BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010405
(511 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 491 bits (1264), Expect = e-138, Method: Compositional matrix adjust.
Identities = 226/472 (47%), Positives = 326/472 (69%), Gaps = 1/472 (0%)
Query: 41 DVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMP 100
DV + NS+IN Y G LFD++P+ +DVSWNS++ G V+ G +D A +F +M
Sbjct: 149 DVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMA 208
Query: 101 KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNW 160
+++ +SW +ISG+ Q KEAL LF EMQ+ D+EP++ L + LSACAQLGAL+ G W
Sbjct: 209 EKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKW 268
Query: 161 VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGH 220
++SY+ K I++DS+L LIDMYAKCG ++ A++VF + K V A+T+ I G A +GH
Sbjct: 269 IHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGH 328
Query: 221 SIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA 280
EA F M+ GI P+ I++ AVL+ACS+ G VE+G F+SM + +KP ++HY
Sbjct: 329 GREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYG 388
Query: 281 CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQN 340
C+VDLLGRAGLL+EA+ FI MP+KP+ VIWG LL ACR+H+N E+G+ IG +LI D
Sbjct: 389 CIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPY 448
Query: 341 HDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEK 400
H GRY+ +NI+ K + A E R+ M+++ + + PGCS I L+G HEFLAGDRSH +
Sbjct: 449 HGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPE 508
Query: 401 TQEIYQFWEEIVKKIKNYGYNVETRSVMFD-IEEEEKETVIGYHSEKLALAFGLICTKPG 459
++I W + +K++ GY E ++ D ++++E+E ++ HSEKLA+ +GLI TKPG
Sbjct: 509 IEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLAITYGLIKTKPG 568
Query: 460 SVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
++IRI+KN+R+C DCH KL+SK++KR I +RDR +HHF DG CSC +YW
Sbjct: 569 TIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 620
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 113/258 (43%), Gaps = 33/258 (12%)
Query: 95 VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC----- 149
VF+ + W ++I GF+ + P+ +L L++ M N+ SLL AC
Sbjct: 71 VFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSA 130
Query: 150 --------AQLGALDYGNWVY-------SYIQKKCIKL-----------DSILCAALIDM 183
AQ+ L Y N VY SY KL D + ++I
Sbjct: 131 FEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKG 190
Query: 184 YAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISY 243
Y K G +D+A+ +F +K+ ++T+ I G + EA +LF M++ + PD++S
Sbjct: 191 YVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSL 250
Query: 244 IAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP 303
LSAC+ LG +E+G + HS + I+ + ++D+ + G +EEA ++
Sbjct: 251 ANALSACAQLGALEQG-KWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIK 309
Query: 304 MKPDNVIWGTLLGACRVH 321
K W L+ H
Sbjct: 310 KKSVQA-WTALISGYAYH 326
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 478 bits (1230), Expect = e-134, Method: Compositional matrix adjust.
Identities = 233/512 (45%), Positives = 345/512 (67%), Gaps = 19/512 (3%)
Query: 1 MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESD-DLDVVSWNSMINGYVRNGEIL 59
+ +K F D FV ++L++ Y +CG ++DAR +F ++ + D+V M + R+GEI
Sbjct: 153 LALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVV---MTDRRKRDGEI- 208
Query: 60 EGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGR 119
V WN ++ G +R G A +F++M +RS+VSW +ISG++ NG
Sbjct: 209 --------------VLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGF 254
Query: 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
K+A+ +FREM+ D+ PN LVS+L A ++LG+L+ G W++ Y + I++D +L +A
Sbjct: 255 FKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSA 314
Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
LIDMY+KCG I+ A+ VF ++V +++ I G A++G + +A + F M+ G+ P
Sbjct: 315 LIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPS 374
Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI 299
++YI +L+ACSH G VE+G YF M V G++P ++HY CMVDLLGR+GLL+EAE FI
Sbjct: 375 DVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFI 434
Query: 300 ASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGE 359
+MP+KPD+VIW LLGACR+ N EMG+R+ N+L++ + G Y+ LSN+Y
Sbjct: 435 LNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWS 494
Query: 360 NAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYG 419
E+R M+++ I++ PGCSLI++DGV+HEF+ D SH K +EI EI K++ G
Sbjct: 495 EVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAG 554
Query: 420 YNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMK 479
Y T V+ ++EEE+KE V+ YHSEK+A AFGLI T PG IRIVKN+RIC DCHS++K
Sbjct: 555 YRPITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIK 614
Query: 480 LVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
L+SKV+KRKI++RDRK +HHF+DGSCSC++YW
Sbjct: 615 LISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 646
Score = 99.4 bits (246), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 131/284 (46%), Gaps = 50/284 (17%)
Query: 89 VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKE--ALALFREMQSLD-LEPNSAILVSL 145
+D A ++FNQMP+R+ SW +I GF+++ K A+ LF EM S + +EPN S+
Sbjct: 75 LDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSV 134
Query: 146 LSACAQLG-----------ALDYG---------NWVYSYIQ------------KKCIKLD 173
L ACA+ G AL YG N V Y+ K I+ D
Sbjct: 135 LKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKD 194
Query: 174 SILCA-------------ALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGH 220
++ +ID Y + G A +F + V ++ + I G ++NG
Sbjct: 195 MVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGF 254
Query: 221 SIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA 280
+A E+F MK I P+ ++ ++VL A S LG +E G + H + GI+ + +
Sbjct: 255 FKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELG-EWLHLYAEDSGIRIDDVLGS 313
Query: 281 CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
++D+ + G++E+A + +P + + + W ++ +H A
Sbjct: 314 ALIDMYSKCGIIEKAIHVFERLP-RENVITWSAMINGFAIHGQA 356
>sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890
OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1
Length = 573
Score = 453 bits (1165), Expect = e-126, Method: Compositional matrix adjust.
Identities = 219/504 (43%), Positives = 328/504 (65%), Gaps = 28/504 (5%)
Query: 10 DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
D FV+ SL+ YS CG +R A+ VFD+S D+ +WNS++N Y + G I + KLFD+MP
Sbjct: 96 DPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMP 155
Query: 70 QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE 129
+RN +SW+ ++ G V G +A +F +M Q +P EA
Sbjct: 156 ERNVISWSCLINGYVMCGKYKEALDLFREM----------------QLPKPNEAF----- 194
Query: 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189
+ PN + ++LSAC +LGAL+ G WV++YI K +++D +L ALIDMYAKCGS
Sbjct: 195 -----VRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGS 249
Query: 190 IDLAMQVFHSYGD-KDVSAYTSAIFGLAMNGHSIEAFELFENM-KSKGISPDSISYIAVL 247
++ A +VF++ G KDV AY++ I LAM G + E F+LF M S I+P+S++++ +L
Sbjct: 250 LERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGIL 309
Query: 248 SACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPD 307
AC H G + +G YF M + GI P + HY CMVDL GR+GL++EAE+FIASMPM+PD
Sbjct: 310 GACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPD 369
Query: 308 NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKT 367
+IWG+LL R+ + + + LIE D + G Y+LLSN+Y +T + + +R
Sbjct: 370 VLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHE 429
Query: 368 MRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSV 427
M + I + PGCS +E++GVVHEF+ GD S ++++ IY +EI+++++ GY +T+ V
Sbjct: 430 MEVKGINKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEV 489
Query: 428 MFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKR 487
+ D+ E++KE + YHSEKLA+AF L+ T+PG+ +RI+KN+RIC DCH MK++SK+F R
Sbjct: 490 LLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSR 549
Query: 488 KISIRDRKHYHHFEDGSCSCLEYW 511
+I +RD +HHF DGSCSC ++W
Sbjct: 550 EIVVRDCNRFHHFRDGSCSCRDFW 573
Score = 79.3 bits (194), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 115/266 (43%), Gaps = 48/266 (18%)
Query: 2 VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
V +S + D+ NS++ Y+ G + DAR +FDE + +V+SW+ +INGYV G+ E
Sbjct: 119 VFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEA 178
Query: 62 LKLFDKMP---------QRNDVSWNSILGGLVRF-------------------------- 86
L LF +M + N+ + +++L R
Sbjct: 179 LDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGT 238
Query: 87 ---------GSVDDACRVFNQM-PKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD-L 135
GS++ A RVFN + K+ + ++ +I A G E LF EM + D +
Sbjct: 239 ALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNI 298
Query: 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSIL-CAALIDMYAKCGSIDLAM 194
PNS V +L AC G ++ G + + ++ SI ++D+Y + G I A
Sbjct: 299 NPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAE 358
Query: 195 QVFHSYG-DKDVSAYTSAIFGLAMNG 219
S + DV + S + G M G
Sbjct: 359 SFIASMPMEPDVLIWGSLLSGSRMLG 384
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 98/240 (40%), Gaps = 40/240 (16%)
Query: 107 WVVLISGFAQN-GRPKE--ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYS 163
W ++I N P+ ++++ M++ + P+ LL + L G ++
Sbjct: 27 WNIIIRAIVHNVSSPQRHSPISVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRTHA 86
Query: 164 YIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSA------------ 211
I + D + +L++MY+ CG + A +VF G KD+ A+ S
Sbjct: 87 QILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDD 146
Query: 212 -------------------IFGLAMNGHSIEAFELFENMK-----SKGISPDSISYIAVL 247
I G M G EA +LF M+ + P+ + VL
Sbjct: 147 ARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVL 206
Query: 248 SACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPD 307
SAC LG +E+G + H+ D + ++ ++ ++D+ + G LE A+ ++ K D
Sbjct: 207 SACGRLGALEQG-KWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKD 265
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 451 bits (1159), Expect = e-126, Method: Compositional matrix adjust.
Identities = 234/583 (40%), Positives = 346/583 (59%), Gaps = 72/583 (12%)
Query: 1 MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
M VK++ DVFV NSLI Y CG + A VF + DVVSWNSMING+V+ G +
Sbjct: 156 MAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDK 215
Query: 61 GLKLFDKMP----------------------------------QRNDVS-----WNSILG 81
L+LF KM + N V+ N++L
Sbjct: 216 ALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLD 275
Query: 82 GLVRFGSVDDACRVF-------------------------------NQMPKRSLVSWVVL 110
+ GS++DA R+F N MP++ +V+W L
Sbjct: 276 MYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNAL 335
Query: 111 ISGFAQNGRPKEALALFREMQ-SLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC 169
IS + QNG+P EAL +F E+Q +++ N LVS LSACAQ+GAL+ G W++SYI+K
Sbjct: 336 ISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHG 395
Query: 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFE 229
I+++ + +ALI MY+KCG ++ + +VF+S +DV +++ I GLAM+G EA ++F
Sbjct: 396 IRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFY 455
Query: 230 NMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRA 289
M+ + P+ +++ V ACSH G V++ FH M +GI PE HYAC+VD+LGR+
Sbjct: 456 KMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRS 515
Query: 290 GLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLS 349
G LE+A FI +MP+ P +WG LLGAC++H N + + L+E + +DG ++LLS
Sbjct: 516 GYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLS 575
Query: 350 NIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWE 409
NIY + K EN E+RK MR +K+ PGCS IE+DG++HEFL+GD +H ++++Y
Sbjct: 576 NIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLH 635
Query: 410 EIVKKIKNYGYNVETRSVMFDIEEEE-KETVIGYHSEKLALAFGLICTKPGSVIRIVKNI 468
E+++K+K+ GY E V+ IEEEE KE + HSEKLA+ +GLI T+ VIR++KN+
Sbjct: 636 EVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKVIRVIKNL 695
Query: 469 RICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
R+C DCHS KL+S+++ R+I +RDR +HHF +G CSC ++W
Sbjct: 696 RVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738
Score = 112 bits (281), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 128/260 (49%), Gaps = 3/260 (1%)
Query: 80 LGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQS-LDLEPN 138
+ L F S++ A +VF+++PK + +W LI +A P ++ F +M S PN
Sbjct: 71 MAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPN 130
Query: 139 SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH 198
L+ A A++ +L G ++ K + D + +LI Y CG +D A +VF
Sbjct: 131 KYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFT 190
Query: 199 SYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEK 258
+ +KDV ++ S I G G +A ELF+ M+S+ + ++ + VLSAC+ + +E
Sbjct: 191 TIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEF 250
Query: 259 GFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318
G S + + + L M+D+ + G +E+A+ +M K DNV W T+L
Sbjct: 251 G-RQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEK-DNVTWTTMLDGY 308
Query: 319 RVHRNAEMGQRIGNMLIESD 338
+ + E + + N + + D
Sbjct: 309 AISEDYEAAREVLNSMPQKD 328
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 439 bits (1128), Expect = e-122, Method: Compositional matrix adjust.
Identities = 215/511 (42%), Positives = 324/511 (63%), Gaps = 32/511 (6%)
Query: 2 VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
+V+ F DV+V+NSL+ Y+ CG + A +F + DVVSW SM+ GY + G +
Sbjct: 143 IVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVENA 202
Query: 62 LKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPK 121
++FD+MP RN +W+ ++I+G+A+N +
Sbjct: 203 REMFDEMPHRNLFTWS-------------------------------IMINGYAKNNCFE 231
Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
+A+ LF M+ + N ++VS++S+CA LGAL++G Y Y+ K + ++ IL AL+
Sbjct: 232 KAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALV 291
Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
DM+ +CG I+ A+ VF + D +++S I GLA++GH+ +A F M S G P +
Sbjct: 292 DMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDV 351
Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
++ AVLSACSH G VEKG + +M HGI+P L+HY C+VD+LGRAG L EAENFI
Sbjct: 352 TFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILK 411
Query: 302 MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361
M +KP+ I G LLGAC++++N E+ +R+GNMLI+ H G Y+LLSNIY + +
Sbjct: 412 MHVKPNAPILGALLGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKI 471
Query: 362 EEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAG-DRSHEKTQEIYQFWEEIVKKIKNYGY 420
E +R M+++ +K+ PG SLIE+DG +++F G D+ H + +I + WEEI+ KI+ GY
Sbjct: 472 ESLRDMMKEKLVKKPPGWSLIEIDGKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGY 531
Query: 421 NVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKL 480
T FD++EEEKE+ I HSEKLA+A+G++ TKPG+ IRIVKN+R+C DCH+ KL
Sbjct: 532 KGNTGDAFFDVDEEEKESSIHMHSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKL 591
Query: 481 VSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
+S+V+ R++ +RDR +HHF +G CSC +YW
Sbjct: 592 ISEVYGRELIVRDRNRFHHFRNGVCSCRDYW 622
Score = 86.3 bits (212), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 123/261 (47%), Gaps = 33/261 (12%)
Query: 95 VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA 154
+F+Q+ +L + +LI F+ P +A + +M + P++ L+ A +++
Sbjct: 73 IFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMEC 132
Query: 155 LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFG 214
+ G +S I + + D + +L+ MYA CG I A ++F G +DV ++TS + G
Sbjct: 133 VLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAG 192
Query: 215 --------------------------LAMNGHSI-----EAFELFENMKSKGISPDSISY 243
+ +NG++ +A +LFE MK +G+ +
Sbjct: 193 YCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVM 252
Query: 244 IAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP 303
++V+S+C+HLG +E G + + H + L +VD+ R G +E+A + +P
Sbjct: 253 VSVISSCAHLGALEFGERAYEYVVKSH-MTVNLILGTALVDMFWRCGDIEKAIHVFEGLP 311
Query: 304 MKPDNVIWGTLLGACRVHRNA 324
+ D++ W +++ VH +A
Sbjct: 312 -ETDSLSWSSIIKGLAVHGHA 331
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 435 bits (1119), Expect = e-121, Method: Compositional matrix adjust.
Identities = 214/533 (40%), Positives = 323/533 (60%), Gaps = 31/533 (5%)
Query: 10 DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
DV N++I Y+ G++ +AR +FDES DV +W +M++GY++N + E +LFDKMP
Sbjct: 249 DVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMP 308
Query: 70 QRNDVSWNSILGGLVR-------------------------------FGSVDDACRVFNQ 98
+RN+VSWN++L G V+ G + +A +F++
Sbjct: 309 ERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDK 368
Query: 99 MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
MPKR VSW +I+G++Q+G EAL LF +M+ N + S LS CA + AL+ G
Sbjct: 369 MPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELG 428
Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
++ + K + + AL+ MY KCGSI+ A +F KD+ ++ + I G + +
Sbjct: 429 KQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRH 488
Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDH 278
G A FE+MK +G+ PD + +AVLSACSH G V+KG YF++M +G+ P H
Sbjct: 489 GFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQH 548
Query: 279 YACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338
YACMVDLLGRAGLLE+A N + +MP +PD IWGTLLGA RVH N E+ + + + +
Sbjct: 549 YACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAME 608
Query: 339 QNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSH 398
+ G Y+LLSN+Y + + + ++R MR + +K+ PG S IE+ H F GD H
Sbjct: 609 PENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFH 668
Query: 399 EKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKP 458
+ EI+ F EE+ ++K GY +T V+ D+EEEEKE ++ YHSE+LA+A+G++
Sbjct: 669 PEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSS 728
Query: 459 GSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
G IR++KN+R+C DCH+A+K ++++ R I +RD +HHF+DGSCSC +YW
Sbjct: 729 GRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781
Score = 135 bits (341), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 94/304 (30%), Positives = 156/304 (51%), Gaps = 20/304 (6%)
Query: 15 NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDV 74
N +I Y G AR +FDE + D+VSWN MI GYVRN + + +LF+ MP+R+
Sbjct: 99 NGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVC 158
Query: 75 SWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD 134
SWN++L G + G VDDA VF++MP+++ VSW L+S + QN + +EA LF+ ++
Sbjct: 159 SWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWA 218
Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
L + +L + + A + + S + + ++I+ YA+ G ID A
Sbjct: 219 LVSWNCLLGGFVKKKKIVEARQFFD---SMNVRDVVSWNTIITG-----YAQSGKIDEAR 270
Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
Q+F +DV +T+ + G N EA ELF+ M + + +S+ A+L+ G
Sbjct: 271 QLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPER----NEVSWNAMLA-----G 321
Query: 255 WVE-KGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGT 313
+V+ + +FDV + + + M+ + G + EA+N MP K D V W
Sbjct: 322 YVQGERMEMAKELFDVMPCR-NVSTWNTMITGYAQCGKISEAKNLFDKMP-KRDPVSWAA 379
Query: 314 LLGA 317
++
Sbjct: 380 MIAG 383
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 76/156 (48%), Gaps = 12/156 (7%)
Query: 2 VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
+VK + FV N+L+ Y CG + +A +F E D+VSWN+MI GY R+G
Sbjct: 435 LVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVA 494
Query: 62 LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV-----SWVVLIS 112
L+ F+ M + +D + ++L G VD + F M + V + ++
Sbjct: 495 LRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVD 554
Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148
+ G ++A L M+++ EP++AI +LL A
Sbjct: 555 LLGRAGLLEDAHNL---MKNMPFEPDAAIWGTLLGA 587
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 429 bits (1102), Expect = e-119, Method: Compositional matrix adjust.
Identities = 202/474 (42%), Positives = 316/474 (66%), Gaps = 2/474 (0%)
Query: 40 LDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQM 99
+D +++ Y + G+++ K+FD+MP+R+ VS +++ + G+V+ A +F+ M
Sbjct: 159 IDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSM 218
Query: 100 PKRSLVSWVVLISGFAQNGRPKEALALFREMQSL-DLEPNSAILVSLLSACAQLGALDYG 158
+R +VSW V+I G+AQ+G P +AL LF+++ + +P+ +V+ LSAC+Q+GAL+ G
Sbjct: 219 CERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETG 278
Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
W++ +++ I+L+ +C LIDMY+KCGS++ A+ VF+ KD+ A+ + I G AM+
Sbjct: 279 RWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMH 338
Query: 219 GHSIEAFELFENMKS-KGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELD 277
G+S +A LF M+ G+ P I++I L AC+H G V +G F SM +GIKP+++
Sbjct: 339 GYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIE 398
Query: 278 HYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIES 337
HY C+V LLGRAG L+ A I +M M D+V+W ++LG+C++H + +G+ I LI
Sbjct: 399 HYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGL 458
Query: 338 DQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRS 397
+ + G Y+LLSNIY E +VR M+++ I + PG S IE++ VHEF AGDR
Sbjct: 459 NIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDRE 518
Query: 398 HEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTK 457
H K++EIY +I ++IK++GY T +V+ D+EE EKE + HSE+LA+A+GLI TK
Sbjct: 519 HSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLISTK 578
Query: 458 PGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
PGS ++I KN+R+CSDCH+ KL+SK+ RKI +RDR +HHF DGSCSC ++W
Sbjct: 579 PGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 123/278 (44%), Gaps = 38/278 (13%)
Query: 87 GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
G + + +F+Q L + I+ + NG +A L+ ++ S ++ PN SLL
Sbjct: 78 GKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLL 137
Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAK-------------------- 186
+C+ G +++++ K + +D + L+D+YAK
Sbjct: 138 KSCST----KSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLV 193
Query: 187 -------C----GSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG 235
C G+++ A +F S ++D+ ++ I G A +G +A LF+ + ++G
Sbjct: 194 SSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEG 253
Query: 236 -ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEE 294
PD I+ +A LSACS +G +E G + H I+ + ++D+ + G LEE
Sbjct: 254 KPKPDEITVVAALSACSQIGALETG-RWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEE 312
Query: 295 AENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGN 332
A P K D V W ++ +H ++ R+ N
Sbjct: 313 AVLVFNDTPRK-DIVAWNAMIAGYAMHGYSQDALRLFN 349
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 75/158 (47%), Gaps = 12/158 (7%)
Query: 184 YAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISY 243
YA G I ++ +FH D D+ +T+AI ++NG +AF L+ + S I+P+ ++
Sbjct: 74 YASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTF 133
Query: 244 IAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYAC--MVDLLGRAGLLEEAENFIAS 301
++L +CS K H+ G+ +D Y +VD+ + G + A+
Sbjct: 134 SSLLKSCS-----TKSGKLIHTHVLKFGLG--IDPYVATGLVDVYAKGGDVVSAQKVFDR 186
Query: 302 MPMKPDNVIWGTLLGACRVHR-NAEMGQRIGNMLIESD 338
MP + +++ T + C + N E + + + + E D
Sbjct: 187 MPER--SLVSSTAMITCYAKQGNVEAARALFDSMCERD 222
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 428 bits (1100), Expect = e-119, Method: Compositional matrix adjust.
Identities = 211/541 (39%), Positives = 325/541 (60%), Gaps = 37/541 (6%)
Query: 7 FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFD 66
+++D +V I YS CG+++ +F E D+V++N+MI+GY NGE L LF
Sbjct: 253 YSHD-YVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFK 311
Query: 67 KM----------------P----------------QRNDVSWNSILGGLV----RFGSVD 90
++ P + N +S S+ L + ++
Sbjct: 312 ELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIE 371
Query: 91 DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
A ++F++ P++SL SW +ISG+ QNG ++A++LFREMQ + PN + +LSACA
Sbjct: 372 SARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACA 431
Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
QLGAL G WV+ ++ + + ALI MYAKCGSI A ++F K+ + +
Sbjct: 432 QLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNT 491
Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
I G ++G EA +F M + GI+P ++++ VL ACSH G V++G F+SM +
Sbjct: 492 MISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRY 551
Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
G +P + HYACMVD+LGRAG L+ A FI +M ++P + +W TLLGACR+H++ + + +
Sbjct: 552 GFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTV 611
Query: 331 GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHE 390
L E D ++ G ++LLSNI+ A VR+T +KRK+ +APG +LIE+ H
Sbjct: 612 SEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHV 671
Query: 391 FLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALA 450
F +GD+SH + +EIY+ E++ K++ GY ET + D+EEEE+E ++ HSE+LA+A
Sbjct: 672 FTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIA 731
Query: 451 FGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEY 510
FGLI T+PG+ IRI+KN+R+C DCH+ KL+SK+ +R I +RD +HHF+DG CSC +Y
Sbjct: 732 FGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDY 791
Query: 511 W 511
W
Sbjct: 792 W 792
Score = 110 bits (274), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 85/367 (23%), Positives = 160/367 (43%), Gaps = 48/367 (13%)
Query: 10 DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLF---- 65
++ + +++++ Y RV DAR VFD + D + WN+MI+GY +N +E +++F
Sbjct: 153 ELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLI 212
Query: 66 -------------DKMPQRNDV-------------------SWNSILGGLVRF----GSV 89
D +P ++ S + +L G + G +
Sbjct: 213 NESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKI 272
Query: 90 DDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
+F + K +V++ +I G+ NG + +L+LF+E+ S+ LVSL+
Sbjct: 273 KMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVS 332
Query: 150 AQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYT 209
L L Y ++ Y K + + AL +Y+K I+ A ++F +K + ++
Sbjct: 333 GHL-MLIYA--IHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWN 389
Query: 210 SAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDV 269
+ I G NG + +A LF M+ SP+ ++ +LSAC+ LG + G + H +
Sbjct: 390 AMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLG-KWVHDLVRS 448
Query: 270 HGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQR 329
+ + ++ + + G + EA M K + V W T++ +H GQ
Sbjct: 449 TDFESSIYVSTALIGMYAKCGSIAEARRLFDLM-TKKNEVTWNTMISGYGLHGQ---GQE 504
Query: 330 IGNMLIE 336
N+ E
Sbjct: 505 ALNIFYE 511
Score = 96.7 bits (239), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 130/287 (45%), Gaps = 43/287 (14%)
Query: 3 VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
+K++F V +L YS + AR +FDES + + SWN+MI+GY +NG + +
Sbjct: 346 LKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAI 405
Query: 63 KLFDKMPQRNDVSWNSI-----------LGGL---------------------------- 83
LF +M Q+++ S N + LG L
Sbjct: 406 SLFREM-QKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGM 464
Query: 84 -VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
+ GS+ +A R+F+ M K++ V+W +ISG+ +G+ +EAL +F EM + + P
Sbjct: 465 YAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTF 524
Query: 143 VSLLSACAQLGALDYGNWVY-SYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
+ +L AC+ G + G+ ++ S I + + A ++D+ + G + A+Q +
Sbjct: 525 LCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMS 584
Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248
+ S+ + G A H + K + PD++ Y +LS
Sbjct: 585 IEPGSSVWETLLG-ACRIHKDTNLARTVSEKLFELDPDNVGYHVLLS 630
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 77/365 (21%), Positives = 148/365 (40%), Gaps = 75/365 (20%)
Query: 24 CGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGL 83
GRV + V D D +++ ++++ Y + + + K+FD+MP+++ + WN+
Sbjct: 137 AGRVIHGQAVVDGCDS-ELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNT----- 190
Query: 84 VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD-LEPNSAIL 142
+ISG+ +N E++ +FR++ + ++ L
Sbjct: 191 --------------------------MISGYRKNEMYVESIQVFRDLINESCTRLDTTTL 224
Query: 143 VSLLSACAQLGALDYGNWVYSYIQKK-CIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
+ +L A A+L L G ++S K C D +L I +Y+KCG I + +F +
Sbjct: 225 LDILPAVAELQELRLGMQIHSLATKTGCYSHDYVL-TGFISLYSKCGKIKMGSALFREFR 283
Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL-------G 254
D+ AY + I G NG + + LF+ + G S + ++++ HL G
Sbjct: 284 KPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHG 343
Query: 255 WVEKGFYYFHS---------------------MFDVHGIKPELDHYACMVDLLGRAGLLE 293
+ K + H+ +FD + L + M+ + GL E
Sbjct: 344 YCLKSNFLSHASVSTALTTVYSKLNEIESARKLFD-ESPEKSLPSWNAMISGYTQNGLTE 402
Query: 294 EAENFIASMP---MKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSN 350
+A + M P+ V +L AC +G+ + +++ +D S+
Sbjct: 403 DAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTD--------FESS 454
Query: 351 IYVET 355
IYV T
Sbjct: 455 IYVST 459
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 78/158 (49%), Gaps = 12/158 (7%)
Query: 1 MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
+V F ++V +LI Y+ CG + +AR +FD + V+WN+MI+GY +G+ E
Sbjct: 445 LVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQE 504
Query: 61 GLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLI 111
L +F +M V++ +L G V + +FN M R S+ + ++
Sbjct: 505 ALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMV 564
Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
+ G + AL ++++ +EP S++ +LL AC
Sbjct: 565 DILGRAGHLQRALQF---IEAMSIEPGSSVWETLLGAC 599
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 424 bits (1090), Expect = e-118, Method: Compositional matrix adjust.
Identities = 225/543 (41%), Positives = 327/543 (60%), Gaps = 41/543 (7%)
Query: 10 DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
DV +LI+ Y+ G + +A+ +FDE DVVSWN+MI+GY G E L+LF M
Sbjct: 199 DVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMM 258
Query: 70 QRN---DVS-----------------------W-------------NSILGGLVRFGSVD 90
+ N D S W N+++ + G ++
Sbjct: 259 KTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELE 318
Query: 91 DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
AC +F ++P + ++SW LI G+ KEAL LF+EM PN ++S+L ACA
Sbjct: 319 TACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACA 378
Query: 151 QLGALDYGNWVYSYIQK--KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAY 208
LGA+D G W++ YI K K + S L +LIDMYAKCG I+ A QVF+S K +S++
Sbjct: 379 HLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSW 438
Query: 209 TSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD 268
+ IFG AM+G + +F+LF M+ GI PD I+++ +LSACSH G ++ G + F +M
Sbjct: 439 NAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQ 498
Query: 269 VHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQ 328
+ + P+L+HY CM+DLLG +GL +EAE I M M+PD VIW +LL AC++H N E+G+
Sbjct: 499 DYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGE 558
Query: 329 RIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVV 388
LI+ + + G Y+LLSNIY + + R + + +K+ PGCS IE+D VV
Sbjct: 559 SFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVV 618
Query: 389 HEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLA 448
HEF+ GD+ H + +EIY EE+ ++ G+ +T V+ ++EEE KE + +HSEKLA
Sbjct: 619 HEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLA 678
Query: 449 LAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCL 508
+AFGLI TKPG+ + IVKN+R+C +CH A KL+SK++KR+I RDR +HHF DG CSC
Sbjct: 679 IAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCN 738
Query: 509 EYW 511
+YW
Sbjct: 739 DYW 741
Score = 163 bits (413), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 164/289 (56%), Gaps = 4/289 (1%)
Query: 39 DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQ 98
DLD+ S+I+ YV+NG + + K+FDK P R+ VS+ +++ G G +++A ++F++
Sbjct: 166 DLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDE 225
Query: 99 MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
+P + +VSW +ISG+A+ G KEAL LF++M ++ P+ + +V+++SACAQ G+++ G
Sbjct: 226 IPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELG 285
Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
V+ +I + + ALID+Y+KCG ++ A +F KDV ++ + I G
Sbjct: 286 RQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHM 345
Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD--VHGIKPEL 276
EA LF+ M G +P+ ++ +++L AC+HLG ++ G + H D + G+
Sbjct: 346 NLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIG-RWIHVYIDKRLKGVTNAS 404
Query: 277 DHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAE 325
++D+ + G +E A S+ K + W ++ +H A+
Sbjct: 405 SLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSS-WNAMIFGFAMHGRAD 452
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 115/263 (43%), Gaps = 33/263 (12%)
Query: 86 FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
F + A VF + + +L+ W + G A + P AL L+ M SL L PNS +
Sbjct: 81 FEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFV 140
Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
L +CA+ A G ++ ++ K LD + +LI MY + G ++ A +VF +DV
Sbjct: 141 LKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDV 200
Query: 206 SAYT-------------------------------SAIFGLAMNGHSIEAFELFENMKSK 234
+YT + I G A G+ EA ELF++M
Sbjct: 201 VSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKT 260
Query: 235 GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEE 294
+ PD + + V+SAC+ G +E G H D HG L ++DL + G LE
Sbjct: 261 NVRPDESTMVTVVSACAQSGSIELG-RQVHLWIDDHGFGSNLKIVNALIDLYSKCGELET 319
Query: 295 AENFIASMPMKPDNVIWGTLLGA 317
A +P K D + W TL+G
Sbjct: 320 ACGLFERLPYK-DVISWNTLIGG 341
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 424 bits (1089), Expect = e-117, Method: Compositional matrix adjust.
Identities = 215/550 (39%), Positives = 319/550 (58%), Gaps = 39/550 (7%)
Query: 1 MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
+VVK F +DV SL+ YS GR+ DA +FDE D VV+W ++ +GY +G E
Sbjct: 136 LVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHRE 195
Query: 61 GLKLFDKMP---------------------------------------QRNDVSWNSILG 81
+ LF KM Q+N +++
Sbjct: 196 AIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVN 255
Query: 82 GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
+ G ++ A VF+ M ++ +V+W +I G+A N PKE + LF +M +L+P+
Sbjct: 256 LYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFS 315
Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
+V LS+CA LGALD G W S I + + + ALIDMYAKCG++ +VF
Sbjct: 316 IVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMK 375
Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
+KD+ +AI GLA NGH +F +F + GISPD +++ +L C H G ++ G
Sbjct: 376 EKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLR 435
Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
+F+++ V+ +K ++HY CMVDL GRAG+L++A I MPM+P+ ++WG LL CR+
Sbjct: 436 FFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLV 495
Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
++ ++ + + LI + + G Y+ LSNIY + + A EVR M K+ +K+ PG S
Sbjct: 496 KDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSW 555
Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIG 441
IEL+G VHEFLA D+SH + +IY E++ +++ G+ T V FD+EEEEKE V+G
Sbjct: 556 IELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKERVLG 615
Query: 442 YHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
YHSEKLA+A GLI T G VIR+VKN+R+C DCH MKL+SK+ +R+I +RD +H F
Sbjct: 616 YHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFT 675
Query: 502 DGSCSCLEYW 511
+GSCSC +YW
Sbjct: 676 NGSCSCNDYW 685
Score = 149 bits (377), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 93/348 (26%), Positives = 172/348 (49%), Gaps = 42/348 (12%)
Query: 2 VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
++ + +D F+ N L++ + + + +F + ++ +NS+ING+V N E
Sbjct: 36 LINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQFPNIFLYNSLINGFVNNHLFHET 95
Query: 62 LKLFDKMPQR--------------------------------------NDV-SWNSILGG 82
L LF + + +DV + S+L
Sbjct: 96 LDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSI 155
Query: 83 LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
G ++DA ++F+++P RS+V+W L SG+ +GR +EA+ LF++M + ++P+S +
Sbjct: 156 YSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFI 215
Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
V +LSAC +G LD G W+ Y+++ ++ +S + L+++YAKCG ++ A VF S +
Sbjct: 216 VQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVE 275
Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
KD+ +++ I G A N E ELF M + + PD S + LS+C+ LG ++ G +
Sbjct: 276 KDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWG 335
Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVI 310
S+ D H L ++D+ + G + A F MK +++
Sbjct: 336 I-SLIDRHEFLTNLFMANALIDMYAKCGAM--ARGFEVFKEMKEKDIV 380
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 99/206 (48%), Gaps = 2/206 (0%)
Query: 110 LISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC 169
LI+GF N E L LF ++ L + +L AC + + G ++S + K
Sbjct: 82 LINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCG 141
Query: 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFE 229
D +L+ +Y+ G ++ A ++F D+ V +T+ G +G EA +LF+
Sbjct: 142 FNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFK 201
Query: 230 NMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRA 289
M G+ PDS + VLSAC H+G ++ G + M ++ K +V+L +
Sbjct: 202 KMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVR-TTLVNLYAKC 260
Query: 290 GLLEEAENFIASMPMKPDNVIWGTLL 315
G +E+A + SM ++ D V W T++
Sbjct: 261 GKMEKARSVFDSM-VEKDIVTWSTMI 285
>sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405
OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1
Length = 612
Score = 422 bits (1086), Expect = e-117, Method: Compositional matrix adjust.
Identities = 202/511 (39%), Positives = 314/511 (61%), Gaps = 31/511 (6%)
Query: 1 MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
M ++ F D V+ LI Y+ G + VF+ D V +M+ R G+++
Sbjct: 133 MTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVF 192
Query: 61 GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
KLF+ MP+R+ ++WN+++ G +AQ G
Sbjct: 193 ARKLFEGMPERDPIAWNAMISG-------------------------------YAQVGES 221
Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
+EAL +F MQ ++ N ++S+LSAC QLGALD G W +SYI++ IK+ L L
Sbjct: 222 REALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTL 281
Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
+D+YAKCG ++ AM+VF +K+V ++SA+ GLAMNG + ELF MK G++P++
Sbjct: 282 VDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNA 341
Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
+++++VL CS +G+V++G +F SM + GI+P+L+HY C+VDL RAG LE+A + I
Sbjct: 342 VTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQ 401
Query: 301 SMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGEN 360
MPMKP +W +LL A R+++N E+G ++E + + G Y+LLSNIY ++ +N
Sbjct: 402 QMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDN 461
Query: 361 AEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGY 420
VR++M+ + +++ PGCS++E++G VHEF GD+SH K +I W++I ++++ GY
Sbjct: 462 VSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGY 521
Query: 421 NVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKL 480
+T VMFDI+EEEKE + HSEK A+AFG++ K IRIVKN+R+C DCH +
Sbjct: 522 KADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMM 581
Query: 481 VSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
+SK+F R+I +RDR +HHF+DG CSC +W
Sbjct: 582 ISKIFNREIIVRDRNRFHHFKDGHCSCNGFW 612
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 111/240 (46%), Gaps = 34/240 (14%)
Query: 89 VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL--DLEPNSAILVSLL 146
+D A ++ ++ K +L + +I ++ P+++ +R + S DL+P++ + L+
Sbjct: 56 LDYANQILDRSEKPTLFALNSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLV 115
Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAK-------------------- 186
AC L + G V+ ++ D + LI +YA+
Sbjct: 116 QACTGLRMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFV 175
Query: 187 -----------CGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG 235
CG + A ++F ++D A+ + I G A G S EA +F M+ +G
Sbjct: 176 CRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEG 235
Query: 236 ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA 295
+ + ++ I+VLSAC+ LG +++G + HS + + IK + +VDL + G +E+A
Sbjct: 236 VKVNGVAMISVLSACTQLGALDQG-RWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKA 294
>sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630
OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1
Length = 643
Score = 421 bits (1083), Expect = e-117, Method: Compositional matrix adjust.
Identities = 215/511 (42%), Positives = 320/511 (62%), Gaps = 2/511 (0%)
Query: 3 VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
+K+ +FV +LI Y CG V AR VFDE ++V+WN++I R ++
Sbjct: 133 LKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDVAGAR 192
Query: 63 KLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKE 122
++FDKM RN SWN +L G ++ G ++ A R+F++MP R VSW +I G A NG E
Sbjct: 193 EIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNE 252
Query: 123 ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182
+ FRE+Q + PN L +LSAC+Q G+ ++G ++ +++K + ALID
Sbjct: 253 SFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALID 312
Query: 183 MYAKCGSIDLAMQVFHSYGDKD-VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
MY++CG++ +A VF +K + ++TS I GLAM+G EA LF M + G++PD I
Sbjct: 313 MYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGI 372
Query: 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301
S+I++L ACSH G +E+G YF M V+ I+PE++HY CMVDL GR+G L++A +FI
Sbjct: 373 SFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQ 432
Query: 302 MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361
MP+ P ++W TLLGAC H N E+ +++ L E D N+ G +LLSN Y K ++
Sbjct: 433 MPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAGKWKDV 492
Query: 362 EEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKN-YGY 420
+RK+M ++IK+ SL+E+ +++F AG++ E ++ +EI+ ++K+ GY
Sbjct: 493 ASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEIILRLKDEAGY 552
Query: 421 NVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKL 480
E S ++D+EEEEKE + HSEKLALAF L G+ IRIVKN+RIC DCH+ MKL
Sbjct: 553 TPEVASALYDVEEEEKEDQVSKHSEKLALAFALARLSKGANIRIVKNLRICRDCHAVMKL 612
Query: 481 VSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
SKV+ +I +RDR +H F+DGSCSC +YW
Sbjct: 613 TSKVYGVEILVRDRNRFHSFKDGSCSCRDYW 643
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 85/170 (50%), Gaps = 13/170 (7%)
Query: 2 VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLD-VVSWNSMINGYVRNGEILE 60
V K +++ V V N+LI YS CG V AR VF+ + +VSW SMI G +G+ E
Sbjct: 295 VEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEE 354
Query: 61 GLKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPK-----RSLVSWVVLI 111
++LF++M + +S+ S+L G +++ F++M + + + ++
Sbjct: 355 AVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMV 414
Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161
+ ++G+ ++A +M + P + + +LL AC+ G ++ V
Sbjct: 415 DLYGRSGKLQKAYDFICQMP---IPPTAIVWRTLLGACSSHGNIELAEQV 461
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/243 (20%), Positives = 96/243 (39%), Gaps = 17/243 (6%)
Query: 92 ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE-PNSAILVSLLSACA 150
A R+ P+ + L+ G++++ P ++A+F EM P+S ++ A
Sbjct: 58 ARRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVE 117
Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
+L G ++ K ++ + LI MY CG ++ A +VF ++ A+ +
Sbjct: 118 NFRSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNA 177
Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
I A E+F+ M + + S+ +L+ G +E F M
Sbjct: 178 VITACFRGNDVAGAREIFDKM----LVRNHTSWNVMLAGYIKAGELESAKRIFSEM---- 229
Query: 271 GIKPELD--HYACMVDLLGRAGLLEEAENFIASMP---MKPDNVIWGTLLGACRVHRNAE 325
P D ++ M+ + G E+ + + M P+ V +L AC + E
Sbjct: 230 ---PHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFE 286
Query: 326 MGQ 328
G+
Sbjct: 287 FGK 289
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 414 bits (1065), Expect = e-115, Method: Compositional matrix adjust.
Identities = 213/513 (41%), Positives = 330/513 (64%), Gaps = 12/513 (2%)
Query: 10 DVFVKNSLIQFYSVCGRVRDARWVFDESD-----DLDVVSWNSMINGY-----VRNGEIL 59
+VF+ N+LI+ Y+ G A ++ E + D ++ +I VR GE +
Sbjct: 84 NVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETI 143
Query: 60 EGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGR 119
+ + V NS+L G V A +VF++MP++ LV+W +I+GFA+NG+
Sbjct: 144 HSVVIRSGFGSLIYVQ-NSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGK 202
Query: 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
P+EALAL+ EM S ++P+ +VSLLSACA++GAL G V+ Y+ K + +
Sbjct: 203 PEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNV 262
Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKS-KGISP 238
L+D+YA+CG ++ A +F DK+ ++TS I GLA+NG EA ELF+ M+S +G+ P
Sbjct: 263 LLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLP 322
Query: 239 DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENF 298
I+++ +L ACSH G V++GF YF M + + I+P ++H+ CMVDLL RAG +++A +
Sbjct: 323 CEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEY 382
Query: 299 IASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKG 358
I SMPM+P+ VIW TLLGAC VH ++++ + +++ + NH G Y+LLSN+Y +
Sbjct: 383 IKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRW 442
Query: 359 ENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNY 418
+ +++RK M + +K+ PG SL+E+ VHEFL GD+SH ++ IY +E+ ++++
Sbjct: 443 SDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSE 502
Query: 419 GYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAM 478
GY + +V D+EEEEKE + YHSEK+A+AF LI T S I +VKN+R+C+DCH A+
Sbjct: 503 GYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAI 562
Query: 479 KLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
KLVSKV+ R+I +RDR +HHF++GSCSC +YW
Sbjct: 563 KLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 116/242 (47%), Gaps = 45/242 (18%)
Query: 1 MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
+V+++ F ++V+NSL+ Y+ CG V A VFD+ + D+V+WNS+ING+ NG+ E
Sbjct: 146 VVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEE 205
Query: 61 GLKLFDKMPQ---------------------------------------RNDVSWNSILG 81
L L+ +M RN S N +L
Sbjct: 206 ALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLD 265
Query: 82 GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD-LEPNSA 140
R G V++A +F++M ++ VSW LI G A NG KEA+ LF+ M+S + L P
Sbjct: 266 LYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEI 325
Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKC---IKLDSILCAALIDMYAKCGSIDLAMQVF 197
V +L AC+ G + G + ++++ +++ C ++D+ A+ G + A +
Sbjct: 326 TFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGC--MVDLLARAGQVKKAYEYI 383
Query: 198 HS 199
S
Sbjct: 384 KS 385
>sp|Q9MAT2|PPR10_ARATH Pentatricopeptide repeat-containing protein At1g04840
OS=Arabidopsis thaliana GN=PCMP-H64 PE=2 SV=1
Length = 665
Score = 414 bits (1063), Expect = e-114, Method: Compositional matrix adjust.
Identities = 213/514 (41%), Positives = 310/514 (60%), Gaps = 4/514 (0%)
Query: 2 VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDL----DVVSWNSMINGYVRNGE 57
+KN D FV+ SL+ Y+ G+++ A VF+ES D ++ WN +INGY R +
Sbjct: 152 TLKNFVDCDSFVRLSLVDMYAKTGQLKHAFQVFEESPDRIKKESILIWNVLINGYCRAKD 211
Query: 58 ILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQN 117
+ LF MP+RN SW++++ G V G ++ A ++F MP++++VSW LI+GF+Q
Sbjct: 212 MHMATTLFRSMPERNSGSWSTLIKGYVDSGELNRAKQLFELMPEKNVVSWTTLINGFSQT 271
Query: 118 GRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILC 177
G + A++ + EM L+PN + ++LSAC++ GAL G ++ YI IKLD +
Sbjct: 272 GDYETAISTYFEMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIG 331
Query: 178 AALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGIS 237
AL+DMYAKCG +D A VF + KD+ ++T+ I G A++G +A + F M G
Sbjct: 332 TALVDMYAKCGELDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEK 391
Query: 238 PDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAEN 297
PD + ++AVL+AC + V+ G +F SM + I+P L HY +VDLLGRAG L EA
Sbjct: 392 PDEVVFLAVLTACLNSSEVDLGLNFFDSMRLDYAIEPTLKHYVLVVDLLGRAGKLNEAHE 451
Query: 298 FIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLK 357
+ +MP+ PD W L AC+ H+ + + L+E D G YI L +
Sbjct: 452 LVENMPINPDLTTWAALYRACKAHKGYRRAESVSQNLLELDPELCGSYIFLDKTHASKGN 511
Query: 358 GENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKN 417
++ E+ R +++KR +R+ G S IELDG +++F AGD SH+ TQEI +EI+
Sbjct: 512 IQDVEKRRLSLQKRIKERSLGWSYIELDGQLNKFSAGDYSHKLTQEIGLKLDEIISLAIQ 571
Query: 418 YGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSA 477
GYN + DIEEEEKE V G HSEKLAL G + T PG+ IRI+KN+RIC DCHS
Sbjct: 572 KGYNPGADWSIHDIEEEEKENVTGIHSEKLALTLGFLRTAPGTTIRIIKNLRICGDCHSL 631
Query: 478 MKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
MK VSK+ +R I +RD + +HHF+DG CSC +YW
Sbjct: 632 MKYVSKISQRDILLRDARQFHHFKDGRCSCGDYW 665
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 115/300 (38%), Gaps = 68/300 (22%)
Query: 88 SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLS 147
S D + +F +R+ LI G +N R + ++ F M L ++P+ +L
Sbjct: 75 SPDYSLSIFRNSEERNPFVLNALIRGLTENARFESSVRHFILMLRLGVKPDRLTFPFVLK 134
Query: 148 ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV----------- 196
+ ++LG G +++ K + DS + +L+DMYAK G + A QV
Sbjct: 135 SNSKLGFRWLGRALHAATLKNFVDCDSFVRLSLVDMYAKTGQLKHAFQVFEESPDRIKKE 194
Query: 197 ------------------------FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMK 232
F S +++ ++++ I G +G A +LFE M
Sbjct: 195 SILIWNVLINGYCRAKDMHMATTLFRSMPERNSGSWSTLIKGYVDSGELNRAKQLFELMP 254
Query: 233 -------------------------------SKGISPDSISYIAVLSACSHLGWVEKGFY 261
KG+ P+ + AVLSACS G + G
Sbjct: 255 EKNVVSWTTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLSACSKSGALGSGIR 314
Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
+ D +GIK + +VD+ + G L+ A ++M K D + W ++ VH
Sbjct: 315 IHGYILD-NGIKLDRAIGTALVDMYAKCGELDCAATVFSNMNHK-DILSWTAMIQGWAVH 372
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/263 (21%), Positives = 112/263 (42%), Gaps = 21/263 (7%)
Query: 119 RPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCA 178
+PK + A P+ + +SL+ AC +L + V++ I ++ + L S + A
Sbjct: 9 KPKSSPAKIYFPADRQASPDESHFISLIHACKDTASLRH---VHAQILRRGV-LSSRVAA 64
Query: 179 ALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISP 238
L+ + S D ++ +F + +++ + I GL N + F M G+ P
Sbjct: 65 QLVSCSSLLKSPDYSLSIFRNSEERNPFVLNALIRGLTENARFESSVRHFILMLRLGVKP 124
Query: 239 DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA----CMVDLLGRAGLLEE 294
D +++ VL + S L GF + +K +D + +VD+ + G L+
Sbjct: 125 DRLTFPFVLKSNSKL-----GFRWLGRALHAATLKNFVDCDSFVRLSLVDMYAKTGQLKH 179
Query: 295 AENFIASMP---MKPDNVIWGTLL-GACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSN 350
A P K +IW L+ G CR ++ M + + E + G + L
Sbjct: 180 AFQVFEESPDRIKKESILIWNVLINGYCRA-KDMHMATTLFRSMPERNS---GSWSTLIK 235
Query: 351 IYVETLKGENAEEVRKTMRKRKI 373
YV++ + A+++ + M ++ +
Sbjct: 236 GYVDSGELNRAKQLFELMPEKNV 258
>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2
SV=1
Length = 659
Score = 410 bits (1053), Expect = e-113, Method: Compositional matrix adjust.
Identities = 214/555 (38%), Positives = 330/555 (59%), Gaps = 50/555 (9%)
Query: 7 FAY--DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKL 64
F Y D+FV ++LI YS CG++ DAR VFDE ++VSW SMI GY NG L+ + L
Sbjct: 105 FGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSL 164
Query: 65 F-DKMPQRND---------VSWNSILGGLVRF---------------------------- 86
F D + ND + S++ R
Sbjct: 165 FKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTL 224
Query: 87 ---------GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM-QSLDLE 136
G V A ++F+Q+ + VS+ ++S +AQ+G EA +FR + ++ +
Sbjct: 225 LDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVT 284
Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
N+ L ++L A + GAL G ++ + + ++ D I+ ++IDMY KCG ++ A +
Sbjct: 285 FNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKA 344
Query: 197 FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWV 256
F +K+V ++T+ I G M+GH+ +A ELF M G+ P+ I++++VL+ACSH G
Sbjct: 345 FDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLH 404
Query: 257 EKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLG 316
+G+ +F++M G++P L+HY CMVDLLGRAG L++A + I M MKPD++IW +LL
Sbjct: 405 VEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLA 464
Query: 317 ACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRA 376
ACR+H+N E+ + L E D ++ G Y+LLS+IY + + ++ E VR M+ R + +
Sbjct: 465 ACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKP 524
Query: 377 PGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEK 436
PG SL+EL+G VH FL GD H + ++IY+F E+ +K+ GY T SV D++EEEK
Sbjct: 525 PGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEK 584
Query: 437 ETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKH 496
E + HSEKLA+AFG++ T PGS + +VKN+R+CSDCH+ +KL+SK+ R+ +RD K
Sbjct: 585 EMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKR 644
Query: 497 YHHFEDGSCSCLEYW 511
+HHF+DG CSC +YW
Sbjct: 645 FHHFKDGGCSCGDYW 659
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 86/166 (51%), Gaps = 7/166 (4%)
Query: 95 VFNQ-MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153
+FN+ + K + SW +I+ A++G EAL F M+ L L P + + AC+ L
Sbjct: 31 LFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLF 90
Query: 154 ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIF 213
+ G + + D + +ALI MY+ CG ++ A +VF +++ ++TS I
Sbjct: 91 DIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIR 150
Query: 214 GLAMNGHSIEAFELF------ENMKSKGISPDSISYIAVLSACSHL 253
G +NG++++A LF EN + DS+ ++V+SACS +
Sbjct: 151 GYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRV 196
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 76/157 (48%), Gaps = 12/157 (7%)
Query: 2 VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
V++ DV V S+I Y CGRV AR FD + +V SW +MI GY +G +
Sbjct: 313 VIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKA 372
Query: 62 LKLFDKM----PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLIS 112
L+LF M + N +++ S+L G + R FN M R L + ++
Sbjct: 373 LELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVD 432
Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
+ G ++A L + M+ ++P+S I SLL+AC
Sbjct: 433 LLGRAGFLQKAYDLIQRMK---MKPDSIIWSSLLAAC 466
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 407 bits (1045), Expect = e-112, Method: Compositional matrix adjust.
Identities = 202/508 (39%), Positives = 314/508 (61%), Gaps = 16/508 (3%)
Query: 16 SLIQFYSVCGRVRDARWV-----------FDESDDLDVVSWNSMINGYVRNGEILEGLKL 64
S++ S C ++R+ W F+ D++ N++I+ Y++ ++
Sbjct: 339 SMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNI----CNALIDMYMKCHRQDTAFRI 394
Query: 65 FDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEAL 124
FD+M + V+WNSI+ G V G VD A F MP++++VSW +ISG Q +EA+
Sbjct: 395 FDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAI 454
Query: 125 ALFREMQSLD-LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDM 183
+F MQS + + + ++S+ SAC LGALD W+Y YI+K I+LD L L+DM
Sbjct: 455 EVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDM 514
Query: 184 YAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISY 243
+++CG + AM +F+S ++DVSA+T+AI +AM G++ A ELF++M +G+ PD +++
Sbjct: 515 FSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAF 574
Query: 244 IAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP 303
+ L+ACSH G V++G F+SM +HG+ PE HY CMVDLLGRAGLLEEA I MP
Sbjct: 575 VGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMP 634
Query: 304 MKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEE 363
M+P++VIW +LL ACRV N EM + G Y+LLSN+Y + + +
Sbjct: 635 MEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAK 694
Query: 364 VRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVE 423
VR +M+++ +++ PG S I++ G HEF +GD SH + I +E+ ++ + G+ +
Sbjct: 695 VRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPD 754
Query: 424 TRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSK 483
+V+ D++E+EK ++ HSEKLA+A+GLI + G+ IRIVKN+R+CSDCHS K SK
Sbjct: 755 LSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASK 814
Query: 484 VFKRKISIRDRKHYHHFEDGSCSCLEYW 511
V+ R+I +RD +H+ G CSC ++W
Sbjct: 815 VYNREIILRDNNRFHYIRQGKCSCGDFW 842
Score = 145 bits (366), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 112/417 (26%), Positives = 187/417 (44%), Gaps = 78/417 (18%)
Query: 1 MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
++VK +A D+FV+NSL+ FY+ CG + AR VFDE + +VVSW SMI GY R +
Sbjct: 159 LIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKD 218
Query: 61 GLKLFDKMPQRNDVSWNSI------------------------------------LGGLV 84
+ LF +M + +V+ NS+ + LV
Sbjct: 219 AVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALV 278
Query: 85 ----RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
+ ++D A R+F++ +L + S + + G +EAL +F M + P+
Sbjct: 279 DMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRI 338
Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
++S +S+C+QL + +G + Y+ + + +C ALIDMY KC D A ++F
Sbjct: 339 SMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRM 398
Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK-------------------------- 234
+K V + S + G NG A+E FE M K
Sbjct: 399 SNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFC 458
Query: 235 ------GISPDSISYIAVLSACSHLGWVE--KGFYYFHSMFDVHGIKPELDHYACMVDLL 286
G++ D ++ +++ SAC HLG ++ K YY+ + +GI+ ++ +VD+
Sbjct: 459 SMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYY---IEKNGIQLDVRLGTTLVDMF 515
Query: 287 GRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDG 343
R G E A + S+ + D W +GA + NAE + + +IE DG
Sbjct: 516 SRCGDPESAMSIFNSLTNR-DVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDG 571
Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/262 (30%), Positives = 145/262 (55%), Gaps = 10/262 (3%)
Query: 2 VVKNSFAYDV-FVKNSLIQFYSVCGRVRDARWVF----DESDDLDVVSWNSMINGYVRNG 56
V +NS +Y F+ NSLI+ Y+ G +A +F + D ++ ++ ++
Sbjct: 89 VFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSR 148
Query: 57 EILEGLK---LFDKMPQRNDV-SWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLIS 112
G++ L KM D+ NS++ G +D A +VF++M +R++VSW +I
Sbjct: 149 AKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMIC 208
Query: 113 GFAQNGRPKEALALF-REMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK 171
G+A+ K+A+ LF R ++ ++ PNS +V ++SACA+L L+ G VY++I+ I+
Sbjct: 209 GYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIE 268
Query: 172 LDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM 231
++ ++ +AL+DMY KC +ID+A ++F YG ++ + G + EA +F M
Sbjct: 269 VNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLM 328
Query: 232 KSKGISPDSISYIAVLSACSHL 253
G+ PD IS ++ +S+CS L
Sbjct: 329 MDSGVRPDRISMLSAISSCSQL 350
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 75/174 (43%), Gaps = 12/174 (6%)
Query: 2 VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
+ KN DV + +L+ +S CG A +F+ + DV +W + I G
Sbjct: 496 IEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERA 555
Query: 62 LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLIS 112
++LFD M ++ + V++ L G V +F M K VS + ++
Sbjct: 556 IELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVD 615
Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQ 166
+ G +EA+ L +M +EPN I SLL+AC G ++ + IQ
Sbjct: 616 LLGRAGLLEEAVQLIEDMP---MEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQ 666
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 405 bits (1042), Expect = e-112, Method: Compositional matrix adjust.
Identities = 208/520 (40%), Positives = 310/520 (59%), Gaps = 11/520 (2%)
Query: 3 VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
K + +FV N L+ Y CG + +AR V DE DVVSWNS++ GY +N + L
Sbjct: 167 TKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDAL 226
Query: 63 KLFDKMPQ---RNDVSWNSILGGLVRFGSVDDACRV---FNQMPKRSLVSWVVLISGFAQ 116
++ +M +D + L V + ++ V F +M K+SLVSW V+I + +
Sbjct: 227 EVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMK 286
Query: 117 NGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSIL 176
N P EA+ L+ M++ EP++ + S+L AC AL G ++ YI++K + + +L
Sbjct: 287 NAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLL 346
Query: 177 CAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGI 236
ALIDMYAKCG ++ A VF + +DV ++T+ I +G +A LF ++ G+
Sbjct: 347 ENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGL 406
Query: 237 SPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAE 296
PDSI+++ L+ACSH G +E+G F M D + I P L+H ACMVDLLGRAG ++EA
Sbjct: 407 VPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAY 466
Query: 297 NFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETL 356
FI M M+P+ +WG LLGACRVH + ++G + L + G Y+LLSNIY +
Sbjct: 467 RFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAG 526
Query: 357 KGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIK 416
+ E +R M+ + +K+ PG S +E++ ++H FL GDRSH ++ EIY+ + +VKK+K
Sbjct: 527 RWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVKKMK 586
Query: 417 NYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTK-----PGSVIRIVKNIRIC 471
GY ++ S + D+EEE+KET + HSEKLA+ F L+ TK + IRI KN+RIC
Sbjct: 587 ELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTKEEEEDSNNTIRITKNLRIC 646
Query: 472 SDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
DCH A KL+S++ R+I IRD +H F G CSC +YW
Sbjct: 647 GDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCGDYW 686
Score = 85.5 bits (210), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 81/319 (25%), Positives = 144/319 (45%), Gaps = 30/319 (9%)
Query: 73 DVSWNSILG-GLVR-FGSVDD---ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALF 127
D+ NS LG L+R + S+ D A +VF+++P+R+++ V+I + NG E + +F
Sbjct: 69 DLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVF 128
Query: 128 REMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC 187
M ++ P+ +L AC+ G + G ++ K + + L+ MY KC
Sbjct: 129 GTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKC 188
Query: 188 GSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVL 247
G + A V +DV ++ S + G A N +A E+ M+S IS D+ + ++L
Sbjct: 189 GFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLL 248
Query: 248 SACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP---M 304
A S+ + Y MF G K L + M+ + + + EA + M
Sbjct: 249 PAVSNT--TTENVMYVKDMFFKMG-KKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGF 305
Query: 305 KPDNVIWGTLLGAC----------RVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVE 354
+PD V ++L AC ++H E + I N+L+E+ L ++Y +
Sbjct: 306 EPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLEN---------ALIDMYAK 356
Query: 355 TLKGENAEEVRKTMRKRKI 373
E A +V + M+ R +
Sbjct: 357 CGCLEKARDVFENMKSRDV 375
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 2/155 (1%)
Query: 161 VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGH 220
V+S I + ++ +S L L+ YA + A +VF +++V I NG
Sbjct: 61 VHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGF 120
Query: 221 SIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA 280
E ++F M + PD ++ VL ACS G + G S V G+ L
Sbjct: 121 YGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKV-GLSSTLFVGN 179
Query: 281 CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
+V + G+ G L EA + M + D V W +L+
Sbjct: 180 GLVSMYGKCGFLSEARLVLDEMSRR-DVVSWNSLV 213
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 398 bits (1022), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/549 (37%), Positives = 316/549 (57%), Gaps = 40/549 (7%)
Query: 2 VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
++++ F +D+ + N+L+ Y+ CG + +AR VF++ D V+W ++I+GY ++ +
Sbjct: 86 ILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDA 145
Query: 62 LKLFDKMPQ----RNDVSWNSILGG----------------------------------- 82
L F++M + N+ + +S++
Sbjct: 146 LLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDL 205
Query: 83 LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
R+G +DDA VF+ + R+ VSW LI+G A+ ++AL LF+ M P+
Sbjct: 206 YTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSY 265
Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
SL AC+ G L+ G WV++Y+ K KL + L+DMYAK GSI A ++F
Sbjct: 266 ASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAK 325
Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
+DV ++ S + A +G EA FE M+ GI P+ IS+++VL+ACSH G +++G++Y
Sbjct: 326 RDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHY 385
Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
+ M GI PE HY +VDLLGRAG L A FI MP++P IW LL ACR+H+
Sbjct: 386 YELM-KKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHK 444
Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
N E+G + E D + G +++L NIY + +A VRK M++ +K+ P CS +
Sbjct: 445 NTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWV 504
Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
E++ +H F+A D H + +EI + WEE++ KIK GY +T V+ ++++E+E + Y
Sbjct: 505 EIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQY 564
Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
HSEK+ALAF L+ T PGS I I KNIR+C DCH+A+KL SKV R+I +RD +HHF+D
Sbjct: 565 HSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKD 624
Query: 503 GSCSCLEYW 511
G+CSC +YW
Sbjct: 625 GNCSCKDYW 633
Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 136/274 (49%), Gaps = 8/274 (2%)
Query: 48 MINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSW 107
+I G + + IL+ + D V N++L + GS+++A +VF +MP+R V+W
Sbjct: 76 LIQGRIVHAHILQSIFRHDI------VMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTW 129
Query: 108 VVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK 167
LISG++Q+ RP +AL F +M PN L S++ A A G+ ++ + K
Sbjct: 130 TTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVK 189
Query: 168 KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFEL 227
+ + +AL+D+Y + G +D A VF + ++ ++ + I G A + +A EL
Sbjct: 190 CGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALEL 249
Query: 228 FENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLG 287
F+ M G P SY ++ ACS G++E+G + H+ G K ++D+
Sbjct: 250 FQGMLRDGFRPSHFSYASLFGACSSTGFLEQG-KWVHAYMIKSGEKLVAFAGNTLLDMYA 308
Query: 288 RAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
++G + +A + K D V W +LL A H
Sbjct: 309 KSGSIHDARKIFDRL-AKRDVVSWNSLLTAYAQH 341
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 80/182 (43%), Gaps = 18/182 (9%)
Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
+LL C L G V+++I + + D ++ L++MYAKCGS++ A +VF +
Sbjct: 65 TLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQR 124
Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA--------CSHLGW 255
D +T+ I G + + +A F M G SP+ + +V+ A C H
Sbjct: 125 DFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGH--- 181
Query: 256 VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
H G + + ++DL R GL+++A+ ++ + D V W L+
Sbjct: 182 ------QLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRND-VSWNALI 234
Query: 316 GA 317
Sbjct: 235 AG 236
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 398 bits (1022), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/526 (38%), Positives = 313/526 (59%), Gaps = 48/526 (9%)
Query: 30 ARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSV 89
AR +F+ + D+V +NSM GY R LE LF ++ + + N L++ +V
Sbjct: 82 ARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAV 141
Query: 90 ---------------------------------------DDACRVFNQMPKRSLVSWVVL 110
D A VF+++ + +V + +
Sbjct: 142 AKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAM 201
Query: 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK--- 167
I+G+A+ RP EAL+LFREMQ L+PN L+S+LS+CA LG+LD G W++ Y +K
Sbjct: 202 ITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSF 261
Query: 168 -KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFE 226
K +K+++ ALIDM+AKCGS+D A+ +F KD A+++ I A +G + ++
Sbjct: 262 CKYVKVNT----ALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSML 317
Query: 227 LFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLL 286
+FE M+S+ + PD I+++ +L+ACSH G VE+G YF M GI P + HY MVDLL
Sbjct: 318 MFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLL 377
Query: 287 GRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYI 346
RAG LE+A FI +P+ P ++W LL AC H N ++ +++ + E D +H G Y+
Sbjct: 378 SRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYV 437
Query: 347 LLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQ 406
+LSN+Y K E + +RK M+ RK + PGCS IE++ VVHEF +GD T ++++
Sbjct: 438 ILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHR 497
Query: 407 FWEEIVKKIKNYGYNVETRSVMF-DIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIV 465
+E+VK++K GY +T V+ ++ ++EKE + YHSEKLA+ FGL+ T PG+ IR+V
Sbjct: 498 ALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVV 557
Query: 466 KNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
KN+R+C DCH+A KL+S +F RK+ +RD + +HHFEDG CSC ++W
Sbjct: 558 KNLRVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 121/257 (47%), Gaps = 6/257 (2%)
Query: 87 GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLL 146
S+ A +F M + +V + + G+++ P E +LF E+ + P++ SLL
Sbjct: 77 SSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLL 136
Query: 147 SACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
ACA AL+ G ++ K + + +C LI+MY +C +D A VF + V
Sbjct: 137 KACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVV 196
Query: 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266
Y + I G A EA LF M+ K + P+ I+ ++VLS+C+ LG ++ G + H
Sbjct: 197 CYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLG-KWIHKY 255
Query: 267 FDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAE- 325
H + ++D+ + G L++A + M K D W ++ A H AE
Sbjct: 256 AKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYK-DTQAWSAMIVAYANHGKAEK 314
Query: 326 ---MGQRIGNMLIESDQ 339
M +R+ + ++ D+
Sbjct: 315 SMLMFERMRSENVQPDE 331
Score = 85.5 bits (210), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 107/226 (47%), Gaps = 40/226 (17%)
Query: 10 DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
+V+V +LI Y+ C V AR VFD + VV +N+MI GY R E L LF +M
Sbjct: 163 NVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQ 222
Query: 70 QR----NDVSWNSILGG-----------------------------------LVRFGSVD 90
+ N+++ S+L + GS+D
Sbjct: 223 GKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLD 282
Query: 91 DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
DA +F +M + +W +I +A +G+ ++++ +F M+S +++P+ + LL+AC+
Sbjct: 283 DAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACS 342
Query: 151 QLGALDYGNWVYSYIQKKCIKLDSIL-CAALIDMYAKCGSIDLAMQ 195
G ++ G +S + K + SI +++D+ ++ G+++ A +
Sbjct: 343 HTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYE 388
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 83/171 (48%), Gaps = 12/171 (7%)
Query: 4 KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
K+SF V V +LI ++ CG + DA +F++ D +W++MI Y +G+ + +
Sbjct: 258 KHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSML 317
Query: 64 LFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLISGF 114
+F++M Q +++++ +L G V++ + F+QM + S+ + ++
Sbjct: 318 MFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLL 377
Query: 115 AQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
++ G ++A + + L + P + LL+AC+ LD V I
Sbjct: 378 SRAGNLEDA---YEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERI 425
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 397 bits (1021), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/548 (35%), Positives = 319/548 (58%), Gaps = 40/548 (7%)
Query: 3 VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
+++ F V + +L+ Y+ CG + AR +FD + +VVSWNSMI+ YV+N E +
Sbjct: 263 MRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAM 322
Query: 63 KLFDKM------PQ---------------------------------RNDVSWNSILGGL 83
+F KM P RN NS++
Sbjct: 323 LIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMY 382
Query: 84 VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
+ VD A +F ++ R+LVSW +I GFAQNGRP +AL F +M+S ++P++ V
Sbjct: 383 CKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYV 442
Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203
S+++A A+L + W++ + + C+ + + AL+DMYAKCG+I +A +F ++
Sbjct: 443 SVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSER 502
Query: 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263
V+ + + I G +G A ELFE M+ I P+ +++++V+SACSH G VE G F
Sbjct: 503 HVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCF 562
Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
+ M + + I+ +DHY MVDLLGRAG L EA +FI MP+KP ++G +LGAC++H+N
Sbjct: 563 YMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKN 622
Query: 324 AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE 383
++ L E + + G ++LL+NIY E +VR +M ++ +++ PGCS++E
Sbjct: 623 VNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVE 682
Query: 384 LDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYH 443
+ VH F +G +H +++IY F E+++ IK GY +T V+ +E + KE ++ H
Sbjct: 683 IKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL-GVENDVKEQLLSTH 741
Query: 444 SEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDG 503
SEKLA++FGL+ T G+ I + KN+R+C+DCH+A K +S V R+I +RD + +HHF++G
Sbjct: 742 SEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNG 801
Query: 504 SCSCLEYW 511
+CSC +YW
Sbjct: 802 ACSCGDYW 809
Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 99/409 (24%), Positives = 186/409 (45%), Gaps = 72/409 (17%)
Query: 1 MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
++VK+ F+ D+F L Y+ C +V +AR VFD + D+VSWN+++ GY +NG
Sbjct: 160 LLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARM 219
Query: 61 GLKLFDKMPQRN-DVSWNSILGGL------------------------------------ 83
L++ M + N S+ +I+ L
Sbjct: 220 ALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVD 279
Query: 84 --VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
+ GS++ A ++F+ M +R++VSW +I + QN PKEA+ +F++M ++P
Sbjct: 280 MYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVS 339
Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
++ L ACA LG L+ G +++ + + + + +LI MY KC +D A +F
Sbjct: 340 VMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQ 399
Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS------HLGW 255
+ + ++ + I G A NG I+A F M+S+ + PD+ +Y++V++A + H W
Sbjct: 400 SRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKW 459
Query: 256 V---------EKGFYYFHSMFDVHG---------------IKPELDHYACMVDLLGRAGL 291
+ +K + ++ D++ + + + M+D G G
Sbjct: 460 IHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGF 519
Query: 292 LEEAENFIASM---PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIES 337
+ A M +KP+ V + +++ AC E G + M+ E+
Sbjct: 520 GKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKEN 568
Score = 128 bits (322), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 148/300 (49%), Gaps = 39/300 (13%)
Query: 1 MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
+V KN + F + L+ + G V +A VF+ D V +++M+ G+ + ++ +
Sbjct: 59 LVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDK 118
Query: 61 GLKLFDKM------PQRNDVSW--------------NSILGGLVRFG------------- 87
L+ F +M P + ++ I G LV+ G
Sbjct: 119 ALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLEN 178
Query: 88 ------SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
V++A +VF++MP+R LVSW +++G++QNG + AL + + M +L+P+
Sbjct: 179 MYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFIT 238
Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
+VS+L A + L + G ++ Y + + AL+DMYAKCGS++ A Q+F
Sbjct: 239 IVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGML 298
Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
+++V ++ S I N + EA +F+ M +G+ P +S + L AC+ LG +E+G +
Sbjct: 299 ERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRF 358
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 111/233 (47%), Gaps = 2/233 (0%)
Query: 85 RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
R+GSVD+A RVF + + V + ++ GFA+ +AL F M+ D+EP
Sbjct: 81 RYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTY 140
Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
LL C L G ++ + K LD L +MYAKC ++ A +VF ++D
Sbjct: 141 LLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERD 200
Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
+ ++ + + G + NG + A E+ ++M + + P I+ ++VL A S L + G H
Sbjct: 201 LVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVG-KEIH 259
Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
G ++ +VD+ + G LE A M ++ + V W +++ A
Sbjct: 260 GYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGM-LERNVVSWNSMIDA 311
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 78/158 (49%), Gaps = 12/158 (7%)
Query: 1 MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
+V+++ +VFV +L+ Y+ CG + AR +FD + V +WN+MI+GY +G
Sbjct: 463 VVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKA 522
Query: 61 GLKLFDKMP----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLI 111
L+LF++M + N V++ S++ G V+ + F M + S+ + ++
Sbjct: 523 ALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMV 582
Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
+ GR EA +M ++P + ++L AC
Sbjct: 583 DLLGRAGRLNEAWDFIMQMP---VKPAVNVYGAMLGAC 617
Score = 37.4 bits (85), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 38/194 (19%), Positives = 73/194 (37%), Gaps = 5/194 (2%)
Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
LL C+ L L + + K + + L+ ++ + GS+D A +VF K
Sbjct: 43 LLERCSSLKEL---RQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKL 99
Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
Y + + G A +A + F M+ + P ++ +L C + G H
Sbjct: 100 NVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVG-KEIH 158
Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
+ G +L + ++ + + EA MP + D V W T++ + A
Sbjct: 159 GLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPER-DLVSWNTIVAGYSQNGMA 217
Query: 325 EMGQRIGNMLIESD 338
M + + E +
Sbjct: 218 RMALEMVKSMCEEN 231
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 395 bits (1016), Expect = e-109, Method: Compositional matrix adjust.
Identities = 192/524 (36%), Positives = 318/524 (60%), Gaps = 39/524 (7%)
Query: 27 VRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP----QRNDVSWNSIL-- 80
+ R VF+ DVVS+N++I GY ++G + L++ +M + + + +S+L
Sbjct: 192 IDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPI 251
Query: 81 --------------GGLVRFG-------------------SVDDACRVFNQMPKRSLVSW 107
G ++R G ++D+ RVF+++ R +SW
Sbjct: 252 FSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISW 311
Query: 108 VVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK 167
L++G+ QNGR EAL LFR+M + ++P + S++ ACA L L G ++ Y+ +
Sbjct: 312 NSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLR 371
Query: 168 KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFEL 227
+ + +AL+DMY+KCG+I A ++F D ++T+ I G A++GH EA L
Sbjct: 372 GGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSL 431
Query: 228 FENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLG 287
FE MK +G+ P+ ++++AVL+ACSH+G V++ + YF+SM V+G+ EL+HYA + DLLG
Sbjct: 432 FEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLG 491
Query: 288 RAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYIL 347
RAG LEEA NFI+ M ++P +W TLL +C VH+N E+ +++ + D + G Y+L
Sbjct: 492 RAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVL 551
Query: 348 LSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQF 407
+ N+Y + + ++R MRK+ +++ P CS IE+ H F++GDRSH +I +F
Sbjct: 552 MCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEF 611
Query: 408 WEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKN 467
+ ++++++ GY +T V+ D++EE K ++ HSE+LA+AFG+I T+PG+ IR+ KN
Sbjct: 612 LKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKN 671
Query: 468 IRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
IRIC+DCH A+K +SK+ +R+I +RD +HHF G+CSC +YW
Sbjct: 672 IRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715
Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/289 (28%), Positives = 150/289 (51%), Gaps = 9/289 (3%)
Query: 39 DLDVVSWNSMINGYVR---NGEILEGLKLFDKMPQRNDVSWNSILGG---LVRFGSVDDA 92
D D+ + N+++N Y + G + +FD+MPQR S + + ++ FG +D
Sbjct: 137 DCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFG-IDSV 195
Query: 93 CRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQL 152
RVF MP++ +VS+ +I+G+AQ+G ++AL + REM + DL+P+S L S+L ++
Sbjct: 196 RRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEY 255
Query: 153 GALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAI 212
+ G ++ Y+ +K I D + ++L+DMYAK I+ + +VF +D ++ S +
Sbjct: 256 VDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLV 315
Query: 213 FGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGI 272
G NG EA LF M + + P ++++ +V+ AC+HL + G H G
Sbjct: 316 AGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLG-KQLHGYVLRGGF 374
Query: 273 KPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
+ + +VD+ + G ++ A M + D V W ++ +H
Sbjct: 375 GSNIFIASALVDMYSKCGNIKAARKIFDRMNV-LDEVSWTAIIMGHALH 422
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 137/292 (46%), Gaps = 47/292 (16%)
Query: 2 VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
V++ DV++ +SL+ Y+ R+ D+ VF D +SWNS++ GYV+NG E
Sbjct: 268 VIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEA 327
Query: 62 LKLFDKM----PQRNDVSWNSIL---------------------GGL------------- 83
L+LF +M + V+++S++ GG
Sbjct: 328 LRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDM 387
Query: 84 -VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
+ G++ A ++F++M VSW +I G A +G EA++LF EM+ ++PN
Sbjct: 388 YSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAF 447
Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSIL--CAALIDMYAKCGSIDLAMQVFHSY 200
V++L+AC+ +G +D W Y K L+ L AA+ D+ + G ++ A +++
Sbjct: 448 VAVLTACSHVGLVDEA-WGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEA----YNF 502
Query: 201 GDKDVSAYTSAIFGLAMNGHSI-EAFELFENMKSKGISPDSISYIAVLSACS 251
K T +++ ++ S+ + EL E + K + DS + A + C+
Sbjct: 503 ISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCN 554
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 100/199 (50%), Gaps = 19/199 (9%)
Query: 2 VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
V++ F ++F+ ++L+ YS CG ++ AR +FD + LD VSW ++I G+ +G E
Sbjct: 369 VLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEA 428
Query: 62 LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPK-----RSLVSWVVLIS 112
+ LF++M ++ N V++ ++L G VD+A FN M K + L + +
Sbjct: 429 VSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVAD 488
Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKL 172
+ G+ +EA +M +EP ++ +LLS+C+ L+ V +K +
Sbjct: 489 LLGRAGKLEEAYNFISKMC---VEPTGSVWSTLLSSCSVHKNLELAEKV----AEKIFTV 541
Query: 173 DSILCAALI---DMYAKCG 188
DS A + +MYA G
Sbjct: 542 DSENMGAYVLMCNMYASNG 560
Score = 65.9 bits (159), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 106/258 (41%), Gaps = 38/258 (14%)
Query: 96 FNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGAL 155
F + +++W +I F +ALA F EM++ P+ + S+L +C + L
Sbjct: 62 FKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDL 121
Query: 156 DYGNWVYSYIQKKCIKLDSILCAALIDMYAKC---GS----------------------- 189
+G V+ +I + + D AL++MYAK GS
Sbjct: 122 RFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDV 181
Query: 190 ----------IDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
ID +VF KDV +Y + I G A +G +A + M + + PD
Sbjct: 182 KAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPD 241
Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI 299
S + +VL S V KG H GI ++ + +VD+ ++ +E++E
Sbjct: 242 SFTLSSVLPIFSEYVDVIKG-KEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVF 300
Query: 300 ASMPMKPDNVIWGTLLGA 317
+ + + D + W +L+
Sbjct: 301 SRLYCR-DGISWNSLVAG 317
>sp|Q9SN85|PP267_ARATH Pentatricopeptide repeat-containing protein At3g47530
OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1
Length = 591
Score = 395 bits (1015), Expect = e-109, Method: Compositional matrix adjust.
Identities = 205/468 (43%), Positives = 296/468 (63%), Gaps = 9/468 (1%)
Query: 53 VRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSV----DDACRVFNQMPKRSLVSWV 108
+++G++L GL++ K+ +S + ++ L+ S DAC+VF+++PKR VSW
Sbjct: 124 IKSGDLLGGLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWN 183
Query: 109 VLISGFAQNGRPKEALALFREMQS-LD--LEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
VL S + +N R ++ L LF +M++ +D ++P+ + L ACA LGALD+G V+ +I
Sbjct: 184 VLFSCYLRNKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFI 243
Query: 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAF 225
+ + L L+ MY++CGS+D A QVF+ +++V ++T+ I GLAMNG EA
Sbjct: 244 DENGLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAI 303
Query: 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH-GIKPELDHYACMVD 284
E F M GISP+ + +LSACSH G V +G +F M IKP L HY C+VD
Sbjct: 304 EAFNEMLKFGISPEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVVD 363
Query: 285 LLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGR 344
LLGRA LL++A + I SM MKPD+ IW TLLGACRVH + E+G+R+ + LIE G
Sbjct: 364 LLGRARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGDVELGERVISHLIELKAEEAGD 423
Query: 345 YILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEI 404
Y+LL N Y K E E+R M++++I PGCS IEL G VHEF+ D SH + +EI
Sbjct: 424 YVLLLNTYSTVGKWEKVTELRSLMKEKRIHTKPGCSAIELQGTVHEFIVDDVSHPRKEEI 483
Query: 405 YQFWEEIVKKIKNYGYNVETRSVMFDIE-EEEKETVIGYHSEKLALAFGLICTKPGSVIR 463
Y+ EI +++K GY E S + ++E EEEK + YHSEKLA+AFG++ T PG+ IR
Sbjct: 484 YKMLAEINQQLKIAGYVAEITSELHNLESEEEKGYALRYHSEKLAIAFGILVTPPGTTIR 543
Query: 464 IVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
+ KN+R C DCH+ K VS V+ R + +RDR +HHF+ GSCSC ++W
Sbjct: 544 VTKNLRTCVDCHNFAKFVSDVYDRIVIVRDRSRFHHFKGGSCSCNDFW 591
Score = 96.7 bits (239), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 120/304 (39%), Gaps = 82/304 (26%)
Query: 2 VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
+ + F D + +L+ YS C DA VFDE D VSWN + + Y+RN +
Sbjct: 139 IFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNVLFSCYLRNKRTRDV 198
Query: 62 LKLFDKMPQRNDVSW--------------------------------------------N 77
L LFDKM +NDV N
Sbjct: 199 LVLFDKM--KNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDENGLSGALNLSN 256
Query: 78 SILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEP 137
+++ R GS+D A +VF M +R++VSW LISG A NG KEA+ F EM + P
Sbjct: 257 TLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAIEAFNEMLKFGISP 316
Query: 138 NSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSIL--CAALIDMYAKCGSIDLAMQ 195
L LLSAC+ G + G + ++ K+ L ++D+ + +D
Sbjct: 317 EEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVVDLLGRARLLD---- 372
Query: 196 VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGW 255
+A+ L ++M+ K PDS + +L AC G
Sbjct: 373 ---------------------------KAYSLIKSMEMK---PDSTIWRTLLGACRVHGD 402
Query: 256 VEKG 259
VE G
Sbjct: 403 VELG 406
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 106/236 (44%), Gaps = 12/236 (5%)
Query: 89 VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQ---SLDLEPNSAILVSL 145
++ +CRVF+Q +L +I F+ + P E LFR ++ SL P S+
Sbjct: 62 INYSCRVFSQRLNPTLSHCNTMIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFA-- 119
Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
L C + G L G ++ I DS+L L+D+Y+ C + A +VF +D
Sbjct: 120 LKCCIKSGDLLGGLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDT 179
Query: 206 SAYTSAIFGLAMNGHSIEAFELFENMKSK---GISPDSISYIAVLSACSHLGWVEKGFYY 262
++ N + + LF+ MK+ + PD ++ + L AC++LG ++ G
Sbjct: 180 VSWNVLFSCYLRNKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFG-KQ 238
Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVI-WGTLLGA 317
H D +G+ L+ +V + R G +++A M+ NV+ W L+
Sbjct: 239 VHDFIDENGLSGALNLSNTLVSMYSRCGSMDKAYQVFYG--MRERNVVSWTALISG 292
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 392 bits (1008), Expect = e-108, Method: Compositional matrix adjust.
Identities = 215/578 (37%), Positives = 319/578 (55%), Gaps = 76/578 (13%)
Query: 10 DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
D FV+ + Y+ CGR+ AR VFDE DVV+WN+MI Y R G + E KLF++M
Sbjct: 145 DPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMK 204
Query: 70 Q----------------------------------RNDVSWNS-ILGGLVRF----GSVD 90
NDV ++ +L LV G +D
Sbjct: 205 DSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMD 264
Query: 91 DACRVFNQMPKRSL-------------------------------VSWVVLISGFAQNGR 119
A F +M R+L V W +IS + ++
Sbjct: 265 MAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDY 324
Query: 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
P+EAL +F EM ++P+ + S++SACA LG LD WV+S I ++ + + A
Sbjct: 325 PQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNA 384
Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
LI+MYAKCG +D VF ++V +++S I L+M+G + +A LF MK + + P+
Sbjct: 385 LINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPN 444
Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI 299
++++ VL CSH G VE+G F SM D + I P+L+HY CMVDL GRA LL EA I
Sbjct: 445 EVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVI 504
Query: 300 ASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGE 359
SMP+ + VIWG+L+ ACR+H E+G+ ++E + +HDG +L+SNIY + E
Sbjct: 505 ESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWE 564
Query: 360 NAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYG 419
+ +R+ M ++ + + G S I+ +G HEFL GD+ H+++ EIY +E+V K+K G
Sbjct: 565 DVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAG 624
Query: 420 YNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGS------VIRIVKNIRICSD 473
Y + SV+ D+EEEEK+ ++ +HSEKLAL FGL+ + VIRIVKN+R+C D
Sbjct: 625 YVPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNEEKEEEKDSCGVIRIVKNLRVCED 684
Query: 474 CHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
CH KLVSKV++R+I +RDR +H +++G CSC +YW
Sbjct: 685 CHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRDYW 722
Score = 72.4 bits (176), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 5 NSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKL 64
N ++ + N+LI Y+ CG + R VF++ +VVSW+SMIN +GE + L L
Sbjct: 373 NGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSL 432
Query: 65 FDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQM-------PKRSLVSWVVLISG 113
F +M Q N+V++ +L G G V++ ++F M PK L + ++
Sbjct: 433 FARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPK--LEHYGCMVDL 490
Query: 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
F + +EAL + ++S+ + N I SL+SAC G L+ G + I
Sbjct: 491 FGRANLLREALEV---IESMPVASNVVIWGSLMSACRIHGELELGKFAAKRI 539
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 94/217 (43%), Gaps = 6/217 (2%)
Query: 92 ACRVFNQMPKRS-LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
A VF+ +P + + + +++ P+ + ++ ++ + + + +L A +
Sbjct: 63 ALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVS 122
Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
++ AL G ++ K D + +DMYA CG I+ A VF +DV + +
Sbjct: 123 KVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNT 182
Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVE--KGFYYFHSMFD 268
I G EAF+LFE MK + PD + ++SAC G + + Y F D
Sbjct: 183 MIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIEND 242
Query: 269 VHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMK 305
V + + +V + AG ++ A F M ++
Sbjct: 243 V---RMDTHLLTALVTMYAGAGCMDMAREFFRKMSVR 276
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 391 bits (1004), Expect = e-108, Method: Compositional matrix adjust.
Identities = 216/537 (40%), Positives = 303/537 (56%), Gaps = 38/537 (7%)
Query: 11 VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVR---NGEILEGLKLFDK 67
+F+ N LI Y + DA +FD+ +V+SW +MI+ Y + + + LE L L +
Sbjct: 96 MFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLR 155
Query: 68 MPQRNDV-SWNSILGG--------------------------------LVRFGSVDDACR 94
R +V +++S+L + G +DA
Sbjct: 156 DNVRPNVYTYSSVLRSCNGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALS 215
Query: 95 VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA 154
VF++M + W +I GFAQN R AL LF+ M+ A L S+L AC L
Sbjct: 216 VFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLAL 275
Query: 155 LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFG 214
L+ G + +I K D IL AL+DMY KCGS++ A++VF+ ++DV +++ I G
Sbjct: 276 LELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISG 333
Query: 215 LAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP 274
LA NG+S EA +LFE MKS G P+ I+ + VL ACSH G +E G+YYF SM ++GI P
Sbjct: 334 LAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDP 393
Query: 275 ELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNML 334
+HY CM+DLLG+AG L++A + M +PD V W TLLGACRV RN + + +
Sbjct: 394 VREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKV 453
Query: 335 IESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAG 394
I D G Y LLSNIY + K ++ EE+R MR R IK+ PGCS IE++ +H F+ G
Sbjct: 454 IALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIG 513
Query: 395 DRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLI 454
D SH + E+ + +++ ++ GY ET V+ D+E E+ E + +HSEKLALAFGL+
Sbjct: 514 DNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLM 573
Query: 455 CTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
VIRI KN+RIC DCH KL SK+ R I IRD YHHF+DG CSC +YW
Sbjct: 574 TLPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRDPIRYHHFQDGKCSCGDYW 630
Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 115/236 (48%), Gaps = 40/236 (16%)
Query: 2 VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
++K DVFV+++LI ++ G DA VFDE D + WNS+I G+ +N
Sbjct: 185 IIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVA 244
Query: 62 LKLFDKMPQRNDVSWNSILGGLVRF----------------------------------- 86
L+LF +M + ++ + L ++R
Sbjct: 245 LELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLILNNALVDMYC 304
Query: 87 --GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
GS++DA RVFNQM +R +++W +ISG AQNG +EAL LF M+S +PN +V
Sbjct: 305 KCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVG 364
Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSIL--CAALIDMYAKCGSIDLAMQVFH 198
+L AC+ G L+ G W Y KK +D + +ID+ K G +D A+++ +
Sbjct: 365 VLFACSHAGLLEDG-WYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLN 419
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 84/173 (48%), Gaps = 16/173 (9%)
Query: 10 DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM- 68
D+ + N+L+ Y CG + DA VF++ + DV++W++MI+G +NG E LKLF++M
Sbjct: 292 DLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMK 351
Query: 69 ---PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWV-----VLISGFAQNGRP 120
+ N ++ +L G ++D F M K + V +I + G+
Sbjct: 352 SSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKL 411
Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD 173
+A+ L EM+ EP++ +LL AC + + Y KK I LD
Sbjct: 412 DDAVKLLNEMEC---EPDAVTWRTLLGAC----RVQRNMVLAEYAAKKVIALD 457
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 95/214 (44%), Gaps = 10/214 (4%)
Query: 108 VVLISGFA----QNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYS 163
+L+S F Q P+ A+ +QS L +SA L+ C A+ GN +
Sbjct: 27 TLLLSEFTRLCYQRDLPR-AMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICR 85
Query: 164 YIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIE 223
++ + L LI+MY K ++ A Q+F ++V ++T+ I + +
Sbjct: 86 HLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQK 145
Query: 224 AFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMV 283
A EL M + P+ +Y +VL +C+ + V H G++ ++ + ++
Sbjct: 146 ALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVR----MLHCGIIKEGLESDVFVRSALI 201
Query: 284 DLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
D+ + G E+A + M + D ++W +++G
Sbjct: 202 DVFAKLGEPEDALSVFDEM-VTGDAIVWNSIIGG 234
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 391 bits (1004), Expect = e-108, Method: Compositional matrix adjust.
Identities = 207/534 (38%), Positives = 302/534 (56%), Gaps = 32/534 (5%)
Query: 10 DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
D F N ++ Y A+ FD D SWN+MI GY R GE+ + +LF M
Sbjct: 123 DTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMM 182
Query: 70 QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKR--------------------------- 102
++N+VSWN+++ G + G ++ A F P R
Sbjct: 183 EKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKD 242
Query: 103 -----SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDY 157
+LV+W +ISG+ +N RP++ L LFR M + PNS+ L S L C++L AL
Sbjct: 243 MTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQL 302
Query: 158 GNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAM 217
G ++ + K + D +LI MY KCG + A ++F KDV A+ + I G A
Sbjct: 303 GRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQ 362
Query: 218 NGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELD 277
+G++ +A LF M I PD I+++AVL AC+H G V G YF SM + ++P+ D
Sbjct: 363 HGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPD 422
Query: 278 HYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIES 337
HY CMVDLLGRAG LEEA I SMP +P ++GTLLGACRVH+N E+ + L++
Sbjct: 423 HYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQL 482
Query: 338 DQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRS 397
+ + Y+ L+NIY + E+ VRK M++ + + PG S IE+ VH F + DR
Sbjct: 483 NSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSSDRI 542
Query: 398 HEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTK 457
H + I++ +E+ KK+K GY E + ++EEE+KE ++ +HSEKLA+AFG I
Sbjct: 543 HPELDSIHKKLKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLP 602
Query: 458 PGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
GS I++ KN+RIC DCH A+K +S++ KR+I +RD +HHF+DGSCSC +YW
Sbjct: 603 QGSQIQVFKNLRICGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSCGDYW 656
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/326 (23%), Positives = 147/326 (45%), Gaps = 12/326 (3%)
Query: 2 VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRN-GEILE 60
+ K S +F N +I G + A VF + ++WNS++ G ++ ++E
Sbjct: 52 LTKPSDQDQIFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMME 111
Query: 61 GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
+LFD++P+ + S+N +L VR + + A F++MP + SW +I+G+A+ G
Sbjct: 112 AHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEM 171
Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
++A LF M +E N +++S + G L+ + + + + + A+
Sbjct: 172 EKARELFYSM----MEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGV----VAWTAM 223
Query: 181 IDMYAKCGSIDLAMQVFHSYG-DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
I Y K ++LA +F +K++ + + I G N + +LF M +GI P+
Sbjct: 224 ITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPN 283
Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI 299
S + L CS L ++ G H + + ++ ++ + + G L +A
Sbjct: 284 SSGLSSALLGCSELSALQLG-RQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLF 342
Query: 300 ASMPMKPDNVIWGTLLGACRVHRNAE 325
M K D V W ++ H NA+
Sbjct: 343 EVMK-KKDVVAWNAMISGYAQHGNAD 367
Score = 65.9 bits (159), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 83/160 (51%), Gaps = 16/160 (10%)
Query: 1 MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
+V K++ DV SLI Y CG + DA +F+ DVV+WN+MI+GY ++G +
Sbjct: 309 IVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADK 368
Query: 61 GLKLFDKMPQ---RND-VSWNSIL-----GGLVRFGSV--DDACRVFNQMPKRSLVSWVV 109
L LF +M R D +++ ++L GLV G + R + P+ + +V
Sbjct: 369 ALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMV 428
Query: 110 LISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
+ G A G+ +EAL L R S+ P++A+ +LL AC
Sbjct: 429 DLLGRA--GKLEEALKLIR---SMPFRPHAAVFGTLLGAC 463
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 388 bits (997), Expect = e-107, Method: Compositional matrix adjust.
Identities = 197/552 (35%), Positives = 322/552 (58%), Gaps = 44/552 (7%)
Query: 2 VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFD--ESDDLDVVSWNSMINGYVRNGEIL 59
V + F DVFV+N LI Y+ C R+ AR VF+ + +VSW ++++ Y +NGE +
Sbjct: 145 VFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPM 204
Query: 60 EGLKLFDKMPQRNDVS--WNSILGGLVRF------------------------------- 86
E L++F +M ++ DV W +++ L F
Sbjct: 205 EALEIFSQM-RKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISL 263
Query: 87 -------GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS 139
G V A +F++M +L+ W +ISG+A+NG +EA+ +F EM + D+ P++
Sbjct: 264 NTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDT 323
Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
+ S +SACAQ+G+L+ +Y Y+ + + D + +ALIDM+AKCGS++ A VF
Sbjct: 324 ISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDR 383
Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
D+DV +++ I G ++G + EA L+ M+ G+ P+ ++++ +L AC+H G V +G
Sbjct: 384 TLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREG 443
Query: 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACR 319
+++F+ M D H I P+ HYAC++DLLGRAG L++A I MP++P +WG LL AC+
Sbjct: 444 WWFFNRMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACK 502
Query: 320 VHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGC 379
HR+ E+G+ L D ++ G Y+ LSN+Y + EVR M+++ + + GC
Sbjct: 503 KHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGC 562
Query: 380 SLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETV 439
S +E+ G + F GD+SH + +EI + E I ++K G+ + + D+ +EE E
Sbjct: 563 SWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEET 622
Query: 440 IGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHH 499
+ HSE++A+A+GLI T G+ +RI KN+R C +CH+A KL+SK+ R+I +RD +HH
Sbjct: 623 LCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHH 682
Query: 500 FEDGSCSCLEYW 511
F+DG CSC +YW
Sbjct: 683 FKDGVCSCGDYW 694
Score = 139 bits (349), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 101/359 (28%), Positives = 170/359 (47%), Gaps = 51/359 (14%)
Query: 12 FVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQR 71
F+ LI S G + AR VFD+ + WN++I GY RN + L ++ M Q
Sbjct: 54 FLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNM-QL 112
Query: 72 NDVSWNSI----------------LGGLV-----RFGSVDDA------------CR---- 94
VS +S +G V R G D CR
Sbjct: 113 ARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGS 172
Query: 95 ---VFN--QMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
VF +P+R++VSW ++S +AQNG P EAL +F +M+ +D++P+ LVS+L+A
Sbjct: 173 ARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAF 232
Query: 150 AQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYT 209
L L G +++ + K ++++ L +L MYAKCG + A +F ++ +
Sbjct: 233 TCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWN 292
Query: 210 SAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDV 269
+ I G A NG++ EA ++F M +K + PD+IS + +SAC+ +G +E+ SM++
Sbjct: 293 AMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQA----RSMYEY 348
Query: 270 HGIKPELDHY---ACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAE 325
G D + ++D+ + G +E A + + D V+W ++ +H A
Sbjct: 349 VGRSDYRDDVFISSALIDMFAKCGSVEGAR-LVFDRTLDRDVVVWSAMIVGYGLHGRAR 406
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 65/149 (43%), Gaps = 2/149 (1%)
Query: 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFE 229
++ L LI + G I A QVF + + + I G + N H +A ++
Sbjct: 49 LQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYS 108
Query: 230 NMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRA 289
NM+ +SPDS ++ +L ACS L ++ G + +F + G ++ ++ L +
Sbjct: 109 NMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRL-GFDADVFVQNGLIALYAKC 167
Query: 290 GLLEEAENFIASMPMKPDNVI-WGTLLGA 317
L A +P+ ++ W ++ A
Sbjct: 168 RRLGSARTVFEGLPLPERTIVSWTAIVSA 196
>sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410
OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2
Length = 705
Score = 388 bits (996), Expect = e-107, Method: Compositional matrix adjust.
Identities = 198/535 (37%), Positives = 306/535 (57%), Gaps = 33/535 (6%)
Query: 10 DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
D + S+I GRV +AR +FDE + V++W +M+ GY +N + + K+FD MP
Sbjct: 171 DNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMP 230
Query: 70 QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQ------------- 116
++ +VSW S+L G V+ G ++DA +F MP + +++ +ISG Q
Sbjct: 231 EKTEVSWTSMLMGYVQNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDS 290
Query: 117 ------------------NGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
NG EAL LF MQ + P L+S+LS CA L +L +G
Sbjct: 291 MKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHG 350
Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
V++ + + +D + + L+ MY KCG + + +F + KD+ + S I G A +
Sbjct: 351 KQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASH 410
Query: 219 GHSIEAFELFENMKSKG-ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELD 277
G EA ++F M G P+ ++++A LSACS+ G VE+G + SM V G+KP
Sbjct: 411 GLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITA 470
Query: 278 HYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIES 337
HYACMVD+LGRAG EA I SM ++PD +WG+LLGACR H ++ + LIE
Sbjct: 471 HYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEI 530
Query: 338 DQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGD-R 396
+ + G YILLSN+Y + + E+RK M+ R ++++PGCS E++ VH F G
Sbjct: 531 EPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGIN 590
Query: 397 SHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICT 456
SH + + I + +E+ ++ GYN + + D++EEEK + YHSE+LA+A+ L+
Sbjct: 591 SHPEQESILKILDELDGLLREAGYNPDCSYALHDVDEEEKVNSLKYHSERLAVAYALLKL 650
Query: 457 KPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
G IR++KN+R+CSDCH+A+K++SKV +R+I +RD +HHF +G CSC +YW
Sbjct: 651 SEGIPIRVMKNLRVCSDCHTAIKIISKVKEREIILRDANRFHHFRNGECSCKDYW 705
Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 94/304 (30%), Positives = 155/304 (50%), Gaps = 24/304 (7%)
Query: 15 NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDV 74
N I S G++ +AR +FD D + SWNSM+ GY N + KLFD+MP RN +
Sbjct: 21 NVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNII 80
Query: 75 SWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD 134
SWN ++ G ++ G +D+A +VF+ MP+R++VSW L+ G+ NG+ A +LF +M
Sbjct: 81 SWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMP--- 137
Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
E N +L Q G +D +Y I K D+I ++I K G +D A
Sbjct: 138 -EKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDK----DNIARTSMIHGLCKEGRVDEAR 192
Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
++F ++ V +T+ + G N +A ++F+ M K +S+ ++L +G
Sbjct: 193 EIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEK----TEVSWTSML-----MG 243
Query: 255 WVEKG-FYYFHSMFDVHGIKPELDHYAC--MVDLLGRAGLLEEAENFIASMPMKPDNVIW 311
+V+ G +F+V +KP + AC M+ LG+ G + +A SM + D W
Sbjct: 244 YVQNGRIEDAEELFEVMPVKPVI---ACNAMISGLGQKGEIAKARRVFDSMKERND-ASW 299
Query: 312 GTLL 315
T++
Sbjct: 300 QTVI 303
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 99/200 (49%), Gaps = 20/200 (10%)
Query: 2 VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
+V+ F DV+V + L+ Y CG + ++ +FD D++ WNS+I+GY +G E
Sbjct: 357 LVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEA 416
Query: 62 LKLFDKMP-----QRNDVSWNSILGGLVRFGSVDDACRVFNQMP-----KRSLVSWVVLI 111
LK+F +MP + N+V++ + L G V++ +++ M K + ++
Sbjct: 417 LKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMV 476
Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK 171
+ GR EA+ + + S+ +EP++A+ SLL AC LD V + KK I+
Sbjct: 477 DMLGRAGRFNEAMEM---IDSMTVEPDAAVWGSLLGACRTHSQLD----VAEFCAKKLIE 529
Query: 172 LDSILCAALI---DMYAKCG 188
++ I +MYA G
Sbjct: 530 IEPENSGTYILLSNMYASQG 549
>sp|Q9ZVF4|PP140_ARATH Pentatricopeptide repeat-containing protein At2g01510,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=3
SV=1
Length = 584
Score = 384 bits (986), Expect = e-106, Method: Compositional matrix adjust.
Identities = 210/552 (38%), Positives = 314/552 (56%), Gaps = 41/552 (7%)
Query: 1 MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
+V++ F+ + L++ V G + AR VFDE + WN++ GYVRN E
Sbjct: 33 IVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFKGYVRNQLPFE 92
Query: 61 GLKLFDKM-------------------PQRNDVSWNSILGGLV----------------- 84
L L+ KM Q D S L V
Sbjct: 93 SLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFGCLGIVATELVM 152
Query: 85 ---RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
+FG + A +F M + LV+W ++ Q G AL F +M + ++ +S
Sbjct: 153 MYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADAVQFDSFT 212
Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
+VS+LSAC QLG+L+ G +Y +K+ I + I+ A +DM+ KCG+ + A +F
Sbjct: 213 VVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMK 272
Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
++V ++++ I G AMNG S EA LF M+++G+ P+ ++++ VLSACSH G V +G
Sbjct: 273 QRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSACSHAGLVNEGKR 332
Query: 262 YFHSMFDVH--GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACR 319
YF M + ++P +HYACMVDLLGR+GLLEEA FI MP++PD IWG LLGAC
Sbjct: 333 YFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTGIWGALLGACA 392
Query: 320 VHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGC 379
VHR+ +GQ++ ++L+E+ + ++LLSNIY K + ++VR MRK K+
Sbjct: 393 VHRDMILGQKVADVLVETAPDIGSYHVLLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAY 452
Query: 380 SLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETV 439
S +E +G +H F GD+SH +++ IY+ +EI+KKI+ GY +T SV D+E EEKE
Sbjct: 453 SSVEFEGKIHFFNRGDKSHPQSKAIYEKLDEILKKIRKMGYVPDTCSVFHDVEMEEKECS 512
Query: 440 IGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHH 499
+ +HSEKLA+AFGLI +PG IR++KN+R C DCH+ K VS + +I +RD+ +HH
Sbjct: 513 LSHHSEKLAIAFGLIKGRPGHPIRVMKNLRTCDDCHAFSKFVSSLTSTEIIMRDKNRFHH 572
Query: 500 FEDGSCSCLEYW 511
F +G CSC E+W
Sbjct: 573 FRNGVCSCKEFW 584
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 383 bits (984), Expect = e-105, Method: Compositional matrix adjust.
Identities = 202/550 (36%), Positives = 307/550 (55%), Gaps = 41/550 (7%)
Query: 3 VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
+K+ ++FV N LI Y+ GR+RD + VFD D++SWNS+I Y N + L +
Sbjct: 274 IKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAI 333
Query: 63 KLFDKM-------------------PQRNDV-------------SW--------NSILGG 82
LF +M Q D+ W N+++
Sbjct: 334 SLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVM 393
Query: 83 LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL-DLEPNSAI 141
+ G VD A VFN +P ++SW +ISG+AQNG EA+ ++ M+ ++ N
Sbjct: 394 YAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGT 453
Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
VS+L AC+Q GAL G ++ + K + LD + +L DMY KCG ++ A+ +F+
Sbjct: 454 WVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIP 513
Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
+ + + I +GH +A LF+ M +G+ PD I+++ +LSACSH G V++G +
Sbjct: 514 RVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQW 573
Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
F M +GI P L HY CMVD+ GRAG LE A FI SM ++PD IWG LL ACRVH
Sbjct: 574 CFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVH 633
Query: 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381
N ++G+ L E + H G ++LLSN+Y K E +E+R + +++ PG S
Sbjct: 634 GNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSS 693
Query: 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIG 441
+E+D V F G+++H +E+Y+ + K+K GY + R V+ D+E++EKE ++
Sbjct: 694 MEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILM 753
Query: 442 YHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501
HSE+LA+AF LI T + IRI KN+R+C DCHS K +SK+ +R+I +RD +HHF+
Sbjct: 754 SHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFK 813
Query: 502 DGSCSCLEYW 511
+G CSC +YW
Sbjct: 814 NGVCSCGDYW 823
Score = 152 bits (385), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 106/362 (29%), Positives = 179/362 (49%), Gaps = 39/362 (10%)
Query: 1 MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
+ +K F +DV+V SLI YS V +AR +FDE D+ SWN+MI+GY ++G E
Sbjct: 175 LALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKE 234
Query: 61 GLKLFDKMPQRNDVSWNSILGGLV-----------------------------------R 85
L L + + + V+ S+L
Sbjct: 235 ALTLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAE 294
Query: 86 FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
FG + D +VF++M R L+SW +I + N +P A++LF+EM+ ++P+ L+SL
Sbjct: 295 FGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISL 354
Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCA-ALIDMYAKCGSIDLAMQVFHSYGDKD 204
S +QLG + V + +K L+ I A++ MYAK G +D A VF+ + D
Sbjct: 355 ASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTD 414
Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKG-ISPDSISYIAVLSACSHLGWVEKGFYYF 263
V ++ + I G A NG + EA E++ M+ +G I+ + ++++VL ACS G + +G
Sbjct: 415 VISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGM-KL 473
Query: 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRN 323
H +G+ ++ + D+ G+ G LE+A + +P + ++V W TL+ H +
Sbjct: 474 HGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIP-RVNSVPWNTLIACHGFHGH 532
Query: 324 AE 325
E
Sbjct: 533 GE 534
Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/348 (27%), Positives = 156/348 (44%), Gaps = 52/348 (14%)
Query: 10 DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFD--- 66
+V + L+ Y G V AR FD + DV +WN MI+GY R G E ++ F
Sbjct: 85 NVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFM 144
Query: 67 ----------KMPQ-----RNDVSWNSILGGLVRFG-------------------SVDDA 92
P R + N I ++FG +V +A
Sbjct: 145 LSSGLTPDYRTFPSVLKACRTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNA 204
Query: 93 CRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQL 152
+F++MP R + SW +ISG+ Q+G KEAL L ++++D S +VSLLSAC +
Sbjct: 205 RILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAMD----SVTVVSLLSACTEA 260
Query: 153 GALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAI 212
G + G ++SY K ++ + + LID+YA+ G + +VF +D+ ++ S I
Sbjct: 261 GDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSII 320
Query: 213 FGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVE-----KGFYYFHSMF 267
+N + A LF+ M+ I PD ++ I++ S S LG + +GF F
Sbjct: 321 KAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWF 380
Query: 268 DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
++ +V + + GL++ A +P D + W T++
Sbjct: 381 -----LEDITIGNAVVVMYAKLGLVDSARAVFNWLP-NTDVISWNTII 422
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 161 VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGH 220
V IQ CI A L+++Y G++ LA F ++DV A+ I G G+
Sbjct: 79 VSKQIQNVCIS------AKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGN 132
Query: 221 S---IEAFELFENMKSKGISPDSISYIAVLSAC 250
S I F LF M S G++PD ++ +VL AC
Sbjct: 133 SSEVIRCFSLF--MLSSGLTPDYRTFPSVLKAC 163
>sp|Q9LXE8|PP386_ARATH Pentatricopeptide repeat-containing protein At5g15340,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H91 PE=2
SV=1
Length = 623
Score = 383 bits (983), Expect = e-105, Method: Compositional matrix adjust.
Identities = 198/476 (41%), Positives = 306/476 (64%), Gaps = 12/476 (2%)
Query: 46 NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
N++++ Y + G + E ++F+++ +++ VSW +L +V++ ++ VF++MP+R+ V
Sbjct: 150 NALMDMYGKCGLVSEVKRIFEELEEKSVVSWTVVLDTVVKWEGLERGREVFHEMPERNAV 209
Query: 106 SWVVLISGFAQNGRPKEALALFREMQ-SLDLEPNSAILVSLLSACAQLGALDYGNWVYSY 164
+W V+++G+ G +E L L EM N L S+LSACAQ G L G WV+ Y
Sbjct: 210 AWTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVVGRWVHVY 269
Query: 165 IQKKCIKL-------DSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAM 217
KK + + D ++ AL+DMYAKCG+ID +M VF ++V + + GLAM
Sbjct: 270 ALKKEMMMGEEASYDDVMVGTALVDMYAKCGNIDSSMNVFRLMRKRNVVTWNALFSGLAM 329
Query: 218 NGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELD 277
+G ++F M + + PD +++ AVLSACSH G V++G+ FHS+ +G++P++D
Sbjct: 330 HGKGRMVIDMFPQM-IREVKPDDLTFTAVLSACSHSGIVDEGWRCFHSL-RFYGLEPKVD 387
Query: 278 HYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIES 337
HYACMVDLLGRAGL+EEAE + MP+ P+ V+ G+LLG+C VH E+ +RI LI+
Sbjct: 388 HYACMVDLLGRAGLIEEAEILMREMPVPPNEVVLGSLLGSCSVHGKVEIAERIKRELIQM 447
Query: 338 DQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRS 397
+ IL+SN+YV + + A+ +R ++RKR I++ PG S I ++ VH F +GDRS
Sbjct: 448 SPGNTEYQILMSNMYVAEGRSDIADGLRGSLRKRGIRKIPGLSSIYVNDSVHRFSSGDRS 507
Query: 398 HEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEE--EEKETVIGYHSEKLALAFGLIC 455
H +T+EIY E++++I++ GY + ++ E EEKE + HSEKLA+ FGL+
Sbjct: 508 HPRTKEIYLKLNEVIERIRSAGYVPDVSGLVSHSEGDLEEKEQALCCHSEKLAVCFGLLE 567
Query: 456 TKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
TKP + + + KN+RIC DCHSAMK+VSKV+ R+I IRDR +H F+ GSCSC +YW
Sbjct: 568 TKPSTPLLVFKNLRICRDCHSAMKIVSKVYDREIIIRDRNRFHQFKGGSCSCSDYW 623
Score = 69.7 bits (169), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 67/319 (21%), Positives = 118/319 (36%), Gaps = 68/319 (21%)
Query: 46 NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
N++ Y +GE++ KLFD++P + ++ V
Sbjct: 47 NALFQFYASSGEMVTAQKLFDEIP-----------------------------LSEKDNV 77
Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
W L+S F++ G ++ LF EM+ +E + +V L CA+L L + +
Sbjct: 78 DWTTLLSSFSRYGLLVNSMKLFVEMRRKRVEIDDVSVVCLFGVCAKLEDLGFAQQGHGVA 137
Query: 166 QKKCIKLDSILCAALIDMYAKCG-------------------------------SIDLAM 194
K + +C AL+DMY KCG ++
Sbjct: 138 VKMGVLTSVKVCNALMDMYGKCGLVSEVKRIFEELEEKSVVSWTVVLDTVVKWEGLERGR 197
Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK-GISPDSISYIAVLSACSHL 253
+VFH +++ A+T + G G + E EL M + G + ++ ++LSAC+
Sbjct: 198 EVFHEMPERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQS 257
Query: 254 G------WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPD 307
G WV M ++ +VD+ + G ++ + N M K +
Sbjct: 258 GNLVVGRWVHVYALKKEMMMGEEASYDDVMVGTALVDMYAKCGNIDSSMNVFRLM-RKRN 316
Query: 308 NVIWGTLLGACRVHRNAEM 326
V W L +H M
Sbjct: 317 VVTWNALFSGLAMHGKGRM 335
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 85/201 (42%), Gaps = 12/201 (5%)
Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIK--LDSILCAALIDMYAKCGSIDLAMQVFH--SY 200
LL CA L G +++ + +K S L AL YA G + A ++F
Sbjct: 12 LLRHCAHRSFLRPGKELHAVLTTSGLKKAPRSYLSNALFQFYASSGEMVTAQKLFDEIPL 71
Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSH---LGWVE 257
+KD +T+ + + G + + +LF M+ K + D +S + + C+ LG+ +
Sbjct: 72 SEKDNVDWTTLLSSFSRYGLLVNSMKLFVEMRRKRVEIDDVSVVCLFGVCAKLEDLGFAQ 131
Query: 258 KGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
+G H + G+ + ++D+ G+ GL+ E + + K V W +L
Sbjct: 132 QG----HGVAVKMGVLTSVKVCNALMDMYGKCGLVSEVKRIFEELEEK-SVVSWTVVLDT 186
Query: 318 CRVHRNAEMGQRIGNMLIESD 338
E G+ + + + E +
Sbjct: 187 VVKWEGLERGREVFHEMPERN 207
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170
OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
Length = 990
Score = 381 bits (979), Expect = e-105, Method: Compositional matrix adjust.
Identities = 202/541 (37%), Positives = 313/541 (57%), Gaps = 40/541 (7%)
Query: 10 DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
D FV +LI YS +++A +F E + D+V+WN+M+ GY ++ + + LKLF M
Sbjct: 451 DSFVSTALIDAYSRNRCMKEAEILF-ERHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMH 509
Query: 70 QRNDVS-------------------------------------WNS--ILGGLVRFGSVD 90
++ + S W S IL V+ G +
Sbjct: 510 KQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMS 569
Query: 91 DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
A F+ +P V+W +ISG +NG + A +F +M+ + + P+ + +L A +
Sbjct: 570 AAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASS 629
Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
L AL+ G +++ K D + +L+DMYAKCGSID A +F +++A+ +
Sbjct: 630 CLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNA 689
Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
+ GLA +G E +LF+ MKS GI PD +++I VLSACSH G V + + + SM +
Sbjct: 690 MLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDY 749
Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
GIKPE++HY+C+ D LGRAGL+++AEN I SM M+ ++ TLL ACRV + E G+R+
Sbjct: 750 GIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRV 809
Query: 331 GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHE 390
L+E + Y+LLSN+Y K + + R M+ K+K+ PG S IE+ +H
Sbjct: 810 ATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHI 869
Query: 391 FLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALA 450
F+ DRS+ +T+ IY+ +++++ IK GY ET + D+EEEEKE + YHSEKLA+A
Sbjct: 870 FVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVA 929
Query: 451 FGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEY 510
FGL+ T P + IR++KN+R+C DCH+AMK ++KV+ R+I +RD +H F+DG CSC +Y
Sbjct: 930 FGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDY 989
Query: 511 W 511
W
Sbjct: 990 W 990
Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 94/390 (24%), Positives = 151/390 (38%), Gaps = 72/390 (18%)
Query: 1 MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
M +K + V NSLI Y + AR VFD + D++SWNS+I G +NG +E
Sbjct: 340 MALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVE 399
Query: 61 GLKLF-------------------------------DKMPQRNDVSWNSILGGLVRFGSV 89
+ LF K + + N++ V +
Sbjct: 400 AVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALI 459
Query: 90 DDACR--------VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
D R + + LV+W +++G+ Q+ + L LF M +
Sbjct: 460 DAYSRNRCMKEAEILFERHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFT 519
Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
L ++ C L A++ G V++Y K LD + + ++DMY KCG + A F S
Sbjct: 520 LATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIP 579
Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF- 260
D A+T+ I G NG AF +F M+ G+ PD + + A S L +E+G
Sbjct: 580 VPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQ 639
Query: 261 --------------YYFHSMFDVHGIKPELDHYACMVD-------------LLGRAGLLE 293
+ S+ D++ +D C+ L+G A E
Sbjct: 640 IHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGE 699
Query: 294 EAENF-----IASMPMKPDNVIWGTLLGAC 318
E + S+ +KPD V + +L AC
Sbjct: 700 GKETLQLFKQMKSLGIKPDKVTFIGVLSAC 729
Score = 89.7 bits (221), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 118/252 (46%), Gaps = 9/252 (3%)
Query: 10 DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
D FV +L+ Y G+V++ + +F+E DVV WN M+ Y+ G E + L
Sbjct: 179 DEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAF- 237
Query: 70 QRNDVSWNSILGGLVRFGSVDDA----CRVFNQMPKRSLVSWVVL----ISGFAQNGRPK 121
+ ++ N I L+ S DD+ + F S VS ++ +S + +G+
Sbjct: 238 HSSGLNPNEITLRLLARISGDDSDAGQVKSFANGNDASSVSEIIFRNKGLSEYLHSGQYS 297
Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181
L F +M D+E + + +L+ ++ +L G V+ K + L + +LI
Sbjct: 298 ALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLI 357
Query: 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241
+MY K A VF + ++D+ ++ S I G+A NG +EA LF + G+ PD
Sbjct: 358 NMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQY 417
Query: 242 SYIAVLSACSHL 253
+ +VL A S L
Sbjct: 418 TMTSVLKAASSL 429
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 89/190 (46%), Gaps = 39/190 (20%)
Query: 3 VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGE----- 57
+K+ + D++V + ++ Y CG + A++ FD D V+W +MI+G + NGE
Sbjct: 544 IKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAF 603
Query: 58 -ILEGLKLFDKMPQRNDVSW---------------------------------NSILGGL 83
+ ++L +P ++ S++
Sbjct: 604 HVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMY 663
Query: 84 VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
+ GS+DDA +F ++ ++ +W ++ G AQ+G KE L LF++M+SL ++P+ +
Sbjct: 664 AKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFI 723
Query: 144 SLLSACAQLG 153
+LSAC+ G
Sbjct: 724 GVLSACSHSG 733
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 75/177 (42%), Gaps = 48/177 (27%)
Query: 12 FVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGE-----ILEGLKLFD 66
F+ N+LI YS CG + AR VFD+ D D+VSWNS++ Y ++ E I + LF
Sbjct: 75 FLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQAFLLFR 134
Query: 67 KMPQRNDVSWNS-------------------------------------ILGGLV----R 85
+ R DV + S + G LV +
Sbjct: 135 IL--RQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLK 192
Query: 86 FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
FG V + +F +MP R +V W +++ + + G +EA+ L S L PN L
Sbjct: 193 FGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITL 249
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 93/207 (44%), Gaps = 17/207 (8%)
Query: 51 GYVRNGEILEGLKL----------FDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMP 100
G++RN L L F++ P+R + N+++ + GS+ A RVF++MP
Sbjct: 44 GFLRNAITSSDLMLGKCTHARILTFEENPERFLI--NNLISMYSKCGSLTYARRVFDKMP 101
Query: 101 KRSLVSWVVLISGFAQNGR-----PKEALALFREMQSLDLEPNSAILVSLLSACAQLGAL 155
R LVSW +++ +AQ+ ++A LFR ++ + + L +L C G +
Sbjct: 102 DRDLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYV 161
Query: 156 DYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGL 215
+ Y K + D + AL+++Y K G + +F +DV + +
Sbjct: 162 WASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAY 221
Query: 216 AMNGHSIEAFELFENMKSKGISPDSIS 242
G EA +L S G++P+ I+
Sbjct: 222 LEMGFKEEAIDLSSAFHSSGLNPNEIT 248
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 15/147 (10%)
Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSI-----EAFELFENMKSK 234
LI MY+KCGS+ A +VF D+D+ ++ S + A + + +AF LF ++
Sbjct: 80 LISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQD 139
Query: 235 GISPDSISYIAVLSACSHLG--WVEKGFYYFHSMFDVHGIKPELDHY--ACMVDLLGRAG 290
+ ++ +L C H G W + F+ + + G D + +V++ + G
Sbjct: 140 VVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDG-----DEFVAGALVNIYLKFG 194
Query: 291 LLEEAENFIASMPMKPDNVIWGTLLGA 317
++E + MP + D V+W +L A
Sbjct: 195 KVKEGKVLFEEMPYR-DVVLWNLMLKA 220
>sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170,
chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2
SV=1
Length = 850
Score = 381 bits (978), Expect = e-105, Method: Compositional matrix adjust.
Identities = 204/547 (37%), Positives = 314/547 (57%), Gaps = 48/547 (8%)
Query: 13 VKNSLIQFYSVC---GRVRDARWVFDESDDLDVVSWNSMINGYVRNGEI-LEGLKLFDKM 68
V+ SL+ Y+ C G V D R VFD +D V+SW ++I GY++N + E + LF +M
Sbjct: 304 VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEM 363
Query: 69 PQR----------------------------------------NDVSWNSILGGLVRFGS 88
+ N NS++ V+
Sbjct: 364 ITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDR 423
Query: 89 VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148
++DA R F + +++LVS+ + G +N ++A L E+ +L ++ SLLS
Sbjct: 424 MEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSG 483
Query: 149 CAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAY 208
A +G++ G ++S + K + + +C ALI MY+KCGSID A +VF+ +++V ++
Sbjct: 484 VANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISW 543
Query: 209 TSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD 268
TS I G A +G +I E F M +G+ P+ ++Y+A+LSACSH+G V +G+ +F+SM++
Sbjct: 544 TSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYE 603
Query: 269 VHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQ 328
H IKP+++HYACMVDLL RAGLL +A FI +MP + D ++W T LGACRVH N E+G+
Sbjct: 604 DHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGK 663
Query: 329 RIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVV 388
++E D N YI LSNIY K E + E+R+ M++R + + GCS IE+ +
Sbjct: 664 LAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKI 723
Query: 389 HEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKET----VIGYHS 444
H+F GD +H +IY + ++ +IK GY +T V+ +EEE E ++ HS
Sbjct: 724 HKFYVGDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHS 783
Query: 445 EKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGS 504
EK+A+AFGLI T +R+ KN+R+C DCH+AMK +S V R+I +RD +HHF+DG
Sbjct: 784 EKIAVAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGK 843
Query: 505 CSCLEYW 511
CSC +YW
Sbjct: 844 CSCNDYW 850
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 98/360 (27%), Positives = 167/360 (46%), Gaps = 54/360 (15%)
Query: 10 DVFVKNSLIQFYSVCGRVRDARWVFDESDDL---DVVSWNSMINGYVRNGEILEGLKLFD 66
D + NSLI YS G A VF+ DVVSW++M+ Y NG L+ +K+F
Sbjct: 96 DSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFV 155
Query: 67 KMPQ----RNDVSWNSI----------------LGGLVRFG------------------- 87
+ + ND + ++ LG L++ G
Sbjct: 156 EFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKG 215
Query: 88 --SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
S ++A +VF++M + ++V+W ++I+ Q G P+EA+ F +M E + L S+
Sbjct: 216 ENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSV 275
Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC---GSIDLAMQVFHSYGD 202
SACA+L L G ++S+ + + +D + C +L+DMYAKC GS+D +VF D
Sbjct: 276 FSACAELENLSLGKQLHSWAIRSGL-VDDVEC-SLVDMYAKCSADGSVDDCRKVFDRMED 333
Query: 203 KDVSAYTSAIFGLAMNGH-SIEAFELFENMKSKG-ISPDSISYIAVLSACSHLGWVEKGF 260
V ++T+ I G N + + EA LF M ++G + P+ ++ + AC +L G
Sbjct: 334 HSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGK 393
Query: 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL-GACR 319
F G+ ++ + ++ +E+A+ S+ K + V + T L G CR
Sbjct: 394 QVLGQAFK-RGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEK-NLVSYNTFLDGTCR 451
Score = 82.4 bits (202), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 108/237 (45%), Gaps = 42/237 (17%)
Query: 4 KNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK 63
K A + V NS+I + R+ DA+ F+ + ++VS+N+ ++G RN + K
Sbjct: 401 KRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFK 460
Query: 64 LFDKMPQR----NDVSWNSILGGLV----------------------------------- 84
L ++ +R + ++ S+L G+
Sbjct: 461 LLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYS 520
Query: 85 RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
+ GS+D A RVFN M R+++SW +I+GFA++G L F +M ++PN V+
Sbjct: 521 KCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVA 580
Query: 145 LLSACAQLGALDYGNWVY--SYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
+LSAC+ +G + G W + S + IK A ++D+ + G + A + ++
Sbjct: 581 ILSACSHVGLVSEG-WRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINT 636
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 102/225 (45%), Gaps = 13/225 (5%)
Query: 40 LDVVSWNSMINGYVRNGEILEG------LKLFDKMPQRNDVSWNSILGGLVRFGSVDDAC 93
+D V+++S++ +R + G L FD P + V +NS++ + G A
Sbjct: 60 MDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEP--DSVLYNSLISLYSKSGDSAKAE 117
Query: 94 RVFNQMP---KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
VF M KR +VSW +++ + NGR +A+ +F E L L PN +++ AC+
Sbjct: 118 DVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACS 177
Query: 151 QLGALDYGNWVYSYIQKKC-IKLDSILCAALIDMYAKC-GSIDLAMQVFHSYGDKDVSAY 208
+ G ++ K + D + +LIDM+ K S + A +VF + +V +
Sbjct: 178 NSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTW 237
Query: 209 TSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL 253
T I G EA F +M G D + +V SAC+ L
Sbjct: 238 TLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAEL 282
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 93/199 (46%), Gaps = 19/199 (9%)
Query: 2 VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
VVK + + V N+LI YS CG + A VF+ ++ +V+SW SMI G+ ++G +
Sbjct: 500 VVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRV 559
Query: 62 LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQM-----PKRSLVSWVVLIS 112
L+ F++M + N+V++ +IL G V + R FN M K + + ++
Sbjct: 560 LETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVD 619
Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKL 172
+ G +A F + ++ + + + + L AC + G +K ++L
Sbjct: 620 LLCRAGLLTDA---FEFINTMPFQADVLVWRTFLGACRVHSNTELGKLA----ARKILEL 672
Query: 173 DSILCAALI---DMYAKCG 188
D AA I ++YA G
Sbjct: 673 DPNEPAAYIQLSNIYACAG 691
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 99/238 (41%), Gaps = 38/238 (15%)
Query: 138 NSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVF 197
+S SLL +C + G V++ + + I+ DS+L +LI +Y+K G A VF
Sbjct: 61 DSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVF 120
Query: 198 HS---YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSH-- 252
+ +G +DV ++++ + NG ++A ++F G+ P+ Y AV+ ACS+
Sbjct: 121 ETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSD 180
Query: 253 ---LGWVEKGFYY-------------------------FHSMFDVHGIKPELD--HYACM 282
+G V GF F + + V EL+ + M
Sbjct: 181 FVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLM 240
Query: 283 VDLLGRAGLLEEAENFIASMPM---KPDNVIWGTLLGACRVHRNAEMGQRIGNMLIES 337
+ + G EA F M + + D ++ AC N +G+++ + I S
Sbjct: 241 ITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRS 298
Score = 34.7 bits (78), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 13/89 (14%)
Query: 283 VDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD 342
+DL+ R G+ PM D+V + +LL +C R+ +G+ + LIE D D
Sbjct: 49 LDLMARDGI----------RPM--DSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPD 96
Query: 343 G-RYILLSNIYVETLKGENAEEVRKTMRK 370
Y L ++Y ++ AE+V +TMR+
Sbjct: 97 SVLYNSLISLYSKSGDSAKAEDVFETMRR 125
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 381 bits (978), Expect = e-105, Method: Compositional matrix adjust.
Identities = 197/558 (35%), Positives = 318/558 (56%), Gaps = 52/558 (9%)
Query: 6 SFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLF 65
S + FV ++L+ Y C +V R VFD D + WN+MI GY +N E L LF
Sbjct: 333 SLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLF 392
Query: 66 DKMPQ----------------------------------------RNDVSWNSILGGLVR 85
M + R+ N+++ R
Sbjct: 393 IGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSR 452
Query: 86 FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD----------- 134
G +D A R+F +M R LV+W +I+G+ + ++AL L +MQ+L+
Sbjct: 453 LGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVS 512
Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
L+PNS L+++L +CA L AL G +++Y K + D + +AL+DMYAKCG + ++
Sbjct: 513 LKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSR 572
Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
+VF K+V + I M+G+ EA +L M +G+ P+ +++I+V +ACSH G
Sbjct: 573 KVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSG 632
Query: 255 WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNV-IWGT 313
V++G F+ M +G++P DHYAC+VDLLGRAG ++EA + MP + W +
Sbjct: 633 MVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSS 692
Query: 314 LLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKI 373
LLGA R+H N E+G+ LI+ + N Y+LL+NIY + A EVR+ M+++ +
Sbjct: 693 LLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGV 752
Query: 374 KRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEE 433
++ PGCS IE VH+F+AGD SH +++++ + E + ++++ GY +T V+ ++EE
Sbjct: 753 RKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEE 812
Query: 434 EEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRD 493
+EKE ++ HSEKLA+AFG++ T PG++IR+ KN+R+C+DCH A K +SK+ R+I +RD
Sbjct: 813 DEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRD 872
Query: 494 RKHYHHFEDGSCSCLEYW 511
+ +H F++G+CSC +YW
Sbjct: 873 VRRFHRFKNGTCSCGDYW 890
Score = 121 bits (304), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/367 (25%), Positives = 173/367 (47%), Gaps = 56/367 (15%)
Query: 12 FVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP-- 69
F+ N+L+ Y G++ ++ + D+V+WN++++ +N ++LE L+ +M
Sbjct: 237 FIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLE 296
Query: 70 --QRNDVSWNSILGG-----LVRFGS----------------------VDDAC------- 93
+ ++ + +S+L ++R G VD C
Sbjct: 297 GVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLS 356
Query: 94 --RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQ-SLDLEPNSAILVSLLSACA 150
RVF+ M R + W +I+G++QN KEAL LF M+ S L NS + ++ AC
Sbjct: 357 GRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACV 416
Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
+ GA ++ ++ K+ + D + L+DMY++ G ID+AM++F D+D+ + +
Sbjct: 417 RSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNT 476
Query: 211 AIFGLAMNGHSIEAFELFENMK------SKGIS-----PDSISYIAVLSACSHLGWVEKG 259
I G + H +A L M+ SKG S P+SI+ + +L +C+ L + KG
Sbjct: 477 MITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKG 536
Query: 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVI-WGTLLGAC 318
H+ + + ++ + +VD+ + G L+ + +P K NVI W ++ A
Sbjct: 537 -KEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQK--NVITWNVIIMAY 593
Query: 319 RVHRNAE 325
+H N +
Sbjct: 594 GMHGNGQ 600
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 105/221 (47%), Gaps = 35/221 (15%)
Query: 42 VVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPK 101
V N+++N Y + G+ K+FD++ +RN VSWNS++ L F
Sbjct: 133 VTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFE-------------- 178
Query: 102 RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG---ALDYG 158
W + AL FR M ++EP+S LVS+++AC+ L L G
Sbjct: 179 ----KW-------------EMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMG 221
Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
V++Y +K +L+S + L+ MY K G + + + S+G +D+ + + + L N
Sbjct: 222 KQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQN 280
Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
+EA E M +G+ PD + +VL ACSHL + G
Sbjct: 281 EQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTG 321
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 115/249 (46%), Gaps = 53/249 (21%)
Query: 2 VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
VVK D FV+N+L+ YS G++ A +F + +D D+V+WN+MI GYV + +
Sbjct: 431 VVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDA 490
Query: 62 LKLFDKMPQ---------------------------------------------RNDVSW 76
L L KM +N+++
Sbjct: 491 LLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLAT 550
Query: 77 NSILGGLV-----RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQ 131
+ +G + + G + + +VF+Q+P++++++W V+I + +G +EA+ L R M
Sbjct: 551 DVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMM 610
Query: 132 SLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKK--CIKLDSILCAALIDMYAKCGS 189
++PN +S+ +AC+ G +D G ++ Y+ K ++ S A ++D+ + G
Sbjct: 611 VQGVKPNEVTFISVFAACSHSGMVDEGLRIF-YVMKPDYGVEPSSDHYACVVDLLGRAGR 669
Query: 190 IDLAMQVFH 198
I A Q+ +
Sbjct: 670 IKEAYQLMN 678
Score = 72.0 bits (175), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 116/239 (48%), Gaps = 6/239 (2%)
Query: 102 RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161
RS W+ L+ ++ +EA+ + +M L ++P++ +LL A A L ++ G +
Sbjct: 60 RSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQI 119
Query: 162 YSYIQKKCIKLDSILCA-ALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGH 220
++++ K +DS+ A L+++Y KCG +VF +++ ++ S I L
Sbjct: 120 HAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEK 179
Query: 221 SIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA 280
A E F M + + P S + ++V++ACS+L E G + K EL+ +
Sbjct: 180 WEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPE-GLMMGKQVHAYGLRKGELNSFI 238
Query: 281 --CMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA-CRVHRNAEMGQRIGNMLIE 336
+V + G+ G L ++ + S + D V W T+L + C+ + E + + M++E
Sbjct: 239 INTLVAMYGKLGKLASSKVLLGSFGGR-DLVTWNTVLSSLCQNEQLLEALEYLREMVLE 296
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 379 bits (973), Expect = e-104, Method: Compositional matrix adjust.
Identities = 202/516 (39%), Positives = 303/516 (58%), Gaps = 8/516 (1%)
Query: 2 VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFD---ESDDLDVVSWNSMINGYVRNGEI 58
+V + D F S+I+ + G ++ + V +D NS+++ Y + G+
Sbjct: 277 MVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHFDNSLVSLYYKCGKF 336
Query: 59 LEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNG 118
E +F+KMP ++ VSWN++L G V G + +A +F +M +++++SW+++ISG A+NG
Sbjct: 337 DEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENG 396
Query: 119 RPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCA 178
+E L LF M+ EP + +CA LGA G ++ + K I DS L A
Sbjct: 397 FGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLK--IGFDSSLSA 454
Query: 179 --ALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGI 236
ALI MYAKCG ++ A QVF + D ++ + I L +GH EA +++E M KGI
Sbjct: 455 GNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGI 514
Query: 237 SPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAE 296
PD I+ + VL+ACSH G V++G YF SM V+ I P DHYA ++DLL R+G +AE
Sbjct: 515 RPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAE 574
Query: 297 NFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETL 356
+ I S+P KP IW LL CRVH N E+G + L HDG Y+LLSN++ T
Sbjct: 575 SVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATG 634
Query: 357 KGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIK 416
+ E VRK MR R +K+ CS IE++ VH FL D SH + + +Y + +++ K+++
Sbjct: 635 QWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMR 694
Query: 417 NYGYNVETRSVMFDIEEE-EKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCH 475
GY +T V+ D+E + KE ++ HSEK+A+AFGL+ PG+ IRI KN+R C DCH
Sbjct: 695 RLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCH 754
Query: 476 SAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
+ + +S V +R I +RDRK +HHF +G CSC +W
Sbjct: 755 NFFRFLSWVVQRDIILRDRKRFHHFRNGECSCGNFW 790
Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/294 (26%), Positives = 130/294 (44%), Gaps = 41/294 (13%)
Query: 63 KLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKR-SLVSWVVLISGFAQNGRPK 121
K+FD++ ++++ SW +++ G V+ G D + M LV++ +ISG+ G +
Sbjct: 209 KVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQ 268
Query: 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKK---CIKLDSILCA 178
EAL + R M S +E + S++ ACA G L G V++Y+ ++ D+
Sbjct: 269 EALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHFDN---- 324
Query: 179 ALIDMYAKCGSIDLAMQVFHSYGDKD-------VSAYTSA-------------------- 211
+L+ +Y KCG D A +F KD +S Y S+
Sbjct: 325 SLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILS 384
Query: 212 ----IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMF 267
I GLA NG E +LF MK +G P ++ + +C+ LG G Y +
Sbjct: 385 WMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLL 444
Query: 268 DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
+ G L ++ + + G++EEA +MP D+V W L+ A H
Sbjct: 445 KI-GFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCL-DSVSWNALIAALGQH 496
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/326 (24%), Positives = 138/326 (42%), Gaps = 19/326 (5%)
Query: 2 VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
++ F + N LI Y + AR +FDE + D ++ +M++GY +G+I
Sbjct: 40 IITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGYCASGDITLA 99
Query: 62 LKLFDKMP--QRNDVSWNSILGGLVR----FGSVDDACRVFNQMPKRSLVSWVVLISGFA 115
+F+K P R+ V +N+++ G + +++ C++ ++ K ++ +++G A
Sbjct: 100 RGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLA 159
Query: 116 QNGRPKEALALFREMQSLD----LEPNSAILVSLLSACAQLGALDY-GNWVYSYIQKKCI 170
++ F + S LVS+ S CA +L + V+ I +K
Sbjct: 160 LVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEK-- 217
Query: 171 KLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK-DVSAYTSAIFGLAMNGHSIEAFELFE 229
D ++ Y K G DL ++ D + AY + I G G EA E+
Sbjct: 218 --DERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVR 275
Query: 230 NMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRA 289
M S GI D +Y +V+ AC+ G ++ G + D+ +V L +
Sbjct: 276 RMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHFDN--SLVSLYYKC 333
Query: 290 GLLEEAENFIASMPMKPDNVIWGTLL 315
G +EA MP K D V W LL
Sbjct: 334 GKFDEARAIFEKMPAK-DLVSWNALL 358
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 378 bits (970), Expect = e-104, Method: Compositional matrix adjust.
Identities = 197/549 (35%), Positives = 311/549 (56%), Gaps = 40/549 (7%)
Query: 3 VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
VK F+ + N+L+ YS CG + A+ VF E D VVS+ SMI GY R G E +
Sbjct: 323 VKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAV 382
Query: 63 KLFDKMPQR----------------------------------NDVSW-----NSILGGL 83
KLF++M + ND+ + N+++
Sbjct: 383 KLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMY 442
Query: 84 VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM-QSLDLEPNSAIL 142
+ GS+ +A VF++M + ++SW +I G+++N EAL+LF + + P+ +
Sbjct: 443 AKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTV 502
Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
+L ACA L A D G ++ YI + D + +L+DMYAKCG++ LA +F
Sbjct: 503 ACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIAS 562
Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
KD+ ++T I G M+G EA LF M+ GI D IS++++L ACSH G V++G+ +
Sbjct: 563 KDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRF 622
Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
F+ M I+P ++HYAC+VD+L R G L +A FI +MP+ PD IWG LL CR+H
Sbjct: 623 FNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHH 682
Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
+ ++ +++ + E + + G Y+L++NIY E K E + +RK + +R +++ PGCS I
Sbjct: 683 DVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWI 742
Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
E+ G V+ F+AGD S+ +T+ I F ++ ++ GY+ T+ + D EE EKE +
Sbjct: 743 EIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCG 802
Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFED 502
HSEKLA+A G+I + G +IR+ KN+R+C DCH K +SK+ +R+I +RD +H F+D
Sbjct: 803 HSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKD 862
Query: 503 GSCSCLEYW 511
G CSC +W
Sbjct: 863 GHCSCRGFW 871
Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 112/360 (31%), Positives = 171/360 (47%), Gaps = 42/360 (11%)
Query: 2 VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
++K+ F V NSL+ FY RV AR VFDE + DV+SWNS+INGYV NG +G
Sbjct: 221 ILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKG 280
Query: 62 LKLFDKMP---------------------------------------QRNDVSWNSILGG 82
L +F +M R D N++L
Sbjct: 281 LSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDM 340
Query: 83 LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142
+ G +D A VF +M RS+VS+ +I+G+A+ G EA+ LF EM+ + P+ +
Sbjct: 341 YSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTV 400
Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202
++L+ CA+ LD G V+ +I++ + D + AL+DMYAKCGS+ A VF
Sbjct: 401 TAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRV 460
Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFE-NMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
KD+ ++ + I G + N ++ EA LF ++ K SPD + VL AC+ L +KG
Sbjct: 461 KDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKG-R 519
Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
H +G + +VD+ + G L A + K D V W ++ +H
Sbjct: 520 EIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASK-DLVSWTVMIAGYGMH 578
Score = 157 bits (396), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 105/375 (28%), Positives = 180/375 (48%), Gaps = 43/375 (11%)
Query: 5 NSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKL 64
N F D + + L Y+ CG +++A VFDE + WN ++N ++G+ + L
Sbjct: 123 NGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGL 182
Query: 65 FDKM----------------------------------------PQRNDVSWNSILGGLV 84
F KM +RN V NS++ +
Sbjct: 183 FKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVG-NSLVAFYL 241
Query: 85 RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144
+ VD A +VF++M +R ++SW +I+G+ NG ++ L++F +M +E + A +VS
Sbjct: 242 KNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVS 301
Query: 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204
+ + CA + G V+S K C + C L+DMY+KCG +D A VF D+
Sbjct: 302 VFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRS 361
Query: 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
V +YTS I G A G + EA +LFE M+ +GISPD + AVL+ C+ +++G H
Sbjct: 362 VVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEG-KRVH 420
Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNA 324
+ + ++ ++D+ + G ++EAE + M +K D + W T++G + A
Sbjct: 421 EWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVK-DIISWNTIIGGYSKNCYA 479
Query: 325 EMGQRIGNMLIESDQ 339
+ N+L+E +
Sbjct: 480 NEALSLFNLLLEEKR 494
Score = 103 bits (256), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 128/291 (43%), Gaps = 77/291 (26%)
Query: 2 VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
+ +N +D+FV N+L+ Y+ CG +++A VF E D++SWN++I GY +N E
Sbjct: 423 IKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEA 482
Query: 62 LKLFDKM-------PQRNDVSW---------------------------------NSILG 81
L LF+ + P V+ NS++
Sbjct: 483 LSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVD 542
Query: 82 GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
+ G++ A +F+ + + LVSW V+I+G+ +G KEA+ALF +M+ +E +
Sbjct: 543 MYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEIS 602
Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSIL--CAALIDMYAKCGSIDLAMQVFHS 199
VSLL AC+ G +D G W + I + K++ + A ++DM A+ G +
Sbjct: 603 FVSLLYACSHSGLVDEG-WRFFNIMRHECKIEPTVEHYACIVDMLARTGDL--------- 652
Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250
I+A+ ENM I PD+ + A+L C
Sbjct: 653 ----------------------IKAYRFIENMP---IPPDATIWGALLCGC 678
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 2/158 (1%)
Query: 102 RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161
RS+ + F ++G + A+ L D++P + L S+L CA +L G V
Sbjct: 59 RSVTDANTQLRRFCESGNLENAVKLLCVSGKWDIDPRT--LCSVLQLCADSKSLKDGKEV 116
Query: 162 YSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHS 221
++I+ +DS L + L MY CG + A +VF + + + LA +G
Sbjct: 117 DNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDF 176
Query: 222 IEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
+ LF+ M S G+ DS ++ V + S L V G
Sbjct: 177 SGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGG 214
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 377 bits (968), Expect = e-103, Method: Compositional matrix adjust.
Identities = 202/557 (36%), Positives = 315/557 (56%), Gaps = 49/557 (8%)
Query: 2 VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
++ N D F+ LI YS G V AR VFD++ + WN++ G E
Sbjct: 103 ILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEV 162
Query: 62 LKLFDKMPQ------------------RNDVSWNSILGG--------------------- 82
L L+ KM + ++ + N ++ G
Sbjct: 163 LGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTT 222
Query: 83 ----LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM--QSLDLE 136
RFG VD A VF MP R++VSW +I+ +A+NG+ EAL FREM ++ D
Sbjct: 223 LVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSS 282
Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSIL--CAALIDMYAKCGSIDLAM 194
PNS +VS+L ACA L AL+ G ++ YI ++ LDSIL +AL+ MY +CG +++
Sbjct: 283 PNSVTMVSVLQACASLAALEQGKLIHGYILRR--GLDSILPVISALVTMYGRCGKLEVGQ 340
Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
+VF D+DV ++ S I ++G+ +A ++FE M + G SP +++++VL ACSH G
Sbjct: 341 RVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEG 400
Query: 255 WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTL 314
VE+G F +M+ HGIKP+++HYACMVDLLGRA L+EA + M +P +WG+L
Sbjct: 401 LVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSL 460
Query: 315 LGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIK 374
LG+CR+H N E+ +R L + + G Y+LL++IY E + + V+K + R ++
Sbjct: 461 LGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQ 520
Query: 375 RAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEE 434
+ PG +E+ ++ F++ D + ++I+ F ++ + +K GY +T+ V++++E E
Sbjct: 521 KLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETE 580
Query: 435 EKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDR 494
EKE ++ HSEKLALAFGLI T G IRI KN+R+C DCH K +SK +++I +RD
Sbjct: 581 EKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDV 640
Query: 495 KHYHHFEDGSCSCLEYW 511
+H F++G CSC +YW
Sbjct: 641 NRFHRFKNGVCSCGDYW 657
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/317 (24%), Positives = 144/317 (45%), Gaps = 12/317 (3%)
Query: 15 NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK----LFDKMPQ 70
N LIQ G+++ A V + ++ +I + + L+ + D
Sbjct: 50 NQLIQSLCKEGKLKQAIRVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRHILDNGSD 109
Query: 71 RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM 130
++ ++G GSVD A +VF++ KR++ W L G +E L L+ +M
Sbjct: 110 QDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKM 169
Query: 131 QSLDLEPNSAILVSLLSACA----QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAK 186
+ +E + +L AC + L G +++++ ++ + L+DMYA+
Sbjct: 170 NRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYAR 229
Query: 187 CGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM--KSKGISPDSISYI 244
G +D A VF ++V ++++ I A NG + EA F M ++K SP+S++ +
Sbjct: 230 FGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMV 289
Query: 245 AVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPM 304
+VL AC+ L +E+G H G+ L + +V + GR G LE + M
Sbjct: 290 SVLQACASLAALEQG-KLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHD 348
Query: 305 KPDNVIWGTLLGACRVH 321
+ D V W +L+ + VH
Sbjct: 349 R-DVVSWNSLISSYGVH 364
>sp|Q9FI49|PP428_ARATH Pentatricopeptide repeat-containing protein At5g50990
OS=Arabidopsis thaliana GN=PCMP-H59 PE=2 SV=2
Length = 534
Score = 377 bits (967), Expect = e-103, Method: Compositional matrix adjust.
Identities = 190/437 (43%), Positives = 287/437 (65%), Gaps = 6/437 (1%)
Query: 77 NSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL-DL 135
N I+ L++ G A +V +++++W ++I G+ +N + +EAL + M S D+
Sbjct: 102 NLIIESLMKIGESGLAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKALKNMLSFTDI 161
Query: 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ 195
+PN S L+ACA+LG L + WV+S + I+L++IL +AL+D+YAKCG I + +
Sbjct: 162 KPNKFSFASSLAACARLGDLHHAKWVHSLMIDSGIELNAILSSALVDVYAKCGDIGTSRE 221
Query: 196 VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGW 255
VF+S DVS + + I G A +G + EA +F M+++ +SPDSI+++ +L+ CSH G
Sbjct: 222 VFYSVKRNDVSIWNAMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTTCSHCGL 281
Query: 256 VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
+E+G YF M I+P+L+HY MVDLLGRAG ++EA I SMP++PD VIW +LL
Sbjct: 282 LEEGKEYFGLMSRRFSIQPKLEHYGAMVDLLGRAGRVKEAYELIESMPIEPDVVIWRSLL 341
Query: 316 GACRVHRNAEMGQ-RIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIK 374
+ R ++N E+G+ I N+ + G Y+LLSNIY T K E+A++VR+ M K I+
Sbjct: 342 SSSRTYKNPELGEIAIQNL----SKAKSGDYVLLSNIYSSTKKWESAQKVRELMSKEGIR 397
Query: 375 RAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEE 434
+A G S +E G++H F AGD SH +T+ IY+ E +++K K+ G+ +T V+ D+ EE
Sbjct: 398 KAKGKSWLEFGGMIHRFKAGDTSHIETKAIYKVLEGLIQKTKSQGFVSDTDLVLMDVSEE 457
Query: 435 EKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDR 494
EKE + YHSEKLALA+ ++ + PG+ IRI KNIR+CSDCH+ +K VSK+ R I +RDR
Sbjct: 458 EKEENLNYHSEKLALAYVILKSSPGTEIRIQKNIRMCSDCHNWIKAVSKLLNRVIIMRDR 517
Query: 495 KHYHHFEDGSCSCLEYW 511
+H FEDG CSC +YW
Sbjct: 518 IRFHRFEDGLCSCRDYW 534
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 94/226 (41%), Gaps = 41/226 (18%)
Query: 15 NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDV 74
N +I+ G A+ V + D +V++WN MI GYVRN + E LK M D+
Sbjct: 102 NLIIESLMKIGESGLAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKALKNMLSFTDI 161
Query: 75 -----SWNSILGGLVRFGSVDDA----------------------------C-------R 94
S+ S L R G + A C
Sbjct: 162 KPNKFSFASSLAACARLGDLHHAKWVHSLMIDSGIELNAILSSALVDVYAKCGDIGTSRE 221
Query: 95 VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA 154
VF + + + W +I+GFA +G EA+ +F EM++ + P+S + LL+ C+ G
Sbjct: 222 VFYSVKRNDVSIWNAMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTTCSHCGL 281
Query: 155 LDYGNWVYSYIQKK-CIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
L+ G + + ++ I+ A++D+ + G + A ++ S
Sbjct: 282 LEEGKEYFGLMSRRFSIQPKLEHYGAMVDLLGRAGRVKEAYELIES 327
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 76/157 (48%), Gaps = 12/157 (7%)
Query: 1 MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
+++ + + + ++L+ Y+ CG + +R VF DV WN+MI G+ +G E
Sbjct: 190 LMIDSGIELNAILSSALVDVYAKCGDIGTSREVFYSVKRNDVSIWNAMITGFATHGLATE 249
Query: 61 GLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLI 111
+++F +M + +++ +L G +++ F M +R L + ++
Sbjct: 250 AIRVFSEMEAEHVSPDSITFLGLLTTCSHCGLLEEGKEYFGLMSRRFSIQPKLEHYGAMV 309
Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148
+ GR KEA L ++S+ +EP+ I SLLS+
Sbjct: 310 DLLGRAGRVKEAYEL---IESMPIEPDVVIWRSLLSS 343
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 375 bits (963), Expect = e-103, Method: Compositional matrix adjust.
Identities = 180/470 (38%), Positives = 284/470 (60%), Gaps = 4/470 (0%)
Query: 46 NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
N+MI+ YV+ I K+FD+MP+R+ +SW ++ R G+++ A +F +P + +V
Sbjct: 188 NTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPTKDMV 247
Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
+W +++GFAQN +P+EAL F M+ + + + +SACAQLGA Y +
Sbjct: 248 AWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIA 307
Query: 166 QKKCIKLDS--ILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIE 223
QK ++ +ALIDMY+KCG+++ A+ VF S +K+V Y+S I GLA +G + E
Sbjct: 308 QKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQE 367
Query: 224 AFELFENMKSKG-ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACM 282
A LF M ++ I P++++++ L ACSH G V++G F SM+ G++P DHY CM
Sbjct: 368 ALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTCM 427
Query: 283 VDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD 342
VDLLGR G L+EA I +M ++P +WG LLGACR+H N E+ + L E + +
Sbjct: 428 VDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAAEHLFELEPDII 487
Query: 343 GRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS-LIELDGVVHEFLAGDRSHEKT 401
G YILLSN+Y VRK ++++ +K+ P S +++ +G +H+F G+ +H +
Sbjct: 488 GNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGNLNHPMS 547
Query: 402 QEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSV 461
+I EE+V+++ GY + SV +D+ + K ++ H+EKLALAF L+ T S
Sbjct: 548 NKIQDKLEELVERLTVLGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSLLTTNRDST 607
Query: 462 IRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
I I+KN+R+C DCH M+L S+V + I +RD +HHF G CSC ++W
Sbjct: 608 ITIMKNLRMCLDCHKFMRLASEVTGKVIIMRDNMRFHHFRSGDCSCGDFW 657
Score = 89.0 bits (219), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 113/251 (45%), Gaps = 42/251 (16%)
Query: 92 ACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151
A RV + R+ W +I G+A G+ EA+A++ M+ ++ P S +LL AC
Sbjct: 102 ARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGT 161
Query: 152 LGALDYG-----------NWVYSYIQKKCI----KLDSILCA----------------AL 180
+ L+ G + + Y+ I K +SI CA L
Sbjct: 162 MKDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTEL 221
Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
I YA+ G+++ A ++F S KD+ A+T+ + G A N EA E F+ M+ GI D
Sbjct: 222 IAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADE 281
Query: 241 ISYIAVLSACSHLG---WVEKGFYYFHSMFDVHGIKPELDHY---ACMVDLLGRAGLLEE 294
++ +SAC+ LG + ++ + G P DH + ++D+ + G +EE
Sbjct: 282 VTVAGYISACAQLGASKYADRAV----QIAQKSGYSPS-DHVVIGSALIDMYSKCGNVEE 336
Query: 295 AENFIASMPMK 305
A N SM K
Sbjct: 337 AVNVFMSMNNK 347
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/288 (23%), Positives = 120/288 (41%), Gaps = 56/288 (19%)
Query: 10 DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM- 68
DV LI Y+ G + A +F+ D+V+W +M+ G+ +N + E L+ FD+M
Sbjct: 214 DVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRME 273
Query: 69 ----------------------------------------PQRNDVSWNSILGGLVRFGS 88
P + V ++++ + G+
Sbjct: 274 KSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGN 333
Query: 89 VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM-QSLDLEPNSAILVSLLS 147
V++A VF M +++ ++ +I G A +GR +EAL LF M +++PN+ V L
Sbjct: 334 VEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALM 393
Query: 148 ACAQLGALDYGNWVY-SYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
AC+ G +D G V+ S Q ++ ++D+ + G + A+++ + +
Sbjct: 394 ACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHG 453
Query: 207 AYTSAIFGLAMNGHS------IEAFELFENMKSKGISPDSISYIAVLS 248
A+ G A H+ I A LFE + PD I +LS
Sbjct: 454 GVWGALLG-ACRIHNNPEIAEIAAEHLFE------LEPDIIGNYILLS 494
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 374 bits (961), Expect = e-103, Method: Compositional matrix adjust.
Identities = 202/513 (39%), Positives = 297/513 (57%), Gaps = 34/513 (6%)
Query: 2 VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDE--SDDLDVVSWNSMINGYVRNGEIL 59
+V F V N+LI YS CG V AR + ++ + DL + + ++++GY++
Sbjct: 305 IVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIK----- 359
Query: 60 EGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGR 119
G ++ A +F + R +V+W +I G+ Q+G
Sbjct: 360 --------------------------LGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGS 393
Query: 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
EA+ LFR M PNS L ++LS + L +L +G ++ K + A
Sbjct: 394 YGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNA 453
Query: 180 LIDMYAKCGSIDLAMQVFHSYG-DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISP 238
LI MYAK G+I A + F ++D ++TS I LA +GH+ EA ELFE M +G+ P
Sbjct: 454 LITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRP 513
Query: 239 DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENF 298
D I+Y+ V SAC+H G V +G YF M DV I P L HYACMVDL GRAGLL+EA+ F
Sbjct: 514 DHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEF 573
Query: 299 IASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKG 358
I MP++PD V WG+LL ACRVH+N ++G+ L+ + + G Y L+N+Y K
Sbjct: 574 IEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKW 633
Query: 359 ENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNY 418
E A ++RK+M+ ++K+ G S IE+ VH F D +H + EIY ++I +IK
Sbjct: 634 EEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKM 693
Query: 419 GYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAM 478
GY +T SV+ D+EEE KE ++ +HSEKLA+AFGLI T + +RI+KN+R+C+DCH+A+
Sbjct: 694 GYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAI 753
Query: 479 KLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
K +SK+ R+I +RD +HHF+DG CSC +YW
Sbjct: 754 KFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786
Score = 131 bits (330), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 138/290 (47%), Gaps = 41/290 (14%)
Query: 46 NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
N+++N Y + G L KLFD+MP R SWN++L + G +D C F+Q+P+R V
Sbjct: 53 NNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSV 112
Query: 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165
SW +I G+ G+ +A+ + +M +EP L ++L++ A ++ G V+S+I
Sbjct: 113 SWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFI 172
Query: 166 QKKCIKLDSILCAALIDMYAKC-------------------------------GSIDLAM 194
K ++ + + +L++MYAKC G +DLAM
Sbjct: 173 VKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAM 232
Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM-KSKGISPDSISYIAVLSACSHL 253
F ++D+ + S I G G+ + A ++F M + +SPD + +VLSAC++L
Sbjct: 233 AQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANL 292
Query: 254 GWVEKG----FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI 299
+ G + + FD+ GI ++ + R G +E A I
Sbjct: 293 EKLCIGKQIHSHIVTTGFDISGIV-----LNALISMYSRCGGVETARRLI 337
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 100/363 (27%), Positives = 161/363 (44%), Gaps = 70/363 (19%)
Query: 46 NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105
NS++N Y + G+ + +FD+M R+ SWN+++ ++ G +D A F QM +R +V
Sbjct: 185 NSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIV 244
Query: 106 SWVVLISGFAQNGRPKEALALFREM--QSLDLEPNSAILVSLLSACAQLGALDYGNWVYS 163
+W +ISGF Q G AL +F +M SL L P+ L S+LSACA L L G ++S
Sbjct: 245 TWNSMISGFNQRGYDLRALDIFSKMLRDSL-LSPDRFTLASVLSACANLEKLCIGKQIHS 303
Query: 164 YIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ---------------------------- 195
+I + I+ ALI MY++CG ++ A +
Sbjct: 304 HIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDM 363
Query: 196 -----VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250
+F S D+DV A+T+ I G +G EA LF +M G P+S + A+LS
Sbjct: 364 NQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVA 423
Query: 251 S-----------HLGWVEKGFYYFHSM--------------------FDVHGIKPELDHY 279
S H V+ G Y S+ FD+ + + +
Sbjct: 424 SSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSW 483
Query: 280 ACMVDLLGRAGLLEEAENFIASMPM---KPDNVIWGTLLGACRVHRNAEMGQRIGNMLIE 336
M+ L + G EEA +M M +PD++ + + AC G++ +M+ +
Sbjct: 484 TSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKD 543
Query: 337 SDQ 339
D+
Sbjct: 544 VDK 546
>sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2
SV=1
Length = 704
Score = 372 bits (956), Expect = e-102, Method: Compositional matrix adjust.
Identities = 195/534 (36%), Positives = 299/534 (55%), Gaps = 32/534 (5%)
Query: 10 DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
DV ++I GRV +AR +FDE + +VV+W +MI GY +N + KLF+ MP
Sbjct: 171 DVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMP 230
Query: 70 QRNDVSWNSILGGLVRFGSVDD--------------AC-----------------RVFNQ 98
++ +VSW S+L G G ++D AC RVF+
Sbjct: 231 EKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDL 290
Query: 99 MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
M R +W +I + + G EAL LF +MQ + P+ L+S+LS CA L +L YG
Sbjct: 291 MEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYG 350
Query: 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218
V++++ + D + + L+ MY KCG + A VF + KD+ + S I G A +
Sbjct: 351 RQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASH 410
Query: 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDH 278
G EA ++F M S G P+ ++ IA+L+ACS+ G +E+G F SM + P ++H
Sbjct: 411 GLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEH 470
Query: 279 YACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338
Y+C VD+LGRAG +++A I SM +KPD +WG LLGAC+ H ++ + L E++
Sbjct: 471 YSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFENE 530
Query: 339 QNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGD-RS 397
++ G Y+LLS+I K + VRK MR + + PGCS IE+ VH F G ++
Sbjct: 531 PDNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFTRGGIKN 590
Query: 398 HEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTK 457
H + I E+ ++ GY+ + V+ D++EEEK + HSE+LA+A+GL+
Sbjct: 591 HPEQAMILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKLP 650
Query: 458 PGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
G IR++KN+R+C DCH+A+KL+SKV +R+I +RD +HHF +G CSC +YW
Sbjct: 651 EGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNGECSCRDYW 704
Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/345 (25%), Positives = 171/345 (49%), Gaps = 23/345 (6%)
Query: 15 NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDV 74
NS++ Y G ++AR +FDE + +VVSWN +++GY++N I+E +F+ MP+RN V
Sbjct: 52 NSIVSGYFSNGLPKEARQLFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVV 111
Query: 75 SWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD 134
SW +++ G ++ G V +A +F +MP+R+ VSW V+ G +GR +A L+ M D
Sbjct: 112 SWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVKD 171
Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
+ ++ +++ + G +D ++ ++++ + + +I Y + +D+A
Sbjct: 172 VVAST----NMIGGLCREGRVDEARLIFDEMRERNV----VTWTTMITGYRQNNRVDVAR 223
Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254
++F +K ++TS + G ++G +A E FE M K + I+ A++ +G
Sbjct: 224 KLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPV----IACNAMIVGFGEVG 279
Query: 255 WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP---MKPDNVIW 311
+ K F M D + M+ R G EA + A M ++P
Sbjct: 280 EISKARRVFDLMEDRDNAT-----WRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSL 334
Query: 312 GTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYI--LLSNIYVE 354
++L C + + G+++ L+ Q D Y+ +L +YV+
Sbjct: 335 ISILSVCATLASLQYGRQVHAHLVRC-QFDDDVYVASVLMTMYVK 378
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 138/300 (46%), Gaps = 18/300 (6%)
Query: 18 IQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWN 77
I S G++ +AR FD + SWNS+++GY NG E +LFD+M +RN VSWN
Sbjct: 24 ISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNVVSWN 83
Query: 78 SILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEP 137
++ G ++ + +A VF MP+R++VSW ++ G+ Q G EA +LF M E
Sbjct: 84 GLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMP----ER 139
Query: 138 NSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVF 197
N + G +D +Y + K D + +I + G +D A +F
Sbjct: 140 NEVSWTVMFGGLIDDGRIDKARKLYDMMPVK----DVVASTNMIGGLCREGRVDEARLIF 195
Query: 198 HSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVE 257
+++V +T+ I G N A +LFE M K +S+ ++L + G +E
Sbjct: 196 DEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEK----TEVSWTSMLLGYTLSGRIE 251
Query: 258 KGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGA 317
F+V +KP + A +V G G + +A M + DN W ++ A
Sbjct: 252 DA----EEFFEVMPMKPVIACNAMIVG-FGEVGEISKARRVFDLMEDR-DNATWRGMIKA 305
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 83/164 (50%), Gaps = 12/164 (7%)
Query: 2 VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
+V+ F DV+V + L+ Y CG + A+ VFD D++ WNS+I+GY +G E
Sbjct: 357 LVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEA 416
Query: 62 LKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVV-----LIS 112
LK+F +MP N V+ +IL G +++ +F M + V+ V +
Sbjct: 417 LKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVD 476
Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALD 156
+ G+ +A+ L ++S+ ++P++ + +LL AC LD
Sbjct: 477 MLGRAGQVDKAMEL---IESMTIKPDATVWGALLGACKTHSRLD 517
Score = 38.5 bits (88), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 65/143 (45%), Gaps = 14/143 (9%)
Query: 177 CAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGI 236
C+ I ++ G I+ A + F S K + ++ S + G NG EA +LF+ M + +
Sbjct: 20 CSFEISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNV 79
Query: 237 SPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELD--HYACMVDLLGRAGLLEE 294
+S+ ++S G+++ +V + PE + + MV + G++ E
Sbjct: 80 ----VSWNGLVS-----GYIKNRMIV--EARNVFELMPERNVVSWTAMVKGYMQEGMVGE 128
Query: 295 AENFIASMPMKPDNVIWGTLLGA 317
AE+ MP + + V W + G
Sbjct: 129 AESLFWRMPER-NEVSWTVMFGG 150
>sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510
OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1
Length = 825
Score = 372 bits (956), Expect = e-102, Method: Compositional matrix adjust.
Identities = 193/551 (35%), Positives = 302/551 (54%), Gaps = 40/551 (7%)
Query: 1 MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
+ V F+ D V N ++ FYS RV + R +FDE +LD VS+N +I+ Y + +
Sbjct: 275 LSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEA 334
Query: 61 GLKLFDKMP----QRNDVSWNSILGGLVRFGSV--------------------------- 89
L F +M R + + ++L S+
Sbjct: 335 SLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVD 394
Query: 90 --------DDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
++A +F +P+R+ VSW LISG+ Q G L LF +M+ +L + +
Sbjct: 395 MYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQST 454
Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
++L A A +L G ++++I + + + L+DMYAKCGSI A+QVF
Sbjct: 455 FATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMP 514
Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261
D++ ++ + I A NG A F M G+ PDS+S + VL+ACSH G+VE+G
Sbjct: 515 DRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTE 574
Query: 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH 321
YF +M ++GI P+ HYACM+DLLGR G EAE + MP +PD ++W ++L ACR+H
Sbjct: 575 YFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIH 634
Query: 322 RNAEMGQRIGNMLIESDQNHDGR-YILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCS 380
+N + +R L ++ D Y+ +SNIY + E +V+K MR+R IK+ P S
Sbjct: 635 KNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYS 694
Query: 381 LIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVI 440
+E++ +H F + D++H EI + E+ +I+ GY +T SV+ D++E+ K +
Sbjct: 695 WVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDEQMKIESL 754
Query: 441 GYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF 500
YHSE+LA+AF LI T G I ++KN+R C DCH+A+KL+SK+ KR+I++RD +HHF
Sbjct: 755 KYHSERLAVAFALISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDTSRFHHF 814
Query: 501 EDGSCSCLEYW 511
+G CSC +YW
Sbjct: 815 SEGVCSCGDYW 825
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 109/228 (47%), Gaps = 5/228 (2%)
Query: 26 RVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVR 85
R DAR + D D N ++ +R G++ K++D+MP +N VS N+++ G V+
Sbjct: 33 RRVDAR-IIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVK 91
Query: 86 FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM--QSLDLEPNSAILV 143
G V A +F+ MP R++V+W +L+ +A+N EA LFR+M S P+
Sbjct: 92 TGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFT 151
Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA--LIDMYAKCGSIDLAMQVFHSYG 201
+LL C + V+++ K + L + L+ Y + +DLA +F
Sbjct: 152 TLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIP 211
Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249
+KD + + I G +G E+ LF M+ G P ++ VL A
Sbjct: 212 EKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKA 259
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 370 bits (949), Expect = e-101, Method: Compositional matrix adjust.
Identities = 199/550 (36%), Positives = 317/550 (57%), Gaps = 42/550 (7%)
Query: 2 VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDL-DVVSWNSMINGYVRNGEILE 60
VVK F +D ++ +L+ YS C + DA +F E + +VVSW +MI+G+++N E
Sbjct: 321 VVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEE 380
Query: 61 GLKLFDKMPQR----NDVSWNSILGGL-------------------------------VR 85
+ LF +M ++ N+ +++ IL L V+
Sbjct: 381 AVDLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVK 440
Query: 86 FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
G V++A +VF+ + + +V+W +++G+AQ G + A+ +F E+ ++PN S+
Sbjct: 441 LGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSI 500
Query: 146 LSACAQLGA-LDYGNWVYSYIQKKCIKLDSILC--AALIDMYAKCGSIDLAMQVFHSYGD 202
L+ CA A + G + + K +LDS LC +AL+ MYAK G+I+ A +VF +
Sbjct: 501 LNVCAATNASMGQGKQFHGFAIKS--RLDSSLCVSSALLTMYAKKGNIESAEEVFKRQRE 558
Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYY 262
KD+ ++ S I G A +G +++A ++F+ MK + + D +++I V +AC+H G VE+G Y
Sbjct: 559 KDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKY 618
Query: 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR 322
F M I P +H +CMVDL RAG LE+A I +MP + IW T+L ACRVH+
Sbjct: 619 FDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHK 678
Query: 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382
E+G+ +I Y+LLSN+Y E+ + +VRK M +R +K+ PG S I
Sbjct: 679 KTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWI 738
Query: 383 ELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442
E+ + FLAGDRSH +IY E++ ++K+ GY +T V+ DI++E KE V+
Sbjct: 739 EVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQ 798
Query: 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHF-E 501
HSE+LA+AFGLI T GS + I+KN+R+C DCH +KL++K+ +R+I +RD +HHF
Sbjct: 799 HSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSS 858
Query: 502 DGSCSCLEYW 511
DG CSC ++W
Sbjct: 859 DGVCSCGDFW 868
Score = 140 bits (353), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 104/368 (28%), Positives = 171/368 (46%), Gaps = 53/368 (14%)
Query: 1 MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
+VVKN + V NSLI Y CG VR AR +FD+++ VV+WNSMI+GY NG LE
Sbjct: 219 VVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLE 278
Query: 61 GLKLFDKMP----QRNDVSWNSILG----------------GLVRFG------------- 87
L +F M + ++ S+ S++ +V++G
Sbjct: 279 ALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMV 338
Query: 88 ------SVDDACRVFNQMP-KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
++ DA R+F ++ ++VSW +ISGF QN +EA+ LF EM+ + PN
Sbjct: 339 AYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEF 398
Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200
+L+A + + V++ + K + S + AL+D Y K G ++ A +VF
Sbjct: 399 TYSVILTALPVISPSE----VHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGI 454
Query: 201 GDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260
DKD+ A+++ + G A G + A ++F + GI P+ ++ ++L+ C+
Sbjct: 455 DDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQG 514
Query: 261 YYFHSMFDVHGIKPELDHYAC----MVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLG 316
FH IK LD C ++ + + G +E AE K D V W +++
Sbjct: 515 KQFHGF----AIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREK-DLVSWNSMIS 569
Query: 317 ACRVHRNA 324
H A
Sbjct: 570 GYAQHGQA 577
Score = 115 bits (289), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 114/449 (25%), Positives = 191/449 (42%), Gaps = 85/449 (18%)
Query: 3 VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
+K F DV V SL+ Y +D R VFDE + +VV+W ++I+GY RN E L
Sbjct: 120 IKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVL 179
Query: 63 KLFDKM----PQRNDVSWNSILGGL----------------------------------- 83
LF +M Q N ++ + LG L
Sbjct: 180 TLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLY 239
Query: 84 VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143
++ G+V A +F++ +S+V+W +ISG+A NG EAL +F M+ + + +
Sbjct: 240 LKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFA 299
Query: 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG-D 202
S++ CA L L + ++ + K D + AL+ Y+KC ++ A+++F G
Sbjct: 300 SVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCV 359
Query: 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS----------- 251
+V ++T+ I G N EA +LF MK KG+ P+ +Y +L+A
Sbjct: 360 GNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQV 419
Query: 252 --------------------HLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGL 291
LG VE+ F + D ++ ++ M+ + G
Sbjct: 420 VKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDD-----KDIVAWSAMLAGYAQTGE 474
Query: 292 LEEAENFIASMP---MKPDNVIWGTLLGACRVHRNAEMGQ--RIGNMLIES--DQNHDGR 344
E A + +KP+ + ++L C NA MGQ + I+S D +
Sbjct: 475 TEAAIKMFGELTKGGIKPNEFTFSSILNVC-AATNASMGQGKQFHGFAIKSRLDSSLCVS 533
Query: 345 YILLSNIYVETLKGENAEEVRKTMRKRKI 373
LL+ +Y + E+AEEV K R++ +
Sbjct: 534 SALLT-MYAKKGNIESAEEVFKRQREKDL 561
Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/267 (27%), Positives = 126/267 (47%), Gaps = 39/267 (14%)
Query: 26 RVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLF---DKMPQRNDVS-WNSILG 81
R+ +A +FD+S D S+ S++ G+ R+G E +LF ++ D S ++S+L
Sbjct: 42 RLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLK 101
Query: 82 ----------------GLVRFGSVDDAC-------------------RVFNQMPKRSLVS 106
++FG +DD +VF++M +R++V+
Sbjct: 102 VSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVT 161
Query: 107 WVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQ 166
W LISG+A+N E L LF MQ+ +PNS + L A+ G G V++ +
Sbjct: 162 WTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVV 221
Query: 167 KKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFE 226
K + + +LI++Y KCG++ A +F K V + S I G A NG +EA
Sbjct: 222 KNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALG 281
Query: 227 LFENMKSKGISPDSISYIAVLSACSHL 253
+F +M+ + S+ +V+ C++L
Sbjct: 282 MFYSMRLNYVRLSESSFASVIKLCANL 308
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 115/239 (48%), Gaps = 15/239 (6%)
Query: 86 FGSVD-----DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
FG+V +A +F++ P R S++ L+ GF+++GR +EA LF + L +E + +
Sbjct: 35 FGTVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCS 94
Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKL----DSILCAALIDMYAKCGSIDLAMQV 196
I S+L A L +G ++ +CIK D + +L+D Y K + +V
Sbjct: 95 IFSSVLKVSATLCDELFGRQLHC----QCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKV 150
Query: 197 FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWV 256
F +++V +T+ I G A N + E LF M+++G P+S ++ A L + G
Sbjct: 151 FDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVG 210
Query: 257 EKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
+G H++ +G+ + +++L + G + +A +K V W +++
Sbjct: 211 GRGL-QVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVK-SVVTWNSMI 267
>sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2
SV=2
Length = 638
Score = 369 bits (948), Expect = e-101, Method: Compositional matrix adjust.
Identities = 207/557 (37%), Positives = 316/557 (56%), Gaps = 57/557 (10%)
Query: 11 VFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRN-GEILEGLKLFDKMP 69
+F+ ++Q S V A VFD ++ WN++I + E L+ KM
Sbjct: 83 LFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKML 142
Query: 70 QRNDVSWNS------------ILG------------------------GLVRF----GSV 89
+R + S + I G GL+ G +
Sbjct: 143 ERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCL 202
Query: 90 DDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
D A +VF++MP+RSLVSW +I + G AL LFREMQ EP+ + S+LSAC
Sbjct: 203 DLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQR-SFEPDGYTMQSVLSAC 261
Query: 150 AQLGALDYGNWVYSYIQKKC---IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS 206
A LG+L G W ++++ +KC + +D ++ +LI+MY KCGS+ +A QVF +D++
Sbjct: 262 AGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLA 321
Query: 207 AYTSAIFGLAMNGHSIEAFELFENM--KSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264
++ + I G A +G + EA F+ M K + + P+S++++ +L AC+H G+V KG YF
Sbjct: 322 SWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFD 381
Query: 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC-RVHRN 323
M + I+P L+HY C+VDL+ RAG + EA + + SMPMKPD VIW +LL AC + +
Sbjct: 382 MMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGAS 441
Query: 324 AEMGQRIGNMLI-------ESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRA 376
E+ + I +I S+ N G Y+LLS +Y + + VRK M + I++
Sbjct: 442 VELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKE 501
Query: 377 PGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVE-TRSVMFDIEEE- 434
PGCS IE++G+ HEF AGD SH +T++IYQ + I ++++ GY + +++ + D +
Sbjct: 502 PGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDG 561
Query: 435 EKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDR 494
KE + HSE+LA+AFGLI P + IRI KN+R+C+DCH KL+SKVF +I +RDR
Sbjct: 562 SKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDR 621
Query: 495 KHYHHFEDGSCSCLEYW 511
+HHF+DGSCSCL+YW
Sbjct: 622 VRFHHFKDGSCSCLDYW 638
>sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 623
Score = 369 bits (948), Expect = e-101, Method: Compositional matrix adjust.
Identities = 199/552 (36%), Positives = 312/552 (56%), Gaps = 49/552 (8%)
Query: 2 VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVS--WNSMINGYVRNGEIL 59
V K + FV +LI Y CG V DAR VF+E+ +S +N++I+GY N ++
Sbjct: 79 VTKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVT 138
Query: 60 EGLKLFDKMPQRNDVSWNSIL--------------------------GGL---------- 83
+ +F +M + VS +S+ GGL
Sbjct: 139 DAAYMFRRM-KETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSF 197
Query: 84 ----VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS 139
++ GSV+ R+F++MP + L++W +ISG++QNG + L L+ +M+S + P+
Sbjct: 198 ITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDP 257
Query: 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
LVS+LS+CA LGA G+ V ++ + + A I MYA+CG++ A VF
Sbjct: 258 FTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDI 317
Query: 200 YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259
K + ++T+ I M+G LF++M +GI PD ++ VLSACSH G +KG
Sbjct: 318 MPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKG 377
Query: 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACR 319
F +M + ++P +HY+C+VDLLGRAG L+EA FI SMP++PD +WG LLGAC+
Sbjct: 378 LELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACK 437
Query: 320 VHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGC 379
+H+N +M + +IE + N+ G Y+L+SNIY ++ E +R MR+R ++ PG
Sbjct: 438 IHKNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGY 497
Query: 380 SLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETV 439
S +E G VH FLAGDRSHE+T+E+++ +E+ + N++ EE +
Sbjct: 498 SYVEHKGRVHLFLAGDRSHEQTEEVHRMLDELETSVMELAGNMDCD------RGEEVSST 551
Query: 440 IGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHH 499
HSE+LA+AFG++ + PG+ I ++KN+R+C DCH +K VSK+ R+ +RD +H+
Sbjct: 552 TREHSERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFLKQVSKIVDRQFVVRDASRFHY 611
Query: 500 FEDGSCSCLEYW 511
F+DG CSC +YW
Sbjct: 612 FKDGVCSCKDYW 623
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 74/158 (46%), Gaps = 12/158 (7%)
Query: 1 MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
+V N F +VFV N+ I Y+ CG + AR VFD +VSW +MI Y +G
Sbjct: 282 LVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEI 341
Query: 61 GLKLFDKMPQR----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVS-----WVVLI 111
GL LFD M +R + + +L G D +F M + + + L+
Sbjct: 342 GLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLV 401
Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
+ GR EA+ ++S+ +EP+ A+ +LL AC
Sbjct: 402 DLLGRAGRLDEAMEF---IESMPVEPDGAVWGALLGAC 436
Score = 65.9 bits (159), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 86/201 (42%), Gaps = 3/201 (1%)
Query: 107 WVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQ 166
W V + A E+++L+R M P++ +L +CA L G ++ ++
Sbjct: 21 WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80
Query: 167 KKCIKLDSILCAALIDMYAKCGSIDLAMQVF--HSYGDKDVSAYTSAIFGLAMNGHSIEA 224
K + + + ALI MY KCG + A +VF + + Y + I G N +A
Sbjct: 81 KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDA 140
Query: 225 FELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVD 284
+F MK G+S DS++ + ++ C+ ++ G H G+ E+ +
Sbjct: 141 AYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLG-RSLHGQCVKGGLDSEVAVLNSFIT 199
Query: 285 LLGRAGLLEEAENFIASMPMK 305
+ + G +E MP+K
Sbjct: 200 MYMKCGSVEAGRRLFDEMPVK 220
>sp|P93011|PP182_ARATH Pentatricopeptide repeat-containing protein At2g33760
OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1
Length = 583
Score = 369 bits (948), Expect = e-101, Method: Compositional matrix adjust.
Identities = 183/441 (41%), Positives = 282/441 (63%), Gaps = 9/441 (2%)
Query: 79 ILGGLVRF----GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD 134
+ LV F G ++ A +VF++MP++S+V+W L+SGF QNG EA+ +F +M+
Sbjct: 144 VQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESG 203
Query: 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194
EP+SA VSLLSACAQ GA+ G+WV+ YI + + L+ L ALI++Y++CG + A
Sbjct: 204 FEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAR 263
Query: 195 QVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK-GISPDSISYIAVLSACSHL 253
+VF + +V+A+T+ I +G+ +A ELF M+ G P++++++AVLSAC+H
Sbjct: 264 EVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHA 323
Query: 254 GWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMK---PDNVI 310
G VE+G + M + + P ++H+ CMVD+LGRAG L+EA FI + +
Sbjct: 324 GLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATGKATAPAL 383
Query: 311 WGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370
W +LGAC++HRN ++G I LI + ++ G +++LSNIY + K + +R M +
Sbjct: 384 WTAMLGACKMHRNYDLGVEIAKRLIALEPDNPGHHVMLSNIYALSGKTDEVSHIRDGMMR 443
Query: 371 RKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFD 430
+++ G S+IE++ + F GD SH++T EIY++ E ++ + K GY + VM
Sbjct: 444 NNLRKQVGYSVIEVENKTYMFSMGDESHQETGEIYRYLETLISRCKEIGYAPVSEEVMHQ 503
Query: 431 IEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKIS 490
+EEEEKE + YHSEKLA+AFGL+ T I IVKN+RIC DCHSA K +S V R+I+
Sbjct: 504 VEEEEKEFALRYHSEKLAVAFGLLKT-VDVAITIVKNLRICEDCHSAFKYISIVSNRQIT 562
Query: 491 IRDRKHYHHFEDGSCSCLEYW 511
+RD+ +HHF++GSCSCL+YW
Sbjct: 563 VRDKLRFHHFQNGSCSCLDYW 583
Score = 102 bits (253), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 102/203 (50%), Gaps = 4/203 (1%)
Query: 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA 179
P +A +R M S ++ P++ S++ +CA L AL G V+ + LD+ + AA
Sbjct: 88 PLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAA 147
Query: 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239
L+ Y+KCG ++ A QVF +K + A+ S + G NG + EA ++F M+ G PD
Sbjct: 148 LVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPD 207
Query: 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI 299
S +++++LSAC+ G V G + H G+ + +++L R G + +A
Sbjct: 208 SATFVSLLSACAQTGAVSLG-SWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVF 266
Query: 300 ASMPMKPDNV-IWGTLLGACRVH 321
MK NV W ++ A H
Sbjct: 267 DK--MKETNVAAWTAMISAYGTH 287
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 120/258 (46%), Gaps = 48/258 (18%)
Query: 3 VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
V + F D +V+ +L+ FYS CG + AR VFD + +V+WNS+++G+ +NG E +
Sbjct: 134 VVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAI 193
Query: 63 KLFDKM-------------------PQRNDVSWNS------ILGGL-------------- 83
++F +M Q VS S I GL
Sbjct: 194 QVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLY 253
Query: 84 VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQ-SLDLEPNSAIL 142
R G V A VF++M + ++ +W +IS + +G ++A+ LF +M+ PN+
Sbjct: 254 SRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTF 313
Query: 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI---LCAALIDMYAKCGSIDLAMQVFH- 198
V++LSACA G ++ G VY + K + + +C ++DM + G +D A + H
Sbjct: 314 VAVLSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVC--MVDMLGRAGFLDEAYKFIHQ 371
Query: 199 --SYGDKDVSAYTSAIFG 214
+ G A +A+ G
Sbjct: 372 LDATGKATAPALWTAMLG 389
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 77/167 (46%), Gaps = 10/167 (5%)
Query: 2 VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
++ +V + +LI YS CG V AR VFD+ + +V +W +MI+ Y +G +
Sbjct: 234 IISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQA 293
Query: 62 LKLFDKM-----PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKR-----SLVSWVVLI 111
++LF+KM P N+V++ ++L G V++ V+ +M K + V ++
Sbjct: 294 VELFNKMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMV 353
Query: 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158
+ G EA ++ + A+ ++L AC D G
Sbjct: 354 DMLGRAGFLDEAYKFIHQLDATGKATAPALWTAMLGACKMHRNYDLG 400
>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3
SV=1
Length = 628
Score = 369 bits (946), Expect = e-101, Method: Compositional matrix adjust.
Identities = 195/552 (35%), Positives = 311/552 (56%), Gaps = 43/552 (7%)
Query: 2 VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
++K + +++ L+ FY C + DAR V DE + +VVSW +MI+ Y + G E
Sbjct: 78 MIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEA 137
Query: 62 LKLFDKMPQRND-------------------------------VSWN---------SILG 81
L +F +M R+D V WN S+L
Sbjct: 138 LTVFAEM-MRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLD 196
Query: 82 GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141
+ G + +A +F +P+R +VS +I+G+AQ G +EAL +F + S + PN
Sbjct: 197 MYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVT 256
Query: 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201
SLL+A + L LD+G + ++ ++ + ++L +LIDMY+KCG++ A ++F +
Sbjct: 257 YASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMP 316
Query: 202 DKDVSAYTSAIFGLAMNGHSIEAFELFENMK-SKGISPDSISYIAVLSACSHLGWVEKGF 260
++ ++ + + G + +G E ELF M+ K + PD+++ +AVLS CSH + G
Sbjct: 317 ERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGL 376
Query: 261 YYFHSMF-DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACR 319
F M +G KP +HY C+VD+LGRAG ++EA FI MP KP + G+LLGACR
Sbjct: 377 NIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACR 436
Query: 320 VHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGC 379
VH + ++G+ +G LIE + + G Y++LSN+Y + + VR M ++ + + PG
Sbjct: 437 VHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGRWADVNNVRAMMMQKAVTKEPGR 496
Query: 380 SLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETV 439
S I+ + +H F A DR+H + +E+ +EI K+K GY + V++D++EE+KE +
Sbjct: 497 SWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDLSCVLYDVDEEQKEKM 556
Query: 440 IGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHH 499
+ HSEKLAL FGLI T G IR+ KN+RIC DCH+ K+ SKVF+R++S+RD+ +H
Sbjct: 557 LLGHSEKLALTFGLIATGEGIPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQ 616
Query: 500 FEDGSCSCLEYW 511
DG CSC +YW
Sbjct: 617 IVDGICSCGDYW 628
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 121/256 (47%), Gaps = 42/256 (16%)
Query: 1 MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
++VK ++ +FV +SL+ Y+ G++++AR +F+ + DVVS ++I GY + G E
Sbjct: 178 LIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEE 237
Query: 61 GLKLFDKMPQR----NDVSWNSILGGL--------------------------------- 83
L++F ++ N V++ S+L L
Sbjct: 238 ALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLID 297
Query: 84 --VRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD-LEPNSA 140
+ G++ A R+F+ MP+R+ +SW ++ G++++G +E L LFR M+ ++P++
Sbjct: 298 MYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAV 357
Query: 141 ILVSLLSACAQLGALDYGNWVYSYI--QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFH 198
L+++LS C+ D G ++ + + K + ++DM + G ID A +
Sbjct: 358 TLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIK 417
Query: 199 SYGDKDVSAYTSAIFG 214
K + ++ G
Sbjct: 418 RMPSKPTAGVLGSLLG 433
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 101/219 (46%), Gaps = 22/219 (10%)
Query: 94 RVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153
R F+ P ++ ++ IS NGR +EAL EM L E +LL+AC
Sbjct: 10 RSFSSSPTNYVLQTILPISQLCSNGRLQEALL---EMAMLGPEMGFHGYDALLNACLDKR 66
Query: 154 ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIF 213
AL G V++++ K + L L+ Y KC ++ A +V +K+V ++T+ I
Sbjct: 67 ALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMIS 126
Query: 214 GLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC---SHLGWVEKGFYYFHSMFDVH 270
+ GHS EA +F M P+ ++ VL++C S LG ++ +H
Sbjct: 127 RYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQ----------IH 176
Query: 271 G--IKPELDHY----ACMVDLLGRAGLLEEAENFIASMP 303
G +K D + + ++D+ +AG ++EA +P
Sbjct: 177 GLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLP 215
>sp|Q8S9M4|PP198_ARATH Pentatricopeptide repeat-containing protein At2g41080
OS=Arabidopsis thaliana GN=PCMP-H29 PE=2 SV=2
Length = 650
Score = 369 bits (946), Expect = e-101, Method: Compositional matrix adjust.
Identities = 202/537 (37%), Positives = 298/537 (55%), Gaps = 40/537 (7%)
Query: 15 NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP----Q 70
N LI Y G + +AR VFDE D + +WN+MI G ++ EGL LF +M
Sbjct: 114 NILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFS 173
Query: 71 RNDVSWNSILGG-----------------------------------LVRFGSVDDACRV 95
++ + S+ G +R G + D V
Sbjct: 174 PDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIV 233
Query: 96 FNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGAL 155
MP R+LV+W LI G AQNG P+ L L++ M+ PN V++LS+C+ L
Sbjct: 234 IRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIR 293
Query: 156 DYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGL 215
G +++ K + ++LI MY+KCG + A + F D+D ++S I
Sbjct: 294 GQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAY 353
Query: 216 AMNGHSIEAFELFENMKSK-GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP 274
+G EA ELF M + + + ++++ +L ACSH G +KG F M + +G KP
Sbjct: 354 GFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKP 413
Query: 275 ELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNML 334
L HY C+VDLLGRAG L++AE I SMP+K D VIW TLL AC +H+NAEM QR+ +
Sbjct: 414 GLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEI 473
Query: 335 IESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAG 394
++ D N Y+LL+N++ + + EVRK+MR + +K+ G S E G VH+F G
Sbjct: 474 LQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMG 533
Query: 395 DRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLI 454
DRS K++EIY + +E+ ++K GY +T SV+ D++EEEKE+ + HSEKLA+AF L+
Sbjct: 534 DRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALM 593
Query: 455 CTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
G+ IRI+KN+R+CSDCH A K +S + R+I++RD +HHF +G CSC +YW
Sbjct: 594 ILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGDYW 650
Score = 129 bits (324), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 92/358 (25%), Positives = 161/358 (44%), Gaps = 33/358 (9%)
Query: 1 MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
++V + F+ D F+ N L+ YS G A V+ + +S N +INGYVR G+++
Sbjct: 69 LLVVSGFSSDKFICNHLMSMYSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVN 128
Query: 61 GLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRP 120
K+FD+MP R +WN+++ GL++F FN+
Sbjct: 129 ARKVFDEMPDRKLTTWNAMIAGLIQFE--------FNE---------------------- 158
Query: 121 KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180
E L+LFREM L P+ L S+ S A L ++ G ++ Y K ++LD ++ ++L
Sbjct: 159 -EGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSL 217
Query: 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240
MY + G + V S +++ A+ + I G A NG L++ MK G P+
Sbjct: 218 AHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNK 277
Query: 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300
I+++ VLS+CS L +G H+ G + + ++ + + G L +A +
Sbjct: 278 ITFVTVLSSCSDLAIRGQG-QQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFS 336
Query: 301 SMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKG 358
D V+W +++ A H + + N + E L+ +Y + G
Sbjct: 337 ERE-DEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSG 393
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 95/242 (39%), Gaps = 37/242 (15%)
Query: 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSY 164
V I+ G +EA FR L++ N+++ + +C +L G ++
Sbjct: 14 VDPATAIATLCSKGNLREAFQRFR----LNIFTNTSLFTPFIQSCTTRQSLPSGKQLHCL 69
Query: 165 IQKKCIKLDSILCAALIDMYAKCGSI-----------------------------DL--A 193
+ D +C L+ MY+K G DL A
Sbjct: 70 LVVSGFSSDKFICNHLMSMYSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNA 129
Query: 194 MQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL 253
+VF D+ ++ + + I GL + E LF M G SPD + +V S + L
Sbjct: 130 RKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGL 189
Query: 254 GWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGT 313
V G H +G++ +L + + + R G L++ E I SMP++ + V W T
Sbjct: 190 RSVSIG-QQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVR-NLVAWNT 247
Query: 314 LL 315
L+
Sbjct: 248 LI 249
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/239 (21%), Positives = 96/239 (40%), Gaps = 41/239 (17%)
Query: 2 VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEG 61
+K D+ V +SL Y G+++D V ++V+WN++I G +NG
Sbjct: 202 TIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETV 261
Query: 62 LKLFDKMP----QRNDVSWNSILGG----------------------------------- 82
L L+ M + N +++ ++L
Sbjct: 262 LYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISM 321
Query: 83 LVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREM-QSLDLEPNSAI 141
+ G + DA + F++ V W +IS + +G+ EA+ LF M + ++E N
Sbjct: 322 YSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVA 381
Query: 142 LVSLLSACAQLGALDYGNWVYS-YIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199
++LL AC+ G D G ++ ++K K ++D+ + G +D A + S
Sbjct: 382 FLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRS 440
>sp|Q9LSL8|PP446_ARATH Pentatricopeptide repeat-containing protein At5g65570
OS=Arabidopsis thaliana GN=PCMP-H47 PE=2 SV=1
Length = 738
Score = 366 bits (940), Expect = e-100, Method: Compositional matrix adjust.
Identities = 214/543 (39%), Positives = 306/543 (56%), Gaps = 45/543 (8%)
Query: 10 DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKM- 68
+VFV ++L+ Y G+ R+A+ V D ++ DVV ++I GY + GE E +K F M
Sbjct: 200 NVFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSML 259
Query: 69 ---PQRNDVSWNSIL---GGLVRFGS--------------------------------VD 90
Q N+ ++ S+L G L G+ VD
Sbjct: 260 VEKVQPNEYTYASVLISCGNLKDIGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVD 319
Query: 91 DACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150
D+ RVF + + VSW LISG QNGR + AL FR+M ++PNS L S L C+
Sbjct: 320 DSLRVFKCIEYPNQVSWTSLISGLVQNGREEMALIEFRKMMRDSIKPNSFTLSSALRGCS 379
Query: 151 QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210
L + G ++ + K D + LID+Y KCG D+A VF + + DV + +
Sbjct: 380 NLAMFEEGRQIHGIVTKYGFDRDKYAGSGLIDLYGKCGCSDMARLVFDTLSEVDVISLNT 439
Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
I+ A NG EA +LFE M + G+ P+ ++ ++VL AC++ VE+G F S F
Sbjct: 440 MIYSYAQNGFGREALDLFERMINLGLQPNDVTVLSVLLACNNSRLVEEGCELFDS-FRKD 498
Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRI 330
I DHYACMVDLLGRAG LEEAE + + + PD V+W TLL AC+VHR EM +RI
Sbjct: 499 KIMLTNDHYACMVDLLGRAGRLEEAE-MLTTEVINPDLVLWRTLLSACKVHRKVEMAERI 557
Query: 331 GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHE 390
++E + +G IL+SN+Y T K E++ M+ K+K+ P S +E++ H
Sbjct: 558 TRKILEIEPGDEGTLILMSNLYASTGKWNRVIEMKSKMKDMKLKKNPAMSWVEINKETHT 617
Query: 391 FLAGDR-SHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMF-DIEEEEKETVIGYHSEKLA 448
F+AGD SH +++I + EE++KK K+ GY VE +S +F D+EE KE + HSEKLA
Sbjct: 618 FMAGDLFSHPNSEQILENLEELIKKSKDLGY-VEDKSCVFQDMEETAKERSLHQHSEKLA 676
Query: 449 LAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCL 508
+AF + G IRI+KN+R+C DCHS +K+VS+V KR+I RD K +HHF DGSCSC
Sbjct: 677 IAFA-VWRNVGGSIRILKNLRVCVDCHSWIKIVSRVMKREIICRDSKRFHHFRDGSCSCG 735
Query: 509 EYW 511
+YW
Sbjct: 736 DYW 738
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/309 (24%), Positives = 135/309 (43%), Gaps = 45/309 (14%)
Query: 24 CGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRN----------- 72
CG + AR VFD + +V+WNS+I +++ E ++++ M N
Sbjct: 112 CGDIDYARQVFDGMSERHIVTWNSLIAYLIKHRRSKEAVEMYRLMITNNVLPDEYTLSSV 171
Query: 73 -----DVSWN---------SILGGL---------------VRFGSVDDACRVFNQMPKRS 103
D+S +++ GL V+FG +A V +++ ++
Sbjct: 172 FKAFSDLSLEKEAQRSHGLAVILGLEVSNVFVGSALVDMYVKFGKTREAKLVLDRVEEKD 231
Query: 104 LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYS 163
+V LI G++Q G EA+ F+ M ++PN S+L +C L + G ++
Sbjct: 232 VVLITALIVGYSQKGEDTEAVKAFQSMLVEKVQPNEYTYASVLISCGNLKDIGNGKLIHG 291
Query: 164 YIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIE 223
+ K + +L+ MY +C +D +++VF + ++TS I GL NG
Sbjct: 292 LMVKSGFESALASQTSLLTMYLRCSLVDDSLRVFKCIEYPNQVSWTSLISGLVQNGREEM 351
Query: 224 AFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA--C 281
A F M I P+S + + L CS+L E+G H + +G + D YA
Sbjct: 352 ALIEFRKMMRDSIKPNSFTLSSALRGCSNLAMFEEG-RQIHGIVTKYGF--DRDKYAGSG 408
Query: 282 MVDLLGRAG 290
++DL G+ G
Sbjct: 409 LIDLYGKCG 417
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 122/256 (47%), Gaps = 3/256 (1%)
Query: 73 DVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQS 132
++S + ++ ++ G +D A +VF+ M +R +V+W LI+ ++ R KEA+ ++R M +
Sbjct: 99 EISGSKLVDASLKCGDIDYARQVFDGMSERHIVTWNSLIAYLIKHRRSKEAVEMYRLMIT 158
Query: 133 LDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILC-AALIDMYAKCGSID 191
++ P+ L S+ A + L + +++ ++ +AL+DMY K G
Sbjct: 159 NNVLPDEYTLSSVFKAFSDLSLEKEAQRSHGLAVILGLEVSNVFVGSALVDMYVKFGKTR 218
Query: 192 LAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS 251
A V +KDV T+ I G + G EA + F++M + + P+ +Y +VL +C
Sbjct: 219 EAKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLVEKVQPNEYTYASVLISCG 278
Query: 252 HLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIW 311
+L + G H + G + L ++ + R L++++ + P+ V W
Sbjct: 279 NLKDIGNG-KLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSLRVFKCIEY-PNQVSW 336
Query: 312 GTLLGACRVHRNAEMG 327
+L+ + EM
Sbjct: 337 TSLISGLVQNGREEMA 352
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 103/233 (44%), Gaps = 41/233 (17%)
Query: 1 MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
++VK+ F + + SL+ Y C V D+ VF + + VSW S+I+G V+NG
Sbjct: 292 LMVKSGFESALASQTSLLTMYLRCSLVDDSLRVFKCIEYPNQVSWTSLISGLVQNGREEM 351
Query: 61 GLKLFDKMPQRNDVSWNSIL------------------------------------GGLV 84
L F KM R+ + NS GL+
Sbjct: 352 ALIEFRKM-MRDSIKPNSFTLSSALRGCSNLAMFEEGRQIHGIVTKYGFDRDKYAGSGLI 410
Query: 85 ----RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140
+ G D A VF+ + + ++S +I +AQNG +EAL LF M +L L+PN
Sbjct: 411 DLYGKCGCSDMARLVFDTLSEVDVISLNTMIYSYAQNGFGREALDLFERMINLGLQPNDV 470
Query: 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLA 193
++S+L AC ++ G ++ +K I L + A ++D+ + G ++ A
Sbjct: 471 TVLSVLLACNNSRLVEEGCELFDSFRKDKIMLTNDHYACMVDLLGRAGRLEEA 523
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 78/157 (49%), Gaps = 12/157 (7%)
Query: 1 MVVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILE 60
+V K F D + + LI Y CG AR VFD ++DV+S N+MI Y +NG E
Sbjct: 393 IVTKYGFDRDKYAGSGLIDLYGKCGCSDMARLVFDTLSEVDVISLNTMIYSYAQNGFGRE 452
Query: 61 GLKLFDKM----PQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV----SWVVLIS 112
L LF++M Q NDV+ S+L V++ C +F+ K ++ + ++
Sbjct: 453 ALDLFERMINLGLQPNDVTVLSVLLACNNSRLVEEGCELFDSFRKDKIMLTNDHYACMVD 512
Query: 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149
+ GR +EA L E+ + P+ + +LLSAC
Sbjct: 513 LLGRAGRLEEAEMLTTEV----INPDLVLWRTLLSAC 545
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 363 bits (932), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 178/470 (37%), Positives = 286/470 (60%), Gaps = 4/470 (0%)
Query: 46 NSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFN----QMPK 101
++MI+ Y ++G + + LF++ N+ + GL R G VD A +F Q +
Sbjct: 291 SAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTME 350
Query: 102 RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161
++VSW +I+G AQNG+ EAL LFREMQ ++PN + S+L AC + AL +G
Sbjct: 351 LNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRST 410
Query: 162 YSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHS 221
+ + + + + + +ALIDMYAKCG I+L+ VF+ K++ + S + G +M+G +
Sbjct: 411 HGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKA 470
Query: 222 IEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYAC 281
E +FE++ + PD IS+ ++LSAC +G ++G+ YF M + +GIKP L+HY+C
Sbjct: 471 KEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSC 530
Query: 282 MVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH 341
MV+LLGRAG L+EA + I MP +PD+ +WG LL +CR+ N ++ + L + +
Sbjct: 531 MVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPEN 590
Query: 342 DGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKT 401
G Y+LLSNIY + +R M +K+ PGCS I++ V+ LAGD+SH +
Sbjct: 591 PGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQI 650
Query: 402 QEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSV 461
+I + +EI K+++ G+ + D+EE+E+E ++ HSEKLA+ FGL+ T G+
Sbjct: 651 DQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTP 710
Query: 462 IRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511
++++KN+RIC DCH+ +K +S R+I IRD +HHF+DG CSC ++W
Sbjct: 711 LQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/355 (25%), Positives = 159/355 (44%), Gaps = 72/355 (20%)
Query: 10 DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
D FV+ S+ Y CGR+ DAR VFD D DVV+ ++++ Y R G + E +++ +M
Sbjct: 150 DAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEME 209
Query: 70 ----QRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALA 125
+ N VSWN IL SGF ++G KEA+
Sbjct: 210 SSGIEANIVSWNGIL-------------------------------SGFNRSGYHKEAVV 238
Query: 126 LFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYA 185
+F+++ L P+ + S+L + L+ G ++ Y+ K+ + D + +A+IDMY
Sbjct: 239 MFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYG 298
Query: 186 KCGS-------------------------------IDLAMQVFHSYGDK----DVSAYTS 210
K G +D A+++F + ++ +V ++TS
Sbjct: 299 KSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTS 358
Query: 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270
I G A NG IEA ELF M+ G+ P+ ++ ++L AC ++ + G VH
Sbjct: 359 IIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVH 418
Query: 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAE 325
+ + + ++D+ + G + ++ MP K + V W +L+ +H A+
Sbjct: 419 -LLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTK-NLVCWNSLMNGFSMHGKAK 471
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 84/181 (46%)
Query: 86 FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145
+ +DA V +P ++ S+ LI + +++ +F M S L P+S +L +L
Sbjct: 63 YNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNL 122
Query: 146 LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205
CA+L A G ++ + +D+ + ++ MY +CG + A +VF DKDV
Sbjct: 123 FKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDV 182
Query: 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHS 265
++ + A G E + M+S GI + +S+ +LS + G+ ++ F
Sbjct: 183 VTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQK 242
Query: 266 M 266
+
Sbjct: 243 I 243
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 80/149 (53%), Gaps = 12/149 (8%)
Query: 10 DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMP 69
+V V ++LI Y+ CGR+ ++ VF+ ++V WNS++NG+ +G+ E + +F+ +
Sbjct: 422 NVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLM 481
Query: 70 QR----NDVSWNSILGGLVRFGSVDDACRVFNQMP-----KRSLVSWVVLISGFAQNGRP 120
+ + +S+ S+L + G D+ + F M K L + +++ + G+
Sbjct: 482 RTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKL 541
Query: 121 KEALALFREMQSLDLEPNSAILVSLLSAC 149
+EA L +EM EP+S + +LL++C
Sbjct: 542 QEAYDLIKEM---PFEPDSCVWGALLNSC 567
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 362 bits (930), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 205/567 (36%), Positives = 304/567 (53%), Gaps = 59/567 (10%)
Query: 2 VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFD----ESDDLDVVSWNSMINGYVRNGE 57
V N DV N+++ YS GR DA +F+ E +DVV+W++ I+GY + G
Sbjct: 286 VFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGL 345
Query: 58 ILEGLKLFDKMP----QRNDVSWNSILGGLVRFGS------------------------- 88
E L + +M + N+V+ S+L G G+
Sbjct: 346 GYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGD 405
Query: 89 -----------------VDDACRVFNQM-PK-RSLVSWVVLISGFAQNGRPKEALALFRE 129
VD A +F+ + PK R +V+W V+I G++Q+G +AL L E
Sbjct: 406 ENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSE 465
Query: 130 MQSLDLE--PNSAILVSLLSACAQLGALDYGNWVYSYI---QKKCIKLDSILCAALIDMY 184
M D + PN+ + L ACA L AL G +++Y Q+ + L C LIDMY
Sbjct: 466 MFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNC--LIDMY 523
Query: 185 AKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYI 244
AKCGSI A VF + K+ +TS + G M+G+ EA +F+ M+ G D ++ +
Sbjct: 524 AKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLL 583
Query: 245 AVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPM 304
VL ACSH G +++G YF+ M V G+ P +HYAC+VDLLGRAG L A I MPM
Sbjct: 584 VVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPM 643
Query: 305 KPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEV 364
+P V+W L CR+H E+G+ + E NHDG Y LLSN+Y + ++ +
Sbjct: 644 EPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRI 703
Query: 365 RKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVET 424
R MR + +K+ PGCS +E F GD++H +EIYQ + +++IK+ GY ET
Sbjct: 704 RSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPET 763
Query: 425 RSVMFDIEEEEKETVIGYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKV 484
+ D+++EEK+ ++ HSEKLALA+G++ T G+ IRI KN+R+C DCH+A +S++
Sbjct: 764 GFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRI 823
Query: 485 FKRKISIRDRKHYHHFEDGSCSCLEYW 511
I +RD +HHF++GSCSC YW
Sbjct: 824 IDHDIILRDSSRFHHFKNGSCSCKGYW 850
Score = 136 bits (343), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 160/335 (47%), Gaps = 41/335 (12%)
Query: 3 VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGL 62
V + ++FV N L+ Y+ CG + +A VF DVVSWN+M+ GY + G + +
Sbjct: 256 VTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAV 315
Query: 63 KLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKE 122
+LF+KM + + K +V+W ISG+AQ G E
Sbjct: 316 RLFEKMQE---------------------------EKIKMDVVTWSAAISGYAQRGLGYE 348
Query: 123 ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKL-------DSI 175
AL + R+M S ++PN L+S+LS CA +GAL +G ++ Y K I L +++
Sbjct: 349 ALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENM 408
Query: 176 LCAALIDMYAKCGSIDLAMQVFHSYGDK--DVSAYTSAIFGLAMNGHSIEAFELFENMKS 233
+ LIDMYAKC +D A +F S K DV +T I G + +G + +A EL M
Sbjct: 409 VINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFE 468
Query: 234 KGIS--PDSISYIAVLSACSHLGWVEKG-FYYFHSMFDVHGIKPELDHYACMVDLLGRAG 290
+ P++ + L AC+ L + G + +++ + P L C++D+ + G
Sbjct: 469 EDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVP-LFVSNCLIDMYAKCG 527
Query: 291 LLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAE 325
+ +A +M M + V W +L+ +H E
Sbjct: 528 SISDARLVFDNM-MAKNEVTWTSLMTGYGMHGYGE 561
Score = 79.3 bits (194), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 106/242 (43%), Gaps = 5/242 (2%)
Query: 79 ILGGLVRFGSVDDACRVFNQMPKR--SLVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136
++ + G + A + + P + W LI + NG + L LF M SL
Sbjct: 65 LISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWT 124
Query: 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196
P++ + AC ++ ++ G ++ + + AL+ MY++C S+ A +V
Sbjct: 125 PDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKV 184
Query: 197 FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK-GISPDSISYIAVLSACSHLGW 255
F DV ++ S I A G A E+F M ++ G PD+I+ + VL C+ LG
Sbjct: 185 FDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGT 244
Query: 256 VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315
G H + + C+VD+ + G+++EA ++M +K D V W ++
Sbjct: 245 HSLG-KQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVK-DVVSWNAMV 302
Query: 316 GA 317
Sbjct: 303 AG 304
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 193,164,618
Number of Sequences: 539616
Number of extensions: 8122993
Number of successful extensions: 27827
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 87
Number of HSP's that attempted gapping in prelim test: 20618
Number of HSP's gapped (non-prelim): 2463
length of query: 511
length of database: 191,569,459
effective HSP length: 122
effective length of query: 389
effective length of database: 125,736,307
effective search space: 48911423423
effective search space used: 48911423423
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)