  GL                         V+FG +  A  +F  M +R LV
Sbjct: 143 KACAELAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERDLV 202

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           +W  LI+   Q G   +AL  FREM    ++P+S  +VS LSAC  LG L+ G  +Y + 
Sbjct: 203 AWNALIAVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSALSACGHLGCLETGEEIYEFA 262

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
           +++ I  + I+  A +DM AKCG +D AM +F     ++V ++++ I G A+NG S +A 
Sbjct: 263 REEGIDSNIIVHNARLDMCAKCGDMDKAMNLFDEMPQRNVISWSTVIGGYAVNGESEKAL 322

Query: 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMF--DVHGIKPELDHYACMV 283
            LF  MK++G+ P+ ++++AVLSACSH G V +G+ YF+ M   D   I+P  +HYACMV
Sbjct: 323 ALFSRMKNQGVQPNYVTFLAVLSACSHTGRVNEGWQYFNFMAQSDDKNIQPRKEHYACMV 382

Query: 284 DLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDG 343
           DLLGR+G LEEA NFI  MP++ D  IWG LLGAC +H+N ++GQ + ++L E       
Sbjct: 383 DLLGRSGHLEEAYNFIKIMPIEADPGIWGALLGACAIHQNIKLGQHVADLLFELAPEIAS 442

Query: 344 RYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQE 403
            ++LLSN+Y    +    E+VR+ M+K+  ++    S +E +G +H    GD+SH ++  
Sbjct: 443 YHVLLSNMYAAAGRWHCVEKVRQRMKKKGARKVAAYSSVEFNGEIHILYGGDKSHPQSAS 502

Query: 404 IYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIR 463
           I    E+++K++K+ GY  ET SV  D+E+EEKE+ +  HSEKLA+AF LI   P   IR
Sbjct: 503 ILAKLEDLLKQMKSMGYIPETDSVFHDVEDEEKESTLSTHSEKLAIAFSLINGSPKFPIR 562

Query: 464 IVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           ++KN+RIC DCH+  KLVS++  R+I +RD+  +HHF++G CSC ++W
Sbjct: 563 VMKNLRICGDCHTFCKLVSRITMREIIMRDKNRFHHFKNGICSCKDFW 610



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 109/234 (46%), Gaps = 42/234 (17%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VVK+   +   V+  L+  Y   G +  A ++F    + D+V+WN++I   V+ G   + 
Sbjct: 161 VVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERDLVAWNALIAVCVQTGFSSKA 220

Query: 62  LKLFDKMP---------------------------------------QRNDVSWNSILGG 82
           L+ F +M                                          N +  N+ L  
Sbjct: 221 LQSFREMGMAGIKPDSVTIVSALSACGHLGCLETGEEIYEFAREEGIDSNIIVHNARLDM 280

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G +D A  +F++MP+R+++SW  +I G+A NG  ++ALALF  M++  ++PN    
Sbjct: 281 CAKCGDMDKAMNLFDEMPQRNVISWSTVIGGYAVNGESEKALALFSRMKNQGVQPNYVTF 340

Query: 143 VSLLSACAQLGALDYGNWVYSYIQK---KCIKLDSILCAALIDMYAKCGSIDLA 193
           +++LSAC+  G ++ G   ++++ +   K I+      A ++D+  + G ++ A
Sbjct: 341 LAVLSACSHTGRVNEGWQYFNFMAQSDDKNIQPRKEHYACMVDLLGRSGHLEEA 394



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 124/279 (44%), Gaps = 36/279 (12%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           ++ V N+ +   + CG +  A  +FDE    +V+SW+++I GY  NGE  + L LF +M 
Sbjct: 270 NIIVHNARLDMCAKCGDMDKAMNLFDEMPQRNVISWSTVIGGYAVNGESEKALALFSRMK 329

Query: 70  ----QRNDVSWNSILGGLVRFGSVDDACRVFNQM---------PKRSLVSWVVLISGFAQ 116
               Q N V++ ++L      G V++  + FN M         P++    +  ++    +
Sbjct: 330 NQGVQPNYVTFLAVLSACSHTGRVNEGWQYFNFMAQSDDKNIQPRKE--HYACMVDLLGR 387

Query: 117 NGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSIL 176
           +G  +EA    + M    +E +  I  +LL ACA    +  G  V   + +   ++ S  
Sbjct: 388 SGHLEEAYNFIKIM---PIEADPGIWGALLGACAIHQNIKLGQHVADLLFELAPEIASYH 444

Query: 177 CAALIDMYAKCGS---IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKS 233
              L +MYA  G    ++   Q     G + V+AY+S  F    NG   E   L+   KS
Sbjct: 445 -VLLSNMYAAAGRWHCVEKVRQRMKKKGARKVAAYSSVEF----NG---EIHILYGGDKS 496

Query: 234 KGISPDSISYIA----VLSACSHLGWVEKGFYYFHSMFD 268
               P S S +A    +L     +G++ +    FH + D
Sbjct: 497 H---PQSASILAKLEDLLKQMKSMGYIPETDSVFHDVED 532


>gi|297792411|ref|XP_002864090.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297309925|gb|EFH40349.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 534

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/437 (43%), Positives = 286/437 (65%), Gaps = 6/437 (1%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL-DL 135
           N I+  LV+ G    A +V      +++++W ++I G+ +N + +EAL   + M S  D 
Sbjct: 102 NLIIESLVKIGESGLAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKTLKNMLSFSDF 161

Query: 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ 195
           +PN     S L+ACA+LG L +  WV+S +    I+ ++IL +AL+D+YAKCG I+ + +
Sbjct: 162 KPNKFSFASSLAACARLGDLHHAKWVHSLMIDGGIEFNAILSSALVDVYAKCGDIETSRE 221

Query: 196 VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGW 255
           VF S    DVS + + I G A +G + EA  +F  M+++ +SPDSI+++ +L+ACSH G 
Sbjct: 222 VFCSVKRNDVSIWNAMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTACSHCGL 281

Query: 256 VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
           +E+G  YF  M     I+P+L+HY  MVDLLGRAG ++EA   I SMP++PD VIW +LL
Sbjct: 282 LEEGKEYFGLMSRRFSIQPKLEHYGAMVDLLGRAGQVKEAYELIESMPIEPDVVIWRSLL 341

Query: 316 GACRVHRNAEMGQ-RIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIK 374
            + R  +N E+G+  I N+     +   G Y+LLSNIY  T K E+A++VR+ M K  I+
Sbjct: 342 SSSRTFKNPELGEIAIQNL----SKAKSGDYVLLSNIYSSTKKWESAQKVRELMTKEGIR 397

Query: 375 RAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEE 434
           +A G S +E  GV+H F AGD SH +T+ IY+  E +++K K+ G+  +T  V+ D+ EE
Sbjct: 398 KAKGKSWVEFGGVIHRFKAGDTSHIETKAIYKVLEGLIQKTKSEGFVSDTDLVLMDVSEE 457

Query: 435 EKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDR 494
           EKE  + YHSEKLALA+ ++ + PG+ IRI KNIR+CSDCH+ +K VSK+  R I++RDR
Sbjct: 458 EKEENLNYHSEKLALAYVILKSSPGTEIRIQKNIRMCSDCHNWIKAVSKLLNRVITMRDR 517

Query: 495 KHYHHFEDGSCSCLEYW 511
             +H FEDG CSC +YW
Sbjct: 518 IRFHRFEDGLCSCKDYW 534



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 101/235 (42%), Gaps = 41/235 (17%)

Query: 6   SFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLF 65
           S +  V   N +I+     G    A+ V   + D +V++WN MI GYVRN +  E LK  
Sbjct: 93  SLSPGVCNTNLIIESLVKIGESGLAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKTL 152

Query: 66  DKMPQRND-----------------------------------VSWNSILGGLV-----R 85
             M   +D                                   + +N+IL   +     +
Sbjct: 153 KNMLSFSDFKPNKFSFASSLAACARLGDLHHAKWVHSLMIDGGIEFNAILSSALVDVYAK 212

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
            G ++ +  VF  + +  +  W  +I+GFA +G   EA+ +F EM++  + P+S   + L
Sbjct: 213 CGDIETSREVFCSVKRNDVSIWNAMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGL 272

Query: 146 LSACAQLGALDYGNWVYSYIQKK-CIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
           L+AC+  G L+ G   +  + ++  I+       A++D+  + G +  A ++  S
Sbjct: 273 LTACSHCGLLEEGKEYFGLMSRRFSIQPKLEHYGAMVDLLGRAGQVKEAYELIES 327



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 76/157 (48%), Gaps = 12/157 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +++     ++  + ++L+  Y+ CG +  +R VF      DV  WN+MI G+  +G   E
Sbjct: 190 LMIDGGIEFNAILSSALVDVYAKCGDIETSREVFCSVKRNDVSIWNAMITGFATHGLATE 249

Query: 61  GLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLI 111
            +++F +M       + +++  +L      G +++    F  M +R      L  +  ++
Sbjct: 250 AIRVFSEMEAEHVSPDSITFLGLLTACSHCGLLEEGKEYFGLMSRRFSIQPKLEHYGAMV 309

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148
               + G+ KEA  L   ++S+ +EP+  I  SLLS+
Sbjct: 310 DLLGRAGQVKEAYEL---IESMPIEPDVVIWRSLLSS 343


>gi|224099171|ref|XP_002311390.1| predicted protein [Populus trichocarpa]
 gi|222851210|gb|EEE88757.1| predicted protein [Populus trichocarpa]
          Length = 594

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/407 (45%), Positives = 270/407 (66%), Gaps = 1/407 (0%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDA-RWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++K  F + V   NSL+ FY   G V    R VFD+ +  DVVSWN +INGYV++G++ E
Sbjct: 161 MIKFPFEFGVHSWNSLLDFYGKVGEVGIVVRRVFDKIEGPDVVSWNCLINGYVKSGDLDE 220

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
             +LFD+MP+R+ VSW  +L G    G + +A  +F++MPKR+LVSW  LI G+ Q G  
Sbjct: 221 ARRLFDEMPERDVVSWTIMLVGYADAGFLSEASCLFDEMPKRNLVSWSALIKGYIQIGCY 280

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
            +AL LF+EMQ   ++ +  I+ +LLSACA+LGALD G W++ YI K  IK+D+ L  AL
Sbjct: 281 SKALELFKEMQVAKVKMDEVIVTTLLSACARLGALDQGRWLHMYIDKHGIKVDAHLSTAL 340

Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           IDMY+KCG ID+A +VF   GDK V  ++S I GLAM+    +A ELF  M   GI P  
Sbjct: 341 IDMYSKCGRIDMAWKVFQETGDKKVFVWSSMIGGLAMHSFGEKAIELFAKMIECGIEPSE 400

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
           I+YI +L+AC+H G V+ G   F+ M +    KP + HY C+VDLLGRAGLL +A   + 
Sbjct: 401 ITYINILAACTHSGLVDVGLQIFNRMVENQKPKPRMQHYGCIVDLLGRAGLLHDAFRVVE 460

Query: 301 SMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGEN 360
           +MP+K D  IW  LL AC++HRN E+G+++G +LI+ +  +D  Y+L SN+Y    + + 
Sbjct: 461 TMPVKADPAIWRALLSACKLHRNVELGEQVGRILIKMEPQNDMNYVLFSNVYAAVNRWDI 520

Query: 361 AEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQF 407
           + ++R+ M+ R +++ PGCS IEL+G VHEF++ D SH ++Q IY+ 
Sbjct: 521 SGKLRREMKVRGMQKNPGCSSIELNGAVHEFVSRDHSHPQSQVIYEL 567



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/318 (21%), Positives = 122/318 (38%), Gaps = 70/318 (22%)

Query: 86  FGSVDDACRVFNQ--MPKRSLVSWVVLISGFAQNGRPKEALALFREM--QSLDLEPNSAI 141
            GS++ A ++F+   +P+ S + +  +I  +A  G P+EA A +  M      + PN   
Sbjct: 79  LGSLNYAQKLFDTVDIPRNSFM-YTTMIKAYANFGNPREAFAFYSRMLCDQRYVYPNDFT 137

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQK--------------------------------KC 169
              + SAC++   +  G   ++ + K                                K 
Sbjct: 138 FTYVFSACSKFNGVFEGKQAHAQMIKFPFEFGVHSWNSLLDFYGKVGEVGIVVRRVFDKI 197

Query: 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIE------ 223
              D +    LI+ Y K G +D A ++F    ++DV ++T  + G A  G   E      
Sbjct: 198 EGPDVVSWNCLINGYVKSGDLDEARRLFDEMPERDVVSWTIMLVGYADAGFLSEASCLFD 257

Query: 224 -------------------------AFELFENMKSKGISPDSISYIAVLSACSHLGWVEK 258
                                    A ELF+ M+   +  D +    +LSAC+ LG +++
Sbjct: 258 EMPKRNLVSWSALIKGYIQIGCYSKALELFKEMQVAKVKMDEVIVTTLLSACARLGALDQ 317

Query: 259 GFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
           G  + H   D HGIK +      ++D+  + G ++ A         K    +W +++G  
Sbjct: 318 G-RWLHMYIDKHGIKVDAHLSTALIDMYSKCGRIDMAWKVFQETGDK-KVFVWSSMIGGL 375

Query: 319 RVHRNAEMGQRIGNMLIE 336
            +H   E    +   +IE
Sbjct: 376 AMHSFGEKAIELFAKMIE 393


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/541 (35%), Positives = 316/541 (58%), Gaps = 40/541 (7%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP- 69
           V +  +L+  Y+ C ++  A  VF      + V+W+++I G+V    + E   LF  M  
Sbjct: 240 VLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLV 299

Query: 70  ---------------------------------------QRNDVSWNSILGGLVRFGSVD 90
                                                    +  + NS+L    + G ++
Sbjct: 300 EGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLIN 359

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           +A   F+++  +  +S+  L+SG  QNG+ +EA  +F++MQ+ ++EP+ A +VSL+ AC+
Sbjct: 360 EATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACS 419

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
            L AL +G   +  +  + + L++ +C +LIDMYAKCG IDL+ QVF     +DV ++ +
Sbjct: 420 HLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNT 479

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I G  ++G   EA  LF  MK++G +PD +++I +++ACSH G V +G ++F +M   +
Sbjct: 480 MIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKY 539

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
           GI P ++HY CMVDLL R GLL+EA  FI SMP+K D  +WG LLGACR+H+N ++G+++
Sbjct: 540 GILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQV 599

Query: 331 GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHE 390
             ++ +      G ++LLSNI+    + + A EVR   + +  K++PG S IE++G +H 
Sbjct: 600 SRIIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHA 659

Query: 391 FLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALA 450
           F+ GD+SH  +++IY   + I+  IK  GY  +T  V+ D+EEEEKE  + YHSEKLA+A
Sbjct: 660 FVGGDQSHPCSRDIYHELDNIMVDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIA 719

Query: 451 FGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEY 510
           FG++       I + KN+R+C DCH+A+K ++ V  R I +RD   +HHF++G CSC  +
Sbjct: 720 FGVLSLNEDKTIFVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSCGNF 779

Query: 511 W 511
           W
Sbjct: 780 W 780



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/356 (29%), Positives = 158/356 (44%), Gaps = 46/356 (12%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNG----EILEGLKLF 65
           D+FV  +LI  Y  C R   AR VF +    DVV+WN+M+ GY  +G     I   L + 
Sbjct: 134 DLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQ 193

Query: 66  DKMPQR-NDVSWNSILGGLVRFGSVDD--------------------------------- 91
           D    R N  +  S+L  L + G++                                   
Sbjct: 194 DHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKC 253

Query: 92  -----ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV-SL 145
                ACRVF+ MP R+ V+W  LI GF    R  EA  LF++M    L   SA  V S 
Sbjct: 254 KQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASA 313

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
           L  CA L  L  G  +++ I K  I  D     +L+ MYAK G I+ A   F     KD 
Sbjct: 314 LRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDT 373

Query: 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHS 265
            +Y + + G   NG + EAF +F+ M++  + PD  + ++++ ACSHL  ++ G    H 
Sbjct: 374 ISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHG-KCSHG 432

Query: 266 MFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
              + G+  E      ++D+  + G ++ +      MP + D V W T++    +H
Sbjct: 433 SVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPAR-DVVSWNTMIAGYGIH 487



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/247 (31%), Positives = 130/247 (52%), Gaps = 10/247 (4%)

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD-LEPNSAIL 142
            RFG    A  VF +MP R +V+W  +++G+A +G    A+A   +MQ    L PN++ L
Sbjct: 149 ARFGP---ARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTL 205

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDS---ILCAALIDMYAKCGSIDLAMQVFHS 199
           VSLL   AQ GAL  G  +++Y  + C++ +    ++  AL+DMYAKC  +  A +VFH 
Sbjct: 206 VSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHG 265

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIA-VLSACSHLGWVEK 258
              ++   +++ I G  +     EAF LF++M  +G+   S + +A  L  C+ L  +  
Sbjct: 266 MPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHM 325

Query: 259 GFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
           G    H++    GI  +L     ++ +  +AGL+ EA  F   + +K D + +G LL  C
Sbjct: 326 G-TQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVK-DTISYGALLSGC 383

Query: 319 RVHRNAE 325
             +  AE
Sbjct: 384 VQNGKAE 390



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 112/241 (46%), Gaps = 44/241 (18%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++ K+    D+   NSL+  Y+  G + +A   FDE    D +S+ ++++G V+NG+  E
Sbjct: 332 LIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEE 391

Query: 61  GLKLFDKMPQRN---DVSW------------------------------------NSILG 81
              +F KM   N   D++                                     NS++ 
Sbjct: 392 AFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLID 451

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G +D + +VF++MP R +VSW  +I+G+  +G  KEA  LF  M++    P+   
Sbjct: 452 MYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVT 511

Query: 142 LVSLLSACAQLGALDYG-NWVYSYIQKKCI--KLDSILCAALIDMYAKCGSIDLAMQVFH 198
            + L++AC+  G +  G +W  +   K  I  +++  +C  ++D+ A+ G +D A Q   
Sbjct: 512 FICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYIC--MVDLLARGGLLDEAYQFIQ 569

Query: 199 S 199
           S
Sbjct: 570 S 570



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 85/175 (48%), Gaps = 12/175 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+    A +  + NSLI  Y+ CG++  +R VFD+    DVVSWN+MI GY  +G   E 
Sbjct: 434 VIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEA 493

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLIS 112
             LF  M  +    +DV++  ++      G V +    F+ M  +      +  ++ ++ 
Sbjct: 494 TTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVD 553

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK 167
             A+ G   EA   ++ +QS+ L+ +  +  +LL AC     +D G  V   IQK
Sbjct: 554 LLARGGLLDEA---YQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQK 605



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 119/274 (43%), Gaps = 13/274 (4%)

Query: 71  RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM 130
           ++   W   L   +  G +  A +VF+++P     ++  LI  ++  G    A+ L+R M
Sbjct: 32  KDKKQWQQELEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSM 91

Query: 131 QSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSI 190
               + PN      +L AC+ L  L  G  ++++     +  D  +  ALID+Y +C   
Sbjct: 92  LRFRVAPNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARF 151

Query: 191 DLAMQVFHSYGDKDVSAYTSAIFGLAMNG---HSIEAFELFENMKSKGISPDSISYIAVL 247
             A  VF     +DV A+ + + G A +G   H+I    L +     G+ P++ + +++L
Sbjct: 152 GPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIA--HLLDMQDHGGLRPNASTLVSLL 209

Query: 248 SACSHLGWVEKGF----YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP 303
              +  G + +G     Y   +  + +  + ++     ++D+  +   L  A      MP
Sbjct: 210 PLLAQHGALFQGTSIHAYCLRACLEQN--EEQVLIGTALLDMYAKCKQLVYACRVFHGMP 267

Query: 304 MKPDNVIWGTLLGA-CRVHRNAEMGQRIGNMLIE 336
           ++ D V W  L+G      R  E      +ML+E
Sbjct: 268 VRND-VTWSALIGGFVLCDRMTEAFNLFKDMLVE 300


>gi|302780547|ref|XP_002972048.1| hypothetical protein SELMODRAFT_96927 [Selaginella moellendorffii]
 gi|300160347|gb|EFJ26965.1| hypothetical protein SELMODRAFT_96927 [Selaginella moellendorffii]
          Length = 606

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 207/540 (38%), Positives = 294/540 (54%), Gaps = 40/540 (7%)

Query: 12  FVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQR 71
           ++ N L+Q Y  CG V  A  VF    D +V SW  +I+  +RN      L  +  M  R
Sbjct: 67  YLSNKLVQAYGQCGDVESAHAVFARQPDPNVFSWMMLISACLRNARPRAALGHYRAMQLR 126

Query: 72  ---------------------------------------NDVSWNSILGGLVRFGSVDDA 92
                                                  + V  NS+L    R G +DD 
Sbjct: 127 GCHPDAHVVSAIFCAVADTANLELGRSITAPLASTAMLHDPVVANSLLNMYRRCGGMDDF 186

Query: 93  CRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI-LVSLLSACAQ 151
            R F  MP R  VSW  +++G  Q GR   AL L R M        SA+   +L+ AC  
Sbjct: 187 ERAFWAMPSRDEVSWTTMLAGRIQCGREASALELLRVMDQDGFRITSALTFATLVDACGN 246

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSA 211
           L A+  G  ++  I    + +D +L  AL++MYAKCG +D A ++F    + +   ++S 
Sbjct: 247 LSAIAQGRHLHDRIITSGVCIDVVLHTALLNMYAKCGRVDEARELFDQTLEPNNITFSSM 306

Query: 212 IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG 271
           +   A NGH  +A +LF +M+  G  PDS+++  VL ACSH G+V++ ++YF ++    G
Sbjct: 307 VAAYARNGHFGDALKLFWSMEQDGYKPDSVTFTHVLYACSHGGFVDQAWHYFTTLEPDRG 366

Query: 272 IKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIG 331
           I    +H+ C VDLL RAG L +AE F+  MP+ PD+V W +LL ACR+HRN E+G R  
Sbjct: 367 IPLVAEHFGCAVDLLARAGWLADAEKFLNRMPIPPDSVSWMSLLQACRIHRNVEIGARAA 426

Query: 332 NMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEF 391
             +     +  G Y LLSNIY +  K + A +V+K MR R IK+  G S IE++G   EF
Sbjct: 427 EHVFRLAPHRAGPYSLLSNIYSDAGKWDMAAKVQKLMRDRGIKKPGGRSWIEINGKTSEF 486

Query: 392 LAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAF 451
           + GD  H    +I Q  + + K +K +GY  +T+ V+ D EEEEKE ++ +HSEKLA+  
Sbjct: 487 IVGDSWHPDLVQICQEIQRVSKVMKEHGYVPDTKQVLHDAEEEEKEDILYFHSEKLAIGL 546

Query: 452 GLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           GLI T P + I IVKNIR+C DCH+A K++SKV +RKI IRD   +HH EDG+CSC +YW
Sbjct: 547 GLIKTPPKTTISIVKNIRVCPDCHTAAKVISKVTERKIVIRDINLFHHMEDGNCSCRDYW 606



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 110/268 (41%), Gaps = 31/268 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +   +  +D  V NSL+  Y  CG + D    F      D VSW +M+ G ++ G     
Sbjct: 158 LASTAMLHDPVVANSLLNMYRRCGGMDDFERAFWAMPSRDEVSWTTMLAGRIQCGREASA 217

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDAC--------------RVFNQMPKRSLVSW 107
           L+L   M Q        I   L  F ++ DAC              R+        +V  
Sbjct: 218 LELLRVMDQDG----FRITSALT-FATLVDACGNLSAIAQGRHLHDRIITSGVCIDVVLH 272

Query: 108 VVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK 167
             L++ +A+ GR  EA  LF +     LEPN+    S+++A A+ G       ++  +++
Sbjct: 273 TALLNMYAKCGRVDEARELFDQT----LEPNNITFSSMVAAYARNGHFGDALKLFWSMEQ 328

Query: 168 KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFG-----LAMNGHSI 222
              K DS+    ++   +  G +D A   F +          +  FG     LA  G   
Sbjct: 329 DGYKPDSVTFTHVLYACSHGGFVDQAWHYFTTLEPDRGIPLVAEHFGCAVDLLARAGWLA 388

Query: 223 EAFELFENMKSKGISPDSISYIAVLSAC 250
           +A +    M    I PDS+S++++L AC
Sbjct: 389 DAEKFLNRMP---IPPDSVSWMSLLQAC 413



 Score = 45.4 bits (106), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 43/200 (21%), Positives = 81/200 (40%), Gaps = 7/200 (3%)

Query: 122 EALALFREMQSLDLEPNSAILVS-----LLSACAQLGALDYGNWVYSYIQKKCIKLDSIL 176
           E L +   + +L  +P+   LV      LL  CA   AL   + +++ +          L
Sbjct: 9   ERLPVKDVLAALQRQPHPPGLVREAVELLLHRCAAERALPQAHQLHALMLATGALRSRYL 68

Query: 177 CAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGI 236
              L+  Y +CG ++ A  VF    D +V ++   I     N     A   +  M+ +G 
Sbjct: 69  SNKLVQAYGQCGDVESAHAVFARQPDPNVFSWMMLISACLRNARPRAALGHYRAMQLRGC 128

Query: 237 SPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAE 296
            PD+    A+  A +    +E G      +     +   +   + ++++  R G +++ E
Sbjct: 129 HPDAHVVSAIFCAVADTANLELGRSITAPLASTAMLHDPVVANS-LLNMYRRCGGMDDFE 187

Query: 297 NFIASMPMKPDNVIWGTLLG 316
               +MP + D V W T+L 
Sbjct: 188 RAFWAMPSR-DEVSWTTMLA 206


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/550 (35%), Positives = 308/550 (56%), Gaps = 40/550 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K +F ++VFV N+L+ FYS    V DAR +FDE  + D VS+N +I+GY  +G+    
Sbjct: 276 VIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYA 335

Query: 62  LKLFDKMP-----------------QRNDVSW----------------------NSILGG 82
             LF ++                    N + W                      NS++  
Sbjct: 336 FDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDM 395

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G  ++A  +F  +  RS V W  +IS + Q G  +E L LF +M+   +  + A  
Sbjct: 396 YAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATF 455

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            SLL A A + +L  G  ++S+I K     +    +AL+D+YAKCGSI  A+Q F    D
Sbjct: 456 ASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPD 515

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           +++ ++ + I   A NG +    + F+ M   G+ PDS+S++ VLSACSH G VE+G ++
Sbjct: 516 RNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWH 575

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F+SM  ++ + P  +HYA +VD+L R+G   EAE  +A MP+ PD ++W ++L ACR+H+
Sbjct: 576 FNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHK 635

Query: 323 NAEMGQRIGNMLIESDQNHDGR-YILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
           N E+ +R  + L   ++  D   Y+ +SNIY    + EN  +V K MR R +K+ P  S 
Sbjct: 636 NQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSW 695

Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIG 441
           +E+    H F A DR H + +EI +  + + K ++  GY  +T   + + +E+ K   + 
Sbjct: 696 VEIKHETHMFSANDRCHPQIEEIRKKIDMLTKTMEELGYKPDTSCALHNEDEKFKVESLK 755

Query: 442 YHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
           YHSE+LA+AF LI T  GS I ++KN+R C DCH+A+K++SK+  R+I++RD   +HHF 
Sbjct: 756 YHSERLAIAFALISTPEGSPILVMKNLRACIDCHAAIKVISKIVGREITVRDSTRFHHFR 815

Query: 502 DGSCSCLEYW 511
           DG CSC ++W
Sbjct: 816 DGFCSCGDFW 825



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/230 (34%), Positives = 131/230 (56%), Gaps = 11/230 (4%)

Query: 29  DARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGS 88
           DAR +     D D    N  +  +++NGE+ +  +LF+KMP +N VS N ++ G V+ G+
Sbjct: 40  DAR-IVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGN 98

Query: 89  VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148
           + +A ++F+ M +R+ V+W +LI G++Q  + KEA  LF +MQ    EP+    V+LLS 
Sbjct: 99  LGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSG 158

Query: 149 CAQLGALDYGNWVYSYIQKKCIKL--DS--ILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           C      + GN + + +Q + IKL  DS  I+   L+D Y K   +DLA Q+F    + D
Sbjct: 159 C---NGHEMGNQI-TQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEID 214

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
             +Y + I G + +G   +A  LF  M++ G+ P   ++ AVL  C+++G
Sbjct: 215 SVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVL--CANIG 262



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 160/363 (44%), Gaps = 41/363 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K  +   + V N+L+  Y    R+  A  +F E  ++D VS+N+MI GY ++G   + 
Sbjct: 175 IIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKA 234

Query: 62  LKLFDKMPQ----------------------------------RNDVSW-----NSILGG 82
           + LF +M                                    + +  W     N++L  
Sbjct: 235 VNLFVEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDF 294

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             +  SV DA ++F++MP++  VS+ V+ISG+A +G+ K A  LFRE+Q    +      
Sbjct: 295 YSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPF 354

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            ++LS  +     + G  +++         + ++  +L+DMYAKCG  + A  +F +   
Sbjct: 355 ATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTH 414

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           +    +T+ I      G   E  +LF  M+   +  D  ++ ++L A + +  +  G   
Sbjct: 415 RSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLG-KQ 473

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
            HS     G    +   + ++D+  + G +++A      MP + + V W  ++ A   + 
Sbjct: 474 LHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDR-NIVSWNAMISAYAQNG 532

Query: 323 NAE 325
            AE
Sbjct: 533 EAE 535



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 155/343 (45%), Gaps = 43/343 (12%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM----PQ 70
           N +I  Y   G + +AR +FD   +   V+W  +I GY +  +  E  +LF +M     +
Sbjct: 87  NMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTE 146

Query: 71  RNDVSWNSILGG----------------LVRFG-------------------SVDDACRV 95
            + V++ ++L G                +++ G                    +D AC++
Sbjct: 147 PDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQL 206

Query: 96  FNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGAL 155
           F +MP+   VS+  +I+G++++G  ++A+ LF EMQ+  L+P      ++L A   L  +
Sbjct: 207 FKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANIGLDDI 266

Query: 156 DYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGL 215
             G  ++S++ K     +  +  AL+D Y+K  S+  A ++F    ++D  +Y   I G 
Sbjct: 267 VLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGY 326

Query: 216 AMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSH-LGWVEKGFYYFHSMFDVHGIKP 274
           A +G    AF+LF  ++          +  +LS  S+ L W E G    H+   V     
Sbjct: 327 AWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDW-EMG-RQIHAQTIVTTADS 384

Query: 275 ELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
           E+     +VD+  + G  EEAE    ++  +   V W  ++ A
Sbjct: 385 EILVGNSLVDMYAKCGKFEEAEMIFTNLTHR-SAVPWTAMISA 426


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/541 (35%), Positives = 316/541 (58%), Gaps = 40/541 (7%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP- 69
           V +  +L+  Y+ C ++  A  VF      + V+W+++I G+V    + E   LF  M  
Sbjct: 240 VLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLV 299

Query: 70  ---------------------------------------QRNDVSWNSILGGLVRFGSVD 90
                                                    +  + NS+L    + G ++
Sbjct: 300 EGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLIN 359

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           +A   F+++  +  +S+  L+SG  QNG+ +EA  +F++MQ+ ++EP+ A +VSL+ AC+
Sbjct: 360 EATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACS 419

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
            L AL +G   +  +  + + L++ +C +LIDMYAKCG IDL+ QVF     +DV ++ +
Sbjct: 420 HLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNT 479

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I G  ++G   EA  LF  MK++G +PD +++I +++ACSH G V +G ++F +M   +
Sbjct: 480 MIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKY 539

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
           GI P ++HY CMVDLL R GLL+EA  FI SMP+K D  +WG LLGACR+H+N ++G+++
Sbjct: 540 GILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQV 599

Query: 331 GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHE 390
             ++ +      G ++LLSNI+    + + A EVR   + +  K++PG S IE++G +H 
Sbjct: 600 SRIIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHA 659

Query: 391 FLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALA 450
           F+ GD+SH  +++IY   + I+  IK  GY  +T  V+ D+EEEEKE  + YHSEKLA+A
Sbjct: 660 FVGGDQSHPCSRDIYHELDNIMVDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIA 719

Query: 451 FGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEY 510
           FG++       I + KN+R+C DCH+A+K ++ V  R I +RD   +HHF++G CSC  +
Sbjct: 720 FGVLSLNEDKTIFVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSCGNF 779

Query: 511 W 511
           W
Sbjct: 780 W 780



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/356 (29%), Positives = 158/356 (44%), Gaps = 46/356 (12%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNG----EILEGLKLF 65
           D+FV  +LI  Y  C R   AR VF +    DVV+WN+M+ GY  +G     I   L + 
Sbjct: 134 DLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQ 193

Query: 66  DKMPQR-NDVSWNSILGGLVRFGSVDD--------------------------------- 91
           D    R N  +  S+L  L + G++                                   
Sbjct: 194 DHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKC 253

Query: 92  -----ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV-SL 145
                ACRVF+ MP R+ V+W  LI GF    R  EA  LF++M    L   SA  V S 
Sbjct: 254 KQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASA 313

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
           L  CA L  L  G  +++ I K  I  D     +L+ MYAK G I+ A   F     KD 
Sbjct: 314 LRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDT 373

Query: 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHS 265
            +Y + + G   NG + EAF +F+ M++  + PD  + ++++ ACSHL  ++ G    H 
Sbjct: 374 ISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHG-KCSHG 432

Query: 266 MFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
              + G+  E      ++D+  + G ++ +      MP + D V W T++    +H
Sbjct: 433 SVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPAR-DVVSWNTMIAGYGIH 487



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/247 (31%), Positives = 130/247 (52%), Gaps = 10/247 (4%)

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD-LEPNSAIL 142
            RFG    A  VF +MP R +V+W  +++G+A +G    A+A   +MQ    L PN++ L
Sbjct: 149 ARFGP---ARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTL 205

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDS---ILCAALIDMYAKCGSIDLAMQVFHS 199
           VSLL   AQ GAL  G  +++Y  + C++ +    ++  AL+DMYAKC  +  A +VFH 
Sbjct: 206 VSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHG 265

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIA-VLSACSHLGWVEK 258
              ++   +++ I G  +     EAF LF++M  +G+   S + +A  L  C+ L  +  
Sbjct: 266 MPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHM 325

Query: 259 GFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
           G    H++    GI  +L     ++ +  +AGL+ EA  F   + +K D + +G LL  C
Sbjct: 326 G-TQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVK-DTISYGALLSGC 383

Query: 319 RVHRNAE 325
             +  AE
Sbjct: 384 VQNGKAE 390



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 112/241 (46%), Gaps = 44/241 (18%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++ K+    D+   NSL+  Y+  G + +A   FDE    D +S+ ++++G V+NG+  E
Sbjct: 332 LIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEE 391

Query: 61  GLKLFDKMPQRN---DVSW------------------------------------NSILG 81
              +F KM   N   D++                                     NS++ 
Sbjct: 392 AFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLID 451

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G +D + +VF++MP R +VSW  +I+G+  +G  KEA  LF  M++    P+   
Sbjct: 452 MYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVT 511

Query: 142 LVSLLSACAQLGALDYG-NWVYSYIQKKCI--KLDSILCAALIDMYAKCGSIDLAMQVFH 198
            + L++AC+  G +  G +W  +   K  I  +++  +C  ++D+ A+ G +D A Q   
Sbjct: 512 FICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYIC--MVDLLARGGLLDEAYQFIQ 569

Query: 199 S 199
           S
Sbjct: 570 S 570



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 85/175 (48%), Gaps = 12/175 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+    A +  + NSLI  Y+ CG++  +R VFD+    DVVSWN+MI GY  +G   E 
Sbjct: 434 VIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEA 493

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLIS 112
             LF  M  +    +DV++  ++      G V +    F+ M  +      +  ++ ++ 
Sbjct: 494 TTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVD 553

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK 167
             A+ G   EA   ++ +QS+ L+ +  +  +LL AC     +D G  V   IQK
Sbjct: 554 LLARGGLLDEA---YQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQK 605



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 119/274 (43%), Gaps = 13/274 (4%)

Query: 71  RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM 130
           ++   W   L   +  G +  A +VF+++P     ++  LI  ++  G    A+ L+R M
Sbjct: 32  KDKKQWQQELEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSM 91

Query: 131 QSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSI 190
               + PN      +L AC+ L  L  G  ++++     +  D  +  ALID+Y +C   
Sbjct: 92  LRFRVAPNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARF 151

Query: 191 DLAMQVFHSYGDKDVSAYTSAIFGLAMNG---HSIEAFELFENMKSKGISPDSISYIAVL 247
             A  VF     +DV A+ + + G A +G   H+I    L +     G+ P++ + +++L
Sbjct: 152 GPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIA--HLLDMQDHGGLRPNASTLVSLL 209

Query: 248 SACSHLGWVEKGF----YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP 303
              +  G + +G     Y   +  + +  + ++     ++D+  +   L  A      MP
Sbjct: 210 PLLAQHGALFQGTSIHAYCLRACLEQN--EEQVLIGTALLDMYAKCKQLVYACRVFHGMP 267

Query: 304 MKPDNVIWGTLLGA-CRVHRNAEMGQRIGNMLIE 336
           ++ D V W  L+G      R  E      +ML+E
Sbjct: 268 VRND-VTWSALIGGFVLCDRMTEAFNLFKDMLVE 300


>gi|357111415|ref|XP_003557509.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Brachypodium distachyon]
          Length = 615

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/523 (39%), Positives = 308/523 (58%), Gaps = 27/523 (5%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDL-----------DVVSWNSMING--YVRNG 56
           DV   N+L++ Y+ C     AR   +E+  +           D  ++ S++      R G
Sbjct: 99  DVVWYNTLLRGYARCSAAGGARPPAEEAARVFVRMLEEGVAPDTYTFVSLLKACAAARAG 158

Query: 57  EILEGLKLFDKMPQRNDVSWNSILGGLVRF----GSVDDACRVFNQMPKRSLVSWVVLIS 112
           E  EG +      +        +L  L+      G    A  +F ++    +VS+  +I+
Sbjct: 159 E--EGRQAHGVAVKVGAAEHEYVLPTLINMYAECGDARAARTMFGRVDGECVVSYNAMIT 216

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKL 172
              ++ RP EAL LFREMQ+  L+  S  L+S+LSACA LGAL+ G W++ Y++K  ++L
Sbjct: 217 AAVRSSRPGEALVLFREMQAKGLKLTSVTLISVLSACALLGALELGRWIHEYVRK--VQL 274

Query: 173 DSIL--CAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFEN 230
           DS++    ALIDMY KCGS++ A+ VF     +D  A++  I   A + +  EA  LFE 
Sbjct: 275 DSLVKVNTALIDMYGKCGSLEDAISVFQGMESRDRQAWSVMIVAYANHSYGREAISLFEE 334

Query: 231 MKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAG 290
           MK +GI PD ++++ VL ACSH G V +G  YF SM +  G+ P + HY C+ DLL R+G
Sbjct: 335 MKKQGIKPDDVTFLGVLYACSHSGLVSEGLQYFDSMREF-GLVPGIKHYGCVADLLARSG 393

Query: 291 LLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSN 350
            L+ A  FI  +P+KP  ++W TLL AC    +A++G+++   ++E D +H G Y++ SN
Sbjct: 394 QLDRAYEFIDELPIKPTAILWRTLLSACGSRGDADLGKQVFERILELDDSHGGDYVIFSN 453

Query: 351 IYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEE 410
           +   T + E    VRK M ++ + + PGCS IE+D  VHEF AGD  H K+ +  +  + 
Sbjct: 454 LCANTGRWEEMNRVRKLMNEKGVVKVPGCSSIEVDNRVHEFFAGDGRHPKSLDARRMVDG 513

Query: 411 IVKKIKNYGYNVETRSVMFDIE--EEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNI 468
           +++++K  GY V   S +F +E  EEEK   + YHSEKLA++FGL+ T PG+ +R+VKN+
Sbjct: 514 VIEQLKLAGY-VPNTSHVFHVEMGEEEKAVSLRYHSEKLAISFGLLNTSPGTTLRVVKNL 572

Query: 469 RICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           R+C DCHS  KLVS VF R+I +RD   +HHFEDG CSC +YW
Sbjct: 573 RVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 615



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 113/248 (45%), Gaps = 10/248 (4%)

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWV-VLISGFAQ-----NGRP--KEALALFREMQSL 133
           G  +   +  A +VF+++P    V W   L+ G+A+       RP  +EA  +F  M   
Sbjct: 77  GAAKPAQLSYARQVFDRIPGPGDVVWYNTLLRGYARCSAAGGARPPAEEAARVFVRMLEE 136

Query: 134 DLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLA 193
            + P++   VSLL ACA   A + G   +    K        +   LI+MYA+CG    A
Sbjct: 137 GVAPDTYTFVSLLKACAAARAGEEGRQAHGVAVKVGAAEHEYVLPTLINMYAECGDARAA 196

Query: 194 MQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL 253
             +F     + V +Y + I     +    EA  LF  M++KG+   S++ I+VLSAC+ L
Sbjct: 197 RTMFGRVDGECVVSYNAMITAAVRSSRPGEALVLFREMQAKGLKLTSVTLISVLSACALL 256

Query: 254 GWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGT 313
           G +E G  + H       +   +     ++D+ G+ G LE+A +    M  + D   W  
Sbjct: 257 GALELG-RWIHEYVRKVQLDSLVKVNTALIDMYGKCGSLEDAISVFQGMESR-DRQAWSV 314

Query: 314 LLGACRVH 321
           ++ A   H
Sbjct: 315 MIVAYANH 322



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 123/313 (39%), Gaps = 76/313 (24%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + VK   A   +V  +LI  Y+ CG  R AR +F   D   VVS+N+MI   VR+    E
Sbjct: 167 VAVKVGAAEHEYVLPTLINMYAECGDARAARTMFGRVDGECVVSYNAMITAAVRSSRPGE 226

Query: 61  GLKLFDKMPQR----------NDVSWNSILGGLV-------------------------- 84
            L LF +M  +          + +S  ++LG L                           
Sbjct: 227 ALVLFREMQAKGLKLTSVTLISVLSACALLGALELGRWIHEYVRKVQLDSLVKVNTALID 286

Query: 85  ---RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + GS++DA  VF  M  R   +W V+I  +A +   +EA++LF EM+   ++P+   
Sbjct: 287 MYGKCGSLEDAISVFQGMESRDRQAWSVMIVAYANHSYGREAISLFEEMKKQGIKPDDVT 346

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
            + +L AC+  G +  G   +  +++  +         + D+ A+ G +D          
Sbjct: 347 FLGVLYACSHSGLVSEGLQYFDSMREFGLVPGIKHYGCVADLLARSGQLD---------- 396

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
                                 A+E  + +    I P +I +  +LSAC   G  + G  
Sbjct: 397 ---------------------RAYEFIDELP---IKPTAILWRTLLSACGSRGDADLGKQ 432

Query: 262 YFHSMF---DVHG 271
            F  +    D HG
Sbjct: 433 VFERILELDDSHG 445


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/550 (35%), Positives = 308/550 (56%), Gaps = 40/550 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K +F ++VFV N+L+ FYS    V DAR +FDE  + D VS+N +I+GY  +G+    
Sbjct: 236 VIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYA 295

Query: 62  LKLFDKMP-----------------QRNDVSW----------------------NSILGG 82
             LF ++                    N + W                      NS++  
Sbjct: 296 FDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDM 355

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G  ++A  +F  +  RS V W  +IS + Q G  +E L LF +M+   +  + A  
Sbjct: 356 YAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATF 415

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            SLL A A + +L  G  ++S+I K     +    +AL+D+YAKCGSI  A+Q F    D
Sbjct: 416 ASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPD 475

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           +++ ++ + I   A NG +    + F+ M   G+ PDS+S++ VLSACSH G VE+G ++
Sbjct: 476 RNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWH 535

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F+SM  ++ + P  +HYA +VD+L R+G   EAE  +A MP+ PD ++W ++L ACR+H+
Sbjct: 536 FNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHK 595

Query: 323 NAEMGQRIGNMLIESDQNHDGR-YILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
           N E+ +R  + L   ++  D   Y+ +SNIY    + EN  +V K MR R +K+ P  S 
Sbjct: 596 NQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSW 655

Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIG 441
           +E+    H F A DR H + +EI +  + + K ++  GY  +T   + + +E+ K   + 
Sbjct: 656 VEIKHETHMFSANDRCHPQIEEIRKKIDMLTKTMEELGYKPDTSCALHNEDEKFKVESLK 715

Query: 442 YHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
           YHSE+LA+AF LI T  GS I ++KN+R C DCH+A+K++SK+  R+I++RD   +HHF 
Sbjct: 716 YHSERLAIAFALISTPEGSPILVMKNLRACIDCHAAIKVISKIVGREITVRDSTRFHHFR 775

Query: 502 DGSCSCLEYW 511
           DG CSC ++W
Sbjct: 776 DGFCSCGDFW 785



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 106/188 (56%), Gaps = 9/188 (4%)

Query: 29  DARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGS 88
           DAR +     D D    N  +  +++NGE+ +  +LF+KMP +N VS N ++ G V+ G+
Sbjct: 35  DAR-IVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGN 93

Query: 89  VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148
           + +A ++F+ M +R+ V+W +LI G++Q  + KEA  LF +MQ    EP+    V+LLS 
Sbjct: 94  LGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSG 153

Query: 149 CAQLGALDYGNWVYSYIQKKCIKL--DS--ILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           C      + GN + + +Q + IKL  DS  I+   L+D Y K   +DLA Q+F    + D
Sbjct: 154 C---NGHEMGNQI-TQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEID 209

Query: 205 VSAYTSAI 212
              + + +
Sbjct: 210 SFTFAAVL 217



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 154/358 (43%), Gaps = 51/358 (14%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +VK  F  D    N  +  +   G +  AR +F++    + VS N MI+GYV++G + E 
Sbjct: 38  IVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEA 97

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPK----RSLVSWVVLISG---- 113
            KLFD M +R  V+W  ++GG  +     +A  +F QM +       V++V L+SG    
Sbjct: 98  RKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGH 157

Query: 114 -------------------------------FAQNGRPKEALALFREMQSLDLEPNSAIL 142
                                          + ++ R   A  LF+EM  +D    +A+L
Sbjct: 158 EMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSFTFAAVL 217

Query: 143 VSLLSACAQLGALD--YGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
                 CA +G  D   G  ++S++ K     +  +  AL+D Y+K  S+  A ++F   
Sbjct: 218 ------CANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEM 271

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSH-LGWVEKG 259
            ++D  +Y   I G A +G    AF+LF  ++          +  +LS  S+ L W E G
Sbjct: 272 PEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDW-EMG 330

Query: 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
               H+   V     E+     +VD+  + G  EEAE    ++  +   V W  ++ A
Sbjct: 331 -RQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHR-SAVPWTAMISA 386



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/329 (23%), Positives = 156/329 (47%), Gaps = 8/329 (2%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K  +   + V N+L+  Y    R+  A  +F E  ++D  ++ +++   +   +I+ G
Sbjct: 170 IIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSFTFAAVLCANIGLDDIVLG 229

Query: 62  LKLFDKMPQRNDVSWN-----SILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQ 116
            ++   + + N V WN     ++L    +  SV DA ++F++MP++  VS+ V+ISG+A 
Sbjct: 230 QQIHSFVIKTNFV-WNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAW 288

Query: 117 NGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSIL 176
           +G+ K A  LFRE+Q    +       ++LS  +     + G  +++         + ++
Sbjct: 289 DGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILV 348

Query: 177 CAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGI 236
             +L+DMYAKCG  + A  +F +   +    +T+ I      G   E  +LF  M+   +
Sbjct: 349 GNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASV 408

Query: 237 SPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAE 296
             D  ++ ++L A + +  +  G    HS     G    +   + ++D+  + G +++A 
Sbjct: 409 IADQATFASLLRASASIASLSLG-KQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAV 467

Query: 297 NFIASMPMKPDNVIWGTLLGACRVHRNAE 325
                MP + + V W  ++ A   +  AE
Sbjct: 468 QTFQEMPDR-NIVSWNAMISAYAQNGEAE 495


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/513 (38%), Positives = 289/513 (56%), Gaps = 35/513 (6%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           VK     D  V  +LI  Y  CG+  +   VFDES  +DV S N++I G  RN ++ E L
Sbjct: 184 VKAGCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQVCEAL 243

Query: 63  KLF----DKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNG 118
           +LF    D+  + N VSW SI+           AC V                    QNG
Sbjct: 244 RLFKEFVDRGVELNVVSWTSIV-----------ACCV--------------------QNG 272

Query: 119 RPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCA 178
           +  EA+  FREMQ+   EPNS  +  +L A A + AL +G   + +  +K    D  + +
Sbjct: 273 KDLEAVEFFREMQAQGTEPNSVTIPCVLPAFANVAALMHGRSAHCFALRKGFLHDVYVSS 332

Query: 179 ALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISP 238
           AL+DMYAKCG +  A  +F +   ++V ++ + I G AM G ++ A  +F +M      P
Sbjct: 333 ALVDMYAKCGRVKDARIIFDTMVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKP 392

Query: 239 DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENF 298
           D +++  +L+AC+  G  E+G +YF  M + +G+ P ++HYACMV LLGRAG L+EA + 
Sbjct: 393 DMVTFTCLLAACTQAGLTEEGRHYFKEMHNEYGVSPRMEHYACMVTLLGRAGKLDEAYDL 452

Query: 299 IASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKG 358
           I+ MP +PD  IWG+LLG+CRVH N ++ +     L   +  + G Y+LLSNIY      
Sbjct: 453 ISDMPFEPDAYIWGSLLGSCRVHGNVDLAEVAAEKLFHLEPENAGNYVLLSNIYASKKMW 512

Query: 359 ENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNY 418
           +    VR+ M+   +K+  GCS IE+   VH  LAGD SH     I +   ++  +++  
Sbjct: 513 DRVNRVREMMKDVGLKKEKGCSWIEIKNKVHMLLAGDDSHPMMTAIIEKINQLNIQMRKL 572

Query: 419 GYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAM 478
           G+   T  V+ D+EE+EK+ ++  HSEKLA+A GLI T PG+ +R++KN+RIC DCH AM
Sbjct: 573 GFVPSTDFVLHDVEEQEKDDILAVHSEKLAVALGLISTSPGTTLRVIKNLRICGDCHEAM 632

Query: 479 KLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           K +S    R+IS+RD   +HHF  G CSC ++W
Sbjct: 633 KFISSFEGREISVRDTNRFHHFSGGKCSCGDFW 665



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 120/255 (47%), Gaps = 9/255 (3%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMP--QRNDVSWNSILGGLVRFGSVDDACRVFNQMPK-- 101
           +S+++ Y+R G       LFD MP  QR  V W++++      G  + A R+  +M +  
Sbjct: 56  SSLLHAYLRLGTTGNARALFDGMPRPQRTVVGWSALVAAHAARGDAEGAWRLLEEMRRDG 115

Query: 102 ---RSLVSWVVLISGFAQNGRPKEALALFREMQSLDL-EPNSAILVSLLSACAQLGALDY 157
               ++++W  L+SG  ++GR ++A+     M    L  P++  +   LSA   +G +  
Sbjct: 116 GVEPNVITWNGLVSGLNRSGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSV 175

Query: 158 GNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAM 217
           G  ++ Y  K   + D+ +  ALIDMY KCG     ++VF      DV++  + I GL+ 
Sbjct: 176 GQQLHGYAVKAGCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSR 235

Query: 218 NGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELD 277
           N    EA  LF+    +G+  + +S+ ++++ C   G   +   +F  M    G +P   
Sbjct: 236 NAQVCEALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREM-QAQGTEPNSV 294

Query: 278 HYACMVDLLGRAGLL 292
              C++        L
Sbjct: 295 TIPCVLPAFANVAAL 309


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/549 (36%), Positives = 310/549 (56%), Gaps = 40/549 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           VK  F+ +    N+L+  YS CG +  A+ VF E     VVS+ SMI GY R G   E +
Sbjct: 323 VKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAV 382

Query: 63  KLFDKMPQR----------------------------------NDVSW-----NSILGGL 83
           KLF++M +                                   ND+ +     N+++   
Sbjct: 383 KLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMY 442

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQ-SLDLEPNSAIL 142
            + GS+ +A  VF++M  + ++SW  +I G+++N    EAL+LF  +       P+   +
Sbjct: 443 AKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTV 502

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
             +L ACA L A D G  ++ YI +     D  +  +L+DMYAKCG++ LA  +F     
Sbjct: 503 ACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITS 562

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           KD+ ++T  I G  M+G   EA  LF  M+  GI PD IS++++L ACSH G V++G+ +
Sbjct: 563 KDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRF 622

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F+ M     I+P ++HYAC+VD+L R G L +A  FI +MP+ PD  IWG LL  CR+H 
Sbjct: 623 FNIMRHECKIEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIHH 682

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           + ++ +R+   + E +  + G Y+L++NIY E  K E  + +RK + +R +++ PGCS I
Sbjct: 683 DVKLAERVAEKVFELEPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQRGLRKNPGCSWI 742

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E+ G V+ F+AGD S+ +T++I  F   +  ++   GY+  T+  + D EE EKE  +  
Sbjct: 743 EIKGRVNIFVAGDSSNPETEKIEAFLRGVRARMIEEGYSPLTKYALIDAEEMEKEEALCG 802

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSEKLA+A G+I +  G +IR+ KN+R+C DCH   K +SK+ +R+I +RD   +H F+D
Sbjct: 803 HSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKD 862

Query: 503 GSCSCLEYW 511
           G CSC  +W
Sbjct: 863 GHCSCRGFW 871



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 112/360 (31%), Positives = 170/360 (47%), Gaps = 42/360 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K+ F     V NSL+ FY    RV  AR VFDE  + DV+SWNS+INGYV NG   +G
Sbjct: 221 ILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKG 280

Query: 62  LKLFDKMP---------------------------------------QRNDVSWNSILGG 82
           L +F +M                                         R D   N++L  
Sbjct: 281 LSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDM 340

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G +D A  VF +M  RS+VS+  +I+G+A+ G   EA+ LF EM+   + P+   +
Sbjct: 341 YSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTV 400

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            ++L+ CA+   LD G  V+ +I++  +  D  +  AL+DMYAKCGS+  A  VF     
Sbjct: 401 TAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRV 460

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFE-NMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
           KD+ ++ + I G + N ++ EA  LF   +  K  SPD  +   VL AC+ L   +KG  
Sbjct: 461 KDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKG-R 519

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
             H     +G   +      +VD+  + G L  A      +  K D V W  ++    +H
Sbjct: 520 EIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSK-DLVSWTVMIAGYGMH 578



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 98/353 (27%), Positives = 169/353 (47%), Gaps = 43/353 (12%)

Query: 5   NSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKL 64
           N F  D  + + L   Y+ CG +++A  VFD+      + WN ++N   ++G+    + L
Sbjct: 123 NGFVLDSNLGSKLALMYTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGL 182

Query: 65  FDKM----------------------------------------PQRNDVSWNSILGGLV 84
           F KM                                         +RN V  NS++   +
Sbjct: 183 FKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVG-NSLVAFYL 241

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
           +   VD A +VF++M +R ++SW  +I+G+  NG  ++ L++F +M    +E + A +VS
Sbjct: 242 KNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVS 301

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           + + CA    +  G  V+ +  K C   +   C  L+DMY+KCG +D A  VF     + 
Sbjct: 302 VFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRS 361

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           V +YTS I G A  G + EA +LFE M+ +GISPD  +  AVL+ C+    +++G    H
Sbjct: 362 VVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEG-KRVH 420

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
                + +  ++     ++D+  + G + EAE   + M +K D + W T++G 
Sbjct: 421 EWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRVK-DIISWNTVIGG 472



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 115/234 (49%), Gaps = 43/234 (18%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           + +N   +D+FV N+L+  Y+ CG +R+A  VF E    D++SWN++I GY +N    E 
Sbjct: 423 IKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYANEA 482

Query: 62  LKLFDKM-------PQRNDVSW---------------------------------NSILG 81
           L LF+ +       P    V+                                  NS++ 
Sbjct: 483 LSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVD 542

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G++  A  +F+ +  + LVSW V+I+G+  +G  KEA+ALF +M+   +EP+   
Sbjct: 543 MYAKCGALLLARLLFDDITSKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEIS 602

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSIL--CAALIDMYAKCGSIDLA 193
            VSLL AC+  G +D G W +  I +   K++  +   A ++DM A+ G++  A
Sbjct: 603 FVSLLYACSHSGLVDEG-WRFFNIMRHECKIEPTVEHYACIVDMLARTGNLSKA 655



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 71/158 (44%), Gaps = 2/158 (1%)

Query: 102 RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161
           RS+      +  F ++G  K A+ L       D++P +  L S+L  CA   +L  G  V
Sbjct: 59  RSVTDANTQLRRFCESGNLKNAVKLLHVSGKWDIDPRT--LCSVLQLCADSKSLKDGKEV 116

Query: 162 YSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHS 221
            ++I+     LDS L + L  MY  CG +  A +VF     +    +   +  LA +G  
Sbjct: 117 DNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGDF 176

Query: 222 IEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
             +  LF+ M S G+  DS ++  V  + S L  V  G
Sbjct: 177 SGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGG 214


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/550 (36%), Positives = 306/550 (55%), Gaps = 39/550 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + +KN F  D++V   LI  YS    +  AR + +  +  DVVSW SMI GYV++    E
Sbjct: 371 LSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEE 430

Query: 61  GLKLFDKMPQ--------------------------------------RNDVS-WNSILG 81
            L  F +M                                          D+S WN+++ 
Sbjct: 431 ALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVN 490

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              R G  ++A  +F ++  +  ++W  LISGF Q+   ++AL +F +M     + N   
Sbjct: 491 LYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFT 550

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
            +S +SA A L  +  G  V+    K     ++ +  ALI +Y KCGSI+ A  +F    
Sbjct: 551 FISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMS 610

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
            ++  ++ + I   + +G  +EA +LF+ MK +G+ P+ +++I VL+ACSH+G VE+G  
Sbjct: 611 LRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLS 670

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           YF SM +V+G+ P  DHYAC+VD+LGRAG L+ A  F+  MP+  + +IW TLL AC+VH
Sbjct: 671 YFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVH 730

Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
           +N E+G+     L+E + +    Y+LLSN Y  T K  N ++VRK M+ R I++ PG S 
Sbjct: 731 KNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSW 790

Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIG 441
           IE+   VH F  GDR H  + +IY+F  E+  ++   GY  E  ++  + E+E+K+    
Sbjct: 791 IEVKNAVHAFFVGDRLHPLSDQIYKFLSELNDRLSKIGYKQENPNLFHEKEQEQKDPTAF 850

Query: 442 YHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
            HSEKLA+AFGL+   P   +R++KN+R+C DCHS MK  S+V +R+I +RD   +HHF 
Sbjct: 851 VHSEKLAVAFGLMTLPPCIPLRVIKNLRVCDDCHSWMKFTSEVTRREIVLRDVYRFHHFN 910

Query: 502 DGSCSCLEYW 511
            GSCSC +YW
Sbjct: 911 SGSCSCGDYW 920



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/354 (28%), Positives = 159/354 (44%), Gaps = 41/354 (11%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           V      D  + N LI  Y+  G V  AR VF E    D VSW +M++GY + G   E  
Sbjct: 70  VVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAF 129

Query: 63  KLFDKM------PQRNDVS---------------------------------WNSILGGL 83
           +L+ +M      P    +S                                  N+++   
Sbjct: 130 RLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALY 189

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
           + FGS   A RVF  M     V++  LISG AQ G  + AL +F EMQ   L P+   + 
Sbjct: 190 LGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVA 249

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           SLL+ACA +G L  G  ++SY+ K  +  D I   +L+D+Y KCG I+ A  +F+     
Sbjct: 250 SLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRT 309

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           +V  +   +          ++FE+F  M++ GI P+  +Y  +L  C+  G +E G    
Sbjct: 310 NVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELG-EQI 368

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
           HS+   +G + ++     ++D+  +   L++A   I  M  K D V W +++  
Sbjct: 369 HSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARK-ILEMLEKRDVVSWTSMIAG 421



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/359 (23%), Positives = 163/359 (45%), Gaps = 41/359 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K   ++D   + SL+  Y  CG +  A  +F+  D  +VV WN M+  Y +  ++ + 
Sbjct: 271 LLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKS 330

Query: 62  LKLFDKMP----QRNDVSWNSIL-------------------------------GGLV-- 84
            ++F +M       N  ++  IL                               G L+  
Sbjct: 331 FEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDM 390

Query: 85  --RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             ++  +D A ++   + KR +VSW  +I+G+ Q+   +EALA F+EMQ   + P++  L
Sbjct: 391 YSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGL 450

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S  SACA + A+  G  +++ +       D  +   L+++YA+CG  + A  +F     
Sbjct: 451 ASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDH 510

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           KD   +   I G   +    +A  +F  M   G   +  ++I+ +SA ++L  +++G   
Sbjct: 511 KDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANLADIKQG-KQ 569

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            H      G   E +    ++ L G+ G +E+A+   + M ++ + V W T++ +C  H
Sbjct: 570 VHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLR-NEVSWNTIITSCSQH 627



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 162/367 (44%), Gaps = 44/367 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V K +F  + FV N+LI  Y   G  + A  VF +    D V++N++I+G+ + G     
Sbjct: 170 VYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECA 229

Query: 62  LKLFDKMPQ---RND------------------------------------VSWNSILGG 82
           L++FD+M     R D                                    ++  S+L  
Sbjct: 230 LQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDL 289

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
            V+ G ++ A  +FN   + ++V W +++  + Q     ++  +F +MQ+  + PN    
Sbjct: 290 YVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTY 349

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
             +L  C   G ++ G  ++S   K   + D  +   LIDMY+K   +D A ++      
Sbjct: 350 PCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEK 409

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           +DV ++TS I G   +    EA   F+ M+  G+ PD+I   +  SAC+ +  + +G   
Sbjct: 410 RDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGL-Q 468

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL---GACR 319
            H+   V G   ++  +  +V+L  R G  EEA +    +  K D + W  L+   G  R
Sbjct: 469 IHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHK-DEITWNGLISGFGQSR 527

Query: 320 VHRNAEM 326
           ++  A M
Sbjct: 528 LYEQALM 534



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 68/165 (41%), Gaps = 16/165 (9%)

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
            CR       RSL  ++V          P++ L+L     S      SA L   L AC  
Sbjct: 2   TCREVAASLHRSLAKFIV-------PDNPEKILSLVAAKASHHRALGSADLTCALQACRG 54

Query: 152 LGALDYGNW-----VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
            G      W     +++    + +  D ++   LID+YAK G +  A QVF     +D  
Sbjct: 55  RG----NRWPLVLEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHV 110

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS 251
           ++ + + G A  G   EAF L+  M    + P      +VLSAC+
Sbjct: 111 SWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACT 155


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 202/557 (36%), Positives = 315/557 (56%), Gaps = 49/557 (8%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++ N    D F+   LI  YS  G V  AR VFD++    +  WN++       G   E 
Sbjct: 103 ILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEV 162

Query: 62  LKLFDKMPQ------------------RNDVSWNSILGG--------------------- 82
           L L+ KM +                   ++ + N ++ G                     
Sbjct: 163 LGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTT 222

Query: 83  ----LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM--QSLDLE 136
                 RFG VD A  VF  MP R++VSW  +I+ +A+NG+  EAL  FREM  ++ D  
Sbjct: 223 LVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSS 282

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSIL--CAALIDMYAKCGSIDLAM 194
           PNS  +VS+L ACA L AL+ G  ++ YI ++   LDSIL   +AL+ MY +CG +++  
Sbjct: 283 PNSVTMVSVLQACASLAALEQGKLIHGYILRR--GLDSILPVISALVTMYGRCGKLEVGQ 340

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
           +VF    D+DV ++ S I    ++G+  +A ++FE M + G SP  +++++VL ACSH G
Sbjct: 341 RVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEG 400

Query: 255 WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTL 314
            VE+G   F +M+  HGIKP+++HYACMVDLLGRA  L+EA   +  M  +P   +WG+L
Sbjct: 401 LVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSL 460

Query: 315 LGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIK 374
           LG+CR+H N E+ +R    L   +  + G Y+LL++IY E    +  + V+K +  R ++
Sbjct: 461 LGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQ 520

Query: 375 RAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEE 434
           + PG   +E+   ++ F++ D  +   ++I+ F  ++ + +K  GY  +T+ V++++E E
Sbjct: 521 KLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETE 580

Query: 435 EKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDR 494
           EKE ++  HSEKLALAFGLI T  G  IRI KN+R+C DCH   K +SK  +++I +RD 
Sbjct: 581 EKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDV 640

Query: 495 KHYHHFEDGSCSCLEYW 511
             +H F++G CSC +YW
Sbjct: 641 NRFHRFKNGVCSCGDYW 657



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 144/317 (45%), Gaps = 12/317 (3%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK----LFDKMPQ 70
           N LIQ     G+++ A  V  +       ++  +I        + + L+    + D    
Sbjct: 50  NQLIQSLCKEGKLKQAIRVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRHILDNGSD 109

Query: 71  RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM 130
           ++      ++G     GSVD A +VF++  KR++  W  L       G  +E L L+ +M
Sbjct: 110 QDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKM 169

Query: 131 QSLDLEPNSAILVSLLSACA----QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAK 186
             + +E +      +L AC      +  L  G  +++++ ++       +   L+DMYA+
Sbjct: 170 NRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYAR 229

Query: 187 CGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM--KSKGISPDSISYI 244
            G +D A  VF     ++V ++++ I   A NG + EA   F  M  ++K  SP+S++ +
Sbjct: 230 FGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMV 289

Query: 245 AVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPM 304
           +VL AC+ L  +E+G    H      G+   L   + +V + GR G LE  +     M  
Sbjct: 290 SVLQACASLAALEQG-KLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHD 348

Query: 305 KPDNVIWGTLLGACRVH 321
           + D V W +L+ +  VH
Sbjct: 349 R-DVVSWNSLISSYGVH 364


>gi|356555295|ref|XP_003545969.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Glycine max]
          Length = 626

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/550 (36%), Positives = 307/550 (55%), Gaps = 40/550 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K+    D F+ + L+  Y   G   DA+ +FDE    D +SWNS+++G+ R G++   
Sbjct: 77  VIKSLDYRDGFIGDQLVSCYLNMGSTPDAQKLFDEMPHKDSISWNSLVSGFSRIGDLGNC 136

Query: 62  LKLFDKMPQRNDVSWN-----SILGGLV-------------------------------- 84
           L++F  M       WN     S++                                    
Sbjct: 137 LRVFYTMRYEMAFEWNELTLLSVISACAFAKARDEGWCLHCCAVKLGMELEVKVVNAFIN 196

Query: 85  ---RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              +FG VD A ++F  +P++++VSW  +++ + QNG P EA+  F  M+   L P+ A 
Sbjct: 197 MYGKFGCVDSAFKLFWALPEQNMVSWNSMLAVWTQNGIPNEAVNYFNMMRVNGLFPDEAT 256

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           ++SLL AC +L        ++  I    +  +  +   L+++Y+K G ++++ +VF    
Sbjct: 257 ILSLLQACEKLPLGRLVEAIHGVIFTCGLNENITIATTLLNLYSKLGRLNVSHKVFAEIS 316

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
             D  A T+ + G AM+GH  EA E F+    +G+ PD +++  +LSACSH G V  G Y
Sbjct: 317 KPDKVALTAMLAGYAMHGHGKEAIEFFKWTVREGMKPDHVTFTHLLSACSHSGLVMDGKY 376

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           YF  M D + ++P+LDHY+CMVDLLGR G+L +A   I SMP++P++ +WG LLGACRV+
Sbjct: 377 YFQIMSDFYRVQPQLDHYSCMVDLLGRCGMLNDAYRLIKSMPLEPNSGVWGALLGACRVY 436

Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
           RN  +G+     LI  + +    YI+LSNIY       +A +VR  M+ +   R  GCS 
Sbjct: 437 RNINLGKEAAENLIALNPSDPRNYIMLSNIYSAAGLWSDASKVRALMKTKVFIRNAGCSF 496

Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIG 441
           IE    +H F+  D SH  + +I++  EEI++KIK  G+  ET S++ D++EE K  +I 
Sbjct: 497 IEHGNKIHRFVVDDYSHPDSDKIHRKLEEIMRKIKEVGFVSETESILHDVDEEVKTDMIN 556

Query: 442 YHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
            HSEK+ALAFGL+ +     + I+KN+RIC DCH+  K VS + KR I IRD K +HHF 
Sbjct: 557 KHSEKIALAFGLLVSNADMPLVIIKNLRICLDCHNTAKFVSLIEKRTIIIRDSKRFHHFS 616

Query: 502 DGSCSCLEYW 511
           DG CSC +YW
Sbjct: 617 DGLCSCADYW 626



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 129/298 (43%), Gaps = 33/298 (11%)

Query: 24  CGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGL 83
           C RV  AR V    D  D    + +++ Y+  G   +  KLFD+MP ++ +SWNS++ G 
Sbjct: 69  CCRVIHAR-VIKSLDYRDGFIGDQLVSCYLNMGSTPDAQKLFDEMPHKDSISWNSLVSGF 127

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
            R G + +  RVF  M       W                              N   L+
Sbjct: 128 SRIGDLGNCLRVFYTMRYEMAFEW------------------------------NELTLL 157

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           S++SACA   A D G  ++    K  ++L+  +  A I+MY K G +D A ++F +  ++
Sbjct: 158 SVISACAFAKARDEGWCLHCCAVKLGMELEVKVVNAFINMYGKFGCVDSAFKLFWALPEQ 217

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           ++ ++ S +     NG   EA   F  M+  G+ PD  + +++L AC  L  + +     
Sbjct: 218 NMVSWNSMLAVWTQNGIPNEAVNYFNMMRVNGLFPDEATILSLLQACEKLP-LGRLVEAI 276

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           H +    G+   +     +++L  + G L  +    A +  KPD V    +L    +H
Sbjct: 277 HGVIFTCGLNENITIATTLLNLYSKLGRLNVSHKVFAEIS-KPDKVALTAMLAGYAMH 333


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/469 (39%), Positives = 282/469 (60%), Gaps = 3/469 (0%)

Query: 46  NSMINGYVRNGEILEGLKLFDK--MPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRS 103
           N++I+ Y ++G +    ++ DK  +   N +S+ ++L G V+ G    A  VF+ M  R 
Sbjct: 335 NALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRD 394

Query: 104 LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYS 163
           +++W  +I G+ QNG+  EA+ LFR M     EPNS  L ++LSACA L  L YG  ++ 
Sbjct: 395 VIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQIHC 454

Query: 164 YIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG-DKDVSAYTSAIFGLAMNGHSI 222
              +   +    +  A+I +YA+ GS+ LA +VF      K+   +TS I  LA +G   
Sbjct: 455 RAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHGLGE 514

Query: 223 EAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACM 282
           +A  LFE M   G+ PD ++YI V SAC+H G+++KG  Y+  M + HGI PE+ HYACM
Sbjct: 515 QAIVLFEEMLRVGVKPDRVTYIGVFSACTHAGFIDKGKRYYEQMLNEHGIVPEMSHYACM 574

Query: 283 VDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD 342
           VDLL RAGLL EA  FI  MP+ PD V+WG+LL ACRV +NA++ +     L+  D ++ 
Sbjct: 575 VDLLARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAEKLLSIDPDNS 634

Query: 343 GRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQ 402
           G Y  L+N+Y    +  +A  + K  + + +K+  G S   +   VH F A D  H +  
Sbjct: 635 GAYSALANVYSACGRWNDAARIWKLRKDKAVKKETGFSWTHVQSKVHVFGADDVLHPQRD 694

Query: 403 EIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVI 462
            I +   E+ ++IK  G+  +  SV+ D+++E KE ++  HSEKLA+AFGLI T   + +
Sbjct: 695 AICKKAAEMWEEIKKAGFVPDLNSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTL 754

Query: 463 RIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           RI+KN+R+C+DCH+A+K +SKV  R+I +RD   +HHF DG CSC +YW
Sbjct: 755 RIMKNLRVCNDCHTAIKFISKVVDREIIVRDATRFHHFRDGYCSCKDYW 803



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 150/354 (42%), Gaps = 66/354 (18%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K   +  V V NS++  Y  CG    AR VF+        SWN+M++ Y   G +   
Sbjct: 189 VIKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMKVRSESSWNAMVSLYTHQGRMDLA 248

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
           L +F+ M +R+ VSWN+I                               I+G+ QNG   
Sbjct: 249 LSMFENMEERSIVSWNAI-------------------------------IAGYNQNGLDD 277

Query: 122 EALALF-REMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
            AL  F R + +  +EP+   + S+LSACA L  L  G  ++SYI +  +   S +  AL
Sbjct: 278 MALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNAL 337

Query: 181 IDMYAKCGSIDL---------------------------------AMQVFHSYGDKDVSA 207
           I  YAK GS++                                  A +VF    ++DV A
Sbjct: 338 ISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIA 397

Query: 208 YTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMF 267
           +T+ I G   NG + EA ELF +M   G  P+S +  AVLSAC+ L ++  G    H   
Sbjct: 398 WTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYG-KQIHCRA 456

Query: 268 DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
                +  +     ++ +  R+G +  A      +  + + V W +++ A   H
Sbjct: 457 IRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQH 510



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 155/337 (45%), Gaps = 14/337 (4%)

Query: 46  NSMINGYVRNGE----ILEGLKLFDKMP--QRNDVSWNSILGGLVRFGSVDDACRVFNQM 99
           N++++ Y R G       E  +LFD +P  +RN  +WNS+L    + G + DA  VF QM
Sbjct: 64  NNLLSYYARAGVGRGCFHEARRLFDDIPYARRNAFTWNSLLSMYAKSGRLADARVVFAQM 123

Query: 100 PKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGN 159
           P+R  VSW V++ G  + GR  +A+  F +M    L P+  +L ++LS+CA   A   G 
Sbjct: 124 PERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGLAPSQFMLTNVLSSCAATEARGIGR 183

Query: 160 WVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNG 219
            V+S++ K  +     +  +++ MY KCG  + A  VF     +  S++ + +      G
Sbjct: 184 KVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMKVRSESSWNAMVSLYTHQG 243

Query: 220 HSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHY 279
               A  +FENM+ + I    +S+ A+++  +  G  +    +F  M     ++P+    
Sbjct: 244 RMDLALSMFENMEERSI----VSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFTV 299

Query: 280 ACMVDLLGRAGLL---EEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIE 336
             ++       +L   ++  ++I    M   + I   L+       + E  +RI +  + 
Sbjct: 300 TSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSGSVETARRIMDKAVV 359

Query: 337 SDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKI 373
           +D N      LL   YV+    + A EV   M  R +
Sbjct: 360 ADLNVISFTALLEG-YVKLGDTKQAREVFDVMNNRDV 395



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 113/262 (43%), Gaps = 44/262 (16%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDE-SDDLDVVSWNSMINGYVRNGEILEGLKLFDKM- 68
           V V N++I  Y+  G V  AR VFD+     + V+W SMI    ++G   + + LF++M 
Sbjct: 465 VSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHGLGEQAIVLFEEML 524

Query: 69  -----PQRNDVSWNSILGGLVRFGSVDDACRVFNQM-------PKRSLVSWVVLISGFAQ 116
                P R  V++  +       G +D   R + QM       P+ S   +  ++   A+
Sbjct: 525 RVGVKPDR--VTYIGVFSACTHAGFIDKGKRYYEQMLNEHGIVPEMS--HYACMVDLLAR 580

Query: 117 NGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD--- 173
            G   EA      +Q + + P++ +  SLL+AC      D          +K + +D   
Sbjct: 581 AGLLTEAHEF---IQRMPVAPDTVVWGSLLAACRVRKNADLAE----LAAEKLLSIDPDN 633

Query: 174 SILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS----------AIFG----LAMNG 219
           S   +AL ++Y+ CG  + A +++    DK V   T            +FG    L    
Sbjct: 634 SGAYSALANVYSACGRWNDAARIWKLRKDKAVKKETGFSWTHVQSKVHVFGADDVLHPQR 693

Query: 220 HSI--EAFELFENMKSKGISPD 239
            +I  +A E++E +K  G  PD
Sbjct: 694 DAICKKAAEMWEEIKKAGFVPD 715


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 215/551 (39%), Positives = 311/551 (56%), Gaps = 44/551 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNG----- 56
           V+K  F  +V V NSLIQ +S  G   +A  VF + +  D+VSW +MI+GY +NG     
Sbjct: 322 VIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKA 381

Query: 57  ----EILE-------------------GLKLFDK------MPQRNDVS-----WNSILGG 82
                I+E                   GL L DK         R  ++      NS++  
Sbjct: 382 VETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDM 441

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             +   +D A  VF+++P ++++SW  +I G   N R  EAL  F++M  L L+PNS  L
Sbjct: 442 YSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQM-ILSLKPNSVTL 500

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           VS+LSACA++GAL  G  ++++  +  +  D  L  AL+DMY +CG ++ A   F+S  +
Sbjct: 501 VSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSC-E 559

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           KDV+++   + G A  G    A ELF  M    ++PD I++ ++L ACS  G V  G  Y
Sbjct: 560 KDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEY 619

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F SM     I P L HYA +VDLLGRAG LE+A  FI  MP+ PD  IWG LL ACR+++
Sbjct: 620 FESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQ 679

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           N E+G+     + E D    G YILL N+Y ++ K +    VRK MR+ ++   PGCS +
Sbjct: 680 NVELGELAAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMRENRLTVDPGCSWV 739

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E+ G VH FL GD  H + +EI    E   +K++  G ++   S   DI+  + E   G 
Sbjct: 740 EVAGQVHAFLTGDDFHPQIKEINAVLEGFYEKMEATGLSMSKDSRRDDIDASKAEIFCG- 798

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSE+LA+AFGLI T PG+ I + KN+ +C +CH+ +K +SKV +R IS+RD + +HHF+D
Sbjct: 799 HSERLAIAFGLINTVPGTPIWVTKNLYMCENCHNTVKFISKVVRRGISVRDTEQFHHFKD 858

Query: 503 GSCSCLE--YW 511
           G CSC +  YW
Sbjct: 859 GVCSCGDEGYW 869



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 124/381 (32%), Positives = 188/381 (49%), Gaps = 45/381 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V++  F  DV V N+LI  Y  CG +  AR VFD     D +SWN+MI+GY  N   LEG
Sbjct: 221 VIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEG 280

Query: 62  LKLF----------DKMPQRNDVSWNSILG---------------GLV------------ 84
           L+LF          D M   + +S    LG               G V            
Sbjct: 281 LRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQM 340

Query: 85  --RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
               G  D+A  VF++M  + LVSW  +ISG+ +NG P++A+  +  M+   + P+   +
Sbjct: 341 HSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITI 400

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S+LSACA LG LD G  ++ +  +  +    I+  +LIDMY+KC  ID A++VFH   +
Sbjct: 401 ASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPN 460

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF-Y 261
           K+V ++TS I GL +N  S EA   F+ M    + P+S++ ++VLSAC+ +G +  G   
Sbjct: 461 KNVISWTSIILGLRLNYRSFEALFFFQQM-ILSLKPNSVTLVSVLSACARIGALSCGKEI 519

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           + H++    G    L +   ++D+  R G +E A N   S   + D   W  LL      
Sbjct: 520 HAHALRTGLGFDGFLPN--ALLDMYVRCGRMEPAWNQFNS--CEKDVASWNILLTGYAQQ 575

Query: 322 RNAEMGQRIGNMLIESDQNHD 342
               +   + + +IESD N D
Sbjct: 576 GKGGLAVELFHKMIESDVNPD 596



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 100/360 (27%), Positives = 170/360 (47%), Gaps = 43/360 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V K      V + N+L+  +   G + +A +VF +  + D+ SWN ++ GY + G   E 
Sbjct: 120 VSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEA 179

Query: 62  LKLFDKM---PQRNDV-SWNSIL---GGL------------------------------- 83
           L L+ +M     R DV ++  +L   GGL                               
Sbjct: 180 LNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITM 239

Query: 84  -VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
            V+ G +  A  VF++MP+R  +SW  +ISG+ +N    E L LF  M+   ++P+   +
Sbjct: 240 YVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTM 299

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S++SAC  LG    G  V+ Y+ K     +  +  +LI M++  G  D A  VF     
Sbjct: 300 TSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEF 359

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           KD+ ++T+ I G   NG   +A E +  M+ +G+ PD I+  +VLSAC+ LG ++KG   
Sbjct: 360 KDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGI-M 418

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVI-WGTLLGACRVH 321
            H   D  G+   +     ++D+  +   +++A      +P K  NVI W +++   R++
Sbjct: 419 LHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNK--NVISWTSIILGLRLN 476


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/537 (36%), Positives = 311/537 (57%), Gaps = 40/537 (7%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           K+     V +  +L+  Y+ CG +  AR VFD     + V+W+++I G+V    + +   
Sbjct: 151 KSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFL 210

Query: 64  LFDKMPQR----------------------------------------NDVSWNSILGGL 83
           LF  M  +                                        +  + NS+L   
Sbjct: 211 LFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMY 270

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
            + G +D A  +F++M  +  VS+  L+SG+ QNGR +EA  +F++MQ+ ++EP++A +V
Sbjct: 271 AKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMV 330

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           SL+ AC+ L AL +G   +  +  + +  ++ +C ALIDMYAKCG IDL+ QVF+    +
Sbjct: 331 SLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSR 390

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           D+ ++ + I G  ++G   EA  LF  M + G  PD +++I +LSACSH G V +G ++F
Sbjct: 391 DIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWF 450

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
           H M   +G+ P ++HY CMVDLL R G L+EA  FI SMP++ D  +W  LLGACRV++N
Sbjct: 451 HVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKN 510

Query: 324 AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE 383
            ++G+++  M+ E      G ++LLSNIY    + + A EVR   + +  K++PGCS IE
Sbjct: 511 IDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIE 570

Query: 384 LDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYH 443
           ++G +H F+ GD+SH ++ EIY+  + I+  IK  GY  +T  V+ D+EEEEKE  +  H
Sbjct: 571 INGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICH 630

Query: 444 SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF 500
           SEKLA+A+G++       I + KN+R+C DCH+ +K +S V +R I +RD   +HHF
Sbjct: 631 SEKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHF 687



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/366 (26%), Positives = 162/366 (44%), Gaps = 58/366 (15%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNG------------- 56
           D+FV  +L+  Y  C  + DA  +F      D+V+WN+M+ GY  +G             
Sbjct: 44  DLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQ 103

Query: 57  -----------EILEGLKLFDKM-------------------PQRNDVS--------WNS 78
                       ++  L L  +                    P RN  S          +
Sbjct: 104 MQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTA 163

Query: 79  ILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD---L 135
           +L    + GS+  A RVF+ MP R+ V+W  LI GF    R  +A  LF+ M +     L
Sbjct: 164 LLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFL 223

Query: 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ 195
            P S  + S L ACA L  L  G  +++ + K  +  D     +L+ MYAK G ID A+ 
Sbjct: 224 SPTS--IASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIA 281

Query: 196 VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGW 255
           +F     KD  +Y++ + G   NG + EAF +F+ M++  + PD+ + ++++ ACSHL  
Sbjct: 282 LFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAA 341

Query: 256 VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
           ++ G    H    + G+  E      ++D+  + G ++ +      MP + D V W T++
Sbjct: 342 LQHG-RCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSR-DIVSWNTMI 399

Query: 316 GACRVH 321
               +H
Sbjct: 400 AGYGIH 405



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 111/241 (46%), Gaps = 44/241 (18%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++ K+    D+   NSL+  Y+  G +  A  +FDE    D VS++++++GYV+NG   E
Sbjct: 250 LLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEE 309

Query: 61  GLKLFDKMPQ-----------------------------------RNDVSWNSILGGLV- 84
              +F KM                                     R   S  SI   L+ 
Sbjct: 310 AFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALID 369

Query: 85  ---RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G +D + +VFN MP R +VSW  +I+G+  +G  KEA ALF EM +L   P+   
Sbjct: 370 MYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVT 429

Query: 142 LVSLLSACAQLGALDYG-NW--VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH 198
            + LLSAC+  G +  G +W  V  +      +++  +C  ++D+ ++ G +D A +   
Sbjct: 430 FICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYIC--MVDLLSRGGFLDEAYEFIQ 487

Query: 199 S 199
           S
Sbjct: 488 S 488



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 83/177 (46%), Gaps = 16/177 (9%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+    A +  + N+LI  Y+ CGR+  +R VF+     D+VSWN+MI GY  +G   E 
Sbjct: 352 VIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEA 411

Query: 62  LKLFDKMPQ----RNDVSWNSILGGLVRFGSVDDACRVFNQM-------PKRSLVSWVVL 110
             LF +M       + V++  +L      G V +    F+ M       P+  +  ++ +
Sbjct: 412 TALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPR--MEHYICM 469

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK 167
           +   ++ G   EA   +  +QS+ L  +  + V+LL AC     +D G  V   IQ+
Sbjct: 470 VDLLSRGGFLDEA---YEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQE 523



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 85/194 (43%), Gaps = 14/194 (7%)

Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
           + PN+      L AC+ L     G  ++ +     ++ D  +  AL+DMY KC  +  A 
Sbjct: 6   VAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAA 65

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNG--HSIEAFELFENMKSKGISPDSISYIAVLSACSH 252
            +F +   +D+ A+ + + G A +G  H   A  L   M+   + P++ + +A+L   + 
Sbjct: 66  HIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQ 125

Query: 253 LGWVEKGFYYFHSMFDVHGIKPELDHYACMVD--LLGRA--------GLLEEAENFIASM 302
            G + +G    H+      + P  +  + + D  LLG A        G L  A     +M
Sbjct: 126 QGALAQG-TSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAM 184

Query: 303 PMKPDNVIWGTLLG 316
           P + + V W  L+G
Sbjct: 185 PAR-NEVTWSALIG 197


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 209/601 (34%), Positives = 310/601 (51%), Gaps = 92/601 (15%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFD--------------------------- 35
           ++N    D FV N+LI  Y+ CG ++DA  VF+                           
Sbjct: 286 IRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAF 345

Query: 36  --------ESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM----PQRNDVSWNSILGGL 83
                   E+  LDV++W+++I GY + G   E L  F +M     + N V+  S+L   
Sbjct: 346 ELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSAC 405

Query: 84  VRFGSVDDA----------------------------------------CR-------VF 96
              G++                                           CR       +F
Sbjct: 406 ASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIF 465

Query: 97  NQMPKR--SLVSWVVLISGFAQNGRPKEALALFREM--QSLDLEPNSAILVSLLSACAQL 152
           N +P+R  ++V+W V+I G+AQ G   +AL LF EM  +   + PN+  +  +L ACA L
Sbjct: 466 NSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHL 525

Query: 153 GALDYGNWVYSYIQKKCIKLDSILCAA--LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
            +L  G  +++Y+ +      S+   A  LIDMY+KCG +D A  VF S   ++  ++TS
Sbjct: 526 SSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTS 585

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            + G  M+G   EA ++F+ M+  G  PD IS++ +L ACSH G V++G  YF  M   +
Sbjct: 586 MMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLDYFDIMRSDY 645

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
           G+     HYAC++DLL R+G L++A   I  MPM+P   IW  LL ACRVH N E+ +  
Sbjct: 646 GVIASAQHYACVIDLLARSGRLDKAWKTIQEMPMEPSAAIWVALLSACRVHSNVELAEYA 705

Query: 331 GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHE 390
            N L+     +DG Y L+SNIY    + ++   +R+ M+K  IK+ PGCS ++       
Sbjct: 706 LNKLVSMKAENDGSYTLISNIYATARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTAS 765

Query: 391 FLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALA 450
           F  GDRSH  + EIY   E ++ +IK  GY  ET   + D+++EEK  ++  HSEKLALA
Sbjct: 766 FFVGDRSHPLSPEIYSLLERLIGRIKVMGYVPETNFALHDVDDEEKNNLLTEHSEKLALA 825

Query: 451 FGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEY 510
           +GL+ T PG  IRI KN+R+C DCHSA   +SK+   +I +RD   +HHF++GSCSC  Y
Sbjct: 826 YGLLTTSPGCPIRITKNLRVCGDCHSAFIYISKIVDHEIIVRDSSRFHHFKNGSCSCGGY 885

Query: 511 W 511
           W
Sbjct: 886 W 886



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 117/421 (27%), Positives = 185/421 (43%), Gaps = 101/421 (23%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDL---DVVSWNSMINGYVRNGE 57
           ++  N F  +VFV N+L+  YS  G + DA  VFDE       DV+SWNS++  +V+   
Sbjct: 174 LICCNGFESNVFVCNALVAMYSRSGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSN 233

Query: 58  ILEGLKLFDKM-------------------------------PQRNDVS----------- 75
               L LF +M                               PQ  ++            
Sbjct: 234 PRTALDLFSEMTTIVHEKATNERSDIISIVNILPACASLKALPQTKEIHSYAIRNGTFAD 293

Query: 76  ---WNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM-- 130
               N+++    + GS+ DA  VFN M  + +VSW  +++G+ Q+G+   A  LF+ M  
Sbjct: 294 AFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRK 353

Query: 131 ------------------------QSLDL---------EPNSAILVSLLSACAQLGALDY 157
                                   ++LD          EPNS  ++SLLSACA LGAL  
Sbjct: 354 ENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQ 413

Query: 158 GNWVYSYIQKKCI------------KLDSILCAALIDMYAKCGSIDLAMQVFHSYG--DK 203
           G   ++Y  KKC+              D ++  ALIDMY+KC S   A  +F+S    ++
Sbjct: 414 GMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRER 473

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSK--GISPDSISYIAVLSACSHLGWVEKGFY 261
           +V  +T  I G A  G S +A +LF  M SK   ++P++ +   +L AC+HL  +  G  
Sbjct: 474 NVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQ 533

Query: 262 YFHSMFDVHGIKPELDHYA-CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
               +   H  +  +   A C++D+  + G ++ A N   SMP K + V W +++    +
Sbjct: 534 IHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMP-KRNEVSWTSMMSGYGM 592

Query: 321 H 321
           H
Sbjct: 593 H 593



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 123/230 (53%), Gaps = 11/230 (4%)

Query: 54  RNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSL---VSWVVL 110
           R+G    GL   +   + N    N+++    R GS++DA  VF+++ ++ +   +SW  +
Sbjct: 166 RSGSAFHGLICCNGF-ESNVFVCNALVAMYSRSGSLEDASLVFDEITRKGIDDVISWNSI 224

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNS------AILVSLLSACAQLGALDYGNWVYSY 164
           ++   +   P+ AL LF EM ++  E  +        +V++L ACA L AL     ++SY
Sbjct: 225 VAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACASLKALPQTKEIHSY 284

Query: 165 IQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEA 224
             +     D+ +C ALID YAKCGS+  A+ VF+    KDV ++ + + G   +G    A
Sbjct: 285 AIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAA 344

Query: 225 FELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP 274
           FELF+NM+ + I  D I++ AV++  +  G+ ++    F  M  ++G +P
Sbjct: 345 FELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMI-LYGSEP 393



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 112/266 (42%), Gaps = 19/266 (7%)

Query: 65  FDKMPQRNDVSWNSILGGLVR----FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
              +P  + VS  S+  G+V      G+  DA  V  ++     V W +L+    + GR 
Sbjct: 71  LPPLPSHSYVSPKSLGTGVVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRL 130

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
             A+ +   M     +P+   L   L AC +L +   G+  +  I     + +  +C AL
Sbjct: 131 DRAIGVSCRMLRAGTKPDHFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNAL 190

Query: 181 IDMYAKCGSIDLAMQVFHSY---GDKDVSAYTSAIFGLAMNGHSIEAFELFENM------ 231
           + MY++ GS++ A  VF      G  DV ++ S +       +   A +LF  M      
Sbjct: 191 VAMYSRSGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHE 250

Query: 232 KSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYAC--MVDLLGRA 289
           K+     D IS + +L AC+ L  + +     HS    +G     D + C  ++D   + 
Sbjct: 251 KATNERSDIISIVNILPACASLKALPQT-KEIHSYAIRNGTFA--DAFVCNALIDTYAKC 307

Query: 290 GLLEEAENFIASMPMKPDNVIWGTLL 315
           G +++A N    M  K D V W  ++
Sbjct: 308 GSMKDAVNVFNVMEFK-DVVSWNAMV 332


>gi|297735590|emb|CBI18084.3| unnamed protein product [Vitis vinifera]
          Length = 496

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/447 (41%), Positives = 280/447 (62%), Gaps = 12/447 (2%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136
           N IL     F   +    +F+Q+ + ++  W  +I G   N    +A+  +  M+S    
Sbjct: 50  NMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFL 109

Query: 137 PNSAILVSLLSACAQLGALDYG---------NWVYSYIQKKCIKLDSILCAALIDMYAKC 187
           PN+     +L ACA+L  L  G          W++  I +  +  +  +  +L+DMYAKC
Sbjct: 110 PNNFTFPFVLKACARLLDLQLGVKIHTLVVKEWIHKCIMEMGMVRNVFVGTSLVDMYAKC 169

Query: 188 GSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK---GISPDSISYI 244
           G+++ A  VF    +KD+ ++ + I G A+NG   EA +LF  M+ +   GI PD  ++I
Sbjct: 170 GNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENKLGIKPDGNTFI 229

Query: 245 AVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPM 304
            +L  C+H G V++G  YF+SM+    + P ++HY CMVDLLGRAGLL+EA   I +MPM
Sbjct: 230 GLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPM 289

Query: 305 KPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEV 364
           + + ++WG LLGACR+HR+ ++ +     LIE +  + G Y+LLSNIY   LK + A +V
Sbjct: 290 EANAIVWGALLGACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYSANLKWDEAAKV 349

Query: 365 RKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVET 424
           R +M +++I++ PGCS IE+DG+VHEFL GD+ H  +++IY   +E+ KK+K  GY   T
Sbjct: 350 RLSMNEKRIQKPPGCSWIEVDGIVHEFLVGDKYHPLSEKIYAKLDELTKKMKVAGYVPTT 409

Query: 425 RSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKV 484
             V+FDIEEEEKE  +G HSEKLA+AFGLI   P +VIR+VKN+R+C DCH A+KL+S +
Sbjct: 410 DFVLFDIEEEEKEHFLGCHSEKLAIAFGLISATPTAVIRVVKNLRVCGDCHMAIKLISSI 469

Query: 485 FKRKISIRDRKHYHHFEDGSCSCLEYW 511
             R+I++RD   +H F +GSCSC +YW
Sbjct: 470 TGREITVRDNNRFHCFREGSCSCNDYW 496



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 78/160 (48%), Gaps = 15/160 (9%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++     +VFV  SL+  Y+ CG +  AR VFD   + D+VSW +MI GY  NG   E 
Sbjct: 147 IMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEA 206

Query: 62  LKLFDKMPQRNDV-------SWNSILGGLVRFGSVDDACRVFNQMPK-----RSLVSWVV 109
           + LF +M + N +       ++  +L G    G VD+  R FN M +      S+  +  
Sbjct: 207 IDLFLQMQRENKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGC 266

Query: 110 LISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
           ++    + G   EA  L R M    +E N+ +  +LL AC
Sbjct: 267 MVDLLGRAGLLDEAHQLIRNMP---MEANAIVWGALLGAC 303


>gi|414866530|tpg|DAA45087.1| TPA: hypothetical protein ZEAMMB73_840863 [Zea mays]
          Length = 851

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/496 (39%), Positives = 296/496 (59%), Gaps = 32/496 (6%)

Query: 8   AYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDK 67
           A DV    +++  Y   GRV +AR +FDE    +VVSW +M++GY +NG++    KLF+ 
Sbjct: 171 AKDVVAWTAMLSGYCQVGRVDEARTLFDEMPKRNVVSWTAMVSGYAQNGQVNLARKLFEV 230

Query: 68  MPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV---------------------- 105
           MP+RN+VSW ++L G ++ G ++DA  +FN MP   L                       
Sbjct: 231 MPERNEVSWTAMLFGYIQAGRIEDAEELFNAMPDHPLAACNGMIVGFGQQGMVDAAKSVF 290

Query: 106 ---------SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALD 156
                    +W  +I  + QN    EAL+ FREM  + + PN   ++S+L+ CA L  LD
Sbjct: 291 DRMCERDDGTWSAIIKAYEQNEFLMEALSTFREMLHIGIRPNYPSVISILTVCAALAVLD 350

Query: 157 YGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLA 216
           YG  V+  + ++   +D    +ALI MY KCG++D A +VFH +  KDV  + S I G A
Sbjct: 351 YGREVHGAMLRRSFDMDIYAVSALITMYIKCGNLDKAKRVFHMFEPKDVVMWNSMITGYA 410

Query: 217 MNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPEL 276
            +G   EA  +F++M+  G+ PD I+YI  L+ACS+ G V++G   F+SM    GIKP L
Sbjct: 411 QHGLGEEALHIFDDMRLAGMVPDGITYIGALTACSYTGKVKEGRDIFNSMRTKSGIKPGL 470

Query: 277 DHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIE 336
           +HYACMVDLLGRAGL++EA   I +MP++PD VIWG L+GACR+H+NAE+ +     L+E
Sbjct: 471 EHYACMVDLLGRAGLVDEALYLIKTMPVEPDAVIWGALMGACRMHKNAEIAEISAKKLLE 530

Query: 337 SDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGD- 395
            +  + G Y+LLS+IY  + + E+A  +RK +  R + ++ GCS IE D  VH F +GD 
Sbjct: 531 LEPGNAGPYVLLSHIYTSSGRWEDASNMRKFISSRHLNKSLGCSWIEYDKRVHLFKSGDV 590

Query: 396 RSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLIC 455
            +H++   I +  E++   +   GY+ +   V+ DI++E+K   + YHSE+ A+A+GL+ 
Sbjct: 591 LAHQEHASILKMLEKLDGLLMESGYSADGSFVLHDIDDEQKTHSLRYHSERQAVAYGLLK 650

Query: 456 TKPGSVIRIVKNIRIC 471
                 IR++KN+R+C
Sbjct: 651 IPEELPIRVMKNLRVC 666



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 156/313 (49%), Gaps = 22/313 (7%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDV 74
            SL++ Y   G + DA  +F +  + + +S+  ++ G++  G + E  KLFD+MP ++ V
Sbjct: 116 TSLLRGYVRHGLLADAIQLFRQMPERNHISYTVLLGGFLDAGRVDEARKLFDEMPAKDVV 175

Query: 75  SWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD 134
           +W ++L G  + G VD+A  +F++MPKR++VSW  ++SG+AQNG+   A  LF  M    
Sbjct: 176 AWTAMLSGYCQVGRVDEARTLFDEMPKRNVVSWTAMVSGYAQNGQVNLARKLFEVMP--- 232

Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
            E N     ++L    Q G ++    +++ +    +      C  +I  + + G +D A 
Sbjct: 233 -ERNEVSWTAMLFGYIQAGRIEDAEELFNAMPDHPLA----ACNGMIVGFGQQGMVDAAK 287

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
            VF    ++D   +++ I     N   +EA   F  M   GI P+  S I++L+ C+ L 
Sbjct: 288 SVFDRMCERDDGTWSAIIKAYEQNEFLMEALSTFREMLHIGIRPNYPSVISILTVCAALA 347

Query: 255 WVEKGFYYFHSMFDVHGI----KPELDHYA--CMVDLLGRAGLLEEAENFIASMPMKPDN 308
            ++ G        +VHG       ++D YA   ++ +  + G L++A+        K D 
Sbjct: 348 VLDYG-------REVHGAMLRRSFDMDIYAVSALITMYIKCGNLDKAKRVFHMFEPK-DV 399

Query: 309 VIWGTLLGACRVH 321
           V+W +++     H
Sbjct: 400 VMWNSMITGYAQH 412



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 120/256 (46%), Gaps = 41/256 (16%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDV 74
           N+ I   +  G +  AR  F+        S+N+++ GY RN      L++F +MP R+  
Sbjct: 21  NARIARLARTGNMEGARATFEAMPLRTTASYNALLAGYFRNHLPDAALRVFHRMPTRDLA 80

Query: 75  SWNSILGGL---------------------------------VRFGSVDDACRVFNQMPK 101
           S+N+++ GL                                 VR G + DA ++F QMP+
Sbjct: 81  SYNALISGLSLRRHTLPDAAAALATIPYPPSVVSFTSLLRGYVRHGLLADAIQLFRQMPE 140

Query: 102 RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161
           R+ +S+ VL+ GF   GR  EA  LF EM + D+        ++LS   Q+G +D    +
Sbjct: 141 RNHISYTVLLGGFLDAGRVDEARKLFDEMPAKDV----VAWTAMLSGYCQVGRVDEARTL 196

Query: 162 YSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHS 221
           +  + K+ +    +   A++  YA+ G ++LA ++F    +++  ++T+ +FG    G  
Sbjct: 197 FDEMPKRNV----VSWTAMVSGYAQNGQVNLARKLFEVMPERNEVSWTAMLFGYIQAGRI 252

Query: 222 IEAFELFENMKSKGIS 237
            +A ELF  M    ++
Sbjct: 253 EDAEELFNAMPDHPLA 268



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 124/279 (44%), Gaps = 23/279 (8%)

Query: 42  VVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPK 101
           VV  N+ I    R G +      F+ MP R   S+N++L G  R    D A RVF++MP 
Sbjct: 17  VVDANARIARLARTGNMEGARATFEAMPLRTTASYNALLAGYFRNHLPDAALRVFHRMPT 76

Query: 102 RSLVSWVVLISGFA--QNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGN 159
           R L S+  LISG +  ++  P  A AL     ++   P+     SLL    + G L    
Sbjct: 77  RDLASYNALISGLSLRRHTLPDAAAAL----ATIPYPPSVVSFTSLLRGYVRHGLLADAI 132

Query: 160 WVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNG 219
            ++  + ++     ++L    +D     G +D A ++F     KDV A+T+ + G    G
Sbjct: 133 QLFRQMPERNHISYTVLLGGFLD----AGRVDEARKLFDEMPAKDVVAWTAMLSGYCQVG 188

Query: 220 HSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHY 279
              EA  LF+ M  + +    +S+ A++S  +  G V      F  M       PE +  
Sbjct: 189 RVDEARTLFDEMPKRNV----VSWTAMVSGYAQNGQVNLARKLFEVM-------PERNEV 237

Query: 280 ACMVDLLG--RAGLLEEAENFIASMPMKPDNVIWGTLLG 316
           +    L G  +AG +E+AE    +MP  P     G ++G
Sbjct: 238 SWTAMLFGYIQAGRIEDAEELFNAMPDHPLAACNGMIVG 276


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 208/573 (36%), Positives = 310/573 (54%), Gaps = 63/573 (10%)

Query: 2   VVKNS-FAYDVFVKNSLIQFYSVCGRVRDARWVFD--ESDDLDVVSWNSMINGYVRNGEI 58
           V+K+S  A + FV ++L+  Y+   RV  AR VFD        +  WN+M+ GY + G  
Sbjct: 297 VLKDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMD 356

Query: 59  LEGLKLFDKM-------PQRNDVS---------------------------------WNS 78
            E L+LF +M       P    ++                                  N+
Sbjct: 357 EEALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAVHGYVLKRGMADNPFVQNA 416

Query: 79  ILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQS------ 132
           ++    R G ++ A  +F  +  R +VSW  LI+G    G   +A  L REMQ       
Sbjct: 417 LMDLYARLGDMEAARWIFAAIEPRDVVSWNTLITGCVVQGHIHDAFQLVREMQQQGRFTD 476

Query: 133 ---------LDLEP---NSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
                     D EP   N+  L++LL  CA L A   G  ++ Y  +  +  D  + +AL
Sbjct: 477 ATTEDGIAGTDEEPVVPNNVTLMTLLPGCAMLAAPAKGKEIHGYAMRHALDSDIAVGSAL 536

Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM-KSKGISPD 239
           +DMYAKCG + L+  VF     ++V  +   I    M+G   EA  LF+ M  S    P+
Sbjct: 537 VDMYAKCGCLALSRAVFDRLPKRNVITWNVLIMAYGMHGLGDEAIALFDRMVMSNEAKPN 596

Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI 299
            +++IA L+ACSH G V++G   FHSM   HG++P  D +AC VD+LGRAG L+EA + I
Sbjct: 597 EVTFIAALAACSHSGMVDRGMELFHSMKRNHGVQPTPDLHACAVDILGRAGRLDEAYSII 656

Query: 300 ASM-PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKG 358
            SM P +     W + LGACR+HRN  +G+     L + + +    Y+LL NIY      
Sbjct: 657 TSMEPGEQQVSAWSSFLGACRLHRNVPLGEIAAERLFQLEPDEASHYVLLCNIYSAAGLW 716

Query: 359 ENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNY 418
           E + EVR  MR+R + + PGCS IELDGV+H F+AG+ +H ++  ++   + + ++++N 
Sbjct: 717 EKSSEVRNRMRQRGVSKEPGCSWIELDGVIHRFMAGESAHPESTLVHAHMDALWERMRNQ 776

Query: 419 GYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAM 478
           GY  +T SV+ DIEE EK  ++ YHSEKLA+AFGL+ T PG+ IR+ KN+R+C+DCH A 
Sbjct: 777 GYTPDTSSVLHDIEESEKAAILRYHSEKLAIAFGLLRTPPGATIRVAKNLRVCNDCHEAA 836

Query: 479 KLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           K +S++  R+I +RD + +HHF DG+CSC +YW
Sbjct: 837 KFISRMVGREIVLRDVRRFHHFVDGACSCGDYW 869



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/388 (23%), Positives = 170/388 (43%), Gaps = 70/388 (18%)

Query: 2   VVKNSF--AYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLD-----VVSWNSMINGYVR 54
            +KN F    + F  N+L+  Y+  G V DA+ +F   D  D     VV+WN+M++  V+
Sbjct: 189 ALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGGVVTWNTMVSLLVQ 248

Query: 55  NGEILEGLKLFDKMPQR-----------------------------------NDVSWNSI 79
           +G   E +++   M  R                                   +D++ NS 
Sbjct: 249 SGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHAYVLKDSDLAANSF 308

Query: 80  LGGLV--RFGS---VDDACRVFNQMP--KRSLVSWVVLISGFAQNGRPKEALALFREMQS 132
           +   +   + S   V  A RVF+ +P   R L  W  ++ G+AQ G  +EAL LF  M++
Sbjct: 309 VASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDEEALELFARMEA 368

Query: 133 -LDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSID 191
              + P+   +  +L ACA+         V+ Y+ K+ +  +  +  AL+D+YA+ G ++
Sbjct: 369 EAGVVPSETTIAGVLPACARSETFAGKEAVHGYVLKRGMADNPFVQNALMDLYARLGDME 428

Query: 192 LAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG---------------- 235
            A  +F +   +DV ++ + I G  + GH  +AF+L   M+ +G                
Sbjct: 429 AARWIFAAIEPRDVVSWNTLITGCVVQGHIHDAFQLVREMQQQGRFTDATTEDGIAGTDE 488

Query: 236 --ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLE 293
             + P++++ + +L  C+ L    KG    H     H +  ++   + +VD+  + G L 
Sbjct: 489 EPVVPNNVTLMTLLPGCAMLAAPAKG-KEIHGYAMRHALDSDIAVGSALVDMYAKCGCLA 547

Query: 294 EAENFIASMPMKPDNVIWGTLLGACRVH 321
            +      +P K + + W  L+ A  +H
Sbjct: 548 LSRAVFDRLP-KRNVITWNVLIMAYGMH 574



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 154/360 (42%), Gaps = 53/360 (14%)

Query: 13  VKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMING---YVRNGEILEGLK--LFDK 67
           V N+L+  Y+ CG +  A  +F+     D V++NS+I     + R    L+ L+  L + 
Sbjct: 98  VANALLTAYARCGDLTAALALFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEG 157

Query: 68  MPQRN-------------------------------------DVSWNSILGGLVRFGSVD 90
            P  +                                       ++N++L    R G VD
Sbjct: 158 HPLSSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVD 217

Query: 91  DACRVFNQM-----PKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
           DA  +F  +     P   +V+W  ++S   Q+GR  EA+ +  +M +  + P+     S 
Sbjct: 218 DAQMLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASA 277

Query: 146 LSACAQLGALDYGNWVYSYIQKKC-IKLDSILCAALIDMYAKCGSIDLAMQVFH--SYGD 202
           L AC+QL  L  G  +++Y+ K   +  +S + +AL+DMYA    + +A +VF     G 
Sbjct: 278 LPACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGH 337

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSK-GISPDSISYIAVLSACSHLGWVEKGFY 261
           + +  + + + G A  G   EA ELF  M+++ G+ P   +   VL AC+       G  
Sbjct: 338 RQLGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACAR-SETFAGKE 396

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
             H      G+         ++DL  R G +E A    A++  + D V W TL+  C V 
Sbjct: 397 AVHGYVLKRGMADNPFVQNALMDLYARLGDMEAARWIFAAIEPR-DVVSWNTLITGCVVQ 455


>gi|224122234|ref|XP_002318784.1| predicted protein [Populus trichocarpa]
 gi|222859457|gb|EEE97004.1| predicted protein [Populus trichocarpa]
          Length = 511

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/438 (42%), Positives = 281/438 (64%), Gaps = 3/438 (0%)

Query: 74  VSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL 133
           V  N I+  L+R  +   A  VFN+M  R +V+W  +I G+ +  R +EAL LFR M   
Sbjct: 77  VELNLIIDKLMRTENYRVAKMVFNKMRARDVVTWNTMIGGYVRKARFEEALRLFRFMNKS 136

Query: 134 DLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLA 193
           ++EP+     S+++ CA+LGAL +  WV+  + +K I+L+ IL +ALIDMY+KCG I  A
Sbjct: 137 NVEPDKYTFASVINGCAKLGALKHAQWVHELLIEKRIELNFILSSALIDMYSKCGKIQTA 196

Query: 194 MQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL 253
            ++F      +V  + + I GLA++G +++A ++F  M+ + + PD+I+++ +L+ACSH 
Sbjct: 197 KEIFDGVQRNNVCIWNAMISGLAVHGLALDAIKVFTKMEVENVLPDAITFLGILTACSHC 256

Query: 254 GWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGT 313
           G V++G  YF  M   + ++P ++HY  MVDLLGRAGLLEEA   I SMPM+PD VIW  
Sbjct: 257 GLVKEGRKYFDLMRSRYSVQPHIEHYGAMVDLLGRAGLLEEAFAMIKSMPMEPDVVIWRA 316

Query: 314 LLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKI 373
           LLGACR ++  E+G+     +    +   G Y+LLSNIY    + + A+ V + M+K+ +
Sbjct: 317 LLGACRTYKKPELGE---AAMANISRLRSGDYVLLSNIYCSQKRWDTAQGVWEMMKKKGV 373

Query: 374 KRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEE 433
            +  G S  E  G +H F AGDRSH +T+ IY+  E ++++ K  GY   T  V  D+ E
Sbjct: 374 HKVRGKSCFEWAGFLHPFKAGDRSHPETEAIYKMLEGLIQRTKLAGYVPTTDLVTMDVSE 433

Query: 434 EEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRD 493
           EEKE  + +HSEKLALA+G++ T  G+ +RI KN+RIC DCHS +K+VS++  R I +RD
Sbjct: 434 EEKEGNLYHHSEKLALAYGILKTTSGAEVRISKNLRICYDCHSWIKIVSRLLSRVIIVRD 493

Query: 494 RKHYHHFEDGSCSCLEYW 511
           R  +H FE+G CSC +YW
Sbjct: 494 RIRFHRFENGLCSCGDYW 511



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 54/263 (20%), Positives = 107/263 (40%), Gaps = 74/263 (28%)

Query: 28  RDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRN----DVSWNSILGGL 83
           R A+ VF++    DVV+WN+MI GYVR     E L+LF  M + N      ++ S++ G 
Sbjct: 93  RVAKMVFNKMRARDVVTWNTMIGGYVRKARFEEALRLFRFMNKSNVEPDKYTFASVINGC 152

Query: 84  VRFGS-----------------------------------VDDACRVFNQMPKRSLVSWV 108
            + G+                                   +  A  +F+ + + ++  W 
Sbjct: 153 AKLGALKHAQWVHELLIEKRIELNFILSSALIDMYSKCGKIQTAKEIFDGVQRNNVCIWN 212

Query: 109 VLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKK 168
            +ISG A +G   +A+ +F +M+  ++ P++   + +L+AC+  G +  G   +  ++ +
Sbjct: 213 AMISGLAVHGLALDAIKVFTKMEVENVLPDAITFLGILTACSHCGLVKEGRKYFDLMRSR 272

Query: 169 -CIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFEL 227
             ++       A++D+  + G ++                                  E 
Sbjct: 273 YSVQPHIEHYGAMVDLLGRAGLLE----------------------------------EA 298

Query: 228 FENMKSKGISPDSISYIAVLSAC 250
           F  +KS  + PD + + A+L AC
Sbjct: 299 FAMIKSMPMEPDVVIWRALLGAC 321



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 80/158 (50%), Gaps = 12/158 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++++     +  + ++LI  YS CG+++ A+ +FD     +V  WN+MI+G   +G  L+
Sbjct: 167 LLIEKRIELNFILSSALIDMYSKCGKIQTAKEIFDGVQRNNVCIWNAMISGLAVHGLALD 226

Query: 61  GLKLFDKMPQRN----DVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLI 111
            +K+F KM   N     +++  IL      G V +  + F+ M  R  V      +  ++
Sbjct: 227 AIKVFTKMEVENVLPDAITFLGILTACSHCGLVKEGRKYFDLMRSRYSVQPHIEHYGAMV 286

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
               + G  +EA A+   ++S+ +EP+  I  +LL AC
Sbjct: 287 DLLGRAGLLEEAFAM---IKSMPMEPDVVIWRALLGAC 321



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 72/163 (44%), Gaps = 5/163 (3%)

Query: 161 VYSYI-QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNG 219
           VY  I Q  C  +D +    +ID   +  +  +A  VF+    +DV  + + I G     
Sbjct: 62  VYKVIDQVFCWSIDLVELNLIIDKLMRTENYRVAKMVFNKMRARDVVTWNTMIGGYVRKA 121

Query: 220 HSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHY 279
              EA  LF  M    + PD  ++ +V++ C+ LG + K   + H +     I+      
Sbjct: 122 RFEEALRLFRFMNKSNVEPDKYTFASVINGCAKLGAL-KHAQWVHELLIEKRIELNFILS 180

Query: 280 ACMVDLLGRAGLLEEAENFIASMPMKPDNV-IWGTLLGACRVH 321
           + ++D+  + G ++ A+       ++ +NV IW  ++    VH
Sbjct: 181 SALIDMYSKCGKIQTAKEIFDG--VQRNNVCIWNAMISGLAVH 221


>gi|9758246|dbj|BAB08745.1| unnamed protein product [Arabidopsis thaliana]
          Length = 511

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/437 (43%), Positives = 287/437 (65%), Gaps = 6/437 (1%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL-DL 135
           N I+  L++ G    A +V      +++++W ++I G+ +N + +EAL   + M S  D+
Sbjct: 79  NLIIESLMKIGESGLAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKALKNMLSFTDI 138

Query: 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ 195
           +PN     S L+ACA+LG L +  WV+S +    I+L++IL +AL+D+YAKCG I  + +
Sbjct: 139 KPNKFSFASSLAACARLGDLHHAKWVHSLMIDSGIELNAILSSALVDVYAKCGDIGTSRE 198

Query: 196 VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGW 255
           VF+S    DVS + + I G A +G + EA  +F  M+++ +SPDSI+++ +L+ CSH G 
Sbjct: 199 VFYSVKRNDVSIWNAMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTTCSHCGL 258

Query: 256 VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
           +E+G  YF  M     I+P+L+HY  MVDLLGRAG ++EA   I SMP++PD VIW +LL
Sbjct: 259 LEEGKEYFGLMSRRFSIQPKLEHYGAMVDLLGRAGRVKEAYELIESMPIEPDVVIWRSLL 318

Query: 316 GACRVHRNAEMGQ-RIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIK 374
            + R ++N E+G+  I N+     +   G Y+LLSNIY  T K E+A++VR+ M K  I+
Sbjct: 319 SSSRTYKNPELGEIAIQNL----SKAKSGDYVLLSNIYSSTKKWESAQKVRELMSKEGIR 374

Query: 375 RAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEE 434
           +A G S +E  G++H F AGD SH +T+ IY+  E +++K K+ G+  +T  V+ D+ EE
Sbjct: 375 KAKGKSWLEFGGMIHRFKAGDTSHIETKAIYKVLEGLIQKTKSQGFVSDTDLVLMDVSEE 434

Query: 435 EKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDR 494
           EKE  + YHSEKLALA+ ++ + PG+ IRI KNIR+CSDCH+ +K VSK+  R I +RDR
Sbjct: 435 EKEENLNYHSEKLALAYVILKSSPGTEIRIQKNIRMCSDCHNWIKAVSKLLNRVIIMRDR 494

Query: 495 KHYHHFEDGSCSCLEYW 511
             +H FEDG CSC +YW
Sbjct: 495 IRFHRFEDGLCSCRDYW 511



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 94/226 (41%), Gaps = 41/226 (18%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDV 74
           N +I+     G    A+ V   + D +V++WN MI GYVRN +  E LK    M    D+
Sbjct: 79  NLIIESLMKIGESGLAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKALKNMLSFTDI 138

Query: 75  -----SWNSILGGLVRFGSVDDA----------------------------C-------R 94
                S+ S L    R G +  A                            C        
Sbjct: 139 KPNKFSFASSLAACARLGDLHHAKWVHSLMIDSGIELNAILSSALVDVYAKCGDIGTSRE 198

Query: 95  VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA 154
           VF  + +  +  W  +I+GFA +G   EA+ +F EM++  + P+S   + LL+ C+  G 
Sbjct: 199 VFYSVKRNDVSIWNAMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTTCSHCGL 258

Query: 155 LDYGNWVYSYIQKK-CIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
           L+ G   +  + ++  I+       A++D+  + G +  A ++  S
Sbjct: 259 LEEGKEYFGLMSRRFSIQPKLEHYGAMVDLLGRAGRVKEAYELIES 304



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 76/157 (48%), Gaps = 12/157 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +++ +    +  + ++L+  Y+ CG +  +R VF      DV  WN+MI G+  +G   E
Sbjct: 167 LMIDSGIELNAILSSALVDVYAKCGDIGTSREVFYSVKRNDVSIWNAMITGFATHGLATE 226

Query: 61  GLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLI 111
            +++F +M       + +++  +L      G +++    F  M +R      L  +  ++
Sbjct: 227 AIRVFSEMEAEHVSPDSITFLGLLTTCSHCGLLEEGKEYFGLMSRRFSIQPKLEHYGAMV 286

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148
               + GR KEA  L   ++S+ +EP+  I  SLLS+
Sbjct: 287 DLLGRAGRVKEAYEL---IESMPIEPDVVIWRSLLSS 320


>gi|145359106|ref|NP_199912.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635749|sp|Q9FI49.2|PP428_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g50990
 gi|332008636|gb|AED96019.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 534

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/437 (43%), Positives = 287/437 (65%), Gaps = 6/437 (1%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL-DL 135
           N I+  L++ G    A +V      +++++W ++I G+ +N + +EAL   + M S  D+
Sbjct: 102 NLIIESLMKIGESGLAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKALKNMLSFTDI 161

Query: 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ 195
           +PN     S L+ACA+LG L +  WV+S +    I+L++IL +AL+D+YAKCG I  + +
Sbjct: 162 KPNKFSFASSLAACARLGDLHHAKWVHSLMIDSGIELNAILSSALVDVYAKCGDIGTSRE 221

Query: 196 VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGW 255
           VF+S    DVS + + I G A +G + EA  +F  M+++ +SPDSI+++ +L+ CSH G 
Sbjct: 222 VFYSVKRNDVSIWNAMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTTCSHCGL 281

Query: 256 VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
           +E+G  YF  M     I+P+L+HY  MVDLLGRAG ++EA   I SMP++PD VIW +LL
Sbjct: 282 LEEGKEYFGLMSRRFSIQPKLEHYGAMVDLLGRAGRVKEAYELIESMPIEPDVVIWRSLL 341

Query: 316 GACRVHRNAEMGQ-RIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIK 374
            + R ++N E+G+  I N+     +   G Y+LLSNIY  T K E+A++VR+ M K  I+
Sbjct: 342 SSSRTYKNPELGEIAIQNL----SKAKSGDYVLLSNIYSSTKKWESAQKVRELMSKEGIR 397

Query: 375 RAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEE 434
           +A G S +E  G++H F AGD SH +T+ IY+  E +++K K+ G+  +T  V+ D+ EE
Sbjct: 398 KAKGKSWLEFGGMIHRFKAGDTSHIETKAIYKVLEGLIQKTKSQGFVSDTDLVLMDVSEE 457

Query: 435 EKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDR 494
           EKE  + YHSEKLALA+ ++ + PG+ IRI KNIR+CSDCH+ +K VSK+  R I +RDR
Sbjct: 458 EKEENLNYHSEKLALAYVILKSSPGTEIRIQKNIRMCSDCHNWIKAVSKLLNRVIIMRDR 517

Query: 495 KHYHHFEDGSCSCLEYW 511
             +H FEDG CSC +YW
Sbjct: 518 IRFHRFEDGLCSCRDYW 534



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 94/226 (41%), Gaps = 41/226 (18%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDV 74
           N +I+     G    A+ V   + D +V++WN MI GYVRN +  E LK    M    D+
Sbjct: 102 NLIIESLMKIGESGLAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKALKNMLSFTDI 161

Query: 75  -----SWNSILGGLVRFGSVDDA----------------------------C-------R 94
                S+ S L    R G +  A                            C        
Sbjct: 162 KPNKFSFASSLAACARLGDLHHAKWVHSLMIDSGIELNAILSSALVDVYAKCGDIGTSRE 221

Query: 95  VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA 154
           VF  + +  +  W  +I+GFA +G   EA+ +F EM++  + P+S   + LL+ C+  G 
Sbjct: 222 VFYSVKRNDVSIWNAMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTTCSHCGL 281

Query: 155 LDYGNWVYSYIQKK-CIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
           L+ G   +  + ++  I+       A++D+  + G +  A ++  S
Sbjct: 282 LEEGKEYFGLMSRRFSIQPKLEHYGAMVDLLGRAGRVKEAYELIES 327



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 76/157 (48%), Gaps = 12/157 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +++ +    +  + ++L+  Y+ CG +  +R VF      DV  WN+MI G+  +G   E
Sbjct: 190 LMIDSGIELNAILSSALVDVYAKCGDIGTSREVFYSVKRNDVSIWNAMITGFATHGLATE 249

Query: 61  GLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLI 111
            +++F +M       + +++  +L      G +++    F  M +R      L  +  ++
Sbjct: 250 AIRVFSEMEAEHVSPDSITFLGLLTTCSHCGLLEEGKEYFGLMSRRFSIQPKLEHYGAMV 309

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148
               + GR KEA  L   ++S+ +EP+  I  SLLS+
Sbjct: 310 DLLGRAGRVKEAYEL---IESMPIEPDVVIWRSLLSS 343


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/508 (38%), Positives = 304/508 (59%), Gaps = 36/508 (7%)

Query: 9   YDVF--VKNSLIQFYSVCGRVRDARWVFDES--DDLDVVSWNSMINGYVRNGEILEGLKL 64
           +D F  V N+LI  YS  G V  A+ + ++S   +LDV+++ ++++GYV+          
Sbjct: 309 FDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVK---------- 358

Query: 65  FDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEAL 124
                                 G ++ A R+F+ +  R +V+W  +I G+ QNG  ++A+
Sbjct: 359 ---------------------LGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAM 397

Query: 125 ALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMY 184
            LFR M     +PN+  L ++LS  + L +LD+G  +++   +        +  ALI MY
Sbjct: 398 ELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNALITMY 457

Query: 185 AKCGSIDLAMQVFH-SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISY 243
           AK GSI+ A  VF+  +  +D   +TS I  LA +G   EA  LFE M   GI PD I+Y
Sbjct: 458 AKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDHITY 517

Query: 244 IAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP 303
           + VLSAC+H+G VE+G  Y++ M + H I P   HYACM+DL GRAGLL+EA  FI +MP
Sbjct: 518 VGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYACMIDLFGRAGLLQEAHAFIENMP 577

Query: 304 MKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEE 363
           ++PD + WG+LL +C+VH+N E+ +     L+  +  + G Y  L+N+Y    + ENA  
Sbjct: 578 IEPDVIAWGSLLASCKVHKNVELAEVAAERLLLIEPENSGAYSALANVYSACGQWENAAN 637

Query: 364 VRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVE 423
           +RK+M+ + +K+  G S +++   VH F   D  H +   IY+   +I K+IK  G+  +
Sbjct: 638 IRKSMKDKGVKKDQGFSWVQIKNKVHIFGVDDGLHPQRDAIYEMMAKIWKEIKKMGFVPD 697

Query: 424 TRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSK 483
           T SV+ D+EEE KE ++ +HSEKLA+AFGLICT   + +RI+KN+R+C+DCHSA+K +SK
Sbjct: 698 TESVLHDLEEELKEQILSHHSEKLAIAFGLICTPENTTLRIMKNLRVCNDCHSAIKFISK 757

Query: 484 VFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           +  R+I +RD   +HHF++G CSC +YW
Sbjct: 758 LVGREIIVRDATRFHHFKNGLCSCRDYW 785



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/352 (27%), Positives = 165/352 (46%), Gaps = 43/352 (12%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++   S  Y  F++ SL       G+   AR +      L V   N+++N Y + G I +
Sbjct: 8   ILTSPSDPYTSFLQRSLKFKDPFTGKSIHAR-IIKAGLHLGVFLMNNLMNFYAKTGFIYD 66

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
             ++FD+MP ++  SWN IL G  + G +++A RVF +MP+   VSW  +I G+ Q G+ 
Sbjct: 67  AHRVFDEMPVKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQF 126

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
           + A+ +FREM S D+ P    L ++L++CA +  L  G  V+S++ K  +     +  +L
Sbjct: 127 ENAIGMFREMVSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSL 186

Query: 181 IDMYAKCGS-------------------------------IDLAMQVFHSYGDKDVSAYT 209
           ++MYAK G                                +DLA   F    ++DV ++ 
Sbjct: 187 LNMYAKSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWN 246

Query: 210 SAIFGLAMNGHSIEAFELFENMKSKGIS-PDSISYIAVLSACSHLGWVEKGFYYFHSMFD 268
           + I G   +G   EA ++F  M     S PD  +  + LSAC++L  ++ G         
Sbjct: 247 AMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLG-----KQIH 301

Query: 269 VHGIKPELDHYA----CMVDLLGRAGLLEEAENFI-ASMPMKPDNVIWGTLL 315
            H I+ E D +      ++ +  ++G +E A+  I  SM    D + +  LL
Sbjct: 302 AHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALL 353



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 97/217 (44%), Gaps = 32/217 (14%)

Query: 8   AYDVFVKNSLIQFYSVCGRVRDARWVFDESD-DLDVVSWNSMINGYVRNGEILEGLKLFD 66
           A  V V N+LI  Y+  G + DARWVF+      D ++W SMI    ++G   E L LF+
Sbjct: 444 ASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFE 503

Query: 67  KMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV-----SWVVLISGFAQN 117
           +M +     + +++  +L      G V+     +N M     +      +  +I  F + 
Sbjct: 504 RMLENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYACMIDLFGRA 563

Query: 118 GRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILC 177
           G  +EA A    ++++ +EP+     SLL++C           V+  ++   +  + +L 
Sbjct: 564 GLLQEAHAF---IENMPIEPDVIAWGSLLASCK----------VHKNVELAEVAAERLLL 610

Query: 178 ---------AALIDMYAKCGSIDLAMQVFHSYGDKDV 205
                    +AL ++Y+ CG  + A  +  S  DK V
Sbjct: 611 IEPENSGAYSALANVYSACGQWENAANIRKSMKDKGV 647


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/551 (38%), Positives = 306/551 (55%), Gaps = 44/551 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRN------ 55
           VVK+ F  D+ + NSLIQ YS  GR+ +A  VF   +  DVVSW +MI   V +      
Sbjct: 325 VVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKA 384

Query: 56  -----------------------------GEILEGLKLFDKMPQRNDVSW----NSILGG 82
                                        G +  G++L +   +   VS     NS++  
Sbjct: 385 VETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDM 444

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             +   VD+A  VF  +  +++VSW  LI G   N R  EAL  FR+M+   ++PNS  L
Sbjct: 445 YSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKE-SMKPNSVTL 503

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           +S+LSACA++GAL  G  ++++  +  +  D  L  A++DMY +CG    A+  F+S   
Sbjct: 504 ISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNSQ-K 562

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           KDV+A+   + G A  G +  A ELF+ M    I PD I++I++L ACS  G V +G  Y
Sbjct: 563 KDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEY 622

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F+ M + + + P L HYAC+VD+LGRAG L++A +FI  MP++PD  IWG LL ACR+HR
Sbjct: 623 FNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHR 682

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           N E+G+     + E D    G YILL N+Y      +   +VR  MR+R +   PGCS +
Sbjct: 683 NVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWV 742

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E+ G VH FL+GD SH +++EI    +    K+K  G+     S   +IE    +   G 
Sbjct: 743 EIKGKVHAFLSGDNSHSQSKEINGVLDGFCSKMKENGFGNLKSSFTSEIESSRADIFCG- 801

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSE+ A+AFGLI T PG  I + KN+ +C  CH+ +K +S + +R+IS+RD + YHHF+D
Sbjct: 802 HSERQAIAFGLINTAPGMPIWVTKNLYMCHSCHNMVKFISTIVRREISVRDVEEYHHFKD 861

Query: 503 GSCSCLE--YW 511
           G CSC +  YW
Sbjct: 862 GVCSCGDEGYW 872



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 115/381 (30%), Positives = 189/381 (49%), Gaps = 45/381 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V++  F  DV V N+LI  Y  CG + +AR +FD+    D +SWN+MI+GY  NG  LEG
Sbjct: 224 VIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEG 283

Query: 62  LKLFDKMPQRN--------------------------------------DVSW-NSILGG 82
           L+LF  M + +                                      D+S  NS++  
Sbjct: 284 LELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQM 343

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
               G +++A  VF++M  + +VSW  +I+    +  P +A+  ++ M+   + P+   L
Sbjct: 344 YSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITL 403

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           VS+LSACA +G LD G  ++    K  +    I+  +LIDMY+KC  +D A++VF +   
Sbjct: 404 VSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISG 463

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF-Y 261
           K+V ++TS I GL +N  S EA   F  MK + + P+S++ I+VLSAC+ +G + +G   
Sbjct: 464 KNVVSWTSLILGLRINNRSFEALLFFRQMK-ESMKPNSVTLISVLSACARIGALMRGKEI 522

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           + H++    G    L +   ++D+  R G    A N   S   K D   W  LL      
Sbjct: 523 HAHALRTGVGFDGFLPN--AILDMYVRCGRKVPALNQFNS--QKKDVTAWNILLTGYAQQ 578

Query: 322 RNAEMGQRIGNMLIESDQNHD 342
             A++   + + ++E + + D
Sbjct: 579 GQAKLAVELFDKMLELEIHPD 599



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 167/353 (47%), Gaps = 41/353 (11%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM-- 68
           V + N+L+  +   G + DA +VF +  + DV SWN ++ GY + G   E L L+ +M  
Sbjct: 132 VRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLW 191

Query: 69  ----PQ--------------------------------RNDVS-WNSILGGLVRFGSVDD 91
               P                                  +DV   N+++   V+ G + +
Sbjct: 192 AEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISN 251

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           A  +F++MPKR  +SW  +ISG+ +NG   E L LF  M+ L ++P+   + ++ SAC  
Sbjct: 252 ARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACEL 311

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSA 211
           L     G  V+ Y+ K     D  +  +LI MY+  G ++ A  VF     KDV ++T+ 
Sbjct: 312 LDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAM 371

Query: 212 IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG 271
           I  L  +    +A E ++ M+ +GI PD I+ ++VLSAC+ +G ++ G    H +    G
Sbjct: 372 IASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGI-RLHEIAIKTG 430

Query: 272 IKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
           +   +     ++D+  +   ++ A     ++  K + V W +L+   R++  +
Sbjct: 431 LVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGK-NVVSWTSLILGLRINNRS 482



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 101/232 (43%), Gaps = 40/232 (17%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + +K      V V NSLI  YS C  V +A  VF      +VVSW S+I G   N    E
Sbjct: 425 IAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFE 484

Query: 61  GLKLFDKMPQR---NDVSWNSILGGLVRFGS--------------------------VDD 91
            L  F +M +    N V+  S+L    R G+                          +D 
Sbjct: 485 ALLFFRQMKESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDM 544

Query: 92  ACRVFNQMP--------KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
             R   ++P        K+ + +W +L++G+AQ G+ K A+ LF +M  L++ P+    +
Sbjct: 545 YVRCGRKVPALNQFNSQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFI 604

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSIL--CAALIDMYAKCGSIDLA 193
           SLL AC++ G +  G   Y  I K    L   L   A ++D+  + G +D A
Sbjct: 605 SLLCACSKSGMVTEG-LEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDA 655


>gi|242045040|ref|XP_002460391.1| hypothetical protein SORBIDRAFT_02g027420 [Sorghum bicolor]
 gi|241923768|gb|EER96912.1| hypothetical protein SORBIDRAFT_02g027420 [Sorghum bicolor]
          Length = 573

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/479 (41%), Positives = 293/479 (61%), Gaps = 35/479 (7%)

Query: 13  VKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRN 72
           V+  L+  Y+VCG +  AR VFD   D D+V+                            
Sbjct: 116 VRCRLVHAYAVCGMLPHARRVFDGGTDNDMVA---------------------------- 147

Query: 73  DVSWNSILGGLVRFGSVDDACR-VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM- 130
              WN +L G  + G   D  R  F +MP R  VSW  ++S    NG   EA+A+FREM 
Sbjct: 148 ---WNCLLRGYAQEGGDADLLRDFFARMPSRDSVSWNTVLSLCVVNGEYDEAIAVFREML 204

Query: 131 QSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSI 190
            S + +P+   LVS++SA A LGAL  G W ++Y+ +K ++++  L +ALI+MY+KCG +
Sbjct: 205 ASQECQPDRVTLVSVVSAIAYLGALAQGLWAHAYVIRKGVEVEEKLSSALINMYSKCGFL 264

Query: 191 DLAMQVFHSY-GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
           + A+ VF +  G + +  + + + G   NG S  A  LF  M++ G+ P+ I++  +L+A
Sbjct: 265 EGAVYVFDNVRGKRSLDTWNAMLAGFTANGCSGRALALFTRMETTGLMPNKITFNCILNA 324

Query: 250 CSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNV 309
           CSH G VE+G   F  M  V+GI+P++ HY CMVDL  RAG+ E+AE  I  MPM+PD  
Sbjct: 325 CSHGGLVEEGMRCFQRMSRVYGIEPDIAHYGCMVDLFCRAGMFEKAEEIIQIMPMEPDAS 384

Query: 310 IWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMR 369
           +   LLGACR H+N E+G++ G+ LIE+  N    Y+LLSNIY          +VRK M 
Sbjct: 385 MLKALLGACRTHKNLELGKKAGHRLIEAAPNDHAGYVLLSNIYALDGNWGRVHKVRKLML 444

Query: 370 KRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMF 429
            R + + PG S +EL+GV+HEF++GD+SH + ++IY+  +EI +++K+ GY  +T  V+ 
Sbjct: 445 DRGVLKTPGSSSVELNGVIHEFISGDKSHSRKRDIYKMLDEICQQLKSAGYTPDTSQVLL 504

Query: 430 DIEEEE-KETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKR 487
           DI++E+ KE+ +  HSEKLA+AFGLI T PG+ IR+V N+RIC DCH+A+KL+SK++ R
Sbjct: 505 DIDDEDVKESSLAVHSEKLAIAFGLISTAPGTPIRVVNNLRICGDCHNAIKLLSKIYGR 563



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 82/169 (48%), Gaps = 17/169 (10%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDE---SDDLDVVSWNSMINGYVRNGEI 58
           V++     +  + ++LI  YS CG +  A +VFD       LD  +WN+M+ G+  NG  
Sbjct: 239 VIRKGVEVEEKLSSALINMYSKCGFLEGAVYVFDNVRGKRSLD--TWNAMLAGFTANGCS 296

Query: 59  LEGLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPK-----RSLVSWVV 109
              L LF +M       N +++N IL      G V++  R F +M +       +  +  
Sbjct: 297 GRALALFTRMETTGLMPNKITFNCILNACSHGGLVEEGMRCFQRMSRVYGIEPDIAHYGC 356

Query: 110 LISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
           ++  F + G  ++A  +   +Q + +EP++++L +LL AC     L+ G
Sbjct: 357 MVDLFCRAGMFEKAEEI---IQIMPMEPDASMLKALLGACRTHKNLELG 402


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/541 (35%), Positives = 315/541 (58%), Gaps = 39/541 (7%)

Query: 10   DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM- 68
            ++ V N L+ FYS    + DA  +FD     D VSW+ M+ G+ + G+ +     F ++ 
Sbjct: 769  NLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELI 828

Query: 69   -----PQRNDVSW---------NSILGGLV-----RFG-------------------SVD 90
                 P    + +         N  +G L+     +FG                    ++
Sbjct: 829  RCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIE 888

Query: 91   DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
            DA  +F++M +R LV+W V+I G+A+ G   E+L LF +M+   + P+   +V+++ ACA
Sbjct: 889  DARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACA 948

Query: 151  QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
            +LGA+     +  YIQ+K  +LD IL  A+IDM+AKCG ++ A ++F    +K+V ++++
Sbjct: 949  KLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSA 1008

Query: 211  AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
             I     +G   +A +LF  M   GI P+ I+ +++L ACSH G VE+G  +F  M++ +
Sbjct: 1009 MIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSXMWEDY 1068

Query: 271  GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
             ++ ++ HY C+VDLLGRAG L+EA   I SM  + D  +WG  LGACR H++  + ++ 
Sbjct: 1069 SVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEGLWGAFLGACRTHKDVXLAEKA 1128

Query: 331  GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHE 390
               L+E    + G YILLSNIY    + E+  ++R  M +R++K+ PG + IE+D   H+
Sbjct: 1129 ATSLLELQPQNPGHYILLSNIYANAGRWEDVAKIRDLMSQRRLKKIPGWTWIEVDNKSHQ 1188

Query: 391  FLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALA 450
            F  GD +H +++EIY+  + +  K++  GY  +T  V+ D++EE K  ++  HSEKLA+A
Sbjct: 1189 FSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYTHSEKLAIA 1248

Query: 451  FGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEY 510
            FGLI T   + IRI+KN+R+C DCH+  KLVS +  R I +RD   +HHF++G+CSC +Y
Sbjct: 1249 FGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDY 1308

Query: 511  W 511
            W
Sbjct: 1309 W 1309



 Score =  332 bits (850), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 176/499 (35%), Positives = 288/499 (57%), Gaps = 39/499 (7%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM- 68
           ++ V N LI FYS    + DA  +FD     D VSW+ M+ G+ + G+ +     F ++ 
Sbjct: 93  NIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELI 152

Query: 69  -----PQRNDVSW---------NSILGGLV-----RFG-------------------SVD 90
                P    + +         N  +G L+     +FG                    ++
Sbjct: 153 RCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIE 212

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           DA  +F++M +R LV+W V+I G+A+ G+  E+L LF +M+   + P+   +V+++ ACA
Sbjct: 213 DARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACA 272

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
           +LGA+     +  YIQ+K  +LD IL  A+IDMYAKCG ++ A ++F    +K+V ++++
Sbjct: 273 KLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSA 332

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I     +G   +A +LF  M S G+ PD I+  ++L ACSH G VE+G  +F SM++ +
Sbjct: 333 MIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACSHAGLVEEGLRFFSSMWEDY 392

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
            ++ ++ HY C+VDLLGRAG L+EA   I SM ++ D  +WG  LGACR H++  + ++ 
Sbjct: 393 SVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGLWGAFLGACRTHKDVVLAEKA 452

Query: 331 GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHE 390
              L+E    + G Y+LLSNIY    + E+  ++R  M +R++K+ PG + IE+D   H+
Sbjct: 453 ATSLLELQSQNPGHYVLLSNIYANAGRWEDVAKIRDLMSQRRLKKTPGWTWIEVDNKSHQ 512

Query: 391 FLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALA 450
           F  GD +H +++EIY+  + +  K++  GY  +T  V+ D++EE K  ++  HSEKLA+A
Sbjct: 513 FSVGDTTHPRSKEIYEMLKSLSNKLELVGYVPDTNFVLHDVDEELKIGILYTHSEKLAIA 572

Query: 451 FGLICTKPGSVIRIVKNIR 469
           FGLI T   + IRI+KN+R
Sbjct: 573 FGLIATPEHTPIRIIKNLR 591



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 134/271 (49%), Gaps = 10/271 (3%)

Query: 71   RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM 130
            +N +  N ++     + ++DDA  +F+ M  R  VSW V++ GFA+ G        FRE+
Sbjct: 768  QNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFREL 827

Query: 131  QSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSI 190
                  P++  L  ++ AC  L  L  G  ++  + K  + LD  +CAAL+DMY KC  I
Sbjct: 828  IRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREI 887

Query: 191  DLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250
            + A  +F    ++D+  +T  I G A  G++ E+  LF+ M+ +G+ PD ++ + V+ AC
Sbjct: 888  EDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFAC 947

Query: 251  SHLGWVEKGFYYFHSMFD-VHGIKPELDHY--ACMVDLLGRAGLLEEAENFIASMPMKPD 307
            + LG + K      ++ D +   K +LD      M+D+  + G +E A      M  K  
Sbjct: 948  AKLGAMHKA----RTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEK-- 1001

Query: 308  NVI-WGTLLGACRVHRNAEMGQRIGNMLIES 337
            NVI W  ++ A   H        +  M++ S
Sbjct: 1002 NVISWSAMIAAYGYHGQGRKALDLFPMMLRS 1032



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 111/239 (46%), Gaps = 40/239 (16%)

Query: 1    MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
            +V K     D FV  +L+  Y  C  + DAR++FD+  + D+V+W  MI GY   G   E
Sbjct: 861  IVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANE 920

Query: 61   GLKLFDKMP----------------------------------QRNDVSWNSILGGLV-- 84
             L LFDKM                                   QR     + ILG  +  
Sbjct: 921  SLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMID 980

Query: 85   ---RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
               + G V+ A  +F++M +++++SW  +I+ +  +G+ ++AL LF  M    + PN   
Sbjct: 981  MHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKIT 1040

Query: 142  LVSLLSACAQLGALDYGNWVYSYI-QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
            LVSLL AC+  G ++ G   +S + +   ++ D      ++D+  + G +D A+++  S
Sbjct: 1041 LVSLLYACSHAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXS 1099



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 112/239 (46%), Gaps = 40/239 (16%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V K     D FV  +L+  Y  C  + DAR++FD+  + D+V+W  MI GY   G+  E
Sbjct: 185 IVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANE 244

Query: 61  GLKLFDKMP----------------------------------QRNDVSWNSILGGLV-- 84
            L LF+KM                                   QR     + ILG  +  
Sbjct: 245 SLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMID 304

Query: 85  ---RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G V+ A  +F++M +++++SW  +I+ +  +G+ ++AL LF  M S  + P+   
Sbjct: 305 MYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKIT 364

Query: 142 LVSLLSACAQLGALDYGNWVYSYI-QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
           L SLL AC+  G ++ G   +S + +   ++ D      ++D+  + G +D A+++  S
Sbjct: 365 LASLLYACSHAGLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKS 423


>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 637

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 203/547 (37%), Positives = 303/547 (55%), Gaps = 40/547 (7%)

Query: 5   NSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKL 64
           +    D  +   L+  Y+ CG V  AR +FD     +V  WN +I  Y R+G     ++L
Sbjct: 91  SGLGPDTVLATKLVDLYAACGLVGHARRLFDGMPKRNVFLWNVLIRAYARDGPHEVAIQL 150

Query: 65  FDKMPQRN--------------------------------DVSWNS---ILGGLV----R 85
           +  M                                       W     +  GLV    +
Sbjct: 151 YRGMVDYGVEPDNFTYPLALKACAALLDLETGREVHERVLGTHWGEDMFVCAGLVDMYAK 210

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
            G VDDA  VF+++  R  V W  +I+ + QNGRP EAL+L R+M +  + P  A LVS 
Sbjct: 211 CGCVDDARAVFDRIRVRDSVVWNSMIAAYGQNGRPMEALSLCRDMAANGVGPTIATLVST 270

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
           +SA A   AL  G  ++ +  ++       L  +L+DMYAK G + +A  +F     +++
Sbjct: 271 ISAAADAAALPRGRELHGFGWRRGFDRQDKLKTSLVDMYAKSGWVQVARVLFEQLMKREL 330

Query: 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKG-ISPDSISYIAVLSACSHLGWVEKGFYYFH 264
            ++ + I G  M+GH  EA +LF  M+ +  ++PD+I+++ VLSAC+H G V++   +F 
Sbjct: 331 VSWNAMICGYGMHGHFDEALKLFNKMRVEAQVTPDNITFVGVLSACNHGGMVKEAKEFFG 390

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
            M DV+ IKP + H+ C+VD+LG AG  EEA + I  MPM+PD+ IWG LL  C++H+N 
Sbjct: 391 LMVDVYSIKPTVQHFTCLVDVLGHAGRFEEAYDLIKGMPMQPDSGIWGALLNGCKIHKNV 450

Query: 325 EMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIEL 384
           E+G+     LIE +    G Y+LLSNIY ++ K E A  VRK M  R +K+  GCS IEL
Sbjct: 451 ELGELALQKLIELEPEDAGNYVLLSNIYAQSGKWEKAARVRKLMTNRGLKKIIGCSWIEL 510

Query: 385 DGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHS 444
            G  H FL GD SH ++ EIY+  E +   + + GY  +T  V  D+ ++EK  ++  HS
Sbjct: 511 KGKTHGFLVGDASHPRSAEIYEELERLEGLMSDAGYMPDTMPVFHDVGDDEKRNMMRSHS 570

Query: 445 EKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGS 504
           E+LA+AFGLI T  G+ + + KN+R+C DCH  +KL+S++ +R+I IRD   YHHF +G 
Sbjct: 571 ERLAIAFGLISTPSGTKLLVTKNLRVCEDCHVVIKLISQIVQREIIIRDVNRYHHFVNGE 630

Query: 505 CSCLEYW 511
           CSC +YW
Sbjct: 631 CSCKDYW 637



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 133/335 (39%), Gaps = 77/335 (22%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+   +  D+FV   L+  Y+ CG V DAR VFD     D V WNSMI  Y +NG  +E 
Sbjct: 189 VLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMIAAYGQNGRPMEA 248

Query: 62  LKLFDKMP---------------------------------------QRNDVSWNSILGG 82
           L L   M                                         R D    S++  
Sbjct: 249 LSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRELHGFGWRRGFDRQDKLKTSLVDM 308

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQ-SLDLEPNSAI 141
             + G V  A  +F Q+ KR LVSW  +I G+  +G   EAL LF +M+    + P++  
Sbjct: 309 YAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHFDEALKLFNKMRVEAQVTPDNIT 368

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
            V +LSAC   G                +K        ++D+Y    SI   +Q F    
Sbjct: 369 FVGVLSACNHGGM---------------VKEAKEFFGLMVDVY----SIKPTVQHF---- 405

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
                  T  +  L   G   EA++L + M    + PDS  + A+L+ C     VE G  
Sbjct: 406 -------TCLVDVLGHAGRFEEAYDLIKGMP---MQPDSGIWGALLNGCKIHKNVELGEL 455

Query: 262 YFHSMFDVHGIKPE-LDHYACMVDLLGRAGLLEEA 295
               + +   ++PE   +Y  + ++  ++G  E+A
Sbjct: 456 ALQKLIE---LEPEDAGNYVLLSNIYAQSGKWEKA 487



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 88/184 (47%), Gaps = 7/184 (3%)

Query: 137 PNS-AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ 195
           PNS     S+L +C    +L  G  ++  +    +  D++L   L+D+YA CG +  A +
Sbjct: 59  PNSYHHYTSVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGHARR 118

Query: 196 VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGW 255
           +F     ++V  +   I   A +G    A +L+  M   G+ PD+ +Y   L AC+ L  
Sbjct: 119 LFDGMPKRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAALLD 178

Query: 256 VEKGFYYFHSMFDVHGIKPELDHYAC--MVDLLGRAGLLEEAENFIASMPMKPDNVIWGT 313
           +E G      +   H  +   D + C  +VD+  + G +++A      + ++ D+V+W +
Sbjct: 179 LETGREVHERVLGTHWGE---DMFVCAGLVDMYAKCGCVDDARAVFDRIRVR-DSVVWNS 234

Query: 314 LLGA 317
           ++ A
Sbjct: 235 MIAA 238


>gi|297743669|emb|CBI36552.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/550 (35%), Positives = 296/550 (53%), Gaps = 94/550 (17%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + +K  F    +V   L   YS CG +  AR +F +    D+VS+N+MI+GY  N E   
Sbjct: 232 LAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETES 291

Query: 61  GLKLFDKMPQRNDVSWNSILGGLV------------------------------------ 84
            ++LF ++    +   +S + GL+                                    
Sbjct: 292 SVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTT 351

Query: 85  ---RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              R   ++ A  +F++  ++SL SW  +ISG+AQNG  ++A++LF+EMQ  ++ PN   
Sbjct: 352 VYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVT 411

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           + S+LSACAQLGAL  G WV+  I ++                                 
Sbjct: 412 VTSILSACAQLGALSLGKWVHDLINRE--------------------------------- 438

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
                ++ S IF                 M    +SP  +++++VL ACSH G V +G  
Sbjct: 439 -----SFESNIF-----------------MLHSRVSPTGVTFLSVLYACSHAGLVREGDE 476

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            F SM   HG +P  +HYACMVDLLGRAG L++A +FI  MP++P   +WG LLGAC +H
Sbjct: 477 IFRSMVHDHGFEPLPEHYACMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLGACMIH 536

Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
           ++A + +   + L E D  + G Y+LLSNIY        A  VR  +++RK+ + PGC+L
Sbjct: 537 KDANLARLASDKLFELDPQNVGYYVLLSNIYSAGQNYPEAASVRGVVKRRKLAKTPGCTL 596

Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIG 441
           IE+   +H F +GD+SH +   IY   E++  K++  G+  ET + + D+EEEEKE ++ 
Sbjct: 597 IEVANTLHIFTSGDQSHPQATAIYAMLEKLTGKMREAGFQTETGTALHDVEEEEKELMVK 656

Query: 442 YHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
            HSEKLA+AFGLI ++PG+ IRI+KN+R+C DCH+A K +SK+ +R I +RD   +HHF+
Sbjct: 657 VHSEKLAIAFGLITSEPGTEIRIIKNLRVCLDCHNATKFISKITERVIVVRDANRFHHFK 716

Query: 502 DGSCSCLEYW 511
           DG CSC +YW
Sbjct: 717 DGICSCGDYW 726



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 80/171 (46%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136
           ++I+    +F  V  A +VF+ M +R  V W  ++SG  +N    EA+ +F +M    + 
Sbjct: 145 SAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIG 204

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
            +S  + ++L   A+L  L  G  +     K      + +   L  +Y+KCG I+ A  +
Sbjct: 205 FDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLL 264

Query: 197 FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVL 247
           F   G  D+ +Y + I G   N  +  +  LF+ +   G   +S S + ++
Sbjct: 265 FGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLI 315


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 213/545 (39%), Positives = 308/545 (56%), Gaps = 42/545 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNG----- 56
           V+K  F  +V V NSLIQ +S  G   +A  VF + +  D+VSW +MI+GY +NG     
Sbjct: 322 VIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKA 381

Query: 57  ----EILE-------------------GLKLFDK------MPQRNDVS-----WNSILGG 82
                I+E                   GL L DK         R  ++      NS++  
Sbjct: 382 VETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDM 441

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             +   +D A  VF+++P ++++SW  +I G   N R  EAL  F++M  L L+PNS  L
Sbjct: 442 YSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQM-ILSLKPNSVTL 500

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           VS+LSACA++GAL  G  ++++  +  +  D  L  AL+DMY +CG ++ A   F+S  +
Sbjct: 501 VSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNS-CE 559

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           KDV+++   + G A  G    A ELF  M    ++PD I++ ++L ACS  G V  G  Y
Sbjct: 560 KDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEY 619

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F SM     I P L HYA +VDLLGRAG LE+A  FI  MP+ PD  IWG LL ACR+++
Sbjct: 620 FESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQ 679

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           N E+G+     + E D    G YILL N+Y ++ K +    VRK MR+ ++   PGCS +
Sbjct: 680 NVELGELAAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMRENRLTVDPGCSWV 739

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E+ G VH FL GD  H + +EI    E   +K++  G ++   S   DI+  + E   G 
Sbjct: 740 EVAGQVHAFLTGDDFHPQIKEINAVLEGFYEKMEATGLSMSKDSRRDDIDASKAEIFCG- 798

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSE+LA+AFGLI T PG+ I + KN+ +C +CH+ +K +SKV +R IS+RD + +HHF+D
Sbjct: 799 HSERLAIAFGLINTVPGTPIWVTKNLYMCENCHNTVKFISKVVRRGISVRDTEQFHHFKD 858

Query: 503 GSCSC 507
           G CSC
Sbjct: 859 GVCSC 863



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 124/381 (32%), Positives = 188/381 (49%), Gaps = 45/381 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V++  F  DV V N+LI  Y  CG +  AR VFD     D +SWN+MI+GY  N   LEG
Sbjct: 221 VIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEG 280

Query: 62  LKLF----------DKMPQRNDVSWNSILG---------------GLV------------ 84
           L+LF          D M   + +S    LG               G V            
Sbjct: 281 LRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQM 340

Query: 85  --RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
               G  D+A  VF++M  + LVSW  +ISG+ +NG P++A+  +  M+   + P+   +
Sbjct: 341 HSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITI 400

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S+LSACA LG LD G  ++ +  +  +    I+  +LIDMY+KC  ID A++VFH   +
Sbjct: 401 ASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPN 460

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF-Y 261
           K+V ++TS I GL +N  S EA   F+ M    + P+S++ ++VLSAC+ +G +  G   
Sbjct: 461 KNVISWTSIILGLRLNYRSFEALFFFQQM-ILSLKPNSVTLVSVLSACARIGALSCGKEI 519

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           + H++    G    L +   ++D+  R G +E A N   S   + D   W  LL      
Sbjct: 520 HAHALRTGLGFDGFLPN--ALLDMYVRCGRMEPAWNQFNS--CEKDVASWNILLTGYAQQ 575

Query: 322 RNAEMGQRIGNMLIESDQNHD 342
               +   + + +IESD N D
Sbjct: 576 GKGGLAVELFHKMIESDVNPD 596



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/360 (27%), Positives = 170/360 (47%), Gaps = 43/360 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V K      V + N+L+  +   G + +A +VF +  + D+ SWN ++ GY + G   E 
Sbjct: 120 VSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEA 179

Query: 62  LKLFDKM---PQRNDV-SWNSIL---GGL------------------------------- 83
           L L+ +M     R DV ++  +L   GGL                               
Sbjct: 180 LNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITM 239

Query: 84  -VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
            V+ G +  A  VF++MP+R  +SW  +ISG+ +N    E L LF  M+   ++P+   +
Sbjct: 240 YVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTM 299

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S++SAC  LG    G  V+ Y+ K     +  +  +LI M++  G  D A  VF     
Sbjct: 300 TSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEF 359

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           KD+ ++T+ I G   NG   +A E +  M+ +G+ PD I+  +VLSAC+ LG ++KG   
Sbjct: 360 KDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGI-M 418

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVI-WGTLLGACRVH 321
            H   D  G+   +     ++D+  +   +++A      +P K  NVI W +++   R++
Sbjct: 419 LHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNK--NVISWTSIILGLRLN 476


>gi|356523117|ref|XP_003530188.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14330-like [Glycine max]
          Length = 650

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 207/551 (37%), Positives = 300/551 (54%), Gaps = 43/551 (7%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVF--DESDDLDVVSWNSMINGYVRNGEILEG 61
           +N    +  +K  LI  YSVCGRV +AR VF  D+    +   W +M  GY RNG   E 
Sbjct: 100 QNRVLENPTLKTKLITLYSVCGRVNEARRVFQIDDEKPPEEPVWVAMAIGYSRNGFSHEA 159

Query: 62  LKLFDKM----------------------------------------PQRNDVSWNSILG 81
           L L+  M                                         + + V  N++LG
Sbjct: 160 LLLYRDMLSCCVKPGNFAFSMALKACSDLDNALVGRAIHAQIVKHDVGEADQVVNNALLG 219

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
             V  G  D+  +VF +MP+R++VSW  LI+GFA  GR  E L+ FR MQ   +  +   
Sbjct: 220 LYVEIGCFDEVLKVFEEMPQRNVVSWNTLIAGFAGQGRVFETLSAFRVMQREGMGFSWIT 279

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           L ++L  CAQ+ AL  G  ++  I K     D  L  +L+DMYAKCG I    +VF    
Sbjct: 280 LTTMLPVCAQVTALHSGKEIHGQILKSRKNADVPLLNSLMDMYAKCGEIGYCEKVFDRMH 339

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
            KD++++ + + G ++NG   EA  LF+ M   GI P+ I+++A+LS CSH G   +G  
Sbjct: 340 SKDLTSWNTMLAGFSINGQIHEALCLFDEMIRYGIEPNGITFVALLSGCSHSGLTSEGKR 399

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            F ++    G++P L+HYAC+VD+LGR+G  +EA +   ++PM+P   IWG+LL +CR++
Sbjct: 400 LFSNVMQDFGVQPSLEHYACLVDILGRSGKFDEALSVAENIPMRPSGSIWGSLLNSCRLY 459

Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
            N  + + +   L E + N+ G Y++LSNIY      E+ + VR+ M    +K+  GCS 
Sbjct: 460 GNVALAEVVAERLFEIEPNNPGNYVMLSNIYANAGMWEDVKRVREMMALTGMKKDAGCSW 519

Query: 382 IELDGVVHEFLAGDRSHEK-TQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVI 440
           I++   +H F+AG  S  + + E  + W E+   +KN GY   T  V+ DI EE K   +
Sbjct: 520 IQIKHKIHTFVAGGSSDFRCSAEYKKIWNELSNAVKNLGYVPNTGVVLHDINEEMKAVWV 579

Query: 441 GYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF 500
             HSE+LA  F LI T  G  IRI KN+R+C DCHS MK VSKV +R I +RD   +HHF
Sbjct: 580 CEHSERLAAVFALINTGAGMPIRITKNLRVCVDCHSWMKAVSKVTRRLIVLRDTNRFHHF 639

Query: 501 EDGSCSCLEYW 511
           E+GSCSC +YW
Sbjct: 640 ENGSCSCKDYW 650



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 86/161 (53%), Gaps = 12/161 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K+    DV + NSL+  Y+ CG +     VFD     D+ SWN+M+ G+  NG+I E 
Sbjct: 303 ILKSRKNADVPLLNSLMDMYAKCGEIGYCEKVFDRMHSKDLTSWNTMLAGFSINGQIHEA 362

Query: 62  LKLFDKM----PQRNDVSWNSILGGLVRFGSVDDACRVFNQM-----PKRSLVSWVVLIS 112
           L LFD+M     + N +++ ++L G    G   +  R+F+ +      + SL  +  L+ 
Sbjct: 363 LCLFDEMIRYGIEPNGITFVALLSGCSHSGLTSEGKRLFSNVMQDFGVQPSLEHYACLVD 422

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153
              ++G+  EAL++    +++ + P+ +I  SLL++C   G
Sbjct: 423 ILGRSGKFDEALSV---AENIPMRPSGSIWGSLLNSCRLYG 460


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/548 (36%), Positives = 309/548 (56%), Gaps = 39/548 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +++ F YD  V N  +  Y+ CG +  A  VF   +   V SWN++I G  +NG+  + L
Sbjct: 263 IRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKAL 322

Query: 63  KLFDKMPQRNDVS-WNSI--------------------------------------LGGL 83
            L+ +M     V  W +I                                      L   
Sbjct: 323 NLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLSLY 382

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
           +  G    A  +F+ M ++S VSW  +ISG++QNG P++AL LFR++ S   +P+   +V
Sbjct: 383 IHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVV 442

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           S+L AC+Q  AL  G   + Y  K  +  D  +  + IDMYAK G I  +  VF    +K
Sbjct: 443 SVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGCIKESRSVFDGLKNK 502

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           D++++ + I    ++G   E+ ELFE M+  G  PD  ++I +L+ CSH G VE+G  YF
Sbjct: 503 DLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGILTVCSHAGLVEEGLKYF 562

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
           + M + HGI+P+L+HYAC++D+LGRAG L++A   +  MP +PD+ +W +LL  CR    
Sbjct: 563 NEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPDSRVWSSLLSFCRNFGE 622

Query: 324 AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE 383
            E+GQ +   L+E +  +   Y+ LSN+Y  + + ++   VR+ ++   +++  GCS IE
Sbjct: 623 LEIGQIVAEKLLELEPKNVENYVSLSNLYAGSGRWDDVRRVRQMIKDIGLQKDAGCSWIE 682

Query: 384 LDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYH 443
           L G VH F+AGD    +++E+   W ++ KK+   GY   T +V+ D++EE+K   +  H
Sbjct: 683 LGGKVHSFVAGDNLLPQSKEMSMTWRKLEKKMCKIGYKPNTSAVLHDVDEEKKIEKLRGH 742

Query: 444 SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
           SEKLA+ FGL+ T  G+ +RI KN+RIC DCH+A K +S+V  R+I IRD K +HHF+DG
Sbjct: 743 SEKLAICFGLLNTTKGTTLRIFKNLRICVDCHNASKFMSEVTGREIIIRDNKRFHHFKDG 802

Query: 504 SCSCLEYW 511
            CSC +YW
Sbjct: 803 LCSCGDYW 810



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/267 (30%), Positives = 134/267 (50%), Gaps = 8/267 (2%)

Query: 56  GEILEGLKLFDKMPQRNDV-SWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGF 114
           GE++ G+ +  KM    DV   N+++    +FG VD A +VF+ MP R+LVSW  +ISGF
Sbjct: 50  GEVIHGMVI--KMGLLLDVFVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGF 107

Query: 115 AQNGRPKEALALFREMQSLD--LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKL 172
           ++NG  K+   +  EM + +  L P+ A LV++L  CA+   +  G  ++    K  +  
Sbjct: 108 SENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSE 167

Query: 173 DSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMK 232
           D  +  +L+DMY+KCG +  A  +F     K+  ++ + I GL   G+  EAF LF  M+
Sbjct: 168 DVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQ 227

Query: 233 -SKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGL 291
             + I  + ++ + +L AC  +  + +     H     HG + +       V    + G+
Sbjct: 228 MQEDIEVNEVTVLNILPACLEISQL-RSLKELHGYSIRHGFQYDELVANGFVAAYAKCGM 286

Query: 292 LEEAENFIASMPMKPDNVIWGTLLGAC 318
           L  AE    SM  K  N  W  L+G C
Sbjct: 287 LICAERVFYSMETKTVNS-WNALIGGC 312



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 93/321 (28%), Positives = 148/321 (46%), Gaps = 45/321 (14%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNG---- 56
           MV+K     DVFV N+LI  Y   G V  A  VF      ++VSWNS+I+G+  NG    
Sbjct: 56  MVIKMGLLLDVFVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKD 115

Query: 57  ------EIL---EGL-----KLFDKMP---QRNDVSW--------------------NSI 79
                 E++   EGL      L   +P   +  DV                      NS+
Sbjct: 116 CFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSL 175

Query: 80  LGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQ-SLDLEPN 138
           +    + G + +A  +F++  +++ VSW  +I G    G   EA  LFREMQ   D+E N
Sbjct: 176 VDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVN 235

Query: 139 SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH 198
              ++++L AC ++  L     ++ Y  +   + D ++    +  YAKCG +  A +VF+
Sbjct: 236 EVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFY 295

Query: 199 SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEK 258
           S   K V+++ + I G A NG   +A  L+  M   G+ PD  +  ++L A +HL  +  
Sbjct: 296 SMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRY 355

Query: 259 GFYYFHSMFDVHGIKPELDHY 279
           G    H     HG+  E+D +
Sbjct: 356 G-KEVHGFVLRHGL--EIDSF 373



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 118/264 (44%), Gaps = 44/264 (16%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+++    D F+  SL+  Y  CG    AR +FD  ++   VSWN+MI+GY +NG   + 
Sbjct: 363 VLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDA 422

Query: 62  LKLFDKMP----QRNDVSWNSILGGL---------------------------------- 83
           L LF K+     Q +D++  S+LG                                    
Sbjct: 423 LILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDM 482

Query: 84  -VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G + ++  VF+ +  + L SW  +I+ +  +G  +E++ LF  M+ +   P+    
Sbjct: 483 YAKSGCIKESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTF 542

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKC---IKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
           + +L+ C+  G ++ G   ++ +Q       KL+   C  ++DM  + G +D A+++ H 
Sbjct: 543 IGILTVCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYAC--VMDMLGRAGRLDDALRLVHE 600

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIE 223
             ++  S   S++     N   +E
Sbjct: 601 MPEQPDSRVWSSLLSFCRNFGELE 624



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 89/177 (50%), Gaps = 8/177 (4%)

Query: 145 LLSACAQLGALD--YGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           ++ AC   G+LD   G  ++  + K  + LD  +  ALI MY K G +D A++VFH    
Sbjct: 37  VIKACT--GSLDRGLGEVIHGMVIKMGLLLDVFVGNALIAMYGKFGFVDAAVKVFHYMPV 94

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKS--KGISPDSISYIAVLSACSHLGWVEKGF 260
           +++ ++ S I G + NG S + F++   M +  +G+ PD  + + VL  C+    V+ G 
Sbjct: 95  RNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGI 154

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
              H +    G+  ++     +VD+  + G L EA+  +     + + V W T++G 
Sbjct: 155 -RIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQ-MLFDKNNRKNAVSWNTMIGG 209


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/551 (38%), Positives = 306/551 (55%), Gaps = 44/551 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRN------ 55
           VVK+ F  D+ + NSLIQ YS  GR+ +A  VF   +  DVVSW +MI   V +      
Sbjct: 325 VVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKA 384

Query: 56  -----------------------------GEILEGLKLFDKMPQRNDVSW----NSILGG 82
                                        G +  G++L +   +   VS     NS++  
Sbjct: 385 VETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDM 444

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             +   VD+A  VF  +  +++VSW  LI G   N R  EAL  FR+M+   ++PNS  L
Sbjct: 445 YSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKE-SMKPNSVTL 503

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           +S+LSACA++GAL  G  ++++  +  +  D  L  A++DMY +CG    A+  F+S   
Sbjct: 504 ISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNSQ-K 562

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           KDV+A+   + G A  G +  A ELF+ M    I PD I++I++L ACS  G V +G  Y
Sbjct: 563 KDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEY 622

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F+ M + + + P L HYAC+VD+LGRAG L++A +FI  MP++PD  IWG LL ACR+HR
Sbjct: 623 FNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHR 682

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           N E+G+     + E D    G YILL N+Y      +   +VR  MR+R +   PGCS +
Sbjct: 683 NVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWV 742

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E+ G VH FL+GD SH +++EI    +    K+K  G+     S   +IE    +   G 
Sbjct: 743 EIKGKVHAFLSGDNSHSQSKEINGVLDGFCSKMKENGFGNLKSSFTSEIESSRADIFCG- 801

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSE+ A+AFGLI T PG  I + KN+ +C  CH+ +K +S + +R+IS+RD + YHHF+D
Sbjct: 802 HSERQAIAFGLINTAPGMPIWVXKNLYMCHSCHNMVKFISTIVRREISVRDVEEYHHFKD 861

Query: 503 GSCSCLE--YW 511
           G CSC +  YW
Sbjct: 862 GVCSCGDEGYW 872



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 115/381 (30%), Positives = 189/381 (49%), Gaps = 45/381 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V++  F  DV V N+LI  Y  CG + +AR +FD+    D +SWN+MI+GY  NG  LEG
Sbjct: 224 VIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEG 283

Query: 62  LKLFDKMPQRN--------------------------------------DVSW-NSILGG 82
           L+LF  M + +                                      D+S  NS++  
Sbjct: 284 LELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQM 343

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
               G +++A  VF++M  + +VSW  +I+    +  P +A+  ++ M+   + P+   L
Sbjct: 344 YSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITL 403

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           VS+LSACA +G LD G  ++    K  +    I+  +LIDMY+KC  +D A++VF +   
Sbjct: 404 VSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISG 463

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF-Y 261
           K+V ++TS I GL +N  S EA   F  MK + + P+S++ I+VLSAC+ +G + +G   
Sbjct: 464 KNVVSWTSLILGLRINNRSFEALLFFRQMK-ESMKPNSVTLISVLSACARIGALMRGKEI 522

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           + H++    G    L +   ++D+  R G    A N   S   K D   W  LL      
Sbjct: 523 HAHALRTGVGFDGFLPN--AILDMYVRCGRKVPALNQFNS--QKKDVTAWNILLTGYAQQ 578

Query: 322 RNAEMGQRIGNMLIESDQNHD 342
             A++   + + ++E + + D
Sbjct: 579 GQAKLAVELFDKMLELEIHPD 599



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 167/353 (47%), Gaps = 41/353 (11%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM-- 68
           V + N+L+  +   G + DA +VF +  + DV SWN ++ GY + G   E L L+ +M  
Sbjct: 132 VRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLW 191

Query: 69  ----PQ--------------------------------RNDVS-WNSILGGLVRFGSVDD 91
               P                                  +DV   N+++   V+ G + +
Sbjct: 192 AEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISN 251

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           A  +F++MPKR  +SW  +ISG+ +NG   E L LF  M+ L ++P+   + ++ SAC  
Sbjct: 252 ARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACEL 311

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSA 211
           L     G  V+ Y+ K     D  +  +LI MY+  G ++ A  VF     KDV ++T+ 
Sbjct: 312 LDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAM 371

Query: 212 IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG 271
           I  L  +    +A E ++ M+ +GI PD I+ ++VLSAC+ +G ++ G    H +    G
Sbjct: 372 IASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGI-RLHEIAIKTG 430

Query: 272 IKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
           +   +     ++D+  +   ++ A     ++  K + V W +L+   R++  +
Sbjct: 431 LVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGK-NVVSWTSLILGLRINNRS 482



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 101/232 (43%), Gaps = 40/232 (17%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + +K      V V NSLI  YS C  V +A  VF      +VVSW S+I G   N    E
Sbjct: 425 IAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFE 484

Query: 61  GLKLFDKMPQR---NDVSWNSILGGLVRFGS--------------------------VDD 91
            L  F +M +    N V+  S+L    R G+                          +D 
Sbjct: 485 ALLFFRQMKESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDM 544

Query: 92  ACRVFNQMP--------KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
             R   ++P        K+ + +W +L++G+AQ G+ K A+ LF +M  L++ P+    +
Sbjct: 545 YVRCGRKVPALNQFNSQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFI 604

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSIL--CAALIDMYAKCGSIDLA 193
           SLL AC++ G +  G   Y  I K    L   L   A ++D+  + G +D A
Sbjct: 605 SLLCACSKSGMVTEG-LEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDA 655


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 203/580 (35%), Positives = 314/580 (54%), Gaps = 70/580 (12%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           + K  +   +FV + L+  Y+  G + DA  +F+E  + ++V +N+MI G +R   I+E 
Sbjct: 164 IFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEA 223

Query: 62  LKLFDKMPQRNDVSWNSILGGLVR-------------------------FGSVDDAC--- 93
            +LFD MP+++ +SW +I+ GL +                         FGSV  AC   
Sbjct: 224 EQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGF 283

Query: 94  ------------------------------------------RVFNQMPKRSLVSWVVLI 111
                                                      VF +M  ++++SW  ++
Sbjct: 284 LALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAML 343

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK 171
            G+ QNG  +EA+ +F +MQ  ++ P+   L S++S+CA L +L+ G   +       + 
Sbjct: 344 VGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASGLI 403

Query: 172 LDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM 231
               +  ALI +Y KCGS++ A Q+FH    +D  ++T+ + G A  G + E   LFE M
Sbjct: 404 CFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETM 463

Query: 232 KSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGL 291
            + GI PD ++++ VLSACS  G VEKG++YF  M   H I P  DHY CM+DLL RAG 
Sbjct: 464 LAHGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGR 523

Query: 292 LEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNI 351
           LEEA+NFI  MP  PD + W TLL +CR++ N E+G+     L + +  +   YILLS+I
Sbjct: 524 LEEAKNFINQMPFSPDAIGWATLLSSCRLNGNLEIGKWAAESLHKLEPQNPASYILLSSI 583

Query: 352 YVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEI 411
           Y    K ++  ++RK MR+  +K+ PG S I+    VH F A DRS   + +IY   E +
Sbjct: 584 YAAKGKWDDVAKLRKGMREMGVKKEPGHSWIKYKNKVHIFSADDRSSPFSDQIYAKLESL 643

Query: 412 VKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRIC 471
             K+   GY  +   V+ D+E+ EK  ++ +HSEKLA+AFGL+    G  IR+VKN+R+C
Sbjct: 644 YLKMIEEGYVPDMSFVLHDVEKSEKIKMLNHHSEKLAIAFGLLFIPDGLQIRVVKNLRVC 703

Query: 472 SDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            DCH+A K +S++ +R+I +RD   +H F+DG CSC ++W
Sbjct: 704 GDCHNATKYISRITQREILVRDAVRFHLFKDGVCSCGDFW 743



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 159/366 (43%), Gaps = 70/366 (19%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           + F+ N+LI  Y   G +++AR VFD     ++ SWN++++ Y + G + +  ++FD MP
Sbjct: 39  ETFLYNNLINTYGKLGDLKNARNVFDHIPQPNLFSWNTLLSAYSKLGYLQDMQRVFDSMP 98

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE 129
             + VSWNS+L G    G + ++ RV+N M K   V+                       
Sbjct: 99  NHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNL---------------------- 136

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
                   N     ++L   +  G +D G  ++  I K   +    + + L+DMYAK G 
Sbjct: 137 --------NRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGF 188

Query: 190 IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
           I+ A ++F    +K++  Y + I GL      +EA +LF+NM  K    DSIS+  +++ 
Sbjct: 189 INDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEK----DSISWTTIITG 244

Query: 250 CSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNV 309
            +  G  ++    F  M  + G         CM                        D  
Sbjct: 245 LTQNGLFKEAVDKFKEM-GIEGF--------CM------------------------DQF 271

Query: 310 IWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYI--LLSNIYVETLKGENAEEVRKT 367
            +G++L AC      + G++I   +I +D   D  ++   L ++Y +    + AE V + 
Sbjct: 272 TFGSVLTACGGFLALDEGKQIHAYIIRTDY-QDNIFVGSALLDMYCKCRNVKYAEAVFRK 330

Query: 368 MRKRKI 373
           MR + +
Sbjct: 331 MRHKNV 336


>gi|242094040|ref|XP_002437510.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
 gi|241915733|gb|EER88877.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
          Length = 653

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 191/468 (40%), Positives = 282/468 (60%), Gaps = 2/468 (0%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           NS+I  YV  G++    K+ D+M  ++ +SW SI+    R   +  A  VF   P + +V
Sbjct: 186 NSLIGAYVACGDVGAARKVLDEMVVKDVISWTSIVAAYSRSRDMGSAEEVFALCPVKDMV 245

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           +W  +++G+AQN  P +AL  F +M    +  +   L   +SACAQLGA+    W+    
Sbjct: 246 AWTAMVTGYAQNAMPVKALEAFEQMAGAGMPIDEVSLTGAISACAQLGAVRRAVWIQEIA 305

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
            +  +  + ++ + L+DMYAKCG ID A +VF    +K+V  Y+S I GLA +G + +A 
Sbjct: 306 DRSGLGRNVVVGSGLVDMYAKCGLIDEACRVFEGMQEKNVYTYSSMIVGLASHGRANDAI 365

Query: 226 ELFENMKSKG-ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVD 284
            LF +M  +  + P+ +++I VL+ACSH G V++G YYF  M D +GI P  DHY CMVD
Sbjct: 366 ALFNDMVRRADVEPNHVTFIGVLTACSHAGMVKEGRYYFAQMKDRYGILPSADHYTCMVD 425

Query: 285 LLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGR 344
           LLGRAGL+ EA + + SM ++P   +WG LLGACR+H N ++ +     L + +    G 
Sbjct: 426 LLGRAGLVIEALDLVKSMTVEPHGGVWGALLGACRIHGNTKVAKVAAQHLFKLEPEGIGN 485

Query: 345 YILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE-LDGVVHEFLAGDRSHEKTQE 403
           Y+LLSN      + +   +VRK MR R +K+ P  S  E  DG+VH+F AGD +H    E
Sbjct: 486 YVLLSNTLASAGEWDEVSKVRKLMRIRGLKKDPAVSSFEGRDGLVHQFFAGDNTHPWMHE 545

Query: 404 IYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIR 463
           I +   E+  ++K  GY     SV++++ +EEKE ++  HSEKLAL+FGL+  +  S IR
Sbjct: 546 IKKTLLELRARLKLAGYVPVLSSVVYNVSDEEKERLLMGHSEKLALSFGLLTLESRSSIR 605

Query: 464 IVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           IVKN+RIC DCH  ++LVSKV   +I +RD   +HHF DG CSC  +W
Sbjct: 606 IVKNLRICEDCHLFIRLVSKVEPIEIIVRDNMRFHHFRDGECSCGGFW 653



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 145/355 (40%), Gaps = 108/355 (30%)

Query: 12  FVKNSLIQFYSVCGRVRDARWVFDE------------------SDDL------------- 40
           FV+NSLI  Y  CG V  AR V DE                  S D+             
Sbjct: 183 FVENSLIGAYVACGDVGAARKVLDEMVVKDVISWTSIVAAYSRSRDMGSAEEVFALCPVK 242

Query: 41  DVVSWNSMINGYVRNGEILEGLKLFDKM-------------------------------- 68
           D+V+W +M+ GY +N   ++ L+ F++M                                
Sbjct: 243 DMVAWTAMVTGYAQNAMPVKALEAFEQMAGAGMPIDEVSLTGAISACAQLGAVRRAVWIQ 302

Query: 69  --PQRNDVSWNSILG-GLV----RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
               R+ +  N ++G GLV    + G +D+ACRVF  M ++++ ++  +I G A +GR  
Sbjct: 303 EIADRSGLGRNVVVGSGLVDMYAKCGLIDEACRVFEGMQEKNVYTYSSMIVGLASHGRAN 362

Query: 122 EALALFREM-QSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
           +A+ALF +M +  D+EPN    + +L+AC+  G +  G + ++ ++              
Sbjct: 363 DAIALFNDMVRRADVEPNHVTFIGVLTACSHAGMVKEGRYYFAQMK-------------- 408

Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
            D Y    S D                YT  +  L   G  IEA +L   +KS  + P  
Sbjct: 409 -DRYGILPSAD---------------HYTCMVDLLGRAGLVIEALDL---VKSMTVEPHG 449

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE-LDHYACMVDLLGRAGLLEE 294
             + A+L AC   G  +        +F    ++PE + +Y  + + L  AG  +E
Sbjct: 450 GVWGALLGACRIHGNTKVAKVAAQHLFK---LEPEGIGNYVLLSNTLASAGEWDE 501



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 74/156 (47%), Gaps = 13/156 (8%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           ++    +V V + L+  Y+ CG + +A  VF+   + +V +++SMI G   +G   + + 
Sbjct: 307 RSGLGRNVVVGSGLVDMYAKCGLIDEACRVFEGMQEKNVYTYSSMIVGLASHGRANDAIA 366

Query: 64  LFDKMPQRNDVSWN-----SILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLISG 113
           LF+ M +R DV  N      +L      G V +    F QM  R     S   +  ++  
Sbjct: 367 LFNDMVRRADVEPNHVTFIGVLTACSHAGMVKEGRYYFAQMKDRYGILPSADHYTCMVDL 426

Query: 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
             + G   EAL L   ++S+ +EP+  +  +LL AC
Sbjct: 427 LGRAGLVIEALDL---VKSMTVEPHGGVWGALLGAC 459


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/509 (38%), Positives = 289/509 (56%), Gaps = 27/509 (5%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           V++    DVFV N+L+  Y+ C  VR+A+ VFD     +V SWN ++  Y  N E  +GL
Sbjct: 471 VRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGL 530

Query: 63  KLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKE 122
            +F +M  R++V                          K   ++W V+I G  +N R +E
Sbjct: 531 YMFSQM-NRDEV--------------------------KADEITWSVVIGGCVKNSRIEE 563

Query: 123 ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182
           A+ +FR+MQ++  +P+   + S+L AC+    L  G  ++ Y+ +     D     AL+D
Sbjct: 564 AMEIFRKMQTMGFKPDETTIYSILRACSLSECLRMGKEIHCYVFRHWKDWDLARTNALVD 623

Query: 183 MYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSIS 242
           MYAKCG + L+  VF     KDV ++ + IF   M+G+  EA  LFE M    + PDS +
Sbjct: 624 MYAKCGGLSLSRNVFDMMPIKDVFSWNTMIFANGMHGNGKEALSLFEKMLLSMVKPDSAT 683

Query: 243 YIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM 302
           +  VLSACSH   VE+G   F+SM   H ++PE +HY C+VD+  RAG LEEA  FI  M
Sbjct: 684 FTCVLSACSHSMLVEEGVQIFNSMSRDHLVEPEAEHYTCVVDIYSRAGCLEEAYGFIQRM 743

Query: 303 PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAE 362
           PM+P  + W   L  CRV++N E+ +     L E D N    Y+ L NI V       A 
Sbjct: 744 PMEPTAIAWKAFLAGCRVYKNVELAKISAKKLFEIDPNGSANYVTLFNILVTAKLWSEAS 803

Query: 363 EVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNV 422
           ++RK M++R I + PGCS   +   VH F+AGD+S+ ++ +IY F +E+  KIK  GY  
Sbjct: 804 KIRKLMKERGITKTPGCSWFHVGNRVHTFVAGDKSNMESDKIYNFLDELFAKIKAAGYKP 863

Query: 423 ETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVS 482
           +T  V+ DI++EEK   +  HSEKLA+AFG++     S IR+ KN+RIC DCH+A+K +S
Sbjct: 864 DTDYVLHDIDQEEKAESLCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMS 923

Query: 483 KVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            V    I +RD   +HHF++G+CSC ++W
Sbjct: 924 NVVGVTIVVRDSLRFHHFKNGNCSCKDFW 952



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 109/417 (26%), Positives = 184/417 (44%), Gaps = 57/417 (13%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VV++    DVFV ++ + FY+ C  VR+A+ VFD     DVV+WNS+ + YV  G   +G
Sbjct: 167 VVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKG 226

Query: 62  LKLFDKM------PQRNDVSW--------------NSILGGLVRFGSVDD---------- 91
           L +F +M      P    VS                +I G  ++ G V++          
Sbjct: 227 LNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNL 286

Query: 92  ---------ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
                    A  VF+ MP R++++W  L S +   G P++ L +FREM    ++P+   +
Sbjct: 287 YESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAM 346

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S+L AC+QL  L  G  ++ +  K  +  D  +C AL+++YA C  +  A  VF     
Sbjct: 347 SSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPH 406

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL-----GWVE 257
           ++V  + S        G   +   +F  M   G+ PD ++ +++L ACS L     G V 
Sbjct: 407 RNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVI 466

Query: 258 KGFYYFHSMFDVHGIKPELDHYAC--MVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
            GF   H M +        D + C  ++ L  +   + EA+     +P + +   W  +L
Sbjct: 467 HGFAVRHGMVE--------DVFVCNALLSLYAKCVCVREAQVVFDLIPHR-EVASWNGIL 517

Query: 316 GACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRK 372
            A   ++  E G  + + +   +   D   I  S +    +K    EE  +  RK +
Sbjct: 518 TAYFTNKEYEKGLYMFSQMNRDEVKAD--EITWSVVIGGCVKNSRIEEAMEIFRKMQ 572



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 104/397 (26%), Positives = 169/397 (42%), Gaps = 76/397 (19%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +K+    +VFV N+L+  Y  C  VR+A+ VFD     +V++WNS+ + YV  G   +GL
Sbjct: 269 LKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGL 328

Query: 63  KLFDKM-------------------PQRNDV-SWNSILGGLVRFGSVDD----------- 91
            +F +M                    Q  D+ S  +I G  V+ G V+D           
Sbjct: 329 NVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLY 388

Query: 92  --------ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
                   A  VF+ MP R++V+W  L S +   G P++ L +FREM    ++P+   ++
Sbjct: 389 ANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTML 448

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           S+L AC+ L  L  G  ++ +  +  +  D  +C AL+ +YAKC  +  A  VF     +
Sbjct: 449 SILHACSDLQDLKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHR 508

Query: 204 DVSAYTS-----------------------------------AIFGLAMNGHSIEAFELF 228
           +V+++                                      I G   N    EA E+F
Sbjct: 509 EVASWNGILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIF 568

Query: 229 ENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGR 288
             M++ G  PD  +  ++L ACS    +  G    H     H    +L     +VD+  +
Sbjct: 569 RKMQTMGFKPDETTIYSILRACSLSECLRMG-KEIHCYVFRHWKDWDLARTNALVDMYAK 627

Query: 289 AGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAE 325
            G L  + N    MP+K D   W T++ A  +H N +
Sbjct: 628 CGGLSLSRNVFDMMPIK-DVFSWNTMIFANGMHGNGK 663



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 97/351 (27%), Positives = 156/351 (44%), Gaps = 42/351 (11%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DV + N+ I  Y  C  V  AR VFD+    DVV+WNS+   YV  G   +GL +F KM 
Sbjct: 74  DVSIGNAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMG 133

Query: 70  ----QRNDVSWNSILGG----------------LVRFGSVDD------------------ 91
               + N ++ +SIL G                +VR G V+D                  
Sbjct: 134 LNKVKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVR 193

Query: 92  -ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
            A  VF+ MP R +V+W  L S +   G P++ L +FREM    ++P+   +  +LSAC+
Sbjct: 194 EAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACS 253

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
            L  L  G  ++ +  K  +  +  +  AL+++Y  C  +  A  VF     ++V  + S
Sbjct: 254 DLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNS 313

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
                   G   +   +F  M   G+ PD ++  ++L ACS L  ++ G    H     H
Sbjct: 314 LASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSG-KTIHGFAVKH 372

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           G+  ++     +V+L      + EA+     MP +  NV+    L +C V+
Sbjct: 373 GMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHR--NVVTWNSLSSCYVN 421



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/198 (20%), Positives = 82/198 (41%), Gaps = 2/198 (1%)

Query: 117 NGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSIL 176
           +G P EA+ ++   ++  ++P+  + +++  ACA           +    +  +  D  +
Sbjct: 18  HGLPNEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSI 77

Query: 177 CAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGI 236
             A I  Y KC  ++ A +VF     +DV  + S        G   +   +F  M    +
Sbjct: 78  GNAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKV 137

Query: 237 SPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAE 296
             + ++  ++L  CS L  ++ G    H     HG+  ++   +  V+   +   + EA+
Sbjct: 138 KANPLTVSSILPGCSDLQDLKSG-KEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQ 196

Query: 297 NFIASMPMKPDNVIWGTL 314
                MP + D V W +L
Sbjct: 197 TVFDLMPHR-DVVTWNSL 213


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/549 (36%), Positives = 311/549 (56%), Gaps = 39/549 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRN------ 55
            VK     D+ + N+L+  Y  C  V  +  VFD     D VSW ++I  Y ++      
Sbjct: 391 AVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEA 450

Query: 56  -------------------GEILEGLKLFDKMPQRNDVSWNSILGGLVRF---------- 86
                              G ILE       +     V   +I  GL+            
Sbjct: 451 IGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGLLDLILKNRIIDIY 510

Query: 87  ---GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
              G V  A  +F  + K+ +V+W  +++ FA+NG   EA+ALF +M +  ++P+S  LV
Sbjct: 511 GECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVALV 570

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
            +L A A L +L  G  ++ ++ +    ++  + ++L+DMY+ CGS++ A++VF     K
Sbjct: 571 GILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNYALKVFDEAKCK 630

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           DV  +T+ I    M+GH  +A  +F+ M   G+SPD +S++A+L ACSH   V++G +Y 
Sbjct: 631 DVVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLYACSHSKLVDEGKFYL 690

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
             M   + ++P  +HYAC+VDLLGR+G  EEA  FI SMP++P +V+W  LLGACR+H+N
Sbjct: 691 DMMVSKYKLQPWQEHYACVVDLLGRSGQTEEAYKFIKSMPLEPKSVVWCALLGACRIHKN 750

Query: 324 AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE 383
            E+     + L+E + ++ G Y+L+SN++ E  K  N +E+R  M ++ +++ P CS IE
Sbjct: 751 HELAMIATDKLLELEPDNPGNYVLVSNVFAEMGKWNNVKEIRTKMTEQGLRKDPACSWIE 810

Query: 384 LDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRS-VMFDIEEEEKETVIGY 442
           +   VH F A D SH  +Q I+    EI +K++  G  VE  S V+ D+ EEEK  ++  
Sbjct: 811 IGNTVHTFTARDHSHRDSQAIHLKLAEITEKLRREGQYVEDTSFVLHDVSEEEKIDLLHR 870

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSE+LA++FGLI T  G+ +RI KN+R+C DCH   KLVSK+F+R+I +RD   +HHF  
Sbjct: 871 HSERLAISFGLISTASGTPLRIAKNLRVCGDCHEFTKLVSKLFEREIVVRDANRFHHFSG 930

Query: 503 GSCSCLEYW 511
           G+CSC ++W
Sbjct: 931 GTCSCGDFW 939



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 114/406 (28%), Positives = 174/406 (42%), Gaps = 71/406 (17%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFD-ESDDLDVVSWNSMINGYVRNGEIL 59
           + VK+       V N+L+  Y+ CG +  A  VF+   D  DV SWNS I+G V+NG  L
Sbjct: 188 LAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFL 247

Query: 60  EGLKLFDKM----------------------PQRN----------------DVSWNSILG 81
           E L LF +M                       Q N                ++  N++L 
Sbjct: 248 EALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFNIQCNALLV 307

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              R G VD A RVF ++  +  +SW  ++S + QN    EA+  F EM      P+ A 
Sbjct: 308 MYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHAC 367

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           +VSLLSA   LG L  G  V++Y  K+ +  D  +   L+DMY KC S++ + +VF    
Sbjct: 368 IVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMR 427

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVE--KG 259
            KD  ++T+ I   A +    EA   F   + +GI  D +   ++L ACS L  +   K 
Sbjct: 428 IKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQ 487

Query: 260 FYYF------------HSMFDVHG---------------IKPELDHYACMVDLLGRAGLL 292
            + +            + + D++G                K ++  +  MV+     GLL
Sbjct: 488 VHSYAIRNGLLDLILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLL 547

Query: 293 EEAENFIASM---PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLI 335
            EA      M    ++PD+V    +LGA     +   G+ I   LI
Sbjct: 548 HEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLI 593



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 102/351 (29%), Positives = 157/351 (44%), Gaps = 48/351 (13%)

Query: 12  FVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP-- 69
           F+   L+  Y  CGR+ DA  +FD      V SWN++I   + +G   E + ++  M   
Sbjct: 94  FLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRAS 153

Query: 70  -----------------------------------------QRNDVSWNSILGGLVRFGS 88
                                                     R+ +  N+++G   + G 
Sbjct: 154 EPVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGL 213

Query: 89  VDDACRVFNQM-PKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLS 147
           +D A RVF  M   R + SW   ISG  QNG   EAL LFR MQS     NS   V +L 
Sbjct: 214 LDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQ 273

Query: 148 ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSA 207
            CA+L  L++G  +++ + K C    +I C AL+ MYA+CG +D A++VF   GDKD  +
Sbjct: 274 VCAELAQLNHGRELHAALLK-CGTEFNIQCNALLVMYARCGWVDSALRVFREIGDKDYIS 332

Query: 208 YTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMF 267
           + S +     N    EA + F  M   G +PD    +++LSA  HLG +  G    H+  
Sbjct: 333 WNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLING-REVHAYA 391

Query: 268 DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
               +  +L     ++D+  +   +E +      M +K D+V W T++ AC
Sbjct: 392 VKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIK-DHVSWTTII-AC 440


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/549 (36%), Positives = 307/549 (55%), Gaps = 39/549 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K+ F ++V+V + LI  Y+  G +  AR +     + DVVSW +MI GY ++    E 
Sbjct: 441 VIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEA 500

Query: 62  LKLFDKMPQRN--------------------------------------DVS-WNSILGG 82
           LKLF +M  +                                       D+S  N+++  
Sbjct: 501 LKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVSL 560

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             R G   DA   F ++  +  +SW  LISGFAQ+G  +EAL +F +M    +E N    
Sbjct: 561 YARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTF 620

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S +SA A    +  G  +++ + K     ++     LI +Y+KCGSI+ A + F    +
Sbjct: 621 GSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPE 680

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           K+V ++ + I G + +G+  EA  LFE MK  G+ P+ ++++ VLSACSH+G V +G  Y
Sbjct: 681 KNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSY 740

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F SM   HG+ P+ +HY C+VDLLGRA LL  A  FI  MP++PD +IW TLL AC VH+
Sbjct: 741 FRSMSKEHGLVPKPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSACTVHK 800

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           N E+G+     L+E +      Y+LLSN+Y  + K +  +  R+ M+ R +K+ PG S I
Sbjct: 801 NIEIGEFAARHLLELEPEDSATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWI 860

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E+   +H F  GDR H   ++IY++ +++ ++    GY  +  +++ D+E+E+K+     
Sbjct: 861 EVKNSIHAFFVGDRLHPLAEQIYEYIDDLNERAGEIGYVQDRYNLLNDVEQEQKDPTAYI 920

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSEKLA+AFGL+       IR++KN+R+C+DCH+ +K VSK+  R I +RD   +HHFE 
Sbjct: 921 HSEKLAVAFGLLSLTNTMPIRVIKNLRVCNDCHNWIKFVSKISNRAIVVRDAYRFHHFEG 980

Query: 503 GSCSCLEYW 511
           G CSC +YW
Sbjct: 981 GVCSCKDYW 989



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 162/353 (45%), Gaps = 41/353 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +VK   + + FV N+L+  YS  G +  A  +F +    D +S+NS+I+G  + G     
Sbjct: 239 IVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRA 298

Query: 62  LKLFDKMP----QRNDVSWNSILGGLVRFGS----------------------------- 88
           L+LF+KM     + + V+  S+L      G+                             
Sbjct: 299 LQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDL 358

Query: 89  ------VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
                 ++ A   F      ++V W V++  + Q G   E+  +F +MQ   L PN    
Sbjct: 359 YVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTY 418

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S+L  C  LGALD G  +++ + K   + +  +C+ LIDMYAK G +D A  +     +
Sbjct: 419 PSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLRE 478

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           +DV ++T+ I G   +    EA +LF+ M+++GI  D+I + + +SAC+ +  + +G   
Sbjct: 479 EDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQG-QQ 537

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
            H+   + G   +L     +V L  R G  ++A      +  K DN+ W  L+
Sbjct: 538 IHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAK-DNISWNALI 589



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 177/382 (46%), Gaps = 49/382 (12%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++ + F     V N LI  YS  G V  A+ VF+     D VSW +MI+G  +NG   E 
Sbjct: 138 IIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEA 197

Query: 62  LKLFDKMPQRN------------------------------DVSW---------NSILGG 82
           + LF +M +                                 V W         N+++  
Sbjct: 198 ILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTL 257

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             R+G++  A ++F++M +R  +S+  LISG AQ G    AL LF +MQ   ++P+   +
Sbjct: 258 YSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTV 317

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            SLLSACA +GA   G  ++SY+ K  +  D I+  +L+D+Y KC  I+ A + F +   
Sbjct: 318 ASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTET 377

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           ++V  +   +      G+  E++ +F  M+ +G+ P+  +Y ++L  C+ LG ++ G   
Sbjct: 378 ENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLG-EQ 436

Query: 263 FHSMFDVHGIKPELDHYAC--MVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
            H+     G   + + Y C  ++D+  + G L+ A   +  +  + D V W  ++     
Sbjct: 437 IHTQVIKSGF--QFNVYVCSVLIDMYAKHGELDTARGILQRL-REEDVVSWTAMIAGYTQ 493

Query: 321 H----RNAEMGQRIGNMLIESD 338
           H       ++ Q + N  I SD
Sbjct: 494 HDLFAEALKLFQEMENQGIRSD 515



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 99/356 (27%), Positives = 165/356 (46%), Gaps = 42/356 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           + K+ F  +  + + LI  Y   G V +A  +FD+    +V  WN +I+G +      + 
Sbjct: 36  IFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQV 95

Query: 62  LKLFDKMPQRN----DVSWNSIL----GGLVRF--------------------------- 86
           L LF  M   N    + ++ S+L    GG   F                           
Sbjct: 96  LGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLID 155

Query: 87  -----GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
                G VD A  VF ++  +  VSWV +ISG +QNGR  EA+ LF +M    + P   +
Sbjct: 156 LYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYV 215

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
             S+LSAC ++     G  ++ +I K  +  ++ +C AL+ +Y++ G++  A Q+F    
Sbjct: 216 FSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMH 275

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
            +D  +Y S I GLA  G S  A +LFE M+   + PD ++  ++LSAC+ +G   KG  
Sbjct: 276 RRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKG-K 334

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
             HS     G+  +L     ++DL  +   +E A  +  +   + + V+W  +L A
Sbjct: 335 QLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETE-NVVLWNVMLVA 389



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 159/359 (44%), Gaps = 41/359 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K   + D+ ++ SL+  Y  C  +  A   F  ++  +VV WN M+  Y + G + E 
Sbjct: 340 VIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSES 399

Query: 62  LKLFDKMP----QRNDVSWNSIL------GGL---------------------------- 83
             +F +M       N  ++ SIL      G L                            
Sbjct: 400 YWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDM 459

Query: 84  -VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G +D A  +  ++ +  +VSW  +I+G+ Q+    EAL LF+EM++  +  ++   
Sbjct: 460 YAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGF 519

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S +SACA + AL+ G  +++         D  +  AL+ +YA+CG    A   F     
Sbjct: 520 SSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDA 579

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           KD  ++ + I G A +GH  EA ++F  M   G+  +  ++ + +SA ++   +++G   
Sbjct: 580 KDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQG-KQ 638

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            H+M    G   E +    ++ L  + G +E+A+     MP K + V W  ++     H
Sbjct: 639 IHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEK-NVVSWNAMITGYSQH 696



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 91/376 (24%), Positives = 154/376 (40%), Gaps = 47/376 (12%)

Query: 41  DVVSWNSMINGYVRNGEILEGLKLFDKMPQRN----DVSWNSILGGLVRFGSVDDACRVF 96
           +V ++  +  G   +G +L+  KL  ++ +      DV  + ++   +  G VD+A ++F
Sbjct: 9   NVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLF 68

Query: 97  NQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA-L 155
           + +P  ++  W  +ISG        + L LF  M + ++ P+ +   S+L AC+   A  
Sbjct: 69  DDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPF 128

Query: 156 DYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGL 215
                +++ I         ++C  LID+Y+K G +DLA  VF     KD  ++ + I GL
Sbjct: 129 QVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGL 188

Query: 216 AMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE 275
           + NG   EA  LF  M    + P    + +VLSAC+ +   + G    H      G+  E
Sbjct: 189 SQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLG-EQLHGFIVKWGLSSE 247

Query: 276 LDHYACMVDLLGRAGLLEEAENFIASMP-------------------------------- 303
                 +V L  R G L  AE   + M                                 
Sbjct: 248 TFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQL 307

Query: 304 --MKPDNVIWGTLLGACRV----HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLK 357
             MKPD V   +LL AC      ++  ++   +  M + SD   +G    L ++YV+   
Sbjct: 308 DCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGS---LLDLYVKCFD 364

Query: 358 GENAEEVRKTMRKRKI 373
            E A E   T     +
Sbjct: 365 IETAHEYFLTTETENV 380



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 96/203 (47%), Gaps = 19/203 (9%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           M++K  +  +    N LI  YS CG + DA+  F E  + +VVSWN+MI GY ++G   E
Sbjct: 642 MMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSE 701

Query: 61  GLKLFDKMPQ----RNDVSWNSILGGLVRFGSVDDACRVFNQM-------PKRSLVSWVV 109
            + LF++M Q     N V++  +L      G V++    F  M       PK      VV
Sbjct: 702 AVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKPEHYVCVV 761

Query: 110 LISGFAQNGRPKEALALFRE-MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKK 168
            + G A        L   RE ++ + +EP++ I  +LLSAC     ++ G +   ++ + 
Sbjct: 762 DLLGRA------ALLCCAREFIEEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHLLEL 815

Query: 169 CIKLDSILCAALIDMYAKCGSID 191
             + DS     L +MYA  G  D
Sbjct: 816 EPE-DSATYVLLSNMYAVSGKWD 837



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 89/209 (42%), Gaps = 15/209 (7%)

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
           M+   +  N    + L   C   G+L     +++ I K     + +L + LID+Y   G 
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60

Query: 190 IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
           +D A+++F      +VS +   I GL     + +   LF  M ++ ++PD  ++ +VL A
Sbjct: 61  VDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRA 120

Query: 250 CSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNV 309
           CS      +     H+    HG          ++DL  + G ++ A+     + +K D+V
Sbjct: 121 CSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLK-DSV 179

Query: 310 IWGTLLGA--------------CRVHRNA 324
            W  ++                C++H++A
Sbjct: 180 SWVAMISGLSQNGREDEAILLFCQMHKSA 208


>gi|298205169|emb|CBI17228.3| unnamed protein product [Vitis vinifera]
          Length = 590

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 188/434 (43%), Positives = 271/434 (62%), Gaps = 21/434 (4%)

Query: 78  SILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEP 137
           S++   V+ G +    ++F++ P+R+    ++L +G                     + P
Sbjct: 178 SLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNG---------------------VRP 216

Query: 138 NSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVF 197
           N   +VS L AC ++GAL  G  +++Y+     +L+  +  AL+DMYAKCG+I  A +VF
Sbjct: 217 NDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVF 276

Query: 198 HSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVE 257
                KD+  ++  I+G A++G   +A + F  MKS GI+PD + ++A+L+ACSH G V+
Sbjct: 277 VETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNVD 336

Query: 258 KGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
           +G  +F SM   + I+P + HY  +VDLLGRAG L+EA +FI SMP+ PD VIWG L  A
Sbjct: 337 QGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFCA 396

Query: 318 CRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAP 377
           CR H+N EM +     L++ +  H G Y+ LSN+Y    + E+ E VR  M+ R +++ P
Sbjct: 397 CRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYAAVGRWEDVERVRTLMKNRGVEKDP 456

Query: 378 GCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKE 437
           G S IE++G VH F+AGD +H + +EI    EEI    K  GY  ET  V+ +IEEEEKE
Sbjct: 457 GWSYIEVEGQVHSFVAGDHAHVRAEEISLKLEEITASAKQEGYMPETAWVLHNIEEEEKE 516

Query: 438 TVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHY 497
             +G HSEKLALAFGLI T PGS IRIVKN+R+C DCHS MK  SK+ +R+I +RD K +
Sbjct: 517 DALGSHSEKLALAFGLISTAPGSTIRIVKNLRVCGDCHSMMKYASKLSRREIILRDIKRF 576

Query: 498 HHFEDGSCSCLEYW 511
           HHF+DG+CSC +YW
Sbjct: 577 HHFKDGTCSCGDYW 590



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 109/245 (44%), Gaps = 19/245 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLD----VVSWN----------S 47
           V+K    +D FV+ SL+  Y   G +     +FDES   +    ++ WN          S
Sbjct: 164 VMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNGVRPNDLTVVS 223

Query: 48  MINGYVRNGEILEGLKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRS 103
            +    + G +  G ++ + +     Q N     +++    + G++  A RVF +   + 
Sbjct: 224 ALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKD 283

Query: 104 LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG-NWVY 162
           L++W V+I G+A +G   +AL  F +M+S  + P+  I +++L+AC+  G +D G N+  
Sbjct: 284 LLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFE 343

Query: 163 SYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSI 222
           S      I+        ++D+  + G +D A+    S           A+F       +I
Sbjct: 344 SMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFCACRAHKNI 403

Query: 223 EAFEL 227
           E  EL
Sbjct: 404 EMAEL 408



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/234 (21%), Positives = 102/234 (43%), Gaps = 23/234 (9%)

Query: 88  SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLS 147
           S+D A  +F      +L  +  LI G A+N R + +++ F  M  L + P+   L  +L 
Sbjct: 87  SLDYALSIFRCFDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLK 146

Query: 148 ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSA 207
           + A L  +  G  ++  + K  ++ DS +  +L+DMY K G +   +Q+F     ++ + 
Sbjct: 147 SVAALVDVGLGRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKA- 205

Query: 208 YTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMF 267
                          E+  L+      G+ P+ ++ ++ L AC+ +G ++ G    H+  
Sbjct: 206 ---------------ESILLW-----NGVRPNDLTVVSALLACTKIGALQVG-ERIHNYL 244

Query: 268 DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
             +G +        +VD+  + G ++ A         K D + W  ++    +H
Sbjct: 245 SSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGK-DLLTWSVMIWGWAIH 297


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 213/557 (38%), Positives = 319/557 (57%), Gaps = 46/557 (8%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDL-DVVSWNSMINGYVRNGEIL 59
           + V + F   V V N+L+ +Y   G + DA+ VF     + D VSWNSMI  Y ++ E  
Sbjct: 163 VAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGS 222

Query: 60  EGLKLFDKMPQRN-------------------DVS---------------WNSILG-GLV 84
           + L LF +M +R                    D+S                NS +G GL+
Sbjct: 223 KALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLI 282

Query: 85  RF-----GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGR-PKEALALFREMQSLDLEPN 138
                  G + D  +VF ++ +  LV W  ++SG++QN    ++AL  FR+MQ +   PN
Sbjct: 283 DLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPN 342

Query: 139 SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI-LCAALIDMYAKCGSIDLAMQVF 197
               V ++SAC+ L +   G  ++S   K  I  + I +  ALI MY+KCG++  A ++F
Sbjct: 343 DCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLF 402

Query: 198 HSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVE 257
               + +  +  S I G A +G  +E+  LF+ M  + I+P SI++I+VLSAC+H G VE
Sbjct: 403 DRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVE 462

Query: 258 KGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
           +G+ YF+ M +   I+PE +HY+CM+DLLGRAG L EAEN IA MP  P ++ W +LLGA
Sbjct: 463 EGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGA 522

Query: 318 CRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAP 377
           CR H N E+  +  N +++ + ++   Y++LSN+Y    + E    VRK MR R +K+ P
Sbjct: 523 CRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKP 582

Query: 378 GCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFD---IEEE 434
           GCS IE+   +H F+A D SH   +EIY+F EE+  K+K  GY  + R  +         
Sbjct: 583 GCSWIEVKKRIHVFVAEDSSHPMIKEIYEFLEEMSGKMKRAGYVPDVRWALVKDDGTRGG 642

Query: 435 EKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDR 494
           EKE  +G+HSEKLA+AFGLI TK G  + +VKN+RIC DCH+A+K +S +  R+I++RD 
Sbjct: 643 EKEIRLGHHSEKLAVAFGLISTKDGEPVLVVKNLRICGDCHNAIKFISAIAGREITVRDA 702

Query: 495 KHYHHFEDGSCSCLEYW 511
             +H F++G CSC +YW
Sbjct: 703 HRFHCFKEGQCSCGDYW 719



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 135/323 (41%), Gaps = 49/323 (15%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + +K+      +  N  I  YS CGR+  AR  F +  D +V S+N++I  Y +    L 
Sbjct: 33  LYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPNVFSFNAIIAAYAKESRPLI 92

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
             +LFD                               Q+P+  LVS+  LIS +A  G  
Sbjct: 93  AHQLFD-------------------------------QIPEPDLVSYNTLISAYADCGET 121

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSAC-------AQLGALDYGNWVYSYIQKKCIKLD 173
             AL LF  M+ + L+ +   L ++++AC        QL ++   +   SY+        
Sbjct: 122 APALGLFSGMREMGLDMDGFTLSAVITACCDDVGLIGQLHSVAVSSGFDSYVS------- 174

Query: 174 SILCAALIDMYAKCGSIDLAMQVFHSYGD-KDVSAYTSAIFGLAMNGHSIEAFELFENMK 232
             +  AL+  Y K G +D A +VF+  G  +D  ++ S I     +    +A  LF+ M 
Sbjct: 175 --VNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMV 232

Query: 233 SKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLL 292
            +G++ D  +  +VL+A + L  +  G   FH      G        + ++DL  + G  
Sbjct: 233 RRGLNVDMFTLASVLTAFTCLEDLSGGL-QFHGQLIKTGFHQNSHVGSGLIDLYSKCGGG 291

Query: 293 EEAENFIASMPMKPDNVIWGTLL 315
                 +     +PD V+W T++
Sbjct: 292 MSDCRKVFEEITEPDLVLWNTMV 314



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 4/122 (3%)

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           LL  C     L  G  ++S   K  I   +      I +Y+KCG +  A + F    D +
Sbjct: 14  LLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPN 73

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           V ++ + I   A     + A +LF+ +      PD +SY  ++SA +  G        F 
Sbjct: 74  VFSFNAIIAAYAKESRPLIAHQLFDQIP----EPDLVSYNTLISAYADCGETAPALGLFS 129

Query: 265 SM 266
            M
Sbjct: 130 GM 131


>gi|293334801|ref|NP_001169361.1| uncharacterized protein LOC100383228 [Zea mays]
 gi|224028917|gb|ACN33534.1| unknown [Zea mays]
          Length = 596

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/444 (43%), Positives = 273/444 (61%), Gaps = 15/444 (3%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALAL-------FRE 129
            ++L    + G V  A +VF++MP R + +W  L++G AQ   P  AL L       FRE
Sbjct: 159 TTLLDSYAKCGDVASARKVFDEMPVRDVATWNALLAGLAQGTEPNLALLLFRRLAGSFRE 218

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
           +   + EPN+  +V+ LSACAQLG L  G  V+ + +      +  +  ALIDMY+KCGS
Sbjct: 219 LPPRE-EPNAVTVVAALSACAQLGTLKDGLAVHEFARTIGAVDNVCVGNALIDMYSKCGS 277

Query: 190 IDLAMQVFHSYG--DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVL 247
           +  A++VFHS    D+ + +Y + I  L+++GH  +A +LF+ M ++ I PD I+Y+AV+
Sbjct: 278 LSRALEVFHSIKLEDRTLVSYNATIQALSIHGHGEDALKLFDEMPAR-IEPDEITYLAVM 336

Query: 248 SACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPD 307
             C+H G V+ G   F SM     + P + HY  +VDLLGRAG L EA + I SMP   D
Sbjct: 337 GGCNHAGLVDDGRRVFDSM----RVPPNMKHYGTIVDLLGRAGRLAEAYDMIMSMPFPAD 392

Query: 308 NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKT 367
            V+W TLLGA ++H N ++ +     L +   N DG Y+LLSN+Y    +  +   VR T
Sbjct: 393 IVLWQTLLGAAKMHGNVDLAELAATKLADLGSNVDGDYVLLSNVYASKSRWVDVGRVRDT 452

Query: 368 MRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSV 427
           MR   +K+ PG S  E+DGV+H+F+ GD+ H + +EIY+  +EI  +I   GY  ET +V
Sbjct: 453 MRSNDVKKVPGFSYTEIDGVMHKFINGDKEHMRWREIYRALDEIGSRICALGYEPETSNV 512

Query: 428 MFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKR 487
           + DI EEEK+  + YHSEKLA+AFGLI T PG  IR++KN+R C DCH   KL+SK + R
Sbjct: 513 LHDIGEEEKQYALSYHSEKLAIAFGLISTPPGETIRVIKNLRTCGDCHVVAKLISKAYNR 572

Query: 488 KISIRDRKHYHHFEDGSCSCLEYW 511
            I IRDR  +H FEDG CSC +YW
Sbjct: 573 VIIIRDRARFHRFEDGHCSCRDYW 596



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 87/206 (42%), Gaps = 48/206 (23%)

Query: 8   AYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGE-------ILE 60
           A DV +  +L+  Y+ CG V  AR VFDE    DV +WN+++ G  +  E          
Sbjct: 152 AADVRLMTTLLDSYAKCGDVASARKVFDEMPVRDVATWNALLAGLAQGTEPNLALLLFRR 211

Query: 61  GLKLFDKMPQRNDVSWNSILGGLV-------------------RFGSVDDAC-------- 93
               F ++P R + +  +++  L                      G+VD+ C        
Sbjct: 212 LAGSFRELPPREEPNAVTVVAALSACAQLGTLKDGLAVHEFARTIGAVDNVCVGNALIDM 271

Query: 94  -----------RVFN--QMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
                       VF+  ++  R+LVS+   I   + +G  ++AL LF EM +  +EP+  
Sbjct: 272 YSKCGSLSRALEVFHSIKLEDRTLVSYNATIQALSIHGHGEDALKLFDEMPA-RIEPDEI 330

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQ 166
             ++++  C   G +D G  V+  ++
Sbjct: 331 TYLAVMGGCNHAGLVDDGRRVFDSMR 356



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 90/221 (40%), Gaps = 43/221 (19%)

Query: 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFEL-- 227
           +  D  L   L+D YAKCG +  A +VF     +DV+ + + + GLA       A  L  
Sbjct: 151 VAADVRLMTTLLDSYAKCGDVASARKVFDEMPVRDVATWNALLAGLAQGTEPNLALLLFR 210

Query: 228 -----FENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF---------------HSMF 267
                F  +  +   P++++ +A LSAC+ LG ++ G                   +++ 
Sbjct: 211 RLAGSFRELPPRE-EPNAVTVVAALSACAQLGTLKDGLAVHEFARTIGAVDNVCVGNALI 269

Query: 268 DV--------------HGIKPE---LDHYACMVDLLGRAGLLEEAENFIASMP--MKPDN 308
           D+              H IK E   L  Y   +  L   G  E+A      MP  ++PD 
Sbjct: 270 DMYSKCGSLSRALEVFHSIKLEDRTLVSYNATIQALSIHGHGEDALKLFDEMPARIEPDE 329

Query: 309 VIWGTLLGACRVHRNAEMGQRI-GNMLIESDQNHDGRYILL 348
           + +  ++G C      + G+R+  +M +  +  H G  + L
Sbjct: 330 ITYLAVMGGCNHAGLVDDGRRVFDSMRVPPNMKHYGTIVDL 370


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 213/557 (38%), Positives = 320/557 (57%), Gaps = 46/557 (8%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDL-DVVSWNSMINGYVRNGEIL 59
           + V + F   V V N+L+ +Y   G + DA+ VF     + D VSWNSMI  Y ++ E  
Sbjct: 163 VAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGS 222

Query: 60  EGLKLFDKMPQRN-------------------DVS---------------WNSILG-GLV 84
           + L LF +M +R                    D+S                NS +G GL+
Sbjct: 223 KALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLI 282

Query: 85  RF-----GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGR-PKEALALFREMQSLDLEPN 138
                  G + D  +VF ++ +  LV W  ++SG++QN    ++AL  FR+MQ +   PN
Sbjct: 283 DLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPN 342

Query: 139 SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI-LCAALIDMYAKCGSIDLAMQVF 197
               V ++SAC+ L +   G  ++S   K  I  + I +  ALI MY+KCG++  A ++F
Sbjct: 343 DCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLF 402

Query: 198 HSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVE 257
               + +  +  S I G A +G  +E+  LF+ M  + I+P SI++I+VLSAC+H G VE
Sbjct: 403 DRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVE 462

Query: 258 KGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
           +G+ YF+ M +   I+PE +HY+CM+DLLGRAG L EAEN IA MP  P ++ W +LLGA
Sbjct: 463 EGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGA 522

Query: 318 CRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAP 377
           CR H N E+  +  N +++ + ++   Y++LSN+Y    + E    VRK MR R +K+ P
Sbjct: 523 CRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKP 582

Query: 378 GCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEE--- 434
           GCS IE+   +H F+A D SH   +EIY+F EE+  K+K  GY  + R  +   +     
Sbjct: 583 GCSWIEVKKRIHVFVAEDSSHPMIKEIYEFLEEMSGKMKRAGYVPDVRWALVKDDGTRGG 642

Query: 435 EKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDR 494
           EKE  +G+HSEKLA+AFGLI TK G  + +VKN+RIC DCH+A+K +S +  R+I++RD 
Sbjct: 643 EKEIRLGHHSEKLAVAFGLISTKDGEPVLVVKNLRICGDCHNAIKFISAIAGREITVRDA 702

Query: 495 KHYHHFEDGSCSCLEYW 511
             +H F++G CSC +YW
Sbjct: 703 HRFHCFKEGQCSCGDYW 719



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 135/323 (41%), Gaps = 49/323 (15%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + +K+      +  N  I  YS CGR+  AR  F +  D +V S+N++I  Y +    L 
Sbjct: 33  LYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPNVFSFNAIIAAYAKESRPLI 92

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
             +LFD                               Q+P+  LVS+  LIS +A  G  
Sbjct: 93  AHQLFD-------------------------------QIPEPDLVSYNTLISAYADCGET 121

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSAC-------AQLGALDYGNWVYSYIQKKCIKLD 173
             AL LF  M+ + L+ +   L ++++AC        QL ++   +   SY+        
Sbjct: 122 APALGLFSGMREMGLDMDXFTLSAVITACCDDVGLIGQLHSVAVSSGFDSYVS------- 174

Query: 174 SILCAALIDMYAKCGSIDLAMQVFHSYGD-KDVSAYTSAIFGLAMNGHSIEAFELFENMK 232
             +  AL+  Y K G +D A +VF+  G  +D  ++ S I     +    +A  LF+ M 
Sbjct: 175 --VNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMV 232

Query: 233 SKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLL 292
            +G++ D  +  +VL+A + L  +  G   FH      G        + ++DL  + G  
Sbjct: 233 RRGLNVDMFTLASVLTAFTCLEDLSGGL-QFHGQLIKTGFHQNSHVGSGLIDLYSKCGGG 291

Query: 293 EEAENFIASMPMKPDNVIWGTLL 315
                 +     +PD V+W T++
Sbjct: 292 MSDCRKVFEEITEPDLVLWNTMV 314



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 4/122 (3%)

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           LL  C     L  G  ++S   K  I   +      I +Y+KCG +  A + F    D +
Sbjct: 14  LLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPN 73

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           V ++ + I   A     + A +LF+ +      PD +SY  ++SA +  G        F 
Sbjct: 74  VFSFNAIIAAYAKESRPLIAHQLFDQIP----EPDLVSYNTLISAYADCGETAPALGLFS 129

Query: 265 SM 266
            M
Sbjct: 130 GM 131


>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
 gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 180/470 (38%), Positives = 284/470 (60%), Gaps = 4/470 (0%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N+MI+ YV+   I    K+FD+MP+R+ +SW  ++    R G+++ A  +F  +P + +V
Sbjct: 188 NTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPTKDMV 247

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           +W  +++GFAQN +P+EAL  F  M+   +  +   +   +SACAQLGA  Y +      
Sbjct: 248 AWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIA 307

Query: 166 QKKCIKLDS--ILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIE 223
           QK         ++ +ALIDMY+KCG+++ A+ VF S  +K+V  Y+S I GLA +G + E
Sbjct: 308 QKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQE 367

Query: 224 AFELFENMKSKG-ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACM 282
           A  LF  M ++  I P++++++  L ACSH G V++G   F SM+   G++P  DHY CM
Sbjct: 368 ALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTCM 427

Query: 283 VDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD 342
           VDLLGR G L+EA   I +M ++P   +WG LLGACR+H N E+ +     L E + +  
Sbjct: 428 VDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAAEHLFELEPDII 487

Query: 343 GRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS-LIELDGVVHEFLAGDRSHEKT 401
           G YILLSN+Y           VRK ++++ +K+ P  S +++ +G +H+F  G+ +H  +
Sbjct: 488 GNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGNLNHPMS 547

Query: 402 QEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSV 461
            +I    EE+V+++   GY  +  SV +D+ +  K  ++  H+EKLALAF L+ T   S 
Sbjct: 548 NKIQDKLEELVERLTVLGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSLLTTNRDST 607

Query: 462 IRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           I I+KN+R+C DCH  M+L S+V  + I +RD   +HHF  G CSC ++W
Sbjct: 608 ITIMKNLRMCLDCHKFMRLASEVTGKVIIMRDNMRFHHFRSGDCSCGDFW 657



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 113/251 (45%), Gaps = 42/251 (16%)

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           A RV   +  R+   W  +I G+A  G+  EA+A++  M+  ++ P S    +LL AC  
Sbjct: 102 ARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGT 161

Query: 152 LGALDYG-----------NWVYSYIQKKCI----KLDSILCA----------------AL 180
           +  L+ G            + + Y+    I    K +SI CA                 L
Sbjct: 162 MKDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTEL 221

Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           I  YA+ G+++ A ++F S   KD+ A+T+ + G A N    EA E F+ M+  GI  D 
Sbjct: 222 IAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADE 281

Query: 241 ISYIAVLSACSHLG---WVEKGFYYFHSMFDVHGIKPELDHY---ACMVDLLGRAGLLEE 294
           ++    +SAC+ LG   + ++       +    G  P  DH    + ++D+  + G +EE
Sbjct: 282 VTVAGYISACAQLGASKYADRAV----QIAQKSGYSPS-DHVVIGSALIDMYSKCGNVEE 336

Query: 295 AENFIASMPMK 305
           A N   SM  K
Sbjct: 337 AVNVFMSMNNK 347



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 120/288 (41%), Gaps = 56/288 (19%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM- 68
           DV     LI  Y+  G +  A  +F+     D+V+W +M+ G+ +N +  E L+ FD+M 
Sbjct: 214 DVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRME 273

Query: 69  ----------------------------------------PQRNDVSWNSILGGLVRFGS 88
                                                   P  + V  ++++    + G+
Sbjct: 274 KSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGN 333

Query: 89  VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM-QSLDLEPNSAILVSLLS 147
           V++A  VF  M  +++ ++  +I G A +GR +EAL LF  M    +++PN+   V  L 
Sbjct: 334 VEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALM 393

Query: 148 ACAQLGALDYGNWVY-SYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
           AC+  G +D G  V+ S  Q   ++        ++D+  + G +  A+++  +   +   
Sbjct: 394 ACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHG 453

Query: 207 AYTSAIFGLAMNGHS------IEAFELFENMKSKGISPDSISYIAVLS 248
               A+ G A   H+      I A  LFE      + PD I    +LS
Sbjct: 454 GVWGALLG-ACRIHNNPEIAEIAAEHLFE------LEPDIIGNYILLS 494


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/512 (38%), Positives = 290/512 (56%), Gaps = 33/512 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K     D FV ++LI  Y  C    +   VF+E D++DV + N+++ G          
Sbjct: 236 VIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTG---------- 285

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSL--VSWVVLISGFAQNGR 119
                                L R G VD+A  VF Q     L  VSW  +I+  +QNG+
Sbjct: 286 ---------------------LSRNGLVDNALEVFKQFKGMDLNVVSWTSMIASCSQNGK 324

Query: 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
             EAL LFREMQ   ++PNS  +  LL AC  + AL +G   + +  +  I  D  + +A
Sbjct: 325 DMEALELFREMQIEGVKPNSVTIPCLLPACGNIAALLHGKAAHCFSLRNGIFNDVYVGSA 384

Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
           LIDMYAKCG +  +   F    ++++ ++ S + G AM+G + EA  +FE M+  G  PD
Sbjct: 385 LIDMYAKCGRMLASRLCFDMMPNRNLVSWNSLMAGYAMHGKTFEAINIFELMQRCGQKPD 444

Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI 299
            +S+  VLSAC+  G  E+G++YF SM   HG++  ++HY+CMV LLGR+G LEEA   I
Sbjct: 445 HVSFTCVLSACTQGGLTEEGWFYFDSMSRNHGVEARMEHYSCMVTLLGRSGRLEEAYAMI 504

Query: 300 ASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGE 359
             MP +PD+ +WG LL +CRVH   ++G+     + E +  + G YILLSNIY       
Sbjct: 505 KQMPFEPDSCVWGALLSSCRVHNRVDLGEIAAKRVFELEPRNPGNYILLSNIYASKAMWV 564

Query: 360 NAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYG 419
             + VR  MR R +K+ PG S IE+   VH  LAGD SH +  +I +   ++  ++K  G
Sbjct: 565 EVDMVRDMMRSRGLKKNPGYSWIEIKNKVHMLLAGDSSHPQMPQIIEKLAKLTVEMKKSG 624

Query: 420 YNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMK 479
           Y   T  V+ D+EE++KE ++  HSEKLA+  GL+ TKPG  ++++KN+RIC DCH+ +K
Sbjct: 625 YVPHTDFVLQDVEEQDKEQILCGHSEKLAVVLGLLNTKPGFPLQVIKNLRICRDCHAVIK 684

Query: 480 LVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            +S   KR+I +RD   +H F+ G CSC +YW
Sbjct: 685 FISDFEKREIFVRDTNRFHQFKGGVCSCGDYW 716



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 158/337 (46%), Gaps = 46/337 (13%)

Query: 40  LDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQM 99
           LD V  +S+++ YV+   + +   +FDK+PQ   V+ ++++    R G V +   +F Q 
Sbjct: 107 LDSVVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQT 166

Query: 100 P----KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGAL 155
                + +LVSW  +ISGF ++G   +A+ +F+ M    L+P+   + S+L A   L   
Sbjct: 167 RDLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMP 226

Query: 156 DYGNWVYSYIQKKCIKLDSILCAALIDMYAKC---------------------------- 187
             G  ++ Y+ K+ +  D  + +ALIDMY KC                            
Sbjct: 227 LMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGL 286

Query: 188 ---GSIDLAMQVFHSYG--DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSIS 242
              G +D A++VF  +   D +V ++TS I   + NG  +EA ELF  M+ +G+ P+S++
Sbjct: 287 SRNGLVDNALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVT 346

Query: 243 YIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM 302
              +L AC ++  +  G    H     +GI  ++   + ++D+  + G +  +      M
Sbjct: 347 IPCLLPACGNIAALLHG-KAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMM 405

Query: 303 PMKPDNVIWGTLLGACRVHRNA-------EMGQRIGN 332
           P + + V W +L+    +H          E+ QR G 
Sbjct: 406 PNR-NLVSWNSLMAGYAMHGKTFEAINIFELMQRCGQ 441



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 70/150 (46%), Gaps = 1/150 (0%)

Query: 126 LFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYA 185
           +F  M +  + P+S +L +++  CA L AL  G  ++ +     + LDS++ ++L+ MY 
Sbjct: 61  VFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCFALVSGLGLDSVVLSSLLHMYV 120

Query: 186 KCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIA 245
           +   +  A  VF       V   ++ I   A  G   E  ELF   +  G+  + +S+  
Sbjct: 121 QFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVSWNG 180

Query: 246 VLSACSHLGWVEKGFYYFHSMFDVHGIKPE 275
           ++S  +  G        F +M  + G+KP+
Sbjct: 181 MISGFNRSGSYLDAVLMFQNM-HLEGLKPD 209


>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
          Length = 655

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 203/523 (38%), Positives = 304/523 (58%), Gaps = 42/523 (8%)

Query: 25  GRVRDARWVFDESDDLDVVSWNSMINGYVRN-GEILEGLKLFDKMPQRNDVSWNSILGGL 83
           G +  AR +F +    ++ SWNSMI G  ++     E + LF KM +R   + N+     
Sbjct: 107 GDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAF 166

Query: 84  VR-----------------------FGS-----------------VDDACRVFNQMPKRS 103
           V                        FGS                 +  A +VF+++  R+
Sbjct: 167 VLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRN 226

Query: 104 LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYS 163
           LV+W  +ISG+A+ G   EAL LFR+MQ   + P+   +VS++SACA  GALD G WV++
Sbjct: 227 LVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHA 286

Query: 164 YIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIE 223
           YI K+ I+ D  L  AL++MYAKCG I+ A +VF +   KD  A++S I GLA+NG + +
Sbjct: 287 YINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAED 346

Query: 224 AFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMV 283
           A E F  M+   + P+ +++I VLSAC+H G V +G  Y+ SM +  GI P ++ Y CMV
Sbjct: 347 ALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSMLEF-GIVPSMELYGCMV 405

Query: 284 DLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDG 343
           DLL RA L+E+A   + +MP+ P+ VIW TLL  C+  +N +  + +   L+E + ++  
Sbjct: 406 DLLCRASLVEDACTLVETMPISPNPVIWRTLLVGCKKSKNLDKSEVVAQRLLELEPHNAE 465

Query: 344 RYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQE 403
            YILLSN+Y    + E   +VRK M+   IK  PGCS IE+DG+VHEF+ GD SH +  E
Sbjct: 466 NYILLSNLYASMSQWEKMSQVRKKMKGMGIKAVPGCSSIEVDGLVHEFVMGDWSHPEAME 525

Query: 404 IYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIR 463
           + +   +I K++   G+      V+ ++ +EEKE  +  HSE+LA+A+GL+ TK    IR
Sbjct: 526 VREILRDISKRVHAVGHQPGISDVLHNVVDEEKENALCEHSERLAIAYGLLKTKTPMAIR 585

Query: 464 IVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCS 506
           IVKN+R+C DCH   K++S  ++R+I +RDR  +H F +GSCS
Sbjct: 586 IVKNLRVCGDCHEVTKIISAEYRREIIVRDRVRFHKFVNGSCS 628



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 136/246 (55%), Gaps = 4/246 (1%)

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP-KEALALFREMQSLDLE-PNS 139
            L  +G +D A ++F+Q+ + ++ SW  +I G +Q+  P KE + LFR+M       PN+
Sbjct: 102 ALSPYGDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNT 161

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
             +  +L AC+ + AL+ G  V++ + K        +  AL++ YAKC  I LA +VF  
Sbjct: 162 FTMAFVLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDE 221

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
             D+++ A+++ I G A  G   EA  LF +M+  G+ PD ++ ++V+SAC+  G ++ G
Sbjct: 222 ITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTG 281

Query: 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACR 319
             + H+  +   I+ +L+    +V++  + G +E A+    +MP+K D   W +++    
Sbjct: 282 -KWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVK-DTKAWSSMIVGLA 339

Query: 320 VHRNAE 325
           ++  AE
Sbjct: 340 INGLAE 345



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 106/237 (44%), Gaps = 39/237 (16%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K+ F    FV+ +L+ FY+ C  +  A  VFDE  D ++V+W++MI+GY R G + E 
Sbjct: 187 VLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEA 246

Query: 62  LKLFDKMPQ----RNDVSWNSILGGLVRFGSVDD-------------------------- 91
           L LF  M +     ++V+  S++      G++D                           
Sbjct: 247 LGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVNM 306

Query: 92  ---------ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
                    A  VF+ MP +   +W  +I G A NG  ++AL  F  M+   ++PN    
Sbjct: 307 YAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTF 366

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
           + +LSACA  G +  G   +S + +  I     L   ++D+  +   ++ A  +  +
Sbjct: 367 IGVLSACAHSGLVSEGRRYWSSMLEFGIVPSMELYGCMVDLLCRASLVEDACTLVET 423



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 11/161 (6%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           K     D+ +  +L+  Y+ CG +  A+ VFD     D  +W+SMI G   NG   + L+
Sbjct: 290 KQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALE 349

Query: 64  LFDKMPQ----RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS----WVVLISGFA 115
            F +M +     N V++  +L      G V +  R ++ M +  +V     +  ++    
Sbjct: 350 EFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSMLEFGIVPSMELYGCMVDLLC 409

Query: 116 QNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALD 156
           +    ++A  L   ++++ + PN  I  +LL  C +   LD
Sbjct: 410 RASLVEDACTL---VETMPISPNPVIWRTLLVGCKKSKNLD 447


>gi|302765332|ref|XP_002966087.1| hypothetical protein SELMODRAFT_84768 [Selaginella moellendorffii]
 gi|300166901|gb|EFJ33507.1| hypothetical protein SELMODRAFT_84768 [Selaginella moellendorffii]
          Length = 449

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 182/445 (40%), Positives = 269/445 (60%)

Query: 67  KMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALAL 126
           ++   N +  N++L   VR GS+++A +VF+ M      SW  +I+   +N    EAL L
Sbjct: 5   ELKSSNAILENALLNMYVRCGSLEEARKVFDAMDHPDAFSWTNMITACTENCELLEALEL 64

Query: 127 FREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAK 186
           F  M    + P S  L S+L+ACA  GAL  G  ++S +         +   AL+DMYAK
Sbjct: 65  FHRMNLEGIPPTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAK 124

Query: 187 CGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAV 246
           CGS++ + +VF +   ++  ++T+ I  LA +G   EA ELF+ M  +G+  D+ ++I V
Sbjct: 125 CGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICV 184

Query: 247 LSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKP 306
           L ACSH G +++   +FHSM + + I P   HY   +D +GRAG L++AE  I SMP  P
Sbjct: 185 LRACSHAGLIKESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHP 244

Query: 307 DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRK 366
           + V W TLL ACR+H  AE   ++  +L +        Y LL N+Y  T +  +   VRK
Sbjct: 245 ETVTWKTLLNACRIHSQAERATKVAELLAKLAPEDSMAYTLLGNVYAATERYGDQMRVRK 304

Query: 367 TMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRS 426
           +M  R +K+ PG S IE+   VHEF+AGDR+H    EI    E++  +++  GY   T+ 
Sbjct: 305 SMTDRGLKKVPGKSFIEVKNKVHEFVAGDRAHPSRDEILLELEKLGGRMREAGYVPNTKD 364

Query: 427 VMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFK 486
           V+  + EEEKE +IG HSEKLA+AFGLI T PG+ + IVKN+R+CSDCH+A K+++K+ +
Sbjct: 365 VLHAVNEEEKEQLIGLHSEKLAIAFGLIATPPGTPLLIVKNLRVCSDCHAATKVIAKIMR 424

Query: 487 RKISIRDRKHYHHFEDGSCSCLEYW 511
           R+I +RD   +HHFEDG CSC +YW
Sbjct: 425 RRIVVRDTHRFHHFEDGQCSCKDYW 449



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 103/231 (44%), Gaps = 42/231 (18%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           +  ++N+L+  Y  CG + +AR VFD  D  D  SW +MI     N E+LE L+LF +M 
Sbjct: 10  NAILENALLNMYVRCGSLEEARKVFDAMDHPDAFSWTNMITACTENCELLEALELFHRMN 69

Query: 70  -------------------------------QRNDVS--------WNSILGGLVRFGSVD 90
                                           R D S          ++L    + GS++
Sbjct: 70  LEGIPPTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSLE 129

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
            + +VF  M  R+ VSW  +I+  AQ+G+  EAL LF+EM    +  ++   + +L AC+
Sbjct: 130 CSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRACS 189

Query: 151 QLGALDYG-NWVYSYIQKKCI-KLDSILCAALIDMYAKCGSIDLAMQVFHS 199
             G +     + +S ++   I   ++  C AL D   + G +  A ++ HS
Sbjct: 190 HAGLIKESLEFFHSMVEDYAIAPTETHYCRAL-DTIGRAGRLQDAEELIHS 239



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 88/208 (42%), Gaps = 13/208 (6%)

Query: 5   NSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKL 64
           + F   V  + +L+  Y+ CG +  +  VF   +  + VSW +MI    ++G+  E L+L
Sbjct: 106 SGFHSSVLAQTALLDMYAKCGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALEL 165

Query: 65  FDKMPQRNDV----SWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLISGFA 115
           F +M     V    ++  +L      G + ++   F+ M +   ++     +   +    
Sbjct: 166 FKEMNLEGMVADATTFICVLRACSHAGLIKESLEFFHSMVEDYAIAPTETHYCRALDTIG 225

Query: 116 QNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI 175
           + GR ++A  L   + S+   P +    +LL+AC      +    V   + K   + DS+
Sbjct: 226 RAGRLQDAEEL---IHSMPFHPETVTWKTLLNACRIHSQAERATKVAELLAKLAPE-DSM 281

Query: 176 LCAALIDMYAKCGSIDLAMQVFHSYGDK 203
               L ++YA        M+V  S  D+
Sbjct: 282 AYTLLGNVYAATERYGDQMRVRKSMTDR 309


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/541 (36%), Positives = 314/541 (58%), Gaps = 39/541 (7%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM- 68
           D  V N+ +  Y+ CG +  A  VF   +   V SWN++I G+V+NG   + L L+  M 
Sbjct: 435 DELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMR 494

Query: 69  -----PQ----------------------------RNDVSWN-----SILGGLVRFGSVD 90
                P                             RN    +     S++   V+ G + 
Sbjct: 495 GSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFELDEFICISLVSLYVQCGKIL 554

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
            A   F+ M +++LV W  +I+GF+QN  P +AL +F +M S  + P+   ++  L AC+
Sbjct: 555 LAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACS 614

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
           Q+ AL  G  ++ +  K  +   S +  +LIDMYAKCG ++ +  +F     K    +  
Sbjct: 615 QVSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNV 674

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I G  ++GH  +A ELF++M++ G  PDS+++IA+L+AC+H G V +G  Y   M  + 
Sbjct: 675 LITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQMQSLF 734

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
           GIKP+L+HYAC+VD+LGRAG L EA   +  +P KPD+ IW +LL +CR +R+ ++G+++
Sbjct: 735 GIKPKLEHYACVVDMLGRAGRLNEALELVNELPDKPDSRIWSSLLSSCRNYRDLDIGEKV 794

Query: 331 GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHE 390
            N L+E   +    Y+L+SN Y    K +   ++R+ M++  +++  GCS IE+ G V  
Sbjct: 795 ANKLLELGPDKAENYVLISNFYARLGKWDEVRKMRQRMKEIGLQKDAGCSWIEIGGKVSR 854

Query: 391 FLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALA 450
           FL GD S  ++ +I Q W E+ KKI   GY  +T  V+ ++EE+EK  ++  HSEKLA++
Sbjct: 855 FLVGDESLLQSMKIQQTWIELEKKINKIGYKPDTSCVLHELEEDEKIKILRNHSEKLAIS 914

Query: 451 FGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEY 510
           FGL+ T  G+ +R+ KN+RIC DCH+A+KLVSK+ KR+I +RD K +HHF++G CSC +Y
Sbjct: 915 FGLLNTAKGTTLRVCKNLRICVDCHNAIKLVSKIDKREIIVRDNKRFHHFKNGFCSCGDY 974

Query: 511 W 511
           W
Sbjct: 975 W 975



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/363 (28%), Positives = 173/363 (47%), Gaps = 46/363 (12%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + +K     ++ V +SL+  YS CG + +AR +FD +++ +V+SWNSMI GY ++ +   
Sbjct: 324 LALKLGLCGELKVNSSLLDMYSKCGYLCEARVLFD-TNEKNVISWNSMIGGYSKDRDFRG 382

Query: 61  GLKLFDKMP-----------------------------------------QRNDVSWNSI 79
             +L  KM                                          Q +++  N+ 
Sbjct: 383 AFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKLKEIHGYALRHGFIQSDELVANAF 442

Query: 80  LGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS 139
           + G  + GS+  A  VF  M  + + SW  LI G  QNG P++AL L+  M+   LEP+ 
Sbjct: 443 VAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDL 502

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
             + SLLSACA+L +L  G  ++  + +   +LD  +C +L+ +Y +CG I LA   F +
Sbjct: 503 FTIASLLSACARLKSLSCGKEIHGSMLRNGFELDEFICISLVSLYVQCGKILLAKLFFDN 562

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
             +K++  + + I G + N    +A ++F  M S  I PD IS I  L ACS +  +  G
Sbjct: 563 MEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQVSALRLG 622

Query: 260 FYYFHSMFDVHGIKPELDHYAC-MVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
               H  F V     E     C ++D+  + G +E+++N    + +K + V W  L+   
Sbjct: 623 -KELHC-FAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGE-VTWNVLITGY 679

Query: 319 RVH 321
            +H
Sbjct: 680 GIH 682



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 96/359 (26%), Positives = 161/359 (44%), Gaps = 48/359 (13%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +K     DVFV N+LI  Y   G V  A  VFD+    ++VSWNS++   + NG   E  
Sbjct: 223 LKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESY 282

Query: 63  KLFDK--------MP-------------QRNDVSWNSILGGL-VRFGSVDD--------- 91
            LF          MP             ++ +V    +  GL ++ G   +         
Sbjct: 283 GLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCGELKVNSSLLD 342

Query: 92  ---------ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD-LEPNSAI 141
                      RV     +++++SW  +I G++++   + A  L R+MQ  D ++ N   
Sbjct: 343 MYSKCGYLCEARVLFDTNEKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVT 402

Query: 142 LVSLLSACAQLGALDYGNWVYSY-IQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
           L+++L  C +         ++ Y ++   I+ D ++  A +  YAKCGS+  A  VF   
Sbjct: 403 LLNVLPVCEEEIQFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGM 462

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
             K VS++ + I G   NG   +A +L+  M+  G+ PD  +  ++LSAC+ L  +  G 
Sbjct: 463 ESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGK 522

Query: 261 YYFHSMFDVHGIKPELDHYAC--MVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
               SM   +G   ELD + C  +V L  + G +  A+ F  +M  K + V W T++  
Sbjct: 523 EIHGSMLR-NGF--ELDEFICISLVSLYVQCGKILLAKLFFDNMEEK-NLVCWNTMING 577



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 137/288 (47%), Gaps = 46/288 (15%)

Query: 7   FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRN----------- 55
           F  DV +   L+  YS+C    D+  VF+ S   ++  WN++++GY+RN           
Sbjct: 125 FQNDVVLITRLVTMYSICDSPYDSCLVFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFV 184

Query: 56  ------------------------------GEILEGLKLFDKMPQRNDVSWNSILGGLVR 85
                                         GE + G  L  K+     V  N+++    +
Sbjct: 185 EMISLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDVFVG-NALIAMYGK 243

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD--LEPNSAILV 143
           FG V+ A +VF++MP+R+LVSW  ++    +NG  +E+  LF+ + + D  L P+ A +V
Sbjct: 244 FGFVESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMV 303

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           +++  CA+ G +  G   +    K  +  +  + ++L+DMY+KCG +  A  +F +  +K
Sbjct: 304 TVIPLCARQGEVRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLFDT-NEK 362

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKG-ISPDSISYIAVLSAC 250
           +V ++ S I G + +     AFEL   M+ +  +  + ++ + VL  C
Sbjct: 363 NVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVC 410



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 119/231 (51%), Gaps = 8/231 (3%)

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL-DLEPNSAILVSLLSAC 149
           D+C VFN   +++L  W  L+SG+ +N   ++A+ +F EM SL +  P++  L  ++ AC
Sbjct: 147 DSCLVFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKAC 206

Query: 150 AQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYT 209
             +  +  G  V+ +  K  +  D  +  ALI MY K G ++ A++VF     +++ ++ 
Sbjct: 207 VGVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWN 266

Query: 210 SAIFGLAMNGHSIEAFELFENMKS--KGISPDSISYIAVLSACSHLGWVEKGFYYFHSMF 267
           S ++    NG   E++ LF+ + +  +G+ PD  + + V+  C+  G V  G   FH + 
Sbjct: 267 SVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGM-VFHGLA 325

Query: 268 DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVI-WGTLLGA 317
              G+  EL   + ++D+  + G L EA     +      NVI W +++G 
Sbjct: 326 LKLGLCGELKVNSSLLDMYSKCGYLCEARVLFDT---NEKNVISWNSMIGG 373



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 138/303 (45%), Gaps = 53/303 (17%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++N F  D F+  SL+  Y  CG++  A+  FD  ++ ++V WN+MING+ +N    + 
Sbjct: 528 MLRNGFELDEFICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDA 587

Query: 62  LKLFDKMPQRNDVSWN---SILGGL----------------------------------- 83
           L +F +M       W    SI+G L                                   
Sbjct: 588 LDMFHQMLSSK--IWPDEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVTCSLI 645

Query: 84  ---VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
               + G ++ +  +F+++  +  V+W VLI+G+  +G  ++A+ LF+ MQ+    P+S 
Sbjct: 646 DMYAKCGCMEQSQNIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSV 705

Query: 141 ILVSLLSACAQLG----ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
             ++LL+AC   G     L+Y   + S    K  KL+   C  ++DM  + G ++ A+++
Sbjct: 706 TFIALLTACNHAGLVAEGLEYLGQMQSLFGIK-PKLEHYAC--VVDMLGRAGRLNEALEL 762

Query: 197 FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI-SYIAVLSACSHLG- 254
            +   DK  S   S++     N   ++  E   N K   + PD   +Y+ + +  + LG 
Sbjct: 763 VNELPDKPDSRIWSSLLSSCRNYRDLDIGEKVAN-KLLELGPDKAENYVLISNFYARLGK 821

Query: 255 WVE 257
           W E
Sbjct: 822 WDE 824



 Score = 40.0 bits (92), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 77/182 (42%), Gaps = 16/182 (8%)

Query: 145 LLSACAQLGALDYGNWVYSYIQKKC-IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           LL  C +   ++ G  ++++I      + D +L   L+ MY+ C S   +  VF++   K
Sbjct: 99  LLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNASRRK 158

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKS-KGISPDSISYIAVLSACSHLGWVEKGFYY 262
           ++  + + + G   N    +A  +F  M S     PD+ +   V+ AC        G Y 
Sbjct: 159 NLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACV-------GVYD 211

Query: 263 FHSMFDVHGIKPELDHYA------CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLG 316
                 VHG   +    +       ++ + G+ G +E A      MP + + V W +++ 
Sbjct: 212 VRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQR-NLVSWNSVMY 270

Query: 317 AC 318
           AC
Sbjct: 271 AC 272


>gi|302781642|ref|XP_002972595.1| hypothetical protein SELMODRAFT_97496 [Selaginella moellendorffii]
 gi|300160062|gb|EFJ26681.1| hypothetical protein SELMODRAFT_97496 [Selaginella moellendorffii]
          Length = 606

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 207/540 (38%), Positives = 293/540 (54%), Gaps = 40/540 (7%)

Query: 12  FVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQR 71
           ++ N L+Q Y  CG V  A  VF    D +V SW  +I+  +RN      L  +  M  R
Sbjct: 67  YLSNKLVQAYGQCGDVESAHAVFACQPDPNVFSWMMLISACLRNALPRAALGHYRAMQLR 126

Query: 72  ---------------------------------------NDVSWNSILGGLVRFGSVDDA 92
                                                  + V  NS+L    R G +DD 
Sbjct: 127 GCHPDAHVVSAIFCAVADTANLELGRSITAPLASTAMLHDPVVANSLLNMYRRCGGMDDF 186

Query: 93  CRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI-LVSLLSACAQ 151
            R F  MP R  VSW  +++G  Q GR   AL L R M        SA+   +L+ AC  
Sbjct: 187 ERAFWAMPSRDEVSWTTMLAGRIQCGREASALELLRVMDQDGFRITSALTFATLVDACGN 246

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSA 211
           L A+  G  ++  I    + +D +L  AL++MYAKCG +D A ++F    + +   ++S 
Sbjct: 247 LSAIAQGRHLHDRIITSGVCIDVVLHTALLNMYAKCGRVDEARELFDQTLEPNNITFSSM 306

Query: 212 IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG 271
           +   A NGH  +A +LF +M+  G  PDS+++  VL ACSH G+V++ ++YF ++    G
Sbjct: 307 VVAYARNGHFGDALKLFWSMEQDGYKPDSVTFTHVLYACSHGGFVDQAWHYFTTLEPDRG 366

Query: 272 IKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIG 331
           I    +H+ C VDLL RAG L +AE F+  MP+ PD+V W +LL ACR+HRN E+G R  
Sbjct: 367 IPLVAEHFGCAVDLLARAGWLADAEKFLNRMPIPPDSVSWMSLLQACRIHRNVEIGARAA 426

Query: 332 NMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEF 391
             +     +  G Y LLSNIY +  K + A +V+K MR R IK+  G S IE++G   EF
Sbjct: 427 EHVFRLAPHRAGPYSLLSNIYSDAGKWDMAAKVQKLMRDRGIKKPGGRSWIEINGKTSEF 486

Query: 392 LAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAF 451
           + GD  H    +I Q  + + K +K +GY  +T+ V+ D EEEEKE ++ +HSEKLA+  
Sbjct: 487 IVGDSWHPDLVQICQEIQRVSKVMKEHGYVPDTKQVLHDAEEEEKEDILYFHSEKLAIGL 546

Query: 452 GLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           GLI T P + I IVKNIR+C DCH+A K++SKV +RKI IRD   +HH EDG CSC +YW
Sbjct: 547 GLIKTPPKTTISIVKNIRVCPDCHTAAKVISKVTERKIVIRDINLFHHMEDGKCSCRDYW 606



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 109/268 (40%), Gaps = 31/268 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +   +  +D  V NSL+  Y  CG + D    F      D VSW +M+ G ++ G     
Sbjct: 158 LASTAMLHDPVVANSLLNMYRRCGGMDDFERAFWAMPSRDEVSWTTMLAGRIQCGREASA 217

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDAC--------------RVFNQMPKRSLVSW 107
           L+L   M Q        I   L  F ++ DAC              R+        +V  
Sbjct: 218 LELLRVMDQDG----FRITSALT-FATLVDACGNLSAIAQGRHLHDRIITSGVCIDVVLH 272

Query: 108 VVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK 167
             L++ +A+ GR  EA  LF +     LEPN+    S++ A A+ G       ++  +++
Sbjct: 273 TALLNMYAKCGRVDEARELFDQT----LEPNNITFSSMVVAYARNGHFGDALKLFWSMEQ 328

Query: 168 KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFG-----LAMNGHSI 222
              K DS+    ++   +  G +D A   F +          +  FG     LA  G   
Sbjct: 329 DGYKPDSVTFTHVLYACSHGGFVDQAWHYFTTLEPDRGIPLVAEHFGCAVDLLARAGWLA 388

Query: 223 EAFELFENMKSKGISPDSISYIAVLSAC 250
           +A +    M    I PDS+S++++L AC
Sbjct: 389 DAEKFLNRMP---IPPDSVSWMSLLQAC 413



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 43/200 (21%), Positives = 81/200 (40%), Gaps = 7/200 (3%)

Query: 122 EALALFREMQSLDLEPNSAILVS-----LLSACAQLGALDYGNWVYSYIQKKCIKLDSIL 176
           E L +   + +L  +P+   LV      LL  CA   AL   + +++ +          L
Sbjct: 9   ERLPVKDVLAALQRQPHPPGLVREAVELLLHRCAAERALPQAHQLHALMLATGALRSRYL 68

Query: 177 CAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGI 236
              L+  Y +CG ++ A  VF    D +V ++   I     N     A   +  M+ +G 
Sbjct: 69  SNKLVQAYGQCGDVESAHAVFACQPDPNVFSWMMLISACLRNALPRAALGHYRAMQLRGC 128

Query: 237 SPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAE 296
            PD+    A+  A +    +E G      +     +   +   + ++++  R G +++ E
Sbjct: 129 HPDAHVVSAIFCAVADTANLELGRSITAPLASTAMLHDPVVANS-LLNMYRRCGGMDDFE 187

Query: 297 NFIASMPMKPDNVIWGTLLG 316
               +MP + D V W T+L 
Sbjct: 188 RAFWAMPSR-DEVSWTTMLA 206


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/550 (35%), Positives = 313/550 (56%), Gaps = 40/550 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VVK +F ++VFV N+L+ FYS   R+ +AR +F E  ++D +S+N +I     NG + E 
Sbjct: 266 VVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEES 325

Query: 62  LKLFDKMP-QRND--------------------------------------VSWNSILGG 82
           L+LF ++   R D                                      +  NS++  
Sbjct: 326 LELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVGNSLVDM 385

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             +     +A R+F  +  +S V W  LISG+ Q G  ++ L LF EM    +  +SA  
Sbjct: 386 YAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADSATY 445

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S+L ACA L +L  G  ++S I +     +    +AL+DMYAKCGSI  A+Q+F     
Sbjct: 446 ASILRACANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKCGSIKEALQMFQEMPV 505

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           ++  ++ + I   A NG    A   FE M   G+ P+S+S++++L ACSH G VE+G  Y
Sbjct: 506 RNSVSWNALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACSHCGLVEEGLQY 565

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F+SM  V+ ++P  +HYA MVD+L R+G  +EAE  +A MP +PD ++W ++L +CR+H+
Sbjct: 566 FNSMTQVYKLEPRREHYASMVDMLCRSGRFDEAEKLMARMPFEPDEIMWSSILNSCRIHK 625

Query: 323 NAEMGQRIGNMLIESDQNHDGR-YILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
           N E+  +  + L       D   Y+ +SNIY    + ++  +V+K +R+R I++ P  S 
Sbjct: 626 NQELAIKAADQLFNMKGLRDAAPYVSMSNIYAAAGEWDSVGKVKKALRERGIRKVPAYSW 685

Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIG 441
           +E+    H F A D SH +T+EI +  +E+ K+++  GY  ++   + +++EE K   + 
Sbjct: 686 VEIKQKTHVFSANDTSHPQTKEITRKLDELEKQMEEQGYKPDSTCALHNVDEEVKVESLK 745

Query: 442 YHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
           YHSE++A+AF LI T  GS I ++KN+R C+DCH+A+K++SK+  R+I++RD   +HHF 
Sbjct: 746 YHSERIAIAFALISTPKGSPILVMKNLRACNDCHAAIKVISKIVNREITVRDSSRFHHFT 805

Query: 502 DGSCSCLEYW 511
           DGSCSC +YW
Sbjct: 806 DGSCSCKDYW 815



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 139/280 (49%), Gaps = 2/280 (0%)

Query: 39  DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQ 98
           D +   +N  +  +++ G++    KLFD+MP +N +S N+++ G ++ G++  A  +F+ 
Sbjct: 39  DPNTCRFNFQVQTHLQRGDLGAARKLFDEMPHKNVISTNTMIMGYLKSGNLSTARSLFDS 98

Query: 99  MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
           M +RS+V+W +LI G+AQ+ R  EA  LF +M    + P+   L +LLS   +  +++  
Sbjct: 99  MVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATLLSGFTEFESVNEV 158

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
             V+ ++ K       ++C +L+D Y K  S+ LA  +F    +KD   + + + G +  
Sbjct: 159 AQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSKE 218

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDH 278
           G + +A  LF  M+  G  P   ++ AVL+A   +  +E G    HS          +  
Sbjct: 219 GFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFG-QQVHSFVVKCNFVWNVFV 277

Query: 279 YACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
              ++D   +   + EA      MP + D + +  L+  C
Sbjct: 278 ANALLDFYSKHDRIVEARKLFYEMP-EVDGISYNVLITCC 316



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 147/347 (42%), Gaps = 41/347 (11%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           +V   N++I  Y   G +  AR +FD      VV+W  +I GY ++   LE   LF  M 
Sbjct: 72  NVISTNTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMC 131

Query: 70  QR----NDVSWNSILGGLVRFGSVDD---------------------------------- 91
           +     + ++  ++L G   F SV++                                  
Sbjct: 132 RHGMVPDHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLG 191

Query: 92  -ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
            AC +F  M ++  V++  L++G+++ G   +A+ LF +MQ L   P+     ++L+A  
Sbjct: 192 LACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGI 251

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
           Q+  +++G  V+S++ K     +  +  AL+D Y+K   I  A ++F+   + D  +Y  
Sbjct: 252 QMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNV 311

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I   A NG   E+ ELF  ++          +  +LS  ++   +E G    HS   V 
Sbjct: 312 LITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMG-RQIHSQAIVT 370

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
               E+     +VD+  +     EA    A +  +  +V W  L+  
Sbjct: 371 DAISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQ-SSVPWTALISG 416


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 186/469 (39%), Positives = 285/469 (60%), Gaps = 3/469 (0%)

Query: 46  NSMINGYVRNGEILEGLKLFDK--MPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRS 103
           N++I+ Y ++G +    ++ D+  +   N +S+ ++L G V+ G    A  +F+ M  R 
Sbjct: 519 NALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRD 578

Query: 104 LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYS 163
           +++W  +I G+ QNG+  EA+ LFR M  +  EPNS  L ++LSACA L  LDYG  ++ 
Sbjct: 579 VIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQIHC 638

Query: 164 YIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG-DKDVSAYTSAIFGLAMNGHSI 222
              +   +    +  A+I +YA+ GS+ LA +VF      K+   +TS I  +A +G   
Sbjct: 639 KAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQHGLGE 698

Query: 223 EAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACM 282
           +A  LFE M   G+ PD I+Y+ VLSAC+H G+V+KG  Y+  M + HGI P++ HYACM
Sbjct: 699 QAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKGKRYYEQMQNEHGIVPQMSHYACM 758

Query: 283 VDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD 342
           VDL  RAGLL EA  FI  MP+ PD V+WG+LL ACRV +NA++ +     L+  D ++ 
Sbjct: 759 VDLHARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAGKLLSIDPHNS 818

Query: 343 GRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQ 402
           G Y  L+N+Y    +  +A  + K  + + +K+  G S   + G VH F A D  H +  
Sbjct: 819 GAYSALANVYSACGRWNDAARIWKLRKDKGVKKETGFSWTHVRGKVHVFGADDVLHPQRD 878

Query: 403 EIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVI 462
            IY+   E+ ++IK  G+  +  SV+ D+++E KE ++  HSEKLA+AFGLI T   + +
Sbjct: 879 SIYRKAAEMWEEIKKAGFVPDLNSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTL 938

Query: 463 RIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           RI+KN+R+C+DCH+A+K +SK   R+I +RD   +HHF DG CSC +YW
Sbjct: 939 RIMKNLRVCNDCHTAIKFISKFVDREIIVRDATRFHHFRDGYCSCKDYW 987



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 106/385 (27%), Positives = 159/385 (41%), Gaps = 99/385 (25%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VVK   +  V V NS++  Y  CG    AR VF+      V SWN M++ Y   G +   
Sbjct: 373 VVKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELA 432

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
           + +F+ M +R+ VSWN+I                               I+G+ QNG   
Sbjct: 433 VSMFENMVERSIVSWNTI-------------------------------IAGYNQNGLDG 461

Query: 122 EALALFREMQSL-DLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
            AL  F  M S   +EP++  + S+LSACA L  L  G  ++SYI +  +   S +  AL
Sbjct: 462 MALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMNAL 521

Query: 181 IDMYAKCGSIDL---------------------------------AMQVFHSYGDKDVSA 207
           I  YAK GS++                                  A ++F    ++DV A
Sbjct: 522 ISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIA 581

Query: 208 YTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG-------- 259
           +T+ I G   NG + EA ELF +M   G  P+S +  AVLSAC+ L +++ G        
Sbjct: 582 WTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQIHCKAI 641

Query: 260 ---------------FYYFHS--------MFDVHGIKPELDHYACMVDLLGRAGLLEEAE 296
                            Y  S        +FD    + E   +  M+  + + GL E+A 
Sbjct: 642 RSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQHGLGEQAV 701

Query: 297 NFIASM---PMKPDNVIWGTLLGAC 318
                M    +KPD++ +  +L AC
Sbjct: 702 VLFEEMVRVGVKPDHITYVGVLSAC 726



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 144/326 (44%), Gaps = 10/326 (3%)

Query: 53  VRNGEILEGLKLFDKMP--QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVL 110
           V  G   E   LFD +P  +RN  +WNS+L    + G + DA  VF +MP R  VSW ++
Sbjct: 259 VSRGCFREARCLFDDIPYARRNAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIM 318

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCI 170
           I G  ++GR  +A+  F +M S    P+   L ++LS+CA + A   G  V+ ++ K  +
Sbjct: 319 IVGLNRSGRFWDAVKTFLDMVSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGL 378

Query: 171 KLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFEN 230
                +  +++ MY KCG  + A  VF     + VS++   +      G    A  +FEN
Sbjct: 379 SSCVPVANSVLYMYGKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFEN 438

Query: 231 MKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAG 290
           M  + I    +S+  +++  +  G       +F  M     ++P+      ++       
Sbjct: 439 MVERSI----VSWNTIIAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLR 494

Query: 291 LL---EEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYIL 347
           +L   ++  ++I    M   + I   L+       + E  +RI +  + +D N      L
Sbjct: 495 MLKMGKQMHSYILRTGMPCSSQIMNALISTYAKSGSVETARRIMDQAVVADLNVISFTAL 554

Query: 348 LSNIYVETLKGENAEEVRKTMRKRKI 373
           L   YV+    + A E+   M  R +
Sbjct: 555 LEG-YVKLGDTKQAREIFDIMNNRDV 579



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 114/263 (43%), Gaps = 46/263 (17%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDE-SDDLDVVSWNSMINGYVRNGEILEGLKLFDKM- 68
           V V N++I  Y+  G V  AR VFD+     + ++W SMI    ++G   + + LF++M 
Sbjct: 649 VSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQHGLGEQAVVLFEEMV 708

Query: 69  ---PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLISGFAQNGRP 120
               + + +++  +L      G VD   R + QM         +  +  ++   A+ G  
Sbjct: 709 RVGVKPDHITYVGVLSACAHAGFVDKGKRYYEQMQNEHGIVPQMSHYACMVDLHARAGLL 768

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSAC-----AQLGALDYGNWVYSYIQKKCIKLD-- 173
            EA      +Q + + P++ +  SLL+AC     A L  L  G         K + +D  
Sbjct: 769 TEAHEF---IQRMPVAPDTVVWGSLLAACRVRKNADLAELAAG---------KLLSIDPH 816

Query: 174 -SILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS----------AIFG----LAMN 218
            S   +AL ++Y+ CG  + A +++    DK V   T            +FG    L   
Sbjct: 817 NSGAYSALANVYSACGRWNDAARIWKLRKDKGVKKETGFSWTHVRGKVHVFGADDVLHPQ 876

Query: 219 GHSI--EAFELFENMKSKGISPD 239
             SI  +A E++E +K  G  PD
Sbjct: 877 RDSIYRKAAEMWEEIKKAGFVPD 899


>gi|413952609|gb|AFW85258.1| hypothetical protein ZEAMMB73_606432 [Zea mays]
 gi|413952610|gb|AFW85259.1| hypothetical protein ZEAMMB73_606432 [Zea mays]
 gi|413952611|gb|AFW85260.1| hypothetical protein ZEAMMB73_606432 [Zea mays]
          Length = 630

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/444 (43%), Positives = 273/444 (61%), Gaps = 15/444 (3%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALAL-------FRE 129
            ++L    + G V  A +VF++MP R + +W  L++G AQ   P  AL L       FRE
Sbjct: 193 TTLLDSYAKCGDVASARKVFDEMPVRDVATWNALLAGLAQGTEPNLALLLFRRLAGSFRE 252

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
           +   + EPN+  +V+ LSACAQLG L  G  V+ + +      +  +  ALIDMY+KCGS
Sbjct: 253 LPPRE-EPNAVTVVAALSACAQLGTLKDGLAVHEFARTIGAVDNVCVGNALIDMYSKCGS 311

Query: 190 IDLAMQVFHSYG--DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVL 247
           +  A++VFHS    D+ + +Y + I  L+++GH  +A +LF+ M ++ I PD I+Y+AV+
Sbjct: 312 LSRALEVFHSIKLEDRTLVSYNATIQALSIHGHGEDALKLFDEMPAR-IEPDEITYLAVM 370

Query: 248 SACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPD 307
             C+H G V+ G   F SM     + P + HY  +VDLLGRAG L EA + I SMP   D
Sbjct: 371 GGCNHAGLVDDGRRVFDSM----RVPPNMKHYGTIVDLLGRAGRLAEAYDMIMSMPFPAD 426

Query: 308 NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKT 367
            V+W TLLGA ++H N ++ +     L +   N DG Y+LLSN+Y    +  +   VR T
Sbjct: 427 IVLWQTLLGAAKMHGNVDLAELAATKLADLGSNVDGDYVLLSNVYASKSRWVDVGRVRDT 486

Query: 368 MRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSV 427
           MR   +K+ PG S  E+DGV+H+F+ GD+ H + +EIY+  +EI  +I   GY  ET +V
Sbjct: 487 MRSNDVKKVPGFSYTEIDGVMHKFINGDKEHMRWREIYRALDEIGSRICALGYEPETSNV 546

Query: 428 MFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKR 487
           + DI EEEK+  + YHSEKLA+AFGLI T PG  IR++KN+R C DCH   KL+SK + R
Sbjct: 547 LHDIGEEEKQYALSYHSEKLAIAFGLISTPPGETIRVIKNLRTCGDCHVVAKLISKAYNR 606

Query: 488 KISIRDRKHYHHFEDGSCSCLEYW 511
            I IRDR  +H FEDG CSC +YW
Sbjct: 607 VIIIRDRARFHRFEDGHCSCRDYW 630



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 87/206 (42%), Gaps = 48/206 (23%)

Query: 8   AYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGE-------ILE 60
           A DV +  +L+  Y+ CG V  AR VFDE    DV +WN+++ G  +  E          
Sbjct: 186 AADVRLMTTLLDSYAKCGDVASARKVFDEMPVRDVATWNALLAGLAQGTEPNLALLLFRR 245

Query: 61  GLKLFDKMPQRNDVSWNSILGGLV-------------------RFGSVDDAC-------- 93
               F ++P R + +  +++  L                      G+VD+ C        
Sbjct: 246 LAGSFRELPPREEPNAVTVVAALSACAQLGTLKDGLAVHEFARTIGAVDNVCVGNALIDM 305

Query: 94  -----------RVFN--QMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
                       VF+  ++  R+LVS+   I   + +G  ++AL LF EM +  +EP+  
Sbjct: 306 YSKCGSLSRALEVFHSIKLEDRTLVSYNATIQALSIHGHGEDALKLFDEMPA-RIEPDEI 364

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQ 166
             ++++  C   G +D G  V+  ++
Sbjct: 365 TYLAVMGGCNHAGLVDDGRRVFDSMR 390



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 90/221 (40%), Gaps = 43/221 (19%)

Query: 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFEL-- 227
           +  D  L   L+D YAKCG +  A +VF     +DV+ + + + GLA       A  L  
Sbjct: 185 VAADVRLMTTLLDSYAKCGDVASARKVFDEMPVRDVATWNALLAGLAQGTEPNLALLLFR 244

Query: 228 -----FENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF---------------HSMF 267
                F  +  +   P++++ +A LSAC+ LG ++ G                   +++ 
Sbjct: 245 RLAGSFRELPPRE-EPNAVTVVAALSACAQLGTLKDGLAVHEFARTIGAVDNVCVGNALI 303

Query: 268 DV--------------HGIKPE---LDHYACMVDLLGRAGLLEEAENFIASMP--MKPDN 308
           D+              H IK E   L  Y   +  L   G  E+A      MP  ++PD 
Sbjct: 304 DMYSKCGSLSRALEVFHSIKLEDRTLVSYNATIQALSIHGHGEDALKLFDEMPARIEPDE 363

Query: 309 VIWGTLLGACRVHRNAEMGQRI-GNMLIESDQNHDGRYILL 348
           + +  ++G C      + G+R+  +M +  +  H G  + L
Sbjct: 364 ITYLAVMGGCNHAGLVDDGRRVFDSMRVPPNMKHYGTIVDL 404


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/513 (39%), Positives = 297/513 (57%), Gaps = 34/513 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDE--SDDLDVVSWNSMINGYVRNGEIL 59
           +V   F     V N+LI  YS CG V  AR + ++  + DL +  + ++++GY++     
Sbjct: 305 IVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIK----- 359

Query: 60  EGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGR 119
                                      G ++ A  +F  +  R +V+W  +I G+ Q+G 
Sbjct: 360 --------------------------LGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGS 393

Query: 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
             EA+ LFR M      PNS  L ++LS  + L +L +G  ++    K        +  A
Sbjct: 394 YGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNA 453

Query: 180 LIDMYAKCGSIDLAMQVFHSYG-DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISP 238
           LI MYAK G+I  A + F     ++D  ++TS I  LA +GH+ EA ELFE M  +G+ P
Sbjct: 454 LITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRP 513

Query: 239 DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENF 298
           D I+Y+ V SAC+H G V +G  YF  M DV  I P L HYACMVDL GRAGLL+EA+ F
Sbjct: 514 DHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEF 573

Query: 299 IASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKG 358
           I  MP++PD V WG+LL ACRVH+N ++G+     L+  +  + G Y  L+N+Y    K 
Sbjct: 574 IEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKW 633

Query: 359 ENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNY 418
           E A ++RK+M+  ++K+  G S IE+   VH F   D +H +  EIY   ++I  +IK  
Sbjct: 634 EEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKM 693

Query: 419 GYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAM 478
           GY  +T SV+ D+EEE KE ++ +HSEKLA+AFGLI T   + +RI+KN+R+C+DCH+A+
Sbjct: 694 GYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAI 753

Query: 479 KLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           K +SK+  R+I +RD   +HHF+DG CSC +YW
Sbjct: 754 KFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 138/290 (47%), Gaps = 41/290 (14%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N+++N Y + G  L   KLFD+MP R   SWN++L    + G +D  C  F+Q+P+R  V
Sbjct: 53  NNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSV 112

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           SW  +I G+   G+  +A+ +  +M    +EP    L ++L++ A    ++ G  V+S+I
Sbjct: 113 SWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFI 172

Query: 166 QKKCIKLDSILCAALIDMYAKC-------------------------------GSIDLAM 194
            K  ++ +  +  +L++MYAKC                               G +DLAM
Sbjct: 173 VKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAM 232

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM-KSKGISPDSISYIAVLSACSHL 253
             F    ++D+  + S I G    G+ + A ++F  M +   +SPD  +  +VLSAC++L
Sbjct: 233 AQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANL 292

Query: 254 GWVEKG----FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI 299
             +  G     +   + FD+ GI         ++ +  R G +E A   I
Sbjct: 293 EKLCIGKQIHSHIVTTGFDISGIV-----LNALISMYSRCGGVETARRLI 337



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 161/363 (44%), Gaps = 70/363 (19%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           NS++N Y + G+ +    +FD+M  R+  SWN+++   ++ G +D A   F QM +R +V
Sbjct: 185 NSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIV 244

Query: 106 SWVVLISGFAQNGRPKEALALFREM--QSLDLEPNSAILVSLLSACAQLGALDYGNWVYS 163
           +W  +ISGF Q G    AL +F +M   SL L P+   L S+LSACA L  L  G  ++S
Sbjct: 245 TWNSMISGFNQRGYDLRALDIFSKMLRDSL-LSPDRFTLASVLSACANLEKLCIGKQIHS 303

Query: 164 YIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ---------------------------- 195
           +I      +  I+  ALI MY++CG ++ A +                            
Sbjct: 304 HIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDM 363

Query: 196 -----VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250
                +F S  D+DV A+T+ I G   +G   EA  LF +M   G  P+S +  A+LS  
Sbjct: 364 NQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVA 423

Query: 251 S-----------HLGWVEKGFYYFHSM--------------------FDVHGIKPELDHY 279
           S           H   V+ G  Y  S+                    FD+   + +   +
Sbjct: 424 SSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSW 483

Query: 280 ACMVDLLGRAGLLEEAENFIASMPM---KPDNVIWGTLLGACRVHRNAEMGQRIGNMLIE 336
             M+  L + G  EEA     +M M   +PD++ +  +  AC        G++  +M+ +
Sbjct: 484 TSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKD 543

Query: 337 SDQ 339
            D+
Sbjct: 544 VDK 546


>gi|224141409|ref|XP_002324065.1| predicted protein [Populus trichocarpa]
 gi|222867067|gb|EEF04198.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/551 (36%), Positives = 316/551 (57%), Gaps = 41/551 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +++K  F++  +V+N+L+  YS C  V+DA  V++E    D+V++NS+++  V NG + E
Sbjct: 158 LLLKTGFSFHNYVRNALVSMYSKCSIVQDAMGVWNEVPVNDIVAYNSILSSLVENGYLRE 217

Query: 61  GLKLFDKMPQRNDVSWN--------SILGGL--VRFG--------SVDDACR-------- 94
           GL++   M   + V W+        S+   L  +R G        + D  C         
Sbjct: 218 GLEVLRSMVSES-VKWDKVTFVNAFSLCASLKDLRLGLHVHGKMLTSDVECDAYVSSAII 276

Query: 95  --------------VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
                         VF+ +  R++V W  +++   QNG  +EAL LF +M+  +++ N  
Sbjct: 277 NMYGKCGKSLMARGVFDGLQSRNVVLWTAVMASCFQNGCFEEALNLFSKMEQENVKSNEF 336

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
               LL+ACA L A   G+ ++ + +K   K   ++  ALI+MYAK G I+ A +VF   
Sbjct: 337 TYAVLLNACAGLSARRNGSLLHGHSEKSGFKHHVMVGNALINMYAKSGDIEAAKKVFSDM 396

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
             +D+  + + I G + +G   +A  +F++M +    P+ +++  VLSAC HLG V++GF
Sbjct: 397 MHRDIITWNAMICGFSHHGLGKKALLVFQDMLAAEEHPNYVTFTGVLSACGHLGLVQEGF 456

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
           YY H +    G++P L+HY C+V LL + G L EA NF+ + P+K D V W TLL AC V
Sbjct: 457 YYLHHLMKQFGVQPGLEHYTCIVSLLSKTGQLNEARNFMRTAPVKWDVVAWRTLLNACHV 516

Query: 321 HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS 380
           H+N  +G+ +   ++E D N  G Y LLSNIY +  + +   +VRK MR +KIK+ PG S
Sbjct: 517 HQNYGLGRWVAEFVLEMDPNDVGTYTLLSNIYAKEKRWDGVVKVRKLMRDKKIKKEPGVS 576

Query: 381 LIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVI 440
            IE+  V H F + D  H    + YQ  +E++  IK  GY  +  +V+ D+E+E+KE  +
Sbjct: 577 WIEIGNVTHIFTSEDNKHPDYGQTYQKVKELLAMIKPLGYTPDIGAVLHDVEDEQKEYYL 636

Query: 441 GYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF 500
            YHSEKLA+A+GL+     + I ++KN+RIC DCHSA++L+SKV  R I +RD   +HHF
Sbjct: 637 SYHSEKLAIAYGLLKLPSEASILVIKNLRICDDCHSAVRLISKVTNRVIVVRDANRFHHF 696

Query: 501 EDGSCSCLEYW 511
            DG CSCL+YW
Sbjct: 697 RDGRCSCLDYW 707



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 156/345 (45%), Gaps = 50/345 (14%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDV 74
           NSLI FY+   +V  A  +FD   + +VVSW++++ GY+ NG  L+ ++L   M    +V
Sbjct: 70  NSLINFYAKVNQVSIAHNLFDRMPERNVVSWSALMTGYLLNGFSLKVIRLLKDMISEGNV 129

Query: 75  SWNSIL---------------------GGLVRFG-------------------SVDDACR 94
           S N  +                     G L++ G                    V DA  
Sbjct: 130 SPNEYILAIAISSCCDRGRVEEGRQCHGLLLKTGFSFHNYVRNALVSMYSKCSIVQDAMG 189

Query: 95  VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA 154
           V+N++P   +V++  ++S   +NG  +E L + R M S  ++ +    V+  S CA L  
Sbjct: 190 VWNEVPVNDIVAYNSILSSLVENGYLREGLEVLRSMVSESVKWDKVTFVNAFSLCASLKD 249

Query: 155 LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFG 214
           L  G  V+  +    ++ D+ + +A+I+MY KCG   +A  VF     ++V  +T+ +  
Sbjct: 250 LRLGLHVHGKMLTSDVECDAYVSSAIINMYGKCGKSLMARGVFDGLQSRNVVLWTAVMAS 309

Query: 215 LAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP 274
              NG   EA  LF  M+ + +  +  +Y  +L+AC+ L     G     S+   H  K 
Sbjct: 310 CFQNGCFEEALNLFSKMEQENVKSNEFTYAVLLNACAGLSARRNG-----SLLHGHSEKS 364

Query: 275 ELDHYA----CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
              H+      ++++  ++G +E A+   + M M  D + W  ++
Sbjct: 365 GFKHHVMVGNALINMYAKSGDIEAAKKVFSDM-MHRDIITWNAMI 408



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 122/247 (49%), Gaps = 11/247 (4%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL-DL 135
           NS++    +   V  A  +F++MP+R++VSW  L++G+  NG   + + L ++M S  ++
Sbjct: 70  NSLINFYAKVNQVSIAHNLFDRMPERNVVSWSALMTGYLLNGFSLKVIRLLKDMISEGNV 129

Query: 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ 195
            PN  IL   +S+C   G ++ G   +  + K      + +  AL+ MY+KC  +  AM 
Sbjct: 130 SPNEYILAIAISSCCDRGRVEEGRQCHGLLLKTGFSFHNYVRNALVSMYSKCSIVQDAMG 189

Query: 196 VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGW 255
           V++     D+ AY S +  L  NG+  E  E+  +M S+ +  D ++++   S C+ L  
Sbjct: 190 VWNEVPVNDIVAYNSILSSLVENGYLREGLEVLRSMVSESVKWDKVTFVNAFSLCASLKD 249

Query: 256 VEKGFYYFHSMF--DVHGIKPELDHY--ACMVDLLGRAGLLEEAENFIASMPMKPDNVIW 311
           +  G +    M   DV     E D Y  + ++++ G+ G    A      +  + + V+W
Sbjct: 250 LRLGLHVHGKMLTSDV-----ECDAYVSSAIINMYGKCGKSLMARGVFDGLQSR-NVVLW 303

Query: 312 GTLLGAC 318
             ++ +C
Sbjct: 304 TAVMASC 310


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/548 (34%), Positives = 310/548 (56%), Gaps = 38/548 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++ + F  D    N LI  Y+ CG +  A+ VFD +   D V+WNS+INGY ++G   EG
Sbjct: 348 LIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEG 407

Query: 62  LKLFD--KMPQRND------------------------------------VSWNSILGGL 83
           L+ F   KM ++ D                                    +  NS+L   
Sbjct: 408 LESFKMMKMERKPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVY 467

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
            + G +DD  +VF+ M    ++SW  +I+             +  EM++  L P+ A ++
Sbjct: 468 AKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVL 527

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
            +L  C+ L     G  ++ YI K   + +  +  ALI+MY+KCGS++  ++VF    +K
Sbjct: 528 GILPMCSLLAVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEK 587

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           DV  +T+ I    M G   +A + F++M+  G+ PDS+++IA + ACSH G V++G  +F
Sbjct: 588 DVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFF 647

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
             M   + ++P ++HYAC+VDLL R+GLL +AE FI SMPMKPD  +WG LL ACR   N
Sbjct: 648 DRMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGN 707

Query: 324 AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE 383
             + QR+   ++E + +  G Y+L+SNIY    K +  + VR +M+ + +K+ PG S IE
Sbjct: 708 TNIAQRVSKKILELNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIE 767

Query: 384 LDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYH 443
           +   V+ F  GD+S E+  ++    E +V+ +   GY  + +  + D+EE++K  ++  H
Sbjct: 768 IQKRVYVFRTGDKSFEQYDKVKDLLEYLVRLMAKEGYVADLQFALHDVEEDDKRDMLCGH 827

Query: 444 SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
           SE+LA+AFGL+ TKPGS + ++KN+R+C DCH+  K ++K+ +R+I +RD   +H F+DG
Sbjct: 828 SERLAIAFGLLNTKPGSPLLVMKNLRVCGDCHTVTKYITKIMQREILVRDANRFHRFKDG 887

Query: 504 SCSCLEYW 511
           +CSC ++W
Sbjct: 888 ACSCGDHW 895



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 104/370 (28%), Positives = 173/370 (46%), Gaps = 44/370 (11%)

Query: 7   FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFD 66
           F  D+++ N+LI  YS    + +AR+VF+E  + D VSWNS+I+GY  NG   + L ++ 
Sbjct: 152 FESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYH 211

Query: 67  K-----------------------MPQRNDVS----------------WNSILGGLVRFG 87
           K                       M  +  V+                 N +L    +F 
Sbjct: 212 KFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFE 271

Query: 88  SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLS 147
            + +A RVF++M  +  V+W  +I G+AQ GR + ++ LF +M      P+   + S + 
Sbjct: 272 RLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMID-GFVPDMLSITSTIR 330

Query: 148 ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSA 207
           AC Q G L  G +V+ Y+     + D++ C  LIDMYAKCG +  A +VF +   KD   
Sbjct: 331 ACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVT 390

Query: 208 YTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMF 267
           + S I G   +G+  E  E F+ MK +   PDS++++ +LS  S L  + +G    H   
Sbjct: 391 WNSLINGYTQSGYYKEGLESFKMMKMER-KPDSVTFVLLLSIFSQLADINQG-RGIHCDV 448

Query: 268 DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMG 327
              G + EL     ++D+  + G +++     + M    D + W T++ +     +  +G
Sbjct: 449 IKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAH-DIISWNTVIASSVHFDDCTVG 507

Query: 328 -QRIGNMLIE 336
            Q I  M  E
Sbjct: 508 FQMINEMRTE 517



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 156/355 (43%), Gaps = 41/355 (11%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++ K   A DV + N L+  Y    R+R+AR VF +    D V+WN+MI GY + G    
Sbjct: 247 VIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEA 306

Query: 61  GLKLFDKM------------------PQRND--------------------VSWNSILGG 82
            +KLF  M                   Q  D                    V+ N ++  
Sbjct: 307 SVKLFMDMIDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDM 366

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G +  A  VF+    +  V+W  LI+G+ Q+G  KE L  F+ M+ ++ +P+S   
Sbjct: 367 YAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMK-MERKPDSVTF 425

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           V LLS  +QL  ++ G  ++  + K   + + I+  +L+D+YAKCG +D  ++VF     
Sbjct: 426 VLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSA 485

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
            D+ ++ + I            F++   M+++G+ PD  + + +L  CS L    +G   
Sbjct: 486 HDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQG-KE 544

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
            H      G +  +     ++++  + G LE        M  K D V W  L+ A
Sbjct: 545 IHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEK-DVVTWTALISA 598



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 108/216 (50%), Gaps = 2/216 (0%)

Query: 100 PKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGN 159
           P  ++  W  +I     NG   +AL  + EM+   L+P++    S++++CA++  L+ G 
Sbjct: 82  PTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGC 141

Query: 160 WVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNG 219
            V+ +  +   + D  +  ALIDMY++   +D A  VF    ++D  ++ S I G   NG
Sbjct: 142 IVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNG 201

Query: 220 HSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHY 279
              +A +++   +  G+ PD  +  +VL AC  L  V++G    H + +  GI  ++   
Sbjct: 202 FWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGV-AVHGVIEKIGIAGDVIIG 260

Query: 280 ACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
             ++ +  +   L EA    + M +K D+V W T++
Sbjct: 261 NGLLSMYFKFERLREARRVFSKMAVK-DSVTWNTMI 295


>gi|357457659|ref|XP_003599110.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488158|gb|AES69361.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 623

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 203/553 (36%), Positives = 312/553 (56%), Gaps = 43/553 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K+    D F+ + L+  Y   G  +DA  +FDE    D VSWNS+++G  + G++ E 
Sbjct: 71  VIKSLDYRDGFIGDQLVSCYLKMGPTKDAYLLFDEMPKKDFVSWNSLVSGLAKIGQLGEC 130

Query: 62  LKLFDKMPQRNDVSWN------------------------------------SILGGLV- 84
           L +F KM   +++  N                                     ++  LV 
Sbjct: 131 LSVFCKMKSDSELKLNEFTFLSVISACVSEKACDEGYYVHCCAMKLGLVYEVKVVNALVN 190

Query: 85  ---RFGSVDDACRVFNQMPK--RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS 139
              +FG V+ A R+F++MP+  +S+VSW  +++  AQNG P EA   F  M+     P+ 
Sbjct: 191 MYGKFGFVESAFRLFSEMPESEKSIVSWNSIVAVCAQNGMPNEAFNCFDMMRVNGFFPDD 250

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
           A +VSLL AC           ++  I    +  +  +   L+++Y+K G ++ + +VF  
Sbjct: 251 ATMVSLLQACENFPLGRMVEVLHGVIFTCGLDENLTIVTTLLNLYSKLGRLNNSRKVFEE 310

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENM-KSKGISPDSISYIAVLSACSHLGWVEK 258
               D  A+T+ + G AM+G   EA E FE + + +G+ PD +++  +LSACSH G V++
Sbjct: 311 ISKPDKVAWTAMLAGYAMHGCGKEAIEFFERIVREEGMEPDHVTFTHLLSACSHSGLVKE 370

Query: 259 GFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
           G Y+F  M DV+ ++P LDHY+CMVDLLGR GLL++A   I +MP +P++ +WG LLGAC
Sbjct: 371 GKYFFRVMSDVYKVQPRLDHYSCMVDLLGRCGLLDDAHELIKNMPFEPNSGVWGALLGAC 430

Query: 319 RVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPG 378
           RVHRN ++G+     LI  D +    YI+LSN+Y       +A +VR  M+ + + R  G
Sbjct: 431 RVHRNIDLGKEAAKNLIALDPSDPRNYIMLSNMYSAAGLWNDASKVRTLMKNKVLTRNQG 490

Query: 379 CSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKET 438
           CS IE    +H F+  D +H  +  I++  EE++KKI++ G+  ET S++ D++EE K  
Sbjct: 491 CSFIEHGNKIHRFVVDDYTHPDSHRIHKKLEEVMKKIQDVGFVHETESILHDVDEEVKID 550

Query: 439 VIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYH 498
           +I  HSEK+ALA+GL+ T     + I+KN+RIC DCH+ +K VS V KR I IRD K +H
Sbjct: 551 MITKHSEKIALAYGLLVTNADMPLVIIKNLRICRDCHNTVKFVSMVEKRTIIIRDTKRFH 610

Query: 499 HFEDGSCSCLEYW 511
            F  G CSC +YW
Sbjct: 611 QFSGGLCSCGDYW 623



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 74/160 (46%), Gaps = 3/160 (1%)

Query: 161 VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGH 220
           +++++ K     D  +   L+  Y K G    A  +F     KD  ++ S + GLA  G 
Sbjct: 67  IHAHVIKSLDYRDGFIGDQLVSCYLKMGPTKDAYLLFDEMPKKDFVSWNSLVSGLAKIGQ 126

Query: 221 SIEAFELFENMKSKG-ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHY 279
             E   +F  MKS   +  +  ++++V+SAC      ++G YY H      G+  E+   
Sbjct: 127 LGECLSVFCKMKSDSELKLNEFTFLSVISACVSEKACDEG-YYVHCCAMKLGLVYEVKVV 185

Query: 280 ACMVDLLGRAGLLEEAENFIASMPMKPDNVI-WGTLLGAC 318
             +V++ G+ G +E A    + MP    +++ W +++  C
Sbjct: 186 NALVNMYGKFGFVESAFRLFSEMPESEKSIVSWNSIVAVC 225


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/549 (35%), Positives = 316/549 (57%), Gaps = 41/549 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLD-VVSWNSMINGYVRNGEILE 60
            +K+  + +  V  +L+   + C  + DA  +F     +  VVSW +MI+GY++NG+  +
Sbjct: 330 TLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQ 389

Query: 61  GLKLFDKMPQR----NDVSWNSILG-------------------------------GLVR 85
            + LF  M +     N  ++++IL                                  V+
Sbjct: 390 AVNLFSLMRREGVKPNHFTYSTILTVQHAVFISEIHAEVIKTNYEKSSSVGTALLDAFVK 449

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
            G++ DA +VF  +  + +++W  +++G+AQ G  +EA  +F ++    ++PN     S+
Sbjct: 450 IGNISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSI 509

Query: 146 LSAC-AQLGALDYGNWVYSYIQKKCIKLDSILC--AALIDMYAKCGSIDLAMQVFHSYGD 202
           ++AC A   +++ G   ++Y  K  ++L++ LC  ++L+ +YAK G+I+ A ++F    +
Sbjct: 510 INACTAPTASVEQGKQFHAYAIK--LRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQKE 567

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           +D+ ++ S I G A +G + +A E+FE M+ + +  D+I++I V+SAC+H G V KG  Y
Sbjct: 568 RDLVSWNSMISGYAQHGQAKKALEVFEEMQKRNLEVDAITFIGVISACAHAGLVGKGQNY 627

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F+ M + H I P ++HY+CM+DL  RAG+L +A + I  MP  P   +W  +L A RVHR
Sbjct: 628 FNIMINDHHINPTMEHYSCMIDLYSRAGMLGKAMDIINGMPFPPAATVWRIVLAASRVHR 687

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           N E+G+     +I  +  H   Y+LLSNIY           VRK M KR++K+ PG S I
Sbjct: 688 NIELGKLAAEKIISLEPQHSAAYVLLSNIYAAAGNWHEKVNVRKLMDKRRVKKEPGYSWI 747

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E+    + FLAGD SH  +  IY    E+  ++++ GY  +T  V  DIE+E+KET++ +
Sbjct: 748 EVKNKTYSFLAGDLSHPLSDHIYSKLSELNTRLRDVGYQPDTNYVFHDIEDEQKETILSH 807

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSE+LA+AFGLI T P   ++IVKN+R+C DCHS +KLVS V KR I +RD   +HHF+ 
Sbjct: 808 HSERLAIAFGLIATLPEIPLQIVKNLRVCGDCHSFIKLVSLVEKRYIVVRDSNRFHHFKG 867

Query: 503 GSCSCLEYW 511
           G CSC +YW
Sbjct: 868 GLCSCGDYW 876



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 102/370 (27%), Positives = 173/370 (46%), Gaps = 55/370 (14%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +VVK  F  +  V NSLI   S  G +RDAR VFD  ++ D VSWNSMI G+V NG+ LE
Sbjct: 228 LVVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLE 287

Query: 61  GLKLFDKMP---------------------------------------QRNDVSWNSILG 81
             + F+ M                                          N     +++ 
Sbjct: 288 AFETFNNMQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMV 347

Query: 82  GLVRFGSVDDACRVFNQMPK-RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
            L +   +DDA  +F+ M   +S+VSW  +ISG+ QNG   +A+ LF  M+   ++PN  
Sbjct: 348 ALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHF 407

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
              ++L+    +    + + +++ + K   +  S +  AL+D + K G+I  A++VF   
Sbjct: 408 TYSTILTVQHAV----FISEIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELI 463

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS-HLGWVEKG 259
             KDV A+++ + G A  G + EA ++F  +  +GI P+  ++ ++++AC+     VE+G
Sbjct: 464 ETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQG 523

Query: 260 FYYFHSMFDVHGIKPELDHYAC----MVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
                  F  + IK  L++  C    +V L  + G +E A         + D V W +++
Sbjct: 524 -----KQFHAYAIKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQKER-DLVSWNSMI 577

Query: 316 GACRVHRNAE 325
                H  A+
Sbjct: 578 SGYAQHGQAK 587



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 127/286 (44%), Gaps = 40/286 (13%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           VK    + + V NSL+  Y+  G VRD R VFDE  D DVVSWNS++ GY  N    +  
Sbjct: 129 VKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVW 188

Query: 63  KLFDKM------PQRNDVSW---------------------------------NSILGGL 83
           +LF  M      P    VS                                  NS++  L
Sbjct: 189 ELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLVCNSLISML 248

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
            + G + DA  VF+ M  +  VSW  +I+G   NG+  EA   F  MQ    +P  A   
Sbjct: 249 SKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATFA 308

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH-SYGD 202
           S++ +CA L  L     ++    K  +  +  +  AL+    KC  ID A  +F   +G 
Sbjct: 309 SVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGV 368

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248
           + V ++T+ I G   NG + +A  LF  M+ +G+ P+  +Y  +L+
Sbjct: 369 QSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILT 414



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 98/177 (55%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136
           NS++    + G+V D  RVF++M  R +VSW  L++G++ N    +   LF  MQ     
Sbjct: 141 NSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYR 200

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
           P+   + ++++A A  GA+  G  +++ + K   + + ++C +LI M +K G +  A  V
Sbjct: 201 PDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLVCNSLISMLSKSGMLRDARVV 260

Query: 197 FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL 253
           F +  +KD  ++ S I G  +NG  +EAFE F NM+  G  P   ++ +V+ +C+ L
Sbjct: 261 FDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKSCASL 317



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 115/230 (50%), Gaps = 10/230 (4%)

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           A ++F+Q P R L     L+  +++  + +EAL LF  +    L P+S  +  +LS CA 
Sbjct: 55  AQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCAG 114

Query: 152 LGALDYGNWVYSYIQKKCIKLDSI----LCAALIDMYAKCGSIDLAMQVFHSYGDKDVSA 207
                +   V   +  +C+K   +    +  +L+DMY K G++    +VF   GD+DV +
Sbjct: 115 ----SFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVS 170

Query: 208 YTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMF 267
           + S + G + N  + + +ELF  M+ +G  PD  +   V++A ++ G V  G    H++ 
Sbjct: 171 WNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGM-QIHALV 229

Query: 268 DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
              G + E      ++ +L ++G+L +A     +M  K D+V W +++  
Sbjct: 230 VKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENK-DSVSWNSMIAG 278


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/548 (35%), Positives = 311/548 (56%), Gaps = 39/548 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           ++N    ++ + N+LI  Y+ C  V+   + F+   + D++SW ++I GY +N   LE +
Sbjct: 376 IRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAI 435

Query: 63  KLFDK----------------------MPQRNDVS----------------WNSILGGLV 84
            LF K                      +  RN +                  N+I+    
Sbjct: 436 NLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLADIMLQNAIVNVYG 495

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
             G  D A R F  +  + +VSW  +I+    NG P EAL LF  ++  +++P+S  ++S
Sbjct: 496 EVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIIS 555

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
            LSA A L +L  G  ++ ++ +K   L+  + ++L+DMYA CG+++ + ++FHS   +D
Sbjct: 556 ALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRD 615

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           +  +TS I    M+G   EA  LF+ M  + + PD I+++A+L ACSH G + +G  +F 
Sbjct: 616 LILWTSMINANGMHGCGNEAIALFKKMTDENVIPDHITFLALLYACSHSGLMVEGKRFFE 675

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
            M   + ++P  +HYACMVDLL R+  LEEA  F+ SMP+KP + +W  LLGAC +H N 
Sbjct: 676 IMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYQFVRSMPIKPSSEVWCALLGACHIHSNK 735

Query: 325 EMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIEL 384
           E+G+     L++SD  + G+Y L+SNI+    +  + EEVR  M+   +K+ PGCS IE+
Sbjct: 736 ELGELAAKELLQSDTKNSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEV 795

Query: 385 DGVVHEFLAGDRSHEKTQEIYQFWEEIVKKI-KNYGYNVETRSVMFDIEEEEKETVIGYH 443
           D  +H F+A D+SH +T +IY    +  K + K  GY  +T+ V  ++ EEEK  ++  H
Sbjct: 796 DNKIHTFMARDKSHPQTDDIYLKLAQFTKLLGKKGGYIAQTKFVFHNVSEEEKTQMLYRH 855

Query: 444 SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
           SE+LAL +GL+ T  G+ IRI KN+RIC DCH+  K+ S+V +R + +RD   +HHFE G
Sbjct: 856 SERLALGYGLLVTPKGTSIRITKNLRICDDCHTFFKIASEVSQRALVVRDANRFHHFERG 915

Query: 504 SCSCLEYW 511
            CSC ++W
Sbjct: 916 LCSCGDFW 923



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/356 (29%), Positives = 177/356 (49%), Gaps = 43/356 (12%)

Query: 5   NSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKL 64
           N FA DV+V N+LI  Y+ CGR+ DA  VF      D VSWN++++G V+N    + L  
Sbjct: 278 NHFA-DVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNY 336

Query: 65  FDKM---PQRND-VSWNSILGGLVRFGSVDDACRV------------------------- 95
           F  M    Q+ D VS  +++    R G++ +   V                         
Sbjct: 337 FRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAK 396

Query: 96  ----------FNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
                     F  M ++ L+SW  +I+G+AQN    EA+ LFR++Q   ++ +  ++ S+
Sbjct: 397 CCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSV 456

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
           L AC+ L + ++   ++ Y+ K+ +  D +L  A++++Y + G  D A + F S   KD+
Sbjct: 457 LRACSGLKSRNFIREIHGYVFKRDLA-DIMLQNAIVNVYGEVGHRDYARRAFESIRSKDI 515

Query: 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHS 265
            ++TS I     NG  +EA ELF ++K   I PDSI+ I+ LSA ++L  ++KG    H 
Sbjct: 516 VSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKG-KEIHG 574

Query: 266 MFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
                G   E    + +VD+    G +E +     S+  + D ++W +++ A  +H
Sbjct: 575 FLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQR-DLILWTSMINANGMH 629



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 107/364 (29%), Positives = 167/364 (45%), Gaps = 54/364 (14%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDE--SDDLDVVSWNSMINGYVRNGEI 58
           + VK  F   VFV N+LI  Y  CG +  AR +FD    +  D VSWNS+I+ +V  G+ 
Sbjct: 170 VAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKC 229

Query: 59  LEGLKLFDKMPQRNDVS---------------------------------------WNSI 79
           LE L LF +M +    S                                        N++
Sbjct: 230 LEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYVANAL 289

Query: 80  LGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS 139
           +    + G ++DA RVF  M  R  VSW  L+SG  QN   ++AL  FR+MQ+   +P+ 
Sbjct: 290 IAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQ 349

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
             +++L++A  + G L  G  V++Y  +  +  +  +   LIDMYAKC  +      F  
Sbjct: 350 VSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFEC 409

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
             +KD+ ++T+ I G A N   +EA  LF  ++ KG+  D +   +VL ACS  G   + 
Sbjct: 410 MHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACS--GLKSRN 467

Query: 260 FYYFHSMFDVHGIKPELDHYACM-----VDLLGRAGLLEEAENFIASMPMKPDNVIWGTL 314
           F     + ++HG   + D    M     V++ G  G  + A     S+  K D V W ++
Sbjct: 468 F-----IREIHGYVFKRDLADIMLQNAIVNVYGEVGHRDYARRAFESIRSK-DIVSWTSM 521

Query: 315 LGAC 318
           +  C
Sbjct: 522 ITCC 525



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 117/237 (49%), Gaps = 16/237 (6%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           GS+ DA +VF++M +R++ +W  ++  F  +G+  EA+ L++EM+ L +  ++    S+L
Sbjct: 93  GSLKDAVKVFDEMTERTIFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVL 152

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS--YGDKD 204
            AC  LG    G  ++    K        +C ALI MY KCG +  A  +F       +D
Sbjct: 153 KACGALGESRLGAEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKED 212

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
             ++ S I      G  +EA  LF  M+  G++ ++ +++A L       +V+ G     
Sbjct: 213 TVSWNSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLG----- 267

Query: 265 SMFDVHGIKPELDHYA------CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
               +HG   + +H+A       ++ +  + G +E+AE   ASM  + D V W TLL
Sbjct: 268 --MGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCR-DYVSWNTLL 321



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 128/289 (44%), Gaps = 41/289 (14%)

Query: 12  FVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM--- 68
           F+   L+  Y  CG ++DA  VFDE  +  + +WN+M+  +V +G+ LE ++L+ +M   
Sbjct: 80  FLATKLLHMYEKCGSLKDAVKVFDEMTERTIFTWNAMMGAFVSSGKYLEAIELYKEMRVL 139

Query: 69  -------------------------PQRNDVS-----------WNSILGGLVRFGSVDDA 92
                                     + + V+            N+++    + G +  A
Sbjct: 140 GVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGA 199

Query: 93  CRVFN--QMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
             +F+   M K   VSW  +IS     G+  EAL+LFR MQ + +  N+   V+ L    
Sbjct: 200 RVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVE 259

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
               +  G  ++    K     D  +  ALI MYAKCG ++ A +VF S   +D  ++ +
Sbjct: 260 DPSFVKLGMGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNT 319

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
            + GL  N    +A   F +M++    PD +S + +++A    G +  G
Sbjct: 320 LLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNG 368



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 87/180 (48%), Gaps = 16/180 (8%)

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           LL  C  + AL  G  +++ + K    L + L   L+ MY KCGS+  A++VF    ++ 
Sbjct: 52  LLDLCVAVKALPQGQQLHARLLKS--HLSAFLATKLLHMYEKCGSLKDAVKVFDEMTERT 109

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           +  + + +     +G  +EA EL++ M+  G++ D+ ++ +VL AC  LG    G     
Sbjct: 110 IFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLG----- 164

Query: 265 SMFDVHGIKPELDH----YAC--MVDLLGRAGLLEEAENFIASMPM-KPDNVIWGTLLGA 317
              ++HG+  +       + C  ++ + G+ G L  A      + M K D V W +++ A
Sbjct: 165 --AEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISA 222



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 12/157 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++  F  +  + +SL+  Y+ CG V ++R +F      D++ W SMIN    +G   E 
Sbjct: 576 LIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNEA 635

Query: 62  LKLFDKMPQRN----DVSWNSILGGLVRFGSVDDACRVFNQMP-KRSLVSW----VVLIS 112
           + LF KM   N     +++ ++L      G + +  R F  M     L  W      ++ 
Sbjct: 636 IALFKKMTDENVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVD 695

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
             +++   +EA    R   S+ ++P+S +  +LL AC
Sbjct: 696 LLSRSNSLEEAYQFVR---SMPIKPSSEVWCALLGAC 729


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 208/601 (34%), Positives = 309/601 (51%), Gaps = 92/601 (15%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFD--------------------------- 35
           ++N    D FV N+LI  Y+ CG + DA  VF+                           
Sbjct: 286 IRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAF 345

Query: 36  --------ESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM----PQRNDVSWNSILGGL 83
                   E+  LDV++W+++I GY + G   E L  F +M     + N V+  S+L   
Sbjct: 346 ELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSAC 405

Query: 84  VRFGSVDDA----------------------------------------CR-------VF 96
              G++                                           CR       +F
Sbjct: 406 ASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIF 465

Query: 97  NQMPKR--SLVSWVVLISGFAQNGRPKEALALFREM--QSLDLEPNSAILVSLLSACAQL 152
           + +P+R  ++V+W V+I G+AQ G   +AL +F EM  +   + PN+  +  +L ACA L
Sbjct: 466 DSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHL 525

Query: 153 GALDYGNWVYSYIQKKCIKLDSILCAA--LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
            AL  G  +++Y+ +      S+   A  LIDMY+KCG +D A  VF S   ++  ++TS
Sbjct: 526 AALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTS 585

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            + G  M+G   EA ++F+ M+  G  PD IS++ +L ACSH G V++G  YF  M   +
Sbjct: 586 MMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRRDY 645

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
            +    +HYAC++DLL R G L++A   I  MPM+P  VIW  LL ACRVH N E+ +  
Sbjct: 646 DVVASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWVALLSACRVHSNVELAEYA 705

Query: 331 GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHE 390
            N L+     +DG Y L+SNIY    + ++   +R+ M+K  IK+ PGCS ++       
Sbjct: 706 LNKLVNMKAENDGSYTLISNIYANARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTAS 765

Query: 391 FLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALA 450
           F  GDRSH  + EIY   E ++ +IK  GY  ET   + D+++EEK  ++  HSEKLALA
Sbjct: 766 FFVGDRSHPLSPEIYSLLERLIGRIKVMGYVPETNFALHDVDDEEKNNLLSEHSEKLALA 825

Query: 451 FGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEY 510
           +GL+ T PG  IRI KN+R+C DCHSA   +SK+   +I +RD   +HHF++GSCSC  Y
Sbjct: 826 YGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIIVRDSSRFHHFKNGSCSCGGY 885

Query: 511 W 511
           W
Sbjct: 886 W 886



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 118/421 (28%), Positives = 189/421 (44%), Gaps = 101/421 (23%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDL---DVVSWNSMINGYVRNGE 57
           ++  N F  +VFV N+L+  YS CG + DA  VFDE       DV+SWNS++  +V+   
Sbjct: 174 LICCNGFESNVFVCNALVAMYSRCGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSN 233

Query: 58  ILEGLKLFDKMP---------QRNDV---------------------------------- 74
               L+LF +M          +R+D+                                  
Sbjct: 234 PRTALELFSEMSMIVHEKATNERSDIISIVNILPACASLKALPQIKEIHSYAIRNGTFAD 293

Query: 75  --SWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQ- 131
               N+++    + GS++DA +VFN M  + +VSW  +++G+ Q+G    A  LF  M+ 
Sbjct: 294 AFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRK 353

Query: 132 ---SLDL-------------------------------EPNSAILVSLLSACAQLGALDY 157
               LD+                               EPNS  ++SLLSACA LGAL  
Sbjct: 354 ENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQ 413

Query: 158 GNWVYSYIQKKCI------------KLDSILCAALIDMYAKCGSIDLAMQVFHSYG--DK 203
           G  +++Y  KKC+              D ++  ALIDMY+KC S   A  +F S    ++
Sbjct: 414 GMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRER 473

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSK--GISPDSISYIAVLSACSHLGWVEKGFY 261
           +V  +T  I G A  G S +A ++F  M SK   ++P++ +   +L AC+HL  +  G  
Sbjct: 474 NVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQ 533

Query: 262 YFHSMFDVHGIKPELDHYA-CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
               +   H  +P +   A C++D+  + G ++ A N   SMP K + V W +++    +
Sbjct: 534 IHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMP-KRNEVSWTSMMSGYGM 592

Query: 321 H 321
           H
Sbjct: 593 H 593



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 142/306 (46%), Gaps = 49/306 (16%)

Query: 17  LIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG--------------- 61
           ++  Y  CG  +DA  V +       V WN ++  +++ G +                  
Sbjct: 89  VVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTKPD 148

Query: 62  -------LKLFDKMP-----------------QRNDVSWNSILGGLVRFGSVDDACRVFN 97
                  LK   ++P                 + N    N+++    R GS++DA  VF+
Sbjct: 149 HFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLVFD 208

Query: 98  QMPKRSL---VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS------AILVSLLSA 148
           ++ ++ +   +SW  +++   +   P+ AL LF EM  +  E  +        +V++L A
Sbjct: 209 EITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPA 268

Query: 149 CAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAY 208
           CA L AL     ++SY  +     D+ +C ALID YAKCGS++ A++VF+    KDV ++
Sbjct: 269 CASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSW 328

Query: 209 TSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD 268
            + + G   +G+   AFELFENM+ + I  D I++ AV++  +  G  ++    F  M  
Sbjct: 329 NAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMI- 387

Query: 269 VHGIKP 274
           + G +P
Sbjct: 388 LDGSEP 393



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 110/263 (41%), Gaps = 19/263 (7%)

Query: 68  MPQRNDVSWNSILGGLVR----FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEA 123
           +P  + VS  S+  G+V      G+  DA  V  ++     V W +L+    + G    A
Sbjct: 74  LPSHSYVSPKSLGTGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRA 133

Query: 124 LALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDM 183
           + +   M     +P+   L   L AC +L +   G  ++  I     + +  +C AL+ M
Sbjct: 134 IGVSCRMLRAGTKPDHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAM 193

Query: 184 YAKCGSIDLAMQVFHSY---GDKDVSAYTSAIFGLAMNGHSIEAFELFENM------KSK 234
           Y++CGS++ A  VF      G  DV ++ S +       +   A ELF  M      K+ 
Sbjct: 194 YSRCGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKAT 253

Query: 235 GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYAC--MVDLLGRAGLL 292
               D IS + +L AC+ L  + +     HS    +G     D + C  ++D   + G +
Sbjct: 254 NERSDIISIVNILPACASLKALPQ-IKEIHSYAIRNGTFA--DAFVCNALIDTYAKCGSM 310

Query: 293 EEAENFIASMPMKPDNVIWGTLL 315
            +A      M  K D V W  ++
Sbjct: 311 NDAVKVFNVMEFK-DVVSWNAMV 332


>gi|125578382|gb|EAZ19528.1| hypothetical protein OsJ_35094 [Oryza sativa Japonica Group]
          Length = 591

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 172/427 (40%), Positives = 269/427 (62%), Gaps = 9/427 (2%)

Query: 94  RVFNQMPKRSLVSWVVLISGFAQ---------NGRPKEALALFREMQSLDLEPNSAILVS 144
           RVF+ +    L +W  L+S +A+                L LF  M SL +EPN   LV+
Sbjct: 165 RVFDGIAHPDLPAWNALLSAYARLRARDVACATSAADAILELFVRMLSLAIEPNEITLVA 224

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           ++ AC +LGA+ +G W ++Y  K+ + ++ I+  AL++MYA CG +DLA QVF +  D+D
Sbjct: 225 VIGACGELGAVSHGVWAHTYAVKRRLAVNCIVATALVEMYAGCGRLDLAEQVFAAASDRD 284

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
              Y + + GLA++GH   A  L + M   G+  D ++ ++V+ AC+H G V++G  YF 
Sbjct: 285 TRCYNAMLHGLAVHGHGRAALSLLDRMHGAGVPVDGVTVLSVMCACAHAGLVDEGLDYFD 344

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
            M    GI+P ++HY CM+D+L RAG L  AE  I  M + P+  I+ +L+ AC +H   
Sbjct: 345 RMEIEFGIEPRIEHYGCMIDMLSRAGRLNNAEKLIHEMLIVPNAAIYRSLIRACGIHGKL 404

Query: 325 EMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIEL 384
           E+G+++   L+  + +  G ++L+SN Y  T + E+A++ RK M+   I + PG SL+++
Sbjct: 405 ELGEKMIAELMRLEPDDSGNHVLISNFYARTNRWEDAKKARKEMKSMGIDKNPGSSLVDI 464

Query: 385 DGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHS 444
           +GV+HEFL GD++H  ++EIY   EEI  ++   G    T S +FD+EEE+K   + YHS
Sbjct: 465 NGVLHEFLVGDKTHPASKEIYTMVEEIETRLIECGRRSSTSSALFDVEEEDKADTLSYHS 524

Query: 445 EKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGS 504
           E+LA+AF LI + PG+ IRI+KN+R+C+DCH + KLVS+V+ R+I +RDR  +HHF DG 
Sbjct: 525 ERLAIAFALIASNPGAPIRIIKNLRVCADCHESAKLVSRVYGREIVMRDRTRFHHFRDGV 584

Query: 505 CSCLEYW 511
           CSC ++W
Sbjct: 585 CSCGDFW 591



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 81/175 (46%), Gaps = 12/175 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
            VK   A +  V  +L++ Y+ CGR+  A  VF  + D D   +N+M++G   +G     
Sbjct: 245 AVKRRLAVNCIVATALVEMYAGCGRLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRAA 304

Query: 62  LKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMP-----KRSLVSWVVLIS 112
           L L D+M       + V+  S++      G VD+    F++M      +  +  +  +I 
Sbjct: 305 LSLLDRMHGAGVPVDGVTVLSVMCACAHAGLVDEGLDYFDRMEIEFGIEPRIEHYGCMID 364

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK 167
             ++ GR   A  L  EM    + PN+AI  SL+ AC   G L+ G  + + + +
Sbjct: 365 MLSRAGRLNNAEKLIHEML---IVPNAAIYRSLIRACGIHGKLELGEKMIAELMR 416


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/572 (35%), Positives = 308/572 (53%), Gaps = 61/572 (10%)

Query: 1   MVVKNS-FAYDVFVKNSLIQFYSVCGRVRDARWVFD--ESDDLDVVSWNSMINGYVRNGE 57
           +V+K++  A + FV ++L+  Y+   +V  AR VFD        +  WN+MI GY + G 
Sbjct: 307 VVLKDADLAANSFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGM 366

Query: 58  ILEGLKLFDKM-------PQRNDVS---------------------------------WN 77
             E L+LF +M       P    +S                                  N
Sbjct: 367 DEEALELFSRMEAEAGCAPSETTMSGVLPACARSEGFAGKEAMHGYVVKRGMAGNRFVQN 426

Query: 78  SILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQ------ 131
           +++    R G +D A R+F  +  R +VSW  LI+G    G   EA  L  EMQ      
Sbjct: 427 ALMDMYARLGEMDVARRIFAMIDPRDVVSWNTLITGCVVQGHAAEAFQLVTEMQLPSPSP 486

Query: 132 ----------SLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
                     +    PN+  L++LL  CA L A   G  ++ Y  +  ++ D  + +AL+
Sbjct: 487 SSSSTTEEGEAHRCMPNNITLMTLLPGCAALAAPARGKEIHGYAVRHALESDIAVGSALV 546

Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG-ISPDS 240
           DMYAKCG +  +  VF     ++V  +   I    M+G   EA  LF+ M + G  +P+ 
Sbjct: 547 DMYAKCGCLAASRAVFDRLPRRNVITWNVLIMAYGMHGLGDEAVALFDEMAAGGEATPNE 606

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
           +++IA L+ACSH G V++G   FH M   HG+KP  D +AC+VD+LGRAG L+EA + I 
Sbjct: 607 VTFIAALAACSHSGLVDRGLELFHGMERDHGVKPTPDLHACVVDVLGRAGRLDEAYSIIT 666

Query: 301 SM-PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGE 359
           SM P +     W +LLGACR+HRN E+G+     L E +      Y+LL NIY      +
Sbjct: 667 SMEPGEQQVSAWSSLLGACRLHRNVELGEVAAERLFELEPGEASHYVLLCNIYSAAGMWD 726

Query: 360 NAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYG 419
            +  VR  MR++ + + PGCS IELDG +H F+AG+ SH  + E++   + + ++++  G
Sbjct: 727 KSVAVRVRMRRQGVAKEPGCSWIELDGAIHRFMAGESSHPASAEVHAHMDALWERMRREG 786

Query: 420 YNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMK 479
           Y  +T  V+ D++E+EK  ++ YHSEKLA+AFGL+   PG+ IR+ KN+R+C+DCH A K
Sbjct: 787 YAPDTSCVLHDVDEDEKAAMLRYHSEKLAIAFGLLRAPPGAAIRVAKNLRVCNDCHEAAK 846

Query: 480 LVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            +SK+  R I +RD + +HHF DGSCSC +YW
Sbjct: 847 FMSKMVGRDIVLRDVRRFHHFRDGSCSCGDYW 878



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 93/376 (24%), Positives = 165/376 (43%), Gaps = 69/376 (18%)

Query: 12  FVKNSLIQFYSVCGRVRDARWVFDESDDL------DVVSWNSMINGYVRNGEILEGLK-L 64
           F  N+L+  Y+  G V DA+ +F  +         DVV+WN+MI+  V+ G   E ++ L
Sbjct: 211 FPFNALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTWNTMISLLVQGGRCAEAVEVL 270

Query: 65  FDKMP---QRNDVSWNSILGGLVRFG---------------------------------- 87
           +D +    + + V++ S L    R                                    
Sbjct: 271 YDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVVLKDADLAANSFVASALVDMYAG 330

Query: 88  --SVDDACRVFNQMPK--RSLVSWVVLISGFAQNGRPKEALALFREMQS-LDLEPNSAIL 142
              V  A RVF+ +P+  R L  W  +I G+AQ G  +EAL LF  M++     P+   +
Sbjct: 331 NEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEEALELFSRMEAEAGCAPSETTM 390

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
             +L ACA+         ++ Y+ K+ +  +  +  AL+DMYA+ G +D+A ++F     
Sbjct: 391 SGVLPACARSEGFAGKEAMHGYVVKRGMAGNRFVQNALMDMYARLGEMDVARRIFAMIDP 450

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMK----------------SKGISPDSISYIAV 246
           +DV ++ + I G  + GH+ EAF+L   M+                +    P++I+ + +
Sbjct: 451 RDVVSWNTLITGCVVQGHAAEAFQLVTEMQLPSPSPSSSSTTEEGEAHRCMPNNITLMTL 510

Query: 247 LSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKP 306
           L  C+ L    +G    H     H ++ ++   + +VD+  + G L  +      +P + 
Sbjct: 511 LPGCAALAAPARG-KEIHGYAVRHALESDIAVGSALVDMYAKCGCLAASRAVFDRLPRR- 568

Query: 307 DNVI-WGTLLGACRVH 321
            NVI W  L+ A  +H
Sbjct: 569 -NVITWNVLIMAYGMH 583



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 121/267 (45%), Gaps = 18/267 (6%)

Query: 71  RNDVSWNSILGGLVRFGSVDDACRVFNQMPKR------SLVSWVVLISGFAQNGRPKEAL 124
           R    +N++L    R G VDDA  +F             +V+W  +IS   Q GR  EA+
Sbjct: 208 RERFPFNALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTWNTMISLLVQGGRCAEAV 267

Query: 125 ALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC-IKLDSILCAALIDM 183
            +  +M SL + P+     S L AC++L  L  G  +++ + K   +  +S + +AL+DM
Sbjct: 268 EVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVVLKDADLAANSFVASALVDM 327

Query: 184 YAKCGSIDLAMQVFHSYGD--KDVSAYTSAIFGLAMNGHSIEAFELFENMKSK-GISPDS 240
           YA    +  A +VF    +  + +  + + I G A  G   EA ELF  M+++ G +P  
Sbjct: 328 YAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEEALELFSRMEAEAGCAPSE 387

Query: 241 ISYIAVLSACSHLGWVEKGFY---YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAEN 297
            +   VL AC+      +GF      H      G+         ++D+  R G ++ A  
Sbjct: 388 TTMSGVLPACAR----SEGFAGKEAMHGYVVKRGMAGNRFVQNALMDMYARLGEMDVARR 443

Query: 298 FIASMPMKPDNVIWGTLLGACRVHRNA 324
             A +  + D V W TL+  C V  +A
Sbjct: 444 IFAMIDPR-DVVSWNTLITGCVVQGHA 469



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 77/165 (46%), Gaps = 13/165 (7%)

Query: 102 RSLVSWVVLISGFAQNGRPKEALALFREMQSLDL-EPNSAILVSLLSACAQLGALD---Y 157
           R  VS+  LIS      + + AL   R+M +    + +S  LVS+L AC+ L   D    
Sbjct: 131 RDAVSYNSLISALCLFRQWERALDALRDMLAEGRHDVSSFTLVSVLLACSHLPGDDGRRL 190

Query: 158 GNWVYSYIQKKCI---KLDSILCAALIDMYAKCGSIDLAMQVFH------SYGDKDVSAY 208
           G   +++  K+       +     AL+ MYA+ G +D A  +F       S G  DV  +
Sbjct: 191 GREAHAFALKRGFLDEGRERFPFNALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTW 250

Query: 209 TSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL 253
            + I  L   G   EA E+  +M S G+ PD +++ + L ACS L
Sbjct: 251 NTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRL 295


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/552 (36%), Positives = 310/552 (56%), Gaps = 49/552 (8%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDE---SDDLDVVSWNSMINGYVRNGEI 58
           V++     + FV  +LI  Y  CG V DAR VF+E   S  L V  +N++I+GY  N ++
Sbjct: 76  VIRGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVC-YNALISGYTANSKV 134

Query: 59  LEGLKLFDKMPQRN------------------DVSW---------------------NSI 79
            +   +F +M +                    +  W                     NS 
Sbjct: 135 SDAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSF 194

Query: 80  LGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS 139
           +   ++ GSV+   R+F++MP + L++W  +ISG++QNG   + L LF +M+S  + P+ 
Sbjct: 195 ITMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDP 254

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
             LVS+LS+CA LGA   G  V   ++      +  L  ALI MYA+CG++  A  VF  
Sbjct: 255 FTLVSVLSSCAHLGAKKIGQEVGELVEANGFAPNVFLSNALISMYARCGNLAKARAVFDI 314

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
              K + ++T+ I    M+G       LF++M  +GI PD   ++ VLSACSH G  +KG
Sbjct: 315 MPVKSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKG 374

Query: 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACR 319
              F +M   + ++P  +HY+C+VDLLGRAG L+EA  FI SMP++PD  +WG LLGAC+
Sbjct: 375 LELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGALLGACK 434

Query: 320 VHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGC 379
           +H+N +M +     +IE +  + G Y+L+SNIY ++   E    +R  MR+R  ++ PG 
Sbjct: 435 IHKNVDMAELAFAKVIEFEPMNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGY 494

Query: 380 SLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETV 439
           S +E  G VH FLAGDRSHE+T+E+++  +E+   +     N++          EE  + 
Sbjct: 495 SYVEHKGKVHLFLAGDRSHEQTEEVHRMLDELETSVMELAGNMDCD------RGEEVSST 548

Query: 440 IGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHH 499
              HSE+LA+AFG++ + PG+ I ++KN+R+C DCH  +KLVSK+  R+  +RD   +H+
Sbjct: 549 TREHSERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFIKLVSKIVDRRFVVRDASRFHY 608

Query: 500 FEDGSCSCLEYW 511
           F+DG CSC +YW
Sbjct: 609 FKDGVCSCKDYW 620



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 12/158 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V  N FA +VF+ N+LI  Y+ CG +  AR VFD      +VSW +MI  Y  +G    
Sbjct: 279 LVEANGFAPNVFLSNALISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGET 338

Query: 61  GLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLI 111
           GL LFD M +R    +   +  +L      G  D    +F  M +   +      +  L+
Sbjct: 339 GLTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLV 398

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
               + GR  EA+     + S+ +EP+ A+  +LL AC
Sbjct: 399 DLLGRAGRLDEAMEF---IDSMPVEPDGAVWGALLGAC 433



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 88/203 (43%), Gaps = 3/203 (1%)

Query: 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSY 164
            SW V +   A      E+++L+R M      P++     +L +CA L     G  ++ +
Sbjct: 16  TSWNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCH 75

Query: 165 IQKKCIKLDSILCAALIDMYAKCGSIDLAMQVF--HSYGDKDVSAYTSAIFGLAMNGHSI 222
           + +   + +  +  ALI MY KCG ++ A +VF  + +  +    Y + I G   N    
Sbjct: 76  VIRGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVS 135

Query: 223 EAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACM 282
           +A  +F  MK  G+S DS++ + ++  C+   ++  G    H      G   E+      
Sbjct: 136 DAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLG-RSLHGECVKGGTYSEVAVLNSF 194

Query: 283 VDLLGRAGLLEEAENFIASMPMK 305
           + +  + G +E        MP+K
Sbjct: 195 ITMYMKCGSVESGRRLFDEMPVK 217


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/552 (35%), Positives = 317/552 (57%), Gaps = 43/552 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K  +    +++  L+ FY  C  + DAR V DE  + +VVSW +MI+ Y + G   E 
Sbjct: 77  MIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEA 136

Query: 62  LKLFDKMPQRND-------------------------------VSWN---------SILG 81
           L +F +M  R+D                               V WN         S+L 
Sbjct: 137 LSVFAEM-MRSDGKPNEFTFATVLTSCIRASGLALGKQIHGLIVKWNYDSHIFVGSSLLD 195

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G +++A  +F  +P+R +VS   +I+G+AQ G  +EAL +F+ +QS  + PN   
Sbjct: 196 MYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVT 255

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
             SLL+A + L  LD+G   + ++ ++ +   ++L  +LIDMY+KCG++  A ++F +  
Sbjct: 256 YASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYAQRLFDNMP 315

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMK-SKGISPDSISYIAVLSACSHLGWVEKGF 260
           ++   ++ + + G + +G   E  ELF  M+  K + PD+++ +AVLS CSH    + G 
Sbjct: 316 ERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGKMEDTGL 375

Query: 261 YYFHSMF-DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACR 319
             +  M    +GIKP+ +HY C+VD+LGRAG ++EA  FI  MP KP   + G+LLGACR
Sbjct: 376 SIYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACR 435

Query: 320 VHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGC 379
           VH + ++G+ +G+ LIE +  + G Y++LSN+Y    + E+   VR  M ++ + + PG 
Sbjct: 436 VHLSVDIGEYVGHRLIEIEPENAGNYVILSNLYASAGRWEDVNNVRAMMMQKAVTKEPGR 495

Query: 380 SLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETV 439
           S I+ +  +H F A DR+H + +E+    +EI  K+K  GY  +   V++D++EE+KE +
Sbjct: 496 SWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDISCVLYDVDEEQKEKM 555

Query: 440 IGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHH 499
           +  HSEKLAL FGLI T  G  IR+ KN+RIC DCH+  K+ SKVF+R++S+RD+  +H 
Sbjct: 556 LLGHSEKLALTFGLITTGEGIPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQ 615

Query: 500 FEDGSCSCLEYW 511
              G CSC +YW
Sbjct: 616 IVKGICSCGDYW 627



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 87/348 (25%), Positives = 155/348 (44%), Gaps = 80/348 (22%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++VK ++   +FV +SL+  Y+  G++ +AR +F+   + DVVS  ++I GY + G   E
Sbjct: 177 LIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEE 236

Query: 61  GLKLFDKMP----QRNDVSWNSILGGL--------------------------------- 83
            L++F ++     + N V++ S+L  L                                 
Sbjct: 237 ALEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLID 296

Query: 84  --VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD-LEPNSA 140
              + G++  A R+F+ MP+R+ +SW  ++ G++++G  +E L LFR M+    ++P++ 
Sbjct: 297 MYSKCGNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAV 356

Query: 141 ILVSLLSACAQLGALDYGNWVYSYI--QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH 198
            L+++LS C+     D G  +Y  +   +  IK D+     ++DM  + G ID       
Sbjct: 357 TLLAVLSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRID------- 409

Query: 199 SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEK 258
                                   EAFE  + M SK   P +    ++L AC     V+ 
Sbjct: 410 ------------------------EAFEFIKRMPSK---PTAGVLGSLLGACRVHLSVDI 442

Query: 259 GFYYFHSMFDVHGIKPE-LDHYACMVDLLGRAGLLEEAENFIASMPMK 305
           G Y  H + +   I+PE   +Y  + +L   AG  E+  N  A M  K
Sbjct: 443 GEYVGHRLIE---IEPENAGNYVILSNLYASAGRWEDVNNVRAMMMQK 487



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 97/216 (44%), Gaps = 17/216 (7%)

Query: 94  RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153
           R F+  P  S++     IS    NGR +EAL    EM  L  E       +LL+AC    
Sbjct: 10  RSFSSSPN-SVLQTFRPISQLCSNGRLQEALL---EMVMLGPEIGFHCYDALLNACLDKR 65

Query: 154 ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIF 213
           AL  G  V++++ K      + L   L+  Y KC  ++ A +V     +K+V ++T+ I 
Sbjct: 66  ALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMIS 125

Query: 214 GLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG-- 271
             +  GHS EA  +F  M      P+  ++  VL++C     +  G         +HG  
Sbjct: 126 RYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALG-------KQIHGLI 178

Query: 272 IKPELDHY----ACMVDLLGRAGLLEEAENFIASMP 303
           +K   D +    + ++D+  +AG +EEA      +P
Sbjct: 179 VKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLP 214


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 212/586 (36%), Positives = 318/586 (54%), Gaps = 82/586 (13%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVV------------------ 43
           ++K  F  DVFV + L+  Y+  G + DA+  FDE  + +VV                  
Sbjct: 164 ILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEES 223

Query: 44  -------------SWNSMINGYVRNGEILEGLKLFDKMP----QRNDVSWNSIL---GGL 83
                        SW  MI G ++NG   E L +F +M       +  ++ S+L   G L
Sbjct: 224 QRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSL 283

Query: 84  VRFG--------------------------------SVDDACRVFNQMPKRSLVSWVVLI 111
           +  G                                S+  A  VF +MP+++++SW  ++
Sbjct: 284 LALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAML 343

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK 171
            G+ QNG  +EA+ +F EMQ   +EP+   L S++S+CA L +L+ G       Q  C  
Sbjct: 344 VGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEG------AQFHCRA 397

Query: 172 LDSILCA------ALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
           L S L +      ALI +Y KCGS + + ++F     +D  ++T+ + G A  G + E  
Sbjct: 398 LVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETI 457

Query: 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL 285
            LFE M + G+ PD +++I VLSACS  G VEKG  YF SM   HGI P +DH  C++DL
Sbjct: 458 GLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDL 517

Query: 286 LGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRY 345
           LGRAG LEEA NFI +MP  PD V W TLL +CRVH + E+G+   + LI  +  +   Y
Sbjct: 518 LGRAGRLEEARNFINNMPCHPDVVGWATLLSSCRVHGDMEIGKWAADSLIALEPQNPASY 577

Query: 346 ILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIY 405
           +LLS++Y    K +   ++R+ MR +++++ PG S I+  G VH F A D+S     +IY
Sbjct: 578 VLLSSLYASKGKWDKVAQLRRGMRDKRVRKEPGYSWIKYKGKVHVFSADDQSSPFLGQIY 637

Query: 406 QFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIV 465
              E++  K+   GY  +  SV+ D+EE EK  ++ +HSEKLA+AFGLI   PG  IR++
Sbjct: 638 AELEKLNYKMIEEGYVPDMSSVLHDVEESEKIKMLNHHSEKLAIAFGLIFVPPGLPIRVI 697

Query: 466 KNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           KN+R+C DCH+A K +SK+ +R+I +RD   +H F+DG+CSC ++W
Sbjct: 698 KNLRVCGDCHNATKFISKITQREILVRDAVRFHLFKDGTCSCGDFW 743



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 155/334 (46%), Gaps = 39/334 (11%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +++K     + F+ N+LI  Y   G +  A  VFD     ++ SWN++++ Y + G + +
Sbjct: 30  LILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIPQPNLFSWNTILSVYSKLGLLSQ 89

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV--------SWVVLIS 112
             ++F+ MP R+ VSWN  + G   +GS  DA RV+  M K + +        + ++L S
Sbjct: 90  MQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLKDAAMNLNRITFSTMLILCS 149

Query: 113 GFAQNGRPKEALALFREM--QSLDLEPNSAILV--SLLSACAQLGALDYGNWVYSYIQKK 168
            F         + L R++  Q L     S + V   L+    +LG +      +  + ++
Sbjct: 150 KF-------RCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPER 202

Query: 169 CIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELF 228
               + ++C  +I    +CG I+ + ++F    ++D  ++T  I GL  NG   EA ++F
Sbjct: 203 ----NVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMF 258

Query: 229 ENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHY------ACM 282
             M+  G + D  ++ +VL+AC  L  + +G         +H      DH       + +
Sbjct: 259 REMRLAGFAMDQFTFGSVLTACGSLLALGEG-------KQIHAYVIRTDHKDNVFVGSAL 311

Query: 283 VDLLGRAGLLEEAENFIASMPMKPDNVI-WGTLL 315
           VD+  +   ++ AE     MP K  NVI W  +L
Sbjct: 312 VDMYSKCRSIKSAETVFKRMPQK--NVISWTAML 343


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 184/500 (36%), Positives = 303/500 (60%), Gaps = 4/500 (0%)

Query: 16  SLIQFYSVCGRVRDARWVFDESDDLDVVSWNSM----INGYVRNGEILEGLKLFDKMPQR 71
           S+++  SV G +   R +  E   +   S  S+     N Y + G I E  ++F KM  +
Sbjct: 391 SILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENK 450

Query: 72  NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQ 131
           N V+W S+L   ++ G +  A +VF++M  R++VSW ++I+G+AQ+G   +   L   M+
Sbjct: 451 NVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMK 510

Query: 132 SLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSID 191
               +P+   ++S+L AC  L AL+ G  V++   K  ++ D+++  +LI MY+KCG + 
Sbjct: 511 VEGFQPDRVTIISILEACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVT 570

Query: 192 LAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS 251
            A  VF    ++D  A+ + + G   +G   EA +LF+ M  + + P+ I++ AV+SAC 
Sbjct: 571 EARTVFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACG 630

Query: 252 HLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIW 311
             G V++G   F  M +   +KP   HY CMVDLLGRAG L+EAE FI  MP +PD  +W
Sbjct: 631 RAGLVQEGREIFRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVW 690

Query: 312 GTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKR 371
             LLGAC+ H N ++ +   + ++  + ++   Y+ LSNIY +  + +++ +VRK M  +
Sbjct: 691 HALLGACKSHDNVQLAEWAAHHILRLEPSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDK 750

Query: 372 KIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDI 431
            +K+  G S IE+DG +H F+A D +H +   I+   E + K++K  GY  + R V+ D+
Sbjct: 751 GLKKDRGESSIEIDGRIHTFVAEDCAHPEIDSIHAELEMLTKEMKEAGYTPDMRFVLHDV 810

Query: 432 EEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISI 491
           +E +KE  + +HSEKLA+A+GL+ T PG+ IRI+KN+R+C DCH+A K +SK+ KR+I  
Sbjct: 811 DEVQKERALCHHSEKLAIAYGLLKTPPGTPIRIMKNLRVCGDCHTATKFISKIRKREIVA 870

Query: 492 RDRKHYHHFEDGSCSCLEYW 511
           RD   +H+F++G+CSC ++W
Sbjct: 871 RDANRFHYFKNGTCSCGDFW 890



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 99/353 (28%), Positives = 169/353 (47%), Gaps = 46/353 (13%)

Query: 7   FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFD 66
            A D+++ NSLI FYS  G V     VF      DVV+W+SMI  Y  N    +    F+
Sbjct: 109 LAIDIYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFE 168

Query: 67  KMP----QRNDVSWNSILGGLVRF-----------------------------------G 87
           +M     + N +++ SIL     +                                   G
Sbjct: 169 RMKDANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCG 228

Query: 88  SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLS 147
            +  AC +F +M +R++VSW  +I   AQ+ +  EA  L+ +M    + PN+   VSLL+
Sbjct: 229 EISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLN 288

Query: 148 ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSA 207
           +C    AL+ G  ++S+I ++ ++ D ++  ALI MY KC  I  A + F     +DV +
Sbjct: 289 SCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVIS 348

Query: 208 YTSAIFGLAMNGHS-----IEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           +++ I G A +G+       E F+L E M+ +G+ P+ ++++++L ACS  G +E+G   
Sbjct: 349 WSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQG-RQ 407

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
            H+     G + +      + ++  + G + EAE   + M  K + V W +LL
Sbjct: 408 IHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENK-NVVAWASLL 459



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 101/206 (49%), Gaps = 4/206 (1%)

Query: 118 GRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILC 177
           GR KEA+ L   ++   L  NS     ++  CA+L   + G  V+  + +  + +D  L 
Sbjct: 57  GRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLG 116

Query: 178 AALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGIS 237
            +LI+ Y+K G +    QVF     +DV  ++S I   A N H  +AF+ FE MK   I 
Sbjct: 117 NSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIE 176

Query: 238 PDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAEN 297
           P+ I+++++L AC++   +EK     H++    G++ ++     ++ +  + G +  A  
Sbjct: 177 PNRITFLSILKACNNYSMLEKA-REIHTVVKASGMETDVAVATALITMYSKCGEISLACE 235

Query: 298 FIASMPMKPDNVI-WGTLLGACRVHR 322
                 MK  NV+ W  ++ A   HR
Sbjct: 236 IF--QKMKERNVVSWTAIIQANAQHR 259


>gi|226530803|ref|NP_001148047.1| LOC100281656 [Zea mays]
 gi|195615502|gb|ACG29581.1| selenium-binding protein-like [Zea mays]
          Length = 597

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 184/444 (41%), Positives = 274/444 (61%), Gaps = 3/444 (0%)

Query: 71  RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM 130
           R+ +   S++      G  D A ++F++MP R  V+W VLI+ +A+N R K+AL LF EM
Sbjct: 154 RDALLATSLMRCYANRGDGDGARKLFDEMPVRDAVAWNVLITCYARNRRTKDALKLFEEM 213

Query: 131 QSLDLE--PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCG 188
           +  D E  P+    + LL AC+ LGALD+G  V++Y ++     +  +  +LI MY +CG
Sbjct: 214 RGKDSESEPDDVTCILLLQACSSLGALDFGEQVWAYAEEHGYGGELKVRNSLITMYLRCG 273

Query: 189 SIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248
            +D A +VF     K V  +T+ I GLA NG   +A  +FE M    ++PD  ++  VLS
Sbjct: 274 CVDKAYRVFSGTPQKSVVTWTAMISGLAANGFGNDAISVFEEMIRSDVAPDEQTFTGVLS 333

Query: 249 ACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS-MPMKPD 307
           ACSH G V++GF +F  M   +G+KP + HY C+VDL+GRAGLL+EA  F+ + M + PD
Sbjct: 334 ACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAYEFVTNEMKVAPD 393

Query: 308 NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKT 367
             IW TLLGACR+H + ++G+R+   LIE      G Y+LL N Y    +     E+RK 
Sbjct: 394 ATIWRTLLGACRIHGHVDLGERVIGNLIELKAQQAGDYVLLLNTYAAVGEWSKVSEIRKL 453

Query: 368 MRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSV 427
           M++  I+  PGC+ +E +G VHEF+A D +H +  EIY+   EI K+++  GY     S 
Sbjct: 454 MQEEGIQTTPGCTTVEHNGTVHEFIADDDAHPRKVEIYENLSEIYKQLRIAGYVPNVSSE 513

Query: 428 MFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKR 487
           + D++ E KE+ + YHSEKLA+AF L+ T     IR+ KN+R+C DCH+  K+ S +++R
Sbjct: 514 LHDLDSEGKESALTYHSEKLAIAFALLVTPQHRPIRLAKNLRVCVDCHNFTKMFSAIYRR 573

Query: 488 KISIRDRKHYHHFEDGSCSCLEYW 511
            + +RDR  +HHF+ G CSC +YW
Sbjct: 574 IVIVRDRTRFHHFQGGKCSCNDYW 597



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 128/301 (42%), Gaps = 77/301 (25%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VV      D  +  SL++ Y+  G    AR +FDE    D V+WN +I  Y RN    + 
Sbjct: 147 VVAEGHLRDALLATSLMRCYANRGDGDGARKLFDEMPVRDAVAWNVLITCYARNRRTKDA 206

Query: 62  LKLFDKM------PQRNDVS--------------------W---------------NSIL 80
           LKLF++M       + +DV+                    W               NS++
Sbjct: 207 LKLFEEMRGKDSESEPDDVTCILLLQACSSLGALDFGEQVWAYAEEHGYGGELKVRNSLI 266

Query: 81  GGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
              +R G VD A RVF+  P++S+V+W  +ISG A NG   +A+++F EM   D+ P+  
Sbjct: 267 TMYLRCGCVDKAYRVFSGTPQKSVVTWTAMISGLAANGFGNDAISVFEEMIRSDVAPDEQ 326

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQ-KKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
               +LSAC+  G +D G   +  ++ +  +K +      ++D+  + G +D        
Sbjct: 327 TFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLD-------- 378

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFEN-MKSKGISPDSISYIAVLSACSHLGWVEK 258
                                  EA+E   N MK   ++PD+  +  +L AC   G V+ 
Sbjct: 379 -----------------------EAYEFVTNEMK---VAPDATIWRTLLGACRIHGHVDL 412

Query: 259 G 259
           G
Sbjct: 413 G 413


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/548 (37%), Positives = 318/548 (58%), Gaps = 39/548 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFD-ESDDLDVVSWNSMINGYVRNGEILE 60
           V+K+ F     V  +L   YS CG + DA  +F   +   +VVSW ++I+G ++NG+I  
Sbjct: 328 VLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPL 387

Query: 61  GLKLFDKMPQ----RNDVSWNS-------------------------------ILGGLVR 85
            + LF +M +     N+ ++++                               +L    +
Sbjct: 388 AVVLFSRMREDRVMPNEFTYSAMLKASLSILPPQIHAQVIKTNYQHIPSVGTALLASYSK 447

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
           FGS +DA  +F  + ++ +V+W  ++S  AQ G  + A  LF +M    ++PN   + S+
Sbjct: 448 FGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSV 507

Query: 146 LSACAQLGA-LDYGNWVYSYIQKKCIKLDSI-LCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           + ACA   A +D G   ++ I  K    D+I + +AL+ MY++ G+ID A  VF    D+
Sbjct: 508 IDACACPSAGVDQGRQFHA-ISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTDR 566

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           D+ ++ S I G A +G+S++A E F  M++ GI  D ++++AV+  C+H G V +G  YF
Sbjct: 567 DLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYF 626

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
            SM   H I P ++HYACMVDL  RAG L+E  + I  MP     ++W TLLGACRVH+N
Sbjct: 627 DSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHKN 686

Query: 324 AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE 383
            E+G+   + L+  + +    Y+LLSNIY    K +  +EVRK M  RK+K+  GCS I+
Sbjct: 687 VELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQ 746

Query: 384 LDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYH 443
           +   VH F+A D+SH  + +IY+  + I+ ++K  GY+  T  V+ DI E++KE ++  H
Sbjct: 747 IKNKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQDGYSPNTSFVLHDIAEDQKEAMLVAH 806

Query: 444 SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
           SE+LALAFGLI T PG+ ++IVKN+R+C DCH  MK+VS +  R+I +RD   +HHF  G
Sbjct: 807 SERLALAFGLIATPPGTPLQIVKNLRVCGDCHMVMKMVSMIEDREIIMRDCSRFHHFNGG 866

Query: 504 SCSCLEYW 511
           +CSC ++W
Sbjct: 867 ACSCGDFW 874



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 125/250 (50%), Gaps = 4/250 (1%)

Query: 71  RNDVSW-NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE 129
           R +VS   S++   ++ GSV +   VF  MPK+++V+W  L++G A      E +ALF  
Sbjct: 132 RGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFR 191

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
           M++  + PN     S+LSA A  GALD G  V++   K   +    +C +L++MYAKCG 
Sbjct: 192 MRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGL 251

Query: 190 IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
           ++ A  VF+    +D+ ++ + + GL +N   +EA +LF   ++        +Y  V+  
Sbjct: 252 VEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKL 311

Query: 250 CSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNV 309
           C++L  +       HS    HG     +    + D   + G L +A N I SM     NV
Sbjct: 312 CANLKQLALA-RQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALN-IFSMTTGSRNV 369

Query: 310 I-WGTLLGAC 318
           + W  ++  C
Sbjct: 370 VSWTAIISGC 379



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 121/280 (43%), Gaps = 40/280 (14%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           +V    SL+  Y  CG V +   VF+     +VV+W S++ G        E + LF +M 
Sbjct: 134 EVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMR 193

Query: 70  QR----NDVSWNSILGGL----------------VRFGS-------------------VD 90
                 N  ++ S+L  +                V+FG                    V+
Sbjct: 194 AEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVE 253

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           DA  VFN M  R +VSW  L++G   N    EAL LF E ++   +   +   +++  CA
Sbjct: 254 DAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCA 313

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH-SYGDKDVSAYT 209
            L  L     ++S + K    L   +  AL D Y+KCG +  A+ +F  + G ++V ++T
Sbjct: 314 NLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWT 373

Query: 210 SAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
           + I G   NG    A  LF  M+   + P+  +Y A+L A
Sbjct: 374 AIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKA 413



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 151/352 (42%), Gaps = 47/352 (13%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLF----- 65
           VFV NSL+  Y+ CG V DA+ VF+  +  D+VSWN+++ G   N   LE L+LF     
Sbjct: 236 VFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRA 295

Query: 66  --DKMPQRNDVSWNSILGGLVRF--------------------------------GSVDD 91
              KM Q    +   +   L +                                 G + D
Sbjct: 296 TMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELAD 355

Query: 92  ACRVFNQMP-KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           A  +F+     R++VSW  +ISG  QNG    A+ LF  M+   + PN     ++L A  
Sbjct: 356 ALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASL 415

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
            +        +++ + K   +    +  AL+  Y+K GS + A+ +F     KDV A+++
Sbjct: 416 SI----LPPQIHAQVIKTNYQHIPSVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSA 471

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS-HLGWVEKGFYYFHSMFDV 269
            +   A  G    A  LF  M  +GI P+  +  +V+ AC+     V++G   FH++   
Sbjct: 472 MLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQG-RQFHAISIK 530

Query: 270 HGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           +     +   + +V +  R G ++ A+  +       D V W +++     H
Sbjct: 531 YRYHDAICVSSALVSMYSRKGNIDSAQ-IVFERQTDRDLVSWNSMISGYAQH 581


>gi|414870414|tpg|DAA48971.1| TPA: selenium-binding protein-like protein [Zea mays]
          Length = 611

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 184/444 (41%), Positives = 274/444 (61%), Gaps = 3/444 (0%)

Query: 71  RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM 130
           R+ +   S++      G  D A ++F++MP R  V+W VLI+ +A+N R K+AL LF EM
Sbjct: 168 RDALLATSLMRCYANRGDGDGARKLFDEMPVRDAVAWNVLITCYARNRRTKDALKLFEEM 227

Query: 131 QSLDLE--PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCG 188
           +  D E  P+    + LL AC+ LGALD+G  V++Y ++     +  +  +LI MY +CG
Sbjct: 228 RGKDSESEPDDVTCILLLQACSSLGALDFGEQVWAYAEEHGYGGELKVRNSLITMYLRCG 287

Query: 189 SIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248
            +D A +VF     K V  +T+ I GLA NG   +A  +FE M    ++PD  ++  VLS
Sbjct: 288 CVDKAYRVFSGTPQKSVVTWTAMISGLAANGFGNDAISVFEEMIRSDVAPDEQTFTGVLS 347

Query: 249 ACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS-MPMKPD 307
           ACSH G V++GF +F  M   +G+KP + HY C+VDL+GRAGLL+EA  F+ + M + PD
Sbjct: 348 ACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAYEFVTNEMKVAPD 407

Query: 308 NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKT 367
             IW TLLGACR+H + ++G+R+   LIE      G Y+LL N Y    +     E+RK 
Sbjct: 408 ATIWRTLLGACRIHGHVDLGERVIGNLIELKAQQAGDYVLLLNTYAAVGEWSKVSEIRKL 467

Query: 368 MRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSV 427
           M++  I+  PGC+ +E +G VHEF+A D +H +  EIY+   EI K+++  GY     S 
Sbjct: 468 MQEEGIQTTPGCTTVEHNGTVHEFIADDDAHPRKVEIYENLSEIYKQLRIAGYVPNVSSE 527

Query: 428 MFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKR 487
           + D++ E KE+ + YHSEKLA+AF L+ T     IR+ KN+R+C DCH+  K+ S +++R
Sbjct: 528 LHDLDSEGKESALTYHSEKLAIAFALLVTPQHRPIRLAKNLRVCVDCHNFTKMFSAIYRR 587

Query: 488 KISIRDRKHYHHFEDGSCSCLEYW 511
            + +RDR  +HHF+ G CSC +YW
Sbjct: 588 IVIVRDRTRFHHFQGGKCSCNDYW 611



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 128/301 (42%), Gaps = 77/301 (25%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VV      D  +  SL++ Y+  G    AR +FDE    D V+WN +I  Y RN    + 
Sbjct: 161 VVAEGHLRDALLATSLMRCYANRGDGDGARKLFDEMPVRDAVAWNVLITCYARNRRTKDA 220

Query: 62  LKLFDKM------PQRNDVS--------------------W---------------NSIL 80
           LKLF++M       + +DV+                    W               NS++
Sbjct: 221 LKLFEEMRGKDSESEPDDVTCILLLQACSSLGALDFGEQVWAYAEEHGYGGELKVRNSLI 280

Query: 81  GGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
              +R G VD A RVF+  P++S+V+W  +ISG A NG   +A+++F EM   D+ P+  
Sbjct: 281 TMYLRCGCVDKAYRVFSGTPQKSVVTWTAMISGLAANGFGNDAISVFEEMIRSDVAPDEQ 340

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQ-KKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
               +LSAC+  G +D G   +  ++ +  +K +      ++D+  + G +D        
Sbjct: 341 TFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLD-------- 392

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFEN-MKSKGISPDSISYIAVLSACSHLGWVEK 258
                                  EA+E   N MK   ++PD+  +  +L AC   G V+ 
Sbjct: 393 -----------------------EAYEFVTNEMK---VAPDATIWRTLLGACRIHGHVDL 426

Query: 259 G 259
           G
Sbjct: 427 G 427


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 208/595 (34%), Positives = 310/595 (52%), Gaps = 86/595 (14%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGY---------- 52
           V+N    DVFV N+L+  Y+ C ++ +A  VF+     DVVSWN+M+ GY          
Sbjct: 261 VRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSAL 320

Query: 53  -------------------------VRNGEILEGLKLFDKMP----QRNDVSWNSILGGL 83
                                     + G   E L +F +M     + N V+  S+L G 
Sbjct: 321 SLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGC 380

Query: 84  VRFGSV----------------------DDACRVFNQM---------------------- 99
              G++                      +D   V N +                      
Sbjct: 381 ASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEG 440

Query: 100 PKRSLVSWVVLISGFAQNGRPKEALALFREM--QSLDLEPNSAILVSLLSACAQLGALDY 157
             +++V+W V+I G+AQ+G   +AL LF ++  Q   L+PN+  L   L ACA+LG L  
Sbjct: 441 KDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRL 500

Query: 158 GNWVYSYIQKKCIKLDSILCA-ALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLA 216
           G  +++Y  +   + + +     LIDMY+K G ID A  VF +   ++V ++TS + G  
Sbjct: 501 GRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGYG 560

Query: 217 MNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPEL 276
           M+G   EA  LF+ M+  G + D I+++ VL ACSH G V++G  YFH M    GI P  
Sbjct: 561 MHGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGA 620

Query: 277 DHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIE 336
           +HYACMVDLLGRAG L EA   I +M M+P  V+W  LL A R+H N E+G+   + L E
Sbjct: 621 EHYACMVDLLGRAGRLNEAMELIKNMSMEPTAVVWVALLSASRIHANIELGEYAASKLTE 680

Query: 337 SDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDR 396
               +DG Y LLSN+Y    + ++   +R  M+   I++ PGCS I+       F  GDR
Sbjct: 681 LGAENDGSYTLLSNLYANARRWKDVARIRSLMKHTGIRKRPGCSWIQGKKSTTTFFVGDR 740

Query: 397 SHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICT 456
           SH ++++IY    +++K+IK+ GY  +T   + D+++EEK  ++  HSEKLA+A+G++ T
Sbjct: 741 SHPESEQIYNLLLDLIKRIKDMGYVPQTSFALHDVDDEEKGDLLFEHSEKLAVAYGILTT 800

Query: 457 KPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            PG  IRI KN+RIC DCHSA+  +S +   +I +RD   +HHF+ GSCSC  YW
Sbjct: 801 APGQPIRIHKNLRICGDCHSALTYISMIIDHEIVLRDSSRFHHFKKGSCSCRSYW 855



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 115/417 (27%), Positives = 186/417 (44%), Gaps = 94/417 (22%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDL---DVVSWNSMINGYVRNGE 57
           +V  N    +VF+ NS++  Y  CG + DA  +FDE  +    D+VSWNS++  YV+ G+
Sbjct: 152 IVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQ 211

Query: 58  ILEGLKLFDKMPQR-------NDVSWNSIL----------------GGLVRFGSVDD--- 91
               L++  +M          + ++  +IL                G  VR G VDD   
Sbjct: 212 SRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFV 271

Query: 92  ----------------ACRVFNQMPKRSLVS----------------------------- 106
                           A +VF  + K+ +VS                             
Sbjct: 272 GNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDI 331

Query: 107 ------WVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNW 160
                 W  +I+G+AQ G   EAL +FR+MQ   LEPN   L SLLS CA +GAL YG  
Sbjct: 332 KLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQ 391

Query: 161 VYSYIQKKCIKL-------DSILCAALIDMYAKCGSIDLAMQVFHSY--GDKDVSAYTSA 211
            ++Y+ K  + L       D ++   LIDMYAKC S  +A  +F S    DK+V  +T  
Sbjct: 392 THAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVM 451

Query: 212 IFGLAMNGHSIEAFELFENM--KSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDV 269
           I G A +G + +A +LF  +  +   + P++ +    L AC+ LG +  G    H+    
Sbjct: 452 IGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLG-RQLHAYALR 510

Query: 270 HGIKPELDHYA-CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAE 325
           +  + E+ +   C++D+  ++G ++ A     +M ++ + V W +L+    +H   E
Sbjct: 511 NENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLR-NVVSWTSLMTGYGMHGRGE 566



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/244 (21%), Positives = 110/244 (45%), Gaps = 10/244 (4%)

Query: 80  LGGLVRFGSVDDACRVFNQM-PKRSLVSW-VVLISGFAQNGRPKEALALFREMQSLDLEP 137
           +G  +  G+  +A  +  ++ P  S V W   LI    + G   + L  + +MQ L   P
Sbjct: 66  VGAYIECGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLP 125

Query: 138 NSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVF 197
           +      +L AC ++ +L +G  V++ +    +  +  +C +++ MY +CG++D A Q+F
Sbjct: 126 DHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMF 185

Query: 198 HSYGDK---DVSAYTSAIFGLAMNGHSIEAFEL---FENMKSKGISPDSISYIAVLSACS 251
               ++   D+ ++ S +      G S  A  +     N  S  + PD+I+ + +L AC+
Sbjct: 186 DEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACA 245

Query: 252 HLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIW 311
            +  ++ G    H     +G+  ++     +V +  +   + EA      +  K D V W
Sbjct: 246 SVFALQHG-KQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIK-KKDVVSW 303

Query: 312 GTLL 315
             ++
Sbjct: 304 NAMV 307


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/548 (37%), Positives = 318/548 (58%), Gaps = 39/548 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFD-ESDDLDVVSWNSMINGYVRNGEILE 60
           V+K+ F     V  +L   YS CG + DA  +F   +   +VVSW ++I+G ++NG+I  
Sbjct: 328 VLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPL 387

Query: 61  GLKLFDKMPQ----RNDVSWNS-------------------------------ILGGLVR 85
            + LF +M +     N+ ++++                               +L    +
Sbjct: 388 AVVLFSRMREDRVMPNEFTYSAMLKASLSILPPQIHAQVIKTNYQHIPFVGTALLASYSK 447

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
           FGS +DA  +F  + ++ +V+W  ++S  AQ G  + A  LF +M    ++PN   + S+
Sbjct: 448 FGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSV 507

Query: 146 LSACAQLGA-LDYGNWVYSYIQKKCIKLDSI-LCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           + ACA   A +D G   ++ I  K    D+I + +AL+ MY++ G+ID A  VF    D+
Sbjct: 508 IDACACPSAGVDQGRQFHA-ISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTDR 566

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           D+ ++ S I G A +G+S++A E F  M++ GI  D ++++AV+  C+H G V +G  YF
Sbjct: 567 DLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYF 626

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
            SM   H I P ++HYACMVDL  RAG L+E  + I  MP     ++W TLLGACRVH+N
Sbjct: 627 DSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHKN 686

Query: 324 AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE 383
            E+G+   + L+  + +    Y+LLSNIY    K +  +EVRK M  RK+K+  GCS I+
Sbjct: 687 VELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQ 746

Query: 384 LDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYH 443
           +   VH F+A D+SH  + +IY+  + I+ ++K  GY+  T  V+ DI E++KE ++  H
Sbjct: 747 IKNKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQDGYSPNTSFVLHDIAEDQKEAMLVAH 806

Query: 444 SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
           SE+LALAFGLI T PG+ ++IVKN+R+C DCH  MK+VS +  R+I +RD   +HHF  G
Sbjct: 807 SERLALAFGLIATPPGTPLQIVKNLRVCGDCHMVMKMVSMIEDREIIMRDCSRFHHFNGG 866

Query: 504 SCSCLEYW 511
           +CSC ++W
Sbjct: 867 ACSCGDFW 874



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 125/250 (50%), Gaps = 4/250 (1%)

Query: 71  RNDVSW-NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE 129
           R +VS   S++   ++ GSV +   VF  MPK+++V+W  L++G A      E +ALF  
Sbjct: 132 RGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFR 191

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
           M++  + PN     S+LSA A  GALD G  V++   K   +    +C +L++MYAKCG 
Sbjct: 192 MRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGL 251

Query: 190 IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
           ++ A  VF+    +D+ ++ + + GL +N   +EA +LF   ++        +Y  V+  
Sbjct: 252 VEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKL 311

Query: 250 CSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNV 309
           C++L  +       HS    HG     +    + D   + G L +A N I SM     NV
Sbjct: 312 CANLKQLALA-RQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALN-IFSMTTGSRNV 369

Query: 310 I-WGTLLGAC 318
           + W  ++  C
Sbjct: 370 VSWTAIISGC 379



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 121/280 (43%), Gaps = 40/280 (14%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           +V    SL+  Y  CG V +   VF+     +VV+W S++ G        E + LF +M 
Sbjct: 134 EVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMR 193

Query: 70  QR----NDVSWNSILGGL----------------VRFGS-------------------VD 90
                 N  ++ S+L  +                V+FG                    V+
Sbjct: 194 AEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVE 253

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           DA  VFN M  R +VSW  L++G   N    EAL LF E ++   +   +   +++  CA
Sbjct: 254 DAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCA 313

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH-SYGDKDVSAYT 209
            L  L     ++S + K    L   +  AL D Y+KCG +  A+ +F  + G ++V ++T
Sbjct: 314 NLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWT 373

Query: 210 SAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
           + I G   NG    A  LF  M+   + P+  +Y A+L A
Sbjct: 374 AIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKA 413



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 151/352 (42%), Gaps = 47/352 (13%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLF----- 65
           VFV NSL+  Y+ CG V DA+ VF+  +  D+VSWN+++ G   N   LE L+LF     
Sbjct: 236 VFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRA 295

Query: 66  --DKMPQRNDVSWNSILGGLVRF--------------------------------GSVDD 91
              KM Q    +   +   L +                                 G + D
Sbjct: 296 TMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELAD 355

Query: 92  ACRVFNQMP-KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           A  +F+     R++VSW  +ISG  QNG    A+ LF  M+   + PN     ++L A  
Sbjct: 356 ALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASL 415

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
            +        +++ + K   +    +  AL+  Y+K GS + A+ +F     KDV A+++
Sbjct: 416 SI----LPPQIHAQVIKTNYQHIPFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSA 471

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS-HLGWVEKGFYYFHSMFDV 269
            +   A  G    A  LF  M  +GI P+  +  +V+ AC+     V++G   FH++   
Sbjct: 472 MLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQG-RQFHAISIK 530

Query: 270 HGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           +     +   + +V +  R G ++ A+  +       D V W +++     H
Sbjct: 531 YRYHDAICVSSALVSMYSRKGNIDSAQ-IVFERQTDRDLVSWNSMISGYAQH 581


>gi|296084925|emb|CBI28334.3| unnamed protein product [Vitis vinifera]
          Length = 604

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/517 (38%), Positives = 306/517 (59%), Gaps = 30/517 (5%)

Query: 9   YDVFVKNSLIQFYSVCGRVRDARWVFDESDDL-----------DVVSWNSMINGYVRNGE 57
           Y   V+ S+      CG++      FDE   +           D    NSM+  Y+  GE
Sbjct: 104 YSSGVEFSIPSVLKACGKL----LAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGE 159

Query: 58  ILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQN 117
           I    ++FD+MP R+ VSWNS++ G ++ G ++ A  +F++MP+R LVS   +I G+   
Sbjct: 160 IELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELASELFDEMPERDLVSCNAMIDGYG-- 217

Query: 118 GRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDS-IL 176
                     +EM SL L P+   +VS+LSA A LG ++ G W+++Y+    I+L S  +
Sbjct: 218 ----------KEMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFI 267

Query: 177 CAALIDMYAKCGSIDLAMQVFHSYGDK-DVSAYTSAIFGLAMNGHSIEAFELFENMKSKG 235
            +ALIDMY+KCG I+ A  VF S   + ++  + S I GLA++G + EA ++F  M+   
Sbjct: 268 GSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMD 327

Query: 236 ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA 295
           I P+ I+++ +LS CSH G VE+G +YF SM + + I P + HY CM+DL GRAG LE+A
Sbjct: 328 IEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDA 387

Query: 296 ENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVET 355
              I +MP + D + W  +L A   H + E+G+      IE   +    Y+LLSNIY + 
Sbjct: 388 LGVIQNMPFEADLLAWKAILSASMKHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKA 447

Query: 356 LKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAG-DRSHEKTQEIYQFWEEIVKK 414
            + ++  ++R  MR+R +K+  GCS + ++G VHEFL G +     + ++     E+V +
Sbjct: 448 GRWDDVAKIRLMMRQRGVKKIAGCSSMLVNGKVHEFLLGKELDSSYSGQVLAKIAEVVSR 507

Query: 415 IKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDC 474
           +K  GY  +   V+ DIE+E KE+++  HSEK+A+AFGLI     + I IVKN+R+C DC
Sbjct: 508 LKLQGYEPDLTQVLLDIEDEGKESLLNLHSEKMAIAFGLIHINKSAPIHIVKNLRVCCDC 567

Query: 475 HSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           H  MKLVSKV+ R+I +RD+  +HHFE+G CSC EYW
Sbjct: 568 HCFMKLVSKVYNRQIIMRDQNRFHHFENGCCSCNEYW 604



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 145/312 (46%), Gaps = 32/312 (10%)

Query: 40  LDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRF-------GSVDDA 92
           +  +S N +++   +   + E  ++  +M + N ++    +  L+ F       G +D A
Sbjct: 1   MTAISTNPVVSVLDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYA 60

Query: 93  CRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI---LVSLLSAC 149
             VF+++   +   +  LI GF+    P E+L L+  M S  L  +S +   + S+L AC
Sbjct: 61  SSVFSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSC-LNYSSGVEFSIPSVLKAC 119

Query: 150 AQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYT 209
            +L A D G  V+  + K  +  D  +  +++ MY   G I+LA +VF    ++DV ++ 
Sbjct: 120 GKLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWN 179

Query: 210 SAIFGLAMNGHSIEAFELFENMKSK-------------------GISPDSISYIAVLSAC 250
           S I G    G    A ELF+ M  +                   G+ PD  + ++VLSA 
Sbjct: 180 SMIAGYLKAGEIELASELFDEMPERDLVSCNAMIDGYGKEMLSLGLRPDGPAIVSVLSAI 239

Query: 251 SHLGWVEKGFYYFHSMFDVHGIKPELDHY-ACMVDLLGRAGLLEEAENFIASMPMKPDNV 309
           + LG+VE+G  + H+   ++ I+       + ++D+  + G +E A +   S+  + +  
Sbjct: 240 ADLGFVEEG-KWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIG 298

Query: 310 IWGTLLGACRVH 321
            W +++    +H
Sbjct: 299 DWNSMISGLAIH 310


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 199/577 (34%), Positives = 321/577 (55%), Gaps = 67/577 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           + +  F  DV +  ++I  Y+ CG V  AR +FD  ++ +V+SW++MI  Y  +G+  + 
Sbjct: 285 IQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKA 344

Query: 62  LKLFDKM-------------------------PQRNDVSWNSILGGLVR----------- 85
           L LF  M                          Q   V   + + G+++           
Sbjct: 345 LDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVRQVHAQASVHGMLQNLIVANKLVHF 404

Query: 86  ---FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNG-----------------RP----- 120
              + ++DDA  +F+ M  R  VSW V++ GFA+ G                 RP     
Sbjct: 405 YSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTL 464

Query: 121 ------KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDS 174
                  E+L LF +M+   + P+   +V+++ ACA+LGA+     +  YIQ+K  +LD 
Sbjct: 465 PFCGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDV 524

Query: 175 ILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK 234
           IL  A+IDM+AKCG ++ A ++F    +K+V ++++ I     +G   +A +LF  M   
Sbjct: 525 ILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRS 584

Query: 235 GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEE 294
           GI P+ I+ +++L ACSH G VE+G  +F  M++ + ++ ++ HY C+VDLLGRAG L+E
Sbjct: 585 GILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDE 644

Query: 295 AENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVE 354
           A   I SM ++ D  +WG  LGACR H++  + ++    L+E    + G YILLSNIY  
Sbjct: 645 ALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYAN 704

Query: 355 TLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKK 414
             + E+  + R  M +R++K+ PG + IE+D   H+F  GD +H +++EIY+  + +  K
Sbjct: 705 AGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNK 764

Query: 415 IKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDC 474
           ++  GY  +T  V+ D++EE K  ++  HSEKLA+AFGLI T   + IRI+KN+R+C DC
Sbjct: 765 LELVGYVPDTNFVLHDVDEELKIGILYSHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDC 824

Query: 475 HSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           H+  KLVS +  R I +RD   +HHF++G+CSC +YW
Sbjct: 825 HTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 861



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 98/329 (29%), Positives = 168/329 (51%), Gaps = 26/329 (7%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           ++ V N LI FYS    + DA  +FD     D VSW+ M+ G+ + G+ +     F ++ 
Sbjct: 112 NIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELI 171

Query: 70  QRNDVSWNSILGGLVRF------------------GSVDDACRVFNQMPKRSLVSWVVLI 111
           +      N  L  ++R                     ++DA  +F++M +R LV+W V+I
Sbjct: 172 RCGARPDNYTLPFVIRACRDLKNLQMALVDMYVKCREIEDARFLFDKMQERDLVTWTVMI 231

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK 171
            G+A+ G+  E+L LF +M+   + P+   +V+++ ACA+LGA+     +  YIQ+K  +
Sbjct: 232 GGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQ 291

Query: 172 LDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM 231
           LD IL  A+IDMYAKCG ++ A ++F    +K+V ++++ I     +G   +A +LF  M
Sbjct: 292 LDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMM 351

Query: 232 KSKGISPDSISYIAVLSA---CSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGR 288
            S G+ PD I+  ++L A   C +L  V +     H+   VHG+   L     +V     
Sbjct: 352 LSSGMLPDKITLASLLYACINCRNLTQVRQ----VHAQASVHGMLQNLIVANKLVHFYSY 407

Query: 289 AGLLEEAENFIASMPMKPDNVIWGTLLGA 317
              L++A      M ++ D+V W  ++G 
Sbjct: 408 YRALDDAYGLFDGMCVR-DSVSWSVMVGG 435



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 96/396 (24%), Positives = 171/396 (43%), Gaps = 77/396 (19%)

Query: 13  VKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP--- 69
           ++ +L+  Y  C  + DAR++FD+  + D+V+W  MI GY   G+  E L LF+KM    
Sbjct: 195 LQMALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEG 254

Query: 70  -------------------------------QRNDVSWNSILGGLV-----RFGSVDDAC 93
                                          QR     + ILG  +     + G V+ A 
Sbjct: 255 VVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAR 314

Query: 94  RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153
            +F++M +++++SW  +I+ +  +G+ ++AL LFR M S  + P+   L SLL AC    
Sbjct: 315 EIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACINCR 374

Query: 154 ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIF 213
            L     V++      +  + I+   L+  Y+   ++D A  +F     +D  +++  + 
Sbjct: 375 NLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVG 434

Query: 214 GLA-----MN-----------------------GHSIEAFELFENMKSKGISPDSISYIA 245
           G A     MN                       G++ E+  LF+ M+ +G+ PD ++ + 
Sbjct: 435 GFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKVAMVT 494

Query: 246 VLSACSHLGWVEKGFYYFHSMFD-VHGIKPELDHY--ACMVDLLGRAGLLEEAENFIASM 302
           V+ AC+ LG + K      ++ D +   K +LD      M+D+  + G +E A      M
Sbjct: 495 VVFACAKLGAMHKA----RTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRM 550

Query: 303 PMKPDNVI-WGTLLGACRVHRNAEMGQRIGNMLIES 337
             K  NVI W  ++ A   H        +  M++ S
Sbjct: 551 EEK--NVISWSAMIAAYGYHGQGRKALDLFPMMLRS 584


>gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g56690, mitochondrial; Flags: Precursor
 gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/534 (36%), Positives = 299/534 (55%), Gaps = 32/534 (5%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DV    ++I      GRV +AR +FDE  + +VV+W +MI GY +N  +    KLF+ MP
Sbjct: 171 DVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMP 230

Query: 70  QRNDVSWNSILGGLVRFGSVDD--------------AC-----------------RVFNQ 98
           ++ +VSW S+L G    G ++D              AC                 RVF+ 
Sbjct: 231 EKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDL 290

Query: 99  MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
           M  R   +W  +I  + + G   EAL LF +MQ   + P+   L+S+LS CA L +L YG
Sbjct: 291 MEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYG 350

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
             V++++ +     D  + + L+ MY KCG +  A  VF  +  KD+  + S I G A +
Sbjct: 351 RQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASH 410

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDH 278
           G   EA ++F  M S G  P+ ++ IA+L+ACS+ G +E+G   F SM     + P ++H
Sbjct: 411 GLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEH 470

Query: 279 YACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338
           Y+C VD+LGRAG +++A   I SM +KPD  +WG LLGAC+ H   ++ +     L E++
Sbjct: 471 YSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFENE 530

Query: 339 QNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGD-RS 397
            ++ G Y+LLS+I     K  +   VRK MR   + + PGCS IE+   VH F  G  ++
Sbjct: 531 PDNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFTRGGIKN 590

Query: 398 HEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTK 457
           H +   I    E+    ++  GY+ +   V+ D++EEEK   +  HSE+LA+A+GL+   
Sbjct: 591 HPEQAMILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKLP 650

Query: 458 PGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            G  IR++KN+R+C DCH+A+KL+SKV +R+I +RD   +HHF +G CSC +YW
Sbjct: 651 EGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNGECSCRDYW 704



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 171/345 (49%), Gaps = 23/345 (6%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDV 74
           NS++  Y   G  ++AR +FDE  + +VVSWN +++GY++N  I+E   +F+ MP+RN V
Sbjct: 52  NSIVSGYFSNGLPKEARQLFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVV 111

Query: 75  SWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD 134
           SW +++ G ++ G V +A  +F +MP+R+ VSW V+  G   +GR  +A  L+  M   D
Sbjct: 112 SWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVKD 171

Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
           +  ++    +++    + G +D    ++  ++++ +    +    +I  Y +   +D+A 
Sbjct: 172 VVAST----NMIGGLCREGRVDEARLIFDEMRERNV----VTWTTMITGYRQNNRVDVAR 223

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
           ++F    +K   ++TS + G  ++G   +A E FE M  K +    I+  A++     +G
Sbjct: 224 KLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPV----IACNAMIVGFGEVG 279

Query: 255 WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP---MKPDNVIW 311
            + K    F  M D          +  M+    R G   EA +  A M    ++P     
Sbjct: 280 EISKARRVFDLMEDRDNAT-----WRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSL 334

Query: 312 GTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYI--LLSNIYVE 354
            ++L  C    + + G+++   L+   Q  D  Y+  +L  +YV+
Sbjct: 335 ISILSVCATLASLQYGRQVHAHLVRC-QFDDDVYVASVLMTMYVK 378



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 138/300 (46%), Gaps = 18/300 (6%)

Query: 18  IQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWN 77
           I   S  G++ +AR  FD      + SWNS+++GY  NG   E  +LFD+M +RN VSWN
Sbjct: 24  ISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNVVSWN 83

Query: 78  SILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEP 137
            ++ G ++   + +A  VF  MP+R++VSW  ++ G+ Q G   EA +LF  M     E 
Sbjct: 84  GLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMP----ER 139

Query: 138 NSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVF 197
           N      +       G +D    +Y  +  K    D +    +I    + G +D A  +F
Sbjct: 140 NEVSWTVMFGGLIDDGRIDKARKLYDMMPVK----DVVASTNMIGGLCREGRVDEARLIF 195

Query: 198 HSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVE 257
               +++V  +T+ I G   N     A +LFE M  K      +S+ ++L   +  G +E
Sbjct: 196 DEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEK----TEVSWTSMLLGYTLSGRIE 251

Query: 258 KGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
                    F+V  +KP +   A +V   G  G + +A      M  + DN  W  ++ A
Sbjct: 252 DA----EEFFEVMPMKPVIACNAMIVG-FGEVGEISKARRVFDLMEDR-DNATWRGMIKA 305



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 83/164 (50%), Gaps = 12/164 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +V+  F  DV+V + L+  Y  CG +  A+ VFD     D++ WNS+I+GY  +G   E 
Sbjct: 357 LVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEA 416

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVV-----LIS 112
           LK+F +MP      N V+  +IL      G +++   +F  M  +  V+  V      + 
Sbjct: 417 LKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVD 476

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALD 156
              + G+  +A+ L   ++S+ ++P++ +  +LL AC     LD
Sbjct: 477 MLGRAGQVDKAMEL---IESMTIKPDATVWGALLGACKTHSRLD 517


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/541 (36%), Positives = 304/541 (56%), Gaps = 39/541 (7%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM- 68
           +V   N LI  Y   G +  A+ +FDE  + ++ +WN+MI G  +     + L LF +M 
Sbjct: 127 NVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMY 186

Query: 69  -----PQ--------RNDVSWNSILGG-------------------------LVRFGSVD 90
                P         R      S+L G                          ++ GS+ 
Sbjct: 187 GLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLS 246

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           D  ++   MP R++V+W  LI+G AQNG P+E L  +  M+     P+    VS+LSAC+
Sbjct: 247 DGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACS 306

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
           +L  L  G  +++ + K        + ++LI MY++ G ++ +++ F    + DV  ++S
Sbjct: 307 ELATLGQGQQIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDRENFDVVLWSS 366

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I     +G   EA ELF  M+   +  + ++++++L ACSH G  EKG  YF  M   +
Sbjct: 367 MIAAYGFHGRGEEALELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYFDLMVKKY 426

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
            +KP ++HY C+VDLLGRAG LEEAE  I SMP++PD +IW TLL AC++H+ AEM +RI
Sbjct: 427 KLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVQPDGIIWKTLLAACKLHKEAEMAERI 486

Query: 331 GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHE 390
              +I+ D      Y+LLSNI+       N  ++RK MR R +++ PG S +EL  +VH+
Sbjct: 487 SEEIIKLDPLDAASYVLLSNIHASARNWLNVSQIRKAMRDRSVRKEPGISWLELKNLVHQ 546

Query: 391 FLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALA 450
           F  GD+SH +  EI  + +E++ ++K +GY  E  SV+ D++ EEKE  + +HSEK A+A
Sbjct: 547 FSMGDKSHPQYFEIDLYLKELMSELKQHGYVPELGSVLHDMDNEEKEYNLAHHSEKFAIA 606

Query: 451 FGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEY 510
           F L+ T     IR++KN+R+C DCH+A+K +S++  R+I +RD   +HHF+DG CSC  Y
Sbjct: 607 FALMNTSENVPIRVMKNLRVCDDCHNAIKCISRIRNREIIVRDASRFHHFKDGECSCGNY 666

Query: 511 W 511
           W
Sbjct: 667 W 667



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 151/287 (52%), Gaps = 16/287 (5%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N ++N Y + G+    L LF  MP+RN +S+N ++ G ++ G ++ A ++F++M +R++ 
Sbjct: 101 NHLLNFYSKLGQFKSSLVLFSNMPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIA 160

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           +W  +I+G  Q    K+AL+LF+EM  L   P+   L S+L  CA L +L  G  V++ +
Sbjct: 161 TWNAMIAGLTQFEFNKQALSLFKEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACL 220

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
            K   +L S++ ++L  MY K GS+    ++  S   + V A+ + I G A NG   E  
Sbjct: 221 LKCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVL 280

Query: 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL 285
             +  MK  G  PD I++++VLSACS L  + +G    H+     G    L   + ++ +
Sbjct: 281 NQYNMMKMAGFRPDKITFVSVLSACSELATLGQG-QQIHAEVIKAGASSVLAVVSSLISM 339

Query: 286 LGRAGLLEEA-------ENFIASMPMKPDNVIWGTLLGACRVHRNAE 325
             R+G LE++       ENF        D V+W +++ A   H   E
Sbjct: 340 YSRSGCLEDSIKAFVDRENF--------DVVLWSSMIAAYGFHGRGE 378



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 96/234 (41%), Gaps = 44/234 (18%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K  F     V +SL   Y   G + D   +        VV+WN++I G  +NG   E 
Sbjct: 220 LLKCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEV 279

Query: 62  LKLFDKMP----QRNDVSWNSILGG----------------------------------- 82
           L  ++ M     + + +++ S+L                                     
Sbjct: 280 LNQYNMMKMAGFRPDKITFVSVLSACSELATLGQGQQIHAEVIKAGASSVLAVVSSLISM 339

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             R G ++D+ + F       +V W  +I+ +  +GR +EAL LF +M+ L +E N    
Sbjct: 340 YSRSGCLEDSIKAFVDRENFDVVLWSSMIAAYGFHGRGEEALELFHQMEDLKMEANEVTF 399

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKC---IKLDSILCAALIDMYAKCGSIDLA 193
           +SLL AC+  G  + G   +  + KK     +++   C  ++D+  + G ++ A
Sbjct: 400 LSLLYACSHSGLKEKGTEYFDLMVKKYKLKPRIEHYTC--VVDLLGRAGRLEEA 451



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 92/189 (48%), Gaps = 16/189 (8%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K   +  + V +SLI  YS  G + D+   F + ++ DVV W+SMI  Y  +G   E 
Sbjct: 321 VIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDRENFDVVLWSSMIAAYGFHGRGEEA 380

Query: 62  LKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLIS 112
           L+LF +M     + N+V++ S+L      G  +     F+ M K+      +  +  ++ 
Sbjct: 381 LELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYFDLMVKKYKLKPRIEHYTCVVD 440

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKL 172
              + GR +EA  + R   S+ ++P+  I  +LL+AC     L     +   I ++ IKL
Sbjct: 441 LLGRAGRLEEAEGMIR---SMPVQPDGIIWKTLLAAC----KLHKEAEMAERISEEIIKL 493

Query: 173 DSILCAALI 181
           D +  A+ +
Sbjct: 494 DPLDAASYV 502



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 58/283 (20%), Positives = 111/283 (39%), Gaps = 47/283 (16%)

Query: 66  DKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALA 125
           ++ P R   S+N+ L  L  F     + ++ +    +   S          +GR K+A  
Sbjct: 3   NRKPSR---SFNAFLNPLYSFTVRSLSMKISSSASLQEFTS-------LCNDGRIKQAYD 52

Query: 126 LFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYA 185
            F      ++  + ++   LL +C +LG+L  G  V+S I       D  +   L++ Y+
Sbjct: 53  TFTS----EIWSDPSLFSHLLQSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHLLNFYS 108

Query: 186 KCGS-------------------------------IDLAMQVFHSYGDKDVSAYTSAIFG 214
           K G                                ++ A ++F    +++++ + + I G
Sbjct: 109 KLGQFKSSLVLFSNMPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAG 168

Query: 215 LAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP 274
           L     + +A  LF+ M   G  PD  +  +VL  C+ L  +  G    H+     G + 
Sbjct: 169 LTQFEFNKQALSLFKEMYGLGFLPDEFTLGSVLRGCAGLRSLLAG-QEVHACLLKCGFEL 227

Query: 275 ELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
                + +  +  ++G L + E  I SMP++   V W TL+  
Sbjct: 228 SSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRTV-VAWNTLIAG 269


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/551 (35%), Positives = 302/551 (54%), Gaps = 40/551 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + V   F+ D  V N ++ FYS   RV + R +FDE  +LD VS+N +I+ Y +  +   
Sbjct: 275 LSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEA 334

Query: 61  GLKLFDKMP----QRNDVSWNSILGGLVRFGSV--------------------------- 89
            L  F +M      R +  + ++L       S+                           
Sbjct: 335 SLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVD 394

Query: 90  --------DDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
                   ++A  +F  +P+R+ VSW  LISG+ Q G     L LF +M+  +L  + + 
Sbjct: 395 MYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQST 454

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
             ++L A A   +L  G  ++++I +     +    + L+DMYAKCGSI  A+QVF    
Sbjct: 455 FATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMP 514

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
           D++  ++ + I   A NG    A   F  M   G+ PDS+S + VL+ACSH G+VE+G  
Sbjct: 515 DRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTE 574

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           YF +M  ++GI P+  HYACM+DLLGR G   EAE  +  MP +PD ++W ++L ACR+H
Sbjct: 575 YFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIH 634

Query: 322 RNAEMGQRIGNMLIESDQNHDGR-YILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS 380
           +N  + +R    L   ++  D   Y+ +SNIY    + E   +V+K MR+R IK+ P  S
Sbjct: 635 KNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYS 694

Query: 381 LIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVI 440
            +E++  +H F + D++H    EI +   E+  +I+  GY  +T SV+ D++E+ K   +
Sbjct: 695 WVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDEQMKIESL 754

Query: 441 GYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF 500
            YHSE+LA+AF LI T  G  I ++KN+R C DCH+A+KL+SK+ KR+I++RD   +HHF
Sbjct: 755 KYHSERLAVAFALISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDTSRFHHF 814

Query: 501 EDGSCSCLEYW 511
            +G CSC +YW
Sbjct: 815 SEGVCSCGDYW 825



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 109/228 (47%), Gaps = 5/228 (2%)

Query: 26  RVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVR 85
           R  DAR +     D D    N ++   +R G++    K++D+MP +N VS N+++ G V+
Sbjct: 33  RRVDAR-IIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVK 91

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM--QSLDLEPNSAILV 143
            G V  A  +F+ MP R++V+W +L+  +A+N    EA  LFR+M   S    P+     
Sbjct: 92  TGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFT 151

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA--LIDMYAKCGSIDLAMQVFHSYG 201
           +LL  C      +    V+++  K     +  L  +  L+  Y +   +DLA  +F    
Sbjct: 152 TLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIP 211

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
           +KD   + + I G   +G   E+  LF  M+  G  P   ++  VL A
Sbjct: 212 EKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKA 259


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/547 (36%), Positives = 313/547 (57%), Gaps = 37/547 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDL-DVVSWNSMINGYVRNGEILE 60
           V+KN   +D+ +K +L+  YS C  + DA  +F     + +VVSW ++I+GYV+NG    
Sbjct: 320 VIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDR 379

Query: 61  GLKLFDKMPQR----NDVSWNSILGG-----------LV--------------------R 85
            + LF +M +     N  ++++IL             LV                    +
Sbjct: 380 AMNLFCQMRREGVRPNHFTYSTILTANAAVSPSQIHALVVKTNYENSPSVGTALSDSYSK 439

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
            G  ++A ++F  + ++ +V+W  ++SG+AQ G  + A+ +F ++    +EPN     S+
Sbjct: 440 IGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSV 499

Query: 146 LSACAQLGA-LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           L+ACA   A ++ G   +S   K        + +AL+ MYAK G+I+ A +VF    D+D
Sbjct: 500 LNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRD 559

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           + ++ S I G A +G   ++ ++FE M+SK +  D I++I V+SAC+H G V +G  YF 
Sbjct: 560 LVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFD 619

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
            M   + I P ++HY+CMVDL  RAG+LE+A + I  MP      IW TLL ACRVH N 
Sbjct: 620 LMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNV 679

Query: 325 EMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIEL 384
           ++G+     LI         Y+LLSNIY      +   +VRK M  +K+K+  G S IE+
Sbjct: 680 QLGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEV 739

Query: 385 DGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHS 444
                 F+AGD SH ++  IY   EE+  ++K+ GY  +T+ V+ D+EEE KE ++  HS
Sbjct: 740 KNKTFSFMAGDLSHPQSDRIYLKLEELSIRLKDAGYYPDTKYVLHDVEEEHKEVILSQHS 799

Query: 445 EKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGS 504
           E+LA+AFGLI T PG+ I+IVKN+R+C DCH+ +KL+SK+  R I +RD   +HHF+ GS
Sbjct: 800 ERLAIAFGLIATPPGTPIQIVKNLRVCGDCHTVIKLISKIEGRDIVVRDSNRFHHFKGGS 859

Query: 505 CSCLEYW 511
           CSC +YW
Sbjct: 860 CSCGDYW 866



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 167/362 (46%), Gaps = 47/362 (12%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           MV+K+     +FV NS++  YS    V DA+ VFD  ++ + VSWNSMI G+V NG  LE
Sbjct: 218 MVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLE 277

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRF---------------------------------- 86
             +LF +M         +I   +++                                   
Sbjct: 278 AFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMV 337

Query: 87  -----GSVDDACRVFNQMPK-RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
                  +DDA ++F  M   +++VSW  +ISG+ QNGR   A+ LF +M+   + PN  
Sbjct: 338 AYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHF 397

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
              ++L+A A +      + +++ + K   +    +  AL D Y+K G  + A ++F   
Sbjct: 398 TYSTILTANAAVSP----SQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELI 453

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC-SHLGWVEKG 259
            +KD+ A+++ + G A  G    A ++F  +  +G+ P+  ++ +VL+AC +    VE+G
Sbjct: 454 DEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQG 513

Query: 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACR 319
              FHS     G    L   + +V +  + G +E A N +    +  D V W +++    
Sbjct: 514 -KQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESA-NEVFKRQVDRDLVSWNSMISGYA 571

Query: 320 VH 321
            H
Sbjct: 572 QH 573



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 134/287 (46%), Gaps = 40/287 (13%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +K  F  DV V  SL+  Y     V D   VFDE    +VVSW S++ GY +NG   + L
Sbjct: 119 IKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQAL 178

Query: 63  KLFDKMP----QRNDVSWNSILGGLVRFGSVD---------------------------- 90
           KLF +M     + N  ++ ++LGGL   G+V+                            
Sbjct: 179 KLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMY 238

Query: 91  -------DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
                  DA  VF+ M  R+ VSW  +I+GF  NG   EA  LF  M+   ++    I  
Sbjct: 239 SKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFA 298

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVF-HSYGD 202
           +++  CA +  + +   ++  + K     D  +  AL+  Y+KC  ID A ++F   +G 
Sbjct: 299 TVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGV 358

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
           ++V ++T+ I G   NG +  A  LF  M+ +G+ P+  +Y  +L+A
Sbjct: 359 QNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTA 405



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 95/166 (57%)

Query: 88  SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLS 147
           SV+D  RVF++M  +++VSW  L++G+ QNG  ++AL LF +MQ   ++PN     ++L 
Sbjct: 142 SVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLG 201

Query: 148 ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSA 207
             A  GA++ G  V++ + K  +     +  ++++MY+K   +  A  VF S  +++  +
Sbjct: 202 GLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVS 261

Query: 208 YTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL 253
           + S I G   NG  +EAFELF  M+ +G+      +  V+  C+++
Sbjct: 262 WNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANI 307



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 114/228 (50%), Gaps = 10/228 (4%)

Query: 94  RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153
           ++F++ P++ L     L+  F++N + KEAL LF  ++      + + L  +L  C  L 
Sbjct: 47  QLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCL- 105

Query: 154 ALDYGNWVYSYIQKKCIKL----DSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYT 209
              +   V   +  +CIK     D  +  +L+DMY K  S++   +VF     K+V ++T
Sbjct: 106 ---FDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWT 162

Query: 210 SAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDV 269
           S + G   NG + +A +LF  M+ +GI P+  ++ AVL   +  G VEKG    H+M   
Sbjct: 163 SLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGV-QVHTMVIK 221

Query: 270 HGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
            G+   +     MV++  ++ ++ +A+    SM  + + V W +++  
Sbjct: 222 SGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENR-NAVSWNSMIAG 268


>gi|222630733|gb|EEE62865.1| hypothetical protein OsJ_17668 [Oryza sativa Japonica Group]
          Length = 620

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 188/421 (44%), Positives = 265/421 (62%), Gaps = 15/421 (3%)

Query: 99  MPKRSLVSWVVLISGFAQNGRPKEALALF-------REMQSLDLEPNSAILVSLLSACAQ 151
           M  R + +W  L++G AQ   P  ALALF       +E+ S + EPN   +V+ LSACAQ
Sbjct: 1   MTVRDVATWNSLLAGLAQGTEPNLALALFHRLANSFQELPSRE-EPNEVTIVAALSACAQ 59

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG--DKDVSAYT 209
           +G L  G +V+ + ++  +  +  +C +LIDMY+KCGS+  A+ VFHS    D+ + +Y 
Sbjct: 60  IGLLKDGMYVHEFAKRFGLDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDQTLVSYN 119

Query: 210 SAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDV 269
           +AI   +M+GH  +A  LF+ M ++ I PD ++Y+AVL  C+H G V+ G   F+SM   
Sbjct: 120 AAIQAHSMHGHGGDALRLFDEMPTR-IEPDGVTYLAVLCGCNHSGLVDDGLRVFNSM--- 175

Query: 270 HGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQR 329
             + P + HY  +VDLLGRAG L EA + + SMP   D V+W TLLGA ++H   E+ + 
Sbjct: 176 -RVAPNMKHYGTIVDLLGRAGRLTEAYDTVISMPFPADIVLWQTLLGAAKMHGVVELAEL 234

Query: 330 IGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVH 389
             N L E   N DG Y+LLSN+Y    +  +   VR TMR   +++ PG S  E+DGV+H
Sbjct: 235 AANKLAELGSNVDGDYVLLSNVYASKARWMDVGRVRDTMRSNDVRKVPGFSYTEIDGVMH 294

Query: 390 EFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLAL 449
           +F+ GD+ H + QEIY+  E+IV +I   GY  ET +V+ DI EEEK+  + YHSEKLA+
Sbjct: 295 KFINGDKEHPRWQEIYRALEDIVSRISELGYEPETSNVLHDIGEEEKQYALCYHSEKLAI 354

Query: 450 AFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLE 509
           AFGLI T PG  +R++KN+RIC DCH   KL+SK + R I IRDR  +H FEDG CSC +
Sbjct: 355 AFGLIATPPGETLRVIKNLRICGDCHVVAKLISKAYGRVIVIRDRARFHRFEDGQCSCRD 414

Query: 510 Y 510
           Y
Sbjct: 415 Y 415



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 78/153 (50%), Gaps = 9/153 (5%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFD--ESDDLDVVSWNSMINGYVRNGEILEGLKLFDK 67
           +V V NSLI  YS CG +  A  VF   + +D  +VS+N+ I  +  +G   + L+LFD+
Sbjct: 81  NVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDQTLVSYNAAIQAHSMHGHGGDALRLFDE 140

Query: 68  MPQR---NDVSWNSILGGLVRFGSVDDACRVFNQMP-KRSLVSWVVLISGFAQNGRPKEA 123
           MP R   + V++ ++L G    G VDD  RVFN M    ++  +  ++    + GR  EA
Sbjct: 141 MPTRIEPDGVTYLAVLCGCNHSGLVDDGLRVFNSMRVAPNMKHYGTIVDLLGRAGRLTEA 200

Query: 124 LALFREMQSLDLEPNSAILVSLLSACAQLGALD 156
              +  + S+    +  +  +LL A    G ++
Sbjct: 201 ---YDTVISMPFPADIVLWQTLLGAAKMHGVVE 230


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 199/550 (36%), Positives = 303/550 (55%), Gaps = 39/550 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + +KN F  D++V   LI  YS  G +  A+ + D  ++ DVVSW SMI GYV++    E
Sbjct: 370 LTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKE 429

Query: 61  GLKLFDKMPQ--------------------------------------RNDVS-WNSILG 81
            L+ F +M                                          DVS WN ++ 
Sbjct: 430 ALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVY 489

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              R G   +A   F  +  +  ++W  LISGFAQ+G  +EAL +F +M     + N   
Sbjct: 490 LYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFT 549

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
            VS +SA A L  +  G  +++ + K     ++ +  ALI +Y KCGSI+ A   F    
Sbjct: 550 FVSSISASANLADIKQGKQIHARVIKTGYTSETEISNALISLYGKCGSIEDAKMDFFEMT 609

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
            ++  ++ + I   + +G  +EA +LF+ MK +G+ P  ++++ VL+ACSH+G VE+G  
Sbjct: 610 KRNEVSWNTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEGLC 669

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           YF SM + HGI P  DHYAC+VD+LGRAG L+ A+ F+  MP+  D+++W TLL AC+VH
Sbjct: 670 YFKSMSNEHGIHPRPDHYACVVDILGRAGQLDRAKRFVEEMPIPADSMVWRTLLSACKVH 729

Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
           +N E+G+     L+E + +    Y+LLSN Y  T K  + +++RK M+ R +++ PG S 
Sbjct: 730 KNLEIGEFAAKHLLELEPHDSASYVLLSNAYAVTGKWASRDQIRKIMKDRGVRKEPGRSW 789

Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIG 441
           IE+  VVH F  GDR H    +IY F   +  ++   GY  E   +  + E+E K+    
Sbjct: 790 IEVKNVVHAFFVGDRLHPLADQIYNFLSHLNDRLYKIGYKQENYHLFHEKEKEGKDPTAF 849

Query: 442 YHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
            HSEKLA+AFGL+       +R++KN+R+C+DCH+ MK  S V  R+I +RD   +HHF 
Sbjct: 850 VHSEKLAVAFGLMSLPSCMPLRVIKNLRVCNDCHTWMKFTSGVMGREIVLRDVYRFHHFN 909

Query: 502 DGSCSCLEYW 511
           +GSCSC +YW
Sbjct: 910 NGSCSCGDYW 919



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 164/348 (47%), Gaps = 41/348 (11%)

Query: 13  VKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRN 72
           + N LI  Y+  G VR AR VF+E    D VSW ++++GY +NG   E ++L+ +M +  
Sbjct: 79  IGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSG 138

Query: 73  DVSW---------------------------------------NSILGGLVRFGSVDDAC 93
            V                                         N+++   +R  S   A 
Sbjct: 139 VVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLAD 198

Query: 94  RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153
           RVF  M     V++  LISG AQ G    AL +F EMQ   L P+S  + SLL+AC+ +G
Sbjct: 199 RVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVG 258

Query: 154 ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIF 213
            L  G  ++SY+ K  + LD I+  +L+D+Y K G I+ A+Q+F S    +V  +   + 
Sbjct: 259 DLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLV 318

Query: 214 GLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIK 273
                    ++F++F  M + G+ P+  +Y  +L  C+H G +  G    HS+   +G +
Sbjct: 319 AYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLG-EQIHSLTIKNGFQ 377

Query: 274 PELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            ++     ++D+  + G L++A+  I  M  + D V W +++     H
Sbjct: 378 SDMYVSGVLIDMYSKYGWLDKAQR-ILDMIEEKDVVSWTSMIAGYVQH 424



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 166/359 (46%), Gaps = 41/359 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K   + D  ++ SL+  Y   G + +A  +FD  D  +VV WN M+  Y +  ++ + 
Sbjct: 270 LLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKS 329

Query: 62  LKLFDKM----PQRNDVSWNSIL-------------------------------GGLV-- 84
             +F +M     + N  ++  +L                               G L+  
Sbjct: 330 FDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDM 389

Query: 85  --RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             ++G +D A R+ + + ++ +VSW  +I+G+ Q+   KEAL  F+EMQ+  + P++  L
Sbjct: 390 YSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGL 449

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S +SACA + A+  G+ +++ +       D  +   L+ +YA+CG    A   F +   
Sbjct: 450 ASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEH 509

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           K+   +   I G A +G   EA ++F  M   G   +  ++++ +SA ++L  +++G   
Sbjct: 510 KEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQG-KQ 568

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            H+     G   E +    ++ L G+ G +E+A+     M  K + V W T++  C  H
Sbjct: 569 IHARVIKTGYTSETEISNALISLYGKCGSIEDAKMDFFEM-TKRNEVSWNTIITCCSQH 626



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 162/354 (45%), Gaps = 43/354 (12%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V K  F  + FV N+LI  Y  C   R A  VF +    D V++N++I+G+ + G     
Sbjct: 169 VYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRA 228

Query: 62  LKLFDKMPQRNDVSWNSI-----------LGGL--------------------------- 83
           L +FD+M Q + +S +S+           +G L                           
Sbjct: 229 LGIFDEM-QLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLD 287

Query: 84  --VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
             V+ G +++A ++F+   + ++V W +++  + Q     ++  +F  M +  + PN   
Sbjct: 288 LYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFT 347

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
              +L  C   G +  G  ++S   K   + D  +   LIDMY+K G +D A ++     
Sbjct: 348 YPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIE 407

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
           +KDV ++TS I G   +    EA E F+ M++ GI PD+I   + +SAC+ +  V +G  
Sbjct: 408 EKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQG-S 466

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
             H+   V G   ++  +  +V L  R G+ +EA +   ++  K + + W  L+
Sbjct: 467 QIHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHK-EGITWNGLI 519


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 209/557 (37%), Positives = 311/557 (55%), Gaps = 55/557 (9%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFD----ESDDLDVVSWNSMINGYVRNGEILEGLKLF 65
           DV   N+++  YS  GR  DA  +F+    E  +L+VV+W+++I GY + G   E L +F
Sbjct: 296 DVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVF 355

Query: 66  DKM----PQRNDVSWNSILGGLVRFGSV-----------------------DD------- 91
            +M     + N V+  S+L G    G++                       DD       
Sbjct: 356 RQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINAL 415

Query: 92  ------------ACRVFNQMPK--RSLVSWVVLISGFAQNGRPKEALALFREMQSLD--L 135
                       A  +F+ +P   RS+V+W VLI G AQ+G   EAL LF +M   D  +
Sbjct: 416 IDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFV 475

Query: 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCA-ALIDMYAKCGSIDLAM 194
            PN+  +   L ACA+LGAL +G  +++Y+ +   +   +  A  LIDMY+K G +D A 
Sbjct: 476 MPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAAR 535

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
            VF +   ++  ++TS + G  M+G   EA ++F  M+  G+ PD ++++ VL ACSH G
Sbjct: 536 VVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSG 595

Query: 255 WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTL 314
            V++G  YF+ M    G+ P  +HYACMVDLL RAG L+EA   I  MPMKP   +W  L
Sbjct: 596 MVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVAL 655

Query: 315 LGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIK 374
           L ACRV+ N E+G+   N L+E +  +DG Y LLSNIY      ++   +R  M+   IK
Sbjct: 656 LSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIK 715

Query: 375 RAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEE 434
           + PGCS ++       F AGD SH  +Q+IY    +++++IK  GY  + R  + D+++E
Sbjct: 716 KRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVPDNRFALHDVDDE 775

Query: 435 EKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDR 494
           EK  ++  HSEKLALA+G++ T PG+ IRI KN+R C DCHSA   +S + + +I +RD 
Sbjct: 776 EKGDLLSEHSEKLALAYGILTTAPGAPIRITKNLRACGDCHSAFTYISIIIEHEIIVRDS 835

Query: 495 KHYHHFEDGSCSCLEYW 511
             +HHF++GSCSC  YW
Sbjct: 836 SRFHHFKNGSCSCRGYW 852



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 112/423 (26%), Positives = 184/423 (43%), Gaps = 98/423 (23%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDL---DVVSWNSMINGYVRNGE 57
           +V  + F ++VFV N L+  Y  CG   +AR VFDE  +    D+VSWNS++  Y++ G+
Sbjct: 151 VVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGD 210

Query: 58  ILEGLKLFDKMPQ----RNDV--------------SW----------------------N 77
            +  +K+F++M +    R D               +W                      N
Sbjct: 211 SIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGN 270

Query: 78  SILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALAL----------- 126
           +++    + G +++A +VF +M  + +VSW  +++G++Q GR  +AL L           
Sbjct: 271 AVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIEL 330

Query: 127 ------------------------FREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVY 162
                                   FR+M+    EPN   LVSLLS CA  G L +G   +
Sbjct: 331 NVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETH 390

Query: 163 SYIQKKCIKLDS-------ILCAALIDMYAKCGSIDLAMQVFHSYGDKD--VSAYTSAIF 213
            +  K  + LD        ++  ALIDMY+KC S   A  +F     KD  V  +T  I 
Sbjct: 391 CHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIG 450

Query: 214 GLAMNGHSIEAFELFENM--KSKGISPDSISYIAVLSACSHLGWVEKG----FYYFHSMF 267
           G A +G + EA ELF  M      + P++ +    L AC+ LG +  G     Y   + F
Sbjct: 451 GNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRF 510

Query: 268 DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMG 327
           +       L    C++D+  ++G ++ A     +M  + + V W +L+    +H   E  
Sbjct: 511 E----SAMLFVANCLIDMYSKSGDVDAARVVFDNMHQR-NGVSWTSLMTGYGMHGRGEEA 565

Query: 328 QRI 330
            +I
Sbjct: 566 LQI 568



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 111/243 (45%), Gaps = 8/243 (3%)

Query: 79  ILGGLVRFGSVDDACRVFNQMPKRS--LVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136
           I+   + F S   A  V  ++   S  +  W  LI      G  ++ L L+R MQ L   
Sbjct: 64  IISMYLTFNSPAKALSVLRRLHPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWR 123

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
           P+      +L AC ++ +   G  V++ +     + +  +   L+ MY +CG+ + A QV
Sbjct: 124 PDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQV 183

Query: 197 F---HSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK-GISPDSISYIAVLSACSH 252
           F      G  D+ ++ S +      G SI A ++FE M    GI PD++S + VL AC+ 
Sbjct: 184 FDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACAS 243

Query: 253 LGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWG 312
           +G   +G    H      G+  ++     +VD+  + G++EEA      M +K D V W 
Sbjct: 244 VGAWSRG-KQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVK-DVVSWN 301

Query: 313 TLL 315
            ++
Sbjct: 302 AMV 304



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 89/183 (48%), Gaps = 17/183 (9%)

Query: 2   VVKNSF-AYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           V++N F +  +FV N LI  YS  G V  AR VFD     + VSW S++ GY  +G   E
Sbjct: 505 VLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEE 564

Query: 61  GLKLFDKMPQ----RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV-----SWVVLI 111
            L++F +M +     + V++  +L      G VD     FN M K   V      +  ++
Sbjct: 565 ALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMV 624

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK 171
              ++ GR  EA+ L R M    ++P  A+ V+LLSAC     ++ G     Y   + ++
Sbjct: 625 DLLSRAGRLDEAMELIRGMP---MKPTPAVWVALLSACRVYANVELGE----YAANQLLE 677

Query: 172 LDS 174
           L+S
Sbjct: 678 LES 680


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/549 (36%), Positives = 302/549 (55%), Gaps = 39/549 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K  F ++V+V + LI  Y+  G++  A  +     + DVVSW ++I+GY ++    E 
Sbjct: 441 VIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEA 500

Query: 62  LKLFDKMPQRN--------------------------------------DVS-WNSILGG 82
           LK F +M  R                                       D+S  N+++  
Sbjct: 501 LKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGNALVSL 560

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             R G + +A   F ++  +  +SW  LISGFAQ+G  ++AL +F +M    LE +    
Sbjct: 561 YARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTF 620

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S +SA A +  +  G  +++ I K+    D  +  ALI  YAKCGSI+ A + F    +
Sbjct: 621 GSAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPE 680

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           K+  ++ + I G + +G+  EA  LFE MK  G  P+ ++++ VLSACSH+G V KG  Y
Sbjct: 681 KNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKGLGY 740

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F SM   HG+ P+  HYAC+VDL+ RAG L  A  FI  MP++PD  IW TLL AC VH+
Sbjct: 741 FESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLSACTVHK 800

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           N E+G+     L+E +      Y+LLSN+Y  + K +  ++ R+ MR R +K+ PG S I
Sbjct: 801 NVEVGEFAAQHLLELEPEDSATYVLLSNMYAVSGKWDCRDQTRQMMRNRGVKKEPGRSWI 860

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E+   VH F  GDR H    +IY+F  E+ KK    GY  +  S++ D+E+E+K+  +  
Sbjct: 861 EVKNSVHAFYVGDRLHPLADKIYEFLAELNKKAAEIGYFQDRYSLLNDVEQEQKDPTVYI 920

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSEKLA+ FGL+       I ++KN+R+C DCHS +K VSK+  R I +RD   +HHFE 
Sbjct: 921 HSEKLAITFGLLSLSDTVPIHVMKNLRVCKDCHSWIKFVSKISNRAIIVRDAYRFHHFEG 980

Query: 503 GSCSCLEYW 511
           G CSC +YW
Sbjct: 981 GICSCKDYW 989



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 106/371 (28%), Positives = 173/371 (46%), Gaps = 49/371 (13%)

Query: 13  VKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNG---------------- 56
           + N LI  Y+  G +  AR VFD     D VSW +MI+G+ +NG                
Sbjct: 149 ISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAG 208

Query: 57  ---------EILEG---LKLFDKMPQRNDVSW-----------NSILGGLVRFGSVDDAC 93
                     +L G   +KLFD   Q + + +           N+++    R  +   A 
Sbjct: 209 IFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAE 268

Query: 94  RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153
           +VF++M  +  VS+  LISG AQ G    AL LF +M+   L+P+   + SLLSACA  G
Sbjct: 269 KVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNG 328

Query: 154 ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIF 213
           AL  G  ++SY+ K  I  D I+  AL+D+Y  C  I  A ++F +   ++V  +   + 
Sbjct: 329 ALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLV 388

Query: 214 GLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIK 273
                 +  E+F +F  M+ KG+ P+  +Y ++L  C+ +G ++ G    H+     G  
Sbjct: 389 AFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLG-EQIHTQVIKTGF- 446

Query: 274 PELDHYAC--MVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR-NAEMGQRI 330
            + + Y C  ++D+  + G L+ A   + ++  + D V W  L+     H   AE  +  
Sbjct: 447 -QFNVYVCSVLIDMYAKHGKLDTAHVILRTLT-EDDVVSWTALISGYAQHNLFAEALKHF 504

Query: 331 GNML---IESD 338
             ML   I+SD
Sbjct: 505 KEMLNRGIQSD 515



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 95/357 (26%), Positives = 163/357 (45%), Gaps = 44/357 (12%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K  F  +  + N L+  Y   G +     VF++  +  V SW+ +I+G++        
Sbjct: 36  ILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRV 95

Query: 62  LKLFDKMPQRN----DVSWNSIL------------------------------------G 81
           L LF  M + N    ++S+ S+L                                    G
Sbjct: 96  LDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIG 155

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G +  A +VF+ +  +  VSWV +ISGF+QNG  +EA+ LF EM +  + P   +
Sbjct: 156 LYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYV 215

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
             S+LS C ++   D G  +++ + K    L++ +C AL+ +Y++  +   A +VF    
Sbjct: 216 FSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQ 275

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
            KD  ++ S I GLA  G S  A ELF  MK   + PD ++  ++LSAC+  G + KG  
Sbjct: 276 SKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKG-E 334

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVI-WGTLLGA 317
             HS     GI  ++     ++DL      ++ A      +  + +NV+ W  +L A
Sbjct: 335 QLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMF--LTAQTENVVLWNVMLVA 389



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 159/354 (44%), Gaps = 41/354 (11%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V K   + + +V N+L+  YS       A  VF +    D VS+NS+I+G  + G    
Sbjct: 238 LVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDG 297

Query: 61  GLKLFDKMPQ----------------------------------RNDVSWNSILGG---- 82
            L+LF KM +                                  +  +S + I+ G    
Sbjct: 298 ALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLD 357

Query: 83  -LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
             V    +  A  +F      ++V W V++  F +     E+  +FR+MQ   L PN   
Sbjct: 358 LYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFT 417

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
             S+L  C  +GALD G  +++ + K   + +  +C+ LIDMYAK G +D A  +  +  
Sbjct: 418 YPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLT 477

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
           + DV ++T+ I G A +    EA + F+ M ++GI  D+I + + +SAC+ +  + +G  
Sbjct: 478 EDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQG-R 536

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
             H+   V G   +L     +V L  R G ++EA      +  K D++ W  L+
Sbjct: 537 QIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAK-DSISWNGLI 589



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 126/271 (46%), Gaps = 13/271 (4%)

Query: 53  VRNGEILEGLKLFDKMPQ----RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWV 108
           + +G ++E  KL  K+ +       V  N ++      G +D   +VF  MP RS+ SW 
Sbjct: 21  LNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDMPNRSVRSWD 80

Query: 109 VLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA--QLGALDYGNWVYSYIQ 166
            +ISGF +       L LF  M   ++ P      S+L AC+  ++G + Y   +++ I 
Sbjct: 81  KIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIG-IRYAEQIHARII 139

Query: 167 KKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFE 226
              +    I+   LI +YAK G I  A +VF +   KD  ++ + I G + NG+  EA  
Sbjct: 140 CHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIH 199

Query: 227 LFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYAC--MVD 284
           LF  M + GI P    + +VLS C+ +   + G    H++   +G    L+ Y C  +V 
Sbjct: 200 LFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVG-EQLHALVFKYG--SSLETYVCNALVT 256

Query: 285 LLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
           L  R      AE   + M  K D V + +L+
Sbjct: 257 LYSRMPNFVSAEKVFSKMQSK-DEVSFNSLI 286



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 100/205 (48%), Gaps = 23/205 (11%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           M++K  F  D+ V N+LI FY+ CG + DAR  F E  + + VSWN+MI GY ++G   E
Sbjct: 642 MIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPEKNDVSWNAMITGYSQHGYGNE 701

Query: 61  GLKLFDKMPQ----RNDVSWNSILGGLVRFGSVDDACRVFNQM-------PKRSLVSWVV 109
            + LF+KM Q     N V++  +L      G V      F  M       PK +  + VV
Sbjct: 702 AVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKGLGYFESMSKEHGLVPKPAHYACVV 761

Query: 110 -LIS--GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQ 166
            LIS  GF    R        + ++ + +EP++ I  +LLSAC     ++ G +   ++ 
Sbjct: 762 DLISRAGFLSRAR--------KFIEEMPIEPDATIWRTLLSACTVHKNVEVGEFAAQHLL 813

Query: 167 KKCIKLDSILCAALIDMYAKCGSID 191
           +   + DS     L +MYA  G  D
Sbjct: 814 ELEPE-DSATYVLLSNMYAVSGKWD 837



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 80/186 (43%), Gaps = 1/186 (0%)

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
           M+   +  N    + LL  C   G+L     ++  I K     +S+LC  L+D+Y   G 
Sbjct: 1   MEHRGICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGD 60

Query: 190 IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
           +D  ++VF    ++ V ++   I G      S    +LF  M  + +SP  IS+ +VL A
Sbjct: 61  LDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRA 120

Query: 250 CSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNV 309
           CS      +     H+    HG+         ++ L  + GL+  A     ++  K D+V
Sbjct: 121 CSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTK-DSV 179

Query: 310 IWGTLL 315
            W  ++
Sbjct: 180 SWVAMI 185


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/550 (36%), Positives = 318/550 (57%), Gaps = 42/550 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDL-DVVSWNSMINGYVRNGEILE 60
           VVK  F +D  ++ +L+  YS C  + DA  +F E+  L +VVSW +MI+G+++N    E
Sbjct: 325 VVKYGFVFDQNIRTALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEE 384

Query: 61  GLKLFDKMPQR----NDVSWNSILGGL-------------------------------VR 85
            + LF +M ++    N+ +++ IL  L                               V+
Sbjct: 385 AVGLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVK 444

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
            G VD+A +VF+ +  + +V+W  +++G+AQ G  + A+ +F E+    ++PN     S+
Sbjct: 445 LGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSI 504

Query: 146 LSACAQLGA-LDYGNWVYSYIQKKCIKLDSILC--AALIDMYAKCGSIDLAMQVFHSYGD 202
           L+ CA   A +  G   + +  K   +LDS LC  +AL+ MYAK G I+ A +VF    +
Sbjct: 505 LNVCAATTASMGQGKQFHGFAIKS--RLDSSLCVSSALLTMYAKKGHIESAEEVFKRQRE 562

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           KD+ ++ S I G A +G +++A ++F+ MK + +  DS+++I V +AC+H G VE+G  Y
Sbjct: 563 KDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDSVTFIGVFAACTHAGLVEEGEKY 622

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F  M     I P  +H +CMVDL  RAG LE+A   I +MP    + IW T+L ACRVH+
Sbjct: 623 FDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIDNMPNLAGSTIWRTILAACRVHK 682

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
             E+G+     +I         Y+LLSN+Y E+   +   +VRK M +R +K+ PG S I
Sbjct: 683 KTELGRLAAEKIIAMIPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWI 742

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E+    + FLAGDRSH    +IY   E++  ++K+ GY  +T  V+ DI++E KE V+  
Sbjct: 743 EVKNKTYAFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQ 802

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF-E 501
           HSE+LA+AFGLI T  GS + I+KN+R+C DCH  +KL++K+ +R+I +RD   +HHF  
Sbjct: 803 HSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHVVIKLIAKIEEREIVVRDSNRFHHFSS 862

Query: 502 DGSCSCLEYW 511
           DG CSC ++W
Sbjct: 863 DGVCSCGDFW 872



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/368 (28%), Positives = 170/368 (46%), Gaps = 53/368 (14%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +VVKN     + V NSLI  Y  CG VR AR +FD+++   VV+WNSMI+GY  NG  LE
Sbjct: 223 VVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLE 282

Query: 61  GLKLFDKMP----QRNDVSWNSILG----------------GLVRFG------------- 87
            L +F  M     + ++ S+ SI+                  +V++G             
Sbjct: 283 ALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMV 342

Query: 88  ------SVDDACRVFNQMP-KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
                 ++ DA R+F +     ++VSW  +ISGF QN   +EA+ LF EM+   + PN  
Sbjct: 343 AYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEF 402

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
               +L+A   +   +    V++ + K   +  S +  AL+D Y K G +D A +VF   
Sbjct: 403 TYSVILTALPVISPSE----VHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGI 458

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
            +KD+ A+++ + G A  G +  A ++F  +   G+ P+  ++ ++L+ C+         
Sbjct: 459 DNKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQG 518

Query: 261 YYFHSMFDVHGIKPELDHYAC----MVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLG 316
             FH       IK  LD   C    ++ +  + G +E AE        K D V W +++ 
Sbjct: 519 KQFHGF----AIKSRLDSSLCVSSALLTMYAKKGHIESAEEVFKRQREK-DLVSWNSMIS 573

Query: 317 ACRVHRNA 324
               H  A
Sbjct: 574 GYAQHGQA 581



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 134/287 (46%), Gaps = 40/287 (13%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +K  F  DV V  SL+  Y      +D R VFDE  + +VV+W ++I+GY RN    E L
Sbjct: 124 IKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTLISGYARNSLNEEVL 183

Query: 63  KLFDKM----PQRNDVSWNSILGGL----------------------------------- 83
            LF +M     Q N  ++ + LG L                                   
Sbjct: 184 TLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLY 243

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
           ++ G+V  A  +F++   +S+V+W  +ISG+A NG   EAL +F  M+   +  + +   
Sbjct: 244 LKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHVRLSESSFA 303

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD- 202
           S++  CA L  L +   ++  + K     D  +  AL+  Y+KC ++  A+++F   G  
Sbjct: 304 SIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDALRLFKETGFL 363

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
            +V ++T+ I G   N    EA  LF  MK KG+ P+  +Y  +L+A
Sbjct: 364 GNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTA 410



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 124/267 (46%), Gaps = 39/267 (14%)

Query: 26  RVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLF---DKMPQRNDVS-WNSILG 81
           R+  A  +FD+S D D  S+ S++ G+ R+G   E  +LF     +    D S ++S+L 
Sbjct: 46  RLYYAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLK 105

Query: 82  ----------------GLVRFGSVDDAC-------------------RVFNQMPKRSLVS 106
                             ++FG +DD                      VF++M +R++V+
Sbjct: 106 VSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVT 165

Query: 107 WVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQ 166
           W  LISG+A+N   +E L LF  MQ    +PNS    + L   A+ G    G  V++ + 
Sbjct: 166 WTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVV 225

Query: 167 KKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFE 226
           K  +     +  +LI++Y KCG++  A  +F     K V  + S I G A NG  +EA  
Sbjct: 226 KNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALG 285

Query: 227 LFENMKSKGISPDSISYIAVLSACSHL 253
           +F +M+   +     S+ +++  C++L
Sbjct: 286 MFYSMRLNHVRLSESSFASIIKLCANL 312



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 108/228 (47%), Gaps = 10/228 (4%)

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           A  +F++ P R   S+  L+ GF+++GR +EA  LF  +Q L +E + +I  S+L   A 
Sbjct: 50  AHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKVSAT 109

Query: 152 LGALDYGNWVYSYIQKKCIKL----DSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSA 207
           L    +G  ++     +CIK     D  +  +L+D Y K  +      VF    +++V  
Sbjct: 110 LCDELFGRQLHC----QCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVT 165

Query: 208 YTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMF 267
           +T+ I G A N  + E   LF  M+ +G  P+S ++ A L   +  G   +G    H++ 
Sbjct: 166 WTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGL-QVHTVV 224

Query: 268 DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
             +G+   +     +++L  + G + +A        +K   V W +++
Sbjct: 225 VKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVK-SVVTWNSMI 271


>gi|218200771|gb|EEC83198.1| hypothetical protein OsI_28453 [Oryza sativa Indica Group]
          Length = 639

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/376 (47%), Positives = 245/376 (65%), Gaps = 1/376 (0%)

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCI 170
           ++GF   G  +EAL LF  MQ+  + P+  +LV +L ACAQLG L+ G WV+ Y++   I
Sbjct: 108 LAGFLLAGDGREALGLFARMQADGVIPDDTVLVGVLVACAQLGVLEQGKWVHGYLKANNI 167

Query: 171 KLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFEN 230
           ++   L  AL+DMYAKCG + LAM+VF    +K+V A+T+ I GLAM+G   EA ELF  
Sbjct: 168 RITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQ 227

Query: 231 MKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAG 290
           M+  G+ PD I++I  L AC+H G V+KG   F SM   +GIKP+++HY CMVDLL R G
Sbjct: 228 MERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNG 287

Query: 291 LLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSN 350
           LL EA   +  MPMKPD +IWG L+  CR H+N E+ + +    IE + +  G Y+LL N
Sbjct: 288 LLNEAREMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVVKHWIELEPDKSGAYVLLGN 347

Query: 351 IYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEE 410
           IY  + +  +A E+R  MR++ + + PGCS +E+ GV+H+F+ GD SH   +EI   W+E
Sbjct: 348 IYAASGRHASAREIRHLMREKGVDKTPGCSTVEIKGVIHQFIVGDLSHPFIEEILSKWDE 407

Query: 411 IVKKIK-NYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIR 469
           I  +I+   GY  + + V+ DIEEEEKE  +  HSEK+A+AF LI T     IRIVKN+R
Sbjct: 408 IDSRIRLEEGYVPDKKEVLLDIEEEEKENALSRHSEKMAIAFALINTSDDMPIRIVKNLR 467

Query: 470 ICSDCHSAMKLVSKVF 485
           +C DCH   KL+SKVF
Sbjct: 468 VCHDCHHVTKLISKVF 483



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 35/165 (21%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           G +  A  VF  M ++++++W  +I G A +GR  EAL LF +M+ L ++P+    +  L
Sbjct: 185 GEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGAL 244

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD-V 205
            AC   G +D G  ++  + +K                               YG K  +
Sbjct: 245 CACTHTGLVDKGRELFDSMVRK-------------------------------YGIKPKI 273

Query: 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250
             Y   +  LA NG   EA E+ E M  K   PD++ + A+++ C
Sbjct: 274 EHYGCMVDLLARNGLLNEAREMVEKMPMK---PDALIWGALMAGC 315



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 102/214 (47%), Gaps = 21/214 (9%)

Query: 5   NSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKL 64
           N+    VF+  +L+  Y+ CG ++ A  VF    + +V++W +MI G   +G   E L+L
Sbjct: 165 NNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALEL 224

Query: 65  FDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLISGFA 115
           F +M     + +D+++   L      G VD    +F+ M ++      +  +  ++   A
Sbjct: 225 FSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLA 284

Query: 116 QNGRPKEALALFREM-QSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDS 174
           +NG   EA    REM + + ++P++ I  +L++ C     ++    +  Y+ K  I+L+ 
Sbjct: 285 RNGLLNEA----REMVEKMPMKPDALIWGALMAGCRFHKNVE----LAEYVVKHWIELEP 336

Query: 175 ILCAALI---DMYAKCGSIDLAMQVFHSYGDKDV 205
               A +   ++YA  G    A ++ H   +K V
Sbjct: 337 DKSGAYVLLGNIYAASGRHASAREIRHLMREKGV 370


>gi|413945386|gb|AFW78035.1| hypothetical protein ZEAMMB73_343828 [Zea mays]
          Length = 608

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/519 (37%), Positives = 298/519 (57%), Gaps = 11/519 (2%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWV------FDESD-DLDVVSWNSMINGYV 53
           M+  ++   D FV  SL    S  GR+R  R        F  S    D V  +S+I+ Y 
Sbjct: 93  MLSDDALRPDHFVLASLA---SAAGRLRSLRLGRQLHAHFAASPYSADNVVKSSLIDMYC 149

Query: 54  RNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISG 113
           + G   +  K+FD +  +N V W +++ G    G   +A  +F  MP   L +W  LISG
Sbjct: 150 KCGVPQDARKVFDSIGVKNSVVWTALISGYASNGCTGEALDLFQSMPAHGLFTWTALISG 209

Query: 114 FAQNGRPKEALALFREMQSLDLEPNSA-ILVSLLSACAQLGALDYGNWVYSYIQKKCIKL 172
           F + G    A+ LF EM+  D+  + A +L +++   A L AL  G  ++ ++ +     
Sbjct: 210 FVKAGNYTGAMGLFVEMRRDDIRIHDAFVLATVIGGAADLAALVLGRQLHGFVMRLGFLS 269

Query: 173 DSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMK 232
             I+  AL+DMY+KC  I  A +VF     +DV ++T+ + G A +G + E F L+  M 
Sbjct: 270 SMIVGNALVDMYSKCSDIHSAREVFEGITVRDVISWTTILVGEAQHGRAEEVFALYNRML 329

Query: 233 SKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLL 292
             G+ P+ ++++ ++ ACSH G V+KG   F SM   +G+KP + HY C +DLL R+G L
Sbjct: 330 LAGMKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKREYGMKPGVQHYTCYLDLLSRSGYL 389

Query: 293 EEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIY 352
            EAE  I +MP +PD   WG LL AC+ H + +M  R+ + L+E        YILLSN+Y
Sbjct: 390 SEAEKLITTMPYEPDEATWGALLSACKKHNDTQMCLRVADNLLELRPKDPSTYILLSNVY 449

Query: 353 VETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIV 412
               K ++  +VRK M + +I++ PG S +E       F AG+   +  +EI  F EE+V
Sbjct: 450 AVNCKWDSVAKVRKIMAEMEIRKVPGYSWVEAGRESRIFHAGEVPLDVGEEITCFLEELV 509

Query: 413 KKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICS 472
            +++  GY  +T SVM D+EE EKE  +  HSE+LA+AFG++ + PGSVIR+VKN+R+C 
Sbjct: 510 SEMRKRGYVPDTSSVMHDLEEHEKEQHLFVHSERLAVAFGILKSPPGSVIRVVKNLRVCG 569

Query: 473 DCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           DCH+ MK +S + +RKI +RD   +HHFEDG+CSC E+W
Sbjct: 570 DCHTVMKFISAIAQRKIIVRDASRFHHFEDGNCSCSEFW 608



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 96/174 (55%), Gaps = 10/174 (5%)

Query: 89  VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD-LEPNSAILVSLLS 147
           + DA R F+  P+R L  +  L++  + +  P+  L L R M S D L P+  +L SL S
Sbjct: 52  LPDARRAFDDAPRRDLHLYSALLAAVSHSSDPELVLPLLRRMLSDDALRPDHFVLASLAS 111

Query: 148 ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSA 207
           A  +L +L  G  ++++        D+++ ++LIDMY KCG    A +VF S G K+   
Sbjct: 112 AAGRLRSLRLGRQLHAHFAASPYSADNVVKSSLIDMYCKCGVPQDARKVFDSIGVKNSVV 171

Query: 208 YTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
           +T+ I G A NG + EA +LF++M + G+     ++ A++S     G+V+ G Y
Sbjct: 172 WTALISGYASNGCTGEALDLFQSMPAHGL----FTWTALIS-----GFVKAGNY 216


>gi|224119910|ref|XP_002318193.1| predicted protein [Populus trichocarpa]
 gi|222858866|gb|EEE96413.1| predicted protein [Populus trichocarpa]
          Length = 533

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/534 (36%), Positives = 303/534 (56%), Gaps = 43/534 (8%)

Query: 20  FYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQR-------- 71
            Y+ CG   D R +FDE    D+V W +MI  Y +  +  E L LF KM Q         
Sbjct: 1   MYAKCGLFVDCRKIFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSI 60

Query: 72  ------------NDVS--------------------WNSILGGLVRFGSVDDACRVFNQM 99
                        DV                      NSIL    + G+ + A  VF+ M
Sbjct: 61  AVVSVASAVGQLGDVKNAHTVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLVFDMM 120

Query: 100 PKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGN 159
            +R ++SW  ++SG+ QNG+  EAL LF EM+  D +P     + ++SACA LG    G 
Sbjct: 121 MERDVISWNSMLSGYTQNGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYLGFRHLGR 180

Query: 160 WVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY--GDKDVSAYTSAIFGLAM 217
             + +I    +++D+ L  AL+DMYAKCG ++ A+ +F+     +++  ++   I G  M
Sbjct: 181 KFHDFIVDSRMEIDTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYGM 240

Query: 218 NGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELD 277
           +GH  EA ELF  M+ +G+ P+  ++ ++LSACSH G +++G   F  M  +  +  E  
Sbjct: 241 HGHGKEALELFSRMQEEGVEPNHFTFTSILSACSHAGLIDEGRKCFAEMKRL-SVTLEDK 299

Query: 278 HYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIES 337
           H+AC+VD+LGRAGLL+EA + I  MP  P + +WG LL AC++H N E+G+   + L++ 
Sbjct: 300 HHACVVDMLGRAGLLQEAFDLIKEMPSPPSDGVWGALLLACKIHGNMELGKTAASNLLQL 359

Query: 338 DQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRS 397
           + NH G Y+L+SNIY  + K +   ++R+ M+ + +K+    S+IE    +  F   D+ 
Sbjct: 360 EPNHTGYYVLMSNIYAASNKWKEVWKLRQDMKNKGLKKPAAFSMIEYGKDILGFHTADQE 419

Query: 398 HEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTK 457
           +    E+Y+  E +  ++K  GY  +    + D+EEE+KE ++ YHSEKLA+AFG++   
Sbjct: 420 NPYRHEVYKKMESLAIEMKMAGYVPDLSCALHDVEEEDKERMLNYHSEKLAVAFGVLKID 479

Query: 458 PGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           PG VIR+ KN+R+C+DCHSA K +S +++RKI +RD   +HHF+ G+CSC +YW
Sbjct: 480 PGMVIRVTKNLRVCNDCHSAFKYISHIYQRKIIVRDANRFHHFQGGTCSCKDYW 533



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 113/235 (48%), Gaps = 41/235 (17%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           + S   ++ V NS++  ++ CG    AR VFD   + DV+SWNSM++GY +NG+  E L 
Sbjct: 87  RKSLIEELCVGNSILAMHTKCGNTEKARLVFDMMMERDVISWNSMLSGYTQNGQATEALL 146

Query: 64  LFDKMP----QRNDVSW-----------------------------------NSILGGLV 84
           LFD+M     Q   V+                                    N+++    
Sbjct: 147 LFDEMRDSDCQPTPVTALIMVSACAYLGFRHLGRKFHDFIVDSRMEIDTNLSNALMDMYA 206

Query: 85  RFGSVDDACRVFNQMP--KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
           + G ++ A  +FN +P  +R+  SW VLISG+  +G  KEAL LF  MQ   +EPN    
Sbjct: 207 KCGDLEKAVDLFNGIPPTERNAGSWNVLISGYGMHGHGKEALELFSRMQEEGVEPNHFTF 266

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVF 197
            S+LSAC+  G +D G   ++ +++  + L+    A ++DM  + G +  A  + 
Sbjct: 267 TSILSACSHAGLIDEGRKCFAEMKRLSVTLEDKHHACVVDMLGRAGLLQEAFDLI 321



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 13/172 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFD--ESDDLDVVSWNSMINGYVRNGEIL 59
           +V +    D  + N+L+  Y+ CG +  A  +F+     + +  SWN +I+GY  +G   
Sbjct: 186 IVDSRMEIDTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYGMHGHGK 245

Query: 60  EGLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV----SWVVLI 111
           E L+LF +M +     N  ++ SIL      G +D+  + F +M + S+         ++
Sbjct: 246 EALELFSRMQEEGVEPNHFTFTSILSACSHAGLIDEGRKCFAEMKRLSVTLEDKHHACVV 305

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYS 163
               + G  +EA  L +EM S    P+  +  +LL AC   G ++ G    S
Sbjct: 306 DMLGRAGLLQEAFDLIKEMPS---PPSDGVWGALLLACKIHGNMELGKTAAS 354


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 182/515 (35%), Positives = 306/515 (59%), Gaps = 4/515 (0%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFD----ESDDLDVVSWNSMINGYVRNG 56
           M + N F  D+    S++Q     G +   ++V D       + D  + N +IN Y + G
Sbjct: 212 MEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCG 271

Query: 57  EILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQ 116
            +L   ++F  M  ++ VSWNS++   ++ G + D+ +VF  M  R +++W  +I+    
Sbjct: 272 NLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMKARDIITWNTIIASCVH 331

Query: 117 NGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSIL 176
           +      L +   M++  + P+ A ++S+L  C+ L A   G  ++  I K  ++ D  +
Sbjct: 332 SEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPV 391

Query: 177 CAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGI 236
              LI+MY+KCGS+  + QVF     KDV  +T+ I    M G   +A   F  M++ GI
Sbjct: 392 GNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGI 451

Query: 237 SPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAE 296
            PD ++++A++ ACSH G VE+G  YFH M   + I+P ++HYAC+VDLL R+ LL++AE
Sbjct: 452 VPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAE 511

Query: 297 NFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETL 356
           +FI SMP+KPD+ IWG LL ACR+  + E+ +R+   +IE + +  G Y+L+SNIY    
Sbjct: 512 DFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALG 571

Query: 357 KGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIK 416
           K +    +RK+++ R +K+ PGCS +E+   V+ F  G +  E+ +E+ +    +   + 
Sbjct: 572 KWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEEVNKLLGMLAGLMA 631

Query: 417 NYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHS 476
             GY    + V+ DI+E+EK  ++  HSE+LA+AFGL+ TKPG+ ++++KN+R+C DCH+
Sbjct: 632 KEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKPGTPLQVMKNLRVCEDCHT 691

Query: 477 AMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
             K +SK+ +R++ +RD   +H F+DG+CSC +YW
Sbjct: 692 VTKYISKIVQRELLVRDANRFHVFKDGACSCGDYW 726



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 113/238 (47%), Gaps = 12/238 (5%)

Query: 100 PKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGN 159
           P  ++  W  +I     NG   EAL+L+ E Q + L+P++    S+++ACA L   +   
Sbjct: 76  PSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 135

Query: 160 WVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNG 219
            ++  +       D  +  ALIDMY +   +D A +VF     +DV ++ S I G   NG
Sbjct: 136 SIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANG 195

Query: 220 HSIEAFE-------LFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGI 272
           +  EA E       LF  M ++   PD ++  ++L AC HLG +E G  Y H      G 
Sbjct: 196 YWNEALEIYYQSIKLFMEMVNQ-FKPDLLTITSILQACGHLGDLEFG-KYVHDYMITSGY 253

Query: 273 KPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
           + +      ++++  + G L  ++   + M  K D+V W +++      +N +MG  +
Sbjct: 254 ECDTTASNILINMYAKCGNLLASQEVFSGMKCK-DSVSWNSMINV--YIQNGKMGDSL 308


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 209/547 (38%), Positives = 315/547 (57%), Gaps = 51/547 (9%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           +V + N++I      G V+D++ +F    + D +SW +MI G ++NG   E + LF  M 
Sbjct: 203 NVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMR 262

Query: 70  QR----NDVSWNSIL---GGL---------------------VRFGS--VDDACR----- 94
           Q     +  ++ S+L   GGL                     V  GS  VD  C+     
Sbjct: 263 QEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVR 322

Query: 95  ----VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
               VF +M  +++VSW  ++ G+ QNG  +EA+ +F +MQ   +EP+   L S++S+CA
Sbjct: 323 YAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCA 382

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCA------ALIDMYAKCGSIDLAMQVFHSYGDKD 204
            L +L+ G       Q  C  L S L +      ALI +Y KCGSI+ + Q+F     +D
Sbjct: 383 NLASLEEG------AQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRD 436

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
             ++T+ + G A  G + E  +LFE M  +G+ PD++++IAVLSACS  G VE+G  YF 
Sbjct: 437 EVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFE 496

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
           SM   HGI P  DHY CM+DL GRAG LEEA+NFI  MP  PD++ W TLL +CR++ N 
Sbjct: 497 SMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATLLSSCRLYGNE 556

Query: 325 EMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIEL 384
           E+G+     L+E D  +   YILLS+IY    K  N  ++R+ MR++  ++ PG S I+ 
Sbjct: 557 EIGKWAAESLLELDPQNPAGYILLSSIYAAKGKWSNVAQLRRGMREKGARKEPGFSWIKY 616

Query: 385 DGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHS 444
              V+ F A D+S   + +IY   E++  K+   GY  +  SV+ D+E+ EK  ++ +HS
Sbjct: 617 KSKVYIFSADDQSSPFSDQIYAELEKLNHKMIEEGYVPDASSVLHDVEDSEKMKMLNHHS 676

Query: 445 EKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGS 504
           EKLA+AFGL+    G  IR+VKN+R+C DCH+A K +SK+ +R+I +RD   +H F+DG+
Sbjct: 677 EKLAIAFGLLFIPHGLPIRVVKNLRVCGDCHNATKYISKISQREILVRDAVRFHLFKDGT 736

Query: 505 CSCLEYW 511
           CSC ++W
Sbjct: 737 CSCGDFW 743



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 86/270 (31%), Positives = 152/270 (56%), Gaps = 2/270 (0%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           +S+++ Y + G +    ++FD++ +RN V +N+++ GL+R G V D+ R+F+ M +R  +
Sbjct: 177 SSLVDMYAKMGLVSVASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSI 236

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           SW  +I+G  QNG   EA+ LFR+M+   +  +     S+L+AC  L AL  G  +++ I
Sbjct: 237 SWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLI 296

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
            +     +  + +AL+DMY KC S+  A  VF    +K+V ++T+ + G   NG S EA 
Sbjct: 297 IRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAV 356

Query: 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL 285
            +F +M+  GI PD  +  +V+S+C++L  +E+G   FH    V G+   +     ++ L
Sbjct: 357 RVFCDMQRNGIEPDDFTLGSVISSCANLASLEEG-AQFHCQALVSGLISFITVSNALITL 415

Query: 286 LGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
            G+ G +E++      M  + D V W  L+
Sbjct: 416 YGKCGSIEDSNQLFDEMSFR-DEVSWTALV 444



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 163/320 (50%), Gaps = 11/320 (3%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +++K+    + F+ N+LI  YS  G +  AR VFD+    +  SWN+M++ Y ++G++  
Sbjct: 30  LIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSWNTMLSAYSKSGDLST 89

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSL-----VSWVVLISGFA 115
             ++F  MP R+ VSWNS++ G V +GSV +A + +N M K  +     +++  ++   +
Sbjct: 90  MQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRITFSTMLLLVS 149

Query: 116 QNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI 175
             G       +  ++          +  SL+   A++G +   + V+  +Q++ + + + 
Sbjct: 150 SQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMYNT 209

Query: 176 LCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG 235
           +   L+    + G +  + ++FH   ++D  ++T+ I GL  NG   EA +LF +M+ +G
Sbjct: 210 MITGLL----RSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEG 265

Query: 236 ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA 295
           ++ D  ++ +VL+AC  L  +++G    H++    G    +   + +VD+  +   +  A
Sbjct: 266 MAMDQYTFGSVLTACGGLRALKEG-KEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYA 324

Query: 296 ENFIASMPMKPDNVIWGTLL 315
           E     M  K + V W  +L
Sbjct: 325 EAVFKRMANK-NVVSWTAML 343



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 147/335 (43%), Gaps = 47/335 (14%)

Query: 45  WNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSL 104
           +N++IN Y + G I     +FDKMPQ N  SWN++L    + G +     +F+ MP R  
Sbjct: 43  YNNLINAYSKLGNITYARHVFDKMPQPNSFSWNTMLSAYSKSGDLSTMQEIFSIMPNRDG 102

Query: 105 VSWVVLISGFAQNGRPKEALALFREMQSLD-LEPNSAILVSLLSACAQLGALDYGNWVYS 163
           VSW  LISG+   G   EA+  +  M     L  N     ++L   +  G +D G  ++ 
Sbjct: 103 VSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRITFSTMLLLVSSQGCVDLGRQIHG 162

Query: 164 YIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIE 223
            I K        + ++L+DMYAK G + +A QVF    +++V  Y + I GL  +G   +
Sbjct: 163 QIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMYNTMITGLLRSGMVKD 222

Query: 224 AFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMV 283
           +  LF  MK +    DSIS+  +++                                   
Sbjct: 223 SKRLFHGMKER----DSISWTTMITG---------------------------------- 244

Query: 284 DLLGRAGLLEEAENFIASM---PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQN 340
             L + GL  EA +    M    M  D   +G++L AC   R  + G+ I  ++I S  N
Sbjct: 245 --LIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYN 302

Query: 341 HDGRYI--LLSNIYVETLKGENAEEVRKTMRKRKI 373
           H+  ++   L ++Y +      AE V K M  + +
Sbjct: 303 HN-VFVGSALVDMYCKCRSVRYAEAVFKRMANKNV 336



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 140/315 (44%), Gaps = 76/315 (24%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +++++ + ++VFV ++L+  Y  C  VR A  VF    + +VVSW +M+ GY +NG   E
Sbjct: 295 LIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEE 354

Query: 61  GLKLFDKMPQRNDVSWN--------------------------SILGGLVRF-------- 86
            +++F  M QRN +  +                          +++ GL+ F        
Sbjct: 355 AVRVFCDM-QRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSGLISFITVSNALI 413

Query: 87  ------GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
                 GS++D+ ++F++M  R  VSW  L+SG+AQ G+  E + LF  M    L+P++ 
Sbjct: 414 TLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAV 473

Query: 141 ILVSLLSACAQLGALDYGNWVY-SYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
             +++LSAC++ G ++ G   + S ++   I   S     +ID++ + G ++        
Sbjct: 474 TFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHYTCMIDLFGRAGRLE-------- 525

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
                                  EA      M     SPDSI +  +LS+C   G  E G
Sbjct: 526 -----------------------EAKNFINKMP---FSPDSIGWATLLSSCRLYGNEEIG 559

Query: 260 FYYFHSMFDVHGIKP 274
            +   S+ ++    P
Sbjct: 560 KWAAESLLELDPQNP 574


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/551 (35%), Positives = 312/551 (56%), Gaps = 41/551 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K  +   V+++  LI FY  C  +RDAR VFD   + +VVSW +MI+ Y + G   + 
Sbjct: 84  MIKTHYLPCVYLRTRLIVFYVKCDSLRDARHVFDVMPERNVVSWTAMISAYSQRGYASQA 143

Query: 62  LKLFDKM----PQRNDVSWNSILGGLV--------------------------------- 84
           L LF +M     + N+ ++ ++L   +                                 
Sbjct: 144 LSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLGRQIHSHIIKLNYEAHVYVGSSLLDM 203

Query: 85  --RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G + +A  +F  +P+R +VS   +ISG+AQ G  +EAL LFR +Q   ++ N    
Sbjct: 204 YAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQLGLDEEALELFRRLQREGMQSNYVTY 263

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S+L+A + L ALD+G  V++++ +  +    +L  +LIDMY+KCG++  A ++F +  +
Sbjct: 264 TSVLTALSGLAALDHGKQVHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYARRIFDTLHE 323

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENM-KSKGISPDSISYIAVLSACSHLGWVEKGFY 261
           + V ++ + + G + +G   E  ELF  M     + PDS++ +AVLS CSH G  +KG  
Sbjct: 324 RTVISWNAMLVGYSKHGEGREVLELFNLMIDENKVKPDSVTVLAVLSGCSHGGLEDKGMD 383

Query: 262 YFHSMFDVH-GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
            F+ M      ++P+  HY C+VD+LGRAG +E A  F+  MP +P   IWG LLGAC V
Sbjct: 384 IFYDMTSGKISVQPDSKHYGCVVDMLGRAGRVEAAFEFVKKMPFEPSAAIWGCLLGACSV 443

Query: 321 HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS 380
           H N ++G+ +G+ L++ +  + G Y++LSN+Y    + E+   +R  M K+ + + PG S
Sbjct: 444 HSNLDIGEFVGHQLLQIEPENAGNYVILSNLYASAGRWEDVRSLRNLMLKKAVTKEPGRS 503

Query: 381 LIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVI 440
            IELD V+H F A D SH + +E+    +E+  + K  GY  +   V+ D++EE+KE ++
Sbjct: 504 WIELDQVLHTFHASDCSHPRREEVSAKVQELSARFKEAGYVPDLSCVLHDVDEEQKEKIL 563

Query: 441 GYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF 500
             HSEKLAL FGLI T     IR++KN+RIC DCH+  K  SK++ R++S+RD+  +H  
Sbjct: 564 LSHSEKLALTFGLIATPESVPIRVIKNLRICVDCHNFAKYTSKIYGREVSLRDKNRFHRI 623

Query: 501 EDGSCSCLEYW 511
             G CSC +YW
Sbjct: 624 VGGKCSCGDYW 634



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 151/309 (48%), Gaps = 14/309 (4%)

Query: 39  DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRF----GSVDDACR 94
           D +   +N+++N  +R   I EG ++   M + + +    +   L+ F     S+ DA  
Sbjct: 55  DTNFQDYNTVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDARH 114

Query: 95  VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA 154
           VF+ MP+R++VSW  +IS ++Q G   +AL+LF +M     EPN     ++L++C     
Sbjct: 115 VFDVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSG 174

Query: 155 LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFG 214
              G  ++S+I K   +    + ++L+DMYAK G I  A  +F    ++DV + T+ I G
Sbjct: 175 FVLGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISG 234

Query: 215 LAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP 274
            A  G   EA ELF  ++ +G+  + ++Y +VL+A S L  ++ G          H ++ 
Sbjct: 235 YAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHG-----KQVHNHLLRS 289

Query: 275 ELDHYAC----MVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
           E+  Y      ++D+  + G L  A     ++  +   + W  +L     H        +
Sbjct: 290 EVPSYVVLQNSLIDMYSKCGNLTYARRIFDTLHER-TVISWNAMLVGYSKHGEGREVLEL 348

Query: 331 GNMLIESDQ 339
            N++I+ ++
Sbjct: 349 FNLMIDENK 357


>gi|296090522|emb|CBI40853.3| unnamed protein product [Vitis vinifera]
          Length = 749

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 204/512 (39%), Positives = 316/512 (61%), Gaps = 15/512 (2%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           +VFV ++L+  Y+  G++RDAR V D+    DVV + ++I GY  +GE  E L++F  M 
Sbjct: 212 NVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMT 271

Query: 70  QR----NDVSWNSILGGLVRFGSVDD--ACRVFNQMPKR----SLVSWVVLISGFAQNGR 119
           ++    N+ + +S+L   V  G+++D  + R+ + +  +    S V+W  +I G  QNGR
Sbjct: 272 KKGIEANEYTLSSVL---VCCGNLEDLTSGRLIHGLIVKAGLESAVTWTSVIVGLVQNGR 328

Query: 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
            + AL  FR+M    + PNS  L S+L AC+ L  L+ G  +++ + K  + +D  + AA
Sbjct: 329 EEIALLKFRQMLRSSITPNSFTLSSVLRACSSLAMLEQGKQIHAIVMKFGLDIDKYVGAA 388

Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
           LID Y KCGS ++A  VF+   + DV +  S I+  A NG   EA +LF  MK  G+ P+
Sbjct: 389 LIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMIYSYAQNGFGHEALQLFSGMKDTGLEPN 448

Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI 299
           +++++ VLSAC++ G +E+G + F S  +   I+   DHYACMVDLLGRAG L+EAE  I
Sbjct: 449 NVTWLGVLSACNNAGLLEEGCHIFSSARNSGNIELTKDHYACMVDLLGRAGRLKEAEMLI 508

Query: 300 ASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGE 359
             + +  D VIW TLL ACR+H + EM +R+ N +I+      G ++LLSN+Y  T    
Sbjct: 509 NQVNIS-DVVIWRTLLSACRIHGDVEMAKRVMNRVIDLAPEDGGTHVLLSNLYASTGNWS 567

Query: 360 NAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYG 419
              E++  MR+ ++K+ P  S ++++  +H F+AGD SH   ++I +  EE+++K+K  G
Sbjct: 568 KVIEMKSAMREMRLKKNPAMSWVDVEREIHTFMAGDWSHPNFRDIREKLEELIEKVKELG 627

Query: 420 YNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTK-PGSVIRIVKNIRICSDCHSAM 478
           Y  +TR V+ D++EE+K   + YHSEKLA+AF L  +    + IRI+KN+R+C DCH+ M
Sbjct: 628 YVPDTRFVLQDLDEEKKIRSLYYHSEKLAVAFALWRSNYKNTTIRILKNLRVCGDCHTWM 687

Query: 479 KLVSKVFKRKISIRDRKHYHHFEDGSCSCLEY 510
           K VSK+  R I  RD K +HHF +G CSC +Y
Sbjct: 688 KFVSKIVGRDIIARDVKRFHHFRNGLCSCGDY 719



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 83/174 (47%), Gaps = 13/174 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V+K     D +V  +LI FY  CG    AR VF+   ++DVVS NSMI  Y +NG   E
Sbjct: 373 IVMKFGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMIYSYAQNGFGHE 432

Query: 61  GLKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLI 111
            L+LF  M     + N+V+W  +L      G +++ C +F+       +      +  ++
Sbjct: 433 ALQLFSGMKDTGLEPNNVTWLGVLSACNNAGLLEEGCHIFSSARNSGNIELTKDHYACMV 492

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
               + GR KEA  L  ++   D+     I  +LLSAC   G ++    V + +
Sbjct: 493 DLLGRAGRLKEAEMLINQVNISDV----VIWRTLLSACRIHGDVEMAKRVMNRV 542



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 56/117 (47%), Gaps = 18/117 (15%)

Query: 161 VYSYIQKKCIKLDSI------------------LCAALIDMYAKCGSIDLAMQVFHSYGD 202
           +YS + ++CI + SI                  L   LID Y KCGS+  A +VF     
Sbjct: 80  LYSSLIQQCIGIKSITDITKIQSHALKRGFHHSLGNKLIDAYLKCGSVVYARKVFDEVPH 139

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
           + + A+ S I     NG S EA ++++ M   GI PD  ++ +V  A S LG V +G
Sbjct: 140 RHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPDEFTFSSVFKAFSDLGLVHEG 196


>gi|297824049|ref|XP_002879907.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325746|gb|EFH56166.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 565

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/537 (37%), Positives = 299/537 (55%), Gaps = 40/537 (7%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP----Q 70
           N LI  Y   G +  AR VFDE  D  + +WN+MI G ++     EGL LF +M      
Sbjct: 29  NILINGYVRAGDLVSARKVFDEMPDRKLTTWNAMIAGLIQFEYNEEGLSLFREMHGLGFS 88

Query: 71  RNDVSWNSILGG-----------------------------------LVRFGSVDDACRV 95
            ++ +  S+  G                                    +R G + D   V
Sbjct: 89  PDEYTLGSVFSGSAGLRSVSIGQQIHGYAIKYGLELDLVVNSSLAHMYMRNGKLQDGEIV 148

Query: 96  FNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGAL 155
              MP R+LV+W  LI G AQNG P+  L L++ M+     PN    V++LS+C+ L   
Sbjct: 149 IRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIR 208

Query: 156 DYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGL 215
             G  +++   K        + ++LI MY+KCG +  A + F    D+D   ++S I   
Sbjct: 209 GQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAY 268

Query: 216 AMNGHSIEAFELFENMKSKG-ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP 274
             +G   EA +LF +M  +  +  + ++++ +L ACSH G  +KG   F  M + +G KP
Sbjct: 269 GFHGQGDEAIKLFNSMAEQTEMEVNEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKP 328

Query: 275 ELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNML 334
            L HY C+VDLLGRAG L++AE  I SMP+KPD VIW TLL AC +H+NAEM Q++   +
Sbjct: 329 GLKHYTCVVDLLGRAGCLDQAEAIIKSMPIKPDPVIWKTLLSACNIHKNAEMAQKVFKEI 388

Query: 335 IESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAG 394
           +E D N    Y+LL+N++    +  +  EVRK+MR + +K+  G S  E  G VH+F  G
Sbjct: 389 LEIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMG 448

Query: 395 DRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLI 454
           DRS  K++EIY + +E+  ++K  GY  +T SV+ D++EEEKE+ +  HSEKLA+AF L+
Sbjct: 449 DRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALM 508

Query: 455 CTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
               G+ IRI+KN+R+CSDCH A K +S +  R+I++RD   +HHF +G CSC +YW
Sbjct: 509 ILPEGAPIRIIKNLRVCSDCHVAFKYISVIMNREITLRDGSRFHHFINGKCSCGDYW 565



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 148/302 (49%), Gaps = 2/302 (0%)

Query: 52  YVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLI 111
           Y + G++   + L+++M ++N +S N ++ G VR G +  A +VF++MP R L +W  +I
Sbjct: 4   YSKLGDLPSAVALYERMRKKNFMSSNILINGYVRAGDLVSARKVFDEMPDRKLTTWNAMI 63

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK 171
           +G  Q    +E L+LFREM  L   P+   L S+ S  A L ++  G  ++ Y  K  ++
Sbjct: 64  AGLIQFEYNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYAIKYGLE 123

Query: 172 LDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM 231
           LD ++ ++L  MY + G +     V  S   +++ A+ + I G A NG       L++ M
Sbjct: 124 LDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMM 183

Query: 232 KSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGL 291
           K  G  P+ I+++ VLS+CS L    +G    H+     G    +   + ++ +  + G 
Sbjct: 184 KISGCRPNKITFVTVLSSCSDLAIRGQG-QQIHAEAIKIGASSVVAVVSSLISMYSKCGC 242

Query: 292 LEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNI 351
           L +A    +      D V+W +++ A   H   +   ++ N + E  +        L+ +
Sbjct: 243 LGDAAKAFSERE-DEDEVMWSSMISAYGFHGQGDEAIKLFNSMAEQTEMEVNEVAFLNLL 301

Query: 352 YV 353
           Y 
Sbjct: 302 YA 303



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/239 (21%), Positives = 96/239 (40%), Gaps = 41/239 (17%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
            +K     D+ V +SL   Y   G+++D   V       ++V+WN++I G  +NG     
Sbjct: 117 AIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETV 176

Query: 62  LKLFDKMP----QRNDVSWNSILGG----------------------------------- 82
           L L+  M     + N +++ ++L                                     
Sbjct: 177 LYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISM 236

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM-QSLDLEPNSAI 141
             + G + DA + F++      V W  +IS +  +G+  EA+ LF  M +  ++E N   
Sbjct: 237 YSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIKLFNSMAEQTEMEVNEVA 296

Query: 142 LVSLLSACAQLGALDYGNWVYS-YIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
            ++LL AC+  G  D G  ++   ++K   K        ++D+  + G +D A  +  S
Sbjct: 297 FLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIKS 355


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 190/513 (37%), Positives = 296/513 (57%), Gaps = 34/513 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDES--DDLDVVSWNSMINGYVRNGEIL 59
           ++++   Y   V N+LI  Y+  G V +AR V  ++   DL+V+S+ +++ GY       
Sbjct: 321 ILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGY------- 373

Query: 60  EGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGR 119
                                   V+ G +  A  +F+ M  R +V+W  +I G+ QNG 
Sbjct: 374 ------------------------VKLGDMKHAREMFDVMSNRDVVAWTAMIVGYEQNGH 409

Query: 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
             EA+ LFR M     EPNS  + ++LS CA L  L+YG  ++    +   +  S +  +
Sbjct: 410 NDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQIHCKAIRSLQEQSSSVSNS 469

Query: 180 LIDMYAKCGSIDLAMQVF-HSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISP 238
           ++ MYA+ GS+  A +VF   +  K+   +TS I  LA +G   +A  LFE M   G+ P
Sbjct: 470 IVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQHGLGEDAVGLFEEMLRVGVKP 529

Query: 239 DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENF 298
           D I+++ VLSAC+H+G+V++G  YF  + D HGI PE+ HYACMVDLL RAGL  EA+ F
Sbjct: 530 DRITFVGVLSACTHVGFVDEGKRYFQQLQDKHGIVPEMSHYACMVDLLARAGLFSEAQEF 589

Query: 299 IASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKG 358
           I  MP++PD + WG+LL ACRVH+NA++ +     L+  D  + G Y  LSN+Y    + 
Sbjct: 590 IQQMPVEPDAIAWGSLLSACRVHKNADLAELAAEKLLSIDPGNSGAYSALSNVYSACGRW 649

Query: 359 ENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNY 418
            +A ++ K  + + +K+  G S   +   VH F A D  H +   +Y+   ++   IK  
Sbjct: 650 NDAAKIWKRRKDKSVKKETGFSWTHIGNRVHVFGADDVLHPQRDTVYRTAAKMWDDIKKA 709

Query: 419 GYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAM 478
           G+  + +SV+ D+++E KE ++  HSEKLA+AFGL+ T   + +RI+KN+R+C+DCH+A+
Sbjct: 710 GFVPDLQSVLHDVDDELKEEMLSRHSEKLAIAFGLVSTPEKTTLRIMKNLRVCNDCHTAI 769

Query: 479 KLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           K +SKV  R+I +RD   +HHF+DG CSC +YW
Sbjct: 770 KFISKVADREIILRDATRFHHFKDGFCSCKDYW 802



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 108/385 (28%), Positives = 156/385 (40%), Gaps = 99/385 (25%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VVK   +  V V NS++  Y  CG    AR VF+   +  V SWN+M++     G +   
Sbjct: 188 VVKLGLSSCVPVANSVLNMYGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLA 247

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
           L LF+ MP R  VSWN++                               I+G+ QNG   
Sbjct: 248 LSLFENMPDRTIVSWNAV-------------------------------IAGYNQNGLNA 276

Query: 122 EALALFREMQSLD-LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
           +AL  F  M S   + P+   + S+LSACA LG +  G  V++YI +  +     +  AL
Sbjct: 277 KALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQVTNAL 336

Query: 181 IDMYAKCGSI-------------DL--------------------AMQVFHSYGDKDVSA 207
           I MYAK GS+             DL                    A ++F    ++DV A
Sbjct: 337 ISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVMSNRDVVA 396

Query: 208 YTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG-------- 259
           +T+ I G   NGH+ EA ELF  M   G  P+S +  AVLS C+ L  +E G        
Sbjct: 397 WTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQIHCKAI 456

Query: 260 -----------------------FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAE 296
                                    +   +FD    + E   +  M+  L + GL E+A 
Sbjct: 457 RSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQHGLGEDAV 516

Query: 297 NFIASM---PMKPDNVIWGTLLGAC 318
                M    +KPD + +  +L AC
Sbjct: 517 GLFEEMLRVGVKPDRITFVGVLSAC 541



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 115/218 (52%), Gaps = 6/218 (2%)

Query: 60  EGLKLFDKMP--QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQN 117
           E  +LFD++P  QRN  +WNS+L    + G + DA  VF +MP+R  VSW V++ G  + 
Sbjct: 81  EARRLFDEIPAAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRV 140

Query: 118 GRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILC 177
           GR  EA+ +F +M +  L P    L ++LS+CA   A   G  V+S++ K  +     + 
Sbjct: 141 GRFGEAIKMFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVA 200

Query: 178 AALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGIS 237
            ++++MY KCG  + A  VF    ++ VS++ + +   A  G    A  LFENM  + I 
Sbjct: 201 NSVLNMYGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTI- 259

Query: 238 PDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE 275
              +S+ AV++  +  G   K  ++F  M     + P+
Sbjct: 260 ---VSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPD 294


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/513 (38%), Positives = 291/513 (56%), Gaps = 35/513 (6%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           V++    +VFV ++L+  Y+ C  V+ AR VFD                           
Sbjct: 260 VRHGMIENVFVCSALVSLYARCLSVKQARLVFD--------------------------- 292

Query: 63  KLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSL----VSWVVLISGFAQNG 118
                MP R+ VSWN +L         D    +F+QM  + +     +W  +I G  +NG
Sbjct: 293 ----LMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENG 348

Query: 119 RPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCA 178
           + ++A+ + R+MQ+L  +PN   + S L AC+ L +L  G  V+ Y+ +  +  D     
Sbjct: 349 QTEKAVEMLRKMQNLGFKPNQITISSFLPACSILESLRMGKEVHCYVFRHWLIGDLTTMT 408

Query: 179 ALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISP 238
           AL+ MYAKCG ++L+  VF     KDV A+ + I   AM+G+  E   LFE+M   GI P
Sbjct: 409 ALVYMYAKCGDLNLSRNVFDMICRKDVVAWNTMIIANAMHGNGREVLLLFESMLQSGIKP 468

Query: 239 DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENF 298
           +S+++  VLS CSH   VE+G   F+SM   H ++P+ +HYACMVD+  RAG L EA  F
Sbjct: 469 NSVTFTGVLSGCSHSRLVEEGLQIFNSMGRDHLVEPDANHYACMVDVFSRAGRLHEAYEF 528

Query: 299 IASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKG 358
           I  MPM+P    WG LLGACRV++N E+ +   N L E + N+ G Y+ L NI V     
Sbjct: 529 IQRMPMEPTASAWGALLGACRVYKNVELAKISANKLFEIEPNNPGNYVSLFNILVTAKLW 588

Query: 359 ENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNY 418
             A E R  M++R I + PGCS +++   VH F+ GD+++ ++ +IY F +E+ +K+K+ 
Sbjct: 589 SEASEARILMKERGITKTPGCSWLQVGDRVHTFVVGDKNNMESDKIYNFLDELGEKMKSA 648

Query: 419 GYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAM 478
           GY  +T  V+ DI++EEK   +  HSEKLA+AFG++     S IR+ KN+RIC DCH+A+
Sbjct: 649 GYKPDTDYVLQDIDQEEKAESLCSHSEKLAVAFGILNLNGQSSIRVFKNLRICGDCHNAI 708

Query: 479 KLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           K VSKV    I +RD   +HHF +G+CSC + W
Sbjct: 709 KYVSKVVGVTIIVRDSLRFHHFRNGNCSCQDLW 741



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 125/289 (43%), Gaps = 40/289 (13%)

Query: 25  GRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGL- 83
           G  R A+ +FD     D  + +++I+ +   G   E ++L+  +  R     NS+   + 
Sbjct: 80  GDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVA 139

Query: 84  -------------------VRFGSVDDA--------------C-----RVFNQMPKRSLV 105
                              +R G + DA              C     RVF+ +  + +V
Sbjct: 140 KACGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVV 199

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           SW  + S +   G P+  LA+F EM    ++PNS  L S+L AC++L  L  G  ++ + 
Sbjct: 200 SWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFA 259

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
            +  +  +  +C+AL+ +YA+C S+  A  VF     +DV ++   +     N    +  
Sbjct: 260 VRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGL 319

Query: 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP 274
            LF  M SKG+  D  ++ AV+  C   G  EK       M ++ G KP
Sbjct: 320 ALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNL-GFKP 367



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 141/317 (44%), Gaps = 17/317 (5%)

Query: 79  ILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPN 138
           +L   +  G    A ++F+ +P+    +   LIS F   G P EA+ L+  +++  ++P+
Sbjct: 72  LLKAALNVGDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPH 131

Query: 139 SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH 198
           +++ +++  AC   G       V+    +  +  D+ L  ALI  Y KC  ++ A +VF 
Sbjct: 132 NSVFLTVAKACGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFD 191

Query: 199 SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEK 258
               KDV ++TS        G       +F  M   G+ P+S++  ++L ACS L  ++ 
Sbjct: 192 DLVVKDVVSWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKS 251

Query: 259 GFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
           G    H     HG+   +   + +V L  R   +++A      MP + D V W  +L A 
Sbjct: 252 G-RAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHR-DVVSWNGVLTAY 309

Query: 319 RVHRNAEMGQRIGNML----IESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIK 374
             +R  + G  + + +    +E+D+     +  +    +E  + E A E+ + M+    K
Sbjct: 310 FTNREYDKGLALFSQMSSKGVEADE---ATWNAVIGGCMENGQTEKAVEMLRKMQNLGFK 366

Query: 375 R--------APGCSLIE 383
                     P CS++E
Sbjct: 367 PNQITISSFLPACSILE 383


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/542 (36%), Positives = 301/542 (55%), Gaps = 41/542 (7%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D+   N LI  YS CG V  AR VFDE     +VSWN+MI    +NGE  E L L  +M 
Sbjct: 98  DLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQM- 156

Query: 70  QRNDVSWN----------------------------------------SILGGLVRFGSV 89
           QR    ++                                        ++L    + G +
Sbjct: 157 QREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLM 216

Query: 90  DDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
            DA  VF  MP RS+V+W  + +G+ QN   ++ALALFR+     L+ +  ++ S++ AC
Sbjct: 217 KDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICAC 276

Query: 150 AQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYT 209
           A L A+  G  V + + K     +  + ++LIDMYAKCG I+ + +VF     ++V  + 
Sbjct: 277 AGLAAMIEGKQVNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWN 336

Query: 210 SAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDV 269
           + I GL+ +  S+E   LFE M+  G+SP+ +++++VLSAC H+G V+KG  YF  M   
Sbjct: 337 AMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVKKGQKYFDLMTKE 396

Query: 270 HGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQR 329
           H + P + HY+CMVD L RAG + EA + I+ +P      +WG+LL +CR H N E+ + 
Sbjct: 397 HHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGNLELAEV 456

Query: 330 IGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVH 389
               L + + ++ G Y+LLSN+Y    K +   ++RK +++  +K+  G S IE+   VH
Sbjct: 457 AAKKLFDIEPHNSGNYLLLSNMYAANGKWDEVAKMRKLLKESDVKKERGKSWIEIKDKVH 516

Query: 390 EFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLAL 449
            F+ G+R+H K  EIY    E++ +++  GY VET+  +  + E  K+ ++ +HSEKLA 
Sbjct: 517 LFMVGERNHPKIVEIYSKLNEVMDELQKLGYKVETQHDLHQVGESIKQELLRHHSEKLAF 576

Query: 450 AFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLE 509
             GL+   P + IRI+KN+RIC DCHS MKL SK F R + +RD   +HHF++G CSC +
Sbjct: 577 TMGLLFLPPNAPIRIMKNLRICGDCHSFMKLASKFFCRDVIVRDTNRFHHFKNGCCSCGD 636

Query: 510 YW 511
           +W
Sbjct: 637 FW 638



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 128/306 (41%), Gaps = 72/306 (23%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +K +   +VFV  +L+  Y+ CG ++DA  VF+   D  VV+W+SM  GYV+N    + L
Sbjct: 192 IKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQAL 251

Query: 63  KLFDKMPQR---------------------------------------NDVSWNSILGGL 83
            LF K  +                                        N    +S++   
Sbjct: 252 ALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVASSLIDMY 311

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
            + G ++++ +VF  + KR++V W  +ISG +++ R  E + LF +MQ + L PN    V
Sbjct: 312 AKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFV 371

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           S+LSAC  +G +  G   +  + K+                       LA  VFH     
Sbjct: 372 SVLSACGHMGLVKKGQKYFDLMTKE---------------------HHLAPNVFH----- 405

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
               Y+  +  L+  G   EA++L   +     +  +  + ++L++C   G +E      
Sbjct: 406 ----YSCMVDTLSRAGQIFEAYDLISKLP---FNASASMWGSLLASCRTHGNLELAEVAA 458

Query: 264 HSMFDV 269
             +FD+
Sbjct: 459 KKLFDI 464



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 87/165 (52%), Gaps = 12/165 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++ K+ F  ++FV +SLI  Y+ CG + ++  VF + +  +VV WN+MI+G  R+   LE
Sbjct: 291 LLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLE 350

Query: 61  GLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLI 111
            + LF+KM Q     NDV++ S+L      G V    + F+ M K      ++  +  ++
Sbjct: 351 VMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMV 410

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALD 156
              ++ G+  EA  L   +  L    ++++  SLL++C   G L+
Sbjct: 411 DTLSRAGQIFEAYDL---ISKLPFNASASMWGSLLASCRTHGNLE 452



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 80/174 (45%), Gaps = 10/174 (5%)

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           +L  CA+   L  G   ++ I    +K D +    LI+MY+KCGS+D A QVF     + 
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRS 129

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           + ++ + I  L  NG   EA +L   M+ +G      +  +VL AC+    + +      
Sbjct: 130 LVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSEC----- 184

Query: 265 SMFDVHGIKPELDH----YACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTL 314
            +     IK  +D        ++D+  + GL+++A     SMP +   V W ++
Sbjct: 185 QLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDR-SVVTWSSM 237


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 188/548 (34%), Positives = 307/548 (56%), Gaps = 38/548 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++ + +  D    N LI  Y+ CG +  ++ VF      D VSWNSMIN Y++NG   E 
Sbjct: 401 MITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEA 460

Query: 62  LKLFDKMP--------------------------------------QRNDVSWNSILGGL 83
           +KLF  M                                         N V  N+++   
Sbjct: 461 MKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVSNTLVDMY 520

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
            + G + D+ +VF  M  R +++W  +I+    +      L +   M++  + P+ A ++
Sbjct: 521 AKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATML 580

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           S+L  C+ L A   G  ++  I K  ++ D  +   LI+MY+KCGS+  + QVF     K
Sbjct: 581 SILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTK 640

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           DV  +T+ I    M G   +A   F  M++ GI PD ++++A++ ACSH G VE+G  YF
Sbjct: 641 DVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYF 700

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
           H M   + I+P ++HYAC+VDLL R+ LL++AE+FI SMP+KPD+ IWG LL ACR+  +
Sbjct: 701 HRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGD 760

Query: 324 AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE 383
            E+ QR+   +IE + +  G Y+L+SN+Y    K +    +RK+++ R +K+ PGCS +E
Sbjct: 761 TEIAQRVSERIIELNPDDTGYYVLVSNVYAALGKWDQVRSIRKSIKARGLKKDPGCSWME 820

Query: 384 LDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYH 443
           +   V+ F  G +  E+ +E+ +    +   +   GY    + V+ DI+E+EK  ++  H
Sbjct: 821 IQNKVYVFGTGTKFSEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGH 880

Query: 444 SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
           SE+LA+AFGL+ TKPG+ ++++KN+R+C DCH+  K +SK+ +R++ +RD   +H F+DG
Sbjct: 881 SERLAIAFGLLNTKPGTPLQVMKNLRVCEDCHTVTKYISKIXQRELLVRDANRFHVFKDG 940

Query: 504 SCSCLEYW 511
           +CSC +YW
Sbjct: 941 ACSCGDYW 948



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 104/368 (28%), Positives = 177/368 (48%), Gaps = 43/368 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+   F  D+++ N+LI  Y     +  AR VF+E    DVVSWNS+I+GY  NG   E 
Sbjct: 200 VLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEA 259

Query: 62  LKLF--------------------------------------DKMPQRNDVSWNS-ILGG 82
           L+++                                      +K+  + DV  N+ +L  
Sbjct: 260 LEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSM 319

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             +F  + D  R+F++M  R  VSW  +I G++Q G  +E++ LF EM +   +P+   +
Sbjct: 320 YCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVN-QFKPDLLTI 378

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S+L AC  LG L++G +V+ Y+     + D+     LI+MYAKCG++  + +VF     
Sbjct: 379 TSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKC 438

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           KD  ++ S I     NG   EA +LF+ MK+  + PDS++Y+ +LS  + LG +  G   
Sbjct: 439 KDSVSWNSMINVYIQNGSFDEAMKLFKMMKTD-VKPDSVTYVMLLSMSTQLGDLXLG-KE 496

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
            H      G    +     +VD+  + G + ++     +M  + D + W T++ +C    
Sbjct: 497 LHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKAR-DIITWNTIIASCVHSE 555

Query: 323 NAEMGQRI 330
           +  +G R+
Sbjct: 556 DCNLGLRM 563



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/367 (24%), Positives = 165/367 (44%), Gaps = 41/367 (11%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++ K     DV V N L+  Y     + D R +FD+    D VSWN+MI GY + G   E
Sbjct: 300 LIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEE 359

Query: 61  GLKLFDKMPQR--------------------------------------NDVSWNSILGG 82
            +KLF +M  +                                      +  + N ++  
Sbjct: 360 SIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINM 419

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G++  +  VF+ M  +  VSW  +I+ + QNG   EA+ LF+ M++ D++P+S   
Sbjct: 420 YAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKT-DVKPDSVTY 478

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           V LLS   QLG L  G  ++  + K     + ++   L+DMYAKCG +  +++VF +   
Sbjct: 479 VMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKA 538

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           +D+  + + I     +        +   M+++G++PD  + +++L  CS L    +G   
Sbjct: 539 RDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEI 598

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
              +F + G++ ++     ++++  + G L  +      M  K D V W  L+ AC ++ 
Sbjct: 599 HGCIFKL-GLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTK-DVVTWTALISACGMYG 656

Query: 323 NAEMGQR 329
             +   R
Sbjct: 657 EGKKAVR 663



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 133/304 (43%), Gaps = 35/304 (11%)

Query: 100 PKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGN 159
           P  ++  W  +I     NG   EAL+L+ E Q + L+P++    S+++ACA L   +   
Sbjct: 135 PSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 194

Query: 160 WVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNG 219
            ++  +       D  +  ALIDMY +   +D A +VF     +DV ++ S I G   NG
Sbjct: 195 SIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANG 254

Query: 220 HSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE---- 275
           +  EA E++   ++ G+ PDS +  +VL AC  LG VE+G    H + +  GIK +    
Sbjct: 255 YWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEG-DIIHGLIEKIGIKKDVIVN 313

Query: 276 ---LDHYA------------------------CMVDLLGRAGLLEEAENFIASM--PMKP 306
              L  Y                          M+    + GL EE+      M    KP
Sbjct: 314 NGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQFKP 373

Query: 307 DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYI-LLSNIYVETLKGENAEEVR 365
           D +   ++L AC    + E G+ + + +I S    D     +L N+Y +      ++EV 
Sbjct: 374 DLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVF 433

Query: 366 KTMR 369
             M+
Sbjct: 434 SGMK 437



 Score = 47.4 bits (111), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 105/249 (42%), Gaps = 10/249 (4%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKE---ALALF-REMQS 132
           N  +GG +R    D +CR ++ +     +   V  SG   + + +E   +  LF R M++
Sbjct: 3   NKTIGGCIRTPCPDASCRYYDWIKNLYELKSRVHSSGNYVDHQRREFYTSTKLFSRVMKT 62

Query: 133 LDL--EPNSAILVSLLS-ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
           L +  E +   L S +S A A        + ++S I    +    I  A LI  YA    
Sbjct: 63  LRVLHECSRQTLFSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRD 122

Query: 190 IDLAMQVFH-SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248
              +  VF  +    +V  + S I  L  NG   EA  L+   +   + PD+ ++ +V++
Sbjct: 123 PTSSFSVFRLASPSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVIN 182

Query: 249 ACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDN 308
           AC+ L   E      H      G   +L     ++D+  R   L++A      MP++ D 
Sbjct: 183 ACAGLLDFEMA-KSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLR-DV 240

Query: 309 VIWGTLLGA 317
           V W +L+  
Sbjct: 241 VSWNSLISG 249


>gi|414876354|tpg|DAA53485.1| TPA: hypothetical protein ZEAMMB73_494075 [Zea mays]
          Length = 830

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/552 (36%), Positives = 306/552 (55%), Gaps = 48/552 (8%)

Query: 7   FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFD 66
           F  D F+   LI+ Y+    +  AR VFDE+   ++  WN+M+          E L    
Sbjct: 280 FRSDPFLSTRLIEAYAALSALPAARQVFDEAPVKNIFVWNAMLKALALADHGEEALTCLA 339

Query: 67  KM---------------------------PQRNDVS-----------------WNSILGG 82
            M                           P    V                    +++  
Sbjct: 340 DMGRLGVPVDSYSYAHGLKACIAASASHLPASARVREMHAHAIRRGYGLHTHVATTLIDC 399

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQS--LDLEPNSA 140
             + G V  A RVF  MP R+LVSW  +I  +A+N RP +A+ +F+EM +   DL PNS 
Sbjct: 400 YAKLGIVSYAERVFTSMPDRNLVSWSAMIGCYAKNERPGDAIQIFQEMMASDADLVPNSI 459

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
            +VS+L ACA + AL  G  +++YI ++   L   +  AL+ MY KCG ++    +F+  
Sbjct: 460 TIVSVLHACAGVNALGQGKVLHAYILRRGFDLLVSVLNALMAMYMKCGCLETGRYIFNWI 519

Query: 201 GDK-DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
           G + +V ++ S I G  M+G   E+ ++FE M  +GISP+ I++++VL ACSH+G VE+G
Sbjct: 520 GRRRNVVSWNSLISGYGMHGFGRESLQVFEEMIEEGISPNIITFVSVLGACSHVGLVEQG 579

Query: 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACR 319
              F SM + + + P  +HYACMVDLLGRAG L+EA   I SM ++P   +WG+LLGACR
Sbjct: 580 KKLFESMVE-YNVTPRAEHYACMVDLLGRAGRLDEAVELIQSMRIQPSPQVWGSLLGACR 638

Query: 320 VHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGC 379
           +H + E  +   + L + +  + G Y+LL++IY         + +++ + +  +++ PGC
Sbjct: 639 IHGHVEYAEMACSHLFDLEPRNAGNYVLLADIYARAKLQNQVDVLKELLEEHALEKVPGC 698

Query: 380 SLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETV 439
           S IE+   ++ F++ D  + + +E+     E V ++KN GY  +TRSV++DIEEEEKE +
Sbjct: 699 SWIEVKKKLYSFVSVDNKNPQVEELQALIGEFVTQMKNEGYVPDTRSVLYDIEEEEKERI 758

Query: 440 IGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHH 499
           +  HSEKLA+AFGLI T  G  IRI KN+R+C DCHS  K +SK   R+I +RD   +HH
Sbjct: 759 LLGHSEKLAVAFGLIKTGSGEAIRITKNLRLCEDCHSVTKFISKFTDREIVVRDVNRFHH 818

Query: 500 FEDGSCSCLEYW 511
           F +G CSC +YW
Sbjct: 819 FRNGVCSCRDYW 830



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 91/173 (52%), Gaps = 12/173 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFD-ESDDLDVVSWNSMINGYVRNGEILE 60
           +++  F   V V N+L+  Y  CG +   R++F+      +VVSWNS+I+GY  +G   E
Sbjct: 484 ILRRGFDLLVSVLNALMAMYMKCGCLETGRYIFNWIGRRRNVVSWNSLISGYGMHGFGRE 543

Query: 61  GLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS----WVVLIS 112
            L++F++M +     N +++ S+LG     G V+   ++F  M + ++      +  ++ 
Sbjct: 544 SLQVFEEMIEEGISPNIITFVSVLGACSHVGLVEQGKKLFESMVEYNVTPRAEHYACMVD 603

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
              + GR  EA+ L   +QS+ ++P+  +  SLL AC   G ++Y     S++
Sbjct: 604 LLGRAGRLDEAVEL---IQSMRIQPSPQVWGSLLGACRIHGHVEYAEMACSHL 653


>gi|356550382|ref|XP_003543566.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 572

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 190/439 (43%), Positives = 278/439 (63%), Gaps = 4/439 (0%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136
           N +L     FG +  A  +F++MP R +VSW  +I G   +  P EA+ LF  M    +E
Sbjct: 134 NVLLHMYSEFGDLLLARSLFDRMPHRDVVSWTSMIGGLVNHDLPVEAINLFERMLQCGVE 193

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI--LCAALIDMYAKCGSIDLAM 194
            N A ++S+L ACA  GAL  G  V++ +++  I++ S   +  AL+DMYAK G I  A 
Sbjct: 194 VNEATVISVLRACADSGALSMGRKVHANLEEWGIEIHSKSNVSTALVDMYAKGGCIASAR 253

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
           +VF     +DV  +T+ I GLA +G   +A ++F +M+S G+ PD  +  AVL+AC + G
Sbjct: 254 KVFDDVVHRDVFVWTAMISGLASHGLCKDAIDMFVDMESSGVKPDERTVTAVLTACRNAG 313

Query: 255 WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTL 314
            + +GF  F  +   +G+KP + H+ C+VDLL RAG L+EAE+F+ +MP++PD V+W TL
Sbjct: 314 LIREGFMLFSDVQRRYGMKPSIQHFGCLVDLLARAGRLKEAEDFVNAMPIEPDTVLWRTL 373

Query: 315 LGACRVHRNAEMGQRIGNMLIESDQNHD--GRYILLSNIYVETLKGENAEEVRKTMRKRK 372
           + AC+VH +A+  +R+   L   D   D  G YIL SN+Y  T K  N  EVR+ M K+ 
Sbjct: 374 IWACKVHGDADRAERLMKHLEIQDMRADDSGSYILASNVYASTGKWCNKAEVRELMNKKG 433

Query: 373 IKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIE 432
           + + PG S IE+DG VHEF+ GD +H + +EI+    E+V KI+  GY+     V+ +++
Sbjct: 434 LVKPPGTSRIEVDGGVHEFVMGDYNHPEAEEIFVELAEVVDKIRKEGYDPRVSEVLLEMD 493

Query: 433 EEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIR 492
           +EEK   + +HSEKLALA+GLI    GS IRIVKN+R C DCH  MKL+SK++KR I +R
Sbjct: 494 DEEKAVQLLHHSEKLALAYGLIRIGHGSTIRIVKNLRSCEDCHEFMKLISKIYKRDIIVR 553

Query: 493 DRKHYHHFEDGSCSCLEYW 511
           DR  +HHF++G CSC +YW
Sbjct: 554 DRIRFHHFKNGECSCKDYW 572



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 142/304 (46%), Gaps = 45/304 (14%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++ K  FA D++++N L+  YS  G +  AR +FD     DVVSW SMI G V +   +E
Sbjct: 120 LLTKLGFAPDLYIQNVLLHMYSEFGDLLLARSLFDRMPHRDVVSWTSMIGGLVNHDLPVE 179

Query: 61  GLKLFDKMPQ----RNDVSWNSIL------GGL--------------------------- 83
            + LF++M Q     N+ +  S+L      G L                           
Sbjct: 180 AINLFERMLQCGVEVNEATVISVLRACADSGALSMGRKVHANLEEWGIEIHSKSNVSTAL 239

Query: 84  ----VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS 139
                + G +  A +VF+ +  R +  W  +ISG A +G  K+A+ +F +M+S  ++P+ 
Sbjct: 240 VDMYAKGGCIASARKVFDDVVHRDVFVWTAMISGLASHGLCKDAIDMFVDMESSGVKPDE 299

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSIL-CAALIDMYAKCGSIDLAMQVFH 198
             + ++L+AC   G +  G  ++S +Q++     SI     L+D+ A+ G +  A    +
Sbjct: 300 RTVTAVLTACRNAGLIREGFMLFSDVQRRYGMKPSIQHFGCLVDLLARAGRLKEAEDFVN 359

Query: 199 SYG-DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGI-SPDSISYIAVLSACSHLG-W 255
           +   + D   + + I+   ++G +  A  L ++++ + + + DS SYI   +  +  G W
Sbjct: 360 AMPIEPDTVLWRTLIWACKVHGDADRAERLMKHLEIQDMRADDSGSYILASNVYASTGKW 419

Query: 256 VEKG 259
             K 
Sbjct: 420 CNKA 423



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 108/247 (43%), Gaps = 10/247 (4%)

Query: 80  LGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK---EALALFREMQSLDLE 136
              L  FG ++ A  + +  P  +   +  L+  F+Q   P     AL+LF  M S    
Sbjct: 36  FAALSPFGDLNYARLLLSTNPTLNSYYYNTLLRAFSQTPLPTPPFHALSLFLSMPS---P 92

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
           P++     LL  C++      G  +++ + K     D  +   L+ MY++ G + LA  +
Sbjct: 93  PDNFTFPFLLKCCSRSKLPPLGKQLHALLTKLGFAPDLYIQNVLLHMYSEFGDLLLARSL 152

Query: 197 FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWV 256
           F     +DV ++TS I GL  +   +EA  LFE M   G+  +  + I+VL AC+  G +
Sbjct: 153 FDRMPHRDVVSWTSMIGGLVNHDLPVEAINLFERMLQCGVEVNEATVISVLRACADSGAL 212

Query: 257 EKGFYYFHSMFDVHGIK--PELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTL 314
             G    H+  +  GI+   + +    +VD+  + G +  A      +  + D  +W  +
Sbjct: 213 SMG-RKVHANLEEWGIEIHSKSNVSTALVDMYAKGGCIASARKVFDDVVHR-DVFVWTAM 270

Query: 315 LGACRVH 321
           +     H
Sbjct: 271 ISGLASH 277


>gi|224065723|ref|XP_002301939.1| predicted protein [Populus trichocarpa]
 gi|222843665|gb|EEE81212.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/540 (37%), Positives = 304/540 (56%), Gaps = 40/540 (7%)

Query: 12  FVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP-- 69
           F+ + L+  Y   G  +DA  +FDE  D D+VSWNS+I+G+ R  ++   L L  +M   
Sbjct: 74  FIGDQLVSSYVELGCTKDALELFDELPDKDLVSWNSLISGFSRRADLGICLGLLFRMRFE 133

Query: 70  ---QRNDVSW-----------------------------------NSILGGLVRFGSVDD 91
              + N+V+                                    NS++    + G ++ 
Sbjct: 134 MGLKPNEVTVIPVVSACAGVGELDVGKCIHGIAVKSGMLLEVKVVNSLINLYGKCGCLEA 193

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           AC +F  M  +SLVSW  +++     G  ++ +  F  M+   +  + A +VSLL AC  
Sbjct: 194 ACCLFEGMSVQSLVSWNSMVAVHVHMGLAEKGIGYFIMMRRAGINSDQATVVSLLLACEN 253

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSA 211
           LG       V+ YI    +  +  +  AL+D+YAK G++  + +VF    + D  A+T+ 
Sbjct: 254 LGVRKLAEAVHGYILNGGLDGNLAIATALLDLYAKLGTLSDSCKVFGGMINPDAVAWTAM 313

Query: 212 IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG 271
           +   AM+G   EA E FE M  +G+ PD +++  +LSACSH G VE+G  YF  M++ +G
Sbjct: 314 LSSYAMHGRGREAIEHFELMVREGVVPDHVTFTHLLSACSHSGLVEEGKNYFKIMYEFYG 373

Query: 272 IKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIG 331
           ++  ++HY+CMVDLLGR+G L +A   I SMPM+P++ +WG L+GACRV  N E+G+ + 
Sbjct: 374 VELRVEHYSCMVDLLGRSGHLNDAYKLIKSMPMEPNSGVWGALIGACRVRGNIELGKEVA 433

Query: 332 NMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEF 391
             L   D +    YI LSN+Y    +  +A +VR  M++R + R PGCS IE    +H F
Sbjct: 434 ERLFSLDPSDSRNYITLSNMYSAAGQWRDASKVRALMKERVLIRNPGCSYIEHGNKIHCF 493

Query: 392 LAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAF 451
           + GD+SH  T++IY   EE+V+K +  G+  +T  V+ D++EE KE +I  HSEKLA+AF
Sbjct: 494 VMGDQSHPDTEQIYNKLEELVRKNREVGFASKTEYVLHDVDEEVKEDLINKHSEKLAIAF 553

Query: 452 GLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           GL+ T  G  + I KNIRIC DCH   KL+S + KR I IRD K +HHF +G CSC +YW
Sbjct: 554 GLLVTNAGMPLIITKNIRICGDCHGFAKLISLIEKRTIIIRDTKRFHHFTNGLCSCGDYW 613



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 121/299 (40%), Gaps = 74/299 (24%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + VK+    +V V NSLI  Y  CG +  A  +F+      +VSWNSM+  +V  G   +
Sbjct: 165 IAVKSGMLLEVKVVNSLINLYGKCGCLEAACCLFEGMSVQSLVSWNSMVAVHVHMGLAEK 224

Query: 61  GLKLFDKMPQ----RNDVSWNSIL---------------------GGL------------ 83
           G+  F  M +     +  +  S+L                     GGL            
Sbjct: 225 GIGYFIMMRRAGINSDQATVVSLLLACENLGVRKLAEAVHGYILNGGLDGNLAIATALLD 284

Query: 84  --VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G++ D+C+VF  M     V+W  ++S +A +GR +EA+  F  M    + P+   
Sbjct: 285 LYAKLGTLSDSCKVFGGMINPDAVAWTAMLSSYAMHGRGREAIEHFELMVREGVVPDHVT 344

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
              LLSAC+  G ++ G   +  +                               +  YG
Sbjct: 345 FTHLLSACSHSGLVEEGKNYFKIM-------------------------------YEFYG 373

Query: 202 -DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
            +  V  Y+  +  L  +GH  +A++L ++M    + P+S  + A++ AC   G +E G
Sbjct: 374 VELRVEHYSCMVDLLGRSGHLNDAYKLIKSMP---MEPNSGVWGALIGACRVRGNIELG 429


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 209/600 (34%), Positives = 309/600 (51%), Gaps = 92/600 (15%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFD--------------------------- 35
           ++N    DVFV N+LI  Y+ CG + +A  VF+                           
Sbjct: 147 IRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAF 206

Query: 36  --------ESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM----PQRNDVSWNSILGGL 83
                   E+  LD+V+W ++I GY + G   E L +F +M       N V+  S+L   
Sbjct: 207 ELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSAC 266

Query: 84  VRFGSVDDA--------------------------------------CR-------VFNQ 98
              G+                                          CR       +F+ 
Sbjct: 267 ASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDD 326

Query: 99  MP--KRSLVSWVVLISGFAQNGRPKEALALFREM--QSLDLEPNSAILVSLLSACAQLGA 154
           +P  +R++V+W V+I G AQ G   +AL LF EM  +   + PN+  +  +L ACA L A
Sbjct: 327 IPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAA 386

Query: 155 LDYGNWVYSYIQKKCIKLDS---ILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSA 211
           +  G  +++Y+ +   + DS    +   LI+MY+KCG +D A  VF S   K   ++TS 
Sbjct: 387 IRIGKQIHAYVLRH-HQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSM 445

Query: 212 IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG 271
           + G  M+G   EA ++F+ M+  G  PD I+++ VL ACSH G V++G  YF SM   +G
Sbjct: 446 MTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYG 505

Query: 272 IKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIG 331
           + P  +HYA  +DLL R G L++A   +  MPM+P  V+W  LL ACRVH N E+ +   
Sbjct: 506 LTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHAL 565

Query: 332 NMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEF 391
           N L+E +  +DG Y L+SNIY    + ++   +R  M+K  IK+ PGCS ++       F
Sbjct: 566 NKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASF 625

Query: 392 LAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAF 451
             GDRSH  + +IY   E ++ +IK  GY  ET   + D++EEEK  ++  HSEKLALA+
Sbjct: 626 FVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAY 685

Query: 452 GLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           GL+ T PG  IRI KN+R+C DCHSA   +SK+   +I +RD   +HHF++GSCSC  YW
Sbjct: 686 GLLTTFPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 745



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 106/419 (25%), Positives = 181/419 (43%), Gaps = 99/419 (23%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDL---DVVSWNSMINGYVRNGE 57
           ++  N F  +VF+ N+L+  YS CG + +A  +FDE       DV+SWNS+++ +V++  
Sbjct: 35  LICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSN 94

Query: 58  ILEGLKLFDKM-------------------------------PQRNDVSWNSILGGL--- 83
               L LF KM                               PQ  +V  N+I  G    
Sbjct: 95  AWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLD 154

Query: 84  -----------VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQS 132
                       + G +++A +VFN M  + +VSW  +++G++Q+G  K A  LF+ M+ 
Sbjct: 155 VFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRK 214

Query: 133 LDLE-----------------------------------PNSAILVSLLSACAQLGALDY 157
            ++                                    PN   ++S+LSACA LGA   
Sbjct: 215 ENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQ 274

Query: 158 GNWVYSYIQKKCIKL----------DSILCAALIDMYAKCGSIDLAMQVFHSYG--DKDV 205
           G  +++Y  K C+            D ++  ALIDMY+KC S   A  +F      +++V
Sbjct: 275 GMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNV 334

Query: 206 SAYTSAIFGLAMNGHSIEAFELFENMKSK--GISPDSISYIAVLSACSHLGWVEKGFYYF 263
             +T  I G A  G S +A +LF  M S+  G++P++ +   +L AC+HL  +  G    
Sbjct: 335 VTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIH 394

Query: 264 HSMFDVHGIKPELDHYA-CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
             +   H         A C++++  + G ++ A +   SM  K   + W +++    +H
Sbjct: 395 AYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQK-SAISWTSMMTGYGMH 452



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 81/191 (42%), Gaps = 23/191 (12%)

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY- 200
           L  +L AC +L +   G+  +  I     + +  +C AL+ MY++CGS++ A  +F    
Sbjct: 13  LPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEIT 72

Query: 201 --GDKDVSAYTSAIFGLAMNGHSIEAFELFENM------KSKGISPDSISYIAVLSACSH 252
             G  DV ++ S +     + ++  A +LF  M      K      D IS + +L AC  
Sbjct: 73  QRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGS 132

Query: 253 LGWVEKGFYYFHSMFDVHGIKPE----LDHYA--CMVDLLGRAGLLEEAENFIASMPMKP 306
           L  V +         +VHG        LD +    ++D   + GL+E A      M  K 
Sbjct: 133 LKAVPQ-------TKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFK- 184

Query: 307 DNVIWGTLLGA 317
           D V W  ++  
Sbjct: 185 DVVSWNAMVAG 195


>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g18840-like [Vitis vinifera]
          Length = 536

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 171/394 (43%), Positives = 259/394 (65%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K     D+F++N+LI  Y+ CG + DAR + D   + DVVSWN++++ Y   G +   
Sbjct: 134 VLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELA 193

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
             LFD+M +RN  SWN ++ G V  G +++A RVF + P +++VSW  +I+G++  GR  
Sbjct: 194 CHLFDEMTERNVESWNFMISGYVGVGLLEEARRVFGETPVKNVVSWNAMITGYSHAGRFS 253

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
           E L LF +MQ   ++P++  LVS+LSACA +GAL  G WV++YI K  I +D  +  AL+
Sbjct: 254 EVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALV 313

Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
           DMY+KCGSI+ A++VF+S   KD+S + S I GL+ +G    A ++F  M  +G  P+ +
Sbjct: 314 DMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEV 373

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
           +++ VLSACS  G +++G   F+ M  VHGI+P ++HY CMVDLLGR GLLEEAE  +  
Sbjct: 374 TFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQK 433

Query: 302 MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361
           MP K  +V+W +LLGACR H N E+ +R+   L+E        ++ LSN+Y    + ++ 
Sbjct: 434 MPQKEASVVWESLLGACRNHGNVELAERVAQKLLELSPQESSSFVQLSNMYASMGRWKDV 493

Query: 362 EEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGD 395
            EVR+ MR + +++ PGCS+IE+DG V+EFLAG+
Sbjct: 494 MEVRQKMRAQGVRKDPGCSMIEVDGTVYEFLAGE 527



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/236 (22%), Positives = 100/236 (42%), Gaps = 16/236 (6%)

Query: 88  SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLS 147
           ++  A  +F+++P  +   W  +I  +A +  P+ AL +F +M    + P+       L 
Sbjct: 57  AIPYAHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALK 116

Query: 148 ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSA 207
           +C     ++ G  ++ ++ K  +  D  +   LI +YA CG I+ A  +     ++DV +
Sbjct: 117 SCGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVS 176

Query: 208 YTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMF 267
           + + +   A  G    A  LF+ M  + +     S+  ++S    +G +E+    F    
Sbjct: 177 WNALLSAYAERGLMELACHLFDEMTERNVE----SWNFMISGYVGVGLLEEARRVF---- 228

Query: 268 DVHGIKP--ELDHYACMVDLLGRAGLLEEAENFIASMP---MKPDNVIWGTLLGAC 318
              G  P   +  +  M+     AG   E       M    +KPDN    ++L AC
Sbjct: 229 ---GETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSAC 281


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 209/600 (34%), Positives = 309/600 (51%), Gaps = 92/600 (15%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFD--------------------------- 35
           ++N    DVFV N+LI  Y+ CG + +A  VF+                           
Sbjct: 254 IRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAF 313

Query: 36  --------ESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM----PQRNDVSWNSILGGL 83
                   E+  LD+V+W ++I GY + G   E L +F +M       N V+  S+L   
Sbjct: 314 ELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSAC 373

Query: 84  VRFGSVDDA--------------------------------------CR-------VFNQ 98
              G+                                          CR       +F+ 
Sbjct: 374 ASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDD 433

Query: 99  MP--KRSLVSWVVLISGFAQNGRPKEALALFREM--QSLDLEPNSAILVSLLSACAQLGA 154
           +P  +R++V+W V+I G AQ G   +AL LF EM  +   + PN+  +  +L ACA L A
Sbjct: 434 IPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAA 493

Query: 155 LDYGNWVYSYIQKKCIKLDS---ILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSA 211
           +  G  +++Y+ +   + DS    +   LI+MY+KCG +D A  VF S   K   ++TS 
Sbjct: 494 IRIGKQIHAYVLRH-HQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSM 552

Query: 212 IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG 271
           + G  M+G   EA ++F+ M+  G  PD I+++ VL ACSH G V++G  YF SM   +G
Sbjct: 553 MTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYG 612

Query: 272 IKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIG 331
           + P  +HYA  +DLL R G L++A   +  MPM+P  V+W  LL ACRVH N E+ +   
Sbjct: 613 LTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHAL 672

Query: 332 NMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEF 391
           N L+E +  +DG Y L+SNIY    + ++   +R  M+K  IK+ PGCS ++       F
Sbjct: 673 NKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASF 732

Query: 392 LAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAF 451
             GDRSH  + +IY   E ++ +IK  GY  ET   + D++EEEK  ++  HSEKLALA+
Sbjct: 733 FVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAY 792

Query: 452 GLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           GL+ T PG  IRI KN+R+C DCHSA   +SK+   +I +RD   +HHF++GSCSC  YW
Sbjct: 793 GLLTTFPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 852



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 106/419 (25%), Positives = 181/419 (43%), Gaps = 99/419 (23%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDL---DVVSWNSMINGYVRNGE 57
           ++  N F  +VF+ N+L+  YS CG + +A  +FDE       DV+SWNS+++ +V++  
Sbjct: 142 LICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSN 201

Query: 58  ILEGLKLFDKM-------------------------------PQRNDVSWNSILGGL--- 83
               L LF KM                               PQ  +V  N+I  G    
Sbjct: 202 AWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLD 261

Query: 84  -----------VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQS 132
                       + G +++A +VFN M  + +VSW  +++G++Q+G  K A  LF+ M+ 
Sbjct: 262 VFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRK 321

Query: 133 LDLE-----------------------------------PNSAILVSLLSACAQLGALDY 157
            ++                                    PN   ++S+LSACA LGA   
Sbjct: 322 ENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQ 381

Query: 158 GNWVYSYIQKKCIKL----------DSILCAALIDMYAKCGSIDLAMQVFHSYG--DKDV 205
           G  +++Y  K C+            D ++  ALIDMY+KC S   A  +F      +++V
Sbjct: 382 GMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNV 441

Query: 206 SAYTSAIFGLAMNGHSIEAFELFENMKSK--GISPDSISYIAVLSACSHLGWVEKGFYYF 263
             +T  I G A  G S +A +LF  M S+  G++P++ +   +L AC+HL  +  G    
Sbjct: 442 VTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIH 501

Query: 264 HSMFDVHGIKPELDHYA-CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
             +   H         A C++++  + G ++ A +   SM  K   + W +++    +H
Sbjct: 502 AYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQK-SAISWTSMMTGYGMH 559



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 110/269 (40%), Gaps = 27/269 (10%)

Query: 68  MPQRNDVSWNSILGGLVR----FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEA 123
           +P    +S  S+  G+V      G+ D A  V  ++     V W +LI    + GR   A
Sbjct: 42  LPSEPFISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSA 101

Query: 124 LALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDM 183
           + +   M       +   L  +L AC +L +   G+  +  I     + +  +C AL+ M
Sbjct: 102 INVSCRMLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAM 161

Query: 184 YAKCGSIDLAMQVFHSY---GDKDVSAYTSAIFGLAMNGHSIEAFELFENM------KSK 234
           Y++CGS++ A  +F      G  DV ++ S +     + ++  A +LF  M      K  
Sbjct: 162 YSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPT 221

Query: 235 GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE----LDHYA--CMVDLLGR 288
               D IS + +L AC  L  V +         +VHG        LD +    ++D   +
Sbjct: 222 NERSDIISIVNILPACGSLKAVPQ-------TKEVHGNAIRNGTFLDVFVGNALIDAYAK 274

Query: 289 AGLLEEAENFIASMPMKPDNVIWGTLLGA 317
            GL+E A      M  K D V W  ++  
Sbjct: 275 CGLMENAVKVFNMMEFK-DVVSWNAMVAG 302


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 205/552 (37%), Positives = 313/552 (56%), Gaps = 44/552 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNG-EILEG 61
           +K     DV V N+L+  Y+   R+ + + VF    + D VSWN++I     +G  + E 
Sbjct: 231 IKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQVSWNTVIGALADSGASVSEA 290

Query: 62  LKLFDKM------PQR---------------------------------NDVSWNSILGG 82
           +++F +M      P R                                 ++   N++L  
Sbjct: 291 IEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHALILKYNVKDDNAIENALLAC 350

Query: 83  LVRFGSVDDACRVFNQMP-KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
             + G +++   +F++M  +R  VSW  +ISG+  N    +A+ L   M       +   
Sbjct: 351 YGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHNELLCKAMDLVWLMMQRGQRLDCFT 410

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
             ++LSACA +  L+ G  V++   + C++ D ++ +AL+DMY+KCG ID A + F+   
Sbjct: 411 FATVLSACATVATLECGMEVHACAIRACLESDVVIGSALVDMYSKCGRIDYASRFFNLMP 470

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
            +++ ++ S I G A +GH   A  LF  MK  G  PD I+++ VLSACSH+G V++GF 
Sbjct: 471 VRNLYSWNSMISGYARHGHGDNALRLFTRMKLSGQLPDHITFVGVLSACSHIGLVDEGFE 530

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC--R 319
           YF SM +V+G+ P ++HY+CMVDLLGRAG L++ ENFI  MP+KP+ +IW T+LGAC   
Sbjct: 531 YFKSMTEVYGLVPRVEHYSCMVDLLGRAGELDKIENFINKMPIKPNILIWRTVLGACCRG 590

Query: 320 VHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGC 379
             R  E+G+R   ML   D  +   Y+LLSN+Y    K E+    R+ MR+  +K+  GC
Sbjct: 591 NGRKTELGRRAAEMLFNMDPQNAVNYVLLSNMYASGGKWEDMARTRRAMREAAVKKEAGC 650

Query: 380 SLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETV 439
           S + +   VH F+AGD SH +   IY   +E+ KKI++ GY  + +  ++D+E E KE +
Sbjct: 651 SWVTMKDGVHVFVAGDNSHPEKGLIYAKLKELDKKIRDAGYVPQIKFALYDLEPENKEEL 710

Query: 440 IGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHH 499
           + YHSEKLA+AF ++    G  IRI+KN+R+C DCHSA K +SKV  R I +RD   +HH
Sbjct: 711 LSYHSEKLAVAF-VLTRNSGLPIRIMKNLRVCGDCHSAFKYISKVVDRSIVLRDSNRFHH 769

Query: 500 FEDGSCSCLEYW 511
           FEDG CSC +YW
Sbjct: 770 FEDGKCSCRDYW 781



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 161/356 (45%), Gaps = 43/356 (12%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K+ F  D+F+ N+LI  Y   G    AR +FDE  D + V+W  +I+GY +NG   + 
Sbjct: 26  VLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMPEDA 85

Query: 62  LKLFDKM------PQR--------------------------------NDVS---WNSIL 80
             +  +M      P R                                ND      N ++
Sbjct: 86  CGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGNGLI 145

Query: 81  GGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
               + G +D A  VF  M  +  VSW  +I+G  QN   ++A+  +  M+   L P++ 
Sbjct: 146 NMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNF 205

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
            L+S LS+CA LG +  G   +    K  + +D  +   L+ +YA+   +    +VF   
Sbjct: 206 ALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWM 265

Query: 201 GDKDVSAYTSAIFGLAMNGHSI-EAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
            ++D  ++ + I  LA +G S+ EA E+F  M   G SP+ +++I +L+  S L    K 
Sbjct: 266 LERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLS-TSKL 324

Query: 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
            +  H++   + +K +      ++   G++G +E  E   + M  + D V W +++
Sbjct: 325 SHQIHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMI 380



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 121/243 (49%), Gaps = 4/243 (1%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136
           N+++   VR G    A ++F++MP R+ V+W  LISG+ QNG P++A  + +EM      
Sbjct: 39  NTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMPEDACGVLKEMIFEGFL 98

Query: 137 PNSAILVSLLSACAQ-LGALDYGNWVYSYIQKKCIKLDSILCA-ALIDMYAKCGSIDLAM 194
           PN     S + AC + +     G  V+ Y  +  +    +     LI+MYAKCG ID A 
Sbjct: 99  PNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGNGLINMYAKCGDIDHAR 158

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
            VF    DKD  ++ S I GL  N    +A + + +M+  G+ P + + I+ LS+C+ LG
Sbjct: 159 SVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASLG 218

Query: 255 WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTL 314
            +  G    H      G+  ++     ++ L      L E +   + M ++ D V W T+
Sbjct: 219 CILLG-QQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWM-LERDQVSWNTV 276

Query: 315 LGA 317
           +GA
Sbjct: 277 IGA 279



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 90/198 (45%), Gaps = 40/198 (20%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDE-SDDLDVVSWNSMINGYVRNGEIL 59
           +++K +   D  ++N+L+  Y   G + +   +F   S+  D VSWNSMI+GY+ N  + 
Sbjct: 331 LILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHNELLC 390

Query: 60  EGLKLFDKMPQR--------------------------------------NDVSWNSILG 81
           + + L   M QR                                      +DV   S L 
Sbjct: 391 KAMDLVWLMMQRGQRLDCFTFATVLSACATVATLECGMEVHACAIRACLESDVVIGSALV 450

Query: 82  GLV-RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
            +  + G +D A R FN MP R+L SW  +ISG+A++G    AL LF  M+     P+  
Sbjct: 451 DMYSKCGRIDYASRFFNLMPVRNLYSWNSMISGYARHGHGDNALRLFTRMKLSGQLPDHI 510

Query: 141 ILVSLLSACAQLGALDYG 158
             V +LSAC+ +G +D G
Sbjct: 511 TFVGVLSACSHIGLVDEG 528


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/548 (35%), Positives = 312/548 (56%), Gaps = 39/548 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           ++N    ++ + N+L+  Y+ C  V+     F+   + D++SW ++I GY +N   LE +
Sbjct: 376 IRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAI 435

Query: 63  KLFDK----------------------MPQRNDVS----------------WNSILGGLV 84
            LF K                      +  RN +                  N+I+    
Sbjct: 436 NLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLADIMLQNAIVNVYG 495

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
             G +D A R F  +  + +VSW  +I+    NG P EAL LF  ++  +++P+S  ++S
Sbjct: 496 EVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIIS 555

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
            LSA A L +L  G  ++ ++ +K   L+  + ++L+DMYA CG+++ + ++FHS   +D
Sbjct: 556 ALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRD 615

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           +  +TS I    M+G   +A  LF+ M  + + PD I+++A+L ACSH G + +G  +F 
Sbjct: 616 LILWTSMINANGMHGCGNKAIALFKKMTDQNVIPDHITFLALLYACSHSGLMVEGKRFFE 675

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
            M   + ++P  +HYACMVDLL R+  LEEA +F+ +MP+KP + IW  LLGAC +H N 
Sbjct: 676 IMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYHFVRNMPIKPSSEIWCALLGACHIHSNK 735

Query: 325 EMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIEL 384
           E+G+     L++SD  + G+Y L+SNI+    +  + EEVR  M+   +K+ PGCS IE+
Sbjct: 736 ELGELAAKELLQSDTENSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEV 795

Query: 385 DGVVHEFLAGDRSHEKTQEIYQFWEEIVKKI-KNYGYNVETRSVMFDIEEEEKETVIGYH 443
           D  +H F+A D+SH +T +IY    +  K + K  GY  +T+ V  ++ EEEK  ++  H
Sbjct: 796 DNKIHTFMARDKSHPQTDDIYLKLAQFTKLLEKKGGYIAQTKFVFHNVSEEEKTQMLYGH 855

Query: 444 SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
           SE+LAL +GL+ T  G+ IRI KN+RIC DCH+  K+ S+V +R + +RD   +HHFE G
Sbjct: 856 SERLALGYGLLVTPKGTCIRITKNLRICDDCHTFFKIASEVSQRPLVVRDANRFHHFERG 915

Query: 504 SCSCLEYW 511
            CSC ++W
Sbjct: 916 LCSCGDFW 923



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 102/359 (28%), Positives = 175/359 (48%), Gaps = 42/359 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K++   DV+V N+LI  Y+ CGR+ DA  VF+     D VSWN++++G V+N    + 
Sbjct: 274 VLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDA 333

Query: 62  LKLFDKMPQ----------------------------------RNDVSWNSILGGLVRFG 87
           L  F  M                                    RN +  N  +G  +   
Sbjct: 334 LNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDM 393

Query: 88  SVDDAC-----RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
                C       F  M ++ L+SW  +I+G+AQN    EA+ LFR++Q   ++ +  ++
Sbjct: 394 YAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMI 453

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S+L AC+ L + ++   ++ Y+ K+ +  D +L  A++++Y + G ID A + F S   
Sbjct: 454 GSVLRACSGLKSRNFIREIHGYVFKRDLA-DIMLQNAIVNVYGEVGHIDYARRAFESIRS 512

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           KD+ ++TS I     NG  +EA ELF ++K   I PDSI+ I+ LSA ++L  ++KG   
Sbjct: 513 KDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKG-KE 571

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            H      G   E    + +VD+    G +E +     S+  + D ++W +++ A  +H
Sbjct: 572 IHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQR-DLILWTSMINANGMH 629



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 105/364 (28%), Positives = 166/364 (45%), Gaps = 54/364 (14%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDE--SDDLDVVSWNSMINGYVRNGEI 58
           + VK  +   VFV N+LI  Y  CG +  AR +FD    +  D VSWNS+I+ +V  G  
Sbjct: 170 VAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNC 229

Query: 59  LEGLKLFDKMPQRNDVS---------------------------------------WNSI 79
           LE L LF +M +    S                                        N++
Sbjct: 230 LEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVANAL 289

Query: 80  LGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS 139
           +    + G ++DA RVF  M  R  VSW  L+SG  QN    +AL  FR+MQ+   +P+ 
Sbjct: 290 IAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQ 349

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
             +++L++A  + G L  G  V++Y  +  +  +  +   L+DMYAKC  +      F  
Sbjct: 350 VSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFEC 409

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
             +KD+ ++T+ I G A N   +EA  LF  ++ KG+  D +   +VL ACS  G   + 
Sbjct: 410 MHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACS--GLKSRN 467

Query: 260 FYYFHSMFDVHGIKPELDHYACM-----VDLLGRAGLLEEAENFIASMPMKPDNVIWGTL 314
           F     + ++HG   + D    M     V++ G  G ++ A     S+  K D V W ++
Sbjct: 468 F-----IREIHGYVFKRDLADIMLQNAIVNVYGEVGHIDYARRAFESIRSK-DIVSWTSM 521

Query: 315 LGAC 318
           +  C
Sbjct: 522 ITCC 525



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 129/289 (44%), Gaps = 41/289 (14%)

Query: 12  FVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM--- 68
           F+   L+  Y  CG +RDA  VFDE  +  + SWN+++  +V +G+ LE ++L+  M   
Sbjct: 80  FLATKLVLMYGKCGSLRDAVKVFDEMSERTIFSWNALMGAFVSSGKYLEAIELYKDMRVL 139

Query: 69  -------------------------PQRNDVS-----------WNSILGGLVRFGSVDDA 92
                                     + + V+            N+++    + G +  A
Sbjct: 140 GVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGA 199

Query: 93  CRVFN--QMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
             +F+   M K   VSW  +IS     G   EAL+LFR MQ + +  N+   V+ L    
Sbjct: 200 RVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVE 259

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
               +  G  ++  + K     D  +  ALI MYAKCG ++ A +VF S   +D  ++ +
Sbjct: 260 DPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNT 319

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
            + GL  N    +A   F +M++ G  PD +S + +++A    G + KG
Sbjct: 320 LLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKG 368



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 116/237 (48%), Gaps = 16/237 (6%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           GS+ DA +VF++M +R++ SW  L+  F  +G+  EA+ L+++M+ L +  ++    S+L
Sbjct: 93  GSLRDAVKVFDEMSERTIFSWNALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVL 152

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS--YGDKD 204
            AC  LG    G  ++    K        +C ALI MY KCG +  A  +F       +D
Sbjct: 153 KACGALGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKED 212

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
             ++ S I      G+ +EA  LF  M+  G++ ++ +++A L       +V+ G     
Sbjct: 213 TVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLG----- 267

Query: 265 SMFDVHGIKPELDHYA------CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
               +HG   + +H+A       ++ +  + G +E+A     SM  + D V W TLL
Sbjct: 268 --MGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCR-DYVSWNTLL 321



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 89/180 (49%), Gaps = 16/180 (8%)

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           LL  C    AL  G  +++ + K    L + L   L+ MY KCGS+  A++VF    ++ 
Sbjct: 52  LLDLCVAAKALPQGQQLHALLLKS--HLSAFLATKLVLMYGKCGSLRDAVKVFDEMSERT 109

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           + ++ + +     +G  +EA EL+++M+  G++ D+ ++ +VL AC  LG    G     
Sbjct: 110 IFSWNALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLG----- 164

Query: 265 SMFDVHGIKPELDH----YAC--MVDLLGRAGLLEEAENFIASMPM-KPDNVIWGTLLGA 317
              ++HG+  +  +    + C  ++ + G+ G L  A      + M K D V W +++ A
Sbjct: 165 --AEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISA 222



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 12/157 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++  F  +  + +SL+  Y+ CG V ++R +F      D++ W SMIN    +G   + 
Sbjct: 576 LIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNKA 635

Query: 62  LKLFDKMPQRN----DVSWNSILGGLVRFGSVDDACRVFNQMP-KRSLVSW----VVLIS 112
           + LF KM  +N     +++ ++L      G + +  R F  M     L  W      ++ 
Sbjct: 636 IALFKKMTDQNVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVD 695

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
             +++   +EA    R M    ++P+S I  +LL AC
Sbjct: 696 LLSRSNSLEEAYHFVRNMP---IKPSSEIWCALLGAC 729


>gi|449449673|ref|XP_004142589.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g50990-like [Cucumis sativus]
          Length = 628

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 189/468 (40%), Positives = 290/468 (61%), Gaps = 7/468 (1%)

Query: 47  SMINGYVRNGEILEGLKLFDKM--PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSL 104
           S+++ Y R G +    +L D +   Q + V+ N ++G  ++ G    A +VF +MP R +
Sbjct: 165 SLVSTYQRVGCLNRVHQLLDILCSKQLDLVAMNLLIGNFMKIGECKFAKKVFYKMPFRDV 224

Query: 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSY 164
           V+W  +I G  +N R  EA   FR+M + +++P+     S+L+ACAQLGA    +WV++ 
Sbjct: 225 VTWNSIIGGCVKNARYDEAFRFFRQMLTSNIQPDGFTFASILNACAQLGAPSNTHWVHAQ 284

Query: 165 IQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEA 224
           + +K I+L+S+L  ALID Y+KCGSI +A ++F +    D S +   I GLA++G +++A
Sbjct: 285 MTQKKIELNSLLTCALIDAYSKCGSIQIAKEIFSNIPHSDTSVWNVMIKGLAIHGLAMDA 344

Query: 225 FELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVD 284
             LF  M+ + + PD+I+++ VL+AC+H   ++ G  YF  M   + I+P+L+HY  MVD
Sbjct: 345 LSLFLRMEHESVLPDAITFLGVLTACNHGCLIDHGRRYFELMKSHYSIQPQLEHYGVMVD 404

Query: 285 LLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQ-RIGNMLIESDQNHDG 343
           L  RAG LEEA + I +MP++PD V W TLL  CR+++N ++ +  I NM     Q   G
Sbjct: 405 LYSRAGFLEEAYSLIVTMPIEPDVVTWRTLLSGCRIYKNHKLAEVAIANM----SQRKSG 460

Query: 344 RYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQE 403
            Y+LLSNIY    + + AE VRK M+  ++++  G S IEL G +  F +GDR H ++  
Sbjct: 461 DYVLLSNIYCSLNRWKEAETVRKMMKINRVRKKRGKSWIELGGTIQHFKSGDRLHPESDA 520

Query: 404 IYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIR 463
           I +    ++K+ +  GY   T  V  DI EEEKE  + +HSEK+ALA+ ++ T PG+ I 
Sbjct: 521 IEKVLCSLMKRTRTEGYMPVTELVFMDISEEEKEENLSFHSEKMALAYAILKTSPGAKIS 580

Query: 464 IVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           I KN+RIC DCH+ +KLVS+V  R I +RDR  +H FE G CSC + W
Sbjct: 581 ISKNLRICDDCHTWIKLVSRVLCRVIVVRDRIRFHQFEGGMCSCGDRW 628



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 103/246 (41%), Gaps = 41/246 (16%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D+   N LI  +   G  + A+ VF +    DVV+WNS+I G V+N    E  + F +M 
Sbjct: 192 DLVAMNLLIGNFMKIGECKFAKKVFYKMPFRDVVTWNSIIGGCVKNARYDEAFRFFRQML 251

Query: 70  QRN----------------------DVSW------------NSILG-----GLVRFGSVD 90
             N                      +  W            NS+L         + GS+ 
Sbjct: 252 TSNIQPDGFTFASILNACAQLGAPSNTHWVHAQMTQKKIELNSLLTCALIDAYSKCGSIQ 311

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
            A  +F+ +P      W V+I G A +G   +AL+LF  M+   + P++   + +L+AC 
Sbjct: 312 IAKEIFSNIPHSDTSVWNVMIKGLAIHGLAMDALSLFLRMEHESVLPDAITFLGVLTACN 371

Query: 151 QLGALDYGNWVYSYIQKK-CIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG-DKDVSAY 208
               +D+G   +  ++    I+        ++D+Y++ G ++ A  +  +   + DV  +
Sbjct: 372 HGCLIDHGRRYFELMKSHYSIQPQLEHYGVMVDLYSRAGFLEEAYSLIVTMPIEPDVVTW 431

Query: 209 TSAIFG 214
            + + G
Sbjct: 432 RTLLSG 437


>gi|77553706|gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Japonica Group]
 gi|125535837|gb|EAY82325.1| hypothetical protein OsI_37535 [Oryza sativa Indica Group]
 gi|125578563|gb|EAZ19709.1| hypothetical protein OsJ_35285 [Oryza sativa Japonica Group]
          Length = 630

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/541 (35%), Positives = 295/541 (54%), Gaps = 39/541 (7%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM- 68
           D    N LI  Y+ CG+   AR VFD      ++SWN+MI GY  N E +E LKLF +M 
Sbjct: 90  DTVTCNILINLYTKCGQNDCARRVFDAMSVRSIISWNTMIAGYTHNREDVEALKLFSRMH 149

Query: 69  ---PQRNDVSWNSILGGLV-----------------------------------RFGSVD 90
               Q  + + +S L                                       +   + 
Sbjct: 150 REGTQMTEFTLSSTLCACAAKYAIIECKQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIK 209

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           DAC VF  MP+++ V+W  L +GF QNG  +E L LF+  Q   ++     + S+LS CA
Sbjct: 210 DACWVFENMPEKTSVTWSSLFAGFVQNGLHEEVLCLFQSTQREGMQLTEFTVSSILSTCA 269

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
            L  +  G  V++ I K     +  +  +L+D+YAKCG I+ + +VF    +K+V  + +
Sbjct: 270 SLALIIEGTQVHAVIVKHGFHRNLFVATSLVDVYAKCGQIEKSYEVFADMEEKNVVLWNA 329

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I   + + HS EA  LFE M+  GI P+ ++Y+++LSACSH G VE+G +YF+ +    
Sbjct: 330 MIASFSRHAHSWEAMILFEKMQQVGIFPNEVTYLSILSACSHTGLVEEGRHYFNLLLSDR 389

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
             +P + HY+CMVD+LGR+G  +EA   +  MP +P   +WG+LLG+ R+H+N  + +  
Sbjct: 390 TAEPNVLHYSCMVDVLGRSGKTDEAWKLLDKMPFEPTASMWGSLLGSSRIHKNIRLARIA 449

Query: 331 GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHE 390
              L   +  + G ++LLSN+Y  +   EN    RK +R    K+  G S IE  G +H 
Sbjct: 450 AEQLFRLEPENGGNHVLLSNVYAASGNWENVVVARKYLRDSGAKKEMGRSWIEAKGKIHV 509

Query: 391 FLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALA 450
           F+AG+R H    ++Y   EEI  +++   +   T+  + D+  ++KE ++ +HSEKLA A
Sbjct: 510 FVAGEREHPGITDVYNKLEEIYHEMRKISHRANTQCDLHDVHADQKEELLKHHSEKLAFA 569

Query: 451 FGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEY 510
           FGLI   P   I I KN+RIC DCHS MK+VS + +R++ +RD   +HHF+DGSCSC ++
Sbjct: 570 FGLISLPPNIPITIYKNLRICGDCHSFMKIVSCITERQVIVRDINRFHHFKDGSCSCGDF 629

Query: 511 W 511
           W
Sbjct: 630 W 630



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 138/302 (45%), Gaps = 8/302 (2%)

Query: 28  RDARWVFDESDDLDVVSWNSMINGYVRNGEIL-----EGLKLFDKMPQRNDVSWNSILGG 82
           +D   V  E D +DV + + ++    +   +L      GL +   +   + V+ N ++  
Sbjct: 42  KDKNLVRVERDLIDVFTLHELLQLCAKRRSLLVGKSCHGLAIHFGLVT-DTVTCNILINL 100

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G  D A RVF+ M  RS++SW  +I+G+  N    EAL LF  M     +     L
Sbjct: 101 YTKCGQNDCARRVFDAMSVRSIISWNTMIAGYTHNREDVEALKLFSRMHREGTQMTEFTL 160

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S L ACA   A+     +++   K  +   S +  A +D+YAKC  I  A  VF +  +
Sbjct: 161 SSTLCACAAKYAIIECKQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFENMPE 220

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           K    ++S   G   NG   E   LF++ + +G+     +  ++LS C+ L  + +G   
Sbjct: 221 KTSVTWSSLFAGFVQNGLHEEVLCLFQSTQREGMQLTEFTVSSILSTCASLALIIEG-TQ 279

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
            H++   HG    L     +VD+  + G +E++    A M  K + V+W  ++ +   H 
Sbjct: 280 VHAVIVKHGFHRNLFVATSLVDVYAKCGQIEKSYEVFADMEEK-NVVLWNAMIASFSRHA 338

Query: 323 NA 324
           ++
Sbjct: 339 HS 340



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/254 (21%), Positives = 113/254 (44%), Gaps = 44/254 (17%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + +K +     FV  + +  Y+ C  ++DA WVF+   +   V+W+S+  G+V+NG   E
Sbjct: 182 IAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFENMPEKTSVTWSSLFAGFVQNGLHEE 241

Query: 61  GLKLFDKMPQ---------------------------------------RNDVSWNSILG 81
            L LF    +                                       RN     S++ 
Sbjct: 242 VLCLFQSTQREGMQLTEFTVSSILSTCASLALIIEGTQVHAVIVKHGFHRNLFVATSLVD 301

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G ++ +  VF  M ++++V W  +I+ F+++    EA+ LF +MQ + + PN   
Sbjct: 302 VYAKCGQIEKSYEVFADMEEKNVVLWNAMIASFSRHAHSWEAMILFEKMQQVGIFPNEVT 361

Query: 142 LVSLLSACAQLGALDYGNWVYS-YIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
            +S+LSAC+  G ++ G   ++  +  +  + + +  + ++D+  + G  D A ++    
Sbjct: 362 YLSILSACSHTGLVEEGRHYFNLLLSDRTAEPNVLHYSCMVDVLGRSGKTDEAWKLL--- 418

Query: 201 GDKDVSAYTSAIFG 214
            DK     T++++G
Sbjct: 419 -DKMPFEPTASMWG 431



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 84/157 (53%), Gaps = 12/157 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++VK+ F  ++FV  SL+  Y+ CG++  +  VF + ++ +VV WN+MI  + R+    E
Sbjct: 283 VIVKHGFHRNLFVATSLVDVYAKCGQIEKSYEVFADMEEKNVVLWNAMIASFSRHAHSWE 342

Query: 61  GLKLFDKMPQ----RNDVSWNSILGGLVRFGSVDDACRVFN-----QMPKRSLVSWVVLI 111
            + LF+KM Q     N+V++ SIL      G V++    FN     +  + +++ +  ++
Sbjct: 343 AMILFEKMQQVGIFPNEVTYLSILSACSHTGLVEEGRHYFNLLLSDRTAEPNVLHYSCMV 402

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148
               ++G+  EA  L  +M     EP +++  SLL +
Sbjct: 403 DVLGRSGKTDEAWKLLDKM---PFEPTASMWGSLLGS 436


>gi|357133649|ref|XP_003568436.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Brachypodium distachyon]
          Length = 610

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/517 (37%), Positives = 302/517 (58%), Gaps = 7/517 (1%)

Query: 1   MVVKNSFAYDVFVKNSLI----QFYSVC-GRVRDARWVFDESDDLDVVSWNSMINGYVRN 55
           M+  ++   D FV  S+     +  S+C G+     +V       DVV  +S+I+ Y + 
Sbjct: 95  MLSADALRPDHFVLASIASATARLRSLCLGKQLHGHFVASPYSSDDVVK-SSLIDMYCKC 153

Query: 56  GEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFA 115
           G   +  K+FD +  +N V W +++ G V  G  D+A  +F  MP R+L +W  LISGF 
Sbjct: 154 GVPDDARKVFDSIVAKNSVMWTALISGYVLNGRSDEALELFRSMPGRTLFAWTALISGFV 213

Query: 116 QNGRPKEALALFREMQSLDLEPNSA-ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDS 174
           ++G    A+ LF +M+   +  + A +L S +   A L A   G  ++S   +       
Sbjct: 214 RSGESVSAVKLFVDMRRDGVSIDDAFVLSSAIGGAADLAAHVLGRQLHSLTMRLGFSSSM 273

Query: 175 ILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK 234
           I+  A++DMY+KC  I  A +VF     +D+ ++T+ + G A +G + EAF L++ M   
Sbjct: 274 IVGNAVVDMYSKCSDIHSAREVFEEITGRDIISWTTMLVGEAQHGRAEEAFSLYDRMVLA 333

Query: 235 GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEE 294
           G+ P+ ++++ ++ ACSH G V+KG   F SM   +GI P L HY C +DLL R+G L E
Sbjct: 334 GVKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKGEYGINPRLQHYTCYLDLLSRSGHLAE 393

Query: 295 AENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVE 354
           AE  I +MP  PD   W +LL AC+ + NAEM  R+ + L+E    +   Y+LLSN+Y  
Sbjct: 394 AEELITTMPYVPDEATWASLLSACKKYNNAEMSIRVADNLLELRPKYPSTYVLLSNVYAV 453

Query: 355 TLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKK 414
             K ++ + VRK M   +I++ PG S IE+      F AG+   +  +EI  F EE+V +
Sbjct: 454 NGKWDSVDTVRKLMADMEIRKEPGYSWIEVGREFRLFHAGEVPIDLREEILGFLEELVSE 513

Query: 415 IKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDC 474
           ++  GY  +T SVM D+EE EKE  +  HSE+LA+AFG++ +  GSVIR+VKN+R+C+DC
Sbjct: 514 MRQRGYVPDTSSVMHDLEEHEKEHHLCLHSERLAVAFGILRSPLGSVIRVVKNLRVCNDC 573

Query: 475 HSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           H+ MK +S++F+RKI +RD   +HHFE G CSC E+W
Sbjct: 574 HTVMKFISEIFQRKIIVRDASRFHHFEGGKCSCSEFW 610



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 81/149 (54%), Gaps = 1/149 (0%)

Query: 89  VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD-LEPNSAILVSLLS 147
           + D   +F++ P+R L  +  L++  + +  P+  L L R M S D L P+  +L S+ S
Sbjct: 54  LPDTRLLFDETPRRDLHLYSSLLAAVSHSESPELVLPLLRRMLSADALRPDHFVLASIAS 113

Query: 148 ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSA 207
           A A+L +L  G  ++ +        D ++ ++LIDMY KCG  D A +VF S   K+   
Sbjct: 114 ATARLRSLCLGKQLHGHFVASPYSSDDVVKSSLIDMYCKCGVPDDARKVFDSIVAKNSVM 173

Query: 208 YTSAIFGLAMNGHSIEAFELFENMKSKGI 236
           +T+ I G  +NG S EA ELF +M  + +
Sbjct: 174 WTALISGYVLNGRSDEALELFRSMPGRTL 202


>gi|356565103|ref|XP_003550784.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g47530-like [Glycine max]
          Length = 515

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 187/424 (44%), Positives = 263/424 (62%), Gaps = 3/424 (0%)

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQ--SLDLEPNSAILVSLLSA 148
           DAC+VF++MP R  V+W V+IS   +N R ++AL+LF  +Q  S   EP+    + LL A
Sbjct: 92  DACKVFDEMPPRDTVAWNVMISCCIRNNRTRDALSLFDVLQNSSYKCEPDDVTCLLLLQA 151

Query: 149 CAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAY 208
           CA L AL++G  ++ Y+ +        L  ALI MY++CG +D A +VF   G+K+V ++
Sbjct: 152 CAHLYALEFGERIHGYMMEHGYGGALNLSNALISMYSRCGCLDKAXEVFKGTGNKNVVSW 211

Query: 209 TSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY-YFHSMF 267
           ++ I GLAMNG+  EA E FE M   GI PD  +   VLSACS+ G V++G   +F  M 
Sbjct: 212 SAMISGLAMNGYGREAIESFEEMLRIGIRPDDQTLTGVLSACSYSGMVDEGMMSFFDRMS 271

Query: 268 DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMG 327
              G+ P + HY CMVDLLG AGLL++A   I SM  KPD+  W TLLGACR+H +  +G
Sbjct: 272 REFGVTPNVHHYGCMVDLLGHAGLLDKAXQLIMSMVEKPDSTTWRTLLGACRIHGHVTLG 331

Query: 328 QRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGV 387
           +R+   LIE      G ++LL NIY      E   EVRK M+ + I+  PGCS IEL GV
Sbjct: 332 ERVIGHLIELKAQEAGDHVLLLNIYSSAGHWEKVAEVRKLMKNKSIQTTPGCSTIELKGV 391

Query: 388 VHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKL 447
           VHEF+  D SH +  EIY+  +EI  +++  GY VE  S +  ++++EK  V+ +HSEKL
Sbjct: 392 VHEFVVDDVSHTRNHEIYETLDEINHQLRIAGYVVELSSELHKMDDKEKGYVLSHHSEKL 451

Query: 448 ALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSC 507
           A+AFG++ T PG+ +R+  N+RIC DC + +K  S V+   + +RD   +HHF  G CSC
Sbjct: 452 AIAFGVLATPPGTTLRVANNLRICVDCFNFLKHFSGVYNGDVILRDHNRFHHFRGGCCSC 511

Query: 508 LEYW 511
             YW
Sbjct: 512 SNYW 515



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 114/265 (43%), Gaps = 48/265 (18%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           + K    +D  +  +++  YS C R  DA  VFDE    D V+WN MI+  +RN    + 
Sbjct: 65  IFKYGHQWDTLLLTAVMDLYSXCQRGGDACKVFDEMPPRDTVAWNVMISCCIRNNRTRDA 124

Query: 62  LKLFDKMP------QRNDVSW-----------------------------------NSIL 80
           L LFD +       + +DV+                                    N+++
Sbjct: 125 LSLFDVLQNSSYKCEPDDVTCLLLLQACAHLYALEFGERIHGYMMEHGYGGALNLSNALI 184

Query: 81  GGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
               R G +D A  VF     +++VSW  +ISG A NG  +EA+  F EM  + + P+  
Sbjct: 185 SMYSRCGCLDKAXEVFKGTGNKNVVSWSAMISGLAMNGYGREAIESFEEMLRIGIRPDDQ 244

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKC----IKLDSILCAALIDMYAKCGSIDLAMQV 196
            L  +LSAC+  G +D G  + S+  +      +  +      ++D+    G +D A Q+
Sbjct: 245 TLTGVLSACSYSGMVDEG--MMSFFDRMSREFGVTPNVHHYGCMVDLLGHAGLLDKAXQL 302

Query: 197 FHSYGDK-DVSAYTSAIFGLAMNGH 220
             S  +K D + + + +    ++GH
Sbjct: 303 IMSMVEKPDSTTWRTLLGACRIHGH 327



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 88/191 (46%), Gaps = 5/191 (2%)

Query: 109 VLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGN--WVYSYIQ 166
            +I   + +  P++ L L+R+M+   +  +      ++ +C +L  L       V+  I 
Sbjct: 7   TMIRACSMSDSPQKGLLLYRDMRRRGIAADPLSSSFVVKSCIRLXGLYLLGGVQVHCNIF 66

Query: 167 KKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFE 226
           K   + D++L  A++D+Y+ C     A +VF     +D  A+   I     N  + +A  
Sbjct: 67  KYGHQWDTLLLTAVMDLYSXCQRGGDACKVFDEMPPRDTVAWNVMISCCIRNNRTRDALS 126

Query: 227 LFENMK--SKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVD 284
           LF+ ++  S    PD ++ + +L AC+HL  +E G    H     HG    L+    ++ 
Sbjct: 127 LFDVLQNSSYKCEPDDVTCLLLLQACAHLYALEFG-ERIHGYMMEHGYGGALNLSNALIS 185

Query: 285 LLGRAGLLEEA 295
           +  R G L++A
Sbjct: 186 MYSRCGCLDKA 196


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 208/557 (37%), Positives = 310/557 (55%), Gaps = 55/557 (9%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFD----ESDDLDVVSWNSMINGYVRNGEILEGLKLF 65
           DV   N+++  YS  GR  DA  +F+    E  +L+VV+W+++I GY + G   E L +F
Sbjct: 315 DVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVF 374

Query: 66  DKM----PQRNDVSWNSILGGLVRFGSV-----------------------DD------- 91
            +M     + N V+  S+L G    G++                       DD       
Sbjct: 375 RQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINAL 434

Query: 92  ------------ACRVFNQMPK--RSLVSWVVLISGFAQNGRPKEALALFREMQSLD--L 135
                       A  +F+ +P   RS+V+W VLI G AQ+G   EAL LF +M   D  +
Sbjct: 435 IDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFV 494

Query: 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCA-ALIDMYAKCGSIDLAM 194
            PN+  +   L ACA+LGAL +G  +++Y+ +   +   +  A  LIDMY+K G +D A 
Sbjct: 495 MPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAAR 554

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
            VF +   ++  ++TS + G  M+G   EA ++F  M+   + PD ++++ VL ACSH G
Sbjct: 555 VVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSG 614

Query: 255 WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTL 314
            V++G  YF+ M    G+ P  +HYACMVDLL RAG L+EA   I  MPMKP   +W  L
Sbjct: 615 MVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVAL 674

Query: 315 LGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIK 374
           L ACRV+ N E+G+   N L+E +  +DG Y LLSNIY      ++   +R  M+   IK
Sbjct: 675 LSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIK 734

Query: 375 RAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEE 434
           + PGCS ++       F AGD SH  +Q+IY    +++++IK  GY  + R  + D+++E
Sbjct: 735 KRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVPDNRFALHDVDDE 794

Query: 435 EKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDR 494
           EK  ++  HSEKLALA+G++ T PG+ IRI KN+R C DCHSA   +S + + +I +RD 
Sbjct: 795 EKGDLLSEHSEKLALAYGILTTAPGAPIRITKNLRACGDCHSAFTYISIIIEHEIIVRDS 854

Query: 495 KHYHHFEDGSCSCLEYW 511
             +HHF++GSCSC  YW
Sbjct: 855 SRFHHFKNGSCSCRGYW 871



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 112/423 (26%), Positives = 187/423 (44%), Gaps = 98/423 (23%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDL---DVVSWNSMINGYVRNGE 57
           +V  + F ++VFV N L+  Y  CG   +AR VFDE  +    D+VSWNS++  Y++ G+
Sbjct: 170 VVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGD 229

Query: 58  ILEGLKLFDKMPQ----RNDV--------------SW----------------------N 77
            +  +K+F++M +    R D               +W                      N
Sbjct: 230 SIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGN 289

Query: 78  SILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM------- 130
           +++    + G +++A +VF +M  + +VSW  +++G++Q GR  +AL LF ++       
Sbjct: 290 AVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIEL 349

Query: 131 -------------------QSLDL---------EPNSAILVSLLSACAQLGALDYGNWVY 162
                              ++LD+         EPN   LVSLLS CA  G L +G   +
Sbjct: 350 NVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETH 409

Query: 163 SYIQKKCIKLDS-------ILCAALIDMYAKCGSIDLAMQVFHSYGDKD--VSAYTSAIF 213
            +  K  + LD        ++  ALIDMY+KC S   A  +F     KD  V  +T  I 
Sbjct: 410 CHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIG 469

Query: 214 GLAMNGHSIEAFELFENM--KSKGISPDSISYIAVLSACSHLGWVEKG----FYYFHSMF 267
           G A +G + EA ELF  M      + P++ +    L AC+ LG +  G     Y   + F
Sbjct: 470 GNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRF 529

Query: 268 DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMG 327
           +       L    C++D+  ++G ++ A     +M  + + V W +L+    +H   E  
Sbjct: 530 E----SAMLFVANCLIDMYSKSGDVDAARVVFDNMHQR-NGVSWTSLMTGYGMHGRGEEA 584

Query: 328 QRI 330
            +I
Sbjct: 585 LQI 587



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 111/243 (45%), Gaps = 8/243 (3%)

Query: 79  ILGGLVRFGSVDDACRVFNQMPKRS--LVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136
           I+   + F S   A  V  ++   S  +  W  LI      G  ++ L L+R MQ L   
Sbjct: 83  IISMYLTFNSPAKALSVLRRLHPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWR 142

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
           P+      +L AC ++ +   G  V++ +     + +  +   L+ MY +CG+ + A QV
Sbjct: 143 PDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQV 202

Query: 197 F---HSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK-GISPDSISYIAVLSACSH 252
           F      G  D+ ++ S +      G SI A ++FE M    GI PD++S + VL AC+ 
Sbjct: 203 FDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACAS 262

Query: 253 LGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWG 312
           +G   +G    H      G+  ++     +VD+  + G++EEA      M +K D V W 
Sbjct: 263 VGAWSRG-KQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVK-DVVSWN 320

Query: 313 TLL 315
            ++
Sbjct: 321 AMV 323



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 89/183 (48%), Gaps = 17/183 (9%)

Query: 2   VVKNSF-AYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           V++N F +  +FV N LI  YS  G V  AR VFD     + VSW S++ GY  +G   E
Sbjct: 524 VLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEE 583

Query: 61  GLKLFDKMPQ----RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV-----SWVVLI 111
            L++F +M +     + V++  +L      G VD     FN M K   V      +  ++
Sbjct: 584 ALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMV 643

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK 171
              ++ GR  EA+ L R M    ++P  A+ V+LLSAC     ++ G     Y   + ++
Sbjct: 644 DLLSRAGRLDEAMELIRGMP---MKPTPAVWVALLSACRVYANVELGE----YAANQLLE 696

Query: 172 LDS 174
           L+S
Sbjct: 697 LES 699


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 188/548 (34%), Positives = 307/548 (56%), Gaps = 38/548 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++ + +  D    N LI  Y+ CG +  ++ VF      D VSWNSMIN Y++NG   E 
Sbjct: 342 MITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEA 401

Query: 62  LKLFDKMP--------------------------------------QRNDVSWNSILGGL 83
           +KLF  M                                         N V  N+++   
Sbjct: 402 MKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMY 461

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
            + G + D+ +VF  M  R +++W  +I+    +      L +   M++  + P+ A ++
Sbjct: 462 AKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATML 521

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           S+L  C+ L A   G  ++  I K  ++ D  +   LI+MY+KCGS+  + QVF     K
Sbjct: 522 SILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTK 581

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           DV  +T+ I    M G   +A   F  M++ GI PD ++++A++ ACSH G VE+G  YF
Sbjct: 582 DVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYF 641

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
           H M   + I+P ++HYAC+VDLL R+ LL++AE+FI SMP+KPD+ IWG LL ACR+  +
Sbjct: 642 HRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGD 701

Query: 324 AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE 383
            E+ +R+   +IE + +  G Y+L+SNIY    K +    +RK+++ R +K+ PGCS +E
Sbjct: 702 TEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWME 761

Query: 384 LDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYH 443
           +   V+ F  G +  E+ +E+ +    +   +   GY    + V+ DI+E+EK  ++  H
Sbjct: 762 IQNKVYVFGTGTKFFEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGH 821

Query: 444 SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
           SE+LA+AFGL+ TKPG+ ++++KN+R+C DCH+  K +SK+ +R++ +RD   +H F+DG
Sbjct: 822 SERLAIAFGLLNTKPGTPLQVMKNLRVCEDCHTVTKYISKIVQRELLVRDANRFHVFKDG 881

Query: 504 SCSCLEYW 511
           +CSC +YW
Sbjct: 882 ACSCGDYW 889



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 104/368 (28%), Positives = 177/368 (48%), Gaps = 43/368 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+   F  D+++ N+LI  Y     +  AR VF+E    DVVSWNS+I+GY  NG   E 
Sbjct: 141 VLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEA 200

Query: 62  LKLF--------------------------------------DKMPQRNDVSWNS-ILGG 82
           L+++                                      +K+  + DV  N+ +L  
Sbjct: 201 LEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSM 260

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             +F  + D  R+F++M  R  VSW  +I G++Q G  +E++ LF EM +   +P+   +
Sbjct: 261 YCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVN-QFKPDLLTI 319

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S+L AC  LG L++G +V+ Y+     + D+     LI+MYAKCG++  + +VF     
Sbjct: 320 TSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKC 379

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           KD  ++ S I     NG   EA +LF+ MK+  + PDS++Y+ +LS  + LG +  G   
Sbjct: 380 KDSVSWNSMINVYIQNGSFDEAMKLFKMMKTD-VKPDSVTYVMLLSMSTQLGDLHLG-KE 437

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
            H      G    +     +VD+  + G + ++     +M  + D + W T++ +C    
Sbjct: 438 LHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKAR-DIITWNTIIASCVHSE 496

Query: 323 NAEMGQRI 330
           +  +G R+
Sbjct: 497 DCNLGLRM 504



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/367 (24%), Positives = 165/367 (44%), Gaps = 41/367 (11%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++ K     DV V N L+  Y     + D R +FD+    D VSWN+MI GY + G   E
Sbjct: 241 LIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEE 300

Query: 61  GLKLFDKMPQR--------------------------------------NDVSWNSILGG 82
            +KLF +M  +                                      +  + N ++  
Sbjct: 301 SIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINM 360

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G++  +  VF+ M  +  VSW  +I+ + QNG   EA+ LF+ M++ D++P+S   
Sbjct: 361 YAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKT-DVKPDSVTY 419

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           V LLS   QLG L  G  ++  + K     + ++   L+DMYAKCG +  +++VF +   
Sbjct: 420 VMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKA 479

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           +D+  + + I     +        +   M+++G++PD  + +++L  CS L    +G   
Sbjct: 480 RDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEI 539

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
              +F + G++ ++     ++++  + G L  +      M  K D V W  L+ AC ++ 
Sbjct: 540 HGCIFKL-GLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTK-DVVTWTALISACGMYG 597

Query: 323 NAEMGQR 329
             +   R
Sbjct: 598 EGKKAVR 604



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 162/314 (51%), Gaps = 11/314 (3%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDL----DVVSWNSMINGY--VRNGEILEGL- 62
           +V++ NS+I+  +  G   +A  ++ E+  +    D  ++ S+IN    + + E+ + + 
Sbjct: 79  NVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIH 138

Query: 63  -KLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
            ++ D     +    N+++    RF  +D A +VF +MP R +VSW  LISG+  NG   
Sbjct: 139 DRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWN 198

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
           EAL ++   ++L + P+S  + S+L AC  LG+++ G+ ++  I+K  IK D I+   L+
Sbjct: 199 EALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLL 258

Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
            MY K   +    ++F     +D  ++ + I G +  G   E+ +LF  M ++   PD +
Sbjct: 259 SMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLL 317

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
           +  ++L AC HLG +E G  Y H      G + +      ++++  + G L  ++   + 
Sbjct: 318 TITSILQACGHLGDLEFG-KYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSG 376

Query: 302 MPMKPDNVIWGTLL 315
           M  K D+V W +++
Sbjct: 377 MKCK-DSVSWNSMI 389



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 133/304 (43%), Gaps = 35/304 (11%)

Query: 100 PKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGN 159
           P  ++  W  +I     NG   EAL+L+ E Q + L+P++    S+++ACA L   +   
Sbjct: 76  PSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 135

Query: 160 WVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNG 219
            ++  +       D  +  ALIDMY +   +D A +VF     +DV ++ S I G   NG
Sbjct: 136 SIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANG 195

Query: 220 HSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE---- 275
           +  EA E++   ++ G+ PDS +  +VL AC  LG VE+G    H + +  GIK +    
Sbjct: 196 YWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEG-DIIHGLIEKIGIKKDVIVN 254

Query: 276 ---LDHYA------------------------CMVDLLGRAGLLEEAENFIASM--PMKP 306
              L  Y                          M+    + GL EE+      M    KP
Sbjct: 255 NGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQFKP 314

Query: 307 DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYI-LLSNIYVETLKGENAEEVR 365
           D +   ++L AC    + E G+ + + +I S    D     +L N+Y +      ++EV 
Sbjct: 315 DLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVF 374

Query: 366 KTMR 369
             M+
Sbjct: 375 SGMK 378


>gi|356519952|ref|XP_003528632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 693

 Score =  370 bits (950), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 199/518 (38%), Positives = 305/518 (58%), Gaps = 13/518 (2%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +V      + FV+N++   Y+ CG +  AR +FD   D +VVSWN MI+GYV+ G   E 
Sbjct: 181 IVVADLGENTFVRNAMTDMYAKCGDIDKARLLFDGMIDKNVVSWNLMISGYVKMGNPNEC 240

Query: 62  LKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQN 117
           + LF++M     + + V+ +++L    R G VDDA  +F ++PK+  + W  +I G+AQN
Sbjct: 241 IHLFNEMQLSGLKPDLVTVSNVLNAYFRCGRVDDARNLFIKLPKKDEICWTTMIVGYAQN 300

Query: 118 GRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILC 177
           GR ++A  LF +M   +++P+S  + S++S+CA+L +L +G  V+  +    I    ++ 
Sbjct: 301 GREEDAWMLFGDMLRRNVKPDSYTISSMVSSCAKLASLYHGQVVHGKVVVMGIDNSMLVS 360

Query: 178 AALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGIS 237
           +AL+DMY KCG    A  +F +   ++V  + + I G A NG  +EA  L+E M+ +   
Sbjct: 361 SALVDMYCKCGVTLDARVIFETMPIRNVITWNAMILGYAQNGQVLEALTLYERMQQENFK 420

Query: 238 PDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAEN 297
           PD+I+++ VLSAC +   V++G  YF S+ + HGI P LDHYACM+ LLGR+G +++A +
Sbjct: 421 PDNITFVGVLSACINADMVKEGQKYFDSISE-HGIAPTLDHYACMITLLGRSGSVDKAVD 479

Query: 298 FIASMPMKPDNVIWGTLLGACRVH--RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVET 355
            I  MP +P+  IW TLL  C     +NAE+     + L E D  + G YI+LSN+Y   
Sbjct: 480 LIQGMPHEPNYRIWSTLLSVCAKGDLKNAELA---ASHLFELDPRNAGPYIMLSNLYAAC 536

Query: 356 LKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKI 415
            + ++   VR  M+++  K+    S +E+   VH F++ D  H +  +IY     ++  +
Sbjct: 537 GRWKDVAVVRSLMKEKNAKKFAAYSWVEVGNKVHRFVSEDHYHPEVGKIYGELNRLISIL 596

Query: 416 KNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSV--IRIVKNIRICSD 473
           +  GYN +T  V+ ++ EEEK   I YHSEKLALAF LI  KP  V  IRI+KNIR+C D
Sbjct: 597 QQIGYNPDTNIVLHNVGEEEKFRSISYHSEKLALAFALI-RKPNGVAPIRIIKNIRVCDD 655

Query: 474 CHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           CH  MK  S    R I +RD   +HHF  G CSC + W
Sbjct: 656 CHVFMKFASITISRPIIMRDSNRFHHFFGGKCSCNDNW 693



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 137/278 (49%), Gaps = 12/278 (4%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N +++ Y + G++ +   +FD M +R+  SWN++L    + G V++   VF+QMP R  V
Sbjct: 62  NQLLHLYAKFGKLSDAQNVFDNMTKRDVYSWNTLLSAYAKMGMVENLHVVFDQMPYRDSV 121

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           S+  LI+ FA NG   +AL +   MQ    +P     V+ L AC+QL  L +G  ++  I
Sbjct: 122 SYNTLIACFASNGHSGKALKVLVRMQEDGFQPTQYSHVNALQACSQLLDLRHGKQIHGRI 181

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
               +  ++ +  A+ DMYAKCG ID A  +F    DK+V ++   I G    G+  E  
Sbjct: 182 VVADLGENTFVRNAMTDMYAKCGDIDKARLLFDGMIDKNVVSWNLMISGYVKMGNPNECI 241

Query: 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL 285
            LF  M+  G+ PD ++   VL+A    G V+     F  +       P+ D       +
Sbjct: 242 HLFNEMQLSGLKPDLVTVSNVLNAYFRCGRVDDARNLFIKL-------PKKDEICWTTMI 294

Query: 286 LGRA--GLLEEAENFIASM---PMKPDNVIWGTLLGAC 318
           +G A  G  E+A      M    +KPD+    +++ +C
Sbjct: 295 VGYAQNGREEDAWMLFGDMLRRNVKPDSYTISSMVSSC 332



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 149/354 (42%), Gaps = 78/354 (22%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V  N    DV+  N+L+  Y+  G V +   VFD+    D VS+N++I  +  NG   + 
Sbjct: 80  VFDNMTKRDVYSWNTLLSAYAKMGMVENLHVVFDQMPYRDSVSYNTLIACFASNGHSGKA 139

Query: 62  LKLFDKMPQ---------------------------------------RNDVSWNSILGG 82
           LK+  +M +                                        N    N++   
Sbjct: 140 LKVLVRMQEDGFQPTQYSHVNALQACSQLLDLRHGKQIHGRIVVADLGENTFVRNAMTDM 199

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G +D A  +F+ M  +++VSW ++ISG+ + G P E + LF EMQ   L+P+   +
Sbjct: 200 YAKCGDIDKARLLFDGMIDKNVVSWNLMISGYVKMGNPNECIHLFNEMQLSGLKPDLVTV 259

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            ++L+A                                   Y +CG +D A  +F     
Sbjct: 260 SNVLNA-----------------------------------YFRCGRVDDARNLFIKLPK 284

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           KD   +T+ I G A NG   +A+ LF +M  + + PDS +  +++S+C+ L  +  G   
Sbjct: 285 KDEICWTTMIVGYAQNGREEDAWMLFGDMLRRNVKPDSYTISSMVSSCAKLASLYHG-QV 343

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVI-WGTLL 315
            H    V GI   +   + +VD+  + G+  +A     +MP++  NVI W  ++
Sbjct: 344 VHGKVVVMGIDNSMLVSSALVDMYCKCGVTLDARVIFETMPIR--NVITWNAMI 395


>gi|302782375|ref|XP_002972961.1| hypothetical protein SELMODRAFT_98426 [Selaginella moellendorffii]
 gi|300159562|gb|EFJ26182.1| hypothetical protein SELMODRAFT_98426 [Selaginella moellendorffii]
          Length = 601

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 191/545 (35%), Positives = 302/545 (55%), Gaps = 35/545 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
            +   F  D+ V+NSLI  Y+ CG  + A  VFD+ +  +++S+ SMI  Y    + +E 
Sbjct: 57  AIAQGFGTDLVVQNSLIHMYAKCGSFKFAAGVFDKMEPKNLISYTSMIQAYTHTAKHVEA 116

Query: 62  LKLFDKM-----------------------------------PQRNDVSWNSILGGLVRF 86
            +L+ KM                                    +R  V  N+++G   RF
Sbjct: 117 YELYKKMLSEGIMPDIYAYAAALAVCPTIREGEAIHVKLGNHERRTPVCSNALVGMYGRF 176

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           G +  A  VF+ +  + L S+  +I+ FA+     +A++L+ EM+  +LEPN     S+L
Sbjct: 177 GRIASAKWVFDGIRYKDLASYNNMIAVFAKYDDGSKAISLYIEMEGRNLEPNLWTYTSVL 236

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
            AC++LGAL  G  ++  ++      D     AL++MYAKCGS   A  VF+  G K+V 
Sbjct: 237 DACSKLGALTEGKEIHKKVKGGDQPTDVAYNTALVNMYAKCGSAHEARAVFNDCGLKNVF 296

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
            +TS +   +  G S    E ++ M  +G+ PD +++ A+ +ACSH G  ++G  YF +M
Sbjct: 297 TWTSLMSAYSQPGQSQYRLEAYQRMNCEGVIPDDVTFTAIFNACSHSGLPDEGLLYFRAM 356

Query: 267 FDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEM 326
            + H I P   HY CM+DLLGR G L EAE  + +MP  PD V W  LL AC+V+ + ++
Sbjct: 357 REDHWIVPLQPHYTCMIDLLGRVGRLREAEELVRTMPYSPDVVTWTILLSACKVYGDLKI 416

Query: 327 GQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDG 386
           G R    + E +    G Y+L+ N+Y +  K  +  EV+K +++R + + PG S+IE   
Sbjct: 417 GARAYKRITELNPPDSGPYLLMGNMYAKAGKWADVAEVKKMIKQRGLAKPPGKSMIEAQR 476

Query: 387 VVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEK 446
            +HEF+ GD +H   QEI    +E+ +++ + GY  +T+ V+ D+ EE K  ++ +HSE+
Sbjct: 477 RIHEFVCGDTAHPLNQEIRARLQEVHEQLSHAGYEPDTKEVLVDVNEEVKPELLLFHSER 536

Query: 447 LALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCS 506
           +AL  GL+ +  G+ + IVKN+RIC DCHS  KLVSK+  RK+ +RD   +H F+ GSCS
Sbjct: 537 MALGLGLLTSDAGATLHIVKNLRICPDCHSFFKLVSKMLHRKVLVRDSHRFHIFQRGSCS 596

Query: 507 CLEYW 511
           C +YW
Sbjct: 597 CGDYW 601



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 79/143 (55%), Gaps = 2/143 (1%)

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA--LDYGNWVYSYIQKK 168
           +  + +N   K+AL LF++  + +L+ N A  V++L +CA LG   L+ G  ++ +   +
Sbjct: 1   MGAYQENDLHKKALQLFKKSINEELQQNQATYVTVLKSCAHLGDDYLEDGKEIHRHAIAQ 60

Query: 169 CIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELF 228
               D ++  +LI MYAKCGS   A  VF     K++ +YTS I         +EA+EL+
Sbjct: 61  GFGTDLVVQNSLIHMYAKCGSFKFAAGVFDKMEPKNLISYTSMIQAYTHTAKHVEAYELY 120

Query: 229 ENMKSKGISPDSISYIAVLSACS 251
           + M S+GI PD  +Y A L+ C 
Sbjct: 121 KKMLSEGIMPDIYAYAAALAVCP 143


>gi|297817744|ref|XP_002876755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322593|gb|EFH53014.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 597

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 209/544 (38%), Positives = 313/544 (57%), Gaps = 41/544 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V++  F+    +   L++   + G +  AR VFDE     +  WN++  GYVRN    E
Sbjct: 33  VVIRTGFSEKNSLLTQLLENLVLVGDMCYARQVFDEMPKPRIFLWNTLFKGYVRNQLPFE 92

Query: 61  GLKLFDKMPQ---RND-------VSWNSILGGL--------------------------- 83
            + L+ KM     R D       V   S LG L                           
Sbjct: 93  SVLLYKKMRDLGVRPDEFTYPFVVKAISQLGVLPCGVSLHAHVLKNGFECLGIVATELVM 152

Query: 84  --VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
             ++FG +  A  +F  M  + LV+W   I+   Q G    AL  F +M +  ++ +S  
Sbjct: 153 MYMKFGELSSAEFLFESMQVKDLVAWNAFIAVCVQTGNSAIALEYFNKMCADAVQFDSFT 212

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           +VS+LSAC QLG+LD G  +Y   +K+ I+ + I+  A +DM+ KCGS + A  +F    
Sbjct: 213 VVSMLSACGQLGSLDIGEEIYDRARKEEIECNIIVENARLDMHLKCGSTEAARVLFDDMK 272

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
            ++V ++++ I G AMNG S EA  LF  M+++G+ P+ ++++ VLSACSH G V +G  
Sbjct: 273 QRNVVSWSTMIVGYAMNGDSGEALALFTMMQNEGLRPNYVTFLGVLSACSHAGLVNEGKR 332

Query: 262 YFHSMFDVH--GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACR 319
           YF  M  ++   ++P  +HYACMVDLLGR+GLLEEA  FI  M ++PD  IWG LLGAC 
Sbjct: 333 YFSLMVRLNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMRVEPDTGIWGALLGACA 392

Query: 320 VHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGC 379
           VHR+  +GQ++ ++L+E+  +    ++LLSNIY    K +  ++VR  MRK   K+    
Sbjct: 393 VHRDMILGQKVADVLVETAPDIGSYHVLLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAY 452

Query: 380 SLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETV 439
           S +E DG +H F  GD SH +++ IY+  +EI+KKI+N GY  +T SV  D+E EEKE+ 
Sbjct: 453 SSVEFDGKIHFFNRGDISHPQSKAIYEKLDEILKKIRNMGYVPDTGSVFHDVEMEEKESS 512

Query: 440 IGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHH 499
           + +HSEKLA+AFGLI  + G  IR++KN+R C DCH   K VS++  R+I +RD+  +HH
Sbjct: 513 LSHHSEKLAIAFGLINGRAGHPIRVMKNLRTCDDCHVFSKFVSRLTSREIIMRDKNRFHH 572

Query: 500 FEDG 503
           F +G
Sbjct: 573 FRNG 576


>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
 gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 201/502 (40%), Positives = 312/502 (62%), Gaps = 20/502 (3%)

Query: 18  IQFYS--VCGRVRDARWVFDE----SDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQR 71
           + FYS  V   V  + + F        DL  +    +++G+V    ++ G  L       
Sbjct: 96  LYFYSRMVLSNVSPSNYTFTSVIKSCADLSALKHGRVVHGHV----LVHGFGL------- 144

Query: 72  NDVSWNSILGGLV-RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM 130
            DV   + L  L  + G + +A +VF+++ +RS+V+W  +ISG+ QNG  KEA+ LF  M
Sbjct: 145 -DVYVQAALVALYGKCGDLINARKVFDKIRERSIVAWNSMISGYEQNGFAKEAIGLFDRM 203

Query: 131 QSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSI 190
           +   +EP+SA  VS+LSACA LGA   G WV+ YI    + L+ +L  +LI+MY +CG++
Sbjct: 204 KETGVEPDSATFVSVLSACAHLGAFSLGCWVHEYIVGNGLDLNVVLGTSLINMYIRCGNV 263

Query: 191 DLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250
             A +VF S  +++V A+T+ I G   NG+  +A ELF  M+  G+ P+SI+++AVLSAC
Sbjct: 264 SKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLFPNSITFVAVLSAC 323

Query: 251 SHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA-SMPMKPDNV 309
           +H G V +G   F S+ + + + P ++H  C+VD+LGRAGLL+EA NFI   +P  P   
Sbjct: 324 AHAGLVNEGRRLFASIREEYHLVPGVEHNVCLVDMLGRAGLLDEAYNFIKEEIPENPAPA 383

Query: 310 IWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMR 369
           I   +LGAC++H+N ++G ++   L+ ++  +   Y++LSNIY    + +  E VR  M 
Sbjct: 384 ILTAMLGACKMHKNFDLGAQVAEHLLAAEPENPAHYVILSNIYALAGRMDQVEIVRNNMI 443

Query: 370 KRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMF 429
           ++ +K+  G S +E+D   + F  GD+SH +T  IY + +E++ K    GY   + SVM 
Sbjct: 444 RKCLKKQVGYSTVEVDQKTYLFSMGDKSHSETNAIYHYLDELMWKCSEAGYVPVSDSVMH 503

Query: 430 DIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKI 489
           ++EEEE+E  + YHSEKLA+AFGL+ T  G+ IRIVKN+R+C DCHSA+K +S +  R+I
Sbjct: 504 ELEEEEREYALRYHSEKLAIAFGLLKTSHGTPIRIVKNLRMCEDCHSAIKFISAISSREI 563

Query: 490 SIRDRKHYHHFEDGSCSCLEYW 511
            +RD+  +HHF+ GSCSCL+YW
Sbjct: 564 IVRDKLRFHHFKVGSCSCLDYW 585



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 120/234 (51%), Gaps = 44/234 (18%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+ + F  DV+V+ +L+  Y  CG + +AR VFD+  +  +V+WNSMI+GY +NG   E 
Sbjct: 137 VLVHGFGLDVYVQAALVALYGKCGDLINARKVFDKIRERSIVAWNSMISGYEQNGFAKEA 196

Query: 62  LKLFDKMPQR----------------------------------NDVSWNSILGG----- 82
           + LFD+M +                                   N +  N +LG      
Sbjct: 197 IGLFDRMKETGVEPDSATFVSVLSACAHLGAFSLGCWVHEYIVGNGLDLNVVLGTSLINM 256

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
            +R G+V  A  VF+ M +R++V+W  +ISG+  NG   +A+ LF EM+   L PNS   
Sbjct: 257 YIRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLFPNSITF 316

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI---LCAALIDMYAKCGSIDLA 193
           V++LSACA  G ++ G  +++ I+++   +  +   +C  L+DM  + G +D A
Sbjct: 317 VAVLSACAHAGLVNEGRRLFASIREEYHLVPGVEHNVC--LVDMLGRAGLLDEA 368



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 116/231 (50%), Gaps = 5/231 (2%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGR-PKEALALFREMQSLDLEPNSAILVSL 145
           GS+    ++F  +P      +  LI   +++      +L  +  M   ++ P++    S+
Sbjct: 58  GSISYTRQIFLAVPNPDSFLFTSLIKSTSKSHNFSIYSLYFYSRMVLSNVSPSNYTFTSV 117

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
           + +CA L AL +G  V+ ++      LD  + AAL+ +Y KCG +  A +VF    ++ +
Sbjct: 118 IKSCADLSALKHGRVVHGHVLVHGFGLDVYVQAALVALYGKCGDLINARKVFDKIRERSI 177

Query: 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHS 265
            A+ S I G   NG + EA  LF+ MK  G+ PDS ++++VLSAC+HLG    G  + H 
Sbjct: 178 VAWNSMISGYEQNGFAKEAIGLFDRMKETGVEPDSATFVSVLSACAHLGAFSLGC-WVHE 236

Query: 266 MFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVI-WGTLL 315
               +G+   +     ++++  R G + +A     S  MK  NV+ W  ++
Sbjct: 237 YIVGNGLDLNVVLGTSLINMYIRCGNVSKAREVFDS--MKERNVVAWTAMI 285



 Score = 41.6 bits (96), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 72/161 (44%), Gaps = 5/161 (3%)

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
           P+S     LL A  +L  L   + V+++I          L   L+++    GSI    Q+
Sbjct: 10  PHSPAYNFLLQAGPRLYLL---HQVHAHIIVSGYGRSRSLLTKLLNLACAAGSISYTRQI 66

Query: 197 FHSYGDKDVSAYTSAIFGLAMNGH-SIEAFELFENMKSKGISPDSISYIAVLSACSHLGW 255
           F +  + D   +TS I   + + + SI +   +  M    +SP + ++ +V+ +C+ L  
Sbjct: 67  FLAVPNPDSFLFTSLIKSTSKSHNFSIYSLYFYSRMVLSNVSPSNYTFTSVIKSCADLSA 126

Query: 256 VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAE 296
           ++ G    H    VHG   ++   A +V L G+ G L  A 
Sbjct: 127 LKHG-RVVHGHVLVHGFGLDVYVQAALVALYGKCGDLINAR 166


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 195/542 (35%), Positives = 300/542 (55%), Gaps = 41/542 (7%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D+   N LI  YS CG V  AR VFDE     +VSWN+MI    +NGE  E L L  +M 
Sbjct: 98  DLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQM- 156

Query: 70  QRNDVSWN----------------------------------------SILGGLVRFGSV 89
           QR    ++                                        ++L    + G +
Sbjct: 157 QREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLM 216

Query: 90  DDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
            DA  VF  MP RS+V+W  + +G+ QN   ++ALALFR+     L+ +  ++ S++ AC
Sbjct: 217 KDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICAC 276

Query: 150 AQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYT 209
           A L A+  G  + + + K     +  + ++LIDMYAKCG I+ + +VF     ++V  + 
Sbjct: 277 AGLAAMIEGKQMNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWN 336

Query: 210 SAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDV 269
           + I GL+ +  S+E   LFE M+  G+SP+ +++++VLSAC H+G V KG  YF  M   
Sbjct: 337 AMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVRKGQKYFDLMTKE 396

Query: 270 HGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQR 329
           H + P + HY+CMVD L RAG + EA + I+ +P      +WG+LL +CR H N E+ + 
Sbjct: 397 HHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGNLELAEV 456

Query: 330 IGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVH 389
               L + + ++ G Y+LLSN+Y    K +   ++RK +++  +K+  G S IE+   VH
Sbjct: 457 AAKKLFDIEPHNSGNYLLLSNMYAANGKWDEVAKMRKLLKESDVKKERGKSWIEIKDKVH 516

Query: 390 EFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLAL 449
            F+ G+R+H K  EIY    E++ +++  GY VET+  +  + E  K+ ++ +HSEKLA 
Sbjct: 517 LFMVGERNHPKIVEIYSKLNEVMDELQKLGYKVETQHDLHQVGESIKQELLRHHSEKLAF 576

Query: 450 AFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLE 509
             GL+   P + IRI+KN+RIC DCHS MKL SK F R + +RD   +HHF++G CSC +
Sbjct: 577 TMGLLFLPPNAPIRIMKNLRICGDCHSFMKLASKFFCRDVIVRDTNRFHHFKNGCCSCGD 636

Query: 510 YW 511
           +W
Sbjct: 637 FW 638



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/307 (23%), Positives = 128/307 (41%), Gaps = 72/307 (23%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
            +K +   +VFV  +L+  Y+ CG ++DA  VF+   D  VV+W+SM  GYV+N    + 
Sbjct: 191 AIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQA 250

Query: 62  LKLFDKMPQR---------------------------------------NDVSWNSILGG 82
           L LF K  +                                        N    +S++  
Sbjct: 251 LALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGFCSNIFVASSLIDM 310

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G ++++ +VF  + KR++V W  +ISG +++ R  E + LF +MQ + L PN    
Sbjct: 311 YAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTF 370

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           VS+LSAC  +G +  G   +  + K+                       LA  VFH    
Sbjct: 371 VSVLSACGHMGLVRKGQKYFDLMTKE---------------------HHLAPNVFH---- 405

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
                Y+  +  L+  G   EA++L   +     +  +  + ++L++C   G +E     
Sbjct: 406 -----YSCMVDTLSRAGQIFEAYDLISKLP---FNASASMWGSLLASCRTHGNLELAEVA 457

Query: 263 FHSMFDV 269
              +FD+
Sbjct: 458 AKKLFDI 464



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 87/165 (52%), Gaps = 12/165 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++ K+ F  ++FV +SLI  Y+ CG + ++  VF + +  +VV WN+MI+G  R+   LE
Sbjct: 291 LLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLE 350

Query: 61  GLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLI 111
            + LF+KM Q     NDV++ S+L      G V    + F+ M K      ++  +  ++
Sbjct: 351 VMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVRKGQKYFDLMTKEHHLAPNVFHYSCMV 410

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALD 156
              ++ G+  EA  L   +  L    ++++  SLL++C   G L+
Sbjct: 411 DTLSRAGQIFEAYDL---ISKLPFNASASMWGSLLASCRTHGNLE 452



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 80/174 (45%), Gaps = 10/174 (5%)

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           +L  CA+   L  G   ++ I    +K D +    LI+MY+KCGS+D A QVF     + 
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRS 129

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           + ++ + I  L  NG   EA +L   M+ +G      +  +VL AC+    + +      
Sbjct: 130 LVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSEC----- 184

Query: 265 SMFDVHGIKPELDH----YACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTL 314
            +     IK  +D        ++D+  + GL+++A     SMP +   V W ++
Sbjct: 185 QLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDR-SVVTWSSM 237


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 199/576 (34%), Positives = 307/576 (53%), Gaps = 74/576 (12%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVF------------------------DESDDL----- 40
           D+ V NSL+ +Y+ C  V  AR  F                        +E+ +L     
Sbjct: 397 DLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMK 456

Query: 41  ------DVVSWNSMINGYVRNGEILEGLKLFDKMPQRN-DVSWNSILGGLVRFGSVDD-- 91
                 D+++WN ++ G+ + G+    L+ F +M     D +  +I G L   G V +  
Sbjct: 457 FQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLK 516

Query: 92  ------------------------------------ACRVFNQMPKRSLVSWVVLISGFA 115
                                               AC VF+++  R +V W  +IS  A
Sbjct: 517 LGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACA 576

Query: 116 QNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI 175
           Q+GR   AL L REM   ++E N+  +VS L AC++L AL  G  ++ +I +  +   + 
Sbjct: 577 QSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNF 636

Query: 176 LCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG 235
           +  +LIDMY +CGSI  + ++F     +D+ ++   I    M+G  ++A  LF+  ++ G
Sbjct: 637 ILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMG 696

Query: 236 ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA 295
           + P+ I++  +LSACSH G +E+G+ YF  M   + + P ++ YACMVDLL RAG   E 
Sbjct: 697 LKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNET 756

Query: 296 ENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVET 355
             FI  MP +P+  +WG+LLGACR+H N ++ +     L E +    G Y+L++NIY   
Sbjct: 757 LEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAA 816

Query: 356 LKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKI 415
            + E+A ++R  M++R + + PGCS IE+   +H F+ GD SH   ++I    E +   I
Sbjct: 817 GRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDI 876

Query: 416 KNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCH 475
           K  GY  +T  V+ D++E+EKE  +  HSEK+ALAFGLI T  G+ +RI+KN+R+C DCH
Sbjct: 877 KEIGYVPDTNFVLQDVDEDEKEFSLCGHSEKIALAFGLISTTAGTPLRIIKNLRVCGDCH 936

Query: 476 SAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           SA K +SKV KR I +RD   +HHF DG CSC +YW
Sbjct: 937 SATKFISKVEKRDIIMRDNYRFHHFVDGVCSCGDYW 972



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 100/332 (30%), Positives = 160/332 (48%), Gaps = 51/332 (15%)

Query: 13  VKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP--- 69
           VK S++  +  CGR+  AR  F+E +  DV  WN M++GY   GE  + LK    M    
Sbjct: 227 VKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSG 286

Query: 70  -QRNDVSWNSILGGLVRFGSVDDACRVFNQMP-----KRSLVSWVVLISGFAQNGRPKEA 123
            + + V+WN+I+ G  + G  ++A + F +M      K ++VSW  LI+G  QNG   EA
Sbjct: 287 VKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEA 346

Query: 124 LALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKL-----DSILCA 178
           L++FR+M    ++PNS  + S +SAC  L  L +G  ++ Y    CIK+     D ++  
Sbjct: 347 LSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGY----CIKVEELDSDLLVGN 402

Query: 179 ALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISP 238
           +L+D YAKC S+++A + F      D+ ++ + + G A+ G   EA EL   MK +GI P
Sbjct: 403 SLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEP 462

Query: 239 DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENF 298
           D I++  +++  +  G  +    +F  M                                
Sbjct: 463 DIITWNGLVTGFTQYGDGKAALEFFQRMH------------------------------- 491

Query: 299 IASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
             SM M P+       L AC   RN ++G+ I
Sbjct: 492 --SMGMDPNTTTISGALAACGQVRNLKLGKEI 521



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 148/290 (51%), Gaps = 6/290 (2%)

Query: 36  ESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRV 95
           E  D D++  NS+++ Y +   +    + F  + Q + VSWN++L G    GS ++A  +
Sbjct: 392 EELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIEL 451

Query: 96  FNQMP----KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
            ++M     +  +++W  L++GF Q G  K AL  F+ M S+ ++PN+  +   L+AC Q
Sbjct: 452 LSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQ 511

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSA 211
           +  L  G  ++ Y+ +  I+L + + +ALI MY+ C S+++A  VF     +DV  + S 
Sbjct: 512 VRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSI 571

Query: 212 IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG 271
           I   A +G S+ A +L   M    +  ++++ ++ L ACS L  + +G    H      G
Sbjct: 572 ISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQG-KEIHQFIIRCG 630

Query: 272 IKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           +         ++D+ GR G ++++      MP + D V W  ++    +H
Sbjct: 631 LDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQR-DLVSWNVMISVYGMH 679



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 116/235 (49%), Gaps = 3/235 (1%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           G V+DA R+F++M +R++ SW  ++  +   G  +E + LF  M +  + P+  +   + 
Sbjct: 138 GCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVF 197

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
            AC++L     G  VY Y+     + +S +  +++DM+ KCG +D+A + F     KDV 
Sbjct: 198 KACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVF 257

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
            +   + G    G   +A +   +MK  G+ PD +++ A++S  +  G  E+   YF  M
Sbjct: 258 MWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEM 317

Query: 267 FDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPM---KPDNVIWGTLLGAC 318
             +   KP +  +  ++    + G   EA +    M +   KP+++   + + AC
Sbjct: 318 GGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSAC 372



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 110/235 (46%), Gaps = 42/235 (17%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V++N       V ++LI  YS C  +  A  VF E    DVV WNS+I+   ++G  +  
Sbjct: 525 VLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNA 584

Query: 62  LKLFDKMP----QRNDVSW-------------------------------NSILGGLV-- 84
           L L  +M     + N V+                                N IL  L+  
Sbjct: 585 LDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDM 644

Query: 85  --RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             R GS+  + R+F+ MP+R LVSW V+IS +  +G   +A+ LF++ +++ L+PN    
Sbjct: 645 YGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITF 704

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSIL--CAALIDMYAKCGSIDLAMQ 195
            +LLSAC+  G ++ G W Y  + K    +D  +   A ++D+ ++ G  +  ++
Sbjct: 705 TNLLSACSHSGLIEEG-WKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLE 758



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 96/220 (43%), Gaps = 8/220 (3%)

Query: 102 RSLVSWVVLISGFA------QNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGAL 155
           R L +    I+GF+      +NG    A  L   M   + +    I  S+L  C +L  L
Sbjct: 46  RKLTNARQRITGFSGGGSVHRNGVLNNAAMLLSSMDLTNPDECIEIYASILQKCRKLYNL 105

Query: 156 DYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGL 215
             G  V++ +    + +   L + L+++Y + G ++ A ++F    +++V ++T+ +   
Sbjct: 106 RLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMY 165

Query: 216 AMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE 275
              G   E  +LF  M ++G+ PD   +  V  ACS L     G   +  M  + G +  
Sbjct: 166 CGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSI-GFEGN 224

Query: 276 LDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
                 ++D+  + G ++ A  F   +  K D  +W  ++
Sbjct: 225 SCVKGSILDMFIKCGRMDIARRFFEEIEFK-DVFMWNIMV 263


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 199/550 (36%), Positives = 317/550 (57%), Gaps = 42/550 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDL-DVVSWNSMINGYVRNGEILE 60
           VVK  F +D  ++ +L+  YS C  + DA  +F E   + +VVSW +MI+G+++N    E
Sbjct: 321 VVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEE 380

Query: 61  GLKLFDKMPQR----NDVSWNSILGGL-------------------------------VR 85
            + LF +M ++    N+ +++ IL  L                               V+
Sbjct: 381 AVDLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVK 440

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
            G V++A +VF+ +  + +V+W  +++G+AQ G  + A+ +F E+    ++PN     S+
Sbjct: 441 LGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSI 500

Query: 146 LSACAQLGA-LDYGNWVYSYIQKKCIKLDSILC--AALIDMYAKCGSIDLAMQVFHSYGD 202
           L+ CA   A +  G   + +  K   +LDS LC  +AL+ MYAK G+I+ A +VF    +
Sbjct: 501 LNVCAATNASMGQGKQFHGFAIKS--RLDSSLCVSSALLTMYAKKGNIESAEEVFKRQRE 558

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           KD+ ++ S I G A +G +++A ++F+ MK + +  D +++I V +AC+H G VE+G  Y
Sbjct: 559 KDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKY 618

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F  M     I P  +H +CMVDL  RAG LE+A   I +MP    + IW T+L ACRVH+
Sbjct: 619 FDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHK 678

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
             E+G+     +I         Y+LLSN+Y E+   +   +VRK M +R +K+ PG S I
Sbjct: 679 KTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWI 738

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E+    + FLAGDRSH    +IY   E++  ++K+ GY  +T  V+ DI++E KE V+  
Sbjct: 739 EVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQ 798

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF-E 501
           HSE+LA+AFGLI T  GS + I+KN+R+C DCH  +KL++K+ +R+I +RD   +HHF  
Sbjct: 799 HSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSS 858

Query: 502 DGSCSCLEYW 511
           DG CSC ++W
Sbjct: 859 DGVCSCGDFW 868



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/368 (28%), Positives = 171/368 (46%), Gaps = 53/368 (14%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +VVKN     + V NSLI  Y  CG VR AR +FD+++   VV+WNSMI+GY  NG  LE
Sbjct: 219 VVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLE 278

Query: 61  GLKLFDKMP----QRNDVSWNSILG----------------GLVRFG------------- 87
            L +F  M     + ++ S+ S++                  +V++G             
Sbjct: 279 ALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMV 338

Query: 88  ------SVDDACRVFNQMP-KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
                 ++ DA R+F ++    ++VSW  +ISGF QN   +EA+ LF EM+   + PN  
Sbjct: 339 AYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEF 398

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
               +L+A   +   +    V++ + K   +  S +  AL+D Y K G ++ A +VF   
Sbjct: 399 TYSVILTALPVISPSE----VHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGI 454

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
            DKD+ A+++ + G A  G +  A ++F  +   GI P+  ++ ++L+ C+         
Sbjct: 455 DDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQG 514

Query: 261 YYFHSMFDVHGIKPELDHYAC----MVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLG 316
             FH       IK  LD   C    ++ +  + G +E AE        K D V W +++ 
Sbjct: 515 KQFHGF----AIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREK-DLVSWNSMIS 569

Query: 317 ACRVHRNA 324
               H  A
Sbjct: 570 GYAQHGQA 577



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 114/449 (25%), Positives = 191/449 (42%), Gaps = 85/449 (18%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +K  F  DV V  SL+  Y      +D R VFDE  + +VV+W ++I+GY RN    E L
Sbjct: 120 IKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVL 179

Query: 63  KLFDKM----PQRNDVSWNSILGGL----------------------------------- 83
            LF +M     Q N  ++ + LG L                                   
Sbjct: 180 TLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLY 239

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
           ++ G+V  A  +F++   +S+V+W  +ISG+A NG   EAL +F  M+   +  + +   
Sbjct: 240 LKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFA 299

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG-D 202
           S++  CA L  L +   ++  + K     D  +  AL+  Y+KC ++  A+++F   G  
Sbjct: 300 SVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCV 359

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS----------- 251
            +V ++T+ I G   N    EA +LF  MK KG+ P+  +Y  +L+A             
Sbjct: 360 GNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQV 419

Query: 252 --------------------HLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGL 291
                                LG VE+    F  + D      ++  ++ M+    + G 
Sbjct: 420 VKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDD-----KDIVAWSAMLAGYAQTGE 474

Query: 292 LEEAENFIASMP---MKPDNVIWGTLLGACRVHRNAEMGQ--RIGNMLIES--DQNHDGR 344
            E A      +    +KP+   + ++L  C    NA MGQ  +     I+S  D +    
Sbjct: 475 TEAAIKMFGELTKGGIKPNEFTFSSILNVC-AATNASMGQGKQFHGFAIKSRLDSSLCVS 533

Query: 345 YILLSNIYVETLKGENAEEVRKTMRKRKI 373
             LL+ +Y +    E+AEEV K  R++ +
Sbjct: 534 SALLT-MYAKKGNIESAEEVFKRQREKDL 561



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 126/267 (47%), Gaps = 39/267 (14%)

Query: 26  RVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLF---DKMPQRNDVS-WNSILG 81
           R+ +A  +FD+S   D  S+ S++ G+ R+G   E  +LF    ++    D S ++S+L 
Sbjct: 42  RLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLK 101

Query: 82  ----------------GLVRFGSVDDAC-------------------RVFNQMPKRSLVS 106
                             ++FG +DD                     +VF++M +R++V+
Sbjct: 102 VSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVT 161

Query: 107 WVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQ 166
           W  LISG+A+N    E L LF  MQ+   +PNS    + L   A+ G    G  V++ + 
Sbjct: 162 WTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVV 221

Query: 167 KKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFE 226
           K  +     +  +LI++Y KCG++  A  +F     K V  + S I G A NG  +EA  
Sbjct: 222 KNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALG 281

Query: 227 LFENMKSKGISPDSISYIAVLSACSHL 253
           +F +M+   +     S+ +V+  C++L
Sbjct: 282 MFYSMRLNYVRLSESSFASVIKLCANL 308



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 115/239 (48%), Gaps = 15/239 (6%)

Query: 86  FGSVD-----DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
           FG+V      +A  +F++ P R   S++ L+ GF+++GR +EA  LF  +  L +E + +
Sbjct: 35  FGTVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCS 94

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKL----DSILCAALIDMYAKCGSIDLAMQV 196
           I  S+L   A L    +G  ++     +CIK     D  +  +L+D Y K  +     +V
Sbjct: 95  IFSSVLKVSATLCDELFGRQLHC----QCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKV 150

Query: 197 FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWV 256
           F    +++V  +T+ I G A N  + E   LF  M+++G  P+S ++ A L   +  G  
Sbjct: 151 FDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVG 210

Query: 257 EKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
            +G    H++   +G+   +     +++L  + G + +A        +K   V W +++
Sbjct: 211 GRGL-QVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVK-SVVTWNSMI 267


>gi|242080213|ref|XP_002444875.1| hypothetical protein SORBIDRAFT_07g000750 [Sorghum bicolor]
 gi|241941225|gb|EES14370.1| hypothetical protein SORBIDRAFT_07g000750 [Sorghum bicolor]
          Length = 583

 Score =  369 bits (948), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 192/430 (44%), Positives = 283/430 (65%), Gaps = 8/430 (1%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           G +D A ++F+ +  RS+V+W  +ISG+ QNG    A+ ++REM+     P+SA  V+ L
Sbjct: 157 GKLDVARKLFDAIRDRSVVAWNAMISGYEQNGLAGRAIEVYREMRVAGEAPDSATFVATL 216

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
           SACAQ GALD G+ V   I  + ++++ +L AAL++MYA+CG ++ A + F    +++V 
Sbjct: 217 SACAQAGALDLGHEVERLIVSERMEMNVVLGAALVNMYARCGLVNKAREWFDMLQERNVV 276

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
            +TS I G  M+GH  EA +LF+ M+ +G  P+ ++++AVLSAC+H G V  G   F SM
Sbjct: 277 TWTSMIAGYGMHGHGGEAVKLFDLMRQQGPPPNDVTFVAVLSACAHAGLVSDGRDAFASM 336

Query: 267 FDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA-SMPMKPDNVIWGTLLGACRVHRNAE 325
             V+G+ P  +HY  MVD+ GRAGLL++A  FI  S+P +P   +W  +LGAC++H+N  
Sbjct: 337 KSVYGLVPRAEHYCSMVDMYGRAGLLDDAMQFIHDSIPGEPGPEVWTAMLGACKMHKNFS 396

Query: 326 MGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELD 385
           +G  +   LI  +  +    +LLSNIY  + K  + E+VR TM KR++K+  G SLIE+ 
Sbjct: 397 LGVEVAERLIALEPENPSHRVLLSNIYALSGKMNHVEKVRNTMIKRRLKKPIGYSLIEIG 456

Query: 386 GVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSE 445
           GV H F  G++SH KT EIYQ+ E+++ +I + GY  ET SV+ ++EEEE+E  + YH E
Sbjct: 457 GVAHVFRMGEKSHPKTPEIYQYLEKLIHRITDAGYMPETDSVLHELEEEEREFALRYHGE 516

Query: 446 KLALAFGLI----CTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
           KLA+AFGL+    CT P   IRI+KN+RIC DCH A+K +S V  R+I +RD   +HHF+
Sbjct: 517 KLAVAFGLMMTSGCTAP---IRIIKNLRICGDCHLAIKYMSAVENREIIVRDMHRFHHFK 573

Query: 502 DGSCSCLEYW 511
            G CSC EYW
Sbjct: 574 AGKCSCQEYW 583



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 135/285 (47%), Gaps = 46/285 (16%)

Query: 7   FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNG------EILE 60
           F  D FV+ +L+  YS CG++  AR +FD   D  VV+WN+MI+GY +NG      E+  
Sbjct: 139 FGSDRFVQTALVVLYSKCGKLDVARKLFDAIRDRSVVAWNAMISGYEQNGLAGRAIEVYR 198

Query: 61  GLKLFDKMP------------------------QRNDVS----WNSILGGLV-----RFG 87
            +++  + P                        +R  VS     N +LG  +     R G
Sbjct: 199 EMRVAGEAPDSATFVATLSACAQAGALDLGHEVERLIVSERMEMNVVLGAALVNMYARCG 258

Query: 88  SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLS 147
            V+ A   F+ + +R++V+W  +I+G+  +G   EA+ LF  M+     PN    V++LS
Sbjct: 259 LVNKAREWFDMLQERNVVTWTSMIAGYGMHGHGGEAVKLFDLMRQQGPPPNDVTFVAVLS 318

Query: 148 ACAQLGALDYGNWVYSYIQK--KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY--GDK 203
           ACA  G +  G   ++ ++     +      C +++DMY + G +D AMQ  H    G+ 
Sbjct: 319 ACAHAGLVSDGRDAFASMKSVYGLVPRAEHYC-SMVDMYGRAGLLDDAMQFIHDSIPGEP 377

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248
               +T+ +    M+ +     E+ E + +  + P++ S+  +LS
Sbjct: 378 GPEVWTAMLGACKMHKNFSLGVEVAERLIA--LEPENPSHRVLLS 420



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 157/339 (46%), Gaps = 20/339 (5%)

Query: 110 LISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC 169
           L    A+ G P  ALA +R + +  L  +S    S+  ACA L AL  G  V+++     
Sbjct: 79  LTRAAARRGLPAAALAFYRRLLAAALPFSSFAFTSVAKACADLSALRAGMGVHAHAVLLG 138

Query: 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFE 229
              D  +  AL+ +Y+KCG +D+A ++F +  D+ V A+ + I G   NG +  A E++ 
Sbjct: 139 FGSDRFVQTALVVLYSKCGKLDVARKLFDAIRDRSVVAWNAMISGYEQNGLAGRAIEVYR 198

Query: 230 NMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRA 289
            M+  G +PDS +++A LSAC+  G ++ G +    +     ++  +   A +V++  R 
Sbjct: 199 EMRVAGEAPDSATFVATLSACAQAGALDLG-HEVERLIVSERMEMNVVLGAALVNMYARC 257

Query: 290 GLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNML-IESDQNHDGRYI-L 347
           GL+ +A  +   M  + + V W +++    +H +     ++ +++  +    +D  ++ +
Sbjct: 258 GLVNKAREWF-DMLQERNVVTWTSMIAGYGMHGHGGEAVKLFDLMRQQGPPPNDVTFVAV 316

Query: 348 LSNIYVETL--KGENAEEVRKTMRKRKIKRAPGCSLIELDG----------VVHEFLAGD 395
           LS      L   G +A    K++     +    CS++++ G           +H+ + G 
Sbjct: 317 LSACAHAGLVSDGRDAFASMKSVYGLVPRAEHYCSMVDMYGRAGLLDDAMQFIHDSIPG- 375

Query: 396 RSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEE 434
              E   E++       K  KN+   VE    +  +E E
Sbjct: 376 ---EPGPEVWTAMLGACKMHKNFSLGVEVAERLIALEPE 411



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 15/160 (9%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++V      +V +  +L+  Y+ CG V  AR  FD   + +VV+W SMI GY  +G   E
Sbjct: 234 LIVSERMEMNVVLGAALVNMYARCGLVNKAREWFDMLQERNVVTWTSMIAGYGMHGHGGE 293

Query: 61  GLKLFDKM----PQRNDVSWNSILGGLVRFGSVDDACRVFNQM-------PKRSLVSWVV 109
            +KLFD M    P  NDV++ ++L      G V D    F  M       P+     +  
Sbjct: 294 AVKLFDLMRQQGPPPNDVTFVAVLSACAHAGLVSDGRDAFASMKSVYGLVPRAE--HYCS 351

Query: 110 LISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
           ++  + + G   +A+    +  S+  EP   +  ++L AC
Sbjct: 352 MVDMYGRAGLLDDAMQFIHD--SIPGEPGPEVWTAMLGAC 389


>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
          Length = 695

 Score =  369 bits (948), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 207/557 (37%), Positives = 316/557 (56%), Gaps = 57/557 (10%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRN-GEILEGLKLFDKMP 69
           +F+   ++Q  S    V  A  VFD  ++     WN++I     +     E   L+ KM 
Sbjct: 140 LFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKML 199

Query: 70  QRNDVSWNS------------ILG------------------------GLVRF----GSV 89
           +R + S +             I G                        GL+      G +
Sbjct: 200 ERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCL 259

Query: 90  DDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
           D A +VF++MP+RSLVSW  +I    + G    AL LFREMQ    EP+   + S+LSAC
Sbjct: 260 DLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQR-SFEPDGYTMQSVLSAC 318

Query: 150 AQLGALDYGNWVYSYIQKKC---IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
           A LG+L  G W ++++ +KC   + +D ++  +LI+MY KCGS+ +A QVF     +D++
Sbjct: 319 AGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLA 378

Query: 207 AYTSAIFGLAMNGHSIEAFELFENM--KSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           ++ + I G A +G + EA   F+ M  K + + P+S++++ +L AC+H G+V KG  YF 
Sbjct: 379 SWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFD 438

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC-RVHRN 323
            M   + I+P L+HY C+VDL+ RAG + EA + + SMPMKPD VIW +LL AC +   +
Sbjct: 439 MMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGAS 498

Query: 324 AEMGQRIGNMLI-------ESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRA 376
            E+ + I   +I        S+ N  G Y+LLS +Y    +  +   VRK M +  I++ 
Sbjct: 499 VELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKE 558

Query: 377 PGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVE-TRSVMFDIEEE- 434
           PGCS IE++G+ HEF AGD SH +T++IYQ  + I  ++++ GY  + +++ + D   + 
Sbjct: 559 PGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDG 618

Query: 435 EKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDR 494
            KE  +  HSE+LA+AFGLI   P + IRI KN+R+C+DCH   KL+SKVF  +I +RDR
Sbjct: 619 SKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDR 678

Query: 495 KHYHHFEDGSCSCLEYW 511
             +HHF+DGSCSCL+YW
Sbjct: 679 VRFHHFKDGSCSCLDYW 695


>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g59720, mitochondrial; Flags: Precursor
 gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 638

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 207/557 (37%), Positives = 316/557 (56%), Gaps = 57/557 (10%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRN-GEILEGLKLFDKMP 69
           +F+   ++Q  S    V  A  VFD  ++     WN++I     +     E   L+ KM 
Sbjct: 83  LFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKML 142

Query: 70  QRNDVSWNS------------ILG------------------------GLVRF----GSV 89
           +R + S +             I G                        GL+      G +
Sbjct: 143 ERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCL 202

Query: 90  DDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
           D A +VF++MP+RSLVSW  +I    + G    AL LFREMQ    EP+   + S+LSAC
Sbjct: 203 DLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQR-SFEPDGYTMQSVLSAC 261

Query: 150 AQLGALDYGNWVYSYIQKKC---IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
           A LG+L  G W ++++ +KC   + +D ++  +LI+MY KCGS+ +A QVF     +D++
Sbjct: 262 AGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLA 321

Query: 207 AYTSAIFGLAMNGHSIEAFELFENM--KSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           ++ + I G A +G + EA   F+ M  K + + P+S++++ +L AC+H G+V KG  YF 
Sbjct: 322 SWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFD 381

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC-RVHRN 323
            M   + I+P L+HY C+VDL+ RAG + EA + + SMPMKPD VIW +LL AC +   +
Sbjct: 382 MMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGAS 441

Query: 324 AEMGQRIGNMLI-------ESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRA 376
            E+ + I   +I        S+ N  G Y+LLS +Y    +  +   VRK M +  I++ 
Sbjct: 442 VELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKE 501

Query: 377 PGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVE-TRSVMFDIEEE- 434
           PGCS IE++G+ HEF AGD SH +T++IYQ  + I  ++++ GY  + +++ + D   + 
Sbjct: 502 PGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDG 561

Query: 435 EKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDR 494
            KE  +  HSE+LA+AFGLI   P + IRI KN+R+C+DCH   KL+SKVF  +I +RDR
Sbjct: 562 SKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDR 621

Query: 495 KHYHHFEDGSCSCLEYW 511
             +HHF+DGSCSCL+YW
Sbjct: 622 VRFHHFKDGSCSCLDYW 638


>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g11460
 gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
 gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 199/552 (36%), Positives = 312/552 (56%), Gaps = 49/552 (8%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVS--WNSMINGYVRNGEIL 59
           V K     + FV  +LI  Y  CG V DAR VF+E+     +S  +N++I+GY  N ++ 
Sbjct: 79  VTKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVT 138

Query: 60  EGLKLFDKMPQRNDVSWNSIL--------------------------GGL---------- 83
           +   +F +M +   VS +S+                           GGL          
Sbjct: 139 DAAYMFRRM-KETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSF 197

Query: 84  ----VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS 139
               ++ GSV+   R+F++MP + L++W  +ISG++QNG   + L L+ +M+S  + P+ 
Sbjct: 198 ITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDP 257

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
             LVS+LS+CA LGA   G+ V   ++      +  +  A I MYA+CG++  A  VF  
Sbjct: 258 FTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDI 317

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
              K + ++T+ I    M+G       LF++M  +GI PD   ++ VLSACSH G  +KG
Sbjct: 318 MPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKG 377

Query: 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACR 319
              F +M   + ++P  +HY+C+VDLLGRAG L+EA  FI SMP++PD  +WG LLGAC+
Sbjct: 378 LELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACK 437

Query: 320 VHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGC 379
           +H+N +M +     +IE + N+ G Y+L+SNIY ++   E    +R  MR+R  ++ PG 
Sbjct: 438 IHKNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGY 497

Query: 380 SLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETV 439
           S +E  G VH FLAGDRSHE+T+E+++  +E+   +     N++          EE  + 
Sbjct: 498 SYVEHKGRVHLFLAGDRSHEQTEEVHRMLDELETSVMELAGNMDCD------RGEEVSST 551

Query: 440 IGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHH 499
              HSE+LA+AFG++ + PG+ I ++KN+R+C DCH  +K VSK+  R+  +RD   +H+
Sbjct: 552 TREHSERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFLKQVSKIVDRQFVVRDASRFHY 611

Query: 500 FEDGSCSCLEYW 511
           F+DG CSC +YW
Sbjct: 612 FKDGVCSCKDYW 623



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 74/158 (46%), Gaps = 12/158 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V  N F  +VFV N+ I  Y+ CG +  AR VFD      +VSW +MI  Y  +G    
Sbjct: 282 LVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEI 341

Query: 61  GLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLI 111
           GL LFD M +R    +   +  +L      G  D    +F  M +   +      +  L+
Sbjct: 342 GLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLV 401

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
               + GR  EA+     ++S+ +EP+ A+  +LL AC
Sbjct: 402 DLLGRAGRLDEAMEF---IESMPVEPDGAVWGALLGAC 436



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 86/201 (42%), Gaps = 3/201 (1%)

Query: 107 WVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQ 166
           W V +   A      E+++L+R M      P++     +L +CA L     G  ++ ++ 
Sbjct: 21  WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80

Query: 167 KKCIKLDSILCAALIDMYAKCGSIDLAMQVF--HSYGDKDVSAYTSAIFGLAMNGHSIEA 224
           K   + +  +  ALI MY KCG +  A +VF  +    +    Y + I G   N    +A
Sbjct: 81  KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDA 140

Query: 225 FELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVD 284
             +F  MK  G+S DS++ + ++  C+   ++  G    H      G+  E+      + 
Sbjct: 141 AYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLG-RSLHGQCVKGGLDSEVAVLNSFIT 199

Query: 285 LLGRAGLLEEAENFIASMPMK 305
           +  + G +E        MP+K
Sbjct: 200 MYMKCGSVEAGRRLFDEMPVK 220


>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
          Length = 615

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 207/557 (37%), Positives = 316/557 (56%), Gaps = 57/557 (10%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRN-GEILEGLKLFDKMP 69
           +F+   ++Q  S    V  A  VFD  ++     WN++I     +     E   L+ KM 
Sbjct: 60  LFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKML 119

Query: 70  QRNDVSWNS------------ILG------------------------GLVRF----GSV 89
           +R + S +             I G                        GL+      G +
Sbjct: 120 ERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCL 179

Query: 90  DDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
           D A +VF++MP+RSLVSW  +I    + G    AL LFREMQ    EP+   + S+LSAC
Sbjct: 180 DLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQR-SFEPDGYTMQSVLSAC 238

Query: 150 AQLGALDYGNWVYSYIQKKC---IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
           A LG+L  G W ++++ +KC   + +D ++  +LI+MY KCGS+ +A QVF     +D++
Sbjct: 239 AGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLA 298

Query: 207 AYTSAIFGLAMNGHSIEAFELFENM--KSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           ++ + I G A +G + EA   F+ M  K + + P+S++++ +L AC+H G+V KG  YF 
Sbjct: 299 SWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFD 358

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC-RVHRN 323
            M   + I+P L+HY C+VDL+ RAG + EA + + SMPMKPD VIW +LL AC +   +
Sbjct: 359 MMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGAS 418

Query: 324 AEMGQRIGNMLI-------ESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRA 376
            E+ + I   +I        S+ N  G Y+LLS +Y    +  +   VRK M +  I++ 
Sbjct: 419 VELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKE 478

Query: 377 PGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVE-TRSVMFDIEEE- 434
           PGCS IE++G+ HEF AGD SH +T++IYQ  + I  ++++ GY  + +++ + D   + 
Sbjct: 479 PGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDG 538

Query: 435 EKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDR 494
            KE  +  HSE+LA+AFGLI   P + IRI KN+R+C+DCH   KL+SKVF  +I +RDR
Sbjct: 539 SKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDR 598

Query: 495 KHYHHFEDGSCSCLEYW 511
             +HHF+DGSCSCL+YW
Sbjct: 599 VRFHHFKDGSCSCLDYW 615


>gi|356575510|ref|XP_003555883.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Glycine max]
          Length = 618

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 193/551 (35%), Positives = 301/551 (54%), Gaps = 42/551 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++     D+   N LI  YS C  V  AR  F+E     +VSWN++I    +N E  E 
Sbjct: 69  IIRIGLEMDILTSNMLINMYSKCSLVDSARKKFNEMPVKSLVSWNTVIGALTQNAEDREA 128

Query: 62  LKLFDKMPQRNDVSWN----------------------------------------SILG 81
           LKL  +M QR    +N                                        ++L 
Sbjct: 129 LKLLIQM-QREGTPFNEFTISSVLCNCAFKCAILECMQLHAFSIKAAIDSNCFVGTALLH 187

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              +  S+ DA ++F  MP+++ V+W  +++G+ QNG  +EAL +FR  Q +  + +  +
Sbjct: 188 VYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNGFHEEALLIFRNAQLMGFDQDPFM 247

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           + S +SACA L  L  G  V++   K     +  + ++LIDMYAKCG I  A  VF    
Sbjct: 248 ISSAVSACAGLATLIEGKQVHAISHKSGFGSNIYVSSSLIDMYAKCGCIREAYLVFQGVL 307

Query: 202 D-KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
           + + +  + + I G A +  + EA  LFE M+ +G  PD ++Y+ VL+ACSH+G  E+G 
Sbjct: 308 EVRSIVLWNAMISGFARHARAPEAMILFEKMQQRGFFPDDVTYVCVLNACSHMGLHEEGQ 367

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
            YF  M   H + P + HY+CM+D+LGRAGL+ +A + I  MP    + +WG+LL +C++
Sbjct: 368 KYFDLMVRQHNLSPSVLHYSCMIDILGRAGLVHKAYDLIERMPFNATSSMWGSLLASCKI 427

Query: 321 HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS 380
           + N E  +     L E + N+ G +ILL+NIY    K +     RK +R+  +++  G S
Sbjct: 428 YGNIEFAEIAAKYLFEMEPNNAGNHILLANIYAANKKWDEVARARKLLRETDVRKERGTS 487

Query: 381 LIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVI 440
            IE+   +H F  G+R+H +  +IY   + +V ++K   Y V+T + + D+EE  K+ ++
Sbjct: 488 WIEIKNKIHSFTVGERNHPQIDDIYAKLDNLVVELKKLNYKVDTSNDLHDVEENRKQMLL 547

Query: 441 GYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF 500
            +HSEKLA+ FGL+C      IRI+KN+RIC DCH+ MKLVSK   R+I +RD   +HHF
Sbjct: 548 RHHSEKLAITFGLMCLPRDIPIRIIKNLRICGDCHTFMKLVSKSTSREIIVRDTNRFHHF 607

Query: 501 EDGSCSCLEYW 511
           +DG CSC E+W
Sbjct: 608 KDGFCSCGEFW 618



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/177 (21%), Positives = 77/177 (43%), Gaps = 10/177 (5%)

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           LL  CA+  +   G   ++ I +  +++D +    LI+MY+KC  +D A + F+    K 
Sbjct: 49  LLQLCAKTRSSMGGRACHAQIIRIGLEMDILTSNMLINMYSKCSLVDSARKKFNEMPVKS 108

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           + ++ + I  L  N    EA +L   M+ +G   +  +  +VL  C+    + +      
Sbjct: 109 LVSWNTVIGALTQNAEDREALKLLIQMQREGTPFNEFTISSVLCNCAFKCAILECM---- 164

Query: 265 SMFDVHGIKPELDHY----ACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
                  IK  +D        ++ +  +   +++A     SMP K + V W +++  
Sbjct: 165 -QLHAFSIKAAIDSNCFVGTALLHVYAKCSSIKDASQMFESMPEK-NAVTWSSMMAG 219


>gi|15226158|ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75101013|sp|P93011.1|PP182_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33760
 gi|1707020|gb|AAC69141.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253787|gb|AEC08881.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 583

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 183/441 (41%), Positives = 282/441 (63%), Gaps = 9/441 (2%)

Query: 79  ILGGLVRF----GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD 134
           +   LV F    G ++ A +VF++MP++S+V+W  L+SGF QNG   EA+ +F +M+   
Sbjct: 144 VQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESG 203

Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
            EP+SA  VSLLSACAQ GA+  G+WV+ YI  + + L+  L  ALI++Y++CG +  A 
Sbjct: 204 FEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAR 263

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK-GISPDSISYIAVLSACSHL 253
           +VF    + +V+A+T+ I     +G+  +A ELF  M+   G  P++++++AVLSAC+H 
Sbjct: 264 EVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHA 323

Query: 254 GWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMK---PDNVI 310
           G VE+G   +  M   + + P ++H+ CMVD+LGRAG L+EA  FI  +          +
Sbjct: 324 GLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATGKATAPAL 383

Query: 311 WGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370
           W  +LGAC++HRN ++G  I   LI  + ++ G +++LSNIY  + K +    +R  M +
Sbjct: 384 WTAMLGACKMHRNYDLGVEIAKRLIALEPDNPGHHVMLSNIYALSGKTDEVSHIRDGMMR 443

Query: 371 RKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFD 430
             +++  G S+IE++   + F  GD SH++T EIY++ E ++ + K  GY   +  VM  
Sbjct: 444 NNLRKQVGYSVIEVENKTYMFSMGDESHQETGEIYRYLETLISRCKEIGYAPVSEEVMHQ 503

Query: 431 IEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKIS 490
           +EEEEKE  + YHSEKLA+AFGL+ T     I IVKN+RIC DCHSA K +S V  R+I+
Sbjct: 504 VEEEEKEFALRYHSEKLAVAFGLLKT-VDVAITIVKNLRICEDCHSAFKYISIVSNRQIT 562

Query: 491 IRDRKHYHHFEDGSCSCLEYW 511
           +RD+  +HHF++GSCSCL+YW
Sbjct: 563 VRDKLRFHHFQNGSCSCLDYW 583



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 102/203 (50%), Gaps = 4/203 (1%)

Query: 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
           P   +A +R M S ++ P++    S++ +CA L AL  G  V+ +       LD+ + AA
Sbjct: 88  PLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAA 147

Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
           L+  Y+KCG ++ A QVF    +K + A+ S + G   NG + EA ++F  M+  G  PD
Sbjct: 148 LVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPD 207

Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI 299
           S +++++LSAC+  G V  G  + H      G+   +     +++L  R G + +A    
Sbjct: 208 SATFVSLLSACAQTGAVSLG-SWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVF 266

Query: 300 ASMPMKPDNV-IWGTLLGACRVH 321
               MK  NV  W  ++ A   H
Sbjct: 267 DK--MKETNVAAWTAMISAYGTH 287



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 120/258 (46%), Gaps = 48/258 (18%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           V + F  D +V+ +L+ FYS CG +  AR VFD   +  +V+WNS+++G+ +NG   E +
Sbjct: 134 VVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAI 193

Query: 63  KLFDKM-------------------PQRNDVSWNS------ILGGL-------------- 83
           ++F +M                    Q   VS  S      I  GL              
Sbjct: 194 QVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLY 253

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQ-SLDLEPNSAIL 142
            R G V  A  VF++M + ++ +W  +IS +  +G  ++A+ LF +M+      PN+   
Sbjct: 254 SRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTF 313

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI---LCAALIDMYAKCGSIDLAMQVFH- 198
           V++LSACA  G ++ G  VY  + K    +  +   +C  ++DM  + G +D A +  H 
Sbjct: 314 VAVLSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVC--MVDMLGRAGFLDEAYKFIHQ 371

Query: 199 --SYGDKDVSAYTSAIFG 214
             + G     A  +A+ G
Sbjct: 372 LDATGKATAPALWTAMLG 389



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 77/167 (46%), Gaps = 10/167 (5%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++      +V +  +LI  YS CG V  AR VFD+  + +V +W +MI+ Y  +G   + 
Sbjct: 234 IISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQA 293

Query: 62  LKLFDKM-----PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLI 111
           ++LF+KM     P  N+V++ ++L      G V++   V+ +M K       +   V ++
Sbjct: 294 VELFNKMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMV 353

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
               + G   EA     ++ +       A+  ++L AC      D G
Sbjct: 354 DMLGRAGFLDEAYKFIHQLDATGKATAPALWTAMLGACKMHRNYDLG 400


>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 198/548 (36%), Positives = 307/548 (56%), Gaps = 39/548 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +++SF Y   + N+ I  Y+ CG +  A  VF   +   V SWN++I G+ +NG+ ++ L
Sbjct: 443 LRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKAL 502

Query: 63  KLFDKMPQ----RNDVSWNSILGGLVRFGSVDDACRV----------------------- 95
             + +M +     +D S  S+L    R G +     +                       
Sbjct: 503 DFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLY 562

Query: 96  ------------FNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
                       F +M  ++ V W  ++SG++QN  P EAL+LFR+M S  LEP+   + 
Sbjct: 563 FHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIA 622

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           S+L AC+QL AL  G  V+ +  K  +  D+ +  +L+DMYAK G +  + ++F+    K
Sbjct: 623 SILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGK 682

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           +V+++   I G  ++G   +A ELFE+MK     PD  +++ VL AC H G V +G  Y 
Sbjct: 683 EVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYL 742

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
             M  ++ ++PEL+HYAC++D+LGRAG L EA NFI  MP +PD  IW +LL +   + +
Sbjct: 743 AQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEEPDAKIWSSLLSSSITYVD 802

Query: 324 AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE 383
            EMG++    L+  + N    YILLSN+Y    K +    VR+ M+   +++  GCS IE
Sbjct: 803 LEMGEKFAEKLLALEANKADSYILLSNLYATAGKWDVVRMVRQKMKDLSLQKDVGCSWIE 862

Query: 384 LDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYH 443
           L G V+ F+AG+ S+  + EI + W  + K+I   GY  +   V+ ++EE EK  ++  H
Sbjct: 863 LRGKVYSFIAGENSNPSSDEIRKMWNRLEKQIVEIGYTPDCSCVLHELEEVEKRKILKGH 922

Query: 444 SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
           SEK+A+ FG + TK G+ +RI KN+RIC DCH+A K +SK  KR+I IRD K +HHF+ G
Sbjct: 923 SEKVAICFGFLNTKEGTTLRISKNLRICRDCHNAAKYISKAAKREIVIRDNKRFHHFKKG 982

Query: 504 SCSCLEYW 511
            CSC +YW
Sbjct: 983 ICSCGDYW 990



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 107/390 (27%), Positives = 173/390 (44%), Gaps = 46/390 (11%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           M VK    +++ V N+LI  YS CG + +A  +F + ++  VVSWNSMI  Y R G + E
Sbjct: 338 MAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFE 397

Query: 61  GLKLFDKM------------------P-----------------------QRNDVSWNSI 79
              L  KM                  P                       Q  ++  N+ 
Sbjct: 398 TFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAF 457

Query: 80  LGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS 139
           +    + GS+  A  VF  M  +S+ SW  +I G AQNG P +AL  + EM  L + P+ 
Sbjct: 458 IAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDD 517

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
             +VSLL AC +LG L YG  ++ ++ +  ++++S +  +L+ +Y  C         F  
Sbjct: 518 FSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFER 577

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
            GDK+   + + + G + N    EA  LF  M S G+ PD I+  ++L ACS L  +  G
Sbjct: 578 MGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLG 637

Query: 260 FYYFHSMFDVHGIKPELDHYAC-MVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
               H  F +     E +  AC ++D+  ++G L  ++     +  K +   W  ++   
Sbjct: 638 -KEVHC-FALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGK-EVASWNVMITGF 694

Query: 319 RVHRNAEMGQRIGNMLIESDQNHDGRYILL 348
            VH        +   +  SD+  D R+  L
Sbjct: 695 GVHGQGNKAVELFEDMKRSDKQPD-RFTFL 723



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 138/302 (45%), Gaps = 43/302 (14%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           M VK     D+FV N++I  Y  CG + +A  +FD+  + +++SWNS+I G+  NG  LE
Sbjct: 235 MAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLE 294

Query: 61  GLKLFDKMPQRND-----------------------------------------VSWNSI 79
             + F  + +  D                                         +  N++
Sbjct: 295 AYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNAL 354

Query: 80  LGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE--MQSLDLEP 137
           +    + G + +A  +F ++  +S+VSW  +I  +++ G   E   L R+  M+   +E 
Sbjct: 355 IDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEV 414

Query: 138 NSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVF 197
           N   +++LL AC +   L     ++ Y  +   +   ++  A I  YAKCGS+  A  VF
Sbjct: 415 NEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVF 474

Query: 198 HSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVE 257
                K VS++ + I G A NG  I+A + +  M   GI PD  S +++L AC  LG ++
Sbjct: 475 FGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQ 534

Query: 258 KG 259
            G
Sbjct: 535 YG 536



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 145/294 (49%), Gaps = 44/294 (14%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + V + F+ D  +   LI  YS+CG   ++R VFD   + ++  WN++++GYVRN    E
Sbjct: 133 LCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDE 192

Query: 61  GLKLFDKMP-----QRNDVSW-----------------------------------NSIL 80
            +  F ++      Q ++ ++                                   N+++
Sbjct: 193 AIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMI 252

Query: 81  GGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM-QSLD-LEPN 138
               + G +D+A  +F++MP+++L+SW  LI GF++NG   EA   FR + +S D L P+
Sbjct: 253 ALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPD 312

Query: 139 SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH 198
            A +V+LL  C+  G +D G  ++    K  +  + ++C ALIDMY+KCG +  A  +F 
Sbjct: 313 VATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFR 372

Query: 199 SYGDKDVSAYTSAIFGLAMNGHSIEAFELFEN--MKSKGISPDSISYIAVLSAC 250
              +K V ++ S I   +  G   E F+L     M+ + +  + ++ + +L AC
Sbjct: 373 KIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPAC 426



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 114/226 (50%), Gaps = 5/226 (2%)

Query: 95  VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL-DLEPNSAILVSLLSACAQLG 153
           VF+++  ++L  W  L+SG+ +N    EA+  F E+ S+ + +P++     L+ AC    
Sbjct: 165 VFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKC 224

Query: 154 ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIF 213
            +  G  V+    K  + +D  +  A+I +Y KCG +D A+++F    ++++ ++ S I 
Sbjct: 225 DIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIR 284

Query: 214 GLAMNGHSIEAFELFENM--KSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG 271
           G + NG  +EA+  F ++     G+ PD  + + +L  CS  G V+ G    H M    G
Sbjct: 285 GFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGM-VIHGMAVKLG 343

Query: 272 IKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
           +  EL     ++D+  + G L EA      +  K   V W +++GA
Sbjct: 344 LVHELMVCNALIDMYSKCGCLSEAAILFRKIENK-SVVSWNSMIGA 388


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 190/550 (34%), Positives = 312/550 (56%), Gaps = 40/550 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VVK +F ++VFV N+L+ FYS   RV +A  +F E  ++D +S+N ++  Y  NG + E 
Sbjct: 325 VVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKES 384

Query: 62  LKLFDKMP-----QRN----------------DVS------------------WNSILGG 82
           L+LF ++      +RN                D+                    NS++  
Sbjct: 385 LELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDM 444

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G   +A R+F+ +  +S V W  +IS + Q G  ++ L LF EMQ   +  ++A  
Sbjct: 445 YAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATY 504

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S++ ACA L +L  G  ++S+I       +    +AL+DMYAKCGSI  A+Q+F     
Sbjct: 505 ASIVRACASLASLTLGKQLHSHIIGSGYISNVFSGSALVDMYAKCGSIKDALQMFQEMPV 564

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           ++  ++ + I   A NG       LFE M   G+ PDS+S +++L ACSH G VE+G  Y
Sbjct: 565 RNSVSWNALISAYAQNGDGDCTLRLFEEMVRSGLQPDSVSLLSILCACSHCGLVEEGLQY 624

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F SM  ++ + P+ +HYA  +D+L R G  +EAE  +A MP +PD ++W ++L +C +H+
Sbjct: 625 FDSMTRIYKLVPKKEHYASTIDMLCRGGRFDEAEKLMAQMPFEPDEIMWSSVLNSCGIHK 684

Query: 323 NAEMGQRIGNMLIESDQNHDGR-YILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
           N E+ ++  N L       D   Y+ +SNIY    + +N  +V+K MR+R +K+ P  S 
Sbjct: 685 NQELAKKAANQLFNMKVLRDAAPYVTMSNIYAAAGEWDNVGKVKKAMRERGVKKVPAYSW 744

Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIG 441
           +E+    H F A D++H + +EI +  +E+ +K+   GY  ++   + +++EE K   + 
Sbjct: 745 VEIKHKTHVFTANDKTHPQMREIMKKLDELEEKMVKKGYKPDSSCALHNVDEEVKVESLK 804

Query: 442 YHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
           YHSE++A+AF LI T  GS I ++KN+R C+DCH+A+K++SK+ +R+I++RD   +HHF 
Sbjct: 805 YHSERIAIAFALISTPEGSPILVMKNLRACTDCHAAIKVISKIVRREITVRDSSRFHHFR 864

Query: 502 DGSCSCLEYW 511
           DG C+C +YW
Sbjct: 865 DGFCTCRDYW 874



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 121/214 (56%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N ++  +++ G++    KLFD+MP +N  S N+++ G ++ G++ +A  +F+ M +R+ V
Sbjct: 105 NFLVKSFLQRGDLNGARKLFDEMPHKNIFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAV 164

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           +W +LI G+AQN + +EA  LF EM    ++P+   L +LLS   +  +++    V+S++
Sbjct: 165 TWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHV 224

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
            K       ++  +L+D Y K  S+ LA Q+F+   ++D   + + + G +  G + EA 
Sbjct: 225 IKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALLTGYSKEGFNREAI 284

Query: 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
            LF  M+  G  P   ++ A+L+A   L  +E G
Sbjct: 285 NLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFG 318



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 155/347 (44%), Gaps = 41/347 (11%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           ++F  N++I  Y   G + +AR +FD       V+W  +I GY +N +  E   LF +M 
Sbjct: 131 NIFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMG 190

Query: 70  QR----NDVSWNSILGGLVRFGSVDD---------------------------------- 91
           +     + VS  ++L G   F SV++                                  
Sbjct: 191 RHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLG 250

Query: 92  -ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
            A ++FN +P+R  V++  L++G+++ G  +EA+ LF +MQ +   P      ++L+A  
Sbjct: 251 LAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGI 310

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
           QL  +++G  V+ ++ K     +  +  AL+D Y+K   +  A ++F+   + D  +Y  
Sbjct: 311 QLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNV 370

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            +   A NG   E+ ELF+ ++  G    +  +  +LS  +    ++ G    HS   V 
Sbjct: 371 LVTCYAWNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIG-RQIHSQTIVT 429

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
               E+     +VD+  + G   EA    + + ++  +V W  ++ +
Sbjct: 430 DAISEILVGNSLVDMYAKCGEFGEANRIFSDLAIQ-SSVPWTAMISS 475


>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Glycine max]
          Length = 882

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 202/547 (36%), Positives = 303/547 (55%), Gaps = 42/547 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGY--------- 52
           V++  F  D  + NSLI  YS  G + +A  VF  ++  D+VSW +MI+GY         
Sbjct: 334 VLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYENCLMPQKA 393

Query: 53  VRNGEILE--------------------------GLKLFDKMPQRNDVSW----NSILGG 82
           +   +++E                          G+ L +   Q+  VS+    NS++  
Sbjct: 394 LETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYSIVANSLIDM 453

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             +   +D A  +F+   ++++VSW  +I G   N R  EAL  FREM    L+PNS  L
Sbjct: 454 YAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREMIR-RLKPNSVTL 512

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           V +LSACA++GAL  G  ++++  +  +  D  +  A++DMY +CG ++ A + F S  D
Sbjct: 513 VCVLSACARIGALTCGKEIHAHALRTGVSFDGFMPNAILDMYVRCGRMEYAWKQFFSV-D 571

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
            +V+++   + G A  G    A ELF+ M    +SP+ +++I++L ACS  G V +G  Y
Sbjct: 572 HEVTSWNILLTGYAERGKGAHATELFQRMVESNVSPNEVTFISILCACSRSGMVAEGLEY 631

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F+SM   + I P L HYAC+VDLLGR+G LEEA  FI  MPMKPD  +WG LL +CR+H 
Sbjct: 632 FNSMKYKYSIMPNLKHYACVVDLLGRSGKLEEAYEFIQKMPMKPDPAVWGALLNSCRIHH 691

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           + E+G+     + + D    G YILLSN+Y +  K +   EVRK MR+  +   PGCS +
Sbjct: 692 HVELGELAAENIFQDDTTSVGYYILLSNLYADNGKWDKVAEVRKMMRQNGLIVDPGCSWV 751

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E+ G VH FL+ D  H + +EI    E   KK+K  G      S M DI E  K  +   
Sbjct: 752 EVKGTVHAFLSSDNFHPQIKEINALLERFYKKMKEAGVEGPESSHM-DIMEASKADIFCG 810

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSE+LA+ FGLI + PG  I + KN+ +C  CH+ +K +S+  +R+IS+RD + +HHF+ 
Sbjct: 811 HSERLAIVFGLINSGPGMPIWVTKNLYMCQSCHNIVKFISREVRREISVRDAEQFHHFKG 870

Query: 503 GSCSCLE 509
           G CSC +
Sbjct: 871 GICSCTD 877



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 99/297 (33%), Positives = 155/297 (52%), Gaps = 40/297 (13%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V++  F  DV V N+LI  Y  CG V  AR VFD+  + D +SWN+MI+GY  NG  LEG
Sbjct: 233 VIRYGFESDVDVVNALITMYVKCGDVNTARLVFDKMPNRDRISWNAMISGYFENGVCLEG 292

Query: 62  LKLFDKMPQ---------------------------------------RNDVSWNSILGG 82
           L+LF  M +                                       R+    NS++  
Sbjct: 293 LRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIHGYVLRTEFGRDPSIHNSLIPM 352

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
               G +++A  VF++   R LVSW  +ISG+     P++AL  ++ M++  + P+   +
Sbjct: 353 YSSVGLIEEAETVFSRTECRDLVSWTAMISGYENCLMPQKALETYKMMEAEGIMPDEITI 412

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
             +LSAC+ L  LD G  ++   ++K +   SI+  +LIDMYAKC  ID A+++FHS  +
Sbjct: 413 AIVLSACSCLCNLDMGMNLHEVAKQKGLVSYSIVANSLIDMYAKCKCIDKALEIFHSTLE 472

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
           K++ ++TS I GL +N    EA   F  M  + + P+S++ + VLSAC+ +G +  G
Sbjct: 473 KNIVSWTSIILGLRINNRCFEALFFFREMIRR-LKPNSVTLVCVLSACARIGALTCG 528



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 163/362 (45%), Gaps = 51/362 (14%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDK------- 67
           N+L+  +   G + DA +VF   +  ++ SWN ++ GY + G   E L L+ +       
Sbjct: 145 NALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVK 204

Query: 68  ---------------MPQ----------------RNDVS-WNSILGGLVRFGSVDDACRV 95
                          MP                  +DV   N+++   V+ G V+ A  V
Sbjct: 205 PDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLV 264

Query: 96  FNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGAL 155
           F++MP R  +SW  +ISG+ +NG   E L LF  M    ++P+   + S+++AC  LG  
Sbjct: 265 FDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDD 324

Query: 156 DYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGL 215
             G  ++ Y+ +     D  +  +LI MY+  G I+ A  VF     +D+ ++T+ I G 
Sbjct: 325 RLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGY 384

Query: 216 AMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE 275
                  +A E ++ M+++GI PD I+   VLSACS L  ++ G    H +    G+   
Sbjct: 385 ENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGM-NLHEVAKQKGLVSY 443

Query: 276 LDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLI 335
                 ++D+  +   +++A     S  ++ + V W +++          +G RI N   
Sbjct: 444 SIVANSLIDMYAKCKCIDKALEIFHST-LEKNIVSWTSII----------LGLRINNRCF 492

Query: 336 ES 337
           E+
Sbjct: 493 EA 494


>gi|297848224|ref|XP_002891993.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337835|gb|EFH68252.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 950

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 195/533 (36%), Positives = 298/533 (55%), Gaps = 32/533 (6%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DV    ++I      GRV +AR +FDE  + +V++W +MI GY +N  +    KLF+ MP
Sbjct: 171 DVVASTNMIGGLCREGRVDEAREIFDEMRERNVITWTTMITGYGQNKRVDVARKLFEVMP 230

Query: 70  QRNDVSWNSILGGLVRFGSVDDA--------------C-----------------RVFNQ 98
           ++ +VSW S+L G    G ++DA              C                 RVF+Q
Sbjct: 231 EKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVALGEVGEIVKARRVFDQ 290

Query: 99  MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
           M  R   +W  +I  + + G   EAL LF +MQ   + P+   L+S+LS CA L +L YG
Sbjct: 291 MEDRDNATWRGMIKAYERKGFELEALELFAQMQRQGVRPSFPSLISILSVCATLASLQYG 350

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
             V++++ +     D  + + L+ MY KCG +  A  VF  +  KD+  + S I G A +
Sbjct: 351 RQVHAHLVRCQFDGDVYVASVLMTMYVKCGELVKAKLVFDRFPSKDIIMWNSIISGYASH 410

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDH 278
           G   EA ++F  M   G  P+ ++ IA+L+ACS+ G +E+G   F SM     + P ++H
Sbjct: 411 GLGEEALKVFHEMPLSGTMPNKVTLIAILTACSYGGKLEEGLEIFESMESKFCVTPTVEH 470

Query: 279 YACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338
           Y+C VD+LGRAG +++A   I SM +KPD  +WG LLGAC+ H   ++ +     L E +
Sbjct: 471 YSCTVDMLGRAGKVDKAMELINSMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFEIE 530

Query: 339 QNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGD-RS 397
             + G YILLS+I     K  +  E+RK MR + + + PGCS IE+   VH F  G  R+
Sbjct: 531 PENAGPYILLSSINASRSKWGDVAEMRKNMRTKNVSKFPGCSWIEVGKKVHMFTRGGIRN 590

Query: 398 HEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTK 457
           H +   I    E+    ++  GY+ +   V+ D++EEEK   +  HSE+LA+A+GL+   
Sbjct: 591 HPEQAMILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKLP 650

Query: 458 PGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEY 510
            G  IR++KN+R+C DCH+A+KL+SKV +R+I +RD   +HHF +G CSC +Y
Sbjct: 651 EGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNGECSCRDY 703



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 163/369 (44%), Gaps = 72/369 (19%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRN------------------- 55
           NS++  Y   G  R+AR +FDE  + ++VSWN +++GY++N                   
Sbjct: 52  NSIVSGYFANGLPREARQMFDEMPERNIVSWNGLVSGYIKNRMIEEARNVFEIMPERNVV 111

Query: 56  ------------GEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRS 103
                       G ++E   LF +MP+RN+VSW  + GGL+  G +DDA ++++ MP + 
Sbjct: 112 SWTAMVKGYVQEGMVVEAELLFWRMPERNEVSWTVMFGGLIDGGRIDDARKLYDMMPGKD 171

Query: 104 LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYS 163
           +V+   +I G  + GR  EA  +F EM+    E N     ++++   Q   +D    ++ 
Sbjct: 172 VVASTNMIGGLCREGRVDEAREIFDEMR----ERNVITWTTMITGYGQNKRVDVARKLFE 227

Query: 164 YIQKKC-IKLDSIL--------------------------CAALIDMYAKCGSIDLAMQV 196
            + +K  +   S+L                          C A+I    + G I  A +V
Sbjct: 228 VMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVALGEVGEIVKARRV 287

Query: 197 FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWV 256
           F    D+D + +   I      G  +EA ELF  M+ +G+ P   S I++LS C+ L  +
Sbjct: 288 FDQMEDRDNATWRGMIKAYERKGFELEALELFAQMQRQGVRPSFPSLISILSVCATLASL 347

Query: 257 EKGFYYFHSMFDVHGIKPELDH----YACMVDLLGRAGLLEEAENFIASMPMKPDNVIWG 312
           + G          H ++ + D      + ++ +  + G L +A+      P K D ++W 
Sbjct: 348 QYG-----RQVHAHLVRCQFDGDVYVASVLMTMYVKCGELVKAKLVFDRFPSK-DIIMWN 401

Query: 313 TLLGACRVH 321
           +++     H
Sbjct: 402 SIISGYASH 410



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 151/320 (47%), Gaps = 23/320 (7%)

Query: 1   MVVKNSFAYDVFVKNSL-IQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEIL 59
           +++  +++    V NS  I   S  G++ +AR  FD      + SWNS+++GY  NG   
Sbjct: 6   LILHRAYSTSTGVNNSFEISRLSRIGQINEARKFFDSLRYKAIGSWNSIVSGYFANGLPR 65

Query: 60  EGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGR 119
           E  ++FD+MP+RN VSWN ++ G ++   +++A  VF  MP+R++VSW  ++ G+ Q G 
Sbjct: 66  EARQMFDEMPERNIVSWNGLVSGYIKNRMIEEARNVFEIMPERNVVSWTAMVKGYVQEGM 125

Query: 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
             EA  LF  M     E N      +       G +D    +Y  +  K    D +    
Sbjct: 126 VVEAELLFWRMP----ERNEVSWTVMFGGLIDGGRIDDARKLYDMMPGK----DVVASTN 177

Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
           +I    + G +D A ++F    +++V  +T+ I G   N     A +LFE M  K     
Sbjct: 178 MIGGLCREGRVDEAREIFDEMRERNVITWTTMITGYGQNKRVDVARKLFEVMPEK----T 233

Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYAC--MVDLLGRAGLLEEAEN 297
            +S+ ++L   +  G +E         F+V  +KP +   AC  M+  LG  G + +A  
Sbjct: 234 EVSWTSMLLGYTLSGRIEDA----EEFFEVMPMKPVI---ACNAMIVALGEVGEIVKARR 286

Query: 298 FIASMPMKPDNVIWGTLLGA 317
               M  + DN  W  ++ A
Sbjct: 287 VFDQMEDR-DNATWRGMIKA 305



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 82/164 (50%), Gaps = 12/164 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +V+  F  DV+V + L+  Y  CG +  A+ VFD     D++ WNS+I+GY  +G   E 
Sbjct: 357 LVRCQFDGDVYVASVLMTMYVKCGELVKAKLVFDRFPSKDIIMWNSIISGYASHGLGEEA 416

Query: 62  LKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVV-----LIS 112
           LK+F +MP      N V+  +IL      G +++   +F  M  +  V+  V      + 
Sbjct: 417 LKVFHEMPLSGTMPNKVTLIAILTACSYGGKLEEGLEIFESMESKFCVTPTVEHYSCTVD 476

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALD 156
              + G+  +A+ L   + S+ ++P++ +  +LL AC     LD
Sbjct: 477 MLGRAGKVDKAMEL---INSMTIKPDATVWGALLGACKTHSRLD 517


>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 207/557 (37%), Positives = 316/557 (56%), Gaps = 57/557 (10%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRN-GEILEGLKLFDKMP 69
           +F+   ++Q  S    V  A  VFD  ++     WN++I     +     E   L+ KM 
Sbjct: 74  LFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKML 133

Query: 70  QRNDVSWNS------------ILG------------------------GLVRF----GSV 89
           +R + S +             I G                        GL+      G +
Sbjct: 134 ERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCL 193

Query: 90  DDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
           D A +VF++MP+RSLVSW  +I    + G    AL LFREMQ    EP+   + S+LSAC
Sbjct: 194 DLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQR-SFEPDGYTMQSVLSAC 252

Query: 150 AQLGALDYGNWVYSYIQKKC---IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
           A LG+L  G W ++++ +KC   + +D ++  +LI+MY KCGS+ +A QVF     +D++
Sbjct: 253 AGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLA 312

Query: 207 AYTSAIFGLAMNGHSIEAFELFENM--KSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           ++ + I G A +G + EA   F+ M  K + + P+S++++ +L AC+H G+V KG  YF 
Sbjct: 313 SWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFD 372

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC-RVHRN 323
            M   + I+P L+HY C+VDL+ RAG + EA + + SMPMKPD VIW +LL AC +   +
Sbjct: 373 MMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGAS 432

Query: 324 AEMGQRIGNMLI-------ESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRA 376
            E+ + I   +I        S+ N  G Y+LLS +Y    +  +   VRK M +  I++ 
Sbjct: 433 VELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKE 492

Query: 377 PGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVE-TRSVMFDIEEE- 434
           PGCS IE++G+ HEF AGD SH +T++IYQ  + I  ++++ GY  + +++ + D   + 
Sbjct: 493 PGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDG 552

Query: 435 EKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDR 494
            KE  +  HSE+LA+AFGLI   P + IRI KN+R+C+DCH   KL+SKVF  +I +RDR
Sbjct: 553 SKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDR 612

Query: 495 KHYHHFEDGSCSCLEYW 511
             +HHF+DGSCSCL+YW
Sbjct: 613 VRFHHFKDGSCSCLDYW 629


>gi|125539857|gb|EAY86252.1| hypothetical protein OsI_07623 [Oryza sativa Indica Group]
          Length = 629

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 198/490 (40%), Positives = 295/490 (60%), Gaps = 38/490 (7%)

Query: 5   NSFAYDVFVKNSLIQFYSVCGRVRDARWV-FDESDDLDVVSWNSMINGYVRNGEILEGLK 63
            + A+ V V NSL++ Y   G +  AR V +     LDVVSWN+M++GY + G++    +
Sbjct: 108 GALAHPV-VTNSLLKLYCSLGLIDRARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAARE 166

Query: 64  LFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEA 123
           +F +MP+RN VSW++++   VR G   +A  VF++M                        
Sbjct: 167 VFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRM------------------------ 202

Query: 124 LALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCI---KLDSILCAAL 180
               RE    +  P+  +LVS+L ACA LGA++ G WV+ Y++       + + +L  AL
Sbjct: 203 ---MRE----EFRPDVVVLVSVLKACAHLGAVERGRWVHRYLETGSFGGRRGNLMLETAL 255

Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           +DMY KCG ++ A QVF     +DV  + + I GLAMNG+   A ELF  M  KG  P+ 
Sbjct: 256 VDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMIGGLAMNGYGERALELFRRMLQKGFMPNE 315

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
            ++IAVL AC+H G V++G   F SM D +GIKP+ +HY C+ DLLGRAG +EEAE  + 
Sbjct: 316 STFIAVLCACTHTGRVDEGKRVFKSMQD-YGIKPQREHYGCLADLLGRAGNVEEAEALLL 374

Query: 301 SMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGEN 360
            MPM+P    WG L+ +C++H +  +G+R+G  LIE +    GRY++L N+Y    + E 
Sbjct: 375 DMPMEPHASQWGALMSSCQMHNDINVGERVGKRLIELEPYDGGRYVVLFNLYAVNGRWEE 434

Query: 361 AEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGY 420
           A  +R+ M  R  K+  G S IEL+G+VHEF++GD  H  T++IY   E+I ++++  GY
Sbjct: 435 ARTIRQMMEDRGAKKETGLSFIELNGLVHEFISGDTRHPLTRKIYALLEDIERRLQLIGY 494

Query: 421 NVETRSVMFDI-EEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMK 479
             +T  V+ D+ +EE+K   + YHSE+LALAFG++    G  IRIVKN+R+C DCH   K
Sbjct: 495 VKDTSQVIMDMDDEEDKGIALSYHSERLALAFGILNIPQGVPIRIVKNLRVCRDCHVHSK 554

Query: 480 LVSKVFKRKI 489
           LVSK+++R+I
Sbjct: 555 LVSKLYEREI 564


>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
          Length = 563

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 190/456 (41%), Positives = 287/456 (62%), Gaps = 6/456 (1%)

Query: 60  EGLKLFDKMPQRNDVSWNSILGGLVRFGS----VDDACRVFNQMPKRSLVSWVVLISGFA 115
           EG ++  ++ +    S   +   LV F S    +  A +VF+++ +R+LV W  ++SG+A
Sbjct: 110 EGKQIHAQILRSGFSSSPYVQSSLVNFYSKCEEITIARKVFDEITERNLVCWSAMVSGYA 169

Query: 116 QNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI 175
           + G   EAL +FREMQ + +EP+   LV +LSACA +GALD G WV++YI+K+ I +D  
Sbjct: 170 RLGMINEALIMFREMQVVGIEPDEVSLVGVLSACAMVGALDIGKWVHAYIKKRMIHVDLE 229

Query: 176 LCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG 235
           L  ALI+MYAKCG I+ A ++F     KD  A++S I GLA++G + +A  +F  M+   
Sbjct: 230 LNTALINMYAKCGCIEKAREIFDEMRVKDSKAWSSMIVGLAIHGLAEDALNVFSRMEEAQ 289

Query: 236 ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA 295
             P+ +++I +LSAC+H G V  G  Y+ SM ++ GI+P ++HY CMVDLL R GL++EA
Sbjct: 290 AKPNHVTFIGILSACAHGGLVSDGKRYWSSMLEL-GIEPSMEHYGCMVDLLCRGGLIDEA 348

Query: 296 ENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVET 355
            +F   +P  PD VIW TLL A   +R  +  + +   L+E +      YI+L+N+Y   
Sbjct: 349 YDFALIIP-TPDPVIWRTLLVAYTKNRMLQKAEMVAGKLLELEPWKAENYIILANLYASV 407

Query: 356 LKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKI 415
            + E    VRK M++  IK  PGC+ IE+DG VH F+ GD SH + +EI +   ++  KI
Sbjct: 408 SQLEKVSHVRKMMKENGIKALPGCTSIEVDGFVHNFVTGDWSHPEAEEIKKTLRDVALKI 467

Query: 416 KNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCH 475
              GY      V+  + +EEKE V+  HSE+LA+A+GL+ TK  + IRIVKN+R+C DCH
Sbjct: 468 LISGYKPFVSVVLHLVNDEEKENVLYEHSERLAIAYGLMKTKAPATIRIVKNLRVCGDCH 527

Query: 476 SAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
              K++SK++ R+I +RDR  +H F +G+CSC +YW
Sbjct: 528 EVTKIISKIYDREIIVRDRVRFHKFVNGTCSCKDYW 563



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 139/269 (51%), Gaps = 8/269 (2%)

Query: 63  KLFDKMPQRNDVSW--NSIL--GGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNG 118
           ++   +P  + VS+  + IL    L  FG+ D A ++F+Q+P   + ++  +I G     
Sbjct: 10  RILTHVPPISSVSFLISKILSFAALSPFGNFDYARKIFSQIPNPGIFAYNSVIRGCLYTK 69

Query: 119 RP-KEALALFREMQSLDLE-PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSIL 176
            P KE + LF++M       PN+  +  +L AC+ + AL+ G  +++ I +        +
Sbjct: 70  IPSKEPIHLFKDMVGKGYPNPNTFTMAFVLKACSIIMALEEGKQIHAQILRSGFSSSPYV 129

Query: 177 CAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGI 236
            ++L++ Y+KC  I +A +VF    ++++  +++ + G A  G   EA  +F  M+  GI
Sbjct: 130 QSSLVNFYSKCEEITIARKVFDEITERNLVCWSAMVSGYARLGMINEALIMFREMQVVGI 189

Query: 237 SPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAE 296
            PD +S + VLSAC+ +G ++ G  + H+      I  +L+    ++++  + G +E+A 
Sbjct: 190 EPDEVSLVGVLSACAMVGALDIG-KWVHAYIKKRMIHVDLELNTALINMYAKCGCIEKAR 248

Query: 297 NFIASMPMKPDNVIWGTLLGACRVHRNAE 325
                M +K D+  W +++    +H  AE
Sbjct: 249 EIFDEMRVK-DSKAWSSMIVGLAIHGLAE 276



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 107/231 (46%), Gaps = 39/231 (16%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++++ F+   +V++SL+ FYS C  +  AR VFDE  + ++V W++M++GY R G I E 
Sbjct: 118 ILRSGFSSSPYVQSSLVNFYSKCEEITIARKVFDEITERNLVCWSAMVSGYARLGMINEA 177

Query: 62  LKLFDKMP----QRNDVSWNSILGGLVRFGSVD--------------------------- 90
           L +F +M     + ++VS   +L      G++D                           
Sbjct: 178 LIMFREMQVVGIEPDEVSLVGVLSACAMVGALDIGKWVHAYIKKRMIHVDLELNTALINM 237

Query: 91  --------DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
                    A  +F++M  +   +W  +I G A +G  ++AL +F  M+    +PN    
Sbjct: 238 YAKCGCIEKAREIFDEMRVKDSKAWSSMIVGLAIHGLAEDALNVFSRMEEAQAKPNHVTF 297

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLA 193
           + +LSACA  G +  G   +S + +  I+        ++D+  + G ID A
Sbjct: 298 IGILSACAHGGLVSDGKRYWSSMLELGIEPSMEHYGCMVDLLCRGGLIDEA 348


>gi|115470713|ref|NP_001058955.1| Os07g0163900 [Oryza sativa Japonica Group]
 gi|113610491|dbj|BAF20869.1| Os07g0163900 [Oryza sativa Japonica Group]
          Length = 664

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 192/476 (40%), Positives = 282/476 (59%), Gaps = 32/476 (6%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + VK   A D+FV+N+L+ FY V G V   R                             
Sbjct: 171 LAVKAGAAGDLFVRNALVHFYGVSGDVGAMR----------------------------- 201

Query: 61  GLKLFDKMPQRNDV-SWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGR 119
             ++FD++P+  DV +WN +L G VR G +  A  VF++MP R  +SW  L+ G+ +   
Sbjct: 202 --RVFDELPRVRDVLTWNEVLAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEE 259

Query: 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
            + AL +FR M    + PN A +V+ LSA A+LG L++G +V++ +Q+  + +   + AA
Sbjct: 260 LEVALGVFRNMVEQGVRPNQAAVVTALSAAARLGLLEHGKFVHNVVQRSGMPVCMNVGAA 319

Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
           L+DMYAKCG + +A +VF     +DV A+ + I GLA +G   +A ELFE   S+G+SP 
Sbjct: 320 LVDMYAKCGCVAVAREVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPT 379

Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI 299
           +++++ VL+ CS  G V +G  YF  + + + I+PE++HY CMVDLLGRAGL+ EA   I
Sbjct: 380 NVTFVGVLNGCSRSGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELI 439

Query: 300 ASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGE 359
             M + PD V+WGT+L +C+ H   ++G  +GN LIE D  H G Y+LLS IY +  K +
Sbjct: 440 EGMHIAPDPVLWGTILSSCKTHGLVDLGVSVGNKLIELDPTHSGYYVLLSGIYAKANKWD 499

Query: 360 NAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYG 419
              EVRK M  R   ++ G SL+E  G VH+FL GD  H+ + +IY   + I K++   G
Sbjct: 500 EVREVRKLMSSRGTNKSAGWSLMEAHGKVHKFLVGDTYHKDSVQIYDTLDMINKRLTEAG 559

Query: 420 YNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCH 475
           Y  +  SV+ DI EEEK   +  HSE+LA+A+G I  + GS IRIVKN+R+C DCH
Sbjct: 560 YVPDVSSVLHDIGEEEKVHAVKVHSERLAIAYGFIVLEAGSPIRIVKNLRVCGDCH 615


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 191/520 (36%), Positives = 297/520 (57%), Gaps = 39/520 (7%)

Query: 31  RWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM----PQRNDVSWNSIL-----G 81
           R VFDE  + DVVSWN+++ G   +G   E L L  +M     + +  + +S+L     G
Sbjct: 127 RKVFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEG 186

Query: 82  GLVRFG------------------------------SVDDACRVFNQMPKRSLVSWVVLI 111
             VR G                                D + +VF+ +P R  + W  ++
Sbjct: 187 ADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSML 246

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK 171
           +G AQNG   EAL LFR M    ++P      SL+ AC  L +L  G  +++Y+ +    
Sbjct: 247 AGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFD 306

Query: 172 LDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM 231
            +  + ++LIDMY KCG++ +A ++F      D+ ++T+ I G A++G + EA  LF+ M
Sbjct: 307 GNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRM 366

Query: 232 KSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGL 291
           +   + P+ I+++AVL+ACSH G V+KG+ YF+SM D +GI P L+H+A + D LGR G 
Sbjct: 367 ELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTLGRPGK 426

Query: 292 LEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNI 351
           LEEA NFI+ M +KP   +W TLL AC+VH+N  + + +   + + +    G +I+LSN 
Sbjct: 427 LEEAYNFISGMKIKPTASVWSTLLRACKVHKNTVLAEEVAKKIFDLEPRSMGSHIILSNT 486

Query: 352 YVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEI 411
           Y  + +   A  +RK+MRK+ +++ P CS IE+    H F+A D+SH   + I       
Sbjct: 487 YSSSGRWNEAAHLRKSMRKKGMQKEPACSWIEVKNKQHVFVAHDKSHPWYERIIDALNVF 546

Query: 412 VKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRIC 471
            +++   GY   T  V  DIEEE+K +V+  HSEKLA+ FG+I T PG+ IR++KN+R+C
Sbjct: 547 SEQMVRQGYVPNTDDVFQDIEEEQKNSVLCGHSEKLAIVFGIISTPPGTTIRVMKNLRVC 606

Query: 472 SDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            DCH+  K +SK+  R+I +RD   +HHF+DG CSC ++W
Sbjct: 607 VDCHTVTKFISKIVGREIVMRDANRFHHFKDGICSCGDFW 646



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 40/200 (20%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
             +N F  DVFV +SLI  Y+ C R   +  VFD     D + WNSM+ G  +NG + E 
Sbjct: 199 ATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSVDEA 258

Query: 62  LKLFDKMPQRN----DVSWNSIL---------------------GGL------------- 83
           L LF +M         V+++S++                     GG              
Sbjct: 259 LGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGNVFISSSLIDM 318

Query: 84  -VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G+V  A R+F+++    +VSW  +I G A +G  +EAL LF  M+  +L+PN    
Sbjct: 319 YCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRMELGNLKPNHITF 378

Query: 143 VSLLSACAQLGALDYGNWVY 162
           +++L+AC+  G +D G W Y
Sbjct: 379 LAVLTACSHAGLVDKG-WKY 397



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 120/269 (44%), Gaps = 34/269 (12%)

Query: 58  ILEGL-KLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQ 116
           +LE + K+FD+MP+++ VSWN+                               L+ G A+
Sbjct: 122 VLESVRKVFDEMPEKDVVSWNT-------------------------------LVLGCAE 150

Query: 117 NGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSIL 176
           +GR  EAL L REM     +P+S  L S+L   A+   +  G  ++ +  +     D  +
Sbjct: 151 SGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMELHGFATRNGFHDDVFV 210

Query: 177 CAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGI 236
            ++LIDMYA C   D +++VF +   +D   + S + G A NG   EA  LF  M   GI
Sbjct: 211 GSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSVDEALGLFRRMLHSGI 270

Query: 237 SPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAE 296
            P  +++ +++ AC +L  +  G    H+     G    +   + ++D+  + G +  A 
Sbjct: 271 KPMPVTFSSLIPACGNLASLLLG-KQLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIAR 329

Query: 297 NFIASMPMKPDNVIWGTLLGACRVHRNAE 325
                +   PD V W  ++    +H  A 
Sbjct: 330 RIFDRI-QSPDIVSWTAMIMGHALHGPAR 357



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 78/154 (50%), Gaps = 6/154 (3%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V++  F  +VF+ +SLI  Y  CG V  AR +FD     D+VSW +MI G+  +G   E 
Sbjct: 300 VIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREA 359

Query: 62  LKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKR-SLVSWVVLISGFAQ 116
           L LFD+M     + N +++ ++L      G VD   + FN M     +V  +   +  A 
Sbjct: 360 LVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALAD 419

Query: 117 N-GRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
             GRP +    +  +  + ++P +++  +LL AC
Sbjct: 420 TLGRPGKLEEAYNFISGMKIKPTASVWSTLLRAC 453



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 104/244 (42%), Gaps = 22/244 (9%)

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPN-SAILVSL---LSACAQLGALDYGNWV 161
           SW   I   A  G    A+ALF  M++ D     S++L SL   L +CA LG    G  +
Sbjct: 21  SWAHQIRVAASQGDFHHAIALFLRMRASDPAAACSSVLTSLPGALKSCAALGLRALGASL 80

Query: 162 YSYIQKKCIKLDSILCAALIDMYAKCGS--------------IDLAMQVFHSYGDKDVSA 207
           ++   +     D     AL+++Y K  +              ++   +VF    +KDV +
Sbjct: 81  HALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEKDVVS 140

Query: 208 YTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMF 267
           + + + G A +G   EA  L   M   G  PDS +  +VL   +    V +G    H   
Sbjct: 141 WNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGM-ELHGFA 199

Query: 268 DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMG 327
             +G   ++   + ++D+       + +     ++P++ D ++W ++L  C   +N  + 
Sbjct: 200 TRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVR-DAILWNSMLAGCA--QNGSVD 256

Query: 328 QRIG 331
           + +G
Sbjct: 257 EALG 260


>gi|302761366|ref|XP_002964105.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
 gi|300167834|gb|EFJ34438.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
          Length = 713

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 205/556 (36%), Positives = 307/556 (55%), Gaps = 45/556 (8%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEI-- 58
           ++   +   D  V++SLI  Y  C  + +A   FD S + DVV W +MI+ Y  N     
Sbjct: 158 LIASEALEIDSHVESSLITMYGRCREIEEAERAFDRSPEKDVVCWTAMISAYAHNWRTSR 217

Query: 59  ---------LEGLKL------------FDKMPQRNDVSWNS-------------ILGGLV 84
                    LEG+KL               M  RN V+++              + G LV
Sbjct: 218 ALELVRRMDLEGIKLGLPTYVSLLDACASTMDLRNGVAFHQRAAAIGLDRSSTVVAGTLV 277

Query: 85  RF----GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
                 G VDDA RV + MP R+ VSW  +I+ +AQNG   EA+ LF+ M     EP+  
Sbjct: 278 NLYGKCGRVDDARRVLDAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCMDLEGAEPSDI 337

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI-LCAALIDMYAKCGSIDLAMQVFH- 198
            L+S++ +CA LG L  G  +++ I+       S+ L  A+I MY KCG+++LA +VF  
Sbjct: 338 TLISVVDSCAVLGTLSLGKRIHARIRSSPSFSQSLMLLNAVITMYGKCGNLELAREVFEC 397

Query: 199 -SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMK-SKGISPDSISYIAVLSACSHLGWV 256
                + V  +T+ I   A NG   EA ELF+ M    G  P+ +++++VL ACSHLG +
Sbjct: 398 VPLRTRSVVTWTAMIRAYAQNGVGEEAIELFQEMLIDGGTEPNRVTFLSVLCACSHLGQL 457

Query: 257 EKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP-MKPDNVIWGTLL 315
           E+ + +F SM    G+ P  DHY C+VDLLGRAG L EAE  +      + D V W   L
Sbjct: 458 EQAWEHFCSMGPDFGVPPAGDHYCCLVDLLGRAGRLGEAEKLLLRHKDFEADVVCWIAFL 517

Query: 316 GACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKR 375
            AC+++ + E  QR    + E +  +    +LLSN+Y    +  +   +R  M+   +K+
Sbjct: 518 SACQMNGDLERSQRAAKRVSELEPENVAGRVLLSNVYAAKGRRADVARIRNEMKSSGVKK 577

Query: 376 APGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEE 435
             G S IE++  VHEF+  D SH +  EIY   E + ++IK  GY  +T+ V+ D++EE+
Sbjct: 578 FAGRSWIEINNRVHEFMVSDVSHPRKLEIYSELERLHREIKEAGYVPDTKMVLRDVDEEK 637

Query: 436 KETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRK 495
           K  ++GYHSE+LA+A G+I T PG+ +R+VKN+R+CSDCH+A K +S++  R+I +RD  
Sbjct: 638 KVQLLGYHSERLAMALGIISTPPGTTLRVVKNLRVCSDCHAATKFISQIVGRQIIVRDTS 697

Query: 496 HYHHFEDGSCSCLEYW 511
            +HHF+DG CSC +YW
Sbjct: 698 RFHHFKDGVCSCGDYW 713



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 123/254 (48%), Gaps = 1/254 (0%)

Query: 71  RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM 130
           RN    N ++    + GS+  A   F ++   +  SW +L++ +AQNG P+ A  LF  M
Sbjct: 65  RNTFLGNVLVDAYSKHGSLHGAQLAFGRITLHNAHSWNILMAAYAQNGHPRGAATLFHWM 124

Query: 131 QSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSI 190
            S  + PN+  L + L AC     L  G  +   I  + +++DS + ++LI MY +C  I
Sbjct: 125 CSQGVRPNAVTLSTALLACTAARNLALGRKLNELIASEALEIDSHVESSLITMYGRCREI 184

Query: 191 DLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250
           + A + F    +KDV  +T+ I   A N  +  A EL   M  +GI     +Y+++L AC
Sbjct: 185 EEAERAFDRSPEKDVVCWTAMISAYAHNWRTSRALELVRRMDLEGIKLGLPTYVSLLDAC 244

Query: 251 SHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVI 310
           +    +  G  +      +   +        +V+L G+ G +++A   + +MP++  +V 
Sbjct: 245 ASTMDLRNGVAFHQRAAAIGLDRSSTVVAGTLVNLYGKCGRVDDARRVLDAMPVRT-SVS 303

Query: 311 WGTLLGACRVHRNA 324
           W  ++ A   + NA
Sbjct: 304 WTAMIAAYAQNGNA 317



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 81/184 (44%), Gaps = 6/184 (3%)

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
           Q   LD    +++ I  + +  ++ L   L+D Y+K GS+  A   F      +  ++  
Sbjct: 44  QCRGLDEVRKLHAQIAARKLDRNTFLGNVLVDAYSKHGSLHGAQLAFGRITLHNAHSWNI 103

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            +   A NGH   A  LF  M S+G+ P++++    L AC+    +  G    + +    
Sbjct: 104 LMAAYAQNGHPRGAATLFHWMCSQGVRPNAVTLSTALLACTAARNLALG-RKLNELIASE 162

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA----CRVHRNAEM 326
            ++ +    + ++ + GR   +EEAE      P K D V W  ++ A     R  R  E+
Sbjct: 163 ALEIDSHVESSLITMYGRCREIEEAERAFDRSPEK-DVVCWTAMISAYAHNWRTSRALEL 221

Query: 327 GQRI 330
            +R+
Sbjct: 222 VRRM 225


>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 198/548 (36%), Positives = 306/548 (55%), Gaps = 39/548 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +++SF Y   + N+ I  Y+ CG +  A  VF   +   V SWN++I G+ +NG+ ++ L
Sbjct: 443 LRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKAL 502

Query: 63  KLFDKMPQ----RNDVSWNSILGGLVRFGSVDDACRV----------------------- 95
             + +M +     +D S  S+L    R G +     +                       
Sbjct: 503 DFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLY 562

Query: 96  ------------FNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
                       F  M  ++ V W  ++SG++QN  P EAL+LFR+M S  LEP+   + 
Sbjct: 563 FHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIA 622

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           S+L AC+QL AL  G  V+ +  K  +  D+ +  +L+DMYAK G +  + ++F+    K
Sbjct: 623 SILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGK 682

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           +V+++   I G  ++G   +A ELFE+MK     PD  +++ VL AC H G V +G  Y 
Sbjct: 683 EVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYL 742

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
             M  ++ ++PEL+HYAC++D+LGRAG L EA NFI  MP +PD  IW +LL +   + +
Sbjct: 743 AQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEEPDAKIWSSLLSSSITYVD 802

Query: 324 AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE 383
            EMG++    L+  + N    YILLSN+Y    K +    VR+ M+   +++  GCS IE
Sbjct: 803 LEMGEKFAEKLLALEANKADSYILLSNLYATAGKWDVVRMVRQKMKDLSLQKDVGCSWIE 862

Query: 384 LDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYH 443
           L G V+ F+AG+ S+  + EI + W  + K+I   GY  +   V+ ++EE EK  ++  H
Sbjct: 863 LRGKVYSFIAGENSNPSSDEIRKMWNRLEKQIVEIGYTPDCSCVLHELEEVEKRKILKGH 922

Query: 444 SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
           SEK+A+ FG + TK G+ +RI KN+RIC DCH+A K +SK  KR+I IRD K +HHF+ G
Sbjct: 923 SEKVAICFGFLNTKEGTTLRISKNLRICRDCHNAAKYISKAAKREIVIRDNKRFHHFKKG 982

Query: 504 SCSCLEYW 511
            CSC +YW
Sbjct: 983 ICSCGDYW 990



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 107/390 (27%), Positives = 174/390 (44%), Gaps = 46/390 (11%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           M VK    +++ V N+LI  YS CG + +A  +F + ++  VVSWNSMI  Y R G + E
Sbjct: 338 MAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFE 397

Query: 61  GLKLFDKM------------------P-----------------------QRNDVSWNSI 79
              L  KM                  P                       Q  ++  N+ 
Sbjct: 398 TFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAF 457

Query: 80  LGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS 139
           +    + GS+  A  VF  M  +S+ SW  +I G AQNG P +AL  + EM  L + P+ 
Sbjct: 458 IAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDD 517

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
             +VSLL AC +LG L YG  ++ ++ +  ++++S +  +L+ +Y  C         F +
Sbjct: 518 FSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFET 577

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
            GDK+   + + + G + N    EA  LF  M S G+ PD I+  ++L ACS L  +  G
Sbjct: 578 MGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLG 637

Query: 260 FYYFHSMFDVHGIKPELDHYAC-MVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
               H  F +     E +  AC ++D+  ++G L  ++     +  K +   W  ++   
Sbjct: 638 -KEVHC-FALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGK-EVASWNVMITGF 694

Query: 319 RVHRNAEMGQRIGNMLIESDQNHDGRYILL 348
            VH        +   +  SD+  D R+  L
Sbjct: 695 GVHGQGNKAVELFEDMKRSDKQPD-RFTFL 723



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 99/407 (24%), Positives = 171/407 (42%), Gaps = 78/407 (19%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           M VK     D+FV N++I  Y  CG + +A  +FD+  + +++SWNS+I G+  NG  LE
Sbjct: 235 MAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLE 294

Query: 61  GLKLFDKMPQRND-----------------------------------------VSWNSI 79
             + F  + +  D                                         +  N++
Sbjct: 295 AYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNAL 354

Query: 80  LGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE--MQSLDLEP 137
           +    + G + +A  +F ++  +S+VSW  +I  +++ G   E   L R+  M+   +E 
Sbjct: 355 IDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEV 414

Query: 138 NSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVF 197
           N   +++LL AC +   L     ++ Y  +   +   ++  A I  YAKCGS+  A  VF
Sbjct: 415 NEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVF 474

Query: 198 HSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVE 257
                K VS++ + I G A NG  I+A + +  M   GI PD  S +++L AC  LG ++
Sbjct: 475 FGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQ 534

Query: 258 KG-----------------------FYYFH--------SMFDVHGIKPELDHYACMVDLL 286
            G                         YFH        + F+  G K  +  +  M+   
Sbjct: 535 YGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFETMGDKNSV-CWNAMLSGY 593

Query: 287 GRAGLLEEAENFIASM---PMKPDNVIWGTLLGACRVHRNAEMGQRI 330
            +  L  EA +    M    ++PD +   ++LGAC       +G+ +
Sbjct: 594 SQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEV 640



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 145/294 (49%), Gaps = 44/294 (14%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + V + F+ D  +   LI  YS+CG   ++R VFD   + ++  WN++++GYVRN    E
Sbjct: 133 LCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDE 192

Query: 61  GLKLFDKMP-----QRNDVSW-----------------------------------NSIL 80
            +  F ++      Q ++ ++                                   N+++
Sbjct: 193 AIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMI 252

Query: 81  GGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM-QSLD-LEPN 138
               + G +D+A  +F++MP+++L+SW  LI GF++NG   EA   FR + +S D L P+
Sbjct: 253 ALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPD 312

Query: 139 SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH 198
            A +V+LL  C+  G +D G  ++    K  +  + ++C ALIDMY+KCG +  A  +F 
Sbjct: 313 VATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFR 372

Query: 199 SYGDKDVSAYTSAIFGLAMNGHSIEAFELFEN--MKSKGISPDSISYIAVLSAC 250
              +K V ++ S I   +  G   E F+L     M+ + +  + ++ + +L AC
Sbjct: 373 KIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPAC 426



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 114/226 (50%), Gaps = 5/226 (2%)

Query: 95  VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL-DLEPNSAILVSLLSACAQLG 153
           VF+++  ++L  W  L+SG+ +N    EA+  F E+ S+ + +P++     L+ AC    
Sbjct: 165 VFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKC 224

Query: 154 ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIF 213
            +  G  V+    K  + +D  +  A+I +Y KCG +D A+++F    ++++ ++ S I 
Sbjct: 225 DIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIR 284

Query: 214 GLAMNGHSIEAFELFENM--KSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG 271
           G + NG  +EA+  F ++     G+ PD  + + +L  CS  G V+ G    H M    G
Sbjct: 285 GFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGM-VIHGMAVKLG 343

Query: 272 IKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
           +  EL     ++D+  + G L EA      +  K   V W +++GA
Sbjct: 344 LVHELMVCNALIDMYSKCGCLSEAAILFRKIENK-SVVSWNSMIGA 388


>gi|302823459|ref|XP_002993382.1| hypothetical protein SELMODRAFT_137057 [Selaginella moellendorffii]
 gi|300138813|gb|EFJ05567.1| hypothetical protein SELMODRAFT_137057 [Selaginella moellendorffii]
          Length = 655

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 190/545 (34%), Positives = 302/545 (55%), Gaps = 35/545 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
            +   F  D+ V+NSLI  Y+ CG  + A  VF++ +  +++S+ SMI  Y    + +E 
Sbjct: 111 AIAQGFGTDLVVQNSLIHMYAKCGSFKFAAGVFEKMEPKNLISYTSMIQAYTHTAKHVEA 170

Query: 62  LKLFDKM-----------------------------------PQRNDVSWNSILGGLVRF 86
            +L+ KM                                    +R  V  N+++G   RF
Sbjct: 171 YELYKKMLSEGIMPDIYAYAAALAVCPTIREGEAIHVKLGNHERRTPVCSNALVGMYGRF 230

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           G +  A  VF+ +  + L S+  +I+ FA+     +A++L+ EM+  +LEPN     S+L
Sbjct: 231 GRIASAKWVFDGIRYKDLASYNNMIAVFAKYDDGSKAISLYIEMEGRNLEPNLWTFTSVL 290

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
            AC++LGAL  G  ++  ++      D     AL++MYAKCGS   A  VF+  G K+V 
Sbjct: 291 DACSKLGALTEGKEIHKKVKGGDQPTDVAYNTALVNMYAKCGSTHEARAVFNDCGLKNVF 350

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
            +TS +   +  G S    E ++ M  +G+ PD +++ A+ +ACSH G  ++G  YF +M
Sbjct: 351 TWTSLMSAYSQPGQSQYRLEAYQRMNCEGVIPDDVTFTAIFNACSHSGLPDEGLLYFRAM 410

Query: 267 FDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEM 326
            + H I P   HY CM+DLLGR G L EAE  + +MP  PD V W  LL AC+V+ + ++
Sbjct: 411 REDHWIVPLQPHYTCMIDLLGRVGRLREAEELVRTMPYSPDVVTWTILLSACKVYGDLKI 470

Query: 327 GQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDG 386
           G R    + E +    G Y+L+ N+Y +  K  +  EV+K +++R + + PG S+IE   
Sbjct: 471 GARAYKRITELNPPDSGPYLLMGNMYAKAGKWADVAEVKKMIKQRGLAKPPGKSMIEAQR 530

Query: 387 VVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEK 446
            +HEF+ GD +H   QEI    +E+ +++ + GY  +T+ V+ D+ EE K  ++ +HSE+
Sbjct: 531 RIHEFVCGDTAHPLNQEIRARLQEVHEQLSHAGYEPDTKEVLVDVNEEVKPELLLFHSER 590

Query: 447 LALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCS 506
           +AL  GL+ +  G+ + IVKN+RIC DCHS  KLVSK+  RK+ +RD   +H F+ GSCS
Sbjct: 591 MALGLGLLTSDAGATLHIVKNLRICPDCHSFFKLVSKMLHRKVLVRDSHRFHIFQRGSCS 650

Query: 507 CLEYW 511
           C +YW
Sbjct: 651 CGDYW 655



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 99/176 (56%), Gaps = 2/176 (1%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136
           N ++    R  S+DDA   F+++ +++  S+ +++  + +N   K+AL LF++  + +L+
Sbjct: 21  NCLVRAYGRCKSIDDAVAAFSEIAEKNEYSYAIMMGAYQENDLHKKALQLFKKSINEELQ 80

Query: 137 PNSAILVSLLSACAQLGA--LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
            N A  V++L +CA LG   L+ G  ++ +   +    D ++  +LI MYAKCGS   A 
Sbjct: 81  QNQATYVTVLKSCAHLGEDYLEDGKEIHRHAIAQGFGTDLVVQNSLIHMYAKCGSFKFAA 140

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250
            VF     K++ +YTS I         +EA+EL++ M S+GI PD  +Y A L+ C
Sbjct: 141 GVFEKMEPKNLISYTSMIQAYTHTAKHVEAYELYKKMLSEGIMPDIYAYAAALAVC 196



 Score = 45.4 bits (106), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 63/140 (45%), Gaps = 5/140 (3%)

Query: 173 DSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMK 232
           ++ L   L+  Y +C SID A+  F    +K+  +Y   +     N    +A +LF+   
Sbjct: 16  ETFLGNCLVRAYGRCKSIDDAVAAFSEIAEKNEYSYAIMMGAYQENDLHKKALQLFKKSI 75

Query: 233 SKGISPDSISYIAVLSACSHLG--WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAG 290
           ++ +  +  +Y+ VL +C+HLG  ++E G    H      G   +L     ++ +  + G
Sbjct: 76  NEELQQNQATYVTVLKSCAHLGEDYLEDG-KEIHRHAIAQGFGTDLVVQNSLIHMYAKCG 134

Query: 291 LLEEAENFIASMPMKPDNVI 310
             + A        M+P N+I
Sbjct: 135 SFKFAAGVFEK--MEPKNLI 152


>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial; Flags: Precursor
 gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 628

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 195/552 (35%), Positives = 311/552 (56%), Gaps = 43/552 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K  +    +++  L+ FY  C  + DAR V DE  + +VVSW +MI+ Y + G   E 
Sbjct: 78  MIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEA 137

Query: 62  LKLFDKMPQRND-------------------------------VSWN---------SILG 81
           L +F +M  R+D                               V WN         S+L 
Sbjct: 138 LTVFAEM-MRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLD 196

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G + +A  +F  +P+R +VS   +I+G+AQ G  +EAL +F  + S  + PN   
Sbjct: 197 MYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVT 256

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
             SLL+A + L  LD+G   + ++ ++ +   ++L  +LIDMY+KCG++  A ++F +  
Sbjct: 257 YASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMP 316

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMK-SKGISPDSISYIAVLSACSHLGWVEKGF 260
           ++   ++ + + G + +G   E  ELF  M+  K + PD+++ +AVLS CSH    + G 
Sbjct: 317 ERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGL 376

Query: 261 YYFHSMF-DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACR 319
             F  M    +G KP  +HY C+VD+LGRAG ++EA  FI  MP KP   + G+LLGACR
Sbjct: 377 NIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACR 436

Query: 320 VHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGC 379
           VH + ++G+ +G  LIE +  + G Y++LSN+Y    +  +   VR  M ++ + + PG 
Sbjct: 437 VHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGRWADVNNVRAMMMQKAVTKEPGR 496

Query: 380 SLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETV 439
           S I+ +  +H F A DR+H + +E+    +EI  K+K  GY  +   V++D++EE+KE +
Sbjct: 497 SWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDLSCVLYDVDEEQKEKM 556

Query: 440 IGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHH 499
           +  HSEKLAL FGLI T  G  IR+ KN+RIC DCH+  K+ SKVF+R++S+RD+  +H 
Sbjct: 557 LLGHSEKLALTFGLIATGEGIPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQ 616

Query: 500 FEDGSCSCLEYW 511
             DG CSC +YW
Sbjct: 617 IVDGICSCGDYW 628



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 121/256 (47%), Gaps = 42/256 (16%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++VK ++   +FV +SL+  Y+  G++++AR +F+   + DVVS  ++I GY + G   E
Sbjct: 178 LIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEE 237

Query: 61  GLKLFDKMPQR----NDVSWNSILGGL--------------------------------- 83
            L++F ++       N V++ S+L  L                                 
Sbjct: 238 ALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLID 297

Query: 84  --VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD-LEPNSA 140
              + G++  A R+F+ MP+R+ +SW  ++ G++++G  +E L LFR M+    ++P++ 
Sbjct: 298 MYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAV 357

Query: 141 ILVSLLSACAQLGALDYGNWVYSYI--QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH 198
            L+++LS C+     D G  ++  +   +   K  +     ++DM  + G ID A +   
Sbjct: 358 TLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIK 417

Query: 199 SYGDKDVSAYTSAIFG 214
               K  +    ++ G
Sbjct: 418 RMPSKPTAGVLGSLLG 433



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 101/219 (46%), Gaps = 22/219 (10%)

Query: 94  RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153
           R F+  P   ++  ++ IS    NGR +EAL    EM  L  E       +LL+AC    
Sbjct: 10  RSFSSSPTNYVLQTILPISQLCSNGRLQEALL---EMAMLGPEMGFHGYDALLNACLDKR 66

Query: 154 ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIF 213
           AL  G  V++++ K      + L   L+  Y KC  ++ A +V     +K+V ++T+ I 
Sbjct: 67  ALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMIS 126

Query: 214 GLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC---SHLGWVEKGFYYFHSMFDVH 270
             +  GHS EA  +F  M      P+  ++  VL++C   S LG  ++          +H
Sbjct: 127 RYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQ----------IH 176

Query: 271 G--IKPELDHY----ACMVDLLGRAGLLEEAENFIASMP 303
           G  +K   D +    + ++D+  +AG ++EA      +P
Sbjct: 177 GLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLP 215


>gi|218546768|sp|Q8S9M4.2|PP198_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g41080
          Length = 650

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 202/537 (37%), Positives = 298/537 (55%), Gaps = 40/537 (7%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP----Q 70
           N LI  Y   G + +AR VFDE  D  + +WN+MI G ++     EGL LF +M      
Sbjct: 114 NILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFS 173

Query: 71  RNDVSWNSILGG-----------------------------------LVRFGSVDDACRV 95
            ++ +  S+  G                                    +R G + D   V
Sbjct: 174 PDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIV 233

Query: 96  FNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGAL 155
              MP R+LV+W  LI G AQNG P+  L L++ M+     PN    V++LS+C+ L   
Sbjct: 234 IRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIR 293

Query: 156 DYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGL 215
             G  +++   K        + ++LI MY+KCG +  A + F    D+D   ++S I   
Sbjct: 294 GQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAY 353

Query: 216 AMNGHSIEAFELFENMKSK-GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP 274
             +G   EA ELF  M  +  +  + ++++ +L ACSH G  +KG   F  M + +G KP
Sbjct: 354 GFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKP 413

Query: 275 ELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNML 334
            L HY C+VDLLGRAG L++AE  I SMP+K D VIW TLL AC +H+NAEM QR+   +
Sbjct: 414 GLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEI 473

Query: 335 IESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAG 394
           ++ D N    Y+LL+N++    +  +  EVRK+MR + +K+  G S  E  G VH+F  G
Sbjct: 474 LQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMG 533

Query: 395 DRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLI 454
           DRS  K++EIY + +E+  ++K  GY  +T SV+ D++EEEKE+ +  HSEKLA+AF L+
Sbjct: 534 DRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALM 593

Query: 455 CTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
               G+ IRI+KN+R+CSDCH A K +S +  R+I++RD   +HHF +G CSC +YW
Sbjct: 594 ILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGDYW 650



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 161/358 (44%), Gaps = 33/358 (9%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++V + F+ D F+ N L+  YS  G    A  V+      + +S N +INGYVR G+++ 
Sbjct: 69  LLVVSGFSSDKFICNHLMSMYSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVN 128

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
             K+FD+MP R   +WN+++ GL++F         FN+                      
Sbjct: 129 ARKVFDEMPDRKLTTWNAMIAGLIQFE--------FNE---------------------- 158

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
            E L+LFREM  L   P+   L S+ S  A L ++  G  ++ Y  K  ++LD ++ ++L
Sbjct: 159 -EGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSL 217

Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
             MY + G +     V  S   +++ A+ + I G A NG       L++ MK  G  P+ 
Sbjct: 218 AHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNK 277

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
           I+++ VLS+CS L    +G    H+     G    +   + ++ +  + G L +A    +
Sbjct: 278 ITFVTVLSSCSDLAIRGQG-QQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFS 336

Query: 301 SMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKG 358
                 D V+W +++ A   H   +    + N + E           L+ +Y  +  G
Sbjct: 337 ERE-DEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSG 393



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 95/242 (39%), Gaps = 37/242 (15%)

Query: 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSY 164
           V     I+     G  +EA   FR    L++  N+++    + +C    +L  G  ++  
Sbjct: 14  VDPATAIATLCSKGNLREAFQRFR----LNIFTNTSLFTPFIQSCTTRQSLPSGKQLHCL 69

Query: 165 IQKKCIKLDSILCAALIDMYAKCGSI-----------------------------DL--A 193
           +       D  +C  L+ MY+K G                               DL  A
Sbjct: 70  LVVSGFSSDKFICNHLMSMYSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNA 129

Query: 194 MQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL 253
            +VF    D+ ++ + + I GL     + E   LF  M   G SPD  +  +V S  + L
Sbjct: 130 RKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGL 189

Query: 254 GWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGT 313
             V  G    H     +G++ +L   + +  +  R G L++ E  I SMP++ + V W T
Sbjct: 190 RSVSIG-QQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVR-NLVAWNT 247

Query: 314 LL 315
           L+
Sbjct: 248 LI 249



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/239 (21%), Positives = 96/239 (40%), Gaps = 41/239 (17%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
            +K     D+ V +SL   Y   G+++D   V       ++V+WN++I G  +NG     
Sbjct: 202 TIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETV 261

Query: 62  LKLFDKMP----QRNDVSWNSILGG----------------------------------- 82
           L L+  M     + N +++ ++L                                     
Sbjct: 262 LYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISM 321

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM-QSLDLEPNSAI 141
             + G + DA + F++      V W  +IS +  +G+  EA+ LF  M +  ++E N   
Sbjct: 322 YSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVA 381

Query: 142 LVSLLSACAQLGALDYGNWVYS-YIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
            ++LL AC+  G  D G  ++   ++K   K        ++D+  + G +D A  +  S
Sbjct: 382 FLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRS 440


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 195/550 (35%), Positives = 306/550 (55%), Gaps = 39/550 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNG---- 56
           + +K  F  D++V   LI  YS  G +  AR + +  +  DVVSW SMI GYV++     
Sbjct: 370 LSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKE 429

Query: 57  --EILEGLKLFDKMPQR--------------------------------NDVS-WNSILG 81
             E  + ++LF   P                                   DVS WN+++ 
Sbjct: 430 ALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVN 489

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              R G   +A  +F  +  +  ++W  ++SGFAQ+G  +EAL +F +M    ++ N   
Sbjct: 490 LYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFT 549

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
            VS +SA A L  +  G  +++ + K     ++ +  ALI +Y KCGSI+ A   F    
Sbjct: 550 FVSSISASANLADIKQGKQIHATVIKTGCTSETEVANALISLYGKCGSIEDAKMQFFEMS 609

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
           +++  ++ + I   + +G  +EA +LF+ MK +G+ P+ +++I VL+ACSH+G VE+G  
Sbjct: 610 ERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLG 669

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           YF SM   HGI P  DHYAC+VD+LGRAG L+ A  F+  MP+  + ++W TLL ACRVH
Sbjct: 670 YFKSMSSEHGIHPRPDHYACVVDILGRAGQLDRARKFVEEMPVSANAMVWRTLLSACRVH 729

Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
           +N E+G+     L+E + +    Y+LLSN Y  T K    + VRK M+ R +++ PG S 
Sbjct: 730 KNIEIGELAAKYLLELEPHDSASYVLLSNAYAVTGKWACRDHVRKMMKDRGVRKEPGRSW 789

Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIG 441
           IE+  VVH F  GDR H    +IY++  ++  ++   GY      +  + E+E+K+    
Sbjct: 790 IEVKNVVHAFFVGDRLHPLAHQIYKYLADLDDRLAKIGYIQGNYFLFHEKEKEQKDPTAF 849

Query: 442 YHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
            HSEKLA+AFGL+   P   +R++KN+R+C+DCH+ MK  S+V  R+I +RD   +HHF 
Sbjct: 850 VHSEKLAVAFGLMSLPPSMPLRVIKNLRVCNDCHTWMKFTSEVMGREIVLRDVYRFHHFN 909

Query: 502 DGSCSCLEYW 511
           +G+CSC ++W
Sbjct: 910 NGNCSCGDFW 919



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 163/347 (46%), Gaps = 41/347 (11%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM- 68
           D    N LI  Y+  G V+ AR VF++    D VSW +M++GY RNG   E + L+ +M 
Sbjct: 76  DRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGLGEEAVGLYHQMH 135

Query: 69  -----PQ---------------------------------RNDVSWNSILGGLVRFGSVD 90
                P                                     V  N+++   +RFGS+ 
Sbjct: 136 CSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLS 195

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
            A RVF++MP    V++  LIS  AQ G  + AL +F EM+     P+   + SLL+ACA
Sbjct: 196 LAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACA 255

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
            +G L+ G  ++SY+ K  +  D I+  +L+D+Y KCG I  A+++F S    +V  +  
Sbjct: 256 SIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNL 315

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            +          ++F+LF  M + G+ P+  +Y  +L  C++ G +  G    H +    
Sbjct: 316 MLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLG-EQIHLLSIKT 374

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
           G + ++     ++D+  + G L++A   +  +  K D V W +++  
Sbjct: 375 GFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAK-DVVSWTSMIAG 420



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 169/359 (47%), Gaps = 41/359 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K   + D  ++ SL+  Y  CG + +A  +F   D  +VV WN M+  Y +  ++ + 
Sbjct: 270 LLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKS 329

Query: 62  LKLFDKM----PQRNDVSWNSIL-------------------------------GGLV-- 84
             LF +M     + N+ ++  +L                               G L+  
Sbjct: 330 FDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDM 389

Query: 85  --RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             ++G +D A R+   +  + +VSW  +I+G+ Q+   KEAL  F++MQ   + P++  L
Sbjct: 390 YSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGL 449

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S +SACA + A+  G  ++S +       D  +  AL+++YA+CG    A  +F +   
Sbjct: 450 ASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEH 509

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           KD   +   + G A +G   EA E+F  M   G+  +  ++++ +SA ++L  +++G   
Sbjct: 510 KDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQG-KQ 568

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            H+     G   E +    ++ L G+ G +E+A+     M  + ++V W T++ +C  H
Sbjct: 569 IHATVIKTGCTSETEVANALISLYGKCGSIEDAKMQFFEMSER-NHVSWNTIITSCSQH 626



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 146/309 (47%), Gaps = 10/309 (3%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESD----DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ 70
           N+LI  ++ CG    A  +F+E        D V+  S++      G++ +G +L   + +
Sbjct: 213 NTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLK 272

Query: 71  R----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALAL 126
                + +   S+L   V+ G + +A  +F    + ++V W +++  + Q     ++  L
Sbjct: 273 AGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDL 332

Query: 127 FREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAK 186
           F +M +  + PN      LL  C   G ++ G  ++    K   + D  +   LIDMY+K
Sbjct: 333 FCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSK 392

Query: 187 CGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAV 246
            G +D A ++      KDV ++TS I G   +    EA E F++M+  GI PD+I   + 
Sbjct: 393 YGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASA 452

Query: 247 LSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKP 306
           +SAC+ +  + +G    HS   V G   ++  +  +V+L  R G  +EA +   ++  K 
Sbjct: 453 ISACAGIKAMRQG-QQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHK- 510

Query: 307 DNVIWGTLL 315
           D + W  ++
Sbjct: 511 DKITWNGMV 519



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 101/245 (41%), Gaps = 38/245 (15%)

Query: 99  MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
           M +R+  S    ++GF  +  P++ L+LF                + +  C  LG++D+ 
Sbjct: 1   MTRRAAASLNKSLTGFLAHEDPEKLLSLF---------------AAKVRQCRGLGSVDFA 45

Query: 159 -----------NW-VYSYIQKKCIKL----DSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
                      +W +   I  K I      D I    LID+YAK G +  A +VF     
Sbjct: 46  CALRECRGSVKHWPLVPVIHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSA 105

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           +D  ++ + + G A NG   EA  L+  M   G+ P      +VLSAC+     E+G   
Sbjct: 106 RDNVSWVAMLSGYARNGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQG-RL 164

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
            H+     G   E      ++ L  R G L  AE   + MP   D V + TL     + R
Sbjct: 165 VHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPY-CDRVTFNTL-----ISR 218

Query: 323 NAEMG 327
           +A+ G
Sbjct: 219 HAQCG 223


>gi|30688521|ref|NP_850342.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|18491267|gb|AAL69458.1| At2g41080/T3K9.15 [Arabidopsis thaliana]
 gi|330254831|gb|AEC09925.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 565

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 202/537 (37%), Positives = 298/537 (55%), Gaps = 40/537 (7%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP----Q 70
           N LI  Y   G + +AR VFDE  D  + +WN+MI G ++     EGL LF +M      
Sbjct: 29  NILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFS 88

Query: 71  RNDVSWNSILGG-----------------------------------LVRFGSVDDACRV 95
            ++ +  S+  G                                    +R G + D   V
Sbjct: 89  PDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIV 148

Query: 96  FNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGAL 155
              MP R+LV+W  LI G AQNG P+  L L++ M+     PN    V++LS+C+ L   
Sbjct: 149 IRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIR 208

Query: 156 DYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGL 215
             G  +++   K        + ++LI MY+KCG +  A + F    D+D   ++S I   
Sbjct: 209 GQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAY 268

Query: 216 AMNGHSIEAFELFENMKSK-GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP 274
             +G   EA ELF  M  +  +  + ++++ +L ACSH G  +KG   F  M + +G KP
Sbjct: 269 GFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKP 328

Query: 275 ELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNML 334
            L HY C+VDLLGRAG L++AE  I SMP+K D VIW TLL AC +H+NAEM QR+   +
Sbjct: 329 GLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEI 388

Query: 335 IESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAG 394
           ++ D N    Y+LL+N++    +  +  EVRK+MR + +K+  G S  E  G VH+F  G
Sbjct: 389 LQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMG 448

Query: 395 DRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLI 454
           DRS  K++EIY + +E+  ++K  GY  +T SV+ D++EEEKE+ +  HSEKLA+AF L+
Sbjct: 449 DRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALM 508

Query: 455 CTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
               G+ IRI+KN+R+CSDCH A K +S +  R+I++RD   +HHF +G CSC +YW
Sbjct: 509 ILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGDYW 565



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 145/302 (48%), Gaps = 2/302 (0%)

Query: 52  YVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLI 111
           Y + G+    + ++ +M ++N +S N ++ G VR G + +A +VF++MP R L +W  +I
Sbjct: 4   YSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMI 63

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK 171
           +G  Q    +E L+LFREM  L   P+   L S+ S  A L ++  G  ++ Y  K  ++
Sbjct: 64  AGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLE 123

Query: 172 LDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM 231
           LD ++ ++L  MY + G +     V  S   +++ A+ + I G A NG       L++ M
Sbjct: 124 LDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMM 183

Query: 232 KSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGL 291
           K  G  P+ I+++ VLS+CS L    +G    H+     G    +   + ++ +  + G 
Sbjct: 184 KISGCRPNKITFVTVLSSCSDLAIRGQG-QQIHAEAIKIGASSVVAVVSSLISMYSKCGC 242

Query: 292 LEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNI 351
           L +A    +      D V+W +++ A   H   +    + N + E           L+ +
Sbjct: 243 LGDAAKAFSERE-DEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLL 301

Query: 352 YV 353
           Y 
Sbjct: 302 YA 303



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/239 (21%), Positives = 96/239 (40%), Gaps = 41/239 (17%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
            +K     D+ V +SL   Y   G+++D   V       ++V+WN++I G  +NG     
Sbjct: 117 TIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETV 176

Query: 62  LKLFDKMP----QRNDVSWNSILGG----------------------------------- 82
           L L+  M     + N +++ ++L                                     
Sbjct: 177 LYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISM 236

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM-QSLDLEPNSAI 141
             + G + DA + F++      V W  +IS +  +G+  EA+ LF  M +  ++E N   
Sbjct: 237 YSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVA 296

Query: 142 LVSLLSACAQLGALDYGNWVYS-YIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
            ++LL AC+  G  D G  ++   ++K   K        ++D+  + G +D A  +  S
Sbjct: 297 FLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRS 355


>gi|297794157|ref|XP_002864963.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310798|gb|EFH41222.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 720

 Score =  368 bits (945), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 215/543 (39%), Positives = 306/543 (56%), Gaps = 45/543 (8%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM- 68
           +VFV ++L+  Y   G+ R+A+ V D  ++ DVV   ++I GY + GE  E +K F  M 
Sbjct: 182 NVFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSML 241

Query: 69  ---PQRNDVSWNSIL---GGLVRFGS--------------------------------VD 90
               Q N+ ++ S+L   G L   G+                                VD
Sbjct: 242 VEKVQPNEYTYASVLISCGNLKDIGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVD 301

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           D+  VF  +   + V+W  LISG  QNGR + AL  FR+M    ++PNS  L S L  C+
Sbjct: 302 DSLLVFKCIKYPNQVTWTSLISGLVQNGREETALIEFRKMMRDSVKPNSFTLSSALRGCS 361

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
            L   + G  V+  + K     D    + LI++Y KCG  D+A  VF +  + DV +  +
Sbjct: 362 NLAMFEEGRQVHGIVSKYGFDRDKYAGSGLIELYGKCGCSDMARLVFDTLSEVDVISLNT 421

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I+  A NG   EA ELFE M + G+ P+ ++ ++VL AC++ G VE+G   F S F   
Sbjct: 422 MIYSYAQNGFGREALELFERMINLGLQPNDVTVLSVLLACNNSGLVEEGCELFDS-FRKD 480

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
            I    DHYACMVD+LGRAG LEEAE  I  +   PD V+W TLL AC+VHR  EM +RI
Sbjct: 481 KIMLTNDHYACMVDMLGRAGRLEEAEMLITEVT-NPDLVLWRTLLSACKVHRKVEMAERI 539

Query: 331 GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHE 390
              ++E     +G  ILLSN+Y  T K +   E++  M++ K+K+ P  S +E+D   H 
Sbjct: 540 TRKILEIAPGDEGTLILLSNLYASTGKWKRVIEMKSKMKEMKLKKNPAMSWVEIDKETHT 599

Query: 391 FLAGDR-SHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMF-DIEEEEKETVIGYHSEKLA 448
           F+AGD  SH  +++I +  EE++KK K+ GY VE +S +F D+EE  KE  +  HSEKLA
Sbjct: 600 FMAGDLFSHPNSEQILENLEELIKKAKDLGY-VEDKSCVFQDMEETAKERSLHQHSEKLA 658

Query: 449 LAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCL 508
           +AF  +    G  IRI+KN+R+C DCHS +K+VS++ KR+I  RD K +HHF DGSCSC 
Sbjct: 659 IAFA-VWRNVGGSIRILKNLRVCVDCHSWIKIVSRIIKREIICRDSKRFHHFRDGSCSCG 717

Query: 509 EYW 511
           +YW
Sbjct: 718 DYW 720



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 120/246 (48%), Gaps = 3/246 (1%)

Query: 73  DVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQS 132
           ++S + ++   ++ G +  A ++F+ MP+R +V+W  +I+ + ++ R KEA+ ++R M S
Sbjct: 81  ELSGSKLVDASLKCGEIGYARQLFDGMPERHIVTWNSIIAYYIKHRRSKEAVEMYRLMIS 140

Query: 133 LDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILC-AALIDMYAKCGSID 191
            ++ P+   L S+  A + L         +       +++ ++   +AL+DMY K G   
Sbjct: 141 NNVLPDEYTLSSVFKAFSDLSLEKEAQRSHGLAVILGLEVSNVFVGSALVDMYVKFGKTR 200

Query: 192 LAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS 251
            A  V     +KDV   T+ I G +  G   EA + F++M  + + P+  +Y +VL +C 
Sbjct: 201 EAKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLVEKVQPNEYTYASVLISCG 260

Query: 252 HLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIW 311
           +L  +  G    H +    G +  L     ++ +  R  L++++      +   P+ V W
Sbjct: 261 NLKDIGNG-KLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSLLVFKCIKY-PNQVTW 318

Query: 312 GTLLGA 317
            +L+  
Sbjct: 319 TSLISG 324



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 106/245 (43%), Gaps = 41/245 (16%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++VK+ F   +  + SL+  Y  C  V D+  VF      + V+W S+I+G V+NG    
Sbjct: 274 LMVKSGFESALASQTSLLTMYLRCSLVDDSLLVFKCIKYPNQVTWTSLISGLVQNGREET 333

Query: 61  GLKLFDKMPQRNDVSWNSIL------------------------------------GGLV 84
            L  F KM  R+ V  NS                                       GL+
Sbjct: 334 ALIEFRKM-MRDSVKPNSFTLSSALRGCSNLAMFEEGRQVHGIVSKYGFDRDKYAGSGLI 392

Query: 85  RF----GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
                 G  D A  VF+ + +  ++S   +I  +AQNG  +EAL LF  M +L L+PN  
Sbjct: 393 ELYGKCGCSDMARLVFDTLSEVDVISLNTMIYSYAQNGFGREALELFERMINLGLQPNDV 452

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
            ++S+L AC   G ++ G  ++   +K  I L +   A ++DM  + G ++ A  +    
Sbjct: 453 TVLSVLLACNNSGLVEEGCELFDSFRKDKIMLTNDHYACMVDMLGRAGRLEEAEMLITEV 512

Query: 201 GDKDV 205
            + D+
Sbjct: 513 TNPDL 517



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 81/157 (51%), Gaps = 12/157 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V K  F  D +  + LI+ Y  CG    AR VFD   ++DV+S N+MI  Y +NG   E
Sbjct: 375 IVSKYGFDRDKYAGSGLIELYGKCGCSDMARLVFDTLSEVDVISLNTMIYSYAQNGFGRE 434

Query: 61  GLKLFDKM----PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV----SWVVLIS 112
            L+LF++M     Q NDV+  S+L      G V++ C +F+   K  ++     +  ++ 
Sbjct: 435 ALELFERMINLGLQPNDVTVLSVLLACNNSGLVEEGCELFDSFRKDKIMLTNDHYACMVD 494

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
              + GR +EA  L  E+ +    P+  +  +LLSAC
Sbjct: 495 MLGRAGRLEEAEMLITEVTN----PDLVLWRTLLSAC 527


>gi|125535994|gb|EAY82482.1| hypothetical protein OsI_37700 [Oryza sativa Indica Group]
          Length = 584

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 187/427 (43%), Positives = 281/427 (65%), Gaps = 2/427 (0%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           G +  A ++F+ +  RS+V+W  +ISG+ QNG  + A+ ++REMQ   + P+SA  V+ L
Sbjct: 158 GQLPVARKLFDAIRDRSVVAWNAMISGYEQNGLAERAIEVYREMQVAQVVPDSATFVTTL 217

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
           SACAQ GALD G  V   I    + +   L +AL++MYA+CG +  A   F    +++V 
Sbjct: 218 SACAQAGALDLGREVERRIVSDQMDVSVFLGSALVNMYARCGLVSKARDWFDRLQERNVV 277

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
            +TS I G  M+GH  EA +LF  M+ +G +P+ ++++AVL+AC+H G V +G   F SM
Sbjct: 278 TWTSMIAGYGMHGHGCEAIKLFHLMRLEGPTPNDVTFVAVLAACAHAGLVNEGRSAFDSM 337

Query: 267 FDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA-SMPMKPDNVIWGTLLGACRVHRNAE 325
             V+G+ P  +HY  MVD+ GRAGLL++A  FI  S+P +P   +W  +LGAC++H+N  
Sbjct: 338 KRVYGLVPRAEHYCSMVDMYGRAGLLDDAMQFIRDSIPGEPGPEVWTAMLGACKMHKNFN 397

Query: 326 MGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELD 385
           +G  +   LI  +  +    +LLSNIY  + K  + E+VR  M KR++K+  G SLIEL 
Sbjct: 398 LGVEVAERLIALEPENPSHRVLLSNIYALSGKMNHVEKVRNVMIKRRLKKQIGYSLIELG 457

Query: 386 GVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSE 445
           G  H F  G++SH++T+EIYQ+ EE++ +I + GY  ET SV+ ++EEEE+E  + YHSE
Sbjct: 458 GTSHLFRMGEKSHQQTREIYQYLEELIHRISDAGYVPETDSVLHELEEEEREVALRYHSE 517

Query: 446 KLALAFGLICTKPGSV-IRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGS 504
           KLA+A+GL+ +   +  IR++KN+RIC DCH A+K +S V  R+I +RD+  +HHF+DG 
Sbjct: 518 KLAVAYGLMMSSGSTTPIRVIKNLRICGDCHLAIKFMSSVESREIIVRDKHRFHHFKDGK 577

Query: 505 CSCLEYW 511
           CSCLEYW
Sbjct: 578 CSCLEYW 584



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 133/285 (46%), Gaps = 46/285 (16%)

Query: 7   FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFD 66
           F  D FV+ +L+  YS CG++  AR +FD   D  VV+WN+MI+GY +NG     ++++ 
Sbjct: 140 FGSDRFVQTALVVLYSKCGQLPVARKLFDAIRDRSVVAWNAMISGYEQNGLAERAIEVYR 199

Query: 67  KM------------------------------------PQRNDVS---WNSILGGLVRFG 87
           +M                                      + DVS    ++++    R G
Sbjct: 200 EMQVAQVVPDSATFVTTLSACAQAGALDLGREVERRIVSDQMDVSVFLGSALVNMYARCG 259

Query: 88  SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLS 147
            V  A   F+++ +R++V+W  +I+G+  +G   EA+ LF  M+     PN    V++L+
Sbjct: 260 LVSKARDWFDRLQERNVVTWTSMIAGYGMHGHGCEAIKLFHLMRLEGPTPNDVTFVAVLA 319

Query: 148 ACAQLGALDYGNWVYSYIQK--KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY--GDK 203
           ACA  G ++ G   +  +++    +      C +++DMY + G +D AMQ       G+ 
Sbjct: 320 ACAHAGLVNEGRSAFDSMKRVYGLVPRAEHYC-SMVDMYGRAGLLDDAMQFIRDSIPGEP 378

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248
               +T+ +    M+ +     E+ E + +  + P++ S+  +LS
Sbjct: 379 GPEVWTAMLGACKMHKNFNLGVEVAERLIA--LEPENPSHRVLLS 421



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 150/339 (44%), Gaps = 20/339 (5%)

Query: 110 LISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC 169
           L    A  G P EA+A +  + +  L  +S    +   ACA L AL  G  V+++     
Sbjct: 80  LARAAAHRGLPGEAIAFYGRLLAAALPFSSFAFTAAAKACADLSALRTGMAVHAHSVLLG 139

Query: 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFE 229
              D  +  AL+ +Y+KCG + +A ++F +  D+ V A+ + I G   NG +  A E++ 
Sbjct: 140 FGSDRFVQTALVVLYSKCGQLPVARKLFDAIRDRSVVAWNAMISGYEQNGLAERAIEVYR 199

Query: 230 NMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHY----ACMVDL 285
            M+   + PDS +++  LSAC+  G ++ G        +   +  ++D      + +V++
Sbjct: 200 EMQVAQVVPDSATFVTTLSACAQAGALDLG-----REVERRIVSDQMDVSVFLGSALVNM 254

Query: 286 LGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH-RNAEMGQRIGNMLIESDQNHDGR 344
             R GL+ +A ++   +  + + V W +++    +H    E  +    M +E    +D  
Sbjct: 255 YARCGLVSKARDWFDRLQER-NVVTWTSMIAGYGMHGHGCEAIKLFHLMRLEGPTPNDVT 313

Query: 345 YI-LLSNIYVETL--KGENAEEVRKTMRKRKIKRAPGCSLIELDGV------VHEFLAGD 395
           ++ +L+      L  +G +A +  K +     +    CS++++ G         +F+   
Sbjct: 314 FVAVLAACAHAGLVNEGRSAFDSMKRVYGLVPRAEHYCSMVDMYGRAGLLDDAMQFIRDS 373

Query: 396 RSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEE 434
              E   E++       K  KN+   VE    +  +E E
Sbjct: 374 IPGEPGPEVWTAMLGACKMHKNFNLGVEVAERLIALEPE 412



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 78/157 (49%), Gaps = 11/157 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +V +     VF+ ++L+  Y+ CG V  AR  FD   + +VV+W SMI GY  +G   E 
Sbjct: 236 IVSDQMDVSVFLGSALVNMYARCGLVSKARDWFDRLQERNVVTWTSMIAGYGMHGHGCEA 295

Query: 62  LKLFDKM----PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPK-RSLVS----WVVLIS 112
           +KLF  M    P  NDV++ ++L      G V++    F+ M +   LV     +  ++ 
Sbjct: 296 IKLFHLMRLEGPTPNDVTFVAVLAACAHAGLVNEGRSAFDSMKRVYGLVPRAEHYCSMVD 355

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
            + + G   +A+   R+  S+  EP   +  ++L AC
Sbjct: 356 MYGRAGLLDDAMQFIRD--SIPGEPGPEVWTAMLGAC 390


>gi|3402709|gb|AAD12003.1| hypothetical protein [Arabidopsis thaliana]
          Length = 563

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 202/537 (37%), Positives = 298/537 (55%), Gaps = 40/537 (7%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP----Q 70
           N LI  Y   G + +AR VFDE  D  + +WN+MI G ++     EGL LF +M      
Sbjct: 27  NILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFS 86

Query: 71  RNDVSWNSILGG-----------------------------------LVRFGSVDDACRV 95
            ++ +  S+  G                                    +R G + D   V
Sbjct: 87  PDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIV 146

Query: 96  FNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGAL 155
              MP R+LV+W  LI G AQNG P+  L L++ M+     PN    V++LS+C+ L   
Sbjct: 147 IRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIR 206

Query: 156 DYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGL 215
             G  +++   K        + ++LI MY+KCG +  A + F    D+D   ++S I   
Sbjct: 207 GQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAY 266

Query: 216 AMNGHSIEAFELFENMKSK-GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP 274
             +G   EA ELF  M  +  +  + ++++ +L ACSH G  +KG   F  M + +G KP
Sbjct: 267 GFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKP 326

Query: 275 ELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNML 334
            L HY C+VDLLGRAG L++AE  I SMP+K D VIW TLL AC +H+NAEM QR+   +
Sbjct: 327 GLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEI 386

Query: 335 IESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAG 394
           ++ D N    Y+LL+N++    +  +  EVRK+MR + +K+  G S  E  G VH+F  G
Sbjct: 387 LQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMG 446

Query: 395 DRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLI 454
           DRS  K++EIY + +E+  ++K  GY  +T SV+ D++EEEKE+ +  HSEKLA+AF L+
Sbjct: 447 DRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALM 506

Query: 455 CTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
               G+ IRI+KN+R+CSDCH A K +S +  R+I++RD   +HHF +G CSC +YW
Sbjct: 507 ILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGDYW 563



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 145/302 (48%), Gaps = 2/302 (0%)

Query: 52  YVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLI 111
           Y + G+    + ++ +M ++N +S N ++ G VR G + +A +VF++MP R L +W  +I
Sbjct: 2   YSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMI 61

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK 171
           +G  Q    +E L+LFREM  L   P+   L S+ S  A L ++  G  ++ Y  K  ++
Sbjct: 62  AGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLE 121

Query: 172 LDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM 231
           LD ++ ++L  MY + G +     V  S   +++ A+ + I G A NG       L++ M
Sbjct: 122 LDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMM 181

Query: 232 KSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGL 291
           K  G  P+ I+++ VLS+CS L    +G    H+     G    +   + ++ +  + G 
Sbjct: 182 KISGCRPNKITFVTVLSSCSDLAIRGQG-QQIHAEAIKIGASSVVAVVSSLISMYSKCGC 240

Query: 292 LEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNI 351
           L +A    +      D V+W +++ A   H   +    + N + E           L+ +
Sbjct: 241 LGDAAKAFSERE-DEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLL 299

Query: 352 YV 353
           Y 
Sbjct: 300 YA 301



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/239 (21%), Positives = 96/239 (40%), Gaps = 41/239 (17%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
            +K     D+ V +SL   Y   G+++D   V       ++V+WN++I G  +NG     
Sbjct: 115 TIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETV 174

Query: 62  LKLFDKMP----QRNDVSWNSILGG----------------------------------- 82
           L L+  M     + N +++ ++L                                     
Sbjct: 175 LYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISM 234

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM-QSLDLEPNSAI 141
             + G + DA + F++      V W  +IS +  +G+  EA+ LF  M +  ++E N   
Sbjct: 235 YSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVA 294

Query: 142 LVSLLSACAQLGALDYGNWVYS-YIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
            ++LL AC+  G  D G  ++   ++K   K        ++D+  + G +D A  +  S
Sbjct: 295 FLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRS 353


>gi|115486527|ref|NP_001068407.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|108864631|gb|ABG22570.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645629|dbj|BAF28770.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|215694601|dbj|BAG89792.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215701272|dbj|BAG92696.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 610

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 199/517 (38%), Positives = 299/517 (57%), Gaps = 7/517 (1%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVC-----GRVRDARWVFDESDDLDVVSWNSMINGYVRN 55
           M+  ++   D FV +S+   ++       GR   A +V    +  DVV  +S+++ Y + 
Sbjct: 95  MLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVVK-SSLVDMYCKC 153

Query: 56  GEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFA 115
           G   +G K+FD M  +N V W +++ G    G  ++A ++F  MP R+L +W  LISG  
Sbjct: 154 GSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLV 213

Query: 116 QNGRPKEALALFREMQSLDLEPNSAILVSL-LSACAQLGALDYGNWVYSYIQKKCIKLDS 174
             G    A+ LF EM+   +  + A ++S+ +   A L A   G  ++    +     + 
Sbjct: 214 NTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLHGSTMRLGFLSNM 273

Query: 175 ILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK 234
           I+  ALIDMY+KC  I  A +VF     +DV ++T+ + G A +G + EA  L++ M   
Sbjct: 274 IVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLA 333

Query: 235 GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEE 294
           G  P+ ++++ ++ ACSH G V+KG   F SM + +GI P L HY C +DLL R+G L E
Sbjct: 334 GAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLE 393

Query: 295 AENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVE 354
           AE  + +MP +PD   WG LL AC  +++AEM  RI + L+E        YILLSN+Y  
Sbjct: 394 AEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLELRPKDSSTYILLSNVYAV 453

Query: 355 TLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKK 414
             K ++  +VRK M   +I++ PG S IE       F AG+   +  +EI  F EE+V +
Sbjct: 454 NGKWDSVAKVRKCMIGLEIRKEPGYSWIEAGREFRLFHAGEVPLDVREEIMVFLEEMVLE 513

Query: 415 IKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDC 474
           ++  GY  +T SVM D+EE EKE  +  HSE+LA+AFGLI + PGSVIR+VKN+R+C DC
Sbjct: 514 MRKRGYVPDTSSVMHDLEESEKEHHLFLHSERLAVAFGLIKSPPGSVIRVVKNLRVCVDC 573

Query: 475 HSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           H+ MKL+S++  RKI +RD   +HHFE G CSC E+W
Sbjct: 574 HTVMKLISEITHRKIVVRDSSRFHHFEGGKCSCSEFW 610



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 90/167 (53%), Gaps = 5/167 (2%)

Query: 89  VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD-LEPNSAILVSLLS 147
           + DA  +F++ P+R +  +  L++  + +  P+ AL + R M S D L P+  ++ S+ S
Sbjct: 54  LPDALHLFDETPRRDIYIYSSLLTAVSHSASPELALPILRCMLSADALHPDHFVISSVAS 113

Query: 148 ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSA 207
             A+L +   G  ++++        D ++ ++L+DMY KCGS D   +VF S   K+   
Sbjct: 114 VFARLRSRRLGRQLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVV 173

Query: 208 YTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
           +T+ + G A NG S EA +LF +M  + +     ++ A++S   + G
Sbjct: 174 WTALVSGYASNGRSEEALQLFRSMPGRNL----FAWTALISGLVNTG 216


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 192/530 (36%), Positives = 310/530 (58%), Gaps = 19/530 (3%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + +K+SF   +   N+L+  YS CG +  A  VF++  + +VVSW SMI GY R+G    
Sbjct: 276 LAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDG 335

Query: 61  GLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWV----VLIS 112
            + L  +M +     + V+  SIL    R GS+D+   V + +   ++ S +     L+ 
Sbjct: 336 AIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMD 395

Query: 113 GFAQNGRPKEALALFREMQSLD----------LEPNSAILVSLLSACAQLGALDYGNWVY 162
            +A+ G  + A ++F  M   D          L+P+S  +  +L ACA L AL+ G  ++
Sbjct: 396 MYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMACILPACASLSALERGKEIH 455

Query: 163 SYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSI 222
            YI +     D  +  AL+D+Y KCG + LA  +F     KD+ ++T  I G  M+G+  
Sbjct: 456 GYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGN 515

Query: 223 EAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACM 282
           EA   F  M+  GI PD +S+I++L ACSH G +E+G+ +F+ M +   I+P+L+HYACM
Sbjct: 516 EAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACM 575

Query: 283 VDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD 342
           VDLL R G L +A  FI ++P+ PD  IWG LL  CR++ + E+ +++   + E +  + 
Sbjct: 576 VDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENT 635

Query: 343 GRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDR-SHEKT 401
           G Y+LL+NIY E  K E  + +R+ + K+ +++ PGCS IE+ G V+ F++G+  SH  +
Sbjct: 636 GYYVLLANIYAEAEKREEVKRMREKIGKKGLRKNPGCSWIEIKGRVNLFVSGNNSSHPHS 695

Query: 402 QEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSV 461
           ++I    +++ +K+K  GY  +T+  + + +E +KE  +  HSEKLA+AFGL+   P   
Sbjct: 696 KKIESLLKKMRRKMKEEGYFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKT 755

Query: 462 IRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           IR+ KN+R+C DCH   K +SK  +R+I +RD   +HHF+DG CSC  +W
Sbjct: 756 IRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKDGYCSCRGFW 805



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 96/369 (26%), Positives = 181/369 (49%), Gaps = 28/369 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++  NS   D  +   L+ FY+ CG +++ R VFD  +  +V  WN M++ Y + G+  E
Sbjct: 124 IIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKE 183

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
            + LF  M ++            +     + A  +F+++  R ++SW  +ISG+  NG  
Sbjct: 184 SICLFKIMVEKG-----------IEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLT 232

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
           +  L ++++M  L ++ + A ++S+L  CA  G L  G  V+S   K   +        L
Sbjct: 233 ERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTL 292

Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           +DMY+KCG +D A++VF   G+++V ++TS I G   +G S  A  L + M+ +G+  D 
Sbjct: 293 LDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDV 352

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
           ++  ++L AC+  G ++ G    H     + +   L     ++D+  + G +E A +  +
Sbjct: 353 VAITSILHACARSGSLDNG-KDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFS 411

Query: 301 SM-------------PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYI- 346
           +M              +KPD+     +L AC      E G+ I   ++ +  + D R++ 
Sbjct: 412 TMVVKDIISWNTMVGELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSD-RHVA 470

Query: 347 -LLSNIYVE 354
             L ++YV+
Sbjct: 471 NALVDLYVK 479



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 73/170 (42%), Gaps = 18/170 (10%)

Query: 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD 173
           F Q G  + A+ L    Q  +LE  +    S+L  CA L +L  G  V+S I+   + +D
Sbjct: 76  FCQLGDLENAMELVCMCQKSELETKT--YGSVLQLCAGLKSLTDGKKVHSIIKSNSVGVD 133

Query: 174 SILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKS 233
             L   L+  YA CG +    +VF +   K+V  +   +   A  G   E+  LF+ M  
Sbjct: 134 EALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVE 193

Query: 234 KGIS---PDS-------------ISYIAVLSACSHLGWVEKGFYYFHSMF 267
           KGI    P+S             IS+ +++S     G  E+G   +  M 
Sbjct: 194 KGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMM 243


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  368 bits (944), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 206/558 (36%), Positives = 307/558 (55%), Gaps = 47/558 (8%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDD--LDVVSWNSMINGYVRNGEI 58
           +   + F   V VKNSL+ +YS  G + +A  VF+   +   D VSWNSMI  Y ++   
Sbjct: 163 LAFSSGFDSYVSVKNSLLTYYSKNGILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRG 222

Query: 59  LEGLKLFDKMPQRN-DVSWNSILGGLVRFGSVDDAC------------------------ 93
           L+ L L+  M  R  ++   ++   L  F  V+D                          
Sbjct: 223 LKALALYRDMVHRGFEIDMFTLASVLTTFSCVEDLSGGLQFHAKAIKTGFNKNRHVGSGL 282

Query: 94  ---------------RVFNQMPKRSLVSWVVLISGFAQNGRPK-EALALFREMQSLDLEP 137
                          +VF ++    LV W  +ISG++QN     EAL  FR+MQ     P
Sbjct: 283 IDMYAKCGAGMSESRKVFEEICGSDLVVWNTMISGYSQNKELSVEALECFRQMQRAGYWP 342

Query: 138 NSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI-LCAALIDMYAKCGSIDLAMQV 196
           +    V  +SAC+ L +   G   ++   K  I  + I +  AL+ MY+KCG++  A ++
Sbjct: 343 DDCSFVCAISACSNLSSPSQGKQFHALAMKSEIPSNQISVNNALVTMYSKCGNLQDARKL 402

Query: 197 FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWV 256
           F      +     S I G A +G   E+  LFE M +  I+P SI+ +++LSAC+H G V
Sbjct: 403 FQRMPQHNTVTLNSIIAGYAQHGIGTESLNLFEQMLAASIAPTSITLVSILSACAHTGRV 462

Query: 257 EKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLG 316
           E+G  YF+ M D+ GI+PE +HY+CM+DLLGRAG L EAE  I +MP  P +  W  LLG
Sbjct: 463 EEGKKYFNMMKDIFGIEPEAEHYSCMIDLLGRAGKLSEAERLIDTMPFSPGSAAWAALLG 522

Query: 317 ACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRA 376
           ACR + N E+ ++  N  ++ +  +   YI+L+++Y    K E A  +RK MR R I++ 
Sbjct: 523 ACRKYGNMELAEKAANQFLQLEPTNAVPYIMLASMYSAARKWEEAARIRKLMRDRGIRKK 582

Query: 377 PGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMF---DIEE 433
           PGCS IEL+  VH F+A D SH + +EI+ + +E+  K+K  GY  + R       +  E
Sbjct: 583 PGCSWIELNKRVHVFVAEDNSHPRIKEIHMYLDEMFVKMKRAGYVPDVRWAFVKDDETGE 642

Query: 434 EEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRD 493
           +EKE ++ +HSEKLA+AFGL+ TK G  + +VKN+RIC DCH+A+K +S + +RKI++RD
Sbjct: 643 QEKEIMLAHHSEKLAVAFGLLFTKHGEPLLVVKNLRICGDCHNAIKFMSAIARRKITVRD 702

Query: 494 RKHYHHFEDGSCSCLEYW 511
              +H FEDG CSC +YW
Sbjct: 703 AYRFHCFEDGRCSCGDYW 720



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 153/340 (45%), Gaps = 51/340 (15%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           +VF  N+LI  Y+    +  A  +FD+    D+VS+N++IN Y   G+ L  L LF +M 
Sbjct: 73  NVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMR 132

Query: 70  QR-----------------NDVSW--------------------NSILGGLVRFGSVDDA 92
           +                  N V                      NS+L    + G +++A
Sbjct: 133 EMGLVMDGFTFSGVITACCNHVGLIRQLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEA 192

Query: 93  CRVFNQMPK--RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
             VFN M +  R  VSW  +I  + Q+ R  +ALAL+R+M     E +   L S+L+  +
Sbjct: 193 EMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFS 252

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS-IDLAMQVFHSYGDKDVSAYT 209
            +  L  G   ++   K     +  + + LIDMYAKCG+ +  + +VF      D+  + 
Sbjct: 253 CVEDLSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWN 312

Query: 210 SAIFGLAMNGH-SIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD 268
           + I G + N   S+EA E F  M+  G  PD  S++  +SACS+L    +G   FH++  
Sbjct: 313 TMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQG-KQFHAL-- 369

Query: 269 VHGIKPELDHYA-----CMVDLLGRAGLLEEAENFIASMP 303
              +K E+          +V +  + G L++A      MP
Sbjct: 370 --AMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMP 407



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/322 (21%), Positives = 133/322 (41%), Gaps = 50/322 (15%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +K+      ++ N  I  YS C  +  A   F+++ + +V S+N++I  Y +   I    
Sbjct: 35  LKSLIPSSTYLSNHFILLYSKCNLLTTAHHAFNQTHEPNVFSFNALIAAYAKESLIHVAH 94

Query: 63  KLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKE 122
            LFD++PQ + VS+N+                               LI+ +A  G    
Sbjct: 95  HLFDQIPQPDLVSFNT-------------------------------LINAYADRGDTLS 123

Query: 123 ALALFREMQSLDLEPNSAILVSLLSACA-------QLGALDYGNWVYSYIQKKCIKLDSI 175
           AL+LF EM+ + L  +      +++AC        QL +L + +   SY+  K       
Sbjct: 124 ALSLFGEMREMGLVMDGFTFSGVITACCNHVGLIRQLHSLAFSSGFDSYVSVK------- 176

Query: 176 LCAALIDMYAKCGSIDLAMQVFHSYGD--KDVSAYTSAIFGLAMNGHSIEAFELFENMKS 233
              +L+  Y+K G ++ A  VF+  G+  +D  ++ S I     +   ++A  L+ +M  
Sbjct: 177 --NSLLTYYSKNGILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVH 234

Query: 234 KGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLE 293
           +G   D  +  +VL+  S +  +  G   FH+     G        + ++D+  + G   
Sbjct: 235 RGFEIDMFTLASVLTTFSCVEDLSGGL-QFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGM 293

Query: 294 EAENFIASMPMKPDNVIWGTLL 315
                +       D V+W T++
Sbjct: 294 SESRKVFEEICGSDLVVWNTMI 315



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 6/146 (4%)

Query: 179 ALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISP 238
           ALI  YAK   I +A  +F      D+ ++ + I   A  G ++ A  LF  M+  G+  
Sbjct: 79  ALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMREMGLVM 138

Query: 239 DSISYIAVLSA-CSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAEN 297
           D  ++  V++A C+H+G + +     HS+    G    +     ++    + G+LEEAE 
Sbjct: 139 DGFTFSGVITACCNHVGLIRQ----LHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAEM 194

Query: 298 FIASMPMK-PDNVIWGTLLGACRVHR 322
               M  +  D V W +++ A   H+
Sbjct: 195 VFNGMGEEVRDEVSWNSMIVAYGQHK 220


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 200/547 (36%), Positives = 305/547 (55%), Gaps = 51/547 (9%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           +V + N++I     C  V +AR +F+   D D ++W +M+ G+ +NG   E L++F +M 
Sbjct: 205 NVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMR 264

Query: 70  QR----NDVSWNSILGGLVRFGSVDDA----------------------------CR--- 94
            +    +  ++ SIL       +++                              CR   
Sbjct: 265 FQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIK 324

Query: 95  ----VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
               VF +M  ++++SW  LI G+ QNG  +EA+ +F EMQ   ++P+   L S++S+CA
Sbjct: 325 LAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCA 384

Query: 151 QLGALDYGNWVYSYIQKKCIKLDS------ILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
            L +L+ G       Q  C+ L S       +  AL+ +Y KCGSI+ A ++F      D
Sbjct: 385 NLASLEEG------AQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHD 438

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
             ++T+ + G A  G + E  +LFE M +KG+ PD +++I VLSACS  G+VEKG  YFH
Sbjct: 439 QVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFH 498

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
           SM   HGI P  DHY CM+DL  R+G L+EAE FI  MPM PD + WGTLL ACR+  + 
Sbjct: 499 SMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDM 558

Query: 325 EMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIEL 384
           E+G+     L+E D  +   Y+LL +++    +     ++R+ MR R++K+ PGCS I+ 
Sbjct: 559 EIGKWAAENLLEIDPQNPASYVLLCSMHAAKGQWNEVAQLRRGMRDRQVKKEPGCSWIKY 618

Query: 385 DGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHS 444
              VH F A D+SH  ++ IY+  E +  K+   GY  +  SV+ D+ + +K  ++ +HS
Sbjct: 619 KNKVHIFSADDQSHPCSKGIYEKLEWLNSKMLEEGYKPDVSSVLHDVADTDKVHMVSHHS 678

Query: 445 EKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGS 504
           EKLA+AFGLI       IRIVKN+R+C DCH+A K +SK+  R I +RD   +H F DG 
Sbjct: 679 EKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSDGV 738

Query: 505 CSCLEYW 511
           CSC ++W
Sbjct: 739 CSCGDFW 745



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 86/270 (31%), Positives = 149/270 (55%), Gaps = 2/270 (0%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           + +++ Y +   + +  + FD++  +N V +N+++ GL+R   V++A R+F  M  R  +
Sbjct: 179 SPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSI 238

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           +W  +++GF QNG   EAL +FR M+   +  +     S+L+AC  L AL+ G  +++YI
Sbjct: 239 TWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYI 298

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
            +     +  + +AL+DMY+KC SI LA  VF     K++ ++T+ I G   NG S EA 
Sbjct: 299 IRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAV 358

Query: 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL 285
            +F  M+  GI PD  +  +V+S+C++L  +E+G   FH +  V G+   +     +V L
Sbjct: 359 RVFSEMQRDGIDPDDYTLGSVISSCANLASLEEG-AQFHCLALVSGLMHYITVSNALVTL 417

Query: 286 LGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
            G+ G +E+A      M    D V W  L+
Sbjct: 418 YGKCGSIEDAHRLFDEMSFH-DQVSWTALV 446



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/380 (22%), Positives = 159/380 (41%), Gaps = 70/380 (18%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N ++  Y + G      ++FD MP  N  ++N++L  L     + D   +F  M +R +V
Sbjct: 45  NHLLTAYGKAGRHARARRVFDAMPHPNLFTYNALLSTLAHARLLSDMEALFASMTQRDIV 104

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLD--LEPNSAILVSLLSACAQLGALDYGNWVYS 163
           S+  +I+GF+  G   +A+ ++  +   D  + P+   + +++ A + LG    G   + 
Sbjct: 105 SYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASALGDRALGKQFHC 164

Query: 164 YIQKKCIKLDSILCAALIDMYAK-------------------------------CGSIDL 192
            I +     ++ + + L+DMYAK                               C  ++ 
Sbjct: 165 QILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEE 224

Query: 193 AMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSH 252
           A ++F    D+D   +T+ + G   NG   EA E+F  M+ +GI+ D  ++ ++L+AC  
Sbjct: 225 ARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGA 284

Query: 253 LGWVEKG----FYYFHSMFD---------------VHGIK-----------PELDHYACM 282
           L  +E+G     Y   + +D                  IK             +  +  +
Sbjct: 285 LSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTAL 344

Query: 283 VDLLGRAGLLEEAENFIASMP---MKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQ 339
           +   G+ G  EEA    + M    + PD+   G+++ +C    + E G +   + + S  
Sbjct: 345 IVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGL 404

Query: 340 NHDGRYILLSNIYVETLKGE 359
            H   YI +SN  V TL G+
Sbjct: 405 MH---YITVSNALV-TLYGK 420


>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
          Length = 601

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 187/471 (39%), Positives = 279/471 (59%), Gaps = 40/471 (8%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +VK    +D FV+NSL+  ++ CG V  +R +F E+   DVVSW ++ING +RNG  +E 
Sbjct: 129 IVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEA 188

Query: 62  LKLFDKMP-----------------------------------QRNDVSWNSILGGLV-- 84
           L+ F +M                                    +   V W+  +G  +  
Sbjct: 189 LECFVEMRSSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVD 248

Query: 85  ---RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G  DDA +VFN+MP R+LVSW  LI+G+ Q  R KEAL +F+EM    +EPN + 
Sbjct: 249 MYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQST 308

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           + S L+ACAQLG+LD G W++ Y+ +  + L+S L  AL+DMY+KCG +D A+ VF    
Sbjct: 309 VTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLP 368

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
            KDV  +T+ I GLAM G ++ +  LF  M    + P+ ++++ VLSAC+H G V++G  
Sbjct: 369 AKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLE 428

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            F  M   + ++P +DHY CMVDLLGRAG LEEA  FI SMPM+P   +WG L   C +H
Sbjct: 429 LFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFSGCMIH 488

Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
           +  E+G+ IGN LI+   +H GRYILL+N+Y    K E A  VR+ M+ + + ++PGCS 
Sbjct: 489 KAFELGEHIGNHLIKLQPHHSGRYILLANLYSRCQKWEAAANVRRLMKGKGVDKSPGCSW 548

Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIE 432
           IE++GV+HEF+A D+SH ++  +Y   E +  ++K   Y +++  + F I+
Sbjct: 549 IEVNGVIHEFIAFDKSHTESINVYMMLESVSAQLKLATYALDSNLLTFTID 599



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 124/251 (49%), Gaps = 19/251 (7%)

Query: 95  VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA 154
           +F+++    +  W  +I GF+ + +P+  L  +  +++  + P+      LL A ++L  
Sbjct: 60  LFDRLATPYIFLWNTIIRGFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRN 119

Query: 155 LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFG 214
            +   + Y++I K  +  D+ +  +L+  +A CG +D + ++F     KDV ++T+ I G
Sbjct: 120 ENPFQF-YAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALING 178

Query: 215 LAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL------GWVEKGFYYFHSMFD 268
              NG ++EA E F  M+S G+  D ++ ++VL A + L       WV  GFY       
Sbjct: 179 CLRNGRAVEALECFVEMRSSGVEVDEVTIVSVLCAAAMLRDVWFGRWVH-GFY------- 230

Query: 269 VHGIKPELDHY--ACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL-GACRVHRNAE 325
           V   +   D Y  + +VD+  + G  ++A      MP + + V WG L+ G  + +R  E
Sbjct: 231 VESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTR-NLVSWGALIAGYVQCNRYKE 289

Query: 326 MGQRIGNMLIE 336
             +    M+IE
Sbjct: 290 ALKVFQEMIIE 300


>gi|356529693|ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Glycine max]
          Length = 676

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 199/542 (36%), Positives = 309/542 (57%), Gaps = 41/542 (7%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D FV ++L+  Y+   ++RDA  VF    + DVV + ++I GY ++G   E LK+F+ M 
Sbjct: 136 DGFVASALVDMYAKFDKMRDAHLVFRRVLEKDVVLFTALIVGYAQHGLDGEALKIFEDMV 195

Query: 70  QRN-------------------DVSWNSILGGLV--------------------RFGSVD 90
            R                    D+    ++ GLV                    R   ++
Sbjct: 196 NRGVKPNEYTLACILINCGNLGDLVNGQLIHGLVVKSGLESVVASQTSLLTMYSRCNMIE 255

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           D+ +VFNQ+   + V+W   + G  QNGR + A+++FREM    + PN   L S+L AC+
Sbjct: 256 DSIKVFNQLDYANQVTWTSFVVGLVQNGREEVAVSIFREMIRCSISPNPFTLSSILQACS 315

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
            L  L+ G  +++   K  +  +    AALI++Y KCG++D A  VF    + DV A  S
Sbjct: 316 SLAMLEVGEQIHAITMKLGLDGNKYAGAALINLYGKCGNMDKARSVFDVLTELDVVAINS 375

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I+  A NG   EA ELFE +K+ G+ P+ +++I++L AC++ G VE+G   F S+ + H
Sbjct: 376 MIYAYAQNGFGHEALELFERLKNMGLVPNGVTFISILLACNNAGLVEEGCQIFASIRNNH 435

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
            I+  +DH+ CM+DLLGR+  LEEA   I  +   PD V+W TLL +C++H   EM +++
Sbjct: 436 NIELTIDHFTCMIDLLGRSRRLEEAAMLIEEVR-NPDVVLWRTLLNSCKIHGEVEMAEKV 494

Query: 331 GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHE 390
            + ++E      G +ILL+N+Y    K     E++ T+R  K+K++P  S +++D  VH 
Sbjct: 495 MSKILELAPGDGGTHILLTNLYASAGKWNQVIEMKSTIRDLKLKKSPAMSWVDVDREVHT 554

Query: 391 FLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALA 450
           F+AGD SH ++ EI++    ++KK+K  GYN  TR V+ D++EE+K + + YHSEKLA+A
Sbjct: 555 FMAGDLSHPRSLEIFEMLHGLMKKVKTLGYNPNTRFVLQDLDEEKKISSLYYHSEKLAIA 614

Query: 451 FGLICT-KPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLE 509
           + L  T    + IRI KN+R+C DCHS +K VS +  R I  RD K +HHF+ G CSC +
Sbjct: 615 YALWKTIGRTTTIRIFKNLRVCGDCHSWIKFVSLLTGRDIIARDSKRFHHFKGGLCSCKD 674

Query: 510 YW 511
           YW
Sbjct: 675 YW 676



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 163/338 (48%), Gaps = 46/338 (13%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K+ F+Y  F+ + LI  Y  CG + +AR +FDE     +V+WNSMI+ ++ +G+  E 
Sbjct: 27  VIKSGFSYS-FLGHKLIDGYIKCGSLAEARKLFDELPSRHIVTWNSMISSHISHGKSKEA 85

Query: 62  LKLFDKM------PQRNDVSWNS-------------------------ILGGLV------ 84
           ++ +  M      P     S  S                         +L G V      
Sbjct: 86  VEFYGNMLMEGVLPDAYTFSAISKAFSQLGLIRHGQRAHGLAVVLGLEVLDGFVASALVD 145

Query: 85  ---RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              +F  + DA  VF ++ ++ +V +  LI G+AQ+G   EAL +F +M +  ++PN   
Sbjct: 146 MYAKFDKMRDAHLVFRRVLEKDVVLFTALIVGYAQHGLDGEALKIFEDMVNRGVKPNEYT 205

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCA--ALIDMYAKCGSIDLAMQVFHS 199
           L  +L  C  LG L  G  ++  + K    L+S++ +  +L+ MY++C  I+ +++VF+ 
Sbjct: 206 LACILINCGNLGDLVNGQLIHGLVVKS--GLESVVASQTSLLTMYSRCNMIEDSIKVFNQ 263

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
               +   +TS + GL  NG    A  +F  M    ISP+  +  ++L ACS L  +E G
Sbjct: 264 LDYANQVTWTSFVVGLVQNGREEVAVSIFREMIRCSISPNPFTLSSILQACSSLAMLEVG 323

Query: 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAEN 297
               H++    G+       A +++L G+ G +++A +
Sbjct: 324 -EQIHAITMKLGLDGNKYAGAALINLYGKCGNMDKARS 360



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 1/116 (0%)

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           SL++  A   +L     V++ + K      S L   LID Y KCGS+  A ++F     +
Sbjct: 6   SLIAQSAHTKSLTTLRAVHTNVIKSGFSY-SFLGHKLIDGYIKCGSLAEARKLFDELPSR 64

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
            +  + S I     +G S EA E + NM  +G+ PD+ ++ A+  A S LG +  G
Sbjct: 65  HIVTWNSMISSHISHGKSKEAVEFYGNMLMEGVLPDAYTFSAISKAFSQLGLIRHG 120


>gi|225424875|ref|XP_002269101.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Vitis vinifera]
          Length = 607

 Score =  367 bits (943), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 186/442 (42%), Positives = 286/442 (64%), Gaps = 8/442 (1%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136
           NS++        +D A  VF++M +RSLVSW V+I  F + G    AL LF EMQ    E
Sbjct: 167 NSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFDAALNLFGEMQKF-FE 225

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK---LDSILCAALIDMYAKCGSIDLA 193
           P+   + S+ +ACA +G+L  G W + ++ KK       D +L  +L+DMY KCGS++LA
Sbjct: 226 PDGYTIQSIANACAGMGSLSLGMWAHVFLLKKFDADRVNDVLLNTSLVDMYCKCGSLELA 285

Query: 194 MQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM-KSKGISPDSISYIAVLSACSH 252
           +Q+FH    +DV+++ S I G + +G    A E F  M +++ + P++I+++ VLSAC+H
Sbjct: 286 LQLFHRMPKRDVTSWNSMILGFSTHGEVAAALEYFGCMVRTEKLMPNAITFVGVLSACNH 345

Query: 253 LGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWG 312
            G V +G  YF  M   + IKPEL+HY C+VDLL RAGL++EA + +++MPM+PD VIW 
Sbjct: 346 GGLVSEGRRYFDVMVTEYKIKPELEHYGCLVDLLARAGLIDEALDVVSNMPMRPDLVIWR 405

Query: 313 TLLGAC-RVHRNAEMGQRIGNMLIESDQN-HDGRYILLSNIYVETLKGENAEEVRKTMRK 370
           +LL AC + +   E+ + +   ++E++     G Y+LLS +Y    +  +   VRK M  
Sbjct: 406 SLLDACCKQNAGVELSEEMARRVLEAEGGVCSGVYVLLSRVYASASRWNDVGMVRKLMTD 465

Query: 371 RKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVET-RSVMF 429
           + + + PGCS IE+DGV HEF AGD SH +T+EIY   + I ++++  GY+ ++ ++ M 
Sbjct: 466 KGVVKEPGCSSIEIDGVAHEFFAGDTSHPQTEEIYSALDVIEERVERVGYSPDSSQAPMV 525

Query: 430 DIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKI 489
           D   + K+  +  HSE+LA+AFGL+ TKPG  IRI KN+R+C++CH   KL+S+VF R+I
Sbjct: 526 DETIDGKQYSLRLHSERLAIAFGLLKTKPGMPIRIFKNLRVCNNCHQVTKLISRVFNREI 585

Query: 490 SIRDRKHYHHFEDGSCSCLEYW 511
            +RDR  +HHF+DG+CSC++YW
Sbjct: 586 IVRDRIRFHHFKDGACSCMDYW 607



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 112/238 (47%), Gaps = 43/238 (18%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K  F  DV++ NSL+ FY+ C R+  A+ VFD   +  +VSWN +I+ +VR GE    
Sbjct: 154 ILKLGFDSDVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFDAA 213

Query: 62  LKLFDKMPQ----------------------------------------RNDVSWN-SIL 80
           L LF +M +                                         NDV  N S++
Sbjct: 214 LNLFGEMQKFFEPDGYTIQSIANACAGMGSLSLGMWAHVFLLKKFDADRVNDVLLNTSLV 273

Query: 81  GGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM-QSLDLEPNS 139
               + GS++ A ++F++MPKR + SW  +I GF+ +G    AL  F  M ++  L PN+
Sbjct: 274 DMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFSTHGEVAAALEYFGCMVRTEKLMPNA 333

Query: 140 AILVSLLSACAQLGALDYGNWVYS-YIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
              V +LSAC   G +  G   +   + +  IK +      L+D+ A+ G ID A+ V
Sbjct: 334 ITFVGVLSACNHGGLVSEGRRYFDVMVTEYKIKPELEHYGCLVDLLARAGLIDEALDV 391



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 111/247 (44%), Gaps = 11/247 (4%)

Query: 83  LVRFGSVDD---ACRVFNQMPKRSLVSWVVLISGFAQNG-RPKEALALF-REMQSLDLEP 137
           ++ F S+ D   A RVF+Q+   +   W  LI   A++  R + A+AL+ R ++   +  
Sbjct: 67  ILHFSSLHDLRYAFRVFHQIENPNSFMWNALIRACARSTDRKQHAIALYHRMLEQGSVMQ 126

Query: 138 NSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVF 197
           +      +L ACA L AL  G  +++ I K     D  +  +L+  YA C  +D A  VF
Sbjct: 127 DKHTFPFVLKACAYLFALSEGEQIHAQILKLGFDSDVYINNSLVHFYATCDRLDFAKGVF 186

Query: 198 HSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVE 257
               ++ + ++   I      G    A  LF  M+ K   PD  +  ++ +AC+ +G + 
Sbjct: 187 DRMSERSLVSWNVVIDAFVRFGEFDAALNLFGEMQ-KFFEPDGYTIQSIANACAGMGSLS 245

Query: 258 KGFY---YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTL 314
            G +   +    FD   +   L + + +VD+  + G LE A      MP K D   W ++
Sbjct: 246 LGMWAHVFLLKKFDADRVNDVLLNTS-LVDMYCKCGSLELALQLFHRMP-KRDVTSWNSM 303

Query: 315 LGACRVH 321
           +     H
Sbjct: 304 ILGFSTH 310


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  367 bits (943), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 192/530 (36%), Positives = 310/530 (58%), Gaps = 19/530 (3%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + +K+SF   +   N+L+  YS CG +  A  VF++  + +VVSW SMI GY R+G    
Sbjct: 138 LAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDG 197

Query: 61  GLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWV----VLIS 112
            + L  +M +     + V+  SIL    R GS+D+   V + +   ++ S +     L+ 
Sbjct: 198 AIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMD 257

Query: 113 GFAQNGRPKEALALFREMQSLD----------LEPNSAILVSLLSACAQLGALDYGNWVY 162
            +A+ G  + A ++F  M   D          L+P+S  +  +L ACA L AL+ G  ++
Sbjct: 258 MYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMACILPACASLSALERGKEIH 317

Query: 163 SYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSI 222
            YI +     D  +  AL+D+Y KCG + LA  +F     KD+ ++T  I G  M+G+  
Sbjct: 318 GYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGN 377

Query: 223 EAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACM 282
           EA   F  M+  GI PD +S+I++L ACSH G +E+G+ +F+ M +   I+P+L+HYACM
Sbjct: 378 EAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACM 437

Query: 283 VDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD 342
           VDLL R G L +A  FI ++P+ PD  IWG LL  CR++ + E+ +++   + E +  + 
Sbjct: 438 VDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENT 497

Query: 343 GRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDR-SHEKT 401
           G Y+LL+NIY E  K E  + +R+ + K+ +++ PGCS IE+ G V+ F++G+  SH  +
Sbjct: 498 GYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGRVNLFVSGNNSSHPHS 557

Query: 402 QEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSV 461
           ++I    +++ +K+K  GY  +T+  + + +E +KE  +  HSEKLA+AFGL+   P   
Sbjct: 558 KKIESLLKKMRRKMKEEGYFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKT 617

Query: 462 IRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           IR+ KN+R+C DCH   K +SK  +R+I +RD   +HHF+DG CSC  +W
Sbjct: 618 IRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKDGYCSCRGFW 667



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 176/353 (49%), Gaps = 28/353 (7%)

Query: 17  LIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSW 76
           L+ FY+ CG +++ R VFD  +  +V  WN M++ Y + G+  E + LF  M ++     
Sbjct: 2   LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKG---- 57

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136
                  +     + A  +F+++  R ++SW  +ISG+  NG  +  L ++++M  L ++
Sbjct: 58  -------IEGKRSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGID 110

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
            + A ++S+L  CA+ G L  G  V+S   K   +        L+DMY+KCG +D A++V
Sbjct: 111 VDLATIISVLVGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRV 170

Query: 197 FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWV 256
           F   G+++V ++TS I G   +G S  A  L + M+ +G+  D ++  ++L AC+  G +
Sbjct: 171 FEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSL 230

Query: 257 EKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-------------P 303
           + G    H     + +   L     ++D+  + G +E A +  ++M              
Sbjct: 231 DNG-KDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGE 289

Query: 304 MKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYI--LLSNIYVE 354
           +KPD+     +L AC      E G+ I   ++ +  + D R++   L ++YV+
Sbjct: 290 LKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSD-RHVANALVDLYVK 341


>gi|296088738|emb|CBI38188.3| unnamed protein product [Vitis vinifera]
          Length = 744

 Score =  367 bits (943), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 201/572 (35%), Positives = 308/572 (53%), Gaps = 70/572 (12%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           + FV  +LI  YSVCGRV  AR VFD     D+VSW  M+  +  N    E LKLF +M 
Sbjct: 173 NAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMR 232

Query: 70  ----QRNDVSWNSILG---GLVRF--------------------------------GSVD 90
               + N+ ++ S+     GL  F                                G +D
Sbjct: 233 MVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDID 292

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           DA R F ++PK+ ++ W  +I+ +AQ+ + KEA+ +F +M+   + PN     S+L ACA
Sbjct: 293 DARRAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACA 352

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
            +  L+ GN ++ ++ K  +  D  +  AL+D+YAKCG ++ +M++F     ++   + +
Sbjct: 353 TMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNT 412

Query: 211 AIFGLAMNGHSIEAFELFENM-------------------------------KSKGISPD 239
            I G    G   +A  LF NM                                S  + PD
Sbjct: 413 VIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKPD 472

Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI 299
            ++++ VLSAC++ G +++G  YF SM   HGI+P ++HY CMV LLGR G L++A   I
Sbjct: 473 KLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLI 532

Query: 300 ASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGE 359
             +P +P  ++W  LLGAC +H + E+G+     ++E +      ++LLSN+Y    + +
Sbjct: 533 DEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQDKATHVLLSNMYATAKRWD 592

Query: 360 NAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYG 419
           N   VRK M+++ +K+ PG S IE  G VH F  GD SH + + I    E +  K K  G
Sbjct: 593 NVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVINGMLEWLHMKTKKAG 652

Query: 420 YNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMK 479
           Y      V+ D+E+EEKE ++  HSE+LAL+FG+I T  GS IRI+KN+RIC DCH+A+K
Sbjct: 653 YIPNYNVVLLDVEDEEKERLLWVHSERLALSFGIIRTPSGSPIRIMKNLRICVDCHAAIK 712

Query: 480 LVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            +SKV +R+I +RD   +HHF++G CSC +YW
Sbjct: 713 CISKVVQREIVVRDINRFHHFQEGLCSCGDYW 744



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 125/248 (50%), Gaps = 14/248 (5%)

Query: 75  SWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD 134
           +WN +L   V+   + DA ++F++MP+R+ +S+V LI G+A++ R  EA+ LF  +    
Sbjct: 75  AWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREG 134

Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
            E N  +  ++L         + G  +++ I K   + ++ +  ALID Y+ CG +D+A 
Sbjct: 135 HELNPFVFTTILKLLVSTDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAR 194

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
           +VF     KD+ ++T  +   A N    EA +LF  M+  G  P++ ++ +V  AC    
Sbjct: 195 EVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKAC---- 250

Query: 255 WVEKGFYYFHSMFDVHGI----KPELDHY--ACMVDLLGRAGLLEEAENFIASMPMKPDN 308
               G   F     VHG     + ELD Y    ++DL  ++G +++A      +P K D 
Sbjct: 251 ---LGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARRAFEEIP-KKDV 306

Query: 309 VIWGTLLG 316
           + W  ++ 
Sbjct: 307 IPWSFMIA 314



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 127/292 (43%), Gaps = 51/292 (17%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +K+ +  D++V  +L+  Y+  G + DAR  F+E    DV+ W+ MI  Y ++ +  E +
Sbjct: 267 LKSRYELDLYVGVALLDLYTKSGDIDDARRAFEEIPKKDVIPWSFMIARYAQSDQSKEAV 326

Query: 63  KLFDKMPQR----NDVSWNSILG------GL----------------------------- 83
           ++F +M Q     N  ++ S+L       GL                             
Sbjct: 327 EMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVY 386

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
            + G ++++  +F + P R+ V+W  +I G  Q G  ++AL LF  M    ++       
Sbjct: 387 AKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYS 446

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS---- 199
           S L ACA L AL+ G  ++S      +K D +    ++   A  G +D     F S    
Sbjct: 447 SALRACASLAALEPGLQIHSLT----VKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQD 502

Query: 200 YG-DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250
           +G +  +  YT  ++ L   GH  +A +L + +      P  + + A+L AC
Sbjct: 503 HGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIP---FQPSVMVWRALLGAC 551



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 112/245 (45%), Gaps = 9/245 (3%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K     DVFV N+L+  Y+ CGR+ ++  +F ES   + V+WN++I G+V+ G+  + 
Sbjct: 367 VIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKA 426

Query: 62  LKLFDKM----PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQN 117
           L+LF  M     Q  +V+++S L       +++   ++ +   K   +++V ++S  A  
Sbjct: 427 LRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKPDKLTFVGVLSACANA 486

Query: 118 GRPKEALALFREM-QSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI--QKKCIKLDS 174
           G   +  A F  M Q   +EP       ++    + G LD    +   I  Q   +   +
Sbjct: 487 GLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRA 546

Query: 175 ILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK 234
           +L A +I    + G I     +     DK      S ++  A    ++ +    +NMK K
Sbjct: 547 LLGACVIHNDIELGRISAQRVLEMEPQDKATHVLLSNMYATAKRWDNVASVR--KNMKRK 604

Query: 235 GISPD 239
           G+  +
Sbjct: 605 GVKKE 609



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 59/311 (18%), Positives = 119/311 (38%), Gaps = 42/311 (13%)

Query: 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ 195
           E NS    + L  C Q      G  ++  I K+   LD      L++MY K   +  A +
Sbjct: 35  EFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASK 94

Query: 196 VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVL-----SAC 250
           +F    +++  ++ + I G A +   +EA ELF  +  +G   +   +  +L     + C
Sbjct: 95  LFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVSTDC 154

Query: 251 SHLGWV----------EKGFYYFHSMFDVHGIKPELD---------------HYACMVDL 285
             LGW           E   +   ++ D + +   +D                +  MV  
Sbjct: 155 GELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTC 214

Query: 286 LGRAGLLEEAENFIASMPM---KPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD 342
                  +EA    + M M   KP+N  + ++  AC      ++G+ +    ++S    D
Sbjct: 215 FAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELD 274

Query: 343 GRY-ILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKT 401
               + L ++Y ++   ++A        +R  +  P   +I    ++  +   D+S E  
Sbjct: 275 LYVGVALLDLYTKSGDIDDA--------RRAFEEIPKKDVIPWSFMIARYAQSDQSKEAV 326

Query: 402 QEIYQFWEEIV 412
           +  +Q  + +V
Sbjct: 327 EMFFQMRQALV 337


>gi|108864632|gb|ABG22571.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  367 bits (943), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 199/517 (38%), Positives = 299/517 (57%), Gaps = 7/517 (1%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVC-----GRVRDARWVFDESDDLDVVSWNSMINGYVRN 55
           M+  ++   D FV +S+   ++       GR   A +V    +  DVV  +S+++ Y + 
Sbjct: 177 MLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVVK-SSLVDMYCKC 235

Query: 56  GEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFA 115
           G   +G K+FD M  +N V W +++ G    G  ++A ++F  MP R+L +W  LISG  
Sbjct: 236 GSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLV 295

Query: 116 QNGRPKEALALFREMQSLDLEPNSAILVSL-LSACAQLGALDYGNWVYSYIQKKCIKLDS 174
             G    A+ LF EM+   +  + A ++S+ +   A L A   G  ++    +     + 
Sbjct: 296 NTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLHGSTMRLGFLSNM 355

Query: 175 ILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK 234
           I+  ALIDMY+KC  I  A +VF     +DV ++T+ + G A +G + EA  L++ M   
Sbjct: 356 IVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLA 415

Query: 235 GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEE 294
           G  P+ ++++ ++ ACSH G V+KG   F SM + +GI P L HY C +DLL R+G L E
Sbjct: 416 GAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLE 475

Query: 295 AENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVE 354
           AE  + +MP +PD   WG LL AC  +++AEM  RI + L+E        YILLSN+Y  
Sbjct: 476 AEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLELRPKDSSTYILLSNVYAV 535

Query: 355 TLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKK 414
             K ++  +VRK M   +I++ PG S IE       F AG+   +  +EI  F EE+V +
Sbjct: 536 NGKWDSVAKVRKCMIGLEIRKEPGYSWIEAGREFRLFHAGEVPLDVREEIMVFLEEMVLE 595

Query: 415 IKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDC 474
           ++  GY  +T SVM D+EE EKE  +  HSE+LA+AFGLI + PGSVIR+VKN+R+C DC
Sbjct: 596 MRKRGYVPDTSSVMHDLEESEKEHHLFLHSERLAVAFGLIKSPPGSVIRVVKNLRVCVDC 655

Query: 475 HSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           H+ MKL+S++  RKI +RD   +HHFE G CSC E+W
Sbjct: 656 HTVMKLISEITHRKIVVRDSSRFHHFEGGKCSCSEFW 692



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 90/167 (53%), Gaps = 5/167 (2%)

Query: 89  VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD-LEPNSAILVSLLS 147
           + DA  +F++ P+R +  +  L++  + +  P+ AL + R M S D L P+  ++ S+ S
Sbjct: 136 LPDALHLFDETPRRDIYIYSSLLTAVSHSASPELALPILRCMLSADALHPDHFVISSVAS 195

Query: 148 ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSA 207
             A+L +   G  ++++        D ++ ++L+DMY KCGS D   +VF S   K+   
Sbjct: 196 VFARLRSRRLGRQLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVV 255

Query: 208 YTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
           +T+ + G A NG S EA +LF +M  + +     ++ A++S   + G
Sbjct: 256 WTALVSGYASNGRSEEALQLFRSMPGRNL----FAWTALISGLVNTG 298


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  367 bits (943), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 194/548 (35%), Positives = 311/548 (56%), Gaps = 39/548 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +K  + +D+FV  +L++ Y+  G + DA+ +F+E    D++ W+ MI  Y ++    E L
Sbjct: 264 LKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEAL 323

Query: 63  KLFDKMPQR----NDVSWNSILGG----------------LVRFG--------------- 87
            LF +M Q     N+ ++ S+L                  +++FG               
Sbjct: 324 DLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVY 383

Query: 88  ----SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
                ++++ ++F ++P R+ V+W  +I G+ Q G  + A+ LF  M   D++P      
Sbjct: 384 AKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYS 443

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           S+L A A L AL+ G  ++S   K     D+++  +LIDMYAKCG I+ A   F     +
Sbjct: 444 SVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKR 503

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           D  ++ + I G +M+G S+EA  LF+ M+     P+ ++++ VLSACS+ G + KG  +F
Sbjct: 504 DEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHF 563

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
            SM   + IKP ++HY CMV LLGR G  +EA   I  +  +P  ++W  LLGAC +H+ 
Sbjct: 564 ESMSKDYDIKPCIEHYTCMVWLLGRLGRFDEAMKLIGEIAYQPSVMVWRALLGACVIHKK 623

Query: 324 AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE 383
            ++G+     ++E + + D  ++LLSN+Y    + +N   VRK M+K+K+++ PG S +E
Sbjct: 624 VDLGRVCAQHVLEMEPHDDATHVLLSNMYATAGRWDNVAFVRKYMQKKKVRKEPGLSWVE 683

Query: 384 LDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYH 443
             GVVH F  GD SH   + I    E + KK ++ GY  +  +V+ D++++EKE  +  H
Sbjct: 684 NQGVVHYFSVGDTSHPDIKLICAMLEWLNKKTRDAGYVPDCNAVLLDVQDDEKERHLWVH 743

Query: 444 SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
           SE+LALA+GLI T     IRI+KN+RIC DCH+ MKL+SKV +R+I IRD   +HHF  G
Sbjct: 744 SERLALAYGLIRTPLSCSIRIIKNLRICIDCHTVMKLISKVVQREIVIRDINRFHHFRHG 803

Query: 504 SCSCLEYW 511
            CSC +YW
Sbjct: 804 VCSCGDYW 811



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 162/353 (45%), Gaps = 41/353 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K   + D+F +N L+ FY     ++DA  +FDE    + +S+ ++  GY R+ +  + 
Sbjct: 61  ILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSRDHQFHQA 120

Query: 62  L----KLFDKMPQRNDVSWNSILGGLVRF------------------------------- 86
           L    ++F +  + N   + ++L  LV                                 
Sbjct: 121 LHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVGTALIDA 180

Query: 87  ----GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
               G+VD A  VF+ +  + +VSW  +++ +A+N   +E+L LF +M+ +  +PN+  +
Sbjct: 181 YSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTI 240

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
              L +C  L A + G  V+    K C   D  +  AL+++YAK G I  A ++F     
Sbjct: 241 SGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPK 300

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
            D+  ++  I   A +  S EA +LF  M+   + P++ ++ +VL AC+    ++ G   
Sbjct: 301 TDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLG-KQ 359

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
            HS     G+   +     ++D+  + G +E +      +P + D V W T++
Sbjct: 360 IHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRND-VTWNTII 411



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 98/205 (47%), Gaps = 39/205 (19%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K     +VFV N+++  Y+ CG + ++  +F+E  D + V+WN++I GYV+ G+    
Sbjct: 364 VLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERA 423

Query: 62  LKLFDKM----PQRNDVSWNSIL----------GGL------------------------ 83
           + LF  M     Q  +V+++S+L           GL                        
Sbjct: 424 MNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDM 483

Query: 84  -VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G ++DA   F++M KR  VSW  +I G++ +G   EAL LF  MQ  D +PN    
Sbjct: 484 YAKCGRINDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTF 543

Query: 143 VSLLSACAQLGALDYGNWVYSYIQK 167
           V +LSAC+  G L  G   +  + K
Sbjct: 544 VGVLSACSNAGLLYKGQAHFESMSK 568



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 133/288 (46%), Gaps = 19/288 (6%)

Query: 40  LDVVSWNSMINGYVRNG-EILEGLKLFDKMPQRND----VSWNSILGGLVRFGSVDDACR 94
           LD  S+  M+   +RNG + + G  L   + +R       + N +L   V+  S+ DA +
Sbjct: 32  LDSHSYAHMLQQIIRNGADPIAGKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASK 91

Query: 95  VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA 154
           +F++MP+ + +S+V L  G++++ +  +AL     +     E N  +  +LL     +  
Sbjct: 92  LFDEMPQTNTISFVTLAQGYSRDHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDL 151

Query: 155 LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFG 214
                 +++ + K     D+ +  ALID Y+  G++D+A  VF     KD+ ++T  +  
Sbjct: 152 AHLCWTLHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVAC 211

Query: 215 LAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG--I 272
            A N    E+ +LF  M+  G  P++ +    L +C        G   F+    VHG  +
Sbjct: 212 YAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSC-------LGLEAFNVGKSVHGCAL 264

Query: 273 KPELDH----YACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLG 316
           K   DH       +++L  ++G + +A+     MP K D + W  ++ 
Sbjct: 265 KGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMP-KTDLIPWSLMIA 311



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 89/200 (44%), Gaps = 13/200 (6%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + +K  +  D  V NSLI  Y+ CGR+ DAR  FD+ +  D VSWN+MI GY  +G  +E
Sbjct: 464 LTIKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMICGYSMHGMSME 523

Query: 61  GLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMP-----KRSLVSWVVLI 111
            L LFD M       N +++  +L      G +      F  M      K  +  +  ++
Sbjct: 524 ALNLFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDYDIKPCIEHYTCMV 583

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK 171
               + GR  EA+ L  E+     +P+  +  +LL AC     +D G     ++ +    
Sbjct: 584 WLLGRLGRFDEAMKLIGEIA---YQPSVMVWRALLGACVIHKKVDLGRVCAQHVLEM-EP 639

Query: 172 LDSILCAALIDMYAKCGSID 191
            D      L +MYA  G  D
Sbjct: 640 HDDATHVLLSNMYATAGRWD 659


>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
           mitochondrial [Vitis vinifera]
 gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  367 bits (942), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 195/551 (35%), Positives = 315/551 (57%), Gaps = 40/551 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + +K     D +V  +L+  Y+  G + +A  VF+E    + V W  MI G++   E   
Sbjct: 138 LAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGHLNFSEEFG 197

Query: 61  GLKLFDKMP-----------------------------------QRNDVSWN-----SIL 80
             +LF +M                                    ++N +  N     S++
Sbjct: 198 VFELFSRMRRSGFELDPFVVEGLIQACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSLV 257

Query: 81  GGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
              ++ G +D A ++F ++  R +V W  +I+GFA+NGR  E++++FR+M +  + PNS 
Sbjct: 258 DMYMKCGFLDFALKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSV 317

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
              S++ AC+ LG+L  G  V+ Y+ +  ++LD     + IDMYAKCG I  A +VF   
Sbjct: 318 TFASIVLACSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQI 377

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
            +K+V ++++ I G  M+G   EA  LF  M+S    P+S+++++VLSACSH G +E+G+
Sbjct: 378 PEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRIEEGW 437

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
            +F SM   +GI P  +HYACMVDLLGRAG ++EA +FI +MP +P    WG LLGACR+
Sbjct: 438 SHFKSMSRDYGITPVEEHYACMVDLLGRAGKIDEALSFINNMPTEPGASAWGALLGACRI 497

Query: 321 HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS 380
           HR AE+ + +   L+  + +  G Y++LSNIY +    E  ++ R  M ++ I +  G +
Sbjct: 498 HRRAELAEEVAKKLLPLESDQSGVYVMLSNIYADVGMWEMVKKTRLKMCEKGIHKIVGFT 557

Query: 381 LIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVI 440
            IE++  ++ F + DR   K  +I   W  + ++++  GY  + R V+ D+++E K+ V+
Sbjct: 558 SIEIEEKLYLFSSEDRFAYKNTQIESLWNSLKERMRELGYVPDLRFVLHDVDDEVKQEVL 617

Query: 441 GYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF 500
             HSEKLA+ FGL+ +  G  IRI KN+R+C DCH+A K +S + +RKI +RD K +HH 
Sbjct: 618 CGHSEKLAIVFGLLNSGEGMPIRITKNMRVCGDCHTASKFISLITRRKIIMRDVKRFHHV 677

Query: 501 EDGSCSCLEYW 511
           +DG CSC +YW
Sbjct: 678 QDGVCSCGDYW 688



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 137/271 (50%), Gaps = 10/271 (3%)

Query: 58  ILEGLKLFDKMPQRNDVSWN-----SILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLIS 112
           + +G KLF  +  +  +  +     +++      GS+++A +VF ++P ++ V W V+I 
Sbjct: 128 LFQGAKLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIK 187

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSY-IQKKCIK 171
           G            LF  M+    E +  ++  L+ AC  + A   G   +   I+K  I 
Sbjct: 188 GHLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGKEGKTFHGLCIKKNFID 247

Query: 172 LDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM 231
            +  L  +L+DMY KCG +D A+++F     +DV  +++ I G A NG ++E+  +F  M
Sbjct: 248 SNFFLQTSLVDMYMKCGFLDFALKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQM 307

Query: 232 KSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGL 291
            +  ++P+S+++ +++ ACS LG +++G    H     +G++ ++ +Y   +D+  + G 
Sbjct: 308 LADSVTPNSVTFASIVLACSSLGSLKQG-RSVHGYMIRNGVELDVKNYTSFIDMYAKCGC 366

Query: 292 LEEAENFIASMPMKPDNVI-WGTLLGACRVH 321
           +  A      +P K  NV  W T++    +H
Sbjct: 367 IVTAYRVFCQIPEK--NVFSWSTMINGFGMH 395



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 114/265 (43%), Gaps = 12/265 (4%)

Query: 79  ILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPN 138
           I G  ++ GS+  A + FN +   +L SW  +++  ++N    + L LF+ M       +
Sbjct: 53  IFGAYIQLGSLHVASKAFNHITFENLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLVD 112

Query: 139 SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH 198
           S  LV  + AC  L         +S   K  ++ D  +  AL+++Y + GS++ A +VF 
Sbjct: 113 SFNLVFAVKACFGLSLFQGAKLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVF- 171

Query: 199 SYGDKDVSAYTSAIFGLAMNGH-----SIEAFELFENMKSKGISPDSISYIAVLSACSHL 253
               ++V    S I+G+ + GH         FELF  M+  G   D      ++ AC ++
Sbjct: 172 ----EEVPLKNSVIWGVMIKGHLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQACGNV 227

Query: 254 GWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGT 313
              ++G  +       + I         +VD+  + G L+ A      +  + D V+W  
Sbjct: 228 YAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGFLDFALKLFEEISYR-DVVVWSA 286

Query: 314 LL-GACRVHRNAEMGQRIGNMLIES 337
           ++ G  R  R  E       ML +S
Sbjct: 287 IIAGFARNGRALESISMFRQMLADS 311


>gi|242090555|ref|XP_002441110.1| hypothetical protein SORBIDRAFT_09g020580 [Sorghum bicolor]
 gi|241946395|gb|EES19540.1| hypothetical protein SORBIDRAFT_09g020580 [Sorghum bicolor]
          Length = 516

 Score =  367 bits (942), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 191/488 (39%), Positives = 288/488 (59%), Gaps = 2/488 (0%)

Query: 25  GRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLV 84
           GR   A +V       DVV  +S+I+ Y + G   +  K+FD +  +N V W +++ G  
Sbjct: 30  GRQLHAHFVASPYSADDVVK-SSLIDMYCKCGVPEDARKVFDSIGVKNGVVWTALVSGYA 88

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA-ILV 143
             G   +A  +F  MP+R L +W  LISGF + G    A+ LF EM+   +  + A +L 
Sbjct: 89  SNGCTGEAIDLFRSMPERGLFAWTALISGFVKAGNNTGAVGLFVEMRRDGVRIDDAFVLA 148

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           +++   A+L AL  G  ++ +          I+  AL+DMY+KC  I  A +VF     +
Sbjct: 149 TVVGGAAELAALVLGRQLHGFAITLGFLSSMIVGNALVDMYSKCSDIHSAREVFGGIIVR 208

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           DV ++T+ + G A +G   E   L++ M   G+ P+ ++++ ++ ACSH G V+KG   F
Sbjct: 209 DVVSWTTILVGEAQHGRVEEVLALYDRMLLAGMKPNEVTFVGLIYACSHAGLVQKGRQLF 268

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
            SM   +GIKP L HY C +DLL R+G L EAE  I +MP +PD   WG LL AC+ H +
Sbjct: 269 DSMKREYGIKPGLQHYTCYLDLLSRSGYLSEAEELITTMPYEPDEASWGALLSACKKHND 328

Query: 324 AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE 383
            +M  R+ + L+E        YILLSN+Y    K ++  +VRK M + +I++ PG S IE
Sbjct: 329 TQMCLRVADNLLELRPKDPSTYILLSNVYAVNCKWDSVAKVRKIMAEMEIRKEPGYSWIE 388

Query: 384 LDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYH 443
                  F AG+   +  +EI +F EE+V +++  GY  +T SVM D+EE EKE  +  H
Sbjct: 389 AGRESRMFHAGEVPLDIGEEITRFLEELVSEMRKRGYVPDTSSVMHDLEENEKEQHLFLH 448

Query: 444 SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
           SE+LA+AFG++ + PGSVIR+VKN+R+C DCH+ MK +S++ +RKI +RD   +HHFEDG
Sbjct: 449 SERLAVAFGILKSPPGSVIRVVKNLRVCGDCHTVMKFISEIAQRKIIVRDASRFHHFEDG 508

Query: 504 SCSCLEYW 511
           +CSC E+W
Sbjct: 509 NCSCSEFW 516


>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
           [Vitis vinifera]
 gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
          Length = 605

 Score =  367 bits (942), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 192/552 (34%), Positives = 314/552 (56%), Gaps = 42/552 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVC--GRVRDARWVFDESDDLDVVSWNSMINGYVRNGEIL 59
           ++K     D F  ++L+   ++   G +  A  +F + D+L    +N+M+ G+V++    
Sbjct: 54  ILKLGLFGDSFCASNLVATCALSDWGSMDYACSIFRQMDELGSFQFNTMMRGHVKDMNTE 113

Query: 60  EGLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDA----------------------- 92
           E L  + +M +R    ++ ++ ++L    R  +V++                        
Sbjct: 114 EALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVFVQNSLI 173

Query: 93  ------------CRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDL-EPNS 139
                       C VF QM +RS+ SW  LI+  A  G   + L L  +M +        
Sbjct: 174 SMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEE 233

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
           +ILVS+LSAC  LGALD G  V+ ++ +    L+ I+  +LI+MY KCGS+   M +F  
Sbjct: 234 SILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGSLYKGMCLFQK 293

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
              K+  +Y+  I GLAM+G+  E   +F  M  +G+ PD I Y+ VL+ACSH G V++G
Sbjct: 294 MAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEG 353

Query: 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACR 319
              F+ M   HGI+P + HY CMVDL+GRAG ++EA   I SMPM+P++V+W +LL A +
Sbjct: 354 LQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASK 413

Query: 320 VHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGC 379
           VH N + G+     L + D      Y++LSN+Y +  + E+  + R  M  + + + PG 
Sbjct: 414 VHNNLQAGEIAAKQLFKLDSQKASDYVVLSNMYAQAQRWEDVAKTRTNMFSKGLSQRPGF 473

Query: 380 SLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETV 439
           SL+E+   +H F++ D  H +++ +Y+   ++  ++K  GY+ +T  V+ D++EEEK+  
Sbjct: 474 SLVEVKRKMHRFVSQDAGHPQSESVYEMLYQMEWQLKFEGYSPDTTQVLCDVDEEEKKQR 533

Query: 440 IGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHH 499
           +  HS+KLA+A+ LI T  GS IRIV+N+R+C+DCH+  KL+S +F R+I++RDR  +HH
Sbjct: 534 LSGHSQKLAIAYALIHTSQGSPIRIVRNLRMCNDCHTYTKLISIIFDREITVRDRHRFHH 593

Query: 500 FEDGSCSCLEYW 511
           F+DG+CSC +YW
Sbjct: 594 FKDGACSCRDYW 605


>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
 gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  367 bits (942), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 171/436 (39%), Positives = 280/436 (64%), Gaps = 1/436 (0%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM-QSLDL 135
           NS++    + G ++ +C VF  M +R + SW  +I+  A  G   E L++F EM +    
Sbjct: 124 NSLINMYGKCGKIELSCSVFEHMDRRDVASWSAIIAAHASLGMWSECLSVFGEMSREGSC 183

Query: 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ 195
            P  +ILVS+LSAC  LGALD G   +  + +   +++ I+  +LIDMY KCG I+  + 
Sbjct: 184 RPEESILVSVLSACTHLGALDLGRCTHVTLLRNIREMNVIVQTSLIDMYVKCGCIEKGLS 243

Query: 196 VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGW 255
           +F     K+  +Y+  I GLAM+G  +EA ++F +M  +G+ PD + Y+ VLSAC+H G 
Sbjct: 244 LFQRMVKKNQLSYSVMITGLAMHGRGMEALQVFSDMLEEGLKPDDVVYLGVLSACNHAGL 303

Query: 256 VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
           V++G   F+ M   HGI+P + HY C+V L+GRAG+L +A   I SMP+KP+ V+W  LL
Sbjct: 304 VDEGLQCFNRMKLEHGIEPTIQHYGCIVHLMGRAGMLNKALEHIRSMPIKPNEVVWRGLL 363

Query: 316 GACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKR 375
            AC+ H N E+G+     L E + ++ G Y++LSN+Y    + E+  ++R  M ++   +
Sbjct: 364 SACKFHHNLEIGEIAAKSLGELNSSNPGDYVVLSNMYARAKRWEDVAKIRTEMARKGFTQ 423

Query: 376 APGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEE 435
            PG SL++++  +++F++ D SH + + +Y+   ++  ++K  GY+ +T  V+FD++EEE
Sbjct: 424 TPGFSLVQVERKIYKFVSQDMSHPQCKGMYEMIHQMEWQLKFEGYSPDTSQVLFDVDEEE 483

Query: 436 KETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRK 495
           K   +  HS+KLA+AF LI T  G+ IRI +N+R+C+DCH+  KL+S +++R+I++RDR 
Sbjct: 484 KRQRLKAHSQKLAMAFALIHTSQGAPIRIARNLRMCNDCHTYTKLISVIYQREITVRDRN 543

Query: 496 HYHHFEDGSCSCLEYW 511
            +HHF+DG+CSC +YW
Sbjct: 544 RFHHFKDGTCSCRDYW 559



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 124/276 (44%), Gaps = 44/276 (15%)

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
            L  +GS+D AC +F Q+ +     +  +I G+      + AL L+ EM    +E ++  
Sbjct: 28  ALSDWGSMDYACSIFRQIDQPGTFEFNTMIRGYVNVMNMENALFLYYEMLERGVESDNFT 87

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
             +L  ACA L +++ G  ++ YI K+ ++ D  +  +LI+MY KCG I+L+  VF    
Sbjct: 88  YPALFKACASLRSIEEGMQIHGYIFKRGLEGDLFVQNSLINMYGKCGKIELSCSVFEHMD 147

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG-ISPDSISYIAVLSACSHL------- 253
            +DV+++++ I   A  G   E   +F  M  +G   P+    ++VLSAC+HL       
Sbjct: 148 RRDVASWSAIIAAHASLGMWSECLSVFGEMSREGSCRPEESILVSVLSACTHLGALDLGR 207

Query: 254 ----------------------------GWVEKGFYYFHSMFDVHGIKPELDHYACMVDL 285
                                       G +EKG   F  M     +K     Y+ M+  
Sbjct: 208 CTHVTLLRNIREMNVIVQTSLIDMYVKCGCIEKGLSLFQRM-----VKKNQLSYSVMITG 262

Query: 286 LGRAGLLEEAENFIASM---PMKPDNVIWGTLLGAC 318
           L   G   EA    + M    +KPD+V++  +L AC
Sbjct: 263 LAMHGRGMEALQVFSDMLEEGLKPDDVVYLGVLSAC 298



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 73/345 (21%), Positives = 139/345 (40%), Gaps = 77/345 (22%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           + K     D+FV+NSLI  Y  CG++  +  VF+  D  DV SW+++I  +   G   E 
Sbjct: 111 IFKRGLEGDLFVQNSLINMYGKCGKIELSCSVFEHMDRRDVASWSAIIAAHASLGMWSEC 170

Query: 62  LKLFDKMPQR----------------------------------------NDVSWNSILG 81
           L +F +M +                                         N +   S++ 
Sbjct: 171 LSVFGEMSREGSCRPEESILVSVLSACTHLGALDLGRCTHVTLLRNIREMNVIVQTSLID 230

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
             V+ G ++    +F +M K++ +S+ V+I+G A +GR  EAL +F +M    L+P+  +
Sbjct: 231 MYVKCGCIEKGLSLFQRMVKKNQLSYSVMITGLAMHGRGMEALQVFSDMLEEGLKPDDVV 290

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQ-KKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
            + +LSAC   G +D G   ++ ++ +  I+        ++ +  + G ++ A+      
Sbjct: 291 YLGVLSACNHAGLVDEGLQCFNRMKLEHGIEPTIQHYGCIVHLMGRAGMLNKAL------ 344

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
                                       E+++S  I P+ + +  +LSAC     +E G 
Sbjct: 345 ----------------------------EHIRSMPIKPNEVVWRGLLSACKFHHNLEIGE 376

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMK 305
               S+ +++   P    Y  + ++  RA   E+       M  K
Sbjct: 377 IAAKSLGELNSSNP--GDYVVLSNMYARAKRWEDVAKIRTEMARK 419


>gi|413941558|gb|AFW74207.1| hypothetical protein ZEAMMB73_978994 [Zea mays]
          Length = 580

 Score =  367 bits (942), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 190/430 (44%), Positives = 284/430 (66%), Gaps = 8/430 (1%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           G +D A ++F+ +  +S+V+W  +ISG+ QNG    A+ ++REMQ     P+SA  V+ L
Sbjct: 154 GQLDVARKLFDAIRDKSVVAWNAMISGYEQNGLAGRAIEVYREMQMAGEAPDSATFVATL 213

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
           SACAQ GALD G  V   I  + ++++ +L AAL++MYA+CG ++ A + F+   +++V 
Sbjct: 214 SACAQAGALDLGRQVDKLIVSERMEMNVVLGAALVNMYARCGLVNKAREWFNMLQERNVV 273

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
            +TS I G  M+GH  EA +LF  M+ +G  P+ ++++AVLSAC+H G V +G   F SM
Sbjct: 274 TWTSMIAGYGMHGHGGEAVKLFNLMRQQGPPPNDVTFVAVLSACAHAGLVSEGRDAFASM 333

Query: 267 FDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA-SMPMKPDNVIWGTLLGACRVHRNAE 325
             V+G+ P ++HY  MVD+ GRAGLL++A  FI  S+P +P   +W  +LGAC++H++  
Sbjct: 334 KSVYGLVPRVEHYCSMVDMYGRAGLLDDAMRFIHDSIPGEPGPEVWTAMLGACKMHKDFN 393

Query: 326 MGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELD 385
           +G  +   LI  +       +LLSN+Y  + K  + E+VR TM KR++K+  G SLIE+ 
Sbjct: 394 LGVEVAERLIALEPESPSHRVLLSNLYALSGKMNHVEKVRDTMIKRRLKKPIGYSLIEIA 453

Query: 386 GVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSE 445
           GV H F  G++SH KT EIYQ+ E++++KI + GY  +T SV+ ++EEEE+E  + YH E
Sbjct: 454 GVAHLFRMGEKSHPKTSEIYQYLEKLIEKITDVGYVPKTDSVLHELEEEEREFALRYHGE 513

Query: 446 KLALAFGLI----CTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
           KLA+AFGL+    CT P   IRI+KN+RIC DCH A+K +S V  R+I +RD   +HHF+
Sbjct: 514 KLAVAFGLMMTSGCTTP---IRIIKNLRICEDCHLAIKYMSAVENREIIVRDMHRFHHFK 570

Query: 502 DGSCSCLEYW 511
            G CSC EYW
Sbjct: 571 AGKCSCQEYW 580



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 130/280 (46%), Gaps = 46/280 (16%)

Query: 12  FVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLF------ 65
           FV+ SL+  YS CG++  AR +FD   D  VV+WN+MI+GY +NG     ++++      
Sbjct: 141 FVQTSLVVLYSKCGQLDVARKLFDAIRDKSVVAWNAMISGYEQNGLAGRAIEVYREMQMA 200

Query: 66  ----------------------------DKMPQRNDVSWNSILGGLV-----RFGSVDDA 92
                                       DK+     +  N +LG  +     R G V+ A
Sbjct: 201 GEAPDSATFVATLSACAQAGALDLGRQVDKLIVSERMEMNVVLGAALVNMYARCGLVNKA 260

Query: 93  CRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQL 152
              FN + +R++V+W  +I+G+  +G   EA+ LF  M+     PN    V++LSACA  
Sbjct: 261 REWFNMLQERNVVTWTSMIAGYGMHGHGGEAVKLFNLMRQQGPPPNDVTFVAVLSACAHA 320

Query: 153 GALDYGNWVYSYIQKKCIKLDSI--LCAALIDMYAKCGSIDLAMQVFHSY--GDKDVSAY 208
           G +  G   ++ ++     +  +   C +++DMY + G +D AM+  H    G+     +
Sbjct: 321 GLVSEGRDAFASMKSVYGLVPRVEHYC-SMVDMYGRAGLLDDAMRFIHDSIPGEPGPEVW 379

Query: 209 TSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248
           T+ +    M+       E+ E + +  + P+S S+  +LS
Sbjct: 380 TAMLGACKMHKDFNLGVEVAERLIA--LEPESPSHRVLLS 417



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 116/225 (51%), Gaps = 2/225 (0%)

Query: 110 LISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC 169
           L    A+ G P  ALA +R + +  L  +S    S+  ACA L A+  G  ++++     
Sbjct: 76  LTRATARRGLPAAALAFYRCLLAAALPFSSFAFTSVAKACADLSAIRAGMGIHAHAVLLG 135

Query: 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFE 229
           +  +  +  +L+ +Y+KCG +D+A ++F +  DK V A+ + I G   NG +  A E++ 
Sbjct: 136 LGSNRFVQTSLVVLYSKCGQLDVARKLFDAIRDKSVVAWNAMISGYEQNGLAGRAIEVYR 195

Query: 230 NMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRA 289
            M+  G +PDS +++A LSAC+  G ++ G      +     ++  +   A +V++  R 
Sbjct: 196 EMQMAGEAPDSATFVATLSACAQAGALDLG-RQVDKLIVSERMEMNVVLGAALVNMYARC 254

Query: 290 GLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNML 334
           GL+ +A  +  +M  + + V W +++    +H +     ++ N++
Sbjct: 255 GLVNKAREWF-NMLQERNVVTWTSMIAGYGMHGHGGEAVKLFNLM 298



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 11/158 (6%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++V      +V +  +L+  Y+ CG V  AR  F+   + +VV+W SMI GY  +G   E
Sbjct: 231 LIVSERMEMNVVLGAALVNMYARCGLVNKAREWFNMLQERNVVTWTSMIAGYGMHGHGGE 290

Query: 61  GLKLFDKM----PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPK-RSLVSWV----VLI 111
            +KLF+ M    P  NDV++ ++L      G V +    F  M     LV  V     ++
Sbjct: 291 AVKLFNLMRQQGPPPNDVTFVAVLSACAHAGLVSEGRDAFASMKSVYGLVPRVEHYCSMV 350

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
             + + G   +A+    +  S+  EP   +  ++L AC
Sbjct: 351 DMYGRAGLLDDAMRFIHD--SIPGEPGPEVWTAMLGAC 386


>gi|297743264|emb|CBI36131.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  367 bits (942), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 182/427 (42%), Positives = 274/427 (64%), Gaps = 4/427 (0%)

Query: 88  SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLS 147
           S+  A  +F+++PK ++  W VLI G+A NG  + A+ L+ +M    L P++     +L 
Sbjct: 125 SLSSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLK 184

Query: 148 ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD--- 204
           ACA L A+++G  ++ ++ +   + D  + AALIDMYAKCG +  A +VF     +D   
Sbjct: 185 ACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVL 244

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           V ++ + I G AM+GH+ EA +LFE M ++   PD I+++ VLSACSH G +E+G+ +F 
Sbjct: 245 VVSWNAMITGYAMHGHATEALDLFEEM-NRVAKPDHITFVGVLSACSHGGLLEEGWMFFE 303

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
           +M   + I P + HY CMVDLLG +G L+EA N I  M + PD+ +WG LL +C++H N 
Sbjct: 304 TMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANV 363

Query: 325 EMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIEL 384
           E+G+     LIE + +  G Y++LSNIY +  K E   ++RK M  R++K++  CS IE+
Sbjct: 364 ELGEIALERLIELEPDDAGNYVILSNIYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEV 423

Query: 385 DGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHS 444
              VH FL+GD SH  + EIY   E +   +K  GY+  T SV  D+E++EK  ++  HS
Sbjct: 424 KNKVHAFLSGDTSHPLSDEIYSELERVGGLMKEAGYSPSTGSVFHDVEDDEKANMVCSHS 483

Query: 445 EKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGS 504
           E+LA+AFGLI T PG+ + I KN+RIC DCH A+K +SK+ +R+I++RD   YHHF+DG 
Sbjct: 484 ERLAIAFGLISTPPGTRLLITKNLRICEDCHVAIKFISKITEREITVRDVNRYHHFKDGV 543

Query: 505 CSCLEYW 511
           CSC +YW
Sbjct: 544 CSCGDYW 550



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 114/295 (38%), Gaps = 76/295 (25%)

Query: 7   FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFD 66
           F +D  +   L+  Y VC  +  AR +FD     ++  WN +I GY  NG     ++L+ 
Sbjct: 106 FGFDTVIATKLVNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYY 165

Query: 67  KMPQRNDVSWN---------------------------------------SILGGLVRFG 87
           +M     V  N                                       +++    + G
Sbjct: 166 QMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCG 225

Query: 88  SVDDACRVFNQMPKRS---LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
            V  A  VF+++  R    +VSW  +I+G+A +G   EAL LF EM  +  +P+    V 
Sbjct: 226 CVGSAREVFDKILVRDAVLVVSWNAMITGYAMHGHATEALDLFEEMNRV-AKPDHITFVG 284

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           +LSAC+  G L+ G W++     +  K+D                               
Sbjct: 285 VLSACSHGGLLEEG-WMFFETMIRDYKIDPT----------------------------- 314

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
           V  YT  +  L  +G   EA+ L   MK   + PDS  + A+L++C     VE G
Sbjct: 315 VQHYTCMVDLLGHSGRLDEAYNLIMQMK---VLPDSGVWGALLNSCKIHANVELG 366



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 82/159 (51%), Gaps = 14/159 (8%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDE---SDDLDVVSWNSMINGYVRNGEI 58
           VV+  +  DVFV  +LI  Y+ CG V  AR VFD+    D + VVSWN+MI GY  +G  
Sbjct: 202 VVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLVVSWNAMITGYAMHGHA 261

Query: 59  LEGLKLFDKM---PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPK-----RSLVSWVVL 110
            E L LF++M    + + +++  +L      G +++    F  M +      ++  +  +
Sbjct: 262 TEALDLFEEMNRVAKPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCM 321

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
           +     +GR  EA  L  +M+ L   P+S +  +LL++C
Sbjct: 322 VDLLGHSGRLDEAYNLIMQMKVL---PDSGVWGALLNSC 357



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 88/197 (44%), Gaps = 5/197 (2%)

Query: 131 QSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSI 190
           +S  L P  +   SLL +C    A+  G  +++ +       D+++   L+++Y  C S+
Sbjct: 67  ESTCLTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSL 126

Query: 191 DLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250
             A  +F      ++  +   I G A NG    A +L+  M   G+ PD+ ++  VL AC
Sbjct: 127 SSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKAC 186

Query: 251 SHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVI 310
           + L  +E G    H      G + ++   A ++D+  + G +  A      + ++ D V+
Sbjct: 187 AALSAIEHG-REIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVR-DAVL 244

Query: 311 ---WGTLLGACRVHRNA 324
              W  ++    +H +A
Sbjct: 245 VVSWNAMITGYAMHGHA 261


>gi|115487662|ref|NP_001066318.1| Os12g0181900 [Oryza sativa Japonica Group]
 gi|77553160|gb|ABA95956.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113648825|dbj|BAF29337.1| Os12g0181900 [Oryza sativa Japonica Group]
 gi|125578708|gb|EAZ19854.1| hypothetical protein OsJ_35439 [Oryza sativa Japonica Group]
          Length = 584

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 186/427 (43%), Positives = 281/427 (65%), Gaps = 2/427 (0%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           G +  A ++F+ +  RS+V+W  +ISG+ QNG  + A+ ++REMQ   + P+SA  V+ L
Sbjct: 158 GQLPVARKLFDAIRDRSVVAWNAMISGYEQNGLAERAIEVYREMQVAQVVPDSATFVATL 217

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
           SACAQ GALD G  V   I    + +   L +AL++MYA+CG +  A   F    +++V 
Sbjct: 218 SACAQAGALDLGREVERRIVSDQMDVSVFLGSALVNMYARCGLVSKARDWFDRLQERNVV 277

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
            +TS I G  M+GH  EA +LF  M+ +G +P+ ++++AVL+AC+H G V +G   F SM
Sbjct: 278 TWTSMIAGYGMHGHGREAIKLFHLMRREGPTPNDVTFVAVLAACAHAGLVNEGRNAFDSM 337

Query: 267 FDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA-SMPMKPDNVIWGTLLGACRVHRNAE 325
             V+G+ P  +HY  MVD+ GRAGLL++A  FI  S+P +P   +W  +LGAC++H+N  
Sbjct: 338 KRVYGLVPRAEHYCSMVDMYGRAGLLDDAMQFICDSIPEEPGPEVWTAMLGACKMHKNFN 397

Query: 326 MGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELD 385
           +G  +   LI  +  +    +LLSNIY  + K  + E+VR  M KR++K+  G SLIEL 
Sbjct: 398 LGVEVAERLIALEPENPSHRVLLSNIYALSGKMNHVEKVRNVMIKRRLKKQIGYSLIELG 457

Query: 386 GVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSE 445
           G  H F  G++SH++T+EIY++ EE++ +I + GY  ET SV+ ++EEEE+E  + YHSE
Sbjct: 458 GTSHLFRMGEKSHQQTREIYRYLEELIHRISDAGYVPETDSVLHELEEEEREVALRYHSE 517

Query: 446 KLALAFGLICTKPGSV-IRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGS 504
           KLA+A+GL+ +   +  IR++KN+RIC DCH A+K +S V  R+I +RD+  +HHF+DG 
Sbjct: 518 KLAVAYGLMMSSGSTAPIRVIKNLRICGDCHLAIKFMSSVESREIIVRDKHRFHHFKDGK 577

Query: 505 CSCLEYW 511
           CSCLEYW
Sbjct: 578 CSCLEYW 584



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 111/230 (48%), Gaps = 42/230 (18%)

Query: 7   FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFD 66
           F  D FV+ +L+  YS CG++  AR +FD   D  VV+WN+MI+GY +NG     ++++ 
Sbjct: 140 FGSDRFVQTALVVLYSKCGQLPVARKLFDAIRDRSVVAWNAMISGYEQNGLAERAIEVYR 199

Query: 67  KM------------------------------------PQRNDVS---WNSILGGLVRFG 87
           +M                                      + DVS    ++++    R G
Sbjct: 200 EMQVAQVVPDSATFVATLSACAQAGALDLGREVERRIVSDQMDVSVFLGSALVNMYARCG 259

Query: 88  SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLS 147
            V  A   F+++ +R++V+W  +I+G+  +G  +EA+ LF  M+     PN    V++L+
Sbjct: 260 LVSKARDWFDRLQERNVVTWTSMIAGYGMHGHGREAIKLFHLMRREGPTPNDVTFVAVLA 319

Query: 148 ACAQLGALDYGNWVYSYIQK--KCIKLDSILCAALIDMYAKCGSIDLAMQ 195
           ACA  G ++ G   +  +++    +      C +++DMY + G +D AMQ
Sbjct: 320 ACAHAGLVNEGRNAFDSMKRVYGLVPRAEHYC-SMVDMYGRAGLLDDAMQ 368



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 153/339 (45%), Gaps = 20/339 (5%)

Query: 110 LISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC 169
           L    A  G P EA+A +  + +  L  +S    +   ACA L AL  G  V+++     
Sbjct: 80  LARAAAHRGLPGEAIAFYGRLLAAALPFSSFAFTAAAKACADLSALRTGMAVHAHSVLLG 139

Query: 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFE 229
              D  +  AL+ +Y+KCG + +A ++F +  D+ V A+ + I G   NG +  A E++ 
Sbjct: 140 FGSDRFVQTALVVLYSKCGQLPVARKLFDAIRDRSVVAWNAMISGYEQNGLAERAIEVYR 199

Query: 230 NMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHY----ACMVDL 285
            M+   + PDS +++A LSAC+  G ++ G        +   +  ++D      + +V++
Sbjct: 200 EMQVAQVVPDSATFVATLSACAQAGALDLG-----REVERRIVSDQMDVSVFLGSALVNM 254

Query: 286 LGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNML-IESDQNHDGR 344
             R GL+ +A ++   +  + + V W +++    +H +     ++ +++  E    +D  
Sbjct: 255 YARCGLVSKARDWFDRLQER-NVVTWTSMIAGYGMHGHGREAIKLFHLMRREGPTPNDVT 313

Query: 345 YI-LLSNIYVETL--KGENAEEVRKTMRKRKIKRAPGCSLIELDGV------VHEFLAGD 395
           ++ +L+      L  +G NA +  K +     +    CS++++ G         +F+   
Sbjct: 314 FVAVLAACAHAGLVNEGRNAFDSMKRVYGLVPRAEHYCSMVDMYGRAGLLDDAMQFICDS 373

Query: 396 RSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEE 434
              E   E++       K  KN+   VE    +  +E E
Sbjct: 374 IPEEPGPEVWTAMLGACKMHKNFNLGVEVAERLIALEPE 412



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 11/157 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +V +     VF+ ++L+  Y+ CG V  AR  FD   + +VV+W SMI GY  +G   E 
Sbjct: 236 IVSDQMDVSVFLGSALVNMYARCGLVSKARDWFDRLQERNVVTWTSMIAGYGMHGHGREA 295

Query: 62  LKLFDKM----PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPK-RSLVS----WVVLIS 112
           +KLF  M    P  NDV++ ++L      G V++    F+ M +   LV     +  ++ 
Sbjct: 296 IKLFHLMRREGPTPNDVTFVAVLAACAHAGLVNEGRNAFDSMKRVYGLVPRAEHYCSMVD 355

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
            + + G   +A+       S+  EP   +  ++L AC
Sbjct: 356 MYGRAGLLDDAMQFI--CDSIPEEPGPEVWTAMLGAC 390


>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 840

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 201/572 (35%), Positives = 317/572 (55%), Gaps = 62/572 (10%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEI--- 58
           ++K  +   VF++  LI  Y+ C  + DA  VFDE  + +VVSW +MI+ Y + G     
Sbjct: 269 MIKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFDEMPERNVVSWTAMISAYSQRGYASQA 328

Query: 59  -----------LEGLKLFDKM----PQR-------NDVSW-------------------- 76
                      L G+   DK+    P R       N+ ++                    
Sbjct: 329 LNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPNEFTFATVLTSCTSSLGFILGRQIH 388

Query: 77  ---------------NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
                          +S+L    + G + +A  VF  +P+R +VS   +ISG+AQ G  +
Sbjct: 389 SLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFECLPERDVVSCTAIISGYAQLGLDE 448

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
           EAL LFR +Q   ++ N      +L+A + L ALD G  V++++ +  I    +L  +LI
Sbjct: 449 EALELFRRLQGEGMKSNYVTYTGVLTALSGLAALDLGKQVHNHVLRSEIPSFVVLQNSLI 508

Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG-ISPDS 240
           DMY+KCG++  + ++F +  ++ V ++ + + G + +G   E  +LF  M+ +  + PDS
Sbjct: 509 DMYSKCGNLTYSRRIFDTMYERTVISWNAMLVGYSKHGEGREVLKLFTLMREETKVKPDS 568

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVH-GIKPELDHYACMVDLLGRAGLLEEAENFI 299
           ++ +AVLS CSH G  +KG   F+ M      ++P+++HY C+VDLLGR+G +EEA  FI
Sbjct: 569 VTILAVLSGCSHGGLEDKGLNIFNDMSSGKIEVEPKMEHYGCVVDLLGRSGRVEEAFEFI 628

Query: 300 ASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGE 359
             MP +P   IWG+LLGACRVH N ++G+  G  L+E +  + G Y++LSN+Y    + E
Sbjct: 629 KKMPFEPTAAIWGSLLGACRVHSNVDIGEFAGQQLLEIEPGNAGNYVILSNLYASAGRWE 688

Query: 360 NAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYG 419
           +   +R  M K+ + + PG S IELD V+H F A DRSH + +EI    +E+    K  G
Sbjct: 689 DVSSLRDLMLKKTVTKEPGRSSIELDQVLHTFHASDRSHPRREEICMKVKELSTSFKEVG 748

Query: 420 YNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMK 479
           Y  +   V+ D++EE+KE ++  HSEKLAL+FGLI +     IR++KN+RIC DCH+  K
Sbjct: 749 YVPDLSCVLHDVDEEQKEKILLGHSEKLALSFGLIASPASVPIRVIKNLRICVDCHNFAK 808

Query: 480 LVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            +SKV+ R++S+RD+  +H    G CSC +YW
Sbjct: 809 YISKVYGREVSLRDKNRFHRIVGGKCSCEDYW 840



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/290 (22%), Positives = 135/290 (46%), Gaps = 43/290 (14%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +++K ++   VFV +SL+  Y+  G++ +AR VF+   + DVVS  ++I+GY + G   E
Sbjct: 390 LIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFECLPERDVVSCTAIISGYAQLGLDEE 449

Query: 61  GLKLFDKMP----QRNDVSWNSILGGLVRFGSVD-------------------------- 90
            L+LF ++     + N V++  +L  L    ++D                          
Sbjct: 450 ALELFRRLQGEGMKSNYVTYTGVLTALSGLAALDLGKQVHNHVLRSEIPSFVVLQNSLID 509

Query: 91  --DAC-------RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM-QSLDLEPNSA 140
               C       R+F+ M +R+++SW  ++ G++++G  +E L LF  M +   ++P+S 
Sbjct: 510 MYSKCGNLTYSRRIFDTMYERTVISWNAMLVGYSKHGEGREVLKLFTLMREETKVKPDSV 569

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSIL--CAALIDMYAKCGSIDLAMQVFH 198
            ++++LS C+  G  D G  +++ +    I+++  +     ++D+  + G ++ A +   
Sbjct: 570 TILAVLSGCSHGGLEDKGLNIFNDMSSGKIEVEPKMEHYGCVVDLLGRSGRVEEAFEFIK 629

Query: 199 SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248
               +  +A   ++ G A   HS      F   +   I P +     +LS
Sbjct: 630 KMPFEPTAAIWGSLLG-ACRVHSNVDIGEFAGQQLLEIEPGNAGNYVILS 678



 Score = 43.9 bits (102), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 53/249 (21%), Positives = 97/249 (38%), Gaps = 54/249 (21%)

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           ++L+ C    A   G  V++++ K        L   LI +Y KC S+  A  VF    ++
Sbjct: 248 AILNECVNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFDEMPER 307

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELF---------------------ENMKSKGISPDSIS 242
           +V ++T+ I   +  G++ +A  LF                      N       P+  +
Sbjct: 308 NVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPNEFT 367

Query: 243 YIAVLSAC-SHLGWV--------------EKGFYYFHSMFDVHGIK-------------P 274
           +  VL++C S LG++              E   +   S+ D++                P
Sbjct: 368 FATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFECLP 427

Query: 275 ELDHYACMVDLLGRA--GLLEEAENFIASMP---MKPDNVIWGTLLGACRVHRNAEMGQR 329
           E D  +C   + G A  GL EEA      +    MK + V +  +L A       ++G++
Sbjct: 428 ERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALSGLAALDLGKQ 487

Query: 330 IGNMLIESD 338
           + N ++ S+
Sbjct: 488 VHNHVLRSE 496


>gi|356519586|ref|XP_003528453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 179/423 (42%), Positives = 282/423 (66%), Gaps = 5/423 (1%)

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           A +VF++MP+RS+++W  +ISG+ QNG   EA+ +F +M+    EP+SA  VS+LSAC+Q
Sbjct: 162 ARKVFDEMPQRSIIAWNSMISGYEQNGLASEAVEVFNKMRESGGEPDSATFVSVLSACSQ 221

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSA 211
           LG+LD G W++  I    I+++ +L  +L++M+++CG +  A  VF S  + +V ++T+ 
Sbjct: 222 LGSLDLGCWLHECIVGTGIRMNVVLATSLVNMFSRCGDVGRARAVFDSMNEGNVVSWTAM 281

Query: 212 IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG 271
           I G  M+G+ +EA E+F  MK+ G+ P+ ++Y+AVLSAC+H G + +G   F SM   +G
Sbjct: 282 ISGYGMHGYGVEAMEVFHRMKACGVVPNRVTYVAVLSACAHAGLINEGRLVFASMKQEYG 341

Query: 272 IKPELDHYACMVDLLGRAGLLEEAENFI---ASMPMKPDNVIWGTLLGACRVHRNAEMGQ 328
           + P ++H+ CMVD+ GR GLL EA  F+   +S  + P   +W  +LGAC++H+N ++G 
Sbjct: 342 VVPGVEHHVCMVDMFGRGGLLNEAYQFVRGLSSEELVP--AVWTAMLGACKMHKNFDLGV 399

Query: 329 RIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVV 388
            +   LI ++  + G Y+LLSN+Y    + +  E VR  M +R +K+  G S I+++   
Sbjct: 400 EVAENLISAEPENPGHYVLLSNMYALAGRMDRVESVRNVMIQRGLKKQVGYSTIDVENRS 459

Query: 389 HEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLA 448
           + F  GD+SH +T EIY + +E++ + K+ GY     S M ++EEEE+E  + YHSEKLA
Sbjct: 460 YLFSMGDKSHPETNEIYCYLDELMWRCKDAGYAPAPESAMHELEEEEREYALRYHSEKLA 519

Query: 449 LAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCL 508
           +AFGL+ T  G  +RIVKN+RIC DCHSA+K +S V  R+I +RD+  +HHF +GSCSC 
Sbjct: 520 VAFGLMKTCHGVTLRIVKNLRICEDCHSAIKFISVVMNREIIVRDKLRFHHFREGSCSCS 579

Query: 509 EYW 511
           +YW
Sbjct: 580 DYW 582



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 142/291 (48%), Gaps = 48/291 (16%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V  + +A + FV+ +L+ FY+     R AR VFDE     +++WNSMI+GY +NG   E 
Sbjct: 134 VFVSGYASNSFVQAALVTFYAKSCTPRVARKVFDEMPQRSIIAWNSMISGYEQNGLASEA 193

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDAC------------------------ 93
           +++F+KM +     +  ++ S+L    + GS+D  C                        
Sbjct: 194 VEVFNKMRESGGEPDSATFVSVLSACSQLGSLDLGCWLHECIVGTGIRMNVVLATSLVNM 253

Query: 94  -----------RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
                       VF+ M + ++VSW  +ISG+  +G   EA+ +F  M++  + PN    
Sbjct: 254 FSRCGDVGRARAVFDSMNEGNVVSWTAMISGYGMHGYGVEAMEVFHRMKACGVVPNRVTY 313

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI---LCAALIDMYAKCGSIDLAMQVFHS 199
           V++LSACA  G ++ G  V++ ++++   +  +   +C  ++DM+ + G ++ A Q    
Sbjct: 314 VAVLSACAHAGLINEGRLVFASMKQEYGVVPGVEHHVC--MVDMFGRGGLLNEAYQFVRG 371

Query: 200 YGDKDV--SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248
              +++  + +T+ +    M+ +     E+ EN+ S    P++  +  +LS
Sbjct: 372 LSSEELVPAVWTAMLGACKMHKNFDLGVEVAENLISA--EPENPGHYVLLS 420



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 112/236 (47%), Gaps = 4/236 (1%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           GS+    R+F  +       +  LI   +  G   +A+  +R M    + P++    S++
Sbjct: 56  GSIAYTRRLFRSVSDPDSFLFNSLIKASSNFGFSLDAVFFYRRMLHSRIVPSTYTFTSVI 115

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
            ACA L  L  G  V+S++       +S + AAL+  YAK  +  +A +VF     + + 
Sbjct: 116 KACADLSLLRLGTIVHSHVFVSGYASNSFVQAALVTFYAKSCTPRVARKVFDEMPQRSII 175

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
           A+ S I G   NG + EA E+F  M+  G  PDS ++++VLSACS LG ++ G  + H  
Sbjct: 176 AWNSMISGYEQNGLASEAVEVFNKMRESGGEPDSATFVSVLSACSQLGSLDLGC-WLHEC 234

Query: 267 FDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVI-WGTLLGACRVH 321
               GI+  +     +V++  R G +  A     S  M   NV+ W  ++    +H
Sbjct: 235 IVGTGIRMNVVLATSLVNMFSRCGDVGRARAVFDS--MNEGNVVSWTAMISGYGMH 288



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 2/167 (1%)

Query: 176 LCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG 235
           L   L+ +    GSI    ++F S  D D   + S I   +  G S++A   +  M    
Sbjct: 44  LLTKLLTLSCAAGSIAYTRRLFRSVSDPDSFLFNSLIKASSNFGFSLDAVFFYRRMLHSR 103

Query: 236 ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA 295
           I P + ++ +V+ AC+ L  +  G    HS   V G        A +V    ++     A
Sbjct: 104 IVPSTYTFTSVIKACADLSLLRLG-TIVHSHVFVSGYASNSFVQAALVTFYAKSCTPRVA 162

Query: 296 ENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD 342
                 MP +   + W +++     +  A     + N + ES    D
Sbjct: 163 RKVFDEMPQR-SIIAWNSMISGYEQNGLASEAVEVFNKMRESGGEPD 208


>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
 gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
          Length = 611

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 202/547 (36%), Positives = 317/547 (57%), Gaps = 45/547 (8%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           +V V  ++I  Y  CGR+ DAR  F+E    + V+WN+M+  Y  +G   E L+LF +M 
Sbjct: 65  NVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFREMC 124

Query: 70  QRND-------------------------------------------VSWNSILGGLVRF 86
           +R+                                            V   ++L    + 
Sbjct: 125 ERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNMYSKC 184

Query: 87  GSVDDACRVFNQMPKRS-LVSWVVLISGFAQNGRPKEALALFREMQ-SLDLEPNSAILVS 144
           G +++A +VF+ +   +  V W  +I+ +AQ+GR K+AL L+R M  + DL P     V+
Sbjct: 185 GDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVT 244

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           ++  CA+L AL  G  +++ ++      + ++  AL+ MY KCG +D A+ VFHS   KD
Sbjct: 245 VIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKD 304

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
             ++ + I   A +GHS +A  L++ M  +G+ P  ++++ +LSACSH G V  G  YF+
Sbjct: 305 EISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLDYFY 364

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
            M D H IKP + H+ C++DLLGR G L EAE  + SMP++ + V W +LLGAC+ H + 
Sbjct: 365 RMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKTHGDL 424

Query: 325 EMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIEL 384
           + G R  + +++      G Y+LLSNIY    + ++ E++RK M  R +K++PG S IE+
Sbjct: 425 KRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSPGKSWIEI 484

Query: 385 DGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHS 444
             VVHEF++GDRSH + +EIY    ++V+++K  GY  +T SV  D+EEEEKE ++  HS
Sbjct: 485 GDVVHEFVSGDRSHPQGEEIYVELGKMVEEMKGLGYVPDTSSVFHDLEEEEKEDLLVCHS 544

Query: 445 EKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGS 504
           EKLA+ +G +     S++RIVKN+R+C DCH+A K +S++  RKI +RD   +H FE+GS
Sbjct: 545 EKLAIVYGNMVVPGKSMLRIVKNLRVCLDCHTATKFMSRITGRKIVVRDAARFHLFENGS 604

Query: 505 CSCLEYW 511
           CSC +YW
Sbjct: 605 CSCRDYW 611



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 102/217 (47%), Gaps = 7/217 (3%)

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA--LDYGNWVYSYIQKK 168
           ++ F+ NG   EAL  FR M      P+      +L+A AQ+GA  +D G  ++ Y +  
Sbjct: 1   MAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARIS 60

Query: 169 CIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELF 228
            +  + ++  A+I MY KCG +D A   F     K+   + + +    ++G   EA ELF
Sbjct: 61  GLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELF 120

Query: 229 ENM--KSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHY--ACMVD 284
             M  +S+   PD  S+   + ACS+L  +E+G    H M    G +   D      +++
Sbjct: 121 REMCERSRSARPDKFSFSIAIEACSNLEDLEQG-REIHEMLRREGKELHKDVVVGTALLN 179

Query: 285 LLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           +  + G LEEA     S+    D+V W  ++ A   H
Sbjct: 180 MYSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQH 216


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 192/530 (36%), Positives = 309/530 (58%), Gaps = 19/530 (3%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + +K+SF   +   N+L+  YS CG +  A  VF++  + +VVSW SMI GY R+G    
Sbjct: 276 LAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDG 335

Query: 61  GLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWV----VLIS 112
            +KL  +M +     + V+  SIL    R GS+D+   V + +   ++ S +     L+ 
Sbjct: 336 AIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMD 395

Query: 113 GFAQNGRPKEALALFREMQSLD----------LEPNSAILVSLLSACAQLGALDYGNWVY 162
            +A+ G  + A ++F  M   D          L+P+S  +  +L ACA L AL+ G  ++
Sbjct: 396 MYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPACASLSALERGKEIH 455

Query: 163 SYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSI 222
            YI +     D  +  AL+D+Y KCG + LA  +F     KD+ ++T  I G  M+G+  
Sbjct: 456 GYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGN 515

Query: 223 EAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACM 282
           EA   F  M+  GI PD +S+I++L ACSH G +E+G+ +F+ M +   I+P+L+HYACM
Sbjct: 516 EAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACM 575

Query: 283 VDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD 342
           VDLL R G L +A  FI ++P+ PD  IWG LL  CR + + E+ +++   + E +  + 
Sbjct: 576 VDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPENS 635

Query: 343 GRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDR-SHEKT 401
           G Y+LL+NIY E  K E  + +R+ + K+ +++ PGCS IE+ G V+ F++G+  SH  +
Sbjct: 636 GYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHS 695

Query: 402 QEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSV 461
           + I    +++ +K+K  G+  +T+  + + +E +KE  +  HSEKLA+AFGL+   P   
Sbjct: 696 KNIESLLKKMRRKMKEEGHFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKT 755

Query: 462 IRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           IR+ KN+R+C DCH   K +SK  +R+I +RD   +HHF+DG CSC  +W
Sbjct: 756 IRVTKNLRVCGDCHEMAKFMSKETRREIVLRDPNRFHHFKDGYCSCRGFW 805



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 165/316 (52%), Gaps = 13/316 (4%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++  NS   D  +   L+ FY+ CG +++ R VFD  +  +V  WN M++ Y + G+  E
Sbjct: 124 IIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKE 183

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
            + LF  M ++            +     + A  +F+++  R ++SW  +ISG+  NG  
Sbjct: 184 SICLFKIMVEKG-----------IEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLT 232

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
           +  L ++++M  L ++ + A ++S+L  CA  G L  G  V+S   K   +        L
Sbjct: 233 ERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTL 292

Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           +DMY+KCG +D A++VF   G+++V ++TS I G   +G S  A +L + M+ +G+  D 
Sbjct: 293 LDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDV 352

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
           ++  ++L AC+  G ++ G    H     + ++  L     ++D+  + G +E A +  +
Sbjct: 353 VAITSILHACARSGSLDNG-KDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFS 411

Query: 301 SMPMKPDNVIWGTLLG 316
           +M +K D + W T++G
Sbjct: 412 TMVVK-DIISWNTMIG 426



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 72/170 (42%), Gaps = 18/170 (10%)

Query: 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD 173
           F Q G  + A+ L    +  +LE  +    S+L  CA L +   G  V+S I+   + +D
Sbjct: 76  FCQLGDLENAMELICMCKKSELETKT--YSSVLQLCAGLKSFTDGKKVHSIIKSNSVGVD 133

Query: 174 SILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKS 233
             L   L+  YA CG +    +VF +   K+V  +   +   A  G   E+  LF+ M  
Sbjct: 134 EALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVE 193

Query: 234 KGIS---PDS-------------ISYIAVLSACSHLGWVEKGFYYFHSMF 267
           KGI    P+S             IS+ +++S     G  E+G   +  M 
Sbjct: 194 KGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMM 243


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 202/547 (36%), Positives = 307/547 (56%), Gaps = 51/547 (9%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           +V + N+LI     C R+ D+R +F +  + D +SW +MI G+ +NG   E + LF +M 
Sbjct: 207 NVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMR 266

Query: 70  QRN----DVSWNSIL---GGLV--------------------------------RFGSVD 90
             N      ++ S+L   GG++                                +  S+ 
Sbjct: 267 LENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIK 326

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
            A  VF +M  +++VSW  ++ G+ QNG  +EA+ +F +MQ+  +EP+   L S++S+CA
Sbjct: 327 SAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCA 386

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCA------ALIDMYAKCGSIDLAMQVFHSYGDKD 204
            L +L+ G       Q  C  L S L +      AL+ +Y KCGSI+ + ++F      D
Sbjct: 387 NLASLEEG------AQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVD 440

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
             ++T+ + G A  G + E   LFE+M + G  PD +++I VLSACS  G V+KG   F 
Sbjct: 441 EVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFE 500

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
           SM   H I P  DHY CM+DL  RAG LEEA  FI  MP  PD + W +LL +CR HRN 
Sbjct: 501 SMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLLSSCRFHRNM 560

Query: 325 EMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIEL 384
           E+G+     L++ + ++   YILLS+IY    K E    +RK MR + +++ PGCS I+ 
Sbjct: 561 EIGKWAAESLLKLEPHNTASYILLSSIYAAKGKWEEVANLRKGMRDKGLRKEPGCSWIKY 620

Query: 385 DGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHS 444
              VH F A D+S+  + +IY   E++  K+   GY  +  SV+ D+++ EK  ++ +HS
Sbjct: 621 KNQVHIFSADDQSNPFSDQIYSELEKLNYKMVQEGYVPDMNSVLHDVDDSEKIKMLNHHS 680

Query: 445 EKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGS 504
           EKLA+AFGLI   PG  IR+VKN+R+C DCH+A K +SK+ +R+I +RD   +H F+DG 
Sbjct: 681 EKLAIAFGLIFIPPGLPIRVVKNLRVCGDCHNATKYISKITQREILVRDAARFHLFKDGR 740

Query: 505 CSCLEYW 511
           CSC ++W
Sbjct: 741 CSCGDFW 747



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 89/272 (32%), Positives = 158/272 (58%), Gaps = 2/272 (0%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           + +++ Y + G +    + FD+MP++N V +N+++ GL+R   ++D+ ++F  M ++  +
Sbjct: 181 SPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSI 240

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           SW  +I+GF QNG  +EA+ LFREM+  +LE +     S+L+AC  + AL  G  V++YI
Sbjct: 241 SWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYI 300

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
            +   + +  + +AL+DMY KC SI  A  VF     K+V ++T+ + G   NG+S EA 
Sbjct: 301 IRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAV 360

Query: 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL 285
           ++F +M++ GI PD  +  +V+S+C++L  +E+G   FH    V G+   +     +V L
Sbjct: 361 KIFCDMQNNGIEPDDFTLGSVISSCANLASLEEG-AQFHCRALVSGLISFITVSNALVTL 419

Query: 286 LGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
            G+ G +E++    + M    D V W  L+  
Sbjct: 420 YGKCGSIEDSHRLFSEMSY-VDEVSWTALVSG 450



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 138/308 (44%), Gaps = 46/308 (14%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N++++ Y +   I    ++FD+MPQRN  SWN++L    +   + +  RVF+ MP R +V
Sbjct: 48  NNLVSAYAKFDRITYARRVFDQMPQRNLYSWNTLLSSYSKLACLPEMERVFHAMPTRDMV 107

Query: 106 SWVVLISGFAQNGRPKEALALFREM-QSLDLEPNSAILVSLLSACAQLGALDYGNWVYSY 164
           SW  LIS +A  G   +++  +  M  +     N   L ++L   ++ G +  G  V+ +
Sbjct: 108 SWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTMLILASKQGCVHLGLQVHGH 167

Query: 165 IQKKCIKLDSILCAALIDMYAK-------------------------------CGSIDLA 193
           + K   +    + + L+DMY+K                               C  I+ +
Sbjct: 168 VVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDS 227

Query: 194 MQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL 253
            Q+F+   +KD  ++T+ I G   NG   EA +LF  M+ + +  D  ++ +VL+AC  +
Sbjct: 228 RQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGV 287

Query: 254 GWVEKGFYYFHSMFDVHGIKPELDHY------ACMVDLLGRAGLLEEAENFIASMPMKPD 307
             +++G         VH      D+       + +VD+  +   ++ AE     M  K +
Sbjct: 288 MALQEG-------KQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCK-N 339

Query: 308 NVIWGTLL 315
            V W  +L
Sbjct: 340 VVSWTAML 347



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 116/234 (49%), Gaps = 44/234 (18%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++  +  ++FV ++L+  Y  C  ++ A  VF + +  +VVSW +M+ GY +NG   E 
Sbjct: 300 IIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEA 359

Query: 62  LKLFDKMP----QRNDVSWNSILG---------------------GLVRF---------- 86
           +K+F  M     + +D +  S++                      GL+ F          
Sbjct: 360 VKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTL 419

Query: 87  ----GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
               GS++D+ R+F++M     VSW  L+SG+AQ G+  E L LF  M +   +P+    
Sbjct: 420 YGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTF 479

Query: 143 VSLLSACAQLGALDYGNWVYSYIQK--KCIKL-DSILCAALIDMYAKCGSIDLA 193
           + +LSAC++ G +  GN ++  + K  + I + D   C  +ID++++ G ++ A
Sbjct: 480 IGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHYTC--MIDLFSRAGRLEEA 531


>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 694

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 201/543 (37%), Positives = 314/543 (57%), Gaps = 44/543 (8%)

Query: 12  FVKNSLIQFYSVCGRVRDARWVFDESDDL---DVVSWNSMINGYVRNGEILEGLKLFDKM 68
           +VK++L+  YS C  V  A  V D        D+ S+NS++N  V +G   E +++  +M
Sbjct: 153 YVKSALVHMYSRCSHVELALQVLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLRRM 212

Query: 69  PQRNDVSWNSIL--------------------------GGLV--------------RFGS 88
                V+W+ +                           GGL+              + G 
Sbjct: 213 VDEC-VAWDHVTYVGVMGLCAQIRDLQLGLRVHARLLRGGLMFDEFVGSMLIDMYGKCGE 271

Query: 89  VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148
           V +A  VF+ +  R++V W  L++ + QNG  +E+L LF  M      PN      LL+A
Sbjct: 272 VLNARNVFDGLQNRNVVVWTALMTAYLQNGYFEESLNLFTCMDREGTLPNEYTFAVLLNA 331

Query: 149 CAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAY 208
           CA + AL +G+ +++ ++K   K   I+  ALI+MY+K GSID +  VF     +D+  +
Sbjct: 332 CAGIAALRHGDLLHARVEKLGFKNHVIVRNALINMYSKSGSIDSSYNVFTDMIYRDIITW 391

Query: 209 TSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD 268
            + I G + +G   +A ++F++M S    P+ +++I VLSA SHLG V++GFYY + +  
Sbjct: 392 NAMICGYSHHGLGKQALQVFQDMVSAEECPNYVTFIGVLSAYSHLGLVKEGFYYLNHLMR 451

Query: 269 VHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQ 328
              I+P L+HY CMV LL RAGLL+EAENF+ +  +K D V W TLL AC VHRN ++G+
Sbjct: 452 NFKIEPGLEHYTCMVALLSRAGLLDEAENFMKTTQVKWDVVAWRTLLNACHVHRNYDLGR 511

Query: 329 RIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVV 388
           RI   +++ D +  G Y LLSN+Y +  + +    +RK MR+R IK+ PG S +++   +
Sbjct: 512 RIAESVLQMDPHDVGTYTLLSNMYAKARRWDGVVTIRKLMRERNIKKEPGASWLDIRNDI 571

Query: 389 HEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLA 448
           H FL+   +H ++ +IY+  ++++  IK  GY     SV+ D+E+E+KE  + YHSEKLA
Sbjct: 572 HVFLSEGSNHPESIQIYKKVQQLLALIKPLGYVPNIASVLHDVEDEQKEGYLSYHSEKLA 631

Query: 449 LAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCL 508
           LA+GL+     + IRI+KN+R+C DCH+A+KL+SKV  R I +RD   +HHF DGSC+CL
Sbjct: 632 LAYGLMKIPSPAPIRIIKNLRMCDDCHTAVKLISKVTNRLIIVRDANRFHHFRDGSCTCL 691

Query: 509 EYW 511
           ++W
Sbjct: 692 DHW 694



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 81/344 (23%), Positives = 152/344 (44%), Gaps = 45/344 (13%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDV 74
           NSL+  Y  CG++  AR +FD     +VVSWN ++ GY+  G  LE L LF  M    + 
Sbjct: 54  NSLVHLYVKCGQLGLARNLFDAMPLRNVVSWNVLMAGYLHGGNHLEVLVLFKNMVSLQNA 113

Query: 75  SWNSIL---------------------GGLVRFG-------------------SVDDACR 94
             N  +                     G L +FG                    V+ A +
Sbjct: 114 CPNEYVFTTALSACSHGGRVKEGMQCHGLLFKFGLVCHQYVKSALVHMYSRCSHVELALQ 173

Query: 95  VFNQMPKR---SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           V + +P      + S+  +++   ++GR +EA+ + R M    +  +    V ++  CAQ
Sbjct: 174 VLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLRRMVDECVAWDHVTYVGVMGLCAQ 233

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSA 211
           +  L  G  V++ + +  +  D  + + LIDMY KCG +  A  VF    +++V  +T+ 
Sbjct: 234 IRDLQLGLRVHARLLRGGLMFDEFVGSMLIDMYGKCGEVLNARNVFDGLQNRNVVVWTAL 293

Query: 212 IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG 271
           +     NG+  E+  LF  M  +G  P+  ++  +L+AC+ +  +  G    H+  +  G
Sbjct: 294 MTAYLQNGYFEESLNLFTCMDREGTLPNEYTFAVLLNACAGIAALRHG-DLLHARVEKLG 352

Query: 272 IKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
            K  +     ++++  ++G ++ + N    M  + D + W  ++
Sbjct: 353 FKNHVIVRNALINMYSKSGSIDSSYNVFTDMIYR-DIITWNAMI 395



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 131/302 (43%), Gaps = 60/302 (19%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++    +D FV + LI  Y  CG V +AR VFD   + +VV W +++  Y++NG   E 
Sbjct: 247 LLRGGLMFDEFVGSMLIDMYGKCGEVLNARNVFDGLQNRNVVVWTALMTAYLQNGYFEES 306

Query: 62  LKLF--------------------------------------DKMPQRNDV-SWNSILGG 82
           L LF                                      +K+  +N V   N+++  
Sbjct: 307 LNLFTCMDREGTLPNEYTFAVLLNACAGIAALRHGDLLHARVEKLGFKNHVIVRNALINM 366

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + GS+D +  VF  M  R +++W  +I G++ +G  K+AL +F++M S +  PN    
Sbjct: 367 YSKSGSIDSSYNVFTDMIYRDIITWNAMICGYSHHGLGKQALQVFQDMVSAEECPNYVTF 426

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSIL--CAALIDMYAKCGSIDLAMQVFHSY 200
           + +LSA + LG +  G +  +++ +   K++  L     ++ + ++ G +D A     + 
Sbjct: 427 IGVLSAYSHLGLVKEGFYYLNHLMRN-FKIEPGLEHYTCMVALLSRAGLLDEAENFMKTT 485

Query: 201 GDK-DVSAYTSAIFG-----------------LAMNGHSIEAFELFENMKSKGISPDSIS 242
             K DV A+ + +                   L M+ H +  + L  NM +K    D + 
Sbjct: 486 QVKWDVVAWRTLLNACHVHRNYDLGRRIAESVLQMDPHDVGTYTLLSNMYAKARRWDGVV 545

Query: 243 YI 244
            I
Sbjct: 546 TI 547


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 195/549 (35%), Positives = 313/549 (57%), Gaps = 41/549 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+++  A DVFV  +L+  Y+    V ++R +F+     +V+SW ++I+GYV++ +  E 
Sbjct: 274 VIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQSRQEQEA 333

Query: 62  LKLFDKMPQRN---------------------------------------DVSWNSILGG 82
           +KLF  M   +                                       +   NS++  
Sbjct: 334 IKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQLHGQTIKLGLSTINCVGNSLINM 393

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             R G+++ A + FN + +++L+S+       A+     E+     E++   +  +    
Sbjct: 394 YARSGTMECARKAFNILFEKNLISYNTAADANAKALDSDESFN--HEVEHTGVGASPFTY 451

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
             LLS  A +G +  G  +++ I K     +  +  ALI MY+KCG+ + A+QVF+  G 
Sbjct: 452 ACLLSGAACIGTIVKGEQIHALIVKSGFGTNLCINNALISMYSKCGNKEAALQVFNDMGY 511

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           ++V  +TS I G A +G + +A ELF  M   G+ P+ ++YIAVLSACSH+G +++ + +
Sbjct: 512 RNVITWTSIISGFAKHGFATKALELFYEMLEIGVKPNEVTYIAVLSACSHVGLIDEAWKH 571

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F+SM   H I P ++HYACMVDLLGR+GLL EA  FI SMP   D ++W T LG+CRVHR
Sbjct: 572 FNSMHYNHSISPRMEHYACMVDLLGRSGLLLEAIEFINSMPFDADALVWRTFLGSCRVHR 631

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           N ++G+     ++E + +    YILLSN+Y    + ++   +RK+M+++K+ +  G S I
Sbjct: 632 NTKLGEHAAKKILEREPHDPATYILLSNLYASEGRWDDVAALRKSMKQKKLIKETGYSWI 691

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E+D  VH+F  GD SH + ++IY   +E+  KIKN GY   T  V+ D+E+E+KE  +  
Sbjct: 692 EVDNQVHKFHVGDTSHPQARKIYDELDELALKIKNLGYIPNTDFVLHDVEDEQKEQYLFQ 751

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSEK+A+A+ LI T     IR+ KN+R+C DCH+A+K +S V  R+I +RD   +HH +D
Sbjct: 752 HSEKIAVAYALISTPKPKPIRVFKNLRVCGDCHTAIKYISIVTGREIVVRDANRFHHIKD 811

Query: 503 GSCSCLEYW 511
           G CSC +YW
Sbjct: 812 GKCSCNDYW 820



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 155/346 (44%), Gaps = 59/346 (17%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDE--SDDLDVVSWNSMINGYVRNGEIL 59
           ++ +    D  + NSLI  YS CG   +A  +F        D+VSW+++I+ +  N    
Sbjct: 65  LIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHHKRDLVSWSAIISCFANNSMES 124

Query: 60  EGLKLFDKMPQ--RNDVSWN---------------------SILGGLVRFGSVDD----- 91
             L  F  M Q  RN +  N                     +I   L++ G  D      
Sbjct: 125 RALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTGLAIFAFLLKTGYFDSHVCVG 184

Query: 92  ----------------ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDL 135
                           A  VF++M  ++LV+W ++I+ ++Q G   +A+ LF  +   + 
Sbjct: 185 CALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEY 244

Query: 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ 195
            P+   L SLLSAC +L     G  ++S++ +  +  D  +   L+DMYAK  +++ + +
Sbjct: 245 TPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRK 304

Query: 196 VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGW 255
           +F++    +V ++T+ I G   +    EA +LF NM    ++P+  ++ +VL AC+ L  
Sbjct: 305 IFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPD 364

Query: 256 VEKGFYYFHSMFDVHG--IKPELDHYAC----MVDLLGRAGLLEEA 295
              G         +HG  IK  L    C    ++++  R+G +E A
Sbjct: 365 FGIG-------KQLHGQTIKLGLSTINCVGNSLINMYARSGTMECA 403



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 83/158 (52%), Gaps = 12/158 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++VK+ F  ++ + N+LI  YS CG    A  VF++    +V++W S+I+G+ ++G   +
Sbjct: 473 LIVKSGFGTNLCINNALISMYSKCGNKEAALQVFNDMGYRNVITWTSIISGFAKHGFATK 532

Query: 61  GLKLFDKMPQ----RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLI 111
            L+LF +M +     N+V++ ++L      G +D+A + FN M     +S     +  ++
Sbjct: 533 ALELFYEMLEIGVKPNEVTYIAVLSACSHVGLIDEAWKHFNSMHYNHSISPRMEHYACMV 592

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
               ++G   EA+     + S+  + ++ +  + L +C
Sbjct: 593 DLLGRSGLLLEAIEF---INSMPFDADALVWRTFLGSC 627



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 125/292 (42%), Gaps = 43/292 (14%)

Query: 125 ALFREMQSLDLEPNSAILVS--LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182
           +L + +  LDL   S ++ S  LL AC + G L+ G  ++  +    + LDS+L  +LI 
Sbjct: 23  SLRKAISRLDLTTTSPLIKSSLLLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLIT 82

Query: 183 MYAKCGSIDLAMQVFHSYG--DKDVSAYTSAIFGLAMNGHSIEAFELFENM---KSKGIS 237
           +Y+KCG  + A+ +F + G   +D+ ++++ I   A N     A   F +M       I 
Sbjct: 83  LYSKCGDWENALSIFRNMGHHKRDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIY 142

Query: 238 PDSISYIAVLSACSHLGWVEKGFY---------YFHS----------MFDVHGIKPE--- 275
           P+   + A+L +CS+  +   G           YF S          MF   G+  +   
Sbjct: 143 PNEYCFTALLRSCSNPLFFTTGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSAR 202

Query: 276 ----------LDHYACMVDLLGRAGLLEEAENFIASMPM---KPDNVIWGTLLGACRVHR 322
                     L  +  M+    + GLL++A +    + +    PD     +LL AC    
Sbjct: 203 MVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELE 262

Query: 323 NAEMGQRIGNMLIESDQNHDGRY-ILLSNIYVETLKGENAEEVRKTMRKRKI 373
              +G+++ + +I S    D      L ++Y ++   EN+ ++  TM    +
Sbjct: 263 FFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNV 314


>gi|15239085|ref|NP_201360.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180382|sp|Q9LSL8.1|PP446_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65570
 gi|8978285|dbj|BAA98176.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010689|gb|AED98072.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 214/543 (39%), Positives = 306/543 (56%), Gaps = 45/543 (8%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM- 68
           +VFV ++L+  Y   G+ R+A+ V D  ++ DVV   ++I GY + GE  E +K F  M 
Sbjct: 200 NVFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSML 259

Query: 69  ---PQRNDVSWNSIL---GGLVRFGS--------------------------------VD 90
               Q N+ ++ S+L   G L   G+                                VD
Sbjct: 260 VEKVQPNEYTYASVLISCGNLKDIGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVD 319

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           D+ RVF  +   + VSW  LISG  QNGR + AL  FR+M    ++PNS  L S L  C+
Sbjct: 320 DSLRVFKCIEYPNQVSWTSLISGLVQNGREEMALIEFRKMMRDSIKPNSFTLSSALRGCS 379

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
            L   + G  ++  + K     D    + LID+Y KCG  D+A  VF +  + DV +  +
Sbjct: 380 NLAMFEEGRQIHGIVTKYGFDRDKYAGSGLIDLYGKCGCSDMARLVFDTLSEVDVISLNT 439

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I+  A NG   EA +LFE M + G+ P+ ++ ++VL AC++   VE+G   F S F   
Sbjct: 440 MIYSYAQNGFGREALDLFERMINLGLQPNDVTVLSVLLACNNSRLVEEGCELFDS-FRKD 498

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
            I    DHYACMVDLLGRAG LEEAE  + +  + PD V+W TLL AC+VHR  EM +RI
Sbjct: 499 KIMLTNDHYACMVDLLGRAGRLEEAE-MLTTEVINPDLVLWRTLLSACKVHRKVEMAERI 557

Query: 331 GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHE 390
              ++E +   +G  IL+SN+Y  T K     E++  M+  K+K+ P  S +E++   H 
Sbjct: 558 TRKILEIEPGDEGTLILMSNLYASTGKWNRVIEMKSKMKDMKLKKNPAMSWVEINKETHT 617

Query: 391 FLAGDR-SHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMF-DIEEEEKETVIGYHSEKLA 448
           F+AGD  SH  +++I +  EE++KK K+ GY VE +S +F D+EE  KE  +  HSEKLA
Sbjct: 618 FMAGDLFSHPNSEQILENLEELIKKSKDLGY-VEDKSCVFQDMEETAKERSLHQHSEKLA 676

Query: 449 LAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCL 508
           +AF  +    G  IRI+KN+R+C DCHS +K+VS+V KR+I  RD K +HHF DGSCSC 
Sbjct: 677 IAFA-VWRNVGGSIRILKNLRVCVDCHSWIKIVSRVMKREIICRDSKRFHHFRDGSCSCG 735

Query: 509 EYW 511
           +YW
Sbjct: 736 DYW 738



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 122/256 (47%), Gaps = 3/256 (1%)

Query: 73  DVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQS 132
           ++S + ++   ++ G +D A +VF+ M +R +V+W  LI+   ++ R KEA+ ++R M +
Sbjct: 99  EISGSKLVDASLKCGDIDYARQVFDGMSERHIVTWNSLIAYLIKHRRSKEAVEMYRLMIT 158

Query: 133 LDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILC-AALIDMYAKCGSID 191
            ++ P+   L S+  A + L         +       +++ ++   +AL+DMY K G   
Sbjct: 159 NNVLPDEYTLSSVFKAFSDLSLEKEAQRSHGLAVILGLEVSNVFVGSALVDMYVKFGKTR 218

Query: 192 LAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS 251
            A  V     +KDV   T+ I G +  G   EA + F++M  + + P+  +Y +VL +C 
Sbjct: 219 EAKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLVEKVQPNEYTYASVLISCG 278

Query: 252 HLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIW 311
           +L  +  G    H +    G +  L     ++ +  R  L++++      +   P+ V W
Sbjct: 279 NLKDIGNG-KLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSLRVFKCIEY-PNQVSW 336

Query: 312 GTLLGACRVHRNAEMG 327
            +L+     +   EM 
Sbjct: 337 TSLISGLVQNGREEMA 352



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 103/233 (44%), Gaps = 41/233 (17%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++VK+ F   +  + SL+  Y  C  V D+  VF   +  + VSW S+I+G V+NG    
Sbjct: 292 LMVKSGFESALASQTSLLTMYLRCSLVDDSLRVFKCIEYPNQVSWTSLISGLVQNGREEM 351

Query: 61  GLKLFDKMPQRNDVSWNSIL------------------------------------GGLV 84
            L  F KM  R+ +  NS                                       GL+
Sbjct: 352 ALIEFRKM-MRDSIKPNSFTLSSALRGCSNLAMFEEGRQIHGIVTKYGFDRDKYAGSGLI 410

Query: 85  ----RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
               + G  D A  VF+ + +  ++S   +I  +AQNG  +EAL LF  M +L L+PN  
Sbjct: 411 DLYGKCGCSDMARLVFDTLSEVDVISLNTMIYSYAQNGFGREALDLFERMINLGLQPNDV 470

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLA 193
            ++S+L AC     ++ G  ++   +K  I L +   A ++D+  + G ++ A
Sbjct: 471 TVLSVLLACNNSRLVEEGCELFDSFRKDKIMLTNDHYACMVDLLGRAGRLEEA 523



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 78/157 (49%), Gaps = 12/157 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V K  F  D +  + LI  Y  CG    AR VFD   ++DV+S N+MI  Y +NG   E
Sbjct: 393 IVTKYGFDRDKYAGSGLIDLYGKCGCSDMARLVFDTLSEVDVISLNTMIYSYAQNGFGRE 452

Query: 61  GLKLFDKM----PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV----SWVVLIS 112
            L LF++M     Q NDV+  S+L        V++ C +F+   K  ++     +  ++ 
Sbjct: 453 ALDLFERMINLGLQPNDVTVLSVLLACNNSRLVEEGCELFDSFRKDKIMLTNDHYACMVD 512

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
              + GR +EA  L  E+    + P+  +  +LLSAC
Sbjct: 513 LLGRAGRLEEAEMLTTEV----INPDLVLWRTLLSAC 545


>gi|147771387|emb|CAN76239.1| hypothetical protein VITISV_016538 [Vitis vinifera]
          Length = 503

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 177/441 (40%), Positives = 280/441 (63%), Gaps = 1/441 (0%)

Query: 72  NDVSWNS-ILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM 130
           +D+  NS IL   ++ G + +A  VFN +     V+W  +ISG   NG   +AL ++  M
Sbjct: 63  SDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRM 122

Query: 131 QSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSI 190
           +   + P+     +L+ A + + AL+ G  +++ + K     D  +  +L+DMYAKCG+I
Sbjct: 123 RQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNI 182

Query: 191 DLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250
           + A ++F     ++++ + + + GLA +G++ EA  LF++MKS GI PD +S+I +LSAC
Sbjct: 183 EDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSAC 242

Query: 251 SHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVI 310
           SH G   + + Y HSM + +GI+PE++HY+C+VD LGRAGL++EA+  I +MP K    I
Sbjct: 243 SHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASI 302

Query: 311 WGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370
              LLGACR+  + E G+R+   L   +      Y+LLSNIY    + ++  + RK M++
Sbjct: 303 NRALLGACRIQGDVEXGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKR 362

Query: 371 RKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFD 430
           + +K+ PG S I++  ++H F+  DRSH +   IY   EE++K I+  GY  +T  V+ D
Sbjct: 363 KNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLLD 422

Query: 431 IEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKIS 490
           +E+EEKE  + YHSEKLA+A+GLI T   + IR++KN+R+C DCH+A+K +SKVF+R+I 
Sbjct: 423 VEDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFEREIV 482

Query: 491 IRDRKHYHHFEDGSCSCLEYW 511
           +RD   +HHF DG CSC +YW
Sbjct: 483 LRDANRFHHFRDGVCSCGDYW 503



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 111/252 (44%), Gaps = 40/252 (15%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +K  F  D+ V + ++  Y  CG + +A  VF+     D V+W SMI+G V NG   + L
Sbjct: 57  IKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQAL 116

Query: 63  KLFDKMPQ---------------------------------------RNDVSWNSILGGL 83
           +++ +M Q                                        +     S++   
Sbjct: 117 RIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMY 176

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
            + G+++DA R+F +M  R++  W  ++ G AQ+G  +EA+ LF+ M+S  +EP+    +
Sbjct: 177 AKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFI 236

Query: 144 SLLSACAQLGALDYG-NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            +LSAC+  G       +++S      I+ +    + L+D   + G +  A +V  +   
Sbjct: 237 GILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPF 296

Query: 203 KDVSAYTSAIFG 214
           K  ++   A+ G
Sbjct: 297 KASASINRALLG 308



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 99/216 (45%), Gaps = 2/216 (0%)

Query: 110 LISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC 169
           ++ G+      K+AL LF  +     + +   L +   AC  L  LD G  ++++  K  
Sbjct: 1   MMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAG 60

Query: 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFE 229
              D  + + ++DMY KCG +  A  VF+     D  A+TS I G   NG+  +A  ++ 
Sbjct: 61  FDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYH 120

Query: 230 NMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRA 289
            M+   + PD  ++  ++ A S +  +E+G     ++  +  +       + +VD+  + 
Sbjct: 121 RMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTS-LVDMYAKC 179

Query: 290 GLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAE 325
           G +E+A      M ++ +  +W  +L     H NAE
Sbjct: 180 GNIEDAYRLFKKMNVR-NIALWNAMLVGLAQHGNAE 214



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 79/171 (46%), Gaps = 16/171 (9%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K     D FV  SL+  Y+ CG + DA  +F + +  ++  WN+M+ G  ++G   E 
Sbjct: 157 VIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEA 216

Query: 62  LKLFDKM------PQRNDVSWNSILGGLVRFGSVDDACRVFNQMP-----KRSLVSWVVL 110
           + LF  M      P R  VS+  IL      G   +A    + MP     +  +  +  L
Sbjct: 217 VNLFKSMKSHGIEPDR--VSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCL 274

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161
           +    + G  +EA  +   ++++  + +++I  +LL AC   G ++ G  V
Sbjct: 275 VDALGRAGLVQEADKV---IETMPFKASASINRALLGACRIQGDVEXGKRV 322


>gi|225456313|ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic [Vitis vinifera]
          Length = 704

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 194/549 (35%), Positives = 322/549 (58%), Gaps = 40/549 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++ +    D +++N ++  +  CG + DAR +FDE  + +++SWN++I G V  G+  E 
Sbjct: 157 MINSGLDPDEYLRNRVLLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEA 216

Query: 62  LKLFDKM----------------------------PQRNDVSWNSILGGLV--------- 84
            +LF  M                             Q +  S  + +GG V         
Sbjct: 217 FRLFLMMWQDFSDAGSRMFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDM 276

Query: 85  --RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + GS++DA  VF+QMP+++ V W  +I+G+A +G  +EAL+++ EM+   ++ ++   
Sbjct: 277 YSKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTF 336

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
             ++  CA+L +L++    ++ + +    LD +   AL+D+Y+K G I+ A  VF     
Sbjct: 337 SIIIRICARLASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPH 396

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           K+V ++ + I G   +G  +EA E+FE M  +G+ P+ ++++AVLSACS+ G  ++G+  
Sbjct: 397 KNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEI 456

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F SM   H IKP   HYACM++LLGR GLL+EA   I   P KP   +W  LL ACRVH+
Sbjct: 457 FESMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIKDAPFKPTVNMWAALLTACRVHK 516

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           N E+G+     L          Y++L NIY  + + E A  V +T+++R ++  P CS I
Sbjct: 517 NFELGKFAAEKLYGMGPEKLSNYVVLLNIYNRSGRLEEAAAVIQTLKRRGLRMLPACSWI 576

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E+    + F++GD+ H +++EIYQ  +E++ +I  +GY  + + ++ D++E+E E V+ Y
Sbjct: 577 EIKKQPYGFISGDKCHAQSKEIYQKLDELMLEISKHGYVPQDKFLLPDVDEQE-ERVLLY 635

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSEKLA+AFGLI T   + ++IV++ RIC DCHSA+KL++ V +R+I +RD   +HHF+D
Sbjct: 636 HSEKLAIAFGLINTSDWTPLQIVQSHRICGDCHSAIKLIALVTRREIVVRDASRFHHFKD 695

Query: 503 GSCSCLEYW 511
           GSCSC +YW
Sbjct: 696 GSCSCGDYW 704



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 106/373 (28%), Positives = 171/373 (45%), Gaps = 38/373 (10%)

Query: 5   NSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKL 64
           +S  YD  V ++ I   S+ G  +   ++ +   D D    N ++  +V+ G +++  +L
Sbjct: 130 DSETYDALV-SACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARRL 188

Query: 65  FDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEAL 124
           FD+MP++N +SWN+I+GGLV  G   +A R+F       L+ W      F+  G      
Sbjct: 189 FDEMPEKNILSWNTIIGGLVDAGDYFEAFRLF-------LMMW----QDFSDAG------ 231

Query: 125 ALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMY 184
                         S + V+++ A A LG +  G  ++S   K  +  D  +  ALIDMY
Sbjct: 232 --------------SRMFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMY 277

Query: 185 AKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYI 244
           +KCGSI+ A  VF    +K    + S I G A++G+S EA  ++  M+  G+  D+ ++ 
Sbjct: 278 SKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFS 337

Query: 245 AVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPM 304
            ++  C+ L  +E      H+    HG   ++     +VDL  + G +E+A++    MP 
Sbjct: 338 IIIRICARLASLEHA-KQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPH 396

Query: 305 KPDNVI-WGTLLGACRVH-RNAEMGQRIGNMLIESD-QNHDGRYILLSNIYVETLKGENA 361
           K  NVI W  L+     H R  E  +    ML E    NH     +LS      L     
Sbjct: 397 K--NVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRGW 454

Query: 362 EEVRKTMRKRKIK 374
           E      R  KIK
Sbjct: 455 EIFESMSRDHKIK 467


>gi|242081563|ref|XP_002445550.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
 gi|241941900|gb|EES15045.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
          Length = 595

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 183/444 (41%), Positives = 270/444 (60%), Gaps = 3/444 (0%)

Query: 71  RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM 130
           R+ +   S++      G  D A ++F +MP R  V+W VLIS  A+N R K+AL LF EM
Sbjct: 152 RDALLATSLMACYANRGDGDGARKLFGEMPARDAVAWNVLISCCARNRRTKDALKLFEEM 211

Query: 131 QSLD--LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCG 188
           +  D   EP+    + LL AC  LGALD+G  V++Y ++        +  +LI MY++CG
Sbjct: 212 RGRDSGAEPDDVTCILLLQACTSLGALDFGEQVWAYAEEHGYGAKLKVRNSLIAMYSRCG 271

Query: 189 SIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248
            +D A +VF     K V  +++ I GLA NG   +A   FE M    ++PD  ++  VLS
Sbjct: 272 CVDKAYRVFCGTPQKSVVTWSAMISGLAANGFGDDAISAFEEMIRSDVAPDEQTFTGVLS 331

Query: 249 ACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS-MPMKPD 307
           ACSH G V++GF +F  M   +G+KP + HY C+VDL+GRAGLL+EA   + + M + PD
Sbjct: 332 ACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAYELVTNEMKVAPD 391

Query: 308 NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKT 367
             IW TLLGACR+H + ++G+R+ + LIE      G Y+LL N Y    +     EVRK 
Sbjct: 392 ATIWRTLLGACRIHGHVDLGERVISNLIELKAQQAGDYVLLLNTYAAVGEWSKVSEVRKL 451

Query: 368 MRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSV 427
           M+++ I+  PGC+ +E +G V+EF+A D +H +  EIY+   EI K+++  GY     S 
Sbjct: 452 MQEKGIQTTPGCTTVEHNGEVYEFIADDDAHPRKVEIYEKLNEINKQLRIAGYVPNVSSE 511

Query: 428 MFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKR 487
           + D++ E KE+ + YHSEKLA+AF L+ T     IR+ KN+R+C DCH+  K+ S ++ R
Sbjct: 512 LHDLDSEGKESALTYHSEKLAIAFALLVTPQNRPIRLAKNLRVCVDCHNFTKVFSGIYNR 571

Query: 488 KISIRDRKHYHHFEDGSCSCLEYW 511
            + +RDR  +HHF+ G CSC +YW
Sbjct: 572 LVIVRDRTRFHHFQGGKCSCNDYW 595



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 124/301 (41%), Gaps = 77/301 (25%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VV      D  +  SL+  Y+  G    AR +F E    D V+WN +I+   RN    + 
Sbjct: 145 VVAEGHLRDALLATSLMACYANRGDGDGARKLFGEMPARDAVAWNVLISCCARNRRTKDA 204

Query: 62  LKLFDKMPQR------NDVS--------------------W---------------NSIL 80
           LKLF++M  R      +DV+                    W               NS++
Sbjct: 205 LKLFEEMRGRDSGAEPDDVTCILLLQACTSLGALDFGEQVWAYAEEHGYGAKLKVRNSLI 264

Query: 81  GGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
               R G VD A RVF   P++S+V+W  +ISG A NG   +A++ F EM   D+ P+  
Sbjct: 265 AMYSRCGCVDKAYRVFCGTPQKSVVTWSAMISGLAANGFGDDAISAFEEMIRSDVAPDEQ 324

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQ-KKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
               +LSAC+  G +D G   +  ++ +  +K +      ++D+  + G +D        
Sbjct: 325 TFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLD-------- 376

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFEN-MKSKGISPDSISYIAVLSACSHLGWVEK 258
                                  EA+EL  N MK   ++PD+  +  +L AC   G V+ 
Sbjct: 377 -----------------------EAYELVTNEMK---VAPDATIWRTLLGACRIHGHVDL 410

Query: 259 G 259
           G
Sbjct: 411 G 411



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 94/197 (47%), Gaps = 18/197 (9%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           ++ +   + V+NSLI  YS CG V  A  VF  +    VV+W++MI+G   NG   + + 
Sbjct: 250 EHGYGAKLKVRNSLIAMYSRCGCVDKAYRVFCGTPQKSVVTWSAMISGLAANGFGDDAIS 309

Query: 64  LFDKMPQRNDV-----SWNSILGGLVRFGSVDDACRVFNQMP-----KRSLVSWVVLISG 113
            F++M  R+DV     ++  +L      G VD+  R F+ M      K ++  +  ++  
Sbjct: 310 AFEEM-IRSDVAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDL 368

Query: 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYS-YIQKKCIKL 172
             + G   EA  L      + + P++ I  +LL AC   G +D G  V S  I+ K  + 
Sbjct: 369 MGRAGLLDEAYELV--TNEMKVAPDATIWRTLLGACRIHGHVDLGERVISNLIELKAQQA 426

Query: 173 -DSILCAALIDMYAKCG 188
            D +L   L++ YA  G
Sbjct: 427 GDYVL---LLNTYAAVG 440


>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
 gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 195/510 (38%), Positives = 289/510 (56%), Gaps = 39/510 (7%)

Query: 41  DVVSWNSMINGYVRNGEILEGLKLFDKMPQR-----------------------NDVSW- 76
           D VSWNS+I G VR G   + L  F KM  R                       N +S  
Sbjct: 5   DEVSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISVH 64

Query: 77  ---------------NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
                          N+++    + G +D A  VF++M  + +VSW  L++G++ NG  +
Sbjct: 65  CLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYE 124

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
           EA+ LF +M+   + P+   + S+LSACA+L  +D+G  +++ + K  ++    +  +L+
Sbjct: 125 EAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDNSLV 184

Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
            MYAKCGSI  A + F +   +DV ++T+ I G A NG    + + ++ M + G  PD I
Sbjct: 185 TMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPDYI 244

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
           ++I +L ACSH G +  G  YF +M  V+GIKP  +HYACM+DLLGR+G L EA+  +  
Sbjct: 245 TFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKGLLNQ 304

Query: 302 MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361
           M + PD V+W  LL ACRVH+  E+G+     L E +  +   Y++LSN+Y    K E+A
Sbjct: 305 MVVAPDAVVWKALLAACRVHKELELGEMAAKNLFELEPMNSMPYVMLSNMYSAAGKWEDA 364

Query: 362 EEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYN 421
             +R+ MR R I + PG S IE +  V  F++ DR+H    EIY   +EI+  IK  GY 
Sbjct: 365 ARIRRLMRSRGICKEPGYSWIETNSKVSTFMSEDRNHPLRNEIYSKIDEIIMLIKEAGYV 424

Query: 422 VETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLV 481
            +    + D ++E KE  + YHSEKLA+AFGL+    G+ IRI KN+R+C DCH+AMK  
Sbjct: 425 PDMSFALHDTDDEVKELGLAYHSEKLAVAFGLLTVPQGAPIRIFKNLRVCGDCHTAMKYT 484

Query: 482 SKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           SKV+ R I +RD   +HHF +G CSC +YW
Sbjct: 485 SKVYARHIILRDSNCFHHFTEGRCSCGDYW 514



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 139/335 (41%), Gaps = 76/335 (22%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +++K  F     V N+LI  Y+  G++  A  VF +  D DVVSW S++ GY  NG   E
Sbjct: 66  LIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYEE 125

Query: 61  GLKLFDKM------PQRNDVSW---------------------------------NSILG 81
            +KLF KM      P +  V+                                  NS++ 
Sbjct: 126 AIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDNSLVT 185

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + GS+ DA R F+ MP R ++SW  LI G+AQNGR K +L  + +M +   +P+   
Sbjct: 186 MYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPDYIT 245

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQK-KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
            + LL AC+  G L  G   +  + K   IK      A +ID+  + G +          
Sbjct: 246 FIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKL---------- 295

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
                                 EA  L   M    ++PD++ + A+L+AC     +E G 
Sbjct: 296 ---------------------AEAKGLLNQMV---VAPDAVVWKALLAACRVHKELELGE 331

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA 295
               ++F++  +      Y  + ++   AG  E+A
Sbjct: 332 MAAKNLFELEPMNSM--PYVMLSNMYSAAGKWEDA 364


>gi|147770672|emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]
          Length = 704

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 194/549 (35%), Positives = 322/549 (58%), Gaps = 40/549 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++ +    D +++N ++  +  CG + DAR +FDE  + +++SWN++I G V  G+  E 
Sbjct: 157 MINSGLDPDEYLRNRVLLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEA 216

Query: 62  LKLFDKM----------------------------PQRNDVSWNSILGGLV--------- 84
            +LF  M                             Q +  S  + +GG V         
Sbjct: 217 FRLFLMMWQXFSDAGSRMFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDM 276

Query: 85  --RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + GS++DA  VF+QMP+++ V W  +I+G+A +G  +EAL+++ EM+   ++ ++   
Sbjct: 277 YSKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTF 336

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
             ++  CA+L +L++    ++ + +    LD +   AL+D+Y+K G I+ A  VF     
Sbjct: 337 SIIIRICARLASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPH 396

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           K+V ++ + I G   +G  +EA E+FE M  +G+ P+ ++++AVLSACS+ G  ++G+  
Sbjct: 397 KNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEI 456

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F SM   H IKP   HYACM++LLGR GLL+EA   I   P KP   +W  LL ACRVH+
Sbjct: 457 FESMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIKDAPFKPTVNMWAALLTACRVHK 516

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           N E+G+     L          Y++L NIY  + + E A  V +T+++R ++  P CS I
Sbjct: 517 NFELGKFAAEKLYGMGPEKLSNYVVLLNIYNXSGRLEEAAAVIQTLKRRGLRMLPACSWI 576

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E+    + F++GD+ H +++EIYQ  +E++ +I  +GY  + + ++ D++E+E E V+ Y
Sbjct: 577 EIKKQPYGFISGDKCHAQSKEIYQKLDELMLEISKHGYVPQXKFLLPDVDEQE-ERVLLY 635

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSEKLA+AFGLI T   + ++IV++ RIC DCHSA+KL++ V +R+I +RD   +HHF+D
Sbjct: 636 HSEKLAIAFGLINTSDWTPLQIVQSHRICGDCHSAIKLIALVTRREIVVRDASRFHHFKD 695

Query: 503 GSCSCLEYW 511
           GSCSC +YW
Sbjct: 696 GSCSCGDYW 704



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 106/373 (28%), Positives = 171/373 (45%), Gaps = 38/373 (10%)

Query: 5   NSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKL 64
           +S  YD  V ++ I   S+ G  +   ++ +   D D    N ++  +V+ G +++  +L
Sbjct: 130 DSETYDALV-SACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARRL 188

Query: 65  FDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEAL 124
           FD+MP++N +SWN+I+GGLV  G   +A R+F       L+ W      F+  G      
Sbjct: 189 FDEMPEKNILSWNTIIGGLVDAGDYFEAFRLF-------LMMW----QXFSDAG------ 231

Query: 125 ALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMY 184
                         S + V+++ A A LG +  G  ++S   K  +  D  +  ALIDMY
Sbjct: 232 --------------SRMFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMY 277

Query: 185 AKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYI 244
           +KCGSI+ A  VF    +K    + S I G A++G+S EA  ++  M+  G+  D+ ++ 
Sbjct: 278 SKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFS 337

Query: 245 AVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPM 304
            ++  C+ L  +E      H+    HG   ++     +VDL  + G +E+A++    MP 
Sbjct: 338 IIIRICARLASLEHA-KQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPH 396

Query: 305 KPDNVI-WGTLLGACRVH-RNAEMGQRIGNMLIESD-QNHDGRYILLSNIYVETLKGENA 361
           K  NVI W  L+     H R  E  +    ML E    NH     +LS      L     
Sbjct: 397 K--NVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRGW 454

Query: 362 EEVRKTMRKRKIK 374
           E      R  KIK
Sbjct: 455 EIFESMSRDHKIK 467


>gi|414879943|tpg|DAA57074.1| TPA: hypothetical protein ZEAMMB73_804341 [Zea mays]
          Length = 1056

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 203/556 (36%), Positives = 313/556 (56%), Gaps = 52/556 (9%)

Query: 8    AYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDV------VSWNSMINGYVRNGEILEG 61
            A D ++ ++L+  YS  G +R A  + DE+            ++NS+I+G  R+   +  
Sbjct: 501  AADAYLLSALLTAYSRLGCLRLAHQLLDETPIESTSHTTLRTAFNSLISGCARHSLPVAC 560

Query: 62   LKLFDKM------------------------PQRNDVSW-----------NSILGGLVRF 86
              LF +M                        PQ + ++            N ++    R 
Sbjct: 561  FALFRRMRAIAVRFDAVTLLALVPAAPLSVVPQVHALAAQVGLATETSVANCLMSTYARG 620

Query: 87   GSVDDAC--RVFNQMP--KRSLVSWVVLISGFAQNGRPKEALALFREMQSLD---LEPNS 139
            G+   A   RVF++MP   R LVSW  ++S  AQNG   +AL L+R M+S +   +EP++
Sbjct: 621  GAFGAALARRVFDEMPLASRDLVSWNAVLSAHAQNGLAVDALDLYRRMRSPEGSGVEPDA 680

Query: 140  AILVSLLSACAQLGALDYGNWVYSYIQKKC--IKLDSILCAALIDMYAKCGSIDLAMQVF 197
              +V +LS+ A LGA   G     Y+ ++    + +  LC ALI+ +A+CGS+  A Q+F
Sbjct: 681  VTIVGVLSSAAHLGARGVGFDAEHYVVQRLPGFRTNVQLCNALINFHARCGSLPRAQQLF 740

Query: 198  HSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVE 257
                 K + ++T+ I G  M+G+   A  LFE M S+GI PD+++ + VLSACSH G  +
Sbjct: 741  DEMPAKSIVSWTALITGHGMHGNGGVAVSLFERMVSEGIHPDNVAMVGVLSACSHAGLYD 800

Query: 258  KGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
            +G  YF +M  V+ ++P L+HY C+VDLLGRAG LEEA   I+SMPM  D  +WG LLGA
Sbjct: 801  EGRMYFSTMESVYKLRPTLEHYTCIVDLLGRAGRLEEARELISSMPMPADGAVWGALLGA 860

Query: 318  CRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAP 377
            C++H+N E+G+     ++E +  + G Y+L+SNIY +T + +    VR  MRKR +K+ P
Sbjct: 861  CKIHKNVEIGEEAFARVVELEPRNVGYYVLMSNIYTDTGQLDCVARVRAVMRKRGLKKEP 920

Query: 378  GCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFD--IEEEE 435
            GCS +E +G VH F+A D SH + + IY+    +   +K      E+   +    +E+E 
Sbjct: 921  GCSYVEHNGRVHLFMADDHSHPQARRIYELVTRLELMVKEKSGVRESVVAVPKGRMEKEA 980

Query: 436  KETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRK 495
             + ++G+HSEKLA+AFGL+ T+ GS I ++KN+R+C DCHS +K VS    R   +RD  
Sbjct: 981  AQPLVGFHSEKLAVAFGLLNTEAGSEIVVIKNLRVCGDCHSFLKAVSATTNRSFLVRDAS 1040

Query: 496  HYHHFEDGSCSCLEYW 511
             +H F+ G CSC +YW
Sbjct: 1041 RFHRFDGGVCSCKDYW 1056



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 127/270 (47%), Gaps = 19/270 (7%)

Query: 68  MPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSL------VSWVVLISGFAQNGRPK 121
           +P  +    +++L    R G +  A ++ ++ P  S        ++  LISG A++  P 
Sbjct: 499 LPAADAYLLSALLTAYSRLGCLRLAHQLLDETPIESTSHTTLRTAFNSLISGCARHSLPV 558

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
              ALFR M+++ +  ++  L++L+ A      L     V++   +  +  ++ +   L+
Sbjct: 559 ACFALFRRMRAIAVRFDAVTLLALVPA----APLSVVPQVHALAAQVGLATETSVANCLM 614

Query: 182 DMYAKCGSID--LAMQVFH--SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK--- 234
             YA+ G+    LA +VF       +D+ ++ + +   A NG +++A +L+  M+S    
Sbjct: 615 STYARGGAFGAALARRVFDEMPLASRDLVSWNAVLSAHAQNGLAVDALDLYRRMRSPEGS 674

Query: 235 GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD-VHGIKPELDHYACMVDLLGRAGLLE 293
           G+ PD+++ + VLS+ +HLG    GF   H +   + G +  +     +++   R G L 
Sbjct: 675 GVEPDAVTIVGVLSSAAHLGARGVGFDAEHYVVQRLPGFRTNVQLCNALINFHARCGSLP 734

Query: 294 EAENFIASMPMKPDNVIWGTLLGACRVHRN 323
            A+     MP K   V W  L+    +H N
Sbjct: 735 RAQQLFDEMPAK-SIVSWTALITGHGMHGN 763



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 97/226 (42%), Gaps = 17/226 (7%)

Query: 103 SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVY 162
           S  SW   +    + GR KE++AL R        P++  L + + +CA L        ++
Sbjct: 432 STESWSARVRTLTRLGRHKESIALLRH-GGPSPPPHALALPASVISCAALSLPTGVAQIH 490

Query: 163 SYIQKKCI--KLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS------AYTSAIFG 214
           +   K+ +    D+ L +AL+  Y++ G + LA Q+      +  S      A+ S I G
Sbjct: 491 ALAAKRGLLPAADAYLLSALLTAYSRLGCLRLAHQLLDETPIESTSHTTLRTAFNSLISG 550

Query: 215 LAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP 274
            A +   +  F LF  M++  +  D+++ +A++ A + L  V +     H++    G+  
Sbjct: 551 CARHSLPVACFALFRRMRAIAVRFDAVTLLALVPA-APLSVVPQ----VHALAAQVGLAT 605

Query: 275 ELDHYACMVDLLGRAGLLEE--AENFIASMPMKP-DNVIWGTLLGA 317
           E     C++    R G      A      MP+   D V W  +L A
Sbjct: 606 ETSVANCLMSTYARGGAFGAALARRVFDEMPLASRDLVSWNAVLSA 651



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 74/152 (48%), Gaps = 12/152 (7%)

Query: 7   FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFD 66
           F  +V + N+LI F++ CG +  A+ +FDE     +VSW ++I G+  +G     + LF+
Sbjct: 713 FRTNVQLCNALINFHARCGSLPRAQQLFDEMPAKSIVSWTALITGHGMHGNGGVAVSLFE 772

Query: 67  KMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMP-----KRSLVSWVVLISGFAQN 117
           +M       ++V+   +L      G  D+    F+ M      + +L  +  ++    + 
Sbjct: 773 RMVSEGIHPDNVAMVGVLSACSHAGLYDEGRMYFSTMESVYKLRPTLEHYTCIVDLLGRA 832

Query: 118 GRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
           GR +EA  L   + S+ +  + A+  +LL AC
Sbjct: 833 GRLEEAREL---ISSMPMPADGAVWGALLGAC 861


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 191/530 (36%), Positives = 309/530 (58%), Gaps = 19/530 (3%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + +K+SF   +   N+L+  YS CG +  A  VF++  + +VVSW SMI GY R+G    
Sbjct: 276 LAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDG 335

Query: 61  GLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWV----VLIS 112
            +KL  +M +     + V+  SIL    R GS+D+   V + +   ++ S +     L+ 
Sbjct: 336 AIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMD 395

Query: 113 GFAQNGRPKEALALFREMQSLD----------LEPNSAILVSLLSACAQLGALDYGNWVY 162
            +A+ G  + A ++F  M   D          L+P+S  +  +L ACA L AL+ G  ++
Sbjct: 396 MYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPACASLSALERGKEIH 455

Query: 163 SYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSI 222
            YI +     D  +  AL+D+Y KCG + LA  +F     KD+ ++T  I G  M+G+  
Sbjct: 456 GYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGN 515

Query: 223 EAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACM 282
           EA   F  M+  GI PD +S+I++L ACSH G +E+G+ +F+ M +   I+P+L+HYACM
Sbjct: 516 EAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACM 575

Query: 283 VDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD 342
           VDLL R G L +A  F+ ++P+ PD  IWG LL  CR + + E+ +++   + E +  + 
Sbjct: 576 VDLLSRTGNLSKAYEFMETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPENT 635

Query: 343 GRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDR-SHEKT 401
           G Y+LL+NIY E  K E  + +R+ + K+ +++ PGCS IE+ G V+ F++G+  SH  +
Sbjct: 636 GYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHS 695

Query: 402 QEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSV 461
           + I    +++ +K+K  G+  +T+  + + +E +KE  +  HSEKLA+AFGL+   P   
Sbjct: 696 KNIESLLKKMRRKMKEEGHFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKT 755

Query: 462 IRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           IR+ KN+R+C DCH   K +SK  +R+I +RD   +HHF+DG CSC  +W
Sbjct: 756 IRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKDGYCSCRGFW 805



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 165/316 (52%), Gaps = 13/316 (4%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++  NS   D  +   L+ FY+ CG +++ R VFD  +  +V  WN M++ Y + G+  E
Sbjct: 124 IIKSNSVGVDGALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKE 183

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
            + LF  M ++            +     + A  +F+++  R ++SW  +ISG+  NG  
Sbjct: 184 SICLFKIMVEKG-----------IEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLT 232

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
           +  L ++++M  L ++ + A ++S+L  CA  G L  G  V+S   K   +        L
Sbjct: 233 ERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTL 292

Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           +DMY+KCG +D A++VF   G+++V ++TS I G   +G S  A +L + M+ +G+  D 
Sbjct: 293 LDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDV 352

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
           ++  ++L AC+  G ++ G    H     + ++  L     ++D+  + G +E A +  +
Sbjct: 353 VAITSILHACARSGSLDNG-KDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFS 411

Query: 301 SMPMKPDNVIWGTLLG 316
           +M +K D + W T++G
Sbjct: 412 TMVVK-DIISWNTMIG 426



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 72/170 (42%), Gaps = 18/170 (10%)

Query: 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD 173
           F Q G  + A+ L    Q  +LE  +    S+L  CA L +   G  V+S I+   + +D
Sbjct: 76  FCQLGDLENAMELICMCQKSELETKT--YGSVLQLCAGLKSFTDGKKVHSIIKSNSVGVD 133

Query: 174 SILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKS 233
             L   L+  YA CG +    +VF +   K+V  +   +   A  G   E+  LF+ M  
Sbjct: 134 GALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVE 193

Query: 234 KGIS---PDS-------------ISYIAVLSACSHLGWVEKGFYYFHSMF 267
           KGI    P+S             IS+ +++S     G  E+G   +  M 
Sbjct: 194 KGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMM 243


>gi|357160830|ref|XP_003578890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Brachypodium distachyon]
          Length = 631

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 196/541 (36%), Positives = 293/541 (54%), Gaps = 39/541 (7%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D    N LI  Y+ CGR   AR VFD      +VSWN+MI GY  +GE ++ LKLF +M 
Sbjct: 91  DTLTCNILINLYTKCGRNDCARLVFDIMHVRSIVSWNTMIAGYTHSGEDVQALKLFSRMH 150

Query: 70  QR---------------------------------------NDVSWNSILGGLVRFGSVD 90
           +                                        N     +IL    +   + 
Sbjct: 151 REGTHMSEFTLSSTICACAAKYAINECKQLHTIALKLALDSNSFVGTAILDVYAKCNMIK 210

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           DAC VF +MP+R+LV+W  L +G+ QNG  +EAL LFR  Q   +E     L ++LSACA
Sbjct: 211 DACWVFEKMPERTLVTWSSLFAGYVQNGLHEEALHLFRCAQREGVELTEFTLSAILSACA 270

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
            L     G  +++ I K     +  + A+L+D+YA+CG I+ A  +F     K+V  + +
Sbjct: 271 SLALKIEGIQLHAVILKCGFHGNFFVAASLVDVYARCGQIEKAYALFAYMEHKNVVIWNA 330

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I   + + HS EA  LFE M+  GI P+ ++Y++VLS CSH G VEKG +YF  +    
Sbjct: 331 MIASFSRHAHSWEAMILFEKMQQLGIFPNEVTYLSVLSVCSHAGLVEKGRHYFSLLMSDR 390

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
            ++P + HY+CMVD+LGR+G  +EA   +  MP +P   +WG+LLG+CR + N  + +  
Sbjct: 391 TVEPNVLHYSCMVDVLGRSGKTDEAWELLNKMPFEPTASMWGSLLGSCRNYNNIRLARIA 450

Query: 331 GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHE 390
              L + + ++ G ++LLSN+Y  +   EN    RK ++    K+  G S IE  G VH 
Sbjct: 451 AEQLFQLEPDNGGNHVLLSNVYAASGNWENVLMARKYLKDSGAKKEMGRSWIEAKGKVHV 510

Query: 391 FLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALA 450
           F+ G+R H +  +IY   EEI  +++ +         + D+  E+KE ++ +HSEKLAL+
Sbjct: 511 FVVGERKHPRITDIYNKLEEIYHEMRKFARRTSIECDLHDVHAEQKEELLKHHSEKLALS 570

Query: 451 FGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEY 510
           FGLI       I I KN+RIC DCHS MK+ + + +R + +RD   +HHF+DGSCSC ++
Sbjct: 571 FGLISLPSNIPIIIHKNLRICGDCHSFMKIAAHITERLVIVRDTNRFHHFKDGSCSCGDF 630

Query: 511 W 511
           W
Sbjct: 631 W 631



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 82/158 (51%), Gaps = 12/158 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +++K  F  + FV  SL+  Y+ CG++  A  +F   +  +VV WN+MI  + R+    E
Sbjct: 284 VILKCGFHGNFFVAASLVDVYARCGQIEKAYALFAYMEHKNVVIWNAMIASFSRHAHSWE 343

Query: 61  GLKLFDKMPQ----RNDVSWNSIL-----GGLVRFGSVDDACRVFNQMPKRSLVSWVVLI 111
            + LF+KM Q     N+V++ S+L      GLV  G    +  + ++  + +++ +  ++
Sbjct: 344 AMILFEKMQQLGIFPNEVTYLSVLSVCSHAGLVEKGRHYFSLLMSDRTVEPNVLHYSCMV 403

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
               ++G+  EA  L  +M     EP +++  SLL +C
Sbjct: 404 DVLGRSGKTDEAWELLNKM---PFEPTASMWGSLLGSC 438



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 75/178 (42%), Gaps = 14/178 (7%)

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
           L  CA+  +L  G   +       +  D++ C  LI++Y KCG  D A  VF     + +
Sbjct: 64  LQLCAKRKSLLVGKSCHGLAIHFGLVTDTLTCNILINLYTKCGRNDCARLVFDIMHVRSI 123

Query: 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHS 265
            ++ + I G   +G  ++A +LF  M  +G      +  + + AC+         Y  + 
Sbjct: 124 VSWNTMIAGYTHSGEDVQALKLFSRMHREGTHMSEFTLSSTICACA-------AKYAINE 176

Query: 266 MFDVHGI--KPELDHYA----CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
              +H I  K  LD  +     ++D+  +  ++++A      MP +   V W +L   
Sbjct: 177 CKQLHTIALKLALDSNSFVGTAILDVYAKCNMIKDACWVFEKMPERTL-VTWSSLFAG 233


>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 198/547 (36%), Positives = 300/547 (54%), Gaps = 40/547 (7%)

Query: 5   NSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKL 64
           +    D  +   L+  Y+ CG+V  AR +FD     +V  WN +I  Y R G     ++L
Sbjct: 91  SGLGPDTVLSTKLVDLYAACGQVGHARRLFDGMPKRNVFLWNVLIRAYAREGPREAAVRL 150

Query: 65  FDKMPQR--------------------------------NDVSWNS---ILGGLV----R 85
           +  M +                                 +   W     +  G+V    +
Sbjct: 151 YRGMVEHGVEPDNFTYPLVLKACAALLDLETGREVHQRVSGTRWGQDVFVCAGVVDMYAK 210

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
            G VDDA  VF+ +  R  V W  +I+ + QNGRP EALAL R+M +  + P  A LVS 
Sbjct: 211 CGCVDDARAVFDGIAVRDAVVWNSMIAAYGQNGRPMEALALCRDMAANGIGPTIATLVSA 270

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
           +SA A   AL  G  ++ +  ++   L   L  +L+DMYAK G + +A  +F     +++
Sbjct: 271 VSAAADAAALPRGRELHGFGWRRGFGLQDKLKTSLVDMYAKSGWVQVARVLFEQLMKREL 330

Query: 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKG-ISPDSISYIAVLSACSHLGWVEKGFYYFH 264
            ++ + I G  M+GH+ EA  LF  MK    ++PD+I+++ VLSAC+H G VE+   +F+
Sbjct: 331 VSWNAMICGYGMHGHADEALALFNKMKGDAQVTPDNITFVGVLSACNHGGMVEEAKEFFY 390

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
            M + + IKP + HY C++D+LG  G  EEA + I  M ++PD+ IWG LL  C++H+N 
Sbjct: 391 LMVNAYSIKPTVQHYTCVIDVLGHTGRFEEAYDLIKGMSIEPDSGIWGALLNGCKIHKNV 450

Query: 325 EMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIEL 384
           E+G+     LIE +    G Y+ LSNIY ++ K E A  VRK M  R +K+   CS IEL
Sbjct: 451 ELGELALQKLIELEPEDAGNYVHLSNIYAQSGKWEKAARVRKLMTNRGLKKILACSWIEL 510

Query: 385 DGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHS 444
            G  H FL GD SH ++ EIY   E +   + + GY  +   V  +++++EK  ++  HS
Sbjct: 511 KGKTHGFLVGDASHPRSDEIYGELERLEGLMSDAGYVPDIIPVFHNVDDDEKRNMVRSHS 570

Query: 445 EKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGS 504
           E+LA+AFGLI T PG+ + + KN+R+C DCH  +KL+S++ +R+I IRD   YHHF +G 
Sbjct: 571 ERLAIAFGLISTPPGTKLLVTKNLRVCEDCHVVIKLISQIVQREIIIRDVNRYHHFVNGE 630

Query: 505 CSCLEYW 511
           CSC +YW
Sbjct: 631 CSCKDYW 637



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 84/177 (47%), Gaps = 6/177 (3%)

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S+L +C   G+L  G  ++  +    +  D++L   L+D+YA CG +  A ++F     
Sbjct: 66  TSILQSCVASGSLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAACGQVGHARRLFDGMPK 125

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           ++V  +   I   A  G    A  L+  M   G+ PD+ +Y  VL AC+ L  +E G   
Sbjct: 126 RNVFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACAALLDLETGREV 185

Query: 263 FHSMFDVHGIKPELDHYAC--MVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
                 V G +   D + C  +VD+  + G +++A      + ++ D V+W +++ A
Sbjct: 186 HQR---VSGTRWGQDVFVCAGVVDMYAKCGCVDDARAVFDGIAVR-DAVVWNSMIAA 238



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 87/185 (47%), Gaps = 29/185 (15%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           +  F     +K SL+  Y+  G V+ AR +F++    ++VSWN+MI GY  +G   E L 
Sbjct: 292 RRGFGLQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHADEALA 351

Query: 64  LFDKMP-----QRNDVSWNSILGGLVRFGSVDDACRVFNQMP-----KRSLVSWVVLISG 113
           LF+KM        +++++  +L      G V++A   F  M      K ++  +  +I  
Sbjct: 352 LFNKMKGDAQVTPDNITFVGVLSACNHGGMVEEAKEFFYLMVNAYSIKPTVQHYTCVIDV 411

Query: 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC-----AQLGAL-----------DY 157
               GR +EA  L + M    +EP+S I  +LL+ C      +LG L           D 
Sbjct: 412 LGHTGRFEEAYDLIKGMS---IEPDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDA 468

Query: 158 GNWVY 162
           GN+V+
Sbjct: 469 GNYVH 473


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 188/530 (35%), Positives = 309/530 (58%), Gaps = 19/530 (3%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + +K++F   +   N+L+  YS CG +  A  VF++  + +VVSW SMI GY R+G    
Sbjct: 276 LAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDG 335

Query: 61  GLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWV----VLIS 112
            ++L  +M +     + V+  SIL    R GS+D+   V + +   ++ S +     L+ 
Sbjct: 336 AIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMD 395

Query: 113 GFAQNGRPKEALALFREMQSLD----------LEPNSAILVSLLSACAQLGALDYGNWVY 162
            + + G    A ++F  M   D          L+P+S  +  +L ACA L AL+ G  ++
Sbjct: 396 MYTKCGSMDGANSVFSTMVVKDIISWNTMIGELKPDSRTMACILPACASLSALERGKEIH 455

Query: 163 SYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSI 222
            YI +     D  +  AL+D+Y KCG + LA  +F     KD+ ++T  I G  M+G+  
Sbjct: 456 GYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMISGYGMHGYGN 515

Query: 223 EAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACM 282
           EA   F  M+  GI PD +S+I++L ACSH G +E+G+ +F+ M +   I+P+L+HYACM
Sbjct: 516 EAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACM 575

Query: 283 VDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD 342
           VDLL R G L +A  FI ++P+ PD  IWG LL  CR++ + E+ +++   + E +  + 
Sbjct: 576 VDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENT 635

Query: 343 GRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDR-SHEKT 401
           G Y+LL+NIY E  K E  + +R+ + K+ +++ PGCS IE+ G V+ F++G+  SH  +
Sbjct: 636 GYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHS 695

Query: 402 QEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSV 461
           ++I    +++ +K+K  GY  +T+  + + +E +KE  +  HSEKLA+AFGL+   P   
Sbjct: 696 KKIESLLKKMRRKMKEEGYFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLALPPRKT 755

Query: 462 IRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           +R+ KN+R+C DCH   K +SK  +R+I +RD   +HHF++G CSC  +W
Sbjct: 756 VRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKNGYCSCRGFW 805



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 164/316 (51%), Gaps = 13/316 (4%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++  N+ A D  +   L+  Y+ CG +++ R VFD  +  +V  WN M++ Y + G+  E
Sbjct: 124 IIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKE 183

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
            + LF  M ++            +     + A  +F+++  R ++SW  +ISG+  NG  
Sbjct: 184 SICLFKIMVEKG-----------IEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLT 232

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
           +  L ++++M  L ++ + A ++S+L  CA  G L  G  V+S   K   +        L
Sbjct: 233 ERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTL 292

Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
           +DMY+KCG +D A++VF   G+++V ++TS I G   +G S  A  L + M+ +G+  D 
Sbjct: 293 LDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDV 352

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
           ++  ++L AC+  G ++ G    H     + ++  L     ++D+  + G ++ A +  +
Sbjct: 353 VATTSILHACARSGSLDNG-KDVHDYIKANNMESNLFVCNALMDMYTKCGSMDGANSVFS 411

Query: 301 SMPMKPDNVIWGTLLG 316
           +M +K D + W T++G
Sbjct: 412 TMVVK-DIISWNTMIG 426



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 78/182 (42%), Gaps = 18/182 (9%)

Query: 102 RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161
           R +  +   I  F Q G  + A+ L    Q  +LE  +    S+L  CA   +L  G  V
Sbjct: 64  RQVTDYNAKILHFCQLGNLENAMELVCMCQKSELETKT--YSSVLQLCAGSKSLTDGKKV 121

Query: 162 YSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHS 221
           +S I+   + +D +L   L+ +YA CG +    +VF +   K+V  +   +   A  G  
Sbjct: 122 HSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDF 181

Query: 222 IEAFELFENMKSKGIS---PDS-------------ISYIAVLSACSHLGWVEKGFYYFHS 265
            E+  LF+ M  KGI    P+S             IS+ +++S     G  E+G   +  
Sbjct: 182 KESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQ 241

Query: 266 MF 267
           M 
Sbjct: 242 MM 243


>gi|356537109|ref|XP_003537073.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Glycine max]
          Length = 630

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 210/559 (37%), Positives = 316/559 (56%), Gaps = 57/559 (10%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V++     D + ++SLI  Y+ C     AR VFDE  +   + +N+MI+GY  N + L  
Sbjct: 80  VIRTGSQPDPYTRSSLINTYAKCSLHHHARKVFDEMPN-PTICYNAMISGYSFNSKPLHA 138

Query: 62  LKLFDKMPQRN------DVSWNSIL---------------------GGLVRFGSVDD--- 91
           + LF KM +        DV+ N++                      G  VRFG V D   
Sbjct: 139 VCLFRKMRREEEDGLDVDVNVNAVTLLSLVSGCSVATHLTIGVCLHGCCVRFGFVTDLAV 198

Query: 92  ----------------ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDL 135
                           A +VF++M  R L++W  +ISG+AQNG  +  L ++ EM+   +
Sbjct: 199 ANSLVTMYVKCGEVELARKVFDEMLVRDLITWNAMISGYAQNGHARCVLEVYSEMKLSGV 258

Query: 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ 195
             ++  L+ ++SACA LGA   G  V   I+++    +  L  AL++MYA+CG++  A +
Sbjct: 259 SADAVTLLGVMSACANLGAQGIGREVEREIERRGFGCNPFLRNALVNMYARCGNLTRARE 318

Query: 196 VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGW 255
           VF   G+K V ++T+ I G  ++GH   A ELF+ M    + PD   +++VLSACSH G 
Sbjct: 319 VFDRSGEKSVVSWTAIIGGYGIHGHGEVALELFDEMVESAVRPDKTVFVSVLSACSHAGL 378

Query: 256 VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
            ++G  YF  M   +G++P  +HY+C+VDLLGRAG LEEA N I SM +KPD  +WG LL
Sbjct: 379 TDRGLEYFKEMERKYGLQPGPEHYSCVVDLLGRAGRLEEAVNLIKSMKVKPDGAVWGALL 438

Query: 316 GACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKR 375
           GAC++H+NAE+ +     ++E +  + G Y+LLSNIY +    E    VR  MR+RK+++
Sbjct: 439 GACKIHKNAEIAELAFQHVVELEPTNIGYYVLLSNIYTDANNLEGVSRVRVMMRERKLRK 498

Query: 376 APGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEE---IVKKIKNYGYNVETRSVMFDIE 432
            PG S +E  G ++ F +GD SH +T++IY+  +E   +VK++       + RS      
Sbjct: 499 DPGYSYVEYKGKMNLFYSGDLSHPQTKQIYRMLDELESLVKEVHPPNEKCQGRS------ 552

Query: 433 EEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIR 492
            EE     G HSEKLA+AF L+ TK G+ I ++KN+R+C DCH  +KLVSK+  R+  +R
Sbjct: 553 -EELLIGTGVHSEKLAIAFALLNTKSGTEITVMKNLRVCVDCHLFIKLVSKIVNRQFIVR 611

Query: 493 DRKHYHHFEDGSCSCLEYW 511
           D   +HHF DG CSC +YW
Sbjct: 612 DATRFHHFRDGICSCKDYW 630



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 50/234 (21%), Positives = 99/234 (42%), Gaps = 12/234 (5%)

Query: 91  DACRVFNQMPKR--SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148
           D  R     P R     +W   +   ++  + +EAL L+R M      PN+     LL +
Sbjct: 4   DQLRESAAAPPRWNPTTAWNNQLRQLSKQRQYREALTLYRHMLRSSFFPNTFTFPFLLKS 63

Query: 149 CAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAY 208
           CA L      + +++++ +   + D    ++LI+ YAKC     A +VF    +  +  Y
Sbjct: 64  CAFLSLPLAASQLHAHVIRTGSQPDPYTRSSLINTYAKCSLHHHARKVFDEMPNPTI-CY 122

Query: 209 TSAIFGLAMNGHSIEAFELFENMKSK-------GISPDSISYIAVLSACSHLGWVEKGFY 261
            + I G + N   + A  LF  M+ +        ++ ++++ ++++S CS    +  G  
Sbjct: 123 NAMISGYSFNSKPLHAVCLFRKMRREEEDGLDVDVNVNAVTLLSLVSGCSVATHLTIGV- 181

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
             H      G   +L     +V +  + G +E A      M ++ D + W  ++
Sbjct: 182 CLHGCCVRFGFVTDLAVANSLVTMYVKCGEVELARKVFDEMLVR-DLITWNAMI 234


>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic [Vitis vinifera]
          Length = 658

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 203/549 (36%), Positives = 317/549 (57%), Gaps = 49/549 (8%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D F+   LI  YS    + +AR VFD++    +  WN++       G   E L L+ +M 
Sbjct: 112 DPFLATKLINMYSELDSIDNARKVFDKTRKRTIYVWNALFRALTLAGYGREVLDLYRRMN 171

Query: 70  Q----RNDVSWNSILGGLV---------------------------------------RF 86
           +     +  ++  +L   V                                       RF
Sbjct: 172 RIGVPSDRFTYTYVLKACVASEAFVSLLLNGREIHGHILRHGFEGHVHIMTTLLDMYARF 231

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM--QSLDLEPNSAILVS 144
           G V +A RVF+QMP +++VSW  +I+ +++NG+P EAL LFR+M  ++ DL PNS  +VS
Sbjct: 232 GCVLNASRVFDQMPVKNVVSWSAMIACYSKNGKPLEALELFRKMMLENQDLLPNSVTMVS 291

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSIL--CAALIDMYAKCGSIDLAMQVFHSYGD 202
           +L ACA L AL+ G  ++ YI ++   LDSIL   +AL+ +YA+CG+++L  +VF     
Sbjct: 292 VLQACAALAALEQGKLMHGYILRR--GLDSILPVVSALVTVYARCGNLELGHRVFERMEK 349

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           +DV ++ S I    ++G   +A ++F+ M  +G+SP  IS+++VL ACSH G VE+G   
Sbjct: 350 RDVVSWNSLISSYGIHGFGRKAIQIFKEMIDQGLSPSPISFVSVLGACSHAGLVEEGKVL 409

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F SM   H I P ++HYACMVDLLGRA  L+EA   I  M ++P   +WG+LLG+CR+H 
Sbjct: 410 FESMVRGHKIFPSVEHYACMVDLLGRANRLDEAAKIIDDMRIEPGPKVWGSLLGSCRIHC 469

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           N E+ +R  + L E +  + G Y+LL++IY E       + V+  +  R +++ PG S I
Sbjct: 470 NVELAERATSRLFELEPTNAGNYVLLADIYAEAKMWNEVKRVKMLLEARGLQKVPGRSCI 529

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E+   ++ F++ D  + + ++++    ++  ++K  GY  +T+ V++D++ EEKE ++  
Sbjct: 530 EIRRKIYSFMSVDEFNPQIEQLHALLLKLSMEMKEKGYVPDTKVVLYDLDPEEKERIVLG 589

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSEKLALAFGLI +K G  IRI KN+R+C DCHS  K +SK   R+I +RD   +H F+D
Sbjct: 590 HSEKLALAFGLINSKKGETIRITKNLRLCEDCHSVTKFISKFANREILVRDVNRFHLFQD 649

Query: 503 GSCSCLEYW 511
           G CSC +YW
Sbjct: 650 GVCSCGDYW 658



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 142/317 (44%), Gaps = 12/317 (3%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM----PQ 70
           N LIQ     G +  A  V  +  +    ++  +I    R   + +G+ L   +      
Sbjct: 51  NPLIQSLCKQGNLNQALQVLSQEPNPTQHTYELLILSCTRQNSLPQGIDLHRHLIHDGSD 110

Query: 71  RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM 130
           ++      ++       S+D+A +VF++  KR++  W  L       G  +E L L+R M
Sbjct: 111 QDPFLATKLINMYSELDSIDNARKVFDKTRKRTIYVWNALFRALTLAGYGREVLDLYRRM 170

Query: 131 QSLDLEPNSAILVSLLSAC----AQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAK 186
             + +  +      +L AC    A +  L  G  ++ +I +   +    +   L+DMYA+
Sbjct: 171 NRIGVPSDRFTYTYVLKACVASEAFVSLLLNGREIHGHILRHGFEGHVHIMTTLLDMYAR 230

Query: 187 CGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM--KSKGISPDSISYI 244
            G +  A +VF     K+V ++++ I   + NG  +EA ELF  M  +++ + P+S++ +
Sbjct: 231 FGCVLNASRVFDQMPVKNVVSWSAMIACYSKNGKPLEALELFRKMMLENQDLLPNSVTMV 290

Query: 245 AVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPM 304
           +VL AC+ L  +E+G    H      G+   L   + +V +  R G LE        M  
Sbjct: 291 SVLQACAALAALEQG-KLMHGYILRRGLDSILPVVSALVTVYARCGNLELGHRVFERME- 348

Query: 305 KPDNVIWGTLLGACRVH 321
           K D V W +L+ +  +H
Sbjct: 349 KRDVVSWNSLISSYGIH 365


>gi|356502497|ref|XP_003520055.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 852

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 194/547 (35%), Positives = 302/547 (55%), Gaps = 72/547 (13%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +V+N F  + +V+++L+  Y+ CG +  A+ V +  +D DVVSWNSMI G VR+G   E 
Sbjct: 341 IVRNGFGCNAYVQSALVDMYAKCGDLGSAKRVLENMEDDDVVSWNSMIVGCVRHGFEEEA 400

Query: 62  LKLFDKMPQRN-------------------------------------DVSWNSILGGLV 84
           + LF KM  RN                                      +  N+++    
Sbjct: 401 ILLFKKMHARNMKIDHYTFPSVLNCCIVGRIDGKSVHCLVIKTGFENYKLVSNALVDMYA 460

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
           +   ++ A  VF +M ++ ++SW  L++G+ QNG  +E+L  F +M+   + P+  I+ S
Sbjct: 461 KTEDLNCAYAVFEKMFEKDVISWTSLVTGYTQNGSHEESLKTFCDMRISGVSPDQFIVAS 520

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           +LSACA+L  L++G  V+S   K  ++    +  +L+ MYAKCG +D A  +F S   +D
Sbjct: 521 ILSACAELTLLEFGKQVHSDFIKLGLRSSLSVNNSLVTMYAKCGCLDDADAIFVSMHVRD 580

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           V  +T+ I G A NG   ++ +                                   YF 
Sbjct: 581 VITWTALIVGYARNGKGRDSLK-----------------------------------YFQ 605

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
            M  ++GI+P  +HYACM+DL GR G L+EA+  +  M +KPD  +W  LL ACRVH N 
Sbjct: 606 QMKKIYGIEPGPEHYACMIDLFGRLGKLDEAKEILNQMDVKPDATVWKALLAACRVHGNL 665

Query: 325 EMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIEL 384
           E+G+R    L E +  +   Y++LSN+Y+   K ++A ++R+ M+ + I + PGCS IE+
Sbjct: 666 ELGERAATNLFELEPMNAMPYVMLSNMYLAARKWDDAAKIRRLMKSKGITKEPGCSWIEM 725

Query: 385 DGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHS 444
           +  +H F++ DR H +  EIY   +EI+++IK  GY  +    + D++ E KE  + YHS
Sbjct: 726 NSRLHTFISEDRGHPREAEIYSKIDEIIRRIKEVGYVPDMNFSLHDMDREGKEAGLAYHS 785

Query: 445 EKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGS 504
           EKLA+AFGL+ + PG+ IRI KN+R+C DCHSAMK +S VF R I +RD   +HHF++G 
Sbjct: 786 EKLAVAFGLLASPPGAPIRIFKNLRVCGDCHSAMKYISGVFTRHIILRDSNCFHHFKEGE 845

Query: 505 CSCLEYW 511
           CSC +YW
Sbjct: 846 CSCEDYW 852



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 145/278 (52%), Gaps = 4/278 (1%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N ++NG  ++G+I +  +LFDKM QR++ +WN+++ G    G + +A  +FN    RS +
Sbjct: 119 NQLLNGLSKSGQIDDARELFDKMLQRDEYTWNTMVSGYANVGRLVEARELFNGFSSRSSI 178

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           +W  LISG+ + GR  EA  LF+ M+    +P+   L S+L  C+ LG +  G  ++ Y+
Sbjct: 179 TWSSLISGYCRFGRQAEAFDLFKRMRLEGQKPSQYTLGSILRGCSALGLIQKGEMIHGYV 238

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH--SYGDKDVSAYTSAIFGLAMNGHSIE 223
            K   + +  + A L+DMYAKC  I  A  +F   ++   +   +T+ + G A NG   +
Sbjct: 239 VKNGFESNVYVVAGLVDMYAKCRHISEAEILFKGLAFNKGNHVLWTAMVTGYAQNGDDHK 298

Query: 224 AFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMV 283
           A E F  M ++G+  +  ++ ++L+ACS +     G    H     +G        + +V
Sbjct: 299 AIEFFRYMHTEGVESNQFTFPSILTACSSVSAHCFG-EQVHGCIVRNGFGCNAYVQSALV 357

Query: 284 DLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           D+  + G L  A+  + +M    D V W +++  C  H
Sbjct: 358 DMYAKCGDLGSAKRVLENME-DDDVVSWNSMIVGCVRH 394



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 98/355 (27%), Positives = 169/355 (47%), Gaps = 45/355 (12%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFD--ESDDLDVVSWNSMINGYVRNGEIL 59
           VVKN F  +V+V   L+  Y+ C  + +A  +F     +  + V W +M+ GY +NG+  
Sbjct: 238 VVKNGFESNVYVVAGLVDMYAKCRHISEAEILFKGLAFNKGNHVLWTAMVTGYAQNGDDH 297

Query: 60  EGLKLFDKMP----QRNDVSWNSIL----------------GGLVR-------------- 85
           + ++ F  M     + N  ++ SIL                G +VR              
Sbjct: 298 KAIEFFRYMHTEGVESNQFTFPSILTACSSVSAHCFGEQVHGCIVRNGFGCNAYVQSALV 357

Query: 86  -----FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
                 G +  A RV   M    +VSW  +I G  ++G  +EA+ LF++M + +++ +  
Sbjct: 358 DMYAKCGDLGSAKRVLENMEDDDVVSWNSMIVGCVRHGFEEEAILLFKKMHARNMKIDHY 417

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
              S+L+ C  +G +D G  V+  + K   +   ++  AL+DMYAK   ++ A  VF   
Sbjct: 418 TFPSVLNCCI-VGRID-GKSVHCLVIKTGFENYKLVSNALVDMYAKTEDLNCAYAVFEKM 475

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
            +KDV ++TS + G   NG   E+ + F +M+  G+SPD     ++LSAC+ L  +E G 
Sbjct: 476 FEKDVISWTSLVTGYTQNGSHEESLKTFCDMRISGVSPDQFIVASILSACAELTLLEFG- 534

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
              HS F   G++  L     +V +  + G L++A+    SM ++ D + W  L+
Sbjct: 535 KQVHSDFIKLGLRSSLSVNNSLVTMYAKCGCLDDADAIFVSMHVR-DVITWTALI 588



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 94/399 (23%), Positives = 172/399 (43%), Gaps = 72/399 (18%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM- 68
           D +  N+++  Y+  GR+ +AR +F+       ++W+S+I+GY R G   E   LF +M 
Sbjct: 145 DEYTWNTMVSGYANVGRLVEARELFNGFSSRSSITWSSLISGYCRFGRQAEAFDLFKRMR 204

Query: 69  ---PQRNDVSWNSILGGLVRFGSVDDA----------------------------CRVFN 97
               + +  +  SIL G    G +                               CR  +
Sbjct: 205 LEGQKPSQYTLGSILRGCSALGLIQKGEMIHGYVVKNGFESNVYVVAGLVDMYAKCRHIS 264

Query: 98  Q---------MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148
           +           K + V W  +++G+AQNG   +A+  FR M +  +E N     S+L+A
Sbjct: 265 EAEILFKGLAFNKGNHVLWTAMVTGYAQNGDDHKAIEFFRYMHTEGVESNQFTFPSILTA 324

Query: 149 CAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAY 208
           C+ + A  +G  V+  I +     ++ + +AL+DMYAKCG +  A +V  +  D DV ++
Sbjct: 325 CSSVSAHCFGEQVHGCIVRNGFGCNAYVQSALVDMYAKCGDLGSAKRVLENMEDDDVVSW 384

Query: 209 TSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC---------SHLGWVEKG 259
            S I G   +G   EA  LF+ M ++ +  D  ++ +VL+ C          H   ++ G
Sbjct: 385 NSMIVGCVRHGFEEEAILLFKKMHARNMKIDHYTFPSVLNCCIVGRIDGKSVHCLVIKTG 444

Query: 260 FYYF----HSMFDVHGIKPELD---------------HYACMVDLLGRAGLLEEAENFIA 300
           F  +    +++ D++    +L+                +  +V    + G  EE+     
Sbjct: 445 FENYKLVSNALVDMYAKTEDLNCAYAVFEKMFEKDVISWTSLVTGYTQNGSHEESLKTFC 504

Query: 301 SMPM---KPDNVIWGTLLGACRVHRNAEMGQRIGNMLIE 336
            M +    PD  I  ++L AC      E G+++ +  I+
Sbjct: 505 DMRISGVSPDQFIVASILSACAELTLLEFGKQVHSDFIK 543



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 105/233 (45%), Gaps = 43/233 (18%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V+K  F     V N+L+  Y+    +  A  VF++  + DV+SW S++ GY +NG   E
Sbjct: 439 LVIKTGFENYKLVSNALVDMYAKTEDLNCAYAVFEKMFEKDVISWTSLVTGYTQNGSHEE 498

Query: 61  GLKL--------------------------------------FDKMPQRNDVSW-NSILG 81
            LK                                       F K+  R+ +S  NS++ 
Sbjct: 499 SLKTFCDMRISGVSPDQFIVASILSACAELTLLEFGKQVHSDFIKLGLRSSLSVNNSLVT 558

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL-DLEPNSA 140
              + G +DDA  +F  M  R +++W  LI G+A+NG+ +++L  F++M+ +  +EP   
Sbjct: 559 MYAKCGCLDDADAIFVSMHVRDVITWTALIVGYARNGKGRDSLKYFQQMKKIYGIEPGPE 618

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLA 193
               ++    +LG LD    + + +    +K D+ +  AL+      G+++L 
Sbjct: 619 HYACMIDLFGRLGKLDEAKEILNQMD---VKPDATVWKALLAACRVHGNLELG 668


>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
 gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
          Length = 933

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 177/423 (41%), Positives = 269/423 (63%), Gaps = 1/423 (0%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V +N F   VFV+ SL+ FYS  GR+ ++  VFDE  + DV +W +M++G VR G++   
Sbjct: 106 VWRNGFDSHVFVQTSLVDFYSSMGRIEESVRVFDEMPERDVFAWTTMVSGLVRVGDMSSA 165

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
            +LFD MP RN  +WN+++ G  R   VD A  +FNQMP R ++SW  +I+ ++QN R +
Sbjct: 166 GRLFDMMPDRNLATWNTLIDGYARLREVDVAELLFNQMPARDIISWTTMINCYSQNKRFR 225

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
           EAL +F EM    + P+   + +++SACA LGALD G  ++ YI +    LD  + +ALI
Sbjct: 226 EALGVFNEMAKHGISPDEVTMATVISACAHLGALDLGKEIHYYIMQHGFNLDVYIGSALI 285

Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
           DMYAKCGS+D ++ +F    +K++  + S I GLA++G++ EA  +F+ M+ + I P+ +
Sbjct: 286 DMYAKCGSLDRSLLMFFKLREKNLFCWNSVIEGLAVHGYAEEALAMFDKMEREKIKPNGV 345

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
           ++++VLSAC+H G +E+G   F SM   H I P ++HY CMVDLL +AGLLEEA   I +
Sbjct: 346 TFVSVLSACNHAGLIEEGRKRFASMTRDHSIPPGVEHYGCMVDLLSKAGLLEEALQLIRT 405

Query: 302 MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361
           M ++P+ VIWG LL  C++HRN E+ Q   N L+  +  + G Y LL N+  E  +   A
Sbjct: 406 MKLEPNAVIWGALLSGCKLHRNLEIAQVAANKLMVLEPGNSGYYTLLVNMNAEVNRWGEA 465

Query: 362 EEVRKTMRKRKI-KRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGY 420
            ++R TM+++ + KR PG S IE++  VH+F A D+SH  + EIY    E+  ++K  GY
Sbjct: 466 AKIRLTMKEQGVEKRCPGSSWIEMESQVHQFAASDKSHAASDEIYSLLAELDGQMKLAGY 525

Query: 421 NVE 423
             E
Sbjct: 526 VPE 528



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/271 (23%), Positives = 122/271 (45%), Gaps = 16/271 (5%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136
           N  +  L  F  +D A   + QM   ++  +  +I GF Q+ +P +AL L+ +M   ++ 
Sbjct: 18  NQFISALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQPVQALELYVQMLRANVS 77

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
           P S    SL+ AC  +  L +   V+ ++ +        +  +L+D Y+  G I+ +++V
Sbjct: 78  PTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTSLVDFYSSMGRIEESVRV 137

Query: 197 FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWV 256
           F    ++DV A+T+ + GL   G    A  LF+ M  + ++    ++  ++   + L  V
Sbjct: 138 FDEMPERDVFAWTTMVSGLVRVGDMSSAGRLFDMMPDRNLA----TWNTLIDGYARLREV 193

Query: 257 EKGFYYFHSMFDVHGIKPELD--HYACMVDLLGRAGLLEEAE---NFIASMPMKPDNVIW 311
           +     F+ M       P  D   +  M++   +     EA    N +A   + PD V  
Sbjct: 194 DVAELLFNQM-------PARDIISWTTMINCYSQNKRFREALGVFNEMAKHGISPDEVTM 246

Query: 312 GTLLGACRVHRNAEMGQRIGNMLIESDQNHD 342
            T++ AC      ++G+ I   +++   N D
Sbjct: 247 ATVISACAHLGALDLGKEIHYYIMQHGFNLD 277



 Score = 43.1 bits (100), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 76/184 (41%), Gaps = 12/184 (6%)

Query: 161 VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGH 220
           +Y+ + K     D  L    I   +    +D A+  +      +V  Y + I G   +  
Sbjct: 1   MYAVMVKTNTNQDCYLMNQFISALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQ 60

Query: 221 SIEAFELFENMKSKGISPDSISYIAVLSAC---SHLGWVEKGFYYFHSMFDVHGIKPELD 277
            ++A EL+  M    +SP S ++ +++ AC   S L + E      H     +G    + 
Sbjct: 61  PVQALELYVQMLRANVSPTSYTFPSLIKACGLVSQLRFAEA----VHGHVWRNGFDSHVF 116

Query: 278 HYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL-GACRVHRNAEMGQRIGNMLIE 336
               +VD     G +EE+      MP + D   W T++ G  RV   +  G R+ +M+  
Sbjct: 117 VQTSLVDFYSSMGRIEESVRVFDEMPER-DVFAWTTMVSGLVRVGDMSSAG-RLFDMM-- 172

Query: 337 SDQN 340
            D+N
Sbjct: 173 PDRN 176


>gi|297823173|ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325308|gb|EFH55728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 583

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 179/441 (40%), Positives = 283/441 (64%), Gaps = 9/441 (2%)

Query: 79  ILGGLVRF----GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD 134
           +   LV F    G ++ A +VF++MP++S+V+W  L+SGF QNG  ++A+ +F +M+   
Sbjct: 144 VQAALVTFYSKCGDMEAARQVFDRMPEKSVVAWNSLVSGFEQNGLAEDAIRVFYQMRESG 203

Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
            EP+SA  VSLLSACAQ GA+  G+WV+ YI  + + ++  L  ALI++Y++CG +  A 
Sbjct: 204 FEPDSATFVSLLSACAQTGAISLGSWVHQYIVSEGLDVNVKLGTALINLYSRCGDVGKAR 263

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK-GISPDSISYIAVLSACSHL 253
           +VF    + +V+A+T+ I     +G+  +A +LF  M+   G  P++++++AVLSAC+H 
Sbjct: 264 EVFDKMKETNVAAWTAMISAYGTHGYGKQAVDLFNKMEDDCGSIPNNVTFVAVLSACAHA 323

Query: 254 GWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNV---I 310
           G VE G   +  M + + + P ++H+ C+VD+LGRAG L+EA  FI  +    +     +
Sbjct: 324 GLVEDGRSVYKRMTESYRLIPGVEHHVCIVDMLGRAGFLDEAYRFIQQLDATGNATAPAL 383

Query: 311 WGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370
           W  +LGAC++HRN ++G  I   LI  +  + G +++LSNIY  + K +    +R  M +
Sbjct: 384 WTAMLGACKMHRNYDLGVEIAKRLIALEPENPGHHVMLSNIYALSGKTDEVSHIRDRMMR 443

Query: 371 RKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFD 430
             +++  G S+IE++   + F  GD SH++T EIY++ E ++ + K  GY   +  VM  
Sbjct: 444 NNLRKQVGYSIIEVENKTYLFSMGDESHQETGEIYRYLETLISRCKEIGYAPVSEEVMHQ 503

Query: 431 IEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKIS 490
           +EEEEKE  + YHSEKLA+AFGL+ T   S I +VKN+RIC DCHSA K +S V  R+I 
Sbjct: 504 VEEEEKEFALRYHSEKLAVAFGLLKT-VDSAITVVKNLRICEDCHSAFKYISIVSNRQII 562

Query: 491 IRDRKHYHHFEDGSCSCLEYW 511
           +RD+  +HHF++GSCSCL+YW
Sbjct: 563 VRDKLRFHHFQNGSCSCLDYW 583



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 101/203 (49%), Gaps = 4/203 (1%)

Query: 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
           P   +A +R M S ++ P++    S++ +CA L AL  G  V+ +       LD+ + AA
Sbjct: 88  PLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALKIGKGVHCHAVVSGFGLDTYVQAA 147

Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
           L+  Y+KCG ++ A QVF    +K V A+ S + G   NG + +A  +F  M+  G  PD
Sbjct: 148 LVTFYSKCGDMEAARQVFDRMPEKSVVAWNSLVSGFEQNGLAEDAIRVFYQMRESGFEPD 207

Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI 299
           S +++++LSAC+  G +  G  + H      G+   +     +++L  R G + +A    
Sbjct: 208 SATFVSLLSACAQTGAISLG-SWVHQYIVSEGLDVNVKLGTALINLYSRCGDVGKAREVF 266

Query: 300 ASMPMKPDNV-IWGTLLGACRVH 321
               MK  NV  W  ++ A   H
Sbjct: 267 DK--MKETNVAAWTAMISAYGTH 287



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 121/258 (46%), Gaps = 48/258 (18%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           V + F  D +V+ +L+ FYS CG +  AR VFD   +  VV+WNS+++G+ +NG   + +
Sbjct: 134 VVSGFGLDTYVQAALVTFYSKCGDMEAARQVFDRMPEKSVVAWNSLVSGFEQNGLAEDAI 193

Query: 63  KLFDKMPQR----NDVSWNSILGGLV---------------------------------- 84
           ++F +M +     +  ++ S+L                                      
Sbjct: 194 RVFYQMRESGFEPDSATFVSLLSACAQTGAISLGSWVHQYIVSEGLDVNVKLGTALINLY 253

Query: 85  -RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQ-SLDLEPNSAIL 142
            R G V  A  VF++M + ++ +W  +IS +  +G  K+A+ LF +M+      PN+   
Sbjct: 254 SRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGKQAVDLFNKMEDDCGSIPNNVTF 313

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI---LCAALIDMYAKCGSIDLA---MQV 196
           V++LSACA  G ++ G  VY  + +    +  +   +C  ++DM  + G +D A   +Q 
Sbjct: 314 VAVLSACAHAGLVEDGRSVYKRMTESYRLIPGVEHHVC--IVDMLGRAGFLDEAYRFIQQ 371

Query: 197 FHSYGDKDVSAYTSAIFG 214
             + G+    A  +A+ G
Sbjct: 372 LDATGNATAPALWTAMLG 389



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 80/170 (47%), Gaps = 16/170 (9%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +V      +V +  +LI  YS CG V  AR VFD+  + +V +W +MI+ Y  +G   + 
Sbjct: 234 IVSEGLDVNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGKQA 293

Query: 62  LKLFDKMPQ-----RNDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLI 111
           + LF+KM        N+V++ ++L      G V+D   V+ +M +       +   V ++
Sbjct: 294 VDLFNKMEDDCGSIPNNVTFVAVLSACAHAGLVEDGRSVYKRMTESYRLIPGVEHHVCIV 353

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNS---AILVSLLSACAQLGALDYG 158
               + G   EA   +R +Q LD   N+   A+  ++L AC      D G
Sbjct: 354 DMLGRAGFLDEA---YRFIQQLDATGNATAPALWTAMLGACKMHRNYDLG 400


>gi|297602077|ref|NP_001052059.2| Os04g0118700 [Oryza sativa Japonica Group]
 gi|222628272|gb|EEE60404.1| hypothetical protein OsJ_13579 [Oryza sativa Japonica Group]
 gi|255675134|dbj|BAF13973.2| Os04g0118700 [Oryza sativa Japonica Group]
          Length = 856

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 198/554 (35%), Positives = 298/554 (53%), Gaps = 47/554 (8%)

Query: 5   NSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDL--DVVSWNSMINGYVRNGEILEGL 62
           +  A + FV ++L+  Y+   +V  AR VFD   D    +  WN+MI GY + G   E L
Sbjct: 303 DELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEAL 362

Query: 63  KLFDKMPQR----------------------------------------NDVSWNSILGG 82
           +LF +M                                           N    N+++  
Sbjct: 363 RLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDM 422

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD---LEPNS 139
             R G  D A R+F  +    +VSW  LI+G    G   +A  L REMQ L+   + PN+
Sbjct: 423 YARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNA 482

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
             L++LL  CA L A   G  ++ Y  +  +  D  + +AL+DMYAKCG + L+  VF  
Sbjct: 483 ITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDR 542

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG-ISPDSISYIAVLSACSHLGWVEK 258
              ++   +   I    M+G   EA  LF+ M + G   P+ ++++A L+ACSH G V++
Sbjct: 543 LPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDR 602

Query: 259 GFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNV-IWGTLLGA 317
           G   FH+M   HG++P  D  AC+VD+LGRAG L+EA   + SM      V  W T+LGA
Sbjct: 603 GLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMETGEQQVSAWSTMLGA 662

Query: 318 CRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAP 377
           CR+HRN  +G+  G  L+E +      Y+LL NIY    +   A EVR  MR+R + + P
Sbjct: 663 CRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEP 722

Query: 378 GCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKE 437
           GCS IE+DG +H F+AG+ +H  ++E++   E +  ++   GY  +T  V+ D+++ +K 
Sbjct: 723 GCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDMDDGDKA 782

Query: 438 TVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHY 497
            V+  HSEKLA+AFGL+   PG+ IR+ KN+R+C+DCH A K +SK+  R+I +RD + +
Sbjct: 783 AVLRCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRF 842

Query: 498 HHFEDGSCSCLEYW 511
           HHF +G CSC +YW
Sbjct: 843 HHFRNGQCSCGDYW 856



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 154/362 (42%), Gaps = 55/362 (15%)

Query: 13  VKNSLIQFYSVCGRVRDARWVFDESDDL--DVVSWNSMINGY------------------ 52
           V N+L+  Y+ CGR+  A  VF    D   D VS+NS+I+                    
Sbjct: 98  VANALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLA 157

Query: 53  ----VRNGEILEGLKLFDKMPQ----------------RNDV-------SWNSILGGLVR 85
               + +  ++  L+    +P                 +N +       ++N++L    R
Sbjct: 158 GGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYAR 217

Query: 86  FGSVDDACRVF-NQMPKRS-LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
            G V DA R+F    P R  +V+W  ++S   Q+G   EA+    +M +L + P+     
Sbjct: 218 LGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFA 277

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKC-IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           S L AC++L  LD G  +++Y+ K   +  +S + +AL+DMYA    +  A QVF    D
Sbjct: 278 SALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPD 337

Query: 203 --KDVSAYTSAIFGLAMNGHSIEAFELFENMKSK-GISPDSISYIAVLSACSHLGWVEKG 259
             K +  + + I G A  G   EA  LF  M+++ G  P   +  +VL AC+       G
Sbjct: 338 SGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACAR-SEAFAG 396

Query: 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACR 319
               H      G+         ++D+  R G  + A    A + + PD V W TL+  C 
Sbjct: 397 KEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDL-PDVVSWNTLITGCV 455

Query: 320 VH 321
           V 
Sbjct: 456 VQ 457



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 119/255 (46%), Gaps = 46/255 (18%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VVK   A + FV+N+L+  Y+  G+   AR +F   D  DVVSWN++I G V  G + + 
Sbjct: 404 VVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADA 463

Query: 62  LKLFDKMPQ-------RNDVSWNSILGGL------------------------VRFGS-- 88
            +L  +M Q        N ++  ++L G                         V  GS  
Sbjct: 464 FQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSAL 523

Query: 89  VDDACR---------VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQ-SLDLEPN 138
           VD   +         VF+++P+R+ ++W VLI  +  +G   EA  LF  M  S +  PN
Sbjct: 524 VDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPN 583

Query: 139 SAILVSLLSACAQLGALDYGNWVYSYIQK-KCIKLDSILCAALIDMYAKCGSID--LAMQ 195
               ++ L+AC+  G +D G  ++  +++   ++    + A ++D+  + G +D   AM 
Sbjct: 584 EVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMV 643

Query: 196 VFHSYGDKDVSAYTS 210
                G++ VSA+++
Sbjct: 644 TSMETGEQQVSAWST 658


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 192/549 (34%), Positives = 304/549 (55%), Gaps = 39/549 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           + K  F  D  V N LI  Y     V D   VF+   + D+VSWN++++G+  +     G
Sbjct: 178 ICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRG 237

Query: 62  LKLFDKM------------------------PQ---------------RNDVSWNSILGG 82
            ++F +M                        P+                +D    +++  
Sbjct: 238 PRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDM 297

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             +   ++DA   F+++  R + SW V+ISG+AQ  + ++A+  FR+MQ   ++PN   L
Sbjct: 298 YAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTL 357

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S LS C+ +  L+ G  +++   K     D  + +AL+D+Y KCG ++ A  +F     
Sbjct: 358 ASCLSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLIS 417

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           +D+ ++ + I G + +G   +A E F  M S+GI PD  ++I VLSACS +G VE+G   
Sbjct: 418 RDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKR 477

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F SM  ++GI P ++HYACMVD+LGRAG   E + FI  M + P ++IW T+LGAC++H 
Sbjct: 478 FDSMSKIYGINPSIEHYACMVDILGRAGKFNEVKIFIEEMNLTPYSLIWETVLGACKLHG 537

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           N + G++    L E +   D  YILLSNI+    + ++   +R  M  R IK+ PGCS +
Sbjct: 538 NVDFGEKAAKKLFEMEPMMDSSYILLSNIFASKGRWDDVRNIRALMTSRGIKKEPGCSWV 597

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E+DG VH FL+ D SH K +EIY   +++ + + + GY  +T  V+ ++  +EK   + Y
Sbjct: 598 EVDGQVHVFLSQDGSHPKIREIYAKLDKLGQSLMSIGYVPKTEVVLHNVSNKEKMEHLYY 657

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSE+LAL+F L+ T     IRI KN+RIC DCH  MKL+S +  ++I +RD + +HHF+ 
Sbjct: 658 HSERLALSFALLSTNAVKPIRIFKNLRICEDCHDFMKLISDITNQEIVVRDIRRFHHFKR 717

Query: 503 GSCSCLEYW 511
           G+CSC + W
Sbjct: 718 GTCSCQDRW 726



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 100/380 (26%), Positives = 170/380 (44%), Gaps = 53/380 (13%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + +++    D F+  SL+  YS CG V DA  VF +  + DVV+W++MI G  + G   E
Sbjct: 76  LALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMITGLDQQGHGQE 135

Query: 61  GLKLFDKMPQR----NDVSWNSILG-----GLVRFGS----------------------- 88
             +LF  M ++    N  + +S++      G +R+G                        
Sbjct: 136 AAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIM 195

Query: 89  -------VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
                  V+D  +VF  M    LVSW  L+SGF  +        +F +M     +PN   
Sbjct: 196 MYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFT 255

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
            +S+L +C+ L   ++G  V+++I K     D  +  AL+DMYAK   ++ A   F    
Sbjct: 256 FISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLV 315

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
           ++D+ ++T  I G A    + +A + F  M+ +GI P+  +  + LS CSH+  +E G  
Sbjct: 316 NRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENG-- 373

Query: 262 YFHSMFDVHGIKPELDHY------ACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
                  +H +  +  H+      + +VDL G+ G +E AE     + +  D V W T++
Sbjct: 374 -----RQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGL-ISRDIVSWNTII 427

Query: 316 GACRVHRNAEMGQRIGNMLI 335
                H   E       M++
Sbjct: 428 SGYSQHGQGEKALEAFRMML 447



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 128/244 (52%), Gaps = 3/244 (1%)

Query: 94  RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153
           R+F  MP+++ VSW  L++G+AQ G  K+ L LF +M+  + + +   L ++L  CA  G
Sbjct: 6   RLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCANTG 65

Query: 154 ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIF 213
           +L  G  +++   +   ++D  L  +L+DMY+KCG++  A++VF    + DV A+++ I 
Sbjct: 66  SLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMIT 125

Query: 214 GLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIK 273
           GL   GH  EA ELF  M+ KG  P+  +  +++S  +++G +  G    H     +G +
Sbjct: 126 GLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYG-QSIHGCICKYGFE 184

Query: 274 PELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIG-N 332
            +      ++ +  ++  +E+      +M   PD V W  LL      +    G RI   
Sbjct: 185 SDNLVSNPLIMMYMKSRCVEDGNKVFEAMT-NPDLVSWNALLSGFYDSQTCGRGPRIFYQ 243

Query: 333 MLIE 336
           ML+E
Sbjct: 244 MLLE 247



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 130/296 (43%), Gaps = 48/296 (16%)

Query: 43  VSWNSMINGYVRNGEILEGLKLFDKMPQ-------------------------------- 70
           VSWN+++NGY + G+  + LKLF KM +                                
Sbjct: 17  VSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCANTGSLREGKVLHAL 76

Query: 71  --RNDVSWNSILG-GLV----RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEA 123
             R+    +  LG  LV    + G+V DA +VF ++    +V+W  +I+G  Q G  +EA
Sbjct: 77  ALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMITGLDQQGHGQEA 136

Query: 124 LALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDM 183
             LF  M+     PN   L SL+S    +G L YG  ++  I K   + D+++   LI M
Sbjct: 137 AELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMM 196

Query: 184 YAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISY 243
           Y K   ++   +VF +  + D+ ++ + + G   +        +F  M  +G  P+  ++
Sbjct: 197 YMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTF 256

Query: 244 IAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDH----YACMVDLLGRAGLLEEA 295
           I+VL +CS L   E     F      H IK   D        +VD+  +A  LE+A
Sbjct: 257 ISVLRSCSSLLDPE-----FGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDA 307



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 12/167 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + VK     D+FV ++L+  Y  CG +  A  +F      D+VSWN++I+GY ++G+  +
Sbjct: 379 VAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEK 438

Query: 61  GLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPK-----RSLVSWVVLI 111
            L+ F  M       ++ ++  +L      G V++  + F+ M K      S+  +  ++
Sbjct: 439 ALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMV 498

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
               + G+  E      EM   +L P S I  ++L AC   G +D+G
Sbjct: 499 DILGRAGKFNEVKIFIEEM---NLTPYSLIWETVLGACKLHGNVDFG 542


>gi|302767396|ref|XP_002967118.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
 gi|300165109|gb|EFJ31717.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
          Length = 903

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 199/549 (36%), Positives = 308/549 (56%), Gaps = 49/549 (8%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM- 68
           D+ + N+L+  Y+ CG   +AR +F E    + VSWN+MI G  + G++   L+LF +M 
Sbjct: 357 DIVLGNALLDMYTRCGSPEEARHLF-EGIPGNAVSWNTMIAGSSQKGQMKRALELFQRMQ 415

Query: 69  -----PQRND---------------------------------VSWNSILGGLVRF---- 86
                P R                                    S  +I   +V+     
Sbjct: 416 LEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASC 475

Query: 87  GSVDDACRVFNQMP---KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
           G++D+A   F +     +  +VSW  +IS  +Q+G  K AL  FR M    + PN    V
Sbjct: 476 GAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCV 535

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG-D 202
           ++L ACA   AL  G  V+ +++   ++ +  +  AL  MY +CGS++ A ++F     +
Sbjct: 536 AVLDACAGAAALTEGVIVHDHLRHSGMESNVFVATALASMYGRCGSLESAREIFEKVAVE 595

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           +DV  + + I   + NG + EA +LF  M+ +G  PD  S+++VLSACSH G  ++G+  
Sbjct: 596 RDVVIFNAMIAAYSQNGLAGEALKLFWRMQQEGSRPDEQSFVSVLSACSHGGLADEGWEI 655

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F SM   +GI P  DHYAC VD+LGRAG L +AE  I  M +KP  ++W TLLGACR +R
Sbjct: 656 FRSMRQSYGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDVKPTVLVWKTLLGACRKYR 715

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           + + G+   +M+ E D   +  Y++LSNI     K + A EVR  M  R +++  G S I
Sbjct: 716 DVDRGRLANSMVRELDPGDESAYVVLSNILAGAGKWDEAAEVRTEMESRGLRKQAGKSWI 775

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E+   VHEF+AGDRSH +++EIY+  E +  +I+  GY  +TR V+  ++E EKE ++  
Sbjct: 776 EIKSRVHEFVAGDRSHPRSEEIYRELERLHAEIREIGYVPDTRLVLRKVDEAEKERLLCQ 835

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSE+LA+A G++ +   +V R++KN+R+C DCH+A K +SK+  ++I +RD   +HHF D
Sbjct: 836 HSERLAIALGVMSSSTDTV-RVMKNLRVCEDCHNATKFISKIVNKEIVVRDTHRFHHFVD 894

Query: 503 GSCSCLEYW 511
           GSCSC +YW
Sbjct: 895 GSCSCGDYW 903



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 98/360 (27%), Positives = 165/360 (45%), Gaps = 45/360 (12%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V ++     + V  +L   Y+  G +  A+ VFD + + DVVSWN+M+  Y ++G + E
Sbjct: 250 IVRESGLEQTLVVSTALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSE 309

Query: 61  GLKLFDKM------PQ------------------------------RNDVSWNSILGGLV 84
              LF +M      P                               R+ V  N++L    
Sbjct: 310 AALLFARMLHEGIPPSKVTLVNASTGCSSLRFGRMIHACALEKGLDRDIVLGNALLDMYT 369

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
           R GS ++A  +F  +P  + VSW  +I+G +Q G+ K AL LF+ MQ   + P  A  ++
Sbjct: 370 RCGSPEEARHLFEGIPGNA-VSWNTMIAGSSQKGQMKRALELFQRMQLEGMAPVRATYLN 428

Query: 145 LLSACA----QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH-- 198
           LL A A    +  A+  G  ++S I       +  +  A++ MYA CG+ID A   F   
Sbjct: 429 LLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRG 488

Query: 199 SYGDK-DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVE 257
           +  D+ DV ++ + I  L+ +GH   A   F  M   G++P+ I+ +AVL AC+    + 
Sbjct: 489 AMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALT 548

Query: 258 KGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
           +G    H      G++  +     +  + GR G LE A      + ++ D VI+  ++ A
Sbjct: 549 EGV-IVHDHLRHSGMESNVFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAA 607



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 100/412 (24%), Positives = 171/412 (41%), Gaps = 63/412 (15%)

Query: 6   SFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLF 65
           S   +  + N L++ Y  C  + D   VF   +  D  SW ++I  Y  +G+    + +F
Sbjct: 57  SLGLEEELGNHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITAYTEHGQAKRAIWMF 116

Query: 66  DKMPQR----NDVSWNSILGGLVRFGS--------------------------------- 88
            +M Q     + V++ ++L    R G                                  
Sbjct: 117 HRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLEGKSVLANLLLHIYGSC 176

Query: 89  --VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
             V  A  +F +M +R LVSW   I+  AQ+G    AL LF+ MQ   + P    LV  L
Sbjct: 177 GCVASAMLLFERM-ERDLVSWNAAIAANAQSGDLDMALELFQRMQLEGVRPARITLVITL 235

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
           S CA++        ++S +++  ++   ++  AL   YA+ G +D A +VF    ++DV 
Sbjct: 236 SVCAKI---RQARAIHSIVRESGLEQTLVVSTALASAYARLGHLDQAKEVFDRAAERDVV 292

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
           ++ + +   A +GH  EA  LF  M  +GI P  ++ +   + CS L    +     H+ 
Sbjct: 293 SWNAMLGAYAQHGHMSEAALLFARMLHEGIPPSKVTLVNASTGCSSL----RFGRMIHAC 348

Query: 267 FDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC----RVHR 322
               G+  ++     ++D+  R G  EEA +    +P   + V W T++       ++ R
Sbjct: 349 ALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFEGIP--GNAVSWNTMIAGSSQKGQMKR 406

Query: 323 NAEMGQRIGNMLIESDQNHDGRYI-LLSNIYVETLKGENAEEVRKTMRKRKI 373
             E+ QR   M +E        Y+ LL  +        N EE R     RK+
Sbjct: 407 ALELFQR---MQLEGMAPVRATYLNLLEAV------ASNPEEARAMAEGRKL 449



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 90/209 (43%), Gaps = 43/209 (20%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDES---DDLDVVSWNSMINGYVRNGEI 58
           +V   +A +  +  ++++ Y+ CG + +A   F      D  DVVSWN++I+   ++G  
Sbjct: 453 IVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHG 512

Query: 59  LEGLKLFDKMP----QRNDVSWNSILGGLV------------------------------ 84
              L  F +M       N ++  ++L                                  
Sbjct: 513 KRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGVIVHDHLRHSGMESNVFVATAL 572

Query: 85  -----RFGSVDDACRVFNQMP-KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPN 138
                R GS++ A  +F ++  +R +V +  +I+ ++QNG   EAL LF  MQ     P+
Sbjct: 573 ASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQEGSRPD 632

Query: 139 SAILVSLLSACAQLGALDYGNWVYSYIQK 167
               VS+LSAC+  G  D G  ++  +++
Sbjct: 633 EQSFVSVLSACSHGGLADEGWEIFRSMRQ 661


>gi|326497609|dbj|BAK05894.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 676

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 195/544 (35%), Positives = 300/544 (55%), Gaps = 40/544 (7%)

Query: 7   FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFD 66
           +  D+FV +S++  Y+ CG + DA  VFD     D V+W++M+ G+V  G+ ++ ++++ 
Sbjct: 134 YGNDIFVCSSVLNLYAKCGAMDDAVKVFDRMRKRDRVTWSTMVTGFVNAGQPVQAIEMYM 193

Query: 67  KMP---------------------------------------QRNDVSWNSILGGLVRFG 87
           +M                                        Q + V   S++    + G
Sbjct: 194 RMRRDGLEADEVVIVGVMQACAATGDARMGASVHGYLLRHAMQMDVVISTSLVDMYAKNG 253

Query: 88  SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLS 147
             D A RVF  MP R+ VSW  LIS  AQ G   EAL LFR MQ   L PNS  +V  L 
Sbjct: 254 LFDQARRVFELMPHRNDVSWSALISQLAQYGNADEALGLFRMMQVSGLHPNSGPVVGALL 313

Query: 148 ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSA 207
           AC+ LG L  G  ++ +I +  ++LD ++  A+IDMY+KCGS+  A  +F     +D+ +
Sbjct: 314 ACSDLGLLKLGKSIHGFILRT-LELDRMVGTAVIDMYSKCGSLSSAQMLFDKVVSRDLIS 372

Query: 208 YTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMF 267
           +   I     +G   +A  LF+ MK   + PD  ++ ++LSA SH G VE+G ++F+ M 
Sbjct: 373 WNVMIACCGAHGRGRDALSLFQEMKRNEVRPDHATFASLLSALSHSGLVEEGKFWFNCMV 432

Query: 268 DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMG 327
           + +GI+P   H  C+VDLL R+GL+EEA   +AS+  KP   I   LL  C  +   E+G
Sbjct: 433 NEYGIEPGEKHLVCIVDLLARSGLVEEANGLVASLHSKPTISILVALLSGCLNNNKLELG 492

Query: 328 QRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGV 387
           +     ++E      G   L+SN+Y          EVRK M+    K+APGCS IE+ G 
Sbjct: 493 ESTAEKILELQPGDVGVLALVSNLYAAAKNWYKVREVRKLMKDHGSKKAPGCSSIEIRGA 552

Query: 388 VHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKL 447
           +H F+  D+SH + ++I Q   ++  +++  GY  +T  V  D+EE  KE ++  HSE+L
Sbjct: 553 LHTFVMEDQSHPQHRQILQMVMKLDSEMRKMGYIPKTEFVYHDLEEGVKEQLLSRHSERL 612

Query: 448 ALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSC 507
           A AFGL+ T PG+ + ++KN+R+C DCH A+K +SK+  R+I +RD K +HHF+DG+CSC
Sbjct: 613 ATAFGLLNTSPGTRLVVIKNLRVCGDCHDAIKYMSKIADREIVVRDAKRFHHFKDGACSC 672

Query: 508 LEYW 511
            +YW
Sbjct: 673 GDYW 676



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 159/319 (49%), Gaps = 20/319 (6%)

Query: 15  NSLIQFYSVCGRVRDARWVF---DESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQR 71
           N+L+  +S      +A  VF     +   D  ++   ++   R G++  G  + D+    
Sbjct: 73  NALLAAHSRGASPHEALRVFRALPPAARPDSTTFTLALSACARLGDLATGEVVTDRASGA 132

Query: 72  ---NDV-SWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALF 127
              ND+   +S+L    + G++DDA +VF++M KR  V+W  +++GF   G+P +A+ ++
Sbjct: 133 GYGNDIFVCSSVLNLYAKCGAMDDAVKVFDRMRKRDRVTWSTMVTGFVNAGQPVQAIEMY 192

Query: 128 REMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC 187
             M+   LE +  ++V ++ ACA  G    G  V+ Y+ +  +++D ++  +L+DMYAK 
Sbjct: 193 MRMRRDGLEADEVVIVGVMQACAATGDARMGASVHGYLLRHAMQMDVVISTSLVDMYAKN 252

Query: 188 GSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVL 247
           G  D A +VF     ++  ++++ I  LA  G++ EA  LF  M+  G+ P+S   +  L
Sbjct: 253 GLFDQARRVFELMPHRNDVSWSALISQLAQYGNADEALGLFRMMQVSGLHPNSGPVVGAL 312

Query: 248 SACSHLGWVEKGFYYFHSMFDVHGI---KPELDHY--ACMVDLLGRAGLLEEAENFIASM 302
            ACS LG ++ G         +HG      ELD      ++D+  + G L  A+     +
Sbjct: 313 LACSDLGLLKLG-------KSIHGFILRTLELDRMVGTAVIDMYSKCGSLSSAQMLFDKV 365

Query: 303 PMKPDNVIWGTLLGACRVH 321
            +  D + W  ++  C  H
Sbjct: 366 -VSRDLISWNVMIACCGAH 383



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 109/223 (48%), Gaps = 3/223 (1%)

Query: 103 SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVY 162
           S+ +W  L++  ++   P EAL +FR +      P+S      LSACA+LG L  G  V 
Sbjct: 68  SIPAWNALLAAHSRGASPHEALRVFRALPPA-ARPDSTTFTLALSACARLGDLATGEVVT 126

Query: 163 SYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSI 222
                     D  +C++++++YAKCG++D A++VF     +D   +++ + G    G  +
Sbjct: 127 DRASGAGYGNDIFVCSSVLNLYAKCGAMDDAVKVFDRMRKRDRVTWSTMVTGFVNAGQPV 186

Query: 223 EAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACM 282
           +A E++  M+  G+  D +  + V+ AC+  G    G    H     H ++ ++     +
Sbjct: 187 QAIEMYMRMRRDGLEADEVVIVGVMQACAATGDARMG-ASVHGYLLRHAMQMDVVISTSL 245

Query: 283 VDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAE 325
           VD+  + GL ++A      MP + D V W  L+     + NA+
Sbjct: 246 VDMYAKNGLFDQARRVFELMPHRND-VSWSALISQLAQYGNAD 287



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 132/289 (45%), Gaps = 46/289 (15%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++++   DV +  SL+  Y+  G    AR VF+     + VSW+++I+   + G   E 
Sbjct: 230 LLRHAMQMDVVISTSLVDMYAKNGLFDQARRVFELMPHRNDVSWSALISQLAQYGNADEA 289

Query: 62  LKLFDKMPQRNDVSWNS--ILGGLV----------------------------------- 84
           L LF +M Q + +  NS  ++G L+                                   
Sbjct: 290 LGLF-RMMQVSGLHPNSGPVVGALLACSDLGLLKLGKSIHGFILRTLELDRMVGTAVIDM 348

Query: 85  --RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + GS+  A  +F+++  R L+SW V+I+    +GR ++AL+LF+EM+  ++ P+ A  
Sbjct: 349 YSKCGSLSSAQMLFDKVVSRDLISWNVMIACCGAHGRGRDALSLFQEMKRNEVRPDHATF 408

Query: 143 VSLLSACAQLGALDYGN-WVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
            SLLSA +  G ++ G  W    + +  I+        ++D+ A+ G ++ A  +  S  
Sbjct: 409 ASLLSALSHSGLVEEGKFWFNCMVNEYGIEPGEKHLVCIVDLLARSGLVEEANGLVASLH 468

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK--GISPDSISYIAVLS 248
            K   +   A+    +N + +   EL E+   K   + P  +  +A++S
Sbjct: 469 SKPTISILVALLSGCLNNNKL---ELGESTAEKILELQPGDVGVLALVS 514


>gi|116308873|emb|CAH66009.1| H0613H07.7 [Oryza sativa Indica Group]
 gi|116317921|emb|CAH65944.1| H0716A07.2 [Oryza sativa Indica Group]
          Length = 854

 Score =  365 bits (936), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 198/554 (35%), Positives = 298/554 (53%), Gaps = 47/554 (8%)

Query: 5   NSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDL--DVVSWNSMINGYVRNGEILEGL 62
           +  A + FV ++L+  Y+   +V  AR VFD   D    +  WN+MI GY + G   E L
Sbjct: 301 DELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEAL 360

Query: 63  KLFDKMPQR----------------------------------------NDVSWNSILGG 82
           +LF +M                                           N    N+++  
Sbjct: 361 RLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDM 420

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD---LEPNS 139
             R G  D A R+F  +    +VSW  LI+G    G   +A  L REMQ L+   + PN+
Sbjct: 421 YARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNA 480

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
             L++LL  CA L A   G  ++ Y  +  +  D  + +AL+DMYAKCG + L+  VF  
Sbjct: 481 ITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDR 540

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG-ISPDSISYIAVLSACSHLGWVEK 258
              ++   +   I    M+G   EA  LF+ M + G   P+ ++++A L+ACSH G V++
Sbjct: 541 LPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDR 600

Query: 259 GFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNV-IWGTLLGA 317
           G   FH+M   HG++P  D  AC+VD+LGRAG L+EA   + SM      V  W T+LGA
Sbjct: 601 GLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAWSTMLGA 660

Query: 318 CRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAP 377
           CR+HRN  +G+  G  L+E +      Y+LL NIY    +   A EVR  MR+R + + P
Sbjct: 661 CRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEP 720

Query: 378 GCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKE 437
           GCS IE+DG +H F+AG+ +H  ++E++   E +  ++   GY  +T  V+ D+++ +K 
Sbjct: 721 GCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDMDDGDKA 780

Query: 438 TVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHY 497
            V+  HSEKLA+AFGL+   PG+ IR+ KN+R+C+DCH A K +SK+  R+I +RD + +
Sbjct: 781 AVLRCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRF 840

Query: 498 HHFEDGSCSCLEYW 511
           HHF +G CSC +YW
Sbjct: 841 HHFRNGQCSCGDYW 854



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 154/362 (42%), Gaps = 55/362 (15%)

Query: 13  VKNSLIQFYSVCGRVRDARWVFDESDDL--DVVSWNSMINGY------------------ 52
           V N+L+  Y+ CGR+  A  VF    D   D VS+NS+I+                    
Sbjct: 96  VANALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLA 155

Query: 53  ----VRNGEILEGLKLFDKMPQ----------------RNDV-------SWNSILGGLVR 85
               + +  ++  L+    +P                 +N +       ++N++L    R
Sbjct: 156 GGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYAR 215

Query: 86  FGSVDDACRVF-NQMPKRS-LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
            G V DA R+F    P R  +V+W  ++S   Q+G   EA+    +M +L + P+     
Sbjct: 216 LGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFA 275

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKC-IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           S L AC++L  LD G  +++Y+ K   +  +S + +AL+DMYA    +  A QVF    D
Sbjct: 276 SALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPD 335

Query: 203 --KDVSAYTSAIFGLAMNGHSIEAFELFENMKSK-GISPDSISYIAVLSACSHLGWVEKG 259
             K +  + + I G A  G   EA  LF  M+++ G  P   +  +VL AC+       G
Sbjct: 336 SGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACAR-SEAFAG 394

Query: 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACR 319
               H      G+         ++D+  R G  + A    A + + PD V W TL+  C 
Sbjct: 395 KEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDL-PDVVSWNTLITGCV 453

Query: 320 VH 321
           V 
Sbjct: 454 VQ 455



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 120/255 (47%), Gaps = 46/255 (18%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VVK   A + FV+N+L+  Y+  G+   AR +F   D  DVVSWN++I G V  G + + 
Sbjct: 402 VVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADA 461

Query: 62  LKLFDKMPQ-------RNDVSWNSILGGL------------------------VRFGS-- 88
            +L  +M Q        N ++  ++L G                         V  GS  
Sbjct: 462 FQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSAL 521

Query: 89  VDDACR---------VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQ-SLDLEPN 138
           VD   +         VF+++P+R+ ++W VLI  +  +G   EA  LF  M  S +  PN
Sbjct: 522 VDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPN 581

Query: 139 SAILVSLLSACAQLGALDYGNWVYSYIQK-KCIKLDSILCAALIDMYAKCGSIDLAMQVF 197
               ++ L+AC+  G +D G  ++  +++   ++    + A ++D+  + G +D A  + 
Sbjct: 582 EVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMV 641

Query: 198 HSY--GDKDVSAYTS 210
            S   G++ VSA+++
Sbjct: 642 TSMEAGEQQVSAWST 656


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  365 bits (936), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 202/546 (36%), Positives = 305/546 (55%), Gaps = 38/546 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGY--------- 52
           +  N +    F+ N LI  Y     + +A+ +FD+  + +VVSW +MI+ Y         
Sbjct: 311 IFSNGYHPKTFLTNILINMYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRA 370

Query: 53  ----------------------VRNGEILEGLKLFD----KMPQRNDVSWNSILGGLV-R 85
                                 +R  E L  LK       K+   +DV   S L  +  +
Sbjct: 371 MRLLAFMFRDGVMPNMFTFSSVLRACERLYDLKQLHSWIMKVGLESDVFVRSALIDVYSK 430

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
            G + +A +VF +M     V W  +I+ FAQ+    EAL L++ M+ +    + + L S+
Sbjct: 431 MGELLEALKVFREMMTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSV 490

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
           L AC  L  L+ G   + ++ K     D IL  AL+DMY KCGS++ A  +F+    KDV
Sbjct: 491 LRACTSLSLLELGRQAHVHVLK--FDQDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDV 548

Query: 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHS 265
            ++++ I GLA NG S+EA  LFE+MK +G  P+ I+ + VL ACSH G V +G+YYF S
Sbjct: 549 ISWSTMIAGLAQNGFSMEALNLFESMKVQGPKPNHITILGVLFACSHAGLVNEGWYYFRS 608

Query: 266 MFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAE 325
           M +++GI P  +HY CM+DLLGRA  L++    I  M  +PD V W TLL ACR  +N +
Sbjct: 609 MNNLYGIDPGREHYGCMLDLLGRAEKLDDMVKLIHEMNCEPDVVTWRTLLDACRARQNVD 668

Query: 326 MGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELD 385
           +       +++ D    G Y+LLSNIY  + +  +  EVR+TM+KR I++ PGCS IE++
Sbjct: 669 LATYAAKEILKLDPQDTGAYVLLSNIYAISKRWNDVAEVRRTMKKRGIRKEPGCSWIEVN 728

Query: 386 GVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSE 445
             +H F+ GD+SH +  EI +   + + ++   GY  +T  V+ D+E E++E  + YHSE
Sbjct: 729 KQIHAFILGDKSHPQIDEINRQLNQFICRLAGAGYVPDTNFVLQDLEGEQREDSLRYHSE 788

Query: 446 KLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSC 505
           KLA+ FG++       IRI KN++IC DCH   KL++++ +R I IRD   YHHF+DG C
Sbjct: 789 KLAIVFGIMSFPKEKTIRIWKNLKICGDCHKFAKLIAELEQRHIVIRDPIRYHHFQDGVC 848

Query: 506 SCLEYW 511
           SC +YW
Sbjct: 849 SCGDYW 854



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 139/283 (49%), Gaps = 15/283 (5%)

Query: 41  DVVSWNSMINGYVRNGEILEGLK----LFDKMPQRNDVSWNSILGGLVRFGSVDDACRVF 96
           D ++++ +I   + +G + EG +    +F           N ++   V+F  +++A  +F
Sbjct: 284 DSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILINMYVKFNLLEEAQVLF 343

Query: 97  NQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALD 156
           ++MP+R++VSW  +IS ++       A+ L   M    + PN     S+L AC +L  L 
Sbjct: 344 DKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFTFSSVLRACERLYDLK 403

Query: 157 YGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLA 216
               ++S+I K  ++ D  + +ALID+Y+K G +  A++VF      D   + S I   A
Sbjct: 404 Q---LHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMMTGDSVVWNSIIAAFA 460

Query: 217 MNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPEL 276
            +    EA  L+++M+  G   D  +  +VL AC+ L  +E G         VH +K + 
Sbjct: 461 QHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELG-----RQAHVHVLKFDQ 515

Query: 277 DHYA--CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
           D      ++D+  + G LE+A+ FI +   K D + W T++  
Sbjct: 516 DLILNNALLDMYCKCGSLEDAK-FIFNRMAKKDVISWSTMIAG 557



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 92/203 (45%), Gaps = 5/203 (2%)

Query: 123 ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182
           A+ +   M+   +  +S     L+  C   GA+  G  V+ +I        + L   LI+
Sbjct: 269 AMHVLDSMERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILIN 328

Query: 183 MYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSIS 242
           MY K   ++ A  +F    +++V ++T+ I   +    +  A  L   M   G+ P+  +
Sbjct: 329 MYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFT 388

Query: 243 YIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM 302
           + +VL AC  L  +++     HS     G++ ++   + ++D+  + G L EA      M
Sbjct: 389 FSSVLRACERLYDLKQ----LHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREM 444

Query: 303 PMKPDNVIWGTLLGACRVHRNAE 325
            M  D+V+W +++ A   H + +
Sbjct: 445 -MTGDSVVWNSIIAAFAQHSDGD 466


>gi|38344863|emb|CAE01289.2| OSJNBa0020P07.6 [Oryza sativa Japonica Group]
          Length = 854

 Score =  365 bits (936), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 198/554 (35%), Positives = 298/554 (53%), Gaps = 47/554 (8%)

Query: 5   NSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDL--DVVSWNSMINGYVRNGEILEGL 62
           +  A + FV ++L+  Y+   +V  AR VFD   D    +  WN+MI GY + G   E L
Sbjct: 301 DELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEAL 360

Query: 63  KLFDKMPQR----------------------------------------NDVSWNSILGG 82
           +LF +M                                           N    N+++  
Sbjct: 361 RLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDM 420

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD---LEPNS 139
             R G  D A R+F  +    +VSW  LI+G    G   +A  L REMQ L+   + PN+
Sbjct: 421 YARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNA 480

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
             L++LL  CA L A   G  ++ Y  +  +  D  + +AL+DMYAKCG + L+  VF  
Sbjct: 481 ITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDR 540

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG-ISPDSISYIAVLSACSHLGWVEK 258
              ++   +   I    M+G   EA  LF+ M + G   P+ ++++A L+ACSH G V++
Sbjct: 541 LPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDR 600

Query: 259 GFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNV-IWGTLLGA 317
           G   FH+M   HG++P  D  AC+VD+LGRAG L+EA   + SM      V  W T+LGA
Sbjct: 601 GLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMETGEQQVSAWSTMLGA 660

Query: 318 CRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAP 377
           CR+HRN  +G+  G  L+E +      Y+LL NIY    +   A EVR  MR+R + + P
Sbjct: 661 CRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEP 720

Query: 378 GCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKE 437
           GCS IE+DG +H F+AG+ +H  ++E++   E +  ++   GY  +T  V+ D+++ +K 
Sbjct: 721 GCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDMDDGDKA 780

Query: 438 TVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHY 497
            V+  HSEKLA+AFGL+   PG+ IR+ KN+R+C+DCH A K +SK+  R+I +RD + +
Sbjct: 781 AVLRCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRF 840

Query: 498 HHFEDGSCSCLEYW 511
           HHF +G CSC +YW
Sbjct: 841 HHFRNGQCSCGDYW 854



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 154/362 (42%), Gaps = 55/362 (15%)

Query: 13  VKNSLIQFYSVCGRVRDARWVFDESDDL--DVVSWNSMINGY------------------ 52
           V N+L+  Y+ CGR+  A  VF    D   D VS+NS+I+                    
Sbjct: 96  VANALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLA 155

Query: 53  ----VRNGEILEGLKLFDKMPQ----------------RNDV-------SWNSILGGLVR 85
               + +  ++  L+    +P                 +N +       ++N++L    R
Sbjct: 156 GGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYAR 215

Query: 86  FGSVDDACRVF-NQMPKRS-LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
            G V DA R+F    P R  +V+W  ++S   Q+G   EA+    +M +L + P+     
Sbjct: 216 LGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFA 275

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKC-IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           S L AC++L  LD G  +++Y+ K   +  +S + +AL+DMYA    +  A QVF    D
Sbjct: 276 SALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPD 335

Query: 203 --KDVSAYTSAIFGLAMNGHSIEAFELFENMKSK-GISPDSISYIAVLSACSHLGWVEKG 259
             K +  + + I G A  G   EA  LF  M+++ G  P   +  +VL AC+       G
Sbjct: 336 SGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACAR-SEAFAG 394

Query: 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACR 319
               H      G+         ++D+  R G  + A    A + + PD V W TL+  C 
Sbjct: 395 KEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDL-PDVVSWNTLITGCV 453

Query: 320 VH 321
           V 
Sbjct: 454 VQ 455



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 119/255 (46%), Gaps = 46/255 (18%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VVK   A + FV+N+L+  Y+  G+   AR +F   D  DVVSWN++I G V  G + + 
Sbjct: 402 VVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADA 461

Query: 62  LKLFDKMPQ-------RNDVSWNSILGGL------------------------VRFGS-- 88
            +L  +M Q        N ++  ++L G                         V  GS  
Sbjct: 462 FQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSAL 521

Query: 89  VDDACR---------VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQ-SLDLEPN 138
           VD   +         VF+++P+R+ ++W VLI  +  +G   EA  LF  M  S +  PN
Sbjct: 522 VDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPN 581

Query: 139 SAILVSLLSACAQLGALDYGNWVYSYIQK-KCIKLDSILCAALIDMYAKCGSID--LAMQ 195
               ++ L+AC+  G +D G  ++  +++   ++    + A ++D+  + G +D   AM 
Sbjct: 582 EVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMV 641

Query: 196 VFHSYGDKDVSAYTS 210
                G++ VSA+++
Sbjct: 642 TSMETGEQQVSAWST 656


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  365 bits (936), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 192/548 (35%), Positives = 306/548 (55%), Gaps = 39/548 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEI---- 58
           +K  F YD  + N+ +  Y+ CG +  A+ VF       + SWN++I GY ++ +     
Sbjct: 406 LKQEFVYDELLANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNALIGGYAQSSDPRLSL 465

Query: 59  ---------------------------LEGLKLFDKMP--------QRNDVSWNSILGGL 83
                                      L+ L+L  ++         +R+   + S+L   
Sbjct: 466 DAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLY 525

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
           +  G +     +F+ M   SLVSW  +I+G  QNG P+ AL LFR+M    ++P    ++
Sbjct: 526 IHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNGFPERALGLFRQMVLYGIQPCGISMM 585

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           ++  AC+ L +L  G   ++Y  K  ++ ++ +  ++IDMYAK G+I  + +VF+   +K
Sbjct: 586 TVFGACSLLPSLRLGREAHAYALKHLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLKEK 645

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
             +++ + I G  M+G + EA +LFE M+  G +PD ++++ VL+AC+H G + +G  Y 
Sbjct: 646 SAASWNAMIMGYGMHGRAKEAIKLFEEMQRTGRNPDDLTFLGVLTACNHSGLLHEGLRYL 705

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
             M    G+KP L HYAC++D+LGRAG L+ A    A M  +PD  IW +LL  CR+H+N
Sbjct: 706 DQMKSSFGLKPNLKHYACVIDMLGRAGQLDNALRVAAEMSEEPDVGIWNSLLSWCRIHQN 765

Query: 324 AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE 383
            EMG+++   L   +      Y+LLSN+Y    K ++  +VR+ M++  +++  GCS IE
Sbjct: 766 LEMGEKVAAKLFVLEPEKPENYVLLSNLYAGLGKWDDVRQVRQRMKEMSLRKDAGCSWIE 825

Query: 384 LDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYH 443
           L+G V  F+ G+R  +  +EI   W  +  KI   GY  +T SV  D+ EEEK   +  H
Sbjct: 826 LNGKVFSFVVGERFLDGFEEIKSLWSILEMKIWKMGYRPDTSSVQHDLSEEEKIEQLRGH 885

Query: 444 SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
           SEKLA+ +GLI T  G+ +R+ KN+RIC DCH+A KL+SKV +R+I +RD K +HHF  G
Sbjct: 886 SEKLAITYGLIKTSEGTTLRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFNKG 945

Query: 504 SCSCLEYW 511
            CSC +YW
Sbjct: 946 FCSCGDYW 953



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 93/394 (23%), Positives = 167/394 (42%), Gaps = 70/394 (17%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGE--- 57
           +VVK     D+FV N+L+ FY   G V DA  +FD   + ++VSWNSMI  +  NG+   
Sbjct: 212 LVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLFDIMPERNLVSWNSMIRVFSDNGDDGA 271

Query: 58  -ILEGLKLFDKMP-----------------------QRNDVSWNSILGGLVRFGSVDDAC 93
            + +   +   +P                        +  V  N+++    ++G + D+ 
Sbjct: 272 FMPDVATVVTVLPVCAREREIGVGKGVHGWAVKLSLDKELVVNNALMDMYSKWGCIIDSQ 331

Query: 94  RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM--QSLDLEPNSAILVSLLSACAQ 151
            +F     +++VSW  ++ GF+  G       L R+M   S D++ +   +++ +  C  
Sbjct: 332 MIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVCFD 391

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSA 211
              L     ++ Y  K+    D +L  A +  YAKCGS+  A +VFH    K ++++ + 
Sbjct: 392 ESVLPSLKELHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNAL 451

Query: 212 IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL---------------GWV 256
           I G A +     + +    MK+ G+ PD+ +  ++LSACS L                W+
Sbjct: 452 IGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGKEVHGFIIRNWL 511

Query: 257 EKGFYYFHSMFDVHGIKPELDHYACMVDLLGRA-------------------GLLEEAEN 297
           E+  + + S+  ++    EL    C V +L  A                   G  E A  
Sbjct: 512 ERDLFVYLSVLSLYIHCGEL----CTVQVLFDAMEDNSLVSWNTVITGHLQNGFPERALG 567

Query: 298 FIASMPM---KPDNVIWGTLLGACRVHRNAEMGQ 328
               M +   +P  +   T+ GAC +  +  +G+
Sbjct: 568 LFRQMVLYGIQPCGISMMTVFGACSLLPSLRLGR 601



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 105/236 (44%), Gaps = 42/236 (17%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++N    D+FV  S++  Y  CG +   + +FD  +D  +VSWN++I G+++NG     
Sbjct: 506 IIRNWLERDLFVYLSVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNGFPERA 565

Query: 62  LKLFDKMP----QRNDVSWNSILGG----------------------------------- 82
           L LF +M     Q   +S  ++ G                                    
Sbjct: 566 LGLFRQMVLYGIQPCGISMMTVFGACSLLPSLRLGREAHAYALKHLLEDNAFIACSIIDM 625

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G++  + +VFN + ++S  SW  +I G+  +GR KEA+ LF EMQ     P+    
Sbjct: 626 YAKNGAITQSSKVFNGLKEKSAASWNAMIMGYGMHGRAKEAIKLFEEMQRTGRNPDDLTF 685

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSIL--CAALIDMYAKCGSIDLAMQV 196
           + +L+AC   G L  G   Y    K    L   L   A +IDM  + G +D A++V
Sbjct: 686 LGVLTACNHSGLLHEG-LRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDNALRV 740



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 120/276 (43%), Gaps = 54/276 (19%)

Query: 17  LIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQR----- 71
           +I  Y++CG   D+R  FD     ++  WN++I+ Y RN    E L++F KM  +     
Sbjct: 126 IITMYAMCGSPDDSRSAFDALRSKNLFQWNAVISSYSRNELYHEVLEMFIKMISKTHLLP 185

Query: 72  ---------------NDVSWNSILGGLV--------------------RFGSVDDACRVF 96
                          +DV     + GLV                      G V DA ++F
Sbjct: 186 DNFTFPCVIKACAGISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLF 245

Query: 97  NQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALD 156
           + MP+R+LVSW  +I  F+ NG     +            P+ A +V++L  CA+   + 
Sbjct: 246 DIMPERNLVSWNSMIRVFSDNGDDGAFM------------PDVATVVTVLPVCAREREIG 293

Query: 157 YGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLA 216
            G  V+ +  K  +  + ++  AL+DMY+K G I  +  +F    +K+V ++ + + G +
Sbjct: 294 VGKGVHGWAVKLSLDKELVVNNALMDMYSKWGCIIDSQMIFKLNNNKNVVSWNTMVGGFS 353

Query: 217 MNGHSIEAFELFENM--KSKGISPDSISYIAVLSAC 250
             G     F+L   M   S+ +  D ++ +  +  C
Sbjct: 354 AEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVC 389



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 93/213 (43%), Gaps = 10/213 (4%)

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVS------LLSACAQLGALDYGNWVYSY 164
           IS F + G   ++  + +E    D   +   L+       LL A  +   ++ G  ++  
Sbjct: 50  ISNFCETGDLDKSFRVVQEFAGDDESSSDVFLLVREALGLLLQASGKRKDIEMGRKIHHL 109

Query: 165 IQKKC-IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIE 223
           +     ++ D +LC  +I MYA CGS D +   F +   K++  + + I   + N    E
Sbjct: 110 VSGSTRLRSDDVLCTRIITMYAMCGSPDDSRSAFDALRSKNLFQWNAVISSYSRNELYHE 169

Query: 224 AFELFENMKSKG-ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACM 282
             E+F  M SK  + PD+ ++  V+ AC+ +  V  G    H +    G+  +L     +
Sbjct: 170 VLEMFIKMISKTHLLPDNFTFPCVIKACAGISDVGIGL-AVHGLVVKTGLVEDLFVGNAL 228

Query: 283 VDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
           V   G  G + +A      MP + + V W +++
Sbjct: 229 VSFYGTHGFVSDALKLFDIMPER-NLVSWNSMI 260



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 112/258 (43%), Gaps = 33/258 (12%)

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE 129
           + +DV    I+      GS DD+   F+ +  ++L  W  +IS +++N    E L +F +
Sbjct: 117 RSDDVLCTRIITMYAMCGSPDDSRSAFDALRSKNLFQWNAVISSYSRNELYHEVLEMFIK 176

Query: 130 MQS-LDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCG 188
           M S   L P++     ++ ACA +  +  G  V+  + K  +  D  +  AL+  Y   G
Sbjct: 177 MISKTHLLPDNFTFPCVIKACAGISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHG 236

Query: 189 SIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248
            +  A+++F    ++++ ++ S I   + NG                  PD  + + VL 
Sbjct: 237 FVSDALKLFDIMPERNLVSWNSMIRVFSDNG------------DDGAFMPDVATVVTVLP 284

Query: 249 ACSH---LGWVEKGFYYFHSMFDVHG--IKPELDHYA----CMVDLLGRAGLLEEAENFI 299
            C+    +G V KG         VHG  +K  LD        ++D+  + G + +++  I
Sbjct: 285 VCAREREIG-VGKG---------VHGWAVKLSLDKELVVNNALMDMYSKWGCIIDSQ-MI 333

Query: 300 ASMPMKPDNVIWGTLLGA 317
             +    + V W T++G 
Sbjct: 334 FKLNNNKNVVSWNTMVGG 351


>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 654

 Score =  365 bits (936), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 201/557 (36%), Positives = 304/557 (54%), Gaps = 49/557 (8%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +V +    D ++   LI  Y   G V  A  VFDE+ +  +  WN++           + 
Sbjct: 100 LVGSGLDQDPYLATKLINMYCDLGSVDHACKVFDETREKTIFVWNAIFRALAMASRGEDL 159

Query: 62  LKLFDKMP----QRNDVSWNSILGGLV--------------------------------- 84
           L L+ +M       N  ++  +L   V                                 
Sbjct: 160 LVLYGQMNWIGIPSNRFTYTYVLKACVVSELSICPLRKGKEIHAHILRHGYEGHVHVMTT 219

Query: 85  ------RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM--QSLDLE 136
                 RFG V  A  VF  MP +++VSW  +I+ +A+N  P +AL LF+ M  ++ D  
Sbjct: 220 LLDVYARFGYVSYASSVFGAMPDKNIVSWSAMIACYAKNEMPMKALELFQIMMLEACDTV 279

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCA--ALIDMYAKCGSIDLAM 194
           PN   +VS+L ACA L AL++G  V++Y+ ++   LDS L     LI MY +CG I    
Sbjct: 280 PNPITMVSVLQACASLAALEHGKLVHAYVLRR--GLDSTLPVLNTLITMYGRCGEISTGQ 337

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
           +VF     +DV ++ S I    M+G   +A ++FENM ++G+SP  I++I VL ACSH G
Sbjct: 338 RVFDYMKKRDVISWNSLISIYGMHGLGKKAIQIFENMINRGVSPSYITFITVLCACSHAG 397

Query: 255 WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTL 314
            VE+    F SM + + I P ++HYACMVD+LGRA  L+EA   I +M  KP   +WG+L
Sbjct: 398 LVEEAKILFESMLNKYRIHPRMEHYACMVDILGRANRLDEAIELIQNMDFKPGPTVWGSL 457

Query: 315 LGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIK 374
           LG+CR+H N E+ +R   ML E +  + G Y+LLS+IY ++    +   VRK +  R ++
Sbjct: 458 LGSCRIHCNVELAERASAMLFELEPKNAGNYVLLSHIYAKSRMWNDVRRVRKQLESRGLQ 517

Query: 375 RAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEE 434
           + P CS IE+   ++  ++ +  + + +E+  F   ++ +IKN GY  +T  V +D++EE
Sbjct: 518 KIPSCSWIEVKRKIYSLVSIEEYNPQIEELCAFLITLLTEIKNQGYVPQTNVVTYDLDEE 577

Query: 435 EKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDR 494
           EKE ++  HS KLA+AFGLI T  G +IRI  N+R+C DCH+ MK VSK   R+I +RD 
Sbjct: 578 EKERIVLGHSGKLAVAFGLINTSKGEIIRISNNLRLCEDCHAFMKFVSKFTNREILLRDV 637

Query: 495 KHYHHFEDGSCSCLEYW 511
             +H F+DG CSC +YW
Sbjct: 638 NRFHCFKDGVCSCGDYW 654



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 92/221 (41%), Gaps = 11/221 (4%)

Query: 110 LISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC 169
           LI    + G  K+A+ L       +  P       L+++C +  +L  G  V+  +    
Sbjct: 49  LIQSLCRGGNLKQAVQLL----CCEPNPTKKTFELLINSCIEQNSLSDGVDVHHRLVGSG 104

Query: 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFE 229
           +  D  L   LI+MY   GS+D A +VF    +K +  + +    LAM     +   L+ 
Sbjct: 105 LDQDPYLATKLINMYCDLGSVDHACKVFDETREKTIFVWNAIFRALAMASRGEDLLVLYG 164

Query: 230 NMKSKGISPDSISYIAVLSAC--SHLGW--VEKGFYYFHSMFDVHGIKPELDHYACMVDL 285
            M   GI  +  +Y  VL AC  S L    + KG    H+    HG +  +     ++D+
Sbjct: 165 QMNWIGIPSNRFTYTYVLKACVVSELSICPLRKG-KEIHAHILRHGYEGHVHVMTTLLDV 223

Query: 286 LGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEM 326
             R G +  A +   +MP K  N++  + + AC       M
Sbjct: 224 YARFGYVSYASSVFGAMPDK--NIVSWSAMIACYAKNEMPM 262


>gi|449510831|ref|XP_004163774.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 556

 Score =  365 bits (936), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 205/525 (39%), Positives = 308/525 (58%), Gaps = 17/525 (3%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDL--------DVVSWNSMIN-- 50
           +V K+ F  +VFV ++L+  Y+ C  +  A  VF+E   L        D VS++S+ +  
Sbjct: 35  LVWKHGFLAEVFVVSALVDMYAKCCDMLMAEKVFEEMPTLLLENLTALDEVSFSSVFSAC 94

Query: 51  ---GYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLV-RFGSVDDACRVFNQMPKRSLVS 106
              G +  G+ + G+ L  K+   N V  N+ L  +  + G  +D  ++F+    R +V+
Sbjct: 95  ANAGNLEFGKQVHGVAL--KLGVWNLVYINNSLSDMYGKCGLFNDVAKLFSNTGARDVVT 152

Query: 107 WVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQ 166
           W ++I  +  N   ++A   F  M+     P+ A   S+L +CA L AL  G  +++ I 
Sbjct: 153 WNIMIMAYVYNHNYEDACNSFWMMRRKGSIPDEASYSSVLHSCANLAALYQGTLIHNQII 212

Query: 167 KKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFE 226
           +     +  + ++LI MYAKCGS+  A Q+F    D++V  +T+ I     +GH+    E
Sbjct: 213 RSGFVKNLRVASSLITMYAKCGSLVDAFQIFEETEDRNVVCWTAIIAACQQHGHANWVVE 272

Query: 227 LFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLL 286
           LFE M  +GI PD I++++VLSACSH G VE+GF+YF+SM  VHGI P  +HYAC+VDLL
Sbjct: 273 LFEQMLREGIKPDYITFVSVLSACSHTGRVEEGFFYFNSMIKVHGIYPGHEHYACIVDLL 332

Query: 287 GRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYI 346
            RAG L+ A+ FI  MP+KPD  +WG LL ACR H N  MG+ +   L + + ++ G Y+
Sbjct: 333 SRAGELDRAKRFIELMPIKPDASVWGALLSACRNHSNLIMGKEVALKLFDLEPDNPGNYV 392

Query: 347 LLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQ 406
           LL NI         A+EVR+ M    +++ PGCS I++    + F   D+SHEKT+EIY+
Sbjct: 393 LLCNILTRNGMLNEADEVRRKMESIGVRKEPGCSWIDIKNSTYVFTVHDKSHEKTKEIYE 452

Query: 407 FWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVK 466
             E++ + +K  GY  ET   + +  EE KE  + YHSEK+ALAFGL+    G+ IRI K
Sbjct: 453 MLEKLKELVKKKGYVAETEFAI-NTAEEYKEQSLWYHSEKIALAFGLLSLPAGAPIRIKK 511

Query: 467 NIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           N+R C DCH+ MK  S++F R+I +RD   +HHF +G CSC +YW
Sbjct: 512 NLRTCGDCHTVMKFASEIFAREIIVRDINRFHHFTNGICSCGDYW 556



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 84/202 (41%), Gaps = 41/202 (20%)

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
           M+   + PN     ++LSAC    A  +G  ++S + K     +  + +AL+DMYAKC  
Sbjct: 1   MRRSGVYPNHYTFSAVLSACTDTTASVHGEQMHSLVWKHGFLAEVFVVSALVDMYAKCCD 60

Query: 190 IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
           + +A +VF                             L EN+ +     D +S+ +V SA
Sbjct: 61  MLMAEKVFEEMPTL-----------------------LLENLTAL----DEVSFSSVFSA 93

Query: 250 CSHLGWVEKGFYYFHSMFDVHGIKPELDHY------ACMVDLLGRAGLLEEAENFIASMP 303
           C++ G +E G         VHG+  +L  +        + D+ G+ GL  +     ++  
Sbjct: 94  CANAGNLEFG-------KQVHGVALKLGVWNLVYINNSLSDMYGKCGLFNDVAKLFSNTG 146

Query: 304 MKPDNVIWGTLLGACRVHRNAE 325
            + D V W  ++ A   + N E
Sbjct: 147 AR-DVVTWNIMIMAYVYNHNYE 167



 Score = 39.7 bits (91), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 8/107 (7%)

Query: 231 MKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE-------LDHYACMV 283
           M+  G+ P+  ++ AVLSAC+       G    HS+   HG   E       +D YA   
Sbjct: 1   MRRSGVYPNHYTFSAVLSACTDTTASVHG-EQMHSLVWKHGFLAEVFVVSALVDMYAKCC 59

Query: 284 DLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
           D+L    + EE    +       D V + ++  AC    N E G+++
Sbjct: 60  DMLMAEKVFEEMPTLLLENLTALDEVSFSSVFSACANAGNLEFGKQV 106


>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Vitis vinifera]
          Length = 913

 Score =  364 bits (935), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 190/518 (36%), Positives = 299/518 (57%), Gaps = 8/518 (1%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V++N F  DV+V  SLI  Y     +  A+ VFD   + ++ +WNS+++GY   G   + 
Sbjct: 396 VLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDA 455

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSL----VSWVVLISG 113
           L+L ++M +     + V+WN ++ G   +G   +A  V +Q     L    VSW  LISG
Sbjct: 456 LRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAVLHQTKSLGLTPNVVSWTALISG 515

Query: 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD 173
            +Q G  +++L  F +MQ   + PNSA +  LL ACA L  L  G  ++    +     D
Sbjct: 516 SSQAGNNRDSLKFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIED 575

Query: 174 SILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKS 233
             +  ALIDMY+K  S+  A +VF    +K ++++   I G A+ G   EA  +F  M+ 
Sbjct: 576 VFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQK 635

Query: 234 KGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLE 293
            G+ PD+I++ A+LSAC + G + +G+ YF SM   + I P L+HY CMVDLLGRAG L+
Sbjct: 636 VGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLD 695

Query: 294 EAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYV 353
           EA + I +MP+KPD  IWG LLG+CR+H+N +  +     L + + N+   YIL+ N+Y 
Sbjct: 696 EAWDLIHTMPLKPDATIWGALLGSCRIHKNLKFAETAAKNLFKLEPNNSANYILMMNLYS 755

Query: 354 ETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVK 413
              + E+ + +R+ M    ++     S I+++  VH F + ++ H    +IY    ++V 
Sbjct: 756 IFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVS 815

Query: 414 KIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSD 473
           ++K  GY  +   V  +++E EK+ ++  H+EKLA+ +GLI  K G  IR++KN RICSD
Sbjct: 816 EMKKLGYVPDVNCVYQNMDEVEKQKILLSHTEKLAITYGLIKMKAGEPIRVIKNTRICSD 875

Query: 474 CHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           CHSA K +S V  R++ +RD   +HHF +G CSC ++W
Sbjct: 876 CHSAAKYISLVKARELFLRDGVRFHHFREGKCSCNDFW 913



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 172/350 (49%), Gaps = 9/350 (2%)

Query: 32  WVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDD 91
           +VF    D DV   N +I+ Y +NG++    ++FD M  RN  SWNS++      G ++D
Sbjct: 259 YVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLND 318

Query: 92  ACRVFNQMP----KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLS 147
           A  +F ++     K  +V+W  L+SG   +G  +E L + + MQ    +PNS+ + S+L 
Sbjct: 319 AWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQ 378

Query: 148 ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSA 207
           A ++LG L+ G   + Y+ +     D  +  +LIDMY K  S+  A  VF +  ++++ A
Sbjct: 379 AISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFA 438

Query: 208 YTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMF 267
           + S + G +  G   +A  L   M+ +GI PD +++  ++S  +  G  ++     H   
Sbjct: 439 WNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAVLHQTK 498

Query: 268 DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMK---PDNVIWGTLLGACRVHRNA 324
            + G+ P +  +  ++    +AG   ++  F A M  +   P++     LL AC      
Sbjct: 499 SL-GLTPNVVSWTALISGSSQAGNNRDSLKFFAQMQQEGVMPNSASITCLLRACASLSLL 557

Query: 325 EMGQRIGNMLIESDQNHDGRY-ILLSNIYVETLKGENAEEVRKTMRKRKI 373
           + G+ I  + I +    D      L ++Y ++   +NA +V + ++ + +
Sbjct: 558 QKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTL 607



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 106/208 (50%), Gaps = 1/208 (0%)

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
           R   ++ A +VF++MP    + W   I    Q+ + ++ + LFR+MQ   L+  +A +V 
Sbjct: 180 RCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVR 239

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           +L AC ++GAL+    ++ Y+ +  +  D  LC  LI MY+K G ++LA +VF S  +++
Sbjct: 240 VLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRN 299

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
            S++ S I   A  G   +A+ LF  ++S  + PD +++  +LS     G+ E+      
Sbjct: 300 TSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQ 359

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLL 292
            M    G KP       ++  +   G L
Sbjct: 360 RM-QGEGFKPNSSSMTSVLQAISELGFL 386



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 113/291 (38%), Gaps = 36/291 (12%)

Query: 67  KMPQR--NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQN-GRPKEA 123
           K+PQ+   D +  +++   + FG    A  VF     R+ + W   +  F  + G     
Sbjct: 58  KLPQKWNPDAAAKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIV 117

Query: 124 LALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDM 183
           L +F+E+    +  +S +    L  C ++  +  G  ++  + K+   LD  L  AL++ 
Sbjct: 118 LEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNF 177

Query: 184 YAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISY 243
           Y +C  ++ A QVFH   + +   +  AI     +    +  ELF  M+   +  ++ + 
Sbjct: 178 YGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATI 237

Query: 244 IAVLSACSHLGWVEKG------FYYFHSMFDVHGIKPELDHYA----------------- 280
           + VL AC  +G +          + F    DV    P +  Y+                 
Sbjct: 238 VRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMEN 297

Query: 281 -------CMVDLLGRAGLLEEAENF---IASMPMKPDNVIWGTLLGACRVH 321
                   M+      G L +A +    + S  MKPD V W  LL    +H
Sbjct: 298 RNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLH 348


>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 874

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 200/575 (34%), Positives = 314/575 (54%), Gaps = 77/575 (13%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +++ N    + FV  +L+  Y  C +    R VFD      +  WN+MI GYVRN    E
Sbjct: 313 VLMNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNAMIAGYVRNEFDYE 372

Query: 61  GLKLFDKMP-----QRNDVSWNSILGGLVR------------------------------ 85
            ++LF +M        N V+ +S+L   VR                              
Sbjct: 373 AIELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDKEGIHSCVVKWGFEKDKYVQNALM 432

Query: 86  -----FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQ--------- 131
                 G ++ A  +F  M ++ +VSW  +I+G+   GR  +AL L  +MQ         
Sbjct: 433 DMYSRMGRIEIARSIFGSMNRKDIVSWNTMITGYVVCGRHDDALNLLHDMQRGQAEHRIN 492

Query: 132 ---------SLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182
                    +  L+PNS  L+++L  CA L AL  G  +++Y  K+ +  D  + +AL+D
Sbjct: 493 TFDDYEDNKNFPLKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQMLSKDVAVGSALVD 552

Query: 183 MYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG-----IS 237
           MYAKCG ++L+  VF     ++V  +   I    M+G   EA +LF  M  +G     I 
Sbjct: 553 MYAKCGCLNLSRTVFEQMSVRNVITWNVLIMAYGMHGKGEEALKLFRRMVEEGDNNREIR 612

Query: 238 PDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAEN 297
           P+ ++YIA+ ++ SH G V++G   F++M   HGI+P  DHYAC+VDLLGR+G +EEA N
Sbjct: 613 PNEVTYIAIFASLSHSGMVDEGLNLFYTMKAKHGIEPTSDHYACLVDLLGRSGQIEEAYN 672

Query: 298 FIASMPMKPDNV-IWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETL 356
            I +MP     V  W +LLGAC++H+N E+G+     L   D N      +L     +++
Sbjct: 673 LIKTMPSNMKKVDAWSSLLGACKIHQNLEIGEIAAKNLFVLDPN------VLDYGTKQSM 726

Query: 357 KGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIK 416
            G       + M+++ +++ PGCS IE    VH+FLAGD SH +++E++++ E +  ++K
Sbjct: 727 LG-------RKMKEKGVRKEPGCSWIEHGDEVHKFLAGDVSHPQSKEVHEYLETLSLRMK 779

Query: 417 NYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHS 476
             GY  +T  V+ ++ EEEKET++  HSE+LA+AFGL+ T PG+ IR+ KN+R+C+DCH 
Sbjct: 780 KEGYVPDTSCVLHNVGEEEKETMLCGHSERLAIAFGLLNTSPGTTIRVAKNLRVCNDCHV 839

Query: 477 AMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           A K +SK+  R+I +RD + +HHF +G+CSC +YW
Sbjct: 840 ATKFISKIVDREIILRDVRRFHHFRNGTCSCGDYW 874



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 108/376 (28%), Positives = 156/376 (41%), Gaps = 64/376 (17%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V K   A    V NSL+  Y  CG +  AR VFDE  + D VSWNSMIN   R  E    
Sbjct: 111 VFKFGQALPTAVPNSLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELA 170

Query: 62  LKLFDKMPQRN----------------------------------DVSW-----NSILGG 82
           + LF  M   N                                  +  W     N+++  
Sbjct: 171 VHLFRLMLLENVGPTSFTLVSVAHACSNLINGLLLGKQVHAFVLRNGDWRTFTNNALVTM 230

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G V +A  +F+    + LVSW  +IS  +QN R +EAL     M    + PN   L
Sbjct: 231 YAKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTL 290

Query: 143 VSLLSACAQLGALDYGNWVYSYI-QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
            S+L AC+ L  L  G  +++++     +  +S +  AL+DMY  C   +    VF    
Sbjct: 291 ASVLPACSHLEMLGCGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMF 350

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK-GISPDSISYIAVLSACSHLGWVEKGF 260
            + ++ + + I G   N    EA ELF  M  + G+SP+S++  +VL AC          
Sbjct: 351 RRTIAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRC------- 403

Query: 261 YYFHSMFDVHGIKP-------ELDHYA--CMVDLLGRAGLLEEAENFIASMPMKPDNVIW 311
               S  D  GI         E D Y    ++D+  R G +E A +   SM  K D V W
Sbjct: 404 ---ESFLDKEGIHSCVVKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSMNRK-DIVSW 459

Query: 312 GTLLGA---CRVHRNA 324
            T++     C  H +A
Sbjct: 460 NTMITGYVVCGRHDDA 475



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 68/132 (51%)

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
           +A++ +  M +  + P++    ++L A A +  L+ G  +++++ K    L + +  +L+
Sbjct: 68  QAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAVPNSLV 127

Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
           +MY KCG ID A +VF    ++D  ++ S I           A  LF  M  + + P S 
Sbjct: 128 NMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLENVGPTSF 187

Query: 242 SYIAVLSACSHL 253
           + ++V  ACS+L
Sbjct: 188 TLVSVAHACSNL 199


>gi|297837569|ref|XP_002886666.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332507|gb|EFH62925.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 608

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 206/555 (37%), Positives = 308/555 (55%), Gaps = 64/555 (11%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRN-GEILEGLKLFDKMP 69
           +F+   ++Q  S    V  A  VFD  ++     WN++I     +     E   L+ KM 
Sbjct: 64  LFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKML 123

Query: 70  QRNDVSWNS------------ILG------------------------GLVRF----GSV 89
           +R + + +             I G                        GL+ F    G +
Sbjct: 124 ERGESAPDKHTFPFVLKACAYIFGLSEGKQVHCQIVKHGFSGDVYVNNGLIHFYGSCGCL 183

Query: 90  DDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
           D A +VF++MP+RSLVSW  +I    + G    AL LFR+MQ    EP+   + S+LSAC
Sbjct: 184 DLARKVFDEMPERSLVSWNSMIDALVRVGEYDSALQLFRDMQK-SFEPDGYTMQSVLSAC 242

Query: 150 AQLGALDYGNWVYSYIQKKC---IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
           A LG+L  G W + ++ + C   + +D ++  +LI+MY KCGS+ +A QVF      D++
Sbjct: 243 AGLGSLSLGTWSHVFLLRNCDVDVAMDVLIKNSLIEMYCKCGSLRMAEQVFQGMRKHDLA 302

Query: 207 AYTSAIFGLAMNGHSIEAFELFENM--KSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           ++ + I G A +G + EA   F+ M  + K + P+S++++A+L AC+H G V KG  YF 
Sbjct: 303 SWNAMILGFATHGKAEEAMNCFDCMVKEGKNVKPNSVTFVALLIACNHRGMVNKGRQYFD 362

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC-RVHRN 323
            M   +GI+P L+HY C++DLL RAG + EA + + SMPMKPD VIW +LL AC +   +
Sbjct: 363 MMVREYGIEPALEHYGCIIDLLARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGAS 422

Query: 324 AEMGQRIGNMLI-------ESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRA 376
            E+ + I   +I        S+ N  G Y+LLS +Y    +  +   VRK M    I++ 
Sbjct: 423 VELSEEIARNIIGTMEDNQSSNSNCSGAYVLLSRVYASANRWNDVGIVRKLMSDHGIRKE 482

Query: 377 PGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEK 436
           PGCS IE++G+ +EF AGD SH +T++IYQ  + I  ++         RS++    +  K
Sbjct: 483 PGCSSIEINGISNEFFAGDTSHPQTKQIYQQLKVIDDRL---------RSIVDATNDSSK 533

Query: 437 ETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKH 496
           E  +  HSE+LA+AFGLI   P + IRI KN+R+CSDCH   KL+SKVF  +I +RDR  
Sbjct: 534 EYSLRLHSERLAIAFGLISLPPQTPIRIFKNLRVCSDCHEVTKLISKVFNTEIIVRDRVR 593

Query: 497 YHHFEDGSCSCLEYW 511
           +HHF+DGSCSCL+YW
Sbjct: 594 FHHFKDGSCSCLDYW 608



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 88/296 (29%), Positives = 130/296 (43%), Gaps = 76/296 (25%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +VK+ F+ DV+V N LI FY  CG +  AR VFDE  +  +VSWNSMI+  VR GE    
Sbjct: 158 IVKHGFSGDVYVNNGLIHFYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRVGEYDSA 217

Query: 62  LKLFDKMPQ---------------------------------RN---DVSW-----NSIL 80
           L+LF  M +                                 RN   DV+      NS++
Sbjct: 218 LQLFRDMQKSFEPDGYTMQSVLSACAGLGSLSLGTWSHVFLLRNCDVDVAMDVLIKNSLI 277

Query: 81  GGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM--QSLDLEPN 138
               + GS+  A +VF  M K  L SW  +I GFA +G+ +EA+  F  M  +  +++PN
Sbjct: 278 EMYCKCGSLRMAEQVFQGMRKHDLASWNAMILGFATHGKAEEAMNCFDCMVKEGKNVKPN 337

Query: 139 SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH 198
           S   V+LL AC   G ++ G   +                   DM  +   I+ A++   
Sbjct: 338 SVTFVALLIACNHRGMVNKGRQYF-------------------DMMVREYGIEPALE--- 375

Query: 199 SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
                    Y   I  LA  G+  EA ++  +M  K   PD++ + ++L AC   G
Sbjct: 376 --------HYGCIIDLLARAGYITEAIDMVMSMPMK---PDAVIWRSLLDACCKKG 420


>gi|224123200|ref|XP_002330363.1| predicted protein [Populus trichocarpa]
 gi|222871567|gb|EEF08698.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  364 bits (934), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 204/546 (37%), Positives = 302/546 (55%), Gaps = 45/546 (8%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D    N L+  Y    R++ A  +FDE  + +VVSW S+++GYV  G     L L+ KM 
Sbjct: 40  DTITTNHLLNSYLRFRRIQYAHHLFDEMHEPNVVSWTSLMSGYVNMGRPQSALWLYTKMS 99

Query: 70  QRNDVSWN-----------SIL-------------------GGLV----------RFGSV 89
           + ++VS N           SIL                   G LV          +   V
Sbjct: 100 E-SEVSPNGFTLATVINSCSILADLKTGKMVHAHVQILGLQGNLVVCSSLVDMYGKCNDV 158

Query: 90  DDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE-PNSAILVSLLSA 148
           D A  VF+ M  R++VSW  +I+G+AQNG+  EAL +FRE  S  +E PN  +L S+++A
Sbjct: 159 DGARMVFDSMSCRNVVSWTAMIAGYAQNGKGYEALEVFREFSSYMMERPNHFMLASVINA 218

Query: 149 CAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAY 208
           CA LG L  G   +  + +   +L+ ++ +AL+DMYAKCGS   + +VF    +  V  Y
Sbjct: 219 CASLGRLVSGKVTHGAVIRGGYELNDVVASALVDMYAKCGSFLYSEKVFRRIRNPSVIPY 278

Query: 209 TSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD 268
           TS I G A  G    +  LFE M  + + P+ ++++ +L ACSH G V++G    +SM +
Sbjct: 279 TSMIVGAAKYGLGKLSLNLFEEMTDRKVMPNDVTFVGILHACSHSGLVDEGLRLLNSMHE 338

Query: 269 VHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDN--VIWGTLLGACRVHRNAEM 326
            HG+ P++ HY C+VD+L R G L+EA     S+ + P+   ++WGTLL + R+H   +M
Sbjct: 339 KHGVMPDVRHYTCVVDMLSRVGRLDEAYKLAKSIRVNPNEGALLWGTLLSSSRLHGRVDM 398

Query: 327 GQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDG 386
                  LIE +Q   G Y+ LSN Y    + ENA  +R  M    + + PGCS IE+  
Sbjct: 399 AVEASKWLIEYNQQVAGAYVTLSNTYTLAGEWENAHSLRTEMELVGVHKEPGCSWIEIKD 458

Query: 387 VVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYG-YNVETRSVMFDIEEEEKETVIGYHSE 445
            ++ F AGD S E+  E+     E+ +++   G     T  V  D+E+E KE ++G HSE
Sbjct: 459 SIYVFYAGDLSCERGDEVISLLRELERRMMERGCVGGSTGLVFVDVEQEVKEKIVGLHSE 518

Query: 446 KLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSC 505
           +LALAFGLI    G  IR++KN+RICSDCH A KL+SK+ +R   +RD   +HHF+DGSC
Sbjct: 519 RLALAFGLISIPKGVTIRVMKNLRICSDCHEAFKLISKIVERDFVVRDVNRFHHFKDGSC 578

Query: 506 SCLEYW 511
           +C ++W
Sbjct: 579 TCKDFW 584



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 84/181 (46%), Gaps = 18/181 (9%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V++  +  +  V ++L+  Y+ CG    +  VF    +  V+ + SMI G  + G     
Sbjct: 235 VIRGGYELNDVVASALVDMYAKCGSFLYSEKVFRRIRNPSVIPYTSMIVGAAKYGLGKLS 294

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV-----SWVVLIS 112
           L LF++M  R    NDV++  IL      G VD+  R+ N M ++  V      +  ++ 
Sbjct: 295 LNLFEEMTDRKVMPNDVTFVGILHACSHSGLVDEGLRLLNSMHEKHGVMPDVRHYTCVVD 354

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILV--SLLSACAQLGALDYG----NWVYSYIQ 166
             ++ GR  EA   ++  +S+ + PN   L+  +LLS+    G +D       W+  Y Q
Sbjct: 355 MLSRVGRLDEA---YKLAKSIRVNPNEGALLWGTLLSSSRLHGRVDMAVEASKWLIEYNQ 411

Query: 167 K 167
           +
Sbjct: 412 Q 412


>gi|115456187|ref|NP_001051694.1| Os03g0816600 [Oryza sativa Japonica Group]
 gi|113550165|dbj|BAF13608.1| Os03g0816600, partial [Oryza sativa Japonica Group]
          Length = 708

 Score =  364 bits (934), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 196/574 (34%), Positives = 306/574 (53%), Gaps = 70/574 (12%)

Query: 8   AYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDK 67
           A D F  N L+  Y+  G +  AR +F+     +V+SWN +  GY++NG++    KLFD+
Sbjct: 135 ATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFGGYIKNGDLGGARKLFDE 194

Query: 68  MPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPK-------------------------- 101
           MP+RN  +WN+++ GL   G  +++   F  M +                          
Sbjct: 195 MPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTG 254

Query: 102 RSLVSWVV-------------LISGFAQNGRPKEALALFREMQSLDLEPNSAIL------ 142
           R + ++VV             L   + + G  +E  A+ R + SL +   + I+      
Sbjct: 255 RQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQN 314

Query: 143 ----------------------VSLLSA---CAQLGALDYGNWVYSYIQKKCIKLDSILC 177
                                 V+ +SA   C+ L AL  G  ++  + K  +     + 
Sbjct: 315 GDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVM 374

Query: 178 AALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGIS 237
             L+ MY++CG +  + +VF  Y   D    ++ I     +GH  +A ELF+ M + G  
Sbjct: 375 TCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAE 434

Query: 238 PDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAEN 297
           P  ++++A+L ACSH G  E+G   F  M   +G++P + HY C+VDLLGR+G L+EAE 
Sbjct: 435 PSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEA 494

Query: 298 FIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLK 357
            I SMP+ PD VIW TLL AC+  +N +M +RI   +IE D +    Y+LLSNI   + +
Sbjct: 495 LILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIELDPHDSASYVLLSNIRATSRR 554

Query: 358 GENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKN 417
             +  EVRK MR   +++ PG S +EL G +H+F  GD SH + +EI +  EE++ KI+ 
Sbjct: 555 WGDVSEVRKAMRDNNVRKEPGVSWVELKGHIHQFCTGDESHPRQKEIDECLEEMMAKIRQ 614

Query: 418 YGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSA 477
            GY+ +   V+ D+E+EEKE  + +HSEKLA+AF  +    G  IR++KN+R+C DCH A
Sbjct: 615 CGYSPDMSMVLHDMEDEEKEVSLSHHSEKLAIAFAFLSLPEGVPIRVMKNLRVCDDCHLA 674

Query: 478 MKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           +KL+S+V  R+I +RD   +HHF+DG CSC +YW
Sbjct: 675 IKLMSQVTGREIVVRDVSRFHHFKDGRCSCRDYW 708


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  364 bits (934), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 202/545 (37%), Positives = 321/545 (58%), Gaps = 44/545 (8%)

Query: 10   DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVR-NGEILEGLKLFDKM 68
            DV V N+L+  Y+    + + + VF +  + D VSWNS I    +    +L+ LK F +M
Sbjct: 591  DVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGALAKYEASVLQALKYFLEM 650

Query: 69   PQR----NDVSWNSILGGLVRFG-----------------------------------SV 89
             Q     N V++ +IL  +  F                                     +
Sbjct: 651  MQAGWRPNRVTFINILAAVSSFSVLGLGHQIHALILKYSVADDNAIENALLAFYGKCEQM 710

Query: 90   DDACRVFNQMP-KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148
            +D   +F++M  +R  VSW  +ISG+  +G   +A+ L   M     + +     ++LSA
Sbjct: 711  EDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLVWPMMQRGQKLDGFTFATVLSA 770

Query: 149  CAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAY 208
            CA +  L+ G  V++   + C++ D ++ +AL+DMYAKCG ID A + F     +++ ++
Sbjct: 771  CASVATLERGMEVHACAVRACLESDVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSW 830

Query: 209  TSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD 268
             S I G A +GH  +A ++F  MK  G SPD ++++ VLSACSH+G V++G+ +F SM +
Sbjct: 831  NSMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVLSACSHVGLVDEGYKHFKSMGE 890

Query: 269  VHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA-CRVH-RNAEM 326
            V+G+ P ++H++CMVDLLGRAG +++ E+FI +MPM P+ +IW T+LGA CR + RN E+
Sbjct: 891  VYGLSPRIEHFSCMVDLLGRAGDVKKIEDFIKTMPMDPNILIWRTVLGACCRANGRNTEL 950

Query: 327  GQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDG 386
            GQR   MLIE +  +   Y+LLSN++      E+  E R  MRK  +K+  GCS + +  
Sbjct: 951  GQRAAKMLIELEPQNAVNYVLLSNMHAAGGNWEDVVEARLAMRKAAVKKDAGCSWVNMKD 1010

Query: 387  VVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEK 446
             VH F+AGD++H + ++IY+  +E++ KI++ GY  ET+  ++D+E E KE ++ YHSEK
Sbjct: 1011 GVHLFVAGDQTHPEKEKIYEKLKELMNKIRDAGYVPETKYALYDLELENKEELLSYHSEK 1070

Query: 447  LALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCS 506
            LA+AF ++  K    IRI+KN+R+C DCH+A K +SK+  R+I +RD   +HHF  G CS
Sbjct: 1071 LAIAF-VLTRKSELPIRIMKNLRVCGDCHTAFKYISKIVGRQIILRDSNRFHHFGGGMCS 1129

Query: 507  CLEYW 511
            C +YW
Sbjct: 1130 CGDYW 1134



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 106/360 (29%), Positives = 159/360 (44%), Gaps = 56/360 (15%)

Query: 10  DVFVKNSLIQFYSVC-GRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM 68
           D+ + N L+  YS C G + DA  VFDE    + V+WNS+I+ Y R G+ +   KLF  M
Sbjct: 277 DMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVM 336

Query: 69  PQRNDVSWN----------------------------------------------SILGG 82
            Q   V  N                                              +++ G
Sbjct: 337 -QMEGVELNLRPNEYTLCSLVTAACSLADCGLVLLEQMLTRIEKSGFLRDLYVGSALVNG 395

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             R+G +D A  +F QM  R+ V+   L+ G A+  + +EA  +F+EM+ L +E NS  L
Sbjct: 396 FARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDL-VEINSESL 454

Query: 143 VSLLSACAQLGALD----YGNWVYSYIQKKCIKLDSI-LCAALIDMYAKCGSIDLAMQVF 197
           V LLS   +   L      G  V++Y+ +  +    I +  AL++MY KC +ID A  VF
Sbjct: 455 VVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVF 514

Query: 198 HSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVE 257
                KD  ++ S I GL  N    EA   F  MK  G+ P + S I+ LS+CS LGW+ 
Sbjct: 515 QLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLT 574

Query: 258 KGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
            G       F   G+  ++     ++ L      + E +     MP + D V W + +GA
Sbjct: 575 LGRQIHGEGFK-WGLDLDVSVSNALLTLYAETDSINECQKVFFQMP-EYDQVSWNSFIGA 632



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 141/284 (49%), Gaps = 12/284 (4%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136
           N+++   VR G++  A ++F++MP+++LVSW  LISG+ QN  P EA +LF+ + S  L 
Sbjct: 179 NTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRMPDEACSLFKGVISSGLL 238

Query: 137 PNSAILVSLLSACAQLGA--LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC-GSIDLA 193
           PN   + S L AC Q G+  +  G  ++++I K     D IL   L+ MY+ C GSID A
Sbjct: 239 PNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILSNVLMSMYSDCSGSIDDA 298

Query: 194 MQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGIS----PDSISYIAVLSA 249
            +VF     ++   + S I      G ++ AF+LF  M+ +G+     P+  +  ++++A
Sbjct: 299 HRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVELNLRPNEYTLCSLVTA 358

Query: 250 CSHLGWVEKGFYYFHSMF---DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKP 306
              L   + G      M    +  G   +L   + +V+   R GL++ A+     M  + 
Sbjct: 359 ACSLA--DCGLVLLEQMLTRIEKSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQMYDRN 416

Query: 307 DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSN 350
              + G ++G  R H+  E  +    M    + N +   +LLS 
Sbjct: 417 AVTMNGLMVGLARQHQGEEAAKVFKEMKDLVEINSESLVVLLST 460



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 84/356 (23%), Positives = 163/356 (45%), Gaps = 45/356 (12%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           K+ F  D++V ++L+  ++  G +  A+ +F +  D + V+ N ++ G  R  +  E  K
Sbjct: 379 KSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAK 438

Query: 64  LFDKMPQRNDVSWNSIL----------------------------GGLV----------- 84
           +F +M    +++  S++                             GLV           
Sbjct: 439 VFKEMKDLVEINSESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALV 498

Query: 85  ----RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
               +  ++D+AC VF  MP +  VSW  +ISG   N R +EA++ F  M+   + P++ 
Sbjct: 499 NMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNF 558

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
            ++S LS+C+ LG L  G  ++    K  + LD  +  AL+ +YA+  SI+   +VF   
Sbjct: 559 SVISTLSSCSSLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQM 618

Query: 201 GDKDVSAYTSAIFGLAMNGHSI-EAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
            + D  ++ S I  LA    S+ +A + F  M   G  P+ +++I +L+A S    +  G
Sbjct: 619 PEYDQVSWNSFIGALAKYEASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLG 678

Query: 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
            +  H++   + +  +      ++   G+   +E+ E   + M  + D V W +++
Sbjct: 679 -HQIHALILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMI 733



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 94/368 (25%), Positives = 159/368 (43%), Gaps = 62/368 (16%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           K  F  DVF  N+LI  Y   G +  AR +FDE    ++VSW+ +I+GY +N    E   
Sbjct: 168 KTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRMPDEACS 227

Query: 64  LFD----------------------------------------KMPQRNDVSWNSILGGL 83
           LF                                         K+P  +D+  +++L  +
Sbjct: 228 LFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILSNVLMSM 287

Query: 84  VR--FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQ----SLDLEP 137
                GS+DDA RVF+++  R+ V+W  +IS + + G    A  LF  MQ     L+L P
Sbjct: 288 YSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVELNLRP 347

Query: 138 NSAILVSLLSACAQLG--ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ 195
           N   L SL++A   L    L     + + I+K     D  + +AL++ +A+ G +D A  
Sbjct: 348 NEYTLCSLVTAACSLADCGLVLLEQMLTRIEKSGFLRDLYVGSALVNGFARYGLMDCAKM 407

Query: 196 VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGW 255
           +F    D++       + GLA      EA ++F+ MK   +  +S S + +LS  +    
Sbjct: 408 IFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDL-VEINSESLVVLLSTFTEFSN 466

Query: 256 VEKG--------FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPD 307
           +++G         Y F S      +   +     +V++ G+   ++ A +    MP K D
Sbjct: 467 LKEGKRKGQEVHAYLFRSGL----VDARISIGNALVNMYGKCTAIDNACSVFQLMPSK-D 521

Query: 308 NVIWGTLL 315
            V W +++
Sbjct: 522 TVSWNSMI 529



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 133/305 (43%), Gaps = 33/305 (10%)

Query: 39  DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQ 98
           DLDV   N+++  Y     I E  K+F +MP+ + VSWNS +G L ++            
Sbjct: 589 DLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGALAKY------------ 636

Query: 99  MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
                                  +AL  F EM      PN    +++L+A +    L  G
Sbjct: 637 ------------------EASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLG 678

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD-KDVSAYTSAIFGLAM 217
           + +++ I K  +  D+ +  AL+  Y KC  ++    +F    + +D  ++ S I G   
Sbjct: 679 HQIHALILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLH 738

Query: 218 NGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELD 277
           +G   +A +L   M  +G   D  ++  VLSAC+ +  +E+G    H+      ++ ++ 
Sbjct: 739 SGILHKAMDLVWPMMQRGQKLDGFTFATVLSACASVATLERGM-EVHACAVRACLESDVV 797

Query: 278 HYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIES 337
             + +VD+  + G ++ A  F   MP++ +   W +++     H + +   +I   + + 
Sbjct: 798 VGSALVDMYAKCGKIDYASRFFELMPVR-NIYSWNSMISGYARHGHGQKALKIFTRMKQH 856

Query: 338 DQNHD 342
            Q+ D
Sbjct: 857 GQSPD 861



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 95/198 (47%), Gaps = 40/198 (20%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDE-SDDLDVVSWNSMINGYVRNGEIL 59
           +++K S A D  ++N+L+ FY  C ++ D   +F   S+  D VSWNSMI+GY+ +G + 
Sbjct: 684 LILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGILH 743

Query: 60  EGLKLFDKMPQR--------------------------------------NDVSWNSILG 81
           + + L   M QR                                      +DV   S L 
Sbjct: 744 KAMDLVWPMMQRGQKLDGFTFATVLSACASVATLERGMEVHACAVRACLESDVVVGSALV 803

Query: 82  GL-VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
            +  + G +D A R F  MP R++ SW  +ISG+A++G  ++AL +F  M+     P+  
Sbjct: 804 DMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGQKALKIFTRMKQHGQSPDHV 863

Query: 141 ILVSLLSACAQLGALDYG 158
             V +LSAC+ +G +D G
Sbjct: 864 TFVGVLSACSHVGLVDEG 881


>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
 gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
          Length = 805

 Score =  364 bits (934), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 202/547 (36%), Positives = 303/547 (55%), Gaps = 46/547 (8%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNG----- 56
           VV+ ++  ++ V NSLIQ Y   G  ++A  VF   +  DVVSW ++I+G V N      
Sbjct: 262 VVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGCVDNLLPDKA 321

Query: 57  -EILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVD------------------------- 90
            E  + +++   MP  ++V+  S+L      G +D                         
Sbjct: 322 LETYKTMEITGTMP--DEVTIASVLSACASLGQLDMGMKLHELAERTGHILYVVVANSLI 379

Query: 91  ----------DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
                      A  +F+Q+P + ++SW  +I+G   N R  EAL  FR+M  L  +PNS 
Sbjct: 380 DMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFEALIFFRKM-ILKSKPNSV 438

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
            L+S LSACA++GAL  G  ++++  K  +  D  L  A++D+Y +CG +  A+  F+  
Sbjct: 439 TLISALSACARVGALMCGKEIHAHALKAGMGFDGFLPNAILDLYVRCGRMRTALNQFN-L 497

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
            +KDV A+   + G A  G      ELF+ M    I+PD +++I++L ACS  G V +G 
Sbjct: 498 NEKDVGAWNILLTGYAQKGKGAMVMELFKRMVESEINPDDVTFISLLCACSRSGMVTEGL 557

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
            YF  M   + I P L HYAC+VDLLGRAG L EA  FI  MP+KPD  IWG LL ACR+
Sbjct: 558 EYFQRMKVNYHITPNLKHYACVVDLLGRAGKLNEAHEFIERMPIKPDPAIWGALLNACRI 617

Query: 321 HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS 380
           HR+  +G+     + + D    G YILL N+Y ++ K +   +VR+TM++  +   PGCS
Sbjct: 618 HRHVLLGELAAQHIFKQDAESIGYYILLCNLYADSGKWDEVAKVRRTMKEEGLIVDPGCS 677

Query: 381 LIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVI 440
            +E+ G VH FL+GD  H + QEI    E   +K+K  G+N +  S M  I+  + +   
Sbjct: 678 WVEVKGKVHAFLSGDNFHPQMQEINVVLEGFYEKMKTSGFNGQECSSMDGIQTSKADIFC 737

Query: 441 GYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF 500
           G HSE+ A+A+ LI + PG  I + KN+ +C  CHS +K +SK+ +R+IS+RD + +HHF
Sbjct: 738 G-HSERQAIAYSLINSAPGMPIWVTKNLYMCQSCHSTVKFISKIVRREISVRDTEQFHHF 796

Query: 501 EDGSCSC 507
           +DG CSC
Sbjct: 797 KDGLCSC 803



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 120/382 (31%), Positives = 180/382 (47%), Gaps = 47/382 (12%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VV+  F  DV V N+LI  Y  CG V  AR +FD+    D +SWN+MI+GY  N E LEG
Sbjct: 161 VVRFDFDMDVDVVNALITMYVKCGDVVSARMLFDKMPTRDRISWNAMISGYFENDECLEG 220

Query: 62  LKLFDKMPQR---------------------------------------NDVSWNSILGG 82
           L+LF +M +                                        N   +NS++  
Sbjct: 221 LELFFRMRELSIDPDLMTMTSVISACELLGDERLGTQLHSYVVRTAYDGNISVYNSLIQM 280

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
            +  G   +A  VF+ M  R +VSW  +ISG   N  P +AL  ++ M+     P+   +
Sbjct: 281 YLSVGHWKEAESVFSGMECRDVVSWTTIISGCVDNLLPDKALETYKTMEITGTMPDEVTI 340

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S+LSACA LG LD G  ++   ++    L  ++  +LIDMY+KC  I+ A+++FH   D
Sbjct: 341 ASVLSACASLGQLDMGMKLHELAERTGHILYVVVANSLIDMYSKCKRIEKALEIFHQIPD 400

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF-Y 261
           KDV ++TS I GL +N    EA   F  M  K   P+S++ I+ LSAC+ +G +  G   
Sbjct: 401 KDVISWTSVINGLRINNRCFEALIFFRKMILKS-KPNSVTLISALSACARVGALMCGKEI 459

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNV-IWGTLLGACRV 320
           + H++    G    L +   ++DL  R G +  A N      +   +V  W  LL     
Sbjct: 460 HAHALKAGMGFDGFLPN--AILDLYVRCGRMRTALN---QFNLNEKDVGAWNILLTGYAQ 514

Query: 321 HRNAEMGQRIGNMLIESDQNHD 342
                M   +   ++ES+ N D
Sbjct: 515 KGKGAMVMELFKRMVESEINPD 536



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 161/350 (46%), Gaps = 41/350 (11%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM-- 68
           V + N+L+  +   G V +A  VF    + D+ SWN ++ GY + G   E L L+ ++  
Sbjct: 69  VRLGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILW 128

Query: 69  -PQRNDV-SWNSIL----------------GGLVRF-------------------GSVDD 91
              R DV ++ S+L                  +VRF                   G V  
Sbjct: 129 AGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVS 188

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           A  +F++MP R  +SW  +ISG+ +N    E L LF  M+ L ++P+   + S++SAC  
Sbjct: 189 ARMLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACEL 248

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSA 211
           LG    G  ++SY+ +     +  +  +LI MY   G    A  VF     +DV ++T+ 
Sbjct: 249 LGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTI 308

Query: 212 IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG 271
           I G   N    +A E ++ M+  G  PD ++  +VLSAC+ LG ++ G    H + +  G
Sbjct: 309 ISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGM-KLHELAERTG 367

Query: 272 IKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
               +     ++D+  +   +E+A      +P K D + W +++   R++
Sbjct: 368 HILYVVVANSLIDMYSKCKRIEKALEIFHQIPDK-DVISWTSVINGLRIN 416


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Glycine max]
          Length = 1047

 Score =  364 bits (934), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 198/549 (36%), Positives = 310/549 (56%), Gaps = 39/549 (7%)

Query: 2    VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
            V+K  F ++V+V + LI  Y+  G++  A  +F    + DVVSW +MI GY ++ +  E 
Sbjct: 499  VLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEA 558

Query: 62   LKLFDKMPQR--------------------------------------NDVS-WNSILGG 82
            L LF +M  +                                      +D+S  N+++  
Sbjct: 559  LNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSVGNALVSL 618

Query: 83   LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
              R G V DA   F+++  +  +SW  LISGFAQ+G  +EAL+LF +M     E NS   
Sbjct: 619  YARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTF 678

Query: 143  VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
               +SA A +  +  G  +++ I K     ++ +   LI +YAKCG+ID A + F    +
Sbjct: 679  GPAVSAAANVANVKLGKQIHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPE 738

Query: 203  KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
            K+  ++ + + G + +GH  +A  LFE+MK  G+ P+ ++++ VLSACSH+G V++G  Y
Sbjct: 739  KNEISWNAMLTGYSQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKY 798

Query: 263  FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
            F SM +VHG+ P+ +HYAC+VDLLGR+GLL  A  F+  MP++PD ++  TLL AC VH+
Sbjct: 799  FQSMREVHGLVPKPEHYACVVDLLGRSGLLSRARRFVEEMPIQPDAMVCRTLLSACIVHK 858

Query: 323  NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
            N ++G+   + L+E +      Y+LLSN+Y  T K    +  R+ M+ R +K+ PG S I
Sbjct: 859  NIDIGEFAASHLLELEPKDSATYVLLSNMYAVTGKWGCRDRTRQMMKDRGVKKEPGRSWI 918

Query: 383  ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
            E++  VH F AGD+ H    +IY++  ++ +     GY  +T S++ D E  +K      
Sbjct: 919  EVNNSVHAFFAGDQKHPNVDKIYEYLRDLNELAAENGYIPQTNSLLNDAERRQKGPTQII 978

Query: 443  HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
            HSEKLA+AFGL+     + I + KN+R+C DCH+ +K VSK+  R I +RD   +HHF+ 
Sbjct: 979  HSEKLAIAFGLLSLSSSTPIHVFKNLRVCGDCHNWIKYVSKISDRVIVVRDSYRFHHFKG 1038

Query: 503  GSCSCLEYW 511
            G CSC +YW
Sbjct: 1039 GICSCKDYW 1047



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 163/354 (46%), Gaps = 41/354 (11%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V+K  F+ + +V N+L+  YS  G    A  VF+     D VS+NS+I+G  + G   +
Sbjct: 296 LVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDK 355

Query: 61  GLKLFDKM------PQ----------------------------RNDVSWNSILGG---- 82
            L+LF KM      P                             +  +S + IL G    
Sbjct: 356 ALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLD 415

Query: 83  -LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
             V+   +  A   F      ++V W V++  +       E+  +F +MQ   +EPN   
Sbjct: 416 LYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFT 475

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
             S+L  C+ L A+D G  +++ + K   + +  + + LIDMYAK G +D A+++F    
Sbjct: 476 YPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLK 535

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
           +KDV ++T+ I G A +    EA  LF+ M+ +GI  D+I + + +SAC+ +  + +G  
Sbjct: 536 EKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQG-Q 594

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
             H+   V G   +L     +V L  R G + +A  F        DN+ W +L+
Sbjct: 595 QIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAY-FAFDKIFSKDNISWNSLI 647



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/356 (27%), Positives = 170/356 (47%), Gaps = 42/356 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K  F  +V +   L+  Y   G +  A  VFDE     +  WN +++ +V        
Sbjct: 94  ILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRV 153

Query: 62  LKLFDKMPQR----NDVSWNSIL----GGLVRF--------------------------- 86
           L LF +M Q     ++ ++  +L    GG V F                           
Sbjct: 154 LGLFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLID 213

Query: 87  -----GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
                G ++ A +VF+ + KR  VSWV ++SG +Q+G  +EA+ LF +M +  + P   I
Sbjct: 214 LYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYI 273

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
             S+LSAC ++     G  ++  + K+   L++ +C AL+ +Y++ G+   A QVF++  
Sbjct: 274 FSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAML 333

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
            +D  +Y S I GL+  G+S +A ELF+ M    + PD ++  ++LSACS +G +  G  
Sbjct: 334 QRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVG-K 392

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
            FHS     G+  ++     ++DL  +   ++ A  F  S   + + V+W  +L A
Sbjct: 393 QFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETE-NVVLWNVMLVA 447



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/359 (28%), Positives = 164/359 (45%), Gaps = 41/359 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
            + + +   +FV N LI  Y   G +  A+ VFD     D VSW +M++G  ++G   E 
Sbjct: 196 TITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEA 255

Query: 62  LKLFDKMPQR----NDVSWNSILG---------------GLV------------------ 84
           + LF +M           ++S+L                GLV                  
Sbjct: 256 VLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTL 315

Query: 85  --RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             R G+   A +VFN M +R  VS+  LISG +Q G   +AL LF++M    L+P+   +
Sbjct: 316 YSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTV 375

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            SLLSAC+ +GAL  G   +SY  K  +  D IL  AL+D+Y KC  I  A + F S   
Sbjct: 376 ASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTET 435

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           ++V  +   +    +  +  E+F++F  M+ +GI P+  +Y ++L  CS L  V+ G   
Sbjct: 436 ENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLG-EQ 494

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            H+     G +  +   + ++D+  + G L+ A      +  K D V W  ++     H
Sbjct: 495 IHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEK-DVVSWTAMIAGYAQH 552



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 124/278 (44%), Gaps = 17/278 (6%)

Query: 48  MINGYVRNGEILEGLKLFDKMPQRN----DVSWNSILGGLVRFGSVDDACRVFNQMPKRS 103
           +++G + +G   +G KL  K+ +       V    ++   + FG +D A  VF++MP R 
Sbjct: 74  LLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRP 133

Query: 104 LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYS 163
           L  W  ++  F         L LFR M    ++P+      +L  C   G  D       
Sbjct: 134 LSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGC---GGGDVPFHCVE 190

Query: 164 YIQKKCI----KLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNG 219
            I  + I    +    +C  LID+Y K G ++ A +VF     +D  ++ + + GL+ +G
Sbjct: 191 KIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSG 250

Query: 220 HSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHY 279
              EA  LF  M + G+ P    + +VLSAC+ + + + G    H +    G    L+ Y
Sbjct: 251 CEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVG-EQLHGLVLKQGF--SLETY 307

Query: 280 AC--MVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
            C  +V L  R G    AE    +M ++ D V + +L+
Sbjct: 308 VCNALVTLYSRLGNFIPAEQVFNAM-LQRDEVSYNSLI 344



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 94/199 (47%), Gaps = 17/199 (8%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           M++K     +  V N LI  Y+ CG + DA   F E  + + +SWN+M+ GY ++G   +
Sbjct: 700 MIIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEISWNAMLTGYSQHGHGFK 759

Query: 61  GLKLFDKMPQ----RNDVSWNSILGGLVRFGSVDDACRVFNQM-------PKRSLVSWVV 109
            L LF+ M Q     N V++  +L      G VD+  + F  M       PK    + VV
Sbjct: 760 ALSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPKPEHYACVV 819

Query: 110 LISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC 169
            + G  ++G    A     EM    ++P++ +  +LLSAC     +D G +  S++ +  
Sbjct: 820 DLLG--RSGLLSRARRFVEEM---PIQPDAMVCRTLLSACIVHKNIDIGEFAASHLLELE 874

Query: 170 IKLDSILCAALIDMYAKCG 188
            K DS     L +MYA  G
Sbjct: 875 PK-DSATYVLLSNMYAVTG 892



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 75/190 (39%), Gaps = 9/190 (4%)

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
           M+   +  NS   + LL  C   G    G  ++  I K     + +LC  L+D+Y   G 
Sbjct: 59  MEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMDLYIAFGD 118

Query: 190 IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
           +D A+ VF     + +S +   +        +     LF  M  + + PD  +Y  VL  
Sbjct: 119 LDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRG 178

Query: 250 CS----HLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMK 305
           C         VEK     H+    HG +  L     ++DL  + G L  A+     +  K
Sbjct: 179 CGGGDVPFHCVEK----IHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGL-QK 233

Query: 306 PDNVIWGTLL 315
            D+V W  +L
Sbjct: 234 RDSVSWVAML 243


>gi|115476560|ref|NP_001061876.1| Os08g0434000 [Oryza sativa Japonica Group]
 gi|42407498|dbj|BAD10615.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|42409483|dbj|BAD09839.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113623845|dbj|BAF23790.1| Os08g0434000 [Oryza sativa Japonica Group]
          Length = 601

 Score =  364 bits (934), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 184/438 (42%), Positives = 263/438 (60%), Gaps = 3/438 (0%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD-- 134
            S++      G  D A +VF++MP R  ++W VLI+ + +N R K+AL LF  M+  +  
Sbjct: 164 TSLVSSYAACGDGDSARKVFDEMPVRDTIAWNVLITCYTRNRRTKDALKLFDAMRGGENG 223

Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
            EP+    + LL AC  LGALD+G  V+ Y        +  +  +LI MY KCG +D A 
Sbjct: 224 AEPDDVTCILLLQACTSLGALDFGEKVWEYAVDHGYGGELKVRNSLITMYTKCGCVDKAY 283

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
           QVF     K V  +++ I GLA NG   +A   FE M   G++PD  ++  VLSACSH G
Sbjct: 284 QVFCETPKKSVVTWSAMISGLASNGFGKDAISAFEEMGRSGVAPDEQTFTGVLSACSHSG 343

Query: 255 WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA-ENFIASMPMKPDNVIWGT 313
            V++GF +F  M   + +KP + HY CMVDL+GRAGLL++A E  +  M + PD  IW T
Sbjct: 344 LVDEGFKFFDIMCYEYQLKPNVHHYGCMVDLMGRAGLLDQAYELVVKDMRVAPDATIWRT 403

Query: 314 LLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKI 373
           LLGACR+H + ++G+R+ N LIE      G Y+LL N Y          EVRK M+++ I
Sbjct: 404 LLGACRIHGHIDLGERVINHLIELKAQQAGDYVLLLNTYAAVEDWGKVAEVRKLMKEKGI 463

Query: 374 KRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEE 433
           +  PGC+ +EL+G +HEF+A D SH +  EIY+  +EI K ++  GY     S + D++ 
Sbjct: 464 QTTPGCTTVELNGEIHEFIAADASHPRKAEIYEKLDEINKHLRIAGYVPNVSSELHDLDS 523

Query: 434 EEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRD 493
           E KE  + YHSEKLA+AF L+ T     IR+ KN+R+C DCH+  K+ S V+ R + +RD
Sbjct: 524 EGKECALAYHSEKLAIAFALLVTPQHRPIRLAKNLRVCVDCHNFTKVFSGVYHRLVIVRD 583

Query: 494 RKHYHHFEDGSCSCLEYW 511
           R  +HHF++  CSC +YW
Sbjct: 584 RTRFHHFKEFQCSCNDYW 601



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 107/240 (44%), Gaps = 48/240 (20%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VV    + D  +  SL+  Y+ CG    AR VFDE    D ++WN +I  Y RN    + 
Sbjct: 151 VVAEGHSPDALLATSLVSSYAACGDGDSARKVFDEMPVRDTIAWNVLITCYTRNRRTKDA 210

Query: 62  LKLFDKM------PQRNDVS--------------------W---------------NSIL 80
           LKLFD M       + +DV+                    W               NS++
Sbjct: 211 LKLFDAMRGGENGAEPDDVTCILLLQACTSLGALDFGEKVWEYAVDHGYGGELKVRNSLI 270

Query: 81  GGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
               + G VD A +VF + PK+S+V+W  +ISG A NG  K+A++ F EM    + P+  
Sbjct: 271 TMYTKCGCVDKAYQVFCETPKKSVVTWSAMISGLASNGFGKDAISAFEEMGRSGVAPDEQ 330

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKC----IKLDSILCAALIDMYAKCGSIDLAMQV 196
               +LSAC+  G +D G   + +    C    +K +      ++D+  + G +D A ++
Sbjct: 331 TFTGVLSACSHSGLVDEG---FKFFDIMCYEYQLKPNVHHYGCMVDLMGRAGLLDQAYEL 387


>gi|108711755|gb|ABF99550.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215697380|dbj|BAG91374.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 646

 Score =  364 bits (934), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 196/574 (34%), Positives = 306/574 (53%), Gaps = 70/574 (12%)

Query: 8   AYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDK 67
           A D F  N L+  Y+  G +  AR +F+     +V+SWN +  GY++NG++    KLFD+
Sbjct: 73  ATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFGGYIKNGDLGGARKLFDE 132

Query: 68  MPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPK-------------------------- 101
           MP+RN  +WN+++ GL   G  +++   F  M +                          
Sbjct: 133 MPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTG 192

Query: 102 RSLVSWVV-------------LISGFAQNGRPKEALALFREMQSLDLEPNSAIL------ 142
           R + ++VV             L   + + G  +E  A+ R + SL +   + I+      
Sbjct: 193 RQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQN 252

Query: 143 ----------------------VSLLSA---CAQLGALDYGNWVYSYIQKKCIKLDSILC 177
                                 V+ +SA   C+ L AL  G  ++  + K  +     + 
Sbjct: 253 GDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVM 312

Query: 178 AALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGIS 237
             L+ MY++CG +  + +VF  Y   D    ++ I     +GH  +A ELF+ M + G  
Sbjct: 313 TCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAE 372

Query: 238 PDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAEN 297
           P  ++++A+L ACSH G  E+G   F  M   +G++P + HY C+VDLLGR+G L+EAE 
Sbjct: 373 PSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEA 432

Query: 298 FIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLK 357
            I SMP+ PD VIW TLL AC+  +N +M +RI   +IE D +    Y+LLSNI   + +
Sbjct: 433 LILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIELDPHDSASYVLLSNIRATSRR 492

Query: 358 GENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKN 417
             +  EVRK MR   +++ PG S +EL G +H+F  GD SH + +EI +  EE++ KI+ 
Sbjct: 493 WGDVSEVRKAMRDNNVRKEPGVSWVELKGHIHQFCTGDESHPRQKEIDECLEEMMAKIRQ 552

Query: 418 YGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSA 477
            GY+ +   V+ D+E+EEKE  + +HSEKLA+AF  +    G  IR++KN+R+C DCH A
Sbjct: 553 CGYSPDMSMVLHDMEDEEKEVSLSHHSEKLAIAFAFLSLPEGVPIRVMKNLRVCDDCHLA 612

Query: 478 MKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           +KL+S+V  R+I +RD   +HHF+DG CSC +YW
Sbjct: 613 IKLMSQVTGREIVVRDVSRFHHFKDGRCSCRDYW 646


>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
          Length = 1072

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 191/538 (35%), Positives = 301/538 (55%), Gaps = 39/538 (7%)

Query: 12   FVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQR 71
            F+  +L++ Y+  G +RD   VF+   +  ++SWN++I+ + RNG+  E L LF +M  +
Sbjct: 536  FLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQ 595

Query: 72   --------------------------------------NDVSWNSILGGLVRFGSVDDAC 93
                                                  ND   N+++    + G V  A 
Sbjct: 596  GLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFNDFVQNALIDMYAKCGFVHSAN 655

Query: 94   RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153
            ++F ++ ++SLV+W  +I GF+QNG   EA+ LF +M    ++ +    +S++ AC+ LG
Sbjct: 656  KMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLG 715

Query: 154  ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIF 213
             L+ G WV+  +    ++ DS L  AL DMY+KCG + +A  VF    ++ + +++  I 
Sbjct: 716  YLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIA 775

Query: 214  GLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIK 273
            G  M+G       LF  M   GI P+ I+++ +LSACSH G VE+G  YF+SM +  G++
Sbjct: 776  GYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSMSEF-GVE 834

Query: 274  PELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNM 333
            P+ DH+ACMVDLL RAG L  A   I S+P   ++ IWG LL  CR+H+  ++ + I   
Sbjct: 835  PKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIHKRIDIIKSIEKN 894

Query: 334  LIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLA 393
            L++ D    G Y LLSNIY E    +   +VR  M+ + +++ PG S IE+D  ++ F  
Sbjct: 895  LLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEIDKKIYRFGP 954

Query: 394  GDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGL 453
            GD SH +T++IY+F E     +    Y+ E  + +    +  KE  +  HSEKLA+AFG+
Sbjct: 955  GDTSHSQTKDIYRFLENFRSLVHAQVYDSEPDNSIVGTSKFNKENNVVSHSEKLAIAFGI 1014

Query: 454  ICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            I T+PG+ +RI KN+R+C DCHS  K+ SK+  R+I +RD   +H F +GSCSC +YW
Sbjct: 1015 INTRPGTTLRISKNLRVCRDCHSFAKIASKITGREIIMRDLNRFHCFRNGSCSCNDYW 1072



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 84/271 (30%), Positives = 144/271 (53%), Gaps = 3/271 (1%)

Query: 51  GYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVL 110
           G V+ G  + G  +   M    D    +++      G++ D  +VF  + +++++SW  L
Sbjct: 513 GRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTL 572

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCI 170
           IS F +NG+P+EAL LF +MQ+  L P+S  L S LSAC  +     G  ++ YI K   
Sbjct: 573 ISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTG- 631

Query: 171 KLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFEN 230
             +  +  ALIDMYAKCG +  A ++F    +K +  + S I G + NG+S+EA  LF+ 
Sbjct: 632 NFNDFVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQ 691

Query: 231 MKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAG 290
           M    +  D +++++V+ ACSHLG++EKG +  H +  ++G++ +      + D+  + G
Sbjct: 692 MYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLI-MYGLRKDSYLDTALTDMYSKCG 750

Query: 291 LLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            L+ A      M  +   V W  ++    +H
Sbjct: 751 ELQMAHGVFDRMSER-SIVSWSVMIAGYGMH 780



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 122/250 (48%), Gaps = 43/250 (17%)

Query: 9   YDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM 68
           ++ FV+N+LI  Y+ CG V  A  +F++  +  +V+WNSMI G+ +NG  +E + LFD+M
Sbjct: 633 FNDFVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQM 692

Query: 69  PQ--------------------------------------RNDVSWNSILGGLV-RFGSV 89
                                                   R D   ++ L  +  + G +
Sbjct: 693 YMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGEL 752

Query: 90  DDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
             A  VF++M +RS+VSW V+I+G+  +G+    ++LF +M    ++PN    + +LSAC
Sbjct: 753 QMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSAC 812

Query: 150 AQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYT 209
           +  GA++ G   ++ + +  ++      A ++D+ ++ G ++ A Q+  S          
Sbjct: 813 SHAGAVEEGKLYFNSMSEFGVEPKHDHFACMVDLLSRAGDLNGAYQIITSL----PFPAN 868

Query: 210 SAIFGLAMNG 219
           S+I+G  +NG
Sbjct: 869 SSIWGALLNG 878



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 142/313 (45%), Gaps = 39/313 (12%)

Query: 17  LIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSW 76
           LI+ Y+  G    ++ VFD     D   W  +I  YV  G   E + L+ +M  ++    
Sbjct: 386 LIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQI 445

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136
           ++ +     F SV  AC  F  +            S   +NG+  E L +F +M S  +E
Sbjct: 446 SNFV-----FPSVLKACSGFGDL------------SVGGKNGQASEGLDMFSQMISEAVE 488

Query: 137 PNSAILVSLLSACAQLGALDYGNW--------VYSYIQKKCIKLD-SILCAALIDMYAKC 187
           P+S  ++S+  AC++LG+L  G          V+ ++ ++ +  +   L  AL+++YA  
Sbjct: 489 PDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADT 548

Query: 188 GSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVL 247
           G++    +VF +  +K + ++ + I     NG   EA  LF  M+++G+ PDS S  + L
Sbjct: 549 GNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSL 608

Query: 248 SACSHLGWVEKGFYYFHSMFDVHGIKPELDHY-----ACMVDLLGRAGLLEEAENFIASM 302
           SAC  + + + G         +HG   +  ++       ++D+  + G +  A      +
Sbjct: 609 SACGTISFSQLG-------AQIHGYIIKTGNFNDFVQNALIDMYAKCGFVHSANKMFEKI 661

Query: 303 PMKPDNVIWGTLL 315
             K   V W +++
Sbjct: 662 KEK-SLVTWNSMI 673


>gi|125547017|gb|EAY92839.1| hypothetical protein OsI_14639 [Oryza sativa Indica Group]
          Length = 702

 Score =  363 bits (933), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 198/554 (35%), Positives = 298/554 (53%), Gaps = 47/554 (8%)

Query: 5   NSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDL--DVVSWNSMINGYVRNGEILEGL 62
           +  A + FV ++L+  Y+   +V  AR VFD   D    +  WN+MI GY + G   E L
Sbjct: 149 DELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEAL 208

Query: 63  KLFDKMPQR----------------------------------------NDVSWNSILGG 82
           +LF +M                                           N    N+++  
Sbjct: 209 RLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDM 268

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD---LEPNS 139
             R G  D A R+F  +    +VSW  LI+G    G   +A  L REMQ L+   + PN+
Sbjct: 269 YARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNA 328

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
             L++LL  CA L A   G  ++ Y  +  +  D  + +AL+DMYAKCG + L+  VF  
Sbjct: 329 ITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDR 388

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG-ISPDSISYIAVLSACSHLGWVEK 258
              ++   +   I    M+G   EA  LF+ M + G   P+ ++++A L+ACSH G V++
Sbjct: 389 LPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDR 448

Query: 259 GFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNV-IWGTLLGA 317
           G   FH+M   HG++P  D  AC+VD+LGRAG L+EA   + SM      V  W T+LGA
Sbjct: 449 GLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAWSTMLGA 508

Query: 318 CRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAP 377
           CR+HRN  +G+  G  L+E +      Y+LL NIY    +   A EVR  MR+R + + P
Sbjct: 509 CRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEP 568

Query: 378 GCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKE 437
           GCS IE+DG +H F+AG+ +H  ++E++   E +  ++   GY  +T  V+ D+++ +K 
Sbjct: 569 GCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDMDDGDKA 628

Query: 438 TVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHY 497
            V+  HSEKLA+AFGL+   PG+ IR+ KN+R+C+DCH A K +SK+  R+I +RD + +
Sbjct: 629 AVLRCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRF 688

Query: 498 HHFEDGSCSCLEYW 511
           HHF +G CSC +YW
Sbjct: 689 HHFRNGQCSCGDYW 702



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 119/253 (47%), Gaps = 8/253 (3%)

Query: 75  SWNSILGGLVRFGSVDDACRVF-NQMPKRS-LVSWVVLISGFAQNGRPKEALALFREMQS 132
           ++N++L    R G V DA R+F    P R  +V+W  ++S   Q+G   EA+    +M +
Sbjct: 53  AFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVA 112

Query: 133 LDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC-IKLDSILCAALIDMYAKCGSID 191
           L + P+     S L AC++L  LD G  +++Y+ K   +  +S + +AL+DMYA    + 
Sbjct: 113 LGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVG 172

Query: 192 LAMQVFHSYGD--KDVSAYTSAIFGLAMNGHSIEAFELFENMKSK-GISPDSISYIAVLS 248
            A QVF    D  K +  + + I G A  G   EA  LF  M+++ G  P   +  +VL 
Sbjct: 173 KARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLP 232

Query: 249 ACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDN 308
           AC+       G    H      G+         ++D+  R G  + A    A + + PD 
Sbjct: 233 ACAR-SEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDL-PDV 290

Query: 309 VIWGTLLGACRVH 321
           V W TL+  C V 
Sbjct: 291 VSWNTLITGCVVQ 303



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 119/257 (46%), Gaps = 46/257 (17%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VVK   A + FV+N+L+  Y+  G+   AR +F   D  DVVSWN++I G V  G + + 
Sbjct: 250 VVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADA 309

Query: 62  LKLFDKMPQ-------RNDVSWNSILGGL------------------------------- 83
            +L  +M Q        N ++  ++L G                                
Sbjct: 310 FQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSAL 369

Query: 84  ----VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQ-SLDLEPN 138
                + G +  +  VF+++P+R+ ++W VLI  +  +G   EA  LF  M  S +  PN
Sbjct: 370 VDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPN 429

Query: 139 SAILVSLLSACAQLGALDYGNWVYSYIQK-KCIKLDSILCAALIDMYAKCGSIDLAMQVF 197
               ++ L+AC+  G +D G  ++  +++   ++    + A ++D+  + G +D A  + 
Sbjct: 430 EVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMV 489

Query: 198 HSY--GDKDVSAYTSAI 212
            S   G++ VSA+++ +
Sbjct: 490 TSMEAGEQQVSAWSTML 506


>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
 gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
          Length = 650

 Score =  363 bits (933), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 202/557 (36%), Positives = 319/557 (57%), Gaps = 49/557 (8%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++N F  D F+   LI  YS    + +AR VFD++ +  +  +N++       G   E 
Sbjct: 96  LLENGFDQDPFLATKLINMYSFFDSIDNARKVFDKTRNRTIYVYNALFRALSLAGHGEEV 155

Query: 62  LKLFDKMPQ----RNDVSWNSILGGLV--------------------------------- 84
           L ++ +M       +  ++  +L   V                                 
Sbjct: 156 LNMYRRMNSIGIPSDRFTYTYVLKACVASECFVSLLNKGREIHAHILRHGYDGYVHIMTT 215

Query: 85  ------RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM--QSLDLE 136
                 +FG V +A  VFNQMP +++VSW  +I+ +A+NG+  EAL LFRE+  ++ DL 
Sbjct: 216 LVDMYAKFGCVSNASCVFNQMPVKNVVSWSAMIACYAKNGKAFEALELFRELMLETQDLC 275

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSIL--CAALIDMYAKCGSIDLAM 194
           PNS  +VS+L ACA L AL+ G  ++ YI +K   LDSIL   +AL+ MYA+CG ++L  
Sbjct: 276 PNSVTMVSVLQACAALAALEQGRLIHGYILRK--GLDSILPVISALVTMYARCGKLELGQ 333

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
           +VF     +DV ++ S I    ++G   +A  +FE M   G+ P  IS+++VL ACSH G
Sbjct: 334 RVFDQMDKRDVVSWNSLISSYGVHGFGKKAIGIFEEMTYNGVEPSPISFVSVLGACSHAG 393

Query: 255 WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTL 314
            V++G   F+SM   HGI P ++HYACMVDLLGRA  LEEA   I +M ++P   +WG+L
Sbjct: 394 LVDEGKMLFNSMHVAHGICPSVEHYACMVDLLGRANRLEEAAKIIENMRIEPGPKVWGSL 453

Query: 315 LGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIK 374
           LG+CR+H N E+ +R    L + +  + G Y+LL++IY E    +  + V+K +  R ++
Sbjct: 454 LGSCRIHCNVELAERASIRLFDLEPTNAGNYVLLADIYAEAGMWDGVKRVKKLLEARGLQ 513

Query: 375 RAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEE 434
           + PG S IE+   ++ F++ D  + + ++++    ++  ++K  GY  +T+ V++D++  
Sbjct: 514 KVPGRSWIEVKRKIYSFVSVDEVNPRMEQLHALLVKLSMELKEEGYVPQTKVVLYDLKAA 573

Query: 435 EKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDR 494
           EKE ++  HSEKLA+AFGLI +  G VIRI K++R+C DCHS  K +SK   ++I +RD 
Sbjct: 574 EKERIVLGHSEKLAVAFGLINSSKGEVIRITKSLRLCEDCHSFTKFISKFANKEILVRDV 633

Query: 495 KHYHHFEDGSCSCLEYW 511
             +HHF DG CSC +YW
Sbjct: 634 NRFHHFRDGVCSCGDYW 650



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 92/215 (42%), Gaps = 15/215 (6%)

Query: 110 LISGFAQNGRPKEALALFREMQSLDLEPNSA--ILVSLLSACAQLGALDYGNWVYSYIQK 167
           LI    + G   +AL L      L LEPN A      L+ +C    +L     V+ ++ +
Sbjct: 45  LIQSLCKQGNLTQALEL------LSLEPNPAQHTYELLILSCTHQNSLLDAQRVHRHLLE 98

Query: 168 KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFEL 227
                D  L   LI+MY+   SID A +VF    ++ +  Y +    L++ GH  E   +
Sbjct: 99  NGFDQDPFLATKLINMYSFFDSIDNARKVFDKTRNRTIYVYNALFRALSLAGHGEEVLNM 158

Query: 228 FENMKSKGISPDSISYIAVLSAC----SHLGWVEKGFYYFHSMFDVHGIKPELDHYACMV 283
           +  M S GI  D  +Y  VL AC      +  + KG    H+    HG    +     +V
Sbjct: 159 YRRMNSIGIPSDRFTYTYVLKACVASECFVSLLNKG-REIHAHILRHGYDGYVHIMTTLV 217

Query: 284 DLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
           D+  + G +  A      MP+K  NV+  + + AC
Sbjct: 218 DMYAKFGCVSNASCVFNQMPVK--NVVSWSAMIAC 250


>gi|225450911|ref|XP_002280644.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14330
           [Vitis vinifera]
 gi|296088358|emb|CBI36803.3| unnamed protein product [Vitis vinifera]
          Length = 652

 Score =  363 bits (933), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 200/542 (36%), Positives = 299/542 (55%), Gaps = 43/542 (7%)

Query: 13  VKNSLIQFYSVCGRVRDARWVF-DESDDLDVVS--WNSMINGYVRNGEILEGLKLFDKM- 68
           +K  LI  +SVC RV +AR VF D  +D+D+    W +M  GY RNG   E L L+ +M 
Sbjct: 111 LKGKLITLFSVCRRVDEARRVFEDGGEDVDLPESVWVAMGIGYSRNGYPKEALLLYYEMV 170

Query: 69  --------------------------------------PQRNDVSWNSILGGLVRFGSVD 90
                                                    + V  N++L      G  D
Sbjct: 171 CQFGQLGNFAFSMALKACSDLGDLQTGRAVHAQVLKATEDPDQVVNNALLRLYSEDGCFD 230

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           +A RVF+ MP R++VSW  LI+G  +     EA+  FR MQ   +  +   L ++L  CA
Sbjct: 231 EALRVFDGMPHRNVVSWNSLIAGLVKKDGVFEAIEAFRIMQGKGMGFSWVTLTTILPVCA 290

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
           ++ AL  G  +++ I K   K D+ +  +L+DMYAKCG++D   +VF+    KD++++ +
Sbjct: 291 RVTALGSGKEIHAVIVKSTAKPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGKDLTSWNT 350

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I G A+NG   EA E F+ M   G SPD I++IA+LS CSH G  + G   F  M   +
Sbjct: 351 LITGYAINGRMTEAMESFQEMICSGFSPDGITFIALLSGCSHAGLADDGCRLFEMMKMDY 410

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
           GI P ++HYAC+VD+LGRAG ++EA   + +MP KP   IWG+LL +CR+H N  + + +
Sbjct: 411 GISPTVEHYACLVDVLGRAGRIKEALEIVKNMPFKPTGSIWGSLLNSCRLHGNVPLAEAV 470

Query: 331 GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHE 390
              L E + N+ G Y++LSNIY      E+ + VR+ M KR + +  GCS +++   +H 
Sbjct: 471 AKRLFELEPNNAGNYVMLSNIYANAGMWESVKVVREFMEKRGMTKEAGCSWLQIKSKIHT 530

Query: 391 FLAGDRSH-EKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLAL 449
           F+AG  +    + E  + W+ +++ ++  GY  +T  V+ D+ EE +   +  HSE+LA 
Sbjct: 531 FVAGGSNEFRNSVEYKKVWKRLMEAMEEVGYVPDTGVVLHDVSEEMRAMWVCGHSERLAT 590

Query: 450 AFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLE 509
            F LI T  G  IRI KN+R+C DCHS +K +SKV  R I +RD   +HHF+DG CSC +
Sbjct: 591 MFALINTASGMPIRITKNLRVCVDCHSWVKTLSKVTGRVIVLRDTNRFHHFKDGVCSCKD 650

Query: 510 YW 511
           YW
Sbjct: 651 YW 652



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 112/257 (43%), Gaps = 44/257 (17%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K +   D  V N+L++ YS  G   +A  VFD     +VVSWNS+I G V+   + E 
Sbjct: 204 VLKATEDPDQVVNNALLRLYSEDGCFDEALRVFDGMPHRNVVSWNSLIAGLVKKDGVFEA 263

Query: 62  LKLFDKMPQRN-DVSW--------------------------------------NSILGG 82
           ++ F  M  +    SW                                      NS++  
Sbjct: 264 IEAFRIMQGKGMGFSWVTLTTILPVCARVTALGSGKEIHAVIVKSTAKPDAPVLNSLVDM 323

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G++D   RVFN M  + L SW  LI+G+A NGR  EA+  F+EM      P+    
Sbjct: 324 YAKCGAMDYCRRVFNGMQGKDLTSWNTLITGYAINGRMTEAMESFQEMICSGFSPDGITF 383

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKK-CIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           ++LLS C+  G  D G  ++  ++    I       A L+D+  + G I  A+++  +  
Sbjct: 384 IALLSGCSHAGLADDGCRLFEMMKMDYGISPTVEHYACLVDVLGRAGRIKEALEIVKNMP 443

Query: 202 DKDVSAYTSAIFGLAMN 218
            K     T +I+G  +N
Sbjct: 444 FKP----TGSIWGSLLN 456



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 81/158 (51%), Gaps = 12/158 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++VK++   D  V NSL+  Y+ CG +   R VF+     D+ SWN++I GY  NG + E
Sbjct: 304 VIVKSTAKPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGKDLTSWNTLITGYAINGRMTE 363

Query: 61  GLKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVV-----LI 111
            ++ F +M       + +++ ++L G    G  DD CR+F  M     +S  V     L+
Sbjct: 364 AMESFQEMICSGFSPDGITFIALLSGCSHAGLADDGCRLFEMMKMDYGISPTVEHYACLV 423

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
               + GR KEAL + + M     +P  +I  SLL++C
Sbjct: 424 DVLGRAGRIKEALEIVKNMP---FKPTGSIWGSLLNSC 458


>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  363 bits (933), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 182/456 (39%), Positives = 278/456 (60%), Gaps = 33/456 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRV--------------RD------------------ 29
           V K  F  D+FV NSLI  YS CG +              +D                  
Sbjct: 147 VEKYGFFGDLFVPNSLIDSYSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLG 206

Query: 30  -ARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGS 88
            AR +FDE  + D VSWN++++GYV+ GE+ +   LF+KMP+RN VSW++++ G  + G 
Sbjct: 207 RARKLFDEMAERDAVSWNTILDGYVKAGEMSQAFNLFEKMPERNVVSWSTMVSGYCKTGD 266

Query: 89  VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148
           ++ A  +F++MP ++LV+W ++ISGFA+ G  KEA  L+ +M++  L+P+   L+S+L+A
Sbjct: 267 MEMARMLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILAA 326

Query: 149 CAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAY 208
           CA+ G L  G  V++ I+K  IK    +  AL+DMYAKCG +D A+ +F+    +D+ ++
Sbjct: 327 CAESGLLVLGKKVHASIKKIRIKCSVNVSNALVDMYAKCGRVDKALSIFNEMSMRDLVSW 386

Query: 209 TSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD 268
              + GLAM+GH  +A +LF  M+ +G  PD ++ IA+L AC+H G+V++G  YF+SM  
Sbjct: 387 NCMLQGLAMHGHGEKAIQLFSKMQQEGFKPDKVTLIAILCACTHAGFVDQGLSYFNSMER 446

Query: 269 VHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQ 328
            HGI P ++HY CM+DLLGR G LEEA   + SMPM+P++VIWGTLLGACRVH    + +
Sbjct: 447 DHGIVPHIEHYGCMIDLLGRGGRLEEAFRLVQSMPMEPNDVIWGTLLGACRVHNAVPLAE 506

Query: 329 RIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVV 388
           ++ + LI  +Q+  G Y +LSNI+       +   +R  M+   +++  G S IELD  V
Sbjct: 507 KVLDRLITLEQSDPGNYSMLSNIFAAAGDWNSVANMRLQMKSTGVQKPSGASSIELDDEV 566

Query: 389 HEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVET 424
           HEF   D+SH +T +IYQ   ++ + +K   Y  E 
Sbjct: 567 HEFTVFDKSHPETDKIYQILVKLGQDLKQVAYAPEA 602



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 160/365 (43%), Gaps = 51/365 (13%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K +   D++V   LI  +S+C ++  A  VF++  D +V  +N++I  +V+N + L+ 
Sbjct: 46  IIKRNLHNDLYVAPKLISAFSLCHQMNLAVNVFNQIQDPNVHLYNTLIRAHVQNSQSLKA 105

Query: 62  LKLFDKMPQR----------------NDVSW-----------------------NSILGG 82
              F  M +                 N   W                       NS++  
Sbjct: 106 FATFFDMQKNGLFADNFTYPFLLKACNGKGWLPTVQMIHCHVEKYGFFGDLFVPNSLIDS 165

Query: 83  LVRFG--SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
             + G   V+ A ++F +M ++ LVSW  +I G  + G    A  LF EM   D    + 
Sbjct: 166 YSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRARKLFDEMAERDAVSWNT 225

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
           IL   + A     A +        + +K  + + +  + ++  Y K G +++A  +F   
Sbjct: 226 ILDGYVKAGEMSQAFN--------LFEKMPERNVVSWSTMVSGYCKTGDMEMARMLFDKM 277

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
             K++  +T  I G A  G + EA  L+  M++ G+ PD  + I++L+AC+  G +  G 
Sbjct: 278 PFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILAACAESGLLVLGK 337

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
               S+  +  IK  ++    +VD+  + G +++A +    M M+ D V W  +L    +
Sbjct: 338 KVHASIKKIR-IKCSVNVSNALVDMYAKCGRVDKALSIFNEMSMR-DLVSWNCMLQGLAM 395

Query: 321 HRNAE 325
           H + E
Sbjct: 396 HGHGE 400



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 77/160 (48%), Gaps = 6/160 (3%)

Query: 161 VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGH 220
           V++ I K+ +  D  +   LI  ++ C  ++LA+ VF+   D +V  Y + I     N  
Sbjct: 42  VHAQIIKRNLHNDLYVAPKLISAFSLCHQMNLAVNVFNQIQDPNVHLYNTLIRAHVQNSQ 101

Query: 221 SIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA 280
           S++AF  F +M+  G+  D+ +Y  +L AC+  GW+       H   + +G   +L    
Sbjct: 102 SLKAFATFFDMQKNGLFADNFTYPFLLKACNGKGWLPT-VQMIHCHVEKYGFFGDLFVPN 160

Query: 281 CMVDLLGRAGLLEEAENFIASMPM---KPDNVIWGTLLGA 317
            ++D   + GLL    N+   + M   + D V W +++G 
Sbjct: 161 SLIDSYSKCGLL--GVNYAMKLFMEMGEKDLVSWNSMIGG 198


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 198/556 (35%), Positives = 311/556 (55%), Gaps = 45/556 (8%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           M VK+ F +   V N+ I  YS CGR+  A  VF++    ++VSWN+MI G+   G   +
Sbjct: 130 MCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRK 189

Query: 61  GLKLFDKMPQRNDV--------------SWNSILGGL----------------------- 83
            L LF +M  + +V              +  +I GG                        
Sbjct: 190 SLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRNIIASAI 249

Query: 84  ----VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS 139
                + G + +A +VF+++ +++L+SW  LI GFAQ G   EA+ LFR+++      + 
Sbjct: 250 VDLYAKCGYLFEAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQLRESVSNVDG 309

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
            +L  ++   A L  ++ G  ++ YI K    LD  +  ++IDMY KCG  + A ++F  
Sbjct: 310 FVLSIMMGVFADLALVEQGKQMHCYILKVPSGLDISVANSIIDMYLKCGLTEEAERLFSE 369

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
              ++V ++T  I G   +G   +A  LF  M+  GI  D ++Y+A+LSACSH G + + 
Sbjct: 370 MQVRNVVSWTVMITGYGKHGLGEKAIHLFNRMQLDGIELDEVAYLALLSACSHSGLIRES 429

Query: 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACR 319
             YF  + + H +KP ++HYACMVD+LGRAG L+EA+N I +M +KP+  IW TLL ACR
Sbjct: 430 QEYFSRLCNNHQMKPNIEHYACMVDILGRAGQLKEAKNLIENMKLKPNEGIWQTLLSACR 489

Query: 320 VHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGC 379
           VH N E+G+ +G +L   D ++   Y+++SNIY E    +  E VRK ++ + +K+  G 
Sbjct: 490 VHGNLEIGREVGEILFRMDTDNPVNYVMMSNIYAEAGYWKECERVRKLVKAKGLKKEAGQ 549

Query: 380 SLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIK-NYGYNVETRSVMFDIEEEEKET 438
           S +E++  +H F  GD +H  T++I++  +E+ +++K   GY    R  + D+EEE KE 
Sbjct: 550 SWVEINKEIHFFYGGDDTHPLTEKIHEMLKEMERRVKEEVGYAYGLRFALHDVEEESKEE 609

Query: 439 VIGYHSEKLALAFGLIC---TKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRK 495
            +  HSEKLA+   L+C    K G VIR+ KN+R+C DCH  +K +SK+ K+   +RD  
Sbjct: 610 NLRVHSEKLAIGLALVCDGMEKKGGVIRVFKNLRVCGDCHEFIKGLSKILKKVFVVRDAN 669

Query: 496 HYHHFEDGSCSCLEYW 511
            +H FEDG CSC +YW
Sbjct: 670 RFHRFEDGLCSCGDYW 685



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 166/354 (46%), Gaps = 44/354 (12%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           V   F +D+ + N LI  Y  C RV  A  VFD   + +VVSW +++ GY++ G     L
Sbjct: 31  VNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRMLERNVVSWTALMCGYLQEGNAKGSL 90

Query: 63  KLFDKM------PQ----------------------------RNDVSWNSILGGLV---- 84
            L  +M      P                             ++   W S++G       
Sbjct: 91  ALLCEMGYSGVKPNEFTFSTSLKACGALGVVENGMQIHGMCVKSGFEWVSVVGNATIDMY 150

Query: 85  -RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
            + G +  A +VFN+MP R+LVSW  +I+G    G  +++L LF+ MQ     P+     
Sbjct: 151 SKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQGEVPDEFTFT 210

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKC--IKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           S L AC  LGA+  G  +++ +  +   I + +I+ +A++D+YAKCG +  A +VF    
Sbjct: 211 STLKACGALGAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAKCGYLFEAQKVFDRIE 270

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
            K++ ++++ I G A  G+ +EA +LF  ++    + D      ++   + L  VE+G  
Sbjct: 271 QKNLISWSALIQGFAQEGNLLEAMDLFRQLRESVSNVDGFVLSIMMGVFADLALVEQGKQ 330

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
               +  V     ++     ++D+  + GL EEAE   + M ++  NV+  T++
Sbjct: 331 MHCYILKVPS-GLDISVANSIIDMYLKCGLTEEAERLFSEMQVR--NVVSWTVM 381



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/257 (30%), Positives = 128/257 (49%), Gaps = 4/257 (1%)

Query: 89  VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148
           VD AC VF++M +R++VSW  L+ G+ Q G  K +LAL  EM    ++PN     + L A
Sbjct: 55  VDLACSVFDRMLERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKA 114

Query: 149 CAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAY 208
           C  LG ++ G  ++    K   +  S++  A IDMY+KCG I +A QVF+    +++ ++
Sbjct: 115 CGALGVVENGMQIHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSW 174

Query: 209 TSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD 268
            + I G    G+  ++  LF+ M+ +G  PD  ++ + L AC  LG + +G    H+   
Sbjct: 175 NAMIAGHTHEGNGRKSLVLFQRMQGQGEVPDEFTFTSTLKACGALGAI-RGGTQIHASLI 233

Query: 269 VHGIKPELDHY--ACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEM 326
             G    + +   + +VDL  + G L EA+     +  K + + W  L+       N   
Sbjct: 234 TRGFPISIRNIIASAIVDLYAKCGYLFEAQKVFDRIEQK-NLISWSALIQGFAQEGNLLE 292

Query: 327 GQRIGNMLIESDQNHDG 343
              +   L ES  N DG
Sbjct: 293 AMDLFRQLRESVSNVDG 309



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 2/176 (1%)

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           L  LL  C++ G  D G  V++         D I+   LIDMY KC  +DLA  VF    
Sbjct: 7   LAKLLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRML 66

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
           +++V ++T+ + G    G++  +  L   M   G+ P+  ++   L AC  LG VE G  
Sbjct: 67  ERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVENGM- 125

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
             H M    G +         +D+  + G +  AE     MP + + V W  ++  
Sbjct: 126 QIHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFR-NLVSWNAMIAG 180


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 191/538 (35%), Positives = 301/538 (55%), Gaps = 39/538 (7%)

Query: 12  FVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQR 71
           F+  +L++ Y+  G +RD   VF+   +  ++SWN++I+ + RNG+  E L LF +M  +
Sbjct: 339 FLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQ 398

Query: 72  --------------------------------------NDVSWNSILGGLVRFGSVDDAC 93
                                                 ND   N+++    + G V  A 
Sbjct: 399 GLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFNDFVQNALIDMYAKCGFVHSAN 458

Query: 94  RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153
           ++F ++ ++SLV+W  +I GF+QNG   EA+ LF +M    ++ +    +S++ AC+ LG
Sbjct: 459 KMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLG 518

Query: 154 ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIF 213
            L+ G WV+  +    ++ DS L  AL DMY+KCG + +A  VF    ++ + +++  I 
Sbjct: 519 YLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIA 578

Query: 214 GLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIK 273
           G  M+G       LF  M   GI P+ I+++ +LSACSH G VE+G  YF+SM +  G++
Sbjct: 579 GYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSMSEF-GVE 637

Query: 274 PELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNM 333
           P+ DH+ACMVDLL RAG L  A   I S+P   ++ IWG LL  CR+H+  ++ + I   
Sbjct: 638 PKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIHKRIDIIKSIEKN 697

Query: 334 LIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLA 393
           L++ D    G Y LLSNIY E    +   +VR  M+ + +++ PG S IE+D  ++ F  
Sbjct: 698 LLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEIDKKIYRFGP 757

Query: 394 GDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGL 453
           GD SH +T++IY+F E     +    Y+ E  + +    +  KE  +  HSEKLA+AFG+
Sbjct: 758 GDTSHSQTKDIYRFLENFRSLVHAQVYDSEPDNSIVGTSKFNKENNVVSHSEKLAIAFGI 817

Query: 454 ICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           I T+PG+ +RI KN+R+C DCHS  K+ SK+  R+I +RD   +H F +GSCSC +YW
Sbjct: 818 INTRPGTTLRISKNLRVCRDCHSFAKIASKITGREIIMRDLNRFHCFRNGSCSCNDYW 875



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 105/376 (27%), Positives = 173/376 (46%), Gaps = 43/376 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VV+     +  + NSLI  Y   G +  A  +F+         W  MI+ Y ++G   E 
Sbjct: 227 VVRREIESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEA 286

Query: 62  LKLFDKMPQ----RNDVSWNSILGGLVRFGSVD--------------------------- 90
           L +F KM +     N V+   +L    R G V                            
Sbjct: 287 LNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALME 346

Query: 91  ---------DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
                    D  +VF  + +++++SW  LIS F +NG+P+EAL LF +MQ+  L P+S  
Sbjct: 347 LYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYS 406

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           L S LSAC  +     G  ++ YI K     +  +  ALIDMYAKCG +  A ++F    
Sbjct: 407 LASSLSACGTISFSQLGAQIHGYIIKTG-NFNDFVQNALIDMYAKCGFVHSANKMFEKIK 465

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
           +K +  + S I G + NG+S+EA  LF+ M    +  D +++++V+ ACSHLG++EKG +
Sbjct: 466 EKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKW 525

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
             H +  ++G++ +      + D+  + G L+ A      M  +   V W  ++    +H
Sbjct: 526 VHHKLI-MYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSER-SIVSWSVMIAGYGMH 583

Query: 322 RNAEMGQRIGNMLIES 337
                   + N ++ S
Sbjct: 584 GQINATISLFNQMLGS 599



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 155/340 (45%), Gaps = 43/340 (12%)

Query: 17  LIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM-----PQR 71
           LI+ Y+  G    ++ VFD     D   W  +I  YV  G   E + L+ +M      Q 
Sbjct: 39  LIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQI 98

Query: 72  NDVSWNSILGGLVRFGSV-----------------------------------DDACRVF 96
           ++  + S+L     FG +                                   DDAC+ F
Sbjct: 99  SNFVFPSVLKACSGFGDLSVGGKVHGRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAF 158

Query: 97  NQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALD 156
           + MP R +V+W  ++  F QNG+  E L +F +M S  +EP+S  ++S+  AC++LG+L 
Sbjct: 159 DTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLR 218

Query: 157 YGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLA 216
            G  V+ Y+ ++ I+ ++ L  +LI MY K G +  A ++F +   +  + +T  I    
Sbjct: 219 LGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYN 278

Query: 217 MNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPEL 276
            +G   EA  +F  M+   + P+ ++ + VL AC+ LG V++G    H       + PEL
Sbjct: 279 QSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEG-RSVHGFVIRRAMDPEL 337

Query: 277 DHYA-CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
           D     +++L    G L +      ++  K   + W TL+
Sbjct: 338 DFLGPALMELYADTGNLRDCHKVFETIKEKTI-LSWNTLI 376



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/360 (26%), Positives = 169/360 (46%), Gaps = 55/360 (15%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K  F  D  V+ SL+  Y     + DA   FD     DVV+W+S++  +V+NG+  EG
Sbjct: 126 VIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEG 185

Query: 62  LKLFDKM------PQ----------------------------RNDVSWNSILGG--LVR 85
           L +F +M      P                             R ++  N+ L    +V 
Sbjct: 186 LDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSLIVM 245

Query: 86  FGSVDD---ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
           +G + D   A R+F  +P R    W  +IS + Q+G  +EAL +F +MQ   +EPN   +
Sbjct: 246 YGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTM 305

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCI--KLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
           V +L ACA+LG +  G  V+ ++ ++ +  +LD  L  AL+++YA  G++    +VF + 
Sbjct: 306 VGVLCACARLGRVKEGRSVHGFVIRRAMDPELD-FLGPALMELYADTGNLRDCHKVFETI 364

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
            +K + ++ + I     NG   EA  LF  M+++G+ PDS S  + LSAC  + + + G 
Sbjct: 365 KEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLG- 423

Query: 261 YYFHSMFDVHGIKPELDHY-----ACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
                   +HG   +  ++       ++D+  + G +  A      +  K   V W +++
Sbjct: 424 ------AQIHGYIIKTGNFNDFVQNALIDMYAKCGFVHSANKMFEKIKEK-SLVTWNSMI 476



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/346 (22%), Positives = 155/346 (44%), Gaps = 36/346 (10%)

Query: 64  LFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEA 123
           LF     R+  +   ++    + G  + + RVF+  PK     W VLI  +   G  +EA
Sbjct: 24  LFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGFFEEA 83

Query: 124 LALFREMQSLD-LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182
           ++L+ EM   D  + ++ +  S+L AC+  G L  G  V+  + K   + D+++  +L+ 
Sbjct: 84  VSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHGRVIKCGFESDAVVETSLLC 143

Query: 183 MYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSIS 242
           MY +   +D A + F +   +DV A++S +     NG + E  ++F  M S+ + PDS++
Sbjct: 144 MYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVEPDSVT 203

Query: 243 YIAVLSACSHLGWVEKG----------------------FYYFHSMFDVHGIKPELDHYA 280
            ++V  ACS LG +  G                         +  + D++  +   ++  
Sbjct: 204 MLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERLFENVP 263

Query: 281 C--------MVDLLGRAGLLEEAENFIASM---PMKPDNVIWGTLLGACRVHRNAEMGQR 329
           C        M+    ++G  +EA N  A M    M+P+ V    +L AC      + G+ 
Sbjct: 264 CRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRS 323

Query: 330 IGNMLIESDQNHDGRYI--LLSNIYVETLKGENAEEVRKTMRKRKI 373
           +   +I    + +  ++   L  +Y +T    +  +V +T++++ I
Sbjct: 324 VHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTI 369



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 123/253 (48%), Gaps = 43/253 (16%)

Query: 9   YDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM 68
           ++ FV+N+LI  Y+ CG V  A  +F++  +  +V+WNSMI G+ +NG  +E + LFD+M
Sbjct: 436 FNDFVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQM 495

Query: 69  PQ--------------------------------------RNDVSWNSILGGLV-RFGSV 89
                                                   R D   ++ L  +  + G +
Sbjct: 496 YMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGEL 555

Query: 90  DDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
             A  VF++M +RS+VSW V+I+G+  +G+    ++LF +M    ++PN    + +LSAC
Sbjct: 556 QMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSAC 615

Query: 150 AQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYT 209
           +  GA++ G   ++ + +  ++      A ++D+ ++ G ++ A Q+  S          
Sbjct: 616 SHAGAVEEGKLYFNSMSEFGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLP----FPAN 671

Query: 210 SAIFGLAMNGHSI 222
           S+I+G  +NG  I
Sbjct: 672 SSIWGALLNGCRI 684


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 182/485 (37%), Positives = 298/485 (61%), Gaps = 8/485 (1%)

Query: 31   RWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVD 90
            R   +E   L VV    +++ Y + G +    K++D+  +++ +  N ++   V  G  +
Sbjct: 608  RNTMEEEGILQVV----LVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRAN 663

Query: 91   DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
            DA  +F+QM +R+   W  +++G+A  G  KE+   F EM   D+E +   +V++++ C+
Sbjct: 664  DAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCS 723

Query: 151  QLGALDYGNWVYSYIQKKC-IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYT 209
             L AL++G+ ++S I KK  +    +L  AL+DMY+KCG+I  A  VF +   K++ ++ 
Sbjct: 724  SLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWN 783

Query: 210  SAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDV 269
            + I G + +G S EA  L+E M  KG+ P+ ++++A+LSACSH G VE+G   F SM + 
Sbjct: 784  AMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQED 843

Query: 270  HGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQR 329
            + I+ + +HY CMVDLLGRAG LE+A+ F+  MP++P+   WG LLGACRVH++ +MG+ 
Sbjct: 844  YNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRL 903

Query: 330  IGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVH 389
                L E D  + G Y+++SNIY    + +  E++R+ M+ + +K+ PG S IE++  + 
Sbjct: 904  AAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQ 963

Query: 390  EFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY---HSEK 446
             F AG ++H KT+EIY     +  + K  GY  +T  ++ ++++ ++E    Y   HSE+
Sbjct: 964  IFHAGSKTHPKTEEIYNNLRHLTLQSKGLGYIPDTSFILQNVKDIKEEEEEEYLLQHSER 1023

Query: 447  LALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCS 506
            LAL+ GLI     S IR+ KN+RIC DCH+A K +SK+  R+I  RD   +HHFE+G CS
Sbjct: 1024 LALSLGLISLPKKSTIRVFKNLRICGDCHTATKFISKITGRRIIARDTNRFHHFENGKCS 1083

Query: 507  CLEYW 511
            C +YW
Sbjct: 1084 CGDYW 1088



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 163/329 (49%), Gaps = 41/329 (12%)

Query: 7   FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFD 66
           F  D FV N+LI  Y+ C        VFDE  + + V+WNS+I+   + G   + L LF 
Sbjct: 307 FKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFL 366

Query: 67  KMPQ----------------------------------RNDVSWNSILGGLV-----RFG 87
           +M +                                  RN ++ + ILG  +     + G
Sbjct: 367 RMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCG 426

Query: 88  SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD-LEPNSAILVSLL 146
            V++A +VF  + +R+ VS+  L++G+ Q G+ +EAL L+ +MQS D ++P+     +LL
Sbjct: 427 MVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLL 486

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
           + CA     + G  +++++ +  I  + I+   L+ MY++CG ++ A ++F+   +++  
Sbjct: 487 TLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAY 546

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
           ++ S I G   NG + EA  LF+ M+  GI PD  S  ++LS+C  L   +KG    H+ 
Sbjct: 547 SWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKG-RELHNF 605

Query: 267 FDVHGIKPELDHYACMVDLLGRAGLLEEA 295
              + ++ E      +VD+  + G ++ A
Sbjct: 606 IVRNTMEEEGILQVVLVDMYAKCGSMDYA 634



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 103/392 (26%), Positives = 173/392 (44%), Gaps = 74/392 (18%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +V+N    D+ + ++L+  YS CG V +A  VF    + + VS+N+++ GYV+ G+  E 
Sbjct: 403 LVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEA 462

Query: 62  LKLFDKMP---------------------QRNDVSWNSILGGLVRF-------------- 86
           L+L+  M                      QRND     I   L+R               
Sbjct: 463 LELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVH 522

Query: 87  -----GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
                G ++ A  +FN+M +R+  SW  +I G+ QNG  +EAL LF++MQ   ++P+   
Sbjct: 523 MYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFS 582

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           L S+LS+C  L     G  ++++I +  ++ + IL   L+DMYAKCGS+D A +V+    
Sbjct: 583 LSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTI 642

Query: 202 DKDV-------------------------------SAYTSAIFGLAMNGHSIEAFELFEN 230
            KDV                               + + S + G A  G   E+F  F  
Sbjct: 643 KKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLE 702

Query: 231 MKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG-IKPELDHYACMVDLLGRA 289
           M    I  D ++ + +++ CS L  +E G    HS+    G +   +     +VD+  + 
Sbjct: 703 MLESDIEYDVLTMVTIVNLCSSLPALEHG-DQLHSLIIKKGFVNCSVVLETALVDMYSKC 761

Query: 290 GLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           G + +A     +M  K + V W  ++     H
Sbjct: 762 GAITKARTVFDNMNGK-NIVSWNAMISGYSKH 792



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 141/291 (48%), Gaps = 40/291 (13%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VVK     ++FV  +L+  Y+  G + DA    DE +   VV+WN++I GYV+     E 
Sbjct: 201 VVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEA 260

Query: 62  LKLFDKMPQRNDVSWNSILGGLVR------------------------------------ 85
             +FD+M +      N      +R                                    
Sbjct: 261 WGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDM 320

Query: 86  FGSVDD--AC-RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
           +   DD  +C +VF++M +R+ V+W  +IS  AQ G   +AL LF  MQ    + N   L
Sbjct: 321 YAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNL 380

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S+L A A L  +  G  ++ ++ +  +  D IL +AL+DMY+KCG ++ A QVF S  +
Sbjct: 381 GSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLE 440

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSK-GISPDSISYIAVLSACSH 252
           ++  +Y + + G    G + EA EL+ +M+S+ GI PD  ++  +L+ C++
Sbjct: 441 RNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCAN 491



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 99/431 (22%), Positives = 179/431 (41%), Gaps = 86/431 (19%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRD---ARWVFDESDDLDVVSWNSMINGYVRNGEI 58
           ++ N +  D ++   ++  Y+  G + D   AR +F+E  + ++ +WN+MI  Y R  + 
Sbjct: 97  MISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDY 156

Query: 59  LEGLKLFDKMPQRNDVS---------------------------------------WNSI 79
           +E L+L+ +M    + S                                         ++
Sbjct: 157 MEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGAL 216

Query: 80  LGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS 139
           + G  RFG +DDA    +++   S+V+W  +I+G+ +    +EA  +F  M  + + P++
Sbjct: 217 VDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDN 276

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
               S L  C  L + D G  V+S +     K D+ +  ALIDMYAKC   +  ++VF  
Sbjct: 277 FTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDE 336

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
            G+++   + S I   A  GH  +A  LF  M+  G   +  +  ++L A + L  + KG
Sbjct: 337 MGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKG 396

Query: 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM----------------- 302
               H     + +  ++   + +VD+  + G++EEA     S+                 
Sbjct: 397 -RELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQ 455

Query: 303 ------------------PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGR 344
                              ++PD   + TLL  C   RN   G++I   LI ++      
Sbjct: 456 EGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRAN------ 509

Query: 345 YILLSNIYVET 355
             +  NI VET
Sbjct: 510 --ITKNIIVET 518



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 88/168 (52%), Gaps = 13/168 (7%)

Query: 1   MVVKNSFAY-DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEIL 59
           +++K  F    V ++ +L+  YS CG +  AR VFD  +  ++VSWN+MI+GY ++G   
Sbjct: 737 LIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSK 796

Query: 60  EGLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVL 110
           E L L+++MP++    N+V++ +IL      G V++  R+F  M +   +      +  +
Sbjct: 797 EALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCM 856

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
           +    + GR ++A     +M    +EP  +   +LL AC     +D G
Sbjct: 857 VDLLGRAGRLEDAKEFVEKMP---IEPEVSTWGALLGACRVHKDMDMG 901



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 62/288 (21%), Positives = 122/288 (42%), Gaps = 9/288 (3%)

Query: 37  SDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQR--NDVSW--NSILGGLVRFGSVDDA 92
           + D++ + ++S+I   + +     G  +  +M     N  ++    IL    R G +DD 
Sbjct: 66  ASDVNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDL 125

Query: 93  C---RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
           C   ++F +MP+R+L +W  +I  +A+     E L L+  M+      +     S++ AC
Sbjct: 126 CYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKAC 185

Query: 150 AQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYT 209
             +  +     + S + K  +  +  +  AL+D YA+ G +D A+          V  + 
Sbjct: 186 IAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWN 245

Query: 210 SAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDV 269
           + I G        EA+ +F+ M   G+ PD+ ++ + L  C  L   + G    HS    
Sbjct: 246 AVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGG-KQVHSKLIA 304

Query: 270 HGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
            G K +      ++D+  +    E        M  + + V W +++ A
Sbjct: 305 CGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGER-NQVTWNSIISA 351


>gi|357477567|ref|XP_003609069.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510124|gb|AES91266.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 611

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 190/486 (39%), Positives = 290/486 (59%), Gaps = 22/486 (4%)

Query: 34  FDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFG-----S 88
           F    D  +    ++I+ Y   G      K+FD+M Q N V+WN+++    R G      
Sbjct: 140 FRHGFDDHIFVGTTLISMYAECGCYEYARKVFDEMSQPNVVAWNAVVTACFRCGMWRVLG 199

Query: 89  VDDACR--VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           V    R  VF +M  R   SW  +I GFA++G   +A   F+E+      P+   L  +L
Sbjct: 200 VSFGWREVVFCEMKMRDDASWSTMIVGFAKSGSFHDAFGFFKELLRDRNRPSEVSLTGVL 259

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
           SACAQ GA ++G  ++ +++K        +  ALID Y+KCG++D+A  VF+        
Sbjct: 260 SACAQAGAFEFGKILHGFMEKAGFLCIVSVNNALIDTYSKCGNVDMAKLVFN-------- 311

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
                   LAM+G + EA  +F  M+  G+ PD +++I++L ACSH G VE+G   F  M
Sbjct: 312 ------ISLAMHGRADEAIRVFHEMEESGVRPDGVTFISLLYACSHSGLVEQGCALFSKM 365

Query: 267 FDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEM 326
            + +GI+P ++HY CMVDL GRA  L++A  FI  MP+ P+ +IW TLLGAC +H N E+
Sbjct: 366 RNFYGIEPAIEHYGCMVDLYGRAARLQKAYEFIRQMPILPNVIIWRTLLGACSIHGNIEL 425

Query: 327 GQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDG 386
            + +   L E D N+ G ++LLSN+Y    K ++   +R+TM ++ +K+ PG S+IE+D 
Sbjct: 426 AELVKARLAEMDPNNSGDHVLLSNVYAVAGKWKDVAGIRRTMIEQSMKKIPGWSMIEIDK 485

Query: 387 VVHEFLAGDRSHEKTQEIYQFWEEIVKKIK-NYGYNVETRSVMFDIEEEEKETVIGYHSE 445
           V + F+AG++ +E T+E +    EI+ +++   GY  + RSV+ D+EEEEKE  +  HSE
Sbjct: 486 VNYGFVAGEKPNEVTKEAHDKLREIMLRLREEEGYAPQVRSVLHDVEEEEKEDSMSKHSE 545

Query: 446 KLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSC 505
           KLA AFG+     G ++RIVKN+R+C DCH+ MKL+SKV++ +I +RDR  +H F+ G C
Sbjct: 546 KLAAAFGIAKLPKGRILRIVKNLRVCGDCHTVMKLISKVYQVEIIVRDRSRFHSFKGGFC 605

Query: 506 SCLEYW 511
           SC +YW
Sbjct: 606 SCRDYW 611



 Score = 42.7 bits (99), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 37/182 (20%), Positives = 76/182 (41%), Gaps = 7/182 (3%)

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS---IDLAMQVF 197
           IL+SLLS C     L     +++++    +         L+   A   S   ++ ++++F
Sbjct: 11  ILLSLLSNCNT--TLKTTKQIHTHLYVTGLHTHPFFFGKLLLNCAVSISDHVLNYSLRLF 68

Query: 198 HSYGDKDVSAYTSAIFGLAMNGHSIEAFELF-ENMKSKGISPDSISYIAVLSACSHLGWV 256
           H + + D   Y + I  L+ +   + + + F + ++   + PDS S+   L   ++ G  
Sbjct: 69  HHFPNPDTFMYNTLIRSLSHSSTPLSSLQPFIQLLRHPTLLPDSFSFAFTLKGIANDGCS 128

Query: 257 EKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLG 316
           ++     HS    HG    +     ++ +    G  E A      M  +P+ V W  ++ 
Sbjct: 129 KRQGIQLHSHAFRHGFDDHIFVGTTLISMYAECGCYEYARKVFDEMS-QPNVVAWNAVVT 187

Query: 317 AC 318
           AC
Sbjct: 188 AC 189


>gi|224143723|ref|XP_002325053.1| predicted protein [Populus trichocarpa]
 gi|222866487|gb|EEF03618.1| predicted protein [Populus trichocarpa]
          Length = 607

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 188/443 (42%), Positives = 279/443 (62%), Gaps = 8/443 (1%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136
           NS++      GS++ A  VF++MP+RSLVSW  +I  F   G  + AL LF + Q    E
Sbjct: 165 NSLIHFYASCGSLESAKNVFDKMPQRSLVSWNAMIDAFVLFGEFETALQLFVQFQQQFFE 224

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKC---IKLDSILCA-ALIDMYAKCGSIDL 192
           P+   + S+++ACA L AL  G W ++++ + C   +  D +L   +L+DMY KCGS+D+
Sbjct: 225 PDGYTIQSVINACAGLCALSLGMWAHAFLLRNCGVSVARDHVLVNNSLLDMYCKCGSLDI 284

Query: 193 AMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM-KSKGISPDSISYIAVLSACS 251
           A Q+F      DV+++ S I G AM+G    A E FE M +     P+SI+++ VLSAC+
Sbjct: 285 ATQIFEGMQKHDVTSWNSMILGFAMHGKGELALECFERMIRISRFVPNSITFVGVLSACN 344

Query: 252 HLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIW 311
           H   V +G  YF  M + + I+P+L+HY C+VD+L RAGL++EA   +ASMPMKPD VIW
Sbjct: 345 HRYMVNEGRKYFDMMVNEYKIEPQLEHYGCLVDILARAGLIDEALELVASMPMKPDVVIW 404

Query: 312 GTLLGAC-RVHRNAEMGQRIGNMLIESDQ-NHDGRYILLSNIYVETLKGENAEEVRKTMR 369
            +LL +C + + + E+ + I   ++ES++ +  G Y+LLS +Y    +  +   VRK M 
Sbjct: 405 RSLLDSCCKKNASVELSENIARQILESEEADSSGVYVLLSRVYASASRWNDVGLVRKLMT 464

Query: 370 KRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVE-TRSVM 428
              I + PGCSLIE+DGV HEF AGD SH +T+EIYQ    + ++I + GY  + +++ M
Sbjct: 465 NNGILKEPGCSLIEVDGVTHEFFAGDTSHPQTKEIYQVLNVVEERIDSTGYKPDYSQAPM 524

Query: 429 FDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRK 488
            D     K   +  HSE+LA+A GL+  KPG  IRI KN+R+C DCH    L+S++F  +
Sbjct: 525 VDELNTSKRDSLRLHSERLAIALGLLNLKPGMPIRIFKNLRVCDDCHKVTGLISEIFNVE 584

Query: 489 ISIRDRKHYHHFEDGSCSCLEYW 511
           I +RDR  +HHF+DGSCSC++YW
Sbjct: 585 IIVRDRVRFHHFKDGSCSCMDYW 607



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 123/279 (44%), Gaps = 13/279 (4%)

Query: 59  LEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDD---ACRVFNQMPKRSLVSWVVLISGFA 115
           +  L L   +P  +   +  +   ++ F S+ D   A RVF+Q+   +   W +LI   A
Sbjct: 41  IHALSLRSTLPNHSTTLF--LYSRILHFSSLHDLNYAYRVFDQVDNPNSFMWNILIRACA 98

Query: 116 QNGR---PKEALALFREM-QSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK 171
           Q+      +EA+ L+  M Q     P++     +L ACA L AL  G   ++++ K   +
Sbjct: 99  QSQSVHLKREAILLYNTMLQRSSPFPDNHTFPFVLKACAYLFALFEGKQAHAHLLKLGFQ 158

Query: 172 LDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM 231
            D  +  +LI  YA CGS++ A  VF     + + ++ + I    + G    A +LF   
Sbjct: 159 SDVYINNSLIHFYASCGSLESAKNVFDKMPQRSLVSWNAMIDAFVLFGEFETALQLFVQF 218

Query: 232 KSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYAC---MVDLLGR 288
           + +   PD  +  +V++AC+ L  +  G +    +    G+    DH      ++D+  +
Sbjct: 219 QQQFFEPDGYTIQSVINACAGLCALSLGMWAHAFLLRNCGVSVARDHVLVNNSLLDMYCK 278

Query: 289 AGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMG 327
            G L+ A      M  K D   W +++    +H   E+ 
Sbjct: 279 CGSLDIATQIFEGM-QKHDVTSWNSMILGFAMHGKGELA 316



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 73/154 (47%), Gaps = 13/154 (8%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ 70
           V V NSL+  Y  CG +  A  +F+     DV SWNSMI G+  +G+    L+ F++M +
Sbjct: 266 VLVNNSLLDMYCKCGSLDIATQIFEGMQKHDVTSWNSMILGFAMHGKGELALECFERMIR 325

Query: 71  -----RNDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLISGFAQNGRP 120
                 N +++  +L        V++  + F+ M         L  +  L+   A+ G  
Sbjct: 326 ISRFVPNSITFVGVLSACNHRYMVNEGRKYFDMMVNEYKIEPQLEHYGCLVDILARAGLI 385

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGA 154
            EAL L   + S+ ++P+  I  SLL +C +  A
Sbjct: 386 DEALEL---VASMPMKPDVVIWRSLLDSCCKKNA 416



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 37/56 (66%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGE 57
           ++K  F  DV++ NSLI FY+ CG +  A+ VFD+     +VSWN+MI+ +V  GE
Sbjct: 152 LLKLGFQSDVYINNSLIHFYASCGSLESAKNVFDKMPQRSLVSWNAMIDAFVLFGE 207


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 178/470 (37%), Positives = 286/470 (60%), Gaps = 4/470 (0%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFN----QMPK 101
           ++MI+ Y ++G +   + LF++         N+ + GL R G VD A  +F     Q  +
Sbjct: 291 SAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTME 350

Query: 102 RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161
            ++VSW  +I+G AQNG+  EAL LFREMQ   ++PN   + S+L AC  + AL +G   
Sbjct: 351 LNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRST 410

Query: 162 YSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHS 221
           + +  +  +  +  + +ALIDMYAKCG I+L+  VF+    K++  + S + G +M+G +
Sbjct: 411 HGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKA 470

Query: 222 IEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYAC 281
            E   +FE++    + PD IS+ ++LSAC  +G  ++G+ YF  M + +GIKP L+HY+C
Sbjct: 471 KEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSC 530

Query: 282 MVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH 341
           MV+LLGRAG L+EA + I  MP +PD+ +WG LL +CR+  N ++ +     L   +  +
Sbjct: 531 MVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPEN 590

Query: 342 DGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKT 401
            G Y+LLSNIY         + +R  M    +K+ PGCS I++   V+  LAGD+SH + 
Sbjct: 591 PGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQI 650

Query: 402 QEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSV 461
            +I +  +EI K+++  G+       + D+EE+E+E ++  HSEKLA+ FGL+ T  G+ 
Sbjct: 651 DQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTP 710

Query: 462 IRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           ++++KN+RIC DCH+ +K +S    R+I IRD   +HHF+DG CSC ++W
Sbjct: 711 LQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 159/355 (44%), Gaps = 72/355 (20%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D FV+ S+   Y  CGR+ DAR VFD   D DVV+ ++++  Y R G + E +++  +M 
Sbjct: 150 DAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEME 209

Query: 70  ----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALA 125
               + N VSWN IL                               SGF ++G  KEA+ 
Sbjct: 210 SSGIEANIVSWNGIL-------------------------------SGFNRSGYHKEAVV 238

Query: 126 LFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYA 185
           +F+++  L   P+   + S+L +      L+ G  ++ Y+ K+ +  D  + +A+IDMY 
Sbjct: 239 MFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYG 298

Query: 186 KCGS-------------------------------IDLAMQVFHSYGDK----DVSAYTS 210
           K G                                +D A+++F  + ++    +V ++TS
Sbjct: 299 KSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTS 358

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I G A NG  IEA ELF  M+  G+ P+ ++  ++L AC ++  +  G         VH
Sbjct: 359 IIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVH 418

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAE 325
            +   +   + ++D+  + G +  ++     MP K + V W +L+    +H  A+
Sbjct: 419 -LLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTK-NLVCWNSLMNGFSMHGKAK 471



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 84/181 (46%)

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
           +   +DA  V   +P  ++ S+  LI    +     +++ +F  M S  L P+S +L +L
Sbjct: 63  YNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNL 122

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
              CA+L A   G  ++       + +D+ +  ++  MY +CG +  A +VF    DKDV
Sbjct: 123 FKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDV 182

Query: 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHS 265
              ++ +   A  G   E   +   M+S GI  + +S+  +LS  +  G+ ++    F  
Sbjct: 183 VTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQK 242

Query: 266 M 266
           +
Sbjct: 243 I 243



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 80/149 (53%), Gaps = 12/149 (8%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           +V V ++LI  Y+ CGR+  ++ VF+     ++V WNS++NG+  +G+  E + +F+ + 
Sbjct: 422 NVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLM 481

Query: 70  QR----NDVSWNSILGGLVRFGSVDDACRVFNQMP-----KRSLVSWVVLISGFAQNGRP 120
           +     + +S+ S+L    + G  D+  + F  M      K  L  +  +++   + G+ 
Sbjct: 482 RTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKL 541

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSAC 149
           +EA  L +EM     EP+S +  +LL++C
Sbjct: 542 QEAYDLIKEM---PFEPDSCVWGALLNSC 567


>gi|302754942|ref|XP_002960895.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
 gi|300171834|gb|EFJ38434.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
          Length = 903

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 197/549 (35%), Positives = 308/549 (56%), Gaps = 49/549 (8%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM- 68
           D+ + N+L+  Y+ CG   +AR +F +    + VSWN+MI G  + G++   ++LF +M 
Sbjct: 357 DIVLGNALLDMYTRCGSPEEARHLF-KRIPCNAVSWNTMIAGSSQKGQMKRAVELFQRMQ 415

Query: 69  -----PQRND---------------------------------VSWNSILGGLVRF---- 86
                P R                                    S  +I   +V+     
Sbjct: 416 LEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASC 475

Query: 87  GSVDDACRVFNQMP---KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
           G++D+A   F +     +  +VSW  +IS  +Q+G  K AL  FR M    + PN    V
Sbjct: 476 GAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCV 535

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG-D 202
           ++L ACA   AL  G  V+ +++   ++ +  +  AL  MY +CGS++ A ++F     +
Sbjct: 536 AVLDACAGAAALTEGEIVHDHLRHSGMESNLFVATALASMYGRCGSLESAREIFEKVAVE 595

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           +DV  + + I   + NG + EA +LF  M+ +G  PD  S+++VLSACSH G  ++G+  
Sbjct: 596 RDVVIFNAMIAAYSQNGLAGEALKLFWRMQQEGSRPDEQSFVSVLSACSHGGLADEGWEI 655

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F SM   +GI P  DHYAC VD+LGRAG L +AE  I  M +KP  ++W TLLGACR +R
Sbjct: 656 FRSMRQSYGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDVKPTVLVWKTLLGACRKYR 715

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           + + G+   +M+ E D   +  Y++LSNI     K + A EVR  M  R +++  G S I
Sbjct: 716 DVDRGRLANSMVRELDPGDESAYVVLSNILAGAGKWDEAAEVRTEMESRGLRKEAGKSWI 775

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E+   VHEF+AGDRSH +++EIY+  E +  +I+  GY  +TR V+  ++E EKE ++  
Sbjct: 776 EIKSRVHEFVAGDRSHPRSEEIYRELERLHAEIREIGYVPDTRLVLRKVDEAEKERLLCQ 835

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSE+LA+A G++ +   +V R++KN+R+C DCH+A K +SK+  ++I +RD   +HHF D
Sbjct: 836 HSERLAIALGVMSSSTDTV-RVMKNLRVCEDCHNATKFISKIVNKEIVVRDTHRFHHFVD 894

Query: 503 GSCSCLEYW 511
           GSCSC +YW
Sbjct: 895 GSCSCGDYW 903



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 98/360 (27%), Positives = 166/360 (46%), Gaps = 45/360 (12%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V ++     + V  +L   Y+  G +  A+ VFD + + DVVSWN+M+  Y ++G + E
Sbjct: 250 IVRESGLEQTLVVSTALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSE 309

Query: 61  GLKLFDKM------PQ------------------------------RNDVSWNSILGGLV 84
              LF +M      P                               R+ V  N++L    
Sbjct: 310 AALLFARMLHEGISPSKVTLVNASTGCSSLRFGRMIHGCALEKGLDRDIVLGNALLDMYT 369

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
           R GS ++A  +F ++P  + VSW  +I+G +Q G+ K A+ LF+ MQ   + P  A  ++
Sbjct: 370 RCGSPEEARHLFKRIPCNA-VSWNTMIAGSSQKGQMKRAVELFQRMQLEGMAPVRATYLN 428

Query: 145 LLSACA----QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH-- 198
           LL A A    +  A+  G  ++S I       +  +  A++ MYA CG+ID A   F   
Sbjct: 429 LLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRG 488

Query: 199 SYGDK-DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVE 257
           +  D+ DV ++ + I  L+ +GH   A   F  M   G++P+ I+ +AVL AC+    + 
Sbjct: 489 AMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALT 548

Query: 258 KGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
           +G    H      G++  L     +  + GR G LE A      + ++ D VI+  ++ A
Sbjct: 549 EG-EIVHDHLRHSGMESNLFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAA 607



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 98/412 (23%), Positives = 168/412 (40%), Gaps = 63/412 (15%)

Query: 6   SFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLF 65
           S   +  + N L++ Y  C  + D   VF   +  D  SW ++I  Y  +G+    + +F
Sbjct: 57  SLGLEEELGNHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITAYTEHGQAKRAIGMF 116

Query: 66  DKMPQR----NDVSWNSILGGLVRFGS--------------------------------- 88
            +M Q     + V++ ++L    R G                                  
Sbjct: 117 HRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLKGKSVLANLLLHIYGSC 176

Query: 89  --VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
             V  A  +F +M +R LVSW   I+  AQ+G    AL LF+ MQ   + P    LV  L
Sbjct: 177 GCVASAMLLFEKM-ERDLVSWNAAIAANAQSGDLGIALELFQRMQLEGVRPARITLVIAL 235

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
           + CA    +     ++  +++  ++   ++  AL   YA+ G +  A +VF    ++DV 
Sbjct: 236 TVCA---TIRQAQAIHFIVRESGLEQTLVVSTALASAYARLGHLYQAKEVFDRAAERDVV 292

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
           ++ + +   A +GH  EA  LF  M  +GISP  ++ +   + CS L    +     H  
Sbjct: 293 SWNAMLGAYAQHGHMSEAALLFARMLHEGISPSKVTLVNASTGCSSL----RFGRMIHGC 348

Query: 267 FDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC----RVHR 322
               G+  ++     ++D+  R G  EEA +    +P   + V W T++       ++ R
Sbjct: 349 ALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFKRIPC--NAVSWNTMIAGSSQKGQMKR 406

Query: 323 NAEMGQRIGNMLIESDQNHDGRYI-LLSNIYVETLKGENAEEVRKTMRKRKI 373
             E+ QR   M +E        Y+ LL  +        N EE R     RK+
Sbjct: 407 AVELFQR---MQLEGMAPVRATYLNLLEAV------ASNPEEARAMAEGRKL 449


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  363 bits (931), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 200/572 (34%), Positives = 309/572 (54%), Gaps = 65/572 (11%)

Query: 5   NSFAYDVFVKNSLIQFYSVCGRVRDARWVFD--ESDDLDVVSWNSMINGYVRNGEI-LEG 61
           +  A + FV ++L+  Y+   +V  AR VFD        +  WN+MI GY ++G +  E 
Sbjct: 290 DDLAANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMDEEA 349

Query: 62  LKLFDKMPQR----------------------------------------NDVSWNSILG 81
           ++LF +M                                           N    N+++ 
Sbjct: 350 IELFSRMEAEAGCAPSETTMAGVLPACARSEVFTGKEAVHGYVVKRDMASNRFVQNALMD 409

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQ---------- 131
              R G +D+A  +F  +  R +VSW  LI+G    G   EA  L REMQ          
Sbjct: 410 MYARLGRMDEAHTIFAMIDLRDIVSWNTLITGCIVQGLISEAFQLVREMQLPSSAASGET 469

Query: 132 -------SLDLE---PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
                  S+D +   PN+  L++LL  CA L A   G  ++ Y  +  ++ D  + +AL+
Sbjct: 470 MLEGDDTSVDGQRCMPNNITLMTLLPGCAVLAAPARGKEIHGYAVRHALESDLAVGSALV 529

Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG-ISPDS 240
           DMYAKCG + LA  VF     ++V  +   I    M+G   EA  LF+ M + G  +P+ 
Sbjct: 530 DMYAKCGCLALARAVFDRLPRRNVITWNVLIMAYGMHGLGDEALALFDRMVANGEATPNE 589

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
           +++IA L+ACSH G V++G   F  M   +G +P    +AC+VD+LGRAG L+EA   I+
Sbjct: 590 VTFIAALAACSHSGLVDRGLELFQGMKRDYGFEPTPYLHACVVDVLGRAGRLDEAYGIIS 649

Query: 301 SM-PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGE 359
           SM P +     W T+LGACR+HRN ++G+     L E + +    Y+LL NIY      E
Sbjct: 650 SMAPGEHQVSAWSTMLGACRLHRNVKLGRIAAERLFELEPDEASHYVLLCNIYSAAGLWE 709

Query: 360 NAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYG 419
           N+ EVR  MR+R + + PGCS IELDG +H F+AG+ +H ++ +++   + + ++++  G
Sbjct: 710 NSTEVRGMMRQRGVAKEPGCSWIELDGAIHRFMAGESAHPESAQVHAHMDALWERMRREG 769

Query: 420 YNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMK 479
           Y  +T  V+ D++E EK  ++ YHSEKLA+AFGL+   PG+ IR+ KN+R+C+DCH A K
Sbjct: 770 YVPDTSCVLHDVDEAEKAAMLRYHSEKLAIAFGLLRAPPGATIRVAKNLRVCNDCHEAAK 829

Query: 480 LVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            +S++  R+I +RD + +HHF DG+CSC +YW
Sbjct: 830 FISRMVGREIVLRDVRRFHHFRDGTCSCGDYW 861



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 145/312 (46%), Gaps = 34/312 (10%)

Query: 71  RNDVSWNSILGGLVRFGSVDDACRVF--NQMPKRSLVSWVVLISGFAQNGRPKEALALFR 128
           R    +N++L    R G VDDA R+F  +      LV+W  +IS   Q GR +EA+ +  
Sbjct: 190 RERFPFNALLSMYARLGLVDDAQRLFFSSGAGVGDLVTWNTMISLLVQGGRCEEAVQVLY 249

Query: 129 EMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK-KCIKLDSILCAALIDMYAKC 187
           +M +L + P+     S L AC++L  L  G  V++++ K   +  +S + +AL+DMYA  
Sbjct: 250 DMVALGVRPDGVTFASALPACSRLELLGVGREVHAFVLKDDDLAANSFVASALVDMYASN 309

Query: 188 GSIDLAMQVFHSYGD--KDVSAYTSAIFGLAMN-GHSIEAFELFENMKSK-GISPDSISY 243
             +  A +VF    +  + +  + + I G A + G   EA ELF  M+++ G +P   + 
Sbjct: 310 EQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMDEEAIELFSRMEAEAGCAPSETTM 369

Query: 244 IAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA------CMVDLLGRAGLLEEAEN 297
             VL AC+           F     VHG   + D  +       ++D+  R G ++EA  
Sbjct: 370 AGVLPACAR-------SEVFTGKEAVHGYVVKRDMASNRFVQNALMDMYARLGRMDEAHT 422

Query: 298 FIASMPMKPDNVIWGTLLGACRVH----------RNAEMGQRI--GNMLIESDQNH-DGR 344
             A + ++ D V W TL+  C V           R  ++      G  ++E D    DG+
Sbjct: 423 IFAMIDLR-DIVSWNTLITGCIVQGLISEAFQLVREMQLPSSAASGETMLEGDDTSVDGQ 481

Query: 345 YILLSNIYVETL 356
             + +NI + TL
Sbjct: 482 RCMPNNITLMTL 493



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 139/313 (44%), Gaps = 73/313 (23%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VVK   A + FV+N+L+  Y+  GR+ +A  +F   D  D+VSWN++I G +  G I E 
Sbjct: 392 VVKRDMASNRFVQNALMDMYARLGRMDEAHTIFAMIDLRDIVSWNTLITGCIVQGLISEA 451

Query: 62  LKLFDKMP---------------------QR---NDVSWNSILGGL-------------- 83
            +L  +M                      QR   N+++  ++L G               
Sbjct: 452 FQLVREMQLPSSAASGETMLEGDDTSVDGQRCMPNNITLMTLLPGCAVLAAPARGKEIHG 511

Query: 84  ---------------------VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKE 122
                                 + G +  A  VF+++P+R++++W VLI  +  +G   E
Sbjct: 512 YAVRHALESDLAVGSALVDMYAKCGCLALARAVFDRLPRRNVITWNVLIMAYGMHGLGDE 571

Query: 123 ALALF-REMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKK-CIKLDSILCAAL 180
           ALALF R + + +  PN    ++ L+AC+  G +D G  ++  +++    +    L A +
Sbjct: 572 ALALFDRMVANGEATPNEVTFIAALAACSHSGLVDRGLELFQGMKRDYGFEPTPYLHACV 631

Query: 181 IDMYAKCGSIDLAMQVFHSY--GDKDVSAYTSAIFGLAMNGH----SIEAFELFENMKSK 234
           +D+  + G +D A  +  S   G+  VSA+++ +    ++ +     I A  LFE     
Sbjct: 632 VDVLGRAGRLDEAYGIISSMAPGEHQVSAWSTMLGACRLHRNVKLGRIAAERLFE----- 686

Query: 235 GISPDSISYIAVL 247
            + PD  S+  +L
Sbjct: 687 -LEPDEASHYVLL 698



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 90/188 (47%), Gaps = 14/188 (7%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPK--RSLVSWVVLISGFAQNGRPKEALALFREMQSLD 134
           N++L    R G +D A  +F   P   R  VS+  LIS      R   AL   R+M + D
Sbjct: 89  NALLTAYARCGDLDAALALFAATPPDLRDAVSYNSLISALCLFRRWGHALDALRDMLA-D 147

Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK---LDS----ILCAALIDMYAKC 187
            E +S  LVS+L AC+ L   D G+ +        +K   LD         AL+ MYA+ 
Sbjct: 148 HEVSSFTLVSVLLACSHLA--DQGHRLGREAHAFALKHGFLDKGRERFPFNALLSMYARL 205

Query: 188 GSIDLAMQVFHSYGD--KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIA 245
           G +D A ++F S G    D+  + + I  L   G   EA ++  +M + G+ PD +++ +
Sbjct: 206 GLVDDAQRLFFSSGAGVGDLVTWNTMISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFAS 265

Query: 246 VLSACSHL 253
            L ACS L
Sbjct: 266 ALPACSRL 273


>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
           [Vitis vinifera]
 gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
          Length = 601

 Score =  363 bits (931), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 185/471 (39%), Positives = 277/471 (58%), Gaps = 40/471 (8%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +VK    +D FV+NSL+  ++ CG V  +R +F E+   DVVSW ++ING +RNG  +E 
Sbjct: 129 IVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEA 188

Query: 62  LKLFDKMP-----------------------------------QRNDVSWNSILGGLV-- 84
           L+ F +M                                    +   V W+  +G  +  
Sbjct: 189 LECFVEMRSSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVD 248

Query: 85  ---RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G  DDA +VFN+MP R+LVSW  LI+G+ Q  R KEAL +F+EM    +EPN + 
Sbjct: 249 MYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQST 308

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           + S L+ACAQLG+LD G W++ Y+ +  + L+S L  AL+DMY+KCG +D A+ VF    
Sbjct: 309 VTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLP 368

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
            KDV  +T+ I GLAM G ++ +  LF  M    + P+ ++++ VLSAC+H G V++G  
Sbjct: 369 AKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLE 428

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            F  M   + ++P +DHY CMVDLLGRAG LEEA  FI SMPM+P   +WG L   C +H
Sbjct: 429 LFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFSGCMIH 488

Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
           +  E+G+ IGN LI+   +H GRYILL+N+Y    K E A  VR+ M+ + + ++P CS 
Sbjct: 489 KAFELGEHIGNHLIKLQPHHSGRYILLANLYSRCQKWEAAANVRRLMKGKGVDKSPACSW 548

Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIE 432
           IE++GV+HEF+A D+SH ++  +Y     +  ++K   Y +++  + F I+
Sbjct: 549 IEVNGVIHEFIAFDKSHIESINVYMMLGSVTAQLKLATYALDSNLLTFTID 599



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 123/251 (49%), Gaps = 19/251 (7%)

Query: 95  VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA 154
           +F+++    +  W  ++  F+ + +P+  L  +  +++  + P+      LL A ++L  
Sbjct: 60  LFDRLATPYIFLWNTIVRSFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRN 119

Query: 155 LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFG 214
            +   + Y++I K  +  D+ +  +L+  +A CG +D + ++F     KDV ++T+ I G
Sbjct: 120 ENPFQF-YAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALING 178

Query: 215 LAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL------GWVEKGFYYFHSMFD 268
              NG ++EA E F  M+S G+  D ++ ++VL A + L       WV  GFY       
Sbjct: 179 CLRNGRAVEALECFVEMRSSGVEVDEVTVVSVLCAAAMLRDVWFGRWVH-GFY------- 230

Query: 269 VHGIKPELDHY--ACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL-GACRVHRNAE 325
           V   +   D Y  + +VD+  + G  ++A      MP + + V WG L+ G  + +R  E
Sbjct: 231 VESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTR-NLVSWGALIAGYVQCNRYKE 289

Query: 326 MGQRIGNMLIE 336
             +    M+IE
Sbjct: 290 ALKVFQEMIIE 300


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 204/548 (37%), Positives = 314/548 (57%), Gaps = 47/548 (8%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFD-ESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           V V N+LI  YS  G +++AR +F   S+D D VSWNSM+  Y+++ E  + L+L+ +M 
Sbjct: 173 VSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMT 232

Query: 70  QRNDV--------------SWNSILGGL----------------VRFGSVD--------- 90
            R  +              +   +LGGL                V  G +D         
Sbjct: 233 VRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCM 292

Query: 91  -DACRVFNQMPKRSLVSWVVLISGFA-QNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148
            D  +VF+++    LV W  +ISG++       EAL  FR++Q +   P+   LV ++SA
Sbjct: 293 LDCRKVFDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISA 352

Query: 149 CAQLGALDYGNWVYSYIQKKCIKLDSI-LCAALIDMYAKCGSIDLAMQVFHSYGDKDVSA 207
           C+ + +   G  V+    K  I  + I +  ALI MY+KCG++  A  +F +  + +  +
Sbjct: 353 CSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVS 412

Query: 208 YTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMF 267
           Y S I G A +G   ++  LF+ M   G +P +I++I+VL+AC+H G VE G  YF+ M 
Sbjct: 413 YNSMIAGYAQHGMGFQSLHLFQRMLEMGFTPTNITFISVLAACAHTGRVEDGKIYFNMMK 472

Query: 268 DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMG 327
              GI+PE  H++CM+DLLGRAG L EAE  I ++P  P    W  LLGACR+H N E+ 
Sbjct: 473 QKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFFWSALLGACRIHGNVELA 532

Query: 328 QRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGV 387
            +  N L++ D  +   Y++L+NIY +  + ++A  VRK MR R +K+ PGCS IE++  
Sbjct: 533 IKAANRLLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVNRR 592

Query: 388 VHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFD----IEEEEKETVIGYH 443
           +H F+A D  H   ++I ++ EE+++KIK  GY  E RS +      + + E+E  +G+H
Sbjct: 593 IHIFVAEDTFHPMIKKIQEYLEEMMRKIKKVGYTPEVRSALVGGDDRVWQREEELRLGHH 652

Query: 444 SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
           SEKLA++FGL+ T+ G  I + KN+RIC DCH+A+K +S+V KR+I++RD   +H F+DG
Sbjct: 653 SEKLAVSFGLMSTREGEPILVFKNLRICVDCHNAIKYISEVVKREITVRDSHRFHCFKDG 712

Query: 504 SCSCLEYW 511
            CSC  YW
Sbjct: 713 QCSCGGYW 720



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 118/256 (46%), Gaps = 43/256 (16%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGR-VRDARWVFDESDDLDVVSWNSMINGY-------- 52
           ++K+ +  +  V + LI  YS CG  + D R VFDE  + D+V WN+MI+GY        
Sbjct: 266 LIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDLSD 325

Query: 53  ---------------------------------VRNGEILEGLKLFDKMPQRNDVSWNSI 79
                                               G  + GL L   +P       N++
Sbjct: 326 EALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNAL 385

Query: 80  LGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS 139
           +    + G++ DA  +F+ MP+ + VS+  +I+G+AQ+G   ++L LF+ M  +   P +
Sbjct: 386 IAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMGFTPTN 445

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKC-IKLDSILCAALIDMYAKCGSIDLAMQVFH 198
              +S+L+ACA  G ++ G   ++ +++K  I+ ++   + +ID+  + G +  A ++  
Sbjct: 446 ITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIE 505

Query: 199 SYGDKDVSAYTSAIFG 214
           +        + SA+ G
Sbjct: 506 TIPFDPGFFFWSALLG 521



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 140/333 (42%), Gaps = 65/333 (19%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + +K+      ++ N  +  YS C R+  AR VFD + D +V S+N              
Sbjct: 33  LYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTHDCNVFSFN-------------- 78

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
                            +++    +   V+ A ++F++MP+   VS+  LI+ +A+ G  
Sbjct: 79  -----------------TLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDT 121

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACA-------QLGALDYGNWVYSYIQKKCIKLD 173
           + A  LF EM+   L+ +   L  +++AC        QL AL     + SY+        
Sbjct: 122 QPAFQLFLEMREAFLDMDGFTLSGIITACGINVGLIRQLHALSVVTGLDSYVS------- 174

Query: 174 SILCAALIDMYAKCGSIDLAMQVFHSYG-DKDVSAYTSAIFGLAMNGHSIEAFELFENMK 232
             +  ALI  Y+K G +  A ++FH    D+D  ++ S +     +    +A EL+  M 
Sbjct: 175 --VGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMT 232

Query: 233 SKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAG-- 290
            +G+  D  +  +VL+A +++  +  G   FH+     G        + ++DL  + G  
Sbjct: 233 VRGLIVDIFTLASVLTAFTNVQDLLGGL-QFHAKLIKSGYHQNSHVGSGLIDLYSKCGGC 291

Query: 291 ------LLEEAENFIASMPMKPDNVIWGTLLGA 317
                 + +E  N        PD V+W T++  
Sbjct: 292 MLDCRKVFDEISN--------PDLVLWNTMISG 316



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 79/210 (37%), Gaps = 36/210 (17%)

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
            L  C     L  G  +++   K  +   + L    + +Y+KC  +  A +VF    D +
Sbjct: 14  FLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTHDCN 73

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           V ++ + I   A   +   A +LF+ M      PDS+SY  +++A +  G  +  F  F 
Sbjct: 74  VFSFNTLISAYAKESYVEVAHQLFDEMP----QPDSVSYNTLIAAYARRGDTQPAFQLFL 129

Query: 265 SM---------FDVHGIKPE-------------------LDHYACMVDLL----GRAGLL 292
            M         F + GI                      LD Y  + + L     + G L
Sbjct: 130 EMREAFLDMDGFTLSGIITACGINVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFL 189

Query: 293 EEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           +EA      +    D V W +++ A   HR
Sbjct: 190 KEARRIFHWLSEDRDEVSWNSMVVAYMQHR 219


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 203/548 (37%), Positives = 316/548 (57%), Gaps = 39/548 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGE----- 57
           +KN    D+ V NSL+  Y+    ++    +FD+  D DVVSW ++I G+ +NG      
Sbjct: 446 MKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRAL 505

Query: 58  -----------------------ILEGLKLFDKMPQ------RNDVSWNSILGGLVRF-- 86
                                     GLKL   + +      R  +S   +  G+V    
Sbjct: 506 ELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLVLQNGIVDVYG 565

Query: 87  --GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
             G+VD A R+F  +  + +VSW  +IS +  NG   EAL LF  M+   +EP+S  LVS
Sbjct: 566 ECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVS 625

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           +LSA A L AL  G  ++ ++ +K   L+  L + L+DMYA+CG+++ +  VF+   +KD
Sbjct: 626 ILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKD 685

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           +  +TS I    M+G    A +LF  M+ + I+PD I+++AVL ACSH G + +G  +  
Sbjct: 686 LVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLE 745

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
           SM   + ++P  +HY C+VDLLGRA  LEEA  F+  M ++P   +W  LLGAC++H N 
Sbjct: 746 SMKYEYQLEPWPEHYVCLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNK 805

Query: 325 EMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIEL 384
           E+G+     L+E D  + G Y+L+SN+Y    + ++ EEVR  M+   +K+ PGCS IE+
Sbjct: 806 ELGEIAAQKLLEMDPENPGNYVLVSNVYAAERRWKDVEEVRMRMKASGLKKNPGCSWIEV 865

Query: 385 DGVVHEFLAGDRSHEKTQEIYQFWEEIVKKI-KNYGYNVETRSVMFDIEEEEKETVIGYH 443
              VH F+A D+SH ++ EIY    +I +K+ K  GY  +T+ V+ + +EEEK  ++  H
Sbjct: 866 GNKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKEEEKVQMLYGH 925

Query: 444 SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
           SE+LA+A+G++ T  G+ +RI KN+R+C DCH+  KL+SK F+R++ +RD   +HHF+ G
Sbjct: 926 SERLAIAYGMLTTPEGASLRITKNLRVCGDCHNFCKLISKFFERELVMRDANRFHHFKGG 985

Query: 504 SCSCLEYW 511
            CSC + W
Sbjct: 986 VCSCGDVW 993



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 115/359 (32%), Positives = 189/359 (52%), Gaps = 42/359 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K+S+  +VFV N+LI  Y+  G++ +A  +F   DD D +SWNSM++G+V+NG   E 
Sbjct: 344 VLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEA 403

Query: 62  LKLFDKM---PQRND-VSWNSILGGLVRFGSVDDACR----------------------- 94
           L+ + +M    Q+ D V+  SI+    R G+  +  +                       
Sbjct: 404 LQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDM 463

Query: 95  ------------VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
                       +F++MP + +VSW  +I+G AQNG    AL LFRE+Q   ++ +  ++
Sbjct: 464 YAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMI 523

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S+L AC+ L  +     ++SYI +K +  D +L   ++D+Y +CG++D A ++F     
Sbjct: 524 SSILLACSGLKLISSVKEIHSYIIRKGLS-DLVLQNGIVDVYGECGNVDYAARMFELIEF 582

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           KDV ++TS I     NG + EA ELF  MK  G+ PDSIS +++LSA + L  ++KG   
Sbjct: 583 KDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKG-KE 641

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            H      G   E    + +VD+  R G LE++ N    +  K D V+W +++ A  +H
Sbjct: 642 IHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNK-DLVLWTSMINAYGMH 699



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 106/361 (29%), Positives = 172/361 (47%), Gaps = 44/361 (12%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDE-SDDLDVVSWNSMINGYVRNGEIL 59
           + +K  +   VFV NS++  Y+ C  +  AR +FD   +  DVVSWNSMI+ Y  NG+ +
Sbjct: 241 LAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSI 300

Query: 60  EGLKLFDKMPQRN----------------DVSW-----------------------NSIL 80
           E L+LF +M + +                D S+                       N+++
Sbjct: 301 EALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALI 360

Query: 81  GGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
               RFG + +A  +F  M     +SW  ++SGF QNG   EAL  + EM+    +P+  
Sbjct: 361 AMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLV 420

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
            ++S+++A A+ G    G  +++Y  K  +  D  +  +L+DMYAK  S+     +F   
Sbjct: 421 AVISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKM 480

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
            DKDV ++T+ I G A NG    A ELF  ++ +GI  D +   ++L ACS L  +    
Sbjct: 481 PDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLI-SSV 539

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
              HS     G+  +L     +VD+ G  G ++ A      +  K D V W +++ +C V
Sbjct: 540 KEIHSYIIRKGLS-DLVLQNGIVDVYGECGNVDYAARMFELIEFK-DVVSWTSMI-SCYV 596

Query: 321 H 321
           H
Sbjct: 597 H 597



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/357 (27%), Positives = 164/357 (45%), Gaps = 42/357 (11%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           M+  N+    VF+   L+  Y  CG + DA  +FD      + +WN+MI  YV NGE L 
Sbjct: 140 MITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLG 199

Query: 61  GLKLFDKMP-----------------------------------QRNDVS----WNSILG 81
            L+L+ +M                                    +   VS     NSI+G
Sbjct: 200 SLELYREMRVSGIPLDACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVG 259

Query: 82  GLVRFGSVDDACRVFNQMP-KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
              +   ++ A ++F++MP K  +VSW  +IS ++ NG+  EAL LF EMQ   L PN+ 
Sbjct: 260 MYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTY 319

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
             V+ L AC     +  G ++++ + K    ++  +  ALI MYA+ G +  A  +F++ 
Sbjct: 320 TFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNM 379

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
            D D  ++ S + G   NG   EA + +  M+  G  PD ++ I++++A +  G    G 
Sbjct: 380 DDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGM 439

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
              H+    +G+  +L     +VD+  +   ++  +     MP K D V W T++  
Sbjct: 440 -QIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDK-DVVSWTTIIAG 494



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 78/181 (43%), Gaps = 14/181 (7%)

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSI-LCAALIDMYAKCGSIDLAMQVFHSYGD 202
           S+L  C    AL  G  V++++       +S+ L   L+ MY KCG +  A ++F     
Sbjct: 119 SVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPH 178

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           K +  + + I     NG  + + EL+  M+  GI  D+ ++  +L AC  L     G   
Sbjct: 179 KTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRCG--- 235

Query: 263 FHSMFDVHGIKPELDHYA------CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLG 316
                +VHG+  +  + +       +V +  +   L  A      MP K D V W +++ 
Sbjct: 236 ----AEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMIS 291

Query: 317 A 317
           A
Sbjct: 292 A 292



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 76/157 (48%), Gaps = 12/157 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++  F  +  + ++L+  Y+ CG +  +R VF+   + D+V W SMIN Y  +G     
Sbjct: 646 LIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAA 705

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMP-KRSLVSW----VVLIS 112
           + LF +M       + +++ ++L      G +++  R    M  +  L  W    V L+ 
Sbjct: 706 IDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYVCLVD 765

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
              +    +EA   ++ ++ +++EP + +  +LL AC
Sbjct: 766 LLGRANHLEEA---YQFVKGMEVEPTAEVWCALLGAC 799


>gi|357132450|ref|XP_003567843.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Brachypodium distachyon]
          Length = 868

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 198/547 (36%), Positives = 303/547 (55%), Gaps = 43/547 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + VK  FA DV   NSLIQ YS  GR+ +A  VF   +  D +SW +MI+GY +NG   +
Sbjct: 321 LAVKRGFATDVAFCNSLIQMYSSLGRMGEACTVFSRMETRDAMSWTAMISGYEKNGFPDK 380

Query: 61  GLKLFDKMPQRNDVSWNSIL--------------------------GGLVRF-------- 86
            L+++  M + N+VS + +                            G +R+        
Sbjct: 381 ALEVYALM-EVNNVSPDDVTVASALAACASLGRLDVGIKLHELATSKGFIRYIVVANALV 439

Query: 87  ------GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
                   ++ A  VF  MP + ++SW  +I+GF  N +  EAL  FR M + D++PNS 
Sbjct: 440 EMYAKSKIIEKAIEVFKYMPDKDVISWSSMIAGFCFNHKNFEALYYFRHMLA-DVKPNSV 498

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
             ++ L+ACA  G+L  G  +++++ ++ I  +  +  AL+D+Y KCG    A   F ++
Sbjct: 499 TFIAALAACAATGSLRCGKEIHAHVLRQGIASEGYVPNALLDLYVKCGQTGYAWAQFGAH 558

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
           G KDV ++   + G   +GH   A   F  M   G  PD ++++A+L  CS  G V +G+
Sbjct: 559 GTKDVVSWNIMLAGFVAHGHGDIALSFFNEMLETGEHPDEVTFVALLCGCSRAGMVSQGW 618

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
             FHSM + + I P L HYACMVDLL R G L E  NFI  MP+ PD  +WG LL  CR+
Sbjct: 619 ELFHSMTEKYSIVPNLKHYACMVDLLSRVGRLTEGYNFINRMPITPDAAVWGALLNGCRI 678

Query: 321 HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS 380
           HRN E+G+    +++E + N  G ++LLS++Y +        +VRKTMR + ++   GCS
Sbjct: 679 HRNIELGELAAKIVLELEPNDAGYHVLLSDLYADAGMWAEVSKVRKTMRVKGLEHDYGCS 738

Query: 381 LIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVI 440
            +E+ G +H FL  D SH + +EI    + I +++K  G+     S   + +E  K+ V+
Sbjct: 739 WVEVKGAIHAFLTDDESHPQIKEINDVLDGIYERMKASGF-APVESYSLEDKEVSKDDVL 797

Query: 441 GYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF 500
             HSE+LA+AFGLI T PG+ I + KN   C  CH  ++++SK+ +R+I++RD K +HHF
Sbjct: 798 CGHSERLAVAFGLINTTPGTSICVTKNQYTCESCHGILRMISKIVRREITVRDTKEFHHF 857

Query: 501 EDGSCSC 507
            DGSCSC
Sbjct: 858 RDGSCSC 864



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 109/380 (28%), Positives = 178/380 (46%), Gaps = 42/380 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V++     +V V N+L+  Y+ CG V  AR VFD     D +SWN+MI G+  N E   G
Sbjct: 221 VLRFGLGVEVDVLNALVTMYAKCGDVEAARKVFDGMSLTDCISWNAMIAGHFENHECEAG 280

Query: 62  LKLFDKM------PQRNDVSWNSILGGLV------------------------------- 84
           L+LF  M      P    ++  ++  GL+                               
Sbjct: 281 LELFLHMLEDEVEPNLMTITSVTVASGLLSDLDFAKEIHALAVKRGFATDVAFCNSLIQM 340

Query: 85  --RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
               G + +AC VF++M  R  +SW  +ISG+ +NG P +AL ++  M+  ++ P+   +
Sbjct: 341 YSSLGRMGEACTVFSRMETRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDVTV 400

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S L+ACA LG LD G  ++     K      ++  AL++MYAK   I+ A++VF    D
Sbjct: 401 ASALAACASLGRLDVGIKLHELATSKGFIRYIVVANALVEMYAKSKIIEKAIEVFKYMPD 460

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           KDV +++S I G   N  + EA   F +M +  + P+S+++IA L+AC+  G +  G   
Sbjct: 461 KDVISWSSMIAGFCFNHKNFEALYYFRHMLAD-VKPNSVTFIAALAACAATGSLRCG-KE 518

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
            H+     GI  E      ++DL  + G    A     +   K D V W  +L     H 
Sbjct: 519 IHAHVLRQGIASEGYVPNALLDLYVKCGQTGYAWAQFGAHGTK-DVVSWNIMLAGFVAHG 577

Query: 323 NAEMGQRIGNMLIESDQNHD 342
           + ++     N ++E+ ++ D
Sbjct: 578 HGDIALSFFNEMLETGEHPD 597



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 96/373 (25%), Positives = 167/373 (44%), Gaps = 42/373 (11%)

Query: 8   AYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDK 67
            + + + N+++      G    A  VF +  + DV SWN M+ GY + G + E L L+ +
Sbjct: 126 TFGLRLGNAMLSMLVRFGETWHAWKVFAKMPERDVFSWNVMVGGYGKAGFLEEALDLYHR 185

Query: 68  M---PQRNDV-SWNSIL---GGL-------------VRFG-------------------S 88
           M     R DV ++  +L   GG+             +RFG                    
Sbjct: 186 MLWAGARPDVYTFPCVLRSCGGVPDLTMGREVHAHVLRFGLGVEVDVLNALVTMYAKCGD 245

Query: 89  VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148
           V+ A +VF+ M     +SW  +I+G  +N   +  L LF  M   ++EPN   + S+  A
Sbjct: 246 VEAARKVFDGMSLTDCISWNAMIAGHFENHECEAGLELFLHMLEDEVEPNLMTITSVTVA 305

Query: 149 CAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAY 208
              L  LD+   +++   K+    D   C +LI MY+  G +  A  VF     +D  ++
Sbjct: 306 SGLLSDLDFAKEIHALAVKRGFATDVAFCNSLIQMYSSLGRMGEACTVFSRMETRDAMSW 365

Query: 209 TSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD 268
           T+ I G   NG   +A E++  M+   +SPD ++  + L+AC+ LG ++ G    H +  
Sbjct: 366 TAMISGYEKNGFPDKALEVYALMEVNNVSPDDVTVASALAACASLGRLDVGI-KLHELAT 424

Query: 269 VHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL-GACRVHRNAEMG 327
             G    +     +V++  ++ ++E+A      MP K D + W +++ G C  H+N E  
Sbjct: 425 SKGFIRYIVVANALVEMYAKSKIIEKAIEVFKYMPDK-DVISWSSMIAGFCFNHKNFEAL 483

Query: 328 QRIGNMLIESDQN 340
               +ML +   N
Sbjct: 484 YYFRHMLADVKPN 496


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 205/567 (36%), Positives = 304/567 (53%), Gaps = 59/567 (10%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFD----ESDDLDVVSWNSMINGYVRNGE 57
           V  N    DV   N+++  YS  GR  DA  +F+    E   +DVV+W++ I+GY + G 
Sbjct: 286 VFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGL 345

Query: 58  ILEGLKLFDKMP----QRNDVSWNSILGGLVRFGS------------------------- 88
             E L +  +M     + N+V+  S+L G    G+                         
Sbjct: 346 GYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGD 405

Query: 89  -----------------VDDACRVFNQM-PK-RSLVSWVVLISGFAQNGRPKEALALFRE 129
                            VD A  +F+ + PK R +V+W V+I G++Q+G   +AL L  E
Sbjct: 406 ENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSE 465

Query: 130 MQSLDLE--PNSAILVSLLSACAQLGALDYGNWVYSYI---QKKCIKLDSILCAALIDMY 184
           M   D +  PN+  +   L ACA L AL  G  +++Y    Q+  + L    C  LIDMY
Sbjct: 466 MFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNC--LIDMY 523

Query: 185 AKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYI 244
           AKCGSI  A  VF +   K+   +TS + G  M+G+  EA  +F+ M+  G   D ++ +
Sbjct: 524 AKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLL 583

Query: 245 AVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPM 304
            VL ACSH G +++G  YF+ M  V G+ P  +HYAC+VDLLGRAG L  A   I  MPM
Sbjct: 584 VVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPM 643

Query: 305 KPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEV 364
           +P  V+W   L  CR+H   E+G+     + E   NHDG Y LLSN+Y    + ++   +
Sbjct: 644 EPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRI 703

Query: 365 RKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVET 424
           R  MR + +K+ PGCS +E       F  GD++H   +EIYQ   + +++IK+ GY  ET
Sbjct: 704 RSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPET 763

Query: 425 RSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKV 484
              + D+++EEK+ ++  HSEKLALA+G++ T  G+ IRI KN+R+C DCH+A   +S++
Sbjct: 764 GFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRI 823

Query: 485 FKRKISIRDRKHYHHFEDGSCSCLEYW 511
               I +RD   +HHF++GSCSC  YW
Sbjct: 824 IDHDIILRDSSRFHHFKNGSCSCKGYW 850



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 98/335 (29%), Positives = 160/335 (47%), Gaps = 41/335 (12%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           V +    ++FV N L+  Y+ CG + +A  VF      DVVSWN+M+ GY + G   + +
Sbjct: 256 VTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAV 315

Query: 63  KLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKE 122
           +LF+KM +                           +  K  +V+W   ISG+AQ G   E
Sbjct: 316 RLFEKMQE---------------------------EKIKMDVVTWSAAISGYAQRGLGYE 348

Query: 123 ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKL-------DSI 175
           AL + R+M S  ++PN   L+S+LS CA +GAL +G  ++ Y  K  I L       +++
Sbjct: 349 ALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENM 408

Query: 176 LCAALIDMYAKCGSIDLAMQVFHSYGDK--DVSAYTSAIFGLAMNGHSIEAFELFENMKS 233
           +   LIDMYAKC  +D A  +F S   K  DV  +T  I G + +G + +A EL   M  
Sbjct: 409 VINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFE 468

Query: 234 KGIS--PDSISYIAVLSACSHLGWVEKG-FYYFHSMFDVHGIKPELDHYACMVDLLGRAG 290
           +     P++ +    L AC+ L  +  G   + +++ +     P L    C++D+  + G
Sbjct: 469 EDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVP-LFVSNCLIDMYAKCG 527

Query: 291 LLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAE 325
            + +A     +M M  + V W +L+    +H   E
Sbjct: 528 SISDARLVFDNM-MAKNEVTWTSLMTGYGMHGYGE 561



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 106/242 (43%), Gaps = 5/242 (2%)

Query: 79  ILGGLVRFGSVDDACRVFNQMPKR--SLVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136
           ++   +  G +  A  +  + P     +  W  LI  +  NG   + L LF  M SL   
Sbjct: 65  LISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWT 124

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
           P++     +  AC ++ ++  G   ++         +  +  AL+ MY++C S+  A +V
Sbjct: 125 PDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKV 184

Query: 197 FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK-GISPDSISYIAVLSACSHLGW 255
           F      DV ++ S I   A  G    A E+F  M ++ G  PD+I+ + VL  C+ LG 
Sbjct: 185 FDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGT 244

Query: 256 VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
              G    H       +   +    C+VD+  + G+++EA    ++M +K D V W  ++
Sbjct: 245 HSLG-KQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVK-DVVSWNAMV 302

Query: 316 GA 317
             
Sbjct: 303 AG 304


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 192/549 (34%), Positives = 310/549 (56%), Gaps = 39/549 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K  +  D++V   L+  Y+  G   D   VF+E    DV+ W+ MI+ Y ++ +  E 
Sbjct: 168 VLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREA 227

Query: 62  LKLFDKM------PQR---------------------------------NDVSWNSILGG 82
           ++LF +M      P +                                 N    N+++  
Sbjct: 228 VELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDV 287

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G +D++ ++F ++P R+ V+W  +I G+ Q+G   +AL+L++ M    ++ +    
Sbjct: 288 YAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTY 347

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S+L ACA L A++ G  ++S   K     D ++  ALIDMYAKCGSI  A  VF    +
Sbjct: 348 SSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSE 407

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           +D  ++ + I G +M+G   EA + F+ M+     P+ ++++++LSACS+ G ++ G  Y
Sbjct: 408 RDEISWNAMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNY 467

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F SM   +GI+P ++HY CMV LLGR+G L++A   I  +P++P+  +W  LLGAC +H 
Sbjct: 468 FKSMVQDYGIEPCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACVIHN 527

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           + ++G      +++ D   +  ++LLSNIY  T +  +   VRK M+ + +K+ PG S I
Sbjct: 528 DVDLGIMSAQQILQIDPQDEATHVLLSNIYARTRRWNSVASVRKFMKNKGVKKEPGLSWI 587

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E  G+VH F  GD SH   + I    E +  K +  GY  +  +V+ D+E++EK+  +  
Sbjct: 588 ENQGIVHYFSVGDTSHPDMKMISGMLEWLNMKTEKAGYVPDLNAVLRDVEDDEKKRHLWV 647

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSE+LALAFGLI T     IRI+KN+RIC+DCHSA+KL+SK+ +R I IRD   +HHF+D
Sbjct: 648 HSERLALAFGLIRTPSRGHIRILKNLRICTDCHSAIKLISKIVQRDIIIRDMNRFHHFQD 707

Query: 503 GSCSCLEYW 511
           G CSC +YW
Sbjct: 708 GICSCGDYW 716



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 161/351 (45%), Gaps = 41/351 (11%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           + FV  +LI  Y+VCG V  AR  FD     D+VSW  M+  Y  N    + L+LF +M 
Sbjct: 75  NAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQDSLQLFAEMR 134

Query: 70  ----QRNDVSWNSILGGLV-----------------------------------RFGSVD 90
                 N  ++  +L   +                                   +FG  +
Sbjct: 135 MVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDAN 194

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           D  RVF +MPK  ++ W  +IS +AQ+ + +EA+ LF +M+   + PN     S+L +CA
Sbjct: 195 DVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCA 254

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
            +  L  G  V+ ++ K  +  +  +  AL+D+YAKCG +D +M++F    +++   + +
Sbjct: 255 SIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNT 314

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I G   +G   +A  L++NM    +    ++Y +VL AC+ L  +E G    HS+    
Sbjct: 315 MIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELG-TQIHSLSLKT 373

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
               ++     ++D+  + G ++ A   +  M  + D + W  ++    +H
Sbjct: 374 IYDKDVVVGNALIDMYAKCGSIKNAR-LVFDMLSERDEISWNAMISGYSMH 423



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 144/320 (45%), Gaps = 49/320 (15%)

Query: 39  DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQR----NDVSWNSILGGLVRF-------- 86
           D + VS+ ++I GYV++ ++ E + LF ++ +     N   + +IL  LV          
Sbjct: 3   DRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELAYS 62

Query: 87  ---------------------------GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGR 119
                                      GSV+ A + F+ +  + +VSW  +++ +A+N R
Sbjct: 63  LHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDR 122

Query: 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
            +++L LF EM+ +   PN      +L AC  L A   G  V+  + K C ++D  +   
Sbjct: 123 FQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVG 182

Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
           L+D+Y K G  +  ++VF      DV  ++  I   A +  S EA ELF  M+   + P+
Sbjct: 183 LLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPN 242

Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA----CMVDLLGRAGLLEEA 295
             ++ +VL +C+ +  ++ G          H +K  LD        ++D+  + G L+ +
Sbjct: 243 QFTFASVLQSCASIENLQLG-----KQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNS 297

Query: 296 ENFIASMPMKPDNVIWGTLL 315
                 +P + + V W T++
Sbjct: 298 MKLFMELPNR-NEVTWNTMI 316



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 104/223 (46%), Gaps = 14/223 (6%)

Query: 99  MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
           MP R+ VS+V LI G+ Q+ +  E + LF  +     E N  +  ++L     +   +  
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
             +++ I K   + ++ +  ALID YA CGS++ A Q F +   KD+ ++T  +   A N
Sbjct: 61  YSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAEN 120

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG--IKP-- 274
               ++ +LF  M+  G +P+  ++  VL AC        G   F     VHG  +K   
Sbjct: 121 DRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACI-------GLEAFSVGKSVHGCVLKTCY 173

Query: 275 ELDHY--ACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
           E+D Y    ++DL  + G   +       MP K D + W  ++
Sbjct: 174 EMDLYVGVGLLDLYTKFGDANDVLRVFEEMP-KHDVIPWSFMI 215


>gi|225432322|ref|XP_002276230.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g15720-like [Vitis vinifera]
          Length = 606

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 199/554 (35%), Positives = 302/554 (54%), Gaps = 44/554 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K+ F  D F  N LI  Y    R  DA  +F+E  + +V+S+ S++ G+++ G     
Sbjct: 53  VLKSGFLNDTFTTNHLINSYVRIRRTNDASQLFEEMREPNVISFTSLMAGFIKVGRPKSA 112

Query: 62  LKLFDKM---------------------------------------PQRNDVSWNSILGG 82
           L +F KM                                        Q N V  +S++  
Sbjct: 113 LLIFCKMLESWVLPNAFTFATVVNACSMLADLRTGQKIHSHVEMFGVQCNLVVCSSLIDM 172

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE-PNSAI 141
             +  +VDDA RVF+ M  R++VSW  +I+ + QN   + AL LFRE   L L  PN  +
Sbjct: 173 YGKCNNVDDARRVFDGMDYRNVVSWTSMITAYGQNALGECALQLFREFNGLPLSSPNHFM 232

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           L S+++ACA LG L  G   ++ + ++  + + ++ +AL+DMYAKCG I  + +VF    
Sbjct: 233 LASVINACASLGRLVSGKVAHAAVIRRGHESNDVVASALVDMYAKCGCIGYSDKVFRRIP 292

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
           D  V  YTS I G A  G    + ++F+ M  + I P+ ++++ VL ACSH G V+ G  
Sbjct: 293 DPSVIPYTSMIVGAAKYGLGKFSLDIFKEMLDRRIKPNDVTFVGVLHACSHSGLVDDGLE 352

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDN--VIWGTLLGACR 319
           Y HSM   HG+ P+  HY C+VD+LGR G L+EA     S+ ++PD   ++WGTLL A R
Sbjct: 353 YLHSMHKKHGVVPDTKHYTCVVDMLGRTGRLDEAHQLAKSIQVEPDQGALLWGTLLSASR 412

Query: 320 VHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGC 379
           ++   ++       LIES+Q     Y+ +SN Y    K EN   +R  M+   + + PGC
Sbjct: 413 LYGRVDIAVEASKWLIESNQQVAAAYVTMSNTYAMAGKWENVHSIRYEMKHYGVYKEPGC 472

Query: 380 SLIELDGVVHEFLAGDRSH-EKTQEIYQFWEEIVKKIKNYGYNVETRS-VMFDIEEEEKE 437
           S +E+    + F AGD S   +  E+     E+ +++K  GY   +R  V  D+EEE KE
Sbjct: 473 SWVEIRDSAYVFYAGDVSLCARGSEVASLLRELERRMKERGYVGGSRGLVSIDVEEEAKE 532

Query: 438 TVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHY 497
            ++G HSE+LALAFGLI    G  IR++KN+R+C DCH A KL+S++ +R   +RD   +
Sbjct: 533 EIVGLHSERLALAFGLISIPKGVTIRVMKNLRMCRDCHEAFKLISEIVERDFVVRDVNRF 592

Query: 498 HHFEDGSCSCLEYW 511
           HHFE+GSC+C ++W
Sbjct: 593 HHFENGSCTCRDFW 606


>gi|302790389|ref|XP_002976962.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
 gi|300155440|gb|EFJ22072.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
          Length = 1108

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 192/538 (35%), Positives = 294/538 (54%), Gaps = 42/538 (7%)

Query: 13   VKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM---- 68
            ++ +LI  +  C  +  AR VF+E D  DVVSW +M++    N +  E   LF +M    
Sbjct: 574  LETALISMHGRCRELEQARSVFNEMDHGDVVSWTAMVSATAENRDFKEVHNLFRRMQLEG 633

Query: 69   --PQRNDVSW---------------------------------NSILGGLVRFGSVDDAC 93
              P +  ++                                  N++L      G   +A 
Sbjct: 634  VIPDKFTLATTLDTCLASTTLGLGKVIHACVTEIGLEADIAVENALLNMYSNCGDWREAL 693

Query: 94   RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153
              F  M  R LVSW ++ + +AQ G  KEA+ LFR+MQ   ++P+     + L+      
Sbjct: 694  SFFETMKARDLVSWNIMSAAYAQAGLAKEAVLLFRQMQLEGVKPDKLTFSTTLNVSGGSA 753

Query: 154  ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIF 213
             +  G   ++   +  +  D  +   L+ +YAKCG +D AM +F    D  V    + I 
Sbjct: 754  LVSDGKLFHALAAESGLDSDVSVATGLVKLYAKCGKLDEAMSLFRGACDWTVVLLNAIIG 813

Query: 214  GLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIK 273
             LA +G S EA ++F  M+ +G+ PD  + ++++SAC H G VE+G   F +M +  GI 
Sbjct: 814  ALAQHGFSEEAVKMFWKMQQEGVRPDVATLVSIISACGHAGMVEEGCSSFLTMKEYFGIS 873

Query: 274  PELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNM 333
            P L+HYAC VDLLGRAG LE AE  I  MP + + ++W +LLG C++  +AE+G+R    
Sbjct: 874  PTLEHYACFVDLLGRAGQLEHAEQIIRKMPFEDNTLVWTSLLGTCKLQGDAELGERCAQR 933

Query: 334  LIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLA 393
            ++E D ++   +++LSNIY  T K ++A+  RK M    +K APG S  E+   VHEF+A
Sbjct: 934  ILELDPHNSAAHVVLSNIYCATGKWKDADVDRKKMLDENVKNAPGMSWFEIGKQVHEFVA 993

Query: 394  GDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGL 453
            GDRSH KT EIY   +++   ++  GY  +      D+E+E KE  +GYHSE++A+AFGL
Sbjct: 994  GDRSHPKTDEIYVVLDKLELLMRRAGYEADKG---LDVEDELKEKALGYHSERIAIAFGL 1050

Query: 454  ICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            I T P + ++IVKN+R+C DCH+A K +S V  R+I +RD   +HHF +G+CSC + W
Sbjct: 1051 IATPPETTLKIVKNLRVCGDCHTATKYISMVMGREIIVRDSLRFHHFSNGTCSCKDCW 1108



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 154/365 (42%), Gaps = 51/365 (13%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++        +F+ N LI  Y  CG + +A  +F + ++ +VVSW ++I+   + G    
Sbjct: 50  LIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIFSKMEERNVVSWTALISANAQCGAFAR 109

Query: 61  GLKLFDKMPQRNDVS-----------------------------W--------------- 76
              LF  M   +  +                             W               
Sbjct: 110 AFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIGRSIHAMIWELGLERASTTATLVG 169

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGR-PKEALALFREMQSLDL 135
           N+++    + GS++DA  VF  +P++ +VSW  +   +AQ  R   +AL +FREM    L
Sbjct: 170 NAMINMYAKCGSLEDAIAVFLAIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPL 229

Query: 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ 195
            PN    ++ L AC    +L  G W++S + +  +  D +   ALI+MY KCG  + A  
Sbjct: 230 APNVITFITALGACT---SLRDGTWLHSLLHEASLGFDPLASNALINMYGKCGDWEGAYS 286

Query: 196 VFHSYGDK---DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSH 252
           VF +   +   D+ ++ + I      G   +A  +F  ++ +G+ P+S++ I +L+A + 
Sbjct: 287 VFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAA 346

Query: 253 LGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWG 312
            G        FH      G   ++     ++ +  + G    A      +  K D + W 
Sbjct: 347 SGVDFGAARGFHGRIWESGYLRDVVIGNAIISMYAKCGFFSAAWAVFRRIRWKCDVISWN 406

Query: 313 TLLGA 317
           T+LGA
Sbjct: 407 TMLGA 411



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 157/358 (43%), Gaps = 59/358 (16%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEIL-EGLKLFDKM- 68
             V N++I  Y+ CG + DA  VF    + DVVSW +M   Y +      + L++F +M 
Sbjct: 166 TLVGNAMINMYAKCGSLEDAIAVFLAIPEKDVVSWTAMAGAYAQERRFYPDALRIFREML 225

Query: 69  ------------------PQRNDVSW-----------------NSILGGLVRFGSVDDAC 93
                                 D +W                 N+++    + G  + A 
Sbjct: 226 LQPLAPNVITFITALGACTSLRDGTWLHSLLHEASLGFDPLASNALINMYGKCGDWEGAY 285

Query: 94  RVFNQMPKRS---LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
            VF  M  R    LVSW  +IS   + GR  +A+A+FR ++   + PNS  L+++L+A A
Sbjct: 286 SVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALA 345

Query: 151 QLGALDYGN--------WVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
             G +D+G         W   Y++      D ++  A+I MYAKCG    A  VF     
Sbjct: 346 ASG-VDFGAARGFHGRIWESGYLR------DVVIGNAIISMYAKCGFFSAAWAVFRRIRW 398

Query: 203 K-DVSAYTSAIFGLAMNGHSI-EAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
           K DV ++ + + G + +  S  +    F +M   GI P+ +S+IA+L+ACS+   ++ G 
Sbjct: 399 KCDVISWNT-MLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGR 457

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDN-VIWGTLLGA 317
                +        E      +V + G+ G + EAE     MP+   + V W  +LGA
Sbjct: 458 KIHSLILTRRRDYVESSVATMLVSMYGKCGSISEAELVFKEMPLPSRSLVTWNVMLGA 515



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 100/407 (24%), Positives = 163/407 (40%), Gaps = 76/407 (18%)

Query: 6   SFAYDVFVKNSLIQFYSVCGRVRDARWVFD---ESDDLDVVSWNSMINGYVRNGEILEGL 62
           S  +D    N+LI  Y  CG    A  VF       +LD+VSWN+MI+  V  G   + +
Sbjct: 260 SLGFDPLASNALINMYGKCGDWEGAYSVFKAMASRQELDLVSWNAMISASVEAGRHGDAM 319

Query: 63  KLFDKMP----QRNDVSWNSILGGL----VRFGSVDD-ACRVFNQMPKRSLVSWVVLISG 113
            +F ++     + N V+  +IL  L    V FG+      R++     R +V    +IS 
Sbjct: 320 AIFRRLRLEGMRPNSVTLITILNALAASGVDFGAARGFHGRIWESGYLRDVVIGNAIISM 379

Query: 114 FAQNGRPKEALALFRE--------------------------------MQSLDLEPNSAI 141
           +A+ G    A A+FR                                 M    ++PN   
Sbjct: 380 YAKCGFFSAAWAVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVS 439

Query: 142 LVSLLSACAQLGALDYGNWVYSYI-QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH-- 198
            +++L+AC+   ALD+G  ++S I  ++   ++S +   L+ MY KCGSI  A  VF   
Sbjct: 440 FIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSISEAELVFKEM 499

Query: 199 SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS------- 251
               + +  +   +   A N  S EAF     M   G+ PD++S+ +VLS+C        
Sbjct: 500 PLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFTSVLSSCYCSQEAQV 559

Query: 252 -HLGWVEKGFYYF---HSMFDVHG----------IKPELDH-----YACMVDLLGRAGLL 292
             +  +E G+       ++  +HG          +  E+DH     +  MV         
Sbjct: 560 LRMCILESGYRSACLETALISMHGRCRELEQARSVFNEMDHGDVVSWTAMVSATAENRDF 619

Query: 293 EEAENFIASMPMK---PDNVIWGTLLGACRVHRNAEMGQRIGNMLIE 336
           +E  N    M ++   PD     T L  C       +G+ I   + E
Sbjct: 620 KEVHNLFRRMQLEGVIPDKFTLATTLDTCLASTTLGLGKVIHACVTE 666



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 152/360 (42%), Gaps = 55/360 (15%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESD-DLDVVSWNSMING----------- 51
           ++ +  DV + N++I  Y+ CG    A  VF       DV+SWN+M+             
Sbjct: 363 ESGYLRDVVIGNAIISMYAKCGFFSAAWAVFRRIRWKCDVISWNTMLGASEDRKSFGKVV 422

Query: 52  -----------------------YVRNGEILE-GLKLFDK-MPQRNDVSWNSILGGLV-- 84
                                     N E L+ G K+    + +R D   +S+   LV  
Sbjct: 423 NTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSM 482

Query: 85  --RFGSVDDACRVFNQMP--KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
             + GS+ +A  VF +MP   RSLV+W V++  +AQN R KEA     EM    + P++ 
Sbjct: 483 YGKCGSISEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDAL 542

Query: 141 ILVSLLSA--CAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH 198
              S+LS+  C+Q   +     + S  +  C++       ALI M+ +C  ++ A  VF+
Sbjct: 543 SFTSVLSSCYCSQEAQVLRMCILESGYRSACLE------TALISMHGRCRELEQARSVFN 596

Query: 199 SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEK 258
                DV ++T+ +   A N    E   LF  M+ +G+ PD  +    L  C  L     
Sbjct: 597 EMDHGDVVSWTAMVSATAENRDFKEVHNLFRRMQLEGVIPDKFTLATTLDTC--LASTTL 654

Query: 259 GF-YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
           G     H+     G++ ++     ++++    G   EA +F  +M  + D V W  +  A
Sbjct: 655 GLGKVIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKAR-DLVSWNIMSAA 713



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 106/246 (43%), Gaps = 42/246 (17%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM- 68
           D+ V+N+L+  YS CG  R+A   F+     D+VSWN M   Y + G   E + LF +M 
Sbjct: 672 DIAVENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAYAQAGLAKEAVLLFRQMQ 731

Query: 69  -----PQRNDVSWN-----------------------------SILGGLVRF----GSVD 90
                P +   S                               S+  GLV+     G +D
Sbjct: 732 LEGVKPDKLTFSTTLNVSGGSALVSDGKLFHALAAESGLDSDVSVATGLVKLYAKCGKLD 791

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           +A  +F      ++V    +I   AQ+G  +EA+ +F +MQ   + P+ A LVS++SAC 
Sbjct: 792 EAMSLFRGACDWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQEGVRPDVATLVSIISACG 851

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSIL--CAALIDMYAKCGSIDLAMQVFHSYGDKDVSAY 208
             G ++ G   +    K+   +   L   A  +D+  + G ++ A Q+      +D +  
Sbjct: 852 HAGMVEEGCSSF-LTMKEYFGISPTLEHYACFVDLLGRAGQLEHAEQIIRKMPFEDNTLV 910

Query: 209 TSAIFG 214
            +++ G
Sbjct: 911 WTSLLG 916



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 7/180 (3%)

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            +LL +C     L  G   +  I    ++    L   LI+MY +CGS++ A  +F    +
Sbjct: 29  TALLQSCVDSNDLAKGKHAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIFSKMEE 88

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENM-KSKGISPDSISYIAVLSACSHLGWVEKGFY 261
           ++V ++T+ I   A  G    AF LF  M      +P+S + +A+L+AC++   +  G  
Sbjct: 89  RNVVSWTALISANAQCGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIG-R 147

Query: 262 YFHSMFDVHGIKPELDHYA----CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
             H+M    G++            M+++  + G LE+A     ++P K D V W  + GA
Sbjct: 148 SIHAMIWELGLERASTTATLVGNAMINMYAKCGSLEDAIAVFLAIPEK-DVVSWTAMAGA 206


>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
          Length = 562

 Score =  362 bits (929), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 189/552 (34%), Positives = 310/552 (56%), Gaps = 42/552 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVC--GRVRDARWVFDESDDLDVVSWNSMINGYVRNGEIL 59
           ++K     D F  ++L+   ++   G +  A  +F + D+     +N+M+ G+V++    
Sbjct: 11  ILKXGLFXDSFCASNLVATCALSDWGSMDYACSIFRQMDEPGSFZFNTMMRGHVKDMNTE 70

Query: 60  EGLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDA----------------------- 92
           E L  + +M +R    ++ ++ ++L    R  +V++                        
Sbjct: 71  EALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVFVQNSLI 130

Query: 93  ------------CRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDL-EPNS 139
                       C VF QM +RS+ SW  LI+  A  G   + L L  +M +        
Sbjct: 131 SMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEE 190

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
           +ILVS+LSAC  LGALD G  V+ ++ +    L+ I+  +LI+MY KCG +   M +F  
Sbjct: 191 SILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGXLYKGMCLFQK 250

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
              K+  +Y+  I GLAM+G+  E   +F  M  +G+ PD I Y+ VL+ACSH G V++G
Sbjct: 251 MAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEG 310

Query: 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACR 319
              F+ M   HGI+P + HY CMVDL+GRAG ++EA   I SMPM+P++V+W +LL A +
Sbjct: 311 LQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASK 370

Query: 320 VHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGC 379
           VH N + G+     L + D      Y++LSN+Y +  + E+    R  M  + + + PG 
Sbjct: 371 VHNNLQAGEIAAKQLFKLDSQKASDYVVLSNMYAQAQRWEDVARTRTNMFSKGLSQRPGF 430

Query: 380 SLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETV 439
           SL+E+   +H F++ D  H +++ +Y+   ++  ++K  GY  +T  V+ D++EEEK+  
Sbjct: 431 SLVEVKRKMHRFVSQDAGHPQSESVYEMLYQMEWQLKFEGYXPDTTQVLCDVDEEEKKQR 490

Query: 440 IGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHH 499
           +  HS+KLA+A+ LI T  GS +RIV+N+R+C+DCH+  KL+S +F R+I++RDR  +HH
Sbjct: 491 LSGHSQKLAIAYALIHTSQGSPVRIVRNLRMCNDCHTYTKLISIIFDREITVRDRHRFHH 550

Query: 500 FEDGSCSCLEYW 511
           F+DG+CSC +YW
Sbjct: 551 FKDGACSCRDYW 562


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  362 bits (929), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 191/549 (34%), Positives = 303/549 (55%), Gaps = 40/549 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGE---- 57
           + +   +++  +   L+  Y +C  + +A  +FD     ++  WN MI GY  NG     
Sbjct: 27  ICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRISKRNLFLWNVMIRGYAWNGPYELA 86

Query: 58  ---------------------ILEGLKLFDKMPQRNDVSWNSILGGL------------- 83
                                +L+       M +   +  + I  GL             
Sbjct: 87  ISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLESDVFVGAALIDM 146

Query: 84  -VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G V+ A +VF+++ +R +V W  +++ ++QNG+P E+LAL R M    L+P     
Sbjct: 147 YAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTF 206

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           V  ++A A  G L  G  ++ Y  +   + +  +  AL+DMYAK GS+++A  +F    +
Sbjct: 207 VISIAASADNGLLPQGKELHGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEE 266

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           K V ++ + I G AM+GH+ EA +LF+ MK K + PD I+++ VL+ACSH G + +G  +
Sbjct: 267 KRVVSWNAMITGYAMHGHANEALDLFKEMKGK-VLPDHITFVGVLAACSHGGLLNEGKMH 325

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F SM     I P + HY CM+DLLG  G LEEA   I  M ++PD  +WG LL +C++H 
Sbjct: 326 FRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIMEMRVEPDAGVWGALLHSCKIHG 385

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           N EMG+     L+E + +  G Y++LSN+Y +  K +    +R  M  + +K++  CS I
Sbjct: 386 NVEMGELALEKLVELEPDDGGNYVILSNMYAQAGKWDGVARLRDLMMNKGLKKSIACSWI 445

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E+   VH FL+ D SH K++ IY   +   K +K  GY  +  SV  D+E++EK  ++  
Sbjct: 446 EVGNKVHAFLSEDTSHPKSEAIYAELKRTGKLMKEAGYAPQVGSVFHDVEDDEKVDMVSC 505

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSE+LA+AFGLI T  G+ + I+KN+RIC DCH A+K +SK+ +R+I+IRD   YHHF+D
Sbjct: 506 HSERLAIAFGLISTSAGTKLLIIKNLRICEDCHVAIKFISKITEREITIRDVNRYHHFKD 565

Query: 503 GSCSCLEYW 511
           G CSC ++W
Sbjct: 566 GVCSCGDFW 574



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 83/174 (47%), Gaps = 2/174 (1%)

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           SLL +C    A++ G  +++ I +  I  + +L   L+++Y  C S+  A  +F     +
Sbjct: 6   SLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRISKR 65

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           ++  +   I G A NG    A  L+  M+  G+ PD  ++  VL ACS L  +E+G    
Sbjct: 66  NLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEG-KKI 124

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
           H      G++ ++   A ++D+  + G +E A      +  + D V W ++L  
Sbjct: 125 HKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDER-DVVCWNSMLAT 177


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 196/549 (35%), Positives = 306/549 (55%), Gaps = 39/549 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V K  F  DV V N+L+  Y   G V D   +++   D D++SWN+ ++G    G     
Sbjct: 441 VWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRP 500

Query: 62  LKLFDKMPQR----NDVSWNSILGGL-----VRFGS------------------------ 88
           L +F  M +     N  ++ SILG       V +G                         
Sbjct: 501 LTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDM 560

Query: 89  ------VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
                 ++DA   FN++  R L +W V+I+ +AQ  + ++AL  FR+MQ   ++PN   L
Sbjct: 561 YAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTL 620

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
              LS C+ L +L+ G  ++S + K     D  + +AL+DMYAKCG ++ A  +F +   
Sbjct: 621 AGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIR 680

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           +D  A+ + I G A NG   +A   F  M  +GISPD +++  +LSACSH G VE+G  +
Sbjct: 681 RDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEH 740

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F+SM+   GI P +DH ACMVD+LGR G  +E E+FI  M +  + +IW T+LGA ++H 
Sbjct: 741 FNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHN 800

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           N  +G++  N L E     +  YILLSNI+    + ++ + VR  M  + +K+ PGCS +
Sbjct: 801 NLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWV 860

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E +G VH F++ D SH + QEI+   +E+ +++ +  Y  +T  V+ ++ E EK+  + +
Sbjct: 861 EANGQVHTFVSHDYSHPQIQEIHLKLDELDRELASIQYVPKTEYVLHNVGETEKKENLRF 920

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSE+LAL F LI T     IRI KN+RIC DCH  MK +S +  ++I +RD + +HHF++
Sbjct: 921 HSERLALGFALISTSSEKKIRIFKNLRICRDCHDVMKHISSITNQEIVVRDVRRFHHFKN 980

Query: 503 GSCSCLEYW 511
           G+CSC ++W
Sbjct: 981 GACSCNDFW 989



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 117/490 (23%), Positives = 213/490 (43%), Gaps = 54/490 (11%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +++K  +  + F+   L+  YS CG   DA  VF      D+V W+++I    + G+  E
Sbjct: 339 LIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEE 398

Query: 61  GLKLF------DKMPQRNDVS----------------------W-----------NSILG 81
            +KLF      D +P +  +                       W           N+++ 
Sbjct: 399 SIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVT 458

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
             ++ G V D  +++  M  R L+SW   +SG    G     L +F  M      PN   
Sbjct: 459 MYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYT 518

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
            +S+L +C+ L  + YG  V+++I K  +  ++ +C ALIDMYAKC  ++ A   F+   
Sbjct: 519 FISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLS 578

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
            +D+  +T  I   A      +A   F  M+ +G+ P+  +    LS CS L  +E G  
Sbjct: 579 VRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGG-Q 637

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
             HSM    G   ++   + +VD+  + G +EEAE    ++ ++ D + W T++  C   
Sbjct: 638 QLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEAL-IRRDTIAWNTII--CGYA 694

Query: 322 RNAEMGQRIG--NMLIESDQNHDGRYI--LLSNIYVETLKGENAEEVRKTMRKRKIK-RA 376
           +N +  + +    M+++   + DG     +LS    + L  E  E      R   I    
Sbjct: 695 QNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTV 754

Query: 377 PGCS-LIELDGVVHEFLAGDRSHEKTQ--EIYQFWEEIVKKIK---NYGYNVETRSVMFD 430
             C+ ++++ G V +F   +   +K Q  +    WE ++   K   N     +  + +F+
Sbjct: 755 DHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFE 814

Query: 431 IEEEEKETVI 440
           ++ EE+ + I
Sbjct: 815 LQPEEESSYI 824



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 154/330 (46%), Gaps = 48/330 (14%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D+FV ++L+  Y+ CG +  A  +F    + + V+WN ++NGY + G++   LKLF  M 
Sbjct: 247 DLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMM 306

Query: 70  QR----NDVSWNSILGG--------------------------LVRFGSVD--------- 90
           +     N+ +  ++L G                           +  G VD         
Sbjct: 307 ELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAI 366

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           DA  VF  + K  +V W  LI+   Q G+ +E++ LF  M+  D  PN   + SLLSA  
Sbjct: 367 DAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAAT 426

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
             G L YG  +++ + K   + D  +  AL+ MY K G +    +++ S  D+D+ ++ +
Sbjct: 427 NTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNA 486

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            + GL   G       +F +M  +G  P+  ++I++L +CS L  V  G          H
Sbjct: 487 YLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYG-----RQVHAH 541

Query: 271 GIKPELD--HYAC--MVDLLGRAGLLEEAE 296
            IK +LD  ++ C  ++D+  +   LE+A+
Sbjct: 542 IIKNQLDDNNFVCTALIDMYAKCMYLEDAD 571



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 155/356 (43%), Gaps = 41/356 (11%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++VK+    D  +  SL+  Y+ C     AR V  +  D DVVSW ++I G V  G   +
Sbjct: 137 LIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFAND 196

Query: 61  GLKLFDKMPQRN--------------------------------------DVSWNSILGG 82
            + LF +M                                          D+   S L  
Sbjct: 197 SIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVD 256

Query: 83  L-VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
           L  + G ++ A ++F  MP+++ V+W VL++G+AQ G     L LF  M  LD++ N   
Sbjct: 257 LYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFT 316

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           L ++L  CA    L  G  ++S I K   + +  +   L+DMY+KCG    A+ VF +  
Sbjct: 317 LTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIK 376

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
             D+  +++ I  L   G S E+ +LF  M+     P+  +  ++LSA ++ G ++ G  
Sbjct: 377 KPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYG-Q 435

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
             H+    +G + ++     +V +  + G + +      SM +  D + W   L  
Sbjct: 436 SIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESM-VDRDLISWNAYLSG 490



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 84/174 (48%), Gaps = 2/174 (1%)

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           S+L  CA   +L     ++  I K  I  DS L  +L+++YAKC     A  V     D+
Sbjct: 117 SMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDR 176

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           DV ++T+ I GL   G + ++  LF+ M+++GI P+  +    L ACS    ++ G    
Sbjct: 177 DVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMH 236

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
              F + G+  +L   + +VDL  + G +E A      MP + D V W  LL  
Sbjct: 237 AQAFKL-GLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQND-VTWNVLLNG 288


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 203/547 (37%), Positives = 317/547 (57%), Gaps = 48/547 (8%)

Query: 10   DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGE--ILEGLKLFDK 67
            DV V N+L+  Y  CG V++ +  F    D D VSWNS+I G + + E  +LE ++ F  
Sbjct: 524  DVSVSNALLALYGECGYVKECQKAFSLMLDYDHVSWNSLI-GALADSEPSMLEAVESFLV 582

Query: 68   MPQR----NDVSWNSILGG-----------------LVRFGSVDDACR------------ 94
            M +     N V++ +IL                   L R  + D A              
Sbjct: 583  MMRAGWDPNRVTFITILAAVSSLSLHELGKQIHALVLKRNVAADTAIENALLACYGKCGD 642

Query: 95   ------VFNQMPKRS-LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLS 147
                  +F++M  R   VSW  +ISG+  N    +A+ +   M       +     ++LS
Sbjct: 643  MGYCENIFSRMSDRQDEVSWNSMISGYIHNELLPKAMDMVWFMMQKGQRLDGFTFATVLS 702

Query: 148  ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSA 207
            ACA +  L+ G  V+    + C++ D ++ +AL+DMYAKCG ID A + F     +++ +
Sbjct: 703  ACATVATLERGMEVHGCSVRACLESDIVIGSALVDMYAKCGRIDYASRFFEMMPARNLYS 762

Query: 208  YTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMF 267
            + S I G A +GH  ++ +LF  MK +G  PD ++++ VLSACSH G V +GF +F SM 
Sbjct: 763  WNSMISGYARHGHGTKSLDLFAQMKLQGPLPDHVTFVGVLSACSHAGLVNEGFSHFDSMS 822

Query: 268  DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA-CRVH-RNAE 325
            +++G+ P ++H++CMVDLLGR G L + E+F+  MP+KP+ +IW T+LGA CR + RN  
Sbjct: 823  EIYGLAPRMEHFSCMVDLLGRVGELNKMEDFLNQMPVKPNVLIWRTVLGACCRANGRNTA 882

Query: 326  MGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELD 385
            +G+R   ML+E +  +   YILLSN+Y    K ++  + R  MRK  +K+  GCS + + 
Sbjct: 883  LGRRAAEMLLEMEPTNAVNYILLSNMYASGGKWDDVAKTRVAMRKAFVKKEAGCSWVTMK 942

Query: 386  GVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSE 445
              VH F+AGD+SH +   IY+  +E+  K++  GY  ETR  ++D+E E KE ++ YHSE
Sbjct: 943  DGVHVFVAGDKSHPEKDLIYEKLKELNGKMRLAGYIPETRFALYDLEGESKEELLSYHSE 1002

Query: 446  KLALAFGLICTKPGSV-IRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGS 504
            K+A+AF  + T+P  + IRI+KN+R+C DCHSA K +S++ +R+I +RD   +HHFE+G 
Sbjct: 1003 KIAVAF--VLTRPSKMPIRILKNLRVCGDCHSAFKYISQIVERQIVLRDSNRFHHFENGK 1060

Query: 505  CSCLEYW 511
            CSC ++W
Sbjct: 1061 CSCGDFW 1067



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 102/373 (27%), Positives = 171/373 (45%), Gaps = 64/373 (17%)

Query: 1   MVVKNSFAYDVFVKNSLIQFY-SVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEIL 59
           ++ K  +  DV   N LI  Y +  G V  AR  FD     ++VS NSMI+ Y + G+ +
Sbjct: 201 LMSKTQYVNDVTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAV 260

Query: 60  EGLKLFDKMPQR--------NDVSWNSIL------------------------------- 80
               +F  M +         N+ ++ S++                               
Sbjct: 261 SAFDIFSTMQKEVMGDGLKPNEYTFGSLISATCSLANSGLVLLEQLLTRVEKSGFLHDLY 320

Query: 81  ------GGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQ-SL 133
                  G  + GS+  A  +F +M  R++VS   LI G  +  R +EA+ LF EM+ S+
Sbjct: 321 VGSALVSGFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKDSV 380

Query: 134 DLEPNSAILVSLLSACAQLGALD----YGNWVYSY-IQKKCIKLDSILCAALIDMYAKCG 188
           +L PNS +++  L+A  +   L+     G+ V+++ I+   +     +   LI+MYAKCG
Sbjct: 381 ELNPNSYMII--LTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCG 438

Query: 189 SIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248
           +I+ A  VF    +KD   + S I GL  N   +EA + F+ M+   + P + + I+ LS
Sbjct: 439 AINDACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALS 498

Query: 249 ACSHLGWVEKGFYYFHSMFDVHGIKPELDH----YACMVDLLGRAGLLEEAENFIASMPM 304
           +C+ LGW+  G           G+K  LD        ++ L G  G ++E +   + M +
Sbjct: 499 SCASLGWISVG-----EQLHCEGLKLGLDLDVSVSNALLALYGECGYVKECQKAFSLM-L 552

Query: 305 KPDNVIWGTLLGA 317
             D+V W +L+GA
Sbjct: 553 DYDHVSWNSLIGA 565



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 164/358 (45%), Gaps = 45/358 (12%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V K+ F +D++V ++L+  ++  G +  A+ +F +    +VVS N +I G VR     E 
Sbjct: 310 VEKSGFLHDLYVGSALVSGFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEA 369

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRF----------------------------------- 86
           ++LF +M    +++ NS +  L  F                                   
Sbjct: 370 VELFMEMKDSVELNPNSYMIILTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNG 429

Query: 87  --------GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPN 138
                   G+++DAC VF  M  +  V+W  +I+G  QN +  EA+  F+EM+  +L P+
Sbjct: 430 LINMYAKCGAINDACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPS 489

Query: 139 SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH 198
           +  ++S LS+CA LG +  G  ++    K  + LD  +  AL+ +Y +CG +    + F 
Sbjct: 490 NFTMISALSSCASLGWISVGEQLHCEGLKLGLDLDVSVSNALLALYGECGYVKECQKAFS 549

Query: 199 SYGDKDVSAYTSAIFGLAMNGHS-IEAFELFENMKSKGISPDSISYIAVLSACSHLGWVE 257
              D D  ++ S I  LA +  S +EA E F  M   G  P+ +++I +L+A S L   E
Sbjct: 550 LMLDYDHVSWNSLIGALADSEPSMLEAVESFLVMMRAGWDPNRVTFITILAAVSSLSLHE 609

Query: 258 KGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
            G    H++     +  +      ++   G+ G +   EN  + M  + D V W +++
Sbjct: 610 LG-KQIHALVLKRNVAADTAIENALLACYGKCGDMGYCENIFSRMSDRQDEVSWNSMI 666



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 90/307 (29%), Positives = 134/307 (43%), Gaps = 51/307 (16%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           + KN F  D+F+ N+LI  Y+  G +   R VFDE    ++VSW+ +I+GY RN    E 
Sbjct: 99  LFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTRNRMPNEA 158

Query: 62  LKLFDK------MPQR----------------------------------NDVSWNSILG 81
            +LF K      MP                                    NDV+ +++L 
Sbjct: 159 CELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDVTASNVLI 218

Query: 82  GLV--RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL----DL 135
            +     G VD A R F+ +  R+LVS   +IS + Q G    A  +F  MQ       L
Sbjct: 219 SMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQKEVMGDGL 278

Query: 136 EPNSAILVSLLSACAQLG--ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLA 193
           +PN     SL+SA   L    L     + + ++K     D  + +AL+  +AK GSI  A
Sbjct: 279 KPNEYTFGSLISATCSLANSGLVLLEQLLTRVEKSGFLHDLYVGSALVSGFAKAGSIGYA 338

Query: 194 MQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMK-SKGISPDSISYIAVLSACSH 252
             +F     ++V +    I GL       EA ELF  MK S  ++P+  SY+ +L+A   
Sbjct: 339 KNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKDSVELNPN--SYMIILTAFPE 396

Query: 253 LGWVEKG 259
              +E G
Sbjct: 397 FHVLENG 403



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 128/283 (45%), Gaps = 12/283 (4%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136
           N+++    R G +    +VF++MP R+LVSW  LISG+ +N  P EA  LFR+M S    
Sbjct: 112 NTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTRNRMPNEACELFRKMVSDGFM 171

Query: 137 PNSAILVSLLSACAQLG--ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC-GSIDLA 193
           PN     S++ AC + G   L +G  ++  + K     D      LI MY    G +D A
Sbjct: 172 PNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDVTASNVLISMYGNALGMVDYA 231

Query: 194 MQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK----GISPDSISYIAVLSA 249
            + F S   +++ +  S I      G ++ AF++F  M+ +    G+ P+  ++ +++SA
Sbjct: 232 RRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQKEVMGDGLKPNEYTFGSLISA 291

Query: 250 CSHLGWVEKGFYYFHSMF---DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKP 306
              L     G      +    +  G   +L   + +V    +AG +  A+N    M  + 
Sbjct: 292 TCSLA--NSGLVLLEQLLTRVEKSGFLHDLYVGSALVSGFAKAGSIGYAKNIFQKMSYRN 349

Query: 307 DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLS 349
              + G ++G  R  R  E  +    M    + N +   I+L+
Sbjct: 350 VVSLNGLIIGLVRQKRGEEAVELFMEMKDSVELNPNSYMIILT 392



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 90/198 (45%), Gaps = 40/198 (20%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDE-SDDLDVVSWNSMINGYVRN---- 55
           +V+K + A D  ++N+L+  Y  CG +     +F   SD  D VSWNSMI+GY+ N    
Sbjct: 617 LVLKRNVAADTAIENALLACYGKCGDMGYCENIFSRMSDRQDEVSWNSMISGYIHNELLP 676

Query: 56  ------------GEILEGLKLFDKMPQ----------------------RNDVSWNSILG 81
                       G+ L+G      +                         +D+   S L 
Sbjct: 677 KAMDMVWFMMQKGQRLDGFTFATVLSACATVATLERGMEVHGCSVRACLESDIVIGSALV 736

Query: 82  GL-VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
            +  + G +D A R F  MP R+L SW  +ISG+A++G   ++L LF +M+     P+  
Sbjct: 737 DMYAKCGRIDYASRFFEMMPARNLYSWNSMISGYARHGHGTKSLDLFAQMKLQGPLPDHV 796

Query: 141 ILVSLLSACAQLGALDYG 158
             V +LSAC+  G ++ G
Sbjct: 797 TFVGVLSACSHAGLVNEG 814



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 5/100 (5%)

Query: 173 DSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMK 232
           D  LC  LI++YA+ G +    +VF     +++ +++  I G   N    EA ELF  M 
Sbjct: 107 DLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTRNRMPNEACELFRKMV 166

Query: 233 SKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGI 272
           S G  P+  ++ +V+ AC      E G Y       +HG+
Sbjct: 167 SDGFMPNHYAFGSVIRACQ-----ECGEYGLKFGMQIHGL 201


>gi|293335745|ref|NP_001168519.1| uncharacterized protein LOC100382299 [Zea mays]
 gi|223948835|gb|ACN28501.1| unknown [Zea mays]
          Length = 599

 Score =  362 bits (928), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 175/418 (41%), Positives = 273/418 (65%), Gaps = 2/418 (0%)

Query: 95  VFNQMP-KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153
           VF+ M   ++LV+W  ++SG+++ G   EAL LFREMQ++ +EP+   +VS++SACA+ G
Sbjct: 183 VFDGMAGDKNLVAWSAMVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAG 242

Query: 154 ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIF 213
           ALD G WV++YI +K I +D  L  ALIDMYAKCG I+ A  VF +  +KD  A+++ I 
Sbjct: 243 ALDLGKWVHAYIDRKGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIV 302

Query: 214 GLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIK 273
           G A++G   +A  LF  M    + P+++++I VLSAC+H G VE G  Y+  M ++ GIK
Sbjct: 303 GFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQNL-GIK 361

Query: 274 PELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNM 333
           P +++Y CMVDLL R+GLL++A +F+  MP+ P++VIW TLL AC+     ++ +     
Sbjct: 362 PSMENYGCMVDLLCRSGLLDDAYSFVIGMPVSPNSVIWRTLLVACKSSNRIDIAESATKR 421

Query: 334 LIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLA 393
           L+E + ++   Y+LLSN+Y    + +    +R+ M+ + +    G S IE++G +HEF+ 
Sbjct: 422 LLELEPHNPENYVLLSNLYASNSQWDRVSYLRRKMKGKNVTAIAGRSSIEINGHLHEFVV 481

Query: 394 GDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGL 453
            D SH + +EI     E+  +++  G+   T +V+ D+ EEEKE  +  HSE+LA+A+GL
Sbjct: 482 SDDSHPEIREIRLVLREMADRVRRAGHKPWTAAVLHDVGEEEKEAALCQHSERLAIAYGL 541

Query: 454 ICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           + T+   VIR+VKN+R C DCH   K++SK + R+I +RDR  +H F  GSCSC ++W
Sbjct: 542 LKTRAPHVIRVVKNLRFCLDCHEVAKIISKAYNREIVVRDRVRFHKFMGGSCSCKDFW 599



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 119/229 (51%), Gaps = 5/229 (2%)

Query: 95  VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM-QSLDLEPNSAILVSLLSACAQLG 153
           +F+Q+P  +   +  LI      G    ALA++R M ++    PNS  L   L ACA + 
Sbjct: 82  LFDQIPDPTAFCYNSLIRALPAAGS-APALAVYRRMLRAGSPRPNSFTLAFALKACAAVP 140

Query: 154 ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY-GDKDVSAYTSAI 212
           A   G  +++   ++ +   + +   L+++YAKC  + LA  VF    GDK++ A+++ +
Sbjct: 141 APGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAMV 200

Query: 213 FGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGI 272
            G +  G   EA  LF  M++ G+ PD ++ ++V+SAC+  G ++ G  + H+  D  GI
Sbjct: 201 SGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLG-KWVHAYIDRKGI 259

Query: 273 KPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
             +L+    ++D+  + GL+E A     +M ++ D   W  ++    +H
Sbjct: 260 TVDLELSTALIDMYAKCGLIERARGVFDAM-VEKDTKAWSAMIVGFAIH 307



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 107/229 (46%), Gaps = 40/229 (17%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDE-SDDLDVVSWNSMINGYVRNGEILEG 61
           ++   A   +V+  L+  Y+ C +V  AR VFD  + D ++V+W++M++GY R G + E 
Sbjct: 153 LRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAMVSGYSRVGMVNEA 212

Query: 62  LKLFDKMP----QRNDVSWNSILGGLVRFGSVD--------------------------- 90
           L LF +M     + ++V+  S++    + G++D                           
Sbjct: 213 LGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGITVDLELSTALIDM 272

Query: 91  --------DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
                    A  VF+ M ++   +W  +I GFA +G  ++AL LF  M  L + PN+   
Sbjct: 273 YAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTF 332

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSID 191
           + +LSACA  G ++ G   +S +Q   IK        ++D+  + G +D
Sbjct: 333 IGVLSACAHSGLVEDGRRYWSIMQNLGIKPSMENYGCMVDLLCRSGLLD 381



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 78/161 (48%), Gaps = 11/161 (6%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           +     D+ +  +LI  Y+ CG +  AR VFD   + D  +W++MI G+  +G + + L 
Sbjct: 256 RKGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALG 315

Query: 64  LFDKMPQ----RNDVSWNSILGGLVRFGSVDDACRVFNQMP----KRSLVSWVVLISGFA 115
           LF +M +     N+V++  +L      G V+D  R ++ M     K S+ ++  ++    
Sbjct: 316 LFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQNLGIKPSMENYGCMVDLLC 375

Query: 116 QNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALD 156
           ++G   +A +    M    + PNS I  +LL AC     +D
Sbjct: 376 RSGLLDDAYSFVIGM---PVSPNSVIWRTLLVACKSSNRID 413


>gi|414880007|tpg|DAA57138.1| TPA: hypothetical protein ZEAMMB73_430226 [Zea mays]
          Length = 648

 Score =  362 bits (928), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 175/418 (41%), Positives = 273/418 (65%), Gaps = 2/418 (0%)

Query: 95  VFNQMP-KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153
           VF+ M   ++LV+W  ++SG+++ G   EAL LFREMQ++ +EP+   +VS++SACA+ G
Sbjct: 232 VFDGMAGDKNLVAWSAMVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAG 291

Query: 154 ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIF 213
           ALD G WV++YI +K I +D  L  ALIDMYAKCG I+ A  VF +  +KD  A+++ I 
Sbjct: 292 ALDLGKWVHAYIDRKGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIV 351

Query: 214 GLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIK 273
           G A++G   +A  LF  M    + P+++++I VLSAC+H G VE G  Y+  M ++ GIK
Sbjct: 352 GFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQNL-GIK 410

Query: 274 PELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNM 333
           P +++Y CMVDLL R+GLL++A +F+  MP+ P++VIW TLL AC+     ++ +     
Sbjct: 411 PSMENYGCMVDLLCRSGLLDDAYSFVIGMPVSPNSVIWRTLLVACKSSNRIDIAESATKR 470

Query: 334 LIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLA 393
           L+E + ++   Y+LLSN+Y    + +    +R+ M+ + +    G S IE++G +HEF+ 
Sbjct: 471 LLELEPHNPENYVLLSNLYASNSQWDRVSYLRRKMKGKNVTAIAGRSSIEINGHLHEFVV 530

Query: 394 GDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGL 453
            D SH + +EI     E+  +++  G+   T +V+ D+ EEEKE  +  HSE+LA+A+GL
Sbjct: 531 SDDSHPEIREIRLVLREMADRVRRAGHKPWTAAVLHDVGEEEKEAALCQHSERLAIAYGL 590

Query: 454 ICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           + T+   VIR+VKN+R C DCH   K++SK + R+I +RDR  +H F  GSCSC ++W
Sbjct: 591 LKTRAPHVIRVVKNLRFCLDCHEVAKIISKAYNREIVVRDRVRFHKFMGGSCSCKDFW 648



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 119/229 (51%), Gaps = 5/229 (2%)

Query: 95  VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM-QSLDLEPNSAILVSLLSACAQLG 153
           +F+Q+P  +   +  LI      G    ALA++R M ++    PNS  L   L ACA + 
Sbjct: 131 LFDQIPDPTAFCYNSLIRALPAAG-SAPALAVYRRMLRAGSPRPNSFTLAFALKACAAVP 189

Query: 154 ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY-GDKDVSAYTSAI 212
           A   G  +++   ++ +   + +   L+++YAKC  + LA  VF    GDK++ A+++ +
Sbjct: 190 APGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAMV 249

Query: 213 FGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGI 272
            G +  G   EA  LF  M++ G+ PD ++ ++V+SAC+  G ++ G  + H+  D  GI
Sbjct: 250 SGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLG-KWVHAYIDRKGI 308

Query: 273 KPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
             +L+    ++D+  + GL+E A     +M ++ D   W  ++    +H
Sbjct: 309 TVDLELSTALIDMYAKCGLIERARGVFDAM-VEKDTKAWSAMIVGFAIH 356



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 107/229 (46%), Gaps = 40/229 (17%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDE-SDDLDVVSWNSMINGYVRNGEILEG 61
           ++   A   +V+  L+  Y+ C +V  AR VFD  + D ++V+W++M++GY R G + E 
Sbjct: 202 LRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAMVSGYSRVGMVNEA 261

Query: 62  LKLFDKMP----QRNDVSWNSILGGLVRFGSVD--------------------------- 90
           L LF +M     + ++V+  S++    + G++D                           
Sbjct: 262 LGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGITVDLELSTALIDM 321

Query: 91  --------DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
                    A  VF+ M ++   +W  +I GFA +G  ++AL LF  M  L + PN+   
Sbjct: 322 YAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTF 381

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSID 191
           + +LSACA  G ++ G   +S +Q   IK        ++D+  + G +D
Sbjct: 382 IGVLSACAHSGLVEDGRRYWSIMQNLGIKPSMENYGCMVDLLCRSGLLD 430



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 78/161 (48%), Gaps = 11/161 (6%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           +     D+ +  +LI  Y+ CG +  AR VFD   + D  +W++MI G+  +G + + L 
Sbjct: 305 RKGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALG 364

Query: 64  LFDKMPQ----RNDVSWNSILGGLVRFGSVDDACRVFNQMP----KRSLVSWVVLISGFA 115
           LF +M +     N+V++  +L      G V+D  R ++ M     K S+ ++  ++    
Sbjct: 365 LFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQNLGIKPSMENYGCMVDLLC 424

Query: 116 QNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALD 156
           ++G   +A +    M    + PNS I  +LL AC     +D
Sbjct: 425 RSGLLDDAYSFVIGM---PVSPNSVIWRTLLVACKSSNRID 462


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  362 bits (928), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 195/549 (35%), Positives = 308/549 (56%), Gaps = 52/549 (9%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K  F ++V+V + LI  Y+  G++  A  +F    + DVVSW +MI GY ++ +  E 
Sbjct: 464 VLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEA 523

Query: 62  LKLFDKMPQR--------------------------------------NDVS-WNSILGG 82
           L LF +M  +                                      +D+S  N+++  
Sbjct: 524 LNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSL 583

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             R G V +A   F+Q+  +  VSW  L+SGFAQ+G  +EAL +F +M    LE NS   
Sbjct: 584 YARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTF 643

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S +SA A +  +  G  ++  I+K     ++ +  ALI +YAKCG+ID           
Sbjct: 644 GSAVSAAANIANVRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGTID----------- 692

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
            D+S + S I G + +G   EA +LFE+MK   + P+ ++++ VLSACSH+G V++G  Y
Sbjct: 693 -DIS-WNSMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISY 750

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F SM + H + P+ +HYAC+VDLLGR+GLL  A+ F+  MP++PD ++W TLL AC VH+
Sbjct: 751 FRSMSEAHNLVPKPEHYACVVDLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLLSACNVHK 810

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           N ++G+   + L+E +      Y+L+SN+Y  + K +  +  R+ M+ R +K+ PG S +
Sbjct: 811 NIDIGEFAASHLLELEPKDSATYVLVSNMYAVSGKWDCRDRTRQMMKDRGVKKEPGRSWV 870

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E+D  VH F AGD++H +   IY++   +  +    GY     S++ D E  +K+     
Sbjct: 871 EVDNSVHAFFAGDQNHPRADMIYEYLRGLDFRAAENGYVPRCNSLLSDAEIRQKDPTEII 930

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSE+LA+AFGL+     + + + KN+R+C DCH+ +K VSK+  R I +RD   +HHF+ 
Sbjct: 931 HSERLAIAFGLLSLTSSTPLYVFKNLRVCEDCHNWIKHVSKITDRVIIVRDSYRFHHFKV 990

Query: 503 GSCSCLEYW 511
           GSCSC +YW
Sbjct: 991 GSCSCKDYW 999



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 161/339 (47%), Gaps = 26/339 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +V+K  F+ + +V N+L+  YS  G +  A  +F      D VS+NS+I+G  + G I  
Sbjct: 276 LVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINR 335

Query: 61  GLKLFDKMP---QRND-VSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISG--- 113
            L LF KM    Q+ D V+  S+L      G++ +  +  +   K  + S +V+      
Sbjct: 336 ALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLD 395

Query: 114 -----------------FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALD 156
                            + Q     ++  +F +MQ   + PN     S+L  C  LGA D
Sbjct: 396 LYVKCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATD 455

Query: 157 YGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLA 216
            G  +++ + K   + +  + + LIDMYAK G +D A+++F    + DV ++T+ I G  
Sbjct: 456 LGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYT 515

Query: 217 MNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPEL 276
            +    EA  LF+ M+ +GI  D+I + + +SAC+ +  +++G    H+   + G   +L
Sbjct: 516 QHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQG-RQIHAQSCLSGYSDDL 574

Query: 277 DHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
                +V L  R G + EA      +  K DNV W +L+
Sbjct: 575 SIGNALVSLYARCGKVREAYAAFDQIYAK-DNVSWNSLV 612



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 158/345 (45%), Gaps = 42/345 (12%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
            + + F    F+ N LI  Y   G +  A+ VF+     D VSW +MI+G  +NG   E 
Sbjct: 190 TITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMISGLSQNGYEEEA 249

Query: 62  LKLFDKM-----PQRNDVSWNSILGGLV--------------------RFGSVDDACRVF 96
           + LF ++      +     +   L GLV                    R G++  A ++F
Sbjct: 250 MLLFCQIVLSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIF 309

Query: 97  NQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALD 156
           + M +R  VS+  LISG AQ G    ALALF++M     +P+   + SLLSACA +GAL 
Sbjct: 310 HCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALP 369

Query: 157 YGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLA 216
            G   +SY  K  +  D ++  +L+D+Y KC  I  A + F  YG  D            
Sbjct: 370 NGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFFLCYGQLD-----------N 418

Query: 217 MNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPEL 276
           +N    ++F++F  M+ +GI P+  +Y ++L  C+ LG  + G    H+     G +  +
Sbjct: 419 LN----KSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLG-EQIHTQVLKTGFQFNV 473

Query: 277 DHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
              + ++D+  + G L+ A      +  + D V W  ++     H
Sbjct: 474 YVSSVLIDMYAKHGKLDHALKIFRRLK-ENDVVSWTAMIAGYTQH 517



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 104/455 (22%), Positives = 186/455 (40%), Gaps = 87/455 (19%)

Query: 17  LIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRN---- 72
           LI FY   G +  A  VFDE     +  WN + N ++    +     LF +M  +N    
Sbjct: 103 LIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFD 162

Query: 73  ----------------------DVSWNSILGGL--------------VRFGSVDDACRVF 96
                                  +   +I  G                + G +  A +VF
Sbjct: 163 ERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVF 222

Query: 97  NQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALD 156
             +  R  VSWV +ISG +QNG  +EA+ LF ++              +LSAC ++   +
Sbjct: 223 ENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQI--------------VLSACTKVEFFE 268

Query: 157 YGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLA 216
           +G  ++  + K+    ++ +C AL+ +Y++ G++  A Q+FH    +D  +Y S I GLA
Sbjct: 269 FGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLA 328

Query: 217 MNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPEL 276
             G+   A  LF+ M      PD ++  ++LSAC+ +G +  G   FHS     G+  ++
Sbjct: 329 QQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNG-KQFHSYAIKAGMTSDI 387

Query: 277 DHYACMVDLLGRAGLLEEAENF----------------IASMPMK---PDNVIWGTLLGA 317
                ++DL  +   ++ A  F                   M ++   P+   + ++L  
Sbjct: 388 VVEGSLLDLYVKCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKT 447

Query: 318 CRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAP 377
           C      ++G++I   ++++            N+YV ++  +   +  K     KI R  
Sbjct: 448 CTTLGATDLGEQIHTQVLKTG--------FQFNVYVSSVLIDMYAKHGKLDHALKIFR-- 497

Query: 378 GCSLIELDGVV-HEFLAGDRSHEKTQEIYQFWEEI 411
              L E D V     +AG   H+K  E    ++E+
Sbjct: 498 --RLKENDVVSWTAMIAGYTQHDKFTEALNLFKEM 530



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 116/271 (42%), Gaps = 36/271 (13%)

Query: 48  MINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSW 107
           ++ G + +    +GLKL D                 + FG ++ A  VF++MP RSL  W
Sbjct: 87  LLEGCLNSRSFYDGLKLIDFY---------------LAFGDLNCAVNVFDEMPIRSLSCW 131

Query: 108 VVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA-QLGALDYGNWVYSYIQ 166
             + + F           LFR M + ++E +  I   +L  C+    +  +   +++   
Sbjct: 132 NRIFNTFIAERLMGRVPGLFRRMLTKNVEFDERIFAVVLRGCSGNAVSFRFVEQIHAKTI 191

Query: 167 KKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFE 226
               +  + +C  LID+Y K G +  A +VF +   +D  ++ + I GL+ NG+  EA  
Sbjct: 192 TSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMISGLSQNGYEEEAML 251

Query: 227 LFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYAC--MVD 284
           LF  +              VLSAC+ + + E G    H +    G   E   Y C  +V 
Sbjct: 252 LFCQI--------------VLSACTKVEFFEFG-KQLHGLVLKQGFSSET--YVCNALVT 294

Query: 285 LLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
           L  R+G L  AE     M  + D V + +L+
Sbjct: 295 LYSRSGNLSSAEQIFHCMSQR-DRVSYNSLI 324



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 91/202 (45%), Gaps = 30/202 (14%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           M+ K  +  +  V N+LI  Y+ CG + D             +SWNSMI GY ++G   E
Sbjct: 665 MIRKTGYDSETEVSNALITLYAKCGTIDD-------------ISWNSMITGYSQHGCGFE 711

Query: 61  GLKLFDKMPQ----RNDVSWNSILGGLVRFGSVDDACRVFNQM-------PKRSLVSWVV 109
            LKLF+ M Q     N V++  +L      G VD+    F  M       PK    + VV
Sbjct: 712 ALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEAHNLVPKPEHYACVV 771

Query: 110 LISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC 169
            + G  ++G    A     EM    ++P++ +  +LLSAC     +D G +  S++ +  
Sbjct: 772 DLLG--RSGLLSRAKRFVEEMP---IQPDAMVWRTLLSACNVHKNIDIGEFAASHLLELE 826

Query: 170 IKLDSILCAALIDMYAKCGSID 191
            K DS     + +MYA  G  D
Sbjct: 827 PK-DSATYVLVSNMYAVSGKWD 847


>gi|297728815|ref|NP_001176771.1| Os12g0128300 [Oryza sativa Japonica Group]
 gi|255670010|dbj|BAH95499.1| Os12g0128300 [Oryza sativa Japonica Group]
          Length = 587

 Score =  362 bits (928), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 173/443 (39%), Positives = 267/443 (60%), Gaps = 27/443 (6%)

Query: 78  SILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQ---------NGRPKEALALFR 128
           ++LG   R G +    RVF+++    L +W  L+S +A+                L LF 
Sbjct: 163 ALLGVFARCGRIASCRRVFDRIAHPDLPAWNALLSAYARLRARDVACATSAADAILELFV 222

Query: 129 EMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCG 188
            M SL +EPN   LV+++ AC +LGA+ +G W                  AL++MYA CG
Sbjct: 223 RMLSLAIEPNEITLVAVIGACGELGAVSHGVW------------------ALVEMYAGCG 264

Query: 189 SIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248
            +DLA QVF +  D+D   Y + + GLA++GH   A  L + M   G+  D ++ ++V+ 
Sbjct: 265 RLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRAALSLLDRMHGAGVPVDGVTVLSVMC 324

Query: 249 ACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDN 308
           AC+H G V++G  YF  M    GI+P ++HY CM+D+L RAG L  AE  I  M + P+ 
Sbjct: 325 ACAHAGLVDEGLDYFDRMEIEFGIEPRIEHYGCMIDMLSRAGRLNNAEKLIHEMLIVPNA 384

Query: 309 VIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTM 368
            I+ +L+ AC +H   E+G+++   L+  + +  G ++L+SN Y  T + E+A++ RK M
Sbjct: 385 AIYRSLIRACGIHGKLELGEKMIAELMRLEPDDSGNHVLISNFYARTNRWEDAKKARKEM 444

Query: 369 RKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVM 428
           +   I + PG SL++++GV+HEFL GD++H  ++EIY   EEI  ++   G    T S +
Sbjct: 445 KSMGIDKNPGSSLVDINGVLHEFLVGDKTHPASKEIYTMVEEIETRLIECGRRSSTSSAL 504

Query: 429 FDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRK 488
           FD+EEE+K   + YHSE+LA+AF LI + PG+ IRI+KN+R+C+DCH + KLVS+V+ R+
Sbjct: 505 FDVEEEDKADTLSYHSERLAIAFALIASNPGAPIRIIKNLRVCADCHESAKLVSRVYGRE 564

Query: 489 ISIRDRKHYHHFEDGSCSCLEYW 511
           I +RDR  +HHF DG CSC ++W
Sbjct: 565 IVMRDRTRFHHFRDGVCSCGDFW 587



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 98/222 (44%), Gaps = 35/222 (15%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVR---------NGEILE 60
           D  +  +L+  ++ CGR+   R VFD     D+ +WN++++ Y R               
Sbjct: 157 DRVLGAALLGVFARCGRIASCRRVFDRIAHPDLPAWNALLSAYARLRARDVACATSAADA 216

Query: 61  GLKLFDKMP----QRNDVSWNSILGGLVRFGSV-----------------DDACRVFNQM 99
            L+LF +M     + N+++  +++G     G+V                 D A +VF   
Sbjct: 217 ILELFVRMLSLAIEPNEITLVAVIGACGELGAVSHGVWALVEMYAGCGRLDLAEQVFAAA 276

Query: 100 PKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGN 159
             R    +  ++ G A +G  + AL+L   M    +  +   ++S++ ACA  G +D G 
Sbjct: 277 SDRDTRCYNAMLHGLAVHGHGRAALSLLDRMHGAGVPVDGVTVLSVMCACAHAGLVDEGL 336

Query: 160 WVYSYIQKKC---IKLDSILCAALIDMYAKCGSIDLAMQVFH 198
             +  ++ +     +++   C  +IDM ++ G ++ A ++ H
Sbjct: 337 DYFDRMEIEFGIEPRIEHYGC--MIDMLSRAGRLNNAEKLIH 376



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 76/161 (47%), Gaps = 12/161 (7%)

Query: 16  SLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP----QR 71
           +L++ Y+ CGR+  A  VF  + D D   +N+M++G   +G     L L D+M       
Sbjct: 255 ALVEMYAGCGRLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRAALSLLDRMHGAGVPV 314

Query: 72  NDVSWNSILGGLVRFGSVDDACRVFNQMP-----KRSLVSWVVLISGFAQNGRPKEALAL 126
           + V+  S++      G VD+    F++M      +  +  +  +I   ++ GR   A  L
Sbjct: 315 DGVTVLSVMCACAHAGLVDEGLDYFDRMEIEFGIEPRIEHYGCMIDMLSRAGRLNNAEKL 374

Query: 127 FREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK 167
             EM    + PN+AI  SL+ AC   G L+ G  + + + +
Sbjct: 375 IHEML---IVPNAAIYRSLIRACGIHGKLELGEKMIAELMR 412



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 60/151 (39%), Gaps = 9/151 (5%)

Query: 126 LFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYA 185
           LF       L PN+     L  A     AL        ++       D +L AAL+ ++A
Sbjct: 110 LFLSSSPPLLRPNAFTYPPLFRAAPPALALALATHSVKFLGAHAASCDRVLGAALLGVFA 169

Query: 186 KCGSIDLAMQVFHSYGDKDVSAYTSAIFGLA---------MNGHSIEAFELFENMKSKGI 236
           +CG I    +VF      D+ A+ + +   A             +    ELF  M S  I
Sbjct: 170 RCGRIASCRRVFDRIAHPDLPAWNALLSAYARLRARDVACATSAADAILELFVRMLSLAI 229

Query: 237 SPDSISYIAVLSACSHLGWVEKGFYYFHSMF 267
            P+ I+ +AV+ AC  LG V  G +    M+
Sbjct: 230 EPNEITLVAVIGACGELGAVSHGVWALVEMY 260


>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
 gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
          Length = 742

 Score =  362 bits (928), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 197/554 (35%), Positives = 314/554 (56%), Gaps = 47/554 (8%)

Query: 5   NSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDL--DVVSWNSMINGYVRNGEILEGL 62
           + F  ++ V N+++  Y  CG V +AR VFD  D+   DVVSWN M++ YV N    + +
Sbjct: 189 SGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKDAI 248

Query: 63  KLFDKMPQRND-VSWNSILG--------GLVRF--------------------------- 86
           +L+ +M  R D V++ S+L         GL R                            
Sbjct: 249 QLYQRMQLRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKC 308

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD-------LEPNS 139
           GS  +A  VF++M +RS++SW  +IS + +     EA  LF++M  L+       ++P++
Sbjct: 309 GSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDA 368

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
              V++L+ACA + AL+ G  V        +  D  +  A++++Y KCG I+ A ++F +
Sbjct: 369 LAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEARRIFDA 428

Query: 200 YGDK-DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEK 258
              + DV  + + I   A  G S EA +LF  M+ +G+ PDS S++++L ACSH G  ++
Sbjct: 429 VCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACSHTGLEDQ 488

Query: 259 GFYYFHSMF-DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
           G  YF SM  +   +   + H+ C+ DLLGR G L+EAE F+  +P+KPD V W +LL A
Sbjct: 489 GKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAA 548

Query: 318 CRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAP 377
           CR HR+ +  + + N L+  +      Y+ LSNIY E  K     +VRK M ++ +K+  
Sbjct: 549 CRNHRDLKRAKEVANKLLRLEPRCATGYVALSNIYAELQKWHAVAKVRKFMAEQGVKKER 608

Query: 378 GCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKE 437
           G S IE+   +H+F  GD +H + +EI +   ++  ++K  GY  +T+ V+  ++E+EKE
Sbjct: 609 GVSTIEIGKYMHDFATGDDAHPRNREIREELAKLHSQMKECGYVPDTKMVLHFVDEQEKE 668

Query: 438 TVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHY 497
            ++  HSE+LA+A GLI T  G+ +R+ KN+R+CSDCH+A KL+SK+  RKI +RD   +
Sbjct: 669 RLLFSHSERLAIALGLISTPLGTPLRVTKNLRVCSDCHTATKLISKIAGRKIVVRDPTRF 728

Query: 498 HHFEDGSCSCLEYW 511
           H F+DG CSC +YW
Sbjct: 729 HLFKDGKCSCQDYW 742



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 168/365 (46%), Gaps = 53/365 (14%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDL-DVVSWNSMINGYVRNGEIL 59
           MVV +    D  V N+L+  Y  CG +  A+ VF + +   +V+SW+ M   +  +G + 
Sbjct: 83  MVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIMAGAHALHGNVW 142

Query: 60  EGLKLFDKM---------------------P------------------QRNDVSWNSIL 80
           E L+ F  M                     P                  +   +  N+++
Sbjct: 143 EALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRMIHSCIALSGFESELLVANAVM 202

Query: 81  GGLVRFGSVDDACRVFNQMPK--RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPN 138
               R G+V++A +VF+ M +  R +VSW +++S +  N R K+A+ L++ MQ   L P+
Sbjct: 203 TMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKDAIQLYQRMQ---LRPD 259

Query: 139 SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH 198
               VSLLSAC+    +  G  ++  I    ++ + I+  AL+ MYAKCGS   A  VF 
Sbjct: 260 KVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFD 319

Query: 199 SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM-------KSKGISPDSISYIAVLSACS 251
               + + ++T+ I          EA  LF+ M        S+ + PD+++++ +L+AC+
Sbjct: 320 KMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNACA 379

Query: 252 HLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIW 311
            +  +E+G           G+  +      +V+L G+ G +EEA     ++  +PD  +W
Sbjct: 380 DVSALEQGKMVSEQAASC-GLSSDKAVGTAVVNLYGKCGEIEEARRIFDAVCSRPDVQLW 438

Query: 312 GTLLG 316
             ++ 
Sbjct: 439 NAMIA 443



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 128/285 (44%), Gaps = 35/285 (12%)

Query: 88  SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLS 147
           S  DA   F+ + +R+L SW  L++ FA +G+ KE L     M+   + P++   ++ L 
Sbjct: 7   SPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALG 66

Query: 148 ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY-GDKDVS 206
           +C    +L  G  ++  +    +++D  +  AL++MY KCGS+  A +VF      ++V 
Sbjct: 67  SCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVI 126

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
           +++      A++G+  EA   F  M   GI     + + +LSACS    V+ G    HS 
Sbjct: 127 SWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDG-RMIHSC 185

Query: 267 FDVHGIKPELDHYACMVDLLGRAGLLEEAE----------------NFIAS--------- 301
             + G + EL     ++ + GR G +EEA                 N + S         
Sbjct: 186 IALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGK 245

Query: 302 --------MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338
                   M ++PD V + +LL AC    +  +G+ +   ++  +
Sbjct: 246 DAIQLYQRMQLRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDE 290



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 124/296 (41%), Gaps = 79/296 (26%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +V +    +V V N+L+  Y+ CG   +AR VFD+ +   ++SW ++I+ YVR   + E 
Sbjct: 286 IVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEA 345

Query: 62  LKLFDKM--------PQR---NDVSWNSIL-----------GGLV--------------- 84
             LF +M         QR   + +++ +IL           G +V               
Sbjct: 346 CHLFQQMLELEKNGSSQRVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAV 405

Query: 85  ---------RFGSVDDACRVFNQMPKRSLVS-WVVLISGFAQNGRPKEALALFREMQSLD 134
                    + G +++A R+F+ +  R  V  W  +I+ +AQ G+  EAL LF  M+   
Sbjct: 406 GTAVVNLYGKCGEIEEARRIFDAVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEG 465

Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
           + P+S   VS+L AC+  G  D G   ++                   M  +  ++   +
Sbjct: 466 VRPDSFSFVSILLACSHTGLEDQGKSYFT------------------SMTTEYRNVTRTI 507

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250
           Q F    D            L   G   EA E  E +  K   PD++++ ++L+AC
Sbjct: 508 QHFGCVADL-----------LGRGGRLKEAEEFLEKLPVK---PDAVAWTSLLAAC 549



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 65/142 (45%), Gaps = 3/142 (2%)

Query: 183 MYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSIS 242
           MYA C S   A   F +   +++ ++T  +   A++G S E     E M+  G+ PD+++
Sbjct: 1   MYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVT 60

Query: 243 YIAVLSACSHLGWVEKGFYYFHSMFDVH-GIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
           +I  L +C     +  G      + D    I P++ +   ++++  + G L  A+   A 
Sbjct: 61  FITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSN--ALLNMYKKCGSLSHAKRVFAK 118

Query: 302 MPMKPDNVIWGTLLGACRVHRN 323
           M    + + W  + GA  +H N
Sbjct: 119 MERTRNVISWSIMAGAHALHGN 140


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  362 bits (928), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 190/543 (34%), Positives = 311/543 (57%), Gaps = 40/543 (7%)

Query: 8   AYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDK 67
           AY+  +   L+  Y+V   + +AR +FD+    ++  WN +I GY  NG     + L+ K
Sbjct: 79  AYNQDLATKLVHLYAVSNSLLNARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHK 138

Query: 68  M------------P---------------------------QRNDVSWNSILGGLVRFGS 88
           M            P                           +R+     +++    + G 
Sbjct: 139 MLDYGLRPDNFTLPFVLKACSALSAIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKCGC 198

Query: 89  VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148
           V DA RVF+++  R  V W  +++ +AQNG P E+++L REM +  + P  A LV+++S+
Sbjct: 199 VMDAGRVFDKIVVRDAVLWNSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVTVISS 258

Query: 149 CAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAY 208
            A +  L YG  ++ +  +   + +  +  ALIDMYAKCGS+ +A+ +F    +K V ++
Sbjct: 259 SADVACLPYGREIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKRVVSW 318

Query: 209 TSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD 268
            + I G AM+G ++ A +LF+ M+ K   PD I+++ VL+ACS    +++G   ++ M  
Sbjct: 319 NAIITGYAMHGLAVGALDLFDKMR-KEDRPDHITFVGVLAACSRGRLLDEGRALYNLMVR 377

Query: 269 VHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQ 328
            +GI P + HY CM+DLLG  G L+EA + I +M +KPD+ +WG LL +C++H N E+ +
Sbjct: 378 DYGITPTVQHYTCMIDLLGHCGQLDEAYDLIRNMSVKPDSGVWGALLNSCKIHGNVELAE 437

Query: 329 RIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVV 388
                LIE + +  G Y++L+N+Y ++ K E  E++R+ M  ++IK+   CS IE+   V
Sbjct: 438 LALEKLIELEPDDSGNYVILANMYAQSGKWEGVEKLRQVMIDKRIKKNIACSWIEVKNKV 497

Query: 389 HEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLA 448
           + FLAGD SH  +  IY   + +   +   GY  +T SV  D+EE+EK +++  HSE+LA
Sbjct: 498 YAFLAGDVSHSNSDAIYAELKRLEGLMHEAGYAPDTGSVFHDVEEDEKTSMVCSHSERLA 557

Query: 449 LAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCL 508
           +AFGLI T PG+ + I KN+RIC DCH A+K +SK+ +R+I++RD   YH F+ G CSC 
Sbjct: 558 IAFGLISTSPGTRLLITKNLRICEDCHVAIKFISKIMEREITVRDVNRYHSFKHGMCSCG 617

Query: 509 EYW 511
           ++W
Sbjct: 618 DHW 620



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 124/296 (41%), Gaps = 75/296 (25%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K+ +  D+FV  +LI  Y+ CG V DA  VFD+    D V WNSM+  Y +NG   E 
Sbjct: 174 VIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGHPDES 233

Query: 62  LKLFDKMP---------------------------------------QRNDVSWNSILGG 82
           + L  +M                                        Q ND    +++  
Sbjct: 234 ISLCREMAANGVRPTEATLVTVISSSADVACLPYGREIHGFGWRHGFQSNDKVKTALIDM 293

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + GSV  A  +F ++ ++ +VSW  +I+G+A +G    AL LF +M+  D  P+    
Sbjct: 294 YAKCGSVKVALALFERLREKRVVSWNAIITGYAMHGLAVGALDLFDKMRKED-RPDHITF 352

Query: 143 VSLLSACAQLGALDYGNWVYSY-IQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           V +L+AC++   LD G  +Y+  ++   I         +ID+   CG +D          
Sbjct: 353 VGVLAACSRGRLLDEGRALYNLMVRDYGITPTVQHYTCMIDLLGHCGQLD---------- 402

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVE 257
                                EA++L  NM  K   PDS  + A+L++C   G VE
Sbjct: 403 ---------------------EAYDLIRNMSVK---PDSGVWGALLNSCKIHGNVE 434



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 96/223 (43%), Gaps = 3/223 (1%)

Query: 96  FNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI-LVSLLSACAQLGA 154
           F  + K    S++  +  F+Q+     A      + S   +P +     SLL +C    A
Sbjct: 3   FYSIKKTQHTSFIFNLFPFSQSFYHSLATHQTASVDSFPPQPTTHYGYTSLLQSCIDSKA 62

Query: 155 LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFG 214
           L+ G  +++      I  +  L   L+ +YA   S+  A  +F     +++  +   I G
Sbjct: 63  LNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNLFDKIPKQNLFLWNVLIRG 122

Query: 215 LAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP 274
            A NG    A  L+  M   G+ PD+ +   VL ACS L  + +G    H      G + 
Sbjct: 123 YAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGEG-RSIHEYVIKSGWER 181

Query: 275 ELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
           +L   A ++D+  + G + +A      + ++ D V+W ++L A
Sbjct: 182 DLFVGAALIDMYAKCGCVMDAGRVFDKIVVR-DAVLWNSMLAA 223


>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 637

 Score =  362 bits (928), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 193/541 (35%), Positives = 294/541 (54%), Gaps = 39/541 (7%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DV + N LI  YS CG V  AR VFD   +  +VSWN+MI  Y RN    E L +F +M 
Sbjct: 97  DVTLSNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFWEMR 156

Query: 70  QR----NDVSWNSILGGL-----------------------------------VRFGSVD 90
                 ++ + +S+L                                       + G ++
Sbjct: 157 NEGFKFSEFTISSVLSACGANCDALECKKLHCLSMKTSLDLNLYVGTALLDLYAKCGMIN 216

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           DA +VF  M  +S V+W  +++G+ Q+   +EAL L+R  Q + LE N   L S++ AC+
Sbjct: 217 DAVQVFESMQDKSSVTWSSMVAGYVQSKNYEEALLLYRRAQRMSLEQNQFTLSSVICACS 276

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
            L AL  G  +++ I+K     +  + ++ +DMYAKCGS+  +  +F    +K++  + +
Sbjct: 277 NLAALIEGKQMHAVIRKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNIELWNT 336

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I G A +    E   LFE M+  G+ P+ +++ ++LS C H G VE+G  +F  M   +
Sbjct: 337 IISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTY 396

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
           G+ P + HY+CMVD+LGRAGLL EA   I S+P +P   IWG+LL +CRV +N E+ +  
Sbjct: 397 GLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFEPTASIWGSLLASCRVCKNLELAEVA 456

Query: 331 GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHE 390
              L E +  + G ++LLSNIY    + E   + RK +R   +K+  G S I++   VH 
Sbjct: 457 AKKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGQSWIDIKDKVHI 516

Query: 391 FLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALA 450
           F  G+ SH + +EI    + +V +++ +GY       + D+E  +KE ++  HSEKLAL 
Sbjct: 517 FRVGESSHPRIREICTMLDNLVIELRKFGYKPSVEHELHDVEIGKKEELLMQHSEKLALV 576

Query: 451 FGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEY 510
           FGL+C   GS +RI+KN+RIC DCH  MK  S   +R I +RD   +HHF DG CSC E+
Sbjct: 577 FGLMCLPEGSTVRIMKNLRICVDCHEFMKAASMATRRFIIVRDANRFHHFSDGHCSCGEF 636

Query: 511 W 511
           W
Sbjct: 637 W 637



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 147/294 (50%), Gaps = 13/294 (4%)

Query: 37  SDDLDVVSWNSMINGY---VRNGEILEGLKLFDK---MPQRNDVSWNSIL-GGLVRFGSV 89
           SD+ +VV  +  I       RNG ++E      K   M  + DV+ +++L     + G V
Sbjct: 55  SDEFNVVQASDFIEILQLCARNGAVMEAKACHGKTMRMELQGDVTLSNVLINAYSKCGFV 114

Query: 90  DDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
           + A +VF+ M +RSLVSW  +I  + +N    EAL +F EM++   + +   + S+LSAC
Sbjct: 115 ELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSAC 174

Query: 150 -AQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAY 208
            A   AL+    ++    K  + L+  +  AL+D+YAKCG I+ A+QVF S  DK    +
Sbjct: 175 GANCDALECKK-LHCLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVTW 233

Query: 209 TSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD 268
           +S + G   + +  EA  L+   +   +  +  +  +V+ ACS+L  + +G    H++  
Sbjct: 234 SSMVAGYVQSKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEG-KQMHAVIR 292

Query: 269 VHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNV-IWGTLLGACRVH 321
             G    +   +  VD+  + G L E+  +I    ++  N+ +W T++     H
Sbjct: 293 KSGFGSNVFVASSAVDMYAKCGSLRES--YIIFSEVQEKNIELWNTIISGFAKH 344



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 113/239 (47%), Gaps = 40/239 (16%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + +K S   +++V  +L+  Y+ CG + DA  VF+   D   V+W+SM+ GYV++    E
Sbjct: 189 LSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVTWSSMVAGYVQSKNYEE 248

Query: 61  GLKLFDKMP----QRNDVSWNSI------LGGLV-------------------------- 84
            L L+ +      ++N  + +S+      L  L+                          
Sbjct: 249 ALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVIRKSGFGSNVFVASSAVD 308

Query: 85  ---RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + GS+ ++  +F+++ ++++  W  +ISGFA++ RPKE + LF +MQ   + PN   
Sbjct: 309 MYAKCGSLRESYIIFSEVQEKNIELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVT 368

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKK-CIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
             SLLS C   G ++ G   +  ++    +  + +  + ++D+  + G +  A ++  S
Sbjct: 369 FSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKS 427



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 86/158 (54%), Gaps = 12/158 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++ K+ F  +VFV +S +  Y+ CG +R++  +F E  + ++  WN++I+G+ ++    E
Sbjct: 290 VIRKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNIELWNTIISGFAKHARPKE 349

Query: 61  GLKLFDKMPQ----RNDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLI 111
            + LF+KM Q     N+V+++S+L      G V++  R F  M        ++V +  ++
Sbjct: 350 VMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMV 409

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
               + G   EA  L   ++S+  EP ++I  SLL++C
Sbjct: 410 DILGRAGLLSEAYEL---IKSIPFEPTASIWGSLLASC 444


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  361 bits (927), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 209/554 (37%), Positives = 314/554 (56%), Gaps = 50/554 (9%)

Query: 8   AYDVF--VKNSLIQFYSVCGRVRDARWVFDESDD---LDVVSWNSMINGYVRNGEILEGL 62
            YD +  V N+++  YS  G + +AR VF E  +    D VSWN+MI    ++ E LE +
Sbjct: 169 GYDCYASVNNAVLACYSRKGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAV 228

Query: 63  KLFDKMPQRN-DVSWNSILGGLVRFGSVDD------------------------------ 91
           +LF +M +R   V   ++   L  F  V D                              
Sbjct: 229 ELFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLY 288

Query: 92  --------ACR-VFNQMPKRSLVSWVVLISGFAQ-NGRPKEALALFREMQSLDLEPNSAI 141
                    CR VF ++    LV W  +ISGF+Q     ++ +  FREMQ     P+   
Sbjct: 289 SKCAGGMVECRKVFEEIAAPDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCS 348

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI-LCAALIDMYAKCGSIDLAMQVFHSY 200
            V + SAC+ L +   G  V++   K  I  + + +  AL+ MY+KCG++  A +VF + 
Sbjct: 349 FVCVTSACSNLSSPSVGKQVHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTM 408

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
            + ++ +  S I G A +G  +E+  LFE M  K I+P++I++IAVLSAC H G VE+G 
Sbjct: 409 PEHNMVSLNSMIAGYAQHGVEVESLRLFELMLQKDIAPNTITFIAVLSACVHTGKVEEGQ 468

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
            YF+ M +   I+PE +HY+CM+DLLGRAG L+EAE  I +MP  P ++ W TLLGACR 
Sbjct: 469 KYFNMMKERFRIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRK 528

Query: 321 HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS 380
           H N E+  +  N  ++ +  +   Y++LSN+Y    + E A  V++ MR+R +K+ PGCS
Sbjct: 529 HGNVELAVKAANEFLQLEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCS 588

Query: 381 LIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMF---DIEEEEKE 437
            IE+D  VH F+A D SH   +EI+ +  EI++K+K  GY  + R  +    ++E +EKE
Sbjct: 589 WIEIDKKVHVFVAEDTSHPMIKEIHVYMGEILRKMKQAGYVPDIRWALVKDEEVEPDEKE 648

Query: 438 TVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHY 497
             + YHSEKLA+AFGLI T+    I +VKN+RIC DCH+A+KL+S +  R+I++RD   +
Sbjct: 649 RRLLYHSEKLAVAFGLISTEEWVPILVVKNLRICGDCHNAIKLISAITGREITVRDTHRF 708

Query: 498 HHFEDGSCSCLEYW 511
           H F++G CSC +YW
Sbjct: 709 HCFKEGHCSCGDYW 722



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 107/445 (24%), Positives = 179/445 (40%), Gaps = 94/445 (21%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           +VF  N+LI  Y+    +  AR VFDE    D+VS+N++I  Y   GE    L+LF ++ 
Sbjct: 74  NVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFAEVR 133

Query: 70  QR-----------------NDVSW--------------------NSILGGLVRFGSVDDA 92
           +                  +DV                      N++L    R G +++A
Sbjct: 134 ELRFGLDGFTLSGVIIACGDDVGLVRQLHCFVVVCGYDCYASVNNAVLACYSRKGFLNEA 193

Query: 93  CRVFNQMPK---RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
            RVF +M +   R  VSW  +I    Q+    EA+ LFREM    L+ +   + S+L+A 
Sbjct: 194 RRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASVLTAF 253

Query: 150 AQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC-GSIDLAMQVFHSYGDKDVSAY 208
             +  L  G   +  + K     +S + + LID+Y+KC G +    +VF      D+  +
Sbjct: 254 TCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIAAPDLVLW 313

Query: 209 TSAIFGLAM-NGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMF 267
            + I G +     S +    F  M+  G  PD  S++ V SACS+L     G    H++ 
Sbjct: 314 NTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVG-KQVHAL- 371

Query: 268 DVHGIKPELDHYA-----CMVDLLGRAGLLEEAENFIASMP------------------- 303
               IK ++ +        +V +  + G + +A     +MP                   
Sbjct: 372 ---AIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGYAQHGV 428

Query: 304 ---------------MKPDNVIWGTLLGACRVHRNAEMGQRIGNML-----IESDQNHDG 343
                          + P+ + +  +L AC      E GQ+  NM+     IE +  H  
Sbjct: 429 EVESLRLFELMLQKDIAPNTITFIAVLSACVHTGKVEEGQKYFNMMKERFRIEPEAEH-- 486

Query: 344 RYILLSNIYVETLKGENAEEVRKTM 368
            Y  + ++     K + AE + +TM
Sbjct: 487 -YSCMIDLLGRAGKLKEAERIIETM 510



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 91/166 (54%), Gaps = 13/166 (7%)

Query: 1   MVVKNSFAYD-VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEIL 59
           + +K+   Y+ V V N+L+  YS CG V DAR VFD   + ++VS NSMI GY ++G  +
Sbjct: 371 LAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGYAQHGVEV 430

Query: 60  EGLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVL 110
           E L+LF+ M Q+    N +++ ++L   V  G V++  + FN M +R  +      +  +
Sbjct: 431 ESLRLFELMLQKDIAPNTITFIAVLSACVHTGKVEEGQKYFNMMKERFRIEPEAEHYSCM 490

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALD 156
           I    + G+ KEA    R ++++   P S    +LL AC + G ++
Sbjct: 491 IDLLGRAGKLKEAE---RIIETMPFNPGSIEWATLLGACRKHGNVE 533



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 76/325 (23%), Positives = 138/325 (42%), Gaps = 57/325 (17%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           K+      ++ N     YS CG + +A+  FD +   +V S+N++IN Y ++  I    +
Sbjct: 37  KSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFDLTQYPNVFSYNTLINAYAKHSLIHLARQ 96

Query: 64  LFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEA 123
           +FD++PQ + VS+N+                               LI+ +A  G  + A
Sbjct: 97  VFDEIPQPDIVSYNT-------------------------------LIAAYADRGECRPA 125

Query: 124 LALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCA----- 178
           L LF E++ L    +   L  ++ AC        G+ V    Q  C     ++C      
Sbjct: 126 LRLFAEVRELRFGLDGFTLSGVIIAC--------GDDVGLVRQLHCF---VVVCGYDCYA 174

Query: 179 ----ALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENM 231
               A++  Y++ G ++ A +VF   G+   +D  ++ + I     +   +EA ELF  M
Sbjct: 175 SVNNAVLACYSRKGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREM 234

Query: 232 KSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGR-AG 290
             +G+  D  +  +VL+A + +  +  G   FH M    G        + ++DL  + AG
Sbjct: 235 VRRGLKVDMFTMASVLTAFTCVKDLVGGM-QFHGMMIKSGFHGNSHVGSGLIDLYSKCAG 293

Query: 291 LLEEAENFIASMPMKPDNVIWGTLL 315
            + E       +   PD V+W T++
Sbjct: 294 GMVECRKVFEEIA-APDLVLWNTMI 317


>gi|147819809|emb|CAN60740.1| hypothetical protein VITISV_030210 [Vitis vinifera]
          Length = 1033

 Score =  361 bits (927), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 195/474 (41%), Positives = 293/474 (61%), Gaps = 7/474 (1%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K    +D FV NS+++ Y   G +  AR VFD   + DVVSWNSMI GY++ GEI   
Sbjct: 135 VLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELA 194

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
            +LFD+MP+R+ VS N+++ G  + G  + A +VF  M  + +V+W  +IS + QN  P 
Sbjct: 195 SELFDEMPERDLVSCNAMIDGYGKCGRCELAEKVFETMSDKDVVTWTSMISAYVQNRCPM 254

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDS-ILCAAL 180
           +AL LFREM SL L P+   +VS+LSA A LG ++ G W+++Y+    I+L S  + +AL
Sbjct: 255 KALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSAL 314

Query: 181 IDMYAKCGSIDLAMQVFHSYGDK-DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
           IDMY+KCG I+ A  VF S   + ++  + S I GLA++G + EA ++F  M+   I P+
Sbjct: 315 IDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPN 374

Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI 299
            I+++ +LS CSH G VE+G +YF SM + + I P + HY CM+DL GRAG LE+A   I
Sbjct: 375 EITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVI 434

Query: 300 ASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGE 359
            +MP + D + W  +L A   H + E+G+      IE   +    Y+LLSNIY +  + +
Sbjct: 435 QNMPFEADLLAWKAILSASMKHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWD 494

Query: 360 NAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAG---DRSHEKTQEIYQFWEEIVKKIK 416
           +  ++R  MR+R +K+  GCS + +BG VHEFL G   D S+  + ++     E+V ++K
Sbjct: 495 DVAKIRLMMRQRGVKKIAGCSSMLVBGKVHEFLXGKELDSSY--SGQVLAKIAEVVSRLK 552

Query: 417 NYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRI 470
             GY  +   V+ DIE+E KE+++  HSEK+A AFGLI     + I IVKN+RI
Sbjct: 553 LQGYEPDLTQVLLDIEDEGKESLLNLHSEKMAXAFGLIHINKSAPIHIVKNLRI 606



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 88/185 (47%), Gaps = 8/185 (4%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI---LV 143
           G +D A  VF+++   +   +  LI GF+    P E+L L+  M S  L  +S +   + 
Sbjct: 55  GGLDYASSVFSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSC-LNYSSGVEFSIP 113

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           S+L AC +L A D G  V+  + K  +  D  +  +++ MY   G I+LA +VF    ++
Sbjct: 114 SVLKACGKLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNR 173

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           DV ++ S I G    G    A ELF+ M  +    D +S  A++      G  E     F
Sbjct: 174 DVVSWNSMIAGYLKAGEIELASELFDEMPER----DLVSCNAMIDGYGKCGRCELAEKVF 229

Query: 264 HSMFD 268
            +M D
Sbjct: 230 ETMSD 234


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  361 bits (927), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 202/548 (36%), Positives = 316/548 (57%), Gaps = 39/548 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +KN    D+ V NSL+  Y+    ++    +FD+  D DVVSW ++I G+ +NG     L
Sbjct: 410 MKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRAL 469

Query: 63  KLFDKMPQ----------------------------------RNDVSWNSILGGLVRF-- 86
           +LF ++                                    R  +S   +  G+V    
Sbjct: 470 ELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLVLQNGIVDVYG 529

Query: 87  --GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
             G+VD A R+F  +  + +VSW  +IS +  NG   EAL LF  M+   +EP+S  LVS
Sbjct: 530 ECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVS 589

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           +LSA A L AL  G  ++ ++ +K   L+  L + L+DMYA+CG+++ +  VF+   +KD
Sbjct: 590 ILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKD 649

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           +  +TS I    M+G    A +LF  M+ + I+PD I+++AVL ACSH G + +G  +  
Sbjct: 650 LVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLE 709

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
           SM   + ++P  +HYAC+VDLLGRA  LEEA  F+  M ++P   +W  LLGAC++H N 
Sbjct: 710 SMKYEYQLEPWPEHYACLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNK 769

Query: 325 EMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIEL 384
           E+G+     L+E D  + G Y+L+SN+Y    + ++ E VR  M+   +K+ PGCS IE+
Sbjct: 770 ELGEIAAQKLLEMDPENPGNYVLVSNVYSAERRWKDVEXVRMRMKASGLKKNPGCSWIEV 829

Query: 385 DGVVHEFLAGDRSHEKTQEIYQFWEEIVKKI-KNYGYNVETRSVMFDIEEEEKETVIGYH 443
              VH F+A D+SH ++ EIY    +I +K+ K  GY  +T+ V+ + +EEEK  ++  H
Sbjct: 830 GNKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKEEEKVQMLYGH 889

Query: 444 SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
           SE+LA+A+G++ T  G+ +RI KN+R+C DCH+  KL+SK F+R++ +RD   +HHF+ G
Sbjct: 890 SERLAIAYGMLTTPEGASLRITKNLRVCGDCHNFCKLISKFFERELVMRDANRFHHFKGG 949

Query: 504 SCSCLEYW 511
            CSC + W
Sbjct: 950 VCSCGDVW 957



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 114/359 (31%), Positives = 188/359 (52%), Gaps = 42/359 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K+S+  +VFV N+LI  Y+  G++ +A  +F   DD D +SWNSM++G+V+NG   E 
Sbjct: 308 VLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEA 367

Query: 62  LKLFDKM---PQRNDV------------------------------------SWNSILGG 82
           L+ + +M    Q+ D+                                      NS++  
Sbjct: 368 LQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDM 427

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             +F S+     +F++MP + +VSW  +I+G AQNG    AL LFRE+Q   ++ +  ++
Sbjct: 428 YAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMI 487

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S+L AC+ L  +     ++SYI +K +  D +L   ++D+Y +CG++D A ++F     
Sbjct: 488 SSILLACSGLKLISSVKEIHSYIIRKGLS-DLVLQNGIVDVYGECGNVDYAARMFELIEF 546

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           KDV ++TS I     NG + EA ELF  MK  G+ PDSIS +++LSA + L  ++KG   
Sbjct: 547 KDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKG-KE 605

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            H      G   E    + +VD+  R G LE++ N    +  K D V+W +++ A  +H
Sbjct: 606 IHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNK-DLVLWTSMINAYGMH 663



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 106/361 (29%), Positives = 173/361 (47%), Gaps = 44/361 (12%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDE-SDDLDVVSWNSMINGYVRNGEIL 59
           + +K  +   VFV NS++  Y+ C  +  AR +FD   +  DVVSWNSMI+ Y  NG+ +
Sbjct: 205 LAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSI 264

Query: 60  EGLKLFDKMPQRN----------------DVSW-----------------------NSIL 80
           E L+LF +M + +                D S+                       N+++
Sbjct: 265 EALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALI 324

Query: 81  GGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
               RFG + +A  +F  M     +SW  ++SGF QNG   EAL  + EM+    +P+  
Sbjct: 325 AMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLV 384

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
            ++S+++A A+ G   +G  +++Y  K  +  D  +  +L+DMYAK  S+     +F   
Sbjct: 385 AVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKM 444

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
            DKDV ++T+ I G A NG    A ELF  ++ +GI  D +   ++L ACS L  +    
Sbjct: 445 PDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISS-V 503

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
              HS     G+  +L     +VD+ G  G ++ A      +  K D V W +++ +C V
Sbjct: 504 KEIHSYIIRKGLS-DLVLQNGIVDVYGECGNVDYAARMFELIEFK-DVVSWTSMI-SCYV 560

Query: 321 H 321
           H
Sbjct: 561 H 561



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/357 (27%), Positives = 164/357 (45%), Gaps = 42/357 (11%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           M+  N+    VF+   L+  Y  CG + DA  +FD      + +WN+MI  YV NGE L 
Sbjct: 104 MITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLG 163

Query: 61  GLKLFDKMP-----------------------------------QRNDVS----WNSILG 81
            L+L+ +M                                    +   VS     NSI+G
Sbjct: 164 SLELYREMRVSGIPLDACTFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVG 223

Query: 82  GLVRFGSVDDACRVFNQMP-KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
              +   ++ A ++F++MP K  +VSW  +IS ++ NG+  EAL LF EMQ   L PN+ 
Sbjct: 224 MYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTY 283

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
             V+ L AC     +  G ++++ + K    ++  +  ALI MYA+ G +  A  +F++ 
Sbjct: 284 TFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNM 343

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
            D D  ++ S + G   NG   EA + +  M+  G  PD ++ I++++A +  G    G 
Sbjct: 344 DDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGM 403

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
              H+    +G+  +L     +VD+  +   ++  +     MP K D V W T++  
Sbjct: 404 -QIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDK-DVVSWTTIIAG 458



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 78/181 (43%), Gaps = 14/181 (7%)

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSI-LCAALIDMYAKCGSIDLAMQVFHSYGD 202
           S+L  C    AL  G  V++++       +S+ L   L+ MY KCG +  A ++F     
Sbjct: 83  SVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPH 142

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           K +  + + I     NG  + + EL+  M+  GI  D+ ++  +L AC  L     G   
Sbjct: 143 KTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRYG--- 199

Query: 263 FHSMFDVHGIKPELDHYA------CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLG 316
                +VHG+  +  + +       +V +  +   L  A      MP K D V W +++ 
Sbjct: 200 ----AEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMIS 255

Query: 317 A 317
           A
Sbjct: 256 A 256



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 75/157 (47%), Gaps = 12/157 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++  F  +  + ++L+  Y+ CG +  +R VF+   + D+V W SMIN Y  +G     
Sbjct: 610 LIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAA 669

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMP-KRSLVSW----VVLIS 112
           + LF +M       + +++ ++L      G +++  R    M  +  L  W      L+ 
Sbjct: 670 IDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYACLVD 729

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
              +    +EA   ++ ++ +++EP + +  +LL AC
Sbjct: 730 LLGRANHLEEA---YQFVKGMEVEPTAEVWCALLGAC 763


>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
 gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
          Length = 562

 Score =  361 bits (927), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 195/541 (36%), Positives = 307/541 (56%), Gaps = 39/541 (7%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           ++   N LI  +   G +  A  VFDE  + +V +WN+M++G ++      GL LF +M 
Sbjct: 22  NIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLFREMH 81

Query: 70  Q----RNDVSWNSILGG-----------------------------------LVRFGSVD 90
           +     ++ +  S+L G                                    ++ GS+ 
Sbjct: 82  ELGFLPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLG 141

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           +  +V   M  R++V+W  LI+G AQNG  +  L L+  M+   L P+   LVS++S+ A
Sbjct: 142 EGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSSA 201

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
           +L  L  G  +++   K        + ++LI MY+KCG ++ +M+        D   ++S
Sbjct: 202 ELATLFQGQQIHAEAIKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDSVLWSS 261

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I     +G   EA  LFE M+ +G+  + ++++++L ACSH G  EKG  +F  M + +
Sbjct: 262 MIAAYGFHGRGEEAVHLFEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKLMVEKY 321

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
           G+KP L+HY C+VDLLGR+G L+EAE  I SMP++ D VIW TLL ACR+HRNA+M  R 
Sbjct: 322 GLKPRLEHYTCVVDLLGRSGCLDEAEAMIRSMPLEADVVIWKTLLSACRIHRNADMATRT 381

Query: 331 GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHE 390
              ++  +      Y+LLSNI+    + ++  +VR TMR R +K+ PG S +E+   V +
Sbjct: 382 AEEILRLNPQDSATYVLLSNIHASAKRWKDVSKVRTTMRDRNVKKEPGVSWLEVKNRVFQ 441

Query: 391 FLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALA 450
           F  GD+SH  ++EI  + +E+++++K  GY  +T +V  D + EEKE  +  HSEKLA+A
Sbjct: 442 FSMGDKSHPMSEEIDLYLKELMEEMKLRGYVPDTATVFHDTDSEEKENSLVNHSEKLAIA 501

Query: 451 FGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEY 510
           FGL+   PGS IR++KN+RICSDCH A+KL+S +  R+I +RD   +HHF+ G CSC +Y
Sbjct: 502 FGLMNIPPGSPIRVMKNLRICSDCHVAIKLISDINNREIIVRDTSRFHHFKHGKCSCGDY 561

Query: 511 W 511
           W
Sbjct: 562 W 562



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 144/274 (52%), Gaps = 2/274 (0%)

Query: 52  YVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLI 111
           Y + GEI E +  F+ MP RN +S N ++ G V+ G +D A +VF++M +R++ +W  ++
Sbjct: 2   YFKMGEIQEAIAFFNAMPMRNIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAMV 61

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK 171
           SG  Q    +  L LFREM  L   P+   L S+L  CA L A   G  V++Y+ K   +
Sbjct: 62  SGLIQFEFNENGLFLFREMHELGFLPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYE 121

Query: 172 LDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM 231
            + ++ ++L  MY K GS+    +V  +   ++V A+ + I G A NGH     +L+  M
Sbjct: 122 FNLVVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMM 181

Query: 232 KSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGL 291
           K  G+ PD I+ ++V+S+ + L  + +G    H+     G    +   + ++ +  + G 
Sbjct: 182 KMSGLRPDKITLVSVISSSAELATLFQG-QQIHAEAIKAGANSAVAVLSSLISMYSKCGC 240

Query: 292 LEEAENFIASMPMKPDNVIWGTLLGACRVHRNAE 325
           LE++   +      PD+V+W +++ A   H   E
Sbjct: 241 LEDSMKALLDCE-HPDSVLWSSMIAAYGFHGRGE 273



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 52/240 (21%), Positives = 99/240 (41%), Gaps = 44/240 (18%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K  + +++ V +SL   Y   G + +   V       +VV+WN++I G  +NG     
Sbjct: 115 VLKYGYEFNLVVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGV 174

Query: 62  LKLFDKM------PQRNDV-----------------------------SWNSILGGLV-- 84
           L L++ M      P +  +                             S  ++L  L+  
Sbjct: 175 LDLYNMMKMSGLRPDKITLVSVISSSAELATLFQGQQIHAEAIKAGANSAVAVLSSLISM 234

Query: 85  --RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G ++D+ +          V W  +I+ +  +GR +EA+ LF +M+   L  N    
Sbjct: 235 YSKCGCLEDSMKALLDCEHPDSVLWSSMIAAYGFHGRGEEAVHLFEQMEQEGLGGNDVTF 294

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKC---IKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
           +SLL AC+  G  + G   +  + +K     +L+   C  ++D+  + G +D A  +  S
Sbjct: 295 LSLLYACSHNGLKEKGMGFFKLMVEKYGLKPRLEHYTC--VVDLLGRSGCLDEAEAMIRS 352


>gi|302824741|ref|XP_002994011.1| hypothetical protein SELMODRAFT_137997 [Selaginella moellendorffii]
 gi|300138173|gb|EFJ04951.1| hypothetical protein SELMODRAFT_137997 [Selaginella moellendorffii]
          Length = 434

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 180/436 (41%), Positives = 269/436 (61%), Gaps = 5/436 (1%)

Query: 79  ILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPN 138
           ++    R G +  A   F+  P+R+  SW  +I+G+AQNG  K AL LFR M +     +
Sbjct: 1   MIAAYARHGRMIHAKTTFDAAPRRNSSSWNAMIAGYAQNGHCKAALHLFRAMNNEGQRCD 60

Query: 139 SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH 198
               V+ + ACA L AL  G  ++S      +     +  A+++MYAKCG++D A  VF 
Sbjct: 61  MVTFVAAIDACAGLSALVAGRSLHSIAAAAGLVAHVEISTAIVNMYAKCGNLDDATIVFS 120

Query: 199 SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEK 258
           S  +K++ ++++ I     NGH+  A + F  M   G+ PD++++ ++LSACSH G  E 
Sbjct: 121 SIRNKNLISWSTMITAFVQNGHTDRALDAFLAMNVDGLFPDAVTFKSILSACSHAGLFEH 180

Query: 259 GFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
           GF++F  +    GI P +DH+ CMVDLLGR+G L EAE  + +MP  PD+V W TLL AC
Sbjct: 181 GFFHFDLLVHDFGITPTMDHFKCMVDLLGRSGRLLEAEELVQTMPFVPDDVTWNTLLAAC 240

Query: 319 RVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAE--EVRKTMRKRKIKRA 376
           RVH++ E G+R   +L+E      G Y+LLSNI+     G++AE  +VR  M  R +++ 
Sbjct: 241 RVHKSVERGKRAAEVLLELTSEIPGYYVLLSNIHAAA--GDHAEKAKVRDLMEARGVRKK 298

Query: 377 PGCSLIELDGVVHEFLAGDR-SHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEE 435
           PG S IE++   HEF AG++  H K Q+I +  + +   +K  GY  +T  V+  + E+E
Sbjct: 299 PGWSTIEINDRFHEFTAGEKFQHPKKQQILEELKRLSVLMKEDGYVPDTTEVLRLVNEDE 358

Query: 436 KETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRK 495
           KE+++ +HSEKLA+A GLI T PG+ +R+VKN+R+CSDCHSA K +SK+  RKI +RD  
Sbjct: 359 KESLLFFHSEKLAIACGLISTPPGTTLRVVKNLRVCSDCHSATKFISKITGRKIIVRDLN 418

Query: 496 HYHHFEDGSCSCLEYW 511
            +HH E+G CSC +YW
Sbjct: 419 RFHHTENGVCSCGDYW 434



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 115/283 (40%), Gaps = 74/283 (26%)

Query: 17  LIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP---QRND 73
           +I  Y+  GR+  A+  FD +   +  SWN+MI GY +NG     L LF  M    QR D
Sbjct: 1   MIAAYARHGRMIHAKTTFDAAPRRNSSSWNAMIAGYAQNGHCKAALHLFRAMNNEGQRCD 60

Query: 74  V--------------------SWNSILG--GLV--------------RFGSVDDACRVFN 97
           +                    S +SI    GLV              + G++DDA  VF+
Sbjct: 61  MVTFVAAIDACAGLSALVAGRSLHSIAAAAGLVAHVEISTAIVNMYAKCGNLDDATIVFS 120

Query: 98  QMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDY 157
            +  ++L+SW  +I+ F QNG    AL  F  M    L P++    S+LSAC+  G  ++
Sbjct: 121 SIRNKNLISWSTMITAFVQNGHTDRALDAFLAMNVDGLFPDAVTFKSILSACSHAGLFEH 180

Query: 158 GNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG-DKDVSAYTSAIFGLA 216
           G + +  +                                H +G    +  +   +  L 
Sbjct: 181 GFFHFDLL-------------------------------VHDFGITPTMDHFKCMVDLLG 209

Query: 217 MNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
            +G  +EA EL + M      PD +++  +L+AC     VE+G
Sbjct: 210 RSGRLLEAEELVQTMP---FVPDDVTWNTLLAACRVHKSVERG 249



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 16/150 (10%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ 70
           V +  +++  Y+ CG + DA  VF    + +++SW++MI  +V+NG     L  F  M  
Sbjct: 96  VEISTAIVNMYAKCGNLDDATIVFSSIRNKNLISWSTMITAFVQNGHTDRALDAFLAMNV 155

Query: 71  ----RNDVSWNSIL-----GGLVRFG--SVDDACRVFNQMPKRSLVSWVVLISGFAQNGR 119
                + V++ SIL      GL   G    D     F   P  ++  +  ++    ++GR
Sbjct: 156 DGLFPDAVTFKSILSACSHAGLFEHGFFHFDLLVHDFGITP--TMDHFKCMVDLLGRSGR 213

Query: 120 PKEALALFREMQSLDLEPNSAILVSLLSAC 149
             EA  L   +Q++   P+     +LL+AC
Sbjct: 214 LLEAEEL---VQTMPFVPDDVTWNTLLAAC 240


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 211/576 (36%), Positives = 309/576 (53%), Gaps = 74/576 (12%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DVFV N+LI  Y  C  V  AR VFD+    DVVSW S+ + YV+ G   +G+ +F +M 
Sbjct: 198 DVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMG 257

Query: 70  ----QRNDVSWNSIL----------------GGLVRFG-------------------SVD 90
               + N ++ +SIL                G  VR G                   SV 
Sbjct: 258 WSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVR 317

Query: 91  DACRVFNQMPKRSLVS-----------------------------------WVVLISGFA 115
           +A  VF+ MP R +VS                                   W  +I G  
Sbjct: 318 EARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCM 377

Query: 116 QNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI 175
           +NGR +EA+ +FR+MQ +  +PN   + S+L AC+    L  G  ++ Y+ +     D  
Sbjct: 378 ENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLT 437

Query: 176 LCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG 235
              AL+ MYAKCG ++L+  VF     KDV A+ + I   AM+G+  EA  LF+ M    
Sbjct: 438 STTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSR 497

Query: 236 ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA 295
           + P+S+++  VLS CSH   VE+G   F+SM   H ++P+ +HY+C+VD+  RAG L EA
Sbjct: 498 VQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEA 557

Query: 296 ENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVET 355
             FI  MPM+P    WG LL ACRV++N E+ +     L E + N+ G Y+ L NI V  
Sbjct: 558 YKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTA 617

Query: 356 LKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKI 415
                A +VR  M++R I + PGCS +++   VH F+ GD+S+ ++ +IY F +E+V+K+
Sbjct: 618 KMWSEASQVRILMKERGITKTPGCSWLQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKM 677

Query: 416 KNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCH 475
           K  GY  +T  V+ DI++EEK   +  HSEKLA+AFG++     S IR+ KN+RIC DCH
Sbjct: 678 KMAGYKPDTDYVLQDIDQEEKAESLCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCH 737

Query: 476 SAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           +A+K +SKV    I +RD   +HHF++G+CSC + W
Sbjct: 738 NAIKYMSKVVGVIIVVRDSLRFHHFKNGNCSCKDLW 773



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 107/241 (44%), Gaps = 2/241 (0%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           G  + A ++F+ +P+    +   LIS    +G   EA+ ++  +Q   ++P+  + ++  
Sbjct: 112 GDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAA 171

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
            ACA  G       V+    +  +  D  +  ALI  Y KC  ++ A +VF     +DV 
Sbjct: 172 KACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVV 231

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
           ++TS        G   +  ++F  M   G+ P+ ++  ++L AC+ L  ++ G    H  
Sbjct: 232 SWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSG-KEIHGF 290

Query: 267 FDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEM 326
              HG+   L   + +V L  +   + EA      MP + D V W  +L A   ++  E 
Sbjct: 291 AVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHR-DVVSWNGVLTAYFKNKEYEK 349

Query: 327 G 327
           G
Sbjct: 350 G 350



 Score = 42.7 bits (99), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 39/75 (52%)

Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
           LI +    G  + A Q+F +    D +  ++ I  L  +G S EA +++ +++ +GI PD
Sbjct: 104 LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 163

Query: 240 SISYIAVLSACSHLG 254
              ++A   AC+  G
Sbjct: 164 MPVFLAAAKACAVSG 178


>gi|449437940|ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Cucumis sativus]
          Length = 598

 Score =  361 bits (926), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 200/539 (37%), Positives = 302/539 (56%), Gaps = 40/539 (7%)

Query: 12  FVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM--- 68
            V ++LI  YS       +  VFDE+      +W+S+I+ + +N   L  L+ F +M   
Sbjct: 61  LVSHNLINLYSKTQLPLFSLQVFDETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLND 120

Query: 69  ---------P---------QRNDVS------------------WNSILGGLVRFGSVDDA 92
                    P         +R+DV                    +S++    + G + DA
Sbjct: 121 GVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDA 180

Query: 93  CRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQL 152
             +F++MP+R++VSW  +I G+AQ     EAL LF++    D++ N     S++  C+  
Sbjct: 181 RHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSSS 240

Query: 153 GALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAI 212
             L+ G  ++    K      S + +ALI +Y+KCG I+ A QVF     +++  + S +
Sbjct: 241 TFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSML 300

Query: 213 FGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGI 272
              A + H+   F LFE M + G+ P+ IS+++VL ACSH G VEKG  YF  M D +GI
Sbjct: 301 IACAQHAHTQRVFGLFEEMGNVGMKPNFISFLSVLYACSHAGLVEKGREYFSLMRD-YGI 359

Query: 273 KPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGN 332
           +PE +HYA +VDLLGRAG L+EA + I  MPM+P   +WG LL  CR+H++ EM   + +
Sbjct: 360 EPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTGCRIHKDTEMAAFVAD 419

Query: 333 MLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFL 392
            ++E D +  G ++LLSN Y    + E A  +RK +R R +K+  G S +E    VH F 
Sbjct: 420 RILEMDSSSSGLHVLLSNAYAAAGRYEEAARMRKMLRDRGVKKETGLSWVEEGNKVHTFT 479

Query: 393 AGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFG 452
           AGDRSH K  EIY+  EE+ ++++  GY  +T  V+  ++ EEK   I YHSE+LA+AFG
Sbjct: 480 AGDRSHAKWVEIYEKLEELEEEMEKAGYVADTSFVLRAVDGEEKNETIRYHSERLAIAFG 539

Query: 453 LICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           LI   PG  IR++KN+R+C DCH+A+K +SK   R + +RD   +H FEDG CSC +YW
Sbjct: 540 LITFPPGRPIRVMKNLRVCGDCHAAIKFMSKCCGRVLIVRDNNRFHRFEDGKCSCGDYW 598



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 126/261 (48%), Gaps = 43/261 (16%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + VK  +  DVFV +SL+  Y+ CG + DAR +FDE  + +VVSW+ MI GY +  + +E
Sbjct: 151 LAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVE 210

Query: 61  GLKLFDKM----PQRNDVSWNSI-----------LGGLV--------------------- 84
            L LF +        ND +++S+           LG L+                     
Sbjct: 211 ALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALIS 270

Query: 85  ---RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G ++ A +VF+++P R+L  W  ++   AQ+   +    LF EM ++ ++PN   
Sbjct: 271 LYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFIS 330

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
            +S+L AC+  G ++ G   +S ++   I+ ++   A+L+D+  + G +  A+ V     
Sbjct: 331 FLSVLYACSHAGLVEKGREYFSLMRDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMP 390

Query: 202 DKDVSAYTSAIFGLAMNGHSI 222
            +     T +++G  + G  I
Sbjct: 391 MRP----TESVWGALLTGCRI 407



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 90/209 (43%), Gaps = 15/209 (7%)

Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
            E N   + +LL +  +  +L  G  ++++I K  ++   ++   LI++Y+K      ++
Sbjct: 21  FEQNYRQICNLLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSL 80

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
           QVF     K  + ++S I   A N   + A + F  M + G+ PD   Y +   AC  L 
Sbjct: 81  QVFDETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLR 140

Query: 255 WVEKGFYYFHSMFDVHGIKPELDHY------ACMVDLLGRAGLLEEAENFIASMPMKPDN 308
             + G         VH +  +  +Y      + +VD+  + G + +A +    MP + + 
Sbjct: 141 RSDVG-------KSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPER-NV 192

Query: 309 VIW-GTLLGACRVHRNAEMGQRIGNMLIE 336
           V W G + G  ++    E        LIE
Sbjct: 193 VSWSGMIYGYAQLDDGVEALTLFKQALIE 221


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  361 bits (926), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 211/576 (36%), Positives = 309/576 (53%), Gaps = 74/576 (12%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DVFV N+LI  Y  C  V  AR VFD+    DVVSW S+ + YV+ G   +G+ +F +M 
Sbjct: 112 DVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMG 171

Query: 70  ----QRNDVSWNSIL----------------GGLVRFG-------------------SVD 90
               + N ++ +SIL                G  VR G                   SV 
Sbjct: 172 WSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVR 231

Query: 91  DACRVFNQMPKRSLVS-----------------------------------WVVLISGFA 115
           +A  VF+ MP R +VS                                   W  +I G  
Sbjct: 232 EARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCM 291

Query: 116 QNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI 175
           +NGR +EA+ +FR+MQ +  +PN   + S+L AC+    L  G  ++ Y+ +     D  
Sbjct: 292 ENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLT 351

Query: 176 LCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG 235
              AL+ MYAKCG ++L+  VF     KDV A+ + I   AM+G+  EA  LF+ M    
Sbjct: 352 STTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSR 411

Query: 236 ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA 295
           + P+S+++  VLS CSH   VE+G   F+SM   H ++P+ +HY+C+VD+  RAG L EA
Sbjct: 412 VQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEA 471

Query: 296 ENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVET 355
             FI  MPM+P    WG LL ACRV++N E+ +     L E + N+ G Y+ L NI V  
Sbjct: 472 YKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTA 531

Query: 356 LKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKI 415
                A +VR  M++R I + PGCS +++   VH F+ GD+S+ ++ +IY F +E+V+K+
Sbjct: 532 KMWSEASQVRILMKERGITKTPGCSWLQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKM 591

Query: 416 KNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCH 475
           K  GY  +T  V+ DI++EEK   +  HSEKLA+AFG++     S IR+ KN+RIC DCH
Sbjct: 592 KMAGYKPDTDYVLQDIDQEEKAESLCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCH 651

Query: 476 SAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           +A+K +SKV    I +RD   +HHF++G+CSC + W
Sbjct: 652 NAIKYMSKVVGVIIVVRDSLRFHHFKNGNCSCKDLW 687



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 107/241 (44%), Gaps = 2/241 (0%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           G  + A ++F+ +P+    +   LIS    +G   EA+ ++  +Q   ++P+  + ++  
Sbjct: 26  GDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAA 85

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
            ACA  G       V+    +  +  D  +  ALI  Y KC  ++ A +VF     +DV 
Sbjct: 86  KACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVV 145

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
           ++TS        G   +  ++F  M   G+ P+ ++  ++L AC+ L  ++ G    H  
Sbjct: 146 SWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSG-KEIHGF 204

Query: 267 FDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEM 326
              HG+   L   + +V L  +   + EA      MP + D V W  +L A   ++  E 
Sbjct: 205 AVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHR-DVVSWNGVLTAYFKNKEYEK 263

Query: 327 G 327
           G
Sbjct: 264 G 264



 Score = 42.4 bits (98), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 39/75 (52%)

Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
           LI +    G  + A Q+F +    D +  ++ I  L  +G S EA +++ +++ +GI PD
Sbjct: 18  LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 77

Query: 240 SISYIAVLSACSHLG 254
              ++A   AC+  G
Sbjct: 78  MPVFLAAAKACAVSG 92


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  361 bits (926), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 197/549 (35%), Positives = 315/549 (57%), Gaps = 40/549 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +K  +  D++V  +L++ Y+  G + +A+  F+E    D++ W+ MI+ Y ++ +  E L
Sbjct: 232 LKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEAL 291

Query: 63  KLFDKMPQR-----NDVSWNSILG---------------------GL------------- 83
           +LF +M Q      N+ ++ S+L                      GL             
Sbjct: 292 ELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDV 351

Query: 84  -VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G ++++ ++F    +++ V+W  +I G+ Q G  ++AL LF  M  LD++P     
Sbjct: 352 YAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTY 411

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S+L A A L AL+ G  ++S   K     DS++  +LIDMYAKCG ID A   F     
Sbjct: 412 SSVLRASASLVALEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDK 471

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           +D  ++ + I G +++G  +EA  LF+ M+     P+ ++++ VLSACS+ G ++KG  +
Sbjct: 472 QDEVSWNALICGYSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAH 531

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           F SM   +GI+P ++HY CMV LLGR+G  +EA   I  +P +P  ++W  LLGAC +H+
Sbjct: 532 FKSMLQDYGIEPCIEHYTCMVWLLGRSGQFDEAVKLIGEIPFQPSVMVWRALLGACVIHK 591

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           N ++G+     ++E +   D  ++LLSN+Y    + +N   VRK M+K+K+K+ PG S +
Sbjct: 592 NLDLGKVCAQRVLEMEPQDDATHVLLSNMYATAKRWDNVAYVRKNMKKKKVKKEPGLSWV 651

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           E  GVVH F  GD SH   + I+   E + KK ++ GY  +   V+ D+E++EKE ++  
Sbjct: 652 ENQGVVHYFTVGDTSHPNIKLIFAMLEWLYKKTRDAGYVPDCSVVLLDVEDDEKERLLWM 711

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSE+LALAFGLI    G  IRI+KN+RIC DCH+ +KLVSK+ +R+I IRD   +HHF  
Sbjct: 712 HSERLALAFGLIQIPSGCSIRIIKNLRICVDCHAVIKLVSKIVQREIVIRDINRFHHFRQ 771

Query: 503 GSCSCLEYW 511
           G CSC +YW
Sbjct: 772 GVCSCGDYW 780



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 156/354 (44%), Gaps = 42/354 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEI--- 58
           ++K+  + D+F +N L+  Y   G + DA  +FDE    + VS+ ++  G+ R+ +    
Sbjct: 29  ILKHGASLDLFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGFSRSHQFQRA 88

Query: 59  --------LEG-----------LKLFDKMP-----------------QRNDVSWNSILGG 82
                    EG           LKL   M                  Q +     +++  
Sbjct: 89  RRLLLRLFREGYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAFVGTALIDA 148

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
               G+VD A +VF+ +  + +VSW  +++ +A+N   +++L LF +M+ +   PN+  +
Sbjct: 149 YSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPNNFTI 208

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            + L +C  L A   G  V+    K C   D  +  AL+++Y K G I  A Q F     
Sbjct: 209 SAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPK 268

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMK-SKGISPDSISYIAVLSACSHLGWVEKGFY 261
            D+  ++  I   A +  S EA ELF  M+ S  + P++ ++ +VL AC+ L  +  G  
Sbjct: 269 DDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLG-N 327

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
             HS     G+   +     ++D+  + G +E +         K + V W T++
Sbjct: 328 QIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEK-NEVAWNTII 380



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 136/286 (47%), Gaps = 18/286 (6%)

Query: 40  LDVVSWNSMINGYVRNGEILEGLKLFDKMPQRND----VSWNSILGGLVRFGSVDDACRV 95
           +D  S+ +M+   +RN +   G  L   + +        + N +L   V FG ++DA ++
Sbjct: 1   MDSHSYANMLQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKL 60

Query: 96  FNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGAL 155
           F++MP  + VS+V L  GF+++ + + A  L   +     E N  +  +LL     +   
Sbjct: 61  FDEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLA 120

Query: 156 DYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGL 215
           D    V++Y+ K   + D+ +  ALID Y+ CG++D A QVF     KD+ ++T  +   
Sbjct: 121 DTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACY 180

Query: 216 AMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE 275
           A N    ++  LF  M+  G  P++ +  A L +C+       G   F     VHG   +
Sbjct: 181 AENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCN-------GLEAFKVGKSVHGCALK 233

Query: 276 L----DHYA--CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
           +    D Y    +++L  ++G + EA+ F   MP K D + W  ++
Sbjct: 234 VCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMP-KDDLIPWSLMI 278



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 93/196 (47%), Gaps = 39/196 (19%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K     +VFV N+L+  Y+ CG + ++  +F  S + + V+WN++I GYV+ G+  + 
Sbjct: 333 VLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKA 392

Query: 62  LKLFDKM--------------------------PQR-------------NDVSWNSILGG 82
           L LF  M                          P R             + V  NS++  
Sbjct: 393 LNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSVVANSLIDM 452

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G +DDA   F++M K+  VSW  LI G++ +G   EAL LF  MQ  + +PN    
Sbjct: 453 YAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQSNSKPNKLTF 512

Query: 143 VSLLSACAQLGALDYG 158
           V +LSAC+  G LD G
Sbjct: 513 VGVLSACSNAGLLDKG 528



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 12/167 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + +K  +  D  V NSLI  Y+ CGR+ DAR  FD+ D  D VSWN++I GY  +G  +E
Sbjct: 433 LTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGME 492

Query: 61  GLKLFDKMPQRND----VSWNSILGGLVRFGSVDDACRVFNQMPK-----RSLVSWVVLI 111
            L LFD M Q N     +++  +L      G +D     F  M +       +  +  ++
Sbjct: 493 ALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMV 552

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
               ++G+  EA+ L  E   +  +P+  +  +LL AC     LD G
Sbjct: 553 WLLGRSGQFDEAVKLIGE---IPFQPSVMVWRALLGACVIHKNLDLG 596


>gi|413946633|gb|AFW79282.1| hypothetical protein ZEAMMB73_599854 [Zea mays]
          Length = 863

 Score =  361 bits (926), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 210/547 (38%), Positives = 301/547 (55%), Gaps = 44/547 (8%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNG---E 57
           + VK  FA DV   NSLIQ Y+  G +R AR VF   D  D ++W +MI+GY +NG   +
Sbjct: 315 LAVKRGFAGDVAFCNSLIQMYASLGMMRQARTVFSRMDTRDAMTWTAMISGYEKNGFPDK 374

Query: 58  ILE--------------------------------GLKLFDKMPQRNDVSW----NSILG 81
            LE                                G+KL +    +  +S+    N+IL 
Sbjct: 375 ALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFISYIVVTNAILE 434

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              +   +D A  VF  M ++ +VSW  +I+GF  N R  EAL  FR M + D++PNS  
Sbjct: 435 MYAKSKRIDKAIEVFKCMHEKDVVSWSSMIAGFCFNHRNFEALYYFRHMLA-DVKPNSVT 493

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
            ++ L+ACA  GAL  G  +++++ +  I+ +  L  ALID+Y KCG    A   F ++G
Sbjct: 494 FIAALAACAATGALRSGKEIHAHVLRCGIEYEGYLPNALIDLYVKCGQTGYAWAQFCAHG 553

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
            KDV ++   I G   +GH   A   F  M   G  PD ++++A+L ACS  G V +G+ 
Sbjct: 554 AKDVVSWNIMIAGFVAHGHGDTALSFFNQMVKIGECPDEVTFVALLCACSRGGMVSEGWE 613

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            FHSM + + I P L HYACMVDLL RAG L EA NFI  MP+ PD  +WG LL  CR+H
Sbjct: 614 LFHSMTEKYSIVPNLKHYACMVDLLSRAGQLTEAYNFINEMPITPDAAVWGALLNGCRIH 673

Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
           R+ E+G+     ++  + N  G ++LL ++Y +    +    VRKTMR++ +    GCS 
Sbjct: 674 RHVELGELAAKYVLALEPNDAGYHVLLCDLYADACLWDKLARVRKTMREKGLDHDSGCSW 733

Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGY-NVETRSVMFDIEEEEKETVI 440
           +E+ GVVH FL  D SH + +EI    E I +++K  GY  VE+       +E  K+ + 
Sbjct: 734 VEVKGVVHAFLTDDESHPQIREINTVLEGIYERMKASGYAPVESHC---PEDEVLKDDIF 790

Query: 441 GYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF 500
             HSE+LA+AFGLI T PG+ I + KN   C  CH  +K++S + +R I +RD K  HHF
Sbjct: 791 CGHSERLAVAFGLINTTPGTSISVTKNQYTCQSCHRILKMISNIVRRDIIVRDSKQLHHF 850

Query: 501 EDGSCSC 507
           +DGSCSC
Sbjct: 851 KDGSCSC 857



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 88/282 (31%), Positives = 143/282 (50%), Gaps = 40/282 (14%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V++  F  +V V N+L+  Y+ CG V  AR VFD    +D +SWN+MI G+  NGE   G
Sbjct: 215 VLRFGFGEEVDVLNALMTMYAKCGDVMAARKVFDSMTVMDCISWNAMIAGHFENGECNAG 274

Query: 62  LKLFDKM----PQRN---------------DVSW--------------------NSILGG 82
           L+LF  M     Q N               DV++                    NS++  
Sbjct: 275 LELFLTMLHDEVQPNLMTITSVTVASGLLSDVTFAKEMHGLAVKRGFAGDVAFCNSLIQM 334

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
               G +  A  VF++M  R  ++W  +ISG+ +NG P +AL ++  M+  ++ P+   +
Sbjct: 335 YASLGMMRQARTVFSRMDTRDAMTWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDITI 394

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S L+ACA LG+LD G  ++   + K      ++  A+++MYAK   ID A++VF    +
Sbjct: 395 ASALAACACLGSLDVGVKLHELAESKGFISYIVVTNAILEMYAKSKRIDKAIEVFKCMHE 454

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYI 244
           KDV +++S I G   N  + EA   F +M +  + P+S+++I
Sbjct: 455 KDVVSWSSMIAGFCFNHRNFEALYYFRHMLAD-VKPNSVTFI 495



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 156/366 (42%), Gaps = 42/366 (11%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM---PQR 71
           N+++      G    A  VF +  + DV SWN M+ GY ++G + E L L+ +M     R
Sbjct: 127 NAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKSGLLDEALDLYHRMMWAGVR 186

Query: 72  NDV--------------SW----------------------NSILGGLVRFGSVDDACRV 95
            DV               W                      N+++    + G V  A +V
Sbjct: 187 PDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFGEEVDVLNALMTMYAKCGDVMAARKV 246

Query: 96  FNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGAL 155
           F+ M     +SW  +I+G  +NG     L LF  M   +++PN   + S+  A   L  +
Sbjct: 247 FDSMTVMDCISWNAMIAGHFENGECNAGLELFLTMLHDEVQPNLMTITSVTVASGLLSDV 306

Query: 156 DYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGL 215
            +   ++    K+    D   C +LI MYA  G +  A  VF     +D   +T+ I G 
Sbjct: 307 TFAKEMHGLAVKRGFAGDVAFCNSLIQMYASLGMMRQARTVFSRMDTRDAMTWTAMISGY 366

Query: 216 AMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE 275
             NG   +A E++  M+   +SPD I+  + L+AC+ LG ++ G    H + +  G    
Sbjct: 367 EKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGV-KLHELAESKGFISY 425

Query: 276 LDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL-GACRVHRNAEMGQRIGNML 334
           +     ++++  ++  +++A      M  K D V W +++ G C  HRN E      +ML
Sbjct: 426 IVVTNAILEMYAKSKRIDKAIEVFKCMHEK-DVVSWSSMIAGFCFNHRNFEALYYFRHML 484

Query: 335 IESDQN 340
            +   N
Sbjct: 485 ADVKPN 490


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  361 bits (926), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 190/548 (34%), Positives = 304/548 (55%), Gaps = 39/548 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +KN F  ++ V N+LI  Y+ C  +      FD     D++SW +   GY +N   L+ L
Sbjct: 288 IKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQAL 347

Query: 63  KLFDKMPQRN-------------------------DVSWNSILGGLV------------- 84
           +L  ++                             ++   +I GGL              
Sbjct: 348 ELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGLSDPVLQNTIIDVYG 407

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
             G +D A R+F  +  + +VSW  +IS +  NG   +AL +F  M+   LEP+   LVS
Sbjct: 408 ECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVS 467

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           +LSA   L  L  G  ++ +I +K   L+  +   L+DMYA+CGS++ A ++F    +++
Sbjct: 468 ILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYARCGSVEDAYKIFTCTKNRN 527

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           +  +T+ I    M+G+   A ELF  MK + I PD I+++A+L ACSH G V +G  +  
Sbjct: 528 LILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYACSHSGLVNEGKSFLE 587

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
            M   + ++P  +HY C+VDLLGR   LEEA   + SM  +P   +W  LLGACR+H N 
Sbjct: 588 IMKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEPTPEVWCALLGACRIHSNK 647

Query: 325 EMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIEL 384
           E+G+     L+E D ++ G Y+L+SN++    + ++ EEVR  M+   + + PGCS IE+
Sbjct: 648 EIGEVAAEKLLELDLDNPGNYVLVSNVFAANGRWKDVEEVRMRMKGSGLTKNPGCSWIEV 707

Query: 385 DGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNY-GYNVETRSVMFDIEEEEKETVIGYH 443
              +H FL+ D+ H +  +IYQ   ++ +K+K   GY  +T+ V+ ++ EEEK  ++  H
Sbjct: 708 GNKIHAFLSRDKLHPECDKIYQKLAQVTEKLKREGGYVAQTKFVLHNVGEEEKVQMLYGH 767

Query: 444 SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
           SE+LA+A+GL+ T  G+ IR+ KN+R+C DCHS   LVS+ F+R++ +RD   +HHF+DG
Sbjct: 768 SERLAIAYGLLATAEGTPIRVTKNLRVCGDCHSFCTLVSRFFERELIVRDASRFHHFKDG 827

Query: 504 SCSCLEYW 511
            CSC ++W
Sbjct: 828 MCSCGDFW 835



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 101/358 (28%), Positives = 170/358 (47%), Gaps = 58/358 (16%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDES-DDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           VFV NSL+  Y+ C  +  AR +FD      DVVSWNS+I+ Y  NG   E L LF +M 
Sbjct: 93  VFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYSGNGMCTEALCLFSEML 152

Query: 70  QRNDVS---------------------------------------WNSILGGLVRFGSVD 90
           +   V+                                        N+++   VRFG + 
Sbjct: 153 KAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALVAMYVRFGKMP 212

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           +A  +F  +  + +V+W  +++GF QNG   EAL  F ++Q+ DL+P+   ++S++ A  
Sbjct: 213 EAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASG 272

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
           +LG L  G  +++Y  K     + ++   LIDMYAKC  +    + F     KD+ ++T+
Sbjct: 273 RLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTT 332

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
           A  G A N   ++A EL   ++ +G+  D+    ++L AC  L  + K       + ++H
Sbjct: 333 AAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGK-------IKEIH 385

Query: 271 GIK-------PELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           G         P L +   ++D+ G  G+++ A     S+  K D V W +++ +C VH
Sbjct: 386 GYTIRGGLSDPVLQN--TIIDVYGECGIIDYAVRIFESIECK-DVVSWTSMI-SCYVH 439



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 99/363 (27%), Positives = 174/363 (47%), Gaps = 42/363 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K+    DV+V N+L+  Y   G++ +A  +F   +  D+V+WNSM+ G+++NG   E 
Sbjct: 186 ILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEA 245

Query: 62  LKLFDKMP----QRNDVSWNSILGGLVRFGSVDDA------------------------- 92
           L+ F  +     + + VS  SI+    R G + +                          
Sbjct: 246 LEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDM 305

Query: 93  -----C-----RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
                C     R F+ M  + L+SW    +G+AQN    +AL L R++Q   ++ ++ ++
Sbjct: 306 YAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMI 365

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            S+L AC  L  L     ++ Y  +  +  D +L   +ID+Y +CG ID A+++F S   
Sbjct: 366 GSILLACRGLNCLGKIKEIHGYTIRGGLS-DPVLQNTIIDVYGECGIIDYAVRIFESIEC 424

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           KDV ++TS I     NG + +A E+F +MK  G+ PD ++ +++LSA   L  ++KG   
Sbjct: 425 KDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKG-KE 483

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
            H      G   E      +VD+  R G +E+A   I +     + ++W  ++ A  +H 
Sbjct: 484 IHGFIIRKGFILEGSISNTLVDMYARCGSVEDAYK-IFTCTKNRNLILWTAMISAYGMHG 542

Query: 323 NAE 325
             E
Sbjct: 543 YGE 545



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 147/319 (46%), Gaps = 50/319 (15%)

Query: 20  FYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNS- 78
            Y  CG V DA  +FD+  +  + +WN+M+ GYV NGE L  L+++ +M     VS++S 
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLG-VSFDSY 59

Query: 79  --------------------ILGGLVRFG-------------------SVDDACRVFNQM 99
                               I G  +++G                    ++ A ++F++M
Sbjct: 60  TFPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRM 119

Query: 100 PKRS-LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
             R+ +VSW  +IS ++ NG   EAL LF EM    +  N+    + L AC     +  G
Sbjct: 120 YVRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLG 179

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
             +++ I K    LD  +  AL+ MY + G +  A  +F +   KD+  + S + G   N
Sbjct: 180 MQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQN 239

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG----FYYFHSMFDVHGI-- 272
           G   EA E F ++++  + PD +S I+++ A   LG++  G     Y   + FD + +  
Sbjct: 240 GLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVG 299

Query: 273 KPELDHYA--CMVDLLGRA 289
              +D YA  C +   GRA
Sbjct: 300 NTLIDMYAKCCCMSYGGRA 318



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 112/234 (47%), Gaps = 7/234 (2%)

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
           + GSV DA  +F++M +RS+ +W  ++ G+  NG    AL ++REM+ L +  +S     
Sbjct: 4   KCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTFPV 63

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVF-HSYGDK 203
           LL AC  +  L  G  ++    K        +  +L+ +YAKC  I+ A ++F   Y   
Sbjct: 64  LLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRN 123

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           DV ++ S I   + NG   EA  LF  M   G+  ++ ++ A L AC    +++ G    
Sbjct: 124 DVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIH 183

Query: 264 HSMFDVHGIKPELDHYA--CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
            ++     +   LD Y    +V +  R G + EA     ++  K D V W ++L
Sbjct: 184 AAILKSGRV---LDVYVANALVAMYVRFGKMPEAAVIFGNLEGK-DIVTWNSML 233



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 13/141 (9%)

Query: 183 MYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSIS 242
           MY KCGS+  A  +F    ++ +  + + + G   NG ++ A E++  M+  G+S DS +
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 243 YIAVLSACSHLGWVEKGFYYFHSMFDVHG--IKPELDHYACMVD----LLGRAGLLEEAE 296
           +  +L AC   G VE  F       ++HG  IK   D +  +V+    L  +   +  A 
Sbjct: 61  FPVLLKAC---GIVEDLF----CGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGAR 113

Query: 297 NFIASMPMKPDNVIWGTLLGA 317
                M ++ D V W +++ A
Sbjct: 114 KLFDRMYVRNDVVSWNSIISA 134



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 72/157 (45%), Gaps = 12/157 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++  F  +  + N+L+  Y+ CG V DA  +F  + + +++ W +MI+ Y  +G     
Sbjct: 488 IIRKGFILEGSISNTLVDMYARCGSVEDAYKIFTCTKNRNLILWTAMISAYGMHGYGEAA 547

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMP-KRSLVSW----VVLIS 112
           ++LF +M       + +++ ++L      G V++       M  +  L  W      L+ 
Sbjct: 548 VELFMRMKDEKIIPDHITFLALLYACSHSGLVNEGKSFLEIMKCEYQLEPWPEHYTCLVD 607

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
              +    +EA  + + MQ+   EP   +  +LL AC
Sbjct: 608 LLGRRNCLEEAYQIVKSMQN---EPTPEVWCALLGAC 641


>gi|302760085|ref|XP_002963465.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
 gi|300168733|gb|EFJ35336.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
          Length = 829

 Score =  361 bits (926), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 196/554 (35%), Positives = 312/554 (56%), Gaps = 47/554 (8%)

Query: 5   NSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDL--DVVSWNSMINGYVRNGEILEGL 62
           + F  ++ V N+++  Y  CG V +AR VFD  D+   DVVSWN M++ YV N    + +
Sbjct: 276 SGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRGKDAI 335

Query: 63  KLFDKMPQRND-VSWNSILG--------GLVRF--------------------------- 86
           +L+ +M  R D V++ S+L         GL R                            
Sbjct: 336 QLYQRMQLRADKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKC 395

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD-------LEPNS 139
           GS  +A  VF++M +RS++SW  +IS + +     EA  LF++M  L+       ++P++
Sbjct: 396 GSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDA 455

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
              V++L+ACA + AL+ G  V        +  D  +  A++++Y KCG I+   ++F  
Sbjct: 456 LAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEGRRIFDG 515

Query: 200 YGDK-DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEK 258
              + DV  + + I   A  G S EA +LF  M+ +G+ PDS S++++L ACSH G  ++
Sbjct: 516 VCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACSHTGLEDQ 575

Query: 259 GFYYFHSMF-DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
           G  YF SM  +   +   + H+ C+ DLLGR G L+EAE F+  +P+KPD V W +LL A
Sbjct: 576 GKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAA 635

Query: 318 CRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAP 377
           CR HR+ +  + + N L+  +      Y+ LSNIY E  K     +VRK M ++ +K+  
Sbjct: 636 CRNHRDLKRAKEVANKLLRLEPRCATGYVALSNIYAELQKWHAVAKVRKFMAEQGVKKER 695

Query: 378 GCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKE 437
           G S IE+   +H+F  GD +H + +EI +   ++  ++K  GY  +T+ V+  ++E+EKE
Sbjct: 696 GVSTIEIGKYMHDFATGDDAHPRNREIREELAKLHSQMKECGYVPDTKMVLHFVDEQEKE 755

Query: 438 TVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHY 497
            ++  HSE+LA+A GLI T  G+ +R+ KN+R+CSDCH+A KL+SK+  RKI +RD   +
Sbjct: 756 RLLFSHSERLAIALGLISTPLGTPLRVTKNLRVCSDCHTATKLISKIAGRKIVVRDPTRF 815

Query: 498 HHFEDGSCSCLEYW 511
           H F+DG CSC +YW
Sbjct: 816 HLFKDGKCSCQDYW 829



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 165/365 (45%), Gaps = 53/365 (14%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDL-DVVSWNSMINGYVRNGEIL 59
           MVV +    D  V N+L+  Y  CG +  A+ VF + +   +V+SW+ M   +  +G + 
Sbjct: 170 MVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIMAGAHALHGNVW 229

Query: 60  EGLKLFDKM---------------------P------------------QRNDVSWNSIL 80
           E L+ F  M                     P                  +   +  N+++
Sbjct: 230 EALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRLIHSCIALSGFESELLVANAVM 289

Query: 81  GGLVRFGSVDDACRVFNQMPK--RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPN 138
               R G+V++A +VF+ M +  R +VSW +++S +  N R K+A+ L++ MQ   L  +
Sbjct: 290 TMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRGKDAIQLYQRMQ---LRAD 346

Query: 139 SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH 198
               VSLLSAC+    +  G  ++  I    ++ + I+  AL+ MYAKCGS   A  VF 
Sbjct: 347 KVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFD 406

Query: 199 SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM-------KSKGISPDSISYIAVLSACS 251
               + + ++T+ I          EA  LF+ M        S+ + PD+++++ +L+AC+
Sbjct: 407 KMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNACA 466

Query: 252 HLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIW 311
            +  +E+G           G+  +      +V+L G+ G +EE       +  +PD  +W
Sbjct: 467 DVSALEQGKMVSEQAASC-GLSSDKAVGTAVVNLYGKCGEIEEGRRIFDGVCSRPDVQLW 525

Query: 312 GTLLG 316
             ++ 
Sbjct: 526 NAMIA 530



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 132/282 (46%), Gaps = 8/282 (2%)

Query: 43  VSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLV-----RFGSVDDACRVFN 97
            ++  ++    R   + EG K+     + N +  N ILG  +        S  DA   F+
Sbjct: 44  ATYARLLQRCARAQALPEGRKIHSLAVKHNLLPGNLILGNHIVSMYAHCDSPGDAKAAFD 103

Query: 98  QMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDY 157
            + +R+L SW  L++ FA +G+ KE L     M+   + P++   ++ L +C    +L  
Sbjct: 104 ALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCGDPESLRD 163

Query: 158 GNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY-GDKDVSAYTSAIFGLA 216
           G  ++  +    +++D  +  AL++MY KCGS+  A +VF      ++V +++      A
Sbjct: 164 GIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIMAGAHA 223

Query: 217 MNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPEL 276
           ++G+  EA   F  M   GI     + + +LSACS    V+ G    HS   + G + EL
Sbjct: 224 LHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDG-RLIHSCIALSGFESEL 282

Query: 277 DHYACMVDLLGRAGLLEEAENFIASMPMKPDNVI-WGTLLGA 317
                ++ + GR G +EEA     +M     +V+ W  +L A
Sbjct: 283 LVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSA 324



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 123/296 (41%), Gaps = 79/296 (26%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +V +    +V V N+L+  Y+ CG   +AR VFD+ +   ++SW ++I+ YVR   + E 
Sbjct: 373 IVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEA 432

Query: 62  LKLFDKM--------PQR---NDVSWNSIL-----------GGLV--------------- 84
             LF +M         QR   + +++ +IL           G +V               
Sbjct: 433 CHLFQQMLELEKNGSSQRVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAV 492

Query: 85  ---------RFGSVDDACRVFNQMPKRSLVS-WVVLISGFAQNGRPKEALALFREMQSLD 134
                    + G +++  R+F+ +  R  V  W  +I+ +AQ G+  EAL LF  M+   
Sbjct: 493 GTAVVNLYGKCGEIEEGRRIFDGVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEG 552

Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
           + P+S   VS+L AC+  G  D G   ++                   M  +  ++   +
Sbjct: 553 VRPDSFSFVSILLACSHTGLEDQGKSYFT------------------SMTTEYRNVTRTI 594

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250
           Q F    D            L   G   EA E  E +  K   PD++++ ++L+AC
Sbjct: 595 QHFGCVADL-----------LGRGGRLKEAEEFLEKLPVK---PDAVAWTSLLAAC 636


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  360 bits (925), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 190/520 (36%), Positives = 291/520 (55%), Gaps = 39/520 (7%)

Query: 31  RWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQR----NDVSWNSIL------ 80
           R VFDE  + DVVSWN+++ G    G   E L    KM +     +  + +++L      
Sbjct: 124 RKVFDEMIERDVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAEC 183

Query: 81  ----------GGLVRFG-------------------SVDDACRVFNQMPKRSLVSWVVLI 111
                     G   R G                     D + +VF+ +P R  + W  L+
Sbjct: 184 ADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLL 243

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK 171
           +G AQNG  +EAL +FR M    + P      SL+  C  L +L +G  +++Y+     +
Sbjct: 244 AGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGFE 303

Query: 172 LDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM 231
            +  + ++LIDMY KCG I +A  +F      DV ++T+ I G A++G + EA  LFE M
Sbjct: 304 DNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHGPAREALVLFERM 363

Query: 232 KSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGL 291
           +     P+ I+++AVL+ACSH G V+KG+ YF SM + +GI P L+H+A + D LGRAG 
Sbjct: 364 ELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFAALADTLGRAGE 423

Query: 292 LEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNI 351
           L+EA NFI+ M +KP   +W TLL ACRVH+N  + + +   ++E +    G +++LSN+
Sbjct: 424 LDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIMELEPRSIGSHVVLSNM 483

Query: 352 YVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEI 411
           Y  + +   A  +R++MRK+ +K+ P CS IE+   +H F+A DRSH     I       
Sbjct: 484 YSASGRWNEAAHLRESMRKKGMKKDPACSWIEVKSKLHVFVAHDRSHPWYDRIIDALNAF 543

Query: 412 VKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRIC 471
            +++   G+   T  V  DIEEE K  V+  HSEKLA+ FG+I T  G+ IR++KN+R+C
Sbjct: 544 SEQMAREGHVPNTEDVFQDIEEEHKSYVLCGHSEKLAIVFGIISTPAGTKIRVMKNLRVC 603

Query: 472 SDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            DCH+  K +SK+  R+I +RD   +HHF+DG+CSC ++W
Sbjct: 604 IDCHTVTKFISKLADREIVVRDANRFHHFKDGNCSCGDFW 643



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 123/267 (46%), Gaps = 9/267 (3%)

Query: 62  LKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQN 117
           L L+ K+P        V+   + G    F SV    +VF++M +R +VSW  L+ G A+ 
Sbjct: 92  LNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVR---KVFDEMIERDVVSWNTLVLGCAEE 148

Query: 118 GRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILC 177
           GR  EAL   R+M      P+S  L ++L   A+   +  G  V+ +  +     D  + 
Sbjct: 149 GRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHGFAFRNGFDSDVFVG 208

Query: 178 AALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGIS 237
           ++LIDMYA C   D +++VF +   +D   + S + G A NG   EA  +F  M   G+ 
Sbjct: 209 SSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVR 268

Query: 238 PDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAEN 297
           P  +++ +++  C +L  +  G    H+     G +  +   + ++D+  + G +  A  
Sbjct: 269 PVPVTFSSLIPVCGNLASLRFG-KQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHC 327

Query: 298 FIASMPMKPDNVIWGTLLGACRVHRNA 324
               M   PD V W  ++    +H  A
Sbjct: 328 IFDKMS-SPDVVSWTAMIMGYALHGPA 353



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 108/231 (46%), Gaps = 42/231 (18%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           +N F  DVFV +SLI  Y+ C R   +  VFD     D + WNS++ G  +NG + E L 
Sbjct: 198 RNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEALG 257

Query: 64  LFDKMPQRN----DVSWNSIL---GGL--VRFGS---------------------VDDAC 93
           +F +M Q       V+++S++   G L  +RFG                      +D  C
Sbjct: 258 IFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFISSSLIDMYC 317

Query: 94  R---------VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
           +         +F++M    +VSW  +I G+A +G  +EAL LF  M+  + +PN    ++
Sbjct: 318 KCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLA 377

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSIL--CAALIDMYAKCGSIDLA 193
           +L+AC+  G +D G W Y         +   L   AAL D   + G +D A
Sbjct: 378 VLTACSHAGLVDKG-WKYFKSMSNHYGIVPTLEHFAALADTLGRAGELDEA 427



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 75/157 (47%), Gaps = 12/157 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+   F  +VF+ +SLI  Y  CG +  A  +FD+    DVVSW +MI GY  +G   E 
Sbjct: 297 VICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHGPAREA 356

Query: 62  LKLFDKM----PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLIS 112
           L LF++M     + N +++ ++L      G VD   + F  M        +L  +  L  
Sbjct: 357 LVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFAALAD 416

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
              + G   EA     +MQ   ++P +++  +LL AC
Sbjct: 417 TLGRAGELDEAYNFISKMQ---IKPTASVWSTLLRAC 450



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/254 (21%), Positives = 106/254 (41%), Gaps = 27/254 (10%)

Query: 107 WVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL---LSACAQLGALDYGNWVYS 163
           W   I   A  G   +A++LF  M++    P S++  SL   L +CA LG    G  +++
Sbjct: 16  WAQQIRAAAAEGHFCDAVSLFLRMRA-SAAPRSSVPASLPAALKSCAALGLSALGASLHA 74

Query: 164 --------------------YIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
                               Y +  C  LDS    A++D+     + +   +VF    ++
Sbjct: 75  LAIRSGAFADRFTANALLNLYCKVPCSYLDST-GVAIVDVPGSSTAFESVRKVFDEMIER 133

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           DV ++ + + G A  G   EA      M  +G  PDS +   VL   +    V++G    
Sbjct: 134 DVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGL-EV 192

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
           H     +G   ++   + ++D+       + +     ++P++ D+++W +LL  C  + +
Sbjct: 193 HGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVR-DHILWNSLLAGCAQNGS 251

Query: 324 AEMGQRIGNMLIES 337
            E    I   ++++
Sbjct: 252 VEEALGIFRRMLQA 265


>gi|358347383|ref|XP_003637737.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503672|gb|AES84875.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 561

 Score =  360 bits (925), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 181/518 (34%), Positives = 307/518 (59%), Gaps = 8/518 (1%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++++  YDV+V  SL+  Y     +  A+ V   + + +V +WNS+I+GY   G+  E 
Sbjct: 44  IMRSNLNYDVYVCTSLVDMYVKNDCLEKAQAVLHRAKNKNVCAWNSLISGYSFKGQFGEA 103

Query: 62  LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKR----SLVSWVVLISG 113
           +KL ++M +     + V+WN ++ G    G +D+A  + N++       ++VSW  LISG
Sbjct: 104 VKLLNQMVEEGITPDLVTWNGLVSGYSMQGRIDEALTIINRIKSSGITPNVVSWTALISG 163

Query: 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD 173
            +QN +  +AL +F +MQ+ +++PNS  + SLL ACA    L  G  ++ +  K     D
Sbjct: 164 CSQNEKYMDALKIFSQMQAENVKPNSTTICSLLCACAGPSLLKKGEELHCFSMKLGFVDD 223

Query: 174 SILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKS 233
             +  ALIDMY++ G + +A  VF+   +K +  +   + G A++ H  E   L++ M+ 
Sbjct: 224 IYVATALIDMYSEAGKLKVAYNVFNKIQEKTLPCWNCMMMGYAIHSHGEEVMILYDKMRE 283

Query: 234 KGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLE 293
           + I PD+I++ A+LSAC + G V++G+ YF SM + + I P ++HY CMVDLLG++G L+
Sbjct: 284 RHIRPDAITFTALLSACKNSGLVDEGWKYFDSMQEDYNIVPTIEHYCCMVDLLGKSGFLD 343

Query: 294 EAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYV 353
           EA +FI +MP+KPD  IWG LL +C++H+N ++ +     L + + N+   Y+L+ N+Y 
Sbjct: 344 EASHFIETMPIKPDASIWGALLASCKIHKNIKLAEIAARKLFKMEPNNSANYVLMMNLYS 403

Query: 354 ETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVK 413
              +    E ++ +M    +K  P  S  +++  +H F    R H +  EIY    +++ 
Sbjct: 404 SLNRWVAVERLKHSMTVLAMKIPPVWSWTQVNQSIHVFSTEGRPHPEEGEIYFELYQLIS 463

Query: 414 KIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSD 473
           +I+  GY  +   V  +I++ EKE ++  H+EKLA+ +G++  K GS IRIVKN RIC D
Sbjct: 464 EIRKLGYAPDLNCVCQNIDDNEKEKILMSHTEKLAMVYGVMKMKGGSPIRIVKNTRICFD 523

Query: 474 CHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           CH+  K +S V KR+I +RD   +HHF++G C+C + W
Sbjct: 524 CHTVAKYISLVRKREILLRDGGRFHHFKNGKCACNDRW 561



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 96/198 (48%), Gaps = 4/198 (2%)

Query: 124 LALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDM 183
           L  FR + SL  +P+S  + S L A  +LG    G  ++ YI +  +  D  +C +L+DM
Sbjct: 3   LTSFRSLHSLGFKPDSCSVTSALQAVIELGFFKLGKEIHGYIMRSNLNYDVYVCTSLVDM 62

Query: 184 YAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISY 243
           Y K   ++ A  V H   +K+V A+ S I G +  G   EA +L   M  +GI+PD +++
Sbjct: 63  YVKNDCLEKAQAVLHRAKNKNVCAWNSLISGYSFKGQFGEAVKLLNQMVEEGITPDLVTW 122

Query: 244 IAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP 303
             ++S  S  G +++     + +    GI P +  +  ++    +     +A    + M 
Sbjct: 123 NGLVSGYSMQGRIDEALTIINRI-KSSGITPNVVSWTALISGCSQNEKYMDALKIFSQMQ 181

Query: 304 ---MKPDNVIWGTLLGAC 318
              +KP++    +LL AC
Sbjct: 182 AENVKPNSTTICSLLCAC 199


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  360 bits (925), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 195/550 (35%), Positives = 313/550 (56%), Gaps = 43/550 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFD-ESDDLDVVSWNSMINGYVRNGEILE 60
           V+K  F     V  +L+  YS  G++ +A  +F   S   +VVSW +MING ++NG++  
Sbjct: 332 VLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPL 391

Query: 61  GLKLFDKMPQ----RNDVSWNSILGGLV-------------------------------R 85
              LF +M +     ND ++++IL   V                               +
Sbjct: 392 AAALFSRMREDGVAPNDFTYSTILTASVASLPPQIHAQVIKTNYECTSIVGTALLASYSK 451

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
             + ++A  +F  + ++ +VSW  +++ +AQ G    A  +F +M    L+PN   + S+
Sbjct: 452 LCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDSDGATNIFIKMTMHGLKPNEFTISSV 511

Query: 146 LSACAQLGA-LDYGNWVYSY-IQKKCIKLDSILC--AALIDMYAKCGSIDLAMQVFHSYG 201
           + ACA   A +D G   ++  I+ +C      LC  +AL+ MYA+ GSI+ A  +F    
Sbjct: 512 IDACASPTAGVDLGRQFHAISIKHRC---HDALCVSSALVSMYARKGSIESAQCIFERQT 568

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
           D+D+ ++ S + G A +G+S +A ++F  M+++GI  D +++++V+  C+H G VE+G  
Sbjct: 569 DRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAEGIEMDGVTFLSVIMGCAHAGLVEEGQR 628

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           YF SM   +GI P ++HYACMVDL  RAG L+EA + I  M      ++W TLLGAC+VH
Sbjct: 629 YFDSMARDYGITPTMEHYACMVDLYSRAGKLDEAMSLIEGMSFPAGPMVWRTLLGACKVH 688

Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
           +N E+G+     L+  +      Y+LLSNIY    K +  +EVRK M  +K+K+  GCS 
Sbjct: 689 KNVELGKLAAEKLLSLEPFDSATYVLLSNIYSAAGKWKEKDEVRKLMDTKKVKKEAGCSW 748

Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIG 441
           I++   VH F+A D+SH  +++IY     +  K+K  GY  +T   + ++ EE+KE ++ 
Sbjct: 749 IQIKNKVHSFIASDKSHPLSEQIYAKLRAMTTKLKQEGYCPDTSFALHEVAEEQKEAMLA 808

Query: 442 YHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
            HSE+LALAFGLI T PG+ + I KN+R+C DCH+ +K+VSK+  R+I +RD   +HHF 
Sbjct: 809 MHSERLALAFGLIATPPGAPLHIFKNLRVCGDCHTVIKMVSKIEDREIVMRDCSRFHHFN 868

Query: 502 DGSCSCLEYW 511
            G CSC ++W
Sbjct: 869 SGVCSCGDFW 878



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 124/252 (49%), Gaps = 8/252 (3%)

Query: 71  RNDVS-WNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE 129
           R DV    S++   +++ SV D  +VF  MPKR++V+W  L++G+ Q+G   + + LF  
Sbjct: 136 RGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFR 195

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
           M++  + PNS    S+LS  A  G +D G  V++   K        +C +L++MYAKCG 
Sbjct: 196 MRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGL 255

Query: 190 IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
           ++ A  VF     +D+ ++ + + GL +NGH +EA +LF + +S        +Y  V+  
Sbjct: 256 VEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKL 315

Query: 250 CS---HLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKP 306
           C+    LG   +     HS     G     +    ++D   +AG L  A +    M    
Sbjct: 316 CANIKQLGLARQ----LHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQ 371

Query: 307 DNVIWGTLLGAC 318
           + V W  ++  C
Sbjct: 372 NVVSWTAMINGC 383



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 95/360 (26%), Positives = 158/360 (43%), Gaps = 47/360 (13%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           VK      VFV NSL+  Y+ CG V +AR VF   +  D+VSWN+++ G V NG  LE L
Sbjct: 232 VKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEAL 291

Query: 63  KLF-----------------------------------DKMPQRNDVSWNSILGGLV--- 84
           +LF                                     + +R   S+ +++  L+   
Sbjct: 292 QLFHDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAY 351

Query: 85  -RFGSVDDACRVFNQMP-KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
            + G + +A  +F  M   +++VSW  +I+G  QNG    A ALF  M+   + PN    
Sbjct: 352 SKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTY 411

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
            ++L+A            +++ + K   +  SI+  AL+  Y+K  + + A+ +F     
Sbjct: 412 STILTA----SVASLPPQIHAQVIKTNYECTSIVGTALLASYSKLCNTEEALSIFKMIDQ 467

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC-SHLGWVEKGFY 261
           KDV ++++ +   A  G S  A  +F  M   G+ P+  +  +V+ AC S    V+ G  
Sbjct: 468 KDVVSWSAMLTCYAQAGDSDGATNIFIKMTMHGLKPNEFTISSVIDACASPTAGVDLG-R 526

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
            FH++   H     L   + +V +  R G +E A+  I       D V W ++L     H
Sbjct: 527 QFHAISIKHRCHDALCVSSALVSMYARKGSIESAQ-CIFERQTDRDLVSWNSMLSGYAQH 585



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 128/280 (45%), Gaps = 40/280 (14%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DV V  SL+  Y     V D R VF+     +VV+W S++ GY+++G + + ++LF +M 
Sbjct: 138 DVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMR 197

Query: 70  QR----NDVSWNSILG-----GLVRFGS------------------------------VD 90
                 N V++ S+L      G+V  G                               V+
Sbjct: 198 AEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVE 257

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           +A  VF  M  R +VSW  L++G   NG   EAL LF + +S       +   +++  CA
Sbjct: 258 EARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLCA 317

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVF-HSYGDKDVSAYT 209
            +  L     ++S + K+       +  AL+D Y+K G +  A+ +F    G ++V ++T
Sbjct: 318 NIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWT 377

Query: 210 SAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
           + I G   NG    A  LF  M+  G++P+  +Y  +L+A
Sbjct: 378 AMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTA 417


>gi|302793743|ref|XP_002978636.1| hypothetical protein SELMODRAFT_109283 [Selaginella moellendorffii]
 gi|300153445|gb|EFJ20083.1| hypothetical protein SELMODRAFT_109283 [Selaginella moellendorffii]
          Length = 438

 Score =  360 bits (925), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 173/438 (39%), Positives = 271/438 (61%)

Query: 74  VSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL 133
           +S  ++L    + G++  A R+F +  +  +  W  +I+ + Q+G  ++A+ LF E+ + 
Sbjct: 1   MSLVTVLSAFAKVGNLHLAARIFARTDRSYIFPWNAMIAAYVQHGDSRQAIRLFDELLAR 60

Query: 134 DLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLA 193
            +EPNS  L+ +L ACA L AL  G  V++  +   +  +  +  A++DMY+KCG +D A
Sbjct: 61  RIEPNSVTLMEVLDACASLAALRDGKRVHAIARDHGVDSEVAVATAIVDMYSKCGCLDEA 120

Query: 194 MQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL 253
           ++ F      D  ++T+ +   A +GH   A   F+ M+ +G  P+ ++++ +LSACSH 
Sbjct: 121 VEAFARIERHDTVSWTAMLAAFAQHGHIDRALATFQRMQEQGHKPNYVTFVHLLSACSHK 180

Query: 254 GWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGT 313
           G VE+G  YF  M   +GI P+  HYACMVDLLGRAG L+EAE+F+  MP  P   +  +
Sbjct: 181 GLVEEGRKYFDLMTARYGIAPDAQHYACMVDLLGRAGYLDEAEDFLNRMPGAPHAAVLKS 240

Query: 314 LLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKI 373
           LL ACR +++ + G+RI   ++ES  +    Y++L++IY    K E A  +R  M +R +
Sbjct: 241 LLSACRSYKDVDRGERIAKRMLESFWDESMPYVVLASIYRAAGKWEEAARIRSLMVERGV 300

Query: 374 KRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEE 433
           ++ PG S IE++G V EF+AGD SH +   I    +E+   +K  GY  +T  V+ D+ E
Sbjct: 301 RKDPGRSAIEVEGRVFEFVAGDMSHVQMNPIRAKLQELSSAMKEAGYVPDTSLVLHDVAE 360

Query: 434 EEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRD 493
           EEKE V+ +HSEKLA+AFGL+ T  GS IR++KN+R+C DCH A KL+S + +R+I  RD
Sbjct: 361 EEKEQVLLWHSEKLAVAFGLLNTPAGSPIRVIKNLRVCKDCHDAAKLISAIEQRRIVFRD 420

Query: 494 RKHYHHFEDGSCSCLEYW 511
              +HHFE+G CSC +YW
Sbjct: 421 LSRFHHFENGVCSCGDYW 438



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 95/218 (43%), Gaps = 40/218 (18%)

Query: 16  SLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQR---- 71
           +++  ++  G +  A  +F  +D   +  WN+MI  YV++G+  + ++LFD++  R    
Sbjct: 5   TVLSAFAKVGNLHLAARIFARTDRSYIFPWNAMIAAYVQHGDSRQAIRLFDELLARRIEP 64

Query: 72  NDVSWNSILGGLVRF-----------------------------------GSVDDACRVF 96
           N V+   +L                                         G +D+A   F
Sbjct: 65  NSVTLMEVLDACASLAALRDGKRVHAIARDHGVDSEVAVATAIVDMYSKCGCLDEAVEAF 124

Query: 97  NQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALD 156
            ++ +   VSW  +++ FAQ+G    ALA F+ MQ    +PN    V LLSAC+  G ++
Sbjct: 125 ARIERHDTVSWTAMLAAFAQHGHIDRALATFQRMQEQGHKPNYVTFVHLLSACSHKGLVE 184

Query: 157 YGNWVYSYIQKK-CIKLDSILCAALIDMYAKCGSIDLA 193
            G   +  +  +  I  D+   A ++D+  + G +D A
Sbjct: 185 EGRKYFDLMTARYGIAPDAQHYACMVDLLGRAGYLDEA 222



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 12/161 (7%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           +V V  +++  YS CG + +A   F   +  D VSW +M+  + ++G I   L  F +M 
Sbjct: 100 EVAVATAIVDMYSKCGCLDEAVEAFARIERHDTVSWTAMLAAFAQHGHIDRALATFQRMQ 159

Query: 70  QR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLISGFAQNGRP 120
           ++    N V++  +L      G V++  + F+ M  R  ++     +  ++    + G  
Sbjct: 160 EQGHKPNYVTFVHLLSACSHKGLVEEGRKYFDLMTARYGIAPDAQHYACMVDLLGRAGYL 219

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161
            EA      M      P++A+L SLLSAC     +D G  +
Sbjct: 220 DEAEDFLNRMPG---APHAAVLKSLLSACRSYKDVDRGERI 257


>gi|357136551|ref|XP_003569867.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Brachypodium distachyon]
          Length = 580

 Score =  360 bits (924), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 187/427 (43%), Positives = 281/427 (65%), Gaps = 2/427 (0%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           G +  A ++F+ +  +++V+W  +ISG+ QNG  ++ + +++EM+     P+S   V+ L
Sbjct: 154 GRLPVARKLFDAIRDKNVVAWNAMISGYEQNGLAEQGIEVYKEMKVAKAVPDSMTFVATL 213

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
           SACAQ GALD G  V   I  + + +   L +AL++MYA+CG +D A Q F    +++V 
Sbjct: 214 SACAQAGALDLGREVERRIVSERMDISVFLGSALVNMYARCGVVDKARQWFDVLQERNVV 273

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
            +TS I G  M+GH  EA +L+  M+ KG  P+ ++++AVLSAC+H G + +G   F  M
Sbjct: 274 TWTSMIAGYGMHGHGHEAIKLYHLMRCKGPPPNDVTFVAVLSACAHAGLITEGRDAFACM 333

Query: 267 FDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA-SMPMKPDNVIWGTLLGACRVHRNAE 325
             V+G+ P ++HY  MVD+ GRAG LEEA  FI  SMP  P   +W  +LGAC++H+N  
Sbjct: 334 KRVYGLAPRVEHYCSMVDMYGRAGRLEEAMQFIRDSMPGDPGPEVWTAILGACKMHKNFS 393

Query: 326 MGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELD 385
           +G  +   LI  +  +   ++LLSNIY  + K  + E+VR TM KR++K+  G SLIEL 
Sbjct: 394 LGVEVAERLIRLEPENPSYHVLLSNIYALSGKMYHVEKVRNTMIKRRLKKQIGYSLIELG 453

Query: 386 GVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSE 445
           G  H F  G++SH+KT+EIYQ+ EE+V +I   GY  ET SV+ ++EEEE+E  + YHSE
Sbjct: 454 GTSHLFRMGEKSHQKTREIYQYLEELVHRISAAGYMPETESVLHELEEEEREGALRYHSE 513

Query: 446 KLALAFGLICTKPGSV-IRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGS 504
           KLA+A+GL+ +   +  +R++KN+RICSDCH A+K +S V  R+I +RD+  +HHF+DG 
Sbjct: 514 KLAVAYGLMMSAGSTTPLRVIKNLRICSDCHLAIKFMSAVENREIIVRDKHRFHHFKDGK 573

Query: 505 CSCLEYW 511
           CSCLEYW
Sbjct: 574 CSCLEYW 580



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 135/289 (46%), Gaps = 54/289 (18%)

Query: 7   FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFD 66
           F  D FV  +L+  YS CGR+  AR +FD   D +VV+WN+MI+GY +NG   +G++++ 
Sbjct: 136 FGSDRFVLTALVVLYSKCGRLPVARKLFDAIRDKNVVAWNAMISGYEQNGLAEQGIEVYK 195

Query: 67  KM------------------------------------PQRNDVS---WNSILGGLVRFG 87
           +M                                     +R D+S    ++++    R G
Sbjct: 196 EMKVAKAVPDSMTFVATLSACAQAGALDLGREVERRIVSERMDISVFLGSALVNMYARCG 255

Query: 88  SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLS 147
            VD A + F+ + +R++V+W  +I+G+  +G   EA+ L+  M+     PN    V++LS
Sbjct: 256 VVDKARQWFDVLQERNVVTWTSMIAGYGMHGHGHEAIKLYHLMRCKGPPPNDVTFVAVLS 315

Query: 148 ACAQLGALDYGNWVYSYIQKKCIKLDSILCA------ALIDMYAKCGSIDLAMQVFHSY- 200
           ACA  G +  G   ++     C+K    L        +++DMY + G ++ AMQ      
Sbjct: 316 ACAHAGLITEGRDAFA-----CMKRVYGLAPRVEHYCSMVDMYGRAGRLEEAMQFIRDSM 370

Query: 201 -GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248
            GD     +T+ +    M+ +     E+ E +    + P++ SY  +LS
Sbjct: 371 PGDPGPEVWTAILGACKMHKNFSLGVEVAERLIR--LEPENPSYHVLLS 417



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 80/150 (53%)

Query: 110 LISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC 169
           L       G P  ALA +R + S  L  +S    ++  ACA L AL  G  V+++     
Sbjct: 76  LARAATHQGLPLAALAFYRCLLSAALPFSSFAFTAVAKACADLSALRTGMTVHAHSILLG 135

Query: 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFE 229
              D  +  AL+ +Y+KCG + +A ++F +  DK+V A+ + I G   NG + +  E+++
Sbjct: 136 FGSDRFVLTALVVLYSKCGRLPVARKLFDAIRDKNVVAWNAMISGYEQNGLAEQGIEVYK 195

Query: 230 NMKSKGISPDSISYIAVLSACSHLGWVEKG 259
            MK     PDS++++A LSAC+  G ++ G
Sbjct: 196 EMKVAKAVPDSMTFVATLSACAQAGALDLG 225



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 81/159 (50%), Gaps = 15/159 (9%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +V       VF+ ++L+  Y+ CG V  AR  FD   + +VV+W SMI GY  +G   E 
Sbjct: 232 IVSERMDISVFLGSALVNMYARCGVVDKARQWFDVLQERNVVTWTSMIAGYGMHGHGHEA 291

Query: 62  LKLFDKM----PQRNDVSWNSIL-----GGLVRFGSVDDAC--RVFNQMPKRSLVSWVVL 110
           +KL+  M    P  NDV++ ++L      GL+  G    AC  RV+   P+  +  +  +
Sbjct: 292 IKLYHLMRCKGPPPNDVTFVAVLSACAHAGLITEGRDAFACMKRVYGLAPR--VEHYCSM 349

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
           +  + + GR +EA+   R+  S+  +P   +  ++L AC
Sbjct: 350 VDMYGRAGRLEEAMQFIRD--SMPGDPGPEVWTAILGAC 386


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  360 bits (924), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 195/548 (35%), Positives = 303/548 (55%), Gaps = 38/548 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K     D+F  N L+  Y     + DA  +FDE  + + +S+ ++I GY  +   LE 
Sbjct: 64  ILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEA 123

Query: 62  LKLFDKMPQR---NDVSWNSILG---------------------GL-------------- 83
           ++LF ++ +    N  ++ S+L                      GL              
Sbjct: 124 IELFVRLHREVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVY 183

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
            + G ++++  +F + P R+ V+W  +I G  Q G  ++AL LF  M    ++       
Sbjct: 184 AKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYS 243

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           S L ACA L AL+ G  ++S   K     D ++  ALIDMYAKCGSI  A  VF     +
Sbjct: 244 SALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQ 303

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           D  ++ + I G +M+G   EA  +F+ M+   + PD ++++ VLSAC++ G +++G  YF
Sbjct: 304 DEVSWNAMISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYF 363

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
            SM   HGI+P ++HY CMV LLGR G L++A   I  +P +P  ++W  LLGAC +H +
Sbjct: 364 TSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHND 423

Query: 324 AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE 383
            E+G+     ++E +      ++LLSN+Y    + +N   VRK M+++ +K+ PG S IE
Sbjct: 424 IELGRISAQRVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIE 483

Query: 384 LDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYH 443
             G VH F  GD SH + + I    E +  K K  GY      V+ D+E+EEKE ++  H
Sbjct: 484 SQGTVHSFTVGDTSHPEVRVINGMLEWLHMKTKKAGYIPNYNVVLLDVEDEEKERLLWVH 543

Query: 444 SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
           SE+LAL+FG+I T  GS IRI+KN+RIC DCH+A+K +SKV +R+I +RD   +HHF++G
Sbjct: 544 SERLALSFGIIRTPSGSPIRIMKNLRICVDCHAAIKCISKVVQREIVVRDINRFHHFQEG 603

Query: 504 SCSCLEYW 511
            CSC +YW
Sbjct: 604 LCSCGDYW 611



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 83/167 (49%), Gaps = 12/167 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + VK +F  D+ V N+LI  Y+ CG ++DAR VFD  +  D VSWN+MI+GY  +G   E
Sbjct: 264 LTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLGRE 323

Query: 61  GLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLI 111
            L++FDKM +     + +++  +L      G +D     F  M +   +      +  ++
Sbjct: 324 ALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMV 383

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
               + G   +A+ L  E   +  +P+  +  +LL AC     ++ G
Sbjct: 384 WLLGRGGHLDKAVKLIDE---IPFQPSVMVWRALLGACVIHNDIELG 427



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 82/180 (45%), Gaps = 3/180 (1%)

Query: 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ 195
           E NS    + L  C Q      G  ++  I K+   LD      L++MY K   +  A +
Sbjct: 35  EFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASK 94

Query: 196 VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGW 255
           +F    +++  ++ + I G A +   +EA ELF  +  + + P+  ++ +VL AC+ +  
Sbjct: 95  LFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLH-REVLPNQFTFASVLQACATMEG 153

Query: 256 VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
           +  G      +  + G+  ++     ++D+  + G +E +    A  P + D V W T++
Sbjct: 154 LNLGNQIHCHVIKI-GLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRND-VTWNTVI 211


>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Brachypodium distachyon]
          Length = 552

 Score =  360 bits (924), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 170/391 (43%), Positives = 255/391 (65%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N++I+ Y    E+    +LF+ M  RN VSW S++ G +R G VD A  +F+ MP+R  V
Sbjct: 162 NALIDMYAECSEMDAAWELFEGMEVRNTVSWTSVISGFLRLGQVDQARTLFDCMPERDTV 221

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           SW  +I G+ Q G+ +EAL +FREMQ   +  +   +VS+++ACAQLGAL+ G W   Y+
Sbjct: 222 SWTAMIDGYVQAGQFREALEMFREMQFSKVRADEFTMVSVVTACAQLGALETGEWARIYM 281

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
            +  IK+D+ +  AL+DMY+KCGSI  A+ VF     +D   +T+ I GLA+NGH  EA 
Sbjct: 282 SRHGIKMDTFVGNALVDMYSKCGSIQQALGVFKEMYIRDKFTWTAVILGLAVNGHGEEAI 341

Query: 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL 285
            +F  M     +PD +++I VL+AC+H G V+KG  +F SM   +GI P + H+ C++DL
Sbjct: 342 NMFYRMLRVFEAPDEVTFIGVLTACTHAGLVDKGRDFFLSMTGSYGIAPNVMHFGCLIDL 401

Query: 286 LGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRY 345
           LGRAG L+EA   I +MPM+P++ IWGTLL ACRVH N+E+GQ     L+E D  +   Y
Sbjct: 402 LGRAGKLKEALETIGNMPMRPNSAIWGTLLAACRVHGNSEIGQLAAEHLLELDTENGMVY 461

Query: 346 ILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIY 405
           ILLSN+Y ++ + E+   +R+ + ++ IK+ PGCSLIE++G +HEF+AGDRSH  ++EIY
Sbjct: 462 ILLSNLYAKSNRWEDVRRLRQVIMEKGIKKEPGCSLIEMNGTIHEFIAGDRSHPMSKEIY 521

Query: 406 QFWEEIVKKIKNYGYNVETRSVMFDIEEEEK 436
              ++++  +K+ GY  +   +   +  EEK
Sbjct: 522 SKLDKVLTDLKDAGYVPDLTEIFVQVTREEK 552



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 113/265 (42%), Gaps = 36/265 (13%)

Query: 95  VFNQMPKR---SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           + +  P R   + V W  LISG  ++ + + +   F +M    + P     +++LSAC +
Sbjct: 76  LLDAWPARGGDTPVVWNALISGHRRSRQFRLSCCSFVDMVRTGVVPTPVTYITVLSACGK 135

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC------------------------ 187
              +  G  V+  +    +  D  +  ALIDMYA+C                        
Sbjct: 136 DKYIWLGMQVHKCVVASGVLPDLKVGNALIDMYAECSEMDAAWELFEGMEVRNTVSWTSV 195

Query: 188 -------GSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
                  G +D A  +F    ++D  ++T+ I G    G   EA E+F  M+   +  D 
Sbjct: 196 ISGFLRLGQVDQARTLFDCMPERDTVSWTAMIDGYVQAGQFREALEMFREMQFSKVRADE 255

Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
            + ++V++AC+ LG +E G +    M   HGIK +      +VD+  + G +++A     
Sbjct: 256 FTMVSVVTACAQLGALETGEWARIYM-SRHGIKMDTFVGNALVDMYSKCGSIQQALGVFK 314

Query: 301 SMPMKPDNVIWGTLLGACRVHRNAE 325
            M ++ D   W  ++    V+ + E
Sbjct: 315 EMYIR-DKFTWTAVILGLAVNGHGE 338



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 93/195 (47%), Gaps = 19/195 (9%)

Query: 4   KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
           ++    D FV N+L+  YS CG ++ A  VF E    D  +W ++I G   NG   E + 
Sbjct: 283 RHGIKMDTFVGNALVDMYSKCGSIQQALGVFKEMYIRDKFTWTAVILGLAVNGHGEEAIN 342

Query: 64  LFDKMPQ----RNDVSWNSILGGLVRFGSVDDACRVFNQMP-----KRSLVSWVVLISGF 114
           +F +M +     ++V++  +L      G VD     F  M        +++ +  LI   
Sbjct: 343 MFYRMLRVFEAPDEVTFIGVLTACTHAGLVDKGRDFFLSMTGSYGIAPNVMHFGCLIDLL 402

Query: 115 AQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDS 174
            + G+ KEAL     + ++ + PNSAI  +LL+AC   G  + G     ++    ++LD+
Sbjct: 403 GRAGKLKEAL---ETIGNMPMRPNSAIWGTLLAACRVHGNSEIGQLAAEHL----LELDT 455

Query: 175 ---ILCAALIDMYAK 186
              ++   L ++YAK
Sbjct: 456 ENGMVYILLSNLYAK 470


>gi|357485423|ref|XP_003612999.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355514334|gb|AES95957.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 676

 Score =  360 bits (924), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 201/543 (37%), Positives = 302/543 (55%), Gaps = 43/543 (7%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D FV   ++  Y+  G+++DAR+VFD   D DVV + ++I GY + G   E L++F+ M 
Sbjct: 136 DGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQRGLDGEALEVFEDMV 195

Query: 70  ----QRNDVSWNSIL----------------GGLVRFG-------------------SVD 90
               + N+ +  S+L                G +V+ G                    V+
Sbjct: 196 GSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKSGLESVVASQTSLLTMYSKCNMVE 255

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           D+ +VFN +   S V+W   I G  QNGR + AL++FREM    + PN     S+L AC+
Sbjct: 256 DSIKVFNSLAYASHVTWTSFIVGLVQNGREEIALSMFREMIRCSISPNHFTFSSILHACS 315

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
            L  L+ G  +++   K  +  +  + AALI +Y KCG+++ A  VF S  + DV +  +
Sbjct: 316 SLAMLEAGEQIHAVTVKLGVDGNKYVDAALIHLYGKCGNVEKARSVFESLTELDVVSINT 375

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I+  A NG   EA ELFE MK  G  P+ +++I++L AC++ G VE+G   F  + + H
Sbjct: 376 MIYAYAQNGFGHEALELFERMKKLGHKPNVVTFISILLACNNAGLVEEGCQIFSLIRNNH 435

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
            I+   DHY CM+DLLGRA   EEA   I      PD + W TLL AC++H   EM ++ 
Sbjct: 436 SIELTRDHYTCMIDLLGRAKRFEEAAMLIEE-GKNPDVIQWRTLLNACKIHGEVEMAEKF 494

Query: 331 GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHE 390
              +++      G +ILL+NIY    K +N  E++   R  ++K+ P  S +++D  VH 
Sbjct: 495 MKKMLDQAPRDGGTHILLTNIYASAGKWDNVIEMKSAGRDLRLKKTPAMSWVDIDREVHT 554

Query: 391 FLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALA 450
           F+AGD SH +  EI +   E+++K+   GYN +T+ V+ D+EEE+K + + YHSEKLA+A
Sbjct: 555 FMAGDLSHPRAHEISEMLHELIEKVITLGYNPDTKFVLQDLEEEKKISALYYHSEKLAIA 614

Query: 451 FGL--ICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCL 508
           F L   C K  + IRI KN+R+C DCHS +K VS +  R I  RD K +HHF+ G CSC 
Sbjct: 615 FALWKTCGK-NTAIRIFKNLRVCGDCHSWIKFVSLLTGRDIIARDAKRFHHFKGGICSCK 673

Query: 509 EYW 511
           +YW
Sbjct: 674 DYW 676



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 158/334 (47%), Gaps = 45/334 (13%)

Query: 12  FVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQR 71
           F  + LI  Y  C  + +AR +FDE  +  +V+WNSMI+ +V  G+  E ++L+D M   
Sbjct: 36  FFGHKLIDGYIKCSVITEARKLFDEMPNRHIVTWNSMISSHVSRGKTKEAIELYDNMLFE 95

Query: 72  N------------------------------------DVSWNSILGGLV----RFGSVDD 91
                                                +VS   +  G+V    +FG + D
Sbjct: 96  GVLPDAYTFSAIFKAFSEMGVSREGQKAHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKD 155

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           A  VF+++  + +V +  LI G+ Q G   EAL +F +M    ++PN   L S+L +C  
Sbjct: 156 ARFVFDRVLDKDVVLFTALIVGYNQRGLDGEALEVFEDMVGSRIKPNEYTLASVLVSCGN 215

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCA--ALIDMYAKCGSIDLAMQVFHSYGDKDVSAYT 209
           LG L  G  ++  + K    L+S++ +  +L+ MY+KC  ++ +++VF+S        +T
Sbjct: 216 LGDLVNGKLIHGLVVKS--GLESVVASQTSLLTMYSKCNMVEDSIKVFNSLAYASHVTWT 273

Query: 210 SAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDV 269
           S I GL  NG    A  +F  M    ISP+  ++ ++L ACS L  +E G    H++   
Sbjct: 274 SFIVGLVQNGREEIALSMFREMIRCSISPNHFTFSSILHACSSLAMLEAG-EQIHAVTVK 332

Query: 270 HGIKPELDHYACMVDLLGRAGLLEEAENFIASMP 303
            G+       A ++ L G+ G +E+A +   S+ 
Sbjct: 333 LGVDGNKYVDAALIHLYGKCGNVEKARSVFESLT 366



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 120/308 (38%), Gaps = 75/308 (24%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +VVK+     V  + SL+  YS C  V D+  VF+       V+W S I G V+NG    
Sbjct: 228 LVVKSGLESVVASQTSLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEI 287

Query: 61  GLKLFDKMPQ----RNDVSWNSIL-------------------------------GGLVR 85
            L +F +M +     N  +++SIL                                 L+ 
Sbjct: 288 ALSMFREMIRCSISPNHFTFSSILHACSSLAMLEAGEQIHAVTVKLGVDGNKYVDAALIH 347

Query: 86  F----GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
                G+V+ A  VF  + +  +VS   +I  +AQNG   EAL LF  M+ L  +PN   
Sbjct: 348 LYGKCGNVEKARSVFESLTELDVVSINTMIYAYAQNGFGHEALELFERMKKLGHKPNVVT 407

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKK-CIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
            +S+L AC   G ++ G  ++S I+    I+L       +ID+  +    +         
Sbjct: 408 FISILLACNNAGLVEEGCQIFSLIRNNHSIELTRDHYTCMIDLLGRAKRFE--------- 458

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
                                 EA  L E    +G +PD I +  +L+AC   G VE   
Sbjct: 459 ----------------------EAAMLIE----EGKNPDVIQWRTLLNACKIHGEVEMAE 492

Query: 261 YYFHSMFD 268
            +   M D
Sbjct: 493 KFMKKMLD 500



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 3/137 (2%)

Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
           LID Y KC  I  A ++F    ++ +  + S I      G + EA EL++NM  +G+ PD
Sbjct: 41  LIDGYIKCSVITEARKLFDEMPNRHIVTWNSMISSHVSRGKTKEAIELYDNMLFEGVLPD 100

Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYAC-MVDLLGRAGLLEEAENF 298
           + ++ A+  A S +G   +G    H +  V G +      A  +VD+  + G +++A  F
Sbjct: 101 AYTFSAIFKAFSEMGVSREG-QKAHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDAR-F 158

Query: 299 IASMPMKPDNVIWGTLL 315
           +    +  D V++  L+
Sbjct: 159 VFDRVLDKDVVLFTALI 175


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  360 bits (924), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 195/540 (36%), Positives = 306/540 (56%), Gaps = 40/540 (7%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM-- 68
           VF+   L+  Y  CG + DAR V D   +  VVSW +MI+GY +    +E L LF KM  
Sbjct: 77  VFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLR 136

Query: 69  -------------------PQR------------------NDVSWNSILGGLVRFGSVDD 91
                              PQ                   +    +S+L    +  ++ +
Sbjct: 137 AGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQE 196

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           A RVF+ +P+R +VS   +ISG+AQ G  +EAL LFR++ S  ++ N     +L++A + 
Sbjct: 197 ARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSG 256

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSA 211
           L +LDYG  V++ I +K +     L  +LIDMY+KCG +  + +VF +  ++ V ++ + 
Sbjct: 257 LASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAM 316

Query: 212 IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG 271
           + G   +G   E   LF+++  K + PDS++ +AVLS CSH G V++G   F ++     
Sbjct: 317 LMGYGRHGLGHEVISLFKDLH-KEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQS 375

Query: 272 IKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIG 331
                 HY C++DLLGR+G LE+A N I +MP +    IWG+LLGACRVH N  +G+ + 
Sbjct: 376 ALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVGELVA 435

Query: 332 NMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEF 391
             L+E +  + G Y++LSNIY      ++  +VRK M ++ + + PG S I LD V+H F
Sbjct: 436 QKLLEMEPENAGNYVILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKVIHTF 495

Query: 392 LAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAF 451
            + +R H   ++I    +EI   IK  G+  +   V+ D+++E+KE ++  HSEKLA+ F
Sbjct: 496 HSSERFHPSKKDINAKIKEIFVDIKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITF 555

Query: 452 GLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           GL+ T PG  IR++KN+RIC DCH+  K VSKV++R+IS+RD+  +H    G+C+C +YW
Sbjct: 556 GLMNTPPGLTIRVMKNLRICVDCHNFAKFVSKVYEREISLRDKNRFHLLTHGNCTCGDYW 615



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 126/254 (49%), Gaps = 41/254 (16%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++VK +F   +FV +SL+  Y+    +++AR VFD   + DVVS  ++I+GY + G   E
Sbjct: 168 LLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEE 227

Query: 61  GLKLFDKM----PQRNDVSWNSILGGLVRFGSVD-------------------------- 90
            L LF ++     Q N V++ +++  L    S+D                          
Sbjct: 228 ALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLID 287

Query: 91  --DAC-------RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
               C       RVF+ M +RS+VSW  ++ G+ ++G   E ++LF+++   +++P+S  
Sbjct: 288 MYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHK-EVKPDSVT 346

Query: 142 LVSLLSACAQLGALDYGNWVY-SYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
           L+++LS C+  G +D G  ++ + ++++   L +     +ID+  + G ++ A+ +  + 
Sbjct: 347 LLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENM 406

Query: 201 GDKDVSAYTSAIFG 214
             +   +   ++ G
Sbjct: 407 PFESTPSIWGSLLG 420



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 83/157 (52%), Gaps = 11/157 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNG---E 57
           ++++    + V ++NSLI  YS CG++  +R VFD   +  VVSWN+M+ GY R+G   E
Sbjct: 269 LILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHE 328

Query: 58  ILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV-----SWVVLIS 112
           ++   K   K  + + V+  ++L G    G VD+   +F+ + K          +  +I 
Sbjct: 329 VISLFKDLHKEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIID 388

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
              ++GR ++AL L   ++++  E   +I  SLL AC
Sbjct: 389 LLGRSGRLEKALNL---IENMPFESTPSIWGSLLGAC 422



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 75/158 (47%), Gaps = 1/158 (0%)

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
           ++AC +  AL  G  V++ +     +    L   L+ MY +CG++D A  V     ++ V
Sbjct: 49  ITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSV 108

Query: 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHS 265
            ++T+ I G +     +EA +LF  M   G  P+  +   VL++CS    + +G    HS
Sbjct: 109 VSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQG-KQVHS 167

Query: 266 MFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP 303
           +      +  +   + ++D+  ++  ++EA     ++P
Sbjct: 168 LLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLP 205


>gi|356528130|ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Glycine max]
          Length = 674

 Score =  360 bits (924), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 193/536 (36%), Positives = 306/536 (57%), Gaps = 39/536 (7%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ---- 70
           N +I+ Y   G +  A+ +FDE  D +V +WN+M+ G  +     E L LF +M +    
Sbjct: 139 NIMIKAYLGMGNLESAKNLFDEMPDRNVATWNAMVTGLTKFEMNEEALLLFSRMNELSFM 198

Query: 71  RNDVSWNSILGGL-----------------------------------VRFGSVDDACRV 95
            ++ S  S+L G                                    ++ GS+ D  RV
Sbjct: 199 PDEYSLGSVLRGCAHLGALLAGQQVHAYVMKCGFECNLVVGCSLAHMYMKAGSMHDGERV 258

Query: 96  FNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGAL 155
            N MP  SLV+W  L+SG AQ G  +  L  +  M+     P+    VS++S+C++L  L
Sbjct: 259 INWMPDCSLVAWNTLMSGKAQKGYFEGVLDQYCMMKMAGFRPDKITFVSVISSCSELAIL 318

Query: 156 DYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGL 215
             G  +++   K     +  + ++L+ MY++CG +  +++ F    ++DV  ++S I   
Sbjct: 319 CQGKQIHAEAVKAGASSEVSVVSSLVSMYSRCGCLQDSIKTFLECKERDVVLWSSMIAAY 378

Query: 216 AMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE 275
             +G   EA +LF  M+ + +  + I+++++L ACSH G  +KG   F  M   +G+K  
Sbjct: 379 GFHGQGEEAIKLFNEMEQENLPGNEITFLSLLYACSHCGLKDKGLGLFDMMVKKYGLKAR 438

Query: 276 LDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLI 335
           L HY C+VDLLGR+G LEEAE  I SMP+K D +IW TLL AC++H+NAE+ +R+ + ++
Sbjct: 439 LQHYTCLVDLLGRSGCLEEAEAMIRSMPVKADAIIWKTLLSACKIHKNAEIARRVADEVL 498

Query: 336 ESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGD 395
             D      Y+LL+NIY    + +N  EVR+ M+ + +K+ PG S +E+   VH+F  GD
Sbjct: 499 RIDPQDSASYVLLANIYSSANRWQNVSEVRRAMKDKMVKKEPGISWVEVKNQVHQFHMGD 558

Query: 396 RSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLIC 455
             H K  EI Q+ EE+  +IK  GY  +T SV+ D++ EEKE ++ +HSEKLA+AF L+ 
Sbjct: 559 ECHPKHVEINQYLEELTSEIKRQGYVPDTSSVLHDMDNEEKEQILRHHSEKLAIAFALMN 618

Query: 456 TKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           T  G  IR++KN+R+CSDCH A+K +S++ K +I +RD   +HHF++G+CSC +YW
Sbjct: 619 TPEGVPIRVMKNLRVCSDCHVAIKYISEIKKLEIIVRDSSRFHHFKNGTCSCGDYW 674



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 161/310 (51%), Gaps = 7/310 (2%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N ++N Y + GE+   + LFD+MP+RN +S N ++   +  G+++ A  +F++MP R++ 
Sbjct: 108 NHLLNLYSKFGELQAAVALFDRMPRRNIMSCNIMIKAYLGMGNLESAKNLFDEMPDRNVA 167

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           +W  +++G  +    +EAL LF  M  L   P+   L S+L  CA LGAL  G  V++Y+
Sbjct: 168 TWNAMVTGLTKFEMNEEALLLFSRMNELSFMPDEYSLGSVLRGCAHLGALLAGQQVHAYV 227

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
            K   + + ++  +L  MY K GS+    +V +   D  + A+ + + G A  G+     
Sbjct: 228 MKCGFECNLVVGCSLAHMYMKAGSMHDGERVINWMPDCSLVAWNTLMSGKAQKGYFEGVL 287

Query: 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL 285
           + +  MK  G  PD I++++V+S+CS L  + +G    H+     G   E+   + +V +
Sbjct: 288 DQYCMMKMAGFRPDKITFVSVISSCSELAILCQG-KQIHAEAVKAGASSEVSVVSSLVSM 346

Query: 286 LGRAGLLEEA-ENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGR 344
             R G L+++ + F+     + D V+W +++ A   H   E   ++ N +    +N  G 
Sbjct: 347 YSRCGCLQDSIKTFLEC--KERDVVLWSSMIAAYGFHGQGEEAIKLFNEM--EQENLPGN 402

Query: 345 YI-LLSNIYV 353
            I  LS +Y 
Sbjct: 403 EITFLSLLYA 412


>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 970

 Score =  360 bits (924), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 194/549 (35%), Positives = 308/549 (56%), Gaps = 40/549 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEI---- 58
           +K  F Y+  V N+ +  Y+ CG +  A+ VF       V SWN++I G+ ++ +     
Sbjct: 422 LKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSL 481

Query: 59  ---------------------------LEGLKLFDKMP--------QRNDVSWNSILGGL 83
                                      L+ L+L  ++         +R+   + S+L   
Sbjct: 482 DAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLY 541

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
           +  G +     +F+ M  +SLVSW  +I+G+ QNG P  AL +FR+M    ++     ++
Sbjct: 542 IHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMM 601

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
            +  AC+ L +L  G   ++Y  K  ++ D+ +  +LIDMYAK GSI  + +VF+   +K
Sbjct: 602 PVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEK 661

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
             +++ + I G  ++G + EA +LFE M+  G +PD ++++ VL+AC+H G + +G  Y 
Sbjct: 662 STASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYL 721

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS-MPMKPDNVIWGTLLGACRVHR 322
             M    G+KP L HYAC++D+LGRAG L++A   +A  M  + D  IW +LL +CR+H+
Sbjct: 722 DQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQ 781

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           N EMG+++   L E +      Y+LLSN+Y    K E+  +VR+ M +  +++  GCS I
Sbjct: 782 NLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWI 841

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           EL+  V  F+ G+R  +  +EI   W  +  KI   GY  +T SV  D+ EEEK   +  
Sbjct: 842 ELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRG 901

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSEKLAL +GLI T  G+ IR+ KN+RIC DCH+A KL+SKV +R+I +RD K +HHF++
Sbjct: 902 HSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKN 961

Query: 503 GSCSCLEYW 511
           G CSC +YW
Sbjct: 962 GVCSCGDYW 970



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 131/282 (46%), Gaps = 46/282 (16%)

Query: 17  LIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRN---GEILEG----LKLFDKMP 69
           +I  Y++CG   D+R+VFD     ++  WN++I+ Y RN    E+LE     +   D +P
Sbjct: 126 IITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLP 185

Query: 70  QR-------------NDVSWNSILGGLV--------------------RFGSVDDACRVF 96
                          +DV     + GLV                      G V DA ++F
Sbjct: 186 DHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLF 245

Query: 97  NQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD----LEPNSAILVSLLSACAQL 152
           + MP+R+LVSW  +I  F+ NG  +E+  L  EM   +      P+ A LV++L  CA+ 
Sbjct: 246 DIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCARE 305

Query: 153 GALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAI 212
             +  G  V+ +  K  +  + +L  AL+DMY+KCG I  A  +F    +K+V ++ + +
Sbjct: 306 REIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMV 365

Query: 213 FGLAMNGHSIEAFELFENMKSKG--ISPDSISYIAVLSACSH 252
            G +  G +   F++   M + G  +  D ++ +  +  C H
Sbjct: 366 GGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFH 407



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 142/330 (43%), Gaps = 60/330 (18%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +VVK     DVFV N+L+ FY   G V DA  +FD   + ++VSWNSMI  +  NG   E
Sbjct: 212 LVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEE 271

Query: 61  GLKLFDKMPQRN-------DVS-----------------------W-------------N 77
              L  +M + N       DV+                       W             N
Sbjct: 272 SFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNN 331

Query: 78  SILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQS--LDL 135
           +++    + G + +A  +F     +++VSW  ++ GF+  G       + R+M +   D+
Sbjct: 332 ALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDV 391

Query: 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ 195
           + +   +++ +  C     L     ++ Y  K+    + ++  A +  YAKCGS+  A +
Sbjct: 392 KADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQR 451

Query: 196 VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL-- 253
           VFH    K V+++ + I G A +     + +    MK  G+ PDS +  ++LSACS L  
Sbjct: 452 VFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKS 511

Query: 254 -------------GWVEKGFYYFHSMFDVH 270
                         W+E+  + + S+  ++
Sbjct: 512 LRLGKEVHGFIIRNWLERDLFVYLSVLSLY 541



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 103/236 (43%), Gaps = 42/236 (17%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++N    D+FV  S++  Y  CG +   + +FD  +D  +VSWN++I GY++NG     
Sbjct: 522 IIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRA 581

Query: 62  LKLFDKMP----QRNDVSWNSILGG----------------------------------- 82
           L +F +M     Q   +S   + G                                    
Sbjct: 582 LGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDM 641

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + GS+  + +VFN + ++S  SW  +I G+  +G  KEA+ LF EMQ     P+    
Sbjct: 642 YAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTF 701

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSIL--CAALIDMYAKCGSIDLAMQV 196
           + +L+AC   G +  G   Y    K    L   L   A +IDM  + G +D A++V
Sbjct: 702 LGVLTACNHSGLIHEG-LRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRV 756



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 114/259 (44%), Gaps = 19/259 (7%)

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE 129
           + +DV    I+      GS DD+  VF+ +  ++L  W  +IS +++N    E L  F E
Sbjct: 117 RNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIE 176

Query: 130 M-QSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCG 188
           M  + DL P+      ++ ACA +  +  G  V+  + K  +  D  +  AL+  Y   G
Sbjct: 177 MISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHG 236

Query: 189 SIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF----ELFENMKSKGISPDSISYI 244
            +  A+Q+F    ++++ ++ S I   + NG S E+F    E+ E        PD  + +
Sbjct: 237 FVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLV 296

Query: 245 AVLSACSHLGWVEKGFYYFHSMFDVHG------IKPELDHYACMVDLLGRAGLLEEAENF 298
            VL  C+    +  G         VHG      +  EL     ++D+  + G +  A+  
Sbjct: 297 TVLPVCAREREIGLG-------KGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQ-M 348

Query: 299 IASMPMKPDNVIWGTLLGA 317
           I  M    + V W T++G 
Sbjct: 349 IFKMNNNKNVVSWNTMVGG 367



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 107/248 (43%), Gaps = 20/248 (8%)

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVS------LLSACAQLGALDYGNWVYSY 164
           IS F + G   ++    +E    D   + A L+       LL A  +   ++ G  ++  
Sbjct: 50  ISNFCETGDLDKSFRTVQEFVGDDESSSDAFLLVREALGLLLQASGKRKDIEMGRKIHQL 109

Query: 165 IQKKC-IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIE 223
           +     ++ D +LC  +I MYA CGS D +  VF +   K++  + + I   + N    E
Sbjct: 110 VSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDE 169

Query: 224 AFELF-ENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACM 282
             E F E + +  + PD  +Y  V+ AC+ +  V  G    H +    G+  ++     +
Sbjct: 170 VLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGL-AVHGLVVKTGLVEDVFVGNAL 228

Query: 283 VDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQR----IGNMLIESD 338
           V   G  G + +A      MP + + V W +++   RV  +    +     +G M+   +
Sbjct: 229 VSFYGTHGFVTDALQLFDIMPER-NLVSWNSMI---RVFSDNGFSEESFLLLGEMM---E 281

Query: 339 QNHDGRYI 346
           +N DG ++
Sbjct: 282 ENGDGAFM 289


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  360 bits (924), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 198/548 (36%), Positives = 310/548 (56%), Gaps = 39/548 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFD-ESDDLDVVSWNSMINGYVRNGEILE 60
           V+K+ F  D  V  +++  YS CG + DA  +F       +VVSW +MI G ++N +I  
Sbjct: 328 VLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPL 387

Query: 61  GLKLFDKMPQ----RNDVSWNSILGGLV-------------------------------R 85
              LF +M +     N+ +++++L   +                               +
Sbjct: 388 AAALFSRMREDNVKPNEFTYSTVLTASIPILLPQIHAQIIKTNYQHAPSVGTALLASYSK 447

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
            G+ ++A  +F  +  + +V+W  ++S ++Q G    A  +F +M    ++PN   + S 
Sbjct: 448 LGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDCDGATNVFIKMSMQGMKPNEFTISSA 507

Query: 146 LSACAQLGA-LDYGNWVYSYIQKKCIKLDSI-LCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           + ACA   A +D G   ++ I  K    D+I + +AL+ MYA+ GSID A  VF    D+
Sbjct: 508 IDACASPTAGIDQGRQFHA-ISIKYRYQDAICVGSALVTMYARKGSIDSARIVFERQTDR 566

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           D+ ++ S I G A +G+S EA + F  M++ GI  D  +++AV+  C+H G V++G  YF
Sbjct: 567 DLVSWNSMISGYAQHGYSKEALDTFRQMETVGIEMDGATFLAVIVGCTHAGLVKEGQQYF 626

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
            SM   H I P ++HY+CMVDL  RAG L+E  N I  MP     ++W TLLGACRVH+N
Sbjct: 627 DSMVMDHNISPTMEHYSCMVDLYSRAGKLDETMNLIEGMPFPAGAMVWRTLLGACRVHKN 686

Query: 324 AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE 383
            E+G+     L+  + +    Y+LLSNIY    + +  +EVRK M  +K+K+  GCS I+
Sbjct: 687 VELGKLAAQKLLLLEPDDSATYVLLSNIYAAAGRWKERDEVRKLMDSKKVKKEAGCSWIQ 746

Query: 384 LDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYH 443
           +   VH F+A D+SH  +++IY   + +  ++K  GY   T  V+ DI EE+KET++  H
Sbjct: 747 IKNKVHSFIACDKSHPLSEQIYAKLKAMTTRLKQEGYCPNTSVVLHDIAEEQKETMLVMH 806

Query: 444 SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
           SE+LALAFGLI T P + ++IVKN+R+C DCH  MK+VS +  R+I +RD   +HHF  G
Sbjct: 807 SERLALAFGLIATPPRTPLQIVKNLRVCGDCHMVMKMVSLIEDREIIMRDCSRFHHFNAG 866

Query: 504 SCSCLEYW 511
           +CSC ++W
Sbjct: 867 ACSCGDFW 874



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 122/235 (51%), Gaps = 1/235 (0%)

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
           ++ G V+D   VF  MPKR++V+W  L++G+ Q     + +ALF  M++  + PN     
Sbjct: 146 MKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFT 205

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           S+LSA A  GA+D G  V++   K   +    +C +LI+MY+KCG ++ A  VF     +
Sbjct: 206 SVLSAVASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETR 265

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
           D+ ++ + + GL +N H +EA +LF + ++        +Y  V+  C++L  +       
Sbjct: 266 DMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALA-RQL 324

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
           HS    HG   + +    ++D   + G L++A N    MP   + V W  ++G C
Sbjct: 325 HSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGC 379



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 124/280 (44%), Gaps = 40/280 (14%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           +V V  +L+  Y  CG V D R VF+     +VV+W S++ GYV+     + + LF +M 
Sbjct: 134 EVGVGTALVDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMR 193

Query: 70  QR----NDVSWNSILGGLVRFGSVD----------------------------------- 90
                 N  ++ S+L  +   G+VD                                   
Sbjct: 194 AEGVWPNPFTFTSVLSAVASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVE 253

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           +A  VF QM  R +VSW  L++G   N    EAL LF + ++   + + +   +++  CA
Sbjct: 254 EAKAVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCA 313

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY-GDKDVSAYT 209
            L  L     ++S + K     D  +  A++D Y+KCG +D A  +F    G ++V ++T
Sbjct: 314 NLKQLALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWT 373

Query: 210 SAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
           + I G   N     A  LF  M+   + P+  +Y  VL+A
Sbjct: 374 AMIGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTA 413



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 157/352 (44%), Gaps = 47/352 (13%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFD---- 66
           VFV NSLI  YS CG V +A+ VF + +  D+VSWN+++ G + N   LE L+LF     
Sbjct: 236 VFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRA 295

Query: 67  KMPQRNDVSWNS-----------------------------------ILGGLVRFGSVDD 91
            M + +  ++++                                   I+    + G +DD
Sbjct: 296 SMAKLSQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDD 355

Query: 92  ACRVFNQMP-KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           A  +F  MP  +++VSW  +I G  QN     A ALF  M+  +++PN     ++L+A  
Sbjct: 356 AFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTASI 415

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
            +        +++ I K   +    +  AL+  Y+K G+ + A+ +F     KDV A+++
Sbjct: 416 PI----LLPQIHAQIIKTNYQHAPSVGTALLASYSKLGNTEEALSIFKMIDHKDVVAWSA 471

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC-SHLGWVEKGFYYFHSMFDV 269
            +   +  G    A  +F  M  +G+ P+  +  + + AC S    +++G   FH++   
Sbjct: 472 MLSCYSQAGDCDGATNVFIKMSMQGMKPNEFTISSAIDACASPTAGIDQG-RQFHAISIK 530

Query: 270 HGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
           +  +  +   + +V +  R G ++ A   +       D V W +++     H
Sbjct: 531 YRYQDAICVGSALVTMYARKGSIDSAR-IVFERQTDRDLVSWNSMISGYAQH 581



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 69/138 (50%), Gaps = 2/138 (1%)

Query: 179 ALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISP 238
           AL+DMY KCG ++    VF     ++V  +TS + G        +   LF  M+++G+ P
Sbjct: 140 ALVDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWP 199

Query: 239 DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENF 298
           +  ++ +VLSA +  G V+ G    H+     G +  +     ++++  + GL+EEA+  
Sbjct: 200 NPFTFTSVLSAVASQGAVDLG-RRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAV 258

Query: 299 IASMPMKPDNVIWGTLLG 316
              M  + D V W TL+ 
Sbjct: 259 FRQMETR-DMVSWNTLMA 275


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  360 bits (924), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 195/540 (36%), Positives = 306/540 (56%), Gaps = 40/540 (7%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM-- 68
           VF+   L+  Y  CG + DAR V D   +  VVSW +MI+GY +    +E L LF KM  
Sbjct: 45  VFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLR 104

Query: 69  -------------------PQR------------------NDVSWNSILGGLVRFGSVDD 91
                              PQ                   +    +S+L    +  ++ +
Sbjct: 105 AGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQE 164

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           A RVF+ +P+R +VS   +ISG+AQ G  +EAL LFR++ S  ++ N     +L++A + 
Sbjct: 165 ARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSG 224

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSA 211
           L +LDYG  V++ I +K +     L  +LIDMY+KCG +  + +VF +  ++ V ++ + 
Sbjct: 225 LASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAM 284

Query: 212 IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG 271
           + G   +G   E   LF+++  K + PDS++ +AVLS CSH G V++G   F ++     
Sbjct: 285 LMGYGRHGLGHEVISLFKDLH-KEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQS 343

Query: 272 IKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIG 331
                 HY C++DLLGR+G LE+A N I +MP +    IWG+LLGACRVH N  +G+ + 
Sbjct: 344 ALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVGELVA 403

Query: 332 NMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEF 391
             L+E +  + G Y++LSNIY      ++  +VRK M ++ + + PG S I LD V+H F
Sbjct: 404 QKLLEMEPENAGNYVILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKVIHTF 463

Query: 392 LAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAF 451
            + +R H   ++I    +EI   IK  G+  +   V+ D+++E+KE ++  HSEKLA+ F
Sbjct: 464 HSSERFHPSKKDINAKIKEIFVDIKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITF 523

Query: 452 GLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           GL+ T PG  IR++KN+RIC DCH+  K VSKV++R+IS+RD+  +H    G+C+C +YW
Sbjct: 524 GLMNTPPGLTIRVMKNLRICVDCHNFAKFVSKVYEREISLRDKNRFHLLTHGNCTCGDYW 583



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 126/254 (49%), Gaps = 41/254 (16%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++VK +F   +FV +SL+  Y+    +++AR VFD   + DVVS  ++I+GY + G   E
Sbjct: 136 LLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEE 195

Query: 61  GLKLFDKM----PQRNDVSWNSILGGLVRFGSVD-------------------------- 90
            L LF ++     Q N V++ +++  L    S+D                          
Sbjct: 196 ALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLID 255

Query: 91  --DAC-------RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
               C       RVF+ M +RS+VSW  ++ G+ ++G   E ++LF+++   +++P+S  
Sbjct: 256 MYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHK-EVKPDSVT 314

Query: 142 LVSLLSACAQLGALDYGNWVY-SYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
           L+++LS C+  G +D G  ++ + ++++   L +     +ID+  + G ++ A+ +  + 
Sbjct: 315 LLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENM 374

Query: 201 GDKDVSAYTSAIFG 214
             +   +   ++ G
Sbjct: 375 PFESTPSIWGSLLG 388



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 83/157 (52%), Gaps = 11/157 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNG---E 57
           ++++    + V ++NSLI  YS CG++  +R VFD   +  VVSWN+M+ GY R+G   E
Sbjct: 237 LILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHE 296

Query: 58  ILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV-----SWVVLIS 112
           ++   K   K  + + V+  ++L G    G VD+   +F+ + K          +  +I 
Sbjct: 297 VISLFKDLHKEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIID 356

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
              ++GR ++AL L   ++++  E   +I  SLL AC
Sbjct: 357 LLGRSGRLEKALNL---IENMPFESTPSIWGSLLGAC 390



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 75/158 (47%), Gaps = 1/158 (0%)

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
           ++AC +  AL  G  V++ +     +    L   L+ MY +CG++D A  V     ++ V
Sbjct: 17  ITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSV 76

Query: 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHS 265
            ++T+ I G +     +EA +LF  M   G  P+  +   VL++CS    + +G    HS
Sbjct: 77  VSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQG-KQVHS 135

Query: 266 MFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP 303
           +      +  +   + ++D+  ++  ++EA     ++P
Sbjct: 136 LLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLP 173


>gi|302816284|ref|XP_002989821.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
 gi|300142387|gb|EFJ09088.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
          Length = 941

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 188/546 (34%), Positives = 302/546 (55%), Gaps = 44/546 (8%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           +V V NS+I  Y  CG+   A  VF+     D VSWN++IN  V N +  + L+LF  M 
Sbjct: 396 EVAVGNSVITMYGKCGQTEAAMSVFEAMPRKDDVSWNAVINASVGNSKFQDALELFHGME 455

Query: 70  ----QRNDVSWNSIL---GGL---------------------------------VRFGSV 89
               + N+ +  S+L   GGL                                  R GS+
Sbjct: 456 LEGLRSNEFTLLSLLEACGGLEDLKLARQIHARAAAGGFGGNSTAVGNSVVNMYARCGSL 515

Query: 90  DDACRVFNQMPKRSLVSWVVLISGFAQ--NGRPKEALALFREMQSLDLEPNSAILVSLLS 147
            DA + F+ + ++ LV+W ++++ +AQ  +G  + A   F+EM++  ++P     VS L 
Sbjct: 516 LDAKKAFDSLEEKGLVAWSIILAAYAQSKDGPGRRAFKFFQEMEAEGIKPGEVTFVSALD 575

Query: 148 ACAQLGALDYGNWVYSYIQKKC-IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
           ACA +  L++G  ++        ++   +L   +I+MY KCGS   A  VF    +K + 
Sbjct: 576 ACAAMATLEHGRSMHRRAAASGFVETSLVLGNTIINMYGKCGSPSDAKLVFDQMPEKCLI 635

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
           ++ S I   A NGH++EA    + M  +G  PDS + +++L   SH G +E+G  +F S 
Sbjct: 636 SWNSLIVAYAHNGHALEALSSLQEMLLQGFDPDSGTSVSILYGLSHAGLLERGVEHFRSS 695

Query: 267 FDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPM-KPDNVIWGTLLGACRVHRNAE 325
              HG++P      C+VDLL R G L+ AE  I + P  + D + W TLL AC+ + + +
Sbjct: 696 IQDHGLEPSSGQLKCLVDLLARKGFLDAAEELILASPACQADTIAWMTLLAACKSYGDPQ 755

Query: 326 MGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELD 385
            G R    + E +  H G +++L+N+Y    +  +A  +RK M +  +K+ PGCS IEL 
Sbjct: 756 RGIRCAERVFELEPQHSGSFVVLANLYASVGRWSDASRIRKMMERMSVKKEPGCSWIELS 815

Query: 386 GVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSE 445
           G VHEF++G+  H K +EI +  E++  +++  GY  +T +V+ D+EE +KE ++  HSE
Sbjct: 816 GSVHEFISGESKHPKIREICEDLEKLTLRMREAGYVPDTTNVVHDVEEGDKEEILSRHSE 875

Query: 446 KLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSC 505
           +LA+ FGL+ T+PG  IR+VKN+R+CSDCH+A K++S V  R+I +RD   +HHF+ G C
Sbjct: 876 RLAIVFGLMSTRPGETIRVVKNLRVCSDCHAATKIISSVVGREIVVRDSSRFHHFKHGQC 935

Query: 506 SCLEYW 511
           SC ++W
Sbjct: 936 SCGDFW 941



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 152/338 (44%), Gaps = 41/338 (12%)

Query: 20  FYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM------PQR-- 71
            Y  C RV DA  VFD     +V SW  M+  Y +NG   E L+LF +M      P +  
Sbjct: 1   MYGKCARVTDALMVFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEGTRPDKVV 60

Query: 72  -------------------------------NDVSWNSILGGLVRFGSVDDACRVFNQMP 100
                                          N +  NS++    +   V  A +VF+ M 
Sbjct: 61  FVIALDACAASGELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGML 120

Query: 101 KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNW 160
            R +VSW  +++ +AQNG   +AL     M +  ++PN    V+++  CA+L  LD G  
Sbjct: 121 LRDVVSWTAMLAVYAQNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLGRK 180

Query: 161 VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGH 220
           ++  I  + ++ D IL  AL+ MY  CGS D    VF   G   V  +T+ I G + NG 
Sbjct: 181 IHHRIINEGLEPDGILGNALVHMYGSCGSFDDMKSVFSRMGQSSVLLWTTMIAGCSQNGQ 240

Query: 221 SIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA 280
             E   +F  M  +G+  + ++Y++++  C +L  V++G      + +       L   +
Sbjct: 241 YEEGLLVFRKMDLEGVKANEVTYMSMVEVCRNLDAVKEGEMIDARILESPFCSSTLLATS 300

Query: 281 CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
            ++ L G+ G+L+ A+  +  M  + D V W  ++ AC
Sbjct: 301 -LISLYGQCGILDRAKGLLEHMYQR-DVVAWNAMVTAC 336



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/355 (26%), Positives = 165/355 (46%), Gaps = 40/355 (11%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VV +    ++ + NSL+  Y  C  V  A  VFD     DVVSW +M+  Y +NG   + 
Sbjct: 84  VVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGMLLRDVVSWTAMLAVYAQNGCWSQA 143

Query: 62  LKLFDKMP----QRNDVSW------------------------------NSILG-GLVRF 86
           L+   +M     + N V++                              + ILG  LV  
Sbjct: 144 LECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLGRKIHHRIINEGLEPDGILGNALVHM 203

Query: 87  ----GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
               GS DD   VF++M + S++ W  +I+G +QNG+ +E L +FR+M    ++ N    
Sbjct: 204 YGSCGSFDDMKSVFSRMGQSSVLLWTTMIAGCSQNGQYEEGLLVFRKMDLEGVKANEVTY 263

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
           +S++  C  L A+  G  + + I +      ++L  +LI +Y +CG +D A  +      
Sbjct: 264 MSMVEVCRNLDAVKEGEMIDARILESPFCSSTLLATSLISLYGQCGILDRAKGLLEHMYQ 323

Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
           +DV A+ + +   A NG + EA  L   M  +G   + ++Y++VL AC++L  + +G   
Sbjct: 324 RDVVAWNAMVTACAQNGDNWEAIHLLRRMDMEGFGANKVTYLSVLEACANLEALSQGREI 383

Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
              +     ++ E+     ++ + G+ G  E A +   +MP K D+V W  ++ A
Sbjct: 384 HARVLLCGLLQREVAVGNSVITMYGKCGQTEAAMSVFEAMPRK-DDVSWNAVINA 437



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 168/349 (48%), Gaps = 24/349 (6%)

Query: 89  VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148
           V DA  VF+ +  +++ SW ++++ ++QNG  +EAL LF  MQ     P+  + V  L A
Sbjct: 8   VTDALMVFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEGTRPDKVVFVIALDA 67

Query: 149 CAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAY 208
           CA  G LD+G  ++S +    +  + I+  +L++MY KC  +  A +VF     +DV ++
Sbjct: 68  CAASGELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGMLLRDVVSW 127

Query: 209 TSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD 268
           T+ +   A NG   +A E    M ++G+ P+ ++++ ++  C+ L  ++ G    H + +
Sbjct: 128 TAMLAVYAQNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLGRKIHHRIIN 187

Query: 269 VHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQ 328
             G++P+      +V + G  G  ++ ++  + M  +   ++W T++  C  +   E G 
Sbjct: 188 -EGLEPDGILGNALVHMYGSCGSFDDMKSVFSRMG-QSSVLLWTTMIAGCSQNGQYEEGL 245

Query: 329 RI-GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRK-TMRKRKIKRAPGC------- 379
            +   M +E  + ++  Y+ +    VE  +  N + V++  M   +I  +P C       
Sbjct: 246 LVFRKMDLEGVKANEVTYMSM----VEVCR--NLDAVKEGEMIDARILESPFCSSTLLAT 299

Query: 380 SLIELDGVVHEFLAGDRSHEKTQEIYQ----FWEEIVKKIKNYGYNVET 424
           SLI L G        DR+    + +YQ     W  +V      G N E 
Sbjct: 300 SLISLYGQCGIL---DRAKGLLEHMYQRDVVAWNAMVTACAQNGDNWEA 345



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/359 (23%), Positives = 157/359 (43%), Gaps = 44/359 (12%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++++ F     +  SLI  Y  CG +  A+ + +     DVV+WN+M+    +NG+  E 
Sbjct: 286 ILESPFCSSTLLATSLISLYGQCGILDRAKGLLEHMYQRDVVAWNAMVTACAQNGDNWEA 345

Query: 62  LKLFDKMP----------------------------------------QRNDVSWNSILG 81
           + L  +M                                         QR     NS++ 
Sbjct: 346 IHLLRRMDMEGFGANKVTYLSVLEACANLEALSQGREIHARVLLCGLLQREVAVGNSVIT 405

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G  + A  VF  MP++  VSW  +I+    N + ++AL LF  M+   L  N   
Sbjct: 406 MYGKCGQTEAAMSVFEAMPRKDDVSWNAVINASVGNSKFQDALELFHGMELEGLRSNEFT 465

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCA-ALIDMYAKCGSIDLAMQVFHSY 200
           L+SLL AC  L  L     +++         +S     ++++MYA+CGS+  A + F S 
Sbjct: 466 LLSLLEACGGLEDLKLARQIHARAAAGGFGGNSTAVGNSVVNMYARCGSLLDAKKAFDSL 525

Query: 201 GDKDVSAYT--SAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEK 258
            +K + A++   A +  + +G    AF+ F+ M+++GI P  +++++ L AC+ +  +E 
Sbjct: 526 EEKGLVAWSIILAAYAQSKDGPGRRAFKFFQEMEAEGIKPGEVTFVSALDACAAMATLEH 585

Query: 259 GFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
           G            ++  L     ++++ G+ G   +A+     MP K   + W +L+ A
Sbjct: 586 GRSMHRRAAASGFVETSLVLGNTIINMYGKCGSPSDAKLVFDQMPEKC-LISWNSLIVA 643


>gi|115473599|ref|NP_001060398.1| Os07g0636900 [Oryza sativa Japonica Group]
 gi|113611934|dbj|BAF22312.1| Os07g0636900, partial [Oryza sativa Japonica Group]
          Length = 352

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 171/351 (48%), Positives = 236/351 (67%)

Query: 161 VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGH 220
           V+ +++   I+LD  L  ALIDMYAKCG I+ A +VF    +KDV  ++S I GLA +G 
Sbjct: 2   VHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHGL 61

Query: 221 SIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA 280
             E+  LF  M S+G+ P+ ++++ VL AC+H+G V +G  YF SM +VHGI+P ++HY 
Sbjct: 62  GHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYG 121

Query: 281 CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQN 340
           CMVDLLGR+G +EEA   I SM  +PD +IW  LLGACR+H+N E+ +     L   D  
Sbjct: 122 CMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACRIHKNVEIAEEAMAKLRVLDPL 181

Query: 341 HDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEK 400
            DG Y+LLSNIY +    E   E+RKT+R+  I+R PG S IE D  +HEF++GDR H +
Sbjct: 182 GDGHYVLLSNIYAQANSWEGVAEMRKTIRRDNIQRIPGRSSIEWDEKIHEFVSGDRLHPR 241

Query: 401 TQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGS 460
           ++EIY+  EE++ ++K  GY   T  V+ DI+E+ KE  +  HSEKLA+AF L+ T   S
Sbjct: 242 SKEIYRVLEEMMDRLKQAGYKPMTGLVLQDIDEQSKERSLAEHSEKLAIAFALLTTPARS 301

Query: 461 VIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
            IRI KN+R C DCHSAMKL+S V+ RK+ +RDR  +HHF +G CSC +YW
Sbjct: 302 TIRITKNLRACEDCHSAMKLISLVYDRKLIVRDRNRFHHFSEGQCSCKDYW 352



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 12/157 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V  N    D+ +  +LI  Y+ CG +  A+ VFD   + DV +W+SMI G   +G   E 
Sbjct: 6   VESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHGLGHES 65

Query: 62  LKLFDKM----PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVV-----LIS 112
           L LF KM     + N V++  +L      G V +  + F  M +   +   V     ++ 
Sbjct: 66  LSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYGCMVD 125

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
              ++G  +EA  L R   S+  EP++ I  +LL AC
Sbjct: 126 LLGRSGHVEEARQLIR---SMTFEPDTIIWRALLGAC 159



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 33/164 (20%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           G ++ A RVF++MP++ + +W  +I G A +G   E+L+LF +M S  ++PN    V +L
Sbjct: 29  GDIESAQRVFDRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVL 88

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
            AC  +G +  G   +                              +M   H   +  V 
Sbjct: 89  IACTHVGLVSEGKKYFR-----------------------------SMNEVHGI-EPTVE 118

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250
            Y   +  L  +GH  EA +L  +M      PD+I + A+L AC
Sbjct: 119 HYGCMVDLLGRSGHVEEARQLIRSMT---FEPDTIIWRALLGAC 159


>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
          Length = 720

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 194/549 (35%), Positives = 308/549 (56%), Gaps = 40/549 (7%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEI---- 58
           +K  F Y+  V N+ +  Y+ CG +  A+ VF       V SWN++I G+ ++ +     
Sbjct: 172 LKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSL 231

Query: 59  ---------------------------LEGLKLFDKMP--------QRNDVSWNSILGGL 83
                                      L+ L+L  ++         +R+   + S+L   
Sbjct: 232 DAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLY 291

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
           +  G +     +F+ M  +SLVSW  +I+G+ QNG P  AL +FR+M    ++     ++
Sbjct: 292 IHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMM 351

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
            +  AC+ L +L  G   ++Y  K  ++ D+ +  +LIDMYAK GSI  + +VF+   +K
Sbjct: 352 PVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEK 411

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
             +++ + I G  ++G + EA +LFE M+  G +PD ++++ VL+AC+H G + +G  Y 
Sbjct: 412 STASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYL 471

Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS-MPMKPDNVIWGTLLGACRVHR 322
             M    G+KP L HYAC++D+LGRAG L++A   +A  M  + D  IW +LL +CR+H+
Sbjct: 472 DQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQ 531

Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
           N EMG+++   L E +      Y+LLSN+Y    K E+  +VR+ M +  +++  GCS I
Sbjct: 532 NLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWI 591

Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
           EL+  V  F+ G+R  +  +EI   W  +  KI   GY  +T SV  D+ EEEK   +  
Sbjct: 592 ELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRG 651

Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
           HSEKLAL +GLI T  G+ IR+ KN+RIC DCH+A KL+SKV +R+I +RD K +HHF++
Sbjct: 652 HSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKN 711

Query: 503 GSCSCLEYW 511
           G CSC +YW
Sbjct: 712 GVCSCGDYW 720



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/381 (22%), Positives = 170/381 (44%), Gaps = 43/381 (11%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNG------ 56
           VK     ++ + N+L+  YS CG + +A+ +F  +++ +VVSWN+M+ G+   G      
Sbjct: 69  VKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTF 128

Query: 57  ----EILEG--------LKLFDKMP-----------------------QRNDVSWNSILG 81
               ++L G        + + + +P                         N++  N+ + 
Sbjct: 129 DVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVA 188

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + GS+  A RVF+ +  +++ SW  LI G AQ+  P+ +L    +M+   L P+S  
Sbjct: 189 SYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFT 248

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           + SLLSAC++L +L  G  V+ +I +  ++ D  +  +++ +Y  CG +     +F +  
Sbjct: 249 VCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAME 308

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
           DK + ++ + I G   NG    A  +F  M   GI    IS + V  ACS L  +  G  
Sbjct: 309 DKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLG-R 367

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
             H+    H ++ +      ++D+  + G + ++      +  K     W  ++    +H
Sbjct: 368 EAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEK-STASWNAMIMGYGIH 426

Query: 322 RNAEMGQRIGNMLIESDQNHD 342
             A+   ++   +  +  N D
Sbjct: 427 GLAKEAIKLFEEMQRTGHNPD 447



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 103/236 (43%), Gaps = 42/236 (17%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++N    D+FV  S++  Y  CG +   + +FD  +D  +VSWN++I GY++NG     
Sbjct: 272 IIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRA 331

Query: 62  LKLFDKMP----QRNDVSWNSILGG----------------------------------- 82
           L +F +M     Q   +S   + G                                    
Sbjct: 332 LGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDM 391

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + GS+  + +VFN + ++S  SW  +I G+  +G  KEA+ LF EMQ     P+    
Sbjct: 392 YAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTF 451

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSIL--CAALIDMYAKCGSIDLAMQV 196
           + +L+AC   G +  G   Y    K    L   L   A +IDM  + G +D A++V
Sbjct: 452 LGVLTACNHSGLIHEG-LRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRV 506



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/290 (22%), Positives = 119/290 (41%), Gaps = 60/290 (20%)

Query: 41  DVVSWNSMINGYVRNGEILEGLKLFDKMPQRN-------DVS------------------ 75
           + VSWNSMI  +  NG   E   L  +M + N       DV+                  
Sbjct: 2   NFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLG 61

Query: 76  -----W-------------NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQN 117
                W             N+++    + G + +A  +F     +++VSW  ++ GF+  
Sbjct: 62  KGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAE 121

Query: 118 GRPKEALALFREMQS--LDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI 175
           G       + R+M +   D++ +   +++ +  C     L     ++ Y  K+    + +
Sbjct: 122 GDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNEL 181

Query: 176 LCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG 235
           +  A +  YAKCGS+  A +VFH    K V+++ + I G A +     + +    MK  G
Sbjct: 182 VANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISG 241

Query: 236 ISPDSISYIAVLSACSHL---------------GWVEKGFYYFHSMFDVH 270
           + PDS +  ++LSACS L                W+E+  + + S+  ++
Sbjct: 242 LLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLY 291



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 79/157 (50%), Gaps = 6/157 (3%)

Query: 102 RSLVSWVVLISGFAQNGRPKEALALFREMQSLD----LEPNSAILVSLLSACAQLGALDY 157
           R+ VSW  +I  F+ NG  +E+  L  EM   +      P+ A LV++L  CA+   +  
Sbjct: 1   RNFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGL 60

Query: 158 GNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAM 217
           G  V+ +  K  +  + +L  AL+DMY+KCG I  A  +F    +K+V ++ + + G + 
Sbjct: 61  GKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSA 120

Query: 218 NGHSIEAFELFENMKSKG--ISPDSISYIAVLSACSH 252
            G +   F++   M + G  +  D ++ +  +  C H
Sbjct: 121 EGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFH 157


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 194/551 (35%), Positives = 302/551 (54%), Gaps = 40/551 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + +K     ++FV ++L   YS CG + DA  VF+E    D VSW +MI+GY + GE  E
Sbjct: 131 LALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEE 190

Query: 61  GLKLFDKMP---------------------------------------QRNDVSWNSILG 81
            L  F KM                                        + +    N++  
Sbjct: 191 ALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTD 250

Query: 82  GLVRFGSVDDACRVFN-QMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
              + G ++ A  VF      R++VS+  LI G+ +  + ++ L++F E++   +EPN  
Sbjct: 251 MYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEF 310

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
              SL+ ACA   AL+ G  +++ + K     D  + + L+DMY KCG ++ A+Q F   
Sbjct: 311 TFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEI 370

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
           GD    A+ S +     +G   +A ++FE M  +G+ P++I++I++L+ CSH G VE+G 
Sbjct: 371 GDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGL 430

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
            YF+SM   +G+ P  +HY+C++DLLGRAG L+EA+ FI  MP +P+   W + LGACR+
Sbjct: 431 DYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRI 490

Query: 321 HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS 380
           H + EMG+     L++ +  + G  +LLSNIY    + E+   VR  MR   +K+ PG S
Sbjct: 491 HGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYS 550

Query: 381 LIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVI 440
            +++    H F A D SH +   IY+  + ++ +IK  GY   T SV  D+++  KE ++
Sbjct: 551 WVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQIKAAGYVPRTDSVPLDMDDSMKEKLL 610

Query: 441 GYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF 500
             HSE++A+AF LI    G  I + KN+R+C DCHSA+K +SKV  RKI +RD   +HHF
Sbjct: 611 HRHSERIAVAFALISMPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVRDNSRFHHF 670

Query: 501 EDGSCSCLEYW 511
            DGSCSC +YW
Sbjct: 671 TDGSCSCGDYW 681



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 164/347 (47%), Gaps = 46/347 (13%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ 70
            F+ N L+  YS CG +  A  +FD     ++VSW +MI+G  +N +  E ++ F  M  
Sbjct: 40  TFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRI 99

Query: 71  RNDV----SWNSILGGLVRFGSVD-----------------------------------D 91
             +V    +++S +      GS++                                   D
Sbjct: 100 CGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFD 159

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           AC+VF +MP +  VSW  +I G+++ G  +EAL  F++M   ++  +  +L S L AC  
Sbjct: 160 ACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGA 219

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD-KDVSAYTS 210
           L A  +G  V+S + K   + D  +  AL DMY+K G ++ A  VF    + ++V +YT 
Sbjct: 220 LKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTC 279

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I G        +   +F  ++ +GI P+  ++ +++ AC++   +E+G    H+   V 
Sbjct: 280 LIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQG-TQLHA--QVM 336

Query: 271 GIKPELDHY--ACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
            I  + D +  + +VD+ G+ GLLE+A      +   P  + W +L+
Sbjct: 337 KINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIG-DPTEIAWNSLV 382


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 197/547 (36%), Positives = 301/547 (55%), Gaps = 51/547 (9%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           +V + N++I     C  V +AR +F+   D D ++W +M+ G+ +NG   + L  F +M 
Sbjct: 205 NVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMR 264

Query: 70  QR----NDVSWNSILGGLVRFGSVDDA----------------------------CR--- 94
            +    +  ++ SIL       +++                              CR   
Sbjct: 265 FQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIK 324

Query: 95  ----VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
                F +M  ++++SW  LI G+ QNG  +EA+ +F EMQ   ++P+   L S++S+CA
Sbjct: 325 PAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCA 384

Query: 151 QLGALDYGNWVYSYIQKKCIKLDS------ILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
            L +L+ G       Q  C+ L S       +  AL+ +Y KCGSI+ A ++F      D
Sbjct: 385 NLASLEEG------AQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHD 438

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
             ++T+ + G A  G + E  +LFE M +K + PD +++I VLSACS  G+VEKG  YFH
Sbjct: 439 QVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFH 498

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
           SM   HGI P  DHY CM+DL  R+G L+EAE FI  MPM PD + WGTLL ACR+  + 
Sbjct: 499 SMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDM 558

Query: 325 EMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIEL 384
           E+GQ     L+E D  +   Y+LL +++          ++R+ MR R++K+ PGCS I+ 
Sbjct: 559 EIGQWAAENLLEIDPQNPASYVLLCSMHATKGNWNQVAQLRRGMRDRQVKKEPGCSWIKY 618

Query: 385 DGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHS 444
              VH F A D+SH  ++ IY+  E +  K+   GY  +  SV+ D+ + +K  ++ +HS
Sbjct: 619 KNKVHIFSADDQSHPFSKGIYEKLEWLNSKMLEEGYKPDVSSVLHDVADTDKVHMVSHHS 678

Query: 445 EKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGS 504
           EKLA+AFGL+       IRIVKN+R+C DCH+A KL+SK+  R I +RD   +H F +G 
Sbjct: 679 EKLAIAFGLMFVPHEMPIRIVKNLRVCVDCHNATKLISKITGRDILVRDAVRFHKFSNGV 738

Query: 505 CSCLEYW 511
           CSC ++W
Sbjct: 739 CSCGDFW 745



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 86/270 (31%), Positives = 148/270 (54%), Gaps = 2/270 (0%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           + ++  Y + G I +  ++FD+M  +N V +N+++ GL+R   V++A R+F  M  R  +
Sbjct: 179 SPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCI 238

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           +W  +++GF QNG   +AL  FR M+   +  +     S+L+AC  L AL+ G  +++YI
Sbjct: 239 TWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYI 298

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
            +     +  + +AL+DMY+KC SI  A   F     K++ ++T+ I G   NG S EA 
Sbjct: 299 IRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAV 358

Query: 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL 285
            +F  M+  GI PD  +  +V+S+C++L  +E+G   FH +  V G+   +     +V L
Sbjct: 359 RVFSEMQRDGIDPDDFTLGSVISSCANLASLEEG-AQFHCLALVSGLMHYITVSNALVTL 417

Query: 286 LGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
            G+ G +E+A      M +  D V W  L+
Sbjct: 418 YGKCGSIEDAHRLFDEM-LFHDQVSWTALV 446



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 82/380 (21%), Positives = 155/380 (40%), Gaps = 70/380 (18%)

Query: 46  NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
           N ++  Y + G      ++FD  P  N  ++N++L  L     +DD   +F  M +R  V
Sbjct: 45  NHLLTAYGKAGRHARARRVFDATPHPNLFTYNALLSTLAHARLLDDMDSLFASMAQRDTV 104

Query: 106 SWVVLISGFAQNGRPKEALALFREM--QSLDLEPNSAILVSLLSACAQLGALDYGNWVYS 163
           S+  +I+GF+  G    A+ L+  +      + P+   + +++ A + LG    G   + 
Sbjct: 105 SYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASALGDRALGRQFHC 164

Query: 164 YIQKKCIKLDSILCAALIDMYAK-------------------------------CGSIDL 192
            I +    +++ + + L+ MYAK                               C  ++ 
Sbjct: 165 QILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEE 224

Query: 193 AMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSH 252
           A ++F    D+D   +T+ + G   NG   +A   F  M+ +GI+ D  ++ ++L+AC  
Sbjct: 225 ARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGA 284

Query: 253 LGWVEKG----FYYFHSMFD---------------VHGIKP-----------ELDHYACM 282
           L  +E+G     Y   + +D                  IKP            +  +  +
Sbjct: 285 LSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTAL 344

Query: 283 VDLLGRAGLLEEAENFIASMP---MKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQ 339
           +   G+ G  EEA    + M    + PD+   G+++ +C    + E G +   + + S  
Sbjct: 345 IVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGL 404

Query: 340 NHDGRYILLSNIYVETLKGE 359
            H   YI +SN  V TL G+
Sbjct: 405 MH---YITVSNALV-TLYGK 420


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 194/551 (35%), Positives = 302/551 (54%), Gaps = 40/551 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + +K     ++FV ++L   YS CG + DA  VF+E    D VSW +MI+GY + GE  E
Sbjct: 66  LALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEE 125

Query: 61  GLKLFDKMP---------------------------------------QRNDVSWNSILG 81
            L  F KM                                        + +    N++  
Sbjct: 126 ALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTD 185

Query: 82  GLVRFGSVDDACRVFN-QMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
              + G ++ A  VF      R++VS+  LI G+ +  + ++ L++F E++   +EPN  
Sbjct: 186 MYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEF 245

Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
              SL+ ACA   AL+ G  +++ + K     D  + + L+DMY KCG ++ A+Q F   
Sbjct: 246 TFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEI 305

Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
           GD    A+ S +     +G   +A ++FE M  +G+ P++I++I++L+ CSH G VE+G 
Sbjct: 306 GDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGL 365

Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
            YF+SM   +G+ P  +HY+C++DLLGRAG L+EA+ FI  MP +P+   W + LGACR+
Sbjct: 366 DYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRI 425

Query: 321 HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS 380
           H + EMG+     L++ +  + G  +LLSNIY    + E+   VR  MR   +K+ PG S
Sbjct: 426 HGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYS 485

Query: 381 LIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVI 440
            +++    H F A D SH +   IY+  + ++ +IK  GY   T SV  D+++  KE ++
Sbjct: 486 WVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQIKAAGYVPRTDSVPLDMDDSMKEKLL 545

Query: 441 GYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF 500
             HSE++A+AF LI    G  I + KN+R+C DCHSA+K +SKV  RKI +RD   +HHF
Sbjct: 546 HRHSERIAVAFALISMPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVRDNSRFHHF 605

Query: 501 EDGSCSCLEYW 511
            DGSCSC +YW
Sbjct: 606 TDGSCSCGDYW 616



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 98/199 (49%), Gaps = 1/199 (0%)

Query: 99  MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
           MP+R+LVSW  +ISG +QN +  EA+  F  M+     P      S + ACA LG+++ G
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
             ++    K  I  +  + + L DMY+KCG++  A +VF     KD  ++T+ I G +  
Sbjct: 61  KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 120

Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDH 278
           G   EA   F+ M  + ++ D     + L AC  L   + G    HS     G + ++  
Sbjct: 121 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFG-RSVHSSVVKLGFESDIFV 179

Query: 279 YACMVDLLGRAGLLEEAEN 297
              + D+  +AG +E A N
Sbjct: 180 GNALTDMYSKAGDMESASN 198


>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 684

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 188/510 (36%), Positives = 297/510 (58%), Gaps = 27/510 (5%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           +++N    +V+V ++L+  Y+    ++ AR VFD     D+VSWN M+  Y  N E   G
Sbjct: 202 ILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLTAYFLNKEYERG 261

Query: 62  LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
           L LF +M ++  +  N                            SW   ISG  QNG+ +
Sbjct: 262 LGLFHQM-RKEGIKLNQ--------------------------ASWNAAISGCMQNGQHE 294

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
            AL +  +MQ   ++PN   +VS L  C  L +L  G  ++ Y+ +     D  +  AL+
Sbjct: 295 LALGILCKMQDSGIKPNRITIVSALPGCTNLESLRGGKEIHGYVFRHWFIEDVTITTALV 354

Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
            +YAKCG ++L+  VF++   KDV A+ + I   +M+G   E+  LF  M   G+ P+S+
Sbjct: 355 LLYAKCGDLELSRHVFNTMPRKDVVAWNTMIMANSMHGKGGESLILFNKMLDSGVEPNSV 414

Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
           ++I VLS CSH    ++G   F+SM   H I P+ DHY+CMVD+L RAG LEEA +FI  
Sbjct: 415 TFIGVLSGCSHSQLADEGLLVFNSMSSEHSITPDADHYSCMVDVLSRAGRLEEAYDFIRK 474

Query: 302 MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361
           MP++P    WG LLGACRV++N E+G    + L E + ++ G Y+LLSNI V   K   A
Sbjct: 475 MPIEPTAAAWGALLGACRVYKNVELGTLAASQLFEIEPDNAGNYVLLSNILVTAKKWVEA 534

Query: 362 EEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYN 421
            E+RK MR + + + PG S +++   V+ F+ GD+S+E+   IY+F +EI +K++  GY 
Sbjct: 535 SEIRKMMRDKGLAKTPGRSWVQVKNKVYSFVTGDKSNEQKDMIYRFLDEIDEKMRLDGYQ 594

Query: 422 VETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLV 481
             T  V+ ++++E++E  +  HSE+LA+AFG++ +   + +R+ KN+RIC DCH+A+KL+
Sbjct: 595 PNTDFVLQNVDQEQREETLCSHSERLAVAFGILNSSGKTTVRVFKNLRICGDCHNAIKLI 654

Query: 482 SKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           +K+   +I +RD   +HHF DG C+C ++W
Sbjct: 655 AKIVGMQIIVRDSLRFHHFRDGYCTCNDFW 684



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 122/247 (49%), Gaps = 16/247 (6%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           G +  A  +F+++P+  L +W +LISG  Q+G PK+A+ ++  + S ++ P+  +L+S+ 
Sbjct: 25  GDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPDKFVLLSVA 84

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
            ACA  G L     ++    +     D +L  ALIDM+ KC  ++ A  VF     KDV 
Sbjct: 85  KACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVKDVV 144

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
           ++TS  +     G   +   LF  M   GI  +S++  ++L AC+          Y    
Sbjct: 145 SWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACAD---------YIKLG 195

Query: 267 FDVHG--IKPELDH----YACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320
            +VHG  ++ E++      + +V++   +  L++A     SM  + D V W  +L A  +
Sbjct: 196 REVHGFILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHR-DIVSWNVMLTAYFL 254

Query: 321 HRNAEMG 327
           ++  E G
Sbjct: 255 NKEYERG 261



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 80/371 (21%), Positives = 150/371 (40%), Gaps = 78/371 (21%)

Query: 25  GRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRND----------- 73
           G ++ A ++FD+  + D+ +W  +I+G+ ++G   + + ++  +  RN            
Sbjct: 25  GDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPDKFVLLSVA 84

Query: 74  ---------VSWNSILGGLVRFGSVDD------------ACR-------VFNQMPKRSLV 105
                    V    I    ++FG   D             C+       VF+ M  + +V
Sbjct: 85  KACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVKDVV 144

Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           SW  +   +   G  ++ + LFREM    +  NS  + S+L ACA    +  G  V+ +I
Sbjct: 145 SWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACADY--IKLGREVHGFI 202

Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV-------------------- 205
            +  ++ +  + +AL++MYA    +  A  VF S   +D+                    
Sbjct: 203 LRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLTAYFLNKEYERGL 262

Query: 206 ---------------SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250
                          +++ +AI G   NG    A  +   M+  GI P+ I+ ++ L  C
Sbjct: 263 GLFHQMRKEGIKLNQASWNAAISGCMQNGQHELALGILCKMQDSGIKPNRITIVSALPGC 322

Query: 251 SHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVI 310
           ++L  + +G    H     H    ++     +V L  + G LE + +   +MP K D V 
Sbjct: 323 TNLESL-RGGKEIHGYVFRHWFIEDVTITTALVLLYAKCGDLELSRHVFNTMPRK-DVVA 380

Query: 311 WGTLLGACRVH 321
           W T++ A  +H
Sbjct: 381 WNTMIMANSMH 391



 Score = 38.9 bits (89), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 61/148 (41%), Gaps = 12/148 (8%)

Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
           LI      G +  A+ +F    + D+  +T  I G   +G   +A +++  + S+ + PD
Sbjct: 17  LIKTCLNSGDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPD 76

Query: 240 SISYIAVLSACSHLG--WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAEN 297
               ++V  AC+  G   V K  +     F   G   +L     ++D+ G+   +  A  
Sbjct: 77  KFVLLSVAKACAASGDLVVAKKIHDDAIQF---GFNKDLVLGNALIDMFGKCKFVNGARC 133

Query: 298 FIASMPMKPDNVIWGTLL------GACR 319
               M +K D V W ++       G CR
Sbjct: 134 VFDDMVVK-DVVSWTSMTYCYVNCGMCR 160


>gi|326499323|dbj|BAK06152.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 580

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 185/427 (43%), Positives = 280/427 (65%), Gaps = 2/427 (0%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           G +  A ++F+ +  RS+V+W  +ISG+ QNG  +  + +++EMQ+    P+S   V+ L
Sbjct: 154 GQLGVARKLFDAIRDRSVVAWNAMISGYEQNGLAERGIGVYKEMQAAKAVPDSMTFVATL 213

Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
           SACAQ GALD G  V   +  + + +   L +AL++MYA+CG +D A + F +  +++V 
Sbjct: 214 SACAQAGALDLGREVERRVVSERMDISVFLGSALVNMYARCGVVDKARRWFDALQERNVV 273

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
            +TS I G  M+GH  EA +LF  M+ +G  P+ ++++AVLSAC+H G V +G   F  M
Sbjct: 274 TWTSMIAGYGMHGHGREAIKLFHLMRCEGPPPNHVTFVAVLSACAHAGLVMEGRDAFACM 333

Query: 267 FDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS-MPMKPDNVIWGTLLGACRVHRNAE 325
             V+G+ P ++HY  MVD+ GRAGLL+EA  FI+  MP +P   +W  +LGAC++H+N  
Sbjct: 334 KRVYGLVPRVEHYCSMVDMFGRAGLLDEAMQFISDYMPGEPGPEVWTAVLGACKMHKNFN 393

Query: 326 MGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELD 385
           +G  +   LI  +  +   ++LLSNIY  + K  + E+VR TM KR++K+  G SLIEL 
Sbjct: 394 LGVEVAERLIALEPENPSYHVLLSNIYALSGKMHHVEKVRNTMIKRRLKKQIGFSLIELG 453

Query: 386 GVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSE 445
           G  H F  G++SH +T EIY + EE++ +I   GY  ET SV+ ++EEEE+E  + YHSE
Sbjct: 454 GTSHLFRMGEKSHPQTTEIYHYLEELIHRITAAGYMPETESVLHELEEEEREGALRYHSE 513

Query: 446 KLALAFGLICTKPGSV-IRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGS 504
           KLA+A+GL+ +   +  IR++KN+RIC DCH A+K +S V  R+I +RD+  +HHF+DG 
Sbjct: 514 KLAVAYGLMMSVGSTTPIRVIKNLRICGDCHLAIKFMSAVENREIVVRDKHRFHHFKDGK 573

Query: 505 CSCLEYW 511
           CSCLEYW
Sbjct: 574 CSCLEYW 580



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 137/285 (48%), Gaps = 46/285 (16%)

Query: 7   FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFD 66
           F  D FV  +L+  YS CG++  AR +FD   D  VV+WN+MI+GY +NG    G+ ++ 
Sbjct: 136 FGSDRFVLTALVVLYSKCGQLGVARKLFDAIRDRSVVAWNAMISGYEQNGLAERGIGVYK 195

Query: 67  KM------------------------------------PQRNDVS---WNSILGGLVRFG 87
           +M                                     +R D+S    ++++    R G
Sbjct: 196 EMQAAKAVPDSMTFVATLSACAQAGALDLGREVERRVVSERMDISVFLGSALVNMYARCG 255

Query: 88  SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLS 147
            VD A R F+ + +R++V+W  +I+G+  +G  +EA+ LF  M+     PN    V++LS
Sbjct: 256 VVDKARRWFDALQERNVVTWTSMIAGYGMHGHGREAIKLFHLMRCEGPPPNHVTFVAVLS 315

Query: 148 ACAQLGALDYGNWVYSYIQKKCIKLDSI--LCAALIDMYAKCGSIDLAMQVFHSY--GDK 203
           ACA  G +  G   ++ +++    +  +   C +++DM+ + G +D AMQ    Y  G+ 
Sbjct: 316 ACAHAGLVMEGRDAFACMKRVYGLVPRVEHYC-SMVDMFGRAGLLDEAMQFISDYMPGEP 374

Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248
               +T+ +    M+ +     E+ E + +  + P++ SY  +LS
Sbjct: 375 GPEVWTAVLGACKMHKNFNLGVEVAERLIA--LEPENPSYHVLLS 417



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 79/145 (54%)

Query: 115 AQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDS 174
           A +G P  A+A +R + S  L  +S    ++  ACA L AL  G  ++++        D 
Sbjct: 81  AHHGLPVAAIAFYRGLLSAALPFSSFTFTAVAKACADLSALRTGAAIHAHSILLGFGSDR 140

Query: 175 ILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK 234
            +  AL+ +Y+KCG + +A ++F +  D+ V A+ + I G   NG +     +++ M++ 
Sbjct: 141 FVLTALVVLYSKCGQLGVARKLFDAIRDRSVVAWNAMISGYEQNGLAERGIGVYKEMQAA 200

Query: 235 GISPDSISYIAVLSACSHLGWVEKG 259
              PDS++++A LSAC+  G ++ G
Sbjct: 201 KAVPDSMTFVATLSACAQAGALDLG 225



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 15/159 (9%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VV       VF+ ++L+  Y+ CG V  AR  FD   + +VV+W SMI GY  +G   E 
Sbjct: 232 VVSERMDISVFLGSALVNMYARCGVVDKARRWFDALQERNVVTWTSMIAGYGMHGHGREA 291

Query: 62  LKLFDKM----PQRNDVSWNSIL-----GGLVRFGSVDDAC--RVFNQMPKRSLVSWVVL 110
           +KLF  M    P  N V++ ++L      GLV  G    AC  RV+  +P+  +  +  +
Sbjct: 292 IKLFHLMRCEGPPPNHVTFVAVLSACAHAGLVMEGRDAFACMKRVYGLVPR--VEHYCSM 349

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
           +  F + G   EA+    +   +  EP   +  ++L AC
Sbjct: 350 VDMFGRAGLLDEAMQFISDY--MPGEPGPEVWTAVLGAC 386


>gi|296086445|emb|CBI32034.3| unnamed protein product [Vitis vinifera]
          Length = 593

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 184/439 (41%), Positives = 281/439 (64%), Gaps = 16/439 (3%)

Query: 77  NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136
           NS++        +D A  VF++M +RSLVSW V+I  F + G    AL LF EMQ    E
Sbjct: 167 NSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFDAALNLFGEMQKF-FE 225

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
           P+   + S+ +ACA +G+L  G           I  D +L  +L+DMY KCGS++LA+Q+
Sbjct: 226 PDGYTIQSIANACAGMGSLSLG-----------IVNDVLLNTSLVDMYCKCGSLELALQL 274

Query: 197 FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM-KSKGISPDSISYIAVLSACSHLGW 255
           FH    +DV+++ S I G + +G    A E F  M +++ + P++I+++ VLSAC+H G 
Sbjct: 275 FHRMPKRDVTSWNSMILGFSTHGEVAAALEYFGCMVRTEKLMPNAITFVGVLSACNHGGL 334

Query: 256 VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
           V +G  YF  M   + IKPEL+HY C+VDLL RAGL++EA + +++MPM+PD VIW +LL
Sbjct: 335 VSEGRRYFDVMVTEYKIKPELEHYGCLVDLLARAGLIDEALDVVSNMPMRPDLVIWRSLL 394

Query: 316 GAC-RVHRNAEMGQRIGNMLIESDQN-HDGRYILLSNIYVETLKGENAEEVRKTMRKRKI 373
            AC + +   E+ + +   ++E++     G Y+LLS +Y    +  +   VRK M  + +
Sbjct: 395 DACCKQNAGVELSEEMARRVLEAEGGVCSGVYVLLSRVYASASRWNDVGMVRKLMTDKGV 454

Query: 374 KRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVET-RSVMFDIE 432
            + PGCS IE+DGV HEF AGD SH +T+EIY   + I ++++  GY+ ++ ++ M D  
Sbjct: 455 VKEPGCSSIEIDGVAHEFFAGDTSHPQTEEIYSALDVIEERVERVGYSPDSSQAPMVDET 514

Query: 433 EEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIR 492
            + K+  +  HSE+LA+AFGL+ TKPG  IRI KN+R+C++CH   KL+S+VF R+I +R
Sbjct: 515 IDGKQYSLRLHSERLAIAFGLLKTKPGMPIRIFKNLRVCNNCHQVTKLISRVFNREIIVR 574

Query: 493 DRKHYHHFEDGSCSCLEYW 511
           DR  +HHF+DG+CSC++YW
Sbjct: 575 DRIRFHHFKDGACSCMDYW 593



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 112/224 (50%), Gaps = 29/224 (12%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           ++K  F  DV++ NSL+ FY+ C R+  A+ VFD   +  +VSWN +I+ +VR GE    
Sbjct: 154 ILKLGFDSDVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFDAA 213

Query: 62  LKLFDKMPQ--------------------------RNDVSWN-SILGGLVRFGSVDDACR 94
           L LF +M +                           NDV  N S++    + GS++ A +
Sbjct: 214 LNLFGEMQKFFEPDGYTIQSIANACAGMGSLSLGIVNDVLLNTSLVDMYCKCGSLELALQ 273

Query: 95  VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM-QSLDLEPNSAILVSLLSACAQLG 153
           +F++MPKR + SW  +I GF+ +G    AL  F  M ++  L PN+   V +LSAC   G
Sbjct: 274 LFHRMPKRDVTSWNSMILGFSTHGEVAAALEYFGCMVRTEKLMPNAITFVGVLSACNHGG 333

Query: 154 ALDYGNWVYS-YIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
            +  G   +   + +  IK +      L+D+ A+ G ID A+ V
Sbjct: 334 LVSEGRRYFDVMVTEYKIKPELEHYGCLVDLLARAGLIDEALDV 377


>gi|357462829|ref|XP_003601696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490744|gb|AES71947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  359 bits (922), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 189/507 (37%), Positives = 287/507 (56%), Gaps = 30/507 (5%)

Query: 5   NSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKL 64
           + F  D  VK+SL+  Y+        R VFD   +L  +SW +MI+GY R+G  LE L+L
Sbjct: 140 SPFFEDDVVKSSLVDMYAKFELPDYGRAVFDSIFELSSISWTAMISGYARSGRKLEALEL 199

Query: 65  FDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEAL 124
           F + P +N  +W +++ GLV+ G+ +DA  +F +M +R  VS                  
Sbjct: 200 FRESPFKNLYAWTALISGLVQSGNANDALYLFVEM-RREGVSIA---------------- 242

Query: 125 ALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMY 184
                        +  +L S++ ACA     + G  V+  +     +    +  AL+DMY
Sbjct: 243 -------------DPLVLSSVVGACANSAVRELGKQVHCVVITLGYESCLFISNALVDMY 289

Query: 185 AKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYI 244
           AKC  +  A  +F     KDV ++TS I G A +G + EA  L+++M   G+ P+ ++++
Sbjct: 290 AKCSDVVAAKYIFCEMRRKDVVSWTSIIVGTAQHGLAEEALTLYDDMVLAGVKPNEVTFV 349

Query: 245 AVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPM 304
            ++ ACSH+G V KG   F SM +  GI+P L HY C++DL  R+G L+EAEN I +MP+
Sbjct: 350 GLIYACSHVGLVSKGRALFKSMVEDFGIRPSLQHYTCLLDLFSRSGHLDEAENLIRTMPV 409

Query: 305 KPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEV 364
           KPD   W  LL AC+ H N +M  RI + L++        YILLSNIY      EN   V
Sbjct: 410 KPDEPTWAALLSACKHHGNTKMAVRIADHLLDLKPEDPSSYILLSNIYAGAGMWENVSMV 469

Query: 365 RKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVET 424
           RK M  +++K+ PG S ++L      F AG+ S     EI     ++  +++  GY  +T
Sbjct: 470 RKLMAVKEVKKVPGYSCVDLGREFQVFHAGEASQPMKDEILGLMTKLDSEMRRRGYVPDT 529

Query: 425 RSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKV 484
            SV+ D++++EKE  + +HSE+LALA+GL+   PG+ IRIVKN+R+C DCH+ +KL+S +
Sbjct: 530 SSVLLDMDQQEKERQLFWHSERLALAYGLLKAVPGTTIRIVKNLRVCGDCHTVLKLISAI 589

Query: 485 FKRKISIRDRKHYHHFEDGSCSCLEYW 511
             R+I +RD K YHHF+DG CSC ++W
Sbjct: 590 TSREIYVRDVKRYHHFKDGKCSCNDFW 616



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 88/182 (48%), Gaps = 6/182 (3%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           G + DA ++F+ +P++  V+W  ++S    +  P +A ++   +    L+P+  +  SL+
Sbjct: 57  GLLKDALKLFDALPQQDHVAWATVLSACNLSNLPHKAFSISLPILHEGLQPDHFVFSSLI 116

Query: 147 SACAQLGA--LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
            ACA LG+  +  G  +++         D ++ ++L+DMYAK    D    VF S  +  
Sbjct: 117 KACANLGSVHVKLGKQLHARFLLSPFFEDDVVKSSLVDMYAKFELPDYGRAVFDSIFELS 176

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
             ++T+ I G A +G  +EA ELF     K +     ++ A++S     G      Y F 
Sbjct: 177 SISWTAMISGYARSGRKLEALELFRESPFKNL----YAWTALISGLVQSGNANDALYLFV 232

Query: 265 SM 266
            M
Sbjct: 233 EM 234



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 43/78 (55%)

Query: 179 ALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISP 238
            LID Y KCG +  A+++F +   +D  A+ + +    ++    +AF +   +  +G+ P
Sbjct: 48  TLIDAYGKCGLLKDALKLFDALPQQDHVAWATVLSACNLSNLPHKAFSISLPILHEGLQP 107

Query: 239 DSISYIAVLSACSHLGWV 256
           D   + +++ AC++LG V
Sbjct: 108 DHFVFSSLIKACANLGSV 125


>gi|357131197|ref|XP_003567226.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Brachypodium distachyon]
          Length = 648

 Score =  359 bits (922), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 179/428 (41%), Positives = 271/428 (63%), Gaps = 11/428 (2%)

Query: 94  RVFNQMP--KRSLVSWVVLISGFAQNGRPKEALALFREMQSLD---LEPNSAILVSLLSA 148
           +VF++MP   R LVSW  ++S  +QNG   +AL L+  M+  D   +EP++  LVS+LS+
Sbjct: 222 QVFDEMPAASRDLVSWNAVLSAHSQNGLAVDALDLYSRMRGCDGHGVEPDAVTLVSVLSS 281

Query: 149 CAQLGALDYGNWVYSYIQKKC--IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
           CA LGA   G  V  Y++ K    + +  LC ALI+ YA+CG +  A Q+F+    K + 
Sbjct: 282 CAHLGARSVGLGVERYMRGKLPGFRTNVQLCNALINFYARCGCLPQAQQLFNEMPRKSIV 341

Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
           ++T+ I G  M+GH   A  LF+ M S+GI PD+++ + +LSACSH G  ++G  YF +M
Sbjct: 342 SWTALITGYGMHGHGEVAINLFQTMVSEGIRPDNVAMVGLLSACSHAGMYDEGRKYFSAM 401

Query: 267 FDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEM 326
              + ++P L+HY CMVDLLGRAG L+EA   I+SMPM  D  +WG LLGAC++H+N E+
Sbjct: 402 ESAYQLRPTLEHYTCMVDLLGRAGRLKEARELISSMPMPADGAVWGALLGACKIHKNVEI 461

Query: 327 GQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDG 386
           G+     +IE +  + G Y+L++NIY +T + +    VR  MR+R +K+ PGCS +E  G
Sbjct: 462 GEEAFEHVIEVEPTNVGYYVLMANIYTDTGQLDCVVRVRAMMRERGLKKEPGCSYVEHKG 521

Query: 387 VVHEFLAGDRSHEKTQEIYQF---WEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYH 443
            VH F+A D SH + + IY+     E++VK+  +    ++   ++    E+    +IG+H
Sbjct: 522 RVHLFMADDHSHPQAKRIYELVLKLEQMVKEKTDGTVGIQGGRMIEGHSEKTAVPLIGFH 581

Query: 444 SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
           SEKLA+AFG++ T  GS I ++KN+R+C +CHS +K VS +  R   +RD   +H FEDG
Sbjct: 582 SEKLAVAFGMLNTV-GSEIAVIKNLRVCGNCHSFLKTVSAIANRVFLVRDASRFHRFEDG 640

Query: 504 SCSCLEYW 511
           +CSC +YW
Sbjct: 641 ACSCKDYW 648



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 130/289 (44%), Gaps = 55/289 (19%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDE--SDDLDVVSWNSMINGYVRNGEILEGLKLFDK 67
           +  V N LI  Y+  G    AR VFDE  +   D+VSWN++++ + +NG  ++ L L+ +
Sbjct: 201 ETSVANCLISVYARRGAAL-ARQVFDEMPAASRDLVSWNAVLSAHSQNGLAVDALDLYSR 259

Query: 68  M---------PQ----------------------------------RNDVSW-NSILGGL 83
           M         P                                   R +V   N+++   
Sbjct: 260 MRGCDGHGVEPDAVTLVSVLSSCAHLGARSVGLGVERYMRGKLPGFRTNVQLCNALINFY 319

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
            R G +  A ++FN+MP++S+VSW  LI+G+  +G  + A+ LF+ M S  + P++  +V
Sbjct: 320 ARCGCLPQAQQLFNEMPRKSIVSWTALITGYGMHGHGEVAINLFQTMVSEGIRPDNVAMV 379

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKC---IKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
            LLSAC+  G  D G   +S ++        L+   C  ++D+  + G +  A ++  S 
Sbjct: 380 GLLSACSHAGMYDEGRKYFSAMESAYQLRPTLEHYTC--MVDLLGRAGRLKEARELISSM 437

Query: 201 GDKDVSAYTSAIFGLAMNGHSIE-AFELFENMKSKGISPDSISYIAVLS 248
                 A   A+ G      ++E   E FE++    + P ++ Y  +++
Sbjct: 438 PMPADGAVWGALLGACKIHKNVEIGEEAFEHVIE--VEPTNVGYYVLMA 484



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/272 (23%), Positives = 126/272 (46%), Gaps = 18/272 (6%)

Query: 68  MPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVV------LISGFAQNGRPK 121
           +P  +    +++L    R G +  A ++ ++MP  S     +      LISG A +  P 
Sbjct: 94  LPSSDAYLVSALLSSYSRLGLLPCAHQLLDEMPLASTPPATLCTAFNSLISGCALHALPA 153

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
              ALFR M+   +  ++  L++L+ A            +++   +  +  ++ +   LI
Sbjct: 154 ACFALFRRMRVAGVRFDAVTLLTLVPAAPP----SVVPQLHALAARAGLAAETSVANCLI 209

Query: 182 DMYAKCGSIDLAMQVFH--SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMK---SKGI 236
            +YA+ G+  LA QVF       +D+ ++ + +   + NG +++A +L+  M+     G+
Sbjct: 210 SVYARRGAA-LARQVFDEMPAASRDLVSWNAVLSAHSQNGLAVDALDLYSRMRGCDGHGV 268

Query: 237 SPDSISYIAVLSACSHLGWVEKGFYYFHSMF-DVHGIKPELDHYACMVDLLGRAGLLEEA 295
            PD+++ ++VLS+C+HLG    G      M   + G +  +     +++   R G L +A
Sbjct: 269 EPDAVTLVSVLSSCAHLGARSVGLGVERYMRGKLPGFRTNVQLCNALINFYARCGCLPQA 328

Query: 296 ENFIASMPMKPDNVIWGTLLGACRVHRNAEMG 327
           +     MP K   V W  L+    +H + E+ 
Sbjct: 329 QQLFNEMPRK-SIVSWTALITGYGMHGHGEVA 359



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 80/168 (47%), Gaps = 12/168 (7%)

Query: 7   FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFD 66
           F  +V + N+LI FY+ CG +  A+ +F+E     +VSW ++I GY  +G     + LF 
Sbjct: 305 FRTNVQLCNALINFYARCGCLPQAQQLFNEMPRKSIVSWTALITGYGMHGHGEVAINLFQ 364

Query: 67  KMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMP-----KRSLVSWVVLISGFAQN 117
            M     + ++V+   +L      G  D+  + F+ M      + +L  +  ++    + 
Sbjct: 365 TMVSEGIRPDNVAMVGLLSACSHAGMYDEGRKYFSAMESAYQLRPTLEHYTCMVDLLGRA 424

Query: 118 GRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           GR KEA  L   + S+ +  + A+  +LL AC     ++ G   + ++
Sbjct: 425 GRLKEAREL---ISSMPMPADGAVWGALLGACKIHKNVEIGEEAFEHV 469


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 189/547 (34%), Positives = 313/547 (57%), Gaps = 37/547 (6%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDL-DVVSWNSMINGYVRNGEILE 60
           VVKN + +   ++ +L+  YS C  V +A  +F  +D   +VV+W +MI G+V+N    +
Sbjct: 332 VVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEK 391

Query: 61  GLKLFDKMPQR----NDVSWNSILGG-------------------------------LVR 85
            + LF +M +     N  +++++L G                                V+
Sbjct: 392 AVDLFCQMSREGVRPNHFTYSTVLAGKPSSLLSQLHAQIIKAYYEKVPSVATALLDAYVK 451

Query: 86  FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
            G+V ++ RVF  +P + +V+W  +++G AQ    ++A+ +F ++    ++PN     S+
Sbjct: 452 TGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSV 511

Query: 146 LSACAQLGA-LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
           ++AC+   A +++G  +++   K        + +AL+ MY+K G+I+ A +VF    ++D
Sbjct: 512 INACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERD 571

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           + ++ S I G   +G + +A E+F+ M+++G+  D +++I VL+AC+H G VE+G  YF+
Sbjct: 572 IVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFN 631

Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
            M   + I  +++HY+CMVDL  RAG+ ++A + I  MP      IW TLL ACRVHRN 
Sbjct: 632 IMIKDYHIDKKIEHYSCMVDLYSRAGMFDKAMDIINGMPFPASPTIWRTLLAACRVHRNL 691

Query: 325 EMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIEL 384
           E+G+     L+    N    Y+LLSNI+      E    VRK M +RK+K+  GCS IE+
Sbjct: 692 ELGKLAAEKLVSLQPNDAVGYVLLSNIHAVAGNWEEKAHVRKLMDERKVKKEAGCSWIEI 751

Query: 385 DGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHS 444
              +  FLAGD SH  +  +Y   EE+  K+K+ GY  +T  V  D+EEE KE ++  HS
Sbjct: 752 KNRIFSFLAGDVSHPFSDLVYAKLEELSIKLKDMGYQPDTNYVFHDVEEEHKEAILSQHS 811

Query: 445 EKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGS 504
           E+LA+A+GLI   PG+ I+I KN+RIC DCH+ ++L+S + +R + +RD   +HHF+ G 
Sbjct: 812 ERLAIAYGLIALPPGAPIQIEKNLRICGDCHNVIELISLIEERTLIVRDSNRFHHFKGGV 871

Query: 505 CSCLEYW 511
           CSC  YW
Sbjct: 872 CSCGGYW 878



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 96/366 (26%), Positives = 170/366 (46%), Gaps = 47/366 (12%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           M+VKN F +  FV N+LI  Y     V DA  VFD     D V+WN MI GY   G  LE
Sbjct: 230 MIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLE 289

Query: 61  GLKLFDKM-------------------PQRNDVSWNSILG-GLVRFG------------- 87
           G ++F +M                    Q+ ++++   L  G+V+ G             
Sbjct: 290 GFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMV 349

Query: 88  ------SVDDACRVFNQM-PKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
                 SVD+A ++F+      ++V+W  +I GF QN   ++A+ LF +M    + PN  
Sbjct: 350 TYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHF 409

Query: 141 ILVSLLSA-CAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
              ++L+   + L +  +   + +Y +    K+ S+   AL+D Y K G++  + +VF+S
Sbjct: 410 TYSTVLAGKPSSLLSQLHAQIIKAYYE----KVPSV-ATALLDAYVKTGNVVESARVFYS 464

Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
              KD+ A+++ + GLA    S +A E+F  +  +G+ P+  ++ +V++ACS      + 
Sbjct: 465 IPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEH 524

Query: 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACR 319
               H+     G    L   + ++ +  + G +E AE        + D V W +++    
Sbjct: 525 GKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEER-DIVSWNSMITGYG 583

Query: 320 VHRNAE 325
            H +A+
Sbjct: 584 QHGDAK 589



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 159/375 (42%), Gaps = 48/375 (12%)

Query: 3   VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
           +K+ F  DV V  SL+  Y       D R +FDE    +VVSW S+++GY RNG   E +
Sbjct: 131 LKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVI 190

Query: 63  KLFDKMPQR----NDVSWNSILGGL----------------------------------- 83
            L ++M       N  ++ ++LG L                                   
Sbjct: 191 HLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMY 250

Query: 84  VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
           ++   V DA  VF+ M  R  V+W ++I G+A  G   E   +F  M+   ++ +  +  
Sbjct: 251 LKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFC 310

Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
           + L  C+Q   L++   ++  + K   +    +  AL+  Y+KC S+D A ++F S  D 
Sbjct: 311 TALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLF-SMADA 369

Query: 204 --DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
             +V  +T+ I G   N ++ +A +LF  M  +G+ P+  +Y  VL+     G       
Sbjct: 370 AHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVLA-----GKPSSLLS 424

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
             H+       +        ++D   + G + E+     S+P K D V W  +L      
Sbjct: 425 QLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAK-DIVAWSAMLTGLAQT 483

Query: 322 RNAEMGQRIGNMLIE 336
           R++E    +   L++
Sbjct: 484 RDSEKAMEVFIQLVK 498



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 127/301 (42%), Gaps = 50/301 (16%)

Query: 12  FVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLF------ 65
           F+ +  + F S+  R R A  +FDE+   D+  +N ++  + RN    E L LF      
Sbjct: 39  FLYHQSLPFISLPSRPRYAHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSS 98

Query: 66  --------------------DKMPQRN------------DVS-WNSILGGLVRFGSVDDA 92
                               D++  R             DVS   S++   ++    +D 
Sbjct: 99  GLGVDGLTLSCALKVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDG 158

Query: 93  CRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQL 152
             +F++M  +++VSW  L+SG+A+NG   E + L  +MQ   + PN     ++L A A  
Sbjct: 159 RGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADE 218

Query: 153 GALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAI 212
             ++ G  V++ I K   +  + +C ALI MY K   +  A  VF S   +D   +   I
Sbjct: 219 SIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMI 278

Query: 213 FGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS-----------HLGWVEKGFY 261
            G A  G  +E F++F  M+  G+      +   L  CS           H G V+ G+ 
Sbjct: 279 GGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYE 338

Query: 262 Y 262
           +
Sbjct: 339 F 339



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 110/228 (48%), Gaps = 6/228 (2%)

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           A ++F++ P + +  +  L+  F++N   +EAL LF+++ S  L  +   L   L  C  
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGV 116

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSA 211
           L     G  V+    K     D  +  +L+DMY K    +    +F   G K+V ++TS 
Sbjct: 117 LFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSL 176

Query: 212 IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG 271
           + G A NG + E   L   M+ +G++P+  ++  VL A +    +E G    H+M   +G
Sbjct: 177 LSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGV-QVHAMIVKNG 235

Query: 272 IKPELDHYAC--MVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
              E   + C  ++ +  ++ ++ +AE    SM ++ D+V W  ++G 
Sbjct: 236 F--EFTTFVCNALICMYLKSEMVGDAEAVFDSMVVR-DSVTWNIMIGG 280


>gi|449516914|ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At5g52630-like [Cucumis
           sativus]
          Length = 598

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 199/539 (36%), Positives = 301/539 (55%), Gaps = 40/539 (7%)

Query: 12  FVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM--- 68
            V ++LI  YS       +  VFDE+      +W+S+I+ + +N   L  L+ F +M   
Sbjct: 61  LVSHNLINLYSKTQLPLFSLQVFDETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLND 120

Query: 69  ---------P---------QRNDVS------------------WNSILGGLVRFGSVDDA 92
                    P         +R+DV                    +S++    + G + DA
Sbjct: 121 GVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDA 180

Query: 93  CRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQL 152
             +F++MP+R++VSW  +I G+AQ     EAL LF++    D++ N     S++  C+  
Sbjct: 181 RHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSSS 240

Query: 153 GALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAI 212
             L+ G  ++    K      S + +ALI +Y+KCG I+ A QVF     +++  + S +
Sbjct: 241 TFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSML 300

Query: 213 FGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGI 272
              A + H+   F LFE M + G+ P+ I +++VL ACSH G VEKG  YF  M D +GI
Sbjct: 301 IACAQHAHTQRVFGLFEEMGNVGMKPNFIXFLSVLYACSHAGLVEKGREYFSLMRD-YGI 359

Query: 273 KPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGN 332
           +PE +HYA +VDLLGRAG L+EA + I  MPM+P   +WG LL  CR+H++ EM   + +
Sbjct: 360 EPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTGCRIHKDTEMAAFVAD 419

Query: 333 MLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFL 392
            ++E D +  G ++LLSN Y    + E A  +RK +R R +K+  G S +E    VH F 
Sbjct: 420 RILEMDSSSSGLHVLLSNAYAAAGRYEEAARMRKMLRDRGVKKETGLSWVEEGNKVHTFT 479

Query: 393 AGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFG 452
           AGDRSH K  EIY+  EE+ ++++  GY  +T  V+  ++ EEK   I YHSE+LA+AFG
Sbjct: 480 AGDRSHAKWVEIYEKLEELEEEMEKAGYVADTSFVLRAVDGEEKNETIRYHSERLAIAFG 539

Query: 453 LICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
           LI   PG  IR++KN+R+C DCH+A+K +SK   R + +RD   +H FEDG CSC +YW
Sbjct: 540 LITFPPGRPIRVMKNLRVCGDCHAAIKFMSKCCGRVLIVRDNNRFHRFEDGKCSCGDYW 598



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 126/261 (48%), Gaps = 43/261 (16%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + VK  +  DVFV +SL+  Y+ CG + DAR +FDE  + +VVSW+ MI GY +  + +E
Sbjct: 151 LAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVE 210

Query: 61  GLKLFDKM----PQRNDVSWNSI-----------LGGLV--------------------- 84
            L LF +        ND +++S+           LG L+                     
Sbjct: 211 ALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALIS 270

Query: 85  ---RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + G ++ A +VF+++P R+L  W  ++   AQ+   +    LF EM ++ ++PN   
Sbjct: 271 LYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFIX 330

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
            +S+L AC+  G ++ G   +S ++   I+ ++   A+L+D+  + G +  A+ V     
Sbjct: 331 FLSVLYACSHAGLVEKGREYFSLMRDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMP 390

Query: 202 DKDVSAYTSAIFGLAMNGHSI 222
            +     T +++G  + G  I
Sbjct: 391 MRP----TESVWGALLTGCRI 407



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 90/209 (43%), Gaps = 15/209 (7%)

Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
            E N   + +LL +  +  +L  G  ++++I K  ++   ++   LI++Y+K      ++
Sbjct: 21  FEQNYRQICNLLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSL 80

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
           QVF     K  + ++S I   A N   + A + F  M + G+ PD   Y +   AC  L 
Sbjct: 81  QVFDETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLR 140

Query: 255 WVEKGFYYFHSMFDVHGIKPELDHY------ACMVDLLGRAGLLEEAENFIASMPMKPDN 308
             + G         VH +  +  +Y      + +VD+  + G + +A +    MP + + 
Sbjct: 141 RSDVG-------KSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPER-NV 192

Query: 309 VIW-GTLLGACRVHRNAEMGQRIGNMLIE 336
           V W G + G  ++    E        LIE
Sbjct: 193 VSWSGMIYGYAQLDDGVEALTLFKQALIE 221


>gi|357507741|ref|XP_003624159.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87162577|gb|ABD28372.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499174|gb|AES80377.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 755

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 182/502 (36%), Positives = 292/502 (58%), Gaps = 46/502 (9%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           D ++++SL++ Y  CGR+  A  +                                    
Sbjct: 300 DGYIRSSLVEMYGKCGRMDKASTIL----------------------------------- 324

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE 129
              DV  N      +R G+    C+     PK  +VSW  ++SG+  NG+ ++ +  FR 
Sbjct: 325 --KDVPLN-----FLRKGNFGVTCK----EPKARMVSWSSMVSGYVWNGKYEDGMKTFRS 373

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
           M    +  +   + +++SACA  G L++G  +++YIQK  +++D+ + ++LIDMY+K GS
Sbjct: 374 MVCELIVVDIRTVATIISACANAGILEFGKQIHAYIQKIGLRIDAYVGSSLIDMYSKSGS 433

Query: 190 IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
           +D A+ +F    + +V  +TS I G A++G   EA  LFE M + GI P+ ++++ VL+A
Sbjct: 434 LDDALMIFEQIKEPNVVLWTSMISGCALHGQGKEAISLFEGMLNLGIIPNEVTFVGVLNA 493

Query: 250 CSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNV 309
           CSH+G +E+G  YF  M D + I PE++HY  MV+L GRAG L EA+NFI    +     
Sbjct: 494 CSHVGLIEEGCRYFRMMKDTYHINPEVEHYTSMVNLYGRAGHLIEAKNFIFENSISHFTS 553

Query: 310 IWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMR 369
           +W + L +CR+H+N  MG+ +  ML++S  +    YILLSN+     + + A  VR  M 
Sbjct: 554 VWRSFLSSCRLHKNFNMGKSVSEMLLQSAPSDPDAYILLSNMCSSNHQWDEAAIVRSLMY 613

Query: 370 KRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMF 429
           +R +K+ PG S ++L   +H F  GDRSH + +EIY + + ++ ++K  GY+++ + VM 
Sbjct: 614 QRGVKKQPGQSWVQLKDQIHSFTVGDRSHPQDKEIYSYLDSLIGRLKEIGYSLDAKLVMQ 673

Query: 430 DIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKI 489
           D+EEE+ E +I +HSEKLAL F +I T P + IRI+KN+RIC+DCH+  K  S++ +R+I
Sbjct: 674 DVEEEQGEVLISHHSEKLALVFSIINTSPRTPIRIMKNLRICNDCHNFFKYASQLLEREI 733

Query: 490 SIRDRKHYHHFEDGSCSCLEYW 511
            +RD   +HHF+  SCSC EYW
Sbjct: 734 IVRDTHRFHHFKQSSCSCGEYW 755



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 143/306 (46%), Gaps = 18/306 (5%)

Query: 32  WVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDD 91
           W+       DVV  NS+++ Y++  E       F+ M +++ VSWN ++G  +R G V+ 
Sbjct: 159 WILRNGVGGDVVLENSILDLYLKCKEFEYAESFFELMIEKDVVSWNIMIGAYLREGDVEK 218

Query: 92  ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
           +  +F   P + +VSW  +I G  Q G  + AL     M +   E +       L   + 
Sbjct: 219 SLEMFRNFPNKDVVSWNTIIDGLIQCGYERLALEQLYCMVAHGTEFSPVTFSIALILVSS 278

Query: 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV-------FHSYGDKD 204
           L  ++ G  ++  +    +  D  + ++L++MY KCG +D A  +       F   G+  
Sbjct: 279 LSLVEVGRQLHGRVLTFGLNSDGYIRSSLVEMYGKCGRMDKASTILKDVPLNFLRKGNFG 338

Query: 205 VS---------AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGW 255
           V+         +++S + G   NG   +  + F +M  + I  D  +   ++SAC++ G 
Sbjct: 339 VTCKEPKARMVSWSSMVSGYVWNGKYEDGMKTFRSMVCELIVVDIRTVATIISACANAGI 398

Query: 256 VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
           +E G    H+     G++ +    + ++D+  ++G L++A   I     +P+ V+W +++
Sbjct: 399 LEFG-KQIHAYIQKIGLRIDAYVGSSLIDMYSKSGSLDDAL-MIFEQIKEPNVVLWTSMI 456

Query: 316 GACRVH 321
             C +H
Sbjct: 457 SGCALH 462



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 124/262 (47%), Gaps = 33/262 (12%)

Query: 75  SWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQN-GRPKEALALFREMQSL 133
           S N +L   V+  ++D A ++F+++  ++  +W +LISGFA+  G  +   +LFREMQ+ 
Sbjct: 69  SANYLLTLYVKSSNLDHAHKLFDEITHKNTQTWTILISGFARAAGSSELVFSLFREMQAD 128

Query: 134 DLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC------ 187
              PN   L S+L  C++   + +G  ++++I +  +  D +L  +++D+Y KC      
Sbjct: 129 GACPNQYTLSSVLKCCSRENNIQFGKGIHAWILRNGVGGDVVLENSILDLYLKCKEFEYA 188

Query: 188 -------------------------GSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSI 222
                                    G ++ ++++F ++ +KDV ++ + I GL   G+  
Sbjct: 189 ESFFELMIEKDVVSWNIMIGAYLREGDVEKSLEMFRNFPNKDVVSWNTIIDGLIQCGYER 248

Query: 223 EAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACM 282
            A E    M + G     +++   L   S L  VE G    H      G+  +    + +
Sbjct: 249 LALEQLYCMVAHGTEFSPVTFSIALILVSSLSLVEVG-RQLHGRVLTFGLNSDGYIRSSL 307

Query: 283 VDLLGRAGLLEEAENFIASMPM 304
           V++ G+ G +++A   +  +P+
Sbjct: 308 VEMYGKCGRMDKASTILKDVPL 329


>gi|242054799|ref|XP_002456545.1| hypothetical protein SORBIDRAFT_03g038140 [Sorghum bicolor]
 gi|241928520|gb|EES01665.1| hypothetical protein SORBIDRAFT_03g038140 [Sorghum bicolor]
          Length = 640

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 202/556 (36%), Positives = 311/556 (55%), Gaps = 52/556 (9%)

Query: 8   AYDVFVKNSLIQFYSVCGRVRDARWVFDE------SDDLDVVSWNSMINGYVRNGEILEG 61
           A D ++ ++L+  YS  G +  A  + DE             ++NS+I+G   +   +  
Sbjct: 85  AADAYLLSALLTSYSRLGCLPLAHQLLDEMPLESTPHTTLRTAFNSVISGCALHALPVAS 144

Query: 62  LKLFDKM------------------------PQRNDVSW-----------NSILGGLVRF 86
             LF +M                        PQ + ++            N ++    R 
Sbjct: 145 FALFRRMRAAAVGFDAVTLLALVPATPLSVVPQVHALAARVGLATETSVANCLMSTYARG 204

Query: 87  GSVDDAC--RVFNQMP--KRSLVSWVVLISGFAQNGRPKEALALFREMQSLD---LEPNS 139
           G+   A   RVF++MP   R LVSW  ++S  AQNG   +AL L+R M+S +   +EP++
Sbjct: 205 GAFGAALARRVFDEMPLASRDLVSWNAVLSAHAQNGLAVDALELYRRMRSPEGSGVEPDA 264

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDS--ILCAALIDMYAKCGSIDLAMQVF 197
             +V +LS+ A LGA   G  V  Y++++     +   LC ALI+ +A+CGS+  A Q+F
Sbjct: 265 VTIVGVLSSAAHLGARGVGFDVEHYVRQRIPGFHTNVQLCNALINFHARCGSLPRAQQLF 324

Query: 198 HSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVE 257
                K + ++T+ I G  M+G+   A  LFE M S+GI PD+++ +A+ SACSH G  +
Sbjct: 325 DEMPRKSIVSWTALITGHGMHGNGDVAVSLFERMVSEGIRPDNVAMVALFSACSHAGLYD 384

Query: 258 KGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
           +G  YF +M  V+ ++P L+HY CMVDLLGRAG LEEA   I+SMPM  D  +WG LLGA
Sbjct: 385 EGRRYFSAMESVYKLRPTLEHYTCMVDLLGRAGRLEEARELISSMPMPADGAVWGALLGA 444

Query: 318 CRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAP 377
           C++H+N ++G+     +IE +  + G Y+L+SNIY +T + +    VR  MR+R +K+ P
Sbjct: 445 CKIHKNVDVGEEAFTRVIELEPKNVGYYVLMSNIYTDTGQLDCVARVRAMMRERGLKKEP 504

Query: 378 GCSLIELDGVVHEFLAGDRSHEKTQEIYQF--WEEIVKKIKNYGYNVETRSVMFDIEEEE 435
           GCS +E  G VH F+A D SH + + IY+     E++ K K+     E  +    +E+  
Sbjct: 505 GCSYVEHKGRVHLFMADDHSHPQARRIYELVIRLELMVKEKSGMRESEVAAAKGRMEKAA 564

Query: 436 KETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRK 495
            + ++G HSEKLA+AFGL+ T+ GS I ++KN+R+C DCHS +K+VS    R   +RD  
Sbjct: 565 AQPLVGIHSEKLAVAFGLLNTEAGSEIVVIKNLRVCGDCHSFLKVVSATTNRAFLVRDAS 624

Query: 496 HYHHFEDGSCSCLEYW 511
            +H F+ G CSC +YW
Sbjct: 625 RFHRFDGGVCSCKDYW 640



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 120/265 (45%), Gaps = 53/265 (20%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGR--VRDARWVFDESD--DLDVVSWNSMINGYVRNG 56
           +  +   A +  V N L+  Y+  G      AR VFDE      D+VSWN++++ + +NG
Sbjct: 181 LAARVGLATETSVANCLMSTYARGGAFGAALARRVFDEMPLASRDLVSWNAVLSAHAQNG 240

Query: 57  EILEGLKLFDKM--PQRNDVSWN--SILGGL----------------------------- 83
             ++ L+L+ +M  P+ + V  +  +I+G L                             
Sbjct: 241 LAVDALELYRRMRSPEGSGVEPDAVTIVGVLSSAAHLGARGVGFDVEHYVRQRIPGFHTN 300

Query: 84  -----------VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQS 132
                       R GS+  A ++F++MP++S+VSW  LI+G   +G    A++LF  M S
Sbjct: 301 VQLCNALINFHARCGSLPRAQQLFDEMPRKSIVSWTALITGHGMHGNGDVAVSLFERMVS 360

Query: 133 LDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQ---KKCIKLDSILCAALIDMYAKCGS 189
             + P++  +V+L SAC+  G  D G   +S ++   K    L+   C  ++D+  + G 
Sbjct: 361 EGIRPDNVAMVALFSACSHAGLYDEGRRYFSAMESVYKLRPTLEHYTC--MVDLLGRAGR 418

Query: 190 IDLAMQVFHSYGDKDVSAYTSAIFG 214
           ++ A ++  S       A   A+ G
Sbjct: 419 LEEARELISSMPMPADGAVWGALLG 443



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 128/274 (46%), Gaps = 19/274 (6%)

Query: 68  MPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSL------VSWVVLISGFAQNGRPK 121
           +P  +    +++L    R G +  A ++ ++MP  S        ++  +ISG A +  P 
Sbjct: 83  LPAADAYLLSALLTSYSRLGCLPLAHQLLDEMPLESTPHTTLRTAFNSVISGCALHALPV 142

Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
            + ALFR M++  +  ++  L++L+ A      L     V++   +  +  ++ +   L+
Sbjct: 143 ASFALFRRMRAAAVGFDAVTLLALVPAT----PLSVVPQVHALAARVGLATETSVANCLM 198

Query: 182 DMYAKCGSID--LAMQVFH--SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK--- 234
             YA+ G+    LA +VF       +D+ ++ + +   A NG +++A EL+  M+S    
Sbjct: 199 STYARGGAFGAALARRVFDEMPLASRDLVSWNAVLSAHAQNGLAVDALELYRRMRSPEGS 258

Query: 235 GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD-VHGIKPELDHYACMVDLLGRAGLLE 293
           G+ PD+++ + VLS+ +HLG    GF   H +   + G    +     +++   R G L 
Sbjct: 259 GVEPDAVTIVGVLSSAAHLGARGVGFDVEHYVRQRIPGFHTNVQLCNALINFHARCGSLP 318

Query: 294 EAENFIASMPMKPDNVIWGTLLGACRVHRNAEMG 327
            A+     MP K   V W  L+    +H N ++ 
Sbjct: 319 RAQQLFDEMPRK-SIVSWTALITGHGMHGNGDVA 351



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 82/168 (48%), Gaps = 12/168 (7%)

Query: 7   FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFD 66
           F  +V + N+LI F++ CG +  A+ +FDE     +VSW ++I G+  +G     + LF+
Sbjct: 297 FHTNVQLCNALINFHARCGSLPRAQQLFDEMPRKSIVSWTALITGHGMHGNGDVAVSLFE 356

Query: 67  KMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMP-----KRSLVSWVVLISGFAQN 117
           +M     + ++V+  ++       G  D+  R F+ M      + +L  +  ++    + 
Sbjct: 357 RMVSEGIRPDNVAMVALFSACSHAGLYDEGRRYFSAMESVYKLRPTLEHYTCMVDLLGRA 416

Query: 118 GRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
           GR +EA  L   + S+ +  + A+  +LL AC     +D G   ++ +
Sbjct: 417 GRLEEAREL---ISSMPMPADGAVWGALLGACKIHKNVDVGEEAFTRV 461


>gi|212720716|ref|NP_001132746.1| uncharacterized protein LOC100194233 [Zea mays]
 gi|194695290|gb|ACF81729.1| unknown [Zea mays]
          Length = 539

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 189/536 (35%), Positives = 292/536 (54%), Gaps = 39/536 (7%)

Query: 15  NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ---- 70
           N LI  Y   G +  AR +FDE    +V +WN+M+ G   +G   E L  F  M +    
Sbjct: 4   NILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQ 63

Query: 71  ----------------RNDVSWNSILGGLVRFGSVDDAC-------------------RV 95
                           R+ VS   +   +VR G   D C                     
Sbjct: 64  PDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAA 123

Query: 96  FNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGAL 155
              +P  ++VS    ISG  QNG  + AL  F  M+   +E N+   VS +++C+ L AL
Sbjct: 124 LRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAAL 183

Query: 156 DYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGL 215
             G  +++   K  +     +  +L+ MY++CG +  + +V   Y   D+   ++ I   
Sbjct: 184 AQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAY 243

Query: 216 AMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE 275
             +GH  +A  LF+ M + G  P+ ++++ +L ACSH G  ++G   F  M   +G++P 
Sbjct: 244 GFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQPS 303

Query: 276 LDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLI 335
           + HY C+VDLLGR+G L EAE+ I SMP++PD VIW TLL AC+  +  +M +RI   +I
Sbjct: 304 VKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMAERIAERVI 363

Query: 336 ESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGD 395
           E D +    Y+LLSNI   + + E+  +VR+TMR++ +++ PG S +EL G +H+F  GD
Sbjct: 364 ELDPHDSASYVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQIHQFCTGD 423

Query: 396 RSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLIC 455
            SH + +EI +  EE++ +I+  GY  +   V  D+E+EEKE  + +HSEKLA+AF  + 
Sbjct: 424 ESHSRQREIVECLEEMMTRIRQCGYAPDMSMVFHDMEDEEKEVSLAHHSEKLAIAFAFLS 483

Query: 456 TKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
              G  IR++KN+R+C DCH A+KL+SKV  R+I +RD   +HHF+DG CSC +YW
Sbjct: 484 LPEGVPIRVMKNLRVCDDCHVAIKLMSKVIGREIVVRDVSRFHHFKDGKCSCGDYW 539



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 117/223 (52%), Gaps = 1/223 (0%)

Query: 74  VSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL 133
           +SWN ++GG V+ G ++ A ++F++MP R++ +W  +++G   +G  +E+L  F  M+  
Sbjct: 1   MSWNILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRRE 60

Query: 134 DLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLA 193
            ++P+   L SL   CA L  +  G  V++Y+ +  +  D  + ++L  MY +CG +   
Sbjct: 61  GMQPDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDG 120

Query: 194 MQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL 253
                +    ++ +  + I G   NG +  A E F  M+  G+  +++++++ +++CS L
Sbjct: 121 EAALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDL 180

Query: 254 GWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAE 296
             + +G    H++    G+   +     +V +  R G L ++E
Sbjct: 181 AALAQG-QQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSE 222



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 16/182 (8%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + +K      V V  SL+  YS CG + D+  V  E    D+V  ++MI+ Y  +G   +
Sbjct: 192 LAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGFHGHGQK 251

Query: 61  GLKLFDKM----PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLI 111
            + LF +M     + N+V++ ++L      G  D+    F  M K      S+  +  ++
Sbjct: 252 AVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQPSVKHYTCIV 311

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK 171
               ++G   EA  L   + S+ ++P+  I  +LLSAC      D        I ++ I+
Sbjct: 312 DLLGRSGCLNEAEDL---ILSMPVQPDGVIWKTLLSACKTQKKFDMAE----RIAERVIE 364

Query: 172 LD 173
           LD
Sbjct: 365 LD 366


>gi|414872095|tpg|DAA50652.1| TPA: hypothetical protein ZEAMMB73_776700 [Zea mays]
          Length = 647

 Score =  358 bits (920), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 190/541 (35%), Positives = 294/541 (54%), Gaps = 39/541 (7%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           +V   N LI  Y   G +  AR +FDE    +V +WN+M+ G   +G   E L  F  M 
Sbjct: 107 NVMSWNILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMR 166

Query: 70  Q--------------------RNDVSWNSILGGLVRFGSVDDAC---------------- 93
           +                    R+ VS   +   +VR G   D C                
Sbjct: 167 REGMQPDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLR 226

Query: 94  ---RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
                   +P  ++VS    ISG  QNG  + AL  F  M+   +E N+   VS +++C+
Sbjct: 227 DGEAALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCS 286

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
            L AL  G  +++   K  +     +  +L+ MY++CG +  + +V   Y   D+   ++
Sbjct: 287 DLAALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSA 346

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I     +GH  +A  LF+ M + G  P+ ++++ +L ACSH G  ++G   F  M   +
Sbjct: 347 MISAYGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTY 406

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
           G++P + HY C+VDLLGR+G L EAE+ I SMP++PD VIW TLL AC+  +  +M +RI
Sbjct: 407 GLQPSVKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMAERI 466

Query: 331 GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHE 390
              +IE D +    Y+LLSNI   + + E+  +VR+TMR++ +++ PG S +EL G +H+
Sbjct: 467 AERVIELDPHDSASYVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQIHQ 526

Query: 391 FLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALA 450
           F  GD SH + +EI +  EE++ +I+  GY  +   V  D+E+EEKE  + +HSEKLA+A
Sbjct: 527 FCTGDESHSRQREIVECLEEMMTRIRQCGYAPDMSMVFHDMEDEEKEVSLAHHSEKLAIA 586

Query: 451 FGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEY 510
           F  +    G  IR++KN+R+C DCH A+KL+SKV  R+I +RD   +HHF+DG CSC +Y
Sbjct: 587 FAFLSLPEGVPIRVMKNLRVCDDCHVAIKLMSKVIGREIVVRDVSRFHHFKDGKCSCGDY 646

Query: 511 W 511
           W
Sbjct: 647 W 647



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 134/256 (52%), Gaps = 1/256 (0%)

Query: 41  DVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMP 100
           D  + N ++  Y   G+      LF+++P+RN +SWN ++GG V+ G ++ A ++F++MP
Sbjct: 76  DRFTANHLLLAYADLGDFPTARGLFERIPKRNVMSWNILIGGYVKNGDLETARKLFDEMP 135

Query: 101 KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNW 160
            R++ +W  +++G   +G  +E+L  F  M+   ++P+   L SL   CA L  +  G  
Sbjct: 136 ARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPDEYGLGSLFRCCAGLRDVVSGRQ 195

Query: 161 VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGH 220
           V++Y+ +  +  D  + ++L  MY +CG +        +    ++ +  + I G   NG 
Sbjct: 196 VHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALRALPSLNIVSCNTTISGRTQNGD 255

Query: 221 SIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA 280
           +  A E F  M+  G+  +++++++ +++CS L  + +G    H++    G+   +    
Sbjct: 256 AEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQG-QQIHALAIKTGVDKVVPVMT 314

Query: 281 CMVDLLGRAGLLEEAE 296
            +V +  R G L ++E
Sbjct: 315 SLVHMYSRCGCLGDSE 330



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 16/182 (8%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + +K      V V  SL+  YS CG + D+  V  E    D+V  ++MI+ Y  +G   +
Sbjct: 300 LAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGFHGHGQK 359

Query: 61  GLKLFDKM----PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLI 111
            + LF +M     + N+V++ ++L      G  D+    F  M K      S+  +  ++
Sbjct: 360 AVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQPSVKHYTCIV 419

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK 171
               ++G   EA  L   + S+ ++P+  I  +LLSAC      D        I ++ I+
Sbjct: 420 DLLGRSGCLNEAEDL---ILSMPVQPDGVIWKTLLSACKTQKKFDMAE----RIAERVIE 472

Query: 172 LD 173
           LD
Sbjct: 473 LD 474


>gi|224116778|ref|XP_002331875.1| predicted protein [Populus trichocarpa]
 gi|222875393|gb|EEF12524.1| predicted protein [Populus trichocarpa]
          Length = 675

 Score =  358 bits (920), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 189/543 (34%), Positives = 309/543 (56%), Gaps = 43/543 (7%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DV   N+++  Y   GRV +   +F+E    DV+SW SMI G   NG+  E L +F KM 
Sbjct: 135 DVAAWNAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKML 194

Query: 70  QR-----------------NDVSWN---SILGGLVRFG-------------------SVD 90
           +                  N V +N    + G +V+ G                    ++
Sbjct: 195 RSGVEPTWSTFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYANCMKIE 254

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
            A ++FN+   +++V W  L++ +  N + ++AL +F +M  +   PN +     L AC 
Sbjct: 255 HAHKIFNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTFSITLKACC 314

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
            L ALD G  +++   K  ++ D  +  +L+ MY +CG+++ A+ VF +  +KD+ ++ S
Sbjct: 315 GLEALDKGKEIHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNINEKDIVSWNS 374

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG--FYYFHSMFD 268
            I G A +G  + A   F  M  +G+ P+ I++  +LSACS  G + KG  F+ + S + 
Sbjct: 375 IIVGSAQHGFGLWALIFFNQMIRRGVDPNEITFTGLLSACSRSGMLLKGRCFFEYISRYK 434

Query: 269 VHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQ 328
            + ++P+  HYACMVD+LGR G L+EAE  +  MP+K +++IW  LL ACRVH N E+ +
Sbjct: 435 SNVLRPQ--HYACMVDILGRCGKLDEAEELVRYMPVKANSMIWLALLSACRVHSNLEVAE 492

Query: 329 RIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVV 388
           R    +++ + N    Y+LLSNIY    +  +   +R  M++  + + PG S + L G  
Sbjct: 493 RAAKHILDLEPNCSSAYVLLSNIYASAGRWADVSRMRVKMKQGGLVKQPGSSWVVLRGKK 552

Query: 389 HEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLA 448
           HEFL+ DRSH  ++ IY+  + + KK+K +GY  + +  + D+E+E+KE ++ +HSE+LA
Sbjct: 553 HEFLSADRSHPLSERIYEKLDWLGKKLKEFGYVPDQKFALHDVEDEQKEEMLSFHSERLA 612

Query: 449 LAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCL 508
           +AFGL+ T  GS I ++KN+R+C DCHS +KL+SK+  RKI +RD   +HHF++G CSC 
Sbjct: 613 IAFGLVSTVEGSTITVMKNLRVCGDCHSVIKLMSKIVGRKIVVRDSGRFHHFKNGICSCS 672

Query: 509 EYW 511
           +YW
Sbjct: 673 DYW 675



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 132/250 (52%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           DV   NS+I+    CG +  A  +FDE  + +V+SW +M+NGY++ G +    +LF  M 
Sbjct: 73  DVVSWNSMIKGCLDCGNLGMATRLFDEMPEKNVISWTTMVNGYLKFGRVELAQRLFLDMH 132

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE 129
            ++  +WN+++ G    G V++  R+F +MP R ++SW  +I G   NG+ +EAL +F++
Sbjct: 133 VKDVAAWNAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKK 192

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
           M    +EP  +    +LSACA     + G  V+ ++ K        +  +LI  YA C  
Sbjct: 193 MLRSGVEPTWSTFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYANCMK 252

Query: 190 IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
           I+ A ++F+    K+V  +T+ +     N    +A  +F +M   G  P+  ++   L A
Sbjct: 253 IEHAHKIFNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTFSITLKA 312

Query: 250 CSHLGWVEKG 259
           C  L  ++KG
Sbjct: 313 CCGLEALDKG 322



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 105/235 (44%), Gaps = 40/235 (17%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           VVK    +  F+  SLI FY+ C ++  A  +F+E+   +VV W +++  YV N +  + 
Sbjct: 228 VVKLGCFFHEFISVSLITFYANCMKIEHAHKIFNETLTKNVVKWTALLTAYVWNNKHQDA 287

Query: 62  LKLFDKM------PQRNDVS---------------------------------WNSILGG 82
           L++F  M      P ++  S                                  NS++  
Sbjct: 288 LRVFGDMTKMGALPNQSTFSITLKACCGLEALDKGKEIHTMAIKLGLETDVFVGNSLVVM 347

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
               G+V+ A  VF  + ++ +VSW  +I G AQ+G    AL  F +M    ++PN    
Sbjct: 348 YTECGNVNSAVAVFRNINEKDIVSWNSIIVGSAQHGFGLWALIFFNQMIRRGVDPNEITF 407

Query: 143 VSLLSACAQLGALDYGNWVYSYIQK-KCIKLDSILCAALIDMYAKCGSIDLAMQV 196
             LLSAC++ G L  G   + YI + K   L     A ++D+  +CG +D A ++
Sbjct: 408 TGLLSACSRSGMLLKGRCFFEYISRYKSNVLRPQHYACMVDILGRCGKLDEAEEL 462



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 105/211 (49%), Gaps = 8/211 (3%)

Query: 42  VVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPK 101
            +S+ + +  +++N  + +   +FDK+P  N   +  ++ G  R   + DA ++F++M  
Sbjct: 12  TLSYTTSLANHLKNQRLDQARLIFDKIPSPNLHLYTKMIAGYTRNDRLCDALKLFDRMSV 71

Query: 102 RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161
           R +VSW  +I G    G    A  LF EM     E N     ++++   + G ++    +
Sbjct: 72  RDVVSWNSMIKGCLDCGNLGMATRLFDEMP----EKNVISWTTMVNGYLKFGRVELAQRL 127

Query: 162 YSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHS 221
           +  +  K    D     A++  Y + G ++  +++F     +DV ++TS I GL +NG S
Sbjct: 128 FLDMHVK----DVAAWNAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKS 183

Query: 222 IEAFELFENMKSKGISPDSISYIAVLSACSH 252
            EA  +F+ M   G+ P   ++  VLSAC++
Sbjct: 184 EEALFVFKKMLRSGVEPTWSTFACVLSACAN 214



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 81/158 (51%), Gaps = 12/158 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           M +K     DVFV NSL+  Y+ CG V  A  VF   ++ D+VSWNS+I G  ++G  L 
Sbjct: 328 MAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNINEKDIVSWNSIIVGSAQHGFGLW 387

Query: 61  GLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPK-RSLV----SWVVLI 111
            L  F++M +R    N++++  +L    R G +      F  + + +S V     +  ++
Sbjct: 388 ALIFFNQMIRRGVDPNEITFTGLLSACSRSGMLLKGRCFFEYISRYKSNVLRPQHYACMV 447

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
               + G+  EA  L R M    ++ NS I ++LLSAC
Sbjct: 448 DILGRCGKLDEAEELVRYMP---VKANSMIWLALLSAC 482


>gi|302768267|ref|XP_002967553.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
 gi|300164291|gb|EFJ30900.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
          Length = 670

 Score =  358 bits (920), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 192/503 (38%), Positives = 297/503 (59%), Gaps = 32/503 (6%)

Query: 10  DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           +V V  ++I  Y  CGR+ DAR  F+E      + W                        
Sbjct: 199 NVVVGTAVISMYGKCGRLDDARAAFEE------LQW------------------------ 228

Query: 70  QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE 129
            +N V+WN+++      G   +A  +F +M     V W  +I+ +AQ+GR K+AL L+R 
Sbjct: 229 -KNSVTWNAMMTNYKLDGRDREALELFREMHDADSVCWNAMIAAYAQHGRGKQALDLYRS 287

Query: 130 MQ-SLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCG 188
           M  + DL P     V+++  CA+L AL  G  +++ ++      + ++  AL+ MY KCG
Sbjct: 288 MHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCG 347

Query: 189 SIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248
            +D A+ VFHS   KD  ++ + I   A +GHS +A  L++ M  +G+ P  ++++ +LS
Sbjct: 348 CLDEALDVFHSMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLS 407

Query: 249 ACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDN 308
           ACSH G V  G  YF+ M D H IKP + H+ C++DLLGR G L EAE  + SMP++ + 
Sbjct: 408 ACSHGGLVADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANA 467

Query: 309 VIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTM 368
           V W +LLGAC+ H + + G R  + +++      G Y+LLSNIY    + ++ E++RK M
Sbjct: 468 VQWMSLLGACKTHGDLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRKIM 527

Query: 369 RKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVM 428
             R +K++PG S IE+  VVHEF++GD SH + +EIY    ++V+++K  GY  +T SV 
Sbjct: 528 AARGVKKSPGKSWIEIGDVVHEFVSGDSSHPQGEEIYVELGKMVEEMKGLGYVPDTSSVF 587

Query: 429 FDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRK 488
            D+EEEEKE ++  HSEKLA+ +G +     S++RIVKN+R+C DCH+A K +S++  RK
Sbjct: 588 HDLEEEEKEDLLVCHSEKLAIVYGNMVVPGKSMLRIVKNLRVCLDCHTATKFMSRITGRK 647

Query: 489 ISIRDRKHYHHFEDGSCSCLEYW 511
           I +RD   +H FE+GSCSC +YW
Sbjct: 648 IVVRDAARFHLFENGSCSCRDYW 670



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 116/276 (42%), Gaps = 42/276 (15%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
           G +  A  +F  MP R++ +W V ++ F+ NG   EAL  FR M      P+      +L
Sbjct: 111 GRLPYARELFESMPSRNVHTWTVAMAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVIL 170

Query: 147 --SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
              A     A+D G  ++ Y +   +  + ++  A+I MY KCG +D A   F     K+
Sbjct: 171 AAIAQMGAAAIDQGREIHRYARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKN 230

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
              + + +    ++G   EA ELF  M       DS+ + A+++A +  G  ++    + 
Sbjct: 231 SVTWNAMMTNYKLDGRDREALELFREMHDA----DSVCWNAMIAAYAQHGRGKQALDLYR 286

Query: 265 SMFDVHGIKPELDHYACMVD-----------------------------------LLGRA 289
           SM D   + P+   +  ++D                                   + G+ 
Sbjct: 287 SMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKC 346

Query: 290 GLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAE 325
           G L+EA +   SM +K D + W T++ +   H +++
Sbjct: 347 GCLDEALDVFHSMKLK-DEISWNTIISSYAYHGHSD 381



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 84/190 (44%), Gaps = 6/190 (3%)

Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQ--KKCIKLDSILCAALIDMYAKC 187
           ++S +LE +     +L+  C    A+     ++S+I            L   LI+MY KC
Sbjct: 51  LESRELELDPVGYAALIRRCGAANAISAARRLHSHILSLPHSNSQPPFLANLLIEMYGKC 110

Query: 188 GSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVL 247
           G +  A ++F S   ++V  +T A+   + NG   EA   F  M   G  PD +++  +L
Sbjct: 111 GRLPYARELFESMPSRNVHTWTVAMAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVIL 170

Query: 248 --SACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMK 305
              A      +++G    H    + G+ P +     ++ + G+ G L++A      +  K
Sbjct: 171 AAIAQMGAAAIDQG-REIHRYARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWK 229

Query: 306 PDNVIWGTLL 315
            ++V W  ++
Sbjct: 230 -NSVTWNAMM 238



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 12/166 (7%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V   +F  ++ V N+L+  Y  CG + +A  VF      D +SWN++I+ Y  +G   + 
Sbjct: 324 VRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTIISSYAYHGHSDQA 383

Query: 62  LKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMP-----KRSLVSWVVLIS 112
           L L+ +M     +  +V++  +L      G V D    F +M      K S+  +  +I 
Sbjct: 384 LLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLDYFYRMQDDHRIKPSVPHFGCIID 443

Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
              + GR  EA  +   ++S+ ++ N+   +SLL AC   G L  G
Sbjct: 444 LLGRGGRLAEAELV---LKSMPIQANAVQWMSLLGACKTHGDLKRG 486


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  358 bits (920), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 203/567 (35%), Positives = 304/567 (53%), Gaps = 59/567 (10%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDD----LDVVSWNSMINGYVRNGE 57
           V  N    DV   N+++  YS  GR  DA  +F++  +    +DVV+W++ I+GY + G 
Sbjct: 286 VFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGL 345

Query: 58  ILEGLKLFDKM----PQRNDVSWNSILGGLVRFGSV----------------------DD 91
             E L +  +M     + N+V+  S+L G    G++                       D
Sbjct: 346 GYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGD 405

Query: 92  ACRVFNQM---------------------PK-RSLVSWVVLISGFAQNGRPKEALALFRE 129
              V NQ+                     PK R +V+W V+I G++Q+G   +AL L  E
Sbjct: 406 ENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSE 465

Query: 130 MQSLDLE--PNSAILVSLLSACAQLGALDYGNWVYSYI---QKKCIKLDSILCAALIDMY 184
           M   D +  PN+  +   L ACA L AL  G  +++Y    Q+  + L    C  LIDMY
Sbjct: 466 MFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNC--LIDMY 523

Query: 185 AKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYI 244
           AKCG I  A  VF +  +K+   +TS + G  M+G+  EA  +FE M+  G   D ++ +
Sbjct: 524 AKCGDIGDARLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLL 583

Query: 245 AVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPM 304
            VL ACSH G +++G  YF+ M    G+ P  +HYAC+VDLLGRAG L  A   I  MPM
Sbjct: 584 VVLYACSHSGMIDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPM 643

Query: 305 KPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEV 364
           +P  V+W  LL  CR+H   E+G+     + E   N+DG Y LLSN+Y    + ++   +
Sbjct: 644 EPPPVVWVALLSCCRIHGKVELGEYAAKKITELASNNDGSYTLLSNMYANAGRWKDVTRI 703

Query: 365 RKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVET 424
           R  MR + IK+ PGCS +E       F  GD++H   +EIYQ   + +++IK+ GY  ET
Sbjct: 704 RSLMRHKGIKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLSDHMQRIKDIGYVPET 763

Query: 425 RSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKV 484
              + D+++EEK+ ++  HSEKLALA+G++ T  G+ IRI KN+R+C DCH+A   +S++
Sbjct: 764 GFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRI 823

Query: 485 FKRKISIRDRKHYHHFEDGSCSCLEYW 511
              +I +RD   +HHF++G CSC  YW
Sbjct: 824 IDHEIILRDSSRFHHFKNGLCSCKGYW 850



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 111/408 (27%), Positives = 182/408 (44%), Gaps = 89/408 (21%)

Query: 5   NSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKL 64
             F  +VFV N+L+  YS CG + DAR VFDE    DVVSWNS+I  Y + G+    L++
Sbjct: 156 TGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEM 215

Query: 65  FDKMPQ----------------------------------------RNDVSWNSILGGLV 84
           F KM                                          +N    N ++    
Sbjct: 216 FSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYA 275

Query: 85  RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQ------------- 131
           +FG +D+A  VF+ MP + +VSW  +++G++Q GR ++A+ LF +MQ             
Sbjct: 276 KFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSA 335

Query: 132 ----------------------SLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC 169
                                 S  ++PN   L+S+LS CA +GAL +G  ++ Y  K  
Sbjct: 336 AISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYP 395

Query: 170 IKL-------DSILCAALIDMYAKCGSIDLAMQVFHSYGDK--DVSAYTSAIFGLAMNGH 220
           + L       ++++   LIDMYAKC  +D+A  +F S   K  DV  +T  I G + +G 
Sbjct: 396 MDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGD 455

Query: 221 SIEAFELFENMKSKG--ISPDSISYIAVLSACSHLGWVEKG-FYYFHSMFDVHGIKPELD 277
           + +A EL   M  +     P++ +    L AC+ L  +  G   + +++ +     P L 
Sbjct: 456 ANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVP-LF 514

Query: 278 HYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAE 325
              C++D+  + G + +A     +M M+ + V W +L+    +H   E
Sbjct: 515 VSNCLIDMYAKCGDIGDARLVFDNM-MEKNEVTWTSLMTGYGMHGYGE 561



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 111/242 (45%), Gaps = 5/242 (2%)

Query: 79  ILGGLVRFGSVDDACRVFNQMPKR--SLVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136
           ++   +  G +  A  +  + P     +  W  LI  +  NGR  + L+ F  M SL   
Sbjct: 65  LISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWT 124

Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
           P++     +  AC ++ ++  G+  ++  +      +  +  AL+ MY++CGS+  A +V
Sbjct: 125 PDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKV 184

Query: 197 FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK-GISPDSISYIAVLSACSHLGW 255
           F      DV ++ S I   A  G    A E+F  M ++ G  PD I+ + VL  C+ +G 
Sbjct: 185 FDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGT 244

Query: 256 VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
              G   FH       +   +    C+VD+  + G+++EA    ++MP+K D V W  ++
Sbjct: 245 RSLG-KQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVK-DVVSWNAMV 302

Query: 316 GA 317
             
Sbjct: 303 AG 304


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  358 bits (920), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 190/551 (34%), Positives = 312/551 (56%), Gaps = 43/551 (7%)

Query: 3   VKNSFAYD-VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRN------ 55
           +K  F ++   V N+ +  Y+ CG +  A  VF       V SWN++I GY ++      
Sbjct: 419 LKQEFVHNNELVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIGGYSQSSDPRLS 478

Query: 56  ----------------------------------GEILEGLKLFDKMPQRNDVSWNSILG 81
                                             G+ + GL + +++ +R+   + S+L 
Sbjct: 479 LDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRNRL-ERDSFVYISLLS 537

Query: 82  GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
             +  G +  A  +F+ M  ++LVSW  +++G+ QNG P+ AL+LFR+M    ++P    
Sbjct: 538 LYIHCGELSTAHVLFDAMEDKTLVSWNTMVNGYLQNGFPERALSLFRQMVLYGVQPCEIS 597

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
           ++S+  AC+ L +L  G   + Y  K  ++ ++ +  ++IDMYAK GS+  + +VF+   
Sbjct: 598 MMSVFGACSLLPSLRLGREAHGYALKCLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLK 657

Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
           ++ V+++ + + G  ++G + EA +LFE M+  G  PD ++++ VL+AC+H G V +G  
Sbjct: 658 ERSVASWNAMVMGYGIHGRAKEAIKLFEEMQRTGHCPDELTFLGVLTACNHSGLVHEGLT 717

Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS-MPMKPDNVIWGTLLGACRV 320
           Y   M  + G+ P L HYAC++D+L RAG L+EA       M  +P   IW  LL +CR+
Sbjct: 718 YLDQMKTLFGMNPTLKHYACVIDMLVRAGKLDEALKIATEEMSEEPGVGIWNFLLSSCRI 777

Query: 321 HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS 380
           H+N EMG++I   L  S+      Y+LLSN+Y  + K +   +VR+ M++  +++  GCS
Sbjct: 778 HKNLEMGEKIAAKLFVSEPEKPENYVLLSNLYAGSGKWDEVRKVRQRMKEMSLRKDAGCS 837

Query: 381 LIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVI 440
            IEL+G V  F+AG+ S +  +EI   W  + ++I   GY  +T SV  D+ EEEK   +
Sbjct: 838 WIELNGKVFSFVAGESSLDGFEEIKSLWSVLEREIGKMGYRPDTSSVQHDLSEEEKTEQL 897

Query: 441 GYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF 500
             HSEKLA+ +GLI T  G+ +R+ KN+RIC DCH+A KL+SKV +R+I +RD K +HHF
Sbjct: 898 RGHSEKLAITYGLIRTSEGTTLRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHF 957

Query: 501 EDGSCSCLEYW 511
           ++G CSC +YW
Sbjct: 958 KNGFCSCGDYW 968



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 162/367 (44%), Gaps = 60/367 (16%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           +VVK     DVFV N+L+ FY   G V DA  VF    + ++VSWNSMI  +  NG   E
Sbjct: 209 LVVKTRLVEDVFVSNALVSFYGTNGSVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEE 268

Query: 61  GLKLFDKMPQRND-------------------------------------------VSWN 77
              L  +M +++D                                           V  N
Sbjct: 269 CFLLLGQMMEKDDEIAFTPDVATLATVLPVCARDREIGVGKGVHGLAMKLSLDKEVVVNN 328

Query: 78  SILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL--DL 135
           +++    + G ++DA  +F     +++VSW  ++ GF+  G   +   L R+M +   DL
Sbjct: 329 ALMDMYSKCGCINDAQVIFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDL 388

Query: 136 EPNSAILVSLLSACAQLGALDYGNWVYSY-IQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
             +   +++ +  C +   L     ++ Y ++++ +  + ++  A +  YAKCGS+  A 
Sbjct: 389 RADEVTILNAVPVCFEESVLPNLKELHCYSLKQEFVHNNELVANAFVASYAKCGSLSYAH 448

Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
           +VF S   K V+++ + I G + +     + + +  MKS G+ PD  +  ++LSACS + 
Sbjct: 449 RVFCSIRSKTVNSWNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIK 508

Query: 255 WVEKGFYYFHSMFDVHG--IKPELDH----YACMVDLLGRAGLLEEAENFIASMPMKPDN 308
            ++ G        +VHG  I+  L+     Y  ++ L    G L  A     +M  K   
Sbjct: 509 SLKLG-------KEVHGLIIRNRLERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKT-L 560

Query: 309 VIWGTLL 315
           V W T++
Sbjct: 561 VSWNTMV 567



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 127/280 (45%), Gaps = 46/280 (16%)

Query: 17  LIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSW 76
           +I  YS+CG   D+R VFD     ++  WN++I+ Y RN      L++F KM   + +  
Sbjct: 123 VITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYSRNELYHNVLEMFVKMITESGLLP 182

Query: 77  NS------------------------------------ILGGLVRF----GSVDDACRVF 96
           ++                                    +   LV F    GSV DA RVF
Sbjct: 183 DNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTNGSVSDALRVF 242

Query: 97  NQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE----PNSAILVSLLSACAQL 152
             MP+R+LVSW  +I  F+ NG  +E   L  +M   D E    P+ A L ++L  CA+ 
Sbjct: 243 KIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATVLPVCARD 302

Query: 153 GALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAI 212
             +  G  V+    K  +  + ++  AL+DMY+KCG I+ A  +F    +K+V ++ + +
Sbjct: 303 REIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVIFKLNNNKNVVSWNTMV 362

Query: 213 FGLAMNGHSIEAFELFENMKSKG--ISPDSISYIAVLSAC 250
            G +  G   + F+L   M + G  +  D ++ +  +  C
Sbjct: 363 GGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVC 402



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 110/237 (46%), Gaps = 42/237 (17%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++++N    D FV  SL+  Y  CG +  A  +FD  +D  +VSWN+M+NGY++NG    
Sbjct: 519 LIIRNRLERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKTLVSWNTMVNGYLQNGFPER 578

Query: 61  GLKLFDKM----PQRNDVSWNSILGGL--------------------------------- 83
            L LF +M     Q  ++S  S+ G                                   
Sbjct: 579 ALSLFRQMVLYGVQPCEISMMSVFGACSLLPSLRLGREAHGYALKCLLEDNAFIACSVID 638

Query: 84  --VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
              + GSV ++ +VFN + +RS+ SW  ++ G+  +GR KEA+ LF EMQ     P+   
Sbjct: 639 MYAKNGSVMESFKVFNGLKERSVASWNAMVMGYGIHGRAKEAIKLFEEMQRTGHCPDELT 698

Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSIL--CAALIDMYAKCGSIDLAMQV 196
            + +L+AC   G +  G   Y    K    ++  L   A +IDM  + G +D A+++
Sbjct: 699 FLGVLTACNHSGLVHEG-LTYLDQMKTLFGMNPTLKHYACVIDMLVRAGKLDEALKI 754



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 113/245 (46%), Gaps = 25/245 (10%)

Query: 87  GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM-QSLDLEPNSAILVSL 145
           GS DD+  VF+ + K++L  W  +IS +++N      L +F +M     L P++     +
Sbjct: 131 GSPDDSRSVFDALRKKNLFQWNAVISSYSRNELYHNVLEMFVKMITESGLLPDNFTFPCV 190

Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
           + ACA +  +  G  V+  + K  +  D  +  AL+  Y   GS+  A++VF    ++++
Sbjct: 191 VKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTNGSVSDALRVFKIMPERNL 250

Query: 206 SAYTSAIFGLAMNGHSIEAFELFENMKSK----GISPDSISYIAVLSACSH---LGWVEK 258
            ++ S I   + NG S E F L   M  K      +PD  +   VL  C+    +G V K
Sbjct: 251 VSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATVLPVCARDREIG-VGK 309

Query: 259 GFYYFHSMFDVHGI--KPELDHYA----CMVDLLGRAGLLEEAENFIASMPMKPDNVIWG 312
           G         VHG+  K  LD        ++D+  + G + +A+  I  +    + V W 
Sbjct: 310 G---------VHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQ-VIFKLNNNKNVVSWN 359

Query: 313 TLLGA 317
           T++G 
Sbjct: 360 TMVGG 364



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 98/222 (44%), Gaps = 27/222 (12%)

Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSA---------ILVSLLSACAQLGALDYGNWV 161
           +SG  + G P + +   + ++  D E  S+          L  LL A  +   +  G  +
Sbjct: 46  VSGLCETGNPPQGV--LQVIEEFDREEKSSSDAFLLLREALGLLLQASGRRKDIQLGRKI 103

Query: 162 YSYIQKKC-IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGH 220
           +  + +   +  D +LC  +I MY+ CGS D +  VF +   K++  + + I   + N  
Sbjct: 104 HQLVSESARLSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYSRNEL 163

Query: 221 SIEAFELFENMKSK-GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG--IKPEL- 276
                E+F  M ++ G+ PD+ ++  V+ AC+ +  V+ G         VHG  +K  L 
Sbjct: 164 YHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVGLA-------VHGLVVKTRLV 216

Query: 277 -DHYA--CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
            D +    +V   G  G + +A      MP + + V W +++
Sbjct: 217 EDVFVSNALVSFYGTNGSVSDALRVFKIMPER-NLVSWNSMI 257


>gi|449480927|ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  358 bits (919), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 203/548 (37%), Positives = 312/548 (56%), Gaps = 47/548 (8%)

Query: 11  VFVKNSLIQFYSVCGRVRDARWVFD-ESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
           V V N+LI  YS  G +++AR +F   S+D D VSWNSM+  Y+++ E  + L+L+ +M 
Sbjct: 173 VSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMT 232

Query: 70  QRNDV--------------SWNSILGGL----------------VRFGSVD--------- 90
            R  +              +   +LGGL                V  G +D         
Sbjct: 233 VRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCM 292

Query: 91  -DACRVFNQMPKRSLVSWVVLISGFA-QNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148
            D  +VF+++    LV W  +ISG++       EAL  FR++Q +   P+   LV ++SA
Sbjct: 293 LDCRKVFDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISA 352

Query: 149 CAQLGALDYGNWVYSYIQKKCIKLDSI-LCAALIDMYAKCGSIDLAMQVFHSYGDKDVSA 207
           C+ + +   G  V+    K  I  + I +  ALI MY+KCG++  A  +F +  + +  +
Sbjct: 353 CSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVS 412

Query: 208 YTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMF 267
           Y S I G A +G   ++  LF+ M     +P +I++I+VL+AC+H G VE G  YF+ M 
Sbjct: 413 YNSMIAGYAQHGMGFQSLHLFQRMLEMDFTPTNITFISVLAACAHTGRVEDGKIYFNMMK 472

Query: 268 DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMG 327
              GI+PE  H++CM+DLLGRAG L EAE  I ++P  P    W  LLGACR+H N E+ 
Sbjct: 473 QKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFXWSALLGACRIHGNVELA 532

Query: 328 QRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGV 387
            +  N L++ D  +   Y++L+NIY +  + ++A  VRK MR R +K+ PGCS IE++  
Sbjct: 533 IKAANRLLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVNRR 592

Query: 388 VHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFD----IEEEEKETVIGYH 443
           +H F+A D  H   ++I ++ EE+++KIK  GY  E RS        + + E+E  +G+H
Sbjct: 593 IHIFVAEDTFHPMIKKIQEYLEEMMRKIKKVGYTPEVRSASVGGDDRVWQREEELRLGHH 652

Query: 444 SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
           SEKLA++FGL+ T+ G  I + KN+RIC DCH+A+K +S+V KR+I++RD   +H F+DG
Sbjct: 653 SEKLAVSFGLMSTREGEPILVFKNLRICVDCHNAIKYISEVVKREITVRDSHRFHCFKDG 712

Query: 504 SCSCLEYW 511
            CSC  YW
Sbjct: 713 QCSCGGYW 720



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 114/241 (47%), Gaps = 43/241 (17%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGR-VRDARWVFDESDDLDVVSWNSMINGY-------- 52
           ++K+ +  +  V + LI  YS CG  + D R VFDE  + D+V WN+MI+GY        
Sbjct: 266 LIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDLSD 325

Query: 53  ---------------------------------VRNGEILEGLKLFDKMPQRNDVSWNSI 79
                                               G  + GL L   +P       N++
Sbjct: 326 EALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNAL 385

Query: 80  LGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS 139
           +    + G++ DA  +F+ MP+ + VS+  +I+G+AQ+G   ++L LF+ M  +D  P +
Sbjct: 386 IAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMDFTPTN 445

Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKC-IKLDSILCAALIDMYAKCGSIDLAMQVFH 198
              +S+L+ACA  G ++ G   ++ +++K  I+ ++   + +ID+  + G +  A ++  
Sbjct: 446 ITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIE 505

Query: 199 S 199
           +
Sbjct: 506 T 506



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 140/333 (42%), Gaps = 65/333 (19%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           + +K+      ++ N  +  YS C R+  AR VFD + D +V S+N              
Sbjct: 33  LYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTHDCNVFSFN-------------- 78

Query: 61  GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
                            +++    +   V+ A ++F++MP+   VS+  LI+ +A+ G  
Sbjct: 79  -----------------TLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDT 121

Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACA-------QLGALDYGNWVYSYIQKKCIKLD 173
           + A  LF EM+   L+ +   L  +++AC        QL AL     + SY+        
Sbjct: 122 QPAFQLFLEMREAFLDMDGFTLSGIITACGINVGLIRQLHALSVVTGLDSYVS------- 174

Query: 174 SILCAALIDMYAKCGSIDLAMQVFHSYG-DKDVSAYTSAIFGLAMNGHSIEAFELFENMK 232
             +  ALI  Y+K G +  A ++FH    D+D  ++ S +     +    +A EL+  M 
Sbjct: 175 --VGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMT 232

Query: 233 SKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAG-- 290
            +G+  D  +  +VL+A +++  +  G   FH+     G        + ++DL  + G  
Sbjct: 233 VRGLIVDIFTLASVLTAFTNVQDLLGGL-QFHAKLIKSGYHQNSHVGSGLIDLYSKCGGC 291

Query: 291 ------LLEEAENFIASMPMKPDNVIWGTLLGA 317
                 + +E  N        PD V+W T++  
Sbjct: 292 MLDCRKVFDEISN--------PDLVLWNTMISG 316



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 79/210 (37%), Gaps = 36/210 (17%)

Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
            L  C     L  G  +++   K  +   + L    + +Y+KC  +  A +VF    D +
Sbjct: 14  FLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTHDCN 73

Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
           V ++ + I   A   +   A +LF+ M      PDS+SY  +++A +  G  +  F  F 
Sbjct: 74  VFSFNTLISAYAKESYVEVAHQLFDEMP----QPDSVSYNTLIAAYARRGDTQPAFQLFL 129

Query: 265 SM---------FDVHGIKPE-------------------LDHYACMVDLL----GRAGLL 292
            M         F + GI                      LD Y  + + L     + G L
Sbjct: 130 EMREAFLDMDGFTLSGIITACGINVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFL 189

Query: 293 EEAENFIASMPMKPDNVIWGTLLGACRVHR 322
           +EA      +    D V W +++ A   HR
Sbjct: 190 KEARRIFHWLSEDRDEVSWNSMVVAYMQHR 219


>gi|147800371|emb|CAN70930.1| hypothetical protein VITISV_000387 [Vitis vinifera]
          Length = 773

 Score =  358 bits (919), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 198/540 (36%), Positives = 298/540 (55%), Gaps = 43/540 (7%)

Query: 13  VKNSLIQFYSVCGRVRDARWVF-DESDDLDVVS--WNSMINGYVRNGEILEGLKLFDKM- 68
           +K  LI  +SVCGRV +AR VF D  +D+D+    W +M  GY RNG   E L L+ +M 
Sbjct: 110 LKGKLITLFSVCGRVDEARRVFEDGGEDVDLPESVWVAMGIGYSRNGYPKEALLLYYEMV 169

Query: 69  --------------------------------------PQRNDVSWNSILGGLVRFGSVD 90
                                                    + V  N++L      G  +
Sbjct: 170 CQFGQLGNFAFSMALKACSDLGDLRTGRAVHAQVLKATEDPDQVVNNALLRLYSEDGCFE 229

Query: 91  DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
           +A R+F+ MP R+LVSW  LI+G  +     EA+  FR MQ   +  +   L ++L  CA
Sbjct: 230 EALRMFDGMPHRNLVSWNSLIAGLVKKEGVFEAIEAFRIMQGKGMGFSWVTLTTILPVCA 289

Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
           ++ AL  G  +++ I K   K D+ +  +L+DMYAKCG++D   +VF+    KD++++ +
Sbjct: 290 RVTALGSGKEIHAVIVKSTAKPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGKDLTSWNT 349

Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
            I G A+NG   EA E F+ M   G SPD I++IA+LS CSH G  + G   F  M   H
Sbjct: 350 LITGYAINGRMTEAMESFQEMICSGFSPDGITFIALLSGCSHAGLADDGCRLFEMMKMDH 409

Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
           GI P ++HYAC+VD+LGRAG ++EA   + +MP KP   IWG+LL +CR+H N  + + +
Sbjct: 410 GISPTVEHYACLVDVLGRAGRIKEALEIVKNMPFKPTGSIWGSLLNSCRLHGNVPLAEAV 469

Query: 331 GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHE 390
              L E + N+ G Y++LSNIY      E+ + VR+ M KR + +  GCS +++   +H 
Sbjct: 470 AKRLFELEPNNAGNYVMLSNIYANAGMWESVKVVREFMEKRGMTKEAGCSWLQIKSKIHT 529

Query: 391 FLAGDRSH-EKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLAL 449
           F+AG  +    + E  + W+ +++ ++  GY  +T  V+ D+ EE +   +  HSE+LA 
Sbjct: 530 FVAGGSNEFRNSVEYKKVWKRLMEAMEEVGYVPDTGVVLHDVSEEMRAMWVCGHSERLAT 589

Query: 450 AFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLE 509
            F LI T  G  IRI KN+R+C DCHS +K +SKV  R I +RD   +HHF+DG CS ++
Sbjct: 590 MFALINTASGMPIRITKNLRVCVDCHSWVKTLSKVTGRVIVLRDTNRFHHFKDGVCSSIQ 649



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 114/262 (43%), Gaps = 54/262 (20%)

Query: 2   VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
           V+K +   D  V N+L++ YS  G   +A  +FD     ++VSWNS+I G V+   + E 
Sbjct: 203 VLKATEDPDQVVNNALLRLYSEDGCFEEALRMFDGMPHRNLVSWNSLIAGLVKKEGVFEA 262

Query: 62  LKLFDKMPQRN-DVSW--------------------------------------NSILGG 82
           ++ F  M  +    SW                                      NS++  
Sbjct: 263 IEAFRIMQGKGMGFSWVTLTTILPVCARVTALGSGKEIHAVIVKSTAKPDAPVLNSLVDM 322

Query: 83  LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
             + G++D   RVFN M  + L SW  LI+G+A NGR  EA+  F+EM      P+    
Sbjct: 323 YAKCGAMDYCRRVFNGMQGKDLTSWNTLITGYAINGRMTEAMESFQEMICSGFSPDGITF 382

Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILC------AALIDMYAKCGSIDLAMQV 196
           ++LLS C+  G  D G  ++       +K+D  +       A L+D+  + G I  A+++
Sbjct: 383 IALLSGCSHAGLADDGCRLFEM-----MKMDHGISPTVEHYACLVDVLGRAGRIKEALEI 437

Query: 197 FHSYGDKDVSAYTSAIFGLAMN 218
             +   K     T +I+G  +N
Sbjct: 438 VKNMPFKP----TGSIWGSLLN 455



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 81/158 (51%), Gaps = 12/158 (7%)

Query: 1   MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
           ++VK++   D  V NSL+  Y+ CG +   R VF+     D+ SWN++I GY  NG + E
Sbjct: 303 VIVKSTAKPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGKDLTSWNTLITGYAINGRMTE 362

Query: 61  GLKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVV-----LI 111
            ++ F +M       + +++ ++L G    G  DD CR+F  M     +S  V     L+
Sbjct: 363 AMESFQEMICSGFSPDGITFIALLSGCSHAGLADDGCRLFEMMKMDHGISPTVEHYACLV 422

Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
               + GR KEAL + + M     +P  +I  SLL++C
Sbjct: 423 DVLGRAGRIKEALEIVKNMP---FKPTGSIWGSLLNSC 457



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 21/37 (56%), Positives = 25/37 (67%)

Query: 447 LALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSK 483
           LA  F LI T  G  IRI KN+ +C DCHS +K+VSK
Sbjct: 700 LATMFALINTASGMPIRITKNLHVCVDCHSWVKIVSK 736


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.322    0.137    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,099,925,489
Number of Sequences: 23463169
Number of extensions: 336244159
Number of successful extensions: 1000104
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 9025
Number of HSP's successfully gapped in prelim test: 2907
Number of HSP's that attempted gapping in prelim test: 835334
Number of HSP's gapped (non-prelim): 61555
length of query: 511
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 364
effective length of database: 8,910,109,524
effective search space: 3243279866736
effective search space used: 3243279866736
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 79 (35.0 bits)