Query 010405
Match_columns 511
No_of_seqs 692 out of 3755
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 00:08:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010405.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010405hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 8E-112 2E-116 890.6 56.9 510 2-511 149-697 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 3E-105 6E-110 859.9 55.2 505 2-509 314-857 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 3.5E-65 7.5E-70 549.4 31.0 494 3-503 113-676 (857)
4 PLN03218 maturation of RBCL 1; 100.0 1.6E-59 3.5E-64 497.2 41.1 479 3-490 397-912 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 8.9E-59 1.9E-63 488.4 39.0 476 8-504 84-581 (697)
6 PLN03218 maturation of RBCL 1; 100.0 2.3E-55 4.9E-60 465.7 42.5 405 8-426 367-791 (1060)
7 PF14432 DYW_deaminase: DYW fa 100.0 1.5E-31 3.3E-36 209.3 8.4 106 378-501 2-116 (116)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 5.5E-24 1.2E-28 233.3 40.5 358 9-373 497-868 (899)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 3.6E-24 7.7E-29 234.8 38.6 359 7-372 461-833 (899)
10 KOG4626 O-linked N-acetylgluco 99.9 1.4E-21 2.9E-26 185.6 23.9 355 11-373 116-487 (966)
11 PRK11788 tetratricopeptide rep 99.9 1.2E-20 2.6E-25 186.5 30.7 292 83-378 45-354 (389)
12 PRK11788 tetratricopeptide rep 99.9 4.9E-20 1.1E-24 182.1 31.7 285 48-336 41-346 (389)
13 TIGR00990 3a0801s09 mitochondr 99.9 2.3E-19 5.1E-24 186.8 37.7 353 14-370 130-570 (615)
14 PRK15174 Vi polysaccharide exp 99.9 2.9E-18 6.4E-23 178.2 34.7 319 17-341 48-385 (656)
15 KOG4626 O-linked N-acetylgluco 99.8 3.9E-19 8.5E-24 169.1 24.5 343 10-360 149-508 (966)
16 PRK11447 cellulose synthase su 99.8 8.2E-18 1.8E-22 186.6 38.2 347 18-372 276-701 (1157)
17 PRK15174 Vi polysaccharide exp 99.8 1.8E-17 3.9E-22 172.4 37.3 345 22-372 16-382 (656)
18 PRK11447 cellulose synthase su 99.8 1.3E-16 2.8E-21 177.1 40.7 347 18-374 358-744 (1157)
19 PRK10049 pgaA outer membrane p 99.8 2.1E-16 4.5E-21 167.9 40.3 356 14-371 18-456 (765)
20 TIGR00990 3a0801s09 mitochondr 99.8 7.5E-16 1.6E-20 160.6 36.5 324 45-372 130-538 (615)
21 PRK10049 pgaA outer membrane p 99.8 4.9E-15 1.1E-19 157.5 37.5 332 10-345 48-464 (765)
22 PRK14574 hmsH outer membrane p 99.7 7.7E-14 1.7E-18 145.9 40.1 355 16-371 73-513 (822)
23 PRK14574 hmsH outer membrane p 99.7 5.9E-14 1.3E-18 146.8 38.8 349 20-371 43-479 (822)
24 PRK09782 bacteriophage N4 rece 99.7 1.3E-13 2.8E-18 147.2 42.1 282 83-372 386-707 (987)
25 PRK09782 bacteriophage N4 rece 99.7 2.9E-13 6.2E-18 144.6 39.0 339 25-373 356-742 (987)
26 KOG2003 TPR repeat-containing 99.6 2.3E-13 5E-18 125.7 24.8 204 150-357 501-709 (840)
27 PF13429 TPR_15: Tetratricopep 99.6 1.3E-15 2.9E-20 142.9 9.8 256 109-369 13-275 (280)
28 KOG2076 RNA polymerase III tra 99.6 2.8E-12 6E-17 128.4 31.9 312 56-370 153-511 (895)
29 PRK10747 putative protoheme IX 99.6 1.1E-12 2.4E-17 128.9 28.6 276 55-337 97-390 (398)
30 KOG1126 DNA-binding cell divis 99.6 3.8E-13 8.2E-18 130.5 23.5 276 87-372 333-621 (638)
31 PRK10747 putative protoheme IX 99.6 6.4E-12 1.4E-16 123.5 30.6 275 86-370 97-389 (398)
32 KOG4422 Uncharacterized conser 99.6 4.8E-11 1E-15 110.0 32.6 334 35-373 200-592 (625)
33 KOG2002 TPR-containing nuclear 99.6 7.8E-12 1.7E-16 126.1 29.7 360 8-373 267-677 (1018)
34 KOG1155 Anaphase-promoting com 99.5 6.9E-11 1.5E-15 110.1 32.4 326 41-370 163-494 (559)
35 TIGR00540 hemY_coli hemY prote 99.5 3.5E-11 7.6E-16 119.0 32.2 280 54-336 96-398 (409)
36 PF13429 TPR_15: Tetratricopep 99.5 9.7E-14 2.1E-18 130.3 13.3 250 16-268 13-276 (280)
37 KOG2002 TPR-containing nuclear 99.5 1.2E-11 2.5E-16 124.8 26.5 356 14-372 310-746 (1018)
38 TIGR00540 hemY_coli hemY prote 99.5 2.5E-11 5.3E-16 120.0 28.5 276 23-302 96-396 (409)
39 KOG1126 DNA-binding cell divis 99.5 2.8E-12 6.1E-17 124.5 20.9 277 56-342 333-625 (638)
40 KOG0495 HAT repeat protein [RN 99.5 3E-10 6.5E-15 110.0 33.6 362 12-383 517-890 (913)
41 KOG1155 Anaphase-promoting com 99.5 3.3E-10 7.2E-15 105.6 32.0 353 8-368 161-533 (559)
42 KOG1915 Cell cycle control pro 99.5 1.8E-10 3.9E-15 107.5 30.2 353 24-381 86-510 (677)
43 KOG0547 Translocase of outer m 99.5 1.1E-10 2.3E-15 109.5 28.0 349 15-369 119-564 (606)
44 KOG4422 Uncharacterized conser 99.5 5.6E-10 1.2E-14 103.1 31.7 325 8-339 204-592 (625)
45 COG2956 Predicted N-acetylgluc 99.5 9.1E-11 2E-15 104.5 25.7 259 55-317 48-324 (389)
46 KOG2003 TPR repeat-containing 99.4 2.8E-11 6.1E-16 112.1 22.1 256 113-372 428-690 (840)
47 KOG2076 RNA polymerase III tra 99.4 2.4E-10 5.1E-15 114.8 30.0 354 17-371 145-555 (895)
48 KOG4318 Bicoid mRNA stability 99.4 1.1E-11 2.3E-16 123.7 16.9 265 125-429 11-276 (1088)
49 TIGR02521 type_IV_pilW type IV 99.4 1.6E-10 3.5E-15 105.0 22.3 196 174-370 31-231 (234)
50 KOG1173 Anaphase-promoting com 99.4 9.4E-10 2E-14 105.2 27.5 261 103-369 243-516 (611)
51 KOG0495 HAT repeat protein [RN 99.4 8.6E-09 1.9E-13 100.2 33.5 261 105-371 517-782 (913)
52 KOG1840 Kinesin light chain [C 99.3 3E-10 6.5E-15 111.6 23.7 238 106-369 201-477 (508)
53 KOG1173 Anaphase-promoting com 99.3 6.4E-10 1.4E-14 106.3 24.8 283 6-317 239-531 (611)
54 PRK12370 invasion protein regu 99.3 4.9E-10 1.1E-14 115.1 25.6 257 103-372 255-536 (553)
55 KOG1129 TPR repeat-containing 99.3 1.7E-10 3.7E-15 102.8 19.0 230 108-372 227-459 (478)
56 COG3071 HemY Uncharacterized e 99.3 7.1E-09 1.5E-13 95.5 30.0 275 55-336 97-389 (400)
57 COG2956 Predicted N-acetylgluc 99.3 1.8E-09 3.8E-14 96.4 25.1 287 86-379 48-355 (389)
58 COG3071 HemY Uncharacterized e 99.3 6.8E-09 1.5E-13 95.6 28.8 275 86-370 97-389 (400)
59 PF13041 PPR_2: PPR repeat fam 99.3 6.2E-12 1.4E-16 83.4 6.5 50 102-151 1-50 (50)
60 PF13041 PPR_2: PPR repeat fam 99.3 7.9E-12 1.7E-16 82.9 6.0 50 203-252 1-50 (50)
61 TIGR02521 type_IV_pilW type IV 99.3 1.9E-09 4E-14 98.0 23.4 192 104-300 31-227 (234)
62 PRK12370 invasion protein regu 99.2 1.4E-09 3.1E-14 111.7 23.4 241 87-338 275-536 (553)
63 KOG1915 Cell cycle control pro 99.2 4.7E-08 1E-12 91.7 30.5 358 10-372 106-537 (677)
64 KOG4162 Predicted calmodulin-b 99.2 3.1E-08 6.6E-13 98.4 30.1 363 7-372 319-784 (799)
65 KOG4318 Bicoid mRNA stability 99.2 1.2E-09 2.7E-14 109.3 19.9 336 3-364 17-401 (1088)
66 KOG1174 Anaphase-promoting com 99.2 4.8E-08 1E-12 90.2 26.8 351 13-371 99-500 (564)
67 PRK11189 lipoprotein NlpI; Pro 99.2 5.4E-09 1.2E-13 98.5 20.4 91 142-233 67-160 (296)
68 KOG1840 Kinesin light chain [C 99.1 1.2E-08 2.6E-13 100.5 22.8 239 74-336 200-478 (508)
69 PRK11189 lipoprotein NlpI; Pro 99.1 4.9E-08 1.1E-12 92.0 25.0 145 86-232 39-192 (296)
70 KOG1129 TPR repeat-containing 99.1 5.9E-09 1.3E-13 93.2 16.1 228 76-307 226-461 (478)
71 KOG2376 Signal recognition par 99.1 9.8E-07 2.1E-11 85.4 31.5 344 18-368 19-517 (652)
72 KOG0547 Translocase of outer m 99.0 4.6E-07 1E-11 85.6 27.2 219 113-338 335-567 (606)
73 PF12569 NARP1: NMDA receptor- 99.0 1.8E-07 4E-12 93.3 26.0 255 114-373 14-293 (517)
74 COG3063 PilF Tfp pilus assembl 99.0 2.8E-07 6E-12 79.0 21.9 196 142-341 38-240 (250)
75 KOG1174 Anaphase-promoting com 99.0 1E-06 2.2E-11 81.7 27.0 322 43-370 98-466 (564)
76 PF12569 NARP1: NMDA receptor- 99.0 7.9E-07 1.7E-11 88.8 27.5 126 242-370 196-333 (517)
77 KOG0624 dsRNA-activated protei 99.0 8.7E-07 1.9E-11 80.1 24.8 300 45-370 41-369 (504)
78 KOG1125 TPR repeat-containing 99.0 1.6E-08 3.6E-13 97.3 14.9 220 148-370 294-526 (579)
79 cd05804 StaR_like StaR_like; a 98.9 2.3E-06 4.9E-11 83.5 29.8 258 112-372 51-337 (355)
80 COG3063 PilF Tfp pilus assembl 98.9 5.7E-07 1.2E-11 77.1 21.6 192 106-302 37-233 (250)
81 KOG1156 N-terminal acetyltrans 98.9 2.6E-06 5.6E-11 83.5 28.8 349 20-373 50-470 (700)
82 KOG2047 mRNA splicing factor [ 98.9 7.2E-06 1.6E-10 80.3 31.0 346 12-365 103-534 (835)
83 PRK04841 transcriptional regul 98.9 7.1E-06 1.5E-10 90.6 34.8 356 17-372 347-761 (903)
84 PF04733 Coatomer_E: Coatomer 98.9 1.3E-07 2.8E-12 88.0 17.1 248 83-342 11-270 (290)
85 PF04733 Coatomer_E: Coatomer 98.9 7.5E-08 1.6E-12 89.5 15.1 243 113-370 10-264 (290)
86 KOG2047 mRNA splicing factor [ 98.9 1.1E-05 2.5E-10 78.9 29.8 356 12-371 249-687 (835)
87 KOG3785 Uncharacterized conser 98.8 1.3E-05 2.9E-10 73.0 28.2 353 17-374 63-493 (557)
88 cd05804 StaR_like StaR_like; a 98.8 7.1E-06 1.5E-10 80.0 28.6 56 281-336 269-335 (355)
89 PF12854 PPR_1: PPR repeat 98.8 7.2E-09 1.6E-13 61.8 3.9 34 5-38 1-34 (34)
90 KOG3616 Selective LIM binding 98.8 2.4E-06 5.3E-11 84.5 23.3 55 16-70 620-676 (1636)
91 KOG0548 Molecular co-chaperone 98.8 5.2E-06 1.1E-10 79.8 23.6 216 143-372 228-456 (539)
92 KOG4340 Uncharacterized conser 98.7 4.5E-06 9.7E-11 74.2 21.3 299 45-366 13-334 (459)
93 KOG4340 Uncharacterized conser 98.7 1.1E-05 2.3E-10 71.9 23.6 357 6-370 5-442 (459)
94 KOG1156 N-terminal acetyltrans 98.7 4.4E-05 9.5E-10 75.1 29.6 348 10-366 74-494 (700)
95 KOG0624 dsRNA-activated protei 98.7 4E-05 8.8E-10 69.6 26.5 322 16-372 43-395 (504)
96 KOG1070 rRNA processing protei 98.7 2.6E-06 5.7E-11 90.0 19.9 200 171-374 1455-1666(1710)
97 PRK10370 formate-dependent nit 98.6 2.5E-06 5.3E-11 75.0 17.1 119 253-373 52-175 (198)
98 TIGR03302 OM_YfiO outer membra 98.6 3.2E-06 6.8E-11 77.2 18.4 182 173-372 32-233 (235)
99 PLN02789 farnesyltranstransfer 98.6 1.5E-05 3.3E-10 75.2 22.8 229 106-369 39-300 (320)
100 PF12854 PPR_1: PPR repeat 98.6 6.9E-08 1.5E-12 57.5 4.5 33 169-201 2-34 (34)
101 KOG3616 Selective LIM binding 98.6 5.8E-05 1.3E-09 75.1 26.6 327 10-372 647-1025(1636)
102 KOG4162 Predicted calmodulin-b 98.6 6.1E-05 1.3E-09 75.6 27.0 92 281-372 655-750 (799)
103 KOG3785 Uncharacterized conser 98.6 3.6E-05 7.8E-10 70.2 22.8 343 18-368 29-454 (557)
104 KOG1125 TPR repeat-containing 98.5 6.5E-06 1.4E-10 79.8 18.1 243 112-361 293-561 (579)
105 PRK04841 transcriptional regul 98.5 0.00027 5.8E-09 78.2 33.8 321 50-370 349-719 (903)
106 KOG0985 Vesicle coat protein c 98.5 0.00031 6.6E-09 72.6 29.8 253 87-369 1089-1368(1666)
107 KOG3617 WD40 and TPR repeat-co 98.5 3.4E-05 7.3E-10 77.7 22.7 238 10-268 725-995 (1416)
108 PRK15359 type III secretion sy 98.5 4E-06 8.6E-11 69.7 14.0 121 226-352 14-136 (144)
109 PRK15359 type III secretion sy 98.5 3E-06 6.6E-11 70.4 13.0 107 261-372 14-122 (144)
110 KOG1128 Uncharacterized conser 98.5 9.2E-06 2E-10 80.8 18.2 190 169-373 393-584 (777)
111 KOG1128 Uncharacterized conser 98.5 5.4E-06 1.2E-10 82.4 16.0 222 49-284 405-631 (777)
112 KOG1070 rRNA processing protei 98.5 2.2E-05 4.7E-10 83.3 21.0 216 41-258 1457-1689(1710)
113 KOG2376 Signal recognition par 98.5 0.00027 5.9E-09 69.0 26.4 308 49-366 19-400 (652)
114 TIGR03302 OM_YfiO outer membra 98.4 1.8E-05 4E-10 72.1 17.9 181 137-339 31-234 (235)
115 PLN02789 farnesyltranstransfer 98.4 0.00014 3E-09 68.8 23.6 209 75-288 39-267 (320)
116 PRK15179 Vi polysaccharide bio 98.4 4.2E-05 9.2E-10 79.6 21.6 140 204-347 85-227 (694)
117 PRK10370 formate-dependent nit 98.4 3.4E-05 7.4E-10 67.8 17.9 153 181-345 23-181 (198)
118 KOG0548 Molecular co-chaperone 98.4 0.00069 1.5E-08 65.6 27.6 336 8-354 33-472 (539)
119 PRK15363 pathogenicity island 98.4 2.4E-05 5.1E-10 64.2 15.4 95 276-370 35-131 (157)
120 COG5010 TadD Flp pilus assembl 98.4 4.7E-05 1E-09 67.0 17.3 151 212-365 73-225 (257)
121 PRK14720 transcript cleavage f 98.4 8.5E-05 1.9E-09 78.2 22.3 233 72-353 30-268 (906)
122 KOG1127 TPR repeat-containing 98.3 8.6E-05 1.9E-09 76.5 20.9 349 12-367 493-909 (1238)
123 KOG2053 Mitochondrial inherita 98.3 0.0025 5.3E-08 65.6 30.6 351 22-376 54-507 (932)
124 COG5010 TadD Flp pilus assembl 98.3 0.00021 4.5E-09 63.1 19.0 152 77-230 70-227 (257)
125 KOG3081 Vesicle coat complex C 98.3 0.00093 2E-08 59.0 22.7 249 83-342 18-276 (299)
126 KOG0985 Vesicle coat protein c 98.3 0.0016 3.4E-08 67.6 27.5 298 40-368 982-1338(1666)
127 KOG3617 WD40 and TPR repeat-co 98.3 0.00027 5.9E-09 71.4 21.7 259 39-336 723-995 (1416)
128 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 5.3E-05 1.1E-09 73.0 16.2 122 243-369 172-295 (395)
129 TIGR00756 PPR pentatricopeptid 98.2 2.2E-06 4.8E-11 51.7 4.5 35 105-139 1-35 (35)
130 COG4783 Putative Zn-dependent 98.2 0.00047 1E-08 66.1 21.9 112 113-226 315-429 (484)
131 PRK14720 transcript cleavage f 98.2 0.0006 1.3E-08 72.0 24.5 168 39-234 28-198 (906)
132 COG4783 Putative Zn-dependent 98.2 0.00016 3.5E-09 69.2 18.4 126 241-369 308-435 (484)
133 TIGR00756 PPR pentatricopeptid 98.2 3.1E-06 6.7E-11 51.0 4.5 35 206-240 1-35 (35)
134 TIGR02552 LcrH_SycD type III s 98.2 3E-05 6.4E-10 63.8 11.8 96 276-371 17-114 (135)
135 PRK15179 Vi polysaccharide bio 98.2 0.0004 8.8E-09 72.4 22.1 143 170-316 82-230 (694)
136 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 8.3E-05 1.8E-09 71.7 15.8 117 82-200 178-294 (395)
137 KOG3060 Uncharacterized conser 98.1 0.0007 1.5E-08 59.3 19.2 168 176-346 54-229 (289)
138 KOG1127 TPR repeat-containing 98.1 0.00019 4.1E-09 74.1 18.0 322 43-370 493-878 (1238)
139 PF13812 PPR_3: Pentatricopept 98.1 5.3E-06 1.2E-10 49.6 4.4 33 105-137 2-34 (34)
140 KOG1914 mRNA cleavage and poly 98.1 0.013 2.8E-07 57.1 31.3 158 206-366 367-534 (656)
141 KOG1914 mRNA cleavage and poly 98.1 0.0087 1.9E-07 58.3 26.6 73 8-81 17-94 (656)
142 KOG3081 Vesicle coat complex C 98.0 0.0021 4.6E-08 56.9 20.2 248 9-268 8-270 (299)
143 TIGR02552 LcrH_SycD type III s 98.0 0.00021 4.4E-09 58.8 13.6 113 227-343 5-120 (135)
144 PF13812 PPR_3: Pentatricopept 98.0 1E-05 2.2E-10 48.4 4.0 33 206-238 2-34 (34)
145 PF04840 Vps16_C: Vps16, C-ter 98.0 0.01 2.2E-07 56.0 25.8 26 13-38 2-27 (319)
146 cd00189 TPR Tetratricopeptide 97.9 0.00014 3.1E-09 54.8 10.3 92 279-370 3-96 (100)
147 PF09976 TPR_21: Tetratricopep 97.9 0.00052 1.1E-08 57.1 14.0 114 253-367 24-143 (145)
148 KOG3060 Uncharacterized conser 97.9 0.0018 3.9E-08 56.9 17.0 162 208-373 55-222 (289)
149 PF09976 TPR_21: Tetratricopep 97.8 0.001 2.2E-08 55.3 15.1 112 117-229 24-142 (145)
150 PF12895 Apc3: Anaphase-promot 97.8 2.7E-05 5.8E-10 58.0 4.8 78 289-367 2-83 (84)
151 PF01535 PPR: PPR repeat; Int 97.8 2.2E-05 4.8E-10 45.7 3.4 31 105-135 1-31 (31)
152 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00028 6.2E-09 56.3 11.1 91 280-370 6-104 (119)
153 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00037 8.1E-09 55.6 11.6 104 242-345 4-113 (119)
154 PF01535 PPR: PPR repeat; Int 97.8 3.1E-05 6.7E-10 45.1 3.4 31 206-236 1-31 (31)
155 PF13414 TPR_11: TPR repeat; P 97.7 0.00012 2.5E-09 52.1 6.5 64 307-370 2-66 (69)
156 PRK02603 photosystem I assembl 97.6 0.0007 1.5E-08 58.2 11.4 82 276-357 35-121 (172)
157 PF13432 TPR_16: Tetratricopep 97.6 0.00018 3.9E-09 50.4 6.3 58 314-371 3-60 (65)
158 PLN03088 SGT1, suppressor of 97.6 0.00037 8.1E-09 67.4 10.5 105 246-352 8-114 (356)
159 cd00189 TPR Tetratricopeptide 97.6 0.00088 1.9E-08 50.3 10.8 92 107-200 3-94 (100)
160 KOG2053 Mitochondrial inherita 97.6 0.057 1.2E-06 56.0 25.5 183 115-302 54-252 (932)
161 KOG2041 WD40 repeat protein [G 97.6 0.11 2.3E-06 52.5 26.2 284 56-365 748-1080(1189)
162 PLN03088 SGT1, suppressor of 97.6 0.0015 3.3E-08 63.2 13.3 103 211-317 8-112 (356)
163 COG3898 Uncharacterized membra 97.5 0.082 1.8E-06 49.7 24.1 280 75-370 84-391 (531)
164 CHL00033 ycf3 photosystem I as 97.5 0.0011 2.4E-08 56.7 10.9 94 275-368 34-139 (168)
165 PF12688 TPR_5: Tetratrico pep 97.5 0.003 6.6E-08 50.0 12.2 107 109-215 6-116 (120)
166 PRK02603 photosystem I assembl 97.5 0.0034 7.4E-08 54.0 13.6 130 103-254 34-165 (172)
167 PRK10153 DNA-binding transcrip 97.5 0.0043 9.3E-08 62.8 16.2 65 307-372 419-483 (517)
168 PRK15363 pathogenicity island 97.5 0.0034 7.3E-08 51.7 12.4 94 104-199 35-128 (157)
169 KOG0550 Molecular chaperone (D 97.5 0.0041 8.8E-08 58.5 14.2 152 214-371 178-350 (486)
170 PRK15331 chaperone protein Sic 97.5 0.0013 2.7E-08 54.4 9.8 90 281-370 42-133 (165)
171 PF14559 TPR_19: Tetratricopep 97.4 0.00021 4.6E-09 50.6 4.5 52 319-370 2-53 (68)
172 CHL00033 ycf3 photosystem I as 97.4 0.0054 1.2E-07 52.5 13.9 93 104-197 35-136 (168)
173 COG4235 Cytochrome c biogenesi 97.4 0.0031 6.8E-08 57.2 12.4 102 273-374 153-259 (287)
174 PF08579 RPM2: Mitochondrial r 97.4 0.0034 7.3E-08 48.0 10.6 81 106-186 27-116 (120)
175 PF14938 SNAP: Soluble NSF att 97.4 0.014 3.1E-07 54.6 17.3 24 107-130 38-61 (282)
176 KOG0553 TPR repeat-containing 97.4 0.00061 1.3E-08 61.4 7.5 98 249-349 90-190 (304)
177 PF05843 Suf: Suppressor of fo 97.4 0.0054 1.2E-07 57.2 14.2 132 207-341 3-140 (280)
178 PF05843 Suf: Suppressor of fo 97.4 0.004 8.6E-08 58.1 13.3 126 106-233 3-135 (280)
179 KOG0553 TPR repeat-containing 97.4 0.0022 4.7E-08 57.9 10.8 99 213-315 89-189 (304)
180 PF12895 Apc3: Anaphase-promot 97.4 0.00055 1.2E-08 50.8 6.1 80 218-301 2-83 (84)
181 PF13432 TPR_16: Tetratricopep 97.4 0.00084 1.8E-08 47.0 6.8 61 282-342 3-65 (65)
182 KOG1130 Predicted G-alpha GTPa 97.4 0.0015 3.2E-08 61.2 9.9 128 242-369 197-342 (639)
183 COG4700 Uncharacterized protei 97.3 0.038 8.3E-07 46.4 16.8 133 236-370 85-221 (251)
184 PF14938 SNAP: Soluble NSF att 97.3 0.019 4.1E-07 53.8 17.4 170 144-340 40-228 (282)
185 PRK10153 DNA-binding transcrip 97.3 0.011 2.4E-07 59.9 16.5 139 203-343 335-488 (517)
186 PF13371 TPR_9: Tetratricopept 97.3 0.00087 1.9E-08 48.2 6.3 57 316-372 3-59 (73)
187 PF07079 DUF1347: Protein of u 97.3 0.2 4.3E-06 48.2 25.6 110 256-369 396-522 (549)
188 PF08579 RPM2: Mitochondrial r 97.3 0.0034 7.3E-08 48.0 9.0 78 210-288 30-116 (120)
189 PF04840 Vps16_C: Vps16, C-ter 97.2 0.21 4.5E-06 47.3 26.2 111 241-368 178-288 (319)
190 PF06239 ECSIT: Evolutionarily 97.2 0.0026 5.5E-08 54.9 8.9 96 195-291 35-153 (228)
191 KOG2796 Uncharacterized conser 97.2 0.054 1.2E-06 48.1 17.0 193 42-234 69-315 (366)
192 PF10037 MRP-S27: Mitochondria 97.2 0.0063 1.4E-07 59.2 12.6 96 106-201 68-165 (429)
193 KOG1538 Uncharacterized conser 97.2 0.074 1.6E-06 53.1 19.6 125 180-336 709-845 (1081)
194 KOG2280 Vacuolar assembly/sort 97.2 0.36 7.9E-06 49.4 26.7 318 17-366 443-794 (829)
195 PF10037 MRP-S27: Mitochondria 97.2 0.0062 1.3E-07 59.3 12.4 117 135-251 62-184 (429)
196 COG4700 Uncharacterized protei 97.2 0.094 2E-06 44.1 17.2 100 135-234 85-189 (251)
197 PRK10866 outer membrane biogen 97.1 0.058 1.3E-06 49.0 17.5 56 314-369 181-239 (243)
198 PRK10866 outer membrane biogen 97.1 0.21 4.6E-06 45.4 20.7 65 103-169 31-99 (243)
199 PF13281 DUF4071: Domain of un 97.1 0.038 8.3E-07 52.8 16.1 159 179-340 146-337 (374)
200 PF14559 TPR_19: Tetratricopep 97.0 0.0012 2.5E-08 46.7 4.5 60 252-313 3-63 (68)
201 PF13414 TPR_11: TPR repeat; P 97.0 0.0023 5E-08 45.3 6.0 65 275-339 2-69 (69)
202 PF13431 TPR_17: Tetratricopep 97.0 0.00055 1.2E-08 40.6 2.2 33 331-363 2-34 (34)
203 PF06239 ECSIT: Evolutionarily 97.0 0.0085 1.8E-07 51.8 10.0 97 93-189 34-153 (228)
204 PF12688 TPR_5: Tetratrico pep 97.0 0.014 2.9E-07 46.3 10.5 83 284-366 9-99 (120)
205 PRK10803 tol-pal system protei 96.9 0.0083 1.8E-07 55.0 10.1 93 278-370 145-245 (263)
206 COG3898 Uncharacterized membra 96.8 0.45 9.8E-06 45.0 26.2 249 106-363 84-350 (531)
207 KOG0550 Molecular chaperone (D 96.7 0.61 1.3E-05 44.5 20.5 150 149-302 179-347 (486)
208 KOG2041 WD40 repeat protein [G 96.7 0.32 7E-06 49.3 19.5 252 88-371 678-952 (1189)
209 PF13525 YfiO: Outer membrane 96.7 0.32 7E-06 42.9 18.2 62 107-168 8-71 (203)
210 PF13428 TPR_14: Tetratricopep 96.6 0.0035 7.6E-08 39.8 4.0 42 309-350 2-43 (44)
211 KOG2796 Uncharacterized conser 96.6 0.14 3E-06 45.6 14.9 132 209-340 181-318 (366)
212 PLN03098 LPA1 LOW PSII ACCUMUL 96.6 0.0096 2.1E-07 57.6 8.6 62 276-337 75-141 (453)
213 PF13371 TPR_9: Tetratricopept 96.6 0.0084 1.8E-07 42.9 6.4 62 284-345 3-66 (73)
214 KOG2280 Vacuolar assembly/sort 96.5 1.3 2.9E-05 45.5 23.6 301 46-368 441-770 (829)
215 PRK10803 tol-pal system protei 96.4 0.05 1.1E-06 50.0 11.8 102 241-342 144-251 (263)
216 COG4235 Cytochrome c biogenesi 96.4 0.088 1.9E-06 48.1 12.9 96 138-234 155-256 (287)
217 PF04053 Coatomer_WDAD: Coatom 96.4 0.24 5.2E-06 49.2 16.8 153 22-199 272-427 (443)
218 PF09205 DUF1955: Domain of un 96.3 0.42 9.1E-06 37.9 14.0 140 216-374 13-152 (161)
219 PF13424 TPR_12: Tetratricopep 96.2 0.009 1.9E-07 43.5 4.8 60 310-369 7-73 (78)
220 PF03704 BTAD: Bacterial trans 96.2 0.024 5.3E-07 47.1 7.9 61 310-370 64-124 (146)
221 PF13525 YfiO: Outer membrane 96.2 0.41 8.8E-06 42.3 16.0 49 314-362 147-198 (203)
222 KOG1585 Protein required for f 96.2 0.84 1.8E-05 40.4 17.5 85 280-365 154-250 (308)
223 COG5107 RNA14 Pre-mRNA 3'-end 96.1 1.5 3.3E-05 42.4 25.0 62 8-69 39-103 (660)
224 PF12921 ATP13: Mitochondrial 96.1 0.074 1.6E-06 42.6 9.6 78 240-317 2-97 (126)
225 PF13424 TPR_12: Tetratricopep 96.0 0.014 3E-07 42.4 4.8 60 277-336 6-74 (78)
226 KOG1538 Uncharacterized conser 95.8 0.6 1.3E-05 47.0 16.3 113 250-373 726-848 (1081)
227 COG0457 NrfG FOG: TPR repeat [ 95.8 1.3 2.8E-05 39.1 26.7 121 249-370 139-264 (291)
228 KOG1920 IkappaB kinase complex 95.7 1.8 3.8E-05 47.1 20.3 125 188-333 894-1024(1265)
229 PF12921 ATP13: Mitochondrial 95.7 0.12 2.6E-06 41.4 9.3 100 173-288 1-100 (126)
230 COG1729 Uncharacterized protei 95.6 0.11 2.3E-06 46.9 9.6 91 278-371 144-244 (262)
231 PF03704 BTAD: Bacterial trans 95.6 0.1 2.2E-06 43.3 8.9 70 106-176 64-138 (146)
232 KOG0543 FKBP-type peptidyl-pro 95.5 0.14 3.1E-06 48.6 10.4 87 284-370 216-319 (397)
233 COG0457 NrfG FOG: TPR repeat [ 95.5 1.6 3.6E-05 38.4 26.4 221 118-340 37-268 (291)
234 KOG1941 Acetylcholine receptor 95.4 0.48 1E-05 44.3 13.2 47 114-160 16-64 (518)
235 KOG1130 Predicted G-alpha GTPa 95.4 0.54 1.2E-05 44.8 13.6 131 206-336 196-343 (639)
236 PLN03098 LPA1 LOW PSII ACCUMUL 95.3 0.13 2.8E-06 50.0 9.8 61 239-302 74-138 (453)
237 KOG1258 mRNA processing protei 95.3 3.8 8.2E-05 41.3 24.1 332 23-357 91-490 (577)
238 COG3118 Thioredoxin domain-con 95.3 1.1 2.4E-05 41.0 14.7 130 239-372 134-266 (304)
239 PF13512 TPR_18: Tetratricopep 95.2 0.56 1.2E-05 38.1 11.6 60 284-343 18-82 (142)
240 KOG3941 Intermediate in Toll s 95.2 0.13 2.7E-06 46.3 8.5 100 193-293 53-175 (406)
241 smart00299 CLH Clathrin heavy 95.2 1.2 2.7E-05 36.4 14.3 44 143-187 11-54 (140)
242 KOG1920 IkappaB kinase complex 95.2 0.58 1.3E-05 50.5 14.6 159 86-303 893-1053(1265)
243 PRK15331 chaperone protein Sic 95.2 0.27 5.8E-06 40.9 9.9 85 114-200 47-131 (165)
244 KOG0543 FKBP-type peptidyl-pro 95.1 0.31 6.7E-06 46.4 11.2 120 80-201 215-353 (397)
245 PF10300 DUF3808: Protein of u 95.1 1 2.2E-05 45.5 15.8 159 209-370 192-375 (468)
246 PRK11906 transcriptional regul 95.0 0.54 1.2E-05 45.9 12.9 115 256-370 274-400 (458)
247 PF04053 Coatomer_WDAD: Coatom 94.9 1.9 4.1E-05 43.0 16.9 131 13-164 297-427 (443)
248 PF08631 SPO22: Meiosis protei 94.9 3.3 7.2E-05 38.6 21.8 99 141-240 86-192 (278)
249 PF13281 DUF4071: Domain of un 94.9 2.7 5.8E-05 40.5 17.0 72 78-149 146-227 (374)
250 smart00299 CLH Clathrin heavy 94.8 1.8 4E-05 35.4 15.0 42 109-151 12-53 (140)
251 KOG4555 TPR repeat-containing 94.8 0.32 7E-06 38.4 8.7 89 285-373 52-146 (175)
252 COG3118 Thioredoxin domain-con 94.8 2.8 6E-05 38.5 15.9 144 214-360 143-290 (304)
253 KOG3941 Intermediate in Toll s 94.8 0.3 6.5E-06 44.0 9.6 99 92-190 53-174 (406)
254 KOG2066 Vacuolar assembly/sort 94.7 6.5 0.00014 41.0 24.5 74 18-91 363-441 (846)
255 KOG2610 Uncharacterized conser 94.6 0.86 1.9E-05 42.3 12.2 112 187-302 116-235 (491)
256 PF13512 TPR_18: Tetratricopep 94.3 1.3 2.9E-05 36.0 11.7 18 324-341 115-132 (142)
257 PF07079 DUF1347: Protein of u 94.2 6 0.00013 38.6 23.7 45 10-54 127-179 (549)
258 COG1729 Uncharacterized protei 94.2 0.6 1.3E-05 42.2 10.4 86 217-302 153-241 (262)
259 PF10300 DUF3808: Protein of u 94.1 3.7 7.9E-05 41.5 17.2 173 124-302 177-373 (468)
260 KOG0890 Protein kinase of the 94.1 16 0.00035 43.3 25.1 309 47-373 1388-1733(2382)
261 KOG2610 Uncharacterized conser 94.1 0.59 1.3E-05 43.3 10.1 158 216-376 114-281 (491)
262 PF04184 ST7: ST7 protein; In 94.0 1.3 2.9E-05 43.5 13.0 150 212-373 175-326 (539)
263 PF04184 ST7: ST7 protein; In 93.9 7.4 0.00016 38.6 17.5 98 245-342 264-380 (539)
264 PRK09687 putative lyase; Provi 93.7 6 0.00013 36.8 26.1 25 314-339 241-265 (280)
265 PF00515 TPR_1: Tetratricopept 93.6 0.14 3E-06 30.0 3.8 32 309-340 2-33 (34)
266 PF13170 DUF4003: Protein of u 93.5 3.7 8.1E-05 38.5 14.9 134 121-284 79-225 (297)
267 PRK11906 transcriptional regul 93.5 3.7 8.1E-05 40.3 15.0 158 206-366 252-431 (458)
268 PF02259 FAT: FAT domain; Int 93.4 7.8 0.00017 37.4 19.9 35 321-355 271-305 (352)
269 PF07719 TPR_2: Tetratricopept 93.4 0.22 4.9E-06 29.0 4.5 32 310-341 3-34 (34)
270 COG4785 NlpI Lipoprotein NlpI, 93.3 3.8 8.3E-05 35.8 13.1 160 206-372 100-267 (297)
271 COG5107 RNA14 Pre-mRNA 3'-end 93.3 8.6 0.00019 37.5 28.0 128 241-370 398-530 (660)
272 PF02259 FAT: FAT domain; Int 92.9 8.7 0.00019 37.1 17.5 65 307-371 145-213 (352)
273 KOG1585 Protein required for f 92.9 5.4 0.00012 35.5 13.6 80 44-130 33-117 (308)
274 PRK11619 lytic murein transgly 92.9 14 0.00031 38.9 32.6 97 57-155 81-179 (644)
275 KOG4555 TPR repeat-containing 92.8 2.7 5.9E-05 33.4 10.6 53 215-268 53-105 (175)
276 KOG1941 Acetylcholine receptor 92.6 3.5 7.6E-05 38.9 12.8 163 105-267 84-273 (518)
277 PRK09687 putative lyase; Provi 92.5 9 0.00019 35.7 25.7 239 32-287 27-278 (280)
278 COG4649 Uncharacterized protei 92.4 3.3 7.2E-05 34.8 11.1 119 84-202 69-195 (221)
279 COG3629 DnrI DNA-binding trans 92.1 0.85 1.8E-05 41.9 8.3 61 310-370 155-215 (280)
280 PF13428 TPR_14: Tetratricopep 91.8 0.58 1.2E-05 29.4 5.0 28 106-133 3-30 (44)
281 KOG0276 Vesicle coat complex C 91.7 3 6.4E-05 42.0 11.8 149 24-200 599-747 (794)
282 PF13176 TPR_7: Tetratricopept 91.6 0.37 7.9E-06 28.8 3.7 26 344-369 1-26 (36)
283 PF13176 TPR_7: Tetratricopept 91.5 0.47 1E-05 28.3 4.2 25 106-130 1-25 (36)
284 PF09205 DUF1955: Domain of un 91.5 6.2 0.00013 31.6 13.1 57 211-268 92-148 (161)
285 COG3629 DnrI DNA-binding trans 91.2 1.4 3E-05 40.5 8.7 70 76-145 156-233 (280)
286 PF07035 Mic1: Colon cancer-as 91.1 8.5 0.00018 32.5 15.8 56 278-334 91-146 (167)
287 TIGR02508 type_III_yscG type I 91.0 3.7 7.9E-05 30.9 8.9 60 80-142 46-105 (115)
288 KOG4234 TPR repeat-containing 90.7 1 2.2E-05 38.7 6.6 89 284-372 103-198 (271)
289 KOG1586 Protein required for f 90.6 12 0.00025 33.3 13.5 63 279-341 116-187 (288)
290 PF07035 Mic1: Colon cancer-as 90.5 7.6 0.00017 32.7 11.7 124 37-168 24-149 (167)
291 COG4105 ComL DNA uptake lipopr 90.4 13 0.00029 33.5 19.0 56 315-370 174-232 (254)
292 PF09613 HrpB1_HrpK: Bacterial 90.3 9.6 0.00021 31.8 13.1 110 249-363 19-130 (160)
293 PF10602 RPN7: 26S proteasome 90.3 6.4 0.00014 33.8 11.6 15 288-302 125-139 (177)
294 PF10602 RPN7: 26S proteasome 90.2 4.7 0.0001 34.6 10.7 63 105-167 37-101 (177)
295 PF09613 HrpB1_HrpK: Bacterial 89.7 1.7 3.6E-05 36.1 7.1 52 319-370 21-72 (160)
296 PF13181 TPR_8: Tetratricopept 89.2 0.74 1.6E-05 26.7 3.7 30 310-339 3-32 (34)
297 TIGR02561 HrpB1_HrpK type III 89.0 1.7 3.7E-05 35.5 6.5 53 320-372 22-74 (153)
298 KOG1258 mRNA processing protei 88.8 30 0.00064 35.2 23.4 299 72-371 44-395 (577)
299 KOG1464 COP9 signalosome, subu 88.6 19 0.0004 32.7 17.8 243 87-336 41-331 (440)
300 PF13431 TPR_17: Tetratricopep 88.6 0.8 1.7E-05 26.9 3.4 31 163-194 3-33 (34)
301 KOG2114 Vacuolar assembly/sort 88.0 40 0.00087 35.9 20.7 177 75-266 336-516 (933)
302 KOG2114 Vacuolar assembly/sort 87.6 42 0.00092 35.7 22.6 75 282-357 711-786 (933)
303 PF02284 COX5A: Cytochrome c o 86.9 4.6 0.0001 30.5 7.1 60 223-284 28-87 (108)
304 PF00515 TPR_1: Tetratricopept 86.7 1.7 3.6E-05 25.2 4.1 27 106-132 3-29 (34)
305 cd00923 Cyt_c_Oxidase_Va Cytoc 86.4 4.9 0.00011 30.1 6.9 62 221-284 23-84 (103)
306 KOG0276 Vesicle coat complex C 86.2 17 0.00037 37.0 12.6 150 85-266 598-747 (794)
307 PF11207 DUF2989: Protein of u 85.9 8.3 0.00018 33.5 9.3 78 115-194 118-198 (203)
308 PF07721 TPR_4: Tetratricopept 85.8 1.2 2.5E-05 24.3 2.8 24 343-366 2-25 (26)
309 COG4649 Uncharacterized protei 85.8 21 0.00045 30.2 14.1 118 151-268 70-195 (221)
310 PF00637 Clathrin: Region in C 85.4 0.76 1.6E-05 37.8 2.9 84 211-302 13-96 (143)
311 TIGR02508 type_III_yscG type I 85.4 9.3 0.0002 28.9 7.9 86 155-244 21-106 (115)
312 PF08631 SPO22: Meiosis protei 85.3 32 0.00069 32.0 24.1 16 351-366 255-270 (278)
313 KOG4648 Uncharacterized conser 85.2 2.9 6.3E-05 39.0 6.5 89 250-341 107-198 (536)
314 PF13374 TPR_10: Tetratricopep 85.0 2.1 4.5E-05 26.1 4.1 24 312-335 6-29 (42)
315 PF07719 TPR_2: Tetratricopept 84.8 1.7 3.8E-05 25.0 3.5 28 343-370 2-29 (34)
316 PRK12798 chemotaxis protein; R 84.8 41 0.00089 32.8 19.9 180 187-369 125-322 (421)
317 PF00637 Clathrin: Region in C 84.6 0.48 1E-05 39.0 1.3 83 145-230 13-95 (143)
318 COG2909 MalT ATP-dependent tra 84.4 63 0.0014 34.7 20.0 193 185-381 426-657 (894)
319 PF13374 TPR_10: Tetratricopep 83.7 2.8 6.2E-05 25.4 4.4 27 105-131 3-29 (42)
320 KOG4648 Uncharacterized conser 83.2 2.7 5.9E-05 39.2 5.5 86 283-368 104-191 (536)
321 KOG2396 HAT (Half-A-TPR) repea 83.2 52 0.0011 32.9 19.0 103 236-341 455-564 (568)
322 KOG4570 Uncharacterized conser 83.1 7.7 0.00017 36.0 8.2 100 168-268 58-163 (418)
323 PRK15180 Vi polysaccharide bio 83.1 11 0.00024 37.1 9.6 125 252-379 301-428 (831)
324 TIGR02561 HrpB1_HrpK type III 82.7 12 0.00026 30.7 8.4 66 251-319 21-88 (153)
325 COG4785 NlpI Lipoprotein NlpI, 82.6 34 0.00073 30.2 13.9 176 86-268 78-265 (297)
326 PF13174 TPR_6: Tetratricopept 81.7 2.8 6.2E-05 23.8 3.6 24 316-339 8-31 (33)
327 PF06552 TOM20_plant: Plant sp 81.5 20 0.00043 30.5 9.5 29 223-253 53-82 (186)
328 PF14853 Fis1_TPR_C: Fis1 C-te 81.1 11 0.00025 24.7 6.4 50 345-420 4-53 (53)
329 COG2976 Uncharacterized protei 80.9 36 0.00079 29.4 12.9 88 248-340 97-191 (207)
330 PF02284 COX5A: Cytochrome c o 80.8 11 0.00024 28.6 6.9 50 300-349 37-86 (108)
331 COG3947 Response regulator con 80.3 6.8 0.00015 35.9 6.8 57 314-370 285-341 (361)
332 PF13181 TPR_8: Tetratricopept 80.2 3.9 8.5E-05 23.5 3.8 28 343-370 2-29 (34)
333 cd00923 Cyt_c_Oxidase_Va Cytoc 80.1 18 0.00038 27.2 7.7 62 120-182 23-84 (103)
334 PF07721 TPR_4: Tetratricopept 79.9 3.7 8E-05 22.2 3.3 21 280-300 5-25 (26)
335 KOG1550 Extracellular protein 79.8 81 0.0018 32.8 22.7 270 89-370 228-537 (552)
336 KOG4234 TPR repeat-containing 79.5 17 0.00037 31.5 8.5 88 112-201 103-195 (271)
337 PF13174 TPR_6: Tetratricopept 79.4 2.8 6E-05 23.9 3.0 28 344-371 2-29 (33)
338 PRK13800 putative oxidoreducta 79.1 1.1E+02 0.0024 34.0 27.2 254 63-335 625-879 (897)
339 PF04097 Nic96: Nup93/Nic96; 78.8 92 0.002 32.9 20.6 163 206-369 325-532 (613)
340 COG1747 Uncharacterized N-term 78.5 78 0.0017 31.9 20.6 159 103-268 65-233 (711)
341 PF11207 DUF2989: Protein of u 77.8 35 0.00075 29.8 10.1 74 222-296 123-198 (203)
342 COG4105 ComL DNA uptake lipopr 77.5 56 0.0012 29.7 22.1 60 109-168 39-100 (254)
343 COG4455 ImpE Protein of avirul 77.3 8.9 0.00019 33.6 6.4 63 279-341 4-68 (273)
344 KOG3364 Membrane protein invol 77.0 16 0.00034 29.5 7.2 49 322-370 49-99 (149)
345 smart00028 TPR Tetratricopepti 76.6 4.5 9.7E-05 22.0 3.4 21 346-366 5-25 (34)
346 KOG4570 Uncharacterized conser 76.3 12 0.00027 34.7 7.3 94 72-169 63-165 (418)
347 PF07163 Pex26: Pex26 protein; 76.3 32 0.00068 31.6 9.7 87 212-301 90-183 (309)
348 PF13170 DUF4003: Protein of u 75.9 71 0.0015 30.1 15.0 62 222-283 79-148 (297)
349 KOG2066 Vacuolar assembly/sort 75.9 1.1E+02 0.0025 32.4 25.6 151 49-205 363-536 (846)
350 PF09477 Type_III_YscG: Bacter 75.7 27 0.00059 26.8 7.8 79 154-235 21-99 (116)
351 PRK10941 hypothetical protein; 75.6 16 0.00034 33.7 8.1 60 311-370 184-243 (269)
352 PRK15180 Vi polysaccharide bio 75.2 15 0.00033 36.1 8.0 126 212-341 296-424 (831)
353 COG2976 Uncharacterized protei 74.8 56 0.0012 28.3 13.7 52 183-234 135-188 (207)
354 KOG0890 Protein kinase of the 74.6 2.1E+02 0.0046 34.8 23.9 144 16-163 1388-1542(2382)
355 PF14853 Fis1_TPR_C: Fis1 C-te 73.5 6.6 0.00014 25.9 3.7 32 313-344 6-37 (53)
356 PF09477 Type_III_YscG: Bacter 72.5 42 0.00091 25.8 8.6 53 80-134 47-99 (116)
357 TIGR03504 FimV_Cterm FimV C-te 71.2 7.4 0.00016 24.4 3.3 27 346-372 3-29 (44)
358 COG1747 Uncharacterized N-term 70.6 1.2E+02 0.0027 30.5 21.8 172 171-349 63-246 (711)
359 KOG0545 Aryl-hydrocarbon recep 70.2 33 0.00071 30.8 8.2 88 283-370 185-292 (329)
360 PF10579 Rapsyn_N: Rapsyn N-te 68.7 15 0.00033 26.4 4.8 47 252-298 18-65 (80)
361 TIGR03504 FimV_Cterm FimV C-te 68.5 14 0.0003 23.2 4.2 22 110-131 5-26 (44)
362 PF14561 TPR_20: Tetratricopep 68.5 14 0.00031 27.5 5.1 45 328-372 8-52 (90)
363 PRK11619 lytic murein transgly 68.0 1.7E+02 0.0037 31.1 33.5 223 153-376 255-510 (644)
364 KOG4642 Chaperone-dependent E3 66.8 19 0.00041 32.2 6.0 54 315-368 51-104 (284)
365 PF07163 Pex26: Pex26 protein; 66.6 82 0.0018 29.1 10.1 86 110-197 89-181 (309)
366 smart00386 HAT HAT (Half-A-TPR 65.9 12 0.00027 20.8 3.5 29 322-350 1-29 (33)
367 KOG1308 Hsp70-interacting prot 65.8 4.4 9.5E-05 38.0 2.2 87 289-375 127-215 (377)
368 PF10345 Cohesin_load: Cohesin 65.7 1.8E+02 0.004 30.6 23.3 152 39-200 27-205 (608)
369 KOG4279 Serine/threonine prote 65.1 1.7E+02 0.0038 31.0 13.1 181 158-341 182-399 (1226)
370 PF04097 Nic96: Nup93/Nic96; 64.9 1.9E+02 0.0042 30.5 15.0 86 212-302 265-353 (613)
371 KOG4077 Cytochrome c oxidase, 64.4 41 0.0009 26.7 6.8 71 223-304 67-137 (149)
372 PF04190 DUF410: Protein of un 64.2 1.2E+02 0.0026 27.9 15.4 159 186-371 2-170 (260)
373 PF06552 TOM20_plant: Plant sp 63.9 94 0.002 26.6 10.9 77 158-268 54-135 (186)
374 PF04910 Tcf25: Transcriptiona 63.2 1.5E+02 0.0033 28.8 13.7 64 307-370 99-167 (360)
375 PF08311 Mad3_BUB1_I: Mad3/BUB 63.1 63 0.0014 25.8 8.2 42 326-367 81-124 (126)
376 PRK13800 putative oxidoreducta 63.0 2.5E+02 0.0055 31.3 27.6 259 32-310 625-886 (897)
377 cd08819 CARD_MDA5_2 Caspase ac 62.5 26 0.00056 25.8 5.1 37 86-123 49-85 (88)
378 KOG1550 Extracellular protein 62.4 2E+02 0.0044 29.9 15.7 150 217-374 261-429 (552)
379 PF10366 Vps39_1: Vacuolar sor 61.3 48 0.001 25.7 7.0 27 207-233 41-67 (108)
380 KOG4507 Uncharacterized conser 61.3 32 0.00068 35.0 7.1 51 318-368 652-702 (886)
381 PF14669 Asp_Glu_race_2: Putat 61.2 1.1E+02 0.0024 26.5 12.9 95 197-302 99-207 (233)
382 PF10579 Rapsyn_N: Rapsyn N-te 61.0 20 0.00044 25.8 4.3 46 320-365 18-66 (80)
383 COG3947 Response regulator con 60.6 33 0.00071 31.7 6.5 58 176-233 281-341 (361)
384 PF11846 DUF3366: Domain of un 60.0 36 0.00078 29.6 6.9 35 305-339 141-175 (193)
385 PF13934 ELYS: Nuclear pore co 59.5 1.3E+02 0.0029 26.9 12.9 70 246-319 114-183 (226)
386 PF11838 ERAP1_C: ERAP1-like C 59.4 1.6E+02 0.0035 27.8 16.3 82 256-337 146-230 (324)
387 KOG2062 26S proteasome regulat 58.7 1.5E+02 0.0032 31.5 11.4 118 215-336 511-634 (929)
388 PRK13342 recombination factor 58.5 2E+02 0.0043 28.6 14.9 43 208-250 230-275 (413)
389 PF11768 DUF3312: Protein of u 58.2 91 0.002 31.7 9.8 23 179-201 413-435 (545)
390 PF10345 Cohesin_load: Cohesin 57.9 2.5E+02 0.0055 29.6 27.1 159 41-200 58-251 (608)
391 KOG4507 Uncharacterized conser 57.3 46 0.00099 33.9 7.5 98 253-353 620-721 (886)
392 PF13762 MNE1: Mitochondrial s 57.1 1E+02 0.0022 25.4 8.3 78 76-153 42-129 (145)
393 PF14863 Alkyl_sulf_dimr: Alky 55.9 60 0.0013 26.6 6.9 63 292-357 57-119 (141)
394 KOG4642 Chaperone-dependent E3 55.8 1.5E+02 0.0033 26.7 9.6 81 184-266 20-104 (284)
395 PF08311 Mad3_BUB1_I: Mad3/BUB 55.7 1.1E+02 0.0023 24.6 8.5 58 140-199 66-124 (126)
396 cd08819 CARD_MDA5_2 Caspase ac 55.6 82 0.0018 23.3 7.0 38 186-224 48-85 (88)
397 TIGR02270 conserved hypothetic 55.4 2.2E+02 0.0048 28.2 23.9 236 48-305 44-281 (410)
398 PF10366 Vps39_1: Vacuolar sor 55.2 97 0.0021 24.0 8.4 27 106-132 41-67 (108)
399 KOG4077 Cytochrome c oxidase, 54.9 95 0.0021 24.8 7.3 57 124-181 69-125 (149)
400 PF13762 MNE1: Mitochondrial s 54.9 1.2E+02 0.0026 25.0 10.1 49 204-252 78-127 (145)
401 PRK10941 hypothetical protein; 54.9 65 0.0014 29.8 7.8 66 279-344 184-251 (269)
402 PF09986 DUF2225: Uncharacteri 54.4 83 0.0018 28.0 8.2 58 315-372 125-195 (214)
403 PF11846 DUF3366: Domain of un 53.9 52 0.0011 28.5 6.9 51 252-302 120-170 (193)
404 KOG0376 Serine-threonine phosp 53.2 11 0.00024 37.1 2.6 95 246-343 10-107 (476)
405 PF14669 Asp_Glu_race_2: Putat 53.1 1.5E+02 0.0033 25.7 12.9 57 143-199 136-206 (233)
406 PRK10564 maltose regulon perip 52.4 29 0.00062 32.3 5.0 38 106-143 259-296 (303)
407 KOG0292 Vesicle coat complex C 52.3 19 0.00041 38.4 4.2 46 288-336 655-700 (1202)
408 cd08326 CARD_CASP9 Caspase act 51.4 38 0.00082 24.9 4.6 53 71-123 28-80 (84)
409 PF04910 Tcf25: Transcriptiona 51.3 2.4E+02 0.0052 27.4 19.0 98 247-350 110-232 (360)
410 PF11663 Toxin_YhaV: Toxin wit 49.4 19 0.0004 29.0 2.9 33 115-149 106-138 (140)
411 COG4455 ImpE Protein of avirul 49.3 1.9E+02 0.0042 25.7 11.8 75 208-284 4-80 (273)
412 PF09670 Cas_Cas02710: CRISPR- 48.8 2.7E+02 0.0059 27.3 12.0 53 215-268 141-197 (379)
413 COG2909 MalT ATP-dependent tra 48.6 4E+02 0.0086 29.1 23.2 215 150-367 426-684 (894)
414 KOG2297 Predicted translation 48.3 1.6E+02 0.0034 27.6 8.8 18 237-254 220-237 (412)
415 PF10255 Paf67: RNA polymerase 47.6 1.3E+02 0.0028 29.7 8.9 83 48-130 81-190 (404)
416 KOG2396 HAT (Half-A-TPR) repea 46.4 3.3E+02 0.0072 27.6 27.0 64 7-70 101-168 (568)
417 KOG1586 Protein required for f 46.4 2.2E+02 0.0049 25.6 18.6 89 254-342 128-229 (288)
418 PF12862 Apc5: Anaphase-promot 45.4 1.3E+02 0.0027 22.5 7.0 21 316-336 49-69 (94)
419 PF12862 Apc5: Anaphase-promot 45.0 71 0.0015 23.9 5.5 53 318-370 8-69 (94)
420 KOG2422 Uncharacterized conser 44.9 3.7E+02 0.0081 27.8 12.3 123 250-372 248-408 (665)
421 PF04190 DUF410: Protein of un 44.9 2.5E+02 0.0055 25.8 18.9 158 85-268 2-169 (260)
422 PF06957 COPI_C: Coatomer (COP 44.7 1E+02 0.0022 30.5 7.8 43 299-341 289-333 (422)
423 PF11848 DUF3368: Domain of un 44.3 83 0.0018 20.1 5.2 31 116-146 14-44 (48)
424 KOG2300 Uncharacterized conser 44.0 3.6E+02 0.0077 27.3 19.8 145 89-233 298-473 (629)
425 PF10475 DUF2450: Protein of u 42.8 1.6E+02 0.0035 27.5 8.7 52 79-132 104-155 (291)
426 PF11663 Toxin_YhaV: Toxin wit 42.8 31 0.00066 27.8 3.1 34 215-250 105-138 (140)
427 COG5191 Uncharacterized conser 41.9 51 0.0011 30.8 4.8 78 272-349 103-183 (435)
428 KOG3824 Huntingtin interacting 40.7 89 0.0019 29.2 6.2 47 319-365 127-173 (472)
429 COG4976 Predicted methyltransf 40.7 57 0.0012 29.1 4.7 55 287-341 6-62 (287)
430 PF11838 ERAP1_C: ERAP1-like C 40.3 3.2E+02 0.007 25.7 18.0 79 155-233 146-229 (324)
431 cd00280 TRFH Telomeric Repeat 40.3 1.6E+02 0.0034 25.4 7.1 31 283-313 118-148 (200)
432 cd08332 CARD_CASP2 Caspase act 40.1 74 0.0016 23.7 4.8 38 82-119 43-80 (90)
433 KOG1464 COP9 signalosome, subu 39.7 3.1E+02 0.0066 25.3 19.6 187 116-302 39-258 (440)
434 PF11848 DUF3368: Domain of un 39.6 1E+02 0.0022 19.7 5.2 33 216-248 13-45 (48)
435 PF14689 SPOB_a: Sensor_kinase 39.6 47 0.001 22.6 3.4 23 210-232 28-50 (62)
436 COG5108 RPO41 Mitochondrial DN 39.1 1.8E+02 0.0038 30.5 8.4 47 210-256 33-81 (1117)
437 PRK10564 maltose regulon perip 39.0 58 0.0012 30.4 4.8 38 208-245 260-297 (303)
438 KOG2659 LisH motif-containing 39.0 2.8E+02 0.0062 24.8 8.8 54 247-301 71-128 (228)
439 KOG2471 TPR repeat-containing 38.9 3.2E+02 0.0069 27.6 9.8 104 182-288 248-381 (696)
440 KOG4567 GTPase-activating prot 38.2 3.5E+02 0.0076 25.5 10.2 73 225-303 263-345 (370)
441 COG5108 RPO41 Mitochondrial DN 37.9 1.9E+02 0.004 30.4 8.4 23 47-69 33-55 (1117)
442 KOG3807 Predicted membrane pro 37.6 3.7E+02 0.008 25.6 13.4 17 326-342 380-396 (556)
443 PF14689 SPOB_a: Sensor_kinase 37.6 55 0.0012 22.3 3.5 44 89-132 6-51 (62)
444 PF04034 DUF367: Domain of unk 37.1 2.2E+02 0.0047 22.8 7.7 58 276-333 66-124 (127)
445 COG0735 Fur Fe2+/Zn2+ uptake r 36.6 1.7E+02 0.0036 24.1 6.8 22 247-268 27-48 (145)
446 COG0735 Fur Fe2+/Zn2+ uptake r 36.4 2.1E+02 0.0046 23.5 7.4 62 128-190 10-71 (145)
447 PF15469 Sec5: Exocyst complex 36.4 2.7E+02 0.0059 23.8 9.9 24 245-268 91-114 (182)
448 PF08967 DUF1884: Domain of un 36.3 42 0.00092 24.2 2.7 29 399-427 5-33 (85)
449 KOG0686 COP9 signalosome, subu 36.3 4.3E+02 0.0093 26.0 13.0 91 175-267 151-256 (466)
450 COG2178 Predicted RNA-binding 36.2 2.4E+02 0.0052 24.5 7.6 51 184-234 39-98 (204)
451 TIGR01503 MthylAspMut_E methyl 36.2 3E+02 0.0064 27.6 9.2 94 360-461 152-251 (480)
452 smart00777 Mad3_BUB1_I Mad3/BU 36.1 2.3E+02 0.0049 22.7 8.1 41 326-366 81-123 (125)
453 PF11525 CopK: Copper resistan 36.0 15 0.00033 25.3 0.5 21 487-507 8-28 (73)
454 COG0790 FOG: TPR repeat, SEL1 35.8 3.6E+02 0.0078 25.0 20.8 145 54-201 53-218 (292)
455 PF12968 DUF3856: Domain of Un 35.8 2.2E+02 0.0049 22.6 6.9 19 349-367 107-125 (144)
456 cd08326 CARD_CASP9 Caspase act 35.7 1.6E+02 0.0034 21.6 5.8 37 186-222 42-78 (84)
457 COG4941 Predicted RNA polymera 35.4 4.1E+02 0.0088 25.5 10.7 119 219-342 270-399 (415)
458 KOG2063 Vacuolar assembly/sort 35.4 6.5E+02 0.014 27.8 17.5 41 212-252 598-638 (877)
459 KOG0991 Replication factor C, 35.3 3.4E+02 0.0074 24.5 10.3 143 80-246 137-279 (333)
460 KOG0686 COP9 signalosome, subu 35.2 4.5E+02 0.0097 25.9 15.5 62 106-167 152-215 (466)
461 TIGR02270 conserved hypothetic 35.1 4.7E+02 0.01 26.0 25.1 19 417-435 349-368 (410)
462 smart00638 LPD_N Lipoprotein N 35.1 5.5E+02 0.012 26.8 24.1 63 71-135 308-371 (574)
463 KOG0292 Vesicle coat complex C 34.4 3.7E+02 0.0081 29.4 10.1 157 48-234 626-782 (1202)
464 PHA02875 ankyrin repeat protei 34.3 4.6E+02 0.01 25.8 14.3 208 47-264 4-223 (413)
465 COG4976 Predicted methyltransf 33.3 78 0.0017 28.3 4.4 58 249-308 4-62 (287)
466 PRK11639 zinc uptake transcrip 33.3 1.6E+02 0.0034 25.0 6.4 61 231-293 17-77 (169)
467 PF07720 TPR_3: Tetratricopept 32.8 1.1E+02 0.0024 18.1 4.3 14 317-330 10-23 (36)
468 PRK14962 DNA polymerase III su 32.7 5.5E+02 0.012 26.1 11.5 25 152-176 256-280 (472)
469 COG5159 RPN6 26S proteasome re 32.7 4.2E+02 0.009 24.8 15.8 135 110-244 9-168 (421)
470 KOG0551 Hsp90 co-chaperone CNS 32.6 2.2E+02 0.0048 27.1 7.4 88 278-365 83-176 (390)
471 PRK13184 pknD serine/threonine 32.4 7.6E+02 0.016 27.7 20.1 143 223-370 674-832 (932)
472 PRK11639 zinc uptake transcrip 32.3 2.2E+02 0.0047 24.1 7.1 59 131-190 18-76 (169)
473 PF10255 Paf67: RNA polymerase 31.9 2.9E+02 0.0064 27.3 8.6 56 281-336 127-192 (404)
474 PF07064 RIC1: RIC1; InterPro 31.4 4.2E+02 0.009 24.4 15.2 154 208-372 85-250 (258)
475 PF08225 Antimicrobial19: Pseu 31.0 32 0.00069 17.4 1.0 12 472-483 10-21 (23)
476 PF04090 RNA_pol_I_TF: RNA pol 30.9 3.2E+02 0.0069 24.0 7.8 59 310-368 43-102 (199)
477 PF09670 Cas_Cas02710: CRISPR- 30.2 5.4E+02 0.012 25.3 12.4 55 113-168 140-198 (379)
478 PF09454 Vps23_core: Vps23 cor 30.0 1.6E+02 0.0034 20.4 4.7 30 105-134 9-38 (65)
479 cd08323 CARD_APAF1 Caspase act 29.9 1.6E+02 0.0035 21.7 5.0 42 82-123 37-78 (86)
480 KOG0545 Aryl-hydrocarbon recep 29.8 4.4E+02 0.0094 24.1 8.7 89 79-168 184-293 (329)
481 KOG2034 Vacuolar sorting prote 29.4 7.9E+02 0.017 27.0 24.0 303 50-375 366-700 (911)
482 PF14044 NETI: NETI protein 28.6 52 0.0011 21.8 2.0 17 409-425 11-27 (57)
483 KOG0687 26S proteasome regulat 28.3 5.3E+02 0.012 24.6 12.1 11 443-453 319-329 (393)
484 PF04090 RNA_pol_I_TF: RNA pol 28.3 4.1E+02 0.0089 23.3 9.8 28 207-234 43-70 (199)
485 PF11817 Foie-gras_1: Foie gra 27.6 2.9E+02 0.0063 25.1 7.6 57 176-232 180-245 (247)
486 PF09454 Vps23_core: Vps23 cor 27.5 1.6E+02 0.0035 20.4 4.4 51 135-186 4-54 (65)
487 KOG0376 Serine-threonine phosp 27.4 1.3E+02 0.0028 30.0 5.3 102 181-287 11-116 (476)
488 PF02607 B12-binding_2: B12 bi 26.8 1.3E+02 0.0029 21.3 4.3 39 216-254 12-50 (79)
489 PF11817 Foie-gras_1: Foie gra 26.8 2.2E+02 0.0047 25.9 6.6 23 280-302 182-204 (247)
490 PF00244 14-3-3: 14-3-3 protei 26.7 4.8E+02 0.01 23.6 10.9 159 110-268 7-197 (236)
491 PF14561 TPR_20: Tetratricopep 26.1 2.8E+02 0.006 20.6 8.0 62 307-368 21-85 (90)
492 KOG3824 Huntingtin interacting 25.9 1.1E+02 0.0025 28.5 4.3 17 252-268 128-144 (472)
493 KOG1498 26S proteasome regulat 25.7 6.5E+02 0.014 24.7 17.4 183 172-383 50-253 (439)
494 cd07153 Fur_like Ferric uptake 25.5 1.7E+02 0.0037 22.7 5.0 46 211-256 6-51 (116)
495 cd08332 CARD_CASP2 Caspase act 25.4 2.9E+02 0.0062 20.5 5.8 34 187-220 47-80 (90)
496 COG2912 Uncharacterized conser 25.3 2E+02 0.0044 26.4 5.9 55 316-370 189-243 (269)
497 PF02847 MA3: MA3 domain; Int 25.3 1.5E+02 0.0032 22.9 4.6 23 79-101 8-30 (113)
498 KOG1524 WD40 repeat-containing 25.2 4.1E+02 0.009 27.1 8.2 89 275-366 572-668 (737)
499 KOG3364 Membrane protein invol 25.2 2.2E+02 0.0049 23.2 5.3 31 314-344 77-107 (149)
500 KOG2300 Uncharacterized conser 25.1 7.4E+02 0.016 25.2 28.5 348 15-365 53-508 (629)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.7e-112 Score=890.56 Aligned_cols=510 Identities=35% Similarity=0.659 Sum_probs=501.0
Q ss_pred EeecCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC-----------
Q 010405 2 VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ----------- 70 (511)
Q Consensus 2 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----------- 70 (511)
|++.|+.||+.+||+|+++|+++|++++|+++|++|++||+++||++|.+|++.|++++|+++|++|.+
T Consensus 149 m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~ 228 (697)
T PLN03081 149 VESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFV 228 (697)
T ss_pred HHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHH
Confidence 457899999999999999999999999999999999999999999999999999999999999999942
Q ss_pred ----------------------------CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhH
Q 010405 71 ----------------------------RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKE 122 (511)
Q Consensus 71 ----------------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 122 (511)
+|..+|++|+++|+++|++++|.++|++|.++|+++||+||.+|++.|++++
T Consensus 229 ~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~e 308 (697)
T PLN03081 229 VMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEE 308 (697)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHH
Confidence 4566789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 010405 123 ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202 (511)
Q Consensus 123 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 202 (511)
|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|++||..++++|+++|+++|++++|.++|++|.+
T Consensus 309 A~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~ 388 (697)
T PLN03081 309 ALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR 388 (697)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHH
Q 010405 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACM 282 (511)
Q Consensus 203 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 282 (511)
+|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|++|
T Consensus 389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l 468 (697)
T PLN03081 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468 (697)
T ss_pred CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999878999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHH
Q 010405 283 VDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAE 362 (511)
Q Consensus 283 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 362 (511)
+++|++.|++++|.+++++|+..|+..+|++|+.+|..+|+++.|..+++++.++.|++..+|..|+++|++.|+|++|.
T Consensus 469 i~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~ 548 (697)
T PLN03081 469 IELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAA 548 (697)
T ss_pred HHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCcccCCccccccCchhhhhhhhhh
Q 010405 363 EVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442 (511)
Q Consensus 363 ~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~ 442 (511)
++++.|+++|+.+.|+++|+++++.+|.|++|+..||+.+++++.+.++..+|++.||.||+.+++|++++++|+..+.+
T Consensus 549 ~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~ 628 (697)
T PLN03081 549 KVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRY 628 (697)
T ss_pred HHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhccCCCCCcEEEecccccCcchhhHHHHhhhhcCceEEEeCCCccccccCccccCCCCC
Q 010405 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLEYW 511 (511)
Q Consensus 443 ~~~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~i~~~d~~~~h~~~~g~~s~~~~~ 511 (511)
||||||++||++++|+|+||||+||||+|+|||+|+|+||++++|+|||||.+|||||++|+|||+|||
T Consensus 629 hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 629 HSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred ccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.9e-105 Score=859.95 Aligned_cols=505 Identities=42% Similarity=0.730 Sum_probs=491.8
Q ss_pred EeecCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC-----------
Q 010405 2 VVKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ----------- 70 (511)
Q Consensus 2 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----------- 70 (511)
|++.|+.||..+||+|+.+|+++|++++|.++|++|.+||+++||++|.+|++.|++++|+++|++|.+
T Consensus 314 ~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~ 393 (857)
T PLN03077 314 VVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIA 393 (857)
T ss_pred HHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHH
Confidence 457799999999999999999999999999999999999999999999999999999999999999942
Q ss_pred ----------------------------CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhH
Q 010405 71 ----------------------------RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKE 122 (511)
Q Consensus 71 ----------------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 122 (511)
++..+||+||++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++
T Consensus 394 ~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~e 473 (857)
T PLN03077 394 SVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFE 473 (857)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHH
Confidence 3556788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 010405 123 ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202 (511)
Q Consensus 123 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 202 (511)
|+++|++|.. +++||..||+.++.+|++.|+++.+.+++..+.+.|+.+|..++|+|+++|+++|++++|.++|+.+ .
T Consensus 474 A~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~ 551 (857)
T PLN03077 474 ALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-E 551 (857)
T ss_pred HHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-C
Confidence 9999999986 5999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHH
Q 010405 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACM 282 (511)
Q Consensus 203 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 282 (511)
+|.++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|++|
T Consensus 552 ~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~l 631 (857)
T PLN03077 552 KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV 631 (857)
T ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999668999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHH
Q 010405 283 VDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAE 362 (511)
Q Consensus 283 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 362 (511)
+++|++.|++++|.+++++|+++||..+|++|+.+|..+|+.+.|+.+.+++.+++|+++..|..|+++|+..|+|++|.
T Consensus 632 v~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~ 711 (857)
T PLN03077 632 VDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVA 711 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCcccCCccccccCchhhhhhhhhh
Q 010405 363 EVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGY 442 (511)
Q Consensus 363 ~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~ 442 (511)
++++.|+++|++++|++||+++++.+|.|.+|+.+||+.+++++.++++..+|++.||.||+..+++ .++++|+..+++
T Consensus 712 ~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~-~~~~~k~~~~~~ 790 (857)
T PLN03077 712 RVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMD-EIEVSKDDIFCG 790 (857)
T ss_pred HHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhcc-ccHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999998884 477899999999
Q ss_pred hhHHHHHHHHhccCCCCCcEEEecccccCcchhhHHHHhhhhcCceEEEeCCCccccccCccccCCC
Q 010405 443 HSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSCLE 509 (511)
Q Consensus 443 ~~~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~i~~~d~~~~h~~~~g~~s~~~ 509 (511)
||||||++||+++||+|+||||+||||+|+|||+++|+||++.+|+|||||.+|||||++|+|||+|
T Consensus 791 hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 791 HSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred ccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.5e-65 Score=549.37 Aligned_cols=494 Identities=22% Similarity=0.326 Sum_probs=433.1
Q ss_pred eecCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC----C-------
Q 010405 3 VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ----R------- 71 (511)
Q Consensus 3 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~------- 71 (511)
++.|..++..++|+|+++|+++|+++.|+++|++|++||+++||++|.+|++.|++++|+++|++|.. |
T Consensus 113 ~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ 192 (857)
T PLN03077 113 LSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPC 192 (857)
T ss_pred HHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999952 4
Q ss_pred ----------------------------ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHH
Q 010405 72 ----------------------------NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEA 123 (511)
Q Consensus 72 ----------------------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 123 (511)
|..++|+||.+|+++|++++|.++|++|+++|+++||+||.+|++.|++++|
T Consensus 193 ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eA 272 (857)
T PLN03077 193 VLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEG 272 (857)
T ss_pred HHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHH
Confidence 4556688889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 010405 124 LALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK 203 (511)
Q Consensus 124 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~ 203 (511)
+++|++|...|+.||..||+.++.+|++.|+++.|.+++..+.+.|+.||..+||+|+++|+++|++++|.++|++|..|
T Consensus 273 l~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~ 352 (857)
T PLN03077 273 LELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK 352 (857)
T ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHH
Q 010405 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMV 283 (511)
Q Consensus 204 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 283 (511)
|.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+ .|+.|+..+|+.|+
T Consensus 353 d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~-~g~~~~~~~~n~Li 431 (857)
T PLN03077 353 DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAER-KGLISYVVVANALI 431 (857)
T ss_pred CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHH-hCCCcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998 89999999999999
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHH
Q 010405 284 DLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEE 363 (511)
Q Consensus 284 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 363 (511)
++|+++|++++|.++|++|+ +||..+|++++.+|.+.|+.++|..+|++|....++|..+|..++.+|++.|.++.+.+
T Consensus 432 ~~y~k~g~~~~A~~vf~~m~-~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~ 510 (857)
T PLN03077 432 EMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKE 510 (857)
T ss_pred HHHHHcCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHH
Confidence 99999999999999999997 47999999999999999999999999999988544466788888877777777777777
Q ss_pred HHHHHHhCCCccCCceeEEEECC----------------------EEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCcc
Q 010405 364 VRKTMRKRKIKRAPGCSLIELDG----------------------VVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYN 421 (511)
Q Consensus 364 ~~~~m~~~g~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~ 421 (511)
++..|.+.|+.++.......+.. ....++.++..|++.+++. +++++|++.|+.
T Consensus 511 i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~----~lf~~M~~~g~~ 586 (857)
T PLN03077 511 IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAV----ELFNRMVESGVN 586 (857)
T ss_pred HHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHH----HHHHHHHHcCCC
Confidence 77777777765544322211100 0012356677788888887 788899999999
Q ss_pred cCCccccccCchhhhhhhh---hhhhHHHHHHHHhccCCCCCcEEEecccccCcchhhHHHHhhhhcCc------eEEEe
Q 010405 422 VETRSVMFDIEEEEKETVI---GYHSEKLALAFGLICTKPGSVIRIVKNIRICSDCHSAMKLVSKVFKR------KISIR 492 (511)
Q Consensus 422 p~~~~~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~------~i~~~ 492 (511)
||..++...+..+.+.+.+ ....+.+...+|+.|+..++. ++++.+.++|+..+|.++|.+|+.+ ..++.
T Consensus 587 Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~-~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ 665 (857)
T PLN03077 587 PDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA-CVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLN 665 (857)
T ss_pred CCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH-HHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHH
Confidence 9999987776666665554 345666666789888776666 7999999999999999999999644 23444
Q ss_pred CCCccccccCc
Q 010405 493 DRKHYHHFEDG 503 (511)
Q Consensus 493 d~~~~h~~~~g 503 (511)
.|+.+.+.+.|
T Consensus 666 ac~~~~~~e~~ 676 (857)
T PLN03077 666 ACRIHRHVELG 676 (857)
T ss_pred HHHHcCChHHH
Confidence 55444444444
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.6e-59 Score=497.24 Aligned_cols=479 Identities=17% Similarity=0.209 Sum_probs=411.7
Q ss_pred eecCC-CCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC----CChhHHH
Q 010405 3 VKNSF-AYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ----RNDVSWN 77 (511)
Q Consensus 3 ~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~ 77 (511)
.+.|+ .++...++.++..|.+.|.+++|..+|+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ ||..+|+
T Consensus 397 ~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tyn 476 (1060)
T PLN03218 397 EKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYT 476 (1060)
T ss_pred HhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 44564 578888899999999999999999999999999999999999999999999999999999974 8999999
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCC----CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 010405 78 SILGGLVRFGSVDDACRVFNQMP----KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153 (511)
Q Consensus 78 ~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 153 (511)
+||.+|++.|++++|.++|++|. .||..+|++||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|
T Consensus 477 sLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G 556 (1060)
T PLN03218 477 TLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSG 556 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999998 48999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHH--cCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCeeehHHHHHHHHHcCChHHHHHH
Q 010405 154 ALDYGNWVYSYIQK--KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD----KDVSAYTSAIFGLAMNGHSIEAFEL 227 (511)
Q Consensus 154 ~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~ 227 (511)
++++|.++|++|.+ .|+.||..+|++|+++|+++|++++|.++|+.|.+ ++..+||++|.+|++.|++++|+++
T Consensus 557 ~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~l 636 (1060)
T PLN03218 557 AVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSI 636 (1060)
T ss_pred CHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999986 67899999999999999999999999999999986 5678999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC---CC
Q 010405 228 FENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM---PM 304 (511)
Q Consensus 228 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~ 304 (511)
|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|+.|+.+|+++|++++|.++|++| +.
T Consensus 637 f~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k-~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~ 715 (1060)
T PLN03218 637 YDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK-QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKL 715 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999998 899999999999999999999999999999998 57
Q ss_pred CCCHHHHHHHHHHHHhcCchhHHHHHHHHHhh--cCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEE
Q 010405 305 KPDNVIWGTLLGACRVHRNAEMGQRIGNMLIE--SDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLI 382 (511)
Q Consensus 305 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 382 (511)
.||..+|++||.+|++.|++++|.+++++|.+ ..| |..+|..|+.+|.+.|++++|.++++.|.+.|+.|+...+..
T Consensus 716 ~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P-d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tyns 794 (1060)
T PLN03218 716 RPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP-NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRC 794 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 89999999999999999999999999999987 445 678999999999999999999999999999999988754433
Q ss_pred EEC-------------CEEEEEEeCCC--CCccHHHHHHHHHHHHHHHHHcCcccCCccccccCchhhhhhhhhhhhHHH
Q 010405 383 ELD-------------GVVHEFLAGDR--SHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKL 447 (511)
Q Consensus 383 ~~~-------------~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~l 447 (511)
.++ ..+..|-.+.. ......+++ .++++|++.|+.||..++...+ .+....--....+++
T Consensus 795 LIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al----~lf~eM~~~Gi~Pd~~T~~~vL-~cl~~~~~~~~~~~m 869 (1060)
T PLN03218 795 ITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWAL----MVYRETISAGTLPTMEVLSQVL-GCLQLPHDATLRNRL 869 (1060)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHH----HHHHHHHHCCCCCCHHHHHHHH-HHhcccccHHHHHHH
Confidence 221 11111111110 011223333 7899999999999988865544 222111112234555
Q ss_pred HHHHHhccCCCCCcE--EEecccccCcchhhHHHHhhhhcCceEE
Q 010405 448 ALAFGLICTKPGSVI--RIVKNIRICSDCHSAMKLVSKVFKRKIS 490 (511)
Q Consensus 448 a~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~s~~~~~~i~ 490 (511)
--.+++.+.+++... .+++.+ |..-.+|..+..+|..+.|+
T Consensus 870 ~~~m~~~~~~~~~~~y~~Li~g~--~~~~~~A~~l~~em~~~Gi~ 912 (1060)
T PLN03218 870 IENLGISADSQKQSNLSTLVDGF--GEYDPRAFSLLEEAASLGVV 912 (1060)
T ss_pred HHHhccCCCCcchhhhHHHHHhh--ccChHHHHHHHHHHHHcCCC
Confidence 566777776665442 344543 11225799999998888654
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=8.9e-59 Score=488.39 Aligned_cols=476 Identities=23% Similarity=0.333 Sum_probs=416.8
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhcCC-----CCChhHHHHHHHHHHHcCChHHHHHHHccCCC----CChhHHHH
Q 010405 8 AYDVFVKNSLIQFYSVCGRVRDARWVFDESD-----DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ----RNDVSWNS 78 (511)
Q Consensus 8 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~ 78 (511)
..+..+++++|..|.+.|++++|.++|+.|. .||..+|+.++.+|++.++++.|.+++..|.+ ||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3466799999999999999999999999885 46889999999999999999999999999964 89999999
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHH
Q 010405 79 ILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158 (511)
Q Consensus 79 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 158 (511)
|+++|+++|++++|.++|++|++||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 010405 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISP 238 (511)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 238 (511)
.+++..+.+.|+.+|..++++|+++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010405 239 DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318 (511)
Q Consensus 239 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~ 318 (511)
|..||+.++.+|++.|++++|.+++..|.+ .|+.|+..+|+.|+++|+++|++++|.++|++|. +||..+|++||.+|
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~-~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y 401 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIR-TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAGY 401 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHH-hCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHHH
Confidence 999999999999999999999999999998 8999999999999999999999999999999997 58999999999999
Q ss_pred HhcCchhHHHHHHHHHhh--cCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh-CCCccCCceeEEEECCEEEEEEeCC
Q 010405 319 RVHRNAEMGQRIGNMLIE--SDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK-RKIKRAPGCSLIELDGVVHEFLAGD 395 (511)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g~~~~~~~~~~~~~~~~~~~~~~~ 395 (511)
.++|+.++|.++|++|.+ ..| |..+|..++.+|.+.|++++|.++|+.|.+ .|+.|+...+... +.++
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l--------i~~l 472 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAP-NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM--------IELL 472 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH--------HHHH
Confidence 999999999999999988 455 568999999999999999999999999976 5887766544432 3445
Q ss_pred CCCccHHHHHHHHHHHHHHHHHcCcccCCccccccCchhhhhhhh---hhhhHHHHHHHHhccCCCCCcEEEecccccCc
Q 010405 396 RSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVI---GYHSEKLALAFGLICTKPGSVIRIVKNIRICS 472 (511)
Q Consensus 396 ~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~~~~~~~~~l~~~~ 472 (511)
...++.+++++ ++ ++.+..|+..++...+..+.+.+.+ ....+++ +++.+...+..+.+++-+..+|
T Consensus 473 ~r~G~~~eA~~----~~---~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l---~~~~p~~~~~y~~L~~~y~~~G 542 (697)
T PLN03081 473 GREGLLDEAYA----MI---RRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKL---YGMGPEKLNNYVVLLNLYNSSG 542 (697)
T ss_pred HhcCCHHHHHH----HH---HHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHH---hCCCCCCCcchHHHHHHHHhCC
Confidence 56778887773 33 3457889877644433333322221 1122222 4554544455566778889999
Q ss_pred chhhHHHHhhhhcCceEEEe-------CCCccccccCcc
Q 010405 473 DCHSAMKLVSKVFKRKISIR-------DRKHYHHFEDGS 504 (511)
Q Consensus 473 ~~~~~~~~~s~~~~~~i~~~-------d~~~~h~~~~g~ 504 (511)
+..+|.++...|..+.+-.. -.+..|.|-.|-
T Consensus 543 ~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d 581 (697)
T PLN03081 543 RQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGD 581 (697)
T ss_pred CHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCC
Confidence 99999999999998865321 123456665553
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.3e-55 Score=465.72 Aligned_cols=405 Identities=18% Similarity=0.249 Sum_probs=378.0
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCh-----hHHHHHHHHHHHcCChHHHHHHHccCCCCChhHHHHHHHH
Q 010405 8 AYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDV-----VSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGG 82 (511)
Q Consensus 8 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~ 82 (511)
.++...|..++..|.++|++++|+++|++|+.++. ..++.++.+|.+.|..++|+.+|+.|..||..+|+.++.+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a 446 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSV 446 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 45778899999999999999999999999986554 4566778889999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHhhCCC----CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHH
Q 010405 83 LVRFGSVDDACRVFNQMPK----RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158 (511)
Q Consensus 83 ~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 158 (511)
|++.|++++|.++|++|.+ ||..+|++||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 9999999999999999974 799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcC------CCCeeehHHHHHHHHHcCChHHHHHHHHHHH
Q 010405 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG------DKDVSAYTSAIFGLAMNGHSIEAFELFENMK 232 (511)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 232 (511)
.++|+.|.+.|+.||..+|++|+.+|++.|++++|.++|++|. .||.++|+++|.+|++.|++++|.++|++|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999995 4799999999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHH
Q 010405 233 SKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM---PMKPDNV 309 (511)
Q Consensus 233 ~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~ 309 (511)
+.|+.|+..+|+.++.+|++.|++++|.++|++|.+ .|+.||..+|+.|+++|++.|++++|.+++++| +..||..
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~-~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ 685 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK-KGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 999999999999999999999999999999999998 899999999999999999999999999999998 6889999
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHhh--cCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEECCE
Q 010405 310 IWGTLLGACRVHRNAEMGQRIGNMLIE--SDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGV 387 (511)
Q Consensus 310 ~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~ 387 (511)
+|++|+.+|.+.|++++|.++|++|.+ ..| +..+|+.|+.+|++.|++++|.+++++|.+.|+.|+..++...
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL---- 760 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL---- 760 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH----
Confidence 999999999999999999999999987 455 5789999999999999999999999999999998887665543
Q ss_pred EEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCcccCCcc
Q 010405 388 VHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRS 426 (511)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~ 426 (511)
+.+....+..+++. +++.+|.+.|+.||..+
T Consensus 761 ----L~a~~k~G~le~A~----~l~~~M~k~Gi~pd~~t 791 (1060)
T PLN03218 761 ----LVASERKDDADVGL----DLLSQAKEDGIKPNLVM 791 (1060)
T ss_pred ----HHHHHHCCCHHHHH----HHHHHHHHcCCCCCHHH
Confidence 34455667777776 78899999999999764
No 7
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.97 E-value=1.5e-31 Score=209.29 Aligned_cols=106 Identities=55% Similarity=0.999 Sum_probs=96.6
Q ss_pred ceeEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCcccCCccccccCchhhh--------hhhhhhhhHHHHH
Q 010405 378 GCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEK--------ETVIGYHSEKLAL 449 (511)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~--------~~~~~~~~~~la~ 449 (511)
+++|+++ |.|++|+.+||+. ++..+|...|+.|++..++|++.++++ +..+.+||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 5788766 9999999999988 456778889999999999998888765 5688999999999
Q ss_pred HHHhccCCCCCcEEEeccc-ccCcchhhHHHHhhhhcCceEEEeCCCcccccc
Q 010405 450 AFGLICTKPGSVIRIVKNI-RICSDCHSAMKLVSKVFKRKISIRDRKHYHHFE 501 (511)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~s~~~~~~i~~~d~~~~h~~~ 501 (511)
+||++++ ||+||+ |||+|||+++|+||++++|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999988 899999 999999999999999999999999999999996
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=5.5e-24 Score=233.27 Aligned_cols=358 Identities=12% Similarity=0.061 Sum_probs=266.4
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHccCCC---CChhHHHHHHHH
Q 010405 9 YDVFVKNSLIQFYSVCGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ---RNDVSWNSILGG 82 (511)
Q Consensus 9 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~ 82 (511)
.+...+..+...|...|++++|.+.|+++. +.+..++..+...+.+.|+.++|...|+++.+ .+...+..++..
T Consensus 497 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 576 (899)
T TIGR02917 497 DFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQY 576 (899)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHH
Confidence 345667778888888888888888888764 34667788888888888888888888887754 345567777888
Q ss_pred HHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 010405 83 LVRFGSVDDACRVFNQMPK---RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGN 159 (511)
Q Consensus 83 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 159 (511)
|.+.|++++|..+++++.+ .+...|..+...|.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|.
T Consensus 577 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 655 (899)
T TIGR02917 577 YLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAI 655 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888888887753 356678888888888888888888888887653 345667777788888888888888
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 010405 160 WVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGI 236 (511)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 236 (511)
.+++.+.+.. +.+..++..++..+...|++++|.++++.+.+ .+...+..+...+...|++++|++.|+++...+
T Consensus 656 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~- 733 (899)
T TIGR02917 656 TSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA- 733 (899)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-
Confidence 8888887764 44567777888888888888888888887764 244567777777778888888888888877653
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHH
Q 010405 237 SPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMK-PDNVIWGTL 314 (511)
Q Consensus 237 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l 314 (511)
|+..++..+..++...|+.++|.+.+..+.+ ..+.+...+..+...|.+.|++++|.+.|+++ ... ++...+..+
T Consensus 734 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 810 (899)
T TIGR02917 734 -PSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNL 810 (899)
T ss_pred -CCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4446666677777788888888888877776 23455677777777788888888888887776 222 356667777
Q ss_pred HHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010405 315 LGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKI 373 (511)
Q Consensus 315 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 373 (511)
...+...|+ .+|+..++++.+..|+++..+..++.+|...|++++|.++++++.+.+.
T Consensus 811 ~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 811 AWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 777777777 6677777777777777777777777777777777777777777776554
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=3.6e-24 Score=234.79 Aligned_cols=359 Identities=13% Similarity=0.096 Sum_probs=317.0
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHccCCC---CChhHHHHHH
Q 010405 7 FAYDVFVKNSLIQFYSVCGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ---RNDVSWNSIL 80 (511)
Q Consensus 7 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li 80 (511)
.++++.++..+...|...|++++|...|+++. +.+...+..+...+...|++++|.+.|+++.+ .+..++..+.
T Consensus 461 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 540 (899)
T TIGR02917 461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALA 540 (899)
T ss_pred CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 45678899999999999999999999999754 45677888899999999999999999999865 4677889999
Q ss_pred HHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHH
Q 010405 81 GGLVRFGSVDDACRVFNQMPK---RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDY 157 (511)
Q Consensus 81 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 157 (511)
..|.+.|+.++|...|+++.+ .+...+..++..|.+.|++++|+.+++.+.... +.+..+|..+..++...|++++
T Consensus 541 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 619 (899)
T TIGR02917 541 GLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNK 619 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999854 355678899999999999999999999998753 5678899999999999999999
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhC
Q 010405 158 GNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSK 234 (511)
Q Consensus 158 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 234 (511)
|...++.+.+.. +.+...+..+..+|.+.|++++|..+|+++.+ .+..+|..++..+...|++++|..+++.+...
T Consensus 620 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 698 (899)
T TIGR02917 620 AVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ 698 (899)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999998875 45677889999999999999999999998765 35678999999999999999999999999887
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHH
Q 010405 235 GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMK-PDNVIWG 312 (511)
Q Consensus 235 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~ 312 (511)
+ +++...+..+...+...|++++|...|..+.. ..|+..++..++.++.+.|++++|.+.++++ ... .+...+.
T Consensus 699 ~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 774 (899)
T TIGR02917 699 H-PKAALGFELEGDLYLRQKDYPAAIQAYRKALK---RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRT 774 (899)
T ss_pred C-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 5 44677788888899999999999999999987 3466678888999999999999999999887 333 4677888
Q ss_pred HHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 313 TLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 313 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
.+...+...|+.++|...++++.+..|+++.++..++.++...|+ ++|...+++..+..
T Consensus 775 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 775 ALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 888899999999999999999999999999999999999999999 88999999887753
No 10
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=1.4e-21 Score=185.64 Aligned_cols=355 Identities=15% Similarity=0.165 Sum_probs=307.1
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHccCCCCCh--hH-HHHHHHHHH
Q 010405 11 VFVKNSLIQFYSVCGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRND--VS-WNSILGGLV 84 (511)
Q Consensus 11 ~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~-~~~li~~~~ 84 (511)
..+|+.+.+.+-..|++++|+..++.+. +..+..|..+..++...|+.+.|.+.|.+..+-|+ .. .+.+....-
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlk 195 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLK 195 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHH
Confidence 4578889999999999999999999765 34678999999999999999999999999987443 33 334555666
Q ss_pred hcCCHHHHHHHHhhCCC--CC-hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCHHHHHH
Q 010405 85 RFGSVDDACRVFNQMPK--RS-LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPN-SAILVSLLSACAQLGALDYGNW 160 (511)
Q Consensus 85 ~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~ 160 (511)
..|++.+|...+.+..+ |. .+.|+.|...+-.+|+...|++.|++.... .|+ ..+|..|...|...+.++.|..
T Consensus 196 a~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred hhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHH
Confidence 78999999999888765 43 368999999999999999999999999875 454 5789999999999999999999
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-eeehHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 010405 161 VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD--KD-VSAYTSAIFGLAMNGHSIEAFELFENMKSKGIS 237 (511)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 237 (511)
.+.++.... +-...++..|...|...|.+|.|+..|++..+ |+ ..+|+.|..++-..|+..+|.+.|.+.+.. .
T Consensus 274 ~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~ 350 (966)
T KOG4626|consen 274 CYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--C 350 (966)
T ss_pred HHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--C
Confidence 999888763 34567788888999999999999999999876 33 358999999999999999999999998875 4
Q ss_pred CC-HHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH-HHHH
Q 010405 238 PD-SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE-LDHYACMVDLLGRAGLLEEAENFIASM-PMKPDNV-IWGT 313 (511)
Q Consensus 238 p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ 313 (511)
|+ ....+.|...+...|.+++|..+|....+ +.|. ....+.|...|-++|++++|..-+++. .++|+.. .++.
T Consensus 351 p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~N 427 (966)
T KOG4626|consen 351 PNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSN 427 (966)
T ss_pred CccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHh
Confidence 44 56888999999999999999999999876 5566 677899999999999999999999887 7888754 8899
Q ss_pred HHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010405 314 LLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKI 373 (511)
Q Consensus 314 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 373 (511)
+...|...|+.+.|.+.+.+++..+|.-..++..|+.+|-.+|+..+|+.-+++..+...
T Consensus 428 mGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 428 MGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred cchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 999999999999999999999999999999999999999999999999999998876443
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=1.2e-20 Score=186.52 Aligned_cols=292 Identities=12% Similarity=0.075 Sum_probs=196.6
Q ss_pred HHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC---HhHHHHHHHHHHhcCCHH
Q 010405 83 LVRFGSVDDACRVFNQMPK--R-SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPN---SAILVSLLSACAQLGALD 156 (511)
Q Consensus 83 ~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~t~~~ll~~~~~~~~~~ 156 (511)
+...|++++|...|+++.+ | +..+|..+...+.+.|++++|..+++.+...+..++ ..++..+...+...|+++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 4455566666666665543 2 334556666666666666666666666655321111 134555566666666666
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCe--------eehHHHHHHHHHcCChHHHHHHH
Q 010405 157 YGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV--------SAYTSAIFGLAMNGHSIEAFELF 228 (511)
Q Consensus 157 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~--------~~~~~li~~~~~~g~~~~A~~~~ 228 (511)
+|..+++.+.+.. +.+..+++.++.+|.+.|++++|.+.|+.+.+.+. ..|..+...+...|++++|...|
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 6666666666542 33455666666666666666666666666543211 12445666677788888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC
Q 010405 229 ENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKPD 307 (511)
Q Consensus 229 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 307 (511)
+++.+.. +.+...+..+...+...|++++|.++|+++.+ .+......++..++.+|.+.|++++|...++++ ...|+
T Consensus 204 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~ 281 (389)
T PRK11788 204 KKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEE-QDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPG 281 (389)
T ss_pred HHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 8877643 22345666777788888888888888888876 221112456778888889999999999988887 45677
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHH---cCCchHHHHHHHHHHhCCCccCCc
Q 010405 308 NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVE---TLKGENAEEVRKTMRKRKIKRAPG 378 (511)
Q Consensus 308 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~~~~~ 378 (511)
...+..+...+...|++++|..+++++.+..|++. .+..++..+.. .|+.+++..++++|.++++.++|.
T Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 282 ADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 77777788888999999999999999998888764 56656665554 458899999999999988888876
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=4.9e-20 Score=182.15 Aligned_cols=285 Identities=17% Similarity=0.095 Sum_probs=235.5
Q ss_pred HHHHHHHcCChHHHHHHHccCCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-C------hhHHHHHHHHHHHC
Q 010405 48 MINGYVRNGEILEGLKLFDKMPQ--R-NDVSWNSILGGLVRFGSVDDACRVFNQMPKR-S------LVSWVVLISGFAQN 117 (511)
Q Consensus 48 li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~------~~~~~~li~~~~~~ 117 (511)
....+...|++++|+..|+++.+ | +..++..+...|...|++++|..+++.+... + ...+..++..|.+.
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 34456778999999999999875 3 4457888888999999999999999887642 1 24678889999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc----HHHHHHHHHHHHhcCCHHHH
Q 010405 118 GRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD----SILCAALIDMYAKCGSIDLA 193 (511)
Q Consensus 118 g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~y~~~g~~~~A 193 (511)
|++++|+.+|+++.+.. +++..++..++..+...|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999998753 45678899999999999999999999999988653332 22456788889999999999
Q ss_pred HHHHHhcCC--C-CeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhc
Q 010405 194 MQVFHSYGD--K-DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH 270 (511)
Q Consensus 194 ~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 270 (511)
.+.|+++.+ | +..++..+...|.+.|++++|+++|+++...+......++..+..+|...|++++|...++.+.+
T Consensus 200 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~-- 277 (389)
T PRK11788 200 RALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE-- 277 (389)
T ss_pred HHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence 999998865 3 44577888899999999999999999998764333346788899999999999999999999987
Q ss_pred CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh---cCchhHHHHHHHHHhh
Q 010405 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKPDNVIWGTLLGACRV---HRNAEMGQRIGNMLIE 336 (511)
Q Consensus 271 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~ 336 (511)
..|+...+..++..+.+.|++++|.++++++ ...|+..++..++..+.. .|+.+++..+++++.+
T Consensus 278 -~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 278 -EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred -hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 3577667789999999999999999999876 667999999988887654 5689999999998887
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=2.3e-19 Score=186.85 Aligned_cols=353 Identities=12% Similarity=-0.021 Sum_probs=280.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCC--CCChhHHHHHHHHHHHcCChHHHHHHHccCCC--C-ChhHHHHHHHHHHhcCC
Q 010405 14 KNSLIQFYSVCGRVRDARWVFDESD--DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ--R-NDVSWNSILGGLVRFGS 88 (511)
Q Consensus 14 ~~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~ 88 (511)
+..+...|.+.|++++|+..|++.. .|+...|..+..+|.+.|++++|++.+++..+ | +...|..+..+|...|+
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 4456778889999999999999754 57788899999999999999999999999876 3 45688889999999999
Q ss_pred HHHHHHHHhhCCC---------------------------------CChhHHHHHHHH----------------------
Q 010405 89 VDDACRVFNQMPK---------------------------------RSLVSWVVLISG---------------------- 113 (511)
Q Consensus 89 ~~~A~~~~~~~~~---------------------------------~~~~~~~~li~~---------------------- 113 (511)
+++|...|..... .+..++..+...
T Consensus 210 ~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (615)
T TIGR00990 210 YADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEE 289 (615)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccc
Confidence 9999875543210 010111111000
Q ss_pred ----H----------HHCCChhHHHHHHHHHHHCC-CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHH
Q 010405 114 ----F----------AQNGRPKEALALFREMQSLD-LEP-NSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILC 177 (511)
Q Consensus 114 ----~----------~~~g~~~~A~~~~~~m~~~~-~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 177 (511)
+ ...+++++|++.|++....+ ..| +...+..+...+...|++++|...+++.++.. +.....|
T Consensus 290 ~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~ 368 (615)
T TIGR00990 290 TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSY 368 (615)
T ss_pred cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHH
Confidence 0 11257889999999998764 233 45678888888999999999999999999874 3346688
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 010405 178 AALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254 (511)
Q Consensus 178 ~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 254 (511)
..+...|...|++++|...|+...+ .+...|..+...+...|++++|+..|++..... +.+...+..+..++...|
T Consensus 369 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g 447 (615)
T TIGR00990 369 IKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEG 447 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCC
Confidence 8899999999999999999998764 356789999999999999999999999998853 224666777888899999
Q ss_pred CHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-H-------HHHHHHHHHHhcCchh
Q 010405 255 WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKPDN-V-------IWGTLLGACRVHRNAE 325 (511)
Q Consensus 255 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~-------~~~~ll~~~~~~g~~~ 325 (511)
++++|...|+...+ ..+.+...++.+..++...|++++|.+.|++. ...|+. . .++..+..+...|+++
T Consensus 448 ~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~ 525 (615)
T TIGR00990 448 SIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFI 525 (615)
T ss_pred CHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHH
Confidence 99999999999987 23445788999999999999999999999886 444421 1 1122222344569999
Q ss_pred HHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 326 MGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 326 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
+|..+++++++++|++...+..++.+|...|++++|.+.+++..+
T Consensus 526 eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 526 EAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999999999999988999999999999999999999998865
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=2.9e-18 Score=178.21 Aligned_cols=319 Identities=11% Similarity=-0.006 Sum_probs=199.7
Q ss_pred HHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHccCCC--C-ChhHHHHHHHHHHhcCCHH
Q 010405 17 LIQFYSVCGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ--R-NDVSWNSILGGLVRFGSVD 90 (511)
Q Consensus 17 li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~ 90 (511)
++....+.|++++|+.+++... +.+...+..++.+....|++++|++.|+++.+ | +...+..+...+.+.|+++
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~ 127 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYA 127 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHH
Confidence 3445556677777777766543 23444555555666667777777777777754 2 3455666667777777777
Q ss_pred HHHHHHhhCCC--C-ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010405 91 DACRVFNQMPK--R-SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK 167 (511)
Q Consensus 91 ~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 167 (511)
+|...|++..+ | +...|..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...++.+++
T Consensus 128 ~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~ 205 (656)
T PRK15174 128 TVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLP 205 (656)
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHh
Confidence 77777777653 2 4456667777777777777777777766554321 22223222 335667777777777777666
Q ss_pred cCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHH----HHHHHHHHHhCCCCCCH
Q 010405 168 KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIE----AFELFENMKSKGISPDS 240 (511)
Q Consensus 168 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~ 240 (511)
....++......+..++.+.|++++|...|++... .+...+..+...|...|++++ |+..|++..+.. +.+.
T Consensus 206 ~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~ 284 (656)
T PRK15174 206 FFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNV 284 (656)
T ss_pred cCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCH
Confidence 54333344444556667777777777777776654 244556666777777777764 677777776642 1234
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHH-HHHHH
Q 010405 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP-ELDHYACMVDLLGRAGLLEEAENFIASM-PMKPDNVIWG-TLLGA 317 (511)
Q Consensus 241 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~-~ll~~ 317 (511)
..+..+...+...|++++|...+++..+ ..| +...+..+..+|.+.|++++|.+.++++ ...|+...+. .+..+
T Consensus 285 ~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~a 361 (656)
T PRK15174 285 RIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAA 361 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 5666666777777777777777777765 223 3455666677777777777777777665 3445543333 23455
Q ss_pred HHhcCchhHHHHHHHHHhhcCCCC
Q 010405 318 CRVHRNAEMGQRIGNMLIESDQNH 341 (511)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~p~~ 341 (511)
+...|+.++|...++++.+..|++
T Consensus 362 l~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 362 LLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhChhh
Confidence 667777777777777777776654
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.85 E-value=3.9e-19 Score=169.10 Aligned_cols=343 Identities=14% Similarity=0.082 Sum_probs=294.0
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhcCCC--CChhHHH-HHHHHHHHcCChHHHHHHHccCCC--CC-hhHHHHHHHHH
Q 010405 10 DVFVKNSLIQFYSVCGRVRDARWVFDESDD--LDVVSWN-SMINGYVRNGEILEGLKLFDKMPQ--RN-DVSWNSILGGL 83 (511)
Q Consensus 10 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~ 83 (511)
.+..|..+..+|...|+.+.|.+.|.+..+ |+..... .+...+-..|+.++|...|.+..+ |. .++|+.|...+
T Consensus 149 fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f 228 (966)
T KOG4626|consen 149 FIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVF 228 (966)
T ss_pred hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHH
Confidence 467889999999999999999999987664 4434333 333445568999999999998876 33 57899999999
Q ss_pred HhcCCHHHHHHHHhhCCCCCh---hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhcCCHHHHH
Q 010405 84 VRFGSVDDACRVFNQMPKRSL---VSWVVLISGFAQNGRPKEALALFREMQSLDLEP-NSAILVSLLSACAQLGALDYGN 159 (511)
Q Consensus 84 ~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~ 159 (511)
-..|++..|...|++..+-|+ .+|-.|...|...+.+++|+..|.+.... .| ....+..+...|...|.+|.|+
T Consensus 229 ~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI 306 (966)
T KOG4626|consen 229 NAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAI 306 (966)
T ss_pred hhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHH
Confidence 999999999999999876443 68999999999999999999999988775 45 4677888888899999999999
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 010405 160 WVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGI 236 (511)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 236 (511)
..+++.++.. |--...|+.|..++-..|++.+|...|.+... .-..+.+.|...|...|..++|..+|..... +
T Consensus 307 ~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v 383 (966)
T KOG4626|consen 307 DTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--V 383 (966)
T ss_pred HHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--h
Confidence 9999999874 33467999999999999999999999998775 2446789999999999999999999999887 4
Q ss_pred CCC-HHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHHH
Q 010405 237 SPD-SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE-LDHYACMVDLLGRAGLLEEAENFIASM-PMKPDN-VIWG 312 (511)
Q Consensus 237 ~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~ 312 (511)
.|. ...++.|...|-+.|++++|+..|++..+ +.|+ ...|+.+...|-..|+.+.|.+.+.+. .+.|.- ...+
T Consensus 384 ~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhs 460 (966)
T KOG4626|consen 384 FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHS 460 (966)
T ss_pred ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHh
Confidence 555 56788999999999999999999999986 7888 688999999999999999999999886 677754 4788
Q ss_pred HHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchH
Q 010405 313 TLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGEN 360 (511)
Q Consensus 313 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 360 (511)
.|...+...|+..+|+..++..+++.|+.+.+|-.++.++---.+|.+
T Consensus 461 NLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 461 NLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred hHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 899999999999999999999999999999999999888777777766
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.84 E-value=8.2e-18 Score=186.60 Aligned_cols=347 Identities=10% Similarity=0.018 Sum_probs=240.6
Q ss_pred HHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHccCCC--CCh---hHHH------------
Q 010405 18 IQFYSVCGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ--RND---VSWN------------ 77 (511)
Q Consensus 18 i~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~---~~~~------------ 77 (511)
...+...|++++|+..|++.. +.|...+..+...+.+.|++++|+..|++..+ |+. ..|.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 456778899999999998754 34778899999999999999999999998865 322 1122
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHH-----
Q 010405 78 SILGGLVRFGSVDDACRVFNQMPK---RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC----- 149 (511)
Q Consensus 78 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~----- 149 (511)
.....+.+.|++++|...|++..+ .+...+..+...+...|++++|++.|++..+.. +.+...+..+...+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~ 434 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSP 434 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCH
Confidence 223457789999999999998764 355678888999999999999999999988753 22344444443333
Q ss_pred -------------------------------------HhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 010405 150 -------------------------------------AQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDL 192 (511)
Q Consensus 150 -------------------------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 192 (511)
...|++++|.+.++++++.. |.+..++..+...|.+.|++++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 34455566666666655543 2244455555666666666666
Q ss_pred HHHHHHhcCC--C-CeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHhccCCHHHHH
Q 010405 193 AMQVFHSYGD--K-DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI---------SYIAVLSACSHLGWVEKGF 260 (511)
Q Consensus 193 A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------t~~~ll~~~~~~g~~~~a~ 260 (511)
|...|+++.+ | +...+..+...+...++.++|+..++.+......++.. .+..+...+...|+.++|.
T Consensus 514 A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 514 ADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 6666665432 2 22333333344445566666666655543221111111 1123344566667777777
Q ss_pred HHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcC
Q 010405 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338 (511)
Q Consensus 261 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 338 (511)
.+++. .+++...+..+...+.+.|++++|.+.|++. ...| +...+..+...+...|+.++|++.++.+.+..
T Consensus 594 ~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~ 667 (1157)
T PRK11447 594 ALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA 667 (1157)
T ss_pred HHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 76651 2345566778888999999999999999887 4455 56688888899999999999999999999899
Q ss_pred CCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 339 QNHDGRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 339 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
|+++..+..++.++...|++++|.++++.+.+..
T Consensus 668 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 668 NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 9888888889999999999999999999887654
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=1.8e-17 Score=172.37 Aligned_cols=345 Identities=12% Similarity=-0.016 Sum_probs=274.7
Q ss_pred HhcCChHHHHHHHhcCCC------CChhHHHHHHHHHHHcCChHHHHHHHccCCC---CChhHHHHHHHHHHhcCCHHHH
Q 010405 22 SVCGRVRDARWVFDESDD------LDVVSWNSMINGYVRNGEILEGLKLFDKMPQ---RNDVSWNSILGGLVRFGSVDDA 92 (511)
Q Consensus 22 ~~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A 92 (511)
.+..+++.---.|..-++ .+......++..+.+.|++++|+.+++.... .+......++......|++++|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHH
Confidence 355566665555655442 1223345567788999999999999988864 3455666666777889999999
Q ss_pred HHHHhhCCC--C-ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010405 93 CRVFNQMPK--R-SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC 169 (511)
Q Consensus 93 ~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 169 (511)
...|+++.+ | +...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...+..+....
T Consensus 96 ~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 96 LQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 999999864 3 55788999999999999999999999998753 3356788889999999999999999999887764
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC----eeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 010405 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD----VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIA 245 (511)
Q Consensus 170 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 245 (511)
.. +...+..+ ..+...|++++|...++.+.+.+ ...+..+...+...|++++|+..|+++.... +.+...+..
T Consensus 175 P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~ 251 (656)
T PRK15174 175 PP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRS 251 (656)
T ss_pred CC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence 33 34444444 34788999999999999876532 2334455678889999999999999998764 234667778
Q ss_pred HHHHHhccCCHHH----HHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 010405 246 VLSACSHLGWVEK----GFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKPD-NVIWGTLLGACR 319 (511)
Q Consensus 246 ll~~~~~~g~~~~----a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~ 319 (511)
+..++...|+.++ |...|+.+.+. -+.+...+..+...+.+.|++++|...+++. ...|+ ...+..+..++.
T Consensus 252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~ 329 (656)
T PRK15174 252 LGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALR 329 (656)
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 8889999999986 89999999872 2335778999999999999999999999987 44564 556777888899
Q ss_pred hcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 320 VHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
..|++++|...++++.+..|+++..+..++.++...|++++|.+.+++..+..
T Consensus 330 ~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 330 QVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999887667777889999999999999999887654
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.82 E-value=1.3e-16 Score=177.11 Aligned_cols=347 Identities=12% Similarity=0.028 Sum_probs=276.5
Q ss_pred HHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHccCCC--C-ChhHHHHHHHHHHhcCCHHH
Q 010405 18 IQFYSVCGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ--R-NDVSWNSILGGLVRFGSVDD 91 (511)
Q Consensus 18 i~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~ 91 (511)
...+.+.|++++|+..|++.. +.+...+..+...+...|++++|++.|+++.+ | +...+..+...|. .++.++
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~ 436 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEK 436 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHH
Confidence 456778999999999999765 44667888899999999999999999999875 3 4556777777775 467899
Q ss_pred HHHHHhhCCCCC------------hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 010405 92 ACRVFNQMPKRS------------LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGN 159 (511)
Q Consensus 92 A~~~~~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 159 (511)
|..+++.+.... ...+..+...+...|++++|++.|++..+.. +-+...+..+...+...|++++|.
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 999998876421 1245567788899999999999999998864 335677888999999999999999
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC----e---------eehHHHHHHHHHcCChHHHHH
Q 010405 160 WVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD----V---------SAYTSAIFGLAMNGHSIEAFE 226 (511)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~----~---------~~~~~li~~~~~~g~~~~A~~ 226 (511)
..++++++.. +.+...+..+...+.+.|+.++|+..++.+.... . ..+..+...+...|+.++|++
T Consensus 516 ~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~ 594 (1157)
T PRK11447 516 ALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA 594 (1157)
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence 9999998764 4455666666667788999999999999886421 1 112345667888999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC
Q 010405 227 LFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMK 305 (511)
Q Consensus 227 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~ 305 (511)
+++. .+++...+..+...+...|+.++|+..|+.+.+. -+.+...+..++..|...|++++|++.++.. ...
T Consensus 595 ~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~ 667 (1157)
T PRK11447 595 LLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA 667 (1157)
T ss_pred HHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 9872 2345566777888999999999999999999872 2345788999999999999999999999987 344
Q ss_pred C-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCc------hhHHHHHHHHHHcCCchHHHHHHHHHHh-CCCc
Q 010405 306 P-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD------GRYILLSNIYVETLKGENAEEVRKTMRK-RKIK 374 (511)
Q Consensus 306 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g~~ 374 (511)
| +...+..+..++...|++++|.++++++....|+++ ..+..++.++...|++++|.+.++.... .|+.
T Consensus 668 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 668 NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 5 445667777888999999999999999999766543 3566678999999999999999987753 3443
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=2.1e-16 Score=167.92 Aligned_cols=356 Identities=9% Similarity=0.006 Sum_probs=232.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCC---CChhHHHHHHHHHHHcCChHHHHHHHccCCC---CChhHHHHHHHHHHhcC
Q 010405 14 KNSLIQFYSVCGRVRDARWVFDESDD---LDVVSWNSMINGYVRNGEILEGLKLFDKMPQ---RNDVSWNSILGGLVRFG 87 (511)
Q Consensus 14 ~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g 87 (511)
..-.+......|+.++|+++|.+..+ .+...+..+...+...|++++|.++|++..+ .+...+..+...+...|
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 33444555555666666666655332 2333456666666666666666666666432 23444555555566666
Q ss_pred CHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCH---------
Q 010405 88 SVDDACRVFNQMPK--R-SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGAL--------- 155 (511)
Q Consensus 88 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~--------- 155 (511)
+.++|...+++..+ | +.. |..+...+...|+.++|+..++++.+.. +.+...+..+..++...+..
T Consensus 98 ~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~ 175 (765)
T PRK10049 98 QYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDD 175 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence 66666666665542 2 333 5555556666666666666666665542 11333333334333333333
Q ss_pred -------------------------------------HHHHHHHHHHHHc-CCCccHH--HHHH---HHHHHHhcCCHHH
Q 010405 156 -------------------------------------DYGNWVYSYIQKK-CIKLDSI--LCAA---LIDMYAKCGSIDL 192 (511)
Q Consensus 156 -------------------------------------~~a~~~~~~~~~~-~~~~~~~--~~~~---li~~y~~~g~~~~ 192 (511)
++|++.++.+.+. ...|+.. ...+ .+.++...|++++
T Consensus 176 ~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~e 255 (765)
T PRK10049 176 ANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKD 255 (765)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHH
Confidence 4455555555543 1122211 1111 1234457799999
Q ss_pred HHHHHHhcCCCC--eee--hHHHHHHHHHcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHH
Q 010405 193 AMQVFHSYGDKD--VSA--YTSAIFGLAMNGHSIEAFELFENMKSKGISP---DSISYIAVLSACSHLGWVEKGFYYFHS 265 (511)
Q Consensus 193 A~~~~~~~~~~~--~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~ 265 (511)
|++.|+.+.+.+ ... -..+...|...|++++|+.+|+++....... .......+..++...|++++|..+++.
T Consensus 256 A~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~ 335 (765)
T PRK10049 256 VISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAH 335 (765)
T ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 999999988642 122 2225678999999999999999987643211 123456667788999999999999999
Q ss_pred chhhcC----------CCCC---HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHH
Q 010405 266 MFDVHG----------IKPE---LDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRI 330 (511)
Q Consensus 266 ~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 330 (511)
+.+... -.|+ ...+..+...+...|++++|++.++++ ...| +...+..+...+...|++++|++.
T Consensus 336 ~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~ 415 (765)
T PRK10049 336 TINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENE 415 (765)
T ss_pred HhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 987211 1123 234567788899999999999999987 3344 566888888999999999999999
Q ss_pred HHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010405 331 GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 331 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 371 (511)
++++++..|+++..+..++..+...|++++|+.+++.+.+.
T Consensus 416 l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 416 LKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998764
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.79 E-value=7.5e-16 Score=160.63 Aligned_cols=324 Identities=11% Similarity=-0.018 Sum_probs=249.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHccCCC--CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHCCC
Q 010405 45 WNSMINGYVRNGEILEGLKLFDKMPQ--RNDVSWNSILGGLVRFGSVDDACRVFNQMPK--R-SLVSWVVLISGFAQNGR 119 (511)
Q Consensus 45 ~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~ 119 (511)
+......+.+.|++++|+..|++..+ |+...|..+..+|.+.|++++|...+++..+ | +...|..+..+|...|+
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 45667788999999999999999865 7888899999999999999999999998764 3 45689999999999999
Q ss_pred hhHHHHHHHHHHHCCC----------------------------CC-CHhHHHHHHHH----------------------
Q 010405 120 PKEALALFREMQSLDL----------------------------EP-NSAILVSLLSA---------------------- 148 (511)
Q Consensus 120 ~~~A~~~~~~m~~~~~----------------------------~p-~~~t~~~ll~~---------------------- 148 (511)
+++|+..|......+- .| +...+..+...
T Consensus 210 ~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (615)
T TIGR00990 210 YADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEE 289 (615)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccc
Confidence 9999876654432110 01 00000000000
Q ss_pred ----H----------HhcCCHHHHHHHHHHHHHcC--CCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CeeehH
Q 010405 149 ----C----------AQLGALDYGNWVYSYIQKKC--IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD--K-DVSAYT 209 (511)
Q Consensus 149 ----~----------~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~ 209 (511)
+ ...+++++|.+.|+.+++.+ .+.....++.+...|...|++++|+..|++..+ | +..+|.
T Consensus 290 ~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~ 369 (615)
T TIGR00990 290 TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYI 369 (615)
T ss_pred cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH
Confidence 0 11256788899999988765 233456788889999999999999999998765 3 345788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCC-CHhHHHHHHHHHHH
Q 010405 210 SAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP-ELDHYACMVDLLGR 288 (511)
Q Consensus 210 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~ 288 (511)
.+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...|++..+ ..| +...+..+..++.+
T Consensus 370 ~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~---l~P~~~~~~~~la~~~~~ 445 (615)
T TIGR00990 370 KRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID---LDPDFIFSHIQLGVTQYK 445 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCccCHHHHHHHHHHHHH
Confidence 88888999999999999999998753 23467888888899999999999999999987 334 46778888999999
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHH-------HHHHHHHcCCch
Q 010405 289 AGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYIL-------LSNIYVETLKGE 359 (511)
Q Consensus 289 ~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~-------l~~~~~~~g~~~ 359 (511)
.|++++|+..|++. ...| +...|+.+...+...|++++|+..+++++++.|.+...+.. ....+...|+++
T Consensus 446 ~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~ 525 (615)
T TIGR00990 446 EGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFI 525 (615)
T ss_pred CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHH
Confidence 99999999999886 4445 46688888888999999999999999999988865433321 122334469999
Q ss_pred HHHHHHHHHHhCC
Q 010405 360 NAEEVRKTMRKRK 372 (511)
Q Consensus 360 ~A~~~~~~m~~~g 372 (511)
+|.+++++..+..
T Consensus 526 eA~~~~~kAl~l~ 538 (615)
T TIGR00990 526 EAENLCEKALIID 538 (615)
T ss_pred HHHHHHHHHHhcC
Confidence 9999998877643
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.76 E-value=4.9e-15 Score=157.51 Aligned_cols=332 Identities=9% Similarity=-0.009 Sum_probs=247.9
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhcC---CCCChhHHHHHHHHHHHcCChHHHHHHHccCCC--C-ChhHHHHHHHHH
Q 010405 10 DVFVKNSLIQFYSVCGRVRDARWVFDES---DDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ--R-NDVSWNSILGGL 83 (511)
Q Consensus 10 ~~~~~~~li~~~~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~ 83 (511)
+...+..+...+.+.|++++|..+|++. .+.+...+..++..+...|++++|+..+++..+ | +.. +..+..++
T Consensus 48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l 126 (765)
T PRK10049 48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVY 126 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHH
Confidence 3445788888999999999999999874 345677788888889999999999999988864 3 444 77888888
Q ss_pred HhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHCCChhHHHH-----------------------------------
Q 010405 84 VRFGSVDDACRVFNQMPK--R-SLVSWVVLISGFAQNGRPKEALA----------------------------------- 125 (511)
Q Consensus 84 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~----------------------------------- 125 (511)
...|+.++|...++++.+ | +...+..+...+...|..++|++
T Consensus 127 ~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~ 206 (765)
T PRK10049 127 KRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEK 206 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChh
Confidence 899999999999988764 3 44455566666666666555444
Q ss_pred -----------HHHHHHHC-CCCCCHh-HHH----HHHHHHHhcCCHHHHHHHHHHHHHcCCC-ccHHHHHHHHHHHHhc
Q 010405 126 -----------LFREMQSL-DLEPNSA-ILV----SLLSACAQLGALDYGNWVYSYIQKKCIK-LDSILCAALIDMYAKC 187 (511)
Q Consensus 126 -----------~~~~m~~~-~~~p~~~-t~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~y~~~ 187 (511)
.++.+.+. ...|+.. .+. ..+.++...|+.++|+..|+.+.+.+.+ |+ .....+..+|...
T Consensus 207 ~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~ 285 (765)
T PRK10049 207 ERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKL 285 (765)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhc
Confidence 34444322 1122221 111 1133456778999999999999987632 22 2223357889999
Q ss_pred CCHHHHHHHHHhcCCCCe-------eehHHHHHHHHHcCChHHHHHHHHHHHhCCC-----------CCCH---HHHHHH
Q 010405 188 GSIDLAMQVFHSYGDKDV-------SAYTSAIFGLAMNGHSIEAFELFENMKSKGI-----------SPDS---ISYIAV 246 (511)
Q Consensus 188 g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~~---~t~~~l 246 (511)
|++++|+..|+++.+.+. ..+..+..++...|++++|..+++++..... .|+. ..+..+
T Consensus 286 g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~ 365 (765)
T PRK10049 286 HQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLL 365 (765)
T ss_pred CCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHH
Confidence 999999999998765321 2355566688999999999999999987521 2332 234556
Q ss_pred HHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCch
Q 010405 247 LSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKPD-NVIWGTLLGACRVHRNA 324 (511)
Q Consensus 247 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~ 324 (511)
...+...|+.++|+..++++.. ..+.+...+..+...+...|++++|++.+++. ...|+ ...+..+...+...|++
T Consensus 366 a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~ 443 (765)
T PRK10049 366 SQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEW 443 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCH
Confidence 6788899999999999999987 34455788999999999999999999999987 55675 45666677788999999
Q ss_pred hHHHHHHHHHhhcCCCCchhH
Q 010405 325 EMGQRIGNMLIESDQNHDGRY 345 (511)
Q Consensus 325 ~~a~~~~~~~~~~~p~~~~~~ 345 (511)
++|+.+++++++..|+++.+.
T Consensus 444 ~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 444 RQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHHHHHHHHhCCCCHHHH
Confidence 999999999999999987543
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.73 E-value=7.7e-14 Score=145.93 Aligned_cols=355 Identities=10% Similarity=0.030 Sum_probs=235.4
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCChhH-HHHH--HHHHHHcCChHHHHHHHccCCC--C-ChhHHHHHHHHHHhcCCH
Q 010405 16 SLIQFYSVCGRVRDARWVFDESDDLDVVS-WNSM--INGYVRNGEILEGLKLFDKMPQ--R-NDVSWNSILGGLVRFGSV 89 (511)
Q Consensus 16 ~li~~~~~~g~~~~A~~~f~~~~~~~~~~-~~~l--i~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~ 89 (511)
.++..+...|+.++|+..+++...|+... +..+ ...+...|++++|+++|+++.+ | +...+..++..|...++.
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~ 152 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRG 152 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCH
Confidence 77777777788888888888776554333 3333 3466677888888888888865 2 355666777778888888
Q ss_pred HHHHHHHhhCCCCCh--hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHH------
Q 010405 90 DDACRVFNQMPKRSL--VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV------ 161 (511)
Q Consensus 90 ~~A~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~------ 161 (511)
++|++.++++...+. ..+-.++..+...++..+|++.++++.+.. +-+...+..+..+..+.|-...|.++
T Consensus 153 ~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~ 231 (822)
T PRK14574 153 GVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPN 231 (822)
T ss_pred HHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc
Confidence 888888888775433 333333333333555555888888887753 22455555555555554433333222
Q ss_pred ------------------------------------------HHHHHHc-C-CCccHHH-HHH---HHHHHHhcCCHHHH
Q 010405 162 ------------------------------------------YSYIQKK-C-IKLDSIL-CAA---LIDMYAKCGSIDLA 193 (511)
Q Consensus 162 ------------------------------------------~~~~~~~-~-~~~~~~~-~~~---li~~y~~~g~~~~A 193 (511)
++.+... + .|+.... ..+ .+-++.+.|+..++
T Consensus 232 ~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~v 311 (822)
T PRK14574 232 LVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADL 311 (822)
T ss_pred ccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHH
Confidence 2222221 1 1111111 122 23445667888888
Q ss_pred HHHHHhcCCC--Cee--ehHHHHHHHHHcCChHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010405 194 MQVFHSYGDK--DVS--AYTSAIFGLAMNGHSIEAFELFENMKSKG-----ISPDSISYIAVLSACSHLGWVEKGFYYFH 264 (511)
Q Consensus 194 ~~~~~~~~~~--~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 264 (511)
++.|+.+... .+. +-.++..+|...+++++|+.+|+++.... ..++......|..++...+++++|..+++
T Consensus 312 i~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~ 391 (822)
T PRK14574 312 IKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAV 391 (822)
T ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHH
Confidence 8888888753 223 34567788888889999999998886542 12233335677888888899999999888
Q ss_pred HchhhcCC----------CCC---HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHH
Q 010405 265 SMFDVHGI----------KPE---LDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQR 329 (511)
Q Consensus 265 ~~~~~~~~----------~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 329 (511)
.+.+.... .|+ ...+..++..+...|++.+|++.++++ ...| |...+..+...+...|.+.+|++
T Consensus 392 ~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~ 471 (822)
T PRK14574 392 NYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQ 471 (822)
T ss_pred HHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 88762110 122 233455677788889999999888887 3334 67778888888888899999999
Q ss_pred HHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010405 330 IGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 330 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 371 (511)
.++.+..+.|++..+...++..+...|+|++|..+.+.+.+.
T Consensus 472 ~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 472 ELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 998888888888888888888888889999998888777653
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.73 E-value=5.9e-14 Score=146.81 Aligned_cols=349 Identities=13% Similarity=0.077 Sum_probs=269.5
Q ss_pred HHHhcCChHHHHHHHhcCCC--CCh-hHHHHHHHHHHHcCChHHHHHHHccCCCCChhHHHHH---HHHHHhcCCHHHHH
Q 010405 20 FYSVCGRVRDARWVFDESDD--LDV-VSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSI---LGGLVRFGSVDDAC 93 (511)
Q Consensus 20 ~~~~~g~~~~A~~~f~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l---i~~~~~~g~~~~A~ 93 (511)
...+.|+++.|+..|++..+ |+. .....++..+...|+.++|+..+++...|+...+..+ ...|...|++++|.
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 44588999999999998774 332 1233888889999999999999999997754444333 45788889999999
Q ss_pred HHHhhCCC--C-ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 010405 94 RVFNQMPK--R-SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCI 170 (511)
Q Consensus 94 ~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 170 (511)
++|+++.+ | |...+..++..|...++.++|++.++++... .|+...+..++..+...++..+|.+.++++.+..
T Consensus 123 ely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~- 199 (822)
T PRK14574 123 ALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA- 199 (822)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-
Confidence 99999875 3 4567778889999999999999999999875 5666666555555555666766999999999985
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC------------------------------------------------
Q 010405 171 KLDSILCAALIDMYAKCGSIDLAMQVFHSYGD------------------------------------------------ 202 (511)
Q Consensus 171 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~------------------------------------------------ 202 (511)
|.+...+..++.+..+.|-...|.++...-+.
T Consensus 200 P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~ 279 (822)
T PRK14574 200 PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLT 279 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHh
Confidence 55677777788888777776666555443220
Q ss_pred -----CCe-eehH----HHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcC-
Q 010405 203 -----KDV-SAYT----SAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG- 271 (511)
Q Consensus 203 -----~~~-~~~~----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~- 271 (511)
|.. ..|. -.+-++...|+..++++.|+.+...|.+....+-..+.++|...+.+++|..+|..+....+
T Consensus 280 ~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~ 359 (822)
T PRK14574 280 RWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGK 359 (822)
T ss_pred hccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccc
Confidence 100 0111 12446777899999999999999888664556788899999999999999999999976332
Q ss_pred ---CCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCC-C-------------C--CHHH-HHHHHHHHHhcCchhHHHHHH
Q 010405 272 ---IKPELDHYACMVDLLGRAGLLEEAENFIASMPM-K-------------P--DNVI-WGTLLGACRVHRNAEMGQRIG 331 (511)
Q Consensus 272 ---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-------------p--~~~~-~~~ll~~~~~~g~~~~a~~~~ 331 (511)
.+++......|.-+|...+++++|..+++.+.. . | |-.. ...++..+.-.|++.+|++.+
T Consensus 360 ~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~l 439 (822)
T PRK14574 360 TFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKL 439 (822)
T ss_pred ccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 233455567899999999999999999988721 1 2 2222 233456688999999999999
Q ss_pred HHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010405 332 NMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 332 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 371 (511)
+++....|.|+.....++.++...|...+|++.++.....
T Consensus 440 e~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 440 EDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999776653
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.73 E-value=1.3e-13 Score=147.18 Aligned_cols=282 Identities=11% Similarity=0.047 Sum_probs=214.9
Q ss_pred HHhcCCHHHHHHHHhhCCC-C-----ChhHHHHHHHHHHHCCC---hhHHHHH----------------------HHHHH
Q 010405 83 LVRFGSVDDACRVFNQMPK-R-----SLVSWVVLISGFAQNGR---PKEALAL----------------------FREMQ 131 (511)
Q Consensus 83 ~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~---~~~A~~~----------------------~~~m~ 131 (511)
..+.|+.++|.++|+.... + +...-+-++..|.+.+. ..+|+.+ +....
T Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (987)
T PRK09782 386 LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIV 465 (987)
T ss_pred HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHH
Confidence 3567888888888887654 1 22344466777777665 3344333 11111
Q ss_pred HC-CC-CC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCe
Q 010405 132 SL-DL-EP--NSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD--KDV 205 (511)
Q Consensus 132 ~~-~~-~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~ 205 (511)
.. +. ++ +...|..+..++.. ++.++|...+....... |+......+...+...|++++|...|+++.. ++.
T Consensus 466 ~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~ 542 (987)
T PRK09782 466 RLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSN 542 (987)
T ss_pred HhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc
Confidence 11 11 33 56677777777766 78888999888877663 4544444455556789999999999998764 444
Q ss_pred eehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHH
Q 010405 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS-ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVD 284 (511)
Q Consensus 206 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 284 (511)
..+..+...+.+.|+.++|...+++..... |+. ..+..+.......|++++|...+++..+ ..|+...+..+..
T Consensus 543 ~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~ 617 (987)
T PRK09782 543 EDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARAT 617 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHH
Confidence 567777888899999999999999998764 433 3333444455567999999999999987 4577889999999
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHH
Q 010405 285 LLGRAGLLEEAENFIASM-PMKPD-NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAE 362 (511)
Q Consensus 285 ~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 362 (511)
++.+.|++++|...+++. ...|+ ...+..+..++...|+.++|+..++++.+..|+++..+..++.+|...|++++|+
T Consensus 618 ~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~ 697 (987)
T PRK09782 618 IYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQ 697 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999987 55664 5567777778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCC
Q 010405 363 EVRKTMRKRK 372 (511)
Q Consensus 363 ~~~~~m~~~g 372 (511)
..+++..+..
T Consensus 698 ~~l~~Al~l~ 707 (987)
T PRK09782 698 HYARLVIDDI 707 (987)
T ss_pred HHHHHHHhcC
Confidence 9999987644
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.70 E-value=2.9e-13 Score=144.57 Aligned_cols=339 Identities=10% Similarity=0.050 Sum_probs=256.4
Q ss_pred CChHHHHHHHhcCCCC---ChhHHHHHHHHHHHcCChHHHHHHHccCCC--C----ChhHHHHHHHHHHhcCC---HHHH
Q 010405 25 GRVRDARWVFDESDDL---DVVSWNSMINGYVRNGEILEGLKLFDKMPQ--R----NDVSWNSILGGLVRFGS---VDDA 92 (511)
Q Consensus 25 g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~----~~~~~~~li~~~~~~g~---~~~A 92 (511)
+...+|...+..|-+. +.....-+.-...+.|+.++|.++|++... + +...-+-|+..|.+.+. ..++
T Consensus 356 ~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 435 (987)
T PRK09782 356 RNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKV 435 (987)
T ss_pred CchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHH
Confidence 5555666555555432 444444444456678888888888887764 1 22334466666766655 2222
Q ss_pred HHH-------------------------HhhCCC---C--ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHH
Q 010405 93 CRV-------------------------FNQMPK---R--SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142 (511)
Q Consensus 93 ~~~-------------------------~~~~~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 142 (511)
..+ +..... + +...|..+..++.. +++++|+..|.+.... .|+....
T Consensus 436 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~ 512 (987)
T PRK09782 436 AILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQH 512 (987)
T ss_pred HHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHH
Confidence 222 111111 2 55678888888876 8999999988887765 4676555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHH---HHHHcC
Q 010405 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIF---GLAMNG 219 (511)
Q Consensus 143 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~g 219 (511)
..+..++...|++++|...++.+... +|+...+..+..++.+.|+.++|.+.|+...+.+...++.... .....|
T Consensus 513 L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~G 590 (987)
T PRK09782 513 RAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPG 590 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC
Confidence 55566667899999999999998665 4445556777888999999999999999887654444443333 333459
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCC-CHhHHHHHHHHHHHcCCHHHHHHH
Q 010405 220 HSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP-ELDHYACMVDLLGRAGLLEEAENF 298 (511)
Q Consensus 220 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 298 (511)
++++|+..+++..+. .|+...+..+..++.+.|+.++|...+.+..+ ..| +...+..+...+...|++++|++.
T Consensus 591 r~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 591 QPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred CHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999875 56788899999999999999999999999987 345 477888999999999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010405 299 IASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKI 373 (511)
Q Consensus 299 ~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 373 (511)
+++. ...| +...+..+..++...|++++|+..++++.+..|++..+.........+..+++.|.+.+++-...++
T Consensus 666 l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 666 LERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 9987 4556 5668889999999999999999999999999999999999999999999999999998877765444
No 26
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.63 E-value=2.3e-13 Score=125.67 Aligned_cols=204 Identities=13% Similarity=0.093 Sum_probs=163.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHH
Q 010405 150 AQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFE 226 (511)
Q Consensus 150 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 226 (511)
...|++++|.+.+++.+...-......|| +.-.+-+.|++++|+..|-++.. .++.....+...|-...+..+|++
T Consensus 501 f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 34578888888888888764333333333 33446778999999999877653 566677777888888899999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC
Q 010405 227 LFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMK 305 (511)
Q Consensus 227 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~ 305 (511)
++.+.... ++-|+.....|...|-+.|+..+|.+.+-.--+ -++.+..+...|..-|....-+++|+..|++. -++
T Consensus 580 ~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq 656 (840)
T KOG2003|consen 580 LLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ 656 (840)
T ss_pred HHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence 99776543 444677888888999999999999987765543 35667888888999999999999999999988 578
Q ss_pred CCHHHHHHHHHH-HHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCC
Q 010405 306 PDNVIWGTLLGA-CRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLK 357 (511)
Q Consensus 306 p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 357 (511)
|+..-|..++.. +++.|++.+|..+++...+..|.+......|++.+...|.
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 999999999877 5788999999999999999999999999999998888775
No 27
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.62 E-value=1.3e-15 Score=142.90 Aligned_cols=256 Identities=16% Similarity=0.151 Sum_probs=111.6
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHCCCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 010405 109 VLISGFAQNGRPKEALALFREMQSLDLEPNS-AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC 187 (511)
Q Consensus 109 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 187 (511)
.+...+.+.|++++|++++++......+|+. .-|..+...+...++.+.|++.++++.+.+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 4567778889999999988655444323444 34444555666788899999999988877533 56667777776 688
Q ss_pred CCHHHHHHHHHhcCC--CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010405 188 GSIDLAMQVFHSYGD--KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG-ISPDSISYIAVLSACSHLGWVEKGFYYFH 264 (511)
Q Consensus 188 g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 264 (511)
+++++|.++++..-+ ++...+..++..+.+.++++++.+++++..... .+++...|..+...+.+.|+.++|...++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999988877643 466677888888999999999999999977543 34567778888888999999999999999
Q ss_pred HchhhcCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC
Q 010405 265 SMFDVHGIKP-ELDHYACMVDLLGRAGLLEEAENFIASM--PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH 341 (511)
Q Consensus 265 ~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 341 (511)
+..+ ..| +......++..+...|+.+++.++++.. ....|+..|..+..++...|+.++|...++++.+..|+|
T Consensus 171 ~al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 171 KALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 9987 345 4778888999999999999988887766 113456678889999999999999999999999999999
Q ss_pred chhHHHHHHHHHHcCCchHHHHHHHHHH
Q 010405 342 DGRYILLSNIYVETLKGENAEEVRKTMR 369 (511)
Q Consensus 342 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 369 (511)
+.....++.++...|+.++|.+++++..
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999987654
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.61 E-value=2.8e-12 Score=128.36 Aligned_cols=312 Identities=14% Similarity=0.116 Sum_probs=207.4
Q ss_pred CChHHHHHHHccCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhC---CCCChhHHHHHHHHHHHCCChhHHHHHHHH
Q 010405 56 GEILEGLKLFDKMPQ---RNDVSWNSILGGLVRFGSVDDACRVFNQM---PKRSLVSWVVLISGFAQNGRPKEALALFRE 129 (511)
Q Consensus 56 g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 129 (511)
|+.++|.+++.+..+ .+...|..|...|-..|+.+++...+-.. ...|...|-.+.....+.|.+++|.-.|.+
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~r 232 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSR 232 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 666666666666654 34456666666666666666666554332 234556666666666666667776666666
Q ss_pred HHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHH----HHHHHHHhcCCHHHHHHHHHhcCC--C
Q 010405 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCA----ALIDMYAKCGSIDLAMQVFHSYGD--K 203 (511)
Q Consensus 130 m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~li~~y~~~g~~~~A~~~~~~~~~--~ 203 (511)
..+.. +++...+---...|-+.|+...|..-|.++.+...+.|..-.. ..+..|...++-+.|.+.++.... .
T Consensus 233 AI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~ 311 (895)
T KOG2076|consen 233 AIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK 311 (895)
T ss_pred HHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence 66653 3444444455556666666666666666666654322222222 223445555555666666665543 1
Q ss_pred ---CeeehHHHHHHHHHcCChHHHHHHHHHHHhCC---------------------------CCCCHHHHHHHHHHHhcc
Q 010405 204 ---DVSAYTSAIFGLAMNGHSIEAFELFENMKSKG---------------------------ISPDSISYIAVLSACSHL 253 (511)
Q Consensus 204 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------------------------~~p~~~t~~~ll~~~~~~ 253 (511)
+...++.++..|....+++.|......+.... +.++...+ .+.-++.+.
T Consensus 312 ~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L 390 (895)
T KOG2076|consen 312 DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLVHL 390 (895)
T ss_pred ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhhhcc
Confidence 33456667777777777777777666665511 22222221 122234455
Q ss_pred CCHHHHHHHHHHchhhcCCCC--CHhHHHHHHHHHHHcCCHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCchhHHH
Q 010405 254 GWVEKGFYYFHSMFDVHGIKP--ELDHYACMVDLLGRAGLLEEAENFIASMP---MKPDNVIWGTLLGACRVHRNAEMGQ 328 (511)
Q Consensus 254 g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~ll~~~~~~g~~~~a~ 328 (511)
...+....+.....+ ..+.| ++..|.-+.++|...|++.+|+++|..+. ...+...|.-+..+|...|..+.|.
T Consensus 391 ~~~e~~e~ll~~l~~-~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 391 KERELLEALLHFLVE-DNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred cccchHHHHHHHHHH-hcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 555555555555554 45334 47789999999999999999999999982 2236779999999999999999999
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 329 RIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 329 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
+.+++++...|++..+-..|...|-+.|+.++|.+++..+..
T Consensus 470 e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~ 511 (895)
T KOG2076|consen 470 EFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIIN 511 (895)
T ss_pred HHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccC
Confidence 999999999999999999999999999999999999988763
No 29
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.60 E-value=1.1e-12 Score=128.92 Aligned_cols=276 Identities=11% Similarity=-0.011 Sum_probs=214.8
Q ss_pred cCChHHHHHHHccCCCC--ChhHHHHH-HHHHHhcCCHHHHHHHHhhCCC--CChhHHH--HHHHHHHHCCChhHHHHHH
Q 010405 55 NGEILEGLKLFDKMPQR--NDVSWNSI-LGGLVRFGSVDDACRVFNQMPK--RSLVSWV--VLISGFAQNGRPKEALALF 127 (511)
Q Consensus 55 ~g~~~~A~~~~~~m~~~--~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~--~~~~~~~--~li~~~~~~g~~~~A~~~~ 127 (511)
.|++++|.+.+....+. ++..+..+ .....+.|+.+.|...|.++.+ |+....- .....+...|++++|++.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 69999999988877653 23333333 3444789999999999999875 3332222 3366888999999999999
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH-------HHHHHHHHHHHhcCCHHHHHHHHHhc
Q 010405 128 REMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDS-------ILCAALIDMYAKCGSIDLAMQVFHSY 200 (511)
Q Consensus 128 ~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~y~~~g~~~~A~~~~~~~ 200 (511)
+++.+.. +-+...+..+...+.+.|+++++.+++..+.+.+..++. .++..++....+..+.+...++++.+
T Consensus 177 ~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~l 255 (398)
T PRK10747 177 DKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQ 255 (398)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 9998865 346778888899999999999999999999987654322 23444555555566778888888887
Q ss_pred CC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHh
Q 010405 201 GD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELD 277 (511)
Q Consensus 201 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 277 (511)
++ .++.....+...+...|+.++|.+++++..+. .|+.... ++.+....++.+++.+..+...+ ..+-|+.
T Consensus 256 p~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk--~~P~~~~ 329 (398)
T PRK10747 256 SRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIK--QHGDTPL 329 (398)
T ss_pred CHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHh--hCCCCHH
Confidence 65 46778888999999999999999999998874 4454222 33444556999999999999887 3344577
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhc
Q 010405 278 HYACMVDLLGRAGLLEEAENFIASM-PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIES 337 (511)
Q Consensus 278 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 337 (511)
.+.++...+.+.|++++|.+.|+.. ...|+...+..+...+...|+.++|.+++++...+
T Consensus 330 l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 330 LWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7889999999999999999999987 67799999999999999999999999999999774
No 30
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=3.8e-13 Score=130.51 Aligned_cols=276 Identities=12% Similarity=0.007 Sum_probs=217.5
Q ss_pred CCHHHHHHHHhhCCC--CCh-hHHHHHHHHHHHCCChhHHHHHHHHHHHCC--CCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 010405 87 GSVDDACRVFNQMPK--RSL-VSWVVLISGFAQNGRPKEALALFREMQSLD--LEPNSAILVSLLSACAQLGALDYGNWV 161 (511)
Q Consensus 87 g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~t~~~ll~~~~~~~~~~~a~~~ 161 (511)
-+..+|...|.+++. +|. .....+..+|...+++++|.++|+...+.. ..-+...|++.+--+-+ +-+..+
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 457889999999764 343 344567889999999999999999997742 11256777777755432 222333
Q ss_pred H-HHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 010405 162 Y-SYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK---DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGIS 237 (511)
Q Consensus 162 ~-~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 237 (511)
+ +.+.+. -+..+.+|-++.+.|.-+++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+..+.. .
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~ 485 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--D 485 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--C
Confidence 3 223333 2556889999999999999999999999998863 5578888888899999999999999987653 3
Q ss_pred CC-HHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 010405 238 PD-SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE-LDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGT 313 (511)
Q Consensus 238 p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 313 (511)
|. -..|..+...|.+.++++.|.-.|+.+.+ +.|. ......+...+-+.|+.++|+++++++ ..+| |+..--.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 33 34566678889999999999999999986 6665 566778888999999999999999998 4444 4444444
Q ss_pred HHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 314 LLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 314 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
-...+...++.++|++.++++.++.|++..+|..++..|.+.|+.+.|..-|.-+.+..
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 55667778999999999999999999999999999999999999999999887776543
No 31
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.57 E-value=6.4e-12 Score=123.49 Aligned_cols=275 Identities=11% Similarity=0.055 Sum_probs=211.5
Q ss_pred cCCHHHHHHHHhhCCCC--Chh-HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHH--HHHHHHHhcCCHHHHHH
Q 010405 86 FGSVDDACRVFNQMPKR--SLV-SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV--SLLSACAQLGALDYGNW 160 (511)
Q Consensus 86 ~g~~~~A~~~~~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~--~ll~~~~~~~~~~~a~~ 160 (511)
.|+++.|++.+...++. ++. .|-.......+.|+++.|.+.|.++.+. .|+..... .....+...|+++.|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 69999999999887653 233 3333344558999999999999999874 55654333 33667889999999999
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCee-----------ehHHHHHHHHHcCChHHHHHHHH
Q 010405 161 VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS-----------AYTSAIFGLAMNGHSIEAFELFE 229 (511)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~-----------~~~~li~~~~~~g~~~~A~~~~~ 229 (511)
.++.+.+.. |-++.+...+...|.+.|++++|.+++..+.+.... +|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999886 557888999999999999999999999988763222 23333444444555666667777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-
Q 010405 230 NMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKPD- 307 (511)
Q Consensus 230 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~- 307 (511)
...+. .+.+......+..++...|+.++|..++....+ .+|+.... ++.+....++.+++.+.++.. ...|+
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 66443 344677888899999999999999999998876 34554222 333344569999999999887 45564
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 308 NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 308 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
+....++...|...+++++|.+.|+++.+..|++ ..+..|+.++.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4467778888999999999999999999999975 6788999999999999999999986643
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=4.8e-11 Score=109.98 Aligned_cols=334 Identities=14% Similarity=0.090 Sum_probs=239.2
Q ss_pred hcCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC----CChhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCChhH
Q 010405 35 DESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ----RNDVSWNSILGGLVRFGSVDDACRVFNQMP----KRSLVS 106 (511)
Q Consensus 35 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~ 106 (511)
-+..+....+|.+||.++++-...+.|.++|++... -+..+||.+|.+-+-..+ .++..+|. .||..|
T Consensus 200 ~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~T 275 (625)
T KOG4422|consen 200 FETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFT 275 (625)
T ss_pred HhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHh
Confidence 344455678899999999999999999999998875 467788888876543333 45555554 589999
Q ss_pred HHHHHHHHHHCCChhH----HHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHH-HHHHHHHHHH----cCC----Ccc
Q 010405 107 WVVLISGFAQNGRPKE----ALALFREMQSLDLEPNSAILVSLLSACAQLGALDY-GNWVYSYIQK----KCI----KLD 173 (511)
Q Consensus 107 ~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~----~~~----~~~ 173 (511)
+|+++++..+.|+++. |++++.+|++.|+.|...+|..+|..+.+.++..+ +..+..++.. .-+ +.|
T Consensus 276 fNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d 355 (625)
T KOG4422|consen 276 FNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTD 355 (625)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCch
Confidence 9999999999998876 46788899999999999999999999998888754 3444444433 112 335
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----------CeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHH
Q 010405 174 SILCAALIDMYAKCGSIDLAMQVFHSYGDK-----------DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSIS 242 (511)
Q Consensus 174 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 242 (511)
...+..-++.|....+.+-|.++-.-.... ...-|..+....++....+.-+.+|..|.-.-.-|+..+
T Consensus 356 ~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~ 435 (625)
T KOG4422|consen 356 NKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQT 435 (625)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchh
Confidence 566777888888999999998887655431 123466777888889999999999999988778899999
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcC-C--------HHH-----HHHHHH-------h
Q 010405 243 YIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAG-L--------LEE-----AENFIA-------S 301 (511)
Q Consensus 243 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~--------~~~-----A~~~~~-------~ 301 (511)
...+++|....|.++-..+++..+.. +|-.-+.....-+...+++.. + +.. |..+++ +
T Consensus 436 m~~~lrA~~v~~~~e~ipRiw~D~~~-~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R 514 (625)
T KOG4422|consen 436 MIHLLRALDVANRLEVIPRIWKDSKE-YGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIR 514 (625)
T ss_pred HHHHHHHHhhcCcchhHHHHHHHHHH-hhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 99999999999999998888888887 665444444444444444433 1 111 111111 1
Q ss_pred C-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhc---CCCCc--hhHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010405 302 M-PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIES---DQNHD--GRYILLSNIYVETLKGENAEEVRKTMRKRKI 373 (511)
Q Consensus 302 ~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 373 (511)
+ ..+......+.++-.+.+.|..++|-+++..+.+. -|..+ .+..-|.+.-........|..+++-|...+.
T Consensus 515 ~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 515 QRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred HHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 1 12234455666667778899999999999888652 23332 2233555556667788889999988876554
No 33
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.55 E-value=7.8e-12 Score=126.07 Aligned_cols=360 Identities=11% Similarity=0.086 Sum_probs=264.1
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCC------hhHHHHHHHHHHHcCChHHHHHHHccCCC--CCh--hHHH
Q 010405 8 AYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLD------VVSWNSMINGYVRNGEILEGLKLFDKMPQ--RND--VSWN 77 (511)
Q Consensus 8 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~--~~~~ 77 (511)
..|+++.+.|.+.|.-.|++..+..+...+...+ ..+|--+.++|-..|++++|...|.+..+ +|. ..+-
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~ 346 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV 346 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc
Confidence 3578899999999999999999999887665322 34688899999999999999999988876 333 3455
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHCC----ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 010405 78 SILGGLVRFGSVDDACRVFNQMPK--R-SLVSWVVLISGFAQNG----RPKEALALFREMQSLDLEPNSAILVSLLSACA 150 (511)
Q Consensus 78 ~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 150 (511)
.|..+|.+.|+++.|...|++..+ | +..+-..|...|+..+ ..++|..++.+....- +.|...|..+...+.
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e 425 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLE 425 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHH
Confidence 678999999999999999999864 3 4567777777787775 4567777777766653 457778887777765
Q ss_pred hcCCHHHHHHHHHHH----HHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC-------CCee------ehHHHHH
Q 010405 151 QLGALDYGNWVYSYI----QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD-------KDVS------AYTSAIF 213 (511)
Q Consensus 151 ~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~~~~------~~~~li~ 213 (511)
...-+ .+..++..+ ...+-++.+...|.+...+...|++++|...|..... +|.. +--.+..
T Consensus 426 ~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlar 504 (1018)
T KOG2002|consen 426 QTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLAR 504 (1018)
T ss_pred hcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHH
Confidence 54433 336555544 3456567888999999999999999999999987653 2221 1223444
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCH
Q 010405 214 GLAMNGHSIEAFELFENMKSKGISPDS-ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLL 292 (511)
Q Consensus 214 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 292 (511)
.+-..++.+.|.+.|..+... .|+- ..|..++......+...+|..+++.... ....++..++.+...+.+...+
T Consensus 505 l~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~ 580 (1018)
T KOG2002|consen 505 LLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEW 580 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhh
Confidence 555677889999999998875 4543 3455555444456788899999988886 3444555666777788888888
Q ss_pred HHHHHHHHhC----CCCCCHHHHHHHHHHHH------------hcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcC
Q 010405 293 EEAENFIASM----PMKPDNVIWGTLLGACR------------VHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETL 356 (511)
Q Consensus 293 ~~A~~~~~~~----~~~p~~~~~~~ll~~~~------------~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 356 (511)
..|.+-|+.+ ...+|..+.-+|.+.|. ..+..++|+++|.++++.+|.|..+-+.++-+++..|
T Consensus 581 ~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg 660 (1018)
T KOG2002|consen 581 KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKG 660 (1018)
T ss_pred cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhcc
Confidence 8887755544 23356666656655442 2334678888888888888888777778888888999
Q ss_pred CchHHHHHHHHHHhCCC
Q 010405 357 KGENAEEVRKTMRKRKI 373 (511)
Q Consensus 357 ~~~~A~~~~~~m~~~g~ 373 (511)
++.+|..+|.+.++...
T Consensus 661 ~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 661 RFSEARDIFSQVREATS 677 (1018)
T ss_pred CchHHHHHHHHHHHHHh
Confidence 99999999988887654
No 34
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=6.9e-11 Score=110.09 Aligned_cols=326 Identities=11% Similarity=0.048 Sum_probs=236.1
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHccCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh-hHHHHHHHHHHHCCC
Q 010405 41 DVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSL-VSWVVLISGFAQNGR 119 (511)
Q Consensus 41 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~g~ 119 (511)
|...+-...-.+.+.|....|+..|......-+..|.+-+....-..+.+.+..+-..++..+. ..=--+..+|....+
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q 242 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQ 242 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHH
Confidence 4333333334455666677777777766655555666665555555555555555544443221 111224456666668
Q ss_pred hhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CccHHHHHHHHHHHHhcCCHHH-HHHH
Q 010405 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCI--KLDSILCAALIDMYAKCGSIDL-AMQV 196 (511)
Q Consensus 120 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~y~~~g~~~~-A~~~ 196 (511)
.+++++-.+.....|++.+...-+....+.-...++++|+.+|+.+.+... -.|..+|..++-.-..+.++.- |..+
T Consensus 243 ~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v 322 (559)
T KOG1155|consen 243 HEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNV 322 (559)
T ss_pred HHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHH
Confidence 888888888888888766665555556666778899999999999988731 1245666665533222222221 2222
Q ss_pred HHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCH
Q 010405 197 FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPEL 276 (511)
Q Consensus 197 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~ 276 (511)
+ .+.+--+.|...+..-|.-.++.++|+..|++.++.+.+ ....|+.+..-|....+...|++-++.+.+ --+.|-
T Consensus 323 ~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~Dy 398 (559)
T KOG1155|consen 323 S-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDY 398 (559)
T ss_pred H-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhH
Confidence 2 233334556677788888999999999999999886422 456788888889999999999999999987 223467
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q 010405 277 DHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVE 354 (511)
Q Consensus 277 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 354 (511)
..|-.|.++|.-.+...-|+-.|++. ..+| |...|.+|...|.+.++.++|++.|+++......+...+..|+++|-+
T Consensus 399 RAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~ 478 (559)
T KOG1155|consen 399 RAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEE 478 (559)
T ss_pred HHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 88999999999999999999999998 5666 788999999999999999999999999999777778999999999999
Q ss_pred cCCchHHHHHHHHHHh
Q 010405 355 TLKGENAEEVRKTMRK 370 (511)
Q Consensus 355 ~g~~~~A~~~~~~m~~ 370 (511)
.++.++|...+++-.+
T Consensus 479 l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 479 LKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHhHHHHHHHHHHHHH
Confidence 9999999999987765
No 35
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.53 E-value=3.5e-11 Score=118.96 Aligned_cols=280 Identities=11% Similarity=-0.022 Sum_probs=146.6
Q ss_pred HcCChHHHHHHHccCCC--CCh-hHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCh--hHHHHHHHHHHHCCChhHHHHH
Q 010405 54 RNGEILEGLKLFDKMPQ--RND-VSWNSILGGLVRFGSVDDACRVFNQMPK--RSL--VSWVVLISGFAQNGRPKEALAL 126 (511)
Q Consensus 54 ~~g~~~~A~~~~~~m~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~li~~~~~~g~~~~A~~~ 126 (511)
..|+++.|.+.+.+..+ |+. ..+-....++.+.|+.+.|...|.+..+ |+. ...-.....+.+.|++++|++.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 46777777777766554 322 2223334556666777777777766432 222 2333346666677777777777
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH---H----hcCCHHHHHHHHHh
Q 010405 127 FREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMY---A----KCGSIDLAMQVFHS 199 (511)
Q Consensus 127 ~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y---~----~~g~~~~A~~~~~~ 199 (511)
++.+.+.. +-+...+..+...+...|+++.+.+.+..+.+.+..+.......-..++ . .....+...+.++.
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 77776653 2245566667777777777777777777777765432222211111111 1 11222333344444
Q ss_pred cCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHH--H-HHHHHHHhccCCHHHHHHHHHHchhhcCCC
Q 010405 200 YGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSIS--Y-IAVLSACSHLGWVEKGFYYFHSMFDVHGIK 273 (511)
Q Consensus 200 ~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 273 (511)
.++ .+...+..+...+...|+.++|.+++++..+.. ||... + ..........++.+.+.+.++...+...-.
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~ 332 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDK 332 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCC
Confidence 432 255556666666666666666666666666542 22221 1 111111223355555555555555421111
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhh
Q 010405 274 PELDHYACMVDLLGRAGLLEEAENFIAS--M-PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIE 336 (511)
Q Consensus 274 p~~~~~~~li~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (511)
|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++...
T Consensus 333 ~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 333 PKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1113444555566666666666666662 2 3445555555555556666666666666665544
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.53 E-value=9.7e-14 Score=130.28 Aligned_cols=250 Identities=16% Similarity=0.149 Sum_probs=106.0
Q ss_pred HHHHHHHhcCChHHHHHHHhc-CC----CCChhHHHHHHHHHHHcCChHHHHHHHccCCCC---ChhHHHHHHHHHHhcC
Q 010405 16 SLIQFYSVCGRVRDARWVFDE-SD----DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQR---NDVSWNSILGGLVRFG 87 (511)
Q Consensus 16 ~li~~~~~~g~~~~A~~~f~~-~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g 87 (511)
.+...+.+.|++++|++++++ .. +.|+.-|..+.......++++.|++.++++... ++..+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 567888899999999999953 22 335666777777788899999999999999863 34456667766 6889
Q ss_pred CHHHHHHHHhhCCC--CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCC-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 010405 88 SVDDACRVFNQMPK--RSLVSWVVLISGFAQNGRPKEALALFREMQSLD-LEPNSAILVSLLSACAQLGALDYGNWVYSY 164 (511)
Q Consensus 88 ~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 164 (511)
++++|.+++++.-+ ++...+..++..+.+.++++++.++++.+.... .+++...|..+...+.+.|+.++|...+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999998877643 466778888889999999999999999877543 345777788888889999999999999999
Q ss_pred HHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH
Q 010405 165 IQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG---DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241 (511)
Q Consensus 165 ~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 241 (511)
+++.. |.|..+.+.++..+...|+.+++.++++... ..|...|..+..+|...|+.++|+.+|++..... +.|..
T Consensus 172 al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~ 249 (280)
T PF13429_consen 172 ALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPL 249 (280)
T ss_dssp HHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HH
T ss_pred HHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-ccccc
Confidence 99874 4467788889999999999998777776554 3567778888899999999999999999887742 33677
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHchh
Q 010405 242 SYIAVLSACSHLGWVEKGFYYFHSMFD 268 (511)
Q Consensus 242 t~~~ll~~~~~~g~~~~a~~~~~~~~~ 268 (511)
....+..++...|+.++|.++..++.+
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 777888888899999999888777654
No 37
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.51 E-value=1.2e-11 Score=124.84 Aligned_cols=356 Identities=15% Similarity=0.073 Sum_probs=215.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCC--CC--hhHHHHHHHHHHHcCChHHHHHHHccCCC--C-ChhHHHHHHHHHHhc
Q 010405 14 KNSLIQFYSVCGRVRDARWVFDESDD--LD--VVSWNSMINGYVRNGEILEGLKLFDKMPQ--R-NDVSWNSILGGLVRF 86 (511)
Q Consensus 14 ~~~li~~~~~~g~~~~A~~~f~~~~~--~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~ 86 (511)
|=.+.++|-..|++++|...|.+..+ +| +..+--+...+.+.|+.+.+...|+...+ | +..+...|...|+..
T Consensus 310 ~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~ 389 (1018)
T KOG2002|consen 310 FYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHS 389 (1018)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhh
Confidence 44455666666666666666654331 11 23344455556666666666666665543 2 233333344444433
Q ss_pred C----CHHHHHHHHhhCCC-----------------------------------------CChhHHHHHHHHHHHCCChh
Q 010405 87 G----SVDDACRVFNQMPK-----------------------------------------RSLVSWVVLISGFAQNGRPK 121 (511)
Q Consensus 87 g----~~~~A~~~~~~~~~-----------------------------------------~~~~~~~~li~~~~~~g~~~ 121 (511)
+ ..+.|..+..+..+ ..+...|.+...+...|++.
T Consensus 390 ~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~ 469 (1018)
T KOG2002|consen 390 AKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIE 469 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChH
Confidence 2 23334433333322 23344455555555555555
Q ss_pred HHHHHHHHHHHC---CCCCCH------hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 010405 122 EALALFREMQSL---DLEPNS------AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDL 192 (511)
Q Consensus 122 ~A~~~~~~m~~~---~~~p~~------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 192 (511)
+|...|...... ...+|. .+-..+....-..++.+.|.+.|..+.+.. |.-+..|--|+-+....+...+
T Consensus 470 ~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~e 548 (1018)
T KOG2002|consen 470 KALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYE 548 (1018)
T ss_pred HHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHH
Confidence 555555554432 111222 122233344444455555555555555542 2122223223322233355666
Q ss_pred HHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhc------------cCCH
Q 010405 193 AMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSK-GISPDSISYIAVLSACSH------------LGWV 256 (511)
Q Consensus 193 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~------------~g~~ 256 (511)
|...+..... .++..|..+...+.....+..|.+-|...... ...+|..+..+|...|.. .+..
T Consensus 549 a~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~ 628 (1018)
T KOG2002|consen 549 ASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQ 628 (1018)
T ss_pred HHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHH
Confidence 6666666543 46666777777788888887787766666543 223566666667665543 2456
Q ss_pred HHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 010405 257 EKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP--MKPDNVIWGTLLGACRVHRNAEMGQRIGNML 334 (511)
Q Consensus 257 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 334 (511)
+.|+++|.+..+ .-+-|...-+-+.-.++..|++.+|.++|.+.. ...+..+|-.+...|...|++..|+++|+..
T Consensus 629 ~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~ 706 (1018)
T KOG2002|consen 629 EKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENC 706 (1018)
T ss_pred HHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888876 334567777888889999999999999998872 2235567999999999999999999999999
Q ss_pred hh--cCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 335 IE--SDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 335 ~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
.+ ...+++.+...|+.++.+.|++.+|.+.+.......
T Consensus 707 lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 707 LKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 88 334567788899999999999999999887666543
No 38
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.50 E-value=2.5e-11 Score=120.04 Aligned_cols=276 Identities=13% Similarity=0.024 Sum_probs=202.7
Q ss_pred hcCChHHHHHHHhcCCC--CC-hhHHHHHHHHHHHcCChHHHHHHHccCCC--CChh--HHHHHHHHHHhcCCHHHHHHH
Q 010405 23 VCGRVRDARWVFDESDD--LD-VVSWNSMINGYVRNGEILEGLKLFDKMPQ--RNDV--SWNSILGGLVRFGSVDDACRV 95 (511)
Q Consensus 23 ~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~--~~~~li~~~~~~g~~~~A~~~ 95 (511)
..|+++.|.+.+.+..+ |+ ...+-....++.+.|+++.|.+.|.+..+ |+.. ..-.....+...|+++.|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 46999999999987653 33 23344455678889999999999998754 4443 344457888999999999999
Q ss_pred HhhCCC--C-ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHH-HHHHHH---HhcCCHHHHHHHHHHHHHc
Q 010405 96 FNQMPK--R-SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV-SLLSAC---AQLGALDYGNWVYSYIQKK 168 (511)
Q Consensus 96 ~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~-~ll~~~---~~~~~~~~a~~~~~~~~~~ 168 (511)
++.+.+ | +...+..+...+.+.|++++|.+++..+.+.++. +...+. .-..++ ...+..+.+.+.+..+.+.
T Consensus 176 l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 176 VDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 999875 3 5678889999999999999999999999998754 333332 111222 2222333334455555444
Q ss_pred CC---CccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCeee---hHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH
Q 010405 169 CI---KLDSILCAALIDMYAKCGSIDLAMQVFHSYGD--KDVSA---YTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240 (511)
Q Consensus 169 ~~---~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 240 (511)
.. +.+...+..+...+...|+.++|.+++++..+ ||... ...........++.+.+++.+++..+. .|+.
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~ 332 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDK 332 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCC
Confidence 21 23788999999999999999999999998876 44332 122222334457788899999888764 4444
Q ss_pred ---HHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 010405 241 ---ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM 302 (511)
Q Consensus 241 ---~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 302 (511)
....++...|.+.|++++|.+.|+.... ....|+...+..+...+.+.|+.++|.+++++.
T Consensus 333 ~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a-~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 333 PKCCINRALGQLLMKHGEFIEAADAFKNVAA-CKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHhHH-hhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4556788899999999999999995433 346799888999999999999999999999874
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=2.8e-12 Score=124.53 Aligned_cols=277 Identities=13% Similarity=0.074 Sum_probs=219.8
Q ss_pred CChHHHHHHHccCCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC------CChhHHHHHHHHHHHCCChhHHHHH
Q 010405 56 GEILEGLKLFDKMPQ--R-NDVSWNSILGGLVRFGSVDDACRVFNQMPK------RSLVSWVVLISGFAQNGRPKEALAL 126 (511)
Q Consensus 56 g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~ 126 (511)
-+.++|+.+|.+.+. + ...+...+..+|...+++++|+++|+.+.+ .+...|.+.+..+-+ +-++..
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 345889999998654 2 346667788999999999999999999874 367788888876543 223333
Q ss_pred H-HHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCe
Q 010405 127 F-REMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205 (511)
Q Consensus 127 ~-~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~ 205 (511)
+ +.+... -+-.+.||-.+.++|.-+++.+.|++.|+++++.. +....+|+.+..-+.....+|.|...|+.....|.
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 3 233332 24567899999999999999999999999999864 33788999999999999999999999999988777
Q ss_pred eehHH---HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCC-CHhHHHH
Q 010405 206 SAYTS---AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP-ELDHYAC 281 (511)
Q Consensus 206 ~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 281 (511)
.-||+ +...|.+.++++.|+-.|++..+.+.. +.+....+...+-+.|+.|+|+++++++.. +.| |+-.--.
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~---ld~kn~l~~~~ 562 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIH---LDPKNPLCKYH 562 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHh---cCCCCchhHHH
Confidence 66555 577899999999999999998875422 566677778888999999999999999976 333 3444445
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCc
Q 010405 282 MVDLLGRAGLLEEAENFIASM-PMKPDNV-IWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD 342 (511)
Q Consensus 282 li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 342 (511)
.+..+...+++++|+..++++ .+.|+.. .+..+...|.+.|+.+.|+.-|..+.+++|.-.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 566778899999999999998 4567655 566666779999999999999999999999643
No 40
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.49 E-value=3e-10 Score=110.02 Aligned_cols=362 Identities=11% Similarity=0.050 Sum_probs=292.6
Q ss_pred chHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHccCCC---CChhHHHHHHHHHHh
Q 010405 12 FVKNSLIQFYSVCGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ---RNDVSWNSILGGLVR 85 (511)
Q Consensus 12 ~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~ 85 (511)
.+|+.-...|.+.+.++-|+.+|.... +.+...|...+..=-..|..++-..+|++... .....|-.....+-.
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~ 596 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWK 596 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHh
Confidence 456666777778888888888887544 45667788887777778888888888888764 345566666677778
Q ss_pred cCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 010405 86 FGSVDDACRVFNQMPK---RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVY 162 (511)
Q Consensus 86 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 162 (511)
.|++..|+.++.+..+ .+...|-+-+..-..+.++++|..+|.+... ..|+...|.--++.---.++.++|.+++
T Consensus 597 agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rll 674 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLL 674 (913)
T ss_pred cCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHH
Confidence 8999999999888754 3557899999999999999999999998876 4677777777777777789999999999
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC
Q 010405 163 SYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD--K-DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239 (511)
Q Consensus 163 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 239 (511)
+..++. ++.-...|-.+...+-+.++++.|.+.|..-.+ | .+..|-.+...=-+.|+.-.|..++++.+-.+.+ |
T Consensus 675 Ee~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~ 752 (913)
T KOG0495|consen 675 EEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-N 752 (913)
T ss_pred HHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-c
Confidence 999887 455567888999999999999999999987665 4 4455777777777788999999999998877544 7
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010405 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACR 319 (511)
Q Consensus 240 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~ 319 (511)
...|...++.=.+.|+.++|..+..+..+ ..+.+...|..-|.+..+.++-....+.+++-. .|+...-++...+.
T Consensus 753 ~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw 828 (913)
T KOG0495|consen 753 ALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFW 828 (913)
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHH
Confidence 88899999999999999999999999887 456667788888888888888777777777654 35555666777788
Q ss_pred hcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEE
Q 010405 320 VHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE 383 (511)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ 383 (511)
....++.|.+.|.++++.+|++..+|..+...+...|.-++-.++++...... |..|..|..
T Consensus 829 ~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~a 890 (913)
T KOG0495|consen 829 SEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQA 890 (913)
T ss_pred HHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHH
Confidence 88899999999999999999999999999999999999999999998776533 445556643
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=3.3e-10 Score=105.62 Aligned_cols=353 Identities=12% Similarity=0.062 Sum_probs=245.6
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCChh-HHHHHHHHHHhc
Q 010405 8 AYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDV-SWNSILGGLVRF 86 (511)
Q Consensus 8 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~li~~~~~~ 86 (511)
.-|++.+=...-.+-+.|....|++.|-.....-+..|.+-+....-.-+.+.+..+-......+.. .=--+..+|-..
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 3444444444455667788899999998766443444444333322223333333333333322111 112234556666
Q ss_pred CCHHHHHHHHhhCCC---CC-hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCC--CCCHhHHHHHHHHHHhcCCHHHHHH
Q 010405 87 GSVDDACRVFNQMPK---RS-LVSWVVLISGFAQNGRPKEALALFREMQSLDL--EPNSAILVSLLSACAQLGALDYGNW 160 (511)
Q Consensus 87 g~~~~A~~~~~~~~~---~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~t~~~ll~~~~~~~~~~~a~~ 160 (511)
.+.+++..-.+.... ++ ...-+....+.-...++++|+.+|+++.+.+. --|..+|+.++-+-.....+.
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs---- 316 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLS---- 316 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHH----
Confidence 677777766655543 22 22333344455677899999999999988731 126678888875543322221
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 010405 161 VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK---DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGIS 237 (511)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 237 (511)
++.+-.-.=-.-.+.|+..+.+-|+-.++.++|...|++..+- ...+|+.|..-|....+...|++-++...+.. +
T Consensus 317 ~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p 395 (559)
T KOG1155|consen 317 YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-P 395 (559)
T ss_pred HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-c
Confidence 1111111101223557788899999999999999999998763 45679999999999999999999999998864 3
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHH
Q 010405 238 PDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP-ELDHYACMVDLLGRAGLLEEAENFIASM--PMKPDNVIWGTL 314 (511)
Q Consensus 238 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l 314 (511)
-|-..|-.|.++|.-.+...-|+-+|++..+ ..| |...|.+|.+.|.+.+++++|++-|.+. .-+.+...+..|
T Consensus 396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~L 472 (559)
T KOG1155|consen 396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRL 472 (559)
T ss_pred hhHHHHhhhhHHHHHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHH
Confidence 3778999999999999999999999999986 455 6899999999999999999999999987 223355788999
Q ss_pred HHHHHhcCchhHHHHHHHHHhh-------cCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 010405 315 LGACRVHRNAEMGQRIGNMLIE-------SDQNHDGRYILLSNIYVETLKGENAEEVRKTM 368 (511)
Q Consensus 315 l~~~~~~g~~~~a~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 368 (511)
...+-+.++.++|.+.+++-++ ..|....+..-|+.-+.+.+++++|.......
T Consensus 473 akLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 473 AKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 9999999999999999999887 23322334446888899999999998866544
No 42
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=1.8e-10 Score=107.53 Aligned_cols=353 Identities=12% Similarity=0.117 Sum_probs=234.7
Q ss_pred cCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHccCCC--CC-hhHHHHHHHHHHhcCCHHHHHHHHh
Q 010405 24 CGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ--RN-DVSWNSILGGLVRFGSVDDACRVFN 97 (511)
Q Consensus 24 ~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~ 97 (511)
++++..|+.+|++.. .++...|---+..=.++..+..|..++++... |- ...|-..+-+=-..|++..|.++|+
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqife 165 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFE 165 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 355666777777544 34566676667776777777777777766643 21 1234444444455667777777776
Q ss_pred hCC--CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CC-Ccc
Q 010405 98 QMP--KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKK-CI-KLD 173 (511)
Q Consensus 98 ~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~-~~~ 173 (511)
+-. +|+..+|++.|..=.+....+.|..+|++..- +.|+..+|.-....=.+.|+...+..+++.+++. |- ..+
T Consensus 166 rW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~ 243 (677)
T KOG1915|consen 166 RWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEA 243 (677)
T ss_pred HHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHH
Confidence 644 46666777777776677777777777766654 3466666666666666666666666666666553 10 011
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhc--------------------------------------------CCC---Cee
Q 010405 174 SILCAALIDMYAKCGSIDLAMQVFHSY--------------------------------------------GDK---DVS 206 (511)
Q Consensus 174 ~~~~~~li~~y~~~g~~~~A~~~~~~~--------------------------------------------~~~---~~~ 206 (511)
...+.+....-.++..++.|.-+|+-. ... |-.
T Consensus 244 e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYD 323 (677)
T KOG1915|consen 244 EILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYD 323 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCch
Confidence 223333333333344444444443321 112 334
Q ss_pred ehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHH---hccCCHHHHHHHHHHchhhcCCCCCH
Q 010405 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI-------SYIAVLSAC---SHLGWVEKGFYYFHSMFDVHGIKPEL 276 (511)
Q Consensus 207 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~~~---~~~g~~~~a~~~~~~~~~~~~~~p~~ 276 (511)
+|--.+..--..|+.+...++|++.... ++|-.. .|.-+=.+| ....+++.+.++|+...+ -++...
T Consensus 324 sWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPHkk 400 (677)
T KOG1915|consen 324 SWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIPHKK 400 (677)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCccc
Confidence 5666666666779999999999998765 555321 222221222 346888999999999887 344456
Q ss_pred hHHHHHHHHH----HHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHH
Q 010405 277 DHYACMVDLL----GRAGLLEEAENFIASM-PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNI 351 (511)
Q Consensus 277 ~~~~~li~~~----~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 351 (511)
.|+.-+--+| .++.++..|.+++... |.-|...++...|..-.+.++++....++++.++..|.+..+|...+..
T Consensus 401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaEl 480 (677)
T KOG1915|consen 401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAEL 480 (677)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHH
Confidence 6666555444 4788999999999776 8889999999999999999999999999999999999999999999999
Q ss_pred HHHcCCchHHHHHHHHHHhCCCccCCceeE
Q 010405 352 YVETLKGENAEEVRKTMRKRKIKRAPGCSL 381 (511)
Q Consensus 352 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 381 (511)
-...|++|.|..+|+..........|..-|
T Consensus 481 E~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 481 ETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred HHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 999999999999999888766544455444
No 43
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=1.1e-10 Score=109.49 Aligned_cols=349 Identities=14% Similarity=0.067 Sum_probs=237.6
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCC--CCC-hhHHHHHHHHHHHcCChHHHHHHHccCCCCChh---HHHHHHHHHHhcCC
Q 010405 15 NSLIQFYSVCGRVRDARWVFDESD--DLD-VVSWNSMINGYVRNGEILEGLKLFDKMPQRNDV---SWNSILGGLVRFGS 88 (511)
Q Consensus 15 ~~li~~~~~~g~~~~A~~~f~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~~g~ 88 (511)
....+-|.+.|++++|++.+.+.. .|| ++-|.....+|...|++++..+.-.+..+-++. .+.--.+++-..|+
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~ 198 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGK 198 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhcc
Confidence 344566778899999999999765 567 788999999999999999988877776653322 12222223333333
Q ss_pred HHHHH----------------------HHHhhC---------C---C---CChhHHHHHHHHHHH---------------
Q 010405 89 VDDAC----------------------RVFNQM---------P---K---RSLVSWVVLISGFAQ--------------- 116 (511)
Q Consensus 89 ~~~A~----------------------~~~~~~---------~---~---~~~~~~~~li~~~~~--------------- 116 (511)
+++|+ +++.+. . . |+....++....|..
T Consensus 199 ~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa 278 (606)
T KOG0547|consen 199 FDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDA 278 (606)
T ss_pred HHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchh
Confidence 33322 222211 1 1 122112222111110
Q ss_pred ----------CC---ChhHHHHHHHHHHH---CCCCCC---------HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 010405 117 ----------NG---RPKEALALFREMQS---LDLEPN---------SAILVSLLSACAQLGALDYGNWVYSYIQKKCIK 171 (511)
Q Consensus 117 ----------~g---~~~~A~~~~~~m~~---~~~~p~---------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 171 (511)
.+ .+.+|.+.+.+-.. .....+ ..+......-+.-.|+.-.+.+-|+..++....
T Consensus 279 ~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~ 358 (606)
T KOG0547|consen 279 ALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPA 358 (606)
T ss_pred hHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcc
Confidence 01 12222222211100 001111 112222222234567888899999999887533
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHHH
Q 010405 172 LDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISP-DSISYIAVL 247 (511)
Q Consensus 172 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll 247 (511)
+...|--+..+|....+.++..+.|+...+ .|..+|..-...+.-.+++++|..-|++.+.. .| +...|.-+-
T Consensus 359 -~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~~~iQl~ 435 (606)
T KOG0547|consen 359 -FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAYAYIQLC 435 (606)
T ss_pred -cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhHHHHHHH
Confidence 344477778889999999999999998765 46778888888888899999999999998874 44 455677776
Q ss_pred HHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---------HHHHHHHHHH
Q 010405 248 SACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKPD---------NVIWGTLLGA 317 (511)
Q Consensus 248 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---------~~~~~~ll~~ 317 (511)
.+..+.+.++++...|++.++ .++.-+++|+.....+..++++++|.+.|+.. .+.|+ +.+-.+++-.
T Consensus 436 ~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~ 513 (606)
T KOG0547|consen 436 CALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL 513 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhh
Confidence 677788999999999999998 56667889999999999999999999999876 44443 2222233322
Q ss_pred HHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 010405 318 CRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMR 369 (511)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 369 (511)
-. .+++..|+.+++++.+++|....+|..|+..-.+.|+.++|+++|++-.
T Consensus 514 qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 514 QW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 22 3899999999999999999999999999999999999999999998654
No 44
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.46 E-value=5.6e-10 Score=103.07 Aligned_cols=325 Identities=17% Similarity=0.195 Sum_probs=232.7
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhcCC----CCChhHHHHHHHHHHHcCChHHHHHHHccCC----CCChhHHHHH
Q 010405 8 AYDVFVKNSLIQFYSVCGRVRDARWVFDESD----DLDVVSWNSMINGYVRNGEILEGLKLFDKMP----QRNDVSWNSI 79 (511)
Q Consensus 8 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~l 79 (511)
+-...++..+|.+.+|.-..+.|++++.+-. +-+..++|.+|.+-.-... .++..+|. .||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHH
Confidence 3456889999999999999999999998765 4578899999977544333 45555553 5999999999
Q ss_pred HHHHHhcCCHHHHHHHHh----hCC----CCChhHHHHHHHHHHHCCChhH-HHHHHHHHHHC----CCC---C-CHhHH
Q 010405 80 LGGLVRFGSVDDACRVFN----QMP----KRSLVSWVVLISGFAQNGRPKE-ALALFREMQSL----DLE---P-NSAIL 142 (511)
Q Consensus 80 i~~~~~~g~~~~A~~~~~----~~~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~----~~~---p-~~~t~ 142 (511)
+++.++.|+++.|++.+- +|. +|...+|..+|..+.+.+++.+ |..+..+.+.. .++ | |..-|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999999988776554 443 5888999999999999988865 44455555432 222 2 45667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC----CCcc---HHHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCeeehHHH
Q 010405 143 VSLLSACAQLGALDYGNWVYSYIQKKC----IKLD---SILCAALIDMYAKCGSIDLAMQVFHSYGD----KDVSAYTSA 211 (511)
Q Consensus 143 ~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~l 211 (511)
...+..|.+..+.+.|.+++..+.... ++|+ ...|..+..+.+....++.-...|+.|.. |+..+-..+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 888999999999999999988776432 2333 34567788888889999999999998875 566666777
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-CH--------H-----HHHHHH-------HHchhhc
Q 010405 212 IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG-WV--------E-----KGFYYF-------HSMFDVH 270 (511)
Q Consensus 212 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~--------~-----~a~~~~-------~~~~~~~ 270 (511)
+.+....|.++-.-+++..++..|..-+...-.-++.-+++.. .. . -|..++ .++.
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r--- 516 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQR--- 516 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH---
Confidence 8888888888888888888887775544444444444444332 10 0 011111 1222
Q ss_pred CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCC
Q 010405 271 GIKPELDHYACMVDLLGRAGLLEEAENFIASM-------PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQ 339 (511)
Q Consensus 271 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 339 (511)
.........++..-.+.|.|+.++|.+++.-+ +..|..-...-++......+++..|..+++-+...+-
T Consensus 517 ~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 517 AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 23344557888899999999999999988655 3334444444566677788889999999988876443
No 45
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=9.1e-11 Score=104.50 Aligned_cols=259 Identities=15% Similarity=0.126 Sum_probs=166.3
Q ss_pred cCChHHHHHHHccCCCCChhHH---HHHHHHHHhcCCHHHHHHHHhhCCC-CCh------hHHHHHHHHHHHCCChhHHH
Q 010405 55 NGEILEGLKLFDKMPQRNDVSW---NSILGGLVRFGSVDDACRVFNQMPK-RSL------VSWVVLISGFAQNGRPKEAL 124 (511)
Q Consensus 55 ~g~~~~A~~~~~~m~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~-~~~------~~~~~li~~~~~~g~~~~A~ 124 (511)
+.+.++|.++|-+|.+-|..++ -+|.+.|-+.|..|.|.++...+.+ ||. .+.-.|..-|...|-++.|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 5678889999988887665554 4677888888999999998888754 443 24456777788888999999
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 010405 125 ALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD----SILCAALIDMYAKCGSIDLAMQVFHSY 200 (511)
Q Consensus 125 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~y~~~g~~~~A~~~~~~~ 200 (511)
++|..+.+.+ .--..+...|+..|-...+|++|+.+-.++.+.+-.+. ...|--|...+....+.+.|...+.+.
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 9998887754 23455677888888888888888888888887764433 223444555555566677777777665
Q ss_pred CCC---CeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHh
Q 010405 201 GDK---DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELD 277 (511)
Q Consensus 201 ~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 277 (511)
.+. .+.+--.+...+...|+++.|++.++...+.+..--..+...|..+|.+.|+.+++..++..+.+ ..+...
T Consensus 207 lqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~---~~~g~~ 283 (389)
T COG2956 207 LQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME---TNTGAD 283 (389)
T ss_pred HhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---ccCCcc
Confidence 542 22233344455666677777777777766654333344555666666777777777666666655 223333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH-HhCCCCCCHHHHHHHHHH
Q 010405 278 HYACMVDLLGRAGLLEEAENFI-ASMPMKPDNVIWGTLLGA 317 (511)
Q Consensus 278 ~~~~li~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~ll~~ 317 (511)
.-..+.+......-.+.|...+ +.+..+|+...+..|+..
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~ 324 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDY 324 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHh
Confidence 3444444444444444444433 333455666666555554
No 46
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.45 E-value=2.8e-11 Score=112.12 Aligned_cols=256 Identities=11% Similarity=0.050 Sum_probs=181.0
Q ss_pred HHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 010405 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA--CAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSI 190 (511)
Q Consensus 113 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 190 (511)
-|.++|+++.|++++.-+.+.+-+.-...-+.|-.. ...-.++..|.++-+..+... ..+....+.-.+.-...|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 367788888888888777665433222222222222 222345666666666665442 22333333334444567999
Q ss_pred HHHHHHHHhcCCCCeeehHHHH---HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHch
Q 010405 191 DLAMQVFHSYGDKDVSAYTSAI---FGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMF 267 (511)
Q Consensus 191 ~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 267 (511)
++|.+.|++....|...-.+|. ..+-..|+.++|++.|-++... +.-+......+...|....+..+|++++.+..
T Consensus 507 dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 9999999999887776544443 3466789999999999887653 23356677778888999999999999998886
Q ss_pred hhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhH
Q 010405 268 DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRY 345 (511)
Q Consensus 268 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 345 (511)
. -++.|+....-|.+.|-+.|+-.+|.+..-+- ..-| +..+..-|..-|....-.++++..|+++.-+.|+...-.
T Consensus 586 s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwq 663 (840)
T KOG2003|consen 586 S--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQ 663 (840)
T ss_pred c--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHH
Confidence 5 45667899999999999999999999875443 3333 444544466667777788999999999999999765444
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 346 ILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 346 ~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
..++.++.+.|++..|..+++....+-
T Consensus 664 lmiasc~rrsgnyqka~d~yk~~hrkf 690 (840)
T KOG2003|consen 664 LMIASCFRRSGNYQKAFDLYKDIHRKF 690 (840)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 556667788999999999999887643
No 47
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.44 E-value=2.4e-10 Score=114.83 Aligned_cols=354 Identities=14% Similarity=0.096 Sum_probs=258.1
Q ss_pred HHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHccC---CCCChhHHHHHHHHHHhcCCHH
Q 010405 17 LIQFYSVCGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGEILEGLKLFDKM---PQRNDVSWNSILGGLVRFGSVD 90 (511)
Q Consensus 17 li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~~~~~~~~li~~~~~~g~~~ 90 (511)
..+.....|++++|.+++.++. +.+...|.+|...|-+.|+.++++..+-.+ ...|...|..+.....+.|+++
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHH
Confidence 3444445599999999999876 456788999999999999999999876544 3457788999999999999999
Q ss_pred HHHHHHhhCCCC---ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHH----HHHHHHHHhcCCHHHHHHHHH
Q 010405 91 DACRVFNQMPKR---SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL----VSLLSACAQLGALDYGNWVYS 163 (511)
Q Consensus 91 ~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~----~~ll~~~~~~~~~~~a~~~~~ 163 (511)
.|.-.|.+..+. +...+---+..|-+.|+...|+..|.++.+...+.|..-+ -.++..+...++-+.|.++++
T Consensus 225 qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 225 QARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999998763 3344445577899999999999999999887432233323 334555666777788888888
Q ss_pred HHHHcC-CCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--------------------------CCeeehHH----HH
Q 010405 164 YIQKKC-IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD--------------------------KDVSAYTS----AI 212 (511)
Q Consensus 164 ~~~~~~-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------------------------~~~~~~~~----li 212 (511)
.....+ -..+...++.++..|.+...++.|......+.. ++..+|.. +.
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ 384 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLM 384 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHh
Confidence 777632 234556788899999999999999877765532 11122222 22
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcC
Q 010405 213 FGLAMNGHSIEAFELFENMKSKGI--SPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAG 290 (511)
Q Consensus 213 ~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 290 (511)
-++......+....+..-.....+ .-+...|.-+..++...|.+.+|..+|..+.. ....-+...|-.+...|-..|
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~-~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN-REGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc-CccccchhhhHHHHHHHHHHh
Confidence 233333333333333333444443 33456788899999999999999999999987 333344778999999999999
Q ss_pred CHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCchhHHHHHHHHHhhcCC---------CCchhHHHHHHHHHHcCCch
Q 010405 291 LLEEAENFIASM-PMKPDNV-IWGTLLGACRVHRNAEMGQRIGNMLIESDQ---------NHDGRYILLSNIYVETLKGE 359 (511)
Q Consensus 291 ~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p---------~~~~~~~~l~~~~~~~g~~~ 359 (511)
..++|.+.|+.. ...|+.. .--+|...+...|+.++|.++++.+..-++ .+..........|...|+.+
T Consensus 464 e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E 543 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKRE 543 (895)
T ss_pred hHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHH
Confidence 999999999987 5556443 445566778999999999999998764221 12345567788899999999
Q ss_pred HHHHHHHHHHhC
Q 010405 360 NAEEVRKTMRKR 371 (511)
Q Consensus 360 ~A~~~~~~m~~~ 371 (511)
+-..+-..|...
T Consensus 544 ~fi~t~~~Lv~~ 555 (895)
T KOG2076|consen 544 EFINTASTLVDD 555 (895)
T ss_pred HHHHHHHHHHHH
Confidence 877777666553
No 48
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.40 E-value=1.1e-11 Score=123.72 Aligned_cols=265 Identities=14% Similarity=0.173 Sum_probs=195.9
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 010405 125 ALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD 204 (511)
Q Consensus 125 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~ 204 (511)
.++..+...|+.|+..||..++.-|+..|+.+.|- +|..|.-...+.+..+++.++......++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45677888999999999999999999999999999 9999998888889999999999998888887775 678
Q ss_pred eeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHH
Q 010405 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVD 284 (511)
Q Consensus 205 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 284 (511)
..+|+.|..+|.++|+... ++..++ -...+...++..|.-..-..++..+.-..+.-||... .+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHH
Confidence 8899999999999999865 333333 1223445566667666666666665432345566443 455
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHH
Q 010405 285 LLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH-RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEE 363 (511)
Q Consensus 285 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 363 (511)
...-.|.++.+.+++..+|...-......++.-+... ..+++-....+...+ .| ++.+|..+...-..+|+.+-|..
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~-~s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-AP-TSETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CC-ChHHHHHHHHHHHhcCchhhHHH
Confidence 5666788999999999886432111121234444433 344444455555554 45 56899999999999999999999
Q ss_pred HHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCcccCCccccc
Q 010405 364 VRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGYNVETRSVMF 429 (511)
Q Consensus 364 ~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ 429 (511)
++.+|+++|++..+..+|..+-+ .. ...-++.++..|++.|+.|+.+|..-
T Consensus 226 ll~emke~gfpir~HyFwpLl~g--------~~-------~~q~~e~vlrgmqe~gv~p~seT~ad 276 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLLLG--------IN-------AAQVFEFVLRGMQEKGVQPGSETQAD 276 (1088)
T ss_pred HHHHHHHcCCCcccccchhhhhc--------Cc-------cchHHHHHHHHHHHhcCCCCcchhHH
Confidence 99999999999999999986533 11 12234467889999999999987543
No 49
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.37 E-value=1.6e-10 Score=105.04 Aligned_cols=196 Identities=12% Similarity=0.026 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010405 174 SILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250 (511)
Q Consensus 174 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 250 (511)
...+..+...|...|++++|.+.|++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 34555566666666666666666665543 233455666666777777777777777776643 22445566667777
Q ss_pred hccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHH
Q 010405 251 SHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQ 328 (511)
Q Consensus 251 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 328 (511)
...|++++|...+....+....+.....+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 7788888888888887762222233456677788888888888888888776 3334 4557777788888899999999
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 329 RIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 329 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
..++++.+..|.++..+..++..+...|+.++|..+.+.+.+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999998888787778888888889999999999988877754
No 50
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=9.4e-10 Score=105.19 Aligned_cols=261 Identities=13% Similarity=-0.014 Sum_probs=211.3
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 010405 103 SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182 (511)
Q Consensus 103 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 182 (511)
++.....-..-+...+++.+.+++++...+.. ++....+..-|.++...|+..+-..+=.++++. .|..+.+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 44455556677888999999999999988764 566666666677888889888877777778776 4667889999999
Q ss_pred HHHhcCCHHHHHHHHHhcCCCC---eeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHH
Q 010405 183 MYAKCGSIDLAMQVFHSYGDKD---VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259 (511)
Q Consensus 183 ~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 259 (511)
-|.-.|+..+|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-...-+..+.--|...++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 9999999999999999876533 457999999999999999999998887653 111222233344568889999999
Q ss_pred HHHHHHchhhcCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhcCchhHHHH
Q 010405 260 FYYFHSMFDVHGIKP-ELDHYACMVDLLGRAGLLEEAENFIASMP--------MKP-DNVIWGTLLGACRVHRNAEMGQR 329 (511)
Q Consensus 260 ~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~p-~~~~~~~ll~~~~~~g~~~~a~~ 329 (511)
.++|.+... +.| |+...+-+.-.....+.+.+|..+|+..- ..+ -..+++.|..+|++.+.+++|+.
T Consensus 400 e~Ff~~A~a---i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 400 EKFFKQALA---IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHh---cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 999999875 545 57778888877888889999999987751 111 34567888899999999999999
Q ss_pred HHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 010405 330 IGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMR 369 (511)
Q Consensus 330 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 369 (511)
.+++++.+.|.++.+|.+++-.|...|+++.|.+.|.+..
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 9999999999999999999999999999999999997665
No 51
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.36 E-value=8.6e-09 Score=100.18 Aligned_cols=261 Identities=11% Similarity=0.044 Sum_probs=212.0
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 010405 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMY 184 (511)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 184 (511)
.+|+.-...|.+.+.++-|..+|...++. .+-+...|......--..|..+....++++++..- +-....|-....-+
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~ 594 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEK 594 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHH
Confidence 46777777788888888888888888775 23355667666666677788999999999998873 44566777777888
Q ss_pred HhcCCHHHHHHHHHhcCCC---CeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010405 185 AKCGSIDLAMQVFHSYGDK---DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261 (511)
Q Consensus 185 ~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 261 (511)
...|++..|+.++....+. +...|-+-+.....+.+++.|..+|.+... ..|+...|.--+..-...++.++|.+
T Consensus 595 w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHH
Confidence 8899999999999887652 445688888888899999999999998876 46677777666666667899999999
Q ss_pred HHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCC
Q 010405 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKPD-NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQ 339 (511)
Q Consensus 262 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 339 (511)
++++..+. ++.-...|..+.+.+-+.++++.|.+.|..- ..-|+ ...|-.|...--+.|++.+|..++++..-.+|
T Consensus 673 llEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP 750 (913)
T KOG0495|consen 673 LLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP 750 (913)
T ss_pred HHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC
Confidence 99999872 3333678889999999999999999988764 44464 55788887888888999999999999999999
Q ss_pred CCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010405 340 NHDGRYILLSNIYVETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 340 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 371 (511)
.+...|...+.+-.+.|+.+.|..+..+..+.
T Consensus 751 k~~~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 751 KNALLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999888766553
No 52
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.35 E-value=3e-10 Score=111.55 Aligned_cols=238 Identities=17% Similarity=0.153 Sum_probs=164.7
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHC-----C-CCCCHhH-HHHHHHHHHhcCCHHHHHHHHHHHHHc-----C--CC
Q 010405 106 SWVVLISGFAQNGRPKEALALFREMQSL-----D-LEPNSAI-LVSLLSACAQLGALDYGNWVYSYIQKK-----C--IK 171 (511)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~ 171 (511)
+...+...|...|++++|..+++..++. | ..|...+ ...+...|...+++++|..+|+.+... | .+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444778888888888888888776553 1 1233322 233566677777777777777776652 2 11
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCC-CCCH-HHHHHHHHH
Q 010405 172 LDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGI-SPDS-ISYIAVLSA 249 (511)
Q Consensus 172 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~-~t~~~ll~~ 249 (511)
.-..+++.|..+|.+.|++++|...++ .|++++++. .|. .|.. .-++.+...
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e------------------------~Al~I~~~~--~~~~~~~v~~~l~~~~~~ 334 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCE------------------------RALEIYEKL--LGASHPEVAAQLSELAAI 334 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHH------------------------HHHHHHHHh--hccChHHHHHHHHHHHHH
Confidence 123455666667777777777777665 556666652 222 2222 245566677
Q ss_pred HhccCCHHHHHHHHHHchhhcC--CCCC----HhHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCC-HHHHHH
Q 010405 250 CSHLGWVEKGFYYFHSMFDVHG--IKPE----LDHYACMVDLLGRAGLLEEAENFIASM---------PMKPD-NVIWGT 313 (511)
Q Consensus 250 ~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ 313 (511)
|...+.+++|..++....+.+. +.++ ..+++.|...|...|++++|.++++++ +..+. ...++.
T Consensus 335 ~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~ 414 (508)
T KOG1840|consen 335 LQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQ 414 (508)
T ss_pred HHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHH
Confidence 8888999999988887765432 2222 467899999999999999999999876 11222 346677
Q ss_pred HHHHHHhcCchhHHHHHHHHHhh----cCC---CCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 010405 314 LLGACRVHRNAEMGQRIGNMLIE----SDQ---NHDGRYILLSNIYVETLKGENAEEVRKTMR 369 (511)
Q Consensus 314 ll~~~~~~g~~~~a~~~~~~~~~----~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 369 (511)
|...|.+.+++++|.++|.+... ..| +...+|..|+.+|.+.|++++|.++.+...
T Consensus 415 la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 415 LAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 88889999999999999988776 344 445678899999999999999999998775
No 53
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=6.4e-10 Score=106.32 Aligned_cols=283 Identities=15% Similarity=0.130 Sum_probs=206.6
Q ss_pred CCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCC---CChhHHHHHHHHHHHcCChHHHHHHHccCCC---CChhHHHHH
Q 010405 6 SFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDD---LDVVSWNSMINGYVRNGEILEGLKLFDKMPQ---RNDVSWNSI 79 (511)
Q Consensus 6 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~l 79 (511)
|+..|+.+...-.+-+-.++++.+..++++...+ +....+..-|.++...|+..+-..+=.++.+ ..+.+|-++
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aV 318 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAV 318 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhH
Confidence 4455666677777777788899999999887663 4555677778888888888777666666654 356789888
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCh---hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHH
Q 010405 80 LGGLVRFGSVDDACRVFNQMPKRSL---VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALD 156 (511)
Q Consensus 80 i~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~ 156 (511)
.--|.-.|+.++|++.|.+...-|. ..|-.....|+-.|..++|+..|...-+. ++-....+.-+.--|.+.++++
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHH
Confidence 8888888999999999988765433 57999999999999999999988776554 2334445556666788889999
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 010405 157 YGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGI 236 (511)
Q Consensus 157 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 236 (511)
.|.+.|.++.... |.|+.+.+-+.-++...+.+.+|..+|+... ...........
T Consensus 398 LAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l------------------------~~ik~~~~e~~ 452 (611)
T KOG1173|consen 398 LAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKAL------------------------EVIKSVLNEKI 452 (611)
T ss_pred HHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHH------------------------HHhhhcccccc
Confidence 9999999888874 6678888888877777888888888877432 22222222211
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 010405 237 SPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKPDNVIWGTLL 315 (511)
Q Consensus 237 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll 315 (511)
--..+++.|..+|.+.+..++|+..|++... -.+-+..++.++.-.|...|+++.|.+.|.+. .++||..+...++
T Consensus 453 -~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL 529 (611)
T KOG1173|consen 453 -FWEPTLNNLGHAYRKLNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELL 529 (611)
T ss_pred -chhHHHHhHHHHHHHHhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHH
Confidence 2345677777788888888888888877775 23445677777777788888888888887765 6677776666666
Q ss_pred HH
Q 010405 316 GA 317 (511)
Q Consensus 316 ~~ 317 (511)
+.
T Consensus 530 ~~ 531 (611)
T KOG1173|consen 530 KL 531 (611)
T ss_pred HH
Confidence 53
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=99.33 E-value=4.9e-10 Score=115.12 Aligned_cols=257 Identities=14% Similarity=0.037 Sum_probs=186.5
Q ss_pred ChhHHHHHHHHHHH-----CCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHh---------cCCHHHHHHHHHHHHH
Q 010405 103 SLVSWVVLISGFAQ-----NGRPKEALALFREMQSLDLEP-NSAILVSLLSACAQ---------LGALDYGNWVYSYIQK 167 (511)
Q Consensus 103 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~ 167 (511)
+...|...+.+-.. .+..++|+++|++..+. .| +...|..+..++.. .+++++|...++++++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 45566666665322 23467899999999875 44 44556666555432 2347899999999998
Q ss_pred cCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH-HHH
Q 010405 168 KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD--K-DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS-ISY 243 (511)
Q Consensus 168 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~ 243 (511)
.. +.+...+..+..++...|++++|...|++..+ | +...|..+...+...|++++|+..+++..+.. |+. ..+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhH
Confidence 75 45778888999999999999999999998765 3 44578888999999999999999999998864 442 233
Q ss_pred HHHHHHHhccCCHHHHHHHHHHchhhcCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHh
Q 010405 244 IAVLSACSHLGWVEKGFYYFHSMFDVHGIKP-ELDHYACMVDLLGRAGLLEEAENFIASM-PMKPDNVI-WGTLLGACRV 320 (511)
Q Consensus 244 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~ll~~~~~ 320 (511)
..++..+...|++++|...++++.+. .+| ++..+..+..+|...|++++|...++++ +..|+... ++.+...+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 33444566689999999999998762 234 4556778888999999999999999887 44565444 4444455677
Q ss_pred cCchhHHHHHHHHHhh---cCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 321 HRNAEMGQRIGNMLIE---SDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 321 ~g~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
.| +.|...++++.+ ..|.++. .+...|.-.|+-+.+... +++.+.|
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPG---LLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCch---HHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 66 478888888777 3443332 366677777887777766 7777654
No 55
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.33 E-value=1.7e-10 Score=102.80 Aligned_cols=230 Identities=11% Similarity=0.084 Sum_probs=158.0
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 010405 108 VVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC 187 (511)
Q Consensus 108 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 187 (511)
+.|..+|.+.|.+.+|.+.|+.-+.. .|-..||..|-.+|.+..+++.|..++.+-++. +|.|+....-+...+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 45667777777777777777666654 455666777777777777777777777776665 345555555566666666
Q ss_pred CCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010405 188 GSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264 (511)
Q Consensus 188 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 264 (511)
++.++|.++|+...+ -++.+...+..+|.-.++++-|+..|+++++.|+. +...|+.+.-+|.-.+++|-++.-|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 777777777766554 24455555556666666777777777777666654 55566666666666666655555554
Q ss_pred HchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchh
Q 010405 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGR 344 (511)
Q Consensus 265 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 344 (511)
+... . .-+.++ -..+|..|-......||+..|.+.|+-.+..+|++...
T Consensus 383 RAls-t------------------at~~~~------------aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea 431 (478)
T KOG1129|consen 383 RALS-T------------------ATQPGQ------------AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA 431 (478)
T ss_pred HHHh-h------------------ccCcch------------hhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence 4433 0 111111 23457667667777899999999999999999999999
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 345 YILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 345 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
++.|+..-.+.|++++|..+++......
T Consensus 432 lnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 432 LNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 9999999999999999999998887644
No 56
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.33 E-value=7.1e-09 Score=95.46 Aligned_cols=275 Identities=14% Similarity=0.080 Sum_probs=123.8
Q ss_pred cCChHHHHHHHccCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC----ChhHHHHHHHHHHHCCChhHHHHHH
Q 010405 55 NGEILEGLKLFDKMPQ---RNDVSWNSILGGLVRFGSVDDACRVFNQMPKR----SLVSWVVLISGFAQNGRPKEALALF 127 (511)
Q Consensus 55 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~ 127 (511)
.|++.+|.++..+..+ .....|..-..+--+.|+.+.|-..+.+..++ +....-+........|+...|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 3555555555544432 11222222233344455555555555554432 2233444445555555555555555
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH-------HHHHHHHHHHHhcCCHHHHHHHHHhc
Q 010405 128 REMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDS-------ILCAALIDMYAKCGSIDLAMQVFHSY 200 (511)
Q Consensus 128 ~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~y~~~g~~~~A~~~~~~~ 200 (511)
.++...+ +-+.........+|.+.|++.....+...+.+.|.-.+. .+|+.+++-....+..+.-...++..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 5555443 223344445555555555555555555555555443221 23333333333333333333344444
Q ss_pred CC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHh
Q 010405 201 GD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELD 277 (511)
Q Consensus 201 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 277 (511)
+. .++..-.+++.-+.+.|+.++|.++..+..+.+..|+.. .+-.+.+.++.+.-.+..+.-.+..+..| .
T Consensus 256 pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~ 329 (400)
T COG3071 256 PRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPEDP--L 329 (400)
T ss_pred cHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCCh--h
Confidence 32 233333444444455555555555555555444444311 11123344444444444443333222222 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhh
Q 010405 278 HYACMVDLLGRAGLLEEAENFIASM-PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIE 336 (511)
Q Consensus 278 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (511)
.+..|...|.+.+.|.+|...|+.. ...|+..+|+.+..++.+.|++++|.+..++.+.
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4444555555555555555555443 4444555555555555555555555555544443
No 57
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.33 E-value=1.8e-09 Score=96.44 Aligned_cols=287 Identities=13% Similarity=0.105 Sum_probs=208.4
Q ss_pred cCCHHHHHHHHhhCCCCChh---HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH------hHHHHHHHHHHhcCCHH
Q 010405 86 FGSVDDACRVFNQMPKRSLV---SWVVLISGFAQNGRPKEALALFREMQSLDLEPNS------AILVSLLSACAQLGALD 156 (511)
Q Consensus 86 ~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~t~~~ll~~~~~~~~~~ 156 (511)
..+.++|.++|-+|.+.|.. +.-+|.+.|-+.|..++|+.+-+.+.++ ||. .....|..-|...|-+|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 47889999999998876554 4557888999999999999998888764 332 34455667788889999
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehH--------HHHHHHHHcCChHHHHHHH
Q 010405 157 YGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYT--------SAIFGLAMNGHSIEAFELF 228 (511)
Q Consensus 157 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~--------~li~~~~~~g~~~~A~~~~ 228 (511)
.|+.+|..+.+.+ ..-.....-|+..|-+..+|++|+++-+++.+-+...++ -+...+....+.+.|..++
T Consensus 125 RAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 125 RAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 9999999998764 234556777899999999999999998877654444433 3444445567889999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC
Q 010405 229 ENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKPD 307 (511)
Q Consensus 229 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 307 (511)
.+..+.+.+ ....=..+.+.....|+++.|.+.++...+ .+..--..+...|..+|...|+.++...++.++ ...+.
T Consensus 204 ~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e-Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 204 KKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLE-QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 998876433 222223456678889999999999999987 443333677888899999999999999988776 44455
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHH---HcCCchHHHHHHHHHHhCCCccCCce
Q 010405 308 NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYV---ETLKGENAEEVRKTMRKRKIKRAPGC 379 (511)
Q Consensus 308 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~m~~~g~~~~~~~ 379 (511)
...-..+...-....-.+.|.....+-+...|. ...+..|+.... ..|.+.+-..+++.|...-++..|..
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt-~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~Y 355 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRRKPT-MRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRY 355 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc-HHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCc
Confidence 555555555555555577788777777777885 455666666543 33557778888888877666655543
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.32 E-value=6.8e-09 Score=95.55 Aligned_cols=275 Identities=13% Similarity=0.101 Sum_probs=207.9
Q ss_pred cCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 010405 86 FGSVDDACRVFNQMPKR---SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVY 162 (511)
Q Consensus 86 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 162 (511)
.|++..|+++..+-.+. ....|..-+.+--+.|+.+.|-.++.+.-+..-.++.....+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 69999999999886542 345566666777888999999999999877533455555666667788899999999999
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCee-----------ehHHHHHHHHHcCChHHHHHHHHHH
Q 010405 163 SYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS-----------AYTSAIFGLAMNGHSIEAFELFENM 231 (511)
Q Consensus 163 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~-----------~~~~li~~~~~~g~~~~A~~~~~~m 231 (511)
.++.+.+ +-++.+......+|.+.|++.....+...+.+.... +|+.++.-....+..+.-...+++.
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 8888876 557788899999999999999999999998874332 4666666555555555555566665
Q ss_pred HhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHh----CCCCCC
Q 010405 232 KSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS----MPMKPD 307 (511)
Q Consensus 232 ~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~----~~~~p~ 307 (511)
..+ .+-+...-.+++.-+...|+.++|.++..+..+ .+..|+. +..-...+-++.+.-++..+. .|..|
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk-~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p- 328 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALK-RQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP- 328 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHH-hccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh-
Confidence 433 344555566777788899999999999998887 5666661 122233445555554444443 34444
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 308 NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 308 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
..+.+|...|.+++.+.+|...|+.+.+..|. ...|..++.+|.+.|+..+|.+++++-.-
T Consensus 329 -~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 -LLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred -hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 67888999999999999999999999999985 58999999999999999999999987653
No 59
>PF13041 PPR_2: PPR repeat family
Probab=99.31 E-value=6.2e-12 Score=83.43 Aligned_cols=50 Identities=32% Similarity=0.581 Sum_probs=45.6
Q ss_pred CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 010405 102 RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151 (511)
Q Consensus 102 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 151 (511)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999998864
No 60
>PF13041 PPR_2: PPR repeat family
Probab=99.28 E-value=7.9e-12 Score=82.93 Aligned_cols=50 Identities=36% Similarity=0.614 Sum_probs=45.3
Q ss_pred CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010405 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSH 252 (511)
Q Consensus 203 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 252 (511)
||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68889999999999999999999999999999999999999999998874
No 61
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.28 E-value=1.9e-09 Score=98.04 Aligned_cols=192 Identities=13% Similarity=0.064 Sum_probs=107.2
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 010405 104 LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDM 183 (511)
Q Consensus 104 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 183 (511)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3567777777888888888888887776643 3345666677777777777777777777777654 3345566666666
Q ss_pred HHhcCCHHHHHHHHHhcCCC-----CeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHH
Q 010405 184 YAKCGSIDLAMQVFHSYGDK-----DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEK 258 (511)
Q Consensus 184 y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 258 (511)
|...|++++|.+.|++.... ....+..+...+...|++++|...+.+..... +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 77777777777666665431 11234444444555555555555555544432 1123334444444445555555
Q ss_pred HHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 010405 259 GFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300 (511)
Q Consensus 259 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 300 (511)
|...+++..+. .+.+...+..++..+...|+.++|..+.+
T Consensus 188 A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 227 (234)
T TIGR02521 188 ARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGA 227 (234)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 55555544441 12223333344444444444444444433
No 62
>PRK12370 invasion protein regulator; Provisional
Probab=99.25 E-value=1.4e-09 Score=111.69 Aligned_cols=241 Identities=14% Similarity=0.020 Sum_probs=171.9
Q ss_pred CCHHHHHHHHhhCCCC---ChhHHHHHHHHHH---------HCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 010405 87 GSVDDACRVFNQMPKR---SLVSWVVLISGFA---------QNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA 154 (511)
Q Consensus 87 g~~~~A~~~~~~~~~~---~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 154 (511)
+++++|...|++..+. +...|..+..+|. ..+++++|...+++..+.+ +-+..++..+..++...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 4477899999887653 3355666665544 2345789999999998864 3467788888888899999
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCe-eehHHHHHHHHHcCChHHHHHHHHHH
Q 010405 155 LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD--KDV-SAYTSAIFGLAMNGHSIEAFELFENM 231 (511)
Q Consensus 155 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m 231 (511)
+++|...++++++.+ |.+...+..+...|...|++++|...|++..+ |+. ..+..++..+...|++++|+..+++.
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 999999999999885 44677888899999999999999999998875 332 23344455577789999999999998
Q ss_pred HhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHhC----CCC
Q 010405 232 KSKGISPD-SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE-LDHYACMVDLLGRAGLLEEAENFIASM----PMK 305 (511)
Q Consensus 232 ~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~ 305 (511)
.... .|+ ...+..+..++...|+.++|...+.++.. ..|+ ....+.+...|...| ++|...++.+ ...
T Consensus 433 l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 433 RSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEIST---QEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh---ccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 7653 343 44466677788899999999999988765 2343 444556666777777 4676666555 233
Q ss_pred CCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcC
Q 010405 306 PDNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338 (511)
Q Consensus 306 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 338 (511)
|...-+..+ .+.-.|+.+.+... +++.+.+
T Consensus 507 ~~~~~~~~~--~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGLLPL--VLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchHHHH--HHHHHhhhHHHHHH-HHhhccc
Confidence 433344333 34455676666666 7766643
No 63
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.25 E-value=4.7e-08 Score=91.74 Aligned_cols=358 Identities=10% Similarity=0.120 Sum_probs=226.9
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHccCCC--CChhHHHHHHHHHH
Q 010405 10 DVFVKNSLIQFYSVCGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ--RNDVSWNSILGGLV 84 (511)
Q Consensus 10 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~ 84 (511)
+...|-.-+.+=.++..+..|+.+|++.. ++-...|--.+-.=-..|+...|.++|++..+ |+...|++.|+.=.
T Consensus 106 ~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fEl 185 (677)
T KOG1915|consen 106 NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFEL 185 (677)
T ss_pred cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 34445555555556666667777666533 11122344444444445666666666665543 66666666666666
Q ss_pred hcCCHHHHHHHHhhCC--CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHC-C---------------------------
Q 010405 85 RFGSVDDACRVFNQMP--KRSLVSWVVLISGFAQNGRPKEALALFREMQSL-D--------------------------- 134 (511)
Q Consensus 85 ~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~--------------------------- 134 (511)
+-..++.|..++++.. .|++.+|--....=.++|+...|..+|...... |
T Consensus 186 RykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~ 265 (677)
T KOG1915|consen 186 RYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARF 265 (677)
T ss_pred HhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666543 455555555555555555555555555544331 1
Q ss_pred --------CCCC--HhHHHHHHHHHHhcCCHHHHHH--------HHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 010405 135 --------LEPN--SAILVSLLSACAQLGALDYGNW--------VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196 (511)
Q Consensus 135 --------~~p~--~~t~~~ll~~~~~~~~~~~a~~--------~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 196 (511)
++.+ ...|......=-+-|+...... -++.+++.+ +.|-.+|--.++.-...|+.+...++
T Consensus 266 iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~ 344 (677)
T KOG1915|consen 266 IYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRET 344 (677)
T ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHH
Confidence 1111 1122222221122233222211 122233322 44555666677777778999999999
Q ss_pred HHhcCCC--Ce---eehHHHHH--------HHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh----ccCCHHHH
Q 010405 197 FHSYGDK--DV---SAYTSAIF--------GLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS----HLGWVEKG 259 (511)
Q Consensus 197 ~~~~~~~--~~---~~~~~li~--------~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~----~~g~~~~a 259 (511)
|++.... .. ..|..-|- .=....+.+.+.++|+..++. ++-...||.-+--.|+ ++.++..|
T Consensus 345 yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~A 423 (677)
T KOG1915|consen 345 YERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGA 423 (677)
T ss_pred HHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHH
Confidence 9987652 11 12322221 112467889999999998883 4445677776554443 56889999
Q ss_pred HHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhc
Q 010405 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIES 337 (511)
Q Consensus 260 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 337 (511)
.+++.... |.-|...++...|..-.+.+.++....++++. ...| |-.+|......-...|+.+.|..+|+-++..
T Consensus 424 RkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 424 RKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred HHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 99998885 68899999999999999999999999999987 5566 6678988888888999999999999999883
Q ss_pred CCCC--chhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 338 DQNH--DGRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 338 ~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
...+ ...+-..++.-...|.++.|..+++++.++.
T Consensus 501 p~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 501 PALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred cccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 2211 2455566777788999999999999998764
No 64
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.23 E-value=3.1e-08 Score=98.39 Aligned_cols=363 Identities=13% Similarity=0.077 Sum_probs=248.9
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHhcCCC---CChhHHHHHHHHHHHcCChHHHHHHHccCCCCC--h---hHHHH
Q 010405 7 FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDD---LDVVSWNSMINGYVRNGEILEGLKLFDKMPQRN--D---VSWNS 78 (511)
Q Consensus 7 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~---~~~~~ 78 (511)
+..|+.+|..|.-+...+|+++.+-+.|++..+ .....|+.+...|...|.-..|+.+++.-..+. + ..+-.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 557889999999999999999999999997553 345679999999999999999999998775422 2 22222
Q ss_pred HHHHHH-hcCCHHHHHHHHhhCCC--------CChhHHHHHHHHHHHC-----------CChhHHHHHHHHHHHCCCCCC
Q 010405 79 ILGGLV-RFGSVDDACRVFNQMPK--------RSLVSWVVLISGFAQN-----------GRPKEALALFREMQSLDLEPN 138 (511)
Q Consensus 79 li~~~~-~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~~~~p~ 138 (511)
.-..|. +.+.++++...-.+... .....|..+.-+|... ....++++.+++..+.+. -|
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~-~d 477 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP-TD 477 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC-CC
Confidence 223333 34556665555444332 2334555555555432 234678888888877642 23
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC--C-e----------
Q 010405 139 SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK--D-V---------- 205 (511)
Q Consensus 139 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~-~---------- 205 (511)
+.....+.--|+..++++.|.+...+..+.+-..+...|.-|.-.+...+++.+|+.+.+...+. + -
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIE 557 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhh
Confidence 33333344456778899999999999999876778889999999999999999999988765431 1 0
Q ss_pred ----------eehHHHHHHHH------H-----------------cCChHHHHHHHHHHH--------hCC---------
Q 010405 206 ----------SAYTSAIFGLA------M-----------------NGHSIEAFELFENMK--------SKG--------- 235 (511)
Q Consensus 206 ----------~~~~~li~~~~------~-----------------~g~~~~A~~~~~~m~--------~~g--------- 235 (511)
.|...++...- + .++..+|.+..+.+. ..|
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~ 637 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSST 637 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccc
Confidence 01111111100 0 011222222211110 001
Q ss_pred CC--CCH------HHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC
Q 010405 236 IS--PDS------ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP 306 (511)
Q Consensus 236 ~~--p~~------~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p 306 (511)
+. |+. ..|......+...+..++|...+.+..+ -.+.....|......+...|.+++|.+.|... -+.|
T Consensus 638 ~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP 715 (799)
T KOG4162|consen 638 VLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDP 715 (799)
T ss_pred ccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCC
Confidence 01 111 1223344456667778888877777765 23345667777888888999999999988776 6677
Q ss_pred C-HHHHHHHHHHHHhcCchhHHHH--HHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 307 D-NVIWGTLLGACRVHRNAEMGQR--IGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 307 ~-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
+ +.+..++...+...|+...|.. ++..+.+.+|.++..|..|+.++-+.|+.++|.+.|+...+..
T Consensus 716 ~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 716 DHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 5 5588889999999999999988 9999999999999999999999999999999999999876543
No 65
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.22 E-value=1.2e-09 Score=109.30 Aligned_cols=336 Identities=12% Similarity=0.082 Sum_probs=203.8
Q ss_pred eecCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCCC----CChhHHHHHHHHHHHcCChHHHHHHHccCCCCChhHHHH
Q 010405 3 VKNSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESDD----LDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNS 78 (511)
Q Consensus 3 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 78 (511)
...|+.||.++|.+||.-|+..|+.+.|- +|.-|.- -+...++.++.+..++++.+.+. +|.+.+|..
T Consensus 17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~ 88 (1088)
T KOG4318|consen 17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTN 88 (1088)
T ss_pred HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHH
Confidence 35799999999999999999999999998 8887763 35567899999988888887665 788999999
Q ss_pred HHHHHHhcCCHHH---HHHHHhhCCC-------CChhHH---------------HHHHHHHHHCCChhHHHHHHHHHHHC
Q 010405 79 ILGGLVRFGSVDD---ACRVFNQMPK-------RSLVSW---------------VVLISGFAQNGRPKEALALFREMQSL 133 (511)
Q Consensus 79 li~~~~~~g~~~~---A~~~~~~~~~-------~~~~~~---------------~~li~~~~~~g~~~~A~~~~~~m~~~ 133 (511)
|..+|...|++.. .++.++.+.. ....-| ...+....-.|-++.+++++..+...
T Consensus 89 Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvs 168 (1088)
T KOG4318|consen 89 LLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVS 168 (1088)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 9999999999665 3332222211 011111 12333344445556666655544322
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC----eeehH
Q 010405 134 DLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD----VSAYT 209 (511)
Q Consensus 134 ~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~----~~~~~ 209 (511)
.- +. ++...++-+... ..-.+++........-.|+..++.++++.-...|+++.|..++.+|.++. ..-|.
T Consensus 169 a~--~~-p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFw 243 (1088)
T KOG4318|consen 169 AW--NA-PFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFW 243 (1088)
T ss_pred cc--cc-hHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccch
Confidence 10 00 111123333222 23333444433332225888899999999888999999999999998753 33344
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC----HhHHHHHHHH
Q 010405 210 SAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE----LDHYACMVDL 285 (511)
Q Consensus 210 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~ 285 (511)
.++.+ .+...-+..+++.|...|+.|+..|+...+-.+...|....+. .|.+.+ ...+..+..+
T Consensus 244 pLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~---------e~sq~~hg~tAavrsaa~rg 311 (1088)
T KOG4318|consen 244 PLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGE---------EGSQLAHGFTAAVRSAACRG 311 (1088)
T ss_pred hhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcc---------cccchhhhhhHHHHHHHhcc
Confidence 55544 7778888888888999999999999988887777755532222 122221 2223333332
Q ss_pred HHHcCCHHHH-----HHHHHhC---CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhh----cCCCCchhHHHHHHHHH
Q 010405 286 LGRAGLLEEA-----ENFIASM---PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIE----SDQNHDGRYILLSNIYV 353 (511)
Q Consensus 286 ~~~~g~~~~A-----~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~p~~~~~~~~l~~~~~ 353 (511)
.....+++.- ...+.+. ++.....+|.. ..-...+|..++.+++...+.. +.+++...|..++.-|.
T Consensus 312 ~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~-c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyF 390 (1088)
T KOG4318|consen 312 LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSM-CEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYF 390 (1088)
T ss_pred cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHH-HHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHH
Confidence 1111122111 1111111 22222344433 3334447888888888888776 45666777887777776
Q ss_pred HcCCchHHHHH
Q 010405 354 ETLKGENAEEV 364 (511)
Q Consensus 354 ~~g~~~~A~~~ 364 (511)
+.-+.--...+
T Consensus 391 rr~e~~~~~~i 401 (1088)
T KOG4318|consen 391 RRIERHICSRI 401 (1088)
T ss_pred HHHHhhHHHHH
Confidence 65443333333
No 66
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=4.8e-08 Score=90.20 Aligned_cols=351 Identities=11% Similarity=0.025 Sum_probs=215.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHH-HHHcCC-h-HHHHH---HHccCC--------------C--
Q 010405 13 VKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMING-YVRNGE-I-LEGLK---LFDKMP--------------Q-- 70 (511)
Q Consensus 13 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~-~~~~g~-~-~~A~~---~~~~m~--------------~-- 70 (511)
.---.+..|...++-++|.....+.++.-...-+.|+.+ +.+.|. - ++.+. +..+.+ .
T Consensus 99 ~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~ 178 (564)
T KOG1174|consen 99 QRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGN 178 (564)
T ss_pred HHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcch
Confidence 334556778788899999999988885433334444433 333322 1 11111 111111 0
Q ss_pred -------------CChhHHHHHHHHHHhc--CCHHHHHHHH--hhCC---CCChhHHHHHHHHHHHCCChhHHHHHHHHH
Q 010405 71 -------------RNDVSWNSILGGLVRF--GSVDDACRVF--NQMP---KRSLVSWVVLISGFAQNGRPKEALALFREM 130 (511)
Q Consensus 71 -------------~~~~~~~~li~~~~~~--g~~~~A~~~~--~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 130 (511)
|+..+...-+.+|+.+ ++-..|..+| -+.. ..|+.....+...+...|+.++|...|++.
T Consensus 179 e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~ 258 (564)
T KOG1174|consen 179 EINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSST 258 (564)
T ss_pred hhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHH
Confidence 1112223334444443 3333333333 2222 246778888999999999999999999888
Q ss_pred HHCCCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---Cee
Q 010405 131 QSLDLEPNSA-ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK---DVS 206 (511)
Q Consensus 131 ~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~ 206 (511)
+.. .|+.. ......-.+.+.|+.+....+...+.... ......|-.-........+++.|+.+-++..+. ++.
T Consensus 259 ~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~ 335 (564)
T KOG1174|consen 259 LCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHE 335 (564)
T ss_pred hhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccch
Confidence 764 34332 22223334567778877777766665542 112222222233344567788888888777653 334
Q ss_pred ehHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHH-H
Q 010405 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISP-DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMV-D 284 (511)
Q Consensus 207 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li-~ 284 (511)
.+-.-...+.+.|++++|.-.|+..+.. .| +...|..|+.+|...|.+.+|.-.-+...+ -++.+..+.+.+. .
T Consensus 336 alilKG~lL~~~~R~~~A~IaFR~Aq~L--ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~ 411 (564)
T KOG1174|consen 336 ALILKGRLLIALERHTQAVIAFRTAQML--APYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTL 411 (564)
T ss_pred HHHhccHHHHhccchHHHHHHHHHHHhc--chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--Hhhcchhhhhhhcce
Confidence 4444455677888888888888887764 43 567888888888888888888777666654 2344555555442 2
Q ss_pred HHHHc-CCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHH
Q 010405 285 LLGRA-GLLEEAENFIASM-PMKPDNV-IWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361 (511)
Q Consensus 285 ~~~~~-g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 361 (511)
.+.-. -.-++|.+++++. .++|+-. ..+.+...|...|..+.++.++++.+...|++ ...+.|++.+...+.+++|
T Consensus 412 V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~a 490 (564)
T KOG1174|consen 412 VLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKA 490 (564)
T ss_pred eeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHH
Confidence 23222 2246777777765 6667543 55666677888888888888888888888854 6778888888888888888
Q ss_pred HHHHHHHHhC
Q 010405 362 EEVRKTMRKR 371 (511)
Q Consensus 362 ~~~~~~m~~~ 371 (511)
.+.|......
T Consensus 491 m~~y~~ALr~ 500 (564)
T KOG1174|consen 491 MEYYYKALRQ 500 (564)
T ss_pred HHHHHHHHhc
Confidence 8887766543
No 67
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.15 E-value=5.4e-09 Score=98.46 Aligned_cols=91 Identities=15% Similarity=-0.029 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CeeehHHHHHHHHHc
Q 010405 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD--K-DVSAYTSAIFGLAMN 218 (511)
Q Consensus 142 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~ 218 (511)
|..+...+...|+.++|...|++.++.. +.+...|+.+...|...|++++|.+.|++..+ | +..+|..+...+...
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~ 145 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG 145 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 4444444445555555555555544442 22344444444444555555544444444432 1 223344444444444
Q ss_pred CChHHHHHHHHHHHh
Q 010405 219 GHSIEAFELFENMKS 233 (511)
Q Consensus 219 g~~~~A~~~~~~m~~ 233 (511)
|++++|++.|++..+
T Consensus 146 g~~~eA~~~~~~al~ 160 (296)
T PRK11189 146 GRYELAQDDLLAFYQ 160 (296)
T ss_pred CCHHHHHHHHHHHHH
Confidence 444444444444443
No 68
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.14 E-value=1.2e-08 Score=100.50 Aligned_cols=239 Identities=13% Similarity=0.141 Sum_probs=165.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC----------CChh-HHHHHHHHHHHCCChhHHHHHHHHHHHC-----C-CC
Q 010405 74 VSWNSILGGLVRFGSVDDACRVFNQMPK----------RSLV-SWVVLISGFAQNGRPKEALALFREMQSL-----D-LE 136 (511)
Q Consensus 74 ~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~ 136 (511)
.+...|..+|...|+++.|..+|+...+ +.+. ..+.+...|...+++++|..+|+++... | ..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3455588999999999999999987643 2222 3455778899999999999999998652 2 11
Q ss_pred C-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCccH-HHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeeh
Q 010405 137 P-NSAILVSLLSACAQLGALDYGNWVYSYIQKK-----C-IKLDS-ILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAY 208 (511)
Q Consensus 137 p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~ 208 (511)
| -..+++.|..+|.+.|++++|...++.+.+. | ..|.+ ...+.+...+...+++++|..+++
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q---------- 349 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQ---------- 349 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHH----------
Confidence 2 2457778888899999999999888776652 1 11222 133444555555566666655554
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhc----C-CCCC-HhHHHHH
Q 010405 209 TSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH----G-IKPE-LDHYACM 282 (511)
Q Consensus 209 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~-~~p~-~~~~~~l 282 (511)
.|++++.........--..+++.|...|.+.|++++|.++|+++.... + ..+. ...++.|
T Consensus 350 --------------~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~l 415 (508)
T KOG1840|consen 350 --------------KALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQL 415 (508)
T ss_pred --------------HHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHH
Confidence 333333321111100123578888888888899998888888877532 1 1222 4567888
Q ss_pred HHHHHHcCCHHHHHHHHHhC--------CCCCCH-HHHHHHHHHHHhcCchhHHHHHHHHHhh
Q 010405 283 VDLLGRAGLLEEAENFIASM--------PMKPDN-VIWGTLLGACRVHRNAEMGQRIGNMLIE 336 (511)
Q Consensus 283 i~~~~~~g~~~~A~~~~~~~--------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (511)
...|.+.+++.+|.++|.+. +..|+. .+|..|...|...|+++.|+++.+.+..
T Consensus 416 a~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 416 AEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 88899999988888888765 334554 4889999999999999999999999886
No 69
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.12 E-value=4.9e-08 Score=92.00 Aligned_cols=145 Identities=12% Similarity=-0.049 Sum_probs=96.7
Q ss_pred cCCHHHHHHHHhhCCC-----C--ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHH
Q 010405 86 FGSVDDACRVFNQMPK-----R--SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158 (511)
Q Consensus 86 ~g~~~~A~~~~~~~~~-----~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 158 (511)
.+..+.+..-+.++.. + ....|..+...|...|+.++|...|++..+.. +.+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3455666666655542 1 13457777778888888888888888887754 33567888888888888888888
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeee-hHHH-HHHHHHcCChHHHHHHHHHHH
Q 010405 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSA-YTSA-IFGLAMNGHSIEAFELFENMK 232 (511)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~-~~~l-i~~~~~~g~~~~A~~~~~~m~ 232 (511)
...++.+++.. +.+..++..+..+|...|++++|.+.|+...+.+... +..+ ...+...++.++|+..|.+..
T Consensus 118 ~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 118 YEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 88888888764 3346677778888888888888888888766422211 1111 112234566777777776544
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.09 E-value=5.9e-09 Score=93.19 Aligned_cols=228 Identities=11% Similarity=0.095 Sum_probs=183.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 010405 76 WNSILGGLVRFGSVDDACRVFNQMPK--RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153 (511)
Q Consensus 76 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 153 (511)
-+.+..+|.+.|-+.+|++.|+...+ |-+.||-.|-..|.+..++..|+.+|.+-++. .+-|........+.+...+
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHH
Confidence 36788999999999999999987653 67789999999999999999999999888764 2334444456778888999
Q ss_pred CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHH
Q 010405 154 ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFEN 230 (511)
Q Consensus 154 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 230 (511)
+.+.|.++++...+.. +.++.....+...|.-.++.+.|+.+|+++.+ .+...|+.+.-+|.-.++++-++.-|++
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 9999999999998874 45666666777788888999999999998765 5677899999999999999999999998
Q ss_pred HHhCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC
Q 010405 231 MKSKGISPD--SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKPD 307 (511)
Q Consensus 231 m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 307 (511)
.+..--.|+ ...|-.+.......|++..|.+.|+.... .-......++.|.-.-.+.|++++|..+++.. ...|+
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 876544454 34677777777888999999999998876 33344678888888888899999999988876 33454
No 71
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=9.8e-07 Score=85.42 Aligned_cols=344 Identities=13% Similarity=0.082 Sum_probs=191.0
Q ss_pred HHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHccCCCCChhHHHHHHHHH--HhcCCHHHH
Q 010405 18 IQFYSVCGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGL--VRFGSVDDA 92 (511)
Q Consensus 18 i~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~--~~~g~~~~A 92 (511)
++.+...|++++|.+.-+++. +.|...+..-+-++.+.+++++|+.+.+.-...+......+=.+| -+.+..++|
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dea 98 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEA 98 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHH
Confidence 577788888999988877655 345666777777788888888888665544321111111022333 345666666
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCC----------------------------CCCHhHHHH
Q 010405 93 CRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDL----------------------------EPNSAILVS 144 (511)
Q Consensus 93 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----------------------------~p~~~t~~~ 144 (511)
...++.....+..+...-...+.+.|++++|+++|+.+.+.+. .| ..+|..
T Consensus 99 lk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~-e~syel 177 (652)
T KOG2376|consen 99 LKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVP-EDSYEL 177 (652)
T ss_pred HHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCC-cchHHH
Confidence 6666644443443444445556666666666666666533221 11 113332
Q ss_pred HHH---HHHhcCCHHHHHHHHHHHHHcCC-------C------ccH-HHHHHHHHHHHhcCCHHHHHHHHHhcCCC---C
Q 010405 145 LLS---ACAQLGALDYGNWVYSYIQKKCI-------K------LDS-ILCAALIDMYAKCGSIDLAMQVFHSYGDK---D 204 (511)
Q Consensus 145 ll~---~~~~~~~~~~a~~~~~~~~~~~~-------~------~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~ 204 (511)
+.+ .+...|++.+|+++++...+.+. . .+. ..-.-|.-++...|+.++|.+++...... |
T Consensus 178 ~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D 257 (652)
T KOG2376|consen 178 LYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPAD 257 (652)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCC
Confidence 222 23455666666666666632110 0 000 01112333445566666666666544321 1
Q ss_pred e-------------------------------------------------------------------------------
Q 010405 205 V------------------------------------------------------------------------------- 205 (511)
Q Consensus 205 ~------------------------------------------------------------------------------- 205 (511)
.
T Consensus 258 ~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~ 337 (652)
T KOG2376|consen 258 EPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMS 337 (652)
T ss_pred chHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccC
Confidence 1
Q ss_pred --eehHHHHHHHH--HcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHH--------HchhhcC
Q 010405 206 --SAYTSAIFGLA--MNGHSIEAFELFENMKSKGISPD--SISYIAVLSACSHLGWVEKGFYYFH--------SMFDVHG 271 (511)
Q Consensus 206 --~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~--------~~~~~~~ 271 (511)
..+.+++.... +...+.+|.+++...-+. .|. .......+......|+++.|.+++. .+.+ .+
T Consensus 338 p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~-~~ 414 (652)
T KOG2376|consen 338 PESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE-AK 414 (652)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh-hc
Confidence 00111111110 111233344444433332 222 2233344455566788888888888 4443 23
Q ss_pred CCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCc
Q 010405 272 IKPELDHYACMVDLLGRAGLLEEAENFIASM--------PMKPD-NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD 342 (511)
Q Consensus 272 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 342 (511)
.. +.+...++..+.+.++-+-|..++.+. .-.+. ..+|.-+...-.++|+-++|...++++.+.+|++.
T Consensus 415 ~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~ 492 (652)
T KOG2376|consen 415 HL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDT 492 (652)
T ss_pred cC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchH
Confidence 33 445566777888887766666665544 11121 22344444445677999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHHHH
Q 010405 343 GRYILLSNIYVETLKGENAEEVRKTM 368 (511)
Q Consensus 343 ~~~~~l~~~~~~~g~~~~A~~~~~~m 368 (511)
.+...++.+|++. +.+.|..+-+.+
T Consensus 493 ~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 493 DLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 9999999999887 778887776544
No 72
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=4.6e-07 Score=85.63 Aligned_cols=219 Identities=14% Similarity=0.048 Sum_probs=175.0
Q ss_pred HHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 010405 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDL 192 (511)
Q Consensus 113 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 192 (511)
-+.-.|+...|...|+........++. .|.-+..+|....+.++..+.|..+.+.+ +-++.+|.--..++.-.+++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHH
Confidence 345578999999999999887544433 37778888999999999999999999986 4466777778888888999999
Q ss_pred HHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhh
Q 010405 193 AMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDV 269 (511)
Q Consensus 193 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 269 (511)
|..-|++... .++.+|-.+..+..+.+++++++..|++.+.. ++-....|+.....+...++++.|.+.|+..++
T Consensus 413 A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~- 490 (606)
T KOG0547|consen 413 AIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE- 490 (606)
T ss_pred HHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh-
Confidence 9999998876 35567777777778899999999999999876 454577888899999999999999999999886
Q ss_pred cCCCCC---------HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcC
Q 010405 270 HGIKPE---------LDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338 (511)
Q Consensus 270 ~~~~p~---------~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 338 (511)
+.|+ +.+.-+++..- -.+++..|.+++++. .+.| ....+.+|...-.+.|+.++|+++|++...+-
T Consensus 491 --LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 491 --LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred --hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3333 22222222222 348999999999987 6666 45688889999999999999999999988753
No 73
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.03 E-value=1.8e-07 Score=93.26 Aligned_cols=255 Identities=10% Similarity=0.042 Sum_probs=143.3
Q ss_pred HHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc-----C
Q 010405 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC-----G 188 (511)
Q Consensus 114 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~-----g 188 (511)
+...|++++|++.+..-... +......+......+.+.|+.++|..++..+++.+ |.+...|..|..+..-. .
T Consensus 14 l~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccccc
Confidence 34445555555555443221 22222233333444455555555555555555543 22333344444333111 1
Q ss_pred CHHHHHHHHHhcCC--CCeeehHHHHHHHHHcCCh-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 010405 189 SIDLAMQVFHSYGD--KDVSAYTSAIFGLAMNGHS-IEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHS 265 (511)
Q Consensus 189 ~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 265 (511)
+.+...++|+++.. |...+...+.-.+.....+ ..+..++..+...|++ .+|..|-..|......+-..+++..
T Consensus 92 ~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~ 168 (517)
T PF12569_consen 92 DVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEE 168 (517)
T ss_pred cHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHH
Confidence 34444455554433 1111111111111111122 2445566666777765 3455555556655555555555544
Q ss_pred chhhc-------------CCCCCHh--HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHH
Q 010405 266 MFDVH-------------GIKPELD--HYACMVDLLGRAGLLEEAENFIASM-PMKPD-NVIWGTLLGACRVHRNAEMGQ 328 (511)
Q Consensus 266 ~~~~~-------------~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~ 328 (511)
..... .-+|+.. ++..+...|...|++++|++++++. ...|+ +..|..-...+...|++++|.
T Consensus 169 ~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa 248 (517)
T PF12569_consen 169 YVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAA 248 (517)
T ss_pred HHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 43211 1134432 4456677888899999999999876 55675 446666677788999999999
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010405 329 RIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKI 373 (511)
Q Consensus 329 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 373 (511)
+..+.+..+++.|-..-.-.+..+.++|+.++|.+++....+.+.
T Consensus 249 ~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 249 EAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 999999999988866666777778899999999999988877665
No 74
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.00 E-value=2.8e-07 Score=79.02 Aligned_cols=196 Identities=13% Similarity=0.036 Sum_probs=112.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHc
Q 010405 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMN 218 (511)
Q Consensus 142 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 218 (511)
...|.-.|...|+...|+.-++++++.. |.+..++..+...|.+.|+.+.|.+.|++... .+....|....-+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 3344445555555555555555555543 22344555555555556666666555554432 3445555555556666
Q ss_pred CChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC-HhHHHHHHHHHHHcCCHHHHH
Q 010405 219 GHSIEAFELFENMKSKGISP-DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE-LDHYACMVDLLGRAGLLEEAE 296 (511)
Q Consensus 219 g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~ 296 (511)
|++++|...|++....-.-| -..||..+.-+..+.|+.+.|..+|++..+ ..|+ ......+.....+.|++..|.
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHH
Confidence 66666666666665432111 234566666566666777777777766665 2232 445556666666777777777
Q ss_pred HHHHhC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC
Q 010405 297 NFIASM--PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH 341 (511)
Q Consensus 297 ~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 341 (511)
.+++.. ...++..+..-.|..-...||.+.+.+.-.++.+..|..
T Consensus 194 ~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 194 LYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 666665 223555555555555666677777777666666666654
No 75
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=1e-06 Score=81.68 Aligned_cols=322 Identities=10% Similarity=0.006 Sum_probs=215.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHccCCC----------------------CChh----------HHHHHHHHHHhc--CC
Q 010405 43 VSWNSMINGYVRNGEILEGLKLFDKMPQ----------------------RNDV----------SWNSILGGLVRF--GS 88 (511)
Q Consensus 43 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----------------------~~~~----------~~~~li~~~~~~--g~ 88 (511)
..-.-.+.+|...++-+.|.....+.+. |.+. .--..|.+..+. ..
T Consensus 98 e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g 177 (564)
T KOG1174|consen 98 EQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNG 177 (564)
T ss_pred HHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcc
Confidence 3345677888888999999988887763 1111 112233333332 12
Q ss_pred HHHHHHHHhhCCCCChh-HHHHHHHHH--HHCCChhHHHHHHHHHHHC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 010405 89 VDDACRVFNQMPKRSLV-SWVVLISGF--AQNGRPKEALALFREMQSL-DLEPNSAILVSLLSACAQLGALDYGNWVYSY 164 (511)
Q Consensus 89 ~~~A~~~~~~~~~~~~~-~~~~li~~~--~~~g~~~~A~~~~~~m~~~-~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 164 (511)
.+.+-.......-++.. +...-+.++ +..++...|..++--+... -++-|......+...+...|+.++|...|++
T Consensus 178 ~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~ 257 (564)
T KOG1174|consen 178 NEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSS 257 (564)
T ss_pred hhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHH
Confidence 33333333333333332 222334444 4456666666655444332 2566788889999999999999999999999
Q ss_pred HHHcCCCccH-HHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH
Q 010405 165 IQKKCIKLDS-ILCAALIDMYAKCGSIDLAMQVFHSYGDK---DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240 (511)
Q Consensus 165 ~~~~~~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 240 (511)
..-.+ |+. .......-.+...|++++...+...+... ....|-.-........+++.|+.+-.+.++.... +.
T Consensus 258 ~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~ 334 (564)
T KOG1174|consen 258 TLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NH 334 (564)
T ss_pred HhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cc
Confidence 87653 332 22222233345678888887777766543 3445666666677788999999999888775322 34
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHH-H
Q 010405 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP-ELDHYACMVDLLGRAGLLEEAENFIASM-P-MKPDNVIWGTLL-G 316 (511)
Q Consensus 241 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll-~ 316 (511)
..|..-..++...|++++|.-.|+.... +.| +...|.-|+..|...|++.||.-+-+.. . +..+..+...+. .
T Consensus 335 ~alilKG~lL~~~~R~~~A~IaFR~Aq~---Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~ 411 (564)
T KOG1174|consen 335 EALILKGRLLIALERHTQAVIAFRTAQM---LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTL 411 (564)
T ss_pred hHHHhccHHHHhccchHHHHHHHHHHHh---cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcce
Confidence 4555555678889999999999998865 554 5889999999999999999998765543 1 223444444331 2
Q ss_pred HH-HhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 317 AC-RVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 317 ~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
.| ....--++|.+++++.+.++|+-..+.+.++..+...|+.+++..++++-..
T Consensus 412 V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~ 466 (564)
T KOG1174|consen 412 VLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI 466 (564)
T ss_pred eeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh
Confidence 22 2333458899999999999999988999999999999999999999987654
No 76
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.96 E-value=7.9e-07 Score=88.80 Aligned_cols=126 Identities=16% Similarity=0.111 Sum_probs=87.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 010405 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE-LDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGAC 318 (511)
Q Consensus 242 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 318 (511)
++..+...|...|+.++|.++.+..++ ..|+ +..|..-...|-+.|++.+|.+.++.. ...+ |-..-+-....+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 445556667788888888888888876 2454 677888888888888888888888776 3333 444444455667
Q ss_pred HhcCchhHHHHHHHHHhhcC--CCC-------chhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 319 RVHRNAEMGQRIGNMLIESD--QNH-------DGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~--p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
.+.|+.++|++++....+.+ |.. .....-.+.+|.+.|++..|++-+....+
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88888888888888877643 221 11223557888888988888877765543
No 77
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.96 E-value=8.7e-07 Score=80.13 Aligned_cols=300 Identities=11% Similarity=0.063 Sum_probs=166.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHccCCCCChhHHHHHH---HHHHhcCCHHHHHHHHhhCCC--CChh-HHHHHHHHHHHCC
Q 010405 45 WNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSIL---GGLVRFGSVDDACRVFNQMPK--RSLV-SWVVLISGFAQNG 118 (511)
Q Consensus 45 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g 118 (511)
---+.+.+...|++..|+.-|....+-|+..|.++. ..|...|+-..|+.-|++..+ ||-. +--.-...+.++|
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcc
Confidence 344566677777777777777777776666666654 356666776666666666543 3322 1112234566777
Q ss_pred ChhHHHHHHHHHHHCCCCCC------------HhH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 010405 119 RPKEALALFREMQSLDLEPN------------SAI--LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMY 184 (511)
Q Consensus 119 ~~~~A~~~~~~m~~~~~~p~------------~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 184 (511)
.+++|..-|+..++....-+ ... ....+..+...|+...|+.....+++.. +-|...+..-..+|
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCY 199 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHH
Confidence 88888877777766532110 011 1222334455677777777777777763 44667777777778
Q ss_pred HhcCCHHHHHHHHHhcC---CCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010405 185 AKCGSIDLAMQVFHSYG---DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261 (511)
Q Consensus 185 ~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 261 (511)
...|++..|+.-++... ..+...+--+-..+...|+.+.++...++.++ +.||....-. .-..+....+
T Consensus 200 i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~------~YKklkKv~K 271 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFP------FYKKLKKVVK 271 (504)
T ss_pred HhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHH------HHHHHHHHHH
Confidence 88888877766555443 34555666666667777777777777777665 3555432111 0011111122
Q ss_pred HHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-----HHHHHHHHHHHhcCchhHHHHHHHHHh
Q 010405 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKPDN-----VIWGTLLGACRVHRNAEMGQRIGNMLI 335 (511)
Q Consensus 262 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~ 335 (511)
.+..|.+ ..+.++|.++.+-.+.. ...|.. ..+..+-.++...+++.+|++...+++
T Consensus 272 ~les~e~-----------------~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL 334 (504)
T KOG0624|consen 272 SLESAEQ-----------------AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL 334 (504)
T ss_pred HHHHHHH-----------------HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH
Confidence 2222221 12233444444333332 223321 122233344555566666666666666
Q ss_pred hcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 336 ESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 336 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
+.+|+|..++.--+.+|.-...+|+|+.-++...+
T Consensus 335 ~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 335 DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 66666666666666666666666666665555544
No 78
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.96 E-value=1.6e-08 Score=97.26 Aligned_cols=220 Identities=11% Similarity=0.006 Sum_probs=173.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CeeehHHHHHHHHHcCChHHH
Q 010405 148 ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK---DVSAYTSAIFGLAMNGHSIEA 224 (511)
Q Consensus 148 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A 224 (511)
-+.+.|++.+|.-.|+..++.. |-+...|.-|...-...++-..|+..+++..+- |..+.-+|.-.|...|.-.+|
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHH
Confidence 3467788899998999888875 557888888888888888888888888887763 455666677788888888899
Q ss_pred HHHHHHHHhCCCC--------CCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHH
Q 010405 225 FELFENMKSKGIS--------PDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAE 296 (511)
Q Consensus 225 ~~~~~~m~~~g~~--------p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 296 (511)
+..++..+....+ ++..+-.. ........+....++|-.+....+..+|+.++.+|.-.|--.|.+++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 9998887654211 00000000 1222333455666777777765676688889999999999999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 297 NFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 297 ~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
+-|+.+ .++| |...||-|...+....+.++|+..|.+++++.|.-..+...|+..|...|.+++|.+.|=....
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999987 6777 6679999999999999999999999999999999999999999999999999999998865543
No 79
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.94 E-value=2.3e-06 Score=83.51 Aligned_cols=258 Identities=14% Similarity=-0.030 Sum_probs=134.4
Q ss_pred HHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 010405 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ----LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC 187 (511)
Q Consensus 112 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 187 (511)
..+...|++++|.+.+++..+.. +.|...+.. ...+.. .+..+.+.+.+... ....+........+...+...
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHc
Confidence 34556677777777776666542 223323331 112222 23333333333331 111122233444555666677
Q ss_pred CCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHhccCCHHHHHH
Q 010405 188 GSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGI-SPDS--ISYIAVLSACSHLGWVEKGFY 261 (511)
Q Consensus 188 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~~~~~~g~~~~a~~ 261 (511)
|++++|.+.+++..+ .+...+..+...|...|++++|..++++...... .|+. ..|..+...+...|+.++|..
T Consensus 128 G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 128 GQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 777777777776554 2344566666677777777777777776665321 1222 234455666777777777777
Q ss_pred HHHHchhhcCCCCCHhHH-H--HHHHHHHHcCCHHHHHHH---HHh---C-CCCCCHHHHHHHHHHHHhcCchhHHHHHH
Q 010405 262 YFHSMFDVHGIKPELDHY-A--CMVDLLGRAGLLEEAENF---IAS---M-PMKPDNVIWGTLLGACRVHRNAEMGQRIG 331 (511)
Q Consensus 262 ~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~---~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 331 (511)
+++.........+..... + .++.-+...|..+.+.+. ... . +.............++...|+.+.|...+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 777765311111111111 1 222223333322222221 111 1 11111122224555677888888888888
Q ss_pred HHHhhcC-C---C-----CchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 332 NMLIESD-Q---N-----HDGRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 332 ~~~~~~~-p---~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
+.+.... . . ........+.++...|++++|.+.+.......
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8877621 1 1 23444566777889999999999998776543
No 80
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.94 E-value=5.7e-07 Score=77.15 Aligned_cols=192 Identities=13% Similarity=0.039 Sum_probs=151.7
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 010405 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYA 185 (511)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 185 (511)
+...|.-+|.+.|+...|..-+++.++.+ +-+..++..+...|...|..+.|.+.|+++++.. +-+-.+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 45667788889999999999888888864 4466788888888889999999999998888874 446678888888899
Q ss_pred hcCCHHHHHHHHHhcCC-C----CeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 010405 186 KCGSIDLAMQVFHSYGD-K----DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260 (511)
Q Consensus 186 ~~g~~~~A~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 260 (511)
..|++++|...|++... | -..+|..+.-+..+.|+.+.|...|++.++.... ...+...+.......|+.-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 99999999999987764 3 3457888888888899999999999988875322 3456667777888889999999
Q ss_pred HHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 010405 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM 302 (511)
Q Consensus 261 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 302 (511)
.+++.... +..++..+.-..|..-.+.|+-+.|-+.=..+
T Consensus 194 ~~~~~~~~--~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 194 LYLERYQQ--RGGAQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHHHHHh--cccccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 99888876 44488888888888888888888776654443
No 81
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.94 E-value=2.6e-06 Score=83.47 Aligned_cols=349 Identities=15% Similarity=0.106 Sum_probs=208.4
Q ss_pred HHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHccCCC---CChhHHHHHHHHHHhcCCHHHHH
Q 010405 20 FYSVCGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ---RNDVSWNSILGGLVRFGSVDDAC 93 (511)
Q Consensus 20 ~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~ 93 (511)
.+...|+-++|........ ..+.+.|..+.-.+....++++|+++|+.... .|...+.-+--.-++.|+++...
T Consensus 50 ~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 50 TLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred hhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHH
Confidence 3444577777777666444 34567899888888888899999999988764 45556665555556667766665
Q ss_pred HHHhhCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCC-CCCCHhHHHHHH------HHHHhcCCHHHHHHHHH
Q 010405 94 RVFNQMPK---RSLVSWVVLISGFAQNGRPKEALALFREMQSLD-LEPNSAILVSLL------SACAQLGALDYGNWVYS 163 (511)
Q Consensus 94 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~t~~~ll------~~~~~~~~~~~a~~~~~ 163 (511)
..-.+..+ ..-..|..++.++.-.|+...|..+.++..+.. -.|+...+.-.. ......|.++.|.+.+.
T Consensus 130 ~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~ 209 (700)
T KOG1156|consen 130 ETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLL 209 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 55544433 344678888888889999999999998887654 246655554332 23456677777777665
Q ss_pred HHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCeeehHHHH-HHHHHcCChHHHH-HHHHH---------
Q 010405 164 YIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD--KDVSAYTSAI-FGLAMNGHSIEAF-ELFEN--------- 230 (511)
Q Consensus 164 ~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li-~~~~~~g~~~~A~-~~~~~--------- 230 (511)
.-... +......-.+-.+.+.+.+++++|..++..+.. ||...|.-.. .++.+-.+..+++ .+|..
T Consensus 210 ~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e 288 (700)
T KOG1156|consen 210 DNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHE 288 (700)
T ss_pred hhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccc
Confidence 54433 222333445567778889999999999998876 4444444332 2332222222222 33333
Q ss_pred -------------------------HHhCCCCCCHHHHHHHHHHHhccCCHHH----HHHHHHHchhhcC----------
Q 010405 231 -------------------------MKSKGISPDSISYIAVLSACSHLGWVEK----GFYYFHSMFDVHG---------- 271 (511)
Q Consensus 231 -------------------------m~~~g~~p~~~t~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~---------- 271 (511)
+.+.|++| +|..+.+.|-.....+- +..+...+.. .|
T Consensus 289 ~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~-~~~f~~~D~~~~ 364 (700)
T KOG1156|consen 289 CPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSG-TGMFNFLDDGKQ 364 (700)
T ss_pred cchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhccc-ccCCCccccccc
Confidence 33333322 22222222222221111 1112222211 11
Q ss_pred CCCCHhH--HHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHH
Q 010405 272 IKPELDH--YACMVDLLGRAGLLEEAENFIASM-PMKPDNV-IWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYIL 347 (511)
Q Consensus 272 ~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 347 (511)
-+|.... +-.++..+-+.|+++.|...++.. .-.|+.+ .|..-...+...|++++|...++++.+++..|...-.-
T Consensus 365 E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsK 444 (700)
T KOG1156|consen 365 EPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSK 444 (700)
T ss_pred CCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHH
Confidence 0344333 345677777888888888888776 5456554 34344455777788888888888888876655322224
Q ss_pred HHHHHHHcCCchHHHHHHHHHHhCCC
Q 010405 348 LSNIYVETLKGENAEEVRKTMRKRKI 373 (511)
Q Consensus 348 l~~~~~~~g~~~~A~~~~~~m~~~g~ 373 (511)
-+.-..++.+.++|.++.....+.|.
T Consensus 445 cAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 445 CAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHccccHHHHHHHHHhhhccc
Confidence 45555677888888888877766654
No 82
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.92 E-value=7.2e-06 Score=80.30 Aligned_cols=346 Identities=14% Similarity=0.167 Sum_probs=222.0
Q ss_pred chHHHHHHHHHhcCChHHHHHHHhcCC-----CCChhHHHHHHHHHHHcCChHHHHHHHccCCCCChhHHHHHHHHHHhc
Q 010405 12 FVKNSLIQFYSVCGRVRDARWVFDESD-----DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRF 86 (511)
Q Consensus 12 ~~~~~li~~~~~~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~ 86 (511)
..|-.-+....++|++..-+..|++.. ..-...|...+.-..+.|-++-++.+|++..+-++..-+--|..+++.
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~ 182 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKS 182 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 345555667778899999999998533 234457888898888999999999999999887777788889999999
Q ss_pred CCHHHHHHHHhhCCCC----------ChhHHHHHHHHHHHCCChhH---HHHHHHHHHHCCCCCC--HhHHHHHHHHHHh
Q 010405 87 GSVDDACRVFNQMPKR----------SLVSWVVLISGFAQNGRPKE---ALALFREMQSLDLEPN--SAILVSLLSACAQ 151 (511)
Q Consensus 87 g~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~p~--~~t~~~ll~~~~~ 151 (511)
+++++|.+.+...... +-..|+.+-...+++-+.-. ...+++.+... -+| ...|.+|..-|.+
T Consensus 183 d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr 260 (835)
T KOG2047|consen 183 DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIR 260 (835)
T ss_pred cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHH
Confidence 9999999998887532 23456666666665544332 22344444322 234 3567888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc----------------C------CHHHHHHHHHhcCCC------
Q 010405 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC----------------G------SIDLAMQVFHSYGDK------ 203 (511)
Q Consensus 152 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~----------------g------~~~~A~~~~~~~~~~------ 203 (511)
.|.++.|..++++.++.- ..+.-++.+.++|+.- | +++-...-|+.+..+
T Consensus 261 ~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lN 338 (835)
T KOG2047|consen 261 SGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLN 338 (835)
T ss_pred hhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHH
Confidence 888888888888877652 2333344444444321 1 122223334433321
Q ss_pred ---------CeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHhccCCHHHHHHHHHHchh
Q 010405 204 ---------DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD------SISYIAVLSACSHLGWVEKGFYYFHSMFD 268 (511)
Q Consensus 204 ---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 268 (511)
++..|..-+. ...|+..+-...|.+..+. +.|- ...|..+...|-..|+++.|..+|++..+
T Consensus 339 sVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~ 415 (835)
T KOG2047|consen 339 SVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATK 415 (835)
T ss_pred HHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhc
Confidence 2223333322 2346677777888877654 3332 23577777888889999999999988876
Q ss_pred hcCCCCC---HhHHHHHHHHHHHcCCHHHHHHHHHhC---CCC-----------------CCHHHHHHHHHHHHhcCchh
Q 010405 269 VHGIKPE---LDHYACMVDLLGRAGLLEEAENFIASM---PMK-----------------PDNVIWGTLLGACRVHRNAE 325 (511)
Q Consensus 269 ~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~-----------------p~~~~~~~ll~~~~~~g~~~ 325 (511)
-..+.- ..+|-...++=.+..+++.|+++.+.. |.. .+...|...+...-..|-++
T Consensus 416 -V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 416 -VPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred -CCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 222211 445666667777888888888888876 211 12345665665555667777
Q ss_pred HHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 010405 326 MGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVR 365 (511)
Q Consensus 326 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 365 (511)
....++++++++.-..|......+..+-...-++++.+++
T Consensus 495 stk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~Y 534 (835)
T KOG2047|consen 495 STKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAY 534 (835)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 7777777777765544555555555555555566666666
No 83
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.89 E-value=7.1e-06 Score=90.57 Aligned_cols=356 Identities=12% Similarity=0.001 Sum_probs=226.8
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCChhH--HHHHHHHHHHcCChHHHHHHHccCCC----CChhHHHHHHHHHHhcCCHH
Q 010405 17 LIQFYSVCGRVRDARWVFDESDDLDVVS--WNSMINGYVRNGEILEGLKLFDKMPQ----RNDVSWNSILGGLVRFGSVD 90 (511)
Q Consensus 17 li~~~~~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~ 90 (511)
....|...|++.+|..........+... ...........|+++.+...++.+.. .+..........+...|+++
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~ 426 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYS 426 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHH
Confidence 3445556677777666665554332211 11222345567888888888877742 23333344455667789999
Q ss_pred HHHHHHhhCC----CCC------h--hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH----hHHHHHHHHHHhcCC
Q 010405 91 DACRVFNQMP----KRS------L--VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS----AILVSLLSACAQLGA 154 (511)
Q Consensus 91 ~A~~~~~~~~----~~~------~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~~~ 154 (511)
+|...++... ..+ . .....+...+...|++++|...+++....-...+. .+.+.+...+...|+
T Consensus 427 ~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~ 506 (903)
T PRK04841 427 EVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE 506 (903)
T ss_pred HHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC
Confidence 9888887642 111 1 12223345567899999999999987763111121 244556667788999
Q ss_pred HHHHHHHHHHHHHc----CC-CccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC-------CC----eeehHHHHHHHHHc
Q 010405 155 LDYGNWVYSYIQKK----CI-KLDSILCAALIDMYAKCGSIDLAMQVFHSYGD-------KD----VSAYTSAIFGLAMN 218 (511)
Q Consensus 155 ~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~ 218 (511)
++.|...+.+.... |. .....+...+...+...|++++|...+++... ++ ...+..+...+...
T Consensus 507 ~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 586 (903)
T PRK04841 507 LARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW 586 (903)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh
Confidence 99999999887753 21 11233556677788899999999998876543 11 11234455567778
Q ss_pred CChHHHHHHHHHHHhC--CCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHH-----HHHHHHHHHc
Q 010405 219 GHSIEAFELFENMKSK--GISPD--SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHY-----ACMVDLLGRA 289 (511)
Q Consensus 219 g~~~~A~~~~~~m~~~--g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~ 289 (511)
|++++|...+++.... ...+. ...+..+.......|+.++|...+...............+ ...+..+...
T Consensus 587 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (903)
T PRK04841 587 ARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMT 666 (903)
T ss_pred cCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHC
Confidence 9999999999887653 11222 2344445567778999999999988876421111111111 1123445668
Q ss_pred CCHHHHHHHHHhCCC-C-CCHH----HHHHHHHHHHhcCchhHHHHHHHHHhhcC------CCCchhHHHHHHHHHHcCC
Q 010405 290 GLLEEAENFIASMPM-K-PDNV----IWGTLLGACRVHRNAEMGQRIGNMLIESD------QNHDGRYILLSNIYVETLK 357 (511)
Q Consensus 290 g~~~~A~~~~~~~~~-~-p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~ 357 (511)
|+.+.|...+..... . .... .+..+..++...|+.++|...++++.... +....++..++.+|.+.|+
T Consensus 667 g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~ 746 (903)
T PRK04841 667 GDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGR 746 (903)
T ss_pred CCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCC
Confidence 999999999877621 1 1111 13455566888999999999999988731 1123467788899999999
Q ss_pred chHHHHHHHHHHhCC
Q 010405 358 GENAEEVRKTMRKRK 372 (511)
Q Consensus 358 ~~~A~~~~~~m~~~g 372 (511)
.++|...+.+..+..
T Consensus 747 ~~~A~~~L~~Al~la 761 (903)
T PRK04841 747 KSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998887644
No 84
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.87 E-value=1.3e-07 Score=87.98 Aligned_cols=248 Identities=15% Similarity=0.102 Sum_probs=150.3
Q ss_pred HHhcCCHHHHHHHHhhCCC--C--ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHH
Q 010405 83 LVRFGSVDDACRVFNQMPK--R--SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158 (511)
Q Consensus 83 ~~~~g~~~~A~~~~~~~~~--~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 158 (511)
+.-.|++..+..-.+ ... + +.....-+.+++...|+++.++. +..... .|.......+...+....+-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 334567776665443 111 1 22344556677777887765443 333332 55555555554444433444444
Q ss_pred HHHHHHHHHcCCC-ccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 010405 159 NWVYSYIQKKCIK-LDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGIS 237 (511)
Q Consensus 159 ~~~~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 237 (511)
..-++........ .+..+......+|...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+. .
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~ 161 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--D 161 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--S
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 4444333322222 23334444445677788888888887765 45556666788888899999999999988864 3
Q ss_pred CCHHHHHHHHHHHhc----cCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHH
Q 010405 238 PDSISYIAVLSACSH----LGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIW 311 (511)
Q Consensus 238 p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 311 (511)
.| .+...+..++.. .+.+.+|..+|+++.+ ...+++.+.+.+..+....|++++|.+++++. ...| |+.+.
T Consensus 162 eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 162 ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 33 444445554432 3468889999999876 45677888888888888899999998888775 4344 45566
Q ss_pred HHHHHHHHhcCch-hHHHHHHHHHhhcCCCCc
Q 010405 312 GTLLGACRVHRNA-EMGQRIGNMLIESDQNHD 342 (511)
Q Consensus 312 ~~ll~~~~~~g~~-~~a~~~~~~~~~~~p~~~ 342 (511)
..++......|+. +.+.+.+.++....|.++
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 6777777777776 667788888888888764
No 85
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.86 E-value=7.5e-08 Score=89.53 Aligned_cols=243 Identities=12% Similarity=0.035 Sum_probs=164.4
Q ss_pred HHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 010405 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDL 192 (511)
Q Consensus 113 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 192 (511)
-+.-.|++..++.-.+ ........+......+.+++...|+.+.+. ..+.+.. .|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3445788888886555 322222234455667788888899876543 3333333 6666666666555544456677
Q ss_pred HHHHHHhcCCCCee---ehHHHH--HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHch
Q 010405 193 AMQVFHSYGDKDVS---AYTSAI--FGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMF 267 (511)
Q Consensus 193 A~~~~~~~~~~~~~---~~~~li--~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 267 (511)
+..-++........ .+..++ ..+...|++++|++++.+- .+.......+..+...++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777655432221 122233 3455679999999988642 355666677889999999999999999997
Q ss_pred hhcCCCCCHhHHHHHHHHH----HHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC
Q 010405 268 DVHGIKPELDHYACMVDLL----GRAGLLEEAENFIASM--PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH 341 (511)
Q Consensus 268 ~~~~~~p~~~~~~~li~~~----~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 341 (511)
+ +..|. +...+..++ .-.+.+.+|.-+|+++ ...+++.+.+.+..+....|++++|+++++++.+.+|.+
T Consensus 159 ~---~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~ 234 (290)
T PF04733_consen 159 Q---IDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND 234 (290)
T ss_dssp C---CSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH
T ss_pred h---cCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC
Confidence 6 44443 333344333 3334799999999998 344688888888899999999999999999999999999
Q ss_pred chhHHHHHHHHHHcCCc-hHHHHHHHHHHh
Q 010405 342 DGRYILLSNIYVETLKG-ENAEEVRKTMRK 370 (511)
Q Consensus 342 ~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~ 370 (511)
+.+...++.+....|+. +.+.+.+..++.
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 99999999999999998 667788888775
No 86
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.85 E-value=1.1e-05 Score=78.93 Aligned_cols=356 Identities=15% Similarity=0.155 Sum_probs=208.5
Q ss_pred chHHHHHHHHHhcCChHHHHHHHhcCCC--CChhHHHHHHHHHHHcCCh----------------------HHHHHHHcc
Q 010405 12 FVKNSLIQFYSVCGRVRDARWVFDESDD--LDVVSWNSMINGYVRNGEI----------------------LEGLKLFDK 67 (511)
Q Consensus 12 ~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~----------------------~~A~~~~~~ 67 (511)
+.|++|.+.|.+.|.+++|+++|++... ..+.-++.+-++|++-..- +-...-|+.
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~ 328 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFES 328 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHH
Confidence 5789999999999999999999986432 2333344444444432111 112222222
Q ss_pred CCC---------------CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------CC--hhHHHHHHHHHHHCCChhHH
Q 010405 68 MPQ---------------RNDVSWNSILGGLVRFGSVDDACRVFNQMPK-------RS--LVSWVVLISGFAQNGRPKEA 123 (511)
Q Consensus 68 m~~---------------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~--~~~~~~li~~~~~~g~~~~A 123 (511)
+.. .++..|..-+..| .|+..+-..+|.+..+ +. -..|-.+...|-.+|+.+.|
T Consensus 329 lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~a 406 (835)
T KOG2047|consen 329 LMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDA 406 (835)
T ss_pred HHhccchHHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHH
Confidence 221 1222333332222 3444444455544321 11 13578888888888888888
Q ss_pred HHHHHHHHHCCCCCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----------CCc------cHHHHHHHHHH
Q 010405 124 LALFREMQSLDLEPN---SAILVSLLSACAQLGALDYGNWVYSYIQKKC-----------IKL------DSILCAALIDM 183 (511)
Q Consensus 124 ~~~~~~m~~~~~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------~~~------~~~~~~~li~~ 183 (511)
..+|++..+...+-- ..+|......=.+..+++.|..+.+.+.... .++ +..+|..+++.
T Consensus 407 Rvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dl 486 (835)
T KOG2047|consen 407 RVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADL 486 (835)
T ss_pred HHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHH
Confidence 888888766432211 1233333333345566777777766654321 111 23344555666
Q ss_pred HHhcCCHHHHHHHHHhcCCCCeeehHHHHH---HHHHcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHh---ccCCH
Q 010405 184 YAKCGSIDLAMQVFHSYGDKDVSAYTSAIF---GLAMNGHSIEAFELFENMKSKGISPDSI-SYIAVLSACS---HLGWV 256 (511)
Q Consensus 184 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~---~~g~~ 256 (511)
--..|-++....+|+++.+--+.|=..++. .+-.+.-++++.+.|++-...=.-|+.. .|+..|.-+. ....+
T Consensus 487 eEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~kl 566 (835)
T KOG2047|consen 487 EESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKL 566 (835)
T ss_pred HHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCH
Confidence 666788888888888887644333222222 1224556788888887655442334432 4444444332 23468
Q ss_pred HHHHHHHHHchhhcCCCCCHh--HHHHHHHHHHHcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCchhHHHHH
Q 010405 257 EKGFYYFHSMFDVHGIKPELD--HYACMVDLLGRAGLLEEAENFIASM--PMKPD--NVIWGTLLGACRVHRNAEMGQRI 330 (511)
Q Consensus 257 ~~a~~~~~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~ll~~~~~~g~~~~a~~~ 330 (511)
+.|..+|++..+ |.+|... .|......=-+-|....|+.++++. .+++. ...|+..|.--...=-+..-..+
T Consensus 567 EraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~i 644 (835)
T KOG2047|consen 567 ERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREI 644 (835)
T ss_pred HHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHH
Confidence 999999999997 6776522 2222233334568888999999998 34443 34788777654444446677889
Q ss_pred HHHHhhcCCCCch--hHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010405 331 GNMLIESDQNHDG--RYILLSNIYVETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 331 ~~~~~~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 371 (511)
|+++++.-|++.. .....+.+-.+.|..+.|..++..-.+-
T Consensus 645 YekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 645 YEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 9999998776532 2335567778899999999999766553
No 87
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.85 E-value=1.3e-05 Score=72.97 Aligned_cols=353 Identities=10% Similarity=0.027 Sum_probs=200.5
Q ss_pred HHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHccCCCC---------------Chh----
Q 010405 17 LIQFYSVCGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQR---------------NDV---- 74 (511)
Q Consensus 17 li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------------~~~---- 74 (511)
+...|...|++++|..++.-+. .++...|-.|.-++--.|.+.+|..+-.+..+. |..
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~ 142 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILT 142 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHH
Confidence 3445556677777777776433 244555666666666667777777766666531 111
Q ss_pred ----------HHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHH-HHHHHHHCCChhHHHHHHHHHHHCCCCCCHhH
Q 010405 75 ----------SWNSILGGLVRFGSVDDACRVFNQMPK--RSLVSWVV-LISGFAQNGRPKEALALFREMQSLDLEPNSAI 141 (511)
Q Consensus 75 ----------~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 141 (511)
---+|.++.--.-.+++|.+++.+... |+....|. |.-+|.+..-++-+.+++.-.++. ++-+..+
T Consensus 143 fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA 221 (557)
T KOG3785|consen 143 FHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIA 221 (557)
T ss_pred HHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHH
Confidence 112233333333456777777777654 33344443 334566677777777777666553 2223333
Q ss_pred HHHHHHHHHhcCCHHHHHH--------------HHHHHHHcCC------C------c-----cHHHHHHHHHHHHhcCCH
Q 010405 142 LVSLLSACAQLGALDYGNW--------------VYSYIQKKCI------K------L-----DSILCAALIDMYAKCGSI 190 (511)
Q Consensus 142 ~~~ll~~~~~~~~~~~a~~--------------~~~~~~~~~~------~------~-----~~~~~~~li~~y~~~g~~ 190 (511)
.+.......+.=+-..|.+ ..+.+.++++ + | -+..--.|+--|.+.+++
T Consensus 222 ~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dV 301 (557)
T KOG3785|consen 222 KNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDV 301 (557)
T ss_pred HHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccH
Confidence 3333322222211111111 1122222211 0 0 012223355568889999
Q ss_pred HHHHHHHHhcCCCCeeehHHHHHHHHHcCC-------hHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHhccCCHHHHHHH
Q 010405 191 DLAMQVFHSYGDKDVSAYTSAIFGLAMNGH-------SIEAFELFENMKSKGISPDSIS-YIAVLSACSHLGWVEKGFYY 262 (511)
Q Consensus 191 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~ 262 (511)
++|..+.+.+...++.-|-.-.-.++..|+ ..-|.+.|+-.-.++..-|.+. -.++.+++.-..++|+.+.+
T Consensus 302 qeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~Y 381 (557)
T KOG3785|consen 302 QEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTY 381 (557)
T ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 999998887765444434333333444443 3345555544434444333321 22344455556779999999
Q ss_pred HHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCC-CC-CCHHHHHHHH-HHHHhcCchhHHHHHHHHHhhcCC
Q 010405 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP-MK-PDNVIWGTLL-GACRVHRNAEMGQRIGNMLIESDQ 339 (511)
Q Consensus 263 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~p 339 (511)
++.+.. +=...|...+ .+.++++..|.+.+|+++|-.+. .+ .|..+|.+++ .+|.+.+.++.|-.++-++ ..|
T Consensus 382 lnSi~s-YF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~ 457 (557)
T KOG3785|consen 382 LNSIES-YFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT--NTP 457 (557)
T ss_pred HHHHHH-HhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCc
Confidence 999987 5444454444 47889999999999999998872 12 4677777666 5578888888887665332 233
Q ss_pred CCch-hHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 010405 340 NHDG-RYILLSNIYVETLKGENAEEVRKTMRKRKIK 374 (511)
Q Consensus 340 ~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 374 (511)
.+.. ....+++-|.+++.+--|.+.|+.+...+..
T Consensus 458 ~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 458 SERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 3322 3335678889999999999999988875543
No 88
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.82 E-value=7.1e-06 Score=80.02 Aligned_cols=56 Identities=13% Similarity=0.059 Sum_probs=32.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCC--CCC---CH----HHHHHHHHH--HHhcCchhHHHHHHHHHhh
Q 010405 281 CMVDLLGRAGLLEEAENFIASMP--MKP---DN----VIWGTLLGA--CRVHRNAEMGQRIGNMLIE 336 (511)
Q Consensus 281 ~li~~~~~~g~~~~A~~~~~~~~--~~p---~~----~~~~~ll~~--~~~~g~~~~a~~~~~~~~~ 336 (511)
....++...|+.++|..+++.+. ... .. .+-..++.+ +...|+.++|.+.+..++.
T Consensus 269 ~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 269 HAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45556667777777777776651 111 11 111222333 5677888888888887776
No 89
>PF12854 PPR_1: PPR repeat
Probab=98.79 E-value=7.2e-09 Score=61.75 Aligned_cols=34 Identities=38% Similarity=0.460 Sum_probs=30.5
Q ss_pred cCCCCCcchHHHHHHHHHhcCChHHHHHHHhcCC
Q 010405 5 NSFAYDVFVKNSLIQFYSVCGRVRDARWVFDESD 38 (511)
Q Consensus 5 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 38 (511)
.|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4889999999999999999999999999999885
No 90
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.79 E-value=2.4e-06 Score=84.49 Aligned_cols=55 Identities=18% Similarity=0.155 Sum_probs=25.9
Q ss_pred HHHHHHHhcCChHHHHHHHh--cCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC
Q 010405 16 SLIQFYSVCGRVRDARWVFD--ESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ 70 (511)
Q Consensus 16 ~li~~~~~~g~~~~A~~~f~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 70 (511)
+.|+.|.+.|.+..|.+.-. +....|......+..++.+..-+++|-.+|+++..
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d 676 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD 676 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC
Confidence 44566666666655554432 11223444444444444444444444444444443
No 91
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=5.2e-06 Score=79.78 Aligned_cols=216 Identities=13% Similarity=0.059 Sum_probs=130.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCee---ehH-------HHH
Q 010405 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS---AYT-------SAI 212 (511)
Q Consensus 143 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~---~~~-------~li 212 (511)
..+.++.....+++.+.+-+....+.. .+...++....+|...|.+.++...-+...+.... -|+ .+.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 344555555556666666666666553 45555566666666666666655554443332111 111 123
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCH-hHHHHHHHHHHHcCC
Q 010405 213 FGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPEL-DHYACMVDLLGRAGL 291 (511)
Q Consensus 213 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~ 291 (511)
.+|.+.++++.|+..|.+.+.....|+.. .+....+++........- +.|.. .-...-...+.+.|+
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~---~~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAY---INPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHh---hChhHHHHHHHHHHHHHhccC
Confidence 34455566666666666655443333321 111223333333332221 23332 111122556677889
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 010405 292 LEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMR 369 (511)
Q Consensus 292 ~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 369 (511)
+.+|.+.+.++ ...| |...|..-..+|.+.|.+..|+.-.+..++++|+....|..=+.++....+|+.|.+.+++-.
T Consensus 374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888887 3445 667888888888899999999999999999999888888888888888888999998887776
Q ss_pred hCC
Q 010405 370 KRK 372 (511)
Q Consensus 370 ~~g 372 (511)
+.+
T Consensus 454 e~d 456 (539)
T KOG0548|consen 454 ELD 456 (539)
T ss_pred hcC
Confidence 543
No 92
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.74 E-value=4.5e-06 Score=74.23 Aligned_cols=299 Identities=14% Similarity=0.127 Sum_probs=164.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHccCCCC---ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHH-HHHHHHHCC
Q 010405 45 WNSMINGYVRNGEILEGLKLFDKMPQR---NDVSWNSILGGLVRFGSVDDACRVFNQMPK--RSLVSWVV-LISGFAQNG 118 (511)
Q Consensus 45 ~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~g 118 (511)
+++.+..+.+..+++.|++++..-.++ +....+.|..+|-...++..|...++++.. |...-|.. -...+.+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 455555566666777777776655442 334455556666667777777777776653 22222221 234455666
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhHHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 010405 119 RPKEALALFREMQSLDLEPNSAILVSLLSA--CAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196 (511)
Q Consensus 119 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 196 (511)
.+.+|+.+...|... |+...-..-+.+ ....+++..+..+.++....| +..+.+...-...+.|+++.|.+-
T Consensus 93 i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHH
Confidence 777777766665432 222111111111 123445555555554443222 233333344444556666666666
Q ss_pred HHhcCC----CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCC
Q 010405 197 FHSYGD----KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGI 272 (511)
Q Consensus 197 ~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 272 (511)
|+...+ ....+||..+ +..+.|+.+.|+++..++.+.|++-.+. ++. |..-++..+ +.. |
T Consensus 167 FqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPE-lgI--------Gm~tegiDv-rsv----g- 230 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPE-LGI--------GMTTEGIDV-RSV----G- 230 (459)
T ss_pred HHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCc-cCc--------cceeccCch-hcc----c-
Confidence 665544 2334444433 2334556666666666666665542111 110 000000000 000 0
Q ss_pred CCC-------HhHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC
Q 010405 273 KPE-------LDHYACMVDLLGRAGLLEEAENFIASMP----MKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH 341 (511)
Q Consensus 273 ~p~-------~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 341 (511)
.|- ...+|.-...+.+.|+++.|.+-+..|| .+.|++|...+.-. -..+++..+.+-+.-+++++|-.
T Consensus 231 Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP 309 (459)
T KOG4340|consen 231 NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFP 309 (459)
T ss_pred chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCC
Confidence 011 1123333345678899999999999995 23477777655332 23466777888888888899988
Q ss_pred chhHHHHHHHHHHcCCchHHHHHHH
Q 010405 342 DGRYILLSNIYVETLKGENAEEVRK 366 (511)
Q Consensus 342 ~~~~~~l~~~~~~~g~~~~A~~~~~ 366 (511)
+.++..++-.|++..-++-|..++-
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 9999999999999999999988874
No 93
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.74 E-value=1.1e-05 Score=71.93 Aligned_cols=357 Identities=12% Similarity=0.036 Sum_probs=196.5
Q ss_pred CCCCCcchHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHccCCC--CChhHHHHH-
Q 010405 6 SFAYDVFVKNSLIQFYSVCGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ--RNDVSWNSI- 79 (511)
Q Consensus 6 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~l- 79 (511)
|+.--..-+++.+..+.+..++++|++++..-. +++....+.+.-+|....++..|-.+|+++.+ |...-|..-
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~ 84 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQ 84 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 333334456777888888899999999987544 33566777888888888889888888888764 322111100
Q ss_pred HHHH----------------------------------HhcCCHHHHHHHHhhCC-CCChhHHHHHHHHHHHCCChhHHH
Q 010405 80 LGGL----------------------------------VRFGSVDDACRVFNQMP-KRSLVSWVVLISGFAQNGRPKEAL 124 (511)
Q Consensus 80 i~~~----------------------------------~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~ 124 (511)
...+ -..+++..+..+.++.+ +.+..+.+.......+.|+++.|+
T Consensus 85 AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 85 AQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred HHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHH
Confidence 0111 12355555555666655 344445555555566788888888
Q ss_pred HHHHHHHHC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------------ccHH--------HHHHHH-
Q 010405 125 ALFREMQSL-DLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK-------------LDSI--------LCAALI- 181 (511)
Q Consensus 125 ~~~~~m~~~-~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~~--------~~~~li- 181 (511)
+-|+...+- |..| ...|+..+ +..+.++.+.|.....+++++|+. ||+. .-++++
T Consensus 165 qkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~e 242 (459)
T KOG4340|consen 165 QKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVE 242 (459)
T ss_pred HHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHH
Confidence 888777654 4443 44555444 455667888888888888776642 1111 112222
Q ss_pred ------HHHHhcCCHHHHHHHHHhcCCC-----CeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010405 182 ------DMYAKCGSIDLAMQVFHSYGDK-----DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250 (511)
Q Consensus 182 ------~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 250 (511)
..+.+.|+.+.|.+.+-.|+.+ |++|...+.-. -..+++.+..+-+.-++.... ....||..++-.|
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLlly 320 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLY 320 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHH
Confidence 3356677888888888877753 55655444322 123445555555555555432 3456777777788
Q ss_pred hccCCHHHHHHHHHHchhhcCC-CCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCc---h
Q 010405 251 SHLGWVEKGFYYFHSMFDVHGI-KPELDHYACMVDLLGRAGLLEEAENFIASMPMKP--DNVIWGTLLGACRVHRN---A 324 (511)
Q Consensus 251 ~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p--~~~~~~~ll~~~~~~g~---~ 324 (511)
++..-++.|-.++.+-.. ... -.+...|+.|=......-..++|++-++.+...- .......-+.--...++ .
T Consensus 321 CKNeyf~lAADvLAEn~~-lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~ 399 (459)
T KOG4340|consen 321 CKNEYFDLAADVLAENAH-LTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAI 399 (459)
T ss_pred hhhHHHhHHHHHHhhCcc-hhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 887777777776654332 111 1223334333333333445666655544431000 00000000111111111 1
Q ss_pred hHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 325 EMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 325 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
..+++-+++.+++-. .+...-+..|++..++..++++|..-.+
T Consensus 400 R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 400 RKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 122333333333211 2344556778888899999998876544
No 94
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.73 E-value=4.4e-05 Score=75.13 Aligned_cols=348 Identities=14% Similarity=0.112 Sum_probs=183.3
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHccCCC---CChhHHHHHHHHH
Q 010405 10 DVFVKNSLIQFYSVCGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ---RNDVSWNSILGGL 83 (511)
Q Consensus 10 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~ 83 (511)
+.+.|..+.-.+....++++|++.|.... +.|...|.-+.-.-++.|+++.....-.+..+ .....|..+.-++
T Consensus 74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~ 153 (700)
T KOG1156|consen 74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQ 153 (700)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 34668888888888889999999997533 33444454444444455555444444333332 2234455555555
Q ss_pred HhcCCHHHHHHHHhhCCC-----CChhHHHH------HHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHH-HHHHHHHHh
Q 010405 84 VRFGSVDDACRVFNQMPK-----RSLVSWVV------LISGFAQNGRPKEALALFREMQSLDLEPNSAIL-VSLLSACAQ 151 (511)
Q Consensus 84 ~~~g~~~~A~~~~~~~~~-----~~~~~~~~------li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~-~~ll~~~~~ 151 (511)
.-.|+...|..+.+...+ ++...+.- ........|.+++|++-+..-... ..|...+ ..-...+.+
T Consensus 154 ~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~k 231 (700)
T KOG1156|consen 154 HLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMK 231 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHH
Confidence 555666665555544331 22222211 122334455555555544333221 1121111 122333455
Q ss_pred cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH-HHHHhc------------------------------
Q 010405 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM-QVFHSY------------------------------ 200 (511)
Q Consensus 152 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~------------------------------ 200 (511)
.+++++|..++..++..+ |.+...|-.+..++.+..+.-++. .+|...
T Consensus 232 l~~lEeA~~~y~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdky 310 (700)
T KOG1156|consen 232 LGQLEEAVKVYRRLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKY 310 (700)
T ss_pred HhhHHhHHHHHHHHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHH
Confidence 556666666666555552 222333333333333222222222 333332
Q ss_pred ----CCCCe-eehHHHHHHHHHcCChHHHHHHHHHHH----hCCC----------CCCHH--HHHHHHHHHhccCCHHHH
Q 010405 201 ----GDKDV-SAYTSAIFGLAMNGHSIEAFELFENMK----SKGI----------SPDSI--SYIAVLSACSHLGWVEKG 259 (511)
Q Consensus 201 ----~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~----------~p~~~--t~~~ll~~~~~~g~~~~a 259 (511)
.++.+ ..+..+.+.|-.-...+-..++...+. ..|. +|... |+..+...+-..|+++.|
T Consensus 311 L~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A 390 (700)
T KOG1156|consen 311 LRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVA 390 (700)
T ss_pred HHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHH
Confidence 22222 223333333332222221122222222 1111 45544 444567778899999999
Q ss_pred HHHHHHchhhcCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCchhHHHHHHHHHhh
Q 010405 260 FYYFHSMFDVHGIKPE-LDHYACMVDLLGRAGLLEEAENFIASMP-M-KPDNVIWGTLLGACRVHRNAEMGQRIGNMLIE 336 (511)
Q Consensus 260 ~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (511)
..+.+.... -.|+ ++.|..-.+.+...|.+++|..++++.. + .||...-.--..-..+.++.++|.++.....+
T Consensus 391 ~~yId~AId---HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr 467 (700)
T KOG1156|consen 391 LEYIDLAID---HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTR 467 (700)
T ss_pred HHHHHHHhc---cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhh
Confidence 999999976 3455 6677777889999999999999999872 2 34554433444445778999999999988877
Q ss_pred cCCCCchhHHHHHHHHHHcCCchHHHHHHH
Q 010405 337 SDQNHDGRYILLSNIYVETLKGENAEEVRK 366 (511)
Q Consensus 337 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 366 (511)
.+- .....|..+-+-==..+.+..+++
T Consensus 468 ~~~---~~~~~L~~mqcmWf~~E~g~ay~r 494 (700)
T KOG1156|consen 468 EGF---GAVNNLAEMQCMWFQLEDGEAYLR 494 (700)
T ss_pred ccc---chhhhHHHhhhHHHhHhhhHHHHH
Confidence 544 334444444333334455555443
No 95
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.71 E-value=4e-05 Score=69.65 Aligned_cols=322 Identities=11% Similarity=0.075 Sum_probs=216.0
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHH---HHHHHcCChHHHHHHHccCCCCChhHHHHH---HHHHHhcCCH
Q 010405 16 SLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMI---NGYVRNGEILEGLKLFDKMPQRNDVSWNSI---LGGLVRFGSV 89 (511)
Q Consensus 16 ~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l---i~~~~~~g~~ 89 (511)
-|-..+...|++.+|+.-|....+-|+..|-++- ..|...|+-..|+.-|.+..+-.+.-+.+- ...+.+.|.+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccH
Confidence 3455666779999999999988888888887775 468889999999988888875222222222 3467899999
Q ss_pred HHHHHHHhhCCCCCh------h----------HH--HHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 010405 90 DDACRVFNQMPKRSL------V----------SW--VVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151 (511)
Q Consensus 90 ~~A~~~~~~~~~~~~------~----------~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 151 (511)
+.|..-|+...+.++ . .| ...+..+.-.|+...|+.....+++.. +-|...+..-..+|..
T Consensus 123 e~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~ 201 (504)
T KOG0624|consen 123 EQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIA 201 (504)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHh
Confidence 999999998864221 1 12 234555677899999999999998853 4588888888899999
Q ss_pred cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHH
Q 010405 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENM 231 (511)
Q Consensus 152 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 231 (511)
.|.+..|+.-+..+-+.. ..++...--+-..+...|+.+.++...++..+-|...- .+|..-....+..+.+..|
T Consensus 202 ~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK----~Cf~~YKklkKv~K~les~ 276 (504)
T KOG0624|consen 202 EGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHK----LCFPFYKKLKKVVKSLESA 276 (504)
T ss_pred cCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchh----hHHHHHHHHHHHHHHHHHH
Confidence 999999998888777764 33556666677888999999999998888765333210 0111111122233333333
Q ss_pred HhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC-----HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC
Q 010405 232 KSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE-----LDHYACMVDLLGRAGLLEEAENFIASM-PMK 305 (511)
Q Consensus 232 ~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~ 305 (511)
.+ ....+.+.++.+-.+...+ ..|. ...+..+-..+...|++.+|++...+. .+.
T Consensus 277 e~----------------~ie~~~~t~cle~ge~vlk---~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d 337 (504)
T KOG0624|consen 277 EQ----------------AIEEKHWTECLEAGEKVLK---NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID 337 (504)
T ss_pred HH----------------HHhhhhHHHHHHHHHHHHh---cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC
Confidence 22 2233444455555555544 1232 223444556667778888888877765 556
Q ss_pred CC-HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 306 PD-NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 306 p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
|| +.++.--..+|.....++.|+.-|+.+.+.++++..+-.. .+.|.++.+...+++
T Consensus 338 ~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reG----------le~Akrlkkqs~kRD 395 (504)
T KOG0624|consen 338 PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREG----------LERAKRLKKQSGKRD 395 (504)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHH----------HHHHHHHHHHhccch
Confidence 65 6677777788888888999999999999998877543222 345555555544443
No 96
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.65 E-value=2.6e-06 Score=90.00 Aligned_cols=200 Identities=11% Similarity=0.067 Sum_probs=166.0
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC--------CeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHH
Q 010405 171 KLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK--------DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSIS 242 (511)
Q Consensus 171 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 242 (511)
|-....|-..|......+++++|++++++.... -.-.|.+++..-...|.-+...++|+++.+.- . .-..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d-~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D-AYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c-hHHH
Confidence 445667888888888899999999999887642 22368888888888888888899999988742 1 2456
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHH
Q 010405 243 YIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM----PMKPDNVIWGTLLGAC 318 (511)
Q Consensus 243 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~ 318 (511)
|..|...|.+.+..++|.++++.|.++++ .....|...++.+.+..+-++|..++.++ |.+-......-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 78899999999999999999999999666 66778999999999999999999999876 3222444556666677
Q ss_pred HhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 010405 319 RVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIK 374 (511)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 374 (511)
.+.|+.+++..+|+..+.-.|.....|..++++-.+.|+.+.+..+|++....++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 89999999999999999999999999999999999999999999999999987764
No 97
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.65 E-value=2.5e-06 Score=74.98 Aligned_cols=119 Identities=8% Similarity=0.006 Sum_probs=95.6
Q ss_pred cCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCc--hhHH
Q 010405 253 LGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGA-CRVHRN--AEMG 327 (511)
Q Consensus 253 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~-~~~~g~--~~~a 327 (511)
.++.+++...+....+ .-+.+...|..+...|...|++++|...|++. ...| +...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 5666777777777665 23456788888999999999999999999887 4555 56677777776 466676 5899
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010405 328 QRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKI 373 (511)
Q Consensus 328 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 373 (511)
.++++++.+.+|+++.++..++..+.+.|++++|...++++.+...
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999999999999999877443
No 98
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.64 E-value=3.2e-06 Score=77.16 Aligned_cols=182 Identities=9% Similarity=-0.038 Sum_probs=119.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCe----eehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH--HHHH
Q 010405 173 DSILCAALIDMYAKCGSIDLAMQVFHSYGD--KDV----SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS--ISYI 244 (511)
Q Consensus 173 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~ 244 (511)
....+..++..|.+.|++++|...|+++.. |+. .+|..+..+|...|++++|+..++++.+....... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 455666777778888888888888887654 221 24566777788888888888888888764321111 1344
Q ss_pred HHHHHHhcc--------CCHHHHHHHHHHchhhcCCCCCH-hHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 010405 245 AVLSACSHL--------GWVEKGFYYFHSMFDVHGIKPEL-DHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315 (511)
Q Consensus 245 ~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll 315 (511)
.+..++... |+.++|.+.|+.+.+. .|+. ..+..+.... ...... ......+.
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~----~~~~~~-----------~~~~~~~a 173 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMD----YLRNRL-----------AGKELYVA 173 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHH----HHHHHH-----------HHHHHHHH
Confidence 444445443 6677778887777762 2332 2222221110 000000 00112455
Q ss_pred HHHHhcCchhHHHHHHHHHhhcCCCC---chhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 316 GACRVHRNAEMGQRIGNMLIESDQNH---DGRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
..+...|++++|...++++.+..|++ +..+..++.+|.+.|++++|..+++.+..+.
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 66889999999999999999976654 4688899999999999999999999887643
No 99
>PLN02789 farnesyltranstransferase
Probab=98.63 E-value=1.5e-05 Score=75.21 Aligned_cols=229 Identities=14% Similarity=0.106 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 010405 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEP-NSAILVSLLSACAQLG-ALDYGNWVYSYIQKKCIKLDSILCAALIDM 183 (511)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 183 (511)
++..+-..+...++.++|+.++.++.+. .| +..+|+....++...+ ++++++..++.+.+.. +.+..+|+....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 3444445555566666666666666653 23 3334444444444444 3556666665555543 2233444444333
Q ss_pred HHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010405 184 YAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263 (511)
Q Consensus 184 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 263 (511)
+.+.|+. ..++++.+++++.+...+ |..+|....-++...|+++++++.+
T Consensus 116 l~~l~~~-----------------------------~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 116 AEKLGPD-----------------------------AANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYC 165 (320)
T ss_pred HHHcCch-----------------------------hhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3333331 013444445444443222 3444444444444555555555555
Q ss_pred HHchhhcCCCCCHhHHHHHHHHHHHc---CC----HHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhc----CchhHHHHH
Q 010405 264 HSMFDVHGIKPELDHYACMVDLLGRA---GL----LEEAENFIAS-MPMKP-DNVIWGTLLGACRVH----RNAEMGQRI 330 (511)
Q Consensus 264 ~~~~~~~~~~p~~~~~~~li~~~~~~---g~----~~~A~~~~~~-~~~~p-~~~~~~~ll~~~~~~----g~~~~a~~~ 330 (511)
+++.+. -+-+...|+.....+.+. |. .+++.++..+ +...| |...|+.+...+... ++..+|..+
T Consensus 166 ~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 166 HQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred HHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 555541 112233343333333322 11 2345555533 34445 566787777777663 344668888
Q ss_pred HHHHhhcCCCCchhHHHHHHHHHHcC------------------CchHHHHHHHHHH
Q 010405 331 GNMLIESDQNHDGRYILLSNIYVETL------------------KGENAEEVRKTMR 369 (511)
Q Consensus 331 ~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~m~ 369 (511)
+.++...+|.++.+...|++.|.... ..++|.++++.+.
T Consensus 244 ~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 244 CLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 88888888888888889999998643 2356777777773
No 100
>PF12854 PPR_1: PPR repeat
Probab=98.62 E-value=6.9e-08 Score=57.50 Aligned_cols=33 Identities=30% Similarity=0.481 Sum_probs=26.1
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 010405 169 CIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201 (511)
Q Consensus 169 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 201 (511)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888887774
No 101
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.61 E-value=5.8e-05 Score=75.10 Aligned_cols=327 Identities=13% Similarity=0.087 Sum_probs=189.5
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCChh---------------
Q 010405 10 DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDV--------------- 74 (511)
Q Consensus 10 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--------------- 74 (511)
|......+..++.+..-+++|-.+|+++..+|- .+..|-+..-+.+|+++-+-.-...++
T Consensus 647 de~il~~ia~alik~elydkagdlfeki~d~dk-----ale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q 721 (1636)
T KOG3616|consen 647 DEEILEHIAAALIKGELYDKAGDLFEKIHDFDK-----ALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQ 721 (1636)
T ss_pred cHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHH-----HHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHh
Confidence 444455556666666677777777777765442 222333333344444443322110000
Q ss_pred ------------HHHHHHHHHHhcCCHHHHHHHHhhCCCCChh--HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHh
Q 010405 75 ------------SWNSILGGLVRFGSVDDACRVFNQMPKRSLV--SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA 140 (511)
Q Consensus 75 ------------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 140 (511)
..-..+.+......|..|..+++.+...++. -|..+...|+..|+++.|.++|-+.-
T Consensus 722 ~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~--------- 792 (1636)
T KOG3616|consen 722 LDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD--------- 792 (1636)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------
Confidence 0111223334456667777777766655443 25566677777777777777764431
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCC
Q 010405 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGH 220 (511)
Q Consensus 141 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 220 (511)
.++-.|..|.+.|+++.|.++-.+. .|.+.....|-+-..-.-+.|++.+|.++|-.+..|+. .|..|-++|.
T Consensus 793 ~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~ 865 (1636)
T KOG3616|consen 793 LFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGL 865 (1636)
T ss_pred hhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCc
Confidence 2444566677777777776654433 23333445555555566667777777777776666653 4667777777
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 010405 221 SIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300 (511)
Q Consensus 221 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 300 (511)
.+..+++..+-... .-..|...+..-+...|++..|...|-+..+ |.+-+.+|-..+.|++|.++-+
T Consensus 866 ~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 866 DDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred chHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHh
Confidence 77777776653221 1134555666777788999888887766543 5567778888888888888876
Q ss_pred hCCCC----CCHHHHHHHH------HHHHhcCc-------------hhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCC
Q 010405 301 SMPMK----PDNVIWGTLL------GACRVHRN-------------AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLK 357 (511)
Q Consensus 301 ~~~~~----p~~~~~~~ll------~~~~~~g~-------------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 357 (511)
.-+-. .-...|.--+ ..+.++|- ++-|..+.+-..+.. -+.+...++.-+...|+
T Consensus 933 tegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k--~~~vhlk~a~~ledegk 1010 (1636)
T KOG3616|consen 933 TEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK--MGEVHLKLAMFLEDEGK 1010 (1636)
T ss_pred ccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc--CccchhHHhhhhhhccc
Confidence 65211 0112332221 22333443 444444444333322 23566777778889999
Q ss_pred chHHHHHHHHHHhCC
Q 010405 358 GENAEEVRKTMRKRK 372 (511)
Q Consensus 358 ~~~A~~~~~~m~~~g 372 (511)
+++|.+.+-+..+.+
T Consensus 1011 ~edaskhyveaikln 1025 (1636)
T KOG3616|consen 1011 FEDASKHYVEAIKLN 1025 (1636)
T ss_pred hhhhhHhhHHHhhcc
Confidence 999998887776644
No 102
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.60 E-value=6.1e-05 Score=75.59 Aligned_cols=92 Identities=15% Similarity=0.092 Sum_probs=53.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCc
Q 010405 281 CMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKG 358 (511)
Q Consensus 281 ~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 358 (511)
...+.+.+.+..++|..-+.+. .+.| ....|......+...|..++|.+.|..+..++|+++.....++.++.+.|+-
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~ 734 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSP 734 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCc
Confidence 3344445555555555444333 2222 2333443334455666777777777777777777777777777777777766
Q ss_pred hHHHH--HHHHHHhCC
Q 010405 359 ENAEE--VRKTMRKRK 372 (511)
Q Consensus 359 ~~A~~--~~~~m~~~g 372 (511)
.-|.. ++..+.+.+
T Consensus 735 ~la~~~~~L~dalr~d 750 (799)
T KOG4162|consen 735 RLAEKRSLLSDALRLD 750 (799)
T ss_pred chHHHHHHHHHHHhhC
Confidence 65555 666665533
No 103
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.59 E-value=3.6e-05 Score=70.24 Aligned_cols=343 Identities=12% Similarity=0.091 Sum_probs=207.2
Q ss_pred HHHHHhcCChHHHHHHHhcCC------CCChhHHHHHHHHHHHcCChHHHHHHHccCCC---CChhHHHHHHHHHHhcCC
Q 010405 18 IQFYSVCGRVRDARWVFDESD------DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ---RNDVSWNSILGGLVRFGS 88 (511)
Q Consensus 18 i~~~~~~g~~~~A~~~f~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~ 88 (511)
+.-+....++..|+.+++--. +.++..| +.-++.+.|++++|+..|.-+.+ ++...+-.|.-.+.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHH
Confidence 344555678899999887433 1233344 45677899999999999987765 566777778777778899
Q ss_pred HHHHHHHHhhCCCC---------------Chh---HH-----------HHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH
Q 010405 89 VDDACRVFNQMPKR---------------SLV---SW-----------VVLISGFAQNGRPKEALALFREMQSLDLEPNS 139 (511)
Q Consensus 89 ~~~A~~~~~~~~~~---------------~~~---~~-----------~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 139 (511)
+.+|..+-.+.++. |.. ++ -+|.+.....-.+.+|+++|.+.+.. .|+-
T Consensus 107 Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey 184 (557)
T KOG3785|consen 107 YIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEY 184 (557)
T ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--Chhh
Confidence 99999988777641 111 11 12223333334577888888887764 4555
Q ss_pred hHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh--cCCHHHH--HHHHHhcC----------CCC
Q 010405 140 AILVSLLS-ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAK--CGSIDLA--MQVFHSYG----------DKD 204 (511)
Q Consensus 140 ~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~--~g~~~~A--~~~~~~~~----------~~~ 204 (511)
...+.-+. +|.+..-++-+.+++.--++. ++.++..-|....-..+ .|+..++ .++-+... +.|
T Consensus 185 ~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHN 263 (557)
T KOG3785|consen 185 IALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHN 263 (557)
T ss_pred hhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcC
Confidence 55555444 345666677777777666654 33344444443333332 2332222 11222111 112
Q ss_pred eee---------------------hHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-----HhccCCHHH
Q 010405 205 VSA---------------------YTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA-----CSHLGWVEK 258 (511)
Q Consensus 205 ~~~---------------------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-----~~~~g~~~~ 258 (511)
.+. --.++--|.+.++..+|..+.+++.- ..|-......+..+ ......+.-
T Consensus 264 LVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKi 341 (557)
T KOG3785|consen 264 LVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKI 341 (557)
T ss_pred eEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHH
Confidence 221 23344557788999999988776532 23433333333322 112223456
Q ss_pred HHHHHHHchhhcCCCCCH-hHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCchhHHHHHHHHHh
Q 010405 259 GFYYFHSMFDVHGIKPEL-DHYACMVDLLGRAGLLEEAENFIASMP--MKPDNVIWGTLLGACRVHRNAEMGQRIGNMLI 335 (511)
Q Consensus 259 a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 335 (511)
|.+.|+..-+ .+...|. .--.++...+.-..++++.+-.++.+. +..|..---.+..+.+..|++.+|+++|-++.
T Consensus 342 AqqffqlVG~-Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is 420 (557)
T KOG3785|consen 342 AQQFFQLVGE-SALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRIS 420 (557)
T ss_pred HHHHHHHhcc-cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhc
Confidence 7777766654 3443332 223455666666667888888877762 22333333357888999999999999998888
Q ss_pred hcCCCCchhHH-HHHHHHHHcCCchHHHHHHHHH
Q 010405 336 ESDQNHDGRYI-LLSNIYVETLKGENAEEVRKTM 368 (511)
Q Consensus 336 ~~~p~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m 368 (511)
..+-.+..+|- .|++.|.+.++.+-|..++-++
T Consensus 421 ~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 421 GPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred ChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 76644555554 7789999999999998776544
No 104
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.55 E-value=6.5e-06 Score=79.81 Aligned_cols=243 Identities=12% Similarity=0.038 Sum_probs=178.3
Q ss_pred HHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHH
Q 010405 112 SGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSID 191 (511)
Q Consensus 112 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 191 (511)
.-+.+.|+..+|.-+|+...+.+ +-+...|.-|....+..++-..|+..+.+.++.. +.+..+.-+|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 34567888888888888887764 4467888888888888888888888888888874 446777888888888888888
Q ss_pred HHHHHHHhcCCC------------CeeehHHHHHHHHHcCChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhccCCHHH
Q 010405 192 LAMQVFHSYGDK------------DVSAYTSAIFGLAMNGHSIEAFELFENMKS-KGISPDSISYIAVLSACSHLGWVEK 258 (511)
Q Consensus 192 ~A~~~~~~~~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~g~~~~ 258 (511)
.|.+.++.-... +...-+. ..+..........++|-++.. .+.++|......|.-.|--.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 888888765220 1000000 111222233455666666654 4544677777777777888999999
Q ss_pred HHHHHHHchhhcCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCchhHHHHHHHHHh
Q 010405 259 GFYYFHSMFDVHGIKPE-LDHYACMVDLLGRAGLLEEAENFIASM-PMKPDN-VIWGTLLGACRVHRNAEMGQRIGNMLI 335 (511)
Q Consensus 259 a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~ 335 (511)
|...|+.+.. +.|+ ...||.|...++...+.++|..-|++. .++|+- .++..|.-+|...|.+++|.+.|-.++
T Consensus 449 aiDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 9999999986 5664 788999999999999999999999987 788865 478888889999999999999999988
Q ss_pred hcCCCC----------chhHHHHHHHHHHcCCchHH
Q 010405 336 ESDQNH----------DGRYILLSNIYVETLKGENA 361 (511)
Q Consensus 336 ~~~p~~----------~~~~~~l~~~~~~~g~~~~A 361 (511)
.+.+.+ ..+|..|=.++.-.++.|-+
T Consensus 526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 865541 13555555555555555533
No 105
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.55 E-value=0.00027 Score=78.18 Aligned_cols=321 Identities=10% Similarity=0.005 Sum_probs=200.7
Q ss_pred HHHHHcCChHHHHHHHccCCCCChhH--HHHHHHHHHhcCCHHHHHHHHhhCCC----CChhHHHHHHHHHHHCCChhHH
Q 010405 50 NGYVRNGEILEGLKLFDKMPQRNDVS--WNSILGGLVRFGSVDDACRVFNQMPK----RSLVSWVVLISGFAQNGRPKEA 123 (511)
Q Consensus 50 ~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A 123 (511)
..+...|++.+|..........+... ...........|+++.+...++.++. .+..........+...|++++|
T Consensus 349 ~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a 428 (903)
T PRK04841 349 EAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEV 428 (903)
T ss_pred HHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHH
Confidence 33455566666665555544332111 11122334567888888888888752 2333334455666788999999
Q ss_pred HHHHHHHHHCCC------CCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc----HHHHHHHHHHHHhcCCHH
Q 010405 124 LALFREMQSLDL------EPN--SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD----SILCAALIDMYAKCGSID 191 (511)
Q Consensus 124 ~~~~~~m~~~~~------~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~y~~~g~~~ 191 (511)
..++......-- .|. ......+...+...|+++.|...++...+.-...+ ....+.+...+...|+++
T Consensus 429 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~ 508 (903)
T PRK04841 429 NTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELA 508 (903)
T ss_pred HHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHH
Confidence 999987754310 111 11222233456678999999999998876421212 234566777788899999
Q ss_pred HHHHHHHhcCC-------CC--eeehHHHHHHHHHcCChHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHhccCC
Q 010405 192 LAMQVFHSYGD-------KD--VSAYTSAIFGLAMNGHSIEAFELFENMKSK----GIS--P-DSISYIAVLSACSHLGW 255 (511)
Q Consensus 192 ~A~~~~~~~~~-------~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--p-~~~t~~~ll~~~~~~g~ 255 (511)
+|...+++... +. ..++..+...+...|++++|...+++.... +.. | ....+..+...+...|+
T Consensus 509 ~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~ 588 (903)
T PRK04841 509 RALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWAR 588 (903)
T ss_pred HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcC
Confidence 99999887653 11 124455666788899999999998887542 211 1 12334445556677899
Q ss_pred HHHHHHHHHHchhhcC-CCC--CHhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHHHHHH-----HHHHHHhcCc
Q 010405 256 VEKGFYYFHSMFDVHG-IKP--ELDHYACMVDLLGRAGLLEEAENFIASM----PMKPDNVIWGT-----LLGACRVHRN 323 (511)
Q Consensus 256 ~~~a~~~~~~~~~~~~-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~-----ll~~~~~~g~ 323 (511)
+++|...+........ ..+ ....+..+...+...|++++|.+.+++. ........+.. .+..+...|+
T Consensus 589 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 668 (903)
T PRK04841 589 LDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGD 668 (903)
T ss_pred HHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCC
Confidence 9999999888765211 112 2334555677888999999999888765 11111111111 1233456889
Q ss_pred hhHHHHHHHHHhhcCCCCchh----HHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 324 AEMGQRIGNMLIESDQNHDGR----YILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 324 ~~~a~~~~~~~~~~~p~~~~~----~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
.+.|...+.......+..... +..++.++...|++++|...+++...
T Consensus 669 ~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 669 KEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNE 719 (903)
T ss_pred HHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999987766532222211 45778889999999999999988765
No 106
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=0.00031 Score=72.60 Aligned_cols=253 Identities=13% Similarity=0.092 Sum_probs=152.0
Q ss_pred CCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010405 87 GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQ 166 (511)
Q Consensus 87 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 166 (511)
++++.|.+.-++..+ +..|..+..+-.+.|...+|++-|-+. -|+..|..++.++.+.|.+++-..++..+.
T Consensus 1089 ~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred hhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 334444444333332 357999999999999999998877442 367789999999999999999999999888
Q ss_pred HcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----------------------CCeeehHHHHHHHHHcCChHH
Q 010405 167 KKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD-----------------------KDVSAYTSAIFGLAMNGHSIE 223 (511)
Q Consensus 167 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----------------------~~~~~~~~li~~~~~~g~~~~ 223 (511)
+..-+|.+. +.|+-+|++.+++.+-++.+..-.. .++.-|..+...+...|++..
T Consensus 1161 kk~~E~~id--~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~ 1238 (1666)
T KOG0985|consen 1161 KKVREPYID--SELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQG 1238 (1666)
T ss_pred HhhcCccch--HHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 887666644 5788999999998887665431100 133335555555555666655
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCC--CCCHhHHHHHHHHHHHcCCHHHHHHHHHh
Q 010405 224 AFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGI--KPELDHYACMVDLLGRAGLLEEAENFIAS 301 (511)
Q Consensus 224 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 301 (511)
|.+.-++.. +..||.-+-.+|...+.+..|. | .|+ .....-..-|+..|-..|.++|-..+++.
T Consensus 1239 AVD~aRKAn------s~ktWK~VcfaCvd~~EFrlAQ-----i---CGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1239 AVDAARKAN------STKTWKEVCFACVDKEEFRLAQ-----I---CGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred HHHHhhhcc------chhHHHHHHHHHhchhhhhHHH-----h---cCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 555444321 4456666666666555544332 1 232 22344455677777777777777777766
Q ss_pred C-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 010405 302 M-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMR 369 (511)
Q Consensus 302 ~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 369 (511)
. +.+. ....|+-|.-.|.+-+ +++..+.++-.-.. ...--+++++..+.-|.+..-++.+-.
T Consensus 1305 ~LGLERAHMgmfTELaiLYskyk-p~km~EHl~LFwsR-----vNipKviRA~eqahlW~ElvfLY~~y~ 1368 (1666)
T KOG0985|consen 1305 GLGLERAHMGMFTELAILYSKYK-PEKMMEHLKLFWSR-----VNIPKVIRAAEQAHLWSELVFLYDKYE 1368 (1666)
T ss_pred hhchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4 4432 3345555554454432 33333333322210 111135666666667777666665443
No 107
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.52 E-value=3.4e-05 Score=77.69 Aligned_cols=238 Identities=16% Similarity=0.179 Sum_probs=148.8
Q ss_pred CcchHHHHH--HHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC------------CChhH
Q 010405 10 DVFVKNSLI--QFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ------------RNDVS 75 (511)
Q Consensus 10 ~~~~~~~li--~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------------~~~~~ 75 (511)
|..+-.+++ +.|.--|++|.|.+-.+-+. +...|..|.+.|.+..+.+-|.-++..|.. .+..+
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~ 802 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEED 802 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcch
Confidence 344444554 34666688888877665543 456799999999999999888888877763 11122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCH
Q 010405 76 WNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGAL 155 (511)
Q Consensus 76 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 155 (511)
-....-.....|.+++|+.+|.+-.. |..|=..|...|.+++|+++-+.=-+-.+ ..||.....-+...++.
T Consensus 803 eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di 874 (1416)
T KOG3617|consen 803 EAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDI 874 (1416)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccH
Confidence 22333334567888888888877544 34455667777888888776543222111 23455555555556666
Q ss_pred HHHHHHHHHHH----------HcC---------CCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHH
Q 010405 156 DYGNWVYSYIQ----------KKC---------IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLA 216 (511)
Q Consensus 156 ~~a~~~~~~~~----------~~~---------~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 216 (511)
+.|+++|++.- ... -..|...|.......-..|+++.|+.+|.... -|-+++...+
T Consensus 875 ~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~fs~VrI~C 949 (1416)
T KOG3617|consen 875 EAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-----DYFSMVRIKC 949 (1416)
T ss_pred HHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----hhhhheeeEe
Confidence 66666655421 110 12345566666666667788888888887654 3556666666
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchh
Q 010405 217 MNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD 268 (511)
Q Consensus 217 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 268 (511)
-.|+.++|-++-++- | |......|.+.|...|++.+|..+|.+...
T Consensus 950 ~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 950 IQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred eccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 677777777766532 2 444444577778888888888877766543
No 108
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.51 E-value=4e-06 Score=69.65 Aligned_cols=121 Identities=9% Similarity=-0.025 Sum_probs=80.1
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 010405 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PM 304 (511)
Q Consensus 226 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 304 (511)
.+|++..+ +.|+. +..+..++...|++++|...|+.+.. --+.+...|..+..++.+.|++++|...|+.. ..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444444 23443 44456666777777777777777765 12334667777777777777777777777776 33
Q ss_pred CC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 010405 305 KP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIY 352 (511)
Q Consensus 305 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 352 (511)
.| +...+..+..++...|+.++|+..++++++..|+++..+.....+.
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 44 5566777777777778888888888888777777776666555443
No 109
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.50 E-value=3e-06 Score=70.37 Aligned_cols=107 Identities=12% Similarity=-0.026 Sum_probs=91.3
Q ss_pred HHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcC
Q 010405 261 YYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338 (511)
Q Consensus 261 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 338 (511)
.+++...+ +.|+ .+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...|+++.+++
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34555544 3454 4556788899999999999999987 4555 66788889999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 339 QNHDGRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 339 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
|+++.++..++.++...|++++|...++...+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999887644
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.50 E-value=9.2e-06 Score=80.83 Aligned_cols=190 Identities=15% Similarity=0.099 Sum_probs=158.7
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010405 169 CIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248 (511)
Q Consensus 169 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 248 (511)
+++|-...-..+.+.+.+.|-...|..+|++. ..|...|.+|...|+..+|..+..+-.+ -+||+.-|..+++
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 34666677788999999999999999999976 4688889999999999999999988877 4789999999999
Q ss_pred HHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhH
Q 010405 249 ACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEM 326 (511)
Q Consensus 249 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 326 (511)
..-...-+++|+++++..... .-..+.....+.++++++.+.|+.- .+.| ...+|-.+..+..+.++.+.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 888888889999998877652 1122223334578999999999764 5555 56688888888889999999
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010405 327 GQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKI 373 (511)
Q Consensus 327 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 373 (511)
|.+.|.....++|++...|+.+..+|.+.|+-.+|...+++..+-+.
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999988764
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.48 E-value=5.4e-06 Score=82.42 Aligned_cols=222 Identities=11% Similarity=0.048 Sum_probs=104.5
Q ss_pred HHHHHHcCChHHHHHHHccCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHHCCChhHHHHH
Q 010405 49 INGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPK--RSLVSWVVLISGFAQNGRPKEALAL 126 (511)
Q Consensus 49 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~ 126 (511)
...+.+.|-...|+.+|++. ..|..+|.+|...|+-..|..+..+..+ |+...|..+.+.....--+++|.++
T Consensus 405 aell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawEl 479 (777)
T KOG1128|consen 405 AELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWEL 479 (777)
T ss_pred HHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHH
Confidence 33444444444555444443 2333444444444544444444433322 2334444444444444444555554
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-
Q 010405 127 FREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD--K- 203 (511)
Q Consensus 127 ~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~- 203 (511)
++..... +-..+.....+.++++++..-++.-.+.+ +....+|-.+..++.++++++.|.+.|..... |
T Consensus 480 sn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd 551 (777)
T KOG1128|consen 480 SNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD 551 (777)
T ss_pred hhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence 4432211 11111111122445555555555444432 33444555555555566666666666655443 2
Q ss_pred CeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHH
Q 010405 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMV 283 (511)
Q Consensus 204 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 283 (511)
+..+||.+-.+|.+.++-.+|...+.+..+.+ .-+-..|...+....+.|.+++|++.+.++........|..+...++
T Consensus 552 ~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv 630 (777)
T KOG1128|consen 552 NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIV 630 (777)
T ss_pred chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHH
Confidence 33456666666666666666666666665554 22333344444445566666666666666554322222444444333
Q ss_pred H
Q 010405 284 D 284 (511)
Q Consensus 284 ~ 284 (511)
.
T Consensus 631 ~ 631 (777)
T KOG1128|consen 631 R 631 (777)
T ss_pred H
Confidence 3
No 112
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.48 E-value=2.2e-05 Score=83.35 Aligned_cols=216 Identities=13% Similarity=0.118 Sum_probs=169.1
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHccCCCC--------ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-Ch-hHHHHH
Q 010405 41 DVVSWNSMINGYVRNGEILEGLKLFDKMPQR--------NDVSWNSILGGLVRFGSVDDACRVFNQMPKR-SL-VSWVVL 110 (511)
Q Consensus 41 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~l 110 (511)
+...|-.-|.-..+.++.++|.++++++... -...|.+++++-..-|.-+...++|++..+- |. ..|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 4567888898999999999999999888641 2457888888888888888889999998763 33 568889
Q ss_pred HHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc--cHHHHHHHHHHHHhcC
Q 010405 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKL--DSILCAALIDMYAKCG 188 (511)
Q Consensus 111 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~y~~~g 188 (511)
...|.+.+.+++|-++|+.|.+. ..-....|...+..+.+...-+.|..++.++.+. +|- ......-.+.+-.++|
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~-lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS-LPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh-cchhhhHHHHHHHHHHHhhcC
Confidence 99999999999999999999875 3346678888899999999889999999888876 232 3445566677778899
Q ss_pred CHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCCHHH
Q 010405 189 SIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS--ISYIAVLSACSHLGWVEK 258 (511)
Q Consensus 189 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~ 258 (511)
+.++++.+|+.... +-...|+..|..-.++|+.+.+..+|++....++.|-. ..|.-.|..=...|+-+.
T Consensus 1615 DaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred CchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 99999999998765 34568999999999999999999999999988877653 345555544344444433
No 113
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=0.00027 Score=68.98 Aligned_cols=308 Identities=15% Similarity=0.171 Sum_probs=164.6
Q ss_pred HHHHHHcCChHHHHHHHccCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChh--HHHHHHHHHHHCCChhHH
Q 010405 49 INGYVRNGEILEGLKLFDKMPQ---RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV--SWVVLISGFAQNGRPKEA 123 (511)
Q Consensus 49 i~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A 123 (511)
+.-+...|++++|.+.-.++.. .|...+..=+-+..+.+++++|+.+.+.-...... -+.--.-+..+.+..++|
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dea 98 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEA 98 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHH
Confidence 4566778999999998888765 45666777777888999999999877664432211 111223334578999999
Q ss_pred HHHHHHHHHCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-cHHHHHHH---------------------
Q 010405 124 LALFREMQSLDLEP-NSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKL-DSILCAAL--------------------- 180 (511)
Q Consensus 124 ~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l--------------------- 180 (511)
+..+. |..+ |..+...-...+.+.+++++|..+|+.+.+++.+. +...-..+
T Consensus 99 lk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~ 173 (652)
T KOG2376|consen 99 LKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPED 173 (652)
T ss_pred HHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcc
Confidence 99987 3333 34466667788999999999999999998765421 11111111
Q ss_pred --------HHHHHhcCCHHHHHHHHHhc--------CCCCee-----e-----hHHHHHHHHHcCChHHHHHHHHHHHhC
Q 010405 181 --------IDMYAKCGSIDLAMQVFHSY--------GDKDVS-----A-----YTSAIFGLAMNGHSIEAFELFENMKSK 234 (511)
Q Consensus 181 --------i~~y~~~g~~~~A~~~~~~~--------~~~~~~-----~-----~~~li~~~~~~g~~~~A~~~~~~m~~~ 234 (511)
.-.+...|++.+|+++++.. .+.|.. . --.|.-.+-..|+.++|..++...+..
T Consensus 174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 12233445555555555444 111100 0 111222333445555555555555444
Q ss_pred CCCCCHH----HHHHHHHHHhccCCH-H-HHHHHHHHchhhc----------CCCCCHhHHHHHHHHHHHcCCHHHHHHH
Q 010405 235 GISPDSI----SYIAVLSACSHLGWV-E-KGFYYFHSMFDVH----------GIKPELDHYACMVDLLGRAGLLEEAENF 298 (511)
Q Consensus 235 g~~p~~~----t~~~ll~~~~~~g~~-~-~a~~~~~~~~~~~----------~~~p~~~~~~~li~~~~~~g~~~~A~~~ 298 (511)
. .+|.. .-|.|+ +...-.++ + .++..++...... .-.....--++++.+| .+..+.+.++
T Consensus 254 ~-~~D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~ 329 (652)
T KOG2376|consen 254 N-PADEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVREL 329 (652)
T ss_pred c-CCCchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHH
Confidence 2 12221 111121 11111111 1 0111111110000 0000000011222222 2344555555
Q ss_pred HHhCCC-CCCHHHHHHHHHH-HH-hcCchhHHHHHHHHHhhcCCCC-chhHHHHHHHHHHcCCchHHHHHHH
Q 010405 299 IASMPM-KPDNVIWGTLLGA-CR-VHRNAEMGQRIGNMLIESDQNH-DGRYILLSNIYVETLKGENAEEVRK 366 (511)
Q Consensus 299 ~~~~~~-~p~~~~~~~ll~~-~~-~~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 366 (511)
-...+. .|.. .+.+++.. .. +......+..++....+..|.+ ..+...++.....+|+++.|.+++.
T Consensus 330 ~a~lp~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 330 SASLPGMSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred HHhCCccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 555532 2433 34444433 22 2225778888888888888876 3455577788899999999999998
No 114
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.44 E-value=1.8e-05 Score=72.11 Aligned_cols=181 Identities=14% Similarity=0.075 Sum_probs=127.6
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc---HHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-ee---e
Q 010405 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD---SILCAALIDMYAKCGSIDLAMQVFHSYGD--KD-VS---A 207 (511)
Q Consensus 137 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~---~ 207 (511)
.....+..+...+...|+++.|...++.+.+... .+ ...+..+..+|.+.|++++|...|+++.+ |+ .. +
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYP-FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 3567788888999999999999999999988642 22 24677889999999999999999999865 32 22 3
Q ss_pred hHHHHHHHHHc--------CChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhH
Q 010405 208 YTSAIFGLAMN--------GHSIEAFELFENMKSKGISPDSI-SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDH 278 (511)
Q Consensus 208 ~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 278 (511)
+..+..++... |+.++|.+.|+++... .|+.. ....+..... . ..... ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~------~~~~~---------~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----L------RNRLA---------GK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----H------HHHHH---------HH
Confidence 55556666654 7789999999999875 44432 2222211100 0 00000 11
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCC
Q 010405 279 YACMVDLLGRAGLLEEAENFIASM----PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQ 339 (511)
Q Consensus 279 ~~~li~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 339 (511)
...+...|.+.|++++|...+++. +..| ....+..+..++...|++++|...++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 235667788999999999988876 2233 345788888889999999999998888876555
No 115
>PLN02789 farnesyltranstransferase
Probab=98.43 E-value=0.00014 Score=68.77 Aligned_cols=209 Identities=9% Similarity=-0.036 Sum_probs=144.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHHCC-ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 010405 75 SWNSILGGLVRFGSVDDACRVFNQMPKR---SLVSWVVLISGFAQNG-RPKEALALFREMQSLDLEPNSAILVSLLSACA 150 (511)
Q Consensus 75 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 150 (511)
++..+-..+...++.++|+.+.+++.+. +..+|+.....+...| ++++++..++++.+.. +.+..+|+....++.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 4556666777889999999999998753 4457777777777777 6799999999998875 335667776666666
Q ss_pred hcCCH--HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHc---CCh-
Q 010405 151 QLGAL--DYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMN---GHS- 221 (511)
Q Consensus 151 ~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~---g~~- 221 (511)
+.+.. +.+..+.+.+++.. +-+..+|+...-++.+.|+++++++.++++.+ .|..+|+.....+.+. |..
T Consensus 118 ~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccc
Confidence 66653 67788888888775 45778888888888889999999999998876 4666787776665544 222
Q ss_pred ---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc----CCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHH
Q 010405 222 ---IEAFELFENMKSKGISPDSISYIAVLSACSHL----GWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGR 288 (511)
Q Consensus 222 ---~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 288 (511)
+++++...+++.... -|...|+.+...+... +...+|...+....+ . -+.+......|++.|+.
T Consensus 197 ~~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~-~-~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 197 AMRDSELKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS-K-DSNHVFALSDLLDLLCE 267 (320)
T ss_pred ccHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc-c-cCCcHHHHHHHHHHHHh
Confidence 356666666665432 2556676666666552 334556666666544 1 12345556667776664
No 116
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.41 E-value=4.2e-05 Score=79.56 Aligned_cols=140 Identities=11% Similarity=0.076 Sum_probs=104.7
Q ss_pred CeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHH
Q 010405 204 DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD-SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACM 282 (511)
Q Consensus 204 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 282 (511)
++..+-.|.....+.|..++|..+++...+. .|+ ......+...+.+.+.+++|....++... .-+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 4667777888888888888888888888774 555 44566677788888888888888888876 233346677788
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHH
Q 010405 283 VDLLGRAGLLEEAENFIASM-PMKPD-NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYIL 347 (511)
Q Consensus 283 i~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 347 (511)
..++.+.|++++|.++|++. ...|+ ...|..+..++...|+.++|...|+++.+...+-...|..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 88888888888888888887 23343 5678888888888888888888888888854433344443
No 117
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.41 E-value=3.4e-05 Score=67.77 Aligned_cols=153 Identities=8% Similarity=0.108 Sum_probs=113.6
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 010405 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260 (511)
Q Consensus 181 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 260 (511)
+-.|.+.|+++......+.+..+. . .+...++.++++..+++..+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 455778888777655554433321 0 1122566678888888877753 346778888889999999999999
Q ss_pred HHHHHchhhcCCCC-CHhHHHHHHHHH-HHcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 010405 261 YYFHSMFDVHGIKP-ELDHYACMVDLL-GRAGL--LEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNML 334 (511)
Q Consensus 261 ~~~~~~~~~~~~~p-~~~~~~~li~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 334 (511)
..|++..+ +.| +...+..+..++ .+.|+ .++|.+++++. ...| +...+..+...+...|++++|+..++++
T Consensus 94 ~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999887 334 577788888864 67777 59999999887 4556 5667777888899999999999999999
Q ss_pred hhcCCCCchhH
Q 010405 335 IESDQNHDGRY 345 (511)
Q Consensus 335 ~~~~p~~~~~~ 345 (511)
++..|.+..-+
T Consensus 171 L~l~~~~~~r~ 181 (198)
T PRK10370 171 LDLNSPRVNRT 181 (198)
T ss_pred HhhCCCCccHH
Confidence 99887765443
No 118
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=0.00069 Score=65.60 Aligned_cols=336 Identities=10% Similarity=-0.007 Sum_probs=216.3
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhcCC--CCC-hhHHHHHHHHHHHcCChHHHHHHHccCCC--C-ChhHHHHHHH
Q 010405 8 AYDVFVKNSLIQFYSVCGRVRDARWVFDESD--DLD-VVSWNSMINGYVRNGEILEGLKLFDKMPQ--R-NDVSWNSILG 81 (511)
Q Consensus 8 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~ 81 (511)
++|.+.|+.=..+|++.|++++|++=-.+-. .|+ .-.|+....++.-.|++++|+.-|.+-.+ | |...++.+..
T Consensus 33 p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~ 112 (539)
T KOG0548|consen 33 PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQ 112 (539)
T ss_pred CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHH
Confidence 3477788888888888888888876444333 233 34688888888888999999988888764 2 2222222222
Q ss_pred HH---------------------------------------------------HhcCCHHHHHHHHhhCC----------
Q 010405 82 GL---------------------------------------------------VRFGSVDDACRVFNQMP---------- 100 (511)
Q Consensus 82 ~~---------------------------------------------------~~~g~~~~A~~~~~~~~---------- 100 (511)
++ ....++..|.-++....
T Consensus 113 a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~ 192 (539)
T KOG0548|consen 113 AYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIE 192 (539)
T ss_pred hhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccc
Confidence 22 11111222222221110
Q ss_pred ------CC------------Ch----------hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 010405 101 ------KR------------SL----------VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQL 152 (511)
Q Consensus 101 ------~~------------~~----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 152 (511)
.| |. .-.-.+.++..+..+++.|++-+....... -+..-++....++...
T Consensus 193 ~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~ 270 (539)
T KOG0548|consen 193 ILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLER 270 (539)
T ss_pred cCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhc
Confidence 01 00 124556777778888899999888887754 3444455566678888
Q ss_pred CCHHHHHHHHHHHHHcCCCcc------HHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHH
Q 010405 153 GALDYGNWVYSYIQKKCIKLD------SILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFE 226 (511)
Q Consensus 153 ~~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 226 (511)
|...+....-...++.|...- .....-+..+|.+.++++.|+..|++...+-.. -....+....++++.
T Consensus 271 ~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k 345 (539)
T KOG0548|consen 271 GKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALK 345 (539)
T ss_pred cHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHH
Confidence 888777776666666553211 112222455788889999999999985532111 112233444556666
Q ss_pred HHHHHHhCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 010405 227 LFENMKSKGISPDS-ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PM 304 (511)
Q Consensus 227 ~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 304 (511)
......- +.|.. .-...-...+.+.|++..|...|.++++ ..+-|...|....-+|.+.|.+.+|++-.+.. ..
T Consensus 346 ~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk--r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 346 EAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK--RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh--cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 5555443 33432 2222335667889999999999999987 23556889999999999999999998876655 44
Q ss_pred CCCHH-HHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q 010405 305 KPDNV-IWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVE 354 (511)
Q Consensus 305 ~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 354 (511)
.|+.. .|..=..++....+++.|.+.|.+.++.+|.+......+.+++..
T Consensus 422 ~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 422 DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 55433 555555667777899999999999999999887666666555554
No 119
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.40 E-value=2.4e-05 Score=64.15 Aligned_cols=95 Identities=9% Similarity=-0.011 Sum_probs=83.7
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 010405 276 LDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYV 353 (511)
Q Consensus 276 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 353 (511)
....-.+...+...|++++|..+|+-. ...| +..-|..|..++...|++++|+..|.++..++|+++.++..++.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 444556667788899999999999987 4556 56678888888999999999999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHHHh
Q 010405 354 ETLKGENAEEVRKTMRK 370 (511)
Q Consensus 354 ~~g~~~~A~~~~~~m~~ 370 (511)
..|+.+.|.+.|+....
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999998765
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.36 E-value=4.7e-05 Score=67.01 Aligned_cols=151 Identities=11% Similarity=0.011 Sum_probs=81.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCC
Q 010405 212 IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGL 291 (511)
Q Consensus 212 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 291 (511)
-..+...|+.+....+........ .-|.......+......|++.+|...+.+... .-++|...|+.+.-+|.+.|+
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccC
Confidence 334444555555555544433211 11222333355555556666666666666554 344555666666666666666
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 010405 292 LEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVR 365 (511)
Q Consensus 292 ~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 365 (511)
+++|..-|.+. .+.| ++...+.|...+.-.|+.+.|+.++.......+.++.+-..|..+-...|++++|..+.
T Consensus 150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 150 FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 66666555544 2333 33445555555666666666666666666655555556666666666666666665544
No 121
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.36 E-value=8.5e-05 Score=78.19 Aligned_cols=233 Identities=8% Similarity=-0.002 Sum_probs=115.1
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 010405 72 NDVSWNSILGGLVRFGSVDDACRVFNQMPK--RS-LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148 (511)
Q Consensus 72 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 148 (511)
+...+..|+..|...+++++|.++.+...+ |+ +..|-.+...+.+.++.+++..+ .+.. .
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~---------------~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID---------------S 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh---------------h
Confidence 445566666666666666666666664432 22 23333344455555555554444 2221 1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHH
Q 010405 149 CAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAF 225 (511)
Q Consensus 149 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 225 (511)
.....++..+..+...+... ..+...+..|..+|-+.|+.++|.++++++.+ .|+.+.|.+...|+.. +.++|+
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred cccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 11112222222222233322 12233444555555555666655555555543 2444555555555555 555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCC
Q 010405 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMK 305 (511)
Q Consensus 226 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 305 (511)
+++.+.... +...+++..+.++|..+.. ..+-+...+..+.... ...++..
T Consensus 170 ~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki------------~~~~~~~ 220 (906)
T PRK14720 170 TYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKV------------LGHREFT 220 (906)
T ss_pred HHHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHH------------Hhhhccc
Confidence 555544332 3333445555555555544 1111111111111111 1111222
Q ss_pred CCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 010405 306 PDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYV 353 (511)
Q Consensus 306 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 353 (511)
.-+.++-.+-..|...++++++..+++.+++.+|.|..+..-++..|.
T Consensus 221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 221 RLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 234455555566777778888888888888888877777777777765
No 122
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.34 E-value=8.6e-05 Score=76.51 Aligned_cols=349 Identities=12% Similarity=0.047 Sum_probs=203.3
Q ss_pred chHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHccCCCCC-----hhHHHHHHHHH
Q 010405 12 FVKNSLIQFYSVCGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRN-----DVSWNSILGGL 83 (511)
Q Consensus 12 ~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~li~~~ 83 (511)
..|..|...|...-+...|.+.|+... ..|..++..+...|++..+++.|..+.-..-+.+ ...|....-.|
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 468888888888888888888888655 4567788889999999999999988844333322 12233344557
Q ss_pred HhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHH--HHHHHhcCCHHHH
Q 010405 84 VRFGSVDDACRVFNQMPK---RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL--LSACAQLGALDYG 158 (511)
Q Consensus 84 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l--l~~~~~~~~~~~a 158 (511)
.+.++...|..-|+...+ +|...|..++.+|...|++..|+++|.+... ++|+. +|... ...-+..|.+.++
T Consensus 573 Lea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s-~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLS-KYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred cCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHh-HHHHHHHHHHHHHhhhHHHH
Confidence 778888888888887654 3667888999999999999999999988766 35544 23322 2224567888888
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHH-------hcCCHHHHHHHHHhcCC-----------CCeeehHHHHHHHHH---
Q 010405 159 NWVYSYIQKKCIKLDSILCAALIDMYA-------KCGSIDLAMQVFHSYGD-----------KDVSAYTSAIFGLAM--- 217 (511)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~li~~y~-------~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~--- 217 (511)
...++..+... .......+.|...+. -.|-..+|..+|+.-.+ .+...|-.+..++.-
T Consensus 650 ld~l~~ii~~~-s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q 728 (1238)
T KOG1127|consen 650 LDALGLIIYAF-SLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQ 728 (1238)
T ss_pred HHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHH
Confidence 88887776531 111122222222222 22333333333332211 122233332222111
Q ss_pred cC--ChH-HHHH-HHHHHHhCCCCC--------------------CHHHHHHHHHHHhc-------c-CCHHHHHHHHHH
Q 010405 218 NG--HSI-EAFE-LFENMKSKGISP--------------------DSISYIAVLSACSH-------L-GWVEKGFYYFHS 265 (511)
Q Consensus 218 ~g--~~~-~A~~-~~~~m~~~g~~p--------------------~~~t~~~ll~~~~~-------~-g~~~~a~~~~~~ 265 (511)
.. -+. -.+. ++.+....+.-| +..+|..++..|.+ . .+...|...+..
T Consensus 729 ~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~Kk 808 (1238)
T KOG1127|consen 729 EEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKK 808 (1238)
T ss_pred hcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHH
Confidence 00 000 0000 111111111111 12223233222211 1 122345555555
Q ss_pred chhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCch
Q 010405 266 MFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDG 343 (511)
Q Consensus 266 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 343 (511)
..+. ..-+...|+.|.-+ ...|.+.-|.--|-+. -..| ...+|..+.-.+....+++-|...|.++..+.|.+..
T Consensus 809 aV~L--~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~ 885 (1238)
T KOG1127|consen 809 AVSL--CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLV 885 (1238)
T ss_pred HHHH--hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhH
Confidence 5441 12234445555443 4456666555544332 2233 5667888877888899999999999999999999988
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHH
Q 010405 344 RYILLSNIYVETLKGENAEEVRKT 367 (511)
Q Consensus 344 ~~~~l~~~~~~~g~~~~A~~~~~~ 367 (511)
.|......-...|+.-++..++..
T Consensus 886 ~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 886 QWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHh
Confidence 888777777788877777777755
No 123
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.32 E-value=0.0025 Score=65.56 Aligned_cols=351 Identities=16% Similarity=0.137 Sum_probs=188.1
Q ss_pred HhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHccCCC--CChhHHHHHHHHHHhcCCHH----HH
Q 010405 22 SVCGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ--RNDVSWNSILGGLVRFGSVD----DA 92 (511)
Q Consensus 22 ~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~----~A 92 (511)
.+.|+.++|..+++... ..|..+...+-..|...+..++|..+|++..+ |+......+..+|.+.+++. .|
T Consensus 54 ~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa 133 (932)
T KOG2053|consen 54 FRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAA 133 (932)
T ss_pred HHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888887544 34777888888888888888888888888876 66666666777777776654 36
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHHC-CCh---------hHHHHHHHHHHHCC-CCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 010405 93 CRVFNQMPKRSLVSWVVLISGFAQN-GRP---------KEALALFREMQSLD-LEPNSAILVSLLSACAQLGALDYGNWV 161 (511)
Q Consensus 93 ~~~~~~~~~~~~~~~~~li~~~~~~-g~~---------~~A~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~ 161 (511)
.+++...+++--..|+. ++...+. ..+ .-|.+.++.+.+.+ ---+..-...-+..+...|.+++|..+
T Consensus 134 ~~LyK~~pk~~yyfWsV-~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~ 212 (932)
T KOG2053|consen 134 LQLYKNFPKRAYYFWSV-ISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEF 212 (932)
T ss_pred HHHHHhCCcccchHHHH-HHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHH
Confidence 66676665554445543 3333332 112 22344455554433 111222222333445667778888887
Q ss_pred H-HHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHH----------------cCChHHH
Q 010405 162 Y-SYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAM----------------NGHSIEA 224 (511)
Q Consensus 162 ~-~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----------------~g~~~~A 224 (511)
+ ....+.-...+...-+--++.+.+.+++.+..++-.++..++..-|...+..+.+ .+..+..
T Consensus 213 l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~ 292 (932)
T KOG2053|consen 213 LAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDEC 292 (932)
T ss_pred HHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHH
Confidence 7 3333333334455556667777888888776666555544222113333322111 1112222
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHH---hccCCHHHHHHHHH-Hchhh--------------------------cCCCC
Q 010405 225 FELFENMKSKGISPDSISYIAVLSAC---SHLGWVEKGFYYFH-SMFDV--------------------------HGIKP 274 (511)
Q Consensus 225 ~~~~~~m~~~g~~p~~~t~~~ll~~~---~~~g~~~~a~~~~~-~~~~~--------------------------~~~~p 274 (511)
.+..++..... ....|.+-+.+. -.-|+.+++...|- +.-.. -+..+
T Consensus 293 ~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~ 369 (932)
T KOG2053|consen 293 IEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEMLSYYFKKFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADD 369 (932)
T ss_pred HHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHHHHHHHHhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCC
Confidence 22222222111 111122222222 22345544332221 11000 00111
Q ss_pred CHh-------HHHHHHHHHHHcCCH-----HHHHHHHHhC------C------CCCCH---------HHHHHHHHHHHhc
Q 010405 275 ELD-------HYACMVDLLGRAGLL-----EEAENFIASM------P------MKPDN---------VIWGTLLGACRVH 321 (511)
Q Consensus 275 ~~~-------~~~~li~~~~~~g~~-----~~A~~~~~~~------~------~~p~~---------~~~~~ll~~~~~~ 321 (511)
+.. -+.+.+....-.|.+ +.-..++++. + .-|.. .+.+.|+..+.+.
T Consensus 370 ~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rkt 449 (932)
T KOG2053|consen 370 DSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKT 449 (932)
T ss_pred cchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhc
Confidence 111 022222222223321 1122222111 1 11221 2346677888888
Q ss_pred Cchh---HHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCccC
Q 010405 322 RNAE---MGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRA 376 (511)
Q Consensus 322 g~~~---~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~ 376 (511)
++.. +|+-+++......|.|..+-..|+.+|.-.|-...|.++++.+.-+.+..+
T Consensus 450 nd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~D 507 (932)
T KOG2053|consen 450 NDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTD 507 (932)
T ss_pred CcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhc
Confidence 7755 677777777778999988888999999999999999999999987776644
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.27 E-value=0.00021 Score=63.05 Aligned_cols=152 Identities=16% Similarity=0.101 Sum_probs=92.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 010405 77 NSILGGLVRFGSVDDACRVFNQMPK---RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153 (511)
Q Consensus 77 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 153 (511)
..+-..+.-.|+-+.+..+..+... .|....+..+....+.|++.+|+..|++..... ++|..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 4444555556666665555555321 233445556666667777777777776666543 556667777777777777
Q ss_pred CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHH
Q 010405 154 ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFEN 230 (511)
Q Consensus 154 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 230 (511)
++++|..-|.+..+.. +-+....|.|.-.|.-.|+.+.|..++..... .|...-..+.......|++++|.++..+
T Consensus 149 r~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 149 RFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred ChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 7777777776666653 33455566666666666777777777665432 3555555666666667777777666544
No 125
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=0.00093 Score=59.05 Aligned_cols=249 Identities=13% Similarity=0.048 Sum_probs=127.5
Q ss_pred HHhcCCHHHHHHHHhhCC-C-CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHH-
Q 010405 83 LVRFGSVDDACRVFNQMP-K-RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGN- 159 (511)
Q Consensus 83 ~~~~g~~~~A~~~~~~~~-~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~- 159 (511)
|.-.|++..+...-+... . .++..---+-++|...|++...+.- .... -.|....+..+......-++.+.-.
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~e---I~~~-~~~~lqAvr~~a~~~~~e~~~~~~~~ 93 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISE---IKEG-KATPLQAVRLLAEYLELESNKKSILA 93 (299)
T ss_pred HHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccc---cccc-cCChHHHHHHHHHHhhCcchhHHHHH
Confidence 333455555554433322 2 2333333455666666655433221 1111 1222333333333333333333332
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC
Q 010405 160 WVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239 (511)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 239 (511)
.+.+.+.......+......-...|...|++++|.+..+... +..+.-.=+..+.+..+.+-|.+.+++|.+-. +
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---e 168 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQID---E 168 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---h
Confidence 233444443333343444444556777788888877777632 22222222344556667777777777776532 4
Q ss_pred HHHHHHHHHHHhc----cCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHH
Q 010405 240 SISYIAVLSACSH----LGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM--PMKPDNVIWGT 313 (511)
Q Consensus 240 ~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ 313 (511)
..|.+-|..++.+ .+.+..|.-+|++|.+ ..+|++.+.+-...+....|++++|..++++. ....++.+...
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~N 246 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLAN 246 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 5566655555432 3456677777777765 45666666666666666777777777777665 22234455555
Q ss_pred HHHHHHhcCch-hHHHHHHHHHhhcCCCCc
Q 010405 314 LLGACRVHRNA-EMGQRIGNMLIESDQNHD 342 (511)
Q Consensus 314 ll~~~~~~g~~-~~a~~~~~~~~~~~p~~~ 342 (511)
++..-...|.. +.-.+...++....|..+
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 55444444433 444556666666666543
No 126
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.0016 Score=67.61 Aligned_cols=298 Identities=15% Similarity=0.126 Sum_probs=153.2
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHccCC-CCChhH-----HHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHH
Q 010405 40 LDVVSWNSMINGYVRNGEILEGLKLFDKMP-QRNDVS-----WNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISG 113 (511)
Q Consensus 40 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~~-----~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 113 (511)
.|+..-...+.++..++-+.+-+++++++. ++++++ -|.|+-...+ .+.....+..+++..-|.. .+...
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~---~ia~i 1057 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAP---DIAEI 1057 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCch---hHHHH
Confidence 466667778889999999999999998885 343332 2333322222 2333444444444332211 12233
Q ss_pred HHHCCChhHHHHHHHHHHHCC---------------------CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 010405 114 FAQNGRPKEALALFREMQSLD---------------------LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKL 172 (511)
Q Consensus 114 ~~~~g~~~~A~~~~~~m~~~~---------------------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 172 (511)
...++-+++|..+|++.--.+ -.-.+..|+.+..+-.+.|...+|.+-|-+ ..
T Consensus 1058 ai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik------ad 1131 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK------AD 1131 (1666)
T ss_pred HhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh------cC
Confidence 344455556665555431100 001223344444444444444444333211 12
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010405 173 DSILCAALIDMYAKCGSIDLAMQVFHSYGD--KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250 (511)
Q Consensus 173 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 250 (511)
|+..|.-.++...+.|.+++-.+++....+ +....=+.+|-+|++.++..+..+++ ..||......+.+-|
T Consensus 1132 Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrc 1204 (1666)
T KOG0985|consen 1132 DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRC 1204 (1666)
T ss_pred CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHH
Confidence 444555555555555555555555443332 12222344555555555554444433 234555555555555
Q ss_pred hccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHH------------------
Q 010405 251 SHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWG------------------ 312 (511)
Q Consensus 251 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~------------------ 312 (511)
...|.++.|.-+|... ..|..|...+...|.++.|.+--++.. +..+|.
T Consensus 1205 f~~~~y~aAkl~y~~v----------SN~a~La~TLV~LgeyQ~AVD~aRKAn---s~ktWK~VcfaCvd~~EFrlAQiC 1271 (1666)
T KOG0985|consen 1205 FEEKMYEAAKLLYSNV----------SNFAKLASTLVYLGEYQGAVDAARKAN---STKTWKEVCFACVDKEEFRLAQIC 1271 (1666)
T ss_pred hhhhhhHHHHHHHHHh----------hhHHHHHHHHHHHHHHHHHHHHhhhcc---chhHHHHHHHHHhchhhhhHHHhc
Confidence 5555555555544433 245566666666777766666555442 333443
Q ss_pred ------------HHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 010405 313 ------------TLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTM 368 (511)
Q Consensus 313 ------------~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 368 (511)
-|+.-|...|-+++-+.+++..+.+.......|.-|+-.|++- +.++..+.++..
T Consensus 1272 GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LF 1338 (1666)
T KOG0985|consen 1272 GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLF 1338 (1666)
T ss_pred CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHH
Confidence 3445555666666666666666666666666777777777665 445555544443
No 127
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.25 E-value=0.00027 Score=71.44 Aligned_cols=259 Identities=14% Similarity=0.110 Sum_probs=148.4
Q ss_pred CCChhHHHHHHH--HHHHcCChHHHHHHHccCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-C----------Ch-
Q 010405 39 DLDVVSWNSMIN--GYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPK-R----------SL- 104 (511)
Q Consensus 39 ~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~----------~~- 104 (511)
.-|..+-.+++. -|.--|+.+.|.+-.+-+ .+..+|..+.+++.+..++|-|.-.+-.|.. + |.
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~I--kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFI--KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE 800 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHH--hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence 446666666653 356667777776665544 3456788888888888877777777666642 0 11
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 010405 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMY 184 (511)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 184 (511)
..-.-..-.-.+.|..++|+.+|++-++ |..|=..|...|.+++|.++-+.--+..+ ..||.....-+
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~L 868 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYL 868 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHH
Confidence 1111122223456677777777776654 22333445566777777766443222111 12333344444
Q ss_pred HhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010405 185 AKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264 (511)
Q Consensus 185 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 264 (511)
-..++++.|++.|++...+-...+..|. .++.....+.+++ -|...|..........|++|.|+.+|.
T Consensus 869 ear~Di~~AleyyEK~~~hafev~rmL~------e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl~~Y~ 936 (1416)
T KOG3617|consen 869 EARRDIEAALEYYEKAGVHAFEVFRMLK------EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDAALSFYS 936 (1416)
T ss_pred HhhccHHHHHHHHHhcCChHHHHHHHHH------hChHHHHHHHHhc------cchHHHHHHHHHHhcccchHHHHHHHH
Confidence 4566777777777755432211111111 1111111122222 244555556666667788888888887
Q ss_pred HchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhh
Q 010405 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIE 336 (511)
Q Consensus 265 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (511)
.... |-+++...+-+|+.++|-++-++-+ |......|...|-..|++.+|..+|.++..
T Consensus 937 ~A~D----------~fs~VrI~C~qGk~~kAa~iA~esg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 937 SAKD----------YFSMVRIKCIQGKTDKAARIAEESG---DKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred Hhhh----------hhhheeeEeeccCchHHHHHHHhcc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 7764 4456667777788888887777765 555555677777777888888777776655
No 128
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.24 E-value=5.3e-05 Score=73.05 Aligned_cols=122 Identities=13% Similarity=0.071 Sum_probs=101.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 010405 243 YIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRV 320 (511)
Q Consensus 243 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 320 (511)
...|+..+...++++.|..+|+++.+. .|+ ....++..+...++-.+|.+++++. ...| +......-...|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 445667777788999999999999872 355 4556888888889999999998876 3334 55556555666899
Q ss_pred cCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 010405 321 HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMR 369 (511)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 369 (511)
.++++.|+.+.+++.+..|.+..+|..|+.+|...|++++|+-.++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999998876
No 129
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.23 E-value=2.2e-06 Score=51.69 Aligned_cols=35 Identities=43% Similarity=0.758 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH
Q 010405 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS 139 (511)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 139 (511)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999998873
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.22 E-value=0.00047 Score=66.09 Aligned_cols=112 Identities=16% Similarity=0.044 Sum_probs=49.4
Q ss_pred HHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 010405 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDL 192 (511)
Q Consensus 113 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 192 (511)
.+...|++++|+..++.+... .+-|..........+...++..+|.+.++.++... |......-.+..+|.+.|++.+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHH
Confidence 333444555555555444433 12233333333444444555555555555444431 1113334444445555555555
Q ss_pred HHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHH
Q 010405 193 AMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFE 226 (511)
Q Consensus 193 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 226 (511)
|+.++++... .|...|..|..+|...|+..++..
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH
Confidence 5555444432 234445555555555554444443
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.21 E-value=0.0006 Score=72.03 Aligned_cols=168 Identities=13% Similarity=0.078 Sum_probs=114.1
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHccCCC--CCh-hHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHH
Q 010405 39 DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ--RND-VSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFA 115 (511)
Q Consensus 39 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 115 (511)
+.+...|..|+..+...+++++|.++.+...+ |+. ..|-.+...|.+.++.+++..+ .++....
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~ 94 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFS 94 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcc
Confidence 34667888999999999999999999886654 433 2333333466667775555444 3444444
Q ss_pred HCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 010405 116 QNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ 195 (511)
Q Consensus 116 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~ 195 (511)
...++.-+..++..|... .-+..++..+..+|.+.|+.+++.++++++++.. +-|+.+.|.+...|+.. ++++|++
T Consensus 95 ~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~ 170 (906)
T PRK14720 95 QNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAIT 170 (906)
T ss_pred cccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHH
Confidence 444554444444455443 2344577778888888888888888888888876 55778888888888888 8888888
Q ss_pred HHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhC
Q 010405 196 VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK 234 (511)
Q Consensus 196 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 234 (511)
++.+.. ..|...+++.++.++|.++...
T Consensus 171 m~~KAV-----------~~~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 171 YLKKAI-----------YRFIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHH-----------HHHHhhhcchHHHHHHHHHHhc
Confidence 776543 3366666777777777777664
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.21 E-value=0.00016 Score=69.20 Aligned_cols=126 Identities=17% Similarity=0.107 Sum_probs=105.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHH
Q 010405 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKPD-NVIWGTLLGAC 318 (511)
Q Consensus 241 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~ 318 (511)
.-|..-+ .+...|..+.|+..++.+.+ ..+-|+.......+.+.+.++.++|.+.++++ ...|+ ...+-.+..++
T Consensus 308 a~YG~A~-~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~al 384 (484)
T COG4783 308 AQYGRAL-QTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQAL 384 (484)
T ss_pred HHHHHHH-HHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 3444433 34567899999999999887 34456777778889999999999999999987 56676 56777788899
Q ss_pred HhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 010405 319 RVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMR 369 (511)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 369 (511)
.+.|++.+|+++++.....+|+++..|..|+.+|...|+..+|.....++.
T Consensus 385 l~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 385 LKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988886664
No 133
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.19 E-value=3.1e-06 Score=51.02 Aligned_cols=35 Identities=43% Similarity=0.691 Sum_probs=31.3
Q ss_pred eehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH
Q 010405 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS 240 (511)
Q Consensus 206 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 240 (511)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47899999999999999999999999999999873
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.18 E-value=3e-05 Score=63.83 Aligned_cols=96 Identities=15% Similarity=0.183 Sum_probs=74.3
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 010405 276 LDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYV 353 (511)
Q Consensus 276 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 353 (511)
......+...+...|++++|.+.++.. ...| +...|..+...+...|+++.|...++++.+..|+++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 445566777777888888888888776 3334 55677777777888888888888888888888888888888888888
Q ss_pred HcCCchHHHHHHHHHHhC
Q 010405 354 ETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 354 ~~g~~~~A~~~~~~m~~~ 371 (511)
..|++++|.+.++...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 888888888888777663
No 135
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.17 E-value=0.0004 Score=72.42 Aligned_cols=143 Identities=11% Similarity=0.045 Sum_probs=117.7
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC-HHHHHH
Q 010405 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD--K-DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD-SISYIA 245 (511)
Q Consensus 170 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ 245 (511)
.+.++..+..|.......|++++|..+++...+ | +...+..+...+.+.+++++|+..+++.... .|+ ......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 466788999999999999999999999999876 4 4456788899999999999999999999885 455 455666
Q ss_pred HHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 010405 246 VLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM--PMKPDNVIWGTLLG 316 (511)
Q Consensus 246 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~ 316 (511)
+..++.+.|+.++|..+|+++.. ..+-+...+..+..++-..|+.++|...|++. ...|....|+.++.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 67788999999999999999987 22334788999999999999999999999987 33455666665543
No 136
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.16 E-value=8.3e-05 Score=71.72 Aligned_cols=117 Identities=15% Similarity=0.091 Sum_probs=50.3
Q ss_pred HHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 010405 82 GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161 (511)
Q Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 161 (511)
.+...++++.|..+|+++.+.++.....++..+...++..+|++++.+..+.. +-+...+..-...+...++.+.|..+
T Consensus 178 ~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~lAL~i 256 (395)
T PF09295_consen 178 YLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYELALEI 256 (395)
T ss_pred HHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 33334444444444444444433333344444444444444444444444321 22333333333334444444444444
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 010405 162 YSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200 (511)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 200 (511)
.+++.+.. |.+..+|..|..+|.+.|+++.|+..++.+
T Consensus 257 Ak~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 257 AKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 44444431 223334444444444444444444444443
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=0.0007 Score=59.35 Aligned_cols=168 Identities=14% Similarity=0.174 Sum_probs=115.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHH---HHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010405 176 LCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSA---IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSH 252 (511)
Q Consensus 176 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 252 (511)
++..++-+...+|+.+.|..+++.+..+=.-++... ..-+-..|++++|+++++..++.+ +.|.+++..=+...-.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 344444455556777777777666554222222111 112334788889999999888875 3356677666666666
Q ss_pred cCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh---cCchhHH
Q 010405 253 LGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRV---HRNAEMG 327 (511)
Q Consensus 253 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~---~g~~~~a 327 (511)
.|+--+|++-+....+ .+..|...|.-+.+.|...|++++|.--++++ -.+| ++..+..+...+.. ..+.+.+
T Consensus 133 ~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred cCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7777788888888876 56788999999999999999999999999988 4456 44555566655332 3467789
Q ss_pred HHHHHHHhhcCCCCchhHH
Q 010405 328 QRIGNMLIESDQNHDGRYI 346 (511)
Q Consensus 328 ~~~~~~~~~~~p~~~~~~~ 346 (511)
.+.|.+.+++.|.+...+.
T Consensus 211 rkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 211 RKYYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHHHHhChHhHHHHH
Confidence 9999999999986554444
No 138
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.12 E-value=0.00019 Score=74.09 Aligned_cols=322 Identities=13% Similarity=0.088 Sum_probs=168.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHccCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh-----hHHHHHHHHH
Q 010405 43 VSWNSMINGYVRNGEILEGLKLFDKMPQ---RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSL-----VSWVVLISGF 114 (511)
Q Consensus 43 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~li~~~ 114 (511)
..|..|...|...-+...|.+.|++..+ .|...+..+.+.|++..+++.|..+.-...+++. ..|-...-.|
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 4577777777666677777777777765 3455667777778888888877777444333322 1233444556
Q ss_pred HHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 010405 115 AQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194 (511)
Q Consensus 115 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 194 (511)
...++..+|..-|+...+.. +.|...|..+..+|...|....|.++|.++.... |.+...---..-+-+..|.+.+|.
T Consensus 573 Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-P~s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-PLSKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-cHhHHHHHHHHHHHHHhhhHHHHH
Confidence 67777777777777776654 3366777788888888888888888887776643 112222122223345567777777
Q ss_pred HHHHhcCCC----------CeeehHHHHHHHHHcCChHHHHHHHHH-------HHhCCCCCCHHHHHHHHHHHh------
Q 010405 195 QVFHSYGDK----------DVSAYTSAIFGLAMNGHSIEAFELFEN-------MKSKGISPDSISYIAVLSACS------ 251 (511)
Q Consensus 195 ~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~A~~~~~~-------m~~~g~~p~~~t~~~ll~~~~------ 251 (511)
..+..+... -..++-.+...+...|-..+|...++. .......-+...|..+-.+|.
T Consensus 651 d~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e 730 (1238)
T KOG1127|consen 651 DALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEE 730 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhc
Confidence 776655420 111222222222222322222222222 221111112222222222221
Q ss_pred -----------------ccCCH---H---HHHHHHHHchhhcCCCCCHhHHHHHHHHHHH----cC----CHHHHHHHHH
Q 010405 252 -----------------HLGWV---E---KGFYYFHSMFDVHGIKPELDHYACMVDLLGR----AG----LLEEAENFIA 300 (511)
Q Consensus 252 -----------------~~g~~---~---~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g----~~~~A~~~~~ 300 (511)
..+.. | .|.+.+-.-.+ +..+..+|..|+.-|.+ +| +...|..-+.
T Consensus 731 ~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls---l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~K 807 (1238)
T KOG1127|consen 731 PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS---LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCK 807 (1238)
T ss_pred ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH---HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHH
Confidence 11111 1 01111111111 11122233333333333 11 1224444444
Q ss_pred hC-CCC-CCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 301 SM-PMK-PDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 301 ~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
.. ... .+..+|+.|.-. ...|++.-+.-.|-+....+|.+..+|..++-.+.+..+++-|...+.....
T Consensus 808 kaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 808 KAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 43 222 345566555443 5556777777777777777777777777777777777777777777776654
No 139
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.11 E-value=5.3e-06 Score=49.62 Aligned_cols=33 Identities=33% Similarity=0.621 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCC
Q 010405 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEP 137 (511)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 137 (511)
.+||.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
No 140
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.08 E-value=0.013 Score=57.13 Aligned_cols=158 Identities=11% Similarity=0.042 Sum_probs=94.3
Q ss_pred eehHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHH
Q 010405 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGISP-DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVD 284 (511)
Q Consensus 206 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 284 (511)
.+|-..+..-.+..-...|..+|.+..+.+..+ +.....+++.-++ +++.+-|.++|+.-.+.+| -++.--...++
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~--d~p~yv~~Yld 443 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFG--DSPEYVLKYLD 443 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 356666666666666777777777777766666 4455556665444 4667777777776665333 22334455666
Q ss_pred HHHHcCCHHHHHHHHHhC-C--CCC--CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC----chhHHHHHHHHHHc
Q 010405 285 LLGRAGLLEEAENFIASM-P--MKP--DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH----DGRYILLSNIYVET 355 (511)
Q Consensus 285 ~~~~~g~~~~A~~~~~~~-~--~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~ 355 (511)
-+...++-..|..+|++. + +.| ....|..+|.--..-|+...+.++-++....-|.+ ...-..+++.|.-.
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~ 523 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGIL 523 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhc
Confidence 667777777777777766 1 223 23577777777777777777777777766644411 12233445555555
Q ss_pred CCchHHHHHHH
Q 010405 356 LKGENAEEVRK 366 (511)
Q Consensus 356 g~~~~A~~~~~ 366 (511)
+.+..-..-++
T Consensus 524 d~~~c~~~elk 534 (656)
T KOG1914|consen 524 DLYPCSLDELK 534 (656)
T ss_pred ccccccHHHHH
Confidence 55444333333
No 141
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.06 E-value=0.0087 Score=58.30 Aligned_cols=73 Identities=18% Similarity=0.213 Sum_probs=60.0
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhcCCC---CChhHHHHHHHHHHHcCChHHHHHHHccCCC--CChhHHHHHHH
Q 010405 8 AYDVFVKNSLIQFYSVCGRVRDARWVFDESDD---LDVVSWNSMINGYVRNGEILEGLKLFDKMPQ--RNDVSWNSILG 81 (511)
Q Consensus 8 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~ 81 (511)
+.|..+|+.||+-+... .+++++..++++.. .....|..-|..-.+..+++...++|.+... -+...|..-|+
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 45888999999988777 99999999998773 3667899999999999999999999998764 45666666554
No 142
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=0.0021 Score=56.89 Aligned_cols=248 Identities=13% Similarity=0.041 Sum_probs=120.4
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhcCC-C-CChhHHHHHHHHHHHcCChHHHHHHHccCCCCChhHHHHHHHHHHhc
Q 010405 9 YDVFVKNSLIQFYSVCGRVRDARWVFDESD-D-LDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRF 86 (511)
Q Consensus 9 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~-~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~ 86 (511)
|+-..|+.-=.. -.|.+..++..-.... . .++..---+-++|...|.+...+.-...-..|.......+-.....-
T Consensus 8 ~~d~LF~iRn~f--Y~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e 85 (299)
T KOG3081|consen 8 PEDELFNIRNYF--YLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELE 85 (299)
T ss_pred cchhHHHHHHHH--HhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCc
Confidence 443444433333 3466666665443222 2 33334444556666666654444333332223333332222222223
Q ss_pred CCHHHHH-HHHhhCCCC----ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 010405 87 GSVDDAC-RVFNQMPKR----SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161 (511)
Q Consensus 87 g~~~~A~-~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 161 (511)
++.++-. ++.+.+..+ +......-...|++.|++++|++...... +......=...+.+..+++.|++.
T Consensus 86 ~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~ 159 (299)
T KOG3081|consen 86 SNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKE 159 (299)
T ss_pred chhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333322 233333322 21222222345777788888877765521 222333334445666677777777
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHH----hcCCHHHHHHHHHhcCCCC---eeehHHHHHHHHHcCChHHHHHHHHHHHhC
Q 010405 162 YSYIQKKCIKLDSILCAALIDMYA----KCGSIDLAMQVFHSYGDKD---VSAYTSAIFGLAMNGHSIEAFELFENMKSK 234 (511)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~li~~y~----~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 234 (511)
+++|.+.. +..+.+-|..++. ..+.+.+|.-+|++|.++. ..+.|-+..++...|++++|..+++..+..
T Consensus 160 lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 160 LKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred HHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 77777642 3344444444443 3455666777777766633 333344455555666677777666666655
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHH-HHHHHHchh
Q 010405 235 GISPDSISYIAVLSACSHLGWVEKG-FYYFHSMFD 268 (511)
Q Consensus 235 g~~p~~~t~~~ll~~~~~~g~~~~a-~~~~~~~~~ 268 (511)
..+ ++.|...++-+-...|...++ .+.+.++..
T Consensus 237 d~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 237 DAK-DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred cCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 332 455555555544455544332 334444443
No 143
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.02 E-value=0.00021 Score=58.75 Aligned_cols=113 Identities=11% Similarity=0.014 Sum_probs=86.4
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 010405 227 LFENMKSKGISPD-SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PM 304 (511)
Q Consensus 227 ~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 304 (511)
+|++.... .|+ ......+...+...|+.++|.+.|+.+... .+.+...+..+...+.+.|++++|...++.. ..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555443 343 344556677788889999999999888762 2446778888899999999999999988876 34
Q ss_pred CC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCch
Q 010405 305 KP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDG 343 (511)
Q Consensus 305 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 343 (511)
.| +...+..+...+...|+.++|...++++.+..|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 44 5667777778889999999999999999999997754
No 144
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.00 E-value=1e-05 Score=48.37 Aligned_cols=33 Identities=30% Similarity=0.594 Sum_probs=25.0
Q ss_pred eehHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 010405 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGISP 238 (511)
Q Consensus 206 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 238 (511)
.+|++++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777776
No 145
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.98 E-value=0.01 Score=56.02 Aligned_cols=26 Identities=12% Similarity=-0.022 Sum_probs=21.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhcCC
Q 010405 13 VKNSLIQFYSVCGRVRDARWVFDESD 38 (511)
Q Consensus 13 ~~~~li~~~~~~g~~~~A~~~f~~~~ 38 (511)
+|..+...-..+|+.+-|..+.+.=+
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~~Ep 27 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLELEP 27 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHcCC
Confidence 57778888889999999999987533
No 146
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.91 E-value=0.00014 Score=54.83 Aligned_cols=92 Identities=18% Similarity=0.123 Sum_probs=73.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcC
Q 010405 279 YACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETL 356 (511)
Q Consensus 279 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 356 (511)
+..+...+...|++++|.+.+++. ...| +...+..+...+...+++++|.+.++......|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455667777888888888888776 3344 33566677777888889999999999988888888778888888999999
Q ss_pred CchHHHHHHHHHHh
Q 010405 357 KGENAEEVRKTMRK 370 (511)
Q Consensus 357 ~~~~A~~~~~~m~~ 370 (511)
++++|...++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999988877764
No 147
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.89 E-value=0.00052 Score=57.12 Aligned_cols=114 Identities=12% Similarity=-0.012 Sum_probs=64.7
Q ss_pred cCCHHHHHHHHHHchhhcCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCchhH
Q 010405 253 LGWVEKGFYYFHSMFDVHGIKP-ELDHYACMVDLLGRAGLLEEAENFIASM-PMKPDN----VIWGTLLGACRVHRNAEM 326 (511)
Q Consensus 253 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~ 326 (511)
.++...+...++.+.+.++-.| .....-.+...+...|++++|...|+.. ...||. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5666666666666665322111 1223334556666677777777777665 212332 123334555667777777
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 010405 327 GQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKT 367 (511)
Q Consensus 327 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 367 (511)
|+..++... ..+..+..+..++++|.+.|++++|...|+.
T Consensus 104 Al~~L~~~~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIP-DEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhcc-CcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777775532 2233345566777777777777777777654
No 148
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=0.0018 Score=56.91 Aligned_cols=162 Identities=13% Similarity=0.061 Sum_probs=125.0
Q ss_pred hHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHH
Q 010405 208 YTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVL-SACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLL 286 (511)
Q Consensus 208 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 286 (511)
|..++-+....|+.+.|...++++... + |.+.-...+= --+...|..++|.++++.+.++ -+.|..++-.-+.+.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAil 130 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHHH
Confidence 334455667789999999999998775 3 4443222221 1245679999999999999973 355677777777777
Q ss_pred HHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcC---CchHH
Q 010405 287 GRAGLLEEAENFIASM--PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETL---KGENA 361 (511)
Q Consensus 287 ~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A 361 (511)
-..|+.-+|++-+.+. .+-.|...|.-+...|...|+++.|.-.+++++-..|.++..+..++..+...| +.+-|
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7788888888877665 344699999999999999999999999999999999999999999999887766 45567
Q ss_pred HHHHHHHHhCCC
Q 010405 362 EEVRKTMRKRKI 373 (511)
Q Consensus 362 ~~~~~~m~~~g~ 373 (511)
.+++.+..+...
T Consensus 211 rkyy~~alkl~~ 222 (289)
T KOG3060|consen 211 RKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHhCh
Confidence 778877766443
No 149
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.85 E-value=0.001 Score=55.32 Aligned_cols=112 Identities=15% Similarity=0.085 Sum_probs=45.9
Q ss_pred CCChhHHHHHHHHHHHCCCCCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc--HHHHHHHHHHHHhcCCHH
Q 010405 117 NGRPKEALALFREMQSLDLEPN---SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD--SILCAALIDMYAKCGSID 191 (511)
Q Consensus 117 ~g~~~~A~~~~~~m~~~~~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~y~~~g~~~ 191 (511)
.++...+...++.+.... +.+ ......+...+...|++++|...|+.+......+. ......|...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 445555555555554432 111 11222233444445555555555555554431111 112222344444445555
Q ss_pred HHHHHHHhcCCC--CeeehHHHHHHHHHcCChHHHHHHHH
Q 010405 192 LAMQVFHSYGDK--DVSAYTSAIFGLAMNGHSIEAFELFE 229 (511)
Q Consensus 192 ~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~ 229 (511)
+|+..++....+ ....+......|...|+.++|...|+
T Consensus 103 ~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 103 EALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 555554443221 11223333444444444444444444
No 150
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.84 E-value=2.7e-05 Score=57.99 Aligned_cols=78 Identities=15% Similarity=0.133 Sum_probs=49.7
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHH
Q 010405 289 AGLLEEAENFIASM-PMKP---DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEV 364 (511)
Q Consensus 289 ~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 364 (511)
.|++++|+.+++++ ...| +...|..+..++.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45666777666665 1122 344555566777777777777777777 555555556666667777777777777777
Q ss_pred HHH
Q 010405 365 RKT 367 (511)
Q Consensus 365 ~~~ 367 (511)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
No 151
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.84 E-value=2.2e-05 Score=45.70 Aligned_cols=31 Identities=39% Similarity=0.665 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCC
Q 010405 105 VSWVVLISGFAQNGRPKEALALFREMQSLDL 135 (511)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 135 (511)
++||+|+++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677788888888888888888887777653
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.83 E-value=0.00028 Score=56.30 Aligned_cols=91 Identities=13% Similarity=-0.025 Sum_probs=42.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC---chhHHHHHHH
Q 010405 280 ACMVDLLGRAGLLEEAENFIASM-PMKPD----NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH---DGRYILLSNI 351 (511)
Q Consensus 280 ~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~ 351 (511)
..++..+.+.|++++|.+.|+.+ ...|+ ...+..+...+...|+++.|...++.+....|++ +.++..++.+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 33444444455555555555444 11121 1233334444555555555555555555544432 2344455555
Q ss_pred HHHcCCchHHHHHHHHHHh
Q 010405 352 YVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 352 ~~~~g~~~~A~~~~~~m~~ 370 (511)
+.+.|++++|.+.++++.+
T Consensus 86 ~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHhCChHHHHHHHHHHHH
Confidence 5555555555555555544
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.82 E-value=0.00037 Score=55.59 Aligned_cols=104 Identities=9% Similarity=-0.014 Sum_probs=68.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHchhhcCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHH
Q 010405 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP-ELDHYACMVDLLGRAGLLEEAENFIASM-PMKPD----NVIWGTLL 315 (511)
Q Consensus 242 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll 315 (511)
++..+...+...|++++|...|..+.+...-.+ ....+..+...+.+.|++++|.+.++.+ ...|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344555566677777777777777765221111 1345556777777888888888877765 22233 34566666
Q ss_pred HHHHhcCchhHHHHHHHHHhhcCCCCchhH
Q 010405 316 GACRVHRNAEMGQRIGNMLIESDQNHDGRY 345 (511)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 345 (511)
.++...|+.++|...++++.+..|+++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 777888888888888888888888765443
No 154
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.78 E-value=3.1e-05 Score=45.06 Aligned_cols=31 Identities=39% Similarity=0.650 Sum_probs=22.4
Q ss_pred eehHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 010405 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGI 236 (511)
Q Consensus 206 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 236 (511)
++||+++.+|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677777777777777777777777776653
No 155
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.73 E-value=0.00012 Score=52.12 Aligned_cols=64 Identities=22% Similarity=0.098 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcC-CchHHHHHHHHHHh
Q 010405 307 DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETL-KGENAEEVRKTMRK 370 (511)
Q Consensus 307 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 370 (511)
++.+|..+...+...|++++|+..|+++++.+|+++.+|..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46778888888999999999999999999999999999999999999999 79999999987765
No 156
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.65 E-value=0.0007 Score=58.23 Aligned_cols=82 Identities=11% Similarity=-0.042 Sum_probs=59.5
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHH
Q 010405 276 LDHYACMVDLLGRAGLLEEAENFIASM-PMKPD----NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSN 350 (511)
Q Consensus 276 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 350 (511)
...+..+...+...|++++|...|++. ...|+ ...+..+...+...|++++|...++++++..|.++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 345566666777777777777777665 22222 3466777777888888888888888888888888888888888
Q ss_pred HHHHcCC
Q 010405 351 IYVETLK 357 (511)
Q Consensus 351 ~~~~~g~ 357 (511)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8877766
No 157
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.65 E-value=0.00018 Score=50.45 Aligned_cols=58 Identities=12% Similarity=0.056 Sum_probs=47.7
Q ss_pred HHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010405 314 LLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 314 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 371 (511)
+...+...|++++|+..++++++..|+++..+..++.++...|++++|...+++..+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456778888899999999988888888888888888888999999998888887653
No 158
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.64 E-value=0.00037 Score=67.40 Aligned_cols=105 Identities=10% Similarity=-0.066 Sum_probs=85.8
Q ss_pred HHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCc
Q 010405 246 VLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRN 323 (511)
Q Consensus 246 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 323 (511)
-...+...|++++|+..|.++.+. -+.+...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 345567789999999999999872 2335778888899999999999999999887 5555 56678888888999999
Q ss_pred hhHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 010405 324 AEMGQRIGNMLIESDQNHDGRYILLSNIY 352 (511)
Q Consensus 324 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 352 (511)
+++|+..++++++++|+++.....+..+.
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 114 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECD 114 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999999887766655443
No 159
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.64 E-value=0.00088 Score=50.34 Aligned_cols=92 Identities=20% Similarity=0.152 Sum_probs=52.8
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 010405 107 WVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAK 186 (511)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 186 (511)
|..+...+...|++++|...|++..+.. +.+...+..+...+...++++.|.+.++...+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 4455556666666666666666665542 2233455555666666666666666666665543 2233455555566666
Q ss_pred cCCHHHHHHHHHhc
Q 010405 187 CGSIDLAMQVFHSY 200 (511)
Q Consensus 187 ~g~~~~A~~~~~~~ 200 (511)
.|++++|...|...
T Consensus 81 ~~~~~~a~~~~~~~ 94 (100)
T cd00189 81 LGKYEEALEAYEKA 94 (100)
T ss_pred HHhHHHHHHHHHHH
Confidence 66666666555543
No 160
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.61 E-value=0.057 Score=56.02 Aligned_cols=183 Identities=17% Similarity=0.153 Sum_probs=85.3
Q ss_pred HHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH--
Q 010405 115 AQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDL-- 192 (511)
Q Consensus 115 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~-- 192 (511)
.+.|+.++|..+++.....+.. |..|...+-.+|...++.++|..+|+.+.+. .|+......+..+|.+.+++.+
T Consensus 54 ~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQ 130 (932)
T KOG2053|consen 54 FRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQ 130 (932)
T ss_pred HHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555444433322 4455555555555555555555555555544 2334444444455555444332
Q ss_pred --HHHHHHhcCCCCeeehHHHHHHHHHcC-C---------hHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCCHHHH
Q 010405 193 --AMQVFHSYGDKDVSAYTSAIFGLAMNG-H---------SIEAFELFENMKSKG-ISPDSISYIAVLSACSHLGWVEKG 259 (511)
Q Consensus 193 --A~~~~~~~~~~~~~~~~~li~~~~~~g-~---------~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a 259 (511)
|.++++..++.--.-| ++++.+.+.- . ..-|.+.++.+.+.+ ..-+..-...-+......|..++|
T Consensus 131 kaa~~LyK~~pk~~yyfW-sV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~ea 209 (932)
T KOG2053|consen 131 KAALQLYKNFPKRAYYFW-SVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEA 209 (932)
T ss_pred HHHHHHHHhCCcccchHH-HHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHH
Confidence 3344443332222222 2222222211 1 123445555555443 111222222223345667778888
Q ss_pred HHHHH-HchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 010405 260 FYYFH-SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM 302 (511)
Q Consensus 260 ~~~~~-~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 302 (511)
..++. ...+ .-..-+...-+.-++.+...+++.+-.++-.++
T Consensus 210 l~~l~~~la~-~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 210 LEFLAITLAE-KLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHHH-hccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 88773 3322 222223334445667777778877766665544
No 161
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.58 E-value=0.11 Score=52.48 Aligned_cols=284 Identities=14% Similarity=0.075 Sum_probs=128.6
Q ss_pred CChHHHHHHHccCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC--C---hhHHHHHHHHHHHCCChhHHHHHHHHH
Q 010405 56 GEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKR--S---LVSWVVLISGFAQNGRPKEALALFREM 130 (511)
Q Consensus 56 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~---~~~~~~li~~~~~~g~~~~A~~~~~~m 130 (511)
|++++|.++|-+|.++|. .|.++.+.|++-...++++.-... | ..+|+.+...++....|++|.+.|..-
T Consensus 748 g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred cchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555555555555555543 344555555555555555442211 1 134555555555555555555544332
Q ss_pred HHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHH
Q 010405 131 QSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTS 210 (511)
Q Consensus 131 ~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~ 210 (511)
.. ....+.++.+..++++-+.+- ..++.+....-.+.+++...|.-++|.+.|-+-..|. +
T Consensus 823 ~~---------~e~~~ecly~le~f~~LE~la-----~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----a 883 (1189)
T KOG2041|consen 823 GD---------TENQIECLYRLELFGELEVLA-----RTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----A 883 (1189)
T ss_pred cc---------hHhHHHHHHHHHhhhhHHHHH-----HhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----H
Confidence 10 011222233322222222111 1234455566667777777777777777766655442 2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCC-----------CCHHHHHHHHHHHhccCCHHHHHHHHHHchhhc---CCCCCH
Q 010405 211 AIFGLAMNGHSIEAFELFENMKSKGIS-----------PDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH---GIKPEL 276 (511)
Q Consensus 211 li~~~~~~g~~~~A~~~~~~m~~~g~~-----------p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~~ 276 (511)
.+..|...++|.+|.++-++..-..+. .+..+. --|..+.+.|..-.|-+++.+|.+.. +.+|-.
T Consensus 884 Av~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~-eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr 962 (1189)
T KOG2041|consen 884 AVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHM-EAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLR 962 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchH-HHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHH
Confidence 344455555555555554432211000 011111 12344555555555555555554321 222211
Q ss_pred ----hHHHHH-HHHH----------HHcCCHHHHHHHHHhCC------C----CCCHHHHHHHHHH--HHhcCchhHHHH
Q 010405 277 ----DHYACM-VDLL----------GRAGLLEEAENFIASMP------M----KPDNVIWGTLLGA--CRVHRNAEMGQR 329 (511)
Q Consensus 277 ----~~~~~l-i~~~----------~~~g~~~~A~~~~~~~~------~----~p~~~~~~~ll~~--~~~~g~~~~a~~ 329 (511)
.+..+| +.-+ -+.|..++|..+++..- + -.-...|.-+|-+ -...|.++.|++
T Consensus 963 ~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~ 1042 (1189)
T KOG2041|consen 963 LKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQ 1042 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHH
Confidence 111111 1111 12356666666555431 0 0122334444433 456688888887
Q ss_pred HHHHHhh---cCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 010405 330 IGNMLIE---SDQNHDGRYILLSNIYVETLKGENAEEVR 365 (511)
Q Consensus 330 ~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 365 (511)
..-.+.. .-| ....|..|+-+-+....+...-+.|
T Consensus 1043 Tal~L~DYEd~lp-P~eiySllALaaca~raFGtCSKAf 1080 (1189)
T KOG2041|consen 1043 TALILSDYEDFLP-PAEIYSLLALAACAVRAFGTCSKAF 1080 (1189)
T ss_pred HHhhhccHhhcCC-HHHHHHHHHHHHhhhhhhhhhHHHH
Confidence 7666655 223 2356666655544444444444444
No 162
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.55 E-value=0.0015 Score=63.17 Aligned_cols=103 Identities=11% Similarity=0.071 Sum_probs=82.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCC-CHhHHHHHHHHHHHc
Q 010405 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP-ELDHYACMVDLLGRA 289 (511)
Q Consensus 211 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~ 289 (511)
....+...|++++|+.+|++.++... -+...|..+..++...|++++|+..++.+.+ +.| +...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHh
Confidence 34566788999999999999998643 2567788888899999999999999999987 344 577888999999999
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 010405 290 GLLEEAENFIASM-PMKPDNVIWGTLLGA 317 (511)
Q Consensus 290 g~~~~A~~~~~~~-~~~p~~~~~~~ll~~ 317 (511)
|++++|...|++. ...|+.......+..
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~ 112 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKE 112 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999887 556665544444433
No 163
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.53 E-value=0.082 Score=49.72 Aligned_cols=280 Identities=15% Similarity=0.153 Sum_probs=181.1
Q ss_pred HHHHHHHHHH--hcCCHHHHHHHHhhCC---CCChhHHHHHHH--HHHHCCChhHHHHHHHHHHHCCCCCCHhHHH----
Q 010405 75 SWNSILGGLV--RFGSVDDACRVFNQMP---KRSLVSWVVLIS--GFAQNGRPKEALALFREMQSLDLEPNSAILV---- 143 (511)
Q Consensus 75 ~~~~li~~~~--~~g~~~~A~~~~~~~~---~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~---- 143 (511)
-|.+|-.++. -.|+-..|.++-.+.. ..|....-.++. +-.-.|+++.|.+-|+.|.. |+.|-.
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLR 158 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLR 158 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHH
Confidence 4555555543 3577788887766543 234444434443 33456999999999999975 333332
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCee--ehHHHHHHHH
Q 010405 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD-----KDVS--AYTSAIFGLA 216 (511)
Q Consensus 144 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~--~~~~li~~~~ 216 (511)
.|.-...+.|+.+.|.++-+..-..- +.-...+.+.++..+..|+++.|+++.+.-.. +++. .--.|+.+-+
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA 237 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA 237 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence 33334457788888888887776653 22356778888999999999999999986443 4442 2223333322
Q ss_pred H---cCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCH
Q 010405 217 M---NGHSIEAFELFENMKSKGISPDSIS-YIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLL 292 (511)
Q Consensus 217 ~---~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 292 (511)
. ..+...|...-.+..+ +.||..- -..-..++.+.|++.++-.+++.+-+ -.|.+..+. +..+.+.|+.
T Consensus 238 ~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK---~ePHP~ia~--lY~~ar~gdt 310 (531)
T COG3898 238 MSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK---AEPHPDIAL--LYVRARSGDT 310 (531)
T ss_pred HHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh---cCCChHHHH--HHHHhcCCCc
Confidence 2 3355566666555544 5666432 23345678899999999999999977 344444432 2234455543
Q ss_pred HH--HHH--HHHhCCCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHc-CCchHHHHHHH
Q 010405 293 EE--AEN--FIASMPMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVET-LKGENAEEVRK 366 (511)
Q Consensus 293 ~~--A~~--~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~ 366 (511)
.. ..+ -++. .+| +..+--++..+-...|++..|..-.+.+....|.. ..|..|.++-... |+-.++...+.
T Consensus 311 a~dRlkRa~~L~s--lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlA 387 (531)
T COG3898 311 ALDRLKRAKKLES--LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLA 387 (531)
T ss_pred HHHHHHHHHHHHh--cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHH
Confidence 21 111 1233 344 45566677788889999999999999999999964 7888888887555 99999888887
Q ss_pred HHHh
Q 010405 367 TMRK 370 (511)
Q Consensus 367 ~m~~ 370 (511)
+..+
T Consensus 388 qav~ 391 (531)
T COG3898 388 QAVK 391 (531)
T ss_pred HHhc
Confidence 6654
No 164
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.53 E-value=0.0011 Score=56.73 Aligned_cols=94 Identities=14% Similarity=-0.099 Sum_probs=73.8
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHH
Q 010405 275 ELDHYACMVDLLGRAGLLEEAENFIASM-PMKPD----NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLS 349 (511)
Q Consensus 275 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 349 (511)
....|..++..+...|++++|...|++. ...|+ ..+|..+...+...|++++|+..++++..+.|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3556677777888889999999988876 23332 347888888899999999999999999999998888888888
Q ss_pred HHHH-------HcCCchHHHHHHHHH
Q 010405 350 NIYV-------ETLKGENAEEVRKTM 368 (511)
Q Consensus 350 ~~~~-------~~g~~~~A~~~~~~m 368 (511)
.+|. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 778888766666543
No 165
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.51 E-value=0.003 Score=50.02 Aligned_cols=107 Identities=21% Similarity=0.164 Sum_probs=66.9
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--ccHHHHHHHHHHH
Q 010405 109 VLISGFAQNGRPKEALALFREMQSLDLEPN--SAILVSLLSACAQLGALDYGNWVYSYIQKKCIK--LDSILCAALIDMY 184 (511)
Q Consensus 109 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~y 184 (511)
.+..++-..|+.++|+.+|++....|.... ...+..+.+.+...|++++|..+++........ .+......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 456677778888888888888888776554 345666777788888888888888877765211 0222223334455
Q ss_pred HhcCCHHHHHHHHHhcCCCCeeehHHHHHHH
Q 010405 185 AKCGSIDLAMQVFHSYGDKDVSAYTSAIFGL 215 (511)
Q Consensus 185 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 215 (511)
...|+.++|.+.+-....++...|.--|..|
T Consensus 86 ~~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777666544433333344333333
No 166
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.50 E-value=0.0034 Score=53.95 Aligned_cols=130 Identities=18% Similarity=0.116 Sum_probs=83.3
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 010405 103 SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPN--SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180 (511)
Q Consensus 103 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 180 (511)
....+..+...+...|++++|+..|++..+....+. ...+..+..++...|++++|...+.+..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 345677778888888888888888888876533322 3567778888888888888888888888763 3356666777
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 010405 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254 (511)
Q Consensus 181 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 254 (511)
..+|...|+...+..-++.. ...+++|++.+++.... .|+. +..++.-+...|
T Consensus 113 g~~~~~~g~~~~a~~~~~~A-----------------~~~~~~A~~~~~~a~~~--~p~~--~~~~~~~~~~~~ 165 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEA-----------------EALFDKAAEYWKQAIRL--APNN--YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHHcCChHhHhhCHHHH-----------------HHHHHHHHHHHHHHHhh--Cchh--HHHHHHHHHhcC
Confidence 77777777655544332221 11245677777766553 3332 444444444443
No 167
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.50 E-value=0.0043 Score=62.82 Aligned_cols=65 Identities=17% Similarity=0.101 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 307 DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 307 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
+...+.++.-.....|++++|...++++.+++| +...|..++.+|...|+.++|.+.+++....+
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 344555554445556777777777777777776 35667777777777777777777776665544
No 168
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.49 E-value=0.0034 Score=51.70 Aligned_cols=94 Identities=13% Similarity=0.082 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 010405 104 LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDM 183 (511)
Q Consensus 104 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 183 (511)
......+...+.+.|++++|..+|+-+...+ +-+..-|..|..++-..|++++|+..|..+.... +.|+..+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 3344445555556666666666666555432 2244445555555556666666666666665554 2345555555566
Q ss_pred HHhcCCHHHHHHHHHh
Q 010405 184 YAKCGSIDLAMQVFHS 199 (511)
Q Consensus 184 y~~~g~~~~A~~~~~~ 199 (511)
|.+.|+.+.|++.|+.
T Consensus 113 ~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 113 YLACDNVCYAIKALKA 128 (157)
T ss_pred HHHcCCHHHHHHHHHH
Confidence 6666666666665554
No 169
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.0041 Score=58.50 Aligned_cols=152 Identities=13% Similarity=0.005 Sum_probs=107.1
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHhccCCHHHHHHHHHHchhhcCCCCCHhHH------------
Q 010405 214 GLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS--ACSHLGWVEKGFYYFHSMFDVHGIKPELDHY------------ 279 (511)
Q Consensus 214 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~------------ 279 (511)
++...|+.++|...--..++.... + .+..+++ ++-..++.+.|...|++... ..|+-..-
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~~-n--~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDAT-N--AEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcccc-h--hHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHH
Confidence 456678888888776666553211 1 2222222 34456778888888887765 34442211
Q ss_pred -HHHHHHHHHcCCHHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 010405 280 -ACMVDLLGRAGLLEEAENFIASM-PMKP-----DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIY 352 (511)
Q Consensus 280 -~~li~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 352 (511)
..=..-..+.|++.+|.+.+.+. .+.| ++..|.....+..+.|+..+|+.-.+++.+++|.-...|..-++++
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH 331 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 11123456789999999999876 4444 4555666667788999999999999999999998888888889999
Q ss_pred HHcCCchHHHHHHHHHHhC
Q 010405 353 VETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 353 ~~~g~~~~A~~~~~~m~~~ 371 (511)
...++|++|.+-++...+.
T Consensus 332 l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999999999999877653
No 170
>PRK15331 chaperone protein SicA; Provisional
Probab=97.48 E-value=0.0013 Score=54.45 Aligned_cols=90 Identities=12% Similarity=0.078 Sum_probs=77.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCc
Q 010405 281 CMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKG 358 (511)
Q Consensus 281 ~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 358 (511)
....-+...|++++|..+|+-+ -..| +..-|..|..++...++++.|+..|..+..+.++||.++...+..|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 3444566789999999999887 2233 5667788888899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHh
Q 010405 359 ENAEEVRKTMRK 370 (511)
Q Consensus 359 ~~A~~~~~~m~~ 370 (511)
+.|...|+...+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999987765
No 171
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.44 E-value=0.00021 Score=50.58 Aligned_cols=52 Identities=13% Similarity=0.204 Sum_probs=44.0
Q ss_pred HhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 319 RVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
...|++++|++.++++....|+++.++..++.+|.+.|++++|.++++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4578889999999999999998888888999999999999999988877665
No 172
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.43 E-value=0.0054 Score=52.49 Aligned_cols=93 Identities=16% Similarity=0.111 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 010405 104 LVSWVVLISGFAQNGRPKEALALFREMQSLDLEP--NSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181 (511)
Q Consensus 104 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 181 (511)
...|..+...+...|++++|+..|++.......| ...++..+..++...|+.++|...++...+.. +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3567777777888888888888888876653222 23467777888888888888888888887653 33345566666
Q ss_pred HHHH-------hcCCHHHHHHHH
Q 010405 182 DMYA-------KCGSIDLAMQVF 197 (511)
Q Consensus 182 ~~y~-------~~g~~~~A~~~~ 197 (511)
..|. +.|+++.|...+
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~ 136 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWF 136 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHH
Confidence 6666 555555544433
No 173
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.0031 Score=57.23 Aligned_cols=102 Identities=10% Similarity=-0.057 Sum_probs=85.3
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH---hcCchhHHHHHHHHHhhcCCCCchhHHH
Q 010405 273 KPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACR---VHRNAEMGQRIGNMLIESDQNHDGRYIL 347 (511)
Q Consensus 273 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~---~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 347 (511)
+-|...|-.|...|.+.|+++.|..-|... .+.| ++..+..+..++. ......++..++++++..+|.+..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 456899999999999999999999999887 3443 5556666666642 3335678999999999999999999999
Q ss_pred HHHHHHHcCCchHHHHHHHHHHhCCCc
Q 010405 348 LSNIYVETLKGENAEEVRKTMRKRKIK 374 (511)
Q Consensus 348 l~~~~~~~g~~~~A~~~~~~m~~~g~~ 374 (511)
|+..+...|++.+|...|+.|.+....
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999986554
No 174
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.41 E-value=0.0034 Score=48.01 Aligned_cols=81 Identities=15% Similarity=0.116 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCC-CCCHhHHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCccHHH
Q 010405 106 SWVVLISGFAQNGRPKEALALFREMQSLDL-EPNSAILVSLLSACAQLG--------ALDYGNWVYSYIQKKCIKLDSIL 176 (511)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 176 (511)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-+...+++.|+..++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445567777778999999999999999999 899999999999877643 24456778999999999999999
Q ss_pred HHHHHHHHHh
Q 010405 177 CAALIDMYAK 186 (511)
Q Consensus 177 ~~~li~~y~~ 186 (511)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999987765
No 175
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.39 E-value=0.014 Score=54.60 Aligned_cols=24 Identities=8% Similarity=0.059 Sum_probs=14.5
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHH
Q 010405 107 WVVLISGFAQNGRPKEALALFREM 130 (511)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~~~~~m 130 (511)
|......|...|++++|.+.|.+.
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kA 61 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKA 61 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHH
Confidence 344556666677777777766655
No 176
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.38 E-value=0.00061 Score=61.40 Aligned_cols=98 Identities=14% Similarity=0.095 Sum_probs=81.7
Q ss_pred HHhccCCHHHHHHHHHHchhhcCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchh
Q 010405 249 ACSHLGWVEKGFYYFHSMFDVHGIKP-ELDHYACMVDLLGRAGLLEEAENFIASM-PMKPD-NVIWGTLLGACRVHRNAE 325 (511)
Q Consensus 249 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~ 325 (511)
-..+.+++.+|+..|...++ +.| |+.-|..-..+|.+.|.++.|.+-.+.. .+.|. ..+|..|-.+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 36678999999999999987 555 4666777889999999999999888776 66675 458999999999999999
Q ss_pred HHHHHHHHHhhcCCCCchhHHHHH
Q 010405 326 MGQRIGNMLIESDQNHDGRYILLS 349 (511)
Q Consensus 326 ~a~~~~~~~~~~~p~~~~~~~~l~ 349 (511)
+|++.|+++++++|++......|-
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHHH
Confidence 999999999999999874444443
No 177
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.38 E-value=0.0054 Score=57.21 Aligned_cols=132 Identities=11% Similarity=0.066 Sum_probs=93.8
Q ss_pred ehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHH
Q 010405 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA-CSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL 285 (511)
Q Consensus 207 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 285 (511)
+|..++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. ++.+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence 46666666677777778888888877542 2233344433333 33457777799999999884 45567788888899
Q ss_pred HHHcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC
Q 010405 286 LGRAGLLEEAENFIASM-PMKPDN----VIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH 341 (511)
Q Consensus 286 ~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 341 (511)
+.+.|+.+.|..+|++. ..-|.. ..|...+.--...|+.+...++.+++.+..|.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 99999999999999886 222333 489999999899999999999999999987764
No 178
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.37 E-value=0.004 Score=58.11 Aligned_cols=126 Identities=11% Similarity=0.052 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 010405 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA-CAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMY 184 (511)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 184 (511)
+|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. ++.+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 56667777777777777777777776432 2233344433333 23345666677777777765 455667777777777
Q ss_pred HhcCCHHHHHHHHHhcCCC--C----eeehHHHHHHHHHcCChHHHHHHHHHHHh
Q 010405 185 AKCGSIDLAMQVFHSYGDK--D----VSAYTSAIFGLAMNGHSIEAFELFENMKS 233 (511)
Q Consensus 185 ~~~g~~~~A~~~~~~~~~~--~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 233 (511)
.+.|+.+.|+.+|++.... . ...|...+..=.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777777776542 1 12455555555556666666666555554
No 179
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.37 E-value=0.0022 Score=57.91 Aligned_cols=99 Identities=22% Similarity=0.207 Sum_probs=81.5
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC-HhHHHHHHHHHHHcCC
Q 010405 213 FGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE-LDHYACMVDLLGRAGL 291 (511)
Q Consensus 213 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~ 291 (511)
.-+.+.+++.+|+..|.+.++.. +-|.+-|..-..+|++.|..+.|++-.+.... +.|. ...|..|..+|...|+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccCc
Confidence 44677899999999999999853 22567777788899999999999998888876 5565 7889999999999999
Q ss_pred HHHHHHHHHhC-CCCCCHHHHHHHH
Q 010405 292 LEEAENFIASM-PMKPDNVIWGTLL 315 (511)
Q Consensus 292 ~~~A~~~~~~~-~~~p~~~~~~~ll 315 (511)
+++|.+.|++. .+.|+-.+|..=+
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHH
Confidence 99999999887 7888777665433
No 180
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.37 E-value=0.00055 Score=50.85 Aligned_cols=80 Identities=18% Similarity=0.231 Sum_probs=39.5
Q ss_pred cCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCC-CHhHHHHHHHHHHHcCCHHHH
Q 010405 218 NGHSIEAFELFENMKSKGIS-PDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP-ELDHYACMVDLLGRAGLLEEA 295 (511)
Q Consensus 218 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A 295 (511)
.|+++.|+.+++++...... |+...+..+..++.+.|++++|..+++. .+ ..| +....-.+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 45666666666666554221 1233333355566666666666666655 21 112 122333345556666666666
Q ss_pred HHHHHh
Q 010405 296 ENFIAS 301 (511)
Q Consensus 296 ~~~~~~ 301 (511)
.+.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 665543
No 181
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.37 E-value=0.00084 Score=46.96 Aligned_cols=61 Identities=15% Similarity=0.102 Sum_probs=47.1
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCc
Q 010405 282 MVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD 342 (511)
Q Consensus 282 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 342 (511)
+...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456778888899999888887 4556 455777777888899999999999999998888764
No 182
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.36 E-value=0.0015 Score=61.23 Aligned_cols=128 Identities=9% Similarity=-0.039 Sum_probs=86.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHch---hhcCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCC-CCHH
Q 010405 242 SYIAVLSACSHLGWVEKGFYYFHSMF---DVHGIKP-ELDHYACMVDLLGRAGLLEEAENFIASM-------PMK-PDNV 309 (511)
Q Consensus 242 t~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~-p~~~ 309 (511)
.|..|...|.-.|+++.|+..++.-. +++|-.. ....+..|...+.-.|+++.|.+.++.. +.+ -...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45566666666788888887665432 2234332 2456777788888888888888877654 211 2445
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHhhc------CCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 010405 310 IWGTLLGACRVHRNAEMGQRIGNMLIES------DQNHDGRYILLSNIYVETLKGENAEEVRKTMR 369 (511)
Q Consensus 310 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 369 (511)
+..+|..+|....++++|+..+.+-+.+ ......++.+|+++|...|..++|....+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 6667788888888888888877765542 12235678889999999998888887765443
No 183
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.34 E-value=0.038 Score=46.38 Aligned_cols=133 Identities=8% Similarity=0.004 Sum_probs=103.1
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---CHHHH
Q 010405 236 ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP---DNVIW 311 (511)
Q Consensus 236 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~ 311 (511)
..|+...-..|..+....|+..+|...|.+... --+..|......+.++....+++.+|...++.. ...| ++.+-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 467777777788899999999999999999886 234556788888889999999999999999886 2112 22233
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 312 GTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 312 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
-.+...+...|.+..|+..|+.+..-.|+ +..-......+.++|+.++|..-+..+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 34567789999999999999999998774 45666677888999998888776655543
No 184
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.33 E-value=0.019 Score=53.75 Aligned_cols=170 Identities=13% Similarity=0.088 Sum_probs=97.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHc
Q 010405 144 SLLSACAQLGALDYGNWVYSYIQKK----CIKLD-SILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218 (511)
Q Consensus 144 ~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 218 (511)
.....|-..+++++|...|....+. +-+.+ ...|.....+|.+. ++++|...+++ .+..|...
T Consensus 40 ~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~-----------A~~~y~~~ 107 (282)
T PF14938_consen 40 KAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEK-----------AIEIYREA 107 (282)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHH-----------HHHHHHHC
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHH-----------HHHHHHhc
Confidence 3344566677777777777665432 11111 12233333334333 56666555443 34556666
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc-CCHHHHHHHHHHchhhcCCCCC----HhHHHHHHHHHHHcCCHH
Q 010405 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHL-GWVEKGFYYFHSMFDVHGIKPE----LDHYACMVDLLGRAGLLE 293 (511)
Q Consensus 219 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~ 293 (511)
|++..|-..+.+ +...|... |++++|.+.|.+..+.+..... ...+..+...+.+.|+++
T Consensus 108 G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~ 172 (282)
T PF14938_consen 108 GRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYE 172 (282)
T ss_dssp T-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HH
T ss_pred CcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHH
Confidence 666665555443 44566676 8899999988888763322222 345667788899999999
Q ss_pred HHHHHHHhCC---CC-----CCHH-HHHHHHHHHHhcCchhHHHHHHHHHhhcCCC
Q 010405 294 EAENFIASMP---MK-----PDNV-IWGTLLGACRVHRNAEMGQRIGNMLIESDQN 340 (511)
Q Consensus 294 ~A~~~~~~~~---~~-----p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 340 (511)
+|.++|++.. .. .+.. .+-..+-.+...||+..|.+.+++.....|.
T Consensus 173 ~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 173 EAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 9999998761 11 1121 1222233466778999999999999987774
No 185
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.30 E-value=0.011 Score=59.87 Aligned_cols=139 Identities=11% Similarity=-0.004 Sum_probs=101.1
Q ss_pred CCeeehHHHHHHHHHc--C---ChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhcc--------CCHHHHHHHHHHchh
Q 010405 203 KDVSAYTSAIFGLAMN--G---HSIEAFELFENMKSKGISPD-SISYIAVLSACSHL--------GWVEKGFYYFHSMFD 268 (511)
Q Consensus 203 ~~~~~~~~li~~~~~~--g---~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~--------g~~~~a~~~~~~~~~ 268 (511)
.|..+|...+.+.... + ....|..+|++..+. .|+ ...+..+..++... +++..+.+.......
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 4677898888885542 2 367999999999885 565 44555544444221 123344444444333
Q ss_pred hcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCch
Q 010405 269 VHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDG 343 (511)
Q Consensus 269 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 343 (511)
....+.++..|.++.-.....|++++|...++++ ...|+...|..+...+...|+.++|...++++..++|.++.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 1123445677888877777889999999999988 67788888999999999999999999999999999998874
No 186
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.29 E-value=0.00087 Score=48.16 Aligned_cols=57 Identities=11% Similarity=-0.004 Sum_probs=49.8
Q ss_pred HHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 316 GACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
..+...++++.|.+++++++..+|+++..+...+.+|.+.|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 457788999999999999999999999999999999999999999999998887644
No 187
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.27 E-value=0.2 Score=48.23 Aligned_cols=110 Identities=16% Similarity=0.163 Sum_probs=75.5
Q ss_pred HHHHHHHHHHchhhcCCCC-CHhHHHHHH----HHHHHc---C---CHHHHHHHHHhCCCCC----CHHHHHHHHHH--H
Q 010405 256 VEKGFYYFHSMFDVHGIKP-ELDHYACMV----DLLGRA---G---LLEEAENFIASMPMKP----DNVIWGTLLGA--C 318 (511)
Q Consensus 256 ~~~a~~~~~~~~~~~~~~p-~~~~~~~li----~~~~~~---g---~~~~A~~~~~~~~~~p----~~~~~~~ll~~--~ 318 (511)
-+.|..+++.+.+ +.| |...-|.+. ..|..+ . ++-+-+.++++.++.| +...-|.|..| +
T Consensus 396 dekalnLLk~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyL 472 (549)
T PF07079_consen 396 DEKALNLLKLILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYL 472 (549)
T ss_pred cHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHH
Confidence 5677777777766 333 222222221 122221 1 1223344555555554 44566777777 6
Q ss_pred HhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 010405 319 RVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMR 369 (511)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 369 (511)
..+|++.++.-.-..+.+..| ++.+|..++-......++++|..++..+.
T Consensus 473 ysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 473 YSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 789999999999999999999 78999999999999999999999997664
No 188
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.25 E-value=0.0034 Score=48.01 Aligned_cols=78 Identities=18% Similarity=0.240 Sum_probs=59.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccC--------CHHHHHHHHHHchhhcCCCCCHhHHH
Q 010405 210 SAIFGLAMNGHSIEAFELFENMKSKGI-SPDSISYIAVLSACSHLG--------WVEKGFYYFHSMFDVHGIKPELDHYA 280 (511)
Q Consensus 210 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~~~~ 280 (511)
..|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. ++-+.+.+|+.|.. .+++|+..+|+
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~-~~lKP~~etYn 108 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILS-NKLKPNDETYN 108 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH-hccCCcHHHHH
Confidence 345556666888888899999999998 889999999988776542 24456777888876 67888888888
Q ss_pred HHHHHHHH
Q 010405 281 CMVDLLGR 288 (511)
Q Consensus 281 ~li~~~~~ 288 (511)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88877654
No 189
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.21 E-value=0.21 Score=47.34 Aligned_cols=111 Identities=13% Similarity=0.109 Sum_probs=85.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010405 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRV 320 (511)
Q Consensus 241 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~ 320 (511)
.+.+..+.-|...|....|.++-... .+ |+..-|-..+.+|+..++|++-.++... +..+.-|..++.+|..
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 45555666777788888887765544 34 7888899999999999999998887654 3356778899999999
Q ss_pred cCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 010405 321 HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTM 368 (511)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 368 (511)
.|+..+|..+..++ .+..-+.+|.++|+|.+|.+.--+.
T Consensus 250 ~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 250 YGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 99999999888771 2245678889999999998765443
No 190
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.20 E-value=0.0026 Score=54.95 Aligned_cols=96 Identities=19% Similarity=0.299 Sum_probs=73.0
Q ss_pred HHHHhc--CCCCeeehHHHHHHHHH-----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc--------------
Q 010405 195 QVFHSY--GDKDVSAYTSAIFGLAM-----NGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL-------------- 253 (511)
Q Consensus 195 ~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-------------- 253 (511)
..|+.. ..+|-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.||+.+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344444 34566666666666654 467777788888999999999999999999887542
Q ss_pred --CCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCC
Q 010405 254 --GWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGL 291 (511)
Q Consensus 254 --g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 291 (511)
.+.+-|++++++|.. +|+-||.+++..|++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 234678899999987 8999999999999999887764
No 191
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=0.054 Score=48.10 Aligned_cols=193 Identities=11% Similarity=0.043 Sum_probs=109.9
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHc---cCCCCCh---------------------------------hHHHHHHHHHHh
Q 010405 42 VVSWNSMINGYVRNGEILEGLKLFD---KMPQRND---------------------------------VSWNSILGGLVR 85 (511)
Q Consensus 42 ~~~~~~li~~~~~~g~~~~A~~~~~---~m~~~~~---------------------------------~~~~~li~~~~~ 85 (511)
...|+.-+.++++....++|..-++ ....||. .-+++|++.|.-
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L 148 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKL 148 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 3457777888888888887765444 3333321 123444444444
Q ss_pred cCCHHHHHHHHhhCCCC--Ch--------hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCH
Q 010405 86 FGSVDDACRVFNQMPKR--SL--------VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGAL 155 (511)
Q Consensus 86 ~g~~~~A~~~~~~~~~~--~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 155 (511)
..-+.+-...|+.-..+ .+ ..-+.++..+.-.|.+.-.+.++.+..+...+.++.....|++.-.+.|+.
T Consensus 149 ~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~ 228 (366)
T KOG2796|consen 149 KTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDI 228 (366)
T ss_pred HHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccH
Confidence 43344444444332221 11 123455555556667777777777777665555666667777777777777
Q ss_pred HHHHHHHHHHHHcC-----CCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHH
Q 010405 156 DYGNWVYSYIQKKC-----IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFEL 227 (511)
Q Consensus 156 ~~a~~~~~~~~~~~-----~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 227 (511)
+.|...|+...+.. +.....+.......|.-.+++..|...|.++.. .|++.-|.-.-+..-.|+..+|++.
T Consensus 229 k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~ 308 (366)
T KOG2796|consen 229 KTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQ 308 (366)
T ss_pred HHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHH
Confidence 77777777665532 222233333334445556666677777766654 3444555544455556777777777
Q ss_pred HHHHHhC
Q 010405 228 FENMKSK 234 (511)
Q Consensus 228 ~~~m~~~ 234 (511)
.+.|+..
T Consensus 309 ~e~~~~~ 315 (366)
T KOG2796|consen 309 LEAMVQQ 315 (366)
T ss_pred HHHHhcc
Confidence 7777664
No 192
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.18 E-value=0.0063 Score=59.24 Aligned_cols=96 Identities=16% Similarity=0.097 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHC--CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 010405 106 SWVVLISGFAQNGRPKEALALFREMQSL--DLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDM 183 (511)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 183 (511)
....+++......+.+.+..++.+.... ....-..|..++++.|...|..+.+..++..=...|+-||..++|.||+.
T Consensus 68 dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~ 147 (429)
T PF10037_consen 68 DLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDH 147 (429)
T ss_pred HHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHH
Confidence 3444444444444555555555554433 11112233345555555555555555555555555555555555555555
Q ss_pred HHhcCCHHHHHHHHHhcC
Q 010405 184 YAKCGSIDLAMQVFHSYG 201 (511)
Q Consensus 184 y~~~g~~~~A~~~~~~~~ 201 (511)
+.+.|++..|.++...|.
T Consensus 148 fl~~~~~~~A~~V~~~~~ 165 (429)
T PF10037_consen 148 FLKKGNYKSAAKVATEMM 165 (429)
T ss_pred HhhcccHHHHHHHHHHHH
Confidence 555555555555554443
No 193
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.18 E-value=0.074 Score=53.14 Aligned_cols=125 Identities=14% Similarity=0.114 Sum_probs=67.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHH
Q 010405 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259 (511)
Q Consensus 180 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 259 (511)
-.+++...|+.++|..+. ..+|=.+-++++-+++-. .+..+...+..-+.+...+..|
T Consensus 709 AAEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLA 766 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLA 766 (1081)
T ss_pred HHHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchH
Confidence 344555667777765542 233334444444443322 1334444444445556666777
Q ss_pred HHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCHHH-HHH----------HHHHHHhcCchhHH
Q 010405 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP-MKPDNVI-WGT----------LLGACRVHRNAEMG 327 (511)
Q Consensus 260 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~-~~~----------ll~~~~~~g~~~~a 327 (511)
-++|.+|-. ...++++....++|++|..+-++.| ..||+.. |.. --.+|.+.|+-.+|
T Consensus 767 aeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA 836 (1081)
T KOG1538|consen 767 AEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREA 836 (1081)
T ss_pred HHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHH
Confidence 777777654 2346666777778888887777774 3344321 111 11334555556666
Q ss_pred HHHHHHHhh
Q 010405 328 QRIGNMLIE 336 (511)
Q Consensus 328 ~~~~~~~~~ 336 (511)
.++++++..
T Consensus 837 ~~vLeQLtn 845 (1081)
T KOG1538|consen 837 VQVLEQLTN 845 (1081)
T ss_pred HHHHHHhhh
Confidence 666666554
No 194
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.36 Score=49.38 Aligned_cols=318 Identities=14% Similarity=0.105 Sum_probs=171.3
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCC---hhHHHHHHHHHHHcCC---hHHHHHHHccCCC--CChhHHHHHHHHHHhcCC
Q 010405 17 LIQFYSVCGRVRDARWVFDESDDLD---VVSWNSMINGYVRNGE---ILEGLKLFDKMPQ--RNDVSWNSILGGLVRFGS 88 (511)
Q Consensus 17 li~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~---~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~ 88 (511)
+++-+...+.+..|+++-..+..|- ...|..-..-+.+..+ -+-+..+=+++.. .+-.+|..+..-.-.+|+
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR 522 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGR 522 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCc
Confidence 4555666667777777766665443 2233333333333322 1222222223332 344566666666666777
Q ss_pred HHHHHHHHhhCCCC--------ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 010405 89 VDDACRVFNQMPKR--------SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNW 160 (511)
Q Consensus 89 ~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 160 (511)
.+-|..+++.=+.. +..-+..-+.-..+.|+.+....++..+.+. .+...|... ..+.-.|..
T Consensus 523 ~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~------l~~~p~a~~ 593 (829)
T KOG2280|consen 523 FELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMT------LRNQPLALS 593 (829)
T ss_pred HHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHH------HHhchhhhH
Confidence 77777776653321 1122334444455555555555555544432 111111111 112233444
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCCeeehHHHHHHHHHcCC---hHHH------
Q 010405 161 VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG-------DKDVSAYTSAIFGLAMNGH---SIEA------ 224 (511)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~---~~~A------ 224 (511)
+|.+..+.. |. ..|-+.|-. ++..++...|..=. +.-..........+++... .++|
T Consensus 594 lY~~~~r~~---~~---~~l~d~y~q-~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~k 666 (829)
T KOG2280|consen 594 LYRQFMRHQ---DR---ATLYDFYNQ-DDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMK 666 (829)
T ss_pred HHHHHHHhh---ch---hhhhhhhhc-ccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 444443321 10 112233333 33333333322111 1111122223334444332 1122
Q ss_pred -HHHHHHHHh-CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 010405 225 -FELFENMKS-KGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM 302 (511)
Q Consensus 225 -~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 302 (511)
+.+.+.+.. .|......|.+--+.-+...|+..+|.++-.+.+ .||-..|-.-+.+++..+++++-+++-+..
T Consensus 667 Ll~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAksk 741 (829)
T KOG2280|consen 667 LLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSK 741 (829)
T ss_pred HHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhcc
Confidence 222333322 2333445566666777888899999988876664 388888888899999999999988888876
Q ss_pred CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHH
Q 010405 303 PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRK 366 (511)
Q Consensus 303 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 366 (511)
. .+.-|.-+..+|.+.|+.++|.+.+-+..... -...+|.+.|++.+|.++--
T Consensus 742 k---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~--------ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 742 K---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ--------EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred C---CCCCchhHHHHHHhcccHHHHhhhhhccCChH--------HHHHHHHHhccHHHHHHHHH
Confidence 4 25567778899999999999999876643321 57888999999999987653
No 195
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.16 E-value=0.0062 Score=59.29 Aligned_cols=117 Identities=15% Similarity=0.080 Sum_probs=61.6
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCeeeh
Q 010405 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKK--CIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD----KDVSAY 208 (511)
Q Consensus 135 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~ 208 (511)
.+.+......+++.+....+++.+..++-..... ....-..+..++|..|.+.|..++++.+++.=.. ||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3445555556666666666666666655555543 1112223334556666666666655555554332 455555
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 010405 209 TSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS 251 (511)
Q Consensus 209 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 251 (511)
|.++..+.+.|++..|.++..+|...+.-.+..|+..-+.+|.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 5555555555555555555555555444444455444444443
No 196
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.16 E-value=0.094 Score=44.13 Aligned_cols=100 Identities=18% Similarity=0.090 Sum_probs=61.1
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCeeehH
Q 010405 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD-----KDVSAYT 209 (511)
Q Consensus 135 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~ 209 (511)
+.|+...-..|..+....|+..+|...|++...--+..|....-.+.++....++...|...++.+.+ +...+.-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 35666666666677777777777777777766655555666666666666666666666666665543 1223344
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhC
Q 010405 210 SAIFGLAMNGHSIEAFELFENMKSK 234 (511)
Q Consensus 210 ~li~~~~~~g~~~~A~~~~~~m~~~ 234 (511)
.+...|...|.+.+|..-|+.....
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh
Confidence 4455555566666666666655553
No 197
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.11 E-value=0.058 Score=49.05 Aligned_cols=56 Identities=11% Similarity=0.054 Sum_probs=44.6
Q ss_pred HHHHHHhcCchhHHHHHHHHHhhcCCCC---chhHHHHHHHHHHcCCchHHHHHHHHHH
Q 010405 314 LLGACRVHRNAEMGQRIGNMLIESDQNH---DGRYILLSNIYVETLKGENAEEVRKTMR 369 (511)
Q Consensus 314 ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 369 (511)
+..-|.+.|.+..|..-++.+++.-|+. +.+...+..+|.+.|..++|..+.+.+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 3345788899999999999999976654 3566688899999999999998877654
No 198
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.06 E-value=0.21 Score=45.40 Aligned_cols=65 Identities=12% Similarity=0.037 Sum_probs=39.4
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH-hHH---HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010405 103 SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS-AIL---VSLLSACAQLGALDYGNWVYSYIQKKC 169 (511)
Q Consensus 103 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~---~~ll~~~~~~~~~~~a~~~~~~~~~~~ 169 (511)
+...+-.....+.+.|++++|.+.|+++...- |+. .+. ..+..++.+.+++++|...+++.++..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 34444445555666777777777777776642 222 111 344556667777777777777776653
No 199
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.05 E-value=0.038 Score=52.77 Aligned_cols=159 Identities=17% Similarity=0.143 Sum_probs=91.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---Ceee----hHHHHHHHHH---cCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010405 179 ALIDMYAKCGSIDLAMQVFHSYGDK---DVSA----YTSAIFGLAM---NGHSIEAFELFENMKSKGISPDSISYIAVLS 248 (511)
Q Consensus 179 ~li~~y~~~g~~~~A~~~~~~~~~~---~~~~----~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 248 (511)
.|+-.|....+++..+++++.+... +... --...-++.+ .|+.++|++++..+....-.++..||..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4555688888888888888888763 2111 1123334555 7888999999988766666778888877776
Q ss_pred HHhc---------cCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHH----HHHH---Hh-C---C---CC
Q 010405 249 ACSH---------LGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA----ENFI---AS-M---P---MK 305 (511)
Q Consensus 249 ~~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A----~~~~---~~-~---~---~~ 305 (511)
.|-. ....++|+..|.+.-+ +.|+..+--.++..+...|...+. .++- .. . + ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 6532 2235667766665533 445544433333334444432111 1111 11 0 1 11
Q ss_pred CCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCC
Q 010405 306 PDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQN 340 (511)
Q Consensus 306 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 340 (511)
.|-..+.+++.++.-.|+.++|.+.++++..+.|+
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 23444556666666666677777776666666553
No 200
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.02 E-value=0.0012 Score=46.72 Aligned_cols=60 Identities=13% Similarity=0.203 Sum_probs=31.8
Q ss_pred ccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 010405 252 HLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKPDNVIWGT 313 (511)
Q Consensus 252 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 313 (511)
..|++++|.++|+.+.+. .+-+...+..++.+|.+.|++++|.++++++ ...|+...|..
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 63 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQ 63 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHH
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 345666666666666541 2224555555666666666666666666665 33455444433
No 201
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.01 E-value=0.0023 Score=45.34 Aligned_cols=65 Identities=14% Similarity=0.075 Sum_probs=49.0
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-chhHHHHHHHHHhhcCC
Q 010405 275 ELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHR-NAEMGQRIGNMLIESDQ 339 (511)
Q Consensus 275 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 339 (511)
++..|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3556777778888888888888888776 4445 4557777777788888 68888888888888776
No 202
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.00 E-value=0.00055 Score=40.56 Aligned_cols=33 Identities=27% Similarity=0.259 Sum_probs=30.6
Q ss_pred HHHHhhcCCCCchhHHHHHHHHHHcCCchHHHH
Q 010405 331 GNMLIESDQNHDGRYILLSNIYVETLKGENAEE 363 (511)
Q Consensus 331 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 363 (511)
++++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678899999999999999999999999999863
No 203
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.98 E-value=0.0085 Score=51.83 Aligned_cols=97 Identities=11% Similarity=0.207 Sum_probs=68.2
Q ss_pred HHHHhhC--CCCChhHHHHHHHHHHHC-----CChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc-------------
Q 010405 93 CRVFNQM--PKRSLVSWVVLISGFAQN-----GRPKEALALFREMQSLDLEPNSAILVSLLSACAQL------------- 152 (511)
Q Consensus 93 ~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~------------- 152 (511)
...|++. ..++-.+|..++..|.+. |..+=....+..|.+-|+.-|..+|+.|++.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3455554 345666777777776643 55555666677777777777777887777765321
Q ss_pred ---CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 010405 153 ---GALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS 189 (511)
Q Consensus 153 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 189 (511)
.+-+-|++++++|...|+-||..++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2346688899999999999999999999988876553
No 204
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.97 E-value=0.014 Score=46.34 Aligned_cols=83 Identities=12% Similarity=-0.053 Sum_probs=42.2
Q ss_pred HHHHHcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCC---CchhHHHHHHHHHHc
Q 010405 284 DLLGRAGLLEEAENFIASM---PMKPD--NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQN---HDGRYILLSNIYVET 355 (511)
Q Consensus 284 ~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~ 355 (511)
.++-..|+.++|..+|++. +.... ...+-.+.+.+...|++++|+.++++.....|+ +......+..++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 3444455555555555543 21111 123333445556666666666666666655554 333444445555666
Q ss_pred CCchHHHHHHH
Q 010405 356 LKGENAEEVRK 366 (511)
Q Consensus 356 g~~~~A~~~~~ 366 (511)
|+.++|.+.+-
T Consensus 89 gr~~eAl~~~l 99 (120)
T PF12688_consen 89 GRPKEALEWLL 99 (120)
T ss_pred CCHHHHHHHHH
Confidence 66666665543
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.90 E-value=0.0083 Score=55.04 Aligned_cols=93 Identities=11% Similarity=0.020 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC---chhHHHHH
Q 010405 278 HYACMVDLLGRAGLLEEAENFIASM-PMKPDN----VIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH---DGRYILLS 349 (511)
Q Consensus 278 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 349 (511)
.|...+..+.+.|++++|...|+.+ ...|+. ..+.-+...+...|++++|...|+.+.+..|++ +.++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3555555555567777777766665 222322 244445566777777777777777777765553 34455556
Q ss_pred HHHHHcCCchHHHHHHHHHHh
Q 010405 350 NIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~m~~ 370 (511)
.+|...|++++|.++++...+
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 667777777777777776654
No 206
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.84 E-value=0.45 Score=44.99 Aligned_cols=249 Identities=14% Similarity=0.090 Sum_probs=145.0
Q ss_pred HHHHHHHHHHH--CCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCccHH--HHHH
Q 010405 106 SWVVLISGFAQ--NGRPKEALALFREMQSLDLEPNSAILVSLLSACA--QLGALDYGNWVYSYIQKKCIKLDSI--LCAA 179 (511)
Q Consensus 106 ~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ 179 (511)
-|.+|-.++.. .|+-..|.++-.+-.+. +..|......|+.+-. -.|+.+.|.+-|+.|... |... -...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 35555555544 46666666665544322 3445556666665543 458888888888888753 2222 2233
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC--CC-eeehHHHHHHHHHcCChHHHHHHHHHHHhCC-CCCCHH--HHHHHHHHHhc-
Q 010405 180 LIDMYAKCGSIDLAMQVFHSYGD--KD-VSAYTSAIFGLAMNGHSIEAFELFENMKSKG-ISPDSI--SYIAVLSACSH- 252 (511)
Q Consensus 180 li~~y~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~~~~~- 252 (511)
|.-.-.+.|..+-|+++-++.-. |. .-.+.+.+...+..|+++.|+++++.-+... +.++.. .-..|+.+-..
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 33344567888888877776654 22 2356777888888888888888887765432 444432 22223332211
Q ss_pred --cCCHHHHHHHHHHchhhcCCCCCHhH-HHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCchhHH-
Q 010405 253 --LGWVEKGFYYFHSMFDVHGIKPELDH-YACMVDLLGRAGLLEEAENFIASM-PMKPDNVIWGTLLGACRVHRNAEMG- 327 (511)
Q Consensus 253 --~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a- 327 (511)
..+...|...-.+..+ +.|+..- --.-..+|.+.|++.++-.+++.+ ...|.+.+|..... .+.|+....
T Consensus 240 ~ldadp~~Ar~~A~~a~K---L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~--ar~gdta~dR 314 (531)
T COG3898 240 LLDADPASARDDALEANK---LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVR--ARSGDTALDR 314 (531)
T ss_pred HhcCChHHHHHHHHHHhh---cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHH--hcCCCcHHHH
Confidence 2345555555544433 5566332 223456778888888888888887 66677766643332 334432221
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHH
Q 010405 328 QRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEE 363 (511)
Q Consensus 328 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 363 (511)
.+-.+++..+.|++......+..+-...|++..|..
T Consensus 315 lkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa 350 (531)
T COG3898 315 LKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARA 350 (531)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHH
Confidence 223334444778887777777777777777765543
No 207
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.61 Score=44.48 Aligned_cols=150 Identities=14% Similarity=-0.021 Sum_probs=81.7
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCee---------------ehHHHHH
Q 010405 149 CAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS---------------AYTSAIF 213 (511)
Q Consensus 149 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~---------------~~~~li~ 213 (511)
+...|+.++|.++--.+++.. +.+....-.-..++.-.++.+.|...|++...-|.. .|..-..
T Consensus 179 l~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN 257 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGN 257 (486)
T ss_pred hhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhh
Confidence 455566666666655555442 111111111112223345666666666665542221 1222233
Q ss_pred HHHHcCChHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC-HhHHHHHHHHHHHc
Q 010405 214 GLAMNGHSIEAFELFENMKSK---GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE-LDHYACMVDLLGRA 289 (511)
Q Consensus 214 ~~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~ 289 (511)
-..++|.+.+|.+.|.+.+.. .++|+...|.....+..+.|+.++|+.--+...+ +.|. ...|..-..++.-.
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHLAL 334 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHHH
Confidence 455677888888888777653 2445556666666667777888888777666654 3332 22333333445556
Q ss_pred CCHHHHHHHHHhC
Q 010405 290 GLLEEAENFIASM 302 (511)
Q Consensus 290 g~~~~A~~~~~~~ 302 (511)
++|++|.+-++..
T Consensus 335 e~~e~AV~d~~~a 347 (486)
T KOG0550|consen 335 EKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHH
Confidence 6777777777664
No 208
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.68 E-value=0.32 Score=49.28 Aligned_cols=252 Identities=12% Similarity=0.084 Sum_probs=143.2
Q ss_pred CHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHC-CCCCCH--hHHH--HH--HHHHHhcCCHHHHHH
Q 010405 88 SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL-DLEPNS--AILV--SL--LSACAQLGALDYGNW 160 (511)
Q Consensus 88 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~--~t~~--~l--l~~~~~~~~~~~a~~ 160 (511)
.+++|.+..+.- |.+..|..+...-.+.-.++-|...|-+...- |++.-. .|.. .+ ...-+--|.+++|++
T Consensus 678 gledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek 755 (1189)
T KOG2041|consen 678 GLEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEK 755 (1189)
T ss_pred chHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhh
Confidence 456666665543 44567777777666666667776666554321 221100 0000 00 112233477888888
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC--C---eeehHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 010405 161 VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK--D---VSAYTSAIFGLAMNGHSIEAFELFENMKSKG 235 (511)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 235 (511)
++-.+-++. .-+.++.+.|++-...++++.-... | ..+|+.+...++....|++|.+.|..-..
T Consensus 756 ~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-- 824 (1189)
T KOG2041|consen 756 LYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-- 824 (1189)
T ss_pred hhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence 877665543 2467778888888888887764432 1 24688888888888888888888765321
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 010405 236 ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLL 315 (511)
Q Consensus 236 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll 315 (511)
. ...+.++.+..++++-..+-..+ +.+....-.+.+++.+.|.-++|.+.+-+-+. | .+-+
T Consensus 825 ----~---e~~~ecly~le~f~~LE~la~~L------pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~-p-----kaAv 885 (1189)
T KOG2041|consen 825 ----T---ENQIECLYRLELFGELEVLARTL------PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL-P-----KAAV 885 (1189)
T ss_pred ----h---HhHHHHHHHHHhhhhHHHHHHhc------CcccchHHHHHHHHHhhchHHHHHHHHHhccC-c-----HHHH
Confidence 1 12445555555555544443333 33455566677888888888888777665532 2 1234
Q ss_pred HHHHhcCchhHHHHHHHHHhhcCCCC-----------chhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010405 316 GACRVHRNAEMGQRIGNMLIESDQNH-----------DGRYILLSNIYVETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 371 (511)
..|...+++.+|.++.++..--.... ..-..--+..+-++|+.-+|.+++.+|.++
T Consensus 886 ~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~ 952 (1189)
T KOG2041|consen 886 HTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAER 952 (1189)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHH
Confidence 45555566666655554422100000 011122355677777877788887777653
No 209
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.66 E-value=0.32 Score=42.94 Aligned_cols=62 Identities=18% Similarity=0.074 Sum_probs=34.2
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCCCC--CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010405 107 WVVLISGFAQNGRPKEALALFREMQSLDLE--PNSAILVSLLSACAQLGALDYGNWVYSYIQKK 168 (511)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 168 (511)
.-.....+.+.|++.+|.+.|+.+...-.. --......++.++.+.|+++.|...++..++.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334455566667777777777766654211 11234445566666667777777776666654
No 210
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.63 E-value=0.0035 Score=39.75 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHH
Q 010405 309 VIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSN 350 (511)
Q Consensus 309 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 350 (511)
.+|..+..++...|++++|+++++++++..|+++..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357778889999999999999999999999999888877653
No 211
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.63 E-value=0.14 Score=45.64 Aligned_cols=132 Identities=10% Similarity=0.015 Sum_probs=63.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcC----CCCCHhHHHHHHH
Q 010405 209 TSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG----IKPELDHYACMVD 284 (511)
Q Consensus 209 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~p~~~~~~~li~ 284 (511)
+.++..+.-.|.+.-.+.++.+.++...+.++.....|.+.-.+.|+.+.|..+|+...+..+ +.-...+......
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 344444444555656666666666654444555555566666666666666666665544221 1111122222223
Q ss_pred HHHHcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCC
Q 010405 285 LLGRAGLLEEAENFIASMPMK-P-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQN 340 (511)
Q Consensus 285 ~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 340 (511)
.|.-++++.+|...+.+.+.. | |+...|.-.-...-.|+...|++..+.+.+..|.
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 344445555555555554211 1 2222222222222335555555555555555554
No 212
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.62 E-value=0.0096 Score=57.57 Aligned_cols=62 Identities=6% Similarity=0.009 Sum_probs=39.2
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCchhHHHHHHHHHhhc
Q 010405 276 LDHYACMVDLLGRAGLLEEAENFIASM-PMKPDN----VIWGTLLGACRVHRNAEMGQRIGNMLIES 337 (511)
Q Consensus 276 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 337 (511)
...++.+..+|.+.|++++|+..|++. .+.|+. .+|..+..+|...|+.++|+..++++++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555666666666666666666666663 445543 24666666666666666666666666665
No 213
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.60 E-value=0.0084 Score=42.93 Aligned_cols=62 Identities=13% Similarity=0.058 Sum_probs=47.3
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhH
Q 010405 284 DLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRY 345 (511)
Q Consensus 284 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 345 (511)
..|.+.+++++|.+.++.+ ...| +...|......+...|++++|...++++.+..|+++...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 5677888888888888877 4445 445666677778888889999999988888888765443
No 214
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.46 E-value=1.3 Score=45.53 Aligned_cols=301 Identities=13% Similarity=0.066 Sum_probs=176.1
Q ss_pred HHHHHHHHHcCChHHHHHHHccCCCCC---hhHHHHHHHHHHhcC---CHHHHHHHHhhCCC--CChhHHHHHHHHHHHC
Q 010405 46 NSMINGYVRNGEILEGLKLFDKMPQRN---DVSWNSILGGLVRFG---SVDDACRVFNQMPK--RSLVSWVVLISGFAQN 117 (511)
Q Consensus 46 ~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g---~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~ 117 (511)
..+|+-+...+.+..|+++-..+..|. ..+|.....-+.+.. +-+-+..+=+++.. ..-++|....+.-.+.
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQE 520 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhc
Confidence 445667777888889999888887765 566777777776653 23344455555555 3556788888888899
Q ss_pred CChhHHHHHHHHHHHCCCC----CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 010405 118 GRPKEALALFREMQSLDLE----PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLA 193 (511)
Q Consensus 118 g~~~~A~~~~~~m~~~~~~----p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 193 (511)
|+++.|..+++.=...+-. .+-.-+...+.-+...|+.+...+++-.+.+.- +...+ .....+...|
T Consensus 521 GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l------~~~l~~~p~a 591 (829)
T KOG2280|consen 521 GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSL------FMTLRNQPLA 591 (829)
T ss_pred CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHH------HHHHHhchhh
Confidence 9999998877542221100 011123334445555666666655555544321 11111 1112233444
Q ss_pred HHHHHhcCC-CCeeehHHHHHHHHHcCChHHHHHHHH--HHH----hCCCCCCHHHHHHHHHHHhccCC----------H
Q 010405 194 MQVFHSYGD-KDVSAYTSAIFGLAMNGHSIEAFELFE--NMK----SKGISPDSISYIAVLSACSHLGW----------V 256 (511)
Q Consensus 194 ~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~--~m~----~~g~~p~~~t~~~ll~~~~~~g~----------~ 256 (511)
..+|....+ .|..+ +..+.+.++..+++..|. .-. ..|..|+. .....+|++... .
T Consensus 592 ~~lY~~~~r~~~~~~----l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ka~ed~ 664 (829)
T KOG2280|consen 592 LSLYRQFMRHQDRAT----LYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEAKALEDQ 664 (829)
T ss_pred hHHHHHHHHhhchhh----hhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHHHHHHHH
Confidence 555544332 12111 111222232223332221 100 11233333 333444554433 2
Q ss_pred HHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhh
Q 010405 257 EKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIE 336 (511)
Q Consensus 257 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (511)
..-+++.+.+...+|..-.--+.+--+.-+...|+..+|.++-.+..+ ||-..|.--+.++...+++++-+++.+....
T Consensus 665 ~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki-pdKr~~wLk~~aLa~~~kweeLekfAkskks 743 (829)
T KOG2280|consen 665 MKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI-PDKRLWWLKLTALADIKKWEELEKFAKSKKS 743 (829)
T ss_pred HHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC-cchhhHHHHHHHHHhhhhHHHHHHHHhccCC
Confidence 223344555555555544444556666777889999999999999875 7999998889999999999988877665432
Q ss_pred cCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 010405 337 SDQNHDGRYILLSNIYVETLKGENAEEVRKTM 368 (511)
Q Consensus 337 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 368 (511)
|.-|.-...+|.++|+.++|.+++-+.
T Consensus 744 -----PIGy~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 744 -----PIGYLPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred -----CCCchhHHHHHHhcccHHHHhhhhhcc
Confidence 467777888999999999999988544
No 215
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.44 E-value=0.05 Score=49.98 Aligned_cols=102 Identities=12% Similarity=0.096 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCC-CHHHHHHH
Q 010405 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP-ELDHYACMVDLLGRAGLLEEAENFIASM----PMKP-DNVIWGTL 314 (511)
Q Consensus 241 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l 314 (511)
..|...+......|++++|...|+.+.+.+.-.+ ....+-.+...|...|++++|...|+.+ |..| ....+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3455555444667889999999988887432211 1346677888899999999999988887 2222 23345555
Q ss_pred HHHHHhcCchhHHHHHHHHHhhcCCCCc
Q 010405 315 LGACRVHRNAEMGQRIGNMLIESDQNHD 342 (511)
Q Consensus 315 l~~~~~~g~~~~a~~~~~~~~~~~p~~~ 342 (511)
...+...|+.+.|..+++++++..|++.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 6667789999999999999999999764
No 216
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.088 Score=48.06 Aligned_cols=96 Identities=13% Similarity=0.013 Sum_probs=49.3
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc---CCHHHHHHHHHhcCCC---CeeehHHH
Q 010405 138 NSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC---GSIDLAMQVFHSYGDK---DVSAYTSA 211 (511)
Q Consensus 138 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~---g~~~~A~~~~~~~~~~---~~~~~~~l 211 (511)
|...|..|..+|...|+.+.|...|....+.- ++++..+..+..++... ....++..+|+++... |+.+..-+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 55555555555555555555555555555542 33444444444443322 1234455555555432 33344445
Q ss_pred HHHHHHcCChHHHHHHHHHHHhC
Q 010405 212 IFGLAMNGHSIEAFELFENMKSK 234 (511)
Q Consensus 212 i~~~~~~g~~~~A~~~~~~m~~~ 234 (511)
...+.+.|++.+|...|+.|.+.
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhc
Confidence 55556666666666666666654
No 217
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.35 E-value=0.24 Score=49.17 Aligned_cols=153 Identities=10% Similarity=0.093 Sum_probs=105.8
Q ss_pred HhcCChHHHHHHHh--cCC-CCChhHHHHHHHHHHHcCChHHHHHHHccCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh
Q 010405 22 SVCGRVRDARWVFD--ESD-DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQ 98 (511)
Q Consensus 22 ~~~g~~~~A~~~f~--~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 98 (511)
.-.|+++++.+... ++. .-+..-.+.+++-+-+.|.++.|+++-.. + ..-.+...++|+++.|.++.++
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D-----~---~~rFeLAl~lg~L~~A~~~a~~ 343 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTD-----P---DHRFELALQLGNLDIALEIAKE 343 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHHHHCCC
T ss_pred HHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCC-----h---HHHhHHHHhcCCHHHHHHHHHh
Confidence 34678888554443 221 12244588889999999999999988432 2 3455667889999999999877
Q ss_pred CCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHH
Q 010405 99 MPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCA 178 (511)
Q Consensus 99 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 178 (511)
.. +...|..|.....++|+++-|.+.|.+... +..|+-.|...|+.+.-.++-+.....| -+|
T Consensus 344 ~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n 406 (443)
T PF04053_consen 344 LD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DIN 406 (443)
T ss_dssp CS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HH
T ss_pred cC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHH
Confidence 65 667999999999999999999999987643 6677778888999988888888887776 234
Q ss_pred HHHHHHHhcCCHHHHHHHHHh
Q 010405 179 ALIDMYAKCGSIDLAMQVFHS 199 (511)
Q Consensus 179 ~li~~y~~~g~~~~A~~~~~~ 199 (511)
....++.-.|+.++..+++.+
T Consensus 407 ~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 407 IAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHH
Confidence 444555567888888777654
No 218
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.26 E-value=0.42 Score=37.91 Aligned_cols=140 Identities=14% Similarity=0.118 Sum_probs=82.2
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHH
Q 010405 216 AMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA 295 (511)
Q Consensus 216 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 295 (511)
...|..++..++..+...+. +..-++.++.-....-+-+-..+.++.+-+.+.+. .+|++...
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHH
Confidence 34577777777777766532 34445555544444445555555666555422222 23333333
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 010405 296 ENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIK 374 (511)
Q Consensus 296 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 374 (511)
..-+-.++ .+......-+......|.-+.-.+++..+.+.+..+|.....++.+|.+.|+..++.+++++.-++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33333332 234445556777888999999999999988655557789999999999999999999999999999875
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.24 E-value=0.009 Score=43.47 Aligned_cols=60 Identities=12% Similarity=0.018 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHhhc----CCC---CchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 010405 310 IWGTLLGACRVHRNAEMGQRIGNMLIES----DQN---HDGRYILLSNIYVETLKGENAEEVRKTMR 369 (511)
Q Consensus 310 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 369 (511)
+++.+...+...|++++|+..+++++++ .++ -..++..++.+|...|++++|.+.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555566666666666666666552 111 13455666677777777777777666543
No 220
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.20 E-value=0.024 Score=47.09 Aligned_cols=61 Identities=18% Similarity=0.117 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 310 IWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 310 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
....++..+...|+++.|...++++...+|.+...|..++.+|...|+..+|.++++++.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4556677788999999999999999999999999999999999999999999999987753
No 221
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.18 E-value=0.41 Score=42.29 Aligned_cols=49 Identities=10% Similarity=-0.019 Sum_probs=35.3
Q ss_pred HHHHHHhcCchhHHHHHHHHHhhcCCCCc---hhHHHHHHHHHHcCCchHHH
Q 010405 314 LLGACRVHRNAEMGQRIGNMLIESDQNHD---GRYILLSNIYVETLKGENAE 362 (511)
Q Consensus 314 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~ 362 (511)
+..-|.+.|.+..|..-++.+++.-|+.+ .+...++.+|.+.|..+.|.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 34557888899999999999999888654 34567788888888877443
No 222
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.18 E-value=0.84 Score=40.41 Aligned_cols=85 Identities=9% Similarity=-0.046 Sum_probs=45.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHhcCchhHHHHHHHHHhh----cCCCCchhHHH
Q 010405 280 ACMVDLLGRAGLLEEAENFIASMP-------MKPDN-VIWGTLLGACRVHRNAEMGQRIGNMLIE----SDQNHDGRYIL 347 (511)
Q Consensus 280 ~~li~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~p~~~~~~~~ 347 (511)
..+...|.+..++++|-..|.+-+ .-|+. ..+-+.|-.+....++..|++.++.-.+ ..|.+..+...
T Consensus 154 gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~len 233 (308)
T KOG1585|consen 154 GKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLEN 233 (308)
T ss_pred HHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHH
Confidence 334445555666666555444331 11222 1233344445555667777777776544 34555666666
Q ss_pred HHHHHHHcCCchHHHHHH
Q 010405 348 LSNIYVETLKGENAEEVR 365 (511)
Q Consensus 348 l~~~~~~~g~~~~A~~~~ 365 (511)
|+.+| ..|+.+++..++
T Consensus 234 LL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 234 LLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHh-ccCCHHHHHHHH
Confidence 66666 345666665554
No 223
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.07 E-value=1.5 Score=42.39 Aligned_cols=62 Identities=13% Similarity=0.219 Sum_probs=52.2
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhcCCCCCh---hHHHHHHHHHHHcCChHHHHHHHccCC
Q 010405 8 AYDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDV---VSWNSMINGYVRNGEILEGLKLFDKMP 69 (511)
Q Consensus 8 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~ 69 (511)
+.|..+|-.||..|...|.+++-++++++|..|-+ .+|..-|++=....++.....+|.+..
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL 103 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCL 103 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHH
Confidence 45788999999999999999999999999987643 578888888777788888888887765
No 224
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.07 E-value=0.074 Score=42.61 Aligned_cols=78 Identities=17% Similarity=0.227 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHch--------------hhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC---
Q 010405 240 SISYIAVLSACSHLGWVEKGFYYFHSMF--------------DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM--- 302 (511)
Q Consensus 240 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~--------------~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--- 302 (511)
..++..++.++++.|+++....+.+..- ......|+..+..+++.+|+..|++..|+++++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3455555555555555555555554331 11223344455555555555555555555544433
Q ss_pred -CCCCCHHHHHHHHHH
Q 010405 303 -PMKPDNVIWGTLLGA 317 (511)
Q Consensus 303 -~~~p~~~~~~~ll~~ 317 (511)
++.-+...|..|+.-
T Consensus 82 Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEW 97 (126)
T ss_pred cCCCCCHHHHHHHHHH
Confidence 333334445444433
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.99 E-value=0.014 Score=42.42 Aligned_cols=60 Identities=13% Similarity=0.132 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhh
Q 010405 277 DHYACMVDLLGRAGLLEEAENFIASM-------P-MKPD-NVIWGTLLGACRVHRNAEMGQRIGNMLIE 336 (511)
Q Consensus 277 ~~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (511)
.+|+.+...|.+.|++++|++.|++. + ..|+ ..++..+...+...|++++|++.++++.+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34555555566666666555555443 1 1122 33555566667777777777777776654
No 226
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.85 E-value=0.6 Score=47.01 Aligned_cols=113 Identities=11% Similarity=0.078 Sum_probs=77.0
Q ss_pred HhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHH
Q 010405 250 CSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQR 329 (511)
Q Consensus 250 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 329 (511)
+...|-.+.+.++-.++.. .+.++...+..-+-+...+.-|-++|.+|+.. .+++......+++.+|..
T Consensus 726 ~~d~gW~d~lidI~rkld~-----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------ksiVqlHve~~~W~eAFa 794 (1081)
T KOG1538|consen 726 CGDHGWVDMLIDIARKLDK-----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL------KSLVQLHVETQRWDEAFA 794 (1081)
T ss_pred hhcccHHHHHHHHHhhcch-----hhhhHHHHHHHHHhhccccchHHHHHHHhccH------HHHhhheeecccchHhHh
Confidence 3344444444444444332 34556666666667778888999999999732 345667778899999999
Q ss_pred HHHHHhhcCCCCchh----------HHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010405 330 IGNMLIESDQNHDGR----------YILLSNIYVETLKGENAEEVRKTMRKRKI 373 (511)
Q Consensus 330 ~~~~~~~~~p~~~~~----------~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 373 (511)
+.++.-+..|+-... +.-.-.+|.++|+-.+|.++++++....+
T Consensus 795 lAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 795 LAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred hhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 999888876653322 33345678899999999999998865444
No 227
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.77 E-value=1.3 Score=39.15 Aligned_cols=121 Identities=17% Similarity=0.098 Sum_probs=57.9
Q ss_pred HHhccCCHHHHHHHHHHchhhcCC--CCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCc
Q 010405 249 ACSHLGWVEKGFYYFHSMFDVHGI--KPELDHYACMVDLLGRAGLLEEAENFIASM-PMKPD--NVIWGTLLGACRVHRN 323 (511)
Q Consensus 249 ~~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~~g~ 323 (511)
.+...|+.+.+...+..... ... ......+......+...++.++|...+... ...|+ ...+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 34445555555555554432 110 011222223333344455555555555544 22222 3445555555555556
Q ss_pred hhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 324 AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 324 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
.+.+...+.......|.....+..+...+...+.++++...+....+
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666665554334444444444455556666655555443
No 228
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.75 E-value=1.8 Score=47.05 Aligned_cols=125 Identities=14% Similarity=0.103 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH----HhccCCHHHHHHHH
Q 010405 188 GSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA----CSHLGWVEKGFYYF 263 (511)
Q Consensus 188 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~----~~~~g~~~~a~~~~ 263 (511)
+++++|+.-+.++. ...|.-.+..--++|.+.+|+.++ +|+...+..+..+ +...+.+++|--.|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 56666666665554 223444444444566666666654 3444444433333 33344444444444
Q ss_pred HHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCchhHHHHHHHH
Q 010405 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVI--WGTLLGACRVHRNAEMGQRIGNM 333 (511)
Q Consensus 264 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~ 333 (511)
...-+ ..--+.+|..+|+|.+|+.+..++....|... -..|.+-+...++.-+|-++..+
T Consensus 963 e~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e 1024 (1265)
T KOG1920|consen 963 ERCGK----------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLE 1024 (1265)
T ss_pred HHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Confidence 43322 11234455556666666666555532223222 13444555555555555544444
No 229
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.69 E-value=0.12 Score=41.43 Aligned_cols=100 Identities=16% Similarity=0.113 Sum_probs=71.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010405 173 DSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSH 252 (511)
Q Consensus 173 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 252 (511)
|..++.+++-++++.|+++....+++..=.-|+.. -...+. --......|+..+..+++.+|+.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~-------~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~ 64 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNG-------KKKEGD---------YPPSSPLYPTSRLLIAIVHSFGY 64 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCC-------ccccCc---------cCCCCCCCCCHHHHHHHHHHHHh
Confidence 34567778888888888888877776553221110 000000 11234578999999999999999
Q ss_pred cCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHH
Q 010405 253 LGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGR 288 (511)
Q Consensus 253 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 288 (511)
.|++..|.++.+...+.++++-+...|..|+.-...
T Consensus 65 n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 65 NGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred cccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999988888889888875443
No 230
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.60 E-value=0.11 Score=46.85 Aligned_cols=91 Identities=18% Similarity=0.194 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCC---CchhHHH
Q 010405 278 HYACMVDLLGRAGLLEEAENFIASM-------PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQN---HDGRYIL 347 (511)
Q Consensus 278 ~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~ 347 (511)
.|+.-++.| +.|++.+|.+-|... ...||..-| |..++...|+++.|..+|..+.+..|+ -|..+.-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 355444433 455566666666554 133455555 666677777777777777777774443 3456666
Q ss_pred HHHHHHHcCCchHHHHHHHHHHhC
Q 010405 348 LSNIYVETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 348 l~~~~~~~g~~~~A~~~~~~m~~~ 371 (511)
|+....+.|+.++|..+|++..++
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 777777777777777777776653
No 231
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.55 E-value=0.1 Score=43.34 Aligned_cols=70 Identities=21% Similarity=0.189 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCccHHH
Q 010405 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK-----KCIKLDSIL 176 (511)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 176 (511)
....++..+...|++++|+.+.+.+.... +-|...|..++.++...|+...|.+.|+.+.+ .|++|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34455666677777777777777777653 44667777777777777777777777766543 466666554
No 232
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.14 Score=48.62 Aligned_cols=87 Identities=11% Similarity=-0.004 Sum_probs=69.4
Q ss_pred HHHHHcCCHHHHHHHHHhC--------CCC---------CCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHH
Q 010405 284 DLLGRAGLLEEAENFIASM--------PMK---------PDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYI 346 (511)
Q Consensus 284 ~~~~~~g~~~~A~~~~~~~--------~~~---------p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 346 (511)
..|.+.|++..|..-|++. +.. .-..++..|..++.+.+++..|++...++++.+|+|....+
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALy 295 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALY 295 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHH
Confidence 4566666666666665553 111 12345667777889999999999999999999999999999
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHh
Q 010405 347 LLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 347 ~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
.-+.+|...|+++.|+..|+++.+
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHH
Confidence 999999999999999999999986
No 233
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.48 E-value=1.6 Score=38.42 Aligned_cols=221 Identities=18% Similarity=0.089 Sum_probs=138.4
Q ss_pred CChhHHHHHHHHHHHCCCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCccHHHHHHHHHHHHhcCCHHHHHH
Q 010405 118 GRPKEALALFREMQSLDLE-PNSAILVSLLSACAQLGALDYGNWVYSYIQKK-CIKLDSILCAALIDMYAKCGSIDLAMQ 195 (511)
Q Consensus 118 g~~~~A~~~~~~m~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~y~~~g~~~~A~~ 195 (511)
+....+...+......... .....+......+...+.+..+...+...... ........+..+...+...++++.+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444544444443211 12455555666666666666666666665542 223445555566666666677777777
Q ss_pred HHHhcCCC--Ce-eehHHHHH-HHHHcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHchhh
Q 010405 196 VFHSYGDK--DV-SAYTSAIF-GLAMNGHSIEAFELFENMKSKGI--SPDSISYIAVLSACSHLGWVEKGFYYFHSMFDV 269 (511)
Q Consensus 196 ~~~~~~~~--~~-~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 269 (511)
.+...... +. ........ .+...|+.++|...+.+...... ......+......+...++.+.+...+....+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~- 195 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK- 195 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh-
Confidence 77766542 21 22333333 67788888888888888755221 11233444444446677889999998888876
Q ss_pred cCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCC
Q 010405 270 HGIKP-ELDHYACMVDLLGRAGLLEEAENFIASM-PMKPD-NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQN 340 (511)
Q Consensus 270 ~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 340 (511)
..+. ....+..+...+...+++++|...+... ...|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 196 -~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 -LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred -hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 2233 3667788888888888999999888776 44454 445555555555677799999999999998875
No 234
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.43 E-value=0.48 Score=44.33 Aligned_cols=47 Identities=19% Similarity=0.230 Sum_probs=24.8
Q ss_pred HHHCCChhHHHHHHHHHHHC--CCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 010405 114 FAQNGRPKEALALFREMQSL--DLEPNSAILVSLLSACAQLGALDYGNW 160 (511)
Q Consensus 114 ~~~~g~~~~A~~~~~~m~~~--~~~p~~~t~~~ll~~~~~~~~~~~a~~ 160 (511)
+.+..+.++|+..+.+-+.. +...-..++..+..+.++.|.++++..
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 34566777777776655432 111122445555566666666555443
No 235
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.39 E-value=0.54 Score=44.78 Aligned_cols=131 Identities=10% Similarity=-0.003 Sum_probs=85.4
Q ss_pred eehHHHHHHHHHcCChHHHHHHHHHH----HhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHchhh---cCC-CCCH
Q 010405 206 SAYTSAIFGLAMNGHSIEAFELFENM----KSKGISP-DSISYIAVLSACSHLGWVEKGFYYFHSMFDV---HGI-KPEL 276 (511)
Q Consensus 206 ~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~-~p~~ 276 (511)
.+|..|...|.-.|+++.|+..-+.= ++.|-+. ....+..+..++.-.|+++.|.+.|+..... .|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 45666666666778888887654432 2223221 2345667777888888888888888765320 111 1224
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-------C-CCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhh
Q 010405 277 DHYACMVDLLGRAGLLEEAENFIASM-------P-MKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIE 336 (511)
Q Consensus 277 ~~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (511)
.+.-.|...|.-...+++|+.++.+- . ..-....+.+|..++...|..++|+.+.+..++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45566777887777888888777543 1 112556777888888888888888888877766
No 236
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.34 E-value=0.13 Score=50.02 Aligned_cols=61 Identities=10% Similarity=0.083 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCH----hHHHHHHHHHHHcCCHHHHHHHHHhC
Q 010405 239 DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPEL----DHYACMVDLLGRAGLLEEAENFIASM 302 (511)
Q Consensus 239 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~ 302 (511)
+...++.+..+|...|++++|+..|++..+ +.|+. ..|..+..+|...|++++|++.+++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456788888888888888888888888876 45653 34788888888888888888888876
No 237
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.28 E-value=3.8 Score=41.33 Aligned_cols=332 Identities=14% Similarity=0.091 Sum_probs=195.8
Q ss_pred hcCChHHHHHHHhcCC---CCChhHHHHHHHHH-HHcCChHHHHHHHccCCC------CChhHHHHHHHHHHhcCCHHHH
Q 010405 23 VCGRVRDARWVFDESD---DLDVVSWNSMINGY-VRNGEILEGLKLFDKMPQ------RNDVSWNSILGGLVRFGSVDDA 92 (511)
Q Consensus 23 ~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~------~~~~~~~~li~~~~~~g~~~~A 92 (511)
+-|..+.+.++|++.. +.++..|.....-+ ...|+.+.....|+.... .+...|...|.--..++++...
T Consensus 91 klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v 170 (577)
T KOG1258|consen 91 KLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRV 170 (577)
T ss_pred HhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHH
Confidence 4477788888888654 34666676665443 346777777777777764 3455677777777778888888
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHH---C------CChhHHHHHHHHHHH--------------------CCCCCCH--hH
Q 010405 93 CRVFNQMPKRSLVSWVVLISGFAQ---N------GRPKEALALFREMQS--------------------LDLEPNS--AI 141 (511)
Q Consensus 93 ~~~~~~~~~~~~~~~~~li~~~~~---~------g~~~~A~~~~~~m~~--------------------~~~~p~~--~t 141 (511)
..+++++.+-....++..-.-|.+ . ...+++.++-..... .+-+.+. ..
T Consensus 171 ~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~ 250 (577)
T KOG1258|consen 171 ANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEE 250 (577)
T ss_pred HHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHH
Confidence 888888765333333333332222 1 122333222211110 0000000 01
Q ss_pred HHHHHHHHH-------hcCCHHHHHHHHHHHHHcC---C----CccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---
Q 010405 142 LVSLLSACA-------QLGALDYGNWVYSYIQKKC---I----KLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD--- 204 (511)
Q Consensus 142 ~~~ll~~~~-------~~~~~~~a~~~~~~~~~~~---~----~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~--- 204 (511)
.+.+...+. ........+..++.-++.- + +++..+|...++.-.+.|+.+.+.-.|++..-|-
T Consensus 251 ~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y 330 (577)
T KOG1258|consen 251 KTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALY 330 (577)
T ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhh
Confidence 111111111 1111122222222222221 1 2346688888888899999999999999887642
Q ss_pred eeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC-HhHHHHHH
Q 010405 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE-LDHYACMV 283 (511)
Q Consensus 205 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li 283 (511)
...|-..+.-....|+.+-|-.++....+--++-.+.+-..-..-+-..|+.+.|..+++.+..+ . |+ +..-..-+
T Consensus 331 ~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~ 407 (577)
T KOG1258|consen 331 DEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKI 407 (577)
T ss_pred HHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHH
Confidence 23455555555556888888888877665433323332222222355678999999999999873 3 55 34444456
Q ss_pred HHHHHcCCHHHHH---HHHHhC-CCCCCHHHHHHHH----HH-HHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q 010405 284 DLLGRAGLLEEAE---NFIASM-PMKPDNVIWGTLL----GA-CRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVE 354 (511)
Q Consensus 284 ~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~ll----~~-~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 354 (511)
....+.|..+.+. +++... +.+-+..+...+. .- +...++.+.|..++.++.+..|++...|..+++....
T Consensus 408 ~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~ 487 (577)
T KOG1258|consen 408 NWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELI 487 (577)
T ss_pred hHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHh
Confidence 6777889988888 555444 2222222222222 22 4567889999999999999999999999999988777
Q ss_pred cCC
Q 010405 355 TLK 357 (511)
Q Consensus 355 ~g~ 357 (511)
.+.
T Consensus 488 ~~~ 490 (577)
T KOG1258|consen 488 QPS 490 (577)
T ss_pred CCc
Confidence 663
No 238
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=1.1 Score=41.01 Aligned_cols=130 Identities=11% Similarity=0.058 Sum_probs=90.4
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHH---HH
Q 010405 239 DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGT---LL 315 (511)
Q Consensus 239 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---ll 315 (511)
...++. -.......|+..+|...|+..... .+-+...-..+...|...|+.++|..++..+|.+-...-|.. -+
T Consensus 134 ~e~~~~-~~~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i 210 (304)
T COG3118 134 EEEALA-EAKELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQI 210 (304)
T ss_pred HHHHHH-HhhhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 344443 233456789999999999998872 233456777889999999999999999999975544333433 22
Q ss_pred HHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 316 GACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
..+.+..+..+...+-+ -...+|+|...-..|+..|...|+.++|.+.+=.+.+++
T Consensus 211 ~ll~qaa~~~~~~~l~~-~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 211 ELLEQAAATPEIQDLQR-RLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred HHHHHHhcCCCHHHHHH-HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 33334444433333322 234589998999999999999999999999887776543
No 239
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.24 E-value=0.56 Score=38.11 Aligned_cols=60 Identities=17% Similarity=0.065 Sum_probs=39.2
Q ss_pred HHHHHcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCch
Q 010405 284 DLLGRAGLLEEAENFIASM----PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDG 343 (511)
Q Consensus 284 ~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 343 (511)
....+.|++++|.+.|+.+ |..| ....--.|+.++...+++++|...+++.++++|.++.
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 3344567777777777766 2222 2234445667777788888888888888887776653
No 240
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.21 E-value=0.13 Score=46.34 Aligned_cols=100 Identities=17% Similarity=0.224 Sum_probs=80.2
Q ss_pred HHHHHHhcC--CCCeeehHHHHHHHHHc-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-----------
Q 010405 193 AMQVFHSYG--DKDVSAYTSAIFGLAMN-----GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG----------- 254 (511)
Q Consensus 193 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g----------- 254 (511)
.++.|.... ++|-.+|-+++..+... +..+-....++.|.+.|+.-|..+|..||..+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 355666666 56778888888888754 567777778899999999999999999998876532
Q ss_pred -----CHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHH
Q 010405 255 -----WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLE 293 (511)
Q Consensus 255 -----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 293 (511)
+-+=++.++++|.. +|+.||-++-..|+.++++.+..-
T Consensus 133 ~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred hhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccH
Confidence 23457899999987 999999999999999999988643
No 241
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.20 E-value=1.2 Score=36.39 Aligned_cols=44 Identities=18% Similarity=0.098 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 010405 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC 187 (511)
Q Consensus 143 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 187 (511)
..++..+...+.......+++.+.+.+ +.+....+.++..|++.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 445566666666666667666666665 34555666666666654
No 242
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.19 E-value=0.58 Score=50.54 Aligned_cols=159 Identities=19% Similarity=0.196 Sum_probs=100.9
Q ss_pred cCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010405 86 FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYI 165 (511)
Q Consensus 86 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 165 (511)
.+++++|+.-+.++. ...|.-.++--.+.|.+.+|+.++ +|+...+..+..+|+. .+
T Consensus 893 L~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~------------hL 949 (1265)
T KOG1920|consen 893 LKRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYAD------------HL 949 (1265)
T ss_pred HHHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHH------------HH
Confidence 456666666665554 223444444455667777777664 6788888777766653 22
Q ss_pred HHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHH--H
Q 010405 166 QKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSIS--Y 243 (511)
Q Consensus 166 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~ 243 (511)
.+.. .|+--.-+|.++|+.++|++. |...|+|.+|+.+..++... -+... -
T Consensus 950 ~~~~------~~~~Aal~Ye~~GklekAl~a------------------~~~~~dWr~~l~~a~ql~~~---~de~~~~a 1002 (1265)
T KOG1920|consen 950 REEL------MSDEAALMYERCGKLEKALKA------------------YKECGDWREALSLAAQLSEG---KDELVILA 1002 (1265)
T ss_pred HHhc------cccHHHHHHHHhccHHHHHHH------------------HHHhccHHHHHHHHHhhcCC---HHHHHHHH
Confidence 2221 122234568889999998664 45678999999988877532 12222 2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 010405 244 IAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP 303 (511)
Q Consensus 244 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 303 (511)
..|..-+...++.-+|-++..+... . ..-.+..|++...+++|..+.....
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~s----d-----~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLS----D-----PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhc----C-----HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 4566777788888888777776654 2 2334566777888888888776654
No 243
>PRK15331 chaperone protein SicA; Provisional
Probab=95.18 E-value=0.27 Score=40.93 Aligned_cols=85 Identities=19% Similarity=0.069 Sum_probs=36.8
Q ss_pred HHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 010405 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLA 193 (511)
Q Consensus 114 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 193 (511)
+.+.|++++|..+|+-+...+ .-+..-+..|..++-..+++++|...|......+. -|+...--....|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 344555555555555444332 11233334444444444555555555544433321 1222222234444445555555
Q ss_pred HHHHHhc
Q 010405 194 MQVFHSY 200 (511)
Q Consensus 194 ~~~~~~~ 200 (511)
+..|+..
T Consensus 125 ~~~f~~a 131 (165)
T PRK15331 125 RQCFELV 131 (165)
T ss_pred HHHHHHH
Confidence 5544443
No 244
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.08 E-value=0.31 Score=46.42 Aligned_cols=120 Identities=18% Similarity=0.111 Sum_probs=88.6
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC--------C----------ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhH
Q 010405 80 LGGLVRFGSVDDACRVFNQMPK--------R----------SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAI 141 (511)
Q Consensus 80 i~~~~~~g~~~~A~~~~~~~~~--------~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 141 (511)
.+.|.+.|++..|...|++... + -..+++.+..+|.+.+++.+|++.-.+.+..+ ++|...
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 3467888999998888877431 0 12468888899999999999999999888875 668888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH-HHHHHHhcC
Q 010405 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDL-AMQVFHSYG 201 (511)
Q Consensus 142 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~-A~~~~~~~~ 201 (511)
..--..++...|+++.|+..|+++++.. |.|-.+-+-|+.+-.+..+..+ ..++|..|-
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888999999999999999999999863 3344455555555444444333 356666654
No 245
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.08 E-value=1 Score=45.47 Aligned_cols=159 Identities=14% Similarity=0.063 Sum_probs=100.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCC-CCCCH-----HHHHHHHHHHh----ccCCHHHHHHHHHHchhhcCCCCCHhH
Q 010405 209 TSAIFGLAMNGHSIEAFELFENMKSKG-ISPDS-----ISYIAVLSACS----HLGWVEKGFYYFHSMFDVHGIKPELDH 278 (511)
Q Consensus 209 ~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~t~~~ll~~~~----~~g~~~~a~~~~~~~~~~~~~~p~~~~ 278 (511)
..++....-.|+-+.+++.+.+..+.+ +.-.. .+|..++..+. ...+.+.|.+++..+.+. -|+...
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~l 268 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSAL 268 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHH
Confidence 344444555666667777666654422 22111 12333333332 245678888898888873 355444
Q ss_pred HH-HHHHHHHHcCCHHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHH-HHHH
Q 010405 279 YA-CMVDLLGRAGLLEEAENFIASMPM-K-----PDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYI-LLSN 350 (511)
Q Consensus 279 ~~-~li~~~~~~g~~~~A~~~~~~~~~-~-----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~-~l~~ 350 (511)
|. .-.+.+...|++++|.+.|++.-. + .....+--+.-.+....++++|...+.++.+...-+..+|. ..+.
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 43 445667778999999999987521 1 12334445556677889999999999999997666555655 4455
Q ss_pred HHHHcCCc-------hHHHHHHHHHHh
Q 010405 351 IYVETLKG-------ENAEEVRKTMRK 370 (511)
Q Consensus 351 ~~~~~g~~-------~~A~~~~~~m~~ 370 (511)
+|...|+. ++|.+++++...
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 56788888 888888877654
No 246
>PRK11906 transcriptional regulator; Provisional
Probab=95.03 E-value=0.54 Score=45.94 Aligned_cols=115 Identities=10% Similarity=0.050 Sum_probs=70.3
Q ss_pred HHHHHHHHHHchhhcCCCCC-HhHHHHHHHHHHH---------cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCc
Q 010405 256 VEKGFYYFHSMFDVHGIKPE-LDHYACMVDLLGR---------AGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRN 323 (511)
Q Consensus 256 ~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~---------~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 323 (511)
.+.|..+|.+......+.|+ ...|..+...+.. .....+|.++.++. ...| |+.....+..+....++
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Confidence 34566666666532334454 3333333322211 12334555555544 3333 55555555555666677
Q ss_pred hhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 324 AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 324 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
.+.|...|+++..++|+.+.+|...+....-.|+.++|.+.+++..+
T Consensus 354 ~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 354 AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888888888888888888888888888888888888888877544
No 247
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.94 E-value=1.9 Score=43.00 Aligned_cols=131 Identities=12% Similarity=0.135 Sum_probs=99.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCChhHHHHHHHHHHhcCCHHHH
Q 010405 13 VKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDA 92 (511)
Q Consensus 13 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 92 (511)
-.+.+++.+-+.|..+.|+++-.. + ..-.....+.|+++.|.++-++.. +...|..|.+...+.|+++-|
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D-----~---~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lA 366 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTD-----P---DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELA 366 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCC-----h---HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHH
Confidence 389999999999999999988643 2 233445668999999999987775 677999999999999999999
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 010405 93 CRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSY 164 (511)
Q Consensus 93 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 164 (511)
++.|.+... |..|+-.|.-.|+.++-.++-+.....| -++....++.-.|+.++..+++..
T Consensus 367 e~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 367 EECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999754 6678888889999888878777776665 255566666777888777666543
No 248
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.88 E-value=3.3 Score=38.60 Aligned_cols=99 Identities=8% Similarity=0.009 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CeeehHHHHHH
Q 010405 141 ILVSLLSACAQLGALD---YGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK---DVSAYTSAIFG 214 (511)
Q Consensus 141 t~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~ 214 (511)
++..++.++...+..+ +|..+.+.+.... +-.+.++-.-+..+.+.++.+.+.+++.+|... ....+...+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 4445555665555443 3444444553332 222344444455555567777777777766542 22345544444
Q ss_pred HHH--cCChHHHHHHHHHHHhCCCCCCH
Q 010405 215 LAM--NGHSIEAFELFENMKSKGISPDS 240 (511)
Q Consensus 215 ~~~--~g~~~~A~~~~~~m~~~g~~p~~ 240 (511)
+-. ......|...+..+....+.|..
T Consensus 165 i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 165 IKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 421 12234555555555544444443
No 249
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.88 E-value=2.7 Score=40.51 Aligned_cols=72 Identities=13% Similarity=0.096 Sum_probs=43.9
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCC-------ChhHHHHHHHHHHH---CCChhHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 010405 78 SILGGLVRFGSVDDACRVFNQMPKR-------SLVSWVVLISGFAQ---NGRPKEALALFREMQSLDLEPNSAILVSLLS 147 (511)
Q Consensus 78 ~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 147 (511)
.++-.|-...+++...++.+.+... ....-....-++.+ .|+.++|++++..+....-.+++.||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3334567777777777777777642 11122233444555 6777777777777555555667777776666
Q ss_pred HH
Q 010405 148 AC 149 (511)
Q Consensus 148 ~~ 149 (511)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 55
No 250
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.82 E-value=1.8 Score=35.38 Aligned_cols=42 Identities=17% Similarity=0.268 Sum_probs=19.0
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 010405 109 VLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151 (511)
Q Consensus 109 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 151 (511)
.++..+.+.+.+.....+++.+...+ ..+....+.++..+++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 34444444444555555444444443 2334444444444443
No 251
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.81 E-value=0.32 Score=38.43 Aligned_cols=89 Identities=15% Similarity=0.097 Sum_probs=63.3
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcC-CCC---chhHHHHHHHHHHcCCc
Q 010405 285 LLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESD-QNH---DGRYILLSNIYVETLKG 358 (511)
Q Consensus 285 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~---~~~~~~l~~~~~~~g~~ 358 (511)
++...|+++.|++.|.+. .+-| ....||.-..+++-+|+.++|+.-+++++++. |.. -..|+.-+..|-..|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 466778888888888765 2333 56678888888888888888888888888843 321 12456667778888888
Q ss_pred hHHHHHHHHHHhCCC
Q 010405 359 ENAEEVRKTMRKRKI 373 (511)
Q Consensus 359 ~~A~~~~~~m~~~g~ 373 (511)
+.|..-|+...+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 888888877776554
No 252
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.80 E-value=2.8 Score=38.51 Aligned_cols=144 Identities=13% Similarity=0.032 Sum_probs=88.9
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC-HhHHHHHHHHHHHcCCH
Q 010405 214 GLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE-LDHYACMVDLLGRAGLL 292 (511)
Q Consensus 214 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~ 292 (511)
.....|+..+|..+|......... +...-..+..++...|+.+.|..++..+..+ ..-+ ......-+..+.+....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~--~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ--AQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc--chhhHHHHHHHHHHHHHHHhcC
Confidence 455677788888888877765322 3344455777788888888888888877541 1111 11122334555555555
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhh--cCCCCchhHHHHHHHHHHcCCchH
Q 010405 293 EEAENFIASMPMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIE--SDQNHDGRYILLSNIYVETLKGEN 360 (511)
Q Consensus 293 ~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~ 360 (511)
.+..++-++....| |...-..+...+...|+.+.|.+.+-.+++ ..-.+...-..|+..+.-.|.-+.
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 55555555554455 555556666778888888888877766666 333455666677777777775444
No 253
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.78 E-value=0.3 Score=44.04 Aligned_cols=99 Identities=12% Similarity=0.156 Sum_probs=70.0
Q ss_pred HHHHHhhCC--CCChhHHHHHHHHHHHC-----CChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC-----------
Q 010405 92 ACRVFNQMP--KRSLVSWVVLISGFAQN-----GRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG----------- 153 (511)
Q Consensus 92 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~----------- 153 (511)
.++.|.... ++|-.+|-+++..|... +..+=....++.|.+.|+.-|..+|..|++.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345555555 45666676666666543 444555556777888888888888888887654322
Q ss_pred -----CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 010405 154 -----ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSI 190 (511)
Q Consensus 154 -----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 190 (511)
+-+-++.++++|...|+.||-.+-..|++++.+.+-.
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 2345788999999999999999999999998877653
No 254
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.67 E-value=6.5 Score=40.98 Aligned_cols=74 Identities=16% Similarity=0.108 Sum_probs=43.8
Q ss_pred HHHHHhcCChHHHHHHHhcCCC--C---ChhHHHHHHHHHHHcCChHHHHHHHccCCCCChhHHHHHHHHHHhcCCHHH
Q 010405 18 IQFYSVCGRVRDARWVFDESDD--L---DVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDD 91 (511)
Q Consensus 18 i~~~~~~g~~~~A~~~f~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~ 91 (511)
++-+.+.+.+++|++.-+.... + -...+...|..+.-.|++++|-...-.|...+..-|.--+.-++..++...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccch
Confidence 3445566677777777665442 1 223466677777777777777776666665555555555555555555443
No 255
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.57 E-value=0.86 Score=42.27 Aligned_cols=112 Identities=17% Similarity=0.099 Sum_probs=53.5
Q ss_pred cCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHH----HHHHhccCCHHHH
Q 010405 187 CGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAV----LSACSHLGWVEKG 259 (511)
Q Consensus 187 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l----l~~~~~~g~~~~a 259 (511)
.|+..+|-..++++.+ .|..+++-.=.++..+|+.+.-...++++... ..||...|..+ .-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 4555555555555443 25555555555566666655555555555432 12232222111 1122345555555
Q ss_pred HHHHHHchhhcCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 010405 260 FYYFHSMFDVHGIKP-ELDHYACMVDLLGRAGLLEEAENFIASM 302 (511)
Q Consensus 260 ~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 302 (511)
.+.-++..+ +.| |.-.-.++...+...|++.++.++..+-
T Consensus 195 Ek~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 195 EKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 555555443 222 2333344555555556666666655544
No 256
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.33 E-value=1.3 Score=35.96 Aligned_cols=18 Identities=22% Similarity=0.062 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHhhcCCCC
Q 010405 324 AEMGQRIGNMLIESDQNH 341 (511)
Q Consensus 324 ~~~a~~~~~~~~~~~p~~ 341 (511)
...|...|+.+++.-|++
T Consensus 115 ~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred HHHHHHHHHHHHHHCcCC
Confidence 557777777777777865
No 257
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.20 E-value=6 Score=38.61 Aligned_cols=45 Identities=13% Similarity=0.178 Sum_probs=32.8
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhcCC----C----CChhHHHHHHHHHHH
Q 010405 10 DVFVKNSLIQFYSVCGRVRDARWVFDESD----D----LDVVSWNSMINGYVR 54 (511)
Q Consensus 10 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~----~~~~~~~~li~~~~~ 54 (511)
|-+.-+..+..+.+.|++.+++.++++|. + -|+.+||.++-.+.+
T Consensus 127 df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 127 DFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhH
Confidence 34445667788889999999999988765 2 478888886555444
No 258
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.20 E-value=0.6 Score=42.22 Aligned_cols=86 Identities=21% Similarity=0.149 Sum_probs=42.0
Q ss_pred HcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC-HhHHHHHHHHHHHcCCHH
Q 010405 217 MNGHSIEAFELFENMKSKGIS--PDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE-LDHYACMVDLLGRAGLLE 293 (511)
Q Consensus 217 ~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~ 293 (511)
+.|++.+|...|...++.... -....+-.|..++...|+++.|..+|..+.+.++-.|. ++.+--|.....+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 344455666555555543211 01112333555555556666666555555554443333 244445555555555555
Q ss_pred HHHHHHHhC
Q 010405 294 EAENFIASM 302 (511)
Q Consensus 294 ~A~~~~~~~ 302 (511)
+|...+++.
T Consensus 233 ~A~atl~qv 241 (262)
T COG1729 233 EACATLQQV 241 (262)
T ss_pred HHHHHHHHH
Confidence 555555444
No 259
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.14 E-value=3.7 Score=41.52 Aligned_cols=173 Identities=18% Similarity=0.152 Sum_probs=106.9
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCcc-----HHHHHHHHHHHHh----cCCHHHH
Q 010405 124 LALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKC-IKLD-----SILCAALIDMYAK----CGSIDLA 193 (511)
Q Consensus 124 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~-----~~~~~~li~~y~~----~g~~~~A 193 (511)
.-+|.-+.+. +|| .+..+++...-.|+-+.+.+.+.+..+.+ +... .-.|...+..++. ....+.|
T Consensus 177 ~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 3455555553 444 35566777777788888888887776643 2111 1122333333332 4567888
Q ss_pred HHHHHhcCC--CCeeehHHH-HHHHHHcCChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHhccCCHHHHHHHHHHch
Q 010405 194 MQVFHSYGD--KDVSAYTSA-IFGLAMNGHSIEAFELFENMKSKG---ISPDSISYIAVLSACSHLGWVEKGFYYFHSMF 267 (511)
Q Consensus 194 ~~~~~~~~~--~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 267 (511)
.++++.+.+ |+..-|.-. ...+...|+.++|++.|++..... .+.....+--+.-.+....++++|.+.|..+.
T Consensus 253 ~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~ 332 (468)
T PF10300_consen 253 EELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLL 332 (468)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHH
Confidence 888888876 666655544 334566888999999988765321 11223444455666777889999999999988
Q ss_pred hhcCCCCCHhHHHHH-HHHHHHcCCH-------HHHHHHHHhC
Q 010405 268 DVHGIKPELDHYACM-VDLLGRAGLL-------EEAENFIASM 302 (511)
Q Consensus 268 ~~~~~~p~~~~~~~l-i~~~~~~g~~-------~~A~~~~~~~ 302 (511)
+..... ...|..+ .-.+...|+. ++|.++|.+.
T Consensus 333 ~~s~WS--ka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 333 KESKWS--KAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred hccccH--HHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 744443 3333333 2345566766 8888888877
No 260
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.11 E-value=16 Score=43.28 Aligned_cols=309 Identities=14% Similarity=0.085 Sum_probs=176.8
Q ss_pred HHHHHHHHcCChHHHHHHHccC----CCC--ChhHHHHHHHHHHhcCCHHHHHHHHhh-CCCCChhHHHHHHHHHHHCCC
Q 010405 47 SMINGYVRNGEILEGLKLFDKM----PQR--NDVSWNSILGGLVRFGSVDDACRVFNQ-MPKRSLVSWVVLISGFAQNGR 119 (511)
Q Consensus 47 ~li~~~~~~g~~~~A~~~~~~m----~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~ 119 (511)
++..+=.+.+.+.+|+..+++- .+. ....|..+...|+..+++|...-+... ...++. ..-|......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhcc
Confidence 4444555778888999888883 221 233444555589888888887777663 333433 245566778899
Q ss_pred hhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHH-HHHHHHhcCCHHHHHHHHH
Q 010405 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAA-LIDMYAKCGSIDLAMQVFH 198 (511)
Q Consensus 120 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~y~~~g~~~~A~~~~~ 198 (511)
+..|...|+.+.+.+ ++...+++.++..-...+.++...-..+-.... ..+....+++ =+.+--+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999999998864 334778888888777778777766644444333 2333333333 3455577888887777666
Q ss_pred hcCCCCeeehHHH-H-HHHHHcCC--hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHH----------H
Q 010405 199 SYGDKDVSAYTSA-I-FGLAMNGH--SIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF----------H 264 (511)
Q Consensus 199 ~~~~~~~~~~~~l-i-~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~----------~ 264 (511)
..+..+|.+. + ..+.+... .-.-.+..+.+++.-+.| +.+|+..|.+..+.++. .
T Consensus 1543 ---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~ 1611 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELEN 1611 (2382)
T ss_pred ---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHH
Confidence 6677777765 2 22222221 111123333333321111 11222222111111111 1
Q ss_pred HchhhcCCCCCHh------HHHHH---HHHHHHcCCHHHHHH-HHHhCCCCC-----CHHHHHHHHHHHHhcCchhHHHH
Q 010405 265 SMFDVHGIKPELD------HYACM---VDLLGRAGLLEEAEN-FIASMPMKP-----DNVIWGTLLGACRVHRNAEMGQR 329 (511)
Q Consensus 265 ~~~~~~~~~p~~~------~~~~l---i~~~~~~g~~~~A~~-~~~~~~~~p-----~~~~~~~ll~~~~~~g~~~~a~~ 329 (511)
......++.++.. -|..- .+.+.+...+=-|.+ .+.....+| -..+|-.....++..|.++.|..
T Consensus 1612 ~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1612 SIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred HHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 1111112223211 11111 122222111111111 011111122 24578888888999999999999
Q ss_pred HHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010405 330 IGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKI 373 (511)
Q Consensus 330 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 373 (511)
..-.+.+..+ +..+.-.+......|+...|..+++.-.+...
T Consensus 1692 all~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1692 ALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 9888888665 47888999999999999999999998876554
No 261
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.05 E-value=0.59 Score=43.31 Aligned_cols=158 Identities=11% Similarity=0.019 Sum_probs=116.1
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHh----HHHHHHHHHHHcCC
Q 010405 216 AMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELD----HYACMVDLLGRAGL 291 (511)
Q Consensus 216 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~li~~~~~~g~ 291 (511)
.-.|+..+|-..++++++. .+.|...+...=.+|...|+.+.-...++++.. ...|+.. +-..+.-++..+|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 3478888888899998876 455777888888899999999999888888875 3345543 33445556678999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC----chhHHHHHHHHHHcCCchHHHHHH
Q 010405 292 LEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH----DGRYILLSNIYVETLKGENAEEVR 365 (511)
Q Consensus 292 ~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~ 365 (511)
+++|++.-++. .+.| |...-.++...+...|+..++.++..+-....... .-.|-..+-.|...+.++.|++++
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999999887 5554 56667777788889999999999887766533221 234556666778889999999999
Q ss_pred HHHHhCCCccC
Q 010405 366 KTMRKRKIKRA 376 (511)
Q Consensus 366 ~~m~~~g~~~~ 376 (511)
++=.-+.+.++
T Consensus 271 D~ei~k~l~k~ 281 (491)
T KOG2610|consen 271 DREIWKRLEKD 281 (491)
T ss_pred HHHHHHHhhcc
Confidence 86543333333
No 262
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.03 E-value=1.3 Score=43.49 Aligned_cols=150 Identities=9% Similarity=-0.042 Sum_probs=78.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCC
Q 010405 212 IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGL 291 (511)
Q Consensus 212 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 291 (511)
+.--.+..+.+.-+++-++.++ +.||-.+.-.++ +--....+.++.++|++..+ .| ...+..-- .....|.
T Consensus 175 Mq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvk-Ag----E~~lg~s~-~~~~~g~ 245 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVK-AG----EASLGKSQ-FLQHHGH 245 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHH-HH----HHhhchhh-hhhcccc
Confidence 3334455566666666666665 345543332222 33345567788888887765 11 00000000 0000111
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCC--CchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 010405 292 LEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQN--HDGRYILLSNIYVETLKGENAEEVRKTMR 369 (511)
Q Consensus 292 ~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 369 (511)
. .+.+..-..+|-..+=..|..++.+.|+.++|.+.++++.+..|. +..+...|+..+...+.+.++..++.+-.
T Consensus 246 ~---~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 246 F---WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred h---hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 0 111111111122333344666677778888888888888775554 34466678888888888888888877765
Q ss_pred hCCC
Q 010405 370 KRKI 373 (511)
Q Consensus 370 ~~g~ 373 (511)
+-..
T Consensus 323 Di~l 326 (539)
T PF04184_consen 323 DISL 326 (539)
T ss_pred cccC
Confidence 4433
No 263
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.86 E-value=7.4 Score=38.57 Aligned_cols=98 Identities=10% Similarity=0.144 Sum_probs=57.7
Q ss_pred HHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCC-C-CCCH--HHHHHHHHHHHh
Q 010405 245 AVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP-M-KPDN--VIWGTLLGACRV 320 (511)
Q Consensus 245 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~-~p~~--~~~~~ll~~~~~ 320 (511)
.+..++.+.|+.++|++.+.+|.++............|+..|...+.+.++..++.+.. + -|.. ..|++.+-..+.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRa 343 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARA 343 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHh
Confidence 34555566777777777777776633222234456677777777778887777777663 1 1333 244443333332
Q ss_pred cCc---------------hhHHHHHHHHHhhcCCCCc
Q 010405 321 HRN---------------AEMGQRIGNMLIESDQNHD 342 (511)
Q Consensus 321 ~g~---------------~~~a~~~~~~~~~~~p~~~ 342 (511)
.++ -..|.+.+.++.+.+|..+
T Consensus 344 v~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 344 VGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred hccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 222 1235677888888887543
No 264
>PRK09687 putative lyase; Provisional
Probab=93.68 E-value=6 Score=36.85 Aligned_cols=25 Identities=8% Similarity=-0.036 Sum_probs=11.0
Q ss_pred HHHHHHhcCchhHHHHHHHHHhhcCC
Q 010405 314 LLGACRVHRNAEMGQRIGNMLIESDQ 339 (511)
Q Consensus 314 ll~~~~~~g~~~~a~~~~~~~~~~~p 339 (511)
.+.++...|+. +|...+..+.+..|
T Consensus 241 a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 241 IIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 33444444442 34444444444334
No 265
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.63 E-value=0.14 Score=30.02 Aligned_cols=32 Identities=16% Similarity=-0.026 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHhhcCCC
Q 010405 309 VIWGTLLGACRVHRNAEMGQRIGNMLIESDQN 340 (511)
Q Consensus 309 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 340 (511)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35666677777777777777777777777774
No 266
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.54 E-value=3.7 Score=38.49 Aligned_cols=134 Identities=13% Similarity=0.219 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh--cC----CHHHHHHHHHHHHHcCC---CccHHHHHHHHHHHHhcCCHH
Q 010405 121 KEALALFREMQSLDLEPNSAILVSLLSACAQ--LG----ALDYGNWVYSYIQKKCI---KLDSILCAALIDMYAKCGSID 191 (511)
Q Consensus 121 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~y~~~g~~~ 191 (511)
++.+.+++.|.+.|++-+..+|.+....... .. ....+..+|+.|++... .++..++.+|+.. ..++.+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3455678888888888877777664444333 11 24556677777776532 1223333333221 222222
Q ss_pred HHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCC--HHHHHHHHHHch
Q 010405 192 LAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS--ISYIAVLSACSHLGW--VEKGFYYFHSMF 267 (511)
Q Consensus 192 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~--~~~a~~~~~~~~ 267 (511)
.- .+.+...|+.+.+.|+..+. .....+|..+..... ...+..+++.+.
T Consensus 157 ~l---------------------------~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~ 209 (297)
T PF13170_consen 157 EL---------------------------AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALK 209 (297)
T ss_pred HH---------------------------HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 11 23566777777776765542 233333333322222 346777888887
Q ss_pred hhcCCCCCHhHHHHHHH
Q 010405 268 DVHGIKPELDHYACMVD 284 (511)
Q Consensus 268 ~~~~~~p~~~~~~~li~ 284 (511)
+ .|+++...+|..+.-
T Consensus 210 ~-~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 210 K-NGVKIKYMHYPTLGL 225 (297)
T ss_pred H-cCCccccccccHHHH
Confidence 7 688887777765543
No 267
>PRK11906 transcriptional regulator; Provisional
Probab=93.50 E-value=3.7 Score=40.35 Aligned_cols=158 Identities=11% Similarity=0.035 Sum_probs=103.9
Q ss_pred eeh--HHHHHHHHHcC-----ChHHHHHHHHHHHh-CCCCCCH-HHHHHHHHHHhc---------cCCHHHHHHHHHHch
Q 010405 206 SAY--TSAIFGLAMNG-----HSIEAFELFENMKS-KGISPDS-ISYIAVLSACSH---------LGWVEKGFYYFHSMF 267 (511)
Q Consensus 206 ~~~--~~li~~~~~~g-----~~~~A~~~~~~m~~-~g~~p~~-~t~~~ll~~~~~---------~g~~~~a~~~~~~~~ 267 (511)
..| ...+.+..... ..+.|+.+|.+... +.+.|+- ..|..+..++.. ..+..+|.++-....
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 566 66666655421 34678889999873 2356653 334333322211 234556777777776
Q ss_pred hhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhH
Q 010405 268 DVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKPDNV-IWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRY 345 (511)
Q Consensus 268 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 345 (511)
+ --+-|+.....+..++.-.|+++.|..+|++. ...||.. .|....-.+.-.|+.++|.+.+++.+++.|.....-
T Consensus 332 e--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 D--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred h--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 6 12345777778888888888999999999998 5667644 565555667778999999999999999999754332
Q ss_pred H--HHHHHHHHcCCchHHHHHHH
Q 010405 346 I--LLSNIYVETLKGENAEEVRK 366 (511)
Q Consensus 346 ~--~l~~~~~~~g~~~~A~~~~~ 366 (511)
. ..++.|... ..++|.+++-
T Consensus 410 ~~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 410 VIKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHcCC-chhhhHHHHh
Confidence 2 334456655 4677777663
No 268
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.42 E-value=7.8 Score=37.36 Aligned_cols=35 Identities=3% Similarity=-0.089 Sum_probs=27.1
Q ss_pred cCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHc
Q 010405 321 HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVET 355 (511)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 355 (511)
.+..+.+...|+.+.+..|.....|..++..+.+.
T Consensus 271 ~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 271 SESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred cccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 37788889999999999888777777777665443
No 269
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.37 E-value=0.22 Score=28.96 Aligned_cols=32 Identities=25% Similarity=0.108 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC
Q 010405 310 IWGTLLGACRVHRNAEMGQRIGNMLIESDQNH 341 (511)
Q Consensus 310 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 341 (511)
.|..+...+...|++++|++.++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45555666677777777777777777776653
No 270
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.32 E-value=3.8 Score=35.76 Aligned_cols=160 Identities=12% Similarity=0.074 Sum_probs=81.3
Q ss_pred eehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHH
Q 010405 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL 285 (511)
Q Consensus 206 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 285 (511)
..||-+.--+...|+++.|.+.|+...+.+..- ..++..-.-++.-.|++..|.+-|...-+...-.|-...|.-+.
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y-~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-- 176 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-NYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-- 176 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhccCCcc-hHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH--
Confidence 456666666666777777777777666543221 12222222233345666666665554443222222222232222
Q ss_pred HHHcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC-------chhHHHHHHHHHHcCC
Q 010405 286 LGRAGLLEEAENFI-ASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH-------DGRYILLSNIYVETLK 357 (511)
Q Consensus 286 ~~~~g~~~~A~~~~-~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~ 357 (511)
.+.-++.+|..-+ ++.. ..|..-|...|-.+.- |... .+.+++++.....++ ..+|.-|+.-|...|+
T Consensus 177 -E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~ 252 (297)
T COG4785 177 -EQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGD 252 (297)
T ss_pred -HhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcccc
Confidence 1233455554433 3331 2344455544433221 1111 122333443322222 3688899999999999
Q ss_pred chHHHHHHHHHHhCC
Q 010405 358 GENAEEVRKTMRKRK 372 (511)
Q Consensus 358 ~~~A~~~~~~m~~~g 372 (511)
.++|..+|+.....+
T Consensus 253 ~~~A~~LfKLaiann 267 (297)
T COG4785 253 LDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998776543
No 271
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.30 E-value=8.6 Score=37.49 Aligned_cols=128 Identities=13% Similarity=0.077 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHchhhcC-CCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHH-HHHHHH
Q 010405 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHG-IKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKPDNVIW-GTLLGA 317 (511)
Q Consensus 241 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~ll~~ 317 (511)
..|...+.+..+..-++.|+.+|-++.+ .+ +.+++..+++++.-++ .|+..-|..+|+-- ..-||...| .-.+.-
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk-~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRK-EGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhc-cCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 4456666666677778888888888877 45 5677788888887554 56777788888753 333555544 344555
Q ss_pred HHhcCchhHHHHHHHHHhhcCCC--CchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 318 CRVHRNAEMGQRIGNMLIESDQN--HDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
+...++-+.|..+|+..++.-.+ -...|-.++.--..-|+...|..+-++|.+
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 66777778888888866552111 135677777777777888777777666654
No 272
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.94 E-value=8.7 Score=37.05 Aligned_cols=65 Identities=12% Similarity=0.064 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCC----CCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010405 307 DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQ----NHDGRYILLSNIYVETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 307 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 371 (511)
...+|..+...+++.|.++.|...+.++....+ ..+.....-+......|+..+|...++...+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456888899999999999999999999988542 24567777788999999999999999888763
No 273
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.89 E-value=5.4 Score=35.55 Aligned_cols=80 Identities=10% Similarity=0.110 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHccCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh--hHHHHHHHHHHHCC
Q 010405 44 SWNSMINGYVRNGEILEGLKLFDKMPQ---RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSL--VSWVVLISGFAQNG 118 (511)
Q Consensus 44 ~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~g 118 (511)
.|.-...+|....++++|...+.+..+ .|...|.+ ...++.|.-+.+++.+-+. ..|+--...|..+|
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhA-------AKayEqaamLake~~klsEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG 105 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 355555666667777777766655542 22222221 1223333334444433221 23445566677777
Q ss_pred ChhHHHHHHHHH
Q 010405 119 RPKEALALFREM 130 (511)
Q Consensus 119 ~~~~A~~~~~~m 130 (511)
.++-|-..+++.
T Consensus 106 spdtAAmaleKA 117 (308)
T KOG1585|consen 106 SPDTAAMALEKA 117 (308)
T ss_pred CcchHHHHHHHH
Confidence 776666555544
No 274
>PRK11619 lytic murein transglycosylase; Provisional
Probab=92.86 E-value=14 Score=38.88 Aligned_cols=97 Identities=11% Similarity=0.020 Sum_probs=53.0
Q ss_pred ChHHHHHHHccCCC-CCh-hHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCC
Q 010405 57 EILEGLKLFDKMPQ-RND-VSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD 134 (511)
Q Consensus 57 ~~~~A~~~~~~m~~-~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 134 (511)
.+++...++++-.. |-. ..-..-+..+.+.++++.....+..- ..+...-.....+....|+.++|.+..+.+-..|
T Consensus 81 ~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g 159 (644)
T PRK11619 81 PAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG 159 (644)
T ss_pred CHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 34555555555443 211 22233344555677777777733232 2344444556667777788777776666665544
Q ss_pred CCCCHhHHHHHHHHHHhcCCH
Q 010405 135 LEPNSAILVSLLSACAQLGAL 155 (511)
Q Consensus 135 ~~p~~~t~~~ll~~~~~~~~~ 155 (511)
...+.....++..+...|.+
T Consensus 160 -~~~p~~cd~l~~~~~~~g~l 179 (644)
T PRK11619 160 -KSLPNACDKLFSVWQQSGKQ 179 (644)
T ss_pred -CCCChHHHHHHHHHHHcCCC
Confidence 33445566666666655543
No 275
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.84 E-value=2.7 Score=33.41 Aligned_cols=53 Identities=21% Similarity=0.154 Sum_probs=25.0
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchh
Q 010405 215 LAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD 268 (511)
Q Consensus 215 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 268 (511)
++..|+.+.|++.|.+.+.. .+-+...|+.-..++.-.|+.++|.+-+++..+
T Consensus 53 laE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 33444555555555544432 112344455555555555555555555554444
No 276
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.62 E-value=3.5 Score=38.86 Aligned_cols=163 Identities=15% Similarity=0.155 Sum_probs=85.9
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHC-CCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CccHH
Q 010405 105 VSWVVLISGFAQNGRPKEALALFREMQSL-DLEP---NSAILVSLLSACAQLGALDYGNWVYSYIQKKCI-----KLDSI 175 (511)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p---~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~ 175 (511)
.+|-.+..++-+-.++.+++.+-..-... |..| -.....++..++...+.++++.+.|+.+.+... -....
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 35556666666666666666654433221 2222 112334456666777777777777777655321 12345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhc-------CCCCeee-hH-----HHHHHHHHcCChHHHHHHHHHHH----hCCCCC
Q 010405 176 LCAALIDMYAKCGSIDLAMQVFHSY-------GDKDVSA-YT-----SAIFGLAMNGHSIEAFELFENMK----SKGISP 238 (511)
Q Consensus 176 ~~~~li~~y~~~g~~~~A~~~~~~~-------~~~~~~~-~~-----~li~~~~~~g~~~~A~~~~~~m~----~~g~~p 238 (511)
++..|.+.|.+..++++|.-+..+. .-.|... |. .|.-++-..|....|.+.-++.. ..|-+|
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 7777788888888877765443322 1122221 11 23334555566555555554432 233222
Q ss_pred C-HHHHHHHHHHHhccCCHHHHHHHHHHch
Q 010405 239 D-SISYIAVLSACSHLGWVEKGFYYFHSMF 267 (511)
Q Consensus 239 ~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 267 (511)
. ......+.+.|...|+.|.|+.-|+...
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2 2234455556667777777766665543
No 277
>PRK09687 putative lyase; Provisional
Probab=92.54 E-value=9 Score=35.71 Aligned_cols=239 Identities=13% Similarity=0.054 Sum_probs=151.8
Q ss_pred HHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCChhHHHHHHHHHHhcCC----HHHHHHHHhhC--CCCChh
Q 010405 32 WVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGS----VDDACRVFNQM--PKRSLV 105 (511)
Q Consensus 32 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~----~~~A~~~~~~~--~~~~~~ 105 (511)
.+++.+..+|.......+.++...|..+-...+..-...+|...-...+.++++.|+ .+++...+..+ ..++..
T Consensus 27 ~L~~~L~d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~ 106 (280)
T PRK09687 27 ELFRLLDDHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSAC 106 (280)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHH
Confidence 344445677888888888888888875544444444456788888888888888886 35677777765 456665
Q ss_pred HHHHHHHHHHHCCCh-----hHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 010405 106 SWVVLISGFAQNGRP-----KEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180 (511)
Q Consensus 106 ~~~~li~~~~~~g~~-----~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 180 (511)
.-...+.++...+.. .++.+.+..... .++...-...+.++.+.++ +.+...+-.+.+. ++..+-...
T Consensus 107 VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A 179 (280)
T PRK09687 107 VRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWA 179 (280)
T ss_pred HHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHH
Confidence 555555555554321 234444444433 3466666777888888776 4566666666553 345566666
Q ss_pred HHHHHhcC-CHHHHHHHH-HhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHH
Q 010405 181 IDMYAKCG-SIDLAMQVF-HSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEK 258 (511)
Q Consensus 181 i~~y~~~g-~~~~A~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 258 (511)
+.++.+.+ +...+...+ ..+.++|...-...+.++.+.|+ ..|+..+-+..+.+ + .....+.++...|.. +
T Consensus 180 ~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~ 252 (280)
T PRK09687 180 AFALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-T 252 (280)
T ss_pred HHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-h
Confidence 66666543 133444444 44556777778888888888887 46777777776643 2 234677888888885 6
Q ss_pred HHHHHHHchhhcCCCCCHhHHHHHHHHHH
Q 010405 259 GFYYFHSMFDVHGIKPELDHYACMVDLLG 287 (511)
Q Consensus 259 a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 287 (511)
|...+..+.+ -.||..+-...+.++.
T Consensus 253 a~p~L~~l~~---~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 253 LLPVLDTLLY---KFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHHHh---hCCChhHHHHHHHHHh
Confidence 8888888775 2356666555555543
No 278
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.41 E-value=3.3 Score=34.76 Aligned_cols=119 Identities=22% Similarity=0.151 Sum_probs=65.6
Q ss_pred HhcCCHHHHHHHHhhCCCCChhHHHHH-----HHHHHHCCChhHHHHHHHHHHHCCCCCCHh-HHHHHH--HHHHhcCCH
Q 010405 84 VRFGSVDDACRVFNQMPKRSLVSWVVL-----ISGFAQNGRPKEALALFREMQSLDLEPNSA-ILVSLL--SACAQLGAL 155 (511)
Q Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll--~~~~~~~~~ 155 (511)
++.+..++|+.-|..+.+.+--.|-.| .....+.|+...|...|.+.-.....|-.. -..-|= -.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 455667777777777665443333332 334556677777777777765543333222 111111 123455666
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 010405 156 DYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202 (511)
Q Consensus 156 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 202 (511)
+....-.+-+-..+-+.....-.+|.-+-.+.|++.+|.+.|..+..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 66655555555444444455556666666667777777777666554
No 279
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.09 E-value=0.85 Score=41.89 Aligned_cols=61 Identities=20% Similarity=0.156 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 310 IWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 310 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
++..++..+...|+.+.+...++++...+|-+...|..++.+|.+.|+...|+..++.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4556667777778888888888888888888888888888888888888888888887765
No 280
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.80 E-value=0.58 Score=29.39 Aligned_cols=28 Identities=32% Similarity=0.672 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHC
Q 010405 106 SWVVLISGFAQNGRPKEALALFREMQSL 133 (511)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 133 (511)
+|..+...|.+.|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555566666666666666666666554
No 281
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.72 E-value=3 Score=42.02 Aligned_cols=149 Identities=17% Similarity=0.082 Sum_probs=100.2
Q ss_pred cCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 010405 24 CGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRS 103 (511)
Q Consensus 24 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 103 (511)
.|+++.|..++..++++ .-+.++.-+.+.|-.++|+++- +|+. .-.....+.|+++.|.++..+. .+
T Consensus 599 rrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s-----~D~d---~rFelal~lgrl~iA~~la~e~--~s 665 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELS-----TDPD---QRFELALKLGRLDIAFDLAVEA--NS 665 (794)
T ss_pred hccccccccccccCchh---hhhhHHhHhhhccchHhhhhcC-----CChh---hhhhhhhhcCcHHHHHHHHHhh--cc
Confidence 46777777766666533 3455666677778778777652 2221 1223445788888888876553 45
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 010405 104 LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDM 183 (511)
Q Consensus 104 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 183 (511)
..-|..|..+..+.|++..|.+.|.+... |..|+-.+...|+-+....+-....+.|.. |.-.-+
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~ 730 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLA 730 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHH
Confidence 67799999999999999999998877643 556777777788877666666666666532 223345
Q ss_pred HHhcCCHHHHHHHHHhc
Q 010405 184 YAKCGSIDLAMQVFHSY 200 (511)
Q Consensus 184 y~~~g~~~~A~~~~~~~ 200 (511)
|...|+++++.+++.+-
T Consensus 731 ~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 731 YFLSGDYEECLELLIST 747 (794)
T ss_pred HHHcCCHHHHHHHHHhc
Confidence 66778888888777654
No 282
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.60 E-value=0.37 Score=28.76 Aligned_cols=26 Identities=23% Similarity=0.066 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHH
Q 010405 344 RYILLSNIYVETLKGENAEEVRKTMR 369 (511)
Q Consensus 344 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 369 (511)
+|..|+++|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788899999999999999988743
No 283
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.54 E-value=0.47 Score=28.28 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHH
Q 010405 106 SWVVLISGFAQNGRPKEALALFREM 130 (511)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~~~~~m 130 (511)
+|+.|...|.+.|++++|+++|++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3566666677777777777766664
No 284
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=91.49 E-value=6.2 Score=31.58 Aligned_cols=57 Identities=12% Similarity=0.142 Sum_probs=26.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchh
Q 010405 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD 268 (511)
Q Consensus 211 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 268 (511)
.+..+...|+-++-.+++.++.. +-+|++.....+..||.+.|+..++.+++.++-+
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 34445555555555555555443 1244455555555566666666665555555554
No 285
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.21 E-value=1.4 Score=40.51 Aligned_cols=70 Identities=16% Similarity=0.380 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHHCCChhHHHHHHHHHHH-----CCCCCCHhHHHHH
Q 010405 76 WNSILGGLVRFGSVDDACRVFNQMPKR---SLVSWVVLISGFAQNGRPKEALALFREMQS-----LDLEPNSAILVSL 145 (511)
Q Consensus 76 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~t~~~l 145 (511)
+..++..+..+|+.+.+...++++... +...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 445555666666666666666666542 445666667777777777666666666644 3555554444333
No 286
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.12 E-value=8.5 Score=32.48 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 010405 278 HYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNML 334 (511)
Q Consensus 278 ~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 334 (511)
.+..+++.+...|++-+|.++.+..+.. +......++.+....+|...--.+++-.
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~~~~-~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQYHKV-DSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHcCCc-ccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4555667777777777777777664211 1222234455555555444443343333
No 287
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=91.01 E-value=3.7 Score=30.92 Aligned_cols=60 Identities=17% Similarity=0.249 Sum_probs=42.3
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHH
Q 010405 80 LGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142 (511)
Q Consensus 80 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 142 (511)
++.+...|++++|..+.+.+..||...|-+|-.. +.|..+++..-+.+|..+| .|...+|
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 3456678888888888888888888888776554 6677777777777777666 4444443
No 288
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.69 E-value=1 Score=38.65 Aligned_cols=89 Identities=19% Similarity=0.094 Sum_probs=68.3
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCCC------HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcC
Q 010405 284 DLLGRAGLLEEAENFIASM-PMKPD------NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETL 356 (511)
Q Consensus 284 ~~~~~~g~~~~A~~~~~~~-~~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 356 (511)
.-+.+.|++++|..-|... ..-|. .+.|..-..++.+.+.++.|+.-..++++++|....+...-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 3456678888888777665 21221 2344444466788899999999999999999988888888888999999
Q ss_pred CchHHHHHHHHHHhCC
Q 010405 357 KGENAEEVRKTMRKRK 372 (511)
Q Consensus 357 ~~~~A~~~~~~m~~~g 372 (511)
++++|++-++.+.+..
T Consensus 183 k~eealeDyKki~E~d 198 (271)
T KOG4234|consen 183 KYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9999999999888744
No 289
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.64 E-value=12 Score=33.30 Aligned_cols=63 Identities=10% Similarity=-0.024 Sum_probs=35.9
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHhC-----CCCCCHHHHHHHHHH---HHhcCchhHHHHHHHHHhhcCCCC
Q 010405 279 YACMVDLLGRA-GLLEEAENFIASM-----PMKPDNVIWGTLLGA---CRVHRNAEMGQRIGNMLIESDQNH 341 (511)
Q Consensus 279 ~~~li~~~~~~-g~~~~A~~~~~~~-----~~~p~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~p~~ 341 (511)
+-.+...|-.- .++++|+..|+.. +.+.+...-..++.+ -...+++.+|+++|+++.....++
T Consensus 116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33444555443 5666666666655 122222233334433 356688999999999988854444
No 290
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.45 E-value=7.6 Score=32.74 Aligned_cols=124 Identities=15% Similarity=0.154 Sum_probs=66.1
Q ss_pred CCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCChhHHHHHHHHHHhc--CCHHHHHHHHhhCCCCChhHHHHHHHHH
Q 010405 37 SDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRF--GSVDDACRVFNQMPKRSLVSWVVLISGF 114 (511)
Q Consensus 37 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~li~~~ 114 (511)
-..++...|..++..+.+.|++..-.+++.--.-+|.......+-.+... .-..-|.+.+.++. ..+..++..+
T Consensus 24 ~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~----~~~~~iievL 99 (167)
T PF07035_consen 24 NIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG----TAYEEIIEVL 99 (167)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----hhHHHHHHHH
Confidence 34456667777777777777776666665544333333222222111111 11334445555543 2344566677
Q ss_pred HHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010405 115 AQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKK 168 (511)
Q Consensus 115 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 168 (511)
...|++-+|+.+.+..... +......++.+..+.++...-..+++...+.
T Consensus 100 L~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 100 LSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred HhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7788888887776654221 2222344566666666666655565555543
No 291
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.41 E-value=13 Score=33.52 Aligned_cols=56 Identities=9% Similarity=-0.030 Sum_probs=44.4
Q ss_pred HHHHHhcCchhHHHHHHHHHhhcCCCCc---hhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 315 LGACRVHRNAEMGQRIGNMLIESDQNHD---GRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 315 l~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
..-|.+.|.+..|..-++.+++.-|+.+ ..+..+..+|...|..++|.+.-+-+..
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 3558889999999999999999765544 3556778889999999999988877654
No 292
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.30 E-value=9.6 Score=31.76 Aligned_cols=110 Identities=16% Similarity=0.115 Sum_probs=64.2
Q ss_pred HHhccCCHHHHHHHHHHchhhcCCCCCH-hHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCchhH
Q 010405 249 ACSHLGWVEKGFYYFHSMFDVHGIKPEL-DHYACMVDLLGRAGLLEEAENFIASMP-MKPDNVIWGTLLGACRVHRNAEM 326 (511)
Q Consensus 249 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~ 326 (511)
.-...++.+.+..++..+.- +.|.. ..-..-...+.+.|++.+|..+|+++. ..|....-.+|+..|....+-..
T Consensus 19 ~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 34566788888888888865 45552 333334455678899999999999883 33555556677776655544344
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHH
Q 010405 327 GQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEE 363 (511)
Q Consensus 327 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 363 (511)
=.....++.+..++ +.+ ..|+..+....+...|..
T Consensus 96 Wr~~A~evle~~~d-~~a-~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 96 WRRYADEVLESGAD-PDA-RALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHHHhcCCC-hHH-HHHHHHHHHhccccchhh
Confidence 44445555555542 222 234444444444444433
No 293
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.29 E-value=6.4 Score=33.75 Aligned_cols=15 Identities=13% Similarity=0.118 Sum_probs=9.6
Q ss_pred HcCCHHHHHHHHHhC
Q 010405 288 RAGLLEEAENFIASM 302 (511)
Q Consensus 288 ~~g~~~~A~~~~~~~ 302 (511)
..+++.+|-+.|-..
T Consensus 125 ~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 125 AQRDFKEAAELFLDS 139 (177)
T ss_pred HhchHHHHHHHHHcc
Confidence 356777777766555
No 294
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.17 E-value=4.7 Score=34.58 Aligned_cols=63 Identities=11% Similarity=0.160 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH--hHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010405 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS--AILVSLLSACAQLGALDYGNWVYSYIQK 167 (511)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 167 (511)
..+..+...|.+.|+.++|++.|.++......|.. ..+..++..+...+++..+.....++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 46778888888888888888888888776444433 4556777778888888888877766654
No 295
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.75 E-value=1.7 Score=36.15 Aligned_cols=52 Identities=4% Similarity=-0.056 Sum_probs=27.8
Q ss_pred HhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 319 RVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
...++.+.++.++..+.-+.|..+..-..-+..+...|+|++|.++++.+.+
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 3444555555555555555555555555555555555555555555555543
No 296
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.24 E-value=0.74 Score=26.72 Aligned_cols=30 Identities=10% Similarity=-0.079 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHhhcCC
Q 010405 310 IWGTLLGACRVHRNAEMGQRIGNMLIESDQ 339 (511)
Q Consensus 310 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 339 (511)
+|..+...+...|+.++|...+++..++.|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455555666677777777777777776666
No 297
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.04 E-value=1.7 Score=35.49 Aligned_cols=53 Identities=8% Similarity=-0.027 Sum_probs=39.0
Q ss_pred hcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 320 VHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
..++.++++.++..+.-+.|..+..-..-+..+...|+|++|.++++...+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 46777777777777777777777766677777777777777777777776544
No 298
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=88.76 E-value=30 Score=35.24 Aligned_cols=299 Identities=8% Similarity=0.050 Sum_probs=179.5
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChh-HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 010405 72 NDVSWNSILGGLVRFGSVDDACRVFNQMPK--RSLV-SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148 (511)
Q Consensus 72 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 148 (511)
+-..|+.||.--....+.+.+..+++.+.. |... -|-....-=.+.|..+.+.++|++-++. ++.+...|...+.-
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAF 122 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHH
Confidence 344566666544444555667777777653 4332 4566666667889999999999998764 66666667666655
Q ss_pred HH-hcCCHHHHHHHHHHHHHc-CCC-ccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHH---c----
Q 010405 149 CA-QLGALDYGNWVYSYIQKK-CIK-LDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAM---N---- 218 (511)
Q Consensus 149 ~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~---~---- 218 (511)
+. ..|+.+.....|+.++.. |.. .....|...+..-..++++.....+|+++.+-....++..-.-|.+ .
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~ 202 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEK 202 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChh
Confidence 43 457788888888888774 322 2355777888887888999999999999887555555555444433 2
Q ss_pred --CChHHHHHHHHHHHhC----CCCCCHHHHHHHHHHH-hccCCHHHH------------------------HHHHHHch
Q 010405 219 --GHSIEAFELFENMKSK----GISPDSISYIAVLSAC-SHLGWVEKG------------------------FYYFHSMF 267 (511)
Q Consensus 219 --g~~~~A~~~~~~m~~~----g~~p~~~t~~~ll~~~-~~~g~~~~a------------------------~~~~~~~~ 267 (511)
...+++.++-...... ...+.......-+.-- ...+..+++ +..|+.-.
T Consensus 203 ~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~I 282 (577)
T KOG1258|consen 203 ILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGI 282 (577)
T ss_pred hhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhc
Confidence 2344444444333321 0011111111111110 011111111 11122111
Q ss_pred hh--cCCC----CCHhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhh-cC
Q 010405 268 DV--HGIK----PELDHYACMVDLLGRAGLLEEAENFIASM--PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIE-SD 338 (511)
Q Consensus 268 ~~--~~~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~ 338 (511)
+. +.++ ++..+|..-++--.+.|+.+.+.-+|++. +...-...|--.+.-....|+.+.|..++.+..+ ..
T Consensus 283 krpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~ 362 (577)
T KOG1258|consen 283 KRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHV 362 (577)
T ss_pred cccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC
Confidence 10 0112 23567777788888889999998888886 3333344555555555555888888888888877 45
Q ss_pred CCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010405 339 QNHDGRYILLSNIYVETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 339 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 371 (511)
|..+.+...-+...-..|+++.|..+++...+.
T Consensus 363 k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e 395 (577)
T KOG1258|consen 363 KKTPIIHLLEARFEESNGNFDDAKVILQRIESE 395 (577)
T ss_pred CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh
Confidence 555555555555666778888888888888754
No 299
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.64 E-value=19 Score=32.75 Aligned_cols=243 Identities=16% Similarity=0.188 Sum_probs=135.1
Q ss_pred CCHHHHHHHHhhCCC----C---ChhHHHHHHHHHHHCCChhHHHHHHHHHHHC---CC--CCCHhHHHHHHHHHHhcCC
Q 010405 87 GSVDDACRVFNQMPK----R---SLVSWVVLISGFAQNGRPKEALALFREMQSL---DL--EPNSAILVSLLSACAQLGA 154 (511)
Q Consensus 87 g~~~~A~~~~~~~~~----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~--~p~~~t~~~ll~~~~~~~~ 154 (511)
...++|+.-|++..+ + .-.+.-.+|..+.+.|++++.+..|.+|+.- .+ .-+....++++.-.+...+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 355666666655432 1 2234456677777777777777777776431 11 1234556667666666666
Q ss_pred HHHHHHHHHHHHHc-----CCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--------CC-------eeehHHHHHH
Q 010405 155 LDYGNWVYSYIQKK-----CIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD--------KD-------VSAYTSAIFG 214 (511)
Q Consensus 155 ~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~~-------~~~~~~li~~ 214 (511)
.+.-...++.-++. +-...-.+-+.|...|...|.+.+..+++.++.. .| ...|..-|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 65555555443321 1111222445577778888888777777776642 11 1346666777
Q ss_pred HHHcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHh-----ccCCHHHHHHHHHHchhhcCC--CCCH---hHHHHHH
Q 010405 215 LAMNGHSIEAFELFENMKSK-GISPDSISYIAVLSACS-----HLGWVEKGFYYFHSMFDVHGI--KPEL---DHYACMV 283 (511)
Q Consensus 215 ~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~-----~~g~~~~a~~~~~~~~~~~~~--~p~~---~~~~~li 283 (511)
|....+-.....+|++.+.. .-.|.+... .+++-|. +.|.+++|..-|-++-+.+.- .|.. --|..|.
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 88777777777788776542 234554444 3555553 457888776544444332322 2222 2356666
Q ss_pred HHHHHcCCHHHHHHHHHh--C-C--CCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhh
Q 010405 284 DLLGRAGLLEEAENFIAS--M-P--MKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIE 336 (511)
Q Consensus 284 ~~~~~~g~~~~A~~~~~~--~-~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (511)
.++.+.|- .-|+. . | ..|.....+.|+.+|..+ +..+-+++++.-..
T Consensus 280 NMLmkS~i-----NPFDsQEAKPyKNdPEIlAMTnlv~aYQ~N-dI~eFE~Il~~~~~ 331 (440)
T KOG1464|consen 280 NMLMKSGI-----NPFDSQEAKPYKNDPEILAMTNLVAAYQNN-DIIEFERILKSNRS 331 (440)
T ss_pred HHHHHcCC-----CCCcccccCCCCCCHHHHHHHHHHHHHhcc-cHHHHHHHHHhhhc
Confidence 77766651 11211 1 2 335566778888888654 45555555544443
No 300
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=88.63 E-value=0.8 Score=26.89 Aligned_cols=31 Identities=13% Similarity=0.128 Sum_probs=19.8
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 010405 163 SYIQKKCIKLDSILCAALIDMYAKCGSIDLAM 194 (511)
Q Consensus 163 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 194 (511)
++.++.. |-+..+|+.|...|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3444443 446667777777777777777765
No 301
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.01 E-value=40 Score=35.85 Aligned_cols=177 Identities=15% Similarity=0.064 Sum_probs=105.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCChh---HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 010405 75 SWNSILGGLVRFGSVDDACRVFNQMPKRSLV---SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ 151 (511)
Q Consensus 75 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 151 (511)
....-+++..+...++.|..+-+.-..+... ....-.+-+.+.|++++|...|-+-... +.|. .++.-+..
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLd 409 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLD 409 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcC
Confidence 3455677778888888888887664432111 2223344566789999999988766533 2332 24445555
Q ss_pred cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCee-ehHHHHHHHHHcCChHHHHHHHHH
Q 010405 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVS-AYTSAIFGLAMNGHSIEAFELFEN 230 (511)
Q Consensus 152 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~ 230 (511)
.....+-..+++.+.+.|+. +...-+.|+.+|.|.++.++-.+..+...+-... -....+..+.+.+-.++|.-+-.+
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 55666666778888888865 4445567899999999999888877766521111 133445555555555555554433
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHc
Q 010405 231 MKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266 (511)
Q Consensus 231 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 266 (511)
... +......+ +-..+++++|.+++..+
T Consensus 489 ~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 489 FKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred hcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 221 22222222 34456677776666655
No 302
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.60 E-value=42 Score=35.68 Aligned_cols=75 Identities=11% Similarity=0.044 Sum_probs=44.3
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhh-cCCCCchhHHHHHHHHHHcCC
Q 010405 282 MVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIE-SDQNHDGRYILLSNIYVETLK 357 (511)
Q Consensus 282 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~ 357 (511)
++..+.+..+++.+..+.+..+.. ++..|..++..+.+.+..+.-.+...++++ +...+...-..+++++++.+.
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn~~ 786 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQILAKNGT 786 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHHHHhcCCc
Confidence 455566667777777777777533 677787788877777766655555555544 222222233345555555543
No 303
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.87 E-value=4.6 Score=30.55 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHH
Q 010405 223 EAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVD 284 (511)
Q Consensus 223 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 284 (511)
+..+-+..+....+.|+.....+.|.||.+.+++..|.++|+.++.+.+.. ...|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 556666667777888999999999999999999999999999998755433 336776664
No 304
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.72 E-value=1.7 Score=25.20 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHH
Q 010405 106 SWVVLISGFAQNGRPKEALALFREMQS 132 (511)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 132 (511)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 456666666666666666666666655
No 305
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.37 E-value=4.9 Score=30.09 Aligned_cols=62 Identities=16% Similarity=0.216 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHH
Q 010405 221 SIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVD 284 (511)
Q Consensus 221 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 284 (511)
.-++.+-++.+....+.|+.....+.++||.+.+++..|.++|+..+.+.|. +...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 3366666777777788899999999999999999999999999988753432 4446666654
No 306
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.17 E-value=17 Score=36.97 Aligned_cols=150 Identities=18% Similarity=0.128 Sum_probs=80.9
Q ss_pred hcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 010405 85 RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSY 164 (511)
Q Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 164 (511)
-.|+++.|-.++..+++ ..-+.++.-+-++|-.++|+++ .+|...- .....+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCch---hhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHh
Confidence 35667776666665553 2334455566666767766654 2332221 1223455666666665443
Q ss_pred HHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 010405 165 IQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYI 244 (511)
Q Consensus 165 ~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 244 (511)
.. +..-|..|.++..+.|++..|.+.|.+.. -|..|+-.+...|+.+....+-....+.|.. |. .|
T Consensus 663 ~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~-----d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N~-AF- 728 (794)
T KOG0276|consen 663 AN------SEVKWRQLGDAALSAGELPLASECFLRAR-----DLGSLLLLYTSSGNAEGLAVLASLAKKQGKN-NL-AF- 728 (794)
T ss_pred hc------chHHHHHHHHHHhhcccchhHHHHHHhhc-----chhhhhhhhhhcCChhHHHHHHHHHHhhccc-ch-HH-
Confidence 32 44567777777777777777777776543 2455555566666655444444444444421 21 11
Q ss_pred HHHHHHhccCCHHHHHHHHHHc
Q 010405 245 AVLSACSHLGWVEKGFYYFHSM 266 (511)
Q Consensus 245 ~ll~~~~~~g~~~~a~~~~~~~ 266 (511)
-++...|+++++.+++.+-
T Consensus 729 ---~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 729 ---LAYFLSGDYEECLELLIST 747 (794)
T ss_pred ---HHHHHcCCHHHHHHHHHhc
Confidence 1334456666666655443
No 307
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.89 E-value=8.3 Score=33.46 Aligned_cols=78 Identities=13% Similarity=0.093 Sum_probs=52.3
Q ss_pred HHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCccHHHHHHHHHHHHhcCCHH
Q 010405 115 AQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKK---CIKLDSILCAALIDMYAKCGSID 191 (511)
Q Consensus 115 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~y~~~g~~~ 191 (511)
.+.|+ +.|+..|-++...+.--++.....|...|. ..+.+++++++-.+.+. +-.+|+..+.+|++.|.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34443 567777777777665545555555554444 67788888888777663 22567788888888888888888
Q ss_pred HHH
Q 010405 192 LAM 194 (511)
Q Consensus 192 ~A~ 194 (511)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 774
No 308
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.80 E-value=1.2 Score=24.27 Aligned_cols=24 Identities=13% Similarity=0.160 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHH
Q 010405 343 GRYILLSNIYVETLKGENAEEVRK 366 (511)
Q Consensus 343 ~~~~~l~~~~~~~g~~~~A~~~~~ 366 (511)
.....|+.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 355678888888888888888765
No 309
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.76 E-value=21 Score=30.25 Aligned_cols=118 Identities=15% Similarity=0.087 Sum_probs=48.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCccHHHH-HHHHHHHHhcCCHHHHHHHHHhcCCCCeee--hH---HH--HHHHHHcCChH
Q 010405 151 QLGALDYGNWVYSYIQKKCIKLDSILC-AALIDMYAKCGSIDLAMQVFHSYGDKDVSA--YT---SA--IFGLAMNGHSI 222 (511)
Q Consensus 151 ~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~y~~~g~~~~A~~~~~~~~~~~~~~--~~---~l--i~~~~~~g~~~ 222 (511)
+.+..++|...|..+.+.|...-+..- --........|+...|...|+++...+... .. .| .-.+..+|-++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 444455555555555555433222211 111222344555555555555544321111 10 01 11123345555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchh
Q 010405 223 EAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD 268 (511)
Q Consensus 223 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 268 (511)
+.....+.+...+-+.-...-..|.-+-.+.|++..|.++|..+..
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 5444444433332222222233344444455555555555555554
No 310
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.44 E-value=0.76 Score=37.84 Aligned_cols=84 Identities=15% Similarity=0.126 Sum_probs=45.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcC
Q 010405 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAG 290 (511)
Q Consensus 211 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 290 (511)
++..+.+.+.+.....+++.+...+..-+....+.++..|++.+..+....+++... ...+ ..+++.+.+.|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~---~yd~-----~~~~~~c~~~~ 84 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN---NYDL-----DKALRLCEKHG 84 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS---SS-C-----THHHHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc---ccCH-----HHHHHHHHhcc
Confidence 445555566666666667666665544456666667777777666566555554221 1111 23444455555
Q ss_pred CHHHHHHHHHhC
Q 010405 291 LLEEAENFIASM 302 (511)
Q Consensus 291 ~~~~A~~~~~~~ 302 (511)
.+++|.-++.++
T Consensus 85 l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 85 LYEEAVYLYSKL 96 (143)
T ss_dssp SHHHHHHHHHCC
T ss_pred hHHHHHHHHHHc
Confidence 555555555554
No 311
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=85.35 E-value=9.3 Score=28.86 Aligned_cols=86 Identities=10% Similarity=0.100 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhC
Q 010405 155 LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK 234 (511)
Q Consensus 155 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 234 (511)
-++|.-|-+.+...+-. ...+--+-+..+...|++++|..+.+.+.-||..+|-++-. .+.|..+++..-+.+|..+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 35555555555444311 22333333455667889999988888888888888877654 3567777777777777766
Q ss_pred CCCCCHHHHH
Q 010405 235 GISPDSISYI 244 (511)
Q Consensus 235 g~~p~~~t~~ 244 (511)
| .|...+|.
T Consensus 98 g-~p~lq~Fa 106 (115)
T TIGR02508 98 G-DPRLQTFV 106 (115)
T ss_pred C-CHHHHHHH
Confidence 5 44555543
No 312
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=85.29 E-value=32 Score=32.03 Aligned_cols=16 Identities=13% Similarity=-0.105 Sum_probs=9.6
Q ss_pred HHHHcCCchHHHHHHH
Q 010405 351 IYVETLKGENAEEVRK 366 (511)
Q Consensus 351 ~~~~~g~~~~A~~~~~ 366 (511)
.+.+.++|++|.+.++
T Consensus 255 ~~~~~k~y~~A~~w~~ 270 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYE 270 (278)
T ss_pred HHHhhcCHHHHHHHHH
Confidence 3455666666666665
No 313
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=85.17 E-value=2.9 Score=39.03 Aligned_cols=89 Identities=8% Similarity=-0.005 Sum_probs=41.5
Q ss_pred HhccCCHHHHHHHHHHchhhcCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCchhH
Q 010405 250 CSHLGWVEKGFYYFHSMFDVHGIKP-ELDHYACMVDLLGRAGLLEEAENFIASM-PMK-PDNVIWGTLLGACRVHRNAEM 326 (511)
Q Consensus 250 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~ 326 (511)
|.++|.+++|+..|..... +.| ++.++..-..+|.+..++..|+.-.+.. .+. .-...|..-..+-...|+..+
T Consensus 107 yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 4445555555555554443 223 4444544555555555555444433332 110 011223333333344455666
Q ss_pred HHHHHHHHhhcCCCC
Q 010405 327 GQRIGNMLIESDQNH 341 (511)
Q Consensus 327 a~~~~~~~~~~~p~~ 341 (511)
|.+-++.++++.|.+
T Consensus 184 AKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 184 AKKDCETVLALEPKN 198 (536)
T ss_pred HHHhHHHHHhhCccc
Confidence 666666666666654
No 314
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.03 E-value=2.1 Score=26.06 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=9.2
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHh
Q 010405 312 GTLLGACRVHRNAEMGQRIGNMLI 335 (511)
Q Consensus 312 ~~ll~~~~~~g~~~~a~~~~~~~~ 335 (511)
+.|...|...|++++|+.+++++.
T Consensus 6 ~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 6 NNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcchhhHHHHHHH
Confidence 333333444444444444444433
No 315
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=84.78 E-value=1.7 Score=25.00 Aligned_cols=28 Identities=18% Similarity=0.108 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 343 GRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 343 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
..+..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4678899999999999999999998765
No 316
>PRK12798 chemotaxis protein; Reviewed
Probab=84.78 E-value=41 Score=32.85 Aligned_cols=180 Identities=14% Similarity=0.144 Sum_probs=115.9
Q ss_pred cCCHHHHHHHHHhcCCC----CeeehHHHHHHHHH-cCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCCHH
Q 010405 187 CGSIDLAMQVFHSYGDK----DVSAYTSAIFGLAM-NGHSIEAFELFENMKSKGISPDS----ISYIAVLSACSHLGWVE 257 (511)
Q Consensus 187 ~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~ 257 (511)
.|+.++|.+.+..+... ....|-+|+.+-.. ..++.+|+++|++..-. -|.. ....--+....+.|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 69999999999988753 44567777776554 56889999999998653 3433 34444455678889999
Q ss_pred HHHHHHHHchhhcCCCCCHhHHH-HHHHHHHHc---CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHH
Q 010405 258 KGFYYFHSMFDVHGIKPELDHYA-CMVDLLGRA---GLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNM 333 (511)
Q Consensus 258 ~a~~~~~~~~~~~~~~p~~~~~~-~li~~~~~~---g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 333 (511)
++..+-......+.-.|-...|. .++.++.+. ...+.-..++..|.-.--...|..+...-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 98877777666555555443332 233334333 33455556666664222345788888888999999999999999
Q ss_pred HhhcCCCCchhHHHHHHHHHHc-----CCchHHHHHHHHHH
Q 010405 334 LIESDQNHDGRYILLSNIYVET-----LKGENAEEVRKTMR 369 (511)
Q Consensus 334 ~~~~~p~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~m~ 369 (511)
+..+...+ ..-...+..|... .+.++|.+.+..+.
T Consensus 283 A~~L~~~~-~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~ 322 (421)
T PRK12798 283 ALKLADPD-SADAARARLYRGAALVASDDAESALEELSQID 322 (421)
T ss_pred HHHhccCC-CcchHHHHHHHHHHccCcccHHHHHHHHhcCC
Confidence 99965332 3333344444332 34566666555443
No 317
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=84.56 E-value=0.48 Score=39.02 Aligned_cols=83 Identities=14% Similarity=0.123 Sum_probs=46.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHH
Q 010405 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEA 224 (511)
Q Consensus 145 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 224 (511)
++..+.+.+.++....+++.+.+.+...+....+.++..|++.++.++..++++.... .-...++..+-+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 3445555666677777777777665555677777777777777666666665552221 3333444444444555454
Q ss_pred HHHHHH
Q 010405 225 FELFEN 230 (511)
Q Consensus 225 ~~~~~~ 230 (511)
.-++.+
T Consensus 90 ~~Ly~~ 95 (143)
T PF00637_consen 90 VYLYSK 95 (143)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 444443
No 318
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=84.40 E-value=63 Score=34.72 Aligned_cols=193 Identities=13% Similarity=0.058 Sum_probs=104.0
Q ss_pred HhcCCHHHHHHHHHhcC----CCCee-------ehHHHHHHH-HHcCChHHHHHHHHHHHhC----CCCCCHHHHHHHHH
Q 010405 185 AKCGSIDLAMQVFHSYG----DKDVS-------AYTSAIFGL-AMNGHSIEAFELFENMKSK----GISPDSISYIAVLS 248 (511)
Q Consensus 185 ~~~g~~~~A~~~~~~~~----~~~~~-------~~~~li~~~-~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~ll~ 248 (511)
....++++|..+..+.. .++.. .|+++-... ...|++++|+++.+..... -..+..+.+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34678888887776543 33222 355554332 3467888888888877653 12234455566666
Q ss_pred HHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHH-----HHHHHHcCCHH--HHHHHHHhC-----CCCC----CHHHHH
Q 010405 249 ACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACM-----VDLLGRAGLLE--EAENFIASM-----PMKP----DNVIWG 312 (511)
Q Consensus 249 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l-----i~~~~~~g~~~--~A~~~~~~~-----~~~p----~~~~~~ 312 (511)
+..-.|++++|..+.....+. .-.-+...+... ...+..+|... +.+..|... +.+| -..+..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 777788999988887766652 112233332222 23345566322 222233222 1122 233444
Q ss_pred HHHHHHHhcCchhHHHHHHHHHhh----cCCCCch---hHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeE
Q 010405 313 TLLGACRVHRNAEMGQRIGNMLIE----SDQNHDG---RYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381 (511)
Q Consensus 313 ~ll~~~~~~g~~~~a~~~~~~~~~----~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 381 (511)
.++.++.+ .+.+..-.....+ ..|..-. .+..|+..+...|+.++|...++++......+.+...|
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~ 657 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDY 657 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchH
Confidence 45555433 3333333333333 2332222 22367888888999999999988887655544344333
No 319
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.67 E-value=2.8 Score=25.40 Aligned_cols=27 Identities=30% Similarity=0.393 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHH
Q 010405 105 VSWVVLISGFAQNGRPKEALALFREMQ 131 (511)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 131 (511)
.+++.|...|...|++++|+.++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 356666667777777777777666654
No 320
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=83.22 E-value=2.7 Score=39.19 Aligned_cols=86 Identities=14% Similarity=-0.008 Sum_probs=65.8
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchH
Q 010405 283 VDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGEN 360 (511)
Q Consensus 283 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 360 (511)
..-|.++|.+++|++.|... ...| |++++..-..+|.+...+..|+.-...++.++..-..+|..-+.+-...|+..+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 34688999999999999764 6677 888888888999999999999998888888766555566665656566667776
Q ss_pred HHHHHHHH
Q 010405 361 AEEVRKTM 368 (511)
Q Consensus 361 A~~~~~~m 368 (511)
|.+-.+..
T Consensus 184 AKkD~E~v 191 (536)
T KOG4648|consen 184 AKKDCETV 191 (536)
T ss_pred HHHhHHHH
Confidence 66555443
No 321
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=83.22 E-value=52 Score=32.86 Aligned_cols=103 Identities=15% Similarity=0.128 Sum_probs=72.0
Q ss_pred CCCCHHHHH-HHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHH---HHcCCHHHHHHHHHhC--CCCCCHH
Q 010405 236 ISPDSISYI-AVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLL---GRAGLLEEAENFIASM--PMKPDNV 309 (511)
Q Consensus 236 ~~p~~~t~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~---~~~g~~~~A~~~~~~~--~~~p~~~ 309 (511)
..|+..|+. .++.-+-..|-...|...+..+.. -.+|+...|..+++.- ..+| +..+..+++.| ..-.|+.
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~ 531 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSD 531 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChH
Confidence 456666654 456666777888888888888876 3456677777777643 2334 67777777776 2226788
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHhh-cCCCC
Q 010405 310 IWGTLLGACRVHRNAEMGQRIGNMLIE-SDQNH 341 (511)
Q Consensus 310 ~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~ 341 (511)
.|...+.--..+|..+.+-.++.++.+ ++|..
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~~ 564 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWRAMKTLQGES 564 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHHHHHhhChhh
Confidence 888888887888999988888888777 56643
No 322
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.08 E-value=7.7 Score=35.95 Aligned_cols=100 Identities=14% Similarity=0.121 Sum_probs=68.3
Q ss_pred cCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC-CCe-----eehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH
Q 010405 168 KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD-KDV-----SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI 241 (511)
Q Consensus 168 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 241 (511)
.|.+....+...++..-....++++++..+-++.. ++. .+-.+.+. ++..=++++++.++..=.+.|+-||..
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~ir-lllky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHH-HHHccChHHHHHHHhCcchhccccchh
Confidence 34455555666666666667788888887766653 211 11111222 223346778888888888889999999
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHchh
Q 010405 242 SYIAVLSACSHLGWVEKGFYYFHSMFD 268 (511)
Q Consensus 242 t~~~ll~~~~~~g~~~~a~~~~~~~~~ 268 (511)
+++.+++.+.+.++..+|.++...|..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 999999999999999888887777665
No 323
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=83.06 E-value=11 Score=37.08 Aligned_cols=125 Identities=9% Similarity=0.011 Sum_probs=76.7
Q ss_pred ccCCHHHHHH-HHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCchhHHH
Q 010405 252 HLGWVEKGFY-YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM--PMKPDNVIWGTLLGACRVHRNAEMGQ 328 (511)
Q Consensus 252 ~~g~~~~a~~-~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~ 328 (511)
..|++-.|-+ ++..+.. +.-.|+ +.......+...|+++.+.+.+... .+.....+...++......|++++|.
T Consensus 301 ~~gd~~aas~~~~~~lr~-~~~~p~--~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRN-QQQDPV--LIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHh-CCCCch--hhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 3466655544 4444433 333343 3333344566778888888877665 12234556677778888888888888
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCce
Q 010405 329 RIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGC 379 (511)
Q Consensus 329 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 379 (511)
...+.++..+-.++......+..--..|-+|++.-.|++....+.+.+.++
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~ 428 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGW 428 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccc
Confidence 888888875555555444444444556778888888888776554444443
No 324
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.67 E-value=12 Score=30.69 Aligned_cols=66 Identities=14% Similarity=0.035 Sum_probs=36.8
Q ss_pred hccCCHHHHHHHHHHchhhcCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 010405 251 SHLGWVEKGFYYFHSMFDVHGIKPE-LDHYACMVDLLGRAGLLEEAENFIASMPMKP-DNVIWGTLLGACR 319 (511)
Q Consensus 251 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~ 319 (511)
...++.+++..++..|.- +.|+ ...-..-.-.+...|++++|..+|++....+ ....-.+|+..|.
T Consensus 21 L~~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL 88 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRV---LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCL 88 (153)
T ss_pred HhcCCHHHHHHHHHHHHH---hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence 346777777777777754 4444 2222233344566777888888887774332 3333334444443
No 325
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=82.57 E-value=34 Score=30.19 Aligned_cols=176 Identities=15% Similarity=0.028 Sum_probs=97.3
Q ss_pred cCCHHHHHHHHhhCC--CCC-hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 010405 86 FGSVDDACRVFNQMP--KRS-LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVY 162 (511)
Q Consensus 86 ~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 162 (511)
.|-+.-|+--|.+.. .|+ +..||-|.--+...|+++.|.+.|+...+.+..- ..+...-.-++.-.|++..|.+-+
T Consensus 78 lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y-~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 78 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-NYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc-hHHHhccceeeeecCchHhhHHHH
Confidence 344444444444432 343 3578888888888999999999998888764322 222222223334457788777766
Q ss_pred HHHHHcC-CCccHHHHHHHHHHHHhcCCHHHHHH-HHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC-
Q 010405 163 SYIQKKC-IKLDSILCAALIDMYAKCGSIDLAMQ-VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD- 239 (511)
Q Consensus 163 ~~~~~~~-~~~~~~~~~~li~~y~~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~- 239 (511)
.+.-+.. -.|-...|--+.. ..-++.+|.. +.++....|..-|..-|-.|.-..-.++ .++++.... -.-+
T Consensus 157 ~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e--~l~~~~~a~-a~~n~ 230 (297)
T COG4785 157 LAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEE--TLMERLKAD-ATDNT 230 (297)
T ss_pred HHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHH--HHHHHHHhh-ccchH
Confidence 5555543 2232334433332 2334555543 4445555565666655555443222222 223333221 1111
Q ss_pred ------HHHHHHHHHHHhccCCHHHHHHHHHHchh
Q 010405 240 ------SISYIAVLSACSHLGWVEKGFYYFHSMFD 268 (511)
Q Consensus 240 ------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 268 (511)
..||-.|..-+...|++++|..+|+....
T Consensus 231 ~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 231 SLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 34666777777888888888888887776
No 326
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=81.65 E-value=2.8 Score=23.79 Aligned_cols=24 Identities=8% Similarity=-0.116 Sum_probs=12.3
Q ss_pred HHHHhcCchhHHHHHHHHHhhcCC
Q 010405 316 GACRVHRNAEMGQRIGNMLIESDQ 339 (511)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~~~p 339 (511)
.++...|+.++|.+.++++++..|
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHccCHHHHHHHHHHHHHHCc
Confidence 334445555555555555555544
No 327
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=81.53 E-value=20 Score=30.54 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHhcc
Q 010405 223 EAFELFENMKSKGISPD-SISYIAVLSACSHL 253 (511)
Q Consensus 223 ~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~ 253 (511)
+|+.-|++.+. +.|+ ..++..+..++...
T Consensus 53 dAisK~eeAL~--I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 53 DAISKFEEALK--INPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHH--H-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--cCCchHHHHHHHHHHHHHH
Confidence 66666666665 4555 35666676666544
No 328
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=81.07 E-value=11 Score=24.74 Aligned_cols=50 Identities=16% Similarity=0.058 Sum_probs=34.5
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCc
Q 010405 345 YILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKNYGY 420 (511)
Q Consensus 345 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~ 420 (511)
...++-++.+.|++++|.+..+.+.+. .|...++.+.-..+.++|.+.|.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 456788899999999999999988762 34455555544555667777663
No 329
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.88 E-value=36 Score=29.44 Aligned_cols=88 Identities=7% Similarity=-0.046 Sum_probs=57.5
Q ss_pred HHHhccCCHHHHHHHHHHchhhcCCCCCHhHH-----HHHHHHHHHcCCHHHHHHHHHhCCCCCCHHH--HHHHHHHHHh
Q 010405 248 SACSHLGWVEKGFYYFHSMFDVHGIKPELDHY-----ACMVDLLGRAGLLEEAENFIASMPMKPDNVI--WGTLLGACRV 320 (511)
Q Consensus 248 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~--~~~ll~~~~~ 320 (511)
..+...|++++|...++.... .|....+ -.|.......|.+++|+.+++...- ++-.. ...-...+..
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~-~~w~~~~~elrGDill~ 171 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE-ESWAAIVAELRGDILLA 171 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc-ccHHHHHHHHhhhHHHH
Confidence 456777888888888877664 1222222 3455667788899999988887531 11111 1222245788
Q ss_pred cCchhHHHHHHHHHhhcCCC
Q 010405 321 HRNAEMGQRIGNMLIESDQN 340 (511)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~p~ 340 (511)
.|+.++|...|++.++..+.
T Consensus 172 kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 172 KGDKQEARAAYEKALESDAS 191 (207)
T ss_pred cCchHHHHHHHHHHHHccCC
Confidence 89999999999988887643
No 330
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=80.80 E-value=11 Score=28.61 Aligned_cols=50 Identities=20% Similarity=0.235 Sum_probs=32.0
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHH
Q 010405 300 ASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLS 349 (511)
Q Consensus 300 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 349 (511)
-.+.+-|++.+..+.+.+|++.+++..|.++++-+.....+....|-.++
T Consensus 37 ~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 37 FGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp TTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred hccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 33456688888888888888888888888888888774443333555443
No 331
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=80.34 E-value=6.8 Score=35.90 Aligned_cols=57 Identities=7% Similarity=-0.105 Sum_probs=51.0
Q ss_pred HHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 314 LLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 314 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
....|...|.+.+|.++.++++.++|-+...+..|++.|+..|+--+|.+-++++.+
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 346689999999999999999999999999999999999999998888888887754
No 332
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=80.22 E-value=3.9 Score=23.49 Aligned_cols=28 Identities=25% Similarity=0.160 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 343 GRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 343 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
.+|..++..|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999988765
No 333
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=80.07 E-value=18 Score=27.23 Aligned_cols=62 Identities=16% Similarity=0.304 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 010405 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182 (511)
Q Consensus 120 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 182 (511)
.-++.+-++.+...++.|++....+.++||.+.+++..|.++++-++... ..+...|..++.
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 33455566666677788999999999999999999999999998776432 223445555543
No 334
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.92 E-value=3.7 Score=22.22 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=13.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHH
Q 010405 280 ACMVDLLGRAGLLEEAENFIA 300 (511)
Q Consensus 280 ~~li~~~~~~g~~~~A~~~~~ 300 (511)
..+..++...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 445566666666666666654
No 335
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.79 E-value=81 Score=32.79 Aligned_cols=270 Identities=11% Similarity=0.030 Sum_probs=140.4
Q ss_pred HHHHHHHHhhCCCC-ChhHHHHHHHH-----HHHCCChhHHHHHHHHHHH-------CCCCCCHhHHHHHHHHHHhcC--
Q 010405 89 VDDACRVFNQMPKR-SLVSWVVLISG-----FAQNGRPKEALALFREMQS-------LDLEPNSAILVSLLSACAQLG-- 153 (511)
Q Consensus 89 ~~~A~~~~~~~~~~-~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~-------~~~~p~~~t~~~ll~~~~~~~-- 153 (511)
...|.+.++...+. ++..-..+... +....+.+.|+..|+...+ .| +......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 55677777776553 44333333322 4456788999999988866 44 3345666777776643
Q ss_pred ---CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc---CCHHHHHHHHHhcCCC-CeeehHHHHHHHH----HcCChH
Q 010405 154 ---ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC---GSIDLAMQVFHSYGDK-DVSAYTSAIFGLA----MNGHSI 222 (511)
Q Consensus 154 ---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~---g~~~~A~~~~~~~~~~-~~~~~~~li~~~~----~~g~~~ 222 (511)
+.+.|..++.+..+.|. |+.... |...|... .+...|.++|...... .+.+.-.+...|. ...+..
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~-~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN-PDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC-chHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHH
Confidence 56778888888888874 344433 33333332 3577888888876653 3333333333222 234677
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHH---HH----cCCHHHH
Q 010405 223 EAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLL---GR----AGLLEEA 295 (511)
Q Consensus 223 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~---~~----~g~~~~A 295 (511)
.|..++.+..+.| .|...--...+..+.. +..+.+.-.+..+.+ .|..-....-..++... .. ..+.+.+
T Consensus 382 ~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~-~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~ 458 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAE-LGYEVAQSNAAYLLDQSEEDLFSRGVISTLERA 458 (552)
T ss_pred HHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHH-hhhhHHhhHHHHHHHhccccccccccccchhHH
Confidence 8888888888777 3333322333344444 666666655555554 33221111111111111 00 1234445
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----cCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcC---CchHHHHHHHHH
Q 010405 296 ENFIASMPMKPDNVIWGTLLGACRV----HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETL---KGENAEEVRKTM 368 (511)
Q Consensus 296 ~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m 368 (511)
..++.+...+-+......|-..|.. ..+++.|...+.++.... +.....|..++-..- .+..|.++++..
T Consensus 459 ~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~ 535 (552)
T KOG1550|consen 459 FSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQA 535 (552)
T ss_pred HHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHH
Confidence 5555554333344444444333322 234666666666655544 344445555543221 145666666555
Q ss_pred Hh
Q 010405 369 RK 370 (511)
Q Consensus 369 ~~ 370 (511)
.+
T Consensus 536 ~~ 537 (552)
T KOG1550|consen 536 SE 537 (552)
T ss_pred Hh
Confidence 44
No 336
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=79.50 E-value=17 Score=31.49 Aligned_cols=88 Identities=14% Similarity=0.037 Sum_probs=44.4
Q ss_pred HHHHHCCChhHHHHHHHHHHHCCCCCCH-----hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 010405 112 SGFAQNGRPKEALALFREMQSLDLEPNS-----AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAK 186 (511)
Q Consensus 112 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 186 (511)
.-+.++|++++|..-|.+.+.. +++.. ..|..-..+..+++.++.|+.--...++.+.. ......--..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence 4456778888888877777664 22222 23333344555666666666665555554311 11111122334444
Q ss_pred cCCHHHHHHHHHhcC
Q 010405 187 CGSIDLAMQVFHSYG 201 (511)
Q Consensus 187 ~g~~~~A~~~~~~~~ 201 (511)
...+++|+.-|..+.
T Consensus 181 ~ek~eealeDyKki~ 195 (271)
T KOG4234|consen 181 MEKYEEALEDYKKIL 195 (271)
T ss_pred hhhHHHHHHHHHHHH
Confidence 444444444444443
No 337
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=79.43 E-value=2.8 Score=23.85 Aligned_cols=28 Identities=21% Similarity=0.141 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010405 344 RYILLSNIYVETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 344 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 371 (511)
++..++.+|.+.|++++|.+.++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4567889999999999999999998764
No 338
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=79.10 E-value=1.1e+02 Score=34.02 Aligned_cols=254 Identities=11% Similarity=0.050 Sum_probs=109.2
Q ss_pred HHHccCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHH
Q 010405 63 KLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142 (511)
Q Consensus 63 ~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 142 (511)
.+.+.+..+|+.+-...+..+.+.+..+....+...+..+|...-...+.++.+.+........+..+... +|...-
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR 701 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVR 701 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHH
Confidence 44444456777777777777766665443344444444455444444444444332221112223233322 455444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChH
Q 010405 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSI 222 (511)
Q Consensus 143 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 222 (511)
...+.++...+..+ .. .+-.+.+ .+|..+-...+.++.+.+..+ .+.....+++...-...+.++...+..+
T Consensus 702 ~~A~~aL~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~---~l~~~l~D~~~~VR~~aa~aL~~~~~~~ 773 (897)
T PRK13800 702 AAALDVLRALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVE---SVAGAATDENREVRIAVAKGLATLGAGG 773 (897)
T ss_pred HHHHHHHHhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcH---HHHHHhcCCCHHHHHHHHHHHHHhcccc
Confidence 45555554433211 11 1111221 334444455555555444332 1222333444444444455555544332
Q ss_pred -HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHh
Q 010405 223 -EAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIAS 301 (511)
Q Consensus 223 -~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 301 (511)
.+...+..+.. .+|...-...+.++...|..+.+...+..+.+ .++..+-...+.++.+.+.. ++...+-.
T Consensus 774 ~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~----d~d~~VR~~Aa~aL~~l~~~-~a~~~L~~ 845 (897)
T PRK13800 774 APAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR----ASAWQVRQGAARALAGAAAD-VAVPALVE 845 (897)
T ss_pred chhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc----CCChHHHHHHHHHHHhcccc-chHHHHHH
Confidence 12333434332 23444445555555555554433333333332 23444444455555555442 23333333
Q ss_pred CCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHh
Q 010405 302 MPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLI 335 (511)
Q Consensus 302 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 335 (511)
+-..|+...-..-+.++...+....+...+..++
T Consensus 846 ~L~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 846 ALTDPHLDVRKAAVLALTRWPGDPAARDALTTAL 879 (897)
T ss_pred HhcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3223454444444444444322233444444333
No 339
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=78.81 E-value=92 Score=32.87 Aligned_cols=163 Identities=10% Similarity=0.010 Sum_probs=72.1
Q ss_pred eehHHHHHHHHH---cCChHHHHHHHHHHHhCCCCCCHH-HHHHHH-HHHhccCCHHHHH-----------HHHHHchhh
Q 010405 206 SAYTSAIFGLAM---NGHSIEAFELFENMKSKGISPDSI-SYIAVL-SACSHLGWVEKGF-----------YYFHSMFDV 269 (511)
Q Consensus 206 ~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll-~~~~~~g~~~~a~-----------~~~~~~~~~ 269 (511)
.-+..||..|.+ ..++.+|+++|--+....- |+.. .+...+ ......++++.-. -++++-.+-
T Consensus 325 ln~arLI~~Y~~~F~~td~~~Al~Y~~li~~~~~-~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~L 403 (613)
T PF04097_consen 325 LNFARLIGQYTRSFEITDPREALQYLYLICLFKD-PEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSL 403 (613)
T ss_dssp --HHHHHHHHHHTTTTT-HHHHHHHHHGGGGS-S-CCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGG
T ss_pred cCHHHHHHHHHHHHhccCHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccc
Confidence 456778888876 3577888888877665322 2221 222221 1222222221110 111210000
Q ss_pred cCCCC-CHh---HHHHHHHHHHHcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhc-Cc-----------hhHHHHHHH
Q 010405 270 HGIKP-ELD---HYACMVDLLGRAGLLEEAENFIASMPMKPD-NVIWGTLLGACRVH-RN-----------AEMGQRIGN 332 (511)
Q Consensus 270 ~~~~p-~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~-g~-----------~~~a~~~~~ 332 (511)
-++.. +.. .......-+...|++++|..+|.-.+.-.. ....+.+++-.... .. ...|..+.+
T Consensus 404 i~~~~~~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~ 483 (613)
T PF04097_consen 404 IKFDDDEDFLREIIEQAAREAEERGRFEDAILLYHLAEEYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILE 483 (613)
T ss_dssp GT-SSSSHHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHH
Confidence 11222 222 223334456678999999999988862111 12344444332222 22 233444443
Q ss_pred HHhh-------cCCCCchhHHHHHHH-----HHHcCCchHHHHHHHHHH
Q 010405 333 MLIE-------SDQNHDGRYILLSNI-----YVETLKGENAEEVRKTMR 369 (511)
Q Consensus 333 ~~~~-------~~p~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~m~ 369 (511)
.... ..+....++..|..+ +...|+|++|.+.++++.
T Consensus 484 ~y~~~~~~~~~~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 484 RYKSNPHISSKVSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKLD 532 (613)
T ss_dssp HHTTSHHHHTTS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT
T ss_pred HHHhCcchHhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 3333 112223344444333 578899999987776553
No 340
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=78.55 E-value=78 Score=31.86 Aligned_cols=159 Identities=13% Similarity=0.086 Sum_probs=103.3
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 010405 103 SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182 (511)
Q Consensus 103 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 182 (511)
|-...-+++..+.++-.+.-...+..+|..-| .+...|..++.+|... ..++-..+++++++..+. |++...-|++
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 33445567888888888888888888888754 4677888888888887 557778888888887654 5666667777
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCe---------eehHHHHHHHHHcCChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhc
Q 010405 183 MYAKCGSIDLAMQVFHSYGDKDV---------SAYTSAIFGLAMNGHSIEAFELFENMKS-KGISPDSISYIAVLSACSH 252 (511)
Q Consensus 183 ~y~~~g~~~~A~~~~~~~~~~~~---------~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~~~~~ 252 (511)
.|-+ ++.+.+...|.++..+=+ ..|..+...- ..+.+..+.+...... .|..--.+.+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 7776 788888887776543111 1344433211 2344555555555543 2333334455555566777
Q ss_pred cCCHHHHHHHHHHchh
Q 010405 253 LGWVEKGFYYFHSMFD 268 (511)
Q Consensus 253 ~g~~~~a~~~~~~~~~ 268 (511)
..++++|++++..+.+
T Consensus 218 ~eN~~eai~Ilk~il~ 233 (711)
T COG1747 218 NENWTEAIRILKHILE 233 (711)
T ss_pred ccCHHHHHHHHHHHhh
Confidence 7777777777776665
No 341
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=77.78 E-value=35 Score=29.75 Aligned_cols=74 Identities=11% Similarity=0.021 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcC--CCCCHhHHHHHHHHHHHcCCHHHHH
Q 010405 222 IEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG--IKPELDHYACMVDLLGRAGLLEEAE 296 (511)
Q Consensus 222 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~ 296 (511)
++|.+.|-++...+.--++.... .+..|....+.+++++++....+..+ -.+|+..+..|+..|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~-aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQY-ALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHH-HHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 46666666665554332333333 33333345666666666666554221 1355666666666666666666653
No 342
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=77.52 E-value=56 Score=29.65 Aligned_cols=60 Identities=17% Similarity=0.038 Sum_probs=31.6
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHCCC--CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010405 109 VLISGFAQNGRPKEALALFREMQSLDL--EPNSAILVSLLSACAQLGALDYGNWVYSYIQKK 168 (511)
Q Consensus 109 ~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 168 (511)
.-+..-.+.|++++|.+.|+.+...-. +-...+...++-++-+.++.+.|....++..+.
T Consensus 39 ~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 39 NEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 334444566666666666666654421 112334444455555556666666665555554
No 343
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=77.35 E-value=8.9 Score=33.64 Aligned_cols=63 Identities=16% Similarity=0.010 Sum_probs=46.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC
Q 010405 279 YACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH 341 (511)
Q Consensus 279 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 341 (511)
.+.-++.+.+.+.+++|+...+.- ..+| |...-..++..++..|++++|..-++-+-++.|..
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 344566777788888888877654 5556 44556667788888899998888888888888765
No 344
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=77.05 E-value=16 Score=29.46 Aligned_cols=49 Identities=8% Similarity=-0.011 Sum_probs=33.8
Q ss_pred CchhHHHHHHHHHhh-cCCCCch-hHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 322 RNAEMGQRIGNMLIE-SDQNHDG-RYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 322 g~~~~a~~~~~~~~~-~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
.+..+++.+++.+.+ -.|.... ....|+-++.+.++++.+.++.+.+.+
T Consensus 49 ~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 49 EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 456677788888876 4444333 334667778888888888888887765
No 345
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=76.60 E-value=4.5 Score=22.04 Aligned_cols=21 Identities=24% Similarity=0.167 Sum_probs=8.7
Q ss_pred HHHHHHHHHcCCchHHHHHHH
Q 010405 346 ILLSNIYVETLKGENAEEVRK 366 (511)
Q Consensus 346 ~~l~~~~~~~g~~~~A~~~~~ 366 (511)
..++..|...|++++|...++
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~ 25 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYE 25 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHH
Confidence 333444444444444444443
No 346
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.33 E-value=12 Score=34.67 Aligned_cols=94 Identities=11% Similarity=0.179 Sum_probs=64.3
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-C------C--hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHH
Q 010405 72 NDVSWNSILGGLVRFGSVDDACRVFNQMPK-R------S--LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142 (511)
Q Consensus 72 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~------~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 142 (511)
.+.+...++..-....+++++...+-+++. + + .++|-.++. .-++++++.++..=.+.|+-||.+++
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccchhhH
Confidence 344455555555666778888877777653 2 2 223333222 23667888888877788888899999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010405 143 VSLLSACAQLGALDYGNWVYSYIQKKC 169 (511)
Q Consensus 143 ~~ll~~~~~~~~~~~a~~~~~~~~~~~ 169 (511)
..+++.+.+.++...|.++.-.|....
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999888888888888777666543
No 347
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=76.27 E-value=32 Score=31.60 Aligned_cols=87 Identities=15% Similarity=0.141 Sum_probs=53.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHH-
Q 010405 212 IFGLAMNGHSIEAFELFENMKS--KGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGR- 288 (511)
Q Consensus 212 i~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~- 288 (511)
|.+++..+++.+++...-+--+ ..++|...-.. |-.|++.+....+.++-..-.+ ..-.-+..-|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLC--ILLysKv~Ep~amlev~~~WL~-~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELC--ILLYSKVQEPAAMLEVASAWLQ-DPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHH--HHHHHHhcCHHHHHHHHHHHHh-CcccCCchhhHHHHHHHHHH
Confidence 6778888888888776555433 23444433333 3347788888777776666655 2222223347776666654
Q ss_pred ----cCCHHHHHHHHHh
Q 010405 289 ----AGLLEEAENFIAS 301 (511)
Q Consensus 289 ----~g~~~~A~~~~~~ 301 (511)
.|.+++|++++..
T Consensus 167 VLlPLG~~~eAeelv~g 183 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVG 183 (309)
T ss_pred HHhccccHHHHHHHHhc
Confidence 5888888888743
No 348
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=75.92 E-value=71 Score=30.05 Aligned_cols=62 Identities=19% Similarity=0.328 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc--cCC----HHHHHHHHHHchhhcCCC--CCHhHHHHHH
Q 010405 222 IEAFELFENMKSKGISPDSISYIAVLSACSH--LGW----VEKGFYYFHSMFDVHGIK--PELDHYACMV 283 (511)
Q Consensus 222 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~g~----~~~a~~~~~~~~~~~~~~--p~~~~~~~li 283 (511)
++.+.+++.|.+.|++-+..+|.+....... ..+ ...+..+|+.|++.+.+- ++-..+..|+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lL 148 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALL 148 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHH
Confidence 3667788889999988887777653333222 222 456888999998866543 2333444443
No 349
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.90 E-value=1.1e+02 Score=32.40 Aligned_cols=151 Identities=14% Similarity=0.127 Sum_probs=93.1
Q ss_pred HHHHHHcCChHHHHHHHccCCCC-----ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHH
Q 010405 49 INGYVRNGEILEGLKLFDKMPQR-----NDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEA 123 (511)
Q Consensus 49 i~~~~~~g~~~~A~~~~~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 123 (511)
|.-+.+.+.+++|+.+-+.-... -..++...|+.+.-.|++++|-...-.|-..+..-|---+..+...++....
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 44566788888998887776642 2346777888888889999999888888888888888888888777776554
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHH------------------HHHHHHHcCCCccHHHHHHHHHHHH
Q 010405 124 LALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNW------------------VYSYIQKKCIKLDSILCAALIDMYA 185 (511)
Q Consensus 124 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~------------------~~~~~~~~~~~~~~~~~~~li~~y~ 185 (511)
..++ .....+.+...|..++..+.. .+...-.+ +..+..+. .-+......|+..|.
T Consensus 443 a~~l---Pt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se~~~L~e~La~LYl 516 (846)
T KOG2066|consen 443 APYL---PTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN--SESTALLEVLAHLYL 516 (846)
T ss_pred hccC---CCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh--ccchhHHHHHHHHHH
Confidence 3332 211112234455555555544 11111110 11111111 112234445888889
Q ss_pred hcCCHHHHHHHHHhcCCCCe
Q 010405 186 KCGSIDLAMQVFHSYGDKDV 205 (511)
Q Consensus 186 ~~g~~~~A~~~~~~~~~~~~ 205 (511)
..+++++|.+.+-...++++
T Consensus 517 ~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 517 YDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred HccChHHHHHHHHhccChHH
Confidence 99999999888877776543
No 350
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=75.71 E-value=27 Score=26.79 Aligned_cols=79 Identities=9% Similarity=0.098 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHh
Q 010405 154 ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKS 233 (511)
Q Consensus 154 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 233 (511)
..++|..|.+.+...+- ....+--+-+..+.+.|++++|...=.....||..+|-++-. .+.|..+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 45667777777666653 233333344555667777777743333344467777665543 456777777777776655
Q ss_pred CC
Q 010405 234 KG 235 (511)
Q Consensus 234 ~g 235 (511)
+|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 54
No 351
>PRK10941 hypothetical protein; Provisional
Probab=75.55 E-value=16 Score=33.75 Aligned_cols=60 Identities=17% Similarity=0.038 Sum_probs=52.7
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 311 WGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 311 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
.+.|-.++.+.++++.|+++.+.++.+.|+++.-+.--+-+|.+.|.+..|..=++...+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 455567789999999999999999999999988888888899999999999998887765
No 352
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=75.18 E-value=15 Score=36.09 Aligned_cols=126 Identities=17% Similarity=0.190 Sum_probs=84.5
Q ss_pred HHHHHHcCChHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcC
Q 010405 212 IFGLAMNGHSIEAFE-LFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAG 290 (511)
Q Consensus 212 i~~~~~~g~~~~A~~-~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 290 (511)
|.--...|+.-.|-+ ++.-+.+..-.|+.+...+.+ ..+.|+++.+.+.+..... -+.....+..+++....+.|
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~ 371 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLA 371 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchh
Confidence 333445666665544 555555555567766665554 5778999999988887765 34455677888999999999
Q ss_pred CHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC
Q 010405 291 LLEEAENFIASM-PMK-PDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH 341 (511)
Q Consensus 291 ~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 341 (511)
++++|..+-+.| +.+ -++.....-.......|-++++.-.++++..++|+.
T Consensus 372 r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 372 RWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred hHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 999999988877 211 133333333334556677889999999988877653
No 353
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.77 E-value=56 Score=28.33 Aligned_cols=52 Identities=15% Similarity=0.078 Sum_probs=22.1
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCeee--hHHHHHHHHHcCChHHHHHHHHHHHhC
Q 010405 183 MYAKCGSIDLAMQVFHSYGDKDVSA--YTSAIFGLAMNGHSIEAFELFENMKSK 234 (511)
Q Consensus 183 ~y~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~ 234 (511)
.....|.+|+|++.++....++-.+ ...-...+...|+-++|..-|.+.++.
T Consensus 135 vq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 135 VQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 3344455555555544444332222 111223344445555555555444443
No 354
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=74.56 E-value=2.1e+02 Score=34.84 Aligned_cols=144 Identities=10% Similarity=0.005 Sum_probs=92.2
Q ss_pred HHHHHHHhcCChHHHHHHHhcC----CCCC--hhHHHHHHHHHHHcCChHHHHHHHcc-CCCCChhHHHHHHHHHHhcCC
Q 010405 16 SLIQFYSVCGRVRDARWVFDES----DDLD--VVSWNSMINGYVRNGEILEGLKLFDK-MPQRNDVSWNSILGGLVRFGS 88 (511)
Q Consensus 16 ~li~~~~~~g~~~~A~~~f~~~----~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~~~~~~~~li~~~~~~g~ 88 (511)
.|..+-.+|+.+..|...|++- .+.+ ..-|-.+...|+..++++....+... -..|+. ..-|......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhcc
Confidence 4445666888999999988873 2211 12244444478888888877777663 333332 234455677899
Q ss_pred HHHHHHHHhhCCCC--C-hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHH-HHHHHhcCCHHHHHHHHH
Q 010405 89 VDDACRVFNQMPKR--S-LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL-LSACAQLGALDYGNWVYS 163 (511)
Q Consensus 89 ~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~ 163 (511)
++.|...|+++.+. + ...++-++......|.++.++-..+-.... ..+....++++ ..+--+.++++.....+.
T Consensus 1465 ~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 99999999999863 3 456887777777778888777755554433 23333334333 344467778887777665
No 355
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=73.46 E-value=6.6 Score=25.85 Aligned_cols=32 Identities=16% Similarity=0.088 Sum_probs=24.9
Q ss_pred HHHHHHHhcCchhHHHHHHHHHhhcCCCCchh
Q 010405 313 TLLGACRVHRNAEMGQRIGNMLIESDQNHDGR 344 (511)
Q Consensus 313 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 344 (511)
.+.-++.+.|++++|.+..+.+++.+|++..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 35567889999999999999999999988543
No 356
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=72.52 E-value=42 Score=25.84 Aligned_cols=53 Identities=17% Similarity=0.164 Sum_probs=28.9
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCC
Q 010405 80 LGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLD 134 (511)
Q Consensus 80 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 134 (511)
+..+.+.|++++|...=.....||...|.+|-. .+.|-.+++...+.++-.+|
T Consensus 47 ~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 47 LSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASSG 99 (116)
T ss_dssp HHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-S
T ss_pred HHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 344566777777744444445567777765543 36666666666666665544
No 357
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=71.16 E-value=7.4 Score=24.45 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=22.8
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 346 ILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 346 ~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
..|+.+|...|+.+.|.+++++....|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 358899999999999999999887543
No 358
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=70.62 E-value=1.2e+02 Score=30.51 Aligned_cols=172 Identities=10% Similarity=0.060 Sum_probs=95.5
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010405 171 KLDSILCAALIDMYAKCGSIDLAMQVFHSYGD--KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248 (511)
Q Consensus 171 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 248 (511)
+.|....-++++.+...-.+.-.+.+..+|.. .+-..|..++..|.++ ..++-..+++++.+..+ |...+..-+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHHH
Confidence 44555566677777776666666666666654 4555677777777777 55667777777766543 3333333333
Q ss_pred HHhccCCHHHHHHHHHHchhhcCCCCC------HhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHH
Q 010405 249 ACSHLGWVEKGFYYFHSMFDVHGIKPE------LDHYACMVDLLGRAGLLEEAENFIASM----PMKPDNVIWGTLLGAC 318 (511)
Q Consensus 249 ~~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~ 318 (511)
.+...++...+..+|..+.. .+.|. ...|.-|.... ..+.+.-..+...+ +...-.+.+.-+-.-|
T Consensus 140 ~~yEkik~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHhchhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 34444777777777777664 23331 22344443322 22344444444433 2222334444455556
Q ss_pred HhcCchhHHHHHHHHHhhcCCCCchhHHHHH
Q 010405 319 RVHRNAEMGQRIGNMLIESDQNHDGRYILLS 349 (511)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 349 (511)
....++++|++++..+++.+..|..+--.++
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i 246 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEII 246 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHH
Confidence 6777777777777777665554444433333
No 359
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=70.18 E-value=33 Score=30.84 Aligned_cols=88 Identities=10% Similarity=0.020 Sum_probs=64.3
Q ss_pred HHHHHHcCCHHHHHHHHHhC---------CCCCCHHHHH-----------HHHHHHHhcCchhHHHHHHHHHhhcCCCCc
Q 010405 283 VDLLGRAGLLEEAENFIASM---------PMKPDNVIWG-----------TLLGACRVHRNAEMGQRIGNMLIESDQNHD 342 (511)
Q Consensus 283 i~~~~~~g~~~~A~~~~~~~---------~~~p~~~~~~-----------~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 342 (511)
.+-+.+.|++.+|..-|++. .-+|...-|. ..-.++...|++-++++....++...|.+.
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nv 264 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNV 264 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchH
Confidence 34456677777776655543 2345444442 233456788999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 343 GRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 343 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
.+|+.-+.+.+..=+.++|.+=|....+
T Consensus 265 KA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 265 KAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 9999888888888788888888877765
No 360
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=68.74 E-value=15 Score=26.40 Aligned_cols=47 Identities=9% Similarity=0.110 Sum_probs=27.7
Q ss_pred ccCCHHHHHHHHHHchhhcCCCCC-HhHHHHHHHHHHHcCCHHHHHHH
Q 010405 252 HLGWVEKGFYYFHSMFDVHGIKPE-LDHYACMVDLLGRAGLLEEAENF 298 (511)
Q Consensus 252 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~ 298 (511)
+....++|+..|....+...-+|+ -.+..+|+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666677766666653322233 33456666777777777666654
No 361
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=68.51 E-value=14 Score=23.22 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=10.0
Q ss_pred HHHHHHHCCChhHHHHHHHHHH
Q 010405 110 LISGFAQNGRPKEALALFREMQ 131 (511)
Q Consensus 110 li~~~~~~g~~~~A~~~~~~m~ 131 (511)
|..+|...|+.+.|.+++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHH
Confidence 3344444444444444444444
No 362
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=68.46 E-value=14 Score=27.45 Aligned_cols=45 Identities=9% Similarity=0.019 Sum_probs=31.3
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 328 QRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 328 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
...++...+.+|+|...-..++..+...|++++|.+.+-.+.++.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 344555666788888888888888888888888888877776543
No 363
>PRK11619 lytic murein transglycosylase; Provisional
Probab=68.02 E-value=1.7e+02 Score=31.09 Aligned_cols=223 Identities=7% Similarity=-0.100 Sum_probs=110.2
Q ss_pred CCHHHHHHHHHHHHHcC-CCcc--HHHHHHHHHHHHhcCCHHHHHHHHHhcCCC--CeeehHHHHHHHHHcCChHHHHHH
Q 010405 153 GALDYGNWVYSYIQKKC-IKLD--SILCAALIDMYAKCGSIDLAMQVFHSYGDK--DVSAYTSAIFGLAMNGHSIEAFEL 227 (511)
Q Consensus 153 ~~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~ 227 (511)
.+.+.|...+....... +.+. ..+...+.......+...+|...++..... |...+..-+..-...++++.+...
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~ 334 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTW 334 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHH
Confidence 34566666666553332 2221 112233322222222244555555544321 333333333344466666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhc-----------CCC--------CCHh------HHHHH
Q 010405 228 FENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH-----------GIK--------PELD------HYACM 282 (511)
Q Consensus 228 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----------~~~--------p~~~------~~~~l 282 (511)
+..|.... .-...-.--+.++....|+.++|..+|..+.... |.+ |... .-..-
T Consensus 335 i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~r 413 (644)
T PRK11619 335 LARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPEMAR 413 (644)
T ss_pred HHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChHHHH
Confidence 66664321 1122222334555555677777766666653311 111 0000 01122
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcC---CCCchhHHHHHHHHHHcCCch
Q 010405 283 VDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESD---QNHDGRYILLSNIYVETLKGE 359 (511)
Q Consensus 283 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~ 359 (511)
+..+...|+..+|...+..+....+......+.......|..+.++.........+ -.-+..|...+..+++.-.++
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~ 493 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIP 493 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCC
Confidence 34566678888888777665323455555555566677788888877765543311 111345666677777766777
Q ss_pred HHHHHHHHHHhCCCccC
Q 010405 360 NAEEVRKTMRKRKIKRA 376 (511)
Q Consensus 360 ~A~~~~~~m~~~g~~~~ 376 (511)
.+.-.--...+.++.|.
T Consensus 494 ~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 494 QSYAMAIARQESAWNPK 510 (644)
T ss_pred HHHHHHHHHHhcCCCCC
Confidence 66644333445666544
No 364
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=66.78 E-value=19 Score=32.18 Aligned_cols=54 Identities=11% Similarity=-0.056 Sum_probs=28.4
Q ss_pred HHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 010405 315 LGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTM 368 (511)
Q Consensus 315 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 368 (511)
+-.+.+..+++.+..--++++++.|+.......|.........+++|+..+.+.
T Consensus 51 alchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 51 ALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred HHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 333444555555555555555555555555555555555555555555555544
No 365
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=66.60 E-value=82 Score=29.06 Aligned_cols=86 Identities=16% Similarity=0.086 Sum_probs=44.0
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHC--CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh-
Q 010405 110 LISGFAQNGRPKEALALFREMQSL--DLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAK- 186 (511)
Q Consensus 110 li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~- 186 (511)
=|.+++..+++.+++...-+--+. .++| .....-|-.|.+.+.+..+.++-..-.+..-.-+..-|.++++.|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 356677777777776654333221 1222 22333344456666666666665555553222233345555555543
Q ss_pred ----cCCHHHHHHHH
Q 010405 187 ----CGSIDLAMQVF 197 (511)
Q Consensus 187 ----~g~~~~A~~~~ 197 (511)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 46666665554
No 366
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=65.85 E-value=12 Score=20.78 Aligned_cols=29 Identities=10% Similarity=0.098 Sum_probs=22.0
Q ss_pred CchhHHHHHHHHHhhcCCCCchhHHHHHH
Q 010405 322 RNAEMGQRIGNMLIESDQNHDGRYILLSN 350 (511)
Q Consensus 322 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 350 (511)
|+.+.+..+|++++...|.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46778888888888888877777766554
No 367
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.83 E-value=4.4 Score=37.98 Aligned_cols=87 Identities=13% Similarity=0.089 Sum_probs=55.3
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHH
Q 010405 289 AGLLEEAENFIASM-PMKPD-NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRK 366 (511)
Q Consensus 289 ~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 366 (511)
.|.+++|.+.|... +..|. ...|.--.+++.+.+....|++-+..+.+++|+....|-.-..+..-.|+|++|...+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 45566666666554 33332 33444444556667777777777777777777766666666666666777777777777
Q ss_pred HHHhCCCcc
Q 010405 367 TMRKRKIKR 375 (511)
Q Consensus 367 ~m~~~g~~~ 375 (511)
...+.++.+
T Consensus 207 ~a~kld~dE 215 (377)
T KOG1308|consen 207 LACKLDYDE 215 (377)
T ss_pred HHHhccccH
Confidence 766666543
No 368
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=65.74 E-value=1.8e+02 Score=30.64 Aligned_cols=152 Identities=12% Similarity=0.046 Sum_probs=80.9
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHccCC-C------CChhHHHHHHHHHH-hcCCHHHHHHHHhhCCC----CCh--
Q 010405 39 DLDVVSWNSMINGYVRNGEILEGLKLFDKMP-Q------RNDVSWNSILGGLV-RFGSVDDACRVFNQMPK----RSL-- 104 (511)
Q Consensus 39 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~------~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~----~~~-- 104 (511)
+.++..|..||+. |+++++.+. + .+..++--+...+. ...+++.|+..+++... ++.
T Consensus 27 ~~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d 97 (608)
T PF10345_consen 27 EEQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTD 97 (608)
T ss_pred hhhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 4566778888764 333443333 1 24456666666665 57889999988887532 221
Q ss_pred ---hHHHHHHHHHHHCCChhHHHHHHHHHHHCC----CCCCHhHHHHH-HHHHHhcCCHHHHHHHHHHHHHcC---CCcc
Q 010405 105 ---VSWVVLISGFAQNGRPKEALALFREMQSLD----LEPNSAILVSL-LSACAQLGALDYGNWVYSYIQKKC---IKLD 173 (511)
Q Consensus 105 ---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~~---~~~~ 173 (511)
..-..++..+.+.+... |+...++..+.- ..+-...|..+ +..+...++...|.+.++.+.... ..+.
T Consensus 98 ~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~ 176 (608)
T PF10345_consen 98 LKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPA 176 (608)
T ss_pred HHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHH
Confidence 12335566666666655 888887765431 11222223332 222222367787887777765532 2333
Q ss_pred HHHHHHHHHHHH--hcCCHHHHHHHHHhc
Q 010405 174 SILCAALIDMYA--KCGSIDLAMQVFHSY 200 (511)
Q Consensus 174 ~~~~~~li~~y~--~~g~~~~A~~~~~~~ 200 (511)
..++-.++.+.. +.+..+++.+..+++
T Consensus 177 ~~v~~~l~~~~l~l~~~~~~d~~~~l~~~ 205 (608)
T PF10345_consen 177 VFVLASLSEALLHLRRGSPDDVLELLQRA 205 (608)
T ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHH
Confidence 444444444333 234445555555443
No 369
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=65.12 E-value=1.7e+02 Score=31.01 Aligned_cols=181 Identities=15% Similarity=0.191 Sum_probs=100.7
Q ss_pred HHHHHHHHHHcCCCcc---HHHHHHHHHHHHhcCCHHHHHHHHHhcCC-CC---------e-eehHHHHHHHHHcCChHH
Q 010405 158 GNWVYSYIQKKCIKLD---SILCAALIDMYAKCGSIDLAMQVFHSYGD-KD---------V-SAYTSAIFGLAMNGHSIE 223 (511)
Q Consensus 158 a~~~~~~~~~~~~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~---------~-~~~~~li~~~~~~g~~~~ 223 (511)
-..++.+|.++=-.|+ ..+...++-.|....+++...++.+.+.. || + ..|.-.+.--.+-|+-++
T Consensus 182 l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRak 261 (1226)
T KOG4279|consen 182 LNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAK 261 (1226)
T ss_pred HHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHH
Confidence 3445666666533343 33455566677788888888888776654 21 1 112222222234577788
Q ss_pred HHHHHHHHHhC--CCCCCHHHHHH-------HHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCC-HH
Q 010405 224 AFELFENMKSK--GISPDSISYIA-------VLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGL-LE 293 (511)
Q Consensus 224 A~~~~~~m~~~--g~~p~~~t~~~-------ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-~~ 293 (511)
|+...-.|.+. .+.||...... +-+.|...+..+.|.++|++.-+ +.|+..+--.+...+...|. ++
T Consensus 262 AL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe---veP~~~sGIN~atLL~aaG~~Fe 338 (1226)
T KOG4279|consen 262 ALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE---VEPLEYSGINLATLLRAAGEHFE 338 (1226)
T ss_pred HHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc---cCchhhccccHHHHHHHhhhhcc
Confidence 88877777653 36677553321 12235566778889999988754 67765543333333333332 22
Q ss_pred HHHHH------HHhC-CCCCC---HHH-H--HHHHHHHHhcCchhHHHHHHHHHhhcCCCC
Q 010405 294 EAENF------IASM-PMKPD---NVI-W--GTLLGACRVHRNAEMGQRIGNMLIESDQNH 341 (511)
Q Consensus 294 ~A~~~------~~~~-~~~p~---~~~-~--~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 341 (511)
...++ +..+ +.+-. ... | ...+.+-.-.+++.+|.+..+.|.++.|+.
T Consensus 339 ns~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 339 NSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred chHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCce
Confidence 22211 1111 11111 111 1 234556667789999999999999998854
No 370
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=64.94 E-value=1.9e+02 Score=30.55 Aligned_cols=86 Identities=15% Similarity=0.149 Sum_probs=36.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHH---
Q 010405 212 IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGR--- 288 (511)
Q Consensus 212 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~--- 288 (511)
...+.-.|+++.|++.+.+ ..+...+.+.+...+..|.-.+-.+... ..+.....-.|..-.+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3445567888888887766 2233445555555444332222111111 2222101111112456677777765
Q ss_pred cCCHHHHHHHHHhC
Q 010405 289 AGLLEEAENFIASM 302 (511)
Q Consensus 289 ~g~~~~A~~~~~~~ 302 (511)
..++.+|.+.+--+
T Consensus 340 ~td~~~Al~Y~~li 353 (613)
T PF04097_consen 340 ITDPREALQYLYLI 353 (613)
T ss_dssp TT-HHHHHHHHHGG
T ss_pred ccCHHHHHHHHHHH
Confidence 35677777777666
No 371
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=64.42 E-value=41 Score=26.72 Aligned_cols=71 Identities=15% Similarity=0.210 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 010405 223 EAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM 302 (511)
Q Consensus 223 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 302 (511)
+..+-+......++.|+......-|+||.+.+++..|.++|+-++.+. .+....|..+++ +-..+++++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~--g~~k~~Y~y~v~---------elkpvl~EL 135 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC--GAQKQVYPYYVK---------ELKPVLNEL 135 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc--ccHHHHHHHHHH---------HHHHHHHHh
Confidence 555556666677888999999999999999999999999999887643 333335655543 445566666
Q ss_pred CC
Q 010405 303 PM 304 (511)
Q Consensus 303 ~~ 304 (511)
++
T Consensus 136 GI 137 (149)
T KOG4077|consen 136 GI 137 (149)
T ss_pred CC
Confidence 53
No 372
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=64.20 E-value=1.2e+02 Score=27.92 Aligned_cols=159 Identities=16% Similarity=0.071 Sum_probs=78.9
Q ss_pred hcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHH----HHhCCCCCCHHHHHHHHHHHhccCCHH-HHH
Q 010405 186 KCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFEN----MKSKGISPDSISYIAVLSACSHLGWVE-KGF 260 (511)
Q Consensus 186 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~~ll~~~~~~g~~~-~a~ 260 (511)
+.+++++|++++..- ...+.++|+..-|-++-.- ..+.+.++|......++..+...+.-+ +-.
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 456677776665431 2334556665555444333 334456666655555555544332211 122
Q ss_pred HHHHHchhh--cC--CCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhh
Q 010405 261 YYFHSMFDV--HG--IKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIE 336 (511)
Q Consensus 261 ~~~~~~~~~--~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (511)
++.+.+.+- .+ -.-++.....+...|.+.|++.+|+..|-.-. .|+...+..++.-....
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~~~~~--------------- 134 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEEWSTK--------------- 134 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHHHHHh---------------
Confidence 222222221 12 22357788889999999999999988775432 22232222233322222
Q ss_pred cCCCCchhHH-HHHHHHHHcCCchHHHHHHHHHHhC
Q 010405 337 SDQNHDGRYI-LLSNIYVETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 337 ~~p~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~~ 371 (511)
..|.+...|. ..+--|...|+...|...++...++
T Consensus 135 ~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 135 GYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp TSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred cCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3333334443 4445577889999999988877764
No 373
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=63.92 E-value=94 Score=26.63 Aligned_cols=77 Identities=16% Similarity=0.101 Sum_probs=43.7
Q ss_pred HHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcC----CHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHH
Q 010405 158 GNWVYSYIQKKCIKLD-SILCAALIDMYAKCG----SIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMK 232 (511)
Q Consensus 158 a~~~~~~~~~~~~~~~-~~~~~~li~~y~~~g----~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 232 (511)
|..-|++++.. .|+ ..++..+..+|...+ +..+|...|+ +|...|++..
T Consensus 54 AisK~eeAL~I--~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~------------------------kA~~~FqkAv 107 (186)
T PF06552_consen 54 AISKFEEALKI--NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFE------------------------KATEYFQKAV 107 (186)
T ss_dssp HHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHH---HHHHHHHHH------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHhc--CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHH------------------------HHHHHHHHHH
Confidence 33334444443 333 355666666666543 4445555555 7888888877
Q ss_pred hCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchh
Q 010405 233 SKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD 268 (511)
Q Consensus 233 ~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 268 (511)
+ ..|+..+|+.-+..+. +|-+++.++.+
T Consensus 108 ~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~ 135 (186)
T PF06552_consen 108 D--EDPNNELYRKSLEMAA------KAPELHMEIHK 135 (186)
T ss_dssp H--H-TT-HHHHHHHHHHH------THHHHHHHHHH
T ss_pred h--cCCCcHHHHHHHHHHH------hhHHHHHHHHH
Confidence 7 4788889988887664 34455555544
No 374
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=63.20 E-value=1.5e+02 Score=28.80 Aligned_cols=64 Identities=8% Similarity=0.051 Sum_probs=49.1
Q ss_pred CHHHHHHHH---HHHHhcCchhHHHHHHHHHhhcCCC-CchhHHHHHHHHH-HcCCchHHHHHHHHHHh
Q 010405 307 DNVIWGTLL---GACRVHRNAEMGQRIGNMLIESDQN-HDGRYILLSNIYV-ETLKGENAEEVRKTMRK 370 (511)
Q Consensus 307 ~~~~~~~ll---~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 370 (511)
|...|.++. ..+.+.|.+..|.++.+-+..++|. ||-.-...++.|+ ++++++--+++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 445555544 5578899999999999999999998 7777777788775 77778877777776544
No 375
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=63.10 E-value=63 Score=25.83 Aligned_cols=42 Identities=12% Similarity=-0.010 Sum_probs=35.0
Q ss_pred HHHHHHHHHhh--cCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 010405 326 MGQRIGNMLIE--SDQNHDGRYILLSNIYVETLKGENAEEVRKT 367 (511)
Q Consensus 326 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 367 (511)
.+.++|+.|.. +....+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 88888888888 5666778888999999999999999999864
No 376
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=63.02 E-value=2.5e+02 Score=31.30 Aligned_cols=259 Identities=14% Similarity=0.021 Sum_probs=151.4
Q ss_pred HHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCChhHHHHHHHHHHhcCCH-HHHHHHHhhCCCCChhHHHHH
Q 010405 32 WVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSV-DDACRVFNQMPKRSLVSWVVL 110 (511)
Q Consensus 32 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~l 110 (511)
.+...+..+|+..-...+..+.+.+..+....+...+..+|..+-...+.++.+.+.. .....+...+..+|...-...
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A 704 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAA 704 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHH
Confidence 4455566788888888888888888765445555555567777766666666555322 112222233344566555555
Q ss_pred HHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 010405 111 ISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSI 190 (511)
Q Consensus 111 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 190 (511)
+.++...+..+ .. .+-.+.+ .+|...-...+.++...+..+. +..+. -.++..+-...+.++...+..
T Consensus 705 ~~aL~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~~~~ 772 (897)
T PRK13800 705 LDVLRALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATLGAG 772 (897)
T ss_pred HHHHHhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHhccc
Confidence 55555443221 12 2333332 4566666666777766655432 22222 245667777777777777654
Q ss_pred HH-HHH-HHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchh
Q 010405 191 DL-AMQ-VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD 268 (511)
Q Consensus 191 ~~-A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 268 (511)
+. +.. +...+.++|...-.+.+.++...|..+.+...+..+.. .++...=...+.++...+.. ++...+..+.+
T Consensus 773 ~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~~-~a~~~L~~~L~ 848 (897)
T PRK13800 773 GAPAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAAD-VAVPALVEALT 848 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhcccc-chHHHHHHHhc
Confidence 43 233 33444567877788888899998887666555655554 34555555677777777753 45555555554
Q ss_pred hcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHH
Q 010405 269 VHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVI 310 (511)
Q Consensus 269 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~ 310 (511)
.|+..+-...+.++.+.+....+...+...-..+|...
T Consensus 849 ----D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D~d~~V 886 (897)
T PRK13800 849 ----DPHLDVRKAAVLALTRWPGDPAARDALTTALTDSDADV 886 (897)
T ss_pred ----CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCHHH
Confidence 47777777777788775333445555544422444443
No 377
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=62.53 E-value=26 Score=25.79 Aligned_cols=37 Identities=8% Similarity=0.139 Sum_probs=18.9
Q ss_pred cCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHH
Q 010405 86 FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEA 123 (511)
Q Consensus 86 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 123 (511)
.|+.+.|.++++.++ +.+-.|...+.++-..|.-+-|
T Consensus 49 ~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 49 HGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred cCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 355555555555555 4445555555555555444333
No 378
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.38 E-value=2e+02 Score=29.92 Aligned_cols=150 Identities=13% Similarity=-0.001 Sum_probs=77.1
Q ss_pred HcCChHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHhccC-----CHHHHHHHHHHchhhcCCCCCHhHHHHHHH
Q 010405 217 MNGHSIEAFELFENMKS-------KGISPDSISYIAVLSACSHLG-----WVEKGFYYFHSMFDVHGIKPELDHYACMVD 284 (511)
Q Consensus 217 ~~g~~~~A~~~~~~m~~-------~g~~p~~~t~~~ll~~~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 284 (511)
...+.+.|+.+|+.+.. .| +......+..+|.+.. +.+.|..++....+ .| .|+.......+.
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~-~g-~~~a~~~lg~~~ 335 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE-LG-NPDAQYLLGVLY 335 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh-cC-CchHHHHHHHHH
Confidence 34566666666666654 33 2223444555555432 45667777777665 33 233333222222
Q ss_pred HHHH-cCCHHHHHHHHHhCCCC--CCHHHHHHHHHH--HHhcCchhHHHHHHHHHhhcCCCCchhHHHH--HHHHHHcCC
Q 010405 285 LLGR-AGLLEEAENFIASMPMK--PDNVIWGTLLGA--CRVHRNAEMGQRIGNMLIESDQNHDGRYILL--SNIYVETLK 357 (511)
Q Consensus 285 ~~~~-~g~~~~A~~~~~~~~~~--p~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l--~~~~~~~g~ 357 (511)
.... ..+...|.++|...... ++...+.+++-. .....+.+.|...++++.+.++. .+...+ ...+.. ++
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~--~A~~~~~~~~~~g~-~~ 412 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNP--SAAYLLGAFYEYGV-GR 412 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccCh--hhHHHHHHHHHHcc-cc
Confidence 2222 23466777777766222 222222222211 12345677888888888876632 223333 333333 77
Q ss_pred chHHHHHHHHHHhCCCc
Q 010405 358 GENAEEVRKTMRKRKIK 374 (511)
Q Consensus 358 ~~~A~~~~~~m~~~g~~ 374 (511)
++.+.-.+..+.+.|..
T Consensus 413 ~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 413 YDTALALYLYLAELGYE 429 (552)
T ss_pred ccHHHHHHHHHHHhhhh
Confidence 77777777777666653
No 379
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=61.35 E-value=48 Score=25.67 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=21.0
Q ss_pred ehHHHHHHHHHcCChHHHHHHHHHHHh
Q 010405 207 AYTSAIFGLAMNGHSIEAFELFENMKS 233 (511)
Q Consensus 207 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 233 (511)
-|..++..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477777788888888888888887765
No 380
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=61.32 E-value=32 Score=35.02 Aligned_cols=51 Identities=10% Similarity=-0.027 Sum_probs=23.1
Q ss_pred HHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 010405 318 CRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTM 368 (511)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 368 (511)
..+.|-...|-.++.+.+.+....+-++..++++|....+.+.|++.++..
T Consensus 652 ~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a 702 (886)
T KOG4507|consen 652 LIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQA 702 (886)
T ss_pred HHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHH
Confidence 333334444444444444443334444444444444444455544444433
No 381
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=61.20 E-value=1.1e+02 Score=26.50 Aligned_cols=95 Identities=9% Similarity=0.017 Sum_probs=54.9
Q ss_pred HHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCC----
Q 010405 197 FHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGI---- 272 (511)
Q Consensus 197 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---- 272 (511)
.++..++..+.|-....+-++.-+.+++-+.|-- ..=.+++..|-+.-++.+++++++.|.+ ..+
T Consensus 99 tkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LG----------RiGiS~m~~Yhk~~qW~KGrkvLd~l~e-l~i~ft~ 167 (233)
T PF14669_consen 99 TKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLG----------RIGISLMYSYHKTLQWSKGRKVLDKLHE-LQIHFTS 167 (233)
T ss_pred HhcccccCCCCHHHHHHHHhcCCccchhhhhhhh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhhhhh
Confidence 3333445556666666666666555554443311 1123455667777778888888887765 222
Q ss_pred ----------CCCHhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 010405 273 ----------KPELDHYACMVDLLGRAGLLEEAENFIASM 302 (511)
Q Consensus 273 ----------~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 302 (511)
.+.-..-|.....+.+.|.++.|+.++++-
T Consensus 168 LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 168 LKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred ccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 123334555666677777777777776654
No 382
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=61.04 E-value=20 Score=25.79 Aligned_cols=46 Identities=9% Similarity=-0.075 Sum_probs=33.4
Q ss_pred hcCchhHHHHHHHHHhhcCCCCch---hHHHHHHHHHHcCCchHHHHHH
Q 010405 320 VHRNAEMGQRIGNMLIESDQNHDG---RYILLSNIYVETLKGENAEEVR 365 (511)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~ 365 (511)
...+.+.|+..++.+++..++.+. ++..|+.+|+..|++.++++.-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556678888888888886554443 4446778888888888877653
No 383
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=60.59 E-value=33 Score=31.71 Aligned_cols=58 Identities=19% Similarity=0.223 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCC---CeeehHHHHHHHHHcCChHHHHHHHHHHHh
Q 010405 176 LCAALIDMYAKCGSIDLAMQVFHSYGDK---DVSAYTSAIFGLAMNGHSIEAFELFENMKS 233 (511)
Q Consensus 176 ~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 233 (511)
+.+.....|..+|.+.+|.++-++...- +...|-.++..++..|+--.|.+.+.++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4455667788888888888888877653 445677888888888887777777777653
No 384
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=60.03 E-value=36 Score=29.56 Aligned_cols=35 Identities=11% Similarity=0.027 Sum_probs=17.2
Q ss_pred CCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCC
Q 010405 305 KPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQ 339 (511)
Q Consensus 305 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 339 (511)
.|++.++..++.++...|+.++|.+..+++....|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34444444444444445555555555555444444
No 385
>PF13934 ELYS: Nuclear pore complex assembly
Probab=59.51 E-value=1.3e+02 Score=26.92 Aligned_cols=70 Identities=20% Similarity=0.196 Sum_probs=30.6
Q ss_pred HHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010405 246 VLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACR 319 (511)
Q Consensus 246 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~ 319 (511)
++.++...|+.+.|..+++.+.- ...+......++.. ..++.+.||..+.+.....-....|..++..+.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCL 183 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHH
Confidence 44444445556666555554421 11112222222222 444566666655555432111234555555444
No 386
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=59.40 E-value=1.6e+02 Score=27.83 Aligned_cols=82 Identities=17% Similarity=0.057 Sum_probs=56.3
Q ss_pred HHHHHHHHHHchhhcCC---CCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHH
Q 010405 256 VEKGFYYFHSMFDVHGI---KPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGN 332 (511)
Q Consensus 256 ~~~a~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 332 (511)
.+.|.+.|+.......- ..++.....+.....+.|..++-..+++.....++...-..++.+.....+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 56788888888762111 335556666777777888877666666666555678888889999988899999999999
Q ss_pred HHhhc
Q 010405 333 MLIES 337 (511)
Q Consensus 333 ~~~~~ 337 (511)
.+...
T Consensus 226 ~~l~~ 230 (324)
T PF11838_consen 226 LLLSN 230 (324)
T ss_dssp HHHCT
T ss_pred HHcCC
Confidence 98884
No 387
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=58.71 E-value=1.5e+02 Score=31.46 Aligned_cols=118 Identities=12% Similarity=0.033 Sum_probs=59.7
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCH
Q 010405 215 LAMNGHSIEAFELFENMKSKGISPD--SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLL 292 (511)
Q Consensus 215 ~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 292 (511)
+..-|+-++|-.+..+|.... .|- ..-...+..+|+-.|+.....+++.-... ....|+.-+..+.-++.-..++
T Consensus 511 L~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs--D~nDDVrRaAVialGFVl~~dp 587 (929)
T KOG2062|consen 511 LVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS--DVNDDVRRAAVIALGFVLFRDP 587 (929)
T ss_pred HHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhccccc--ccchHHHHHHHHHheeeEecCh
Confidence 444566667777777776542 221 11122344566666766666666655443 3334444454444455555566
Q ss_pred HHHHHHHHhC--CCCCCHHHHHHHH--HHHHhcCchhHHHHHHHHHhh
Q 010405 293 EEAENFIASM--PMKPDNVIWGTLL--GACRVHRNAEMGQRIGNMLIE 336 (511)
Q Consensus 293 ~~A~~~~~~~--~~~p~~~~~~~ll--~~~~~~g~~~~a~~~~~~~~~ 336 (511)
+....+.+-+ ...|.+..-.++. -+|.-.| ..+|+.+++.+..
T Consensus 588 ~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 588 EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTG-LKEAINLLEPLTS 634 (929)
T ss_pred hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCC-cHHHHHHHhhhhc
Confidence 5555555544 2334443333332 2233333 3556666666655
No 388
>PRK13342 recombination factor protein RarA; Reviewed
Probab=58.51 E-value=2e+02 Score=28.61 Aligned_cols=43 Identities=21% Similarity=0.113 Sum_probs=25.9
Q ss_pred hHHHHHHHHH---cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010405 208 YTSAIFGLAM---NGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250 (511)
Q Consensus 208 ~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 250 (511)
+..+++++.+ .++.+.|+.++..|.+.|..|....-..+..++
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4444555444 467778888888888777766654444333333
No 389
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=58.22 E-value=91 Score=31.73 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=18.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcC
Q 010405 179 ALIDMYAKCGSIDLAMQVFHSYG 201 (511)
Q Consensus 179 ~li~~y~~~g~~~~A~~~~~~~~ 201 (511)
.|+.-|.+.+++++|..++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 46667888888888888888775
No 390
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=57.91 E-value=2.5e+02 Score=29.63 Aligned_cols=159 Identities=12% Similarity=0.030 Sum_probs=93.4
Q ss_pred ChhHHHHHHHHHH-HcCChHHHHHHHccCCC----CCh-----hHHHHHHHHHHhcCCHHHHHHHHhhCCCC----Chh-
Q 010405 41 DVVSWNSMINGYV-RNGEILEGLKLFDKMPQ----RND-----VSWNSILGGLVRFGSVDDACRVFNQMPKR----SLV- 105 (511)
Q Consensus 41 ~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~----~~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~- 105 (511)
+..++-.+...+. ...++++|...+++... ++. .....++..|.+.+... |....++..+. ...
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 4455666666665 67889999999987742 221 12234566777777666 88887775431 111
Q ss_pred ---HHHHH-HHHHHHCCChhHHHHHHHHHHHCC---CCCCHhHHHHHHHHHH--hcCCHHHHHHHHHHHHHcCC------
Q 010405 106 ---SWVVL-ISGFAQNGRPKEALALFREMQSLD---LEPNSAILVSLLSACA--QLGALDYGNWVYSYIQKKCI------ 170 (511)
Q Consensus 106 ---~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~------ 170 (511)
.+.-+ +..+...+++..|++.++.+.... ..|-...+..++.+.. ..+..+.+.+..+.+.....
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~ 216 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDP 216 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCC
Confidence 22223 333334479999999998886532 2344455555555554 34556667776666643221
Q ss_pred ---CccHHHHHHHHHHHH--hcCCHHHHHHHHHhc
Q 010405 171 ---KLDSILCAALIDMYA--KCGSIDLAMQVFHSY 200 (511)
Q Consensus 171 ---~~~~~~~~~li~~y~--~~g~~~~A~~~~~~~ 200 (511)
.|...++..+++.++ ..|+++.+...++.+
T Consensus 217 ~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 217 SVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334566666666654 467766666555443
No 391
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=57.34 E-value=46 Score=33.95 Aligned_cols=98 Identities=12% Similarity=0.060 Sum_probs=67.4
Q ss_pred cCCHHHHHHHHHHchhhcCCCCC--HhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCchhHHH
Q 010405 253 LGWVEKGFYYFHSMFDVHGIKPE--LDHYACMVDLLGRAGLLEEAENFIASM-PM-KPDNVIWGTLLGACRVHRNAEMGQ 328 (511)
Q Consensus 253 ~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~ 328 (511)
.|+...|...+....- ..|. ....-.|...+.+.|...+|..++.+. .+ ...+.++..+..++....+++.|+
T Consensus 620 ~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred cCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 3566666666655543 2232 223445566666777777787776554 22 234567777888899999999999
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHH
Q 010405 329 RIGNMLIESDQNHDGRYILLSNIYV 353 (511)
Q Consensus 329 ~~~~~~~~~~p~~~~~~~~l~~~~~ 353 (511)
+.++.+++..|+++..-..|..+-+
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999999888777765544
No 392
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=57.14 E-value=1e+02 Score=25.41 Aligned_cols=78 Identities=15% Similarity=0.227 Sum_probs=52.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---------CChhHHHHHHHHHHHCCC-hhHHHHHHHHHHHCCCCCCHhHHHHH
Q 010405 76 WNSILGGLVRFGSVDDACRVFNQMPK---------RSLVSWVVLISGFAQNGR-PKEALALFREMQSLDLEPNSAILVSL 145 (511)
Q Consensus 76 ~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~t~~~l 145 (511)
.|.++.-.+..+++.....+++.+.. .+..+|+.++.+..+..- ---+..+|.-|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 45555555556666666666665531 344678888888866555 33456778888887788888888888
Q ss_pred HHHHHhcC
Q 010405 146 LSACAQLG 153 (511)
Q Consensus 146 l~~~~~~~ 153 (511)
+.++.+..
T Consensus 122 i~~~l~g~ 129 (145)
T PF13762_consen 122 IKAALRGY 129 (145)
T ss_pred HHHHHcCC
Confidence 88876653
No 393
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=55.93 E-value=60 Score=26.58 Aligned_cols=63 Identities=11% Similarity=0.009 Sum_probs=45.1
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCC
Q 010405 292 LEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLK 357 (511)
Q Consensus 292 ~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 357 (511)
-+.|.++.+-|+ .....-.........|++..|..+.+.+...+|++...-...+++|.+.|.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 456777888885 333444455667789999999999999999999998887777777766553
No 394
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=55.78 E-value=1.5e+02 Score=26.71 Aligned_cols=81 Identities=10% Similarity=-0.071 Sum_probs=47.0
Q ss_pred HHhcCCHHHHHHHHHhcCC--CCee-ehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHhccCCHHHH
Q 010405 184 YAKCGSIDLAMQVFHSYGD--KDVS-AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYI-AVLSACSHLGWVEKG 259 (511)
Q Consensus 184 y~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~g~~~~a 259 (511)
|....+++.|+..|.+... |++. -|+.-+..+.+..+++.+..--++.++ +.||.+--. .+.........+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 4445667777776665543 5443 355566667777777766665555544 456654322 233345556666777
Q ss_pred HHHHHHc
Q 010405 260 FYYFHSM 266 (511)
Q Consensus 260 ~~~~~~~ 266 (511)
+..+.+.
T Consensus 98 I~~Lqra 104 (284)
T KOG4642|consen 98 IKVLQRA 104 (284)
T ss_pred HHHHHHH
Confidence 7666655
No 395
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=55.66 E-value=1.1e+02 Score=24.56 Aligned_cols=58 Identities=12% Similarity=0.241 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 010405 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD-SILCAALIDMYAKCGSIDLAMQVFHS 199 (511)
Q Consensus 140 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~ 199 (511)
.-|..+--.|+..-+ .+.++|+.|...|+... ...|......+.+.|++++|.++|+.
T Consensus 66 ~RylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 66 ERYLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 334444444444333 78888888888776544 45677788888888888888888864
No 396
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=55.56 E-value=82 Score=23.26 Aligned_cols=38 Identities=13% Similarity=0.080 Sum_probs=25.7
Q ss_pred hcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHH
Q 010405 186 KCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEA 224 (511)
Q Consensus 186 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 224 (511)
..|+.+.|.+++..+. +..-.|...+.++-..|+..-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4567777777777777 6666777777777766665444
No 397
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=55.42 E-value=2.2e+02 Score=28.24 Aligned_cols=236 Identities=11% Similarity=0.011 Sum_probs=133.4
Q ss_pred HHHHHHHcCChHHHHHHHccCCC--CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHH
Q 010405 48 MINGYVRNGEILEGLKLFDKMPQ--RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALA 125 (511)
Q Consensus 48 li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 125 (511)
-+.++...| ..+.+.+-.... ++...+.....++....+......+.+.+..++.......+.++...+...-.-.
T Consensus 44 hLdgL~~~G--~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~ 121 (410)
T TIGR02270 44 HVDGLVLAG--KAATELLVSALAEADEPGRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPW 121 (410)
T ss_pred HHHHHHHhh--HhHHHHHHHHHhhCCChhHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHH
Confidence 366777777 455665544442 3344444433333333333335566666666666667777788777776554444
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCe
Q 010405 126 LFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV 205 (511)
Q Consensus 126 ~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~ 205 (511)
+..+.+. ++.......+.++...+. + +...+..+.+ .++..+-..-+.++...++.+-.-.+-.-....|.
T Consensus 122 -L~~~L~~---~~p~vR~aal~al~~r~~-~-~~~~L~~~L~---d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~ 192 (410)
T TIGR02270 122 -LEPLLAA---SEPPGRAIGLAALGAHRH-D-PGPALEAALT---HEDALVRAAALRALGELPRRLSESTLRLYLRDSDP 192 (410)
T ss_pred -HHHHhcC---CChHHHHHHHHHHHhhcc-C-hHHHHHHHhc---CCCHHHHHHHHHHHHhhccccchHHHHHHHcCCCH
Confidence 4444432 344445555566655442 2 2333333333 45666666667777777765444443334445677
Q ss_pred eehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHH
Q 010405 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL 285 (511)
Q Consensus 206 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 285 (511)
..-..-+.+....|. .+|...+..... .|+......+.......| -+++...+..+.++ +. +-...+.+
T Consensus 193 ~VR~aA~~al~~lG~-~~A~~~l~~~~~---~~g~~~~~~l~~~lal~~-~~~a~~~L~~ll~d----~~--vr~~a~~A 261 (410)
T TIGR02270 193 EVRFAALEAGLLAGS-RLAWGVCRRFQV---LEGGPHRQRLLVLLAVAG-GPDAQAWLRELLQA----AA--TRREALRA 261 (410)
T ss_pred HHHHHHHHHHHHcCC-HhHHHHHHHHHh---ccCccHHHHHHHHHHhCC-chhHHHHHHHHhcC----hh--hHHHHHHH
Confidence 666777777788887 677776665433 223333333333333223 33677777766652 33 55677888
Q ss_pred HHHcCCHHHHHHHHHhCCCC
Q 010405 286 LGRAGLLEEAENFIASMPMK 305 (511)
Q Consensus 286 ~~~~g~~~~A~~~~~~~~~~ 305 (511)
+++.|+...+.-+++.|...
T Consensus 262 lG~lg~p~av~~L~~~l~d~ 281 (410)
T TIGR02270 262 VGLVGDVEAAPWCLEAMREP 281 (410)
T ss_pred HHHcCCcchHHHHHHHhcCc
Confidence 88999998888888888633
No 398
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=55.18 E-value=97 Score=23.99 Aligned_cols=27 Identities=19% Similarity=0.437 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHH
Q 010405 106 SWVVLISGFAQNGRPKEALALFREMQS 132 (511)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 132 (511)
-|..|+..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 478888888899999999998888766
No 399
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=54.95 E-value=95 Score=24.80 Aligned_cols=57 Identities=14% Similarity=0.245 Sum_probs=40.2
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 010405 124 LALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181 (511)
Q Consensus 124 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 181 (511)
.+-++.+...++.|++......+++|.+.+++..|..+++-++.. ..+...+|-.++
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 344555556678889988899999999999999999998887654 233333454443
No 400
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=54.93 E-value=1.2e+02 Score=24.97 Aligned_cols=49 Identities=18% Similarity=0.300 Sum_probs=27.2
Q ss_pred CeeehHHHHHHHHHcCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010405 204 DVSAYTSAIFGLAMNGH-SIEAFELFENMKSKGISPDSISYIAVLSACSH 252 (511)
Q Consensus 204 ~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 252 (511)
+-.+|.+++.+..+..- ---+..+|.-|++.+.+++..-|..++.+|.+
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 34455566655544333 22445566666665566666666666666554
No 401
>PRK10941 hypothetical protein; Provisional
Probab=54.93 E-value=65 Score=29.77 Aligned_cols=66 Identities=9% Similarity=-0.082 Sum_probs=48.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchh
Q 010405 279 YACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGR 344 (511)
Q Consensus 279 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 344 (511)
.+.+-.+|.+.++++.|++..+.+ .+.| |+.-+.--.-.|.+.|.+..|..-++..++..|+++.+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 344556778888888888888877 4445 34456666666888888888888888888888877654
No 402
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=54.38 E-value=83 Score=27.95 Aligned_cols=58 Identities=10% Similarity=-0.086 Sum_probs=36.3
Q ss_pred HHHHHhcCchh-------HHHHHHHHHhhc--CCC----CchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 315 LGACRVHRNAE-------MGQRIGNMLIES--DQN----HDGRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 315 l~~~~~~g~~~-------~a~~~~~~~~~~--~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
.-.|+..|+.+ .|.+.|+++.+. .|. .......++.++.+.|+.++|.+.+.++...+
T Consensus 125 AWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 125 AWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 33455555533 455555555542 221 23456678888889999999999998887543
No 403
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=53.94 E-value=52 Score=28.53 Aligned_cols=51 Identities=20% Similarity=0.051 Sum_probs=32.8
Q ss_pred ccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 010405 252 HLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM 302 (511)
Q Consensus 252 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 302 (511)
...+.+......+.+.+.....|++.+|..++.++...|+.++|.+..+++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555444444444443345677777777777777777777777777766
No 404
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=53.17 E-value=11 Score=37.13 Aligned_cols=95 Identities=7% Similarity=-0.055 Sum_probs=65.9
Q ss_pred HHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHH-HHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcC
Q 010405 246 VLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHY-ACMVDLLGRAGLLEEAENFIASM-PMKPDNV-IWGTLLGACRVHR 322 (511)
Q Consensus 246 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g 322 (511)
-+......+.++.|..++.++.+ +.|+...| ..=..++.+.+++..|..=+..+ ...|.-. .|..=..+|...+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 34455667888999999999887 66764443 33347788888888887655544 4455432 3333345677778
Q ss_pred chhHHHHHHHHHhhcCCCCch
Q 010405 323 NAEMGQRIGNMLIESDQNHDG 343 (511)
Q Consensus 323 ~~~~a~~~~~~~~~~~p~~~~ 343 (511)
.+.+|...|+....+.|+++.
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPD 107 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHH
Confidence 888899999998889998754
No 405
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=53.13 E-value=1.5e+02 Score=25.67 Aligned_cols=57 Identities=21% Similarity=0.250 Sum_probs=39.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC--------------CccHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 010405 143 VSLLSACAQLGALDYGNWVYSYIQKKCI--------------KLDSILCAALIDMYAKCGSIDLAMQVFHS 199 (511)
Q Consensus 143 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~--------------~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 199 (511)
.+++..|-+.-++.+++.+++.+-+..+ .+.-...|.-...+.++|.+|.|..++++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 3456667777788888888877765322 23345667777788888888888888773
No 406
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=52.44 E-value=29 Score=32.30 Aligned_cols=38 Identities=18% Similarity=0.262 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHH
Q 010405 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143 (511)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 143 (511)
-||..|..-.+.||.++|+.++++.++.|+.--..+|.
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 47788999999999999999999999888764444443
No 407
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.34 E-value=19 Score=38.36 Aligned_cols=46 Identities=17% Similarity=0.167 Sum_probs=25.7
Q ss_pred HcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhh
Q 010405 288 RAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIE 336 (511)
Q Consensus 288 ~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (511)
.+|+++.|++.-..+. |..+|..|......+|+.+-|+..|++...
T Consensus 655 e~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 655 ECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred hcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 4555665555555543 455566666555555666555555555444
No 408
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=51.39 E-value=38 Score=24.86 Aligned_cols=53 Identities=15% Similarity=0.140 Sum_probs=30.6
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHH
Q 010405 71 RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEA 123 (511)
Q Consensus 71 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 123 (511)
..+.+....-..-+...+.+.|.++++.++.++..+|.+...++...|...-|
T Consensus 28 ~~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 28 RGVFTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred cCCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 33444443334444455566666777766666666666666666666654443
No 409
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=51.34 E-value=2.4e+02 Score=27.43 Aligned_cols=98 Identities=10% Similarity=0.035 Sum_probs=51.9
Q ss_pred HHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHH-HcCCHHHHHHHHHhCCC---------CCCHHHHHHHHH
Q 010405 247 LSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLG-RAGLLEEAENFIASMPM---------KPDNVIWGTLLG 316 (511)
Q Consensus 247 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~---------~p~~~~~~~ll~ 316 (511)
+..+.+.|-+..|.++.+.+.. ....-|+.....+|+.|+ ++++++--.++.+.... -|+ ..|+.-+.
T Consensus 110 i~~L~~RG~~rTAlE~~KlLls-Ldp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn-~a~S~aLA 187 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLS-LDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN-FAFSIALA 187 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHh-cCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc-HHHHHHHH
Confidence 3355667777777777777765 222223444445566553 56666666666655421 121 22333232
Q ss_pred HHHhcCch---------------hHHHHHHHHHhhcCCCCchhHHHHHH
Q 010405 317 ACRVHRNA---------------EMGQRIGNMLIESDQNHDGRYILLSN 350 (511)
Q Consensus 317 ~~~~~g~~---------------~~a~~~~~~~~~~~p~~~~~~~~l~~ 350 (511)
-+ ..++. +.|...+.+++...| .+...|..
T Consensus 188 ~~-~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP---~vl~~Ll~ 232 (360)
T PF04910_consen 188 YF-RLEKEESSQSSAQSGRSENSESADEALQKAILRFP---WVLVPLLD 232 (360)
T ss_pred HH-HhcCccccccccccccccchhHHHHHHHHHHHHhH---HHHHHHHH
Confidence 22 23333 778888888777766 34444443
No 410
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=49.36 E-value=19 Score=28.96 Aligned_cols=33 Identities=27% Similarity=0.401 Sum_probs=24.8
Q ss_pred HHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 010405 115 AQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149 (511)
Q Consensus 115 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 149 (511)
-..|.-.+|-.+|++|+..|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3456677888999999999988875 66666543
No 411
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=49.31 E-value=1.9e+02 Score=25.73 Aligned_cols=75 Identities=13% Similarity=0.056 Sum_probs=47.7
Q ss_pred hHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHchhh-cCCCCCHhHHHHHHH
Q 010405 208 YTSAIFGLAMNGHSIEAFELFENMKSKGISP-DSISYIAVLSACSHLGWVEKGFYYFHSMFDV-HGIKPELDHYACMVD 284 (511)
Q Consensus 208 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~p~~~~~~~li~ 284 (511)
.+.-++.+.+.+...+|+...++-.+. +| |..+-..++..++-.|++++|..-++...+. ....+....|..++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 345566777788888888888777665 34 4445556777788888888888776665540 012223445555554
No 412
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=48.76 E-value=2.7e+02 Score=27.29 Aligned_cols=53 Identities=9% Similarity=0.074 Sum_probs=34.0
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHh--ccCCHHHHHHHHHHchh
Q 010405 215 LAMNGHSIEAFELFENMKSKGISPDSI--SYIAVLSACS--HLGWVEKGFYYFHSMFD 268 (511)
Q Consensus 215 ~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~--~~g~~~~a~~~~~~~~~ 268 (511)
+...+++..|.++|..+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34677888888888888776 555444 3333334432 35567788888887765
No 413
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=48.63 E-value=4e+02 Score=29.12 Aligned_cols=215 Identities=13% Similarity=-0.018 Sum_probs=114.1
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCccHH-------HHHHHHHH-HHhcCCHHHHHHHHHhcCC--------CCeeehHHHHH
Q 010405 150 AQLGALDYGNWVYSYIQKKCIKLDSI-------LCAALIDM-YAKCGSIDLAMQVFHSYGD--------KDVSAYTSAIF 213 (511)
Q Consensus 150 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~~-y~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~ 213 (511)
....++++|..+..++...-.+|+.. .+++|-.. ....|+++.|.++-+.... ..++.+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45678899999888887653332211 23332211 2336888888877765443 35566777788
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCHHHH---HHHHH--HHhccCCH--HHHHHHHHHchhhcCC-C----CCHhHHHH
Q 010405 214 GLAMNGHSIEAFELFENMKSKGISPDSISY---IAVLS--ACSHLGWV--EKGFYYFHSMFDVHGI-K----PELDHYAC 281 (511)
Q Consensus 214 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~--~~~~~g~~--~~a~~~~~~~~~~~~~-~----p~~~~~~~ 281 (511)
+..-.|++++|..+.++..+..-.-+...| ..+.. .+...|.. .+....|......... . +-...+..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 888899999999887776543222233322 22221 24455633 2333333333321111 1 11234445
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-----CCCCCHH-HH---HHHHHHHHhcCchhHHHHHHHHHhhc--CCCCchhHH---H
Q 010405 282 MVDLLGRAGLLEEAENFIASM-----PMKPDNV-IW---GTLLGACRVHRNAEMGQRIGNMLIES--DQNHDGRYI---L 347 (511)
Q Consensus 282 li~~~~~~g~~~~A~~~~~~~-----~~~p~~~-~~---~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~---~ 347 (511)
+..++.+ ++.+..-...- ...|... .+ ..|.......|++++|.....++..+ ++.....|. .
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 5555555 34333322221 1123222 22 25567788899999999999998883 332112222 1
Q ss_pred HHHH--HHHcCCchHHHHHHHH
Q 010405 348 LSNI--YVETLKGENAEEVRKT 367 (511)
Q Consensus 348 l~~~--~~~~g~~~~A~~~~~~ 367 (511)
.+.. -...|+...+...+.+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 2222 2355777777766654
No 414
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=48.35 E-value=1.6e+02 Score=27.63 Aligned_cols=18 Identities=17% Similarity=0.165 Sum_probs=7.9
Q ss_pred CCCHHHHHHHHHHHhccC
Q 010405 237 SPDSISYIAVLSACSHLG 254 (511)
Q Consensus 237 ~p~~~t~~~ll~~~~~~g 254 (511)
+|+..+-......+...|
T Consensus 220 Ppnkrs~E~Fak~Ft~ag 237 (412)
T KOG2297|consen 220 PPNKRSVEHFAKYFTDAG 237 (412)
T ss_pred CCcchhHHHHHHHHhHhh
Confidence 445444444444444333
No 415
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=47.60 E-value=1.3e+02 Score=29.68 Aligned_cols=83 Identities=14% Similarity=0.207 Sum_probs=45.1
Q ss_pred HHHHHHHcCChHHHHHHHccCCCCCh----------------hHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-------
Q 010405 48 MINGYVRNGEILEGLKLFDKMPQRND----------------VSWNSILGGLVRFGSVDDACRVFNQMPK--R------- 102 (511)
Q Consensus 48 li~~~~~~g~~~~A~~~~~~m~~~~~----------------~~~~~li~~~~~~g~~~~A~~~~~~~~~--~------- 102 (511)
++.++....+..+-++..+....|+. ++.-.|++.++-.|++..|+++++.+.- +
T Consensus 81 vL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~ 160 (404)
T PF10255_consen 81 VLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVP 160 (404)
T ss_pred HHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCc
Confidence 34455556666666665555443322 2334455666666777766666665531 1
Q ss_pred --ChhHHHHHHHHHHHCCChhHHHHHHHHH
Q 010405 103 --SLVSWVVLISGFAQNGRPKEALALFREM 130 (511)
Q Consensus 103 --~~~~~~~li~~~~~~g~~~~A~~~~~~m 130 (511)
.+.++.-+.-+|.-.+++.+|.+.|...
T Consensus 161 ~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 161 ACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred chheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234455555566666666666666544
No 416
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=46.44 E-value=3.3e+02 Score=27.58 Aligned_cols=64 Identities=19% Similarity=0.087 Sum_probs=47.9
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHH-HHHcCChHHHHHHHccCCC
Q 010405 7 FAYDVFVKNSLIQFYSVCGRVRDARWVFDESD---DLDVVSWNSMING-YVRNGEILEGLKLFDKMPQ 70 (511)
Q Consensus 7 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~ 70 (511)
+..|+..|..-+..+-+.+.+.+...+|.+|. +.++..|-....- |-.+-+++.|..+|.+..+
T Consensus 101 f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 101 FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 44588899999999888888999999999876 3456677555443 4444558888888887764
No 417
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.43 E-value=2.2e+02 Score=25.64 Aligned_cols=89 Identities=11% Similarity=0.073 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHHchhhcCCCC-CHh---HHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHHHHHH---HHHH--H-Hh
Q 010405 254 GWVEKGFYYFHSMFDVHGIKP-ELD---HYACMVDLLGRAGLLEEAENFIASM---PMKPDNVIWGT---LLGA--C-RV 320 (511)
Q Consensus 254 g~~~~a~~~~~~~~~~~~~~p-~~~---~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~---ll~~--~-~~ 320 (511)
.++++|+..|+...+-+.... +.. .+.-+.+.-+..+++.+|+++|++. ....+..-|.. ++.+ | .-
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 455666666666554222111 111 2222333345678889999998876 23333334432 3322 2 23
Q ss_pred cCchhHHHHHHHHHhhcCCCCc
Q 010405 321 HRNAEMGQRIGNMLIESDQNHD 342 (511)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~p~~~ 342 (511)
..+.-.+...+++-.++.|.-.
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred cccHHHHHHHHHHHHhcCCccc
Confidence 3677778888888888888643
No 418
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=45.40 E-value=1.3e+02 Score=22.47 Aligned_cols=21 Identities=14% Similarity=-0.057 Sum_probs=14.2
Q ss_pred HHHHhcCchhHHHHHHHHHhh
Q 010405 316 GACRVHRNAEMGQRIGNMLIE 336 (511)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~ 336 (511)
......|++++|...++++++
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 335666777777777777766
No 419
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=45.02 E-value=71 Score=23.86 Aligned_cols=53 Identities=6% Similarity=-0.098 Sum_probs=36.3
Q ss_pred HHhcCchhHHHHHHHHHhhcCCC----C-----chhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 318 CRVHRNAEMGQRIGNMLIESDQN----H-----DGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~p~----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
..+.|++..|.+.+.+..+.... . ......++..+...|++++|.+.+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35667888887777666662111 1 12344677788999999999999987764
No 420
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.95 E-value=3.7e+02 Score=27.76 Aligned_cols=123 Identities=15% Similarity=0.071 Sum_probs=0.0
Q ss_pred HhccCCHHHHHHHHHHchhhcCC----------CCCHhHHHHHHHHHHHcCCHHHHHHHHHhC----------CCCCCH-
Q 010405 250 CSHLGWVEKGFYYFHSMFDVHGI----------KPELDHYACMVDLLGRAGLLEEAENFIASM----------PMKPDN- 308 (511)
Q Consensus 250 ~~~~g~~~~a~~~~~~~~~~~~~----------~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----------~~~p~~- 308 (511)
+.+...++++..-|......+.. +-.+.+...+.+++-.+|+.+-|.+++++. .+.|..
T Consensus 248 ~~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg 327 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSG 327 (665)
T ss_pred eecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccc
Q ss_pred ---------------HHHHHHHHHHHhcCchhHHHHHHHHHhhcCCC-CchhHHHHHHHHH-HcCCchHHHHHHHHHHhC
Q 010405 309 ---------------VIWGTLLGACRVHRNAEMGQRIGNMLIESDQN-HDGRYILLSNIYV-ETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 309 ---------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~~ 371 (511)
.+...-+..+.+.|.+..|.+..+.+..++|. ||.....+++.|+ ++.+++--+++++.....
T Consensus 328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~ 407 (665)
T KOG2422|consen 328 NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENM 407 (665)
T ss_pred cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q ss_pred C
Q 010405 372 K 372 (511)
Q Consensus 372 g 372 (511)
+
T Consensus 408 n 408 (665)
T KOG2422|consen 408 N 408 (665)
T ss_pred c
No 421
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=44.93 E-value=2.5e+02 Score=25.80 Aligned_cols=158 Identities=15% Similarity=0.042 Sum_probs=72.3
Q ss_pred hcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHH----HHHHHHCCCCCCHhHHHHHHHHHHhcCCHH-HHH
Q 010405 85 RFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALAL----FREMQSLDLEPNSAILVSLLSACAQLGALD-YGN 159 (511)
Q Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~-~a~ 159 (511)
+.+++++|.+++.. =...+.+.|+...|-++ .+-..+.+.++|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 35566666665433 12334445554444332 233334455556655555555554443211 122
Q ss_pred HHHHHHHH---cC--CCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhC
Q 010405 160 WVYSYIQK---KC--IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSK 234 (511)
Q Consensus 160 ~~~~~~~~---~~--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 234 (511)
.+.+.+++ .+ ...|+.....+...|.+.|++.+|+..|-.-.+++...+..++.-....|...
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~------------ 138 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPS------------ 138 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS-------------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCc------------
Confidence 22222222 21 23467888899999999999999988776443333222211221111112111
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchh
Q 010405 235 GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD 268 (511)
Q Consensus 235 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 268 (511)
.++...-.+++ -|...+++..|...+....+
T Consensus 139 --e~dlfi~RaVL-~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 139 --EADLFIARAVL-QYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp ---HHHHHHHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred --chhHHHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 11222223333 34556788888877776665
No 422
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=44.69 E-value=1e+02 Score=30.47 Aligned_cols=43 Identities=9% Similarity=0.165 Sum_probs=28.8
Q ss_pred HHhCCCCCCH--HHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC
Q 010405 299 IASMPMKPDN--VIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH 341 (511)
Q Consensus 299 ~~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 341 (511)
|....++|.. .+.++-+..+.+++++..|-.+.++++++.|..
T Consensus 289 FThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 289 FTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 3333555533 255666777889999999999999999998854
No 423
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=44.27 E-value=83 Score=20.08 Aligned_cols=31 Identities=16% Similarity=0.299 Sum_probs=15.0
Q ss_pred HCCChhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 010405 116 QNGRPKEALALFREMQSLDLEPNSAILVSLL 146 (511)
Q Consensus 116 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 146 (511)
+.|-..++..++++|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4444445555555555555544444444333
No 424
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.03 E-value=3.6e+02 Score=27.27 Aligned_cols=145 Identities=15% Similarity=0.146 Sum_probs=84.3
Q ss_pred HHHHHHHHhhCCCCCh--h--------HHHHHHHHHHHCCChhHHHHHHHHHHHCC-CCCCH-------hHHHHH-HHHH
Q 010405 89 VDDACRVFNQMPKRSL--V--------SWVVLISGFAQNGRPKEALALFREMQSLD-LEPNS-------AILVSL-LSAC 149 (511)
Q Consensus 89 ~~~A~~~~~~~~~~~~--~--------~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~-------~t~~~l-l~~~ 149 (511)
.|+|....++.++.|. . +...++-.-.-.|++.+|++-...|.+.- -.|.. .....+ .--|
T Consensus 298 tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys 377 (629)
T KOG2300|consen 298 TDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYS 377 (629)
T ss_pred HHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHh
Confidence 5566666666665541 1 12222333345799999999888887642 12331 111222 2334
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCccH--HHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHH--------HHHH--HH
Q 010405 150 AQLGALDYGNWVYSYIQKKCIKLDS--ILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSA--------IFGL--AM 217 (511)
Q Consensus 150 ~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l--------i~~~--~~ 217 (511)
...+.++.|+.-|....+.--..|. ..-..+.-.|.+.|+.++-.++++.+..++..++..- +.|+ ..
T Consensus 378 ~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~ 457 (629)
T KOG2300|consen 378 HSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFK 457 (629)
T ss_pred hhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 5677888888877776654323333 2334466678889999988888888887765554331 1111 23
Q ss_pred cCChHHHHHHHHHHHh
Q 010405 218 NGHSIEAFELFENMKS 233 (511)
Q Consensus 218 ~g~~~~A~~~~~~m~~ 233 (511)
.+++.||...+++-.+
T Consensus 458 qn~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 458 QNDLNEAKRFLRETLK 473 (629)
T ss_pred hccHHHHHHHHHHHHh
Confidence 5566666666665544
No 425
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=42.80 E-value=1.6e+02 Score=27.54 Aligned_cols=52 Identities=17% Similarity=0.149 Sum_probs=28.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHH
Q 010405 79 ILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQS 132 (511)
Q Consensus 79 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 132 (511)
++..+-+.+++......++.+. .+..-...+......|++..|+++..+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3344444444444444444432 233344556667778888888887776654
No 426
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=42.75 E-value=31 Score=27.79 Aligned_cols=34 Identities=29% Similarity=0.575 Sum_probs=25.6
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010405 215 LAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250 (511)
Q Consensus 215 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 250 (511)
.-..|.-.+|..+|++|++.|-+||. |+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 33456667899999999999998875 56666554
No 427
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=41.92 E-value=51 Score=30.76 Aligned_cols=78 Identities=10% Similarity=0.022 Sum_probs=53.3
Q ss_pred CCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHH-HHHHhcCchhHHHHHHHHHhhcCCCCchhHHHH
Q 010405 272 IKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLL-GACRVHRNAEMGQRIGNMLIESDQNHDGRYILL 348 (511)
Q Consensus 272 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 348 (511)
+..|+..|...+.-..+.|.+.+...++.+. ...| |+..|-.-. .-+..+++++.+..+|.+.++++|++|..|...
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 4455666666665555666677777777665 3445 555664322 226778999999999999999999998877654
Q ss_pred H
Q 010405 349 S 349 (511)
Q Consensus 349 ~ 349 (511)
.
T Consensus 183 f 183 (435)
T COG5191 183 F 183 (435)
T ss_pred H
Confidence 3
No 428
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=40.75 E-value=89 Score=29.16 Aligned_cols=47 Identities=9% Similarity=-0.032 Sum_probs=21.9
Q ss_pred HhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 010405 319 RVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVR 365 (511)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 365 (511)
.+.|+.++|..+|+.++.+.|+++.....++.......+.-+|..++
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y 173 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCY 173 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhh
Confidence 34455555555555555555555544444444333333333443333
No 429
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=40.69 E-value=57 Score=29.11 Aligned_cols=55 Identities=15% Similarity=0.114 Sum_probs=27.4
Q ss_pred HHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC
Q 010405 287 GRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH 341 (511)
Q Consensus 287 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 341 (511)
.+.|+.+.|.+++.+. ...| ....|-.+...--+.|+++.|.+.+++.++++|++
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3445555555555444 2222 33455555444555555555555555555555544
No 430
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=40.30 E-value=3.2e+02 Score=25.72 Aligned_cols=79 Identities=10% Similarity=-0.030 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHcCC----CccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC-CCeeehHHHHHHHHHcCChHHHHHHHH
Q 010405 155 LDYGNWVYSYIQKKCI----KLDSILCAALIDMYAKCGSIDLAMQVFHSYGD-KDVSAYTSAIFGLAMNGHSIEAFELFE 229 (511)
Q Consensus 155 ~~~a~~~~~~~~~~~~----~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~ 229 (511)
.+.+.+.+......+. ..++.....+.....+.|+.+.-..+++.... ++..-...++.+++...+.+...+++.
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 3455555655555311 23344444455555555554444444443332 233334445555555555554445555
Q ss_pred HHHh
Q 010405 230 NMKS 233 (511)
Q Consensus 230 ~m~~ 233 (511)
....
T Consensus 226 ~~l~ 229 (324)
T PF11838_consen 226 LLLS 229 (324)
T ss_dssp HHHC
T ss_pred HHcC
Confidence 4444
No 431
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=40.26 E-value=1.6e+02 Score=25.38 Aligned_cols=31 Identities=16% Similarity=0.225 Sum_probs=16.9
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCCHHHHHH
Q 010405 283 VDLLGRAGLLEEAENFIASMPMKPDNVIWGT 313 (511)
Q Consensus 283 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 313 (511)
+-.|.+.|.+++|.+++++.-..|+......
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~ 148 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFSDPESQKLRM 148 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhcCCCchhHHH
Confidence 3445666666666666666522444444333
No 432
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=40.05 E-value=74 Score=23.68 Aligned_cols=38 Identities=13% Similarity=0.267 Sum_probs=22.8
Q ss_pred HHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCC
Q 010405 82 GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGR 119 (511)
Q Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 119 (511)
..+..-+.+.+.++++.++.++..+|..+..++-..+.
T Consensus 43 I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 43 IMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred HHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 33344556666666666666666666666666655444
No 433
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.73 E-value=3.1e+02 Score=25.29 Aligned_cols=187 Identities=15% Similarity=0.158 Sum_probs=113.0
Q ss_pred HCCChhHHHHHHHHHHHCCCCCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CC--CccHHHHHHHHHHHHhc
Q 010405 116 QNGRPKEALALFREMQSLDLEPN---SAILVSLLSACAQLGALDYGNWVYSYIQKK---CI--KLDSILCAALIDMYAKC 187 (511)
Q Consensus 116 ~~g~~~~A~~~~~~m~~~~~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~li~~y~~~ 187 (511)
+..++++|+.-|.+.++..-... -.+...++....+.+++++....+.+++.. .+ ..+....|++++.-+..
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 44589999999998876532222 234556788889999999988888777542 11 22345667788777766
Q ss_pred CCHHHHHHHHHhcCC-----CCeee----hHHHHHHHHHcCChHHHHHHHHHHHhCCC----CCC-------HHHHHHHH
Q 010405 188 GSIDLAMQVFHSYGD-----KDVSA----YTSAIFGLAMNGHSIEAFELFENMKSKGI----SPD-------SISYIAVL 247 (511)
Q Consensus 188 g~~~~A~~~~~~~~~-----~~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~-------~~t~~~ll 247 (511)
.+.+--...++.-.+ ++... -+.+...|...|.+.+..++++++..+-- ..| ...|..=+
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 766666555553321 23332 34566777778888888888888765311 111 12455556
Q ss_pred HHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHH----HHHHHHcCCHHHHHH-HHHhC
Q 010405 248 SACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACM----VDLLGRAGLLEEAEN-FIASM 302 (511)
Q Consensus 248 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l----i~~~~~~g~~~~A~~-~~~~~ 302 (511)
..|....+-..-..+|++......-.|.+.....+ ..+..+.|++++|.. +|+..
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 66767777777777777666533444544333222 123445677777643 44433
No 434
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=39.65 E-value=1e+02 Score=19.70 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=19.4
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010405 216 AMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248 (511)
Q Consensus 216 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 248 (511)
.+.|-.+++..++++|.+.|+.-+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345555566666666666666666555555443
No 435
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=39.63 E-value=47 Score=22.62 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=13.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHH
Q 010405 210 SAIFGLAMNGHSIEAFELFENMK 232 (511)
Q Consensus 210 ~li~~~~~~g~~~~A~~~~~~m~ 232 (511)
.+|.+|.+.|++++|.++..++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 44566666666666666665554
No 436
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=39.10 E-value=1.8e+02 Score=30.51 Aligned_cols=47 Identities=13% Similarity=0.023 Sum_probs=21.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHhccCCH
Q 010405 210 SAIFGLAMNGHSIEAFELFENMKSK--GISPDSISYIAVLSACSHLGWV 256 (511)
Q Consensus 210 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~ 256 (511)
++..+|..+|++..+..+++..... |-+.-...++..++...+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 4555555555555555555554432 1111122344444444444443
No 437
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=39.00 E-value=58 Score=30.37 Aligned_cols=38 Identities=18% Similarity=0.344 Sum_probs=27.9
Q ss_pred hHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 010405 208 YTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIA 245 (511)
Q Consensus 208 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 245 (511)
|+..|..-.+.|+.++|+.++++..+.|+.--..||..
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 66777778888888888888888888877654555543
No 438
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=38.98 E-value=2.8e+02 Score=24.76 Aligned_cols=54 Identities=17% Similarity=0.156 Sum_probs=25.8
Q ss_pred HHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHH----HHHHHcCCHHHHHHHHHh
Q 010405 247 LSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMV----DLLGRAGLLEEAENFIAS 301 (511)
Q Consensus 247 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li----~~~~~~g~~~~A~~~~~~ 301 (511)
+......|+++.|++....+.. .-+..|...+-.|. --+.|.|..++|+++.+.
T Consensus 71 Ir~~I~~G~Ie~Aie~in~l~P-eiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQLNP-EILDTNRELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHhccHHHHHHHHHHhCh-HHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4444556666666666555543 12222321111111 113456667777776654
No 439
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=38.86 E-value=3.2e+02 Score=27.61 Aligned_cols=104 Identities=14% Similarity=0.042 Sum_probs=72.8
Q ss_pred HHHHhcCCHHHHHHHHHhcCC---C---------CeeehHHHHHHHHHcCChHHHHHHHHHHHh-------CCCCCC---
Q 010405 182 DMYAKCGSIDLAMQVFHSYGD---K---------DVSAYTSAIFGLAMNGHSIEAFELFENMKS-------KGISPD--- 239 (511)
Q Consensus 182 ~~y~~~g~~~~A~~~~~~~~~---~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~g~~p~--- 239 (511)
..+.-.|++.+|.+++....- + .-..||.|...+.+.|.+.-+..+|.+.++ .|++|.
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 345567999999999875432 1 234588888888888888777777776653 465553
Q ss_pred --------HHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHH
Q 010405 240 --------SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGR 288 (511)
Q Consensus 240 --------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 288 (511)
..+|+. .-.+.+.|++-.|.+.|....+. +..++..|..|...|..
T Consensus 328 tls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v--fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 328 TLSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV--FHRNPRLWLRLAECCIM 381 (696)
T ss_pred ehhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHH
Confidence 234543 33578899999999999998873 45666788888777653
No 440
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=38.20 E-value=3.5e+02 Score=25.52 Aligned_cols=73 Identities=14% Similarity=0.216 Sum_probs=49.1
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHH----------cCCHHH
Q 010405 225 FELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGR----------AGLLEE 294 (511)
Q Consensus 225 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----------~g~~~~ 294 (511)
.++++.|...++.|.-..|.-+.-.+++.=.+...+.+|+.+..+ |. -|..|+..|+. .|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD----~~--rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD----PQ--RFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC----hh--hhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 467777778888888888877777777777788888888888752 21 24444444332 467777
Q ss_pred HHHHHHhCC
Q 010405 295 AENFIASMP 303 (511)
Q Consensus 295 A~~~~~~~~ 303 (511)
-+++++.-+
T Consensus 337 nmkLLQ~yp 345 (370)
T KOG4567|consen 337 NMKLLQNYP 345 (370)
T ss_pred HHHHHhcCC
Confidence 777776654
No 441
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=37.95 E-value=1.9e+02 Score=30.36 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=12.5
Q ss_pred HHHHHHHHcCChHHHHHHHccCC
Q 010405 47 SMINGYVRNGEILEGLKLFDKMP 69 (511)
Q Consensus 47 ~li~~~~~~g~~~~A~~~~~~m~ 69 (511)
+|..+|..+|++..+.++++...
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~ 55 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFI 55 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh
Confidence 45555555555555555555443
No 442
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=37.60 E-value=3.7e+02 Score=25.59 Aligned_cols=17 Identities=6% Similarity=-0.103 Sum_probs=11.8
Q ss_pred HHHHHHHHHhhcCCCCc
Q 010405 326 MGQRIGNMLIESDQNHD 342 (511)
Q Consensus 326 ~a~~~~~~~~~~~p~~~ 342 (511)
.|.+...++.+.+|..|
T Consensus 380 ~AvEAihRAvEFNPHVP 396 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVP 396 (556)
T ss_pred HHHHHHHHHhhcCCCCc
Confidence 46667777777887654
No 443
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=37.56 E-value=55 Score=22.29 Aligned_cols=44 Identities=16% Similarity=0.366 Sum_probs=28.5
Q ss_pred HHHHHHHHhhCCC--CChhHHHHHHHHHHHCCChhHHHHHHHHHHH
Q 010405 89 VDDACRVFNQMPK--RSLVSWVVLISGFAQNGRPKEALALFREMQS 132 (511)
Q Consensus 89 ~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 132 (511)
++...++++.++. .|-.-.-.+|.+|.+.|++++|.+...++.+
T Consensus 6 ~~~~~~~~~~lR~~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444445544432 2444455678899999999999998887754
No 444
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=37.09 E-value=2.2e+02 Score=22.81 Aligned_cols=58 Identities=21% Similarity=0.174 Sum_probs=32.3
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCchhHHHHHHHH
Q 010405 276 LDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWG-TLLGACRVHRNAEMGQRIGNM 333 (511)
Q Consensus 276 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~ 333 (511)
..+-.++..++.=.|..++|.+++...+--++-...| .++..|....+.++..++-++
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~ 124 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNE 124 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4455566666666677777777766664333333332 355666666555555544433
No 445
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=36.58 E-value=1.7e+02 Score=24.09 Aligned_cols=22 Identities=5% Similarity=-0.120 Sum_probs=9.7
Q ss_pred HHHHhccCCHHHHHHHHHHchh
Q 010405 247 LSACSHLGWVEKGFYYFHSMFD 268 (511)
Q Consensus 247 l~~~~~~g~~~~a~~~~~~~~~ 268 (511)
+..+...++.-.|.++++.+.+
T Consensus 27 l~~L~~~~~~~sAeei~~~l~~ 48 (145)
T COG0735 27 LELLLEADGHLSAEELYEELRE 48 (145)
T ss_pred HHHHHhcCCCCCHHHHHHHHHH
Confidence 3333333333444455555444
No 446
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=36.38 E-value=2.1e+02 Score=23.47 Aligned_cols=62 Identities=6% Similarity=0.103 Sum_probs=31.7
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 010405 128 REMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSI 190 (511)
Q Consensus 128 ~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 190 (511)
..+.+.|++++.. -..++..+...+..-.|.++|+.+.+.+.+.+..|.-.-++.+...|-+
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 3444555555442 3344555555555566666666666665544433322234555555543
No 447
>PF15469 Sec5: Exocyst complex component Sec5
Probab=36.36 E-value=2.7e+02 Score=23.76 Aligned_cols=24 Identities=13% Similarity=0.210 Sum_probs=14.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHchh
Q 010405 245 AVLSACSHLGWVEKGFYYFHSMFD 268 (511)
Q Consensus 245 ~ll~~~~~~g~~~~a~~~~~~~~~ 268 (511)
.-|.-|...|+++.+...|..+..
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~ 114 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKS 114 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHH
Confidence 344455566666666666665554
No 448
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=36.33 E-value=42 Score=24.15 Aligned_cols=29 Identities=21% Similarity=0.338 Sum_probs=18.9
Q ss_pred ccHHHHHHHHHHHHHHHHHcCcccCCccc
Q 010405 399 EKTQEIYQFWEEIVKKIKNYGYNVETRSV 427 (511)
Q Consensus 399 ~~~~~~~~~~~~l~~~m~~~g~~p~~~~~ 427 (511)
+...++++.+++...+++..|+.||-..+
T Consensus 5 ~~li~il~~ie~~inELk~dG~ePDivL~ 33 (85)
T PF08967_consen 5 GDLIRILELIEEKINELKEDGFEPDIVLV 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT----EEEE
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 34556777888889999999999996653
No 449
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.33 E-value=4.3e+02 Score=26.02 Aligned_cols=91 Identities=14% Similarity=0.132 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCC------CCeeehHHHHHHHHHcCChHHHHHHHHHHHhC---------CCCCC
Q 010405 175 ILCAALIDMYAKCGSIDLAMQVFHSYGD------KDVSAYTSAIFGLAMNGHSIEAFELFENMKSK---------GISPD 239 (511)
Q Consensus 175 ~~~~~li~~y~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------g~~p~ 239 (511)
..+.-+.+-|..+|+++.|.+.|.+..+ .-+..|-.+|..-.-.|+|........+.... .+.+-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 3556678888899999999998888543 12234555566556667776666665555432 12223
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHch
Q 010405 240 SISYIAVLSACSHLGWVEKGFYYFHSMF 267 (511)
Q Consensus 240 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 267 (511)
...+..+...+. +++..|.+.|-...
T Consensus 231 l~C~agLa~L~l--kkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 231 LKCAAGLANLLL--KKYKSAAKYFLLAE 256 (466)
T ss_pred hHHHHHHHHHHH--HHHHHHHHHHHhCC
Confidence 333433333322 35566655554443
No 450
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=36.20 E-value=2.4e+02 Score=24.53 Aligned_cols=51 Identities=16% Similarity=0.282 Sum_probs=28.8
Q ss_pred HHhcCCHHHHHHHHHhcCC------CCeeehHHHHH-HHHHcCC--hHHHHHHHHHHHhC
Q 010405 184 YAKCGSIDLAMQVFHSYGD------KDVSAYTSAIF-GLAMNGH--SIEAFELFENMKSK 234 (511)
Q Consensus 184 y~~~g~~~~A~~~~~~~~~------~~~~~~~~li~-~~~~~g~--~~~A~~~~~~m~~~ 234 (511)
....|++++|.+-++++.+ +-...|..+.. +++.++. +-+|..++.-....
T Consensus 39 ~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 39 LLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 4456777777777766543 23344555554 5666654 44666666555443
No 451
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=36.19 E-value=3e+02 Score=27.59 Aligned_cols=94 Identities=12% Similarity=0.114 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCccHHHHHHHHH---HHHHHHHHcCcccCCcccc---ccCch
Q 010405 360 NAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWE---EIVKKIKNYGYNVETRSVM---FDIEE 433 (511)
Q Consensus 360 ~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~m~~~g~~p~~~~~~---~~~~~ 433 (511)
++..+++.+...|+....+-- . ++...|...--.++.+..|. +|.....+.|+..+..++- ..+..
T Consensus 152 DarlL~e~~~a~G~~a~EGG~------I--SYnlPYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpLtgtLvP 223 (480)
T TIGR01503 152 DARLLAEIILAGGFTSFEGGG------I--SYNIPYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPLTGTLVP 223 (480)
T ss_pred cHHHHHHHHHHcCCCccCCCc------c--eeccccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCCCCCccC
Confidence 456666777777765433311 0 11233443333455556554 7777777888887776643 22322
Q ss_pred hhhhhhhhhhhHHHHHHHHhccCCCCCc
Q 010405 434 EEKETVIGYHSEKLALAFGLICTKPGSV 461 (511)
Q Consensus 434 ~~~~~~~~~~~~~la~~~~~~~~~~~~~ 461 (511)
-.-...+...--.||...|+.+...++.
T Consensus 224 Psisiav~ilE~Lla~eqGVksisvgy~ 251 (480)
T TIGR01503 224 PSISNAIGIIEGLLAAEQGVKNITVGYG 251 (480)
T ss_pred hHHHHHHHHHHHHHHHHcCCeEEEeccc
Confidence 2222222222233577777766554443
No 452
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=36.14 E-value=2.3e+02 Score=22.71 Aligned_cols=41 Identities=12% Similarity=0.035 Sum_probs=32.1
Q ss_pred HHHHHHHHHhh--cCCCCchhHHHHHHHHHHcCCchHHHHHHH
Q 010405 326 MGQRIGNMLIE--SDQNHDGRYILLSNIYVETLKGENAEEVRK 366 (511)
Q Consensus 326 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 366 (511)
...++|..|.. +....+..|...+..+...|++.+|.++++
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35667777777 455566788888888999999999998885
No 453
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=36.05 E-value=15 Score=25.30 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=16.6
Q ss_pred ceEEEeCCCccccccCccccC
Q 010405 487 RKISIRDRKHYHHFEDGSCSC 507 (511)
Q Consensus 487 ~~i~~~d~~~~h~~~~g~~s~ 507 (511)
..|=+.|.+..|+|+|||-+-
T Consensus 8 ksi~LkDGstvyiFKDGKMam 28 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAM 28 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEE
T ss_pred eeEecCCCCEEEEEcCCceeh
Confidence 457788999999999998653
No 454
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=35.81 E-value=3.6e+02 Score=24.97 Aligned_cols=145 Identities=12% Similarity=0.009 Sum_probs=71.8
Q ss_pred HcCChHHHHHHHccCCC-CChhHHHHHHHHHHh----cCCHHHHHHHHhhCCCCC-hhHHHHHHHHHHH----CCChhHH
Q 010405 54 RNGEILEGLKLFDKMPQ-RNDVSWNSILGGLVR----FGSVDDACRVFNQMPKRS-LVSWVVLISGFAQ----NGRPKEA 123 (511)
Q Consensus 54 ~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~----~g~~~~A 123 (511)
..+++..+...+..... .+......+...|.. ..+...|...|....+.+ ......|...|.. ..+..+|
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A 132 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKA 132 (292)
T ss_pred ccccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHH
Confidence 34455566666655544 333344444444433 344666777777655443 3344445555544 2366777
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHhcC-------CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCCHHH
Q 010405 124 LALFREMQSLDLEPNSAILVSLLSACAQLG-------ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAK----CGSIDL 192 (511)
Q Consensus 124 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~ 192 (511)
...|++.-+.|..+...+...+...+..-. +...|...+.++...+ +......|..+|.. ..+.++
T Consensus 133 ~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~ 209 (292)
T COG0790 133 LKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKK 209 (292)
T ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHH
Confidence 777777777664432222333333333321 2225666666665554 33333444444433 224555
Q ss_pred HHHHHHhcC
Q 010405 193 AMQVFHSYG 201 (511)
Q Consensus 193 A~~~~~~~~ 201 (511)
|...|...-
T Consensus 210 A~~wy~~Aa 218 (292)
T COG0790 210 AFRWYKKAA 218 (292)
T ss_pred HHHHHHHHH
Confidence 555555443
No 455
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=35.81 E-value=2.2e+02 Score=22.58 Aligned_cols=19 Identities=11% Similarity=-0.109 Sum_probs=11.2
Q ss_pred HHHHHHcCCchHHHHHHHH
Q 010405 349 SNIYVETLKGENAEEVRKT 367 (511)
Q Consensus 349 ~~~~~~~g~~~~A~~~~~~ 367 (511)
+.++...|+.++|...|+.
T Consensus 107 a~Al~~~Gr~~eA~~~fr~ 125 (144)
T PF12968_consen 107 AVALEGLGRKEEALKEFRM 125 (144)
T ss_dssp HHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHhcCChHHHHHHHHH
Confidence 3455666777777776653
No 456
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=35.66 E-value=1.6e+02 Score=21.61 Aligned_cols=37 Identities=16% Similarity=0.171 Sum_probs=23.5
Q ss_pred hcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChH
Q 010405 186 KCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSI 222 (511)
Q Consensus 186 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 222 (511)
...+.++|.++++.++.++..+|.....++-..|+..
T Consensus 42 ~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 42 AGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTD 78 (84)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchH
Confidence 3445666777777776666666666666666655543
No 457
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=35.42 E-value=4.1e+02 Score=25.47 Aligned_cols=119 Identities=10% Similarity=-0.000 Sum_probs=78.6
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh------ccCCHHHHHHHHHHchhhcCCCCCHhH-HHHHHHHHHHcCC
Q 010405 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACS------HLGWVEKGFYYFHSMFDVHGIKPELDH-YACMVDLLGRAGL 291 (511)
Q Consensus 219 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~------~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~ 291 (511)
+..++++.++.+....+. |........|.++- ..-++.....+|+.+.. +.|++++ .|--+ +.++..-
T Consensus 270 ~lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apSPvV~LNRAV-Ala~~~G 344 (415)
T COG4941 270 ALIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPSPVVTLNRAV-ALAMREG 344 (415)
T ss_pred HHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCCCeEeehHHH-HHHHhhh
Confidence 335688899999888765 78888877776652 23467777778887765 4565433 33322 3444555
Q ss_pred HHHHHHHHHhCCCCCCH---HHH-HHHHHHHHhcCchhHHHHHHHHHhhcCCCCc
Q 010405 292 LEEAENFIASMPMKPDN---VIW-GTLLGACRVHRNAEMGQRIGNMLIESDQNHD 342 (511)
Q Consensus 292 ~~~A~~~~~~~~~~p~~---~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 342 (511)
++.++..++.+.-+|-. ..| ..=...+.+.|..++|...|+++..+.++..
T Consensus 345 p~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~a 399 (415)
T COG4941 345 PAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAA 399 (415)
T ss_pred HHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChH
Confidence 67777777777444322 222 3334458899999999999999999877543
No 458
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.35 E-value=6.5e+02 Score=27.83 Aligned_cols=41 Identities=7% Similarity=0.056 Sum_probs=27.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010405 212 IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSH 252 (511)
Q Consensus 212 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 252 (511)
+-.|......+-++.+++.+....-.++..-.+.++..|..
T Consensus 598 Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 598 VLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 34566667777778888887766555566666666666543
No 459
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=35.25 E-value=3.4e+02 Score=24.55 Aligned_cols=143 Identities=10% Similarity=0.047 Sum_probs=0.0
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 010405 80 LGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGN 159 (511)
Q Consensus 80 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 159 (511)
+..|++.-++.-|...++++.+| .--...+--|.+..+..---++.+-....+++-+......++ +...|+..+|.
T Consensus 137 MEiyS~ttRFalaCN~s~KIiEP--IQSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQal 212 (333)
T KOG0991|consen 137 MEIYSNTTRFALACNQSEKIIEP--IQSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQAL 212 (333)
T ss_pred HHHHcccchhhhhhcchhhhhhh--HHhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHH
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC
Q 010405 160 WVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD 239 (511)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 239 (511)
..++.-... --+-.+..+|+-..+|.+.....|+..+. .++.++|.+.+.++-+.|..|.
T Consensus 213 NnLQst~~g-------------------~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 213 NNLQSTVNG-------------------FGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred HHHHHHhcc-------------------ccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHH
Q ss_pred HHHHHHH
Q 010405 240 SISYIAV 246 (511)
Q Consensus 240 ~~t~~~l 246 (511)
...-+.+
T Consensus 273 Dii~~~F 279 (333)
T KOG0991|consen 273 DIITTLF 279 (333)
T ss_pred HHHHHHH
No 460
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.21 E-value=4.5e+02 Score=25.90 Aligned_cols=62 Identities=11% Similarity=0.050 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010405 106 SWVVLISGFAQNGRPKEALALFREMQSLD--LEPNSAILVSLLSACAQLGALDYGNWVYSYIQK 167 (511)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 167 (511)
.+.-+...|...|+++.|++.|.+.+.-- .+-....|..++..-.-.|+|.....+..++.+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 56677778888888888888887754321 111223455555555666777666665555554
No 461
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=35.11 E-value=4.7e+02 Score=26.04 Aligned_cols=19 Identities=11% Similarity=0.062 Sum_probs=10.4
Q ss_pred HcCcccCCccccc-cCchhh
Q 010405 417 NYGYNVETRSVMF-DIEEEE 435 (511)
Q Consensus 417 ~~g~~p~~~~~~~-~~~~~~ 435 (511)
..++.|++.++.. -++.+.
T Consensus 349 ~~~f~~~~Ry~~G~p~~~~~ 368 (410)
T TIGR02270 349 APRFKPGVRYLRGKPLGQES 368 (410)
T ss_pred cccCCCcccccCCCCCCHHH
Confidence 4457777776543 344433
No 462
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=35.08 E-value=5.5e+02 Score=26.84 Aligned_cols=63 Identities=11% Similarity=0.121 Sum_probs=33.8
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCC
Q 010405 71 RNDVSWNSILGGLVRFGSVDDACRVFNQMPKRS-LVSWVVLISGFAQNGRPKEALALFREMQSLDL 135 (511)
Q Consensus 71 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 135 (511)
+....+..|+.... .=+.+.-.++++++.. . ...|..++++....|-.....-+.+.+....+
T Consensus 308 ~~~~~f~~lv~~lR-~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~ 371 (574)
T smart00638 308 PAAAKFLRLVRLLR-TLSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKI 371 (574)
T ss_pred chHHHHHHHHHHHH-hCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 33444555555443 3334445555555443 2 46677777777777766555555555544433
No 463
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.43 E-value=3.7e+02 Score=29.35 Aligned_cols=157 Identities=14% Similarity=0.153 Sum_probs=95.5
Q ss_pred HHHHHHHcCChHHHHHHHccCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHH
Q 010405 48 MINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALF 127 (511)
Q Consensus 48 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 127 (511)
+|.-+.+.|.++-|+.+.+. ..+ -......+|+++.|++.-.++. +...|..|+..-..+|+.+-|...|
T Consensus 626 iIaYLqKkgypeiAL~FVkD-----~~t---RF~LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~y 695 (1202)
T KOG0292|consen 626 IIAYLQKKGYPEIALHFVKD-----ERT---RFELALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCY 695 (1202)
T ss_pred HHHHHHhcCCcceeeeeecC-----cch---heeeehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHH
Confidence 34444455555555544332 111 1234567899999988876654 4567999999999999999999998
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeee
Q 010405 128 REMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSA 207 (511)
Q Consensus 128 ~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~ 207 (511)
++.+.- .-|--.|.-.|+.++-.++-..+..++ |.... -....| .|+.++-.++++.....+..
T Consensus 696 Q~~knf---------ekLsfLYliTgn~eKL~Km~~iae~r~---D~~~~-~qnalY--l~dv~ervkIl~n~g~~~la- 759 (1202)
T KOG0292|consen 696 QRTKNF---------EKLSFLYLITGNLEKLSKMMKIAEIRN---DATGQ-FQNALY--LGDVKERVKILENGGQLPLA- 759 (1202)
T ss_pred HHhhhh---------hheeEEEEEeCCHHHHHHHHHHHHhhh---hhHHH-HHHHHH--hccHHHHHHHHHhcCcccHH-
Confidence 877642 233334556678887776665554432 22211 111122 47888888888766543321
Q ss_pred hHHHHHHHHHcCChHHHHHHHHHHHhC
Q 010405 208 YTSAIFGLAMNGHSIEAFELFENMKSK 234 (511)
Q Consensus 208 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 234 (511)
| ..-..+|.-++|.++.++....
T Consensus 760 y----lta~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 760 Y----LTAAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred H----HHHhhcCcHHHHHHHHHhhccc
Confidence 1 1123477788888888887653
No 464
>PHA02875 ankyrin repeat protein; Provisional
Probab=34.33 E-value=4.6e+02 Score=25.79 Aligned_cols=208 Identities=12% Similarity=0.000 Sum_probs=0.0
Q ss_pred HHHHHHHHcCChHHHHHHHccCCCCChhH--HHHHHHHHHhcCCHHHHHHHHhhCCCCChh--HHHHHHHHHHHCCChhH
Q 010405 47 SMINGYVRNGEILEGLKLFDKMPQRNDVS--WNSILGGLVRFGSVDDACRVFNQMPKRSLV--SWVVLISGFAQNGRPKE 122 (511)
Q Consensus 47 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~ 122 (511)
..+...++.|+.+-+..+++.-..++... ..+.+...+..|+.+-+.-+++.-..++.. ...+-+...+..|+.+.
T Consensus 4 ~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~ 83 (413)
T PHA02875 4 VALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKA 83 (413)
T ss_pred hHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHH
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHH--HHHHHHHhcCCHHHHHHHHHhc
Q 010405 123 ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCA--ALIDMYAKCGSIDLAMQVFHSY 200 (511)
Q Consensus 123 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~y~~~g~~~~A~~~~~~~ 200 (511)
+..+++.-....-..+..-.+.+..++.... .++.+.+.+.|..++..... +.+...+..|+.+-+..+++.-
T Consensus 84 v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~-----~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g 158 (413)
T PHA02875 84 VEELLDLGKFADDVFYKDGMTPLHLATILKK-----LDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHK 158 (413)
T ss_pred HHHHHHcCCcccccccCCCCCHHHHHHHhCC-----HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Q ss_pred CC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHH---HHHHHHhccCCHHHHHHHHH
Q 010405 201 GD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYI---AVLSACSHLGWVEKGFYYFH 264 (511)
Q Consensus 201 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~---~ll~~~~~~g~~~~a~~~~~ 264 (511)
.. +|..-++.+..+..... .++.+.+.+.|..|+...-. .++......|+.+-+.-+++
T Consensus 159 ~~~~~~d~~g~TpL~~A~~~g~-----~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~ 223 (413)
T PHA02875 159 ACLDIEDCCGCTPLIIAMAKGD-----IAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIK 223 (413)
T ss_pred CCCCCCCCCCCCHHHHHHHcCC-----HHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHH
No 465
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=33.27 E-value=78 Score=28.28 Aligned_cols=58 Identities=10% Similarity=0.139 Sum_probs=44.7
Q ss_pred HHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH
Q 010405 249 ACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKPDN 308 (511)
Q Consensus 249 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~ 308 (511)
...+.++.+.+.+++.+..+ -.+.+...|-.+...-.+.|+++.|.+-+++. .+.|+.
T Consensus 4 ~~~~~~D~~aaaely~qal~--lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALE--LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhh--cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34567888999999998876 22335778888888889999999999988876 556643
No 466
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=33.25 E-value=1.6e+02 Score=25.00 Aligned_cols=61 Identities=10% Similarity=0.059 Sum_probs=36.9
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHH
Q 010405 231 MKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLE 293 (511)
Q Consensus 231 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 293 (511)
+...|++++..-. .++..+...+..-.|.++++.+.+ .+...+..|--.-++.+.+.|-+.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~-~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLRE-AEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHh-hCCCCCcchHHHHHHHHHHCCCEE
Confidence 3455666655443 344444444556677788888876 455556555555666777777654
No 467
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=32.84 E-value=1.1e+02 Score=18.15 Aligned_cols=14 Identities=0% Similarity=-0.123 Sum_probs=6.2
Q ss_pred HHHhcCchhHHHHH
Q 010405 317 ACRVHRNAEMGQRI 330 (511)
Q Consensus 317 ~~~~~g~~~~a~~~ 330 (511)
.+-..|+.++|+.+
T Consensus 10 ~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 10 NFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHTT-HHHHHHH
T ss_pred HHHHHhhHHHHHHH
Confidence 34444555555555
No 468
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.72 E-value=5.5e+02 Score=26.14 Aligned_cols=25 Identities=8% Similarity=-0.023 Sum_probs=13.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCccHHH
Q 010405 152 LGALDYGNWVYSYIQKKCIKLDSIL 176 (511)
Q Consensus 152 ~~~~~~a~~~~~~~~~~~~~~~~~~ 176 (511)
.++.+.|..++..+...|..|....
T Consensus 256 ~~d~~~Al~~l~~ll~~Gedp~~i~ 280 (472)
T PRK14962 256 NGDVKRVFTVLDDVYYSGKDYEVLI 280 (472)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 3555556666665555555444333
No 469
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=32.71 E-value=4.2e+02 Score=24.75 Aligned_cols=135 Identities=11% Similarity=0.137 Sum_probs=72.6
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHCCCCCCHhH-------HHHHHHHHHhcCCHHHHHHHHHH----HHHcCCCccHHHHH
Q 010405 110 LISGFAQNGRPKEALALFREMQSLDLEPNSAI-------LVSLLSACAQLGALDYGNWVYSY----IQKKCIKLDSILCA 178 (511)
Q Consensus 110 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t-------~~~ll~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~ 178 (511)
+.+-..+.+++++|+..|.+....|+..|..+ ...+...|...|+...-.+.... |....-+..+.+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 44455677788888888888888777666543 44566666776665544333322 22222222344455
Q ss_pred HHHHHHHhc-CCHHHHHHHHHhcCC---CCe------eehHHHHHHHHHcCChHHHHHHHH----HHHhCCCCCCHHHHH
Q 010405 179 ALIDMYAKC-GSIDLAMQVFHSYGD---KDV------SAYTSAIFGLAMNGHSIEAFELFE----NMKSKGISPDSISYI 244 (511)
Q Consensus 179 ~li~~y~~~-g~~~~A~~~~~~~~~---~~~------~~~~~li~~~~~~g~~~~A~~~~~----~m~~~g~~p~~~t~~ 244 (511)
+|++.+-.. ..+++-+++.....+ +.- ..-.-++..+.+.|++.+|+.+.. ++++..-+|+..+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Confidence 555555432 334444444443322 100 112345677778888888877543 444445566655443
No 470
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=32.57 E-value=2.2e+02 Score=27.10 Aligned_cols=88 Identities=13% Similarity=0.005 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHH
Q 010405 278 HYACMVDLLGRAGLLEEAENFIASM-P---MKP--DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNI 351 (511)
Q Consensus 278 ~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 351 (511)
+|.-=..-|.+..++..|...|.+- . -.| +.+.|+.-..+-.-.|++..++.-..+++..+|.+...|..=+.+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 3444445567777888888887664 1 123 445666666666677888888888888888888888888777777
Q ss_pred HHHcCCchHHHHHH
Q 010405 352 YVETLKGENAEEVR 365 (511)
Q Consensus 352 ~~~~g~~~~A~~~~ 365 (511)
+....++++|....
T Consensus 163 ~~eLe~~~~a~nw~ 176 (390)
T KOG0551|consen 163 LLELERFAEAVNWC 176 (390)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777755555443
No 471
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=32.39 E-value=7.6e+02 Score=27.69 Aligned_cols=143 Identities=10% Similarity=0.029 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhc---CCCCCH--------hHHHHHHHHHHHcCC
Q 010405 223 EAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH---GIKPEL--------DHYACMVDLLGRAGL 291 (511)
Q Consensus 223 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~~--------~~~~~li~~~~~~g~ 291 (511)
--.++|++..+. +|-.+.....-..+..|.++-+.+....+.+.. ..+.+. ..|-.-+.++.....
T Consensus 674 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (932)
T PRK13184 674 FLPELFQRAWDL---RDYRALADIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKED 750 (932)
T ss_pred hhHHHHHHHhhc---ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHcccc
Confidence 334455544432 233444444555577888888777766665311 111111 112223455666667
Q ss_pred HHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC---chhHHHHHHHHHHcCCchHHHHHHH
Q 010405 292 LEEAENFIASMPMKPDNV--IWGTLLGACRVHRNAEMGQRIGNMLIESDQNH---DGRYILLSNIYVETLKGENAEEVRK 366 (511)
Q Consensus 292 ~~~A~~~~~~~~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~ 366 (511)
++++.+.+...+ |... .+..++.-+...++.+....+.+.+..-.+.. ......-+.+|.-..+|++|-+++.
T Consensus 751 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 828 (932)
T PRK13184 751 YEKAFKHLDNTD--PTLILYAFDLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLN 828 (932)
T ss_pred HHHHHhhhhhCC--HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHH
Confidence 777777666654 3322 33344444556667676666666666533221 1223355777888889999999986
Q ss_pred HHHh
Q 010405 367 TMRK 370 (511)
Q Consensus 367 ~m~~ 370 (511)
....
T Consensus 829 ~~~~ 832 (932)
T PRK13184 829 RYPL 832 (932)
T ss_pred hCCh
Confidence 5543
No 472
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=32.31 E-value=2.2e+02 Score=24.14 Aligned_cols=59 Identities=7% Similarity=-0.006 Sum_probs=27.3
Q ss_pred HHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 010405 131 QSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSI 190 (511)
Q Consensus 131 ~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 190 (511)
.+.|++++..-. .++..+......-.|.++++.+.+.+...+..|.---++.+...|-+
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 344555444322 33334333344445666666666655444433322234445555543
No 473
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=31.90 E-value=2.9e+02 Score=27.27 Aligned_cols=56 Identities=9% Similarity=-0.038 Sum_probs=28.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCCCCC----------CHHHHHHHHHHHHhcCchhHHHHHHHHHhh
Q 010405 281 CMVDLLGRAGLLEEAENFIASMPMKP----------DNVIWGTLLGACRVHRNAEMGQRIGNMLIE 336 (511)
Q Consensus 281 ~li~~~~~~g~~~~A~~~~~~~~~~p----------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (511)
.|++..+-.|++..|++.++.+.+.. .+.++..+.-+|...+++.+|.++|..++-
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666552211 122333344445555555555555555443
No 474
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=31.39 E-value=4.2e+02 Score=24.37 Aligned_cols=154 Identities=12% Similarity=0.007 Sum_probs=85.0
Q ss_pred hHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH-----HHHHHHHHHchhhcCCCCCHhHHHHH
Q 010405 208 YTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWV-----EKGFYYFHSMFDVHGIKPELDHYACM 282 (511)
Q Consensus 208 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~-----~~a~~~~~~~~~~~~~~p~~~~~~~l 282 (511)
.+.++..+.+.+...+|+.+.+.+... +-=..+.-.++......... ......+....+--.-.| .|..+
T Consensus 85 L~~iL~~lL~~~~~~~a~~i~~~y~~l--~~F~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~ll~~f~---~~l~I 159 (258)
T PF07064_consen 85 LHHILRHLLRRNLDEEALEIASKYRSL--PYFSHALELLLHTVLEEEADSSEDSPIPDALLPRVISLLQEFP---EYLEI 159 (258)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHhccC--CCcHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHcCc---chHHH
Confidence 455677777777777777777766542 11122233333322111100 111122222221000011 24444
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCc-------hhHHHHHHHHHHc
Q 010405 283 VDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD-------GRYILLSNIYVET 355 (511)
Q Consensus 283 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~ 355 (511)
+-.|.|.=....-..+|+..+ .| ..|+.-|.+.|+++.|-.++--+...++.+. ..-..|+.+....
T Consensus 160 vv~C~RKtE~~~W~~LF~~lg-~P-----~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~ 233 (258)
T PF07064_consen 160 VVNCARKTEVRYWPYLFDYLG-SP-----RDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALES 233 (258)
T ss_pred HHHHHHhhHHHHHHHHHHhcC-CH-----HHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhc
Confidence 444555555555556677665 33 3577888899999999888777766544332 2233667778889
Q ss_pred CCchHHHHHHHHHHhCC
Q 010405 356 LKGENAEEVRKTMRKRK 372 (511)
Q Consensus 356 g~~~~A~~~~~~m~~~g 372 (511)
++|+-+.++.+-+..-+
T Consensus 234 ~~w~Lc~eL~RFL~~ld 250 (258)
T PF07064_consen 234 GDWDLCFELVRFLKALD 250 (258)
T ss_pred ccHHHHHHHHHHHHHhC
Confidence 99999999988776543
No 475
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=30.96 E-value=32 Score=17.38 Aligned_cols=12 Identities=25% Similarity=0.545 Sum_probs=8.8
Q ss_pred cchhhHHHHhhh
Q 010405 472 SDCHSAMKLVSK 483 (511)
Q Consensus 472 ~~~~~~~~~~s~ 483 (511)
...|+++|+||.
T Consensus 10 qglhe~ikli~n 21 (23)
T PF08225_consen 10 QGLHEVIKLINN 21 (23)
T ss_pred HHHHHHHHHHhc
Confidence 346888888874
No 476
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=30.89 E-value=3.2e+02 Score=23.96 Aligned_cols=59 Identities=14% Similarity=0.132 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchh-HHHHHHHHHHcCCchHHHHHHHHH
Q 010405 310 IWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGR-YILLSNIYVETLKGENAEEVRKTM 368 (511)
Q Consensus 310 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-~~~l~~~~~~~g~~~~A~~~~~~m 368 (511)
..+.++..|...||++.|-++|.-++...+-|... |..=+..+.+.+.-....+.++.|
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l 102 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWL 102 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHH
Confidence 34455566666666666666666666644433322 222233344444444433555444
No 477
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=30.18 E-value=5.4e+02 Score=25.26 Aligned_cols=55 Identities=9% Similarity=-0.075 Sum_probs=36.2
Q ss_pred HHHHCCChhHHHHHHHHHHHCCCCCCHh--HHHHHHHHHH--hcCCHHHHHHHHHHHHHc
Q 010405 113 GFAQNGRPKEALALFREMQSLDLEPNSA--ILVSLLSACA--QLGALDYGNWVYSYIQKK 168 (511)
Q Consensus 113 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~--t~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 168 (511)
.+.+.+++..|.++|..+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445788999999999988876 555544 3444444443 345667777777776654
No 478
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=30.05 E-value=1.6e+02 Score=20.38 Aligned_cols=30 Identities=7% Similarity=-0.075 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCC
Q 010405 105 VSWVVLISGFAQNGRPKEALALFREMQSLD 134 (511)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 134 (511)
..++.++..+++..-.++++..+.+..+.|
T Consensus 9 ~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 9 PLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 334444444444444444444444444444
No 479
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=29.89 E-value=1.6e+02 Score=21.70 Aligned_cols=42 Identities=12% Similarity=0.136 Sum_probs=25.0
Q ss_pred HHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHH
Q 010405 82 GLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEA 123 (511)
Q Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 123 (511)
.-.+..+.+.|..+++.++.++..+|.+..+++...|..+-|
T Consensus 37 I~~~~t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~~~~La 78 (86)
T cd08323 37 VKSKATQKEKAVMLINMILTKDNHAYVSFYNALLHEGYKDLA 78 (86)
T ss_pred HHcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCChHHH
Confidence 334455566666666666666666666666666555544433
No 480
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=29.77 E-value=4.4e+02 Score=24.08 Aligned_cols=89 Identities=11% Similarity=-0.014 Sum_probs=63.1
Q ss_pred HHHHHHhcCCHHHHHHHHhhCC----------CCChh-----------HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCC
Q 010405 79 ILGGLVRFGSVDDACRVFNQMP----------KRSLV-----------SWVVLISGFAQNGRPKEALALFREMQSLDLEP 137 (511)
Q Consensus 79 li~~~~~~g~~~~A~~~~~~~~----------~~~~~-----------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 137 (511)
=.+-+.+.|++.+|..-|.+.. +|... .+-.+-.++...|++-++++.-.+.+... +-
T Consensus 184 ~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~-~~ 262 (329)
T KOG0545|consen 184 EGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH-PG 262 (329)
T ss_pred hhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC-Cc
Confidence 3455677888888887766542 23222 23334455566788889988888887763 55
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010405 138 NSAILVSLLSACAQLGALDYGNWVYSYIQKK 168 (511)
Q Consensus 138 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 168 (511)
|..+|..-..|.+..-+.++|..=|..+++.
T Consensus 263 nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 263 NVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 7788888888888888889998888888875
No 481
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.44 E-value=7.9e+02 Score=26.97 Aligned_cols=303 Identities=13% Similarity=0.068 Sum_probs=139.7
Q ss_pred HHHHHcCChHHHHHHHccCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHH
Q 010405 50 NGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE 129 (511)
Q Consensus 50 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 129 (511)
..|...|++++|+++-+.-+.-=..++..-.+.|.+.+++..|.+++-++ ..++-.+.--|....+.+ ++..|-.
T Consensus 366 k~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t----~~~FEEVaLKFl~~~~~~-~L~~~L~ 440 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAET----LSSFEEVALKFLEINQER-ALRTFLD 440 (911)
T ss_pred HHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh----hhhHHHHHHHHHhcCCHH-HHHHHHH
Confidence 45667888888888765541111123333345667778888888888777 334555555555555555 5554422
Q ss_pred HHHCCCCCCHhHHHHHHHHH------HhcCCHH----HHHHHHHH--------HHH-cCCCccHHHHHHHHHHHHhcCCH
Q 010405 130 MQSLDLEPNSAILVSLLSAC------AQLGALD----YGNWVYSY--------IQK-KCIKLDSILCAALIDMYAKCGSI 190 (511)
Q Consensus 130 m~~~~~~p~~~t~~~ll~~~------~~~~~~~----~a~~~~~~--------~~~-~~~~~~~~~~~~li~~y~~~g~~ 190 (511)
=+-..++|...+-..++..+ .+.++++ ++..-++. +.+ .....+.....+........|+.
T Consensus 441 KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~~~~~~~ 520 (911)
T KOG2034|consen 441 KKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLLASHGRQ 520 (911)
T ss_pred HHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHccCH
Confidence 22223445444333322221 2223222 12111111 100 00111222233334444555666
Q ss_pred HHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHchhh
Q 010405 191 DLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS-ISYIAVLSACSHLGWVEKGFYYFHSMFDV 269 (511)
Q Consensus 191 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 269 (511)
+.+..+-.-|. -|..++.-+.+.+.+++|++++..- ..|.. .-|... .....+.+....+.....
T Consensus 521 e~ll~fA~l~~-----d~~~vv~~~~q~e~yeeaLevL~~~----~~~el~yk~ap~----Li~~~p~~tV~~wm~~~d- 586 (911)
T KOG2034|consen 521 EELLQFANLIK-----DYEFVVSYWIQQENYEEALEVLLNQ----RNPELFYKYAPE----LITHSPKETVSAWMAQKD- 586 (911)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhc----cchhhHHHhhhH----HHhcCcHHHHHHHHHccc-
Confidence 66554433332 2455666777777777777776543 12211 111111 112334444444444432
Q ss_pred cCCCCCHhHHHHHHHHHHHcCC---HHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCch
Q 010405 270 HGIKPELDHYACMVDLLGRAGL---LEEAENFIASM---PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDG 343 (511)
Q Consensus 270 ~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 343 (511)
.........++..+.+.+. ...+...++-- .-.-++...+.++..|..+.+-+ ....++...........
T Consensus 587 ---~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~-ll~~le~~~~~~~~~~Y 662 (911)
T KOG2034|consen 587 ---LDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDD-LLLYLEIIKFMKSRVHY 662 (911)
T ss_pred ---cCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccc-hHHHHHHHhhcccccee
Confidence 1222334445555554432 22333332211 12247778888888877665433 33333333332221112
Q ss_pred hHHHHHHHHHHcCCch------HHHHHHHHHHhCCCcc
Q 010405 344 RYILLSNIYVETLKGE------NAEEVRKTMRKRKIKR 375 (511)
Q Consensus 344 ~~~~l~~~~~~~g~~~------~A~~~~~~m~~~g~~~ 375 (511)
-....++.|.+.+.-. -+.+++..+.+.-+..
T Consensus 663 Dl~~alRlc~~~~~~ra~V~l~~~l~l~~~aVdlAL~~ 700 (911)
T KOG2034|consen 663 DLDYALRLCLKFKKTRACVFLLCMLNLFEDAVDLALQF 700 (911)
T ss_pred cHHHHHHHHHHhCccceeeeHHHHHHHHHHHHHHHhhc
Confidence 2224456666665443 4455555555555543
No 482
>PF14044 NETI: NETI protein
Probab=28.60 E-value=52 Score=21.84 Aligned_cols=17 Identities=24% Similarity=0.446 Sum_probs=13.9
Q ss_pred HHHHHHHHHcCcccCCc
Q 010405 409 EEIVKKIKNYGYNVETR 425 (511)
Q Consensus 409 ~~l~~~m~~~g~~p~~~ 425 (511)
.+.+.+|++.||.|-..
T Consensus 11 ~~CL~RM~~eGY~PvrR 27 (57)
T PF14044_consen 11 SDCLARMKKEGYMPVRR 27 (57)
T ss_pred HHHHHHHHHcCCCceee
Confidence 36789999999999654
No 483
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=28.33 E-value=5.3e+02 Score=24.61 Aligned_cols=11 Identities=45% Similarity=0.673 Sum_probs=8.5
Q ss_pred hhHHHHHHHHh
Q 010405 443 HSEKLALAFGL 453 (511)
Q Consensus 443 ~~~~la~~~~~ 453 (511)
..+.||.+||+
T Consensus 319 ~l~~MA~aFgV 329 (393)
T KOG0687|consen 319 TLESMAKAFGV 329 (393)
T ss_pred HHHHHHHHhCc
Confidence 45778989987
No 484
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=28.27 E-value=4.1e+02 Score=23.29 Aligned_cols=28 Identities=14% Similarity=0.103 Sum_probs=21.5
Q ss_pred ehHHHHHHHHHcCChHHHHHHHHHHHhC
Q 010405 207 AYTSAIFGLAMNGHSIEAFELFENMKSK 234 (511)
Q Consensus 207 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 234 (511)
..+.++..+...|+++.|-+.|.-+.+.
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 4566777788888888888888877764
No 485
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=27.62 E-value=2.9e+02 Score=25.10 Aligned_cols=57 Identities=11% Similarity=0.084 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCC---------CeeehHHHHHHHHHcCChHHHHHHHHHHH
Q 010405 176 LCAALIDMYAKCGSIDLAMQVFHSYGDK---------DVSAYTSAIFGLAMNGHSIEAFELFENMK 232 (511)
Q Consensus 176 ~~~~li~~y~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 232 (511)
..--+...|.+.|++++|.++|+.+... .......+..++...|+.+..+.+--++.
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3345667788888888888888877421 11233445566667788877777655543
No 486
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=27.51 E-value=1.6e+02 Score=20.35 Aligned_cols=51 Identities=10% Similarity=0.042 Sum_probs=37.2
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 010405 135 LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAK 186 (511)
Q Consensus 135 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 186 (511)
+.|+...++.++..++.....+.+...+.++.+.|. .+..+|.--+..+++
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 346677788889999988889999999999998874 455666555555554
No 487
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=27.40 E-value=1.3e+02 Score=30.02 Aligned_cols=102 Identities=12% Similarity=0.061 Sum_probs=56.2
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC--CC-eeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCH
Q 010405 181 IDMYAKCGSIDLAMQVFHSYGD--KD-VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD-SISYIAVLSACSHLGWV 256 (511)
Q Consensus 181 i~~y~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~ 256 (511)
.+-+.+.+.++.|..++.+..+ || ++-|..-..++.+.+++..|+.=+....+.. |+ ...|..=..+|...+..
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHHH
Confidence 3445566777777777777665 32 2333333466677777777776666655532 33 22333333445555566
Q ss_pred HHHHHHHHHchhhcCCCCCHhHHHHHHHHHH
Q 010405 257 EKGFYYFHSMFDVHGIKPELDHYACMVDLLG 287 (511)
Q Consensus 257 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 287 (511)
.+|...|+.... +.|+..-...+++-+-
T Consensus 89 ~~A~~~l~~~~~---l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 89 KKALLDLEKVKK---LAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHhhh---cCcCcHHHHHHHHHHH
Confidence 666666665554 5566555555554443
No 488
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=26.80 E-value=1.3e+02 Score=21.26 Aligned_cols=39 Identities=26% Similarity=0.410 Sum_probs=27.5
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 010405 216 AMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254 (511)
Q Consensus 216 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 254 (511)
...|+.+.+.+++++....|..|.......+..+....|
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 457888888999998888888877776666665554433
No 489
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=26.76 E-value=2.2e+02 Score=25.93 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=14.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC
Q 010405 280 ACMVDLLGRAGLLEEAENFIASM 302 (511)
Q Consensus 280 ~~li~~~~~~g~~~~A~~~~~~~ 302 (511)
..|..-|.+.|++++|.++|+.+
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 34556666677777777776665
No 490
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=26.72 E-value=4.8e+02 Score=23.56 Aligned_cols=159 Identities=18% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc-
Q 010405 110 LISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC-AQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC- 187 (511)
Q Consensus 110 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~- 187 (511)
++...-+.|+++++...++++...+...+..--+.+..+| ...|....+.+++..+.+..-.-.......++.-|.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~ki 86 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYKKKI 86 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHHHHH
Q ss_pred -----CCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCCh-----------------HHHHHHHHHHHh---CCCCCCHHH
Q 010405 188 -----GSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHS-----------------IEAFELFENMKS---KGISPDSIS 242 (511)
Q Consensus 188 -----g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~-----------------~~A~~~~~~m~~---~g~~p~~~t 242 (511)
.--.+...+++...-|...+-.+.+-.+-..|++ +.|.+.|++... ..++|...+
T Consensus 87 e~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~ 166 (236)
T PF00244_consen 87 EDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPL 166 (236)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcH
Q ss_pred HHHHHHHHh-----ccCCHHHHHHHHHHchh
Q 010405 243 YIAVLSACS-----HLGWVEKGFYYFHSMFD 268 (511)
Q Consensus 243 ~~~ll~~~~-----~~g~~~~a~~~~~~~~~ 268 (511)
+..|+--++ ..|+.++|.++-+....
T Consensus 167 rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 167 RLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
No 491
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=26.07 E-value=2.8e+02 Score=20.58 Aligned_cols=62 Identities=19% Similarity=0.099 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCC--CchhHHHHHHHHHHcCCch-HHHHHHHHH
Q 010405 307 DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQN--HDGRYILLSNIYVETLKGE-NAEEVRKTM 368 (511)
Q Consensus 307 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~-~A~~~~~~m 368 (511)
|...-..+...+...|+++.|++.+-.+++.+|+ +...-..|+.++.-.|.-+ -+.+..++|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4455556666777777888877777777775543 3455566777766666643 344444333
No 492
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=25.88 E-value=1.1e+02 Score=28.53 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=8.6
Q ss_pred ccCCHHHHHHHHHHchh
Q 010405 252 HLGWVEKGFYYFHSMFD 268 (511)
Q Consensus 252 ~~g~~~~a~~~~~~~~~ 268 (511)
+.|+.++|..+|.....
T Consensus 128 ~~Gk~ekA~~lfeHAla 144 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALA 144 (472)
T ss_pred hccchHHHHHHHHHHHh
Confidence 34555555555555443
No 493
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=25.72 E-value=6.5e+02 Score=24.72 Aligned_cols=183 Identities=11% Similarity=0.139 Sum_probs=108.8
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHH--HHHHhCCCCCCHHHHHHHHHH
Q 010405 172 LDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELF--ENMKSKGISPDSISYIAVLSA 249 (511)
Q Consensus 172 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~--~~m~~~g~~p~~~t~~~ll~~ 249 (511)
.+..+...+++.|...++|+.--+... ...-++|+...|+... +-|.-..-.||..|-..++..
T Consensus 50 s~~kv~~~i~~lc~~~~~w~~Lne~i~--------------~Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~li~t 115 (439)
T KOG1498|consen 50 SNTKVLEEIMKLCFSAKDWDLLNEQIR--------------LLSKKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKLIET 115 (439)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHH--------------HHHHHhhHHHHHHHHHHHHHHHhccCCCCchhHHHHHHH
Confidence 344556666777777777765432211 1223567777666532 223333335666666556554
Q ss_pred HhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHH------------HHHH
Q 010405 250 CSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGT------------LLGA 317 (511)
Q Consensus 250 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~------------ll~~ 317 (511)
+... -++ ++|-+..+ +..-..|...+-.+|+.++|.+++.+.+++ ||.+ =+..
T Consensus 116 Lr~V---teg-kIyvEvER-------arlTk~L~~ike~~Gdi~~Aa~il~el~VE----Tygsm~~~ekV~fiLEQmrK 180 (439)
T KOG1498|consen 116 LRTV---TEG-KIYVEVER-------ARLTKMLAKIKEEQGDIAEAADILCELQVE----TYGSMEKSEKVAFILEQMRL 180 (439)
T ss_pred HHHh---hcC-ceEEeehH-------HHHHHHHHHHHHHcCCHHHHHHHHHhcchh----hhhhhHHHHHHHHHHHHHHH
Confidence 3211 000 11111111 223345677788899999999999887643 2222 1356
Q ss_pred HHhcCchhHHHHHHHHHhhc---CCCC----chhHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEE
Q 010405 318 CRVHRNAEMGQRIGNMLIES---DQNH----DGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIE 383 (511)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~---~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ 383 (511)
|...+|+-.|.-+-+++... .|+- ...|..++......+.+=++-+.++..-..|-.......|+.
T Consensus 181 OG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~ 253 (439)
T KOG1498|consen 181 CLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIE 253 (439)
T ss_pred HHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhh
Confidence 88889999999888888772 2221 236778888888889999999999988877665554444543
No 494
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=25.49 E-value=1.7e+02 Score=22.66 Aligned_cols=46 Identities=22% Similarity=0.226 Sum_probs=28.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 010405 211 AIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWV 256 (511)
Q Consensus 211 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 256 (511)
++..+...+..-.|.++++++.+.+..++..|....|..+...|.+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 3444455555556777777777766666666666666666665543
No 495
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=25.40 E-value=2.9e+02 Score=20.54 Aligned_cols=34 Identities=9% Similarity=0.085 Sum_probs=20.9
Q ss_pred cCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCC
Q 010405 187 CGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGH 220 (511)
Q Consensus 187 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 220 (511)
.-+.+++.++++.++.++..+|..+..++-..++
T Consensus 47 ~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 47 PTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred CCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 3455666666666666666666666666654443
No 496
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=25.27 E-value=2e+02 Score=26.42 Aligned_cols=55 Identities=15% Similarity=-0.020 Sum_probs=46.7
Q ss_pred HHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 316 GACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
.++...++++.|....++.+.++|.++.-..--+-+|.+.|...-|.+-++...+
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 5578889999999999999999999887777778889999999999988877554
No 497
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=25.27 E-value=1.5e+02 Score=22.88 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=10.4
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC
Q 010405 79 ILGGLVRFGSVDDACRVFNQMPK 101 (511)
Q Consensus 79 li~~~~~~g~~~~A~~~~~~~~~ 101 (511)
++.-|...|+.++|...+.++..
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el~~ 30 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKELKL 30 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHTT-
T ss_pred HHHHHhcCCCHHHHHHHHHHhCC
Confidence 34444444555555555555433
No 498
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=25.23 E-value=4.1e+02 Score=27.07 Aligned_cols=89 Identities=10% Similarity=0.111 Sum_probs=54.2
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC--------chhHH
Q 010405 275 ELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH--------DGRYI 346 (511)
Q Consensus 275 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--------~~~~~ 346 (511)
++..|-..+.-|...+++++|.++.+..+ +...|.++......+.+..-++..|..+.+.+.-. +.--.
T Consensus 572 sV~py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~ 648 (737)
T KOG1524|consen 572 SVNPYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEE 648 (737)
T ss_pred eccccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHH
Confidence 34456666777778888888888877654 56677777777777777777777666665532210 01112
Q ss_pred HHHHHHHHcCCchHHHHHHH
Q 010405 347 LLSNIYVETLKGENAEEVRK 366 (511)
Q Consensus 347 ~l~~~~~~~g~~~~A~~~~~ 366 (511)
.++.-..-.|+..+|.-++.
T Consensus 649 ~mA~~~l~~G~~~eAe~iLl 668 (737)
T KOG1524|consen 649 QMAENSLMLGRMLEAETILL 668 (737)
T ss_pred HHHHHHHHhccchhhhHHHH
Confidence 23333444566666666553
No 499
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=25.21 E-value=2.2e+02 Score=23.16 Aligned_cols=31 Identities=16% Similarity=0.128 Sum_probs=18.4
Q ss_pred HHHHHHhcCchhHHHHHHHHHhhcCCCCchh
Q 010405 314 LLGACRVHRNAEMGQRIGNMLIESDQNHDGR 344 (511)
Q Consensus 314 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 344 (511)
|.-++.+.++++.+.++.+.+++.+|++..+
T Consensus 77 LAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 77 LAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 3344556666666666666666666665443
No 500
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.12 E-value=7.4e+02 Score=25.19 Aligned_cols=348 Identities=11% Similarity=0.048 Sum_probs=187.3
Q ss_pred HHHHHHHHhc-----CChHHHHHHHhcCCCC-Ch--hHHHHHHHHHHHcC-ChHHHHHHHccCCC--CChhHH-----HH
Q 010405 15 NSLIQFYSVC-----GRVRDARWVFDESDDL-DV--VSWNSMINGYVRNG-EILEGLKLFDKMPQ--RNDVSW-----NS 78 (511)
Q Consensus 15 ~~li~~~~~~-----g~~~~A~~~f~~~~~~-~~--~~~~~li~~~~~~g-~~~~A~~~~~~m~~--~~~~~~-----~~ 78 (511)
.+++-.|.++ ..++.|..+.+.|+.- |+ .++..|...|.... .+..|..++++..+ .+...| .-
T Consensus 53 g~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQ 132 (629)
T KOG2300|consen 53 GALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQ 132 (629)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 3455556553 2234444444455532 22 35666667777665 67777777777654 222222 34
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC-CCh--hHHHHHHHH------HHHC---CChhHHHHHHHHHHHCCCCCCHhH-----
Q 010405 79 ILGGLVRFGSVDDACRVFNQMPK-RSL--VSWVVLISG------FAQN---GRPKEALALFREMQSLDLEPNSAI----- 141 (511)
Q Consensus 79 li~~~~~~g~~~~A~~~~~~~~~-~~~--~~~~~li~~------~~~~---g~~~~A~~~~~~m~~~~~~p~~~t----- 141 (511)
|+..+.-..++..|.+++.--.+ .|. ..|.-++.. ..-. .+..+++....+|.+. ..+|...
T Consensus 133 Laql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n-~~sdk~~~E~Lk 211 (629)
T KOG2300|consen 133 LAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQN-ISSDKTQKEMLK 211 (629)
T ss_pred HHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhc-cCCChHHHHHHH
Confidence 56667778899999988654332 222 223222211 1222 2344455555566554 4555432
Q ss_pred -HH--HHHHHHHhcCCHHHHHHHHHHHHHc---CC------------CccHHHHHH------------------HHHHHH
Q 010405 142 -LV--SLLSACAQLGALDYGNWVYSYIQKK---CI------------KLDSILCAA------------------LIDMYA 185 (511)
Q Consensus 142 -~~--~ll~~~~~~~~~~~a~~~~~~~~~~---~~------------~~~~~~~~~------------------li~~y~ 185 (511)
|. .-+.-|.-.|+...++..++++.+. +- .|.+..+.. +..+|.
T Consensus 212 vFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~ 291 (629)
T KOG2300|consen 212 VFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYF 291 (629)
T ss_pred HHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHH
Confidence 11 1133345667877777777766542 11 122222211 122232
Q ss_pred h--cCCHHHHHHHHHhcCCCCe--ee--------hHHHHHHHHHcCChHHHHHHHHHHHhCC-CCCC--H-----HHHHH
Q 010405 186 K--CGSIDLAMQVFHSYGDKDV--SA--------YTSAIFGLAMNGHSIEAFELFENMKSKG-ISPD--S-----ISYIA 245 (511)
Q Consensus 186 ~--~g~~~~A~~~~~~~~~~~~--~~--------~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~-----~t~~~ 245 (511)
+ .+-.|+|+...++.++.|. .. ...++.+-.-.|++.+|++-...|.+-- -.|. . .....
T Consensus 292 ~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~ 371 (629)
T KOG2300|consen 292 KKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHM 371 (629)
T ss_pred HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHH
Confidence 2 1123444444555555442 11 2222333345799999999999997631 2233 1 11222
Q ss_pred HHH-HHhccCCHHHHHHHHHHchhhcCCCCC--HhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHH--H------H
Q 010405 246 VLS-ACSHLGWVEKGFYYFHSMFDVHGIKPE--LDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWG--T------L 314 (511)
Q Consensus 246 ll~-~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~--~------l 314 (511)
++. -|...+.++.|..-|....+. --..| ...-..+.-.|.+.|+-+.-.++++.++- |+..++. . +
T Consensus 372 LlGlys~sv~~~enAe~hf~~a~k~-t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p-~nt~s~ssq~l~a~~~~ 449 (629)
T KOG2300|consen 372 LLGLYSHSVNCYENAEFHFIEATKL-TESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGP-LNTNSLSSQRLEASILY 449 (629)
T ss_pred HHhhHhhhcchHHHHHHHHHHHHHh-hhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCC-CCCCcchHHHHHHHHHH
Confidence 333 345568899999888877652 11222 23334566779999998888888888741 2221111 1 1
Q ss_pred HHH--HHhcCchhHHHHHHHHHhhcC-CCC-----chhHHHHHHHHHHcCCchHHHHHH
Q 010405 315 LGA--CRVHRNAEMGQRIGNMLIESD-QNH-----DGRYILLSNIYVETLKGENAEEVR 365 (511)
Q Consensus 315 l~~--~~~~g~~~~a~~~~~~~~~~~-p~~-----~~~~~~l~~~~~~~g~~~~A~~~~ 365 (511)
+.+ ....+++.+|..++.+.++.. ..+ .-....|...+...|+..++.+..
T Consensus 450 v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmv 508 (629)
T KOG2300|consen 450 VYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMV 508 (629)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhcc
Confidence 222 257789999999999988843 111 224456777778888888876654
Done!