Query 010405
Match_columns 511
No_of_seqs 692 out of 3755
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 06:06:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010405.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010405hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.8E-35 9.6E-40 306.4 34.8 360 7-371 146-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 9.4E-35 3.2E-39 302.4 28.9 357 9-371 82-504 (597)
3 4g26_A Pentatricopeptide repea 100.0 1E-29 3.6E-34 255.3 20.3 184 105-289 27-223 (501)
4 1w3b_A UDP-N-acetylglucosamine 100.0 4.4E-27 1.5E-31 231.1 35.3 349 17-371 5-368 (388)
5 1w3b_A UDP-N-acetylglucosamine 100.0 2.5E-26 8.5E-31 225.7 34.1 343 10-357 32-388 (388)
6 4g26_A Pentatricopeptide repea 100.0 2.3E-28 8E-33 245.5 19.6 200 121-321 7-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 6.9E-24 2.4E-28 215.9 29.4 356 11-371 6-478 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 2E-23 6.8E-28 209.0 30.3 320 40-367 24-405 (450)
9 2y4t_A DNAJ homolog subfamily 99.9 3E-23 1E-27 207.7 30.3 346 9-360 24-443 (450)
10 3fp2_A TPR repeat-containing p 99.9 2.3E-21 8E-26 198.5 28.7 355 11-372 25-492 (537)
11 2gw1_A Mitochondrial precursor 99.9 1.7E-21 5.7E-26 198.3 25.5 337 8-348 36-489 (514)
12 3ieg_A DNAJ homolog subfamily 99.9 1E-19 3.5E-24 175.7 29.9 308 44-354 5-352 (359)
13 3ieg_A DNAJ homolog subfamily 99.9 3.1E-19 1E-23 172.3 33.0 296 72-371 2-335 (359)
14 1fch_A Peroxisomal targeting s 99.8 6.2E-19 2.1E-23 171.2 25.2 277 86-366 38-354 (368)
15 3hym_B Cell division cycle pro 99.8 1.7E-18 5.7E-23 165.3 27.5 282 73-357 22-320 (330)
16 3fp2_A TPR repeat-containing p 99.8 9.1E-19 3.1E-23 179.2 26.5 334 9-346 57-500 (537)
17 3hym_B Cell division cycle pro 99.8 5.2E-18 1.8E-22 161.8 27.9 264 102-370 20-298 (330)
18 1b89_A Protein (clathrin heavy 99.8 1.6E-18 5.6E-23 166.5 22.3 302 23-353 15-339 (449)
19 2xm6_A Protein corresponding t 99.8 1.6E-16 5.5E-21 160.7 37.4 349 10-373 38-434 (490)
20 4eqf_A PEX5-related protein; a 99.8 1.6E-18 5.4E-23 168.4 21.2 261 103-367 64-352 (365)
21 1b89_A Protein (clathrin heavy 99.8 7.5E-20 2.6E-24 175.7 11.3 331 9-369 30-370 (449)
22 4g1t_A Interferon-induced prot 99.8 2.5E-17 8.4E-22 165.8 26.9 359 10-381 50-469 (472)
23 3mkr_A Coatomer subunit epsilo 99.8 7.9E-17 2.7E-21 150.9 28.1 271 81-365 7-288 (291)
24 1fch_A Peroxisomal targeting s 99.8 3.6E-18 1.2E-22 165.8 18.6 299 25-336 15-358 (368)
25 3cv0_A Peroxisome targeting si 99.8 3.6E-17 1.2E-21 155.7 22.7 258 105-367 22-311 (327)
26 4eqf_A PEX5-related protein; a 99.8 6E-18 2.1E-22 164.3 16.3 260 72-335 64-354 (365)
27 2xm6_A Protein corresponding t 99.8 8.3E-16 2.8E-20 155.5 32.5 332 10-354 74-452 (490)
28 2ooe_A Cleavage stimulation fa 99.8 1E-15 3.5E-20 156.5 32.6 359 9-372 11-455 (530)
29 3mkr_A Coatomer subunit epsilo 99.7 2.7E-16 9.1E-21 147.3 21.9 246 111-371 6-264 (291)
30 3cv0_A Peroxisome targeting si 99.7 2.6E-16 8.7E-21 149.8 20.3 223 43-268 22-268 (327)
31 3spa_A Mtrpol, DNA-directed RN 99.7 1.4E-17 4.9E-22 172.2 10.3 159 73-231 127-307 (1134)
32 1xi4_A Clathrin heavy chain; a 99.7 5.5E-14 1.9E-18 150.1 34.6 315 15-363 1053-1376(1630)
33 3spa_A Mtrpol, DNA-directed RN 99.7 2.4E-17 8.3E-22 170.5 8.0 132 170-302 123-262 (1134)
34 2ooe_A Cleavage stimulation fa 99.7 3.7E-14 1.3E-18 144.9 31.5 329 39-371 10-420 (530)
35 3uq3_A Heat shock protein STI1 99.7 4.8E-15 1.6E-19 135.8 20.1 224 105-338 6-237 (258)
36 1xi4_A Clathrin heavy chain; a 99.7 2.6E-13 8.8E-18 145.1 35.7 308 13-355 987-1327(1630)
37 3uq3_A Heat shock protein STI1 99.7 9.7E-15 3.3E-19 133.7 21.8 220 139-371 5-236 (258)
38 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.1E-14 3.8E-19 134.8 19.0 241 116-365 17-269 (275)
39 2pl2_A Hypothetical conserved 99.6 9.2E-15 3.1E-19 130.7 17.6 194 172-369 3-212 (217)
40 3u4t_A TPR repeat-containing p 99.6 4.1E-14 1.4E-18 130.9 20.8 242 78-354 8-267 (272)
41 1ouv_A Conserved hypothetical 99.6 5.6E-13 1.9E-17 123.5 26.3 225 103-340 5-254 (273)
42 3e4b_A ALGK; tetratricopeptide 99.6 3.9E-14 1.3E-18 141.3 19.5 344 16-374 8-390 (452)
43 2pl2_A Hypothetical conserved 99.6 6.3E-14 2.2E-18 125.2 18.6 194 103-302 4-211 (217)
44 2h6f_A Protein farnesyltransfe 99.6 7.1E-14 2.4E-18 135.4 20.4 246 104-355 97-366 (382)
45 4g1t_A Interferon-induced prot 99.6 2.8E-13 9.7E-18 136.0 24.1 324 11-348 94-470 (472)
46 1ouv_A Conserved hypothetical 99.6 1E-12 3.4E-17 121.8 25.8 224 138-373 5-253 (273)
47 2ho1_A Type 4 fimbrial biogene 99.6 3.8E-13 1.3E-17 122.8 22.5 206 104-344 37-245 (252)
48 3sf4_A G-protein-signaling mod 99.6 2.2E-13 7.7E-18 133.5 20.6 265 105-370 10-335 (406)
49 2vq2_A PILW, putative fimbrial 99.6 7.2E-13 2.5E-17 118.4 22.0 206 105-345 9-219 (225)
50 2q7f_A YRRB protein; TPR, prot 99.6 7.3E-14 2.5E-18 126.7 15.7 211 105-351 24-236 (243)
51 3e4b_A ALGK; tetratricopeptide 99.6 9.4E-14 3.2E-18 138.5 17.8 310 48-373 9-353 (452)
52 3u4t_A TPR repeat-containing p 99.6 7.4E-13 2.5E-17 122.3 22.6 224 42-268 3-249 (272)
53 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.4E-13 4.9E-18 127.3 17.6 237 86-331 18-269 (275)
54 4a1s_A PINS, partner of inscut 99.5 7.1E-14 2.4E-18 137.7 16.3 263 107-370 51-371 (411)
55 2ho1_A Type 4 fimbrial biogene 99.5 1.2E-12 4.1E-17 119.5 22.8 194 73-268 37-237 (252)
56 2vq2_A PILW, putative fimbrial 99.5 6.4E-13 2.2E-17 118.7 20.4 197 173-371 7-211 (225)
57 2h6f_A Protein farnesyltransfe 99.5 2.4E-13 8.2E-18 131.7 18.6 227 139-370 97-347 (382)
58 3ro2_A PINS homolog, G-protein 99.5 2.4E-13 8.1E-18 129.3 18.4 264 107-371 8-332 (338)
59 2q7f_A YRRB protein; TPR, prot 99.5 2.2E-13 7.7E-18 123.4 16.4 197 173-372 22-223 (243)
60 3sf4_A G-protein-signaling mod 99.5 1.2E-13 4E-18 135.6 14.4 153 207-359 189-364 (406)
61 3nf1_A KLC 1, kinesin light ch 99.5 2.6E-13 8.9E-18 127.8 13.2 243 104-370 27-306 (311)
62 4abn_A Tetratricopeptide repea 99.5 4.8E-13 1.7E-17 134.3 14.5 208 155-367 84-317 (474)
63 4a1s_A PINS, partner of inscut 99.5 5.4E-13 1.8E-17 131.3 14.3 234 106-339 88-374 (411)
64 2ond_A Cleavage stimulation fa 99.5 2.5E-11 8.6E-16 114.5 25.2 218 121-342 33-275 (308)
65 3vtx_A MAMA; tetratricopeptide 99.4 5.8E-12 2E-16 109.0 18.7 165 205-372 5-171 (184)
66 3ro2_A PINS homolog, G-protein 99.4 1.3E-12 4.3E-17 124.2 14.4 98 242-339 225-334 (338)
67 3ulq_A Response regulator aspa 99.4 3.6E-12 1.2E-16 124.3 17.6 163 207-370 186-367 (383)
68 3ulq_A Response regulator aspa 99.4 3.5E-12 1.2E-16 124.5 17.2 228 110-337 109-368 (383)
69 2ond_A Cleavage stimulation fa 99.4 5.8E-11 2E-15 112.0 22.5 210 90-302 33-267 (308)
70 1hz4_A MALT regulatory protein 99.4 3.4E-10 1.2E-14 109.7 28.1 263 108-370 18-321 (373)
71 3vtx_A MAMA; tetratricopeptide 99.3 7.8E-11 2.7E-15 101.8 19.1 161 105-268 6-169 (184)
72 4gyw_A UDP-N-acetylglucosamine 99.3 2E-11 6.8E-16 127.6 18.0 160 206-370 10-173 (723)
73 3nf1_A KLC 1, kinesin light ch 99.3 1.3E-11 4.4E-16 116.1 14.5 242 74-340 28-310 (311)
74 3q15_A PSP28, response regulat 99.3 3.8E-10 1.3E-14 109.7 25.1 226 110-336 107-364 (378)
75 4abn_A Tetratricopeptide repea 99.3 2E-11 6.7E-16 122.5 15.7 189 138-331 101-315 (474)
76 3q15_A PSP28, response regulat 99.3 6.6E-11 2.3E-15 115.1 18.7 299 71-370 8-364 (378)
77 3as5_A MAMA; tetratricopeptide 99.3 1E-10 3.5E-15 100.6 17.2 129 240-370 42-172 (186)
78 4e6h_A MRNA 3'-END-processing 99.3 2.7E-09 9.3E-14 110.3 28.9 362 8-371 63-570 (679)
79 3as5_A MAMA; tetratricopeptide 99.3 2.9E-10 9.8E-15 97.7 18.0 168 174-344 8-180 (186)
80 3edt_B KLC 2, kinesin light ch 99.3 9E-11 3.1E-15 108.5 15.7 231 116-370 13-280 (283)
81 4i17_A Hypothetical protein; T 99.3 2.2E-10 7.4E-15 102.8 17.4 203 137-351 5-223 (228)
82 1hz4_A MALT regulatory protein 99.2 2.2E-09 7.4E-14 104.0 24.2 231 107-338 56-323 (373)
83 4i17_A Hypothetical protein; T 99.2 3E-10 1E-14 101.9 15.3 189 172-371 5-209 (228)
84 4gyw_A UDP-N-acetylglucosamine 99.2 6E-10 2E-14 116.5 17.3 159 105-267 10-172 (723)
85 1qqe_A Vesicular transport pro 99.2 6.3E-10 2.2E-14 104.0 15.8 205 111-341 44-273 (292)
86 3edt_B KLC 2, kinesin light ch 99.1 3.7E-09 1.3E-13 97.5 19.3 210 104-337 43-281 (283)
87 1qqe_A Vesicular transport pro 99.1 5.4E-09 1.9E-13 97.6 18.3 200 74-302 38-266 (292)
88 3mv2_B Coatomer subunit epsilo 99.1 1.2E-08 4E-13 94.1 19.9 75 158-233 85-164 (310)
89 4e6h_A MRNA 3'-END-processing 99.1 1E-07 3.5E-12 98.6 29.1 216 123-342 328-575 (679)
90 3qky_A Outer membrane assembly 99.1 1.4E-08 4.8E-13 93.0 19.8 205 172-417 13-247 (261)
91 3mv2_B Coatomer subunit epsilo 99.0 2E-08 6.9E-13 92.5 19.6 204 51-267 22-238 (310)
92 3qky_A Outer membrane assembly 99.0 6.8E-09 2.3E-13 95.1 15.4 202 136-359 12-249 (261)
93 2fo7_A Synthetic consensus TPR 99.0 8.8E-09 3E-13 83.0 14.4 124 245-370 6-131 (136)
94 4ga2_A E3 SUMO-protein ligase 99.0 5.5E-10 1.9E-14 93.0 6.7 138 215-357 7-149 (150)
95 2yhc_A BAMD, UPF0169 lipoprote 99.0 2.4E-08 8.1E-13 89.2 17.7 183 174-374 4-216 (225)
96 2fo7_A Synthetic consensus TPR 99.0 2E-08 6.7E-13 80.9 14.8 131 207-340 3-135 (136)
97 2pzi_A Probable serine/threoni 98.9 1.9E-09 6.6E-14 113.0 10.0 168 185-357 402-583 (681)
98 3qou_A Protein YBBN; thioredox 98.9 2.3E-08 7.9E-13 93.0 15.8 174 192-369 104-282 (287)
99 3urz_A Uncharacterized protein 98.9 2.8E-08 9.7E-13 87.5 15.1 23 110-132 10-32 (208)
100 2pzi_A Probable serine/threoni 98.9 4.6E-08 1.6E-12 102.5 18.6 190 150-344 402-609 (681)
101 3rjv_A Putative SEL1 repeat pr 98.9 9.9E-08 3.4E-12 84.3 17.2 159 206-373 19-199 (212)
102 2r5s_A Uncharacterized protein 98.9 1.9E-08 6.5E-13 86.0 12.0 154 212-369 13-171 (176)
103 2r5s_A Uncharacterized protein 98.9 1.3E-07 4.5E-12 80.7 17.1 50 50-99 14-66 (176)
104 4ga2_A E3 SUMO-protein ligase 98.9 5E-09 1.7E-13 87.1 7.7 122 246-370 3-128 (150)
105 2ifu_A Gamma-SNAP; membrane fu 98.8 8.1E-08 2.8E-12 90.3 16.5 220 117-364 4-254 (307)
106 3urz_A Uncharacterized protein 98.8 1E-07 3.4E-12 84.0 15.9 188 141-350 6-198 (208)
107 3rjv_A Putative SEL1 repeat pr 98.8 1.4E-07 4.7E-12 83.4 16.8 168 92-268 5-196 (212)
108 2vsy_A XCC0866; transferase, g 98.8 5.2E-08 1.8E-12 100.1 16.1 160 187-349 2-169 (568)
109 3gyz_A Chaperone protein IPGC; 98.8 3.3E-08 1.1E-12 82.0 11.8 101 272-372 31-134 (151)
110 3qou_A Protein YBBN; thioredox 98.8 1.4E-07 4.8E-12 87.7 17.0 164 136-301 114-280 (287)
111 3dra_A Protein farnesyltransfe 98.8 6E-07 2E-11 83.4 21.0 219 119-370 48-286 (306)
112 3dra_A Protein farnesyltransfe 98.8 2.1E-06 7.3E-11 79.7 24.0 226 82-346 42-297 (306)
113 2vsy_A XCC0866; transferase, g 98.8 8.1E-08 2.8E-12 98.6 15.8 147 152-302 2-154 (568)
114 1hh8_A P67PHOX, NCF-2, neutrop 98.7 4.4E-07 1.5E-11 79.8 17.0 125 76-201 9-148 (213)
115 2yhc_A BAMD, UPF0169 lipoprote 98.7 8.2E-07 2.8E-11 79.1 18.4 57 246-302 153-210 (225)
116 4gco_A Protein STI-1; structur 98.7 7.8E-08 2.7E-12 77.1 10.4 94 277-370 14-109 (126)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.7 4.1E-07 1.4E-11 80.1 15.8 121 246-371 12-150 (213)
118 2vgx_A Chaperone SYCD; alterna 98.7 8.2E-08 2.8E-12 79.4 10.1 100 272-371 16-118 (148)
119 3u3w_A Transcriptional activat 98.7 2.7E-06 9.4E-11 79.1 21.3 160 211-370 81-265 (293)
120 2qfc_A PLCR protein; TPR, HTH, 98.7 5.5E-07 1.9E-11 83.9 16.3 162 208-369 78-264 (293)
121 4gco_A Protein STI-1; structur 98.7 2.1E-07 7E-12 74.6 11.6 114 236-351 8-124 (126)
122 2c2l_A CHIP, carboxy terminus 98.6 4.5E-08 1.5E-12 90.7 7.9 193 139-370 4-198 (281)
123 1a17_A Serine/threonine protei 98.6 5.9E-07 2E-11 75.3 13.7 128 241-370 14-145 (166)
124 4f3v_A ESX-1 secretion system 98.6 4.7E-07 1.6E-11 82.3 13.7 192 151-348 18-247 (282)
125 1na0_A Designed protein CTPR3; 98.6 7.5E-07 2.6E-11 70.3 13.3 115 240-356 9-125 (125)
126 2uy1_A Cleavage stimulation fa 98.6 2.4E-05 8.3E-10 78.2 27.2 347 10-370 14-412 (493)
127 2uy1_A Cleavage stimulation fa 98.6 1.9E-06 6.6E-11 86.3 19.0 321 23-368 6-380 (493)
128 2ifu_A Gamma-SNAP; membrane fu 98.6 2.6E-07 9E-12 86.7 11.5 195 152-369 4-222 (307)
129 2xcb_A PCRH, regulatory protei 98.6 5.7E-07 1.9E-11 73.6 12.1 95 276-370 18-114 (142)
130 2vyi_A SGTA protein; chaperone 98.6 7.9E-07 2.7E-11 70.9 12.8 118 240-359 12-131 (131)
131 3gw4_A Uncharacterized protein 98.6 4.3E-07 1.5E-11 79.1 11.6 115 85-199 4-132 (203)
132 2lni_A Stress-induced-phosphop 98.6 7.6E-07 2.6E-11 71.4 12.0 116 240-357 16-133 (133)
133 1p5q_A FKBP52, FK506-binding p 98.6 3.8E-07 1.3E-11 86.8 11.7 126 241-369 148-292 (336)
134 3u3w_A Transcriptional activat 98.5 1.3E-06 4.4E-11 81.3 14.6 122 79-200 81-222 (293)
135 3q7a_A Farnesyltransferase alp 98.5 4.8E-05 1.7E-09 71.4 24.7 180 107-291 57-257 (349)
136 2e2e_A Formate-dependent nitri 98.5 4.2E-07 1.4E-11 77.5 9.7 120 251-372 21-145 (177)
137 2c2l_A CHIP, carboxy terminus 98.5 1.4E-06 4.7E-11 80.6 13.6 97 103-201 3-99 (281)
138 4f3v_A ESX-1 secretion system 98.5 9.7E-07 3.3E-11 80.2 11.7 178 23-201 18-235 (282)
139 3upv_A Heat shock protein STI1 98.5 1.2E-06 4E-11 70.0 11.0 96 276-371 4-101 (126)
140 1a17_A Serine/threonine protei 98.5 3E-06 1E-10 70.9 13.7 94 105-200 14-107 (166)
141 3gw4_A Uncharacterized protein 98.5 8.8E-07 3E-11 77.1 10.8 127 73-199 26-172 (203)
142 2kck_A TPR repeat; tetratricop 98.5 1E-06 3.5E-11 68.1 10.1 98 276-373 6-108 (112)
143 2qfc_A PLCR protein; TPR, HTH, 98.5 5.3E-06 1.8E-10 77.1 16.5 93 106-199 77-180 (293)
144 3q7a_A Farnesyltransferase alp 98.4 1.2E-05 4.2E-10 75.4 18.2 214 153-370 68-330 (349)
145 1hxi_A PEX5, peroxisome target 98.4 8.3E-07 2.8E-11 70.4 8.7 95 278-372 19-115 (121)
146 3q49_B STIP1 homology and U bo 98.4 3.1E-06 1.1E-10 68.4 12.0 98 274-371 7-106 (137)
147 3dss_A Geranylgeranyl transfer 98.4 3.7E-05 1.3E-09 71.8 20.6 229 115-349 40-316 (331)
148 2vgx_A Chaperone SYCD; alterna 98.4 5.8E-07 2E-11 74.2 7.4 103 240-344 21-125 (148)
149 1na0_A Designed protein CTPR3; 98.4 5.9E-06 2E-10 65.0 13.2 92 76-168 12-106 (125)
150 2lni_A Stress-induced-phosphop 98.4 2.9E-06 9.8E-11 67.9 11.4 98 274-371 14-113 (133)
151 3gyz_A Chaperone protein IPGC; 98.4 4.2E-06 1.4E-10 69.1 12.2 91 106-198 38-128 (151)
152 3sz7_A HSC70 cochaperone (SGT) 98.4 2.6E-06 8.8E-11 71.5 10.9 95 276-370 11-107 (164)
153 1elw_A TPR1-domain of HOP; HOP 98.4 6.4E-06 2.2E-10 64.1 12.4 107 242-350 6-114 (118)
154 2fbn_A 70 kDa peptidylprolyl i 98.4 3.5E-06 1.2E-10 73.2 11.8 168 183-371 13-186 (198)
155 1elw_A TPR1-domain of HOP; HOP 98.3 4.7E-06 1.6E-10 64.9 11.4 98 275-372 3-102 (118)
156 4gcn_A Protein STI-1; structur 98.3 1.7E-06 5.8E-11 69.3 8.9 94 277-370 9-111 (127)
157 2dba_A Smooth muscle cell asso 98.3 5.6E-06 1.9E-10 67.6 12.3 95 276-370 28-127 (148)
158 2vyi_A SGTA protein; chaperone 98.3 6.5E-06 2.2E-10 65.4 12.4 93 105-199 13-105 (131)
159 3upv_A Heat shock protein STI1 98.3 4.6E-06 1.6E-10 66.4 10.9 110 241-352 5-122 (126)
160 2e2e_A Formate-dependent nitri 98.3 3.9E-06 1.3E-10 71.4 11.1 127 216-345 21-152 (177)
161 2xcb_A PCRH, regulatory protei 98.3 3E-06 1E-10 69.2 9.6 105 241-347 19-125 (142)
162 3sz7_A HSC70 cochaperone (SGT) 98.3 6.3E-06 2.1E-10 69.1 11.7 109 239-349 10-120 (164)
163 3dss_A Geranylgeranyl transfer 98.3 7.8E-05 2.7E-09 69.6 20.0 217 150-370 40-303 (331)
164 2dba_A Smooth muscle cell asso 98.3 1.2E-05 4.1E-10 65.6 13.0 111 239-352 27-143 (148)
165 1p5q_A FKBP52, FK506-binding p 98.3 7.3E-06 2.5E-10 77.8 13.0 95 104-199 147-255 (336)
166 2fbn_A 70 kDa peptidylprolyl i 98.2 1.8E-06 6.2E-11 75.1 7.3 120 80-200 11-148 (198)
167 4b4t_Q 26S proteasome regulato 98.2 2.3E-05 7.8E-10 77.1 15.4 55 146-200 11-81 (434)
168 1wao_1 Serine/threonine protei 98.2 6.5E-06 2.2E-10 82.2 11.4 85 183-268 15-102 (477)
169 2kck_A TPR repeat; tetratricop 98.2 1.2E-05 4.2E-10 61.8 10.7 101 240-342 6-111 (112)
170 2hr2_A Hypothetical protein; a 98.2 6.9E-06 2.4E-10 67.4 9.2 62 309-370 58-130 (159)
171 2xev_A YBGF; tetratricopeptide 98.2 6.4E-06 2.2E-10 65.7 9.0 90 281-370 7-104 (129)
172 1wao_1 Serine/threonine protei 98.2 4.2E-06 1.4E-10 83.6 9.2 116 249-366 15-134 (477)
173 3q49_B STIP1 homology and U bo 98.2 1.5E-05 5.1E-10 64.2 11.0 100 239-340 8-109 (137)
174 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1.5E-05 5E-10 79.2 13.0 129 242-370 270-414 (457)
175 4gcn_A Protein STI-1; structur 98.2 1.9E-05 6.5E-10 63.0 11.3 61 106-167 10-70 (127)
176 4b4t_Q 26S proteasome regulato 98.1 2.9E-05 9.8E-10 76.3 14.3 161 142-302 58-242 (434)
177 1elr_A TPR2A-domain of HOP; HO 98.1 9.3E-06 3.2E-10 64.5 8.9 108 242-352 6-122 (131)
178 1elr_A TPR2A-domain of HOP; HO 98.1 1.2E-05 4.2E-10 63.8 9.4 95 276-370 4-107 (131)
179 3ro3_A PINS homolog, G-protein 98.1 2.6E-05 8.8E-10 64.4 11.2 128 243-370 12-157 (164)
180 1hxi_A PEX5, peroxisome target 98.1 3.1E-05 1E-09 61.2 10.6 94 106-201 19-112 (121)
181 2xev_A YBGF; tetratricopeptide 98.1 5.1E-05 1.7E-09 60.2 12.1 100 246-347 8-115 (129)
182 3rkv_A Putative peptidylprolyl 98.1 1.5E-05 5.2E-10 66.5 9.2 63 308-370 63-125 (162)
183 3k9i_A BH0479 protein; putativ 98.1 3.8E-06 1.3E-10 66.0 5.0 82 289-370 3-89 (117)
184 3n71_A Histone lysine methyltr 98.0 5.4E-05 1.9E-09 75.2 14.1 125 249-373 318-466 (490)
185 1ihg_A Cyclophilin 40; ppiase 98.0 2.5E-05 8.7E-10 75.1 11.3 90 275-364 272-363 (370)
186 3ro3_A PINS homolog, G-protein 98.0 2E-05 7E-10 65.1 8.7 93 106-198 11-113 (164)
187 2if4_A ATFKBP42; FKBP-like, al 98.0 1.3E-05 4.3E-10 76.3 8.3 94 278-371 232-328 (338)
188 3k9i_A BH0479 protein; putativ 98.0 6.2E-06 2.1E-10 64.7 5.1 91 253-344 3-97 (117)
189 2hr2_A Hypothetical protein; a 98.0 2.1E-05 7.3E-10 64.5 7.7 102 246-347 17-141 (159)
190 3rkv_A Putative peptidylprolyl 97.9 2.3E-05 7.8E-10 65.5 8.0 74 276-349 63-139 (162)
191 1dce_A Protein (RAB geranylger 97.9 0.00028 9.6E-09 71.7 17.0 167 191-360 46-244 (567)
192 2if4_A ATFKBP42; FKBP-like, al 97.9 3.1E-05 1E-09 73.6 8.7 99 242-342 232-333 (338)
193 2l6j_A TPR repeat-containing p 97.9 4.1E-05 1.4E-09 58.9 7.6 92 275-366 3-102 (111)
194 3n71_A Histone lysine methyltr 97.8 0.00011 3.8E-09 73.0 12.0 130 114-268 319-463 (490)
195 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 0.0002 6.9E-09 71.0 13.6 119 105-224 269-404 (457)
196 1na3_A Designed protein CTPR2; 97.8 0.00011 3.8E-09 54.0 8.9 81 276-356 9-91 (91)
197 1ihg_A Cyclophilin 40; ppiase 97.8 0.00018 6.2E-09 69.0 12.6 118 76-195 226-362 (370)
198 3ma5_A Tetratricopeptide repea 97.8 0.00011 3.9E-09 55.5 8.7 64 307-370 6-69 (100)
199 2kat_A Uncharacterized protein 97.7 0.00019 6.5E-09 55.7 9.2 77 294-370 3-81 (115)
200 1zu2_A Mitochondrial import re 97.6 4.1E-05 1.4E-09 62.7 4.3 85 288-372 14-121 (158)
201 2l6j_A TPR repeat-containing p 97.6 8.2E-05 2.8E-09 57.1 5.7 95 104-200 4-104 (111)
202 3mkq_A Coatomer beta'-subunit; 97.6 0.0034 1.2E-07 66.9 20.2 167 19-230 607-774 (814)
203 3qwp_A SET and MYND domain-con 97.5 0.00039 1.3E-08 67.9 10.5 116 283-416 294-427 (429)
204 3bee_A Putative YFRE protein; 97.5 0.00075 2.6E-08 50.1 9.3 68 306-373 4-74 (93)
205 1klx_A Cysteine rich protein B 97.5 0.0014 4.8E-08 52.8 11.4 109 119-235 10-127 (138)
206 1klx_A Cysteine rich protein B 97.4 0.0014 4.7E-08 52.8 11.0 109 219-336 9-125 (138)
207 1na3_A Designed protein CTPR2; 97.4 0.0021 7.2E-08 46.8 10.9 82 104-187 9-90 (91)
208 1dce_A Protein (RAB geranylger 97.3 0.0066 2.3E-07 61.6 16.8 113 120-234 45-173 (567)
209 1zu2_A Mitochondrial import re 97.2 0.00032 1.1E-08 57.4 4.5 21 322-342 105-125 (158)
210 2kat_A Uncharacterized protein 97.2 0.0024 8.2E-08 49.3 9.5 75 123-199 4-78 (115)
211 3qww_A SET and MYND domain-con 97.2 0.00056 1.9E-08 66.7 6.8 82 289-370 311-410 (433)
212 3qww_A SET and MYND domain-con 97.1 0.0027 9.4E-08 61.9 11.3 94 252-345 310-424 (433)
213 3qwp_A SET and MYND domain-con 97.0 0.0052 1.8E-07 59.9 12.4 101 246-346 293-414 (429)
214 3mkq_A Coatomer beta'-subunit; 97.0 0.027 9.1E-07 59.9 18.9 98 83-200 609-707 (814)
215 3ly7_A Transcriptional activat 96.9 0.018 6.1E-07 54.0 14.3 137 203-341 192-343 (372)
216 3ma5_A Tetratricopeptide repea 96.9 0.002 7E-08 48.4 6.7 58 174-231 7-67 (100)
217 1wy6_A Hypothetical protein ST 96.9 0.099 3.4E-06 40.7 15.2 140 216-374 18-157 (172)
218 2kc7_A BFR218_protein; tetratr 96.8 0.0075 2.6E-07 44.8 8.9 64 282-345 6-72 (99)
219 2kc7_A BFR218_protein; tetratr 96.7 0.0037 1.3E-07 46.6 6.8 59 314-372 6-65 (99)
220 3ly7_A Transcriptional activat 96.7 0.015 5.2E-07 54.5 11.6 133 236-372 190-340 (372)
221 1pc2_A Mitochondria fission pr 96.5 0.019 6.6E-07 46.3 10.0 65 306-370 30-99 (152)
222 3mkq_B Coatomer subunit alpha; 96.5 0.24 8.3E-06 40.9 16.6 104 81-201 13-116 (177)
223 3mkq_B Coatomer subunit alpha; 96.0 0.15 5.2E-06 42.1 12.7 127 184-334 15-141 (177)
224 2v5f_A Prolyl 4-hydroxylase su 95.9 0.044 1.5E-06 41.3 8.9 73 276-348 5-86 (104)
225 3bee_A Putative YFRE protein; 95.9 0.044 1.5E-06 40.3 8.4 68 273-340 3-75 (93)
226 3u64_A Protein TP_0956; tetrat 95.8 0.026 8.9E-07 50.8 8.1 87 292-378 179-276 (301)
227 3lvg_A Clathrin heavy chain 1; 95.7 0.00017 5.9E-09 69.0 -6.8 263 10-296 53-324 (624)
228 1pc2_A Mitochondria fission pr 95.1 0.078 2.7E-06 42.8 7.8 87 257-345 15-108 (152)
229 1qsa_A Protein (soluble lytic 95.0 3.5 0.00012 41.9 28.4 310 14-336 10-347 (618)
230 3lvg_A Clathrin heavy chain 1; 94.9 0.0057 1.9E-07 58.8 0.7 208 9-226 81-325 (624)
231 1nzn_A CGI-135 protein, fissio 94.8 0.22 7.4E-06 38.6 9.2 65 306-370 33-102 (126)
232 3u64_A Protein TP_0956; tetrat 94.1 0.21 7.1E-06 45.0 8.8 114 86-201 134-267 (301)
233 2v5f_A Prolyl 4-hydroxylase su 94.0 0.53 1.8E-05 35.1 10.0 64 105-168 6-75 (104)
234 4gns_B Protein CSD3, chitin bi 93.4 0.18 6.3E-06 52.2 8.1 54 316-369 345-398 (754)
235 1wy6_A Hypothetical protein ST 93.3 2.3 7.9E-05 33.2 14.3 59 209-268 95-153 (172)
236 1y8m_A FIS1; mitochondria, unk 92.6 3.1 0.00011 32.8 12.8 66 305-370 36-105 (144)
237 1nzn_A CGI-135 protein, fissio 92.0 1 3.5E-05 34.9 8.8 88 257-346 18-112 (126)
238 4h7y_A Dual specificity protei 91.8 0.53 1.8E-05 37.5 7.0 53 321-373 73-125 (161)
239 2p58_C Putative type III secre 91.6 2 6.9E-05 31.3 9.2 59 81-142 48-106 (116)
240 2uwj_G Type III export protein 91.4 1.9 6.5E-05 31.4 8.8 59 81-142 47-105 (115)
241 4h7y_A Dual specificity protei 91.2 2.3 7.8E-05 33.9 10.1 95 102-198 11-118 (161)
242 4ady_A RPN2, 26S proteasome re 91.0 5.1 0.00018 42.5 15.5 247 84-336 385-657 (963)
243 3ltm_A Alpha-REP4; protein eng 90.9 6.7 0.00023 33.2 18.6 183 26-217 17-200 (211)
244 3ltm_A Alpha-REP4; protein eng 90.6 7.1 0.00024 33.0 16.7 187 56-254 16-202 (211)
245 4ady_A RPN2, 26S proteasome re 89.4 11 0.00037 40.1 16.3 256 51-313 383-666 (963)
246 2p58_C Putative type III secre 89.1 3.3 0.00011 30.2 8.4 86 154-244 22-107 (116)
247 3lpz_A GET4 (YOR164C homolog); 88.8 14 0.00049 33.9 21.6 182 50-268 20-215 (336)
248 3txn_A 26S proteasome regulato 88.8 16 0.00056 34.5 20.6 288 45-373 22-345 (394)
249 3ltj_A Alpharep-4; protein eng 88.7 9.7 0.00033 31.8 19.1 149 34-190 20-168 (201)
250 2wpv_A GET4, UPF0363 protein Y 88.6 14 0.00048 33.6 20.7 182 50-268 21-216 (312)
251 2uwj_G Type III export protein 88.1 3 0.0001 30.3 7.7 86 154-244 21-106 (115)
252 2ff4_A Probable regulatory pro 87.8 1.4 4.7E-05 42.1 7.9 68 312-379 175-247 (388)
253 3o48_A Mitochondria fission 1 87.7 4.2 0.00014 31.6 9.0 65 306-370 38-106 (134)
254 1v54_E Cytochrome C oxidase po 87.5 2.4 8.1E-05 31.1 7.0 62 221-284 26-87 (109)
255 3ffl_A Anaphase-promoting comp 87.0 3.4 0.00012 33.6 8.5 26 278-303 124-149 (167)
256 3ltj_A Alpharep-4; protein eng 86.8 13 0.00043 31.1 17.3 176 64-251 19-194 (201)
257 3lpz_A GET4 (YOR164C homolog); 86.3 20 0.00068 32.9 22.7 168 176-370 37-215 (336)
258 4fhn_B Nucleoporin NUP120; pro 85.2 20 0.00068 39.6 16.5 122 245-372 817-968 (1139)
259 4gns_B Protein CSD3, chitin bi 84.8 27 0.00092 36.2 16.0 51 250-303 347-398 (754)
260 3ffl_A Anaphase-promoting comp 84.6 7.4 0.00025 31.6 9.3 113 242-368 22-148 (167)
261 1v54_E Cytochrome C oxidase po 83.3 8 0.00027 28.4 8.0 63 119-182 25-87 (109)
262 2ff4_A Probable regulatory pro 83.0 5.9 0.0002 37.6 9.8 55 145-200 177-231 (388)
263 2y69_E Cytochrome C oxidase su 81.7 5.4 0.00018 31.0 7.0 70 223-303 71-140 (152)
264 4fhn_B Nucleoporin NUP120; pro 81.3 55 0.0019 36.0 18.0 87 140-226 900-992 (1139)
265 4b4t_P 26S proteasome regulato 80.2 44 0.0015 32.2 16.7 185 118-302 30-244 (445)
266 3esl_A Checkpoint serine/threo 78.4 21 0.00071 30.0 10.2 81 294-375 62-148 (202)
267 1zbp_A Hypothetical protein VP 77.6 5.5 0.00019 35.3 6.8 55 286-340 7-63 (273)
268 2qx5_A Nucleoporin NIC96; mRNA 75.8 44 0.0015 34.1 13.8 87 283-369 450-565 (661)
269 1zbp_A Hypothetical protein VP 74.4 36 0.0012 30.1 11.1 53 215-268 7-59 (273)
270 2y69_E Cytochrome C oxidase su 74.3 19 0.00064 28.0 8.0 60 122-182 71-130 (152)
271 4b4t_P 26S proteasome regulato 71.4 75 0.0026 30.6 23.8 142 87-232 30-204 (445)
272 4a1g_A Mitotic checkpoint seri 70.3 39 0.0013 26.9 9.6 80 293-375 52-134 (152)
273 2wvi_A Mitotic checkpoint seri 65.5 49 0.0017 26.7 9.4 50 326-375 78-129 (164)
274 4b4t_S RPN3, 26S proteasome re 65.2 1E+02 0.0035 30.2 13.1 62 173-234 230-299 (523)
275 3esl_A Checkpoint serine/threo 63.7 65 0.0022 27.0 10.0 60 154-213 94-154 (202)
276 4b4t_R RPN7, 26S proteasome re 63.6 74 0.0025 30.4 12.1 96 207-302 133-234 (429)
277 1wdy_A 2-5A-dependent ribonucl 63.3 62 0.0021 28.1 11.0 19 80-98 9-27 (285)
278 1oyz_A Hypothetical protein YI 62.9 79 0.0027 27.7 22.4 17 173-189 141-157 (280)
279 3mv2_A Coatomer subunit alpha; 62.3 83 0.0028 28.6 11.1 61 298-372 195-257 (325)
280 1oyz_A Hypothetical protein YI 62.0 82 0.0028 27.6 21.8 220 35-268 30-262 (280)
281 3o48_A Mitochondria fission 1 61.5 54 0.0019 25.4 9.3 29 314-342 84-112 (134)
282 2wpv_A GET4, UPF0363 protein Y 61.0 97 0.0033 28.1 22.8 170 175-370 34-216 (312)
283 1y8m_A FIS1; mitochondria, unk 60.9 59 0.002 25.6 11.3 72 273-344 36-113 (144)
284 3txn_A 26S proteasome regulato 59.6 1.2E+02 0.004 28.6 25.5 154 179-336 104-283 (394)
285 4b4t_R RPN7, 26S proteasome re 59.0 23 0.00079 34.0 7.6 95 242-336 133-236 (429)
286 3eiq_C Programmed cell death p 56.8 1.2E+02 0.0042 28.0 18.3 69 45-114 57-129 (358)
287 1wdy_A 2-5A-dependent ribonucl 52.0 1.2E+02 0.004 26.2 13.2 24 15-38 6-29 (285)
288 2nsz_A Programmed cell death p 50.0 36 0.0012 26.2 6.0 63 177-239 10-77 (129)
289 2d2s_A Exocyst complex compone 49.5 88 0.003 27.0 9.0 87 109-198 23-115 (235)
290 2nsz_A Programmed cell death p 49.4 64 0.0022 24.8 7.3 60 77-136 11-75 (129)
291 4a1g_A Mitotic checkpoint seri 45.9 1.1E+02 0.0038 24.3 8.9 50 123-172 84-134 (152)
292 4aez_C MAD3, mitotic spindle c 44.2 75 0.0026 27.1 7.4 51 325-375 131-183 (223)
293 3eu9_A Huntingtin-interacting 44.0 1.4E+02 0.0047 24.9 9.7 48 21-69 16-66 (240)
294 1n11_A Ankyrin; clathrin, BAND 43.3 2.1E+02 0.0073 26.8 12.5 331 15-375 15-370 (437)
295 4gq2_M Nucleoporin NUP120; bet 43.3 2.8E+02 0.0094 29.7 13.5 52 79-131 816-867 (950)
296 2l0z_A Glycoprotein G2; zinc-b 42.1 7.7 0.00026 22.6 0.6 17 494-510 12-29 (42)
297 2ion_A PDCD4, programmed cell 41.3 33 0.0011 27.3 4.6 62 177-238 12-78 (152)
298 2r9g_A AAA ATPase, central reg 40.9 1.6E+02 0.0054 24.6 8.8 64 107-171 14-85 (204)
299 2ion_A PDCD4, programmed cell 40.8 58 0.002 25.9 6.0 60 77-136 13-77 (152)
300 2k0q_A Putative uncharacterize 38.5 11 0.00038 25.1 1.1 22 487-508 8-29 (74)
301 2qx5_A Nucleoporin NIC96; mRNA 37.7 3.4E+02 0.012 27.5 17.7 80 48-130 300-382 (661)
302 2pk8_A Uncharacterized protein 37.4 28 0.00097 24.7 3.0 48 398-453 12-59 (103)
303 3mkr_B Coatomer subunit alpha; 36.5 1.3E+02 0.0046 27.2 8.2 60 299-372 187-248 (320)
304 2d2s_A Exocyst complex compone 36.0 96 0.0033 26.8 7.0 29 273-301 88-116 (235)
305 3kea_A K1L; tropism, ANK repea 35.8 2.2E+02 0.0076 24.8 10.2 91 282-377 132-223 (285)
306 3bge_A Predicted ATPase; struc 34.5 2E+02 0.0069 23.9 8.3 46 108-153 8-56 (201)
307 3ygs_P Procaspase 9; apoptosis 34.1 48 0.0016 24.0 4.1 39 87-125 51-89 (97)
308 3b7b_A Euchromatic histone-lys 33.7 2.1E+02 0.0071 23.8 9.8 81 17-99 14-100 (237)
309 3hra_A Ankyrin repeat family p 32.5 2E+02 0.0067 23.2 9.6 16 84-99 13-28 (201)
310 1ug3_A EIF4GI, eukaryotic prot 30.4 3.1E+02 0.011 24.9 12.7 26 46-71 15-40 (339)
311 3ctd_A Putative ATPase, AAA fa 30.1 2.5E+02 0.0085 23.6 8.4 66 105-170 33-106 (213)
312 3kea_A K1L; tropism, ANK repea 29.6 80 0.0027 27.9 5.8 178 16-199 33-217 (285)
313 2fe3_A Peroxide operon regulat 29.4 1.2E+02 0.004 23.7 6.1 62 230-293 12-73 (145)
314 3ygs_P Procaspase 9; apoptosis 29.3 60 0.002 23.4 3.9 34 26-59 52-85 (97)
315 1k1a_A B-cell lymphoma 3-encod 28.8 2.5E+02 0.0086 23.3 9.8 180 109-300 11-204 (241)
316 4b4t_S RPN3, 26S proteasome re 28.2 1.6E+02 0.0054 28.9 7.7 63 240-302 231-296 (523)
317 2fe3_A Peroxide operon regulat 28.2 1.7E+02 0.0058 22.7 6.9 62 129-191 12-73 (145)
318 2zu6_B Programmed cell death p 27.8 3.4E+02 0.011 24.4 12.0 60 208-268 169-230 (307)
319 1qsa_A Protein (soluble lytic 27.7 4.8E+02 0.016 26.2 33.1 338 18-375 79-483 (618)
320 4aez_C MAD3, mitotic spindle c 27.4 1.9E+02 0.0066 24.6 7.2 52 222-274 131-183 (223)
321 3e3v_A Regulatory protein RECX 26.3 2.6E+02 0.0089 22.7 8.9 28 157-184 51-78 (177)
322 3bu8_A Telomeric repeat-bindin 26.1 1.9E+02 0.0067 24.4 6.7 47 256-302 88-140 (235)
323 1bpo_A Protein (clathrin); cla 25.4 4.6E+02 0.016 25.2 10.6 37 165-201 352-388 (494)
324 1qc6_A EVH1 domain from ENA/VA 25.1 22 0.00075 27.5 0.9 41 459-507 44-88 (130)
325 2wvi_A Mitotic checkpoint seri 24.7 2.7E+02 0.0093 22.3 8.9 54 122-175 78-132 (164)
326 2yru_A Steroid receptor RNA ac 24.3 1.3E+02 0.0044 22.7 5.0 43 126-168 48-90 (118)
327 2xig_A Ferric uptake regulatio 24.2 2.4E+02 0.0083 22.0 7.1 63 128-191 16-78 (150)
328 3bqo_A Telomeric repeat-bindin 23.9 3.1E+02 0.011 22.8 8.2 52 292-343 94-152 (211)
329 2lo3_A SAGA-associated factor 23.9 18 0.0006 21.3 0.1 12 466-477 15-26 (44)
330 3ljn_A Hypothetical protein; a 23.5 4.1E+02 0.014 23.9 10.0 14 288-301 253-266 (364)
331 4gq2_M Nucleoporin NUP120; bet 23.5 6.9E+02 0.024 26.6 15.0 128 48-188 816-950 (950)
332 3i5p_A Nucleoporin NUP170; hel 23.4 5.3E+02 0.018 25.2 13.8 67 306-372 176-247 (525)
333 2p1h_A APAF-1, apoptotic prote 22.3 2.1E+02 0.0071 20.1 5.8 35 187-221 49-83 (94)
334 2xig_A Ferric uptake regulatio 22.3 1.6E+02 0.0056 23.0 5.7 62 230-293 17-78 (150)
335 3ljn_A Hypothetical protein; a 21.2 3.3E+02 0.011 24.5 8.7 81 285-367 179-266 (364)
336 3cqc_A Nuclear pore complex pr 21.0 2.4E+02 0.0081 24.9 6.9 195 209-422 38-263 (270)
337 4ets_A Ferric uptake regulatio 20.7 1.4E+02 0.0047 23.9 5.0 71 222-293 14-86 (162)
338 2p1h_A APAF-1, apoptotic prote 20.4 1.6E+02 0.0053 20.8 4.8 38 86-123 49-86 (94)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.8e-35 Score=306.38 Aligned_cols=360 Identities=10% Similarity=0.016 Sum_probs=309.1
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHhcCCCC-------------------ChhHHHHHHHHHHHcCChHHHHHHHcc
Q 010405 7 FAYDVFVKNSLIQFYSVCGRVRDARWVFDESDDL-------------------DVVSWNSMINGYVRNGEILEGLKLFDK 67 (511)
Q Consensus 7 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-------------------~~~~~~~li~~~~~~g~~~~A~~~~~~ 67 (511)
.++|+.+++.++.+|.++|++++|+++|+++.+. ++.+|+.++.+|.+.|++++|+++|++
T Consensus 146 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 225 (597)
T 2xpi_A 146 YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKE 225 (597)
T ss_dssp GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3567777888888888888888888888754333 367788888888888888888888887
Q ss_pred CCC--CC-hhHH--------------------------------------HHHHHHHHhcCCHHHHHHHHhhCCC--CCh
Q 010405 68 MPQ--RN-DVSW--------------------------------------NSILGGLVRFGSVDDACRVFNQMPK--RSL 104 (511)
Q Consensus 68 m~~--~~-~~~~--------------------------------------~~li~~~~~~g~~~~A~~~~~~~~~--~~~ 104 (511)
|.+ |+ ...+ +.++.+|.+.|++++|.++|+++.+ ++.
T Consensus 226 ~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 305 (597)
T 2xpi_A 226 ALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSS 305 (597)
T ss_dssp HHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCH
T ss_pred HHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchH
Confidence 754 22 2222 2224455677788888888888876 688
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 010405 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMY 184 (511)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 184 (511)
.+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.++...|++++|.++++.+.+.. +.+..+++.++.+|
T Consensus 306 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 383 (597)
T 2xpi_A 306 DLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYY 383 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 899999999999999999999999998765 4478889999999999999999999999998764 56789999999999
Q ss_pred HhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010405 185 AKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261 (511)
Q Consensus 185 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 261 (511)
.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +++..++..++.+|.+.|++++|.+
T Consensus 384 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 462 (597)
T 2xpi_A 384 LCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANE 462 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999998753 467799999999999999999999999999864 3478899999999999999999999
Q ss_pred HHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCchhHHHHHHH
Q 010405 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-------PMKPD--NVIWGTLLGACRVHRNAEMGQRIGN 332 (511)
Q Consensus 262 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~ 332 (511)
+|+++.+. .+.+..+|..++.+|.+.|++++|.++|+++ +..|+ ..+|..+..+|...|++++|++.++
T Consensus 463 ~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 540 (597)
T 2xpi_A 463 YLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540 (597)
T ss_dssp HHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999873 3446889999999999999999999999987 44787 7899999999999999999999999
Q ss_pred HHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010405 333 MLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 333 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 371 (511)
++.+..|+++.+|..++.+|.+.|++++|.+.++++.+.
T Consensus 541 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 541 QGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999874
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.4e-35 Score=302.42 Aligned_cols=357 Identities=10% Similarity=-0.042 Sum_probs=317.9
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhcCC--CCChhHHHHHHHHHHHcCChHHHHHHHccCC--CCChhHHHHHHHHHH
Q 010405 9 YDVFVKNSLIQFYSVCGRVRDARWVFDESD--DLDVVSWNSMINGYVRNGEILEGLKLFDKMP--QRNDVSWNSILGGLV 84 (511)
Q Consensus 9 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~ 84 (511)
+++..++.++..|.+.|++++|+.+|+++. .||..+|..++.+|.+.|++++|+.+|+++. .++..+++.++.+|.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLV 161 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHH
Confidence 577889999999999999999999999886 5788999999999999999999999999994 589999999999999
Q ss_pred hcCCHHHHHHHHhhCCCC-------------------ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHH
Q 010405 85 RFGSVDDACRVFNQMPKR-------------------SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145 (511)
Q Consensus 85 ~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 145 (511)
+.|++++|.++|+++... +..+|+.++.+|.+.|++++|+++|++|.+.+. .+...+..+
T Consensus 162 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l 240 (597)
T 2xpi_A 162 KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQL 240 (597)
T ss_dssp HTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred HHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHHH
Confidence 999999999999965433 478999999999999999999999999988642 233333332
Q ss_pred --------------------------------------HHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 010405 146 --------------------------------------LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC 187 (511)
Q Consensus 146 --------------------------------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 187 (511)
+..|.+.|++++|.++|+.+.+. +++..+++.++.+|.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 318 (597)
T 2xpi_A 241 VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVR 318 (597)
T ss_dssp HHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHT
T ss_pred HHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHh
Confidence 44556788999999999998876 58899999999999999
Q ss_pred CCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010405 188 GSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264 (511)
Q Consensus 188 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 264 (511)
|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|..+++++.... +.+..++..++..|.+.|++++|.++|+
T Consensus 319 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 397 (597)
T 2xpi_A 319 SRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFS 397 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 999999999999863 477899999999999999999999999998653 4468899999999999999999999999
Q ss_pred HchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCc
Q 010405 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMK-PDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD 342 (511)
Q Consensus 265 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 342 (511)
++.+. .+.+..+|+.++.+|.+.|++++|.++|+++ ... ++..+|..++.+|...|++++|.++|+++.+..|.++
T Consensus 398 ~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 475 (597)
T 2xpi_A 398 KSSTM--DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDP 475 (597)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCH
T ss_pred HHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 99872 2345889999999999999999999999987 333 4788999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010405 343 GRYILLSNIYVETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 343 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 371 (511)
.+|..++.+|.+.|++++|.++++++.+.
T Consensus 476 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 476 LLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999775
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1e-29 Score=255.32 Aligned_cols=184 Identities=14% Similarity=0.181 Sum_probs=160.2
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC---------HHHHHHHHHHHHHcCCCccHH
Q 010405 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA---------LDYGNWVYSYIQKKCIKLDSI 175 (511)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 175 (511)
..++.+|.+|++.|++++|+++|++|.+.|++||..||++||.+|+..+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45788888888889999999999999888888999999999888886654 678888888888888888989
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC----CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 010405 176 LCAALIDMYAKCGSIDLAMQVFHSYGD----KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACS 251 (511)
Q Consensus 176 ~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 251 (511)
+|++||.+|++.|++++|.++|++|.+ ||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 999999999999999999988888864 7888899999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHc
Q 010405 252 HLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRA 289 (511)
Q Consensus 252 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 289 (511)
+.|++++|.++|++|.+ .+..|+..||+.++..|...
T Consensus 187 ~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999987 78899999999888888753
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=4.4e-27 Score=231.11 Aligned_cols=349 Identities=13% Similarity=0.043 Sum_probs=305.7
Q ss_pred HHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHccCCC---CChhHHHHHHHHHHhcCCHH
Q 010405 17 LIQFYSVCGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ---RNDVSWNSILGGLVRFGSVD 90 (511)
Q Consensus 17 li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~ 90 (511)
+...+.+.|++++|.+.|+.+. +.+...+..+...+.+.|++++|...++...+ .+..+|..+...|.+.|+++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 4566778999999999998764 44566788888889999999999999988764 46788999999999999999
Q ss_pred HHHHHHhhCCC--C-ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010405 91 DACRVFNQMPK--R-SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK 167 (511)
Q Consensus 91 ~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 167 (511)
+|...|+++.+ | +..+|..+..++.+.|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.++++.+
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999998753 4 45689999999999999999999999998863 33456777888899999999999999999998
Q ss_pred cCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CHHHH
Q 010405 168 KCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISP-DSISY 243 (511)
Q Consensus 168 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~ 243 (511)
.. +.+..++..+...|.+.|++++|.+.|+++.+ .+...|..+...+...|++++|+..|++.... .| +..++
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 240 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVH 240 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHH
Confidence 74 45678999999999999999999999998864 35567889999999999999999999999875 34 57788
Q ss_pred HHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhc
Q 010405 244 IAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PM-KPDNVIWGTLLGACRVH 321 (511)
Q Consensus 244 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~ 321 (511)
..+..++...|++++|...|+++.+. .+.+..+|..+...|.+.|++++|.+.|+++ .. .++..+|..+...+...
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 89999999999999999999999872 2334778999999999999999999999987 22 34778999999999999
Q ss_pred CchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010405 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 322 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 371 (511)
|++++|...++++.+..|+++.++..++.+|.+.|++++|.+.++++.+.
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999863
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=2.5e-26 Score=225.72 Aligned_cols=343 Identities=12% Similarity=0.045 Sum_probs=302.2
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHccCCC--C-ChhHHHHHHHHH
Q 010405 10 DVFVKNSLIQFYSVCGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ--R-NDVSWNSILGGL 83 (511)
Q Consensus 10 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~ 83 (511)
+...+..+...+...|++++|...++... +.+..+|..+...+.+.|++++|++.|+++.+ | +..+|..+..+|
T Consensus 32 ~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 111 (388)
T 1w3b_A 32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAAL 111 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHH
Confidence 45677778889999999999999998644 55778999999999999999999999999864 4 456799999999
Q ss_pred HhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 010405 84 VRFGSVDDACRVFNQMPK--R-SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNW 160 (511)
Q Consensus 84 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 160 (511)
.+.|++++|...|+++.+ | +...+..+...+...|++++|++.|+++.+.. +.+..+|..+...+...|++++|..
T Consensus 112 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 190 (388)
T 1w3b_A 112 VAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIH 190 (388)
T ss_dssp HHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999998763 4 45678889999999999999999999998863 3467899999999999999999999
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 010405 161 VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGIS 237 (511)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 237 (511)
.++++++.. +.+...+..+...+...|++++|...|++... .+..+|..+...|...|++++|+..|+++.+.+ +
T Consensus 191 ~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p 268 (388)
T 1w3b_A 191 HFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-P 268 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-S
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-C
Confidence 999999975 45678899999999999999999999997653 356789999999999999999999999999863 2
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 010405 238 PDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLL 315 (511)
Q Consensus 238 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll 315 (511)
.+..++..+..++...|++++|...|+++.+. .+.+..++..+...+.+.|++++|.+.++++ ...| +..++..+.
T Consensus 269 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 346 (388)
T 1w3b_A 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA 346 (388)
T ss_dssp SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 25678999999999999999999999999873 4567889999999999999999999999987 4455 577899999
Q ss_pred HHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCC
Q 010405 316 GACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLK 357 (511)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 357 (511)
..+...|++++|...++++.+..|+++..|..++..+...|+
T Consensus 347 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 347 SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999999999999999999999999998887764
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=2.3e-28 Score=245.52 Aligned_cols=200 Identities=14% Similarity=0.191 Sum_probs=171.9
Q ss_pred hHHHHHHHHHHHCCCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC---------H
Q 010405 121 KEALALFREMQSLDLEPNS-AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS---------I 190 (511)
Q Consensus 121 ~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~---------~ 190 (511)
..+..+.+++.+.++.+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455666778777766554 45888999999999999999999999999999999999999999987765 7
Q ss_pred HHHHHHHHhcCC----CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHc
Q 010405 191 DLAMQVFHSYGD----KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSM 266 (511)
Q Consensus 191 ~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 266 (511)
++|.++|++|.. ||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 889999999964 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhc
Q 010405 267 FDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM---PMKPDNVIWGTLLGACRVH 321 (511)
Q Consensus 267 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~ 321 (511)
.+ .|+.||..+|++|+++|++.|++++|.+++++| +..|+..||+.++..+...
T Consensus 167 ~~-~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VE-SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HH-TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred Hh-cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 98 899999999999999999999999999999999 7889999999999988653
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=6.9e-24 Score=215.92 Aligned_cols=356 Identities=9% Similarity=-0.083 Sum_probs=301.4
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHhcCC--CCChhHHHHHHHHHHHcCChHHHHHHHccCCC---CChhHHHHHHHHHHh
Q 010405 11 VFVKNSLIQFYSVCGRVRDARWVFDESD--DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ---RNDVSWNSILGGLVR 85 (511)
Q Consensus 11 ~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~ 85 (511)
...+..+...|.+.|++++|+..|+++. .||+.+|..+..++.+.|++++|++.|+++.+ .+..++..+..+|.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 3456677889999999999999999876 57899999999999999999999999998864 456789999999999
Q ss_pred cCCHHHHHHHHhhCCCCC--------------------------------------------------------------
Q 010405 86 FGSVDDACRVFNQMPKRS-------------------------------------------------------------- 103 (511)
Q Consensus 86 ~g~~~~A~~~~~~~~~~~-------------------------------------------------------------- 103 (511)
.|++++|...|+++...+
T Consensus 86 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred HhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 999999999998763211
Q ss_pred --------------------hhHHHHHHHHHHH---CCChhHHHHHHHHHHH-----CCCC--------CCHhHHHHHHH
Q 010405 104 --------------------LVSWVVLISGFAQ---NGRPKEALALFREMQS-----LDLE--------PNSAILVSLLS 147 (511)
Q Consensus 104 --------------------~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~~~~--------p~~~t~~~ll~ 147 (511)
...+..+...+.. .|++++|+..|+++.+ ..-. .+..++..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 2233333343443 8999999999999987 3112 23567888899
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHH
Q 010405 148 ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEA 224 (511)
Q Consensus 148 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 224 (511)
.+...|++++|...++.+.+.... ..++..+...|...|++++|.+.|+++.+ .+..+|..+...|...|++++|
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 323 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQA 323 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 999999999999999999988633 88899999999999999999999998765 3667899999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC--
Q 010405 225 FELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-- 302 (511)
Q Consensus 225 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-- 302 (511)
+..|+++..... .+...+..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|...++++
T Consensus 324 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 324 GKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp HHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999988643 25678888999999999999999999999873 2335678899999999999999999999887
Q ss_pred --CCCCC----HHHHHHHHHHHHh---cCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010405 303 --PMKPD----NVIWGTLLGACRV---HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 303 --~~~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 371 (511)
+..|+ ...|..+...+.. .|++++|...++++.+..|+++.++..++.+|.+.|++++|.+.+++..+.
T Consensus 401 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 22233 4488889999999 999999999999999999999999999999999999999999999988864
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=2e-23 Score=209.02 Aligned_cols=320 Identities=12% Similarity=0.072 Sum_probs=263.5
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHccCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHH
Q 010405 40 LDVVSWNSMINGYVRNGEILEGLKLFDKMPQ---RNDVSWNSILGGLVRFGSVDDACRVFNQMPK---RSLVSWVVLISG 113 (511)
Q Consensus 40 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 113 (511)
.++..|..+...+.+.|++++|+.+|+++.+ .+..++..+..+|.+.|++++|...|+++.+ .+..+|..++..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 3566788888888999999999999888764 4677888888899999999999999988753 356788889999
Q ss_pred HHHCCChhHHHHHHHHHHHCCCCCCH----hHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCccHHHH
Q 010405 114 FAQNGRPKEALALFREMQSLDLEPNS----AILVSL------------LSACAQLGALDYGNWVYSYIQKKCIKLDSILC 177 (511)
Q Consensus 114 ~~~~g~~~~A~~~~~~m~~~~~~p~~----~t~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 177 (511)
|.+.|++++|++.|+++.+. .|+. .++..+ ...+...|++++|...++.+.+.. +.+..++
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 180 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELR 180 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 99999999999999998875 3443 454444 444888999999999999998874 5578889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH-HHHHHH-------
Q 010405 178 AALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS-ISYIAV------- 246 (511)
Q Consensus 178 ~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l------- 246 (511)
..++.+|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|+..|+++... .|+. ..+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHH
Confidence 9999999999999999999998764 46788999999999999999999999999874 4443 334333
Q ss_pred -----HHHHhccCCHHHHHHHHHHchhhcCCCCC-----HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 010405 247 -----LSACSHLGWVEKGFYYFHSMFDVHGIKPE-----LDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTL 314 (511)
Q Consensus 247 -----l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 314 (511)
...|...|++++|..+|+.+.+. .|+ ..++..++.++.+.|++++|.+.++++ ...| +...|..+
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 335 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 78899999999999999999873 344 457889999999999999999999987 4445 67899999
Q ss_pred HHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHH------------HHHcC-----CchHHHHHHHH
Q 010405 315 LGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNI------------YVETL-----KGENAEEVRKT 367 (511)
Q Consensus 315 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~ 367 (511)
..+|...|++++|...++++.++.|+++.++..+..+ |...| +.+++.+.+++
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 9999999999999999999999999999999888843 55555 44556666654
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=3e-23 Score=207.66 Aligned_cols=346 Identities=12% Similarity=0.036 Sum_probs=281.2
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHccCCC---CChhHHHHHHHH
Q 010405 9 YDVFVKNSLIQFYSVCGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ---RNDVSWNSILGG 82 (511)
Q Consensus 9 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~ 82 (511)
.++..+..+...|.+.|++++|+.+|+++. +.+..+|..+..++...|++++|+..|+++.+ .+..++..+..+
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 356778999999999999999999999765 45788999999999999999999999999875 457889999999
Q ss_pred HHhcCCHHHHHHHHhhCCC--C-Ch---hHHHHHH------------HHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHH
Q 010405 83 LVRFGSVDDACRVFNQMPK--R-SL---VSWVVLI------------SGFAQNGRPKEALALFREMQSLDLEPNSAILVS 144 (511)
Q Consensus 83 ~~~~g~~~~A~~~~~~~~~--~-~~---~~~~~li------------~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 144 (511)
|.+.|++++|...|+++.+ | +. ..|..++ ..+.+.|++++|+..|+++.+.. +.+..++..
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 182 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELREL 182 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 9999999999999999865 3 33 5666654 44899999999999999998764 457889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CeeehHHH----------
Q 010405 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD--K-DVSAYTSA---------- 211 (511)
Q Consensus 145 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~l---------- 211 (511)
+..++...|++++|...++.+.+.. +.+..++..++.+|...|++++|.+.|+++.. | +...+..+
T Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 261 (450)
T 2y4t_A 183 RAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 261 (450)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998874 55788999999999999999999999998864 3 33445444
Q ss_pred --HHHHHHcCChHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHH
Q 010405 212 --IFGLAMNGHSIEAFELFENMKSKGISPD-----SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVD 284 (511)
Q Consensus 212 --i~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 284 (511)
...+...|++++|+..|+++... .|+ ...+..+..++.+.|++++|...++.+.+. .+.+...|..+..
T Consensus 262 ~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~ 337 (450)
T 2y4t_A 262 ESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAE 337 (450)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 78899999999999999999884 454 347888889999999999999999999872 2346889999999
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH------------HHhcC-----chhHHHHHHHH-HhhcCCCCch-
Q 010405 285 LLGRAGLLEEAENFIASM-PMKPD-NVIWGTLLGA------------CRVHR-----NAEMGQRIGNM-LIESDQNHDG- 343 (511)
Q Consensus 285 ~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~------------~~~~g-----~~~~a~~~~~~-~~~~~p~~~~- 343 (511)
+|...|++++|.+.++++ ...|+ ...+..+..+ |...| +.+++.+.+++ ..+..|++..
T Consensus 338 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~ 417 (450)
T 2y4t_A 338 AYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQN 417 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCS
T ss_pred HHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 999999999999999987 56664 4555555522 33334 66778888886 6667775421
Q ss_pred ---------hHHHHHHHHHHcCCchH
Q 010405 344 ---------RYILLSNIYVETLKGEN 360 (511)
Q Consensus 344 ---------~~~~l~~~~~~~g~~~~ 360 (511)
.+..+..+|...|+.+.
T Consensus 418 ~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 418 EEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred chHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 34455555555555443
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=2.3e-21 Score=198.47 Aligned_cols=355 Identities=10% Similarity=-0.014 Sum_probs=286.6
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHccCCC---CChhHHHHHHHHHH
Q 010405 11 VFVKNSLIQFYSVCGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ---RNDVSWNSILGGLV 84 (511)
Q Consensus 11 ~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~ 84 (511)
...+..+...|.+.|++++|+..|+++. +.++.+|..+..+|.+.|++++|++.|+++.+ .+..++..+...|.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 3557778889999999999999999765 45788999999999999999999999999864 45778889999999
Q ss_pred hcCCHHHHHHHHhhCCC-CChh----------------------------------------------------------
Q 010405 85 RFGSVDDACRVFNQMPK-RSLV---------------------------------------------------------- 105 (511)
Q Consensus 85 ~~g~~~~A~~~~~~~~~-~~~~---------------------------------------------------------- 105 (511)
..|++++|...|+.+.. |+..
T Consensus 105 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN 184 (537)
T ss_dssp HHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSC
T ss_pred HcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHh
Confidence 99999999998864421 1100
Q ss_pred -----------HHHHHHHHHH--------HCCChhHHHHHHHHHHHCCCCCC--------HhHHHHHHHHHHhcCCHHHH
Q 010405 106 -----------SWVVLISGFA--------QNGRPKEALALFREMQSLDLEPN--------SAILVSLLSACAQLGALDYG 158 (511)
Q Consensus 106 -----------~~~~li~~~~--------~~g~~~~A~~~~~~m~~~~~~p~--------~~t~~~ll~~~~~~~~~~~a 158 (511)
.+..+...+. ..|++++|+.+|+++.+.. |+ ..++..+...+...|++++|
T Consensus 185 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 185 TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp CCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 1111111111 1247889999999998753 43 23567777888899999999
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 010405 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG 235 (511)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 235 (511)
...++.+.+.. |+..++..+...|...|++++|.+.|+++.+ .+..+|..+...|...|++++|+..|+++....
T Consensus 263 ~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 340 (537)
T 3fp2_A 263 QVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340 (537)
T ss_dssp HHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 99999999874 4578899999999999999999999998764 466789999999999999999999999998854
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCC----C
Q 010405 236 ISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM----PMKP----D 307 (511)
Q Consensus 236 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p----~ 307 (511)
. .+...+..+...+...|++++|...++.+.+. .+.+...+..+...+.+.|++++|.+.++++ +..+ .
T Consensus 341 ~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 417 (537)
T 3fp2_A 341 P-ENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG 417 (537)
T ss_dssp T-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSST
T ss_pred C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHH
Confidence 2 24678888999999999999999999999873 2445778999999999999999999999886 1111 2
Q ss_pred HHHHHHHHHHHHhc----------CchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 308 NVIWGTLLGACRVH----------RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 308 ~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
...+..+...+... |++++|...++++.+..|+++.++..++.+|.+.|++++|.+.+++..+..
T Consensus 418 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 418 IGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp THHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 22344445667777 999999999999999999999999999999999999999999999987643
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.7e-21 Score=198.30 Aligned_cols=337 Identities=10% Similarity=-0.040 Sum_probs=281.8
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHccCCCCC------------
Q 010405 8 AYDVFVKNSLIQFYSVCGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRN------------ 72 (511)
Q Consensus 8 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------------ 72 (511)
.||+.++..+...|.+.|++++|...|+++. +.+..+|..+..++.+.|++++|+..|+++...+
T Consensus 36 ~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 115 (514)
T 2gw1_A 36 KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLE 115 (514)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHH
T ss_pred CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHH
Confidence 4789999999999999999999999999754 4567899999999999999999999998774211
Q ss_pred ----------------------------------------------------------------------hhHHHHHHHH
Q 010405 73 ----------------------------------------------------------------------DVSWNSILGG 82 (511)
Q Consensus 73 ----------------------------------------------------------------------~~~~~~li~~ 82 (511)
...+..+...
T Consensus 116 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (514)
T 2gw1_A 116 RNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLS 195 (514)
T ss_dssp HHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHH
Confidence 2222223333
Q ss_pred HHh---cCCHHHHHHHHhhCCC----------------C-ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHH
Q 010405 83 LVR---FGSVDDACRVFNQMPK----------------R-SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142 (511)
Q Consensus 83 ~~~---~g~~~~A~~~~~~~~~----------------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 142 (511)
+.. .|++++|...|+++.+ + +..+|..+...+...|++++|+..|+++.+.. |+..++
T Consensus 196 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~ 273 (514)
T 2gw1_A 196 NLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSY 273 (514)
T ss_dssp HHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHH
T ss_pred HHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHH
Confidence 333 8999999999988654 1 34578899999999999999999999998864 448889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcC
Q 010405 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNG 219 (511)
Q Consensus 143 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 219 (511)
..+..++...|++++|...++.+.+.. +.+..++..+...|...|++++|...|+++.+ .+..+|..+...|...|
T Consensus 274 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 352 (514)
T 2gw1_A 274 IYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYREN 352 (514)
T ss_dssp HHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcC
Confidence 999999999999999999999999874 45678899999999999999999999998753 46678899999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC----HhHHHHHHHHHHH---cCCH
Q 010405 220 HSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE----LDHYACMVDLLGR---AGLL 292 (511)
Q Consensus 220 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~---~g~~ 292 (511)
++++|+..|+++.... +.+..++..+...+...|++++|...++.+.+...-.++ ...+..+...+.+ .|++
T Consensus 353 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 431 (514)
T 2gw1_A 353 KFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENF 431 (514)
T ss_dssp CHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHH
T ss_pred CHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCH
Confidence 9999999999998753 235678888999999999999999999999873322233 3488999999999 9999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHH
Q 010405 293 EEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILL 348 (511)
Q Consensus 293 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 348 (511)
++|...++++ ...| +...|..+...+...|++++|...++++.+..|+++..+..+
T Consensus 432 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 432 IEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 9999999887 3334 677888899999999999999999999999999887766655
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=1e-19 Score=175.73 Aligned_cols=308 Identities=10% Similarity=0.030 Sum_probs=183.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHccCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHC
Q 010405 44 SWNSMINGYVRNGEILEGLKLFDKMPQ---RNDVSWNSILGGLVRFGSVDDACRVFNQMPK---RSLVSWVVLISGFAQN 117 (511)
Q Consensus 44 ~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 117 (511)
.|..+...+...|++++|+..|+++.+ .+..++..+...|...|++++|...|+++.+ .+...|..+...+...
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQ 84 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHc
Confidence 444444455555555555555554432 2344455555555555555555555555432 2344555566666666
Q ss_pred CChhHHHHHHHHHHHCCCC--CCHhHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 010405 118 GRPKEALALFREMQSLDLE--PNSAILVSL------------LSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDM 183 (511)
Q Consensus 118 g~~~~A~~~~~~m~~~~~~--p~~~t~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 183 (511)
|++++|+..|++..+.... .+...+..+ ...+...|++++|...++.+.+.. +.+..++..+...
T Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 163 (359)
T 3ieg_A 85 GKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAEC 163 (359)
T ss_dssp TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 6666666666655543210 122223222 455666677777777777766653 3455666667777
Q ss_pred HHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC-HHHHH------------HHH
Q 010405 184 YAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD-SISYI------------AVL 247 (511)
Q Consensus 184 y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~------------~ll 247 (511)
|...|++++|...|+++.+ .+..+|..+...|...|++++|...|++..+.. |+ ...+. .+.
T Consensus 164 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a 241 (359)
T 3ieg_A 164 FIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESA 241 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777766543 244566666677777777777777777766532 22 22221 224
Q ss_pred HHHhccCCHHHHHHHHHHchhhcCCCCCH--hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCc
Q 010405 248 SACSHLGWVEKGFYYFHSMFDVHGIKPEL--DHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRN 323 (511)
Q Consensus 248 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 323 (511)
..+...|++++|...++.+.+...-.+.. ..+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|+
T Consensus 242 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 321 (359)
T 3ieg_A 242 EELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEM 321 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence 55677788888888888777622111111 23445677777888888888887776 2234 56677777777888888
Q ss_pred hhHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q 010405 324 AEMGQRIGNMLIESDQNHDGRYILLSNIYVE 354 (511)
Q Consensus 324 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 354 (511)
+++|...++++.+..|+++..+..+..++..
T Consensus 322 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 322 YDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 8888888888888888777777666655543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=3.1e-19 Score=172.35 Aligned_cols=296 Identities=12% Similarity=0.060 Sum_probs=248.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 010405 72 NDVSWNSILGGLVRFGSVDDACRVFNQMPK---RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148 (511)
Q Consensus 72 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 148 (511)
|+..+..+...+.+.|++++|...|+++.+ .+..+|..+...+...|++++|+..|+++.+.. +.+...+..+..+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 456778888999999999999999998753 357789999999999999999999999998763 3367889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCC--ccHHHHHHH------------HHHHHhcCCHHHHHHHHHhcCC---CCeeehHHH
Q 010405 149 CAQLGALDYGNWVYSYIQKKCIK--LDSILCAAL------------IDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSA 211 (511)
Q Consensus 149 ~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------i~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~l 211 (511)
+...|++++|...++.+.+.... .+...+..+ ...|...|++++|.+.|+++.+ .+...|..+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 160 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELR 160 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 99999999999999999987420 345555555 5889999999999999998764 466788999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHH-----------
Q 010405 212 IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA----------- 280 (511)
Q Consensus 212 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----------- 280 (511)
...+...|++++|+..++++.... +.+..++..+...+...|++++|...|+...+.. +.+...+.
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHHHH
Confidence 999999999999999999998863 3467888899999999999999999999998732 22233332
Q ss_pred -HHHHHHHHcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 010405 281 -CMVDLLGRAGLLEEAENFIASM-PMKPD-N----VIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYV 353 (511)
Q Consensus 281 -~li~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 353 (511)
.+...+.+.|++++|.+.++++ ...|+ . ..+..+...+...|++++|...++++.+..|+++.++..++.+|.
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYL 317 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3367799999999999999887 33343 3 234456778999999999999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHHHhC
Q 010405 354 ETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 354 ~~g~~~~A~~~~~~m~~~ 371 (511)
..|++++|.+.+++..+.
T Consensus 318 ~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 318 IEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHhc
Confidence 999999999999999864
No 14
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.84 E-value=6.2e-19 Score=171.23 Aligned_cols=277 Identities=12% Similarity=-0.031 Sum_probs=201.5
Q ss_pred cCCHHHHHH-HHhhCCC--C-----ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHH
Q 010405 86 FGSVDDACR-VFNQMPK--R-----SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDY 157 (511)
Q Consensus 86 ~g~~~~A~~-~~~~~~~--~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 157 (511)
.|++++|.. .|++... + +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 455666665 5554432 1 23456666677777777777777777776653 3355666667777777777777
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CeeehHH---------------HHHHHHHcC
Q 010405 158 GNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD--K-DVSAYTS---------------AIFGLAMNG 219 (511)
Q Consensus 158 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------li~~~~~~g 219 (511)
|...++.+.+.. +.+..++..+...|...|++++|.+.|+++.. | +...+.. .+..+...|
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 777777776654 34566667777777777777777777766543 1 1122211 233334889
Q ss_pred ChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHH
Q 010405 220 HSIEAFELFENMKSKGISP-DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENF 298 (511)
Q Consensus 220 ~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 298 (511)
++++|+..|+++....... +..++..+...+...|++++|...|+.+.+. .+.+...+..+...|.+.|++++|.+.
T Consensus 196 ~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999998753221 4788889999999999999999999999872 234578899999999999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC-----------chhHHHHHHHHHHcCCchHHHHHH
Q 010405 299 IASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH-----------DGRYILLSNIYVETLKGENAEEVR 365 (511)
Q Consensus 299 ~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~ 365 (511)
++++ ...| +...|..+...+...|++++|...++++.+..|++ ..+|..++.+|...|++++|..++
T Consensus 274 ~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 353 (368)
T 1fch_A 274 YRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAAD 353 (368)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhH
Confidence 9987 3334 57789999999999999999999999999988877 789999999999999999999887
Q ss_pred H
Q 010405 366 K 366 (511)
Q Consensus 366 ~ 366 (511)
+
T Consensus 354 ~ 354 (368)
T 1fch_A 354 A 354 (368)
T ss_dssp T
T ss_pred H
Confidence 5
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=1.7e-18 Score=165.28 Aligned_cols=282 Identities=10% Similarity=-0.025 Sum_probs=169.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 010405 73 DVSWNSILGGLVRFGSVDDACRVFNQMPK---RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149 (511)
Q Consensus 73 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 149 (511)
...+..+...+...|++++|..+|+++.+ .+...+..++..+.+.|++++|+.+++++.+.. +.+...+..+...+
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYY 100 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHH
Confidence 33444444455555555555555555432 123344445555555566666666555555432 22445555555555
Q ss_pred HhcC-CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHH
Q 010405 150 AQLG-ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAF 225 (511)
Q Consensus 150 ~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 225 (511)
...| ++++|.+.++.+.+.. +.+...+..+...|...|++++|.+.|+++.+ .+..++..+...|...|++++|+
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAE 179 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHH
Confidence 5555 5666666665555543 23445555566666666666666666655442 23445555666666666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcC-------CCCCHhHHHHHHHHHHHcCCHHHHHHH
Q 010405 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG-------IKPELDHYACMVDLLGRAGLLEEAENF 298 (511)
Q Consensus 226 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~li~~~~~~g~~~~A~~~ 298 (511)
..|++..... +.+...+..+...+...|++++|...++.+.+... .+.....+..+...|.+.|++++|.+.
T Consensus 180 ~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (330)
T 3hym_B 180 RFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258 (330)
T ss_dssp HHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 6666666542 22455666666677777777777777766665221 123356777777788888888888887
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHH-HHcCC
Q 010405 299 IASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIY-VETLK 357 (511)
Q Consensus 299 ~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~ 357 (511)
+++. ...| +...|..+...+...|++++|...++++.+..|+++..+..++.++ ...|+
T Consensus 259 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 259 HRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCc
Confidence 7765 2223 4567777777788888888888888888888888877877777777 34444
No 16
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.83 E-value=9.1e-19 Score=179.17 Aligned_cols=334 Identities=9% Similarity=-0.027 Sum_probs=267.5
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHccCCC-CChh----------
Q 010405 9 YDVFVKNSLIQFYSVCGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ-RNDV---------- 74 (511)
Q Consensus 9 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~---------- 74 (511)
.++..+..+...|.+.|++++|++.|++.. +.+..+|..+...+...|++++|+..|+.+.. |+..
T Consensus 57 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 136 (537)
T 3fp2_A 57 NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLER 136 (537)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHH
Confidence 467889999999999999999999999765 55788899999999999999999999864421 1100
Q ss_pred -----------------------------------------------------------HHHHHHHHHHh--------cC
Q 010405 75 -----------------------------------------------------------SWNSILGGLVR--------FG 87 (511)
Q Consensus 75 -----------------------------------------------------------~~~~li~~~~~--------~g 87 (511)
....+...+.. .|
T Consensus 137 ~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~ 216 (537)
T 3fp2_A 137 NLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVAND 216 (537)
T ss_dssp HHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 11222222211 24
Q ss_pred CHHHHHHHHhhCCC--CC--------hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHH
Q 010405 88 SVDDACRVFNQMPK--RS--------LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDY 157 (511)
Q Consensus 88 ~~~~A~~~~~~~~~--~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 157 (511)
++++|..+|+++.+ |+ ..+|..+...+...|++++|+..|++..+. .|+..++..+...+...|++++
T Consensus 217 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 294 (537)
T 3fp2_A 217 LLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQE 294 (537)
T ss_dssp HHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHH
T ss_pred HHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHH
Confidence 78899999998765 32 235777888899999999999999999885 5668889999999999999999
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhC
Q 010405 158 GNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSK 234 (511)
Q Consensus 158 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 234 (511)
|...++.+.+.. +.+..++..+...|...|++++|.+.|+++.+ .+..+|..+...|...|++++|+..|+++...
T Consensus 295 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 373 (537)
T 3fp2_A 295 FFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK 373 (537)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999875 45788899999999999999999999998764 45678999999999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCC----CHhHHHHHHHHHHHc----------CCHHHHHHHHH
Q 010405 235 GISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP----ELDHYACMVDLLGRA----------GLLEEAENFIA 300 (511)
Q Consensus 235 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~----------g~~~~A~~~~~ 300 (511)
. +.+...+..+...+...|++++|...|+.+.+...-.+ ....+..+...+.+. |++++|...|+
T Consensus 374 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~ 452 (537)
T 3fp2_A 374 F-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLT 452 (537)
T ss_dssp C-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHH
T ss_pred C-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHH
Confidence 3 33566888899999999999999999999876321111 122344556778888 99999999999
Q ss_pred hC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHH
Q 010405 301 SM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYI 346 (511)
Q Consensus 301 ~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 346 (511)
+. ...| +...|..+...+...|++++|...++++.++.|.++....
T Consensus 453 ~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 453 KACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 87 3334 6778899999999999999999999999999998765543
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=5.2e-18 Score=161.83 Aligned_cols=264 Identities=11% Similarity=-0.022 Sum_probs=229.7
Q ss_pred CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 010405 102 RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181 (511)
Q Consensus 102 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 181 (511)
.+...+..++..+...|++++|+++|+++.+.. +.+...+..++.++...|++++|...++++.+.. +.+..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 456678888999999999999999999998764 4456677778889999999999999999999874 45778899999
Q ss_pred HHHHhcC-CHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHH
Q 010405 182 DMYAKCG-SIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVE 257 (511)
Q Consensus 182 ~~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 257 (511)
..|...| ++++|.+.|+++.+ .+..+|..+...+...|++++|+..|+++.+... .+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998765 3567899999999999999999999999988642 24566777888999999999
Q ss_pred HHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC----------CCCHHHHHHHHHHHHhcCchhH
Q 010405 258 KGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PM----------KPDNVIWGTLLGACRVHRNAEM 326 (511)
Q Consensus 258 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~ll~~~~~~g~~~~ 326 (511)
+|...++.+.+ -.+.+...+..+...+.+.|++++|...++++ .. ..+...|..+...+...|++++
T Consensus 177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999987 23445788999999999999999999999876 11 2345688899999999999999
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 327 GQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 327 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
|...++++.+..|+++.++..++.+|.+.|++++|.+.+++..+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999987764
No 18
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=1.6e-18 Score=166.46 Aligned_cols=302 Identities=12% Similarity=0.143 Sum_probs=126.4
Q ss_pred hcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-
Q 010405 23 VCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPK- 101 (511)
Q Consensus 23 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~- 101 (511)
+.|++++|.+.++++..|+ +|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|...++...+
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 5677888888888885553 7888888888888888888888654 5666788888888888888888886666554
Q ss_pred -CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 010405 102 -RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAAL 180 (511)
Q Consensus 102 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 180 (511)
+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|..+|..+ ..|..|
T Consensus 91 ~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~L 154 (449)
T 1b89_A 91 ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRL 154 (449)
T ss_dssp ------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHH
T ss_pred CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHH
Confidence 345667778888888888888777763 366678888888888888888888888765 367778
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 010405 181 IDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGF 260 (511)
Q Consensus 181 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 260 (511)
++++.+.|++++|.+.++++. ++.+|..++.+|...|+++.|......+. +.|+ -...++..|.+.|.+++|.
T Consensus 155 A~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad--~l~~lv~~Yek~G~~eEai 227 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELI 227 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHH--HHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHh--hHHHHHHHHHHCCCHHHHH
Confidence 888888888888888888773 67788888888888888888855544322 2333 3445777788888888888
Q ss_pred HHHHHchhhcCCCCCHhHHHHHHHHHHH--cCCHHHHHHHHHh-CCCCC------CHHHHHHHHHHHHhcCchhHHHHHH
Q 010405 261 YYFHSMFDVHGIKPELDHYACMVDLLGR--AGLLEEAENFIAS-MPMKP------DNVIWGTLLGACRVHRNAEMGQRIG 331 (511)
Q Consensus 261 ~~~~~~~~~~~~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~-~~~~p------~~~~~~~ll~~~~~~g~~~~a~~~~ 331 (511)
.+++.... .. +-....|+-|.-+|++ -+++.+.+++|.. +.+.| +...|..+...|...++++.|....
T Consensus 228 ~lLe~aL~-le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 228 TMLEAALG-LE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHHTT-ST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhC-Cc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 88877764 11 2335666666666665 3455556665543 23222 3556777777788888888776643
Q ss_pred HHHhhc------------CCCCchhHHHHHHHHH
Q 010405 332 NMLIES------------DQNHDGRYILLSNIYV 353 (511)
Q Consensus 332 ~~~~~~------------~p~~~~~~~~l~~~~~ 353 (511)
-.-... .+.+...|...+..|.
T Consensus 306 ~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl 339 (449)
T 1b89_A 306 MNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL 339 (449)
T ss_dssp HHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH
T ss_pred HhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH
Confidence 332211 3445555555555554
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.81 E-value=1.6e-16 Score=160.74 Aligned_cols=349 Identities=11% Similarity=-0.008 Sum_probs=295.8
Q ss_pred CcchHHHHHHHHHh----cCChHHHHHHHhcCC-CCChhHHHHHHHHHHH----cCChHHHHHHHccCCC-CChhHHHHH
Q 010405 10 DVFVKNSLIQFYSV----CGRVRDARWVFDESD-DLDVVSWNSMINGYVR----NGEILEGLKLFDKMPQ-RNDVSWNSI 79 (511)
Q Consensus 10 ~~~~~~~li~~~~~----~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-~~~~~~~~l 79 (511)
|+.....|...|.. .+++++|...|++.. ..++.++..|...|.. .+++++|++.|++..+ .++..+..|
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~L 117 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNL 117 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 56677778888888 899999999998654 4577889999999998 8999999999998865 467788889
Q ss_pred HHHHHh----cCCHHHHHHHHhhCCC-CChhHHHHHHHHHHH----CCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 010405 80 LGGLVR----FGSVDDACRVFNQMPK-RSLVSWVVLISGFAQ----NGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150 (511)
Q Consensus 80 i~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 150 (511)
..+|.. .+++++|...|++..+ .+..++..|...|.. .+++++|++.|++..+.| +...+..+...+.
T Consensus 118 g~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~ 194 (490)
T 2xm6_A 118 GVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYS 194 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHh
Confidence 999988 8899999999998765 467788889999988 889999999999998865 6788888998888
Q ss_pred h----cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CCeeehHHHHHHHHH----
Q 010405 151 Q----LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAK----CGSIDLAMQVFHSYGD-KDVSAYTSAIFGLAM---- 217 (511)
Q Consensus 151 ~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~---- 217 (511)
. .++.++|...+++..+.| +...+..|..+|.. .+++++|.+.|++..+ .+..++..+...|..
T Consensus 195 ~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~ 271 (490)
T 2xm6_A 195 RGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAG 271 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTS
T ss_pred cCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
Confidence 8 899999999999999875 56778888999987 8899999999998765 466678888888888
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc-----CCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcC--
Q 010405 218 NGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL-----GWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAG-- 290 (511)
Q Consensus 218 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-- 290 (511)
.++.++|+.+|++..+.| +...+..+...+... ++.++|..+|++..+ . .+...+..|...|.+.|
T Consensus 272 ~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~-~---~~~~a~~~lg~~y~~~g~~ 344 (490)
T 2xm6_A 272 AKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE-Q---GDATAQANLGAIYFRLGSE 344 (490)
T ss_dssp SCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHSCCH
T ss_pred CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh-c---CCHHHHHHHHHHHHhCCCc
Confidence 899999999999998765 455666777777776 899999999999987 3 34567788888888867
Q ss_pred -CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHH----cCCchHH
Q 010405 291 -LLEEAENFIASMPMKPDNVIWGTLLGACRV----HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVE----TLKGENA 361 (511)
Q Consensus 291 -~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A 361 (511)
++++|.+.|++.-...++..+..|...+.. .+++++|...++++.+.. ++..+..|+.+|.. .+++++|
T Consensus 345 ~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A 422 (490)
T 2xm6_A 345 EEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQA 422 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 789999999887323578888888888888 899999999999998864 46889999999999 8999999
Q ss_pred HHHHHHHHhCCC
Q 010405 362 EEVRKTMRKRKI 373 (511)
Q Consensus 362 ~~~~~~m~~~g~ 373 (511)
.+.+++..+.+.
T Consensus 423 ~~~~~~A~~~~~ 434 (490)
T 2xm6_A 423 WAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHCCC
Confidence 999999988663
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.81 E-value=1.6e-18 Score=168.40 Aligned_cols=261 Identities=9% Similarity=-0.101 Sum_probs=202.4
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 010405 103 SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182 (511)
Q Consensus 103 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 182 (511)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++++.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34557777888888888888888888877653 3467777888888888888888888888887764 445777888888
Q ss_pred HHHhcCCHHHHHHHHHhcCC--C-C----------eeehHHHHHHHHHcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHH
Q 010405 183 MYAKCGSIDLAMQVFHSYGD--K-D----------VSAYTSAIFGLAMNGHSIEAFELFENMKSKGIS-PDSISYIAVLS 248 (511)
Q Consensus 183 ~y~~~g~~~~A~~~~~~~~~--~-~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~ 248 (511)
+|...|++++|.+.|+++.+ | + ...+..+...+...|++++|+..|+++...... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 88888888888888877654 1 1 223344577888899999999999999885322 25788889999
Q ss_pred HHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhH
Q 010405 249 ACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEM 326 (511)
Q Consensus 249 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 326 (511)
.+...|++++|...|+++.+. .+.+..++..+..+|.+.|++++|.+.|+++ ...| +..+|..+...+...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999872 3445789999999999999999999999887 3445 57789999999999999999
Q ss_pred HHHHHHHHhhcCCC------------CchhHHHHHHHHHHcCCchHHHHHHHH
Q 010405 327 GQRIGNMLIESDQN------------HDGRYILLSNIYVETLKGENAEEVRKT 367 (511)
Q Consensus 327 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 367 (511)
|...++++.++.|. +...|..|..++...|+.+.+.++.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999998776 367889999999999999998887653
No 21
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=7.5e-20 Score=175.71 Aligned_cols=331 Identities=13% Similarity=0.007 Sum_probs=172.3
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC--CChhHHHHHHHHHHhc
Q 010405 9 YDVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ--RNDVSWNSILGGLVRF 86 (511)
Q Consensus 9 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~ 86 (511)
+++.+|+.|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|+..++..++ +++.+.+.|+.+|.++
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Kl 107 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKT 107 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHh
Confidence 45569999999999999999999999764 6777999999999999999999998877765 5668899999999999
Q ss_pred CCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010405 87 GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQ 166 (511)
Q Consensus 87 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 166 (511)
|+++++.++++. |+..+|+.+...|...|.+++|..+|..+ ..|..++.++.+.|++++|.+.+.++
T Consensus 108 g~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA- 174 (449)
T 1b89_A 108 NRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA- 174 (449)
T ss_dssp -CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH-
T ss_pred CCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc-
Confidence 999999888854 77789999999999999999999999977 36899999999999999999999888
Q ss_pred HcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010405 167 KKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAV 246 (511)
Q Consensus 167 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 246 (511)
.++.+|..++.+|...|+++.|......+. ..+.-...++..|.+.|++++|+.+++...... +-....|+.+
T Consensus 175 -----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel 247 (449)
T 1b89_A 175 -----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTEL 247 (449)
T ss_dssp -----TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHH
T ss_pred -----CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHH
Confidence 278899999999999999999987777655 333334468889999999999999999887643 3345566666
Q ss_pred HHHHhc--cCCHHHHHHHHHHchhhcCCCC------CHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010405 247 LSACSH--LGWVEKGFYYFHSMFDVHGIKP------ELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC 318 (511)
Q Consensus 247 l~~~~~--~g~~~~a~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~ 318 (511)
.-++++ .+++.+.++.|..- -+++| +...|..++..|..-++++.|....-+-+ |+...-..+....
T Consensus 248 ~il~~ky~p~k~~ehl~~~~~~---ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~--~~a~~~~~f~~~~ 322 (449)
T 1b89_A 248 AILYSKFKPQKMREHLELFWSR---VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP--TDAWKEGQFKDII 322 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHSTT---SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST--TTTCCHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC--hhhhhhHHHHHHH
Confidence 555554 44555555555432 34555 46779999999999999999888665543 2333333344555
Q ss_pred HhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 010405 319 RVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMR 369 (511)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 369 (511)
.+..+.+.--+...--++..| ...+.|..++...=+...+.+++++..
T Consensus 323 ~kv~n~elyYkai~fyl~~~p---~~l~~ll~~l~~~ld~~r~v~~~~~~~ 370 (449)
T 1b89_A 323 TKVANVELYYRAIQFYLEFKP---LLLNDLLMVLSPRLDHTRAVNYFSKVK 370 (449)
T ss_dssp HHCSSTHHHHHHHHHHHHHCG---GGHHHHHHHHGGGCCHHHHHHHHHHTT
T ss_pred hchhHHHHHHHHHHHHHhcCH---HHHHHHHHHHHhccCcHHHHHHHHHcC
Confidence 566776665555555555555 557777777777667777776665443
No 22
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=2.5e-17 Score=165.80 Aligned_cols=359 Identities=12% Similarity=0.017 Sum_probs=231.6
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhcCC------------CCChhHHHHHHHHHHHcCChHHHHHHHccCCC-------
Q 010405 10 DVFVKNSLIQFYSVCGRVRDARWVFDESD------------DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ------- 70 (511)
Q Consensus 10 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------- 70 (511)
....||.|...|...|++++|++.|++.. .....+|+.+...|...|++++|+..|++..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 35678888899999999999988886431 23456788899999999999999888876642
Q ss_pred ----CChhHHHHHHHHHHhc--CCHHHHHHHHhhCCC--C-ChhHHHHHHHH---HHHCCChhHHHHHHHHHHHCCCCCC
Q 010405 71 ----RNDVSWNSILGGLVRF--GSVDDACRVFNQMPK--R-SLVSWVVLISG---FAQNGRPKEALALFREMQSLDLEPN 138 (511)
Q Consensus 71 ----~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~--~-~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~~~p~ 138 (511)
....++..+..++.+. +++++|...|++..+ | ++..+..+... +...++.++|++.|++..+.. +.+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 1244566555555554 468899999988653 3 44555555544 345677788888888877653 335
Q ss_pred HhHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CeeehHHH
Q 010405 139 SAILVSLLSACAQL----GALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD--K-DVSAYTSA 211 (511)
Q Consensus 139 ~~t~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~l 211 (511)
..++..+...+... ++.++|.+.+++..+.. +.+..++..+...|.+.|++++|...|++..+ | +..+|..+
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 287 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHH
Confidence 56666666555543 56778888888888774 45677888889999999999999999887754 3 44556666
Q ss_pred HHHHHHc-------------------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCC
Q 010405 212 IFGLAMN-------------------GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGI 272 (511)
Q Consensus 212 i~~~~~~-------------------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 272 (511)
...|... +..++|+..|++..... +.+..++..+...+...|++++|...|++..+ ...
T Consensus 288 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~-~~~ 365 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFS-KEL 365 (472)
T ss_dssp HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH-SCC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHh-cCC
Confidence 5555322 23567777777776643 22455677788888888999999999988876 222
Q ss_pred CCCH--hHHHHHHH-HHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHH
Q 010405 273 KPEL--DHYACMVD-LLGRAGLLEEAENFIASM-PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILL 348 (511)
Q Consensus 273 ~p~~--~~~~~li~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 348 (511)
.|.. ..+..+.. .+...|+.++|+..|++. .+.|+...+.. ....+.+++++.++.+|+++.+|..|
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~~~~~L 436 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRLSKNGADSEALHVL 436 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CTTHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 2221 12233332 234678888998888775 55565443322 23445667777888899999999999
Q ss_pred HHHHHHcCCchHHHHHHHHHHhCCCccCCceeE
Q 010405 349 SNIYVETLKGENAEEVRKTMRKRKIKRAPGCSL 381 (511)
Q Consensus 349 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 381 (511)
+.+|...|++++|.+.+++..+.+-......+|
T Consensus 437 G~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 437 AFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHCC----------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 999999999999999999988876544344444
No 23
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=7.9e-17 Score=150.94 Aligned_cols=271 Identities=12% Similarity=0.030 Sum_probs=208.3
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCh----hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHH
Q 010405 81 GGLVRFGSVDDACRVFNQMPKRSL----VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALD 156 (511)
Q Consensus 81 ~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~ 156 (511)
.-....|+++.|...+++....++ .....+..+|...|++++|+..++. . -+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHH
Confidence 334557888888888877665432 2445567888888888888876644 1 3566777888888888888888
Q ss_pred HHHHHHHHHHHcCC-CccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 010405 157 YGNWVYSYIQKKCI-KLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKG 235 (511)
Q Consensus 157 ~a~~~~~~~~~~~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 235 (511)
+|.+.++.+...+. |.+...+..+..+|...|++++|++.|++ ..+...+..++..|.+.|++++|.+.|+++.+.
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 159 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ- 159 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 88888888887764 44566777788889999999999999988 456678888899999999999999999999875
Q ss_pred CCCCHHHH---HHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHH
Q 010405 236 ISPDSISY---IAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVI 310 (511)
Q Consensus 236 ~~p~~~t~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~ 310 (511)
.|+.... ..++..+...|++++|..+|+++.+. .+.++..++.+..++.+.|++++|.+.|++. ...| +..+
T Consensus 160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 3554321 12334445569999999999999983 4567889999999999999999999999986 4445 6778
Q ss_pred HHHHHHHHHhcCchhH-HHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHH
Q 010405 311 WGTLLGACRVHRNAEM-GQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVR 365 (511)
Q Consensus 311 ~~~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 365 (511)
+..++..+...|+.++ +.++++++.+.+|+++.+ .+...+.+.++++..-|
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHHc
Confidence 9999999999999876 678999999999998754 34556666666665443
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.78 E-value=3.6e-18 Score=165.82 Aligned_cols=299 Identities=12% Similarity=0.029 Sum_probs=212.5
Q ss_pred CChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHH-HHccCCC--C-----ChhHHHHHHHHHHhcCCHHHHHHHH
Q 010405 25 GRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLK-LFDKMPQ--R-----NDVSWNSILGGLVRFGSVDDACRVF 96 (511)
Q Consensus 25 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~m~~--~-----~~~~~~~li~~~~~~g~~~~A~~~~ 96 (511)
+.++.+...|+.+...+.. ++...|++++|++ .|++..+ | +...+..+...|.+.|++++|...|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 87 (368)
T 1fch_A 15 DFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF 87 (368)
T ss_dssp --------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3445555555555433322 3344578888888 8876653 1 3456778888899999999999999
Q ss_pred hhCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc
Q 010405 97 NQMPK---RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD 173 (511)
Q Consensus 97 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 173 (511)
+++.+ .+..+|..+...|.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...++.+.+.... +
T Consensus 88 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~ 165 (368)
T 1fch_A 88 EAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-Y 165 (368)
T ss_dssp HHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-T
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-c
Confidence 88753 356788888999999999999999999888764 447788888889999999999999999998886432 2
Q ss_pred HHHHH----------------HHHHHHHhcCCHHHHHHHHHhcCC--C---CeeehHHHHHHHHHcCChHHHHHHHHHHH
Q 010405 174 SILCA----------------ALIDMYAKCGSIDLAMQVFHSYGD--K---DVSAYTSAIFGLAMNGHSIEAFELFENMK 232 (511)
Q Consensus 174 ~~~~~----------------~li~~y~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 232 (511)
...+. .+...+ ..|++++|...|+++.+ | +..+|..+...|...|++++|+..|+++.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 244 (368)
T 1fch_A 166 AHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 244 (368)
T ss_dssp GGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22221 233334 88999999999988764 3 46678889999999999999999999988
Q ss_pred hCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-----
Q 010405 233 SKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP----- 306 (511)
Q Consensus 233 ~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p----- 306 (511)
... +.+..++..+...+...|++++|...|+++.+. .+.+...+..+..+|.+.|++++|...|+++ ...|
T Consensus 245 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 321 (368)
T 1fch_A 245 SVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP 321 (368)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC---
T ss_pred HhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCc
Confidence 753 335678888999999999999999999999872 2345788999999999999999999999876 1112
Q ss_pred -------CHHHHHHHHHHHHhcCchhHHHHHHHHHhh
Q 010405 307 -------DNVIWGTLLGACRVHRNAEMGQRIGNMLIE 336 (511)
Q Consensus 307 -------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (511)
...+|..+..++...|+.++|..++++.++
T Consensus 322 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 322 RGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp ---CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred cccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 167899999999999999999998876544
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=3.6e-17 Score=155.74 Aligned_cols=258 Identities=8% Similarity=-0.090 Sum_probs=198.6
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 010405 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMY 184 (511)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 184 (511)
..|..+...+...|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 445666677777777777777777776643 3356667777777777777777777777777663 34566777777777
Q ss_pred HhcCCHHHHHHHHHhcCC--C-CeeehHHH--------------HH-HHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010405 185 AKCGSIDLAMQVFHSYGD--K-DVSAYTSA--------------IF-GLAMNGHSIEAFELFENMKSKGISPDSISYIAV 246 (511)
Q Consensus 185 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 246 (511)
...|++++|.+.|+++.+ | +...+..+ .. .+...|++++|+..++++.... +.+...+..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 777777777777776543 1 22223222 22 3667788999999999998764 3367788889
Q ss_pred HHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCch
Q 010405 247 LSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNA 324 (511)
Q Consensus 247 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 324 (511)
...+...|++++|...++.+.+. .+.+...+..+...+.+.|++++|.+.++++ ...| +...|..+...+...|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence 99999999999999999999872 2345788999999999999999999999887 3334 577899999999999999
Q ss_pred hHHHHHHHHHhhcCCC------------CchhHHHHHHHHHHcCCchHHHHHHHH
Q 010405 325 EMGQRIGNMLIESDQN------------HDGRYILLSNIYVETLKGENAEEVRKT 367 (511)
Q Consensus 325 ~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 367 (511)
++|...++++.+..|. ++.++..++.+|.+.|++++|..++++
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 9999999999999998 678999999999999999999998863
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.76 E-value=6e-18 Score=164.26 Aligned_cols=260 Identities=11% Similarity=0.013 Sum_probs=202.4
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 010405 72 NDVSWNSILGGLVRFGSVDDACRVFNQMPK---RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSA 148 (511)
Q Consensus 72 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 148 (511)
+...+..+...+.+.|++++|...|+++.+ .+..+|..+...|.+.|++++|+..|+++.+.. +.+..++..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 455688888889999999999999988753 366788999999999999999999999888763 4467888899999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCc---------cHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C---CeeehHHHHHH
Q 010405 149 CAQLGALDYGNWVYSYIQKKCIKL---------DSILCAALIDMYAKCGSIDLAMQVFHSYGD--K---DVSAYTSAIFG 214 (511)
Q Consensus 149 ~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~ 214 (511)
+...|++++|...++++.+..... ...++..+...|.+.|++++|.+.|+++.+ | +..+|..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 999999999999999988753110 122334458889999999999999998764 3 56688899999
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHH
Q 010405 215 LAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEE 294 (511)
Q Consensus 215 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 294 (511)
|...|++++|+..|+++.+.. +.+..++..+..++...|++++|...|+++.+. .+.+...+..+..+|.+.|++++
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999988753 335778899999999999999999999999872 23347889999999999999999
Q ss_pred HHHHHHhC-CCCC-------------CHHHHHHHHHHHHhcCchhHHHHHHHHHh
Q 010405 295 AENFIASM-PMKP-------------DNVIWGTLLGACRVHRNAEMGQRIGNMLI 335 (511)
Q Consensus 295 A~~~~~~~-~~~p-------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 335 (511)
|.+.|+++ ...| +...|..+..++...|+.+.+..+.++..
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 99999876 1111 25688999999999999998888776633
No 27
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.76 E-value=8.3e-16 Score=155.52 Aligned_cols=332 Identities=11% Similarity=-0.007 Sum_probs=278.1
Q ss_pred CcchHHHHHHHHHh----cCChHHHHHHHhcCC-CCChhHHHHHHHHHHH----cCChHHHHHHHccCCC-CChhHHHHH
Q 010405 10 DVFVKNSLIQFYSV----CGRVRDARWVFDESD-DLDVVSWNSMINGYVR----NGEILEGLKLFDKMPQ-RNDVSWNSI 79 (511)
Q Consensus 10 ~~~~~~~li~~~~~----~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-~~~~~~~~l 79 (511)
++..+..|..+|.. .+++++|...|++.. ..++.++..|...|.. .+++++|++.|++..+ .+...+..|
T Consensus 74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~L 153 (490)
T 2xm6_A 74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSM 153 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 56678888899998 899999999998755 4577888889999988 8899999999998865 467788889
Q ss_pred HHHHHh----cCCHHHHHHHHhhCCC-CChhHHHHHHHHHHH----CCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 010405 80 LGGLVR----FGSVDDACRVFNQMPK-RSLVSWVVLISGFAQ----NGRPKEALALFREMQSLDLEPNSAILVSLLSACA 150 (511)
Q Consensus 80 i~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 150 (511)
..+|.. .++.++|...|++..+ .+..++..|...|.+ .+++++|++.|++..+.| +..++..+...+.
T Consensus 154 g~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~ 230 (490)
T 2xm6_A 154 GDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYY 230 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 899988 8899999999998754 577889999999998 899999999999998865 6678888888887
Q ss_pred h----cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CCeeehHHHHHHHHHc---
Q 010405 151 Q----LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAK----CGSIDLAMQVFHSYGD-KDVSAYTSAIFGLAMN--- 218 (511)
Q Consensus 151 ~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~--- 218 (511)
. .++.++|...+++..+.| +...+..|..+|.. .++.++|.+.|++..+ .+..++..+...|...
T Consensus 231 ~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g 307 (490)
T 2xm6_A 231 FGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEG 307 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTT
T ss_pred cCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCC
Confidence 6 789999999999998875 45677788888888 8999999999998765 4666788888888887
Q ss_pred --CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHH----c
Q 010405 219 --GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG---WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGR----A 289 (511)
Q Consensus 219 --g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~ 289 (511)
++.++|+.+|++..+.| +...+..+...+...| +.++|.++|++..+ . .++..+..|...|.. .
T Consensus 308 ~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~-~---~~~~a~~~Lg~~y~~g~g~~ 380 (490)
T 2xm6_A 308 VAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA-K---GEKAAQFNLGNALLQGKGVK 380 (490)
T ss_dssp BCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSC
T ss_pred CcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCC
Confidence 89999999999998875 4566677777776656 78999999999987 2 467788899999998 8
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCchhHHHHHHHHHhhcCCC---CchhHHHHHHHHHH
Q 010405 290 GLLEEAENFIASMPMKPDNVIWGTLLGACRV----HRNAEMGQRIGNMLIESDQN---HDGRYILLSNIYVE 354 (511)
Q Consensus 290 g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 354 (511)
+++++|.+.|++.-...+...+..|...|.. .++.++|...|+++.+.+|+ ++.....|..++..
T Consensus 381 ~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 381 KDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 9999999999987323467788888888887 89999999999999998854 66666666655543
No 28
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.76 E-value=1e-15 Score=156.47 Aligned_cols=359 Identities=11% Similarity=0.045 Sum_probs=241.1
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHccCCC--CChhHHHHHHHH-
Q 010405 9 YDVFVKNSLIQFYSVCGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ--RNDVSWNSILGG- 82 (511)
Q Consensus 9 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~- 82 (511)
-|..+|..++. +.+.|++++|+.+|+++. +.+...|...+..+.+.|++++|..+|+++.+ |+...|...+..
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 36778899998 478899999999999865 44677899999999999999999999999976 777777777653
Q ss_pred HHhcCCHHHHHH----HHhhCC-----C-CChhHHHHHHHHHHH---------CCChhHHHHHHHHHHHCCCCCCHhHHH
Q 010405 83 LVRFGSVDDACR----VFNQMP-----K-RSLVSWVVLISGFAQ---------NGRPKEALALFREMQSLDLEPNSAILV 143 (511)
Q Consensus 83 ~~~~g~~~~A~~----~~~~~~-----~-~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~t~~ 143 (511)
....|+.+.|.+ +|++.. . ++...|...+....+ .|++++|..+|++..+....+....|.
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~ 169 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR 169 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 345677766654 666542 1 355678887776655 688999999999988731111123333
Q ss_pred HHHHHH-------------HhcCCHHHHHHHHHHHH------HcC---CCcc--------HHHHHHHHHHHHhc----CC
Q 010405 144 SLLSAC-------------AQLGALDYGNWVYSYIQ------KKC---IKLD--------SILCAALIDMYAKC----GS 189 (511)
Q Consensus 144 ~ll~~~-------------~~~~~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~li~~y~~~----g~ 189 (511)
...... ...++++.|..++.... +.. ++|+ ...|...+...... ++
T Consensus 170 ~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~ 249 (530)
T 2ooe_A 170 DYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTED 249 (530)
T ss_dssp HHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSC
T ss_pred HHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCc
Confidence 222211 12344566666655522 111 2333 24555554433221 22
Q ss_pred H----HHHHHHHHhcCC---CCeeehHHHHHHHHH-------cCChH-------HHHHHHHHHHhCCCCC-CHHHHHHHH
Q 010405 190 I----DLAMQVFHSYGD---KDVSAYTSAIFGLAM-------NGHSI-------EAFELFENMKSKGISP-DSISYIAVL 247 (511)
Q Consensus 190 ~----~~A~~~~~~~~~---~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~g~~p-~~~t~~~ll 247 (511)
. ++|..+|++... .+...|...+..+.+ .|+.+ +|..+|++..+. +.| +...+..++
T Consensus 250 ~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~p~~~~l~~~~~ 328 (530)
T 2ooe_A 250 QTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYA 328 (530)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-TCSSCHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-hCcccHHHHHHHH
Confidence 2 366677776654 355667777777665 57776 788888887652 233 466777777
Q ss_pred HHHhccCCHHHHHHHHHHchhhcCCCCC-H-hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH-HHhcC
Q 010405 248 SACSHLGWVEKGFYYFHSMFDVHGIKPE-L-DHYACMVDLLGRAGLLEEAENFIASM-PMKPD-NVIWGTLLGA-CRVHR 322 (511)
Q Consensus 248 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~-~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~-~~~~g 322 (511)
..+...|++++|..+|+.+.+ ..|+ . ..|..++..+.+.|++++|.++|++. ...|+ ...|...... +...|
T Consensus 329 ~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~ 405 (530)
T 2ooe_A 329 DYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK 405 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTC
T ss_pred HHHHhcCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcC
Confidence 777888888888888888876 3454 2 46777778788888888888888776 33332 2222222222 33578
Q ss_pred chhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 323 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
+.++|..+|+++++..|+++..+..++..+.+.|+.++|..++++....+
T Consensus 406 ~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 406 DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred ChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 88888888888888888888888888888888888888888888877654
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=2.7e-16 Score=147.34 Aligned_cols=246 Identities=10% Similarity=0.012 Sum_probs=201.6
Q ss_pred HHHHHHCCChhHHHHHHHHHHHCCCCCCH--hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 010405 111 ISGFAQNGRPKEALALFREMQSLDLEPNS--AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCG 188 (511)
Q Consensus 111 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 188 (511)
+.-....|++..|+..++..... .|+. .....+.+++...|+++.|...++. .-+|+..++..+...|...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 34456789999999998876543 3443 4556778999999999999986644 24667888999999999999
Q ss_pred CHHHHHHHHHhcC----CC-CeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010405 189 SIDLAMQVFHSYG----DK-DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263 (511)
Q Consensus 189 ~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 263 (511)
+.++|++.++++. .| +...+..+...|...|++++|++.+++ +.+...+..+...+.+.|++++|...|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999864 24 455677778899999999999999987 457788888999999999999999999
Q ss_pred HHchhhcCCCCCHhH---HHHHHHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcC
Q 010405 264 HSMFDVHGIKPELDH---YACMVDLLGRAGLLEEAENFIASM-P-MKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESD 338 (511)
Q Consensus 264 ~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 338 (511)
+.+.+. .|+... ...++..+...|++++|..+|+++ . ...+...|+.+..++...|++++|+..++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999873 355321 123345555569999999999998 2 23478889999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHcCCchH-HHHHHHHHHhC
Q 010405 339 QNHDGRYILLSNIYVETLKGEN-AEEVRKTMRKR 371 (511)
Q Consensus 339 p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~ 371 (511)
|+++.++..++..+...|+.++ +.++++++.+.
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999986 56888888763
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.72 E-value=2.6e-16 Score=149.80 Aligned_cols=223 Identities=12% Similarity=0.010 Sum_probs=118.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHccCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHH
Q 010405 43 VSWNSMINGYVRNGEILEGLKLFDKMPQ---RNDVSWNSILGGLVRFGSVDDACRVFNQMPK---RSLVSWVVLISGFAQ 116 (511)
Q Consensus 43 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 116 (511)
..|..+...+...|++++|+.+|+++.+ .+..++..+...|.+.|++++|...|+++.+ .+..+|..+...|..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 4455555666666666666666665542 2445555566666666666666666665532 245566666667777
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHhHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 010405 117 NGRPKEALALFREMQSLDLEPNSAILVSL--------------LS-ACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI 181 (511)
Q Consensus 117 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 181 (511)
.|++++|++.|+++.... +.+...+..+ .. .+...|++++|...++.+.+.. +.+..++..+.
T Consensus 102 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 179 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLG 179 (327)
T ss_dssp TTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 777777777776666542 1122222222 11 2445555666666666665553 23455555566
Q ss_pred HHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHH
Q 010405 182 DMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEK 258 (511)
Q Consensus 182 ~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 258 (511)
..|.+.|++++|.+.|+++.+ .+..+|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHH
Confidence 666666666666655554432 233445555555555555555555555554432 1134444455555555555555
Q ss_pred HHHHHHHchh
Q 010405 259 GFYYFHSMFD 268 (511)
Q Consensus 259 a~~~~~~~~~ 268 (511)
|...++.+.+
T Consensus 259 A~~~~~~a~~ 268 (327)
T 3cv0_A 259 AAKQLVRAIY 268 (327)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 31
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.71 E-value=1.4e-17 Score=172.25 Aligned_cols=159 Identities=13% Similarity=0.098 Sum_probs=128.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCC-------CCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHH
Q 010405 73 DVSWNSILGGLVRFGSVDDACRVFNQMP-------KRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSL 145 (511)
Q Consensus 73 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 145 (511)
..+||+||++|++.|++++|.++|++|. .||++|||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3589999999999999999999997753 589999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCH-HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCeeehHHHHHHHHHcC
Q 010405 146 LSACAQLGAL-DYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD-----KDVSAYTSAIFGLAMNG 219 (511)
Q Consensus 146 l~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g 219 (511)
|.++++.|+. +.|.+++++|.+.|+.||..+|+++++.+.+.+-++...+++..+.. +.+.+...|...|.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 9999999984 78999999999999999999999999877765444444333332221 12344555666666655
Q ss_pred C---------hHHHHHHHHHH
Q 010405 220 H---------SIEAFELFENM 231 (511)
Q Consensus 220 ~---------~~~A~~~~~~m 231 (511)
. .++-.++|++-
T Consensus 287 ~~s~pk~~~~~~~L~~~~~~Q 307 (1134)
T 3spa_A 287 RVSYPKLHLPLKTLQCLFEKQ 307 (1134)
T ss_dssp CCCCCCCSSCHHHHHHHHHHH
T ss_pred CCcCccccCCHHHHHHHHHHH
Confidence 2 34555555553
No 32
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.69 E-value=5.5e-14 Score=150.12 Aligned_cols=315 Identities=12% Similarity=0.078 Sum_probs=221.9
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 010405 15 NSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACR 94 (511)
Q Consensus 15 ~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~ 94 (511)
.-+...+...|.+++|..+|++... .....+.++. ..+++++|.++.++. .+..+|..+..++.+.|++++|..
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~-~~~A~~VLie---~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDV-NTSAVQVLIE---HIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC-HHHHHHHHHH---HHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 3345566666777777777776531 1222222322 566777777777765 345667788888888888888888
Q ss_pred HHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH
Q 010405 95 VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDS 174 (511)
Q Consensus 95 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 174 (511)
.|.+. .|...|..++..+.+.|++++|.+.|...++.. +++...+.++.+|++.++++....+. + .++.
T Consensus 1127 sYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ 1195 (1630)
T 1xi4_A 1127 SYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNN 1195 (1630)
T ss_pred HHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCH
Confidence 88664 566777778888888888888888887666543 33333335777788887777543332 2 3345
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 010405 175 ILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254 (511)
Q Consensus 175 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 254 (511)
..+..+.+.|...|++++|..+|... ..|..+...|.+.|++++|++.+++. -+..+|..+-.+|...|
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~ 1264 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGK 1264 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhh
Confidence 56666888888888888888888875 47888888888888888888888765 25678888888888888
Q ss_pred CHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh--cCchhHHHHH
Q 010405 255 WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRV--HRNAEMGQRI 330 (511)
Q Consensus 255 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~--~g~~~~a~~~ 330 (511)
++..|...... +..++..+..++..|.+.|.+++|+.+++.. +.+| ....|+-|...+.+ -++..++.+.
T Consensus 1265 Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~ 1338 (1630)
T 1xi4_A 1265 EFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLEL 1338 (1630)
T ss_pred HHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 88888775543 2345667778999999999999999999776 5554 34466555555544 4566677777
Q ss_pred HHHHhhcCC-----CCchhHHHHHHHHHHcCCchHHHH
Q 010405 331 GNMLIESDQ-----NHDGRYILLSNIYVETLKGENAEE 363 (511)
Q Consensus 331 ~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~ 363 (511)
|..-..+.| .+...|.-++..|.+.|+|+.|..
T Consensus 1339 f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1339 FWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 776665555 566788899999999999999984
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.69 E-value=2.4e-17 Score=170.54 Aligned_cols=132 Identities=17% Similarity=0.184 Sum_probs=111.7
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHH
Q 010405 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYG-------DKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSIS 242 (511)
Q Consensus 170 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 242 (511)
...-..+||+||++|++.|++++|.++|++|. .||++|||+||.+|++.|+.++|.++|++|...|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34446689999999999999999999997653 47999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCC-HHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 010405 243 YIAVLSACSHLGW-VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM 302 (511)
Q Consensus 243 ~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 302 (511)
|+++|.++++.|. .++|.++|++|.+ .|+.||..+|++++....+.+-++...++...+
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH-HTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 9999999999987 4788999999998 799999999999998887765555554443333
No 34
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.68 E-value=3.7e-14 Score=144.87 Aligned_cols=329 Identities=11% Similarity=0.074 Sum_probs=240.6
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHccCCC--C-ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHH
Q 010405 39 DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ--R-NDVSWNSILGGLVRFGSVDDACRVFNQMPK--RSLVSWVVLISG 113 (511)
Q Consensus 39 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~ 113 (511)
+.|..+|..++. +.+.|++++|..+|+++.+ | +...|..++..+.+.|++++|..+|++... |++..|...+..
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~ 88 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSY 88 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 447889999998 5889999999999999976 3 566899999999999999999999999865 677778877753
Q ss_pred -HHHCCChhHHHH----HHHHHHH-CCCCC-CHhHHHHHHHHHHh---------cCCHHHHHHHHHHHHHcCCCccHHHH
Q 010405 114 -FAQNGRPKEALA----LFREMQS-LDLEP-NSAILVSLLSACAQ---------LGALDYGNWVYSYIQKKCIKLDSILC 177 (511)
Q Consensus 114 -~~~~g~~~~A~~----~~~~m~~-~~~~p-~~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~ 177 (511)
....|+.++|.+ +|++... .|..| +...|...+..... .|+++.|..+|+++++........+|
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 345677777665 7776654 35444 45667776666544 68899999999999984211112344
Q ss_pred HHHHHHH-------------HhcCCHHHHHHHHHh------cCC-------CC--------eeehHHHHHHHHHc----C
Q 010405 178 AALIDMY-------------AKCGSIDLAMQVFHS------YGD-------KD--------VSAYTSAIFGLAMN----G 219 (511)
Q Consensus 178 ~~li~~y-------------~~~g~~~~A~~~~~~------~~~-------~~--------~~~~~~li~~~~~~----g 219 (511)
....... .+.++++.|..++.. ..+ |+ ...|...+...... +
T Consensus 169 ~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~ 248 (530)
T 2ooe_A 169 RDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTE 248 (530)
T ss_dssp HHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCS
T ss_pred HHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCC
Confidence 4333211 134567778777664 111 11 12455444333222 2
Q ss_pred Ch----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-------cCCHH-------HHHHHHHHchhhcCCCC-CHhHHH
Q 010405 220 HS----IEAFELFENMKSKGISPDSISYIAVLSACSH-------LGWVE-------KGFYYFHSMFDVHGIKP-ELDHYA 280 (511)
Q Consensus 220 ~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~p-~~~~~~ 280 (511)
+. .+|+.+|++..... +-+...|..+...+.. .|+++ +|..+|++..+ .+.| +...|.
T Consensus 249 ~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~--~~~p~~~~l~~ 325 (530)
T 2ooe_A 249 DQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS--TLLKKNMLLYF 325 (530)
T ss_dssp CSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT--TTCSSCHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHH--HhCcccHHHHH
Confidence 22 47888999988752 2356777777777764 79887 89999999985 3345 588899
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCCC-H-HHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHH-HHHcC
Q 010405 281 CMVDLLGRAGLLEEAENFIASM-PMKPD-N-VIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNI-YVETL 356 (511)
Q Consensus 281 ~li~~~~~~g~~~~A~~~~~~~-~~~p~-~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g 356 (511)
.++..+.+.|++++|.++|+++ ...|+ . ..|..++..+.+.|+.++|..+|+++.+..|.+...|...+.+ +...|
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~ 405 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK 405 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcC
Confidence 9999999999999999999987 44564 3 5899999999999999999999999999888776666655544 34689
Q ss_pred CchHHHHHHHHHHhC
Q 010405 357 KGENAEEVRKTMRKR 371 (511)
Q Consensus 357 ~~~~A~~~~~~m~~~ 371 (511)
+.++|.++++...+.
T Consensus 406 ~~~~A~~~~e~al~~ 420 (530)
T 2ooe_A 406 DKSVAFKIFELGLKK 420 (530)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHH
Confidence 999999999987664
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.67 E-value=4.8e-15 Score=135.76 Aligned_cols=224 Identities=10% Similarity=-0.041 Sum_probs=114.6
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--cc----HHHHH
Q 010405 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIK--LD----SILCA 178 (511)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 178 (511)
..|..+...+...|++++|+..|++..+.. .+..++..+..++...|++++|...+..+.+.... ++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 456667777777777777777777777665 56677777777777777777777777776664211 11 35556
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHH
Q 010405 179 ALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEK 258 (511)
Q Consensus 179 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 258 (511)
.+...|.+.|++++|.+.|++..+.+.. ...+...|++++|+..++++.... +.+...+..+...+...|++++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHH
Confidence 6666666666666666666554331110 123334444455555555444421 1122333444444444444444
Q ss_pred HHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhh
Q 010405 259 GFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIE 336 (511)
Q Consensus 259 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (511)
|...|+.+.+. .+.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++.+
T Consensus 158 A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 158 AVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44444444431 1122334444444444444444444444433 1112 233444444444444444444444444444
Q ss_pred cC
Q 010405 337 SD 338 (511)
Q Consensus 337 ~~ 338 (511)
..
T Consensus 236 ~~ 237 (258)
T 3uq3_A 236 KD 237 (258)
T ss_dssp HH
T ss_pred hC
Confidence 43
No 36
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.67 E-value=2.6e-13 Score=145.09 Aligned_cols=308 Identities=13% Similarity=0.061 Sum_probs=232.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhcCC-CCC-----hhHHHHHH---------------------------HHHHHcCChH
Q 010405 13 VKNSLIQFYSVCGRVRDARWVFDESD-DLD-----VVSWNSMI---------------------------NGYVRNGEIL 59 (511)
Q Consensus 13 ~~~~li~~~~~~g~~~~A~~~f~~~~-~~~-----~~~~~~li---------------------------~~~~~~g~~~ 59 (511)
--...+..|...|.+.+|++++++.. +++ ...-+.++ ..+...|.++
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyE 1066 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFE 1066 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHH
Confidence 33667788889999999999998765 222 22333333 3455667777
Q ss_pred HHHHHHccCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH
Q 010405 60 EGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNS 139 (511)
Q Consensus 60 ~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 139 (511)
+|..+|++....+ ...+.++ -..+++++|.++.++.. +..+|..+..++.+.|++++|++.|.+. -|.
T Consensus 1067 EAf~IYkKa~~~~-~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~ 1134 (1630)
T 1xi4_A 1067 EAFAIFRKFDVNT-SAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDP 1134 (1630)
T ss_pred HHHHHHHHcCCHH-HHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CCh
Confidence 8888877764211 1122222 26778888888887663 4677888999999999999999988553 377
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcC
Q 010405 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNG 219 (511)
Q Consensus 140 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 219 (511)
..|..++.+|.+.|++++|.+.+....+.. +++...+.++.+|++.+++++...+. ..++...|..+...|...|
T Consensus 1135 say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg 1209 (1630)
T 1xi4_A 1135 SSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEK 1209 (1630)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcC
Confidence 788889999999999999999998887764 33334445888899998888644443 3456667778888888999
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHH
Q 010405 220 HSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFI 299 (511)
Q Consensus 220 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 299 (511)
++++|..+|... ..|..+..++.+.|++++|.+.+++.. +..+|..+..+|...|++..|....
T Consensus 1210 ~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~Ef~LA~~cg 1273 (1630)
T 1xi4_A 1210 MYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEFRLAQMCG 1273 (1630)
T ss_pred CHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 999999999874 478888889999999999998888763 3578888888888899998888877
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHc
Q 010405 300 ASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVET 355 (511)
Q Consensus 300 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 355 (511)
..+. -++..+..++..|...|.+++|+.+++..+.++|.+...|.-|+.+|++.
T Consensus 1274 l~Ii--v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1274 LHIV--VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred Hhhh--cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC
Confidence 6543 35556668888899999999999999999999998888888888888775
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=9.7e-15 Score=133.68 Aligned_cols=220 Identities=11% Similarity=-0.029 Sum_probs=192.4
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C-------eeeh
Q 010405 139 SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD--K-D-------VSAY 208 (511)
Q Consensus 139 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~-------~~~~ 208 (511)
...+..+...+...|++++|...++.+++.. .+..++..+..+|...|++++|.+.|++..+ | + ..+|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4577888999999999999999999999987 7888999999999999999999999998765 2 1 4778
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHH
Q 010405 209 TSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGR 288 (511)
Q Consensus 209 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 288 (511)
..+...|...|++++|+..|++.... .|+. ..+...|++++|...++.+.+ ..+.+...+..+...+..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHH
Confidence 89999999999999999999999884 4553 345667889999999999987 223346788899999999
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHH
Q 010405 289 AGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRK 366 (511)
Q Consensus 289 ~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 366 (511)
.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++.++..++.+|.+.|++++|.+.++
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999987 3333 677899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhC
Q 010405 367 TMRKR 371 (511)
Q Consensus 367 ~m~~~ 371 (511)
+..+.
T Consensus 232 ~a~~~ 236 (258)
T 3uq3_A 232 AARTK 236 (258)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88763
No 38
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.63 E-value=1.1e-14 Score=134.79 Aligned_cols=241 Identities=10% Similarity=-0.065 Sum_probs=176.7
Q ss_pred HCCChhHHHHHHHHHHHCCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 010405 116 QNGRPKEALALFREMQSLDL---EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDL 192 (511)
Q Consensus 116 ~~g~~~~A~~~~~~m~~~~~---~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 192 (511)
..|++++|+..|+++.+... +.+..++..+..++...|++++|...++++++.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 34677888888887776531 1135667777777888888888888888887764 4467778888888888888888
Q ss_pred HHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhh
Q 010405 193 AMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDV 269 (511)
Q Consensus 193 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 269 (511)
|.+.|+++.+ .+..+|..+...|...|++++|+..|+++.+. .|+.......+..+...|++++|...+......
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888887654 35667888888888888888888888888774 455544445555567778999999999877762
Q ss_pred cCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCch
Q 010405 270 HGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKPD-----NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDG 343 (511)
Q Consensus 270 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 343 (511)
.+++...+ .++..+...++.++|.+.+++. ...|+ ...|..+...+...|++++|...++++.+..|++..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 23343344 4677777888889999988876 33332 467888888999999999999999999999987654
Q ss_pred hHHHHHHHHHHcCCchHHHHHH
Q 010405 344 RYILLSNIYVETLKGENAEEVR 365 (511)
Q Consensus 344 ~~~~l~~~~~~~g~~~~A~~~~ 365 (511)
.+ ..++...|++++|.+.+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 43 56777888888887765
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.63 E-value=9.2e-15 Score=130.68 Aligned_cols=194 Identities=13% Similarity=0.008 Sum_probs=134.1
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010405 172 LDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248 (511)
Q Consensus 172 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 248 (511)
++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+.. +.+...+..+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 4445555566666666666666666665443 234455666666666666666666666666542 123456666666
Q ss_pred HHhcc-----------CCHHHHHHHHHHchhhcCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 010405 249 ACSHL-----------GWVEKGFYYFHSMFDVHGIKP-ELDHYACMVDLLGRAGLLEEAENFIASM-PMKPDNVIWGTLL 315 (511)
Q Consensus 249 ~~~~~-----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll 315 (511)
++... |++++|...|++..+ ..| +...+..+..+|...|++++|.+.|++. ....+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 77777 999999999999887 234 4778888999999999999999999886 2126788899999
Q ss_pred HHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 010405 316 GACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMR 369 (511)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 369 (511)
.++...|++++|+..++++++..|+++.++..++.++...|++++|.+.+++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999887653
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.62 E-value=4.1e-14 Score=130.90 Aligned_cols=242 Identities=10% Similarity=-0.039 Sum_probs=118.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhc
Q 010405 78 SILGGLVRFGSVDDACRVFNQMPK---RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPN--SAILVSLLSACAQL 152 (511)
Q Consensus 78 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~ 152 (511)
.....+.+.|++++|...|++..+ .+...|..+...|...|++++|++.|++..+.+..|+ ..+|..+...+...
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 334444555555555555554432 1233445555555555555555555555544211111 11244444555555
Q ss_pred CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHH
Q 010405 153 GALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMK 232 (511)
Q Consensus 153 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 232 (511)
|++++|...++.+.+.. +.+..++..+...|...|++++|.+.|+ +..
T Consensus 88 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~-------------------------------~al 135 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYME-------------------------------KQI 135 (272)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHG-------------------------------GGC
T ss_pred ccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHH-------------------------------HHh
Confidence 55555555555554432 2233444444444444444444444444 444
Q ss_pred hCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCC---HHHHHHHHHhC----CCC
Q 010405 233 SKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGL---LEEAENFIASM----PMK 305 (511)
Q Consensus 233 ~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~----~~~ 305 (511)
+.. +.+...+..+...+...+++++|...|+.+.+. .+.+...+..+...+...|+ +++|...+++. ...
T Consensus 136 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 212 (272)
T 3u4t_A 136 RPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPG 212 (272)
T ss_dssp CSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGG
T ss_pred hcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcc
Confidence 321 112333333331222233555555555555541 11224444455555555554 44444444433 111
Q ss_pred CC------HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q 010405 306 PD------NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVE 354 (511)
Q Consensus 306 p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 354 (511)
|+ ...|..+...+...|++++|...++++.+++|+++.+...+......
T Consensus 213 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 213 GAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-----
T ss_pred cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcc
Confidence 22 24566677778888999999999999999999887776666554433
No 41
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.60 E-value=5.6e-13 Score=123.49 Aligned_cols=225 Identities=13% Similarity=-0.052 Sum_probs=143.5
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCccHHHHH
Q 010405 103 SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQ----LGALDYGNWVYSYIQKKCIKLDSILCA 178 (511)
Q Consensus 103 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 178 (511)
+..++..+...|...|++++|++.|++..+. .+..++..+...+.. .+++++|...+++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4556666777777777777777777777663 245566667777777 777777777777777664 556666
Q ss_pred HHHHHHHh----cCCHHHHHHHHHhcCC-CCeeehHHHHHHHHH----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010405 179 ALIDMYAK----CGSIDLAMQVFHSYGD-KDVSAYTSAIFGLAM----NGHSIEAFELFENMKSKGISPDSISYIAVLSA 249 (511)
Q Consensus 179 ~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 249 (511)
.+..+|.. .+++++|.+.|++..+ .+..++..+...|.. .+++++|+..|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 67777776 6777777776665543 244556666666666 666777777777666654 34455555555
Q ss_pred Hhc----cCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-
Q 010405 250 CSH----LGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGR----AGLLEEAENFIASMPMKPDNVIWGTLLGACRV- 320 (511)
Q Consensus 250 ~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~- 320 (511)
+.. .++.++|...|++..+ . .+...+..+...|.. .+++++|.+.|++.-...+...+..+...+..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~-~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACD-L---KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence 655 6777777777776665 2 234555666666666 66677776666655111224555555666665
Q ss_pred ---cCchhHHHHHHHHHhhcCCC
Q 010405 321 ---HRNAEMGQRIGNMLIESDQN 340 (511)
Q Consensus 321 ---~g~~~~a~~~~~~~~~~~p~ 340 (511)
.+++++|...++++.+.+|+
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CCcccCHHHHHHHHHHHHHcCCH
Confidence 66677777777776666664
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.59 E-value=3.9e-14 Score=141.31 Aligned_cols=344 Identities=11% Similarity=-0.010 Sum_probs=237.3
Q ss_pred HHHHHHHhcCChHHHHHHHhcCC-CCChhHHHHHHHHHHHcCCh---HHHHHHHccCCCCChhHHHHHHHHHHhcC----
Q 010405 16 SLIQFYSVCGRVRDARWVFDESD-DLDVVSWNSMINGYVRNGEI---LEGLKLFDKMPQRNDVSWNSILGGLVRFG---- 87 (511)
Q Consensus 16 ~li~~~~~~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~li~~~~~~g---- 87 (511)
.+...+.+.|++++|.++|++.. ..++.++..+...|...|+. ++|++.|++..+.++..+..|..++...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC
Confidence 36677788999999999998755 24666777777788888888 99999999998878788888888666655
Q ss_pred -CHHHHHHHHhhCCCC-ChhHHHHHHHHHHHCCChhH---HHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 010405 88 -SVDDACRVFNQMPKR-SLVSWVVLISGFAQNGRPKE---ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVY 162 (511)
Q Consensus 88 -~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 162 (511)
+.++|...|++..++ +..++..|...|...+...+ +.+.+......| +......+...|...+.++++....
T Consensus 88 ~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a 164 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDV 164 (452)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHH
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHH
Confidence 788999999987654 45678888888888766544 455555554444 4556777888888888655554443
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHhcC---CHHHHHHHHHhcCCC---CeeehHHHHHHHHHc----CChHHHHHHHHHHH
Q 010405 163 SYIQKKCIKLDSILCAALIDMYAKCG---SIDLAMQVFHSYGDK---DVSAYTSAIFGLAMN----GHSIEAFELFENMK 232 (511)
Q Consensus 163 ~~~~~~~~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~----g~~~~A~~~~~~m~ 232 (511)
....+.-...++..+..|..+|.+.| +.++|.+.|++..+. +...+..+...|... ++.++|+.+|++..
T Consensus 165 ~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 165 ERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 33333222334448888999999999 999999999987653 333336677777554 68999999999987
Q ss_pred hCCCCCCHHHHHHHHHH-H--hccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcC-----CHHHHHHHHHhCCC
Q 010405 233 SKGISPDSISYIAVLSA-C--SHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAG-----LLEEAENFIASMPM 304 (511)
Q Consensus 233 ~~g~~p~~~t~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~ 304 (511)
.| +...+..+... + ...++.++|..+|++..+ .| ++..+..|...|. .| ++++|.+.|++.-
T Consensus 245 -~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa- 314 (452)
T 3e4b_A 245 -PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV- 314 (452)
T ss_dssp -GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-
T ss_pred -CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-
Confidence 33 45556666665 3 568999999999999987 44 5677888888887 55 9999999999987
Q ss_pred CCCHHHHHHHHHHHHh----cCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHH----cCCchHHHHHHHHHHhCCCc
Q 010405 305 KPDNVIWGTLLGACRV----HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVE----TLKGENAEEVRKTMRKRKIK 374 (511)
Q Consensus 305 ~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~ 374 (511)
..++..+..|...|.. ..+.++|...++++.+. .++.....|+.+|.. ..+.++|...++...+.|..
T Consensus 315 ~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 315 GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 5577778777777765 34999999999999874 346788899999975 45899999999998887753
No 43
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.59 E-value=6.3e-14 Score=125.20 Aligned_cols=194 Identities=15% Similarity=0.050 Sum_probs=110.0
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 010405 103 SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182 (511)
Q Consensus 103 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 182 (511)
+...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++++++.. |.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 44556666777777777777777777766643 3356666677777777777777777777776664 335566666666
Q ss_pred HHHhc-----------CCHHHHHHHHHhcCC--C-CeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010405 183 MYAKC-----------GSIDLAMQVFHSYGD--K-DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLS 248 (511)
Q Consensus 183 ~y~~~-----------g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 248 (511)
+|.+. |++++|+..|++..+ | +...|..+...|...|++++|+..|++..+.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 66666 666666666655442 2 34455555556666666666666666665544 45555556666
Q ss_pred HHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 010405 249 ACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM 302 (511)
Q Consensus 249 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 302 (511)
++...|++++|+..|+...+. -+.+...+..+..++.+.|++++|.+.+++.
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666666666666551 1223455555666666666666666655543
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.59 E-value=7.1e-14 Score=135.43 Aligned_cols=246 Identities=9% Similarity=0.068 Sum_probs=195.3
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 010405 104 LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA-LDYGNWVYSYIQKKCIKLDSILCAALID 182 (511)
Q Consensus 104 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~ 182 (511)
...|+.+...+.+.|++++|++.|++..+.. +-+..+|..+..++...|+ +++|+..++++++.. +-+..+|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 3578888888889999999999999888753 3367788888888889996 999999999998875 447788888999
Q ss_pred HHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-cCCHHH
Q 010405 183 MYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSH-LGWVEK 258 (511)
Q Consensus 183 ~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~g~~~~ 258 (511)
+|.+.|++++|+..|+++.+ .+..+|..+..++...|++++|+..|+++++.... +...|..+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999988764 46678888888999999999999999999886432 56788888888887 565566
Q ss_pred H-----HHHHHHchhhcCCCC-CHhHHHHHHHHHHHcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC-------
Q 010405 259 G-----FYYFHSMFDVHGIKP-ELDHYACMVDLLGRAG--LLEEAENFIASMPMKP-DNVIWGTLLGACRVHR------- 322 (511)
Q Consensus 259 a-----~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g------- 322 (511)
| +..|++..+ +.| +...|..+..+|.+.| ++++|.+.++++...| +...+..+...+...|
T Consensus 254 A~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 6 477888776 344 4678888888888888 6888988888774445 4567777888877763
Q ss_pred -c-hhHHHHHHHHH-hhcCCCCchhHHHHHHHHHHc
Q 010405 323 -N-AEMGQRIGNML-IESDQNHDGRYILLSNIYVET 355 (511)
Q Consensus 323 -~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 355 (511)
+ .++|+++++++ .+.+|.....|..++..+...
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 2 58999999999 889998888888777666543
No 45
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.58 E-value=2.8e-13 Score=136.00 Aligned_cols=324 Identities=12% Similarity=-0.014 Sum_probs=213.0
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHhcCC-------C----CChhHHHHHHHHHHHc--CChHHHHHHHccCCC--C-Chh
Q 010405 11 VFVKNSLIQFYSVCGRVRDARWVFDESD-------D----LDVVSWNSMINGYVRN--GEILEGLKLFDKMPQ--R-NDV 74 (511)
Q Consensus 11 ~~~~~~li~~~~~~g~~~~A~~~f~~~~-------~----~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~--~-~~~ 74 (511)
..+|+.+...|...|++++|...|++.. . ....++..+..++... +++++|++.|++..+ | ++.
T Consensus 94 ~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~ 173 (472)
T 4g1t_A 94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPE 173 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHH
Confidence 4678899999999999999998887532 1 1345676666666654 468999999999864 4 444
Q ss_pred HHHHHHHH---HHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHH----CCChhHHHHHHHHHHHCCCCCCHhHHHH
Q 010405 75 SWNSILGG---LVRFGSVDDACRVFNQMPK---RSLVSWVVLISGFAQ----NGRPKEALALFREMQSLDLEPNSAILVS 144 (511)
Q Consensus 75 ~~~~li~~---~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 144 (511)
.+..+..+ +...++.++|.+.|++..+ .+..++..+...+.. .|++++|.+.+++..... +.+..++..
T Consensus 174 ~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~ 252 (472)
T 4g1t_A 174 FTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRS 252 (472)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHH
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHH
Confidence 55555544 3456777888888876542 355666666655544 467889999999887764 457788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc-------------------CCHHHHHHHHHhcCC---
Q 010405 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC-------------------GSIDLAMQVFHSYGD--- 202 (511)
Q Consensus 145 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~-------------------g~~~~A~~~~~~~~~--- 202 (511)
+...+...|++++|...++++.+.. |.+..++..+...|... +..+.|...|+...+
T Consensus 253 lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 331 (472)
T 4g1t_A 253 AAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND 331 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC
Confidence 9999999999999999999999874 44677777777776532 235667777776543
Q ss_pred CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHH-HHhccCCHHHHHHHHHHchhhcCCCCCHhHH
Q 010405 203 KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSI--SYIAVLS-ACSHLGWVEKGFYYFHSMFDVHGIKPELDHY 279 (511)
Q Consensus 203 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 279 (511)
.+..+|..+...|...|++++|+..|++.......|... .+..+.. .....|+.++|+..|.+..+ +.|+....
T Consensus 332 ~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~ 408 (472)
T 4g1t_A 332 NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREK 408 (472)
T ss_dssp TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHH
T ss_pred chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHH
Confidence 467789999999999999999999999998865443321 2222322 24578999999999999887 55654332
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHH
Q 010405 280 ACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILL 348 (511)
Q Consensus 280 ~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 348 (511)
... ...+.++++.. ...| +..+|..|...+...|++++|++.|+++++..|.+|.+...+
T Consensus 409 ~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 409 EKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 222 22333444333 2233 567899999999999999999999999999988877665544
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.57 E-value=1e-12 Score=121.77 Aligned_cols=224 Identities=12% Similarity=-0.023 Sum_probs=195.9
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CCeeehHHHH
Q 010405 138 NSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAK----CGSIDLAMQVFHSYGD-KDVSAYTSAI 212 (511)
Q Consensus 138 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li 212 (511)
+..++..+...+...|++++|...+++..+. .+...+..+...|.. .+++++|.+.|++..+ .+..++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6678888999999999999999999999984 356788889999999 9999999999998765 4677888999
Q ss_pred HHHHH----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHchhhcCCCCCHhHHHHHHH
Q 010405 213 FGLAM----NGHSIEAFELFENMKSKGISPDSISYIAVLSACSH----LGWVEKGFYYFHSMFDVHGIKPELDHYACMVD 284 (511)
Q Consensus 213 ~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 284 (511)
..|.. .+++++|+..|++..+.+ +...+..+...|.. .++.++|..+|++..+ .+ +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-LN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh-cC---cHHHHHHHHH
Confidence 99999 999999999999999875 67788888888988 9999999999999987 33 5667888889
Q ss_pred HHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHH--
Q 010405 285 LLGR----AGLLEEAENFIASMPMKPDNVIWGTLLGACRV----HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVE-- 354 (511)
Q Consensus 285 ~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 354 (511)
.|.. .+++++|.+.|++.-...+...+..+...+.. .+++++|...++++.+..| +..+..|+.+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 9988 99999999999887222467788888888988 9999999999999999876 6788999999999
Q ss_pred --cCCchHHHHHHHHHHhCCC
Q 010405 355 --TLKGENAEEVRKTMRKRKI 373 (511)
Q Consensus 355 --~g~~~~A~~~~~~m~~~g~ 373 (511)
.+++++|.+.+++..+.|.
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTC
T ss_pred CcccCHHHHHHHHHHHHHcCC
Confidence 9999999999999887653
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.57 E-value=3.8e-13 Score=122.84 Aligned_cols=206 Identities=11% Similarity=0.053 Sum_probs=115.9
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 010405 104 LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDM 183 (511)
Q Consensus 104 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 183 (511)
...|..+...+...|++++|++.|+++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 3456666666666666666666666665542 2344555555555566666666666665555542 2234444444444
Q ss_pred HHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHH
Q 010405 184 YAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISP-DSISYIAVLSACSHLGWVEKGFYY 262 (511)
Q Consensus 184 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~ 262 (511)
|...|+++ +|+++|+++...+..| +...+..+...+...|++++|...
T Consensus 115 ~~~~g~~~-------------------------------~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 115 LYEQKRYE-------------------------------EAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp HHHTTCHH-------------------------------HHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhHHH-------------------------------HHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44444444 4444444444322223 234455555566666666666666
Q ss_pred HHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCC
Q 010405 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQN 340 (511)
Q Consensus 263 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 340 (511)
++++.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +...+..+...+...|+.++|.+.++++.+..|+
T Consensus 164 ~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 164 FEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 6666552 1223556666666666777777777666665 2223 4455666666667777777777777777777776
Q ss_pred Cchh
Q 010405 341 HDGR 344 (511)
Q Consensus 341 ~~~~ 344 (511)
++..
T Consensus 242 ~~~~ 245 (252)
T 2ho1_A 242 SLEY 245 (252)
T ss_dssp SHHH
T ss_pred CHHH
Confidence 6543
No 48
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.55 E-value=2.2e-13 Score=133.52 Aligned_cols=265 Identities=13% Similarity=0.037 Sum_probs=163.5
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCc-cHH
Q 010405 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEPN----SAILVSLLSACAQLGALDYGNWVYSYIQKK----CIKL-DSI 175 (511)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~ 175 (511)
..+......+...|++++|+..|++..+.+ +.+ ...+..+...+...|++++|...++++.+. +.++ ...
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 344445555555666666666665555432 112 234555555555666666666655554332 1111 133
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----eeehHHHHHHHHHcCC--------------------hHHHHH
Q 010405 176 LCAALIDMYAKCGSIDLAMQVFHSYGD-----KD----VSAYTSAIFGLAMNGH--------------------SIEAFE 226 (511)
Q Consensus 176 ~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~ 226 (511)
++..+...|...|++++|...|++..+ ++ ..++..+...|...|+ +++|+.
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 455556666666666666666554432 11 2245556666666666 666666
Q ss_pred HHHHHHhC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC----HhHHHHHHHHHHHcCCHHHHHH
Q 010405 227 LFENMKSK----GISPD-SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE----LDHYACMVDLLGRAGLLEEAEN 297 (511)
Q Consensus 227 ~~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~ 297 (511)
.+.+.... +..|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 66665431 11111 345667777788888888888888877653211122 3367788888888888888888
Q ss_pred HHHhC----CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC------chhHHHHHHHHHHcCCchHHHH
Q 010405 298 FIASM----PMKPD----NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH------DGRYILLSNIYVETLKGENAEE 363 (511)
Q Consensus 298 ~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~ 363 (511)
.+++. +..++ ..++..+...+...|++++|...++++.+..+.. ..++..++.+|...|++++|.+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88765 11112 4466777778888899999999998888853322 4577788889999999999999
Q ss_pred HHHHHHh
Q 010405 364 VRKTMRK 370 (511)
Q Consensus 364 ~~~~m~~ 370 (511)
.+++..+
T Consensus 329 ~~~~al~ 335 (406)
T 3sf4_A 329 FAEKHLE 335 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887654
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.55 E-value=7.2e-13 Score=118.36 Aligned_cols=206 Identities=10% Similarity=-0.018 Sum_probs=106.0
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 010405 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMY 184 (511)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 184 (511)
..|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~--- 83 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG--- 83 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH---
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH---
Confidence 445555555555555555555555555432 2234444555555555555555555555554432 22333333333
Q ss_pred HhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHc-CChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCHHHHHHH
Q 010405 185 AKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN-GHSIEAFELFENMKSKGISPD-SISYIAVLSACSHLGWVEKGFYY 262 (511)
Q Consensus 185 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~ 262 (511)
..|... |++++|+..++++...+..|+ ...+..+...+...|++++|...
T Consensus 84 ----------------------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 135 (225)
T 2vq2_A 84 ----------------------------WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAY 135 (225)
T ss_dssp ----------------------------HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ----------------------------HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344444 444444444444444212222 34455555556666666666666
Q ss_pred HHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC--CCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCC
Q 010405 263 FHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMK--PDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQ 339 (511)
Q Consensus 263 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 339 (511)
+..+.+. .+.+...+..+...+.+.|++++|.+.++++ ... .+...+..+...+...|+.+.+..+++.+.+..|
T Consensus 136 ~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p 213 (225)
T 2vq2_A 136 LKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP 213 (225)
T ss_dssp HHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 6665541 1223455556666666666666666666554 111 2444455555556666666666666666666666
Q ss_pred CCchhH
Q 010405 340 NHDGRY 345 (511)
Q Consensus 340 ~~~~~~ 345 (511)
+++...
T Consensus 214 ~~~~~~ 219 (225)
T 2vq2_A 214 YSEELQ 219 (225)
T ss_dssp TCHHHH
T ss_pred CCHHHH
Confidence 655443
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.55 E-value=7.3e-14 Score=126.70 Aligned_cols=211 Identities=11% Similarity=0.055 Sum_probs=110.5
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 010405 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMY 184 (511)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 184 (511)
.+|..+...+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...|
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 445555666666666666666666665532 2345555555555555566666655555555542 22334444444444
Q ss_pred HhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010405 185 AKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264 (511)
Q Consensus 185 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 264 (511)
.. .|++++|+..++++.+.. +.+...+..+...+...|++++|...++
T Consensus 102 ~~-------------------------------~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 149 (243)
T 2q7f_A 102 VV-------------------------------KEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQ 149 (243)
T ss_dssp HH-------------------------------TTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HH-------------------------------hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 44 444444444444444332 2234455555566666666666666666
Q ss_pred HchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCc
Q 010405 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMK-PDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD 342 (511)
Q Consensus 265 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 342 (511)
++.+. .+.+...+..+...+.+.|++++|.+.++++ ... .+..+|..+...+...|++++|...++++.+..|+++
T Consensus 150 ~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 227 (243)
T 2q7f_A 150 RAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHM 227 (243)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCH
T ss_pred HHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchH
Confidence 66552 1234556666666677777777777766665 222 2456677777777777888888888888888777776
Q ss_pred hhHHHHHHH
Q 010405 343 GRYILLSNI 351 (511)
Q Consensus 343 ~~~~~l~~~ 351 (511)
..+..+..+
T Consensus 228 ~~~~~~~~l 236 (243)
T 2q7f_A 228 LALHAKKLL 236 (243)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHHHHH
Confidence 666555443
No 51
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.55 E-value=9.4e-14 Score=138.55 Aligned_cols=310 Identities=11% Similarity=0.018 Sum_probs=221.9
Q ss_pred HHHHHHHcCChHHHHHHHccCCC-CChhHHHHHHHHHHhcCCH---HHHHHHHhhCCCCChhHHHHHHHHHHHCC-----
Q 010405 48 MINGYVRNGEILEGLKLFDKMPQ-RNDVSWNSILGGLVRFGSV---DDACRVFNQMPKRSLVSWVVLISGFAQNG----- 118 (511)
Q Consensus 48 li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g----- 118 (511)
+...+.+.|++++|+++|++..+ .+...+..|..+|...|+. ++|...|++..+.++..+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 56677889999999999998865 4566677777888888888 99999999988777778888888666665
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC----CHH
Q 010405 119 RPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALD---YGNWVYSYIQKKCIKLDSILCAALIDMYAKCG----SID 191 (511)
Q Consensus 119 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g----~~~ 191 (511)
++++|+..|++..+.|.. ..+..|...|...+..+ .+.+.+......| +......|...|...+ ..+
T Consensus 89 ~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHH
T ss_pred CHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHH
Confidence 788999999999987632 36777777777665543 3455555555555 3456777888888887 556
Q ss_pred HHHHHHHhcCCCCeeehHHHHHHHHHcC---ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc----CCHHHHHHHHH
Q 010405 192 LAMQVFHSYGDKDVSAYTSAIFGLAMNG---HSIEAFELFENMKSKGISPDSISYIAVLSACSHL----GWVEKGFYYFH 264 (511)
Q Consensus 192 ~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----g~~~~a~~~~~ 264 (511)
.+..+++.....+..++..+...|...| +.++|+..|++..+.| .++...+..+...|... ++.++|..+|+
T Consensus 163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~ 241 (452)
T 3e4b_A 163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLE 241 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 6777777777777779999999999999 9999999999999887 34555556677777655 79999999999
Q ss_pred HchhhcCCCCCHhHHHHHHHH-H--HHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----chhHHHHHHHHHhh
Q 010405 265 SMFDVHGIKPELDHYACMVDL-L--GRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHR-----NAEMGQRIGNMLIE 336 (511)
Q Consensus 265 ~~~~~~~~~p~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g-----~~~~a~~~~~~~~~ 336 (511)
... +-++..+..|..+ | ...+++++|.+.|++.-...+...+..|...|. .| ++++|...|+++.
T Consensus 242 ~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa- 314 (452)
T 3e4b_A 242 KIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV- 314 (452)
T ss_dssp HHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-
T ss_pred HHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-
Confidence 875 3456677777777 4 468999999999998732337777777777776 55 9999999999988
Q ss_pred cCCCCchhHHHHHHHHHH----cCCchHHHHHHHHHHhCCC
Q 010405 337 SDQNHDGRYILLSNIYVE----TLKGENAEEVRKTMRKRKI 373 (511)
Q Consensus 337 ~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~ 373 (511)
|.++..+..|+.+|.. ..++++|.+.+++..+.|.
T Consensus 315 --~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 315 --GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp --TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred --CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 8888999999999987 3499999999999888764
No 52
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.55 E-value=7.4e-13 Score=122.34 Aligned_cols=224 Identities=10% Similarity=-0.042 Sum_probs=161.9
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHccCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCh----hHHHHHHH
Q 010405 42 VVSWNSMINGYVRNGEILEGLKLFDKMPQ---RNDVSWNSILGGLVRFGSVDDACRVFNQMPK--RSL----VSWVVLIS 112 (511)
Q Consensus 42 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~ 112 (511)
...+......+...|++++|+..|++..+ .+...+..+...|...|++++|...|++..+ ++. .+|..+..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 44566778889999999999999999864 3456899999999999999999999998754 222 34899999
Q ss_pred HHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH-HHHHhcCCHH
Q 010405 113 GFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALI-DMYAKCGSID 191 (511)
Q Consensus 113 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~y~~~g~~~ 191 (511)
.|...|++++|++.|++..+.. +.+..++..+...+...|++++|...++++++.. +.+..++..+. ..|. .++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~~~~ 159 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NKEYV 159 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HHHHH
Confidence 9999999999999999998864 3466889999999999999999999999998873 45667777777 5444 45788
Q ss_pred HHHHHHHhcCC--C-CeeehHHHHHHHHHcCC---hHHHHHHHHHHHhCC-CCCCH------HHHHHHHHHHhccCCHHH
Q 010405 192 LAMQVFHSYGD--K-DVSAYTSAIFGLAMNGH---SIEAFELFENMKSKG-ISPDS------ISYIAVLSACSHLGWVEK 258 (511)
Q Consensus 192 ~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~~------~t~~~ll~~~~~~g~~~~ 258 (511)
+|.+.|+++.+ | +...|..+...+...|+ +++|...|++..+.. -.|+. .+|..+...+...|++++
T Consensus 160 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 88777776553 2 34455555566666565 556666666655421 11221 244445555555555555
Q ss_pred HHHHHHHchh
Q 010405 259 GFYYFHSMFD 268 (511)
Q Consensus 259 a~~~~~~~~~ 268 (511)
|...|+++.+
T Consensus 240 A~~~~~~al~ 249 (272)
T 3u4t_A 240 ADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555554
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.55 E-value=1.4e-13 Score=127.27 Aligned_cols=237 Identities=8% Similarity=-0.110 Sum_probs=163.5
Q ss_pred cCCHHHHHHHHhhCCCC-------ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHH
Q 010405 86 FGSVDDACRVFNQMPKR-------SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYG 158 (511)
Q Consensus 86 ~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 158 (511)
.|++++|...|+++.+. +..+|..+...+...|++++|+..|++..+.. +.+..++..+..++...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 46677777777766542 34567777888888888888888888877653 33677778888888888888888
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 010405 159 NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD--KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGI 236 (511)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 236 (511)
...++.+++.. +.+..++..+..+|.+.|++++|.+.|+++.+ |+.......+..+...|++++|+..+++.....
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~- 174 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS- 174 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 88888887764 34567777888888888888888888887654 444334444445566788888888887776642
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC-----HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHH
Q 010405 237 SPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE-----LDHYACMVDLLGRAGLLEEAENFIASM-PMKPDNVI 310 (511)
Q Consensus 237 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~ 310 (511)
+++...+ .++..+...++.++|...+....+ ..|+ ...+..+...|.+.|++++|...|++. ...|+.
T Consensus 175 ~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 248 (275)
T 1xnf_A 175 DKEQWGW-NIVEFYLGNISEQTLMERLKADAT---DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN-- 248 (275)
T ss_dssp CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCC---SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--
T ss_pred CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhc---ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--
Confidence 3343444 366667777888888888887764 2232 567788888899999999999998877 555633
Q ss_pred HHHHHHHHHhcCchhHHHHHH
Q 010405 311 WGTLLGACRVHRNAEMGQRIG 331 (511)
Q Consensus 311 ~~~ll~~~~~~g~~~~a~~~~ 331 (511)
+.....++...|++++|++.+
T Consensus 249 ~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 222344566667777777665
No 54
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.55 E-value=7.1e-14 Score=137.68 Aligned_cols=263 Identities=11% Similarity=-0.036 Sum_probs=165.8
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH----hHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCccHHHH
Q 010405 107 WVVLISGFAQNGRPKEALALFREMQSLDLEPNS----AILVSLLSACAQLGALDYGNWVYSYIQKK----C-IKLDSILC 177 (511)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~ 177 (511)
+..+...+...|++++|+..|++..+.+ +.+. ..+..+...+...|++++|...++++++. + .+....++
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 3344455556666666666666555532 1122 34555555556666666666665555442 1 11223455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC-----C----CeeehHHHHHHHHHcCC-----------------hHHHHHHHHHH
Q 010405 178 AALIDMYAKCGSIDLAMQVFHSYGD-----K----DVSAYTSAIFGLAMNGH-----------------SIEAFELFENM 231 (511)
Q Consensus 178 ~~li~~y~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m 231 (511)
..+...|...|++++|...|++..+ . ...+|..+...|...|+ +++|+..+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 5566666666666666666655432 0 12345556666666666 66666666665
Q ss_pred HhC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC----HhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 010405 232 KSK----GISP-DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE----LDHYACMVDLLGRAGLLEEAENFIASM 302 (511)
Q Consensus 232 ~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~ 302 (511)
... +..| ...++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.+++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 431 1111 1346667777888888888888888887652211112 236778888888999999998888765
Q ss_pred ----CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC------chhHHHHHHHHHHcCCchHHHHHHHHH
Q 010405 303 ----PMKPD----NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH------DGRYILLSNIYVETLKGENAEEVRKTM 368 (511)
Q Consensus 303 ----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m 368 (511)
+...+ ..++..+...+...|++++|...++++.+..+.. ..++..++.+|...|++++|.+.+++.
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 11111 4567777888899999999999999998853322 347888999999999999999999887
Q ss_pred Hh
Q 010405 369 RK 370 (511)
Q Consensus 369 ~~ 370 (511)
.+
T Consensus 370 l~ 371 (411)
T 4a1s_A 370 LQ 371 (411)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 55
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.54 E-value=1.2e-12 Score=119.47 Aligned_cols=194 Identities=12% Similarity=0.007 Sum_probs=154.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 010405 73 DVSWNSILGGLVRFGSVDDACRVFNQMPK---RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSAC 149 (511)
Q Consensus 73 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 149 (511)
...+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 56788899999999999999999998753 467789999999999999999999999998764 44778899999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHH
Q 010405 150 AQLGALDYGNWVYSYIQKKCIKL-DSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAF 225 (511)
Q Consensus 150 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 225 (511)
...|++++|...++.+.+.+..| +...+..+...|.+.|++++|.+.|+++.+ .+...|..+...|...|++++|.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998833333 566788888888889999988888887653 34556777777777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchh
Q 010405 226 ELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD 268 (511)
Q Consensus 226 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 268 (511)
..++++.... +.+...+..+...+...|+.++|.++++.+.+
T Consensus 196 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 196 QYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 7777776642 23455566666677777777777777777765
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.54 E-value=6.4e-13 Score=118.72 Aligned_cols=197 Identities=11% Similarity=-0.051 Sum_probs=159.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010405 173 DSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249 (511)
Q Consensus 173 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 249 (511)
+..++..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|++.|+++.... +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 445566666666666777777666665542 344566777777777888888888888877653 3357788889999
Q ss_pred Hhcc-CCHHHHHHHHHHchhhcCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchh
Q 010405 250 CSHL-GWVEKGFYYFHSMFDVHGIKPE-LDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAE 325 (511)
Q Consensus 250 ~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~ 325 (511)
+... |++++|...++.+.+ .+..|+ ...+..+...+...|++++|.+.++++ ...| +...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 9999 999999999999987 434444 678889999999999999999999887 3334 5778888999999999999
Q ss_pred HHHHHHHHHhhcCC-CCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010405 326 MGQRIGNMLIESDQ-NHDGRYILLSNIYVETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 326 ~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 371 (511)
+|...++++.+..| .++..+..+...+...|+.++|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 99999999999999 88899999999999999999999999988754
No 57
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.54 E-value=2.4e-13 Score=131.72 Aligned_cols=227 Identities=8% Similarity=0.040 Sum_probs=193.7
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC-HHHHHHHHHhcCC---CCeeehHHHHHH
Q 010405 139 SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS-IDLAMQVFHSYGD---KDVSAYTSAIFG 214 (511)
Q Consensus 139 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~ 214 (511)
...|..+..++...|++++|+..++++++.. +.+..+|+.+..+|.+.|+ +++|++.|+++.. .+...|+.+...
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4567888888999999999999999999985 5578899999999999997 9999999998875 467789999999
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHH-cCCHH
Q 010405 215 LAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGR-AGLLE 293 (511)
Q Consensus 215 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~ 293 (511)
+...|++++|+..|+++++.... +...|..+..++...|++++|+..|+++.+. -+-+...|+.+..+|.+ .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999986432 6788999999999999999999999999982 23357889999999999 66657
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--chhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcC--------
Q 010405 294 EA-----ENFIASM-PMKP-DNVIWGTLLGACRVHR--NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETL-------- 356 (511)
Q Consensus 294 ~A-----~~~~~~~-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 356 (511)
+| ++.|++. ...| +...|..+...+...| ++++|++.++++ +..|+++..+..|+.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 4667665 4455 5678988888888888 689999999998 889999999999999999875
Q ss_pred -CchHHHHHHHHH-Hh
Q 010405 357 -KGENAEEVRKTM-RK 370 (511)
Q Consensus 357 -~~~~A~~~~~~m-~~ 370 (511)
..++|.++++++ .+
T Consensus 332 ~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 332 DILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 258999999988 54
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.54 E-value=2.4e-13 Score=129.30 Aligned_cols=264 Identities=13% Similarity=0.025 Sum_probs=169.5
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-ccHHHH
Q 010405 107 WVVLISGFAQNGRPKEALALFREMQSLDLEPN----SAILVSLLSACAQLGALDYGNWVYSYIQKK----CIK-LDSILC 177 (511)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~ 177 (511)
+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|...++++.+. +.+ ....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3344455556666666666666655532 112 234555555666666666666665554432 111 123455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC-----CC----eeehHHHHHHHHHcCC--------------------hHHHHHHH
Q 010405 178 AALIDMYAKCGSIDLAMQVFHSYGD-----KD----VSAYTSAIFGLAMNGH--------------------SIEAFELF 228 (511)
Q Consensus 178 ~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~ 228 (511)
..+...|...|++++|...|++..+ ++ ..++..+...|...|+ +++|+..+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 5566666666666666666655432 11 2255566666666666 66777766
Q ss_pred HHHHhC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC----HhHHHHHHHHHHHcCCHHHHHHHH
Q 010405 229 ENMKSK----GISP-DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE----LDHYACMVDLLGRAGLLEEAENFI 299 (511)
Q Consensus 229 ~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~ 299 (511)
++.... +..| ...++..+...+...|++++|...+++..+...-.++ ...+..+...+...|++++|.+.+
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 665431 1111 1346677777888889999999988887652211111 346788888999999999999988
Q ss_pred HhC----CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC------chhHHHHHHHHHHcCCchHHHHHH
Q 010405 300 ASM----PMKPD----NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH------DGRYILLSNIYVETLKGENAEEVR 365 (511)
Q Consensus 300 ~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~ 365 (511)
++. +..++ ..++..+...+...|++++|...++++.+..|.. ..++..++.+|.+.|++++|.+.+
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 326 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 775 11122 4467777788999999999999999998854322 347788999999999999999999
Q ss_pred HHHHhC
Q 010405 366 KTMRKR 371 (511)
Q Consensus 366 ~~m~~~ 371 (511)
++..+.
T Consensus 327 ~~a~~~ 332 (338)
T 3ro2_A 327 EKHLEI 332 (338)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 988763
No 59
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.52 E-value=2.2e-13 Score=123.44 Aligned_cols=197 Identities=11% Similarity=0.035 Sum_probs=149.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010405 173 DSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249 (511)
Q Consensus 173 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 249 (511)
....+..+...+...|++++|...|+++.+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 345566667777777777777777776643 345667777778888888888888888887653 2367788888999
Q ss_pred HhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHH
Q 010405 250 CSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMG 327 (511)
Q Consensus 250 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 327 (511)
+...|++++|...++++.+. .+.+...+..+...+.+.|++++|.+.++++ ...| +...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999873 2446778999999999999999999999887 3333 677888899999999999999
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 328 QRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 328 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
...++++.+..|.++.++..++.+|...|++++|.+.+++..+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999987643
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.51 E-value=1.2e-13 Score=135.57 Aligned_cols=153 Identities=13% Similarity=-0.003 Sum_probs=104.2
Q ss_pred ehHHHHHHHHHcCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC----Hh
Q 010405 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGI-SPD----SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE----LD 277 (511)
Q Consensus 207 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 277 (511)
+|..+...|...|++++|+..+++...... .++ ..++..+...+...|++++|...+++..+...-.++ ..
T Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 268 (406)
T 3sf4_A 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 268 (406)
T ss_dssp HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHH
Confidence 455556666666666666666666543210 111 236677777788888888888888877652211111 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHhhcC------CCCch
Q 010405 278 HYACMVDLLGRAGLLEEAENFIASM----PMKPD----NVIWGTLLGACRVHRNAEMGQRIGNMLIESD------QNHDG 343 (511)
Q Consensus 278 ~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~ 343 (511)
++..+...|...|++++|.+.+++. +..++ ..++..+...+...|++++|...++++.++. +....
T Consensus 269 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 348 (406)
T 3sf4_A 269 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELT 348 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhH
Confidence 6778888899999999998888775 11122 4567778888999999999999999998852 22345
Q ss_pred hHHHHHHHHHHcCCch
Q 010405 344 RYILLSNIYVETLKGE 359 (511)
Q Consensus 344 ~~~~l~~~~~~~g~~~ 359 (511)
++..++.+|...|+..
T Consensus 349 ~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 349 ARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhhHhH
Confidence 6778888888888764
No 61
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.48 E-value=2.6e-13 Score=127.85 Aligned_cols=243 Identities=14% Similarity=0.070 Sum_probs=141.8
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHC-------CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC
Q 010405 104 LVSWVVLISGFAQNGRPKEALALFREMQSL-------DLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKK------CI 170 (511)
Q Consensus 104 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~ 170 (511)
..+|..+...+...|++++|+.+|+++.+. ..+....++..+...+...|++++|...++++++. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 357888888889999999999988888762 22334566777888888888888888888887764 21
Q ss_pred -CccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010405 171 -KLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249 (511)
Q Consensus 171 -~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 249 (511)
+....++..+...|...|++++|.+.|+++. +++..............+..+...
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~------------------------~~~~~~~~~~~~~~~~~~~~la~~ 162 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL------------------------EIREKVLGKDHPDVAKQLNNLALL 162 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH------------------------HHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH------------------------HHHHHhcCCCChHHHHHHHHHHHH
Confidence 2235567778888888888888887776432 222222111111122344455555
Q ss_pred HhccCCHHHHHHHHHHchhhc-----CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhCC----------CCCC------
Q 010405 250 CSHLGWVEKGFYYFHSMFDVH-----GIKP-ELDHYACMVDLLGRAGLLEEAENFIASMP----------MKPD------ 307 (511)
Q Consensus 250 ~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~----------~~p~------ 307 (511)
+...|++++|..+++.+.+.. +..| ....+..+...|.+.|++++|.+.++++- ..+.
T Consensus 163 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 242 (311)
T 3nf1_A 163 CQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM 242 (311)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH
Confidence 556666666666665554420 1112 23445556666666666666666655441 1111
Q ss_pred -HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 308 -NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 308 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
...+..+...+...+.+.++...++......|..+.++..++.+|.+.|++++|.+.+++..+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 243 HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 112222233345556667777777777777777778888888888889999999888887654
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.46 E-value=4.8e-13 Score=134.26 Aligned_cols=208 Identities=6% Similarity=-0.107 Sum_probs=164.9
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH-HHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHH
Q 010405 155 LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSI-DLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFEN 230 (511)
Q Consensus 155 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 230 (511)
++++.+.++...+.. +.+...+..+...|...|++ ++|++.|++..+ .+..+|..+...|...|++++|+..|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344455555444332 34566677777777777777 777777776543 3456777778888888888888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHhcc---------CCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHc--------CCHH
Q 010405 231 MKSKGISPDSISYIAVLSACSHL---------GWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRA--------GLLE 293 (511)
Q Consensus 231 m~~~g~~p~~~t~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~~~ 293 (511)
..+. .|+...+..+...+... |++++|...|++..+. .+.+...|..+..+|... |+++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 8775 46778888888888888 9999999999999872 233477888999999988 9999
Q ss_pred HHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 010405 294 EAENFIASM-PMKP----DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKT 367 (511)
Q Consensus 294 ~A~~~~~~~-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 367 (511)
+|.+.|++. ...| +...|..+..++...|++++|...++++.+++|+++.++..+..++...|++++|.+.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999887 4445 7788999999999999999999999999999999999999999999999999999876543
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.46 E-value=5.4e-13 Score=131.34 Aligned_cols=234 Identities=11% Similarity=-0.014 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHC----CC-CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCccHH
Q 010405 106 SWVVLISGFAQNGRPKEALALFREMQSL----DL-EPNSAILVSLLSACAQLGALDYGNWVYSYIQKK----C-IKLDSI 175 (511)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~ 175 (511)
.|..+...|...|++++|+..|++..+. +- +....++..+...+...|++++|...++++.+. + .+....
T Consensus 88 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 167 (411)
T 4a1s_A 88 IYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGR 167 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 3444444444444554444444443321 00 112233444444455555555555555444332 1 011233
Q ss_pred HHHHHHHHHHhcCC-----------------HHHHHHHHHhcCC-----C----CeeehHHHHHHHHHcCChHHHHHHHH
Q 010405 176 LCAALIDMYAKCGS-----------------IDLAMQVFHSYGD-----K----DVSAYTSAIFGLAMNGHSIEAFELFE 229 (511)
Q Consensus 176 ~~~~li~~y~~~g~-----------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~ 229 (511)
++..+...|...|+ +++|.+.|++..+ . ...+|..+...|...|++++|+..|+
T Consensus 168 ~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 247 (411)
T 4a1s_A 168 ALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQ 247 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 45555555555555 5555555544322 1 12345566666677777777777776
Q ss_pred HHHhCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCC----CHhHHHHHHHHHHHcCCHHHHHHHHH
Q 010405 230 NMKSKGI-SPD----SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP----ELDHYACMVDLLGRAGLLEEAENFIA 300 (511)
Q Consensus 230 ~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~ 300 (511)
+..+... .++ ..++..+...+...|++++|...+++..+...-.. ....+..+...|...|++++|.+.++
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (411)
T 4a1s_A 248 ERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHN 327 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6654210 011 23677778888888999999888887765221111 14667888889999999999999888
Q ss_pred hC-CC---CCC----HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCC
Q 010405 301 SM-PM---KPD----NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQ 339 (511)
Q Consensus 301 ~~-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 339 (511)
+. .. .++ ..++..+...+...|++++|...++++.++.+
T Consensus 328 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 328 RHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 76 11 112 34677788889999999999999999998765
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.45 E-value=2.5e-11 Score=114.53 Aligned_cols=218 Identities=10% Similarity=0.053 Sum_probs=149.6
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 010405 121 KEALALFREMQSLDLEPNSAILVSLLSACA-------QLGAL-------DYGNWVYSYIQKKCIKLDSILCAALIDMYAK 186 (511)
Q Consensus 121 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 186 (511)
++|+.+|++..... +-+...|..++..+. ..|++ ++|..++++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777776642 335666666666654 34665 7788888888773123456677788888888
Q ss_pred cCCHHHHHHHHHhcCC--C-Cee-ehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-hccCCHHHHHH
Q 010405 187 CGSIDLAMQVFHSYGD--K-DVS-AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC-SHLGWVEKGFY 261 (511)
Q Consensus 187 ~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~g~~~~a~~ 261 (511)
.|++++|.++|++..+ | +.. .|..++..+.+.|+.++|..+|++..+... ++...|....... ...|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888887654 3 232 677777777788888888888888776532 2334443333222 23688888888
Q ss_pred HHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCchhHHHHHHHHHh
Q 010405 262 YFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-P---MKP--DNVIWGTLLGACRVHRNAEMGQRIGNMLI 335 (511)
Q Consensus 262 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 335 (511)
+|+...+.. +.+...|..++..+.+.|++++|..+|++. . ..| ....|..++......|+.+.|..+++++.
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888887632 234677778888888888888888888776 2 244 35577777777788888888888888888
Q ss_pred hcCCCCc
Q 010405 336 ESDQNHD 342 (511)
Q Consensus 336 ~~~p~~~ 342 (511)
+..|+++
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 8877654
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.45 E-value=5.8e-12 Score=109.02 Aligned_cols=165 Identities=7% Similarity=-0.031 Sum_probs=121.2
Q ss_pred eeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHH
Q 010405 205 VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVD 284 (511)
Q Consensus 205 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 284 (511)
...|..+...|...|++++|++.|++..+... -+..++..+..++...|++++|...+...... .+.+...+..+..
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 34466666666666666677777776665421 24566777777777788888888877777652 2334566677777
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHH
Q 010405 285 LLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAE 362 (511)
Q Consensus 285 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 362 (511)
.+...+++++|.+.+++. ...| +...+..+...+...|++++|++.++++++.+|.++.++..++.+|.+.|++++|.
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 778888888888877765 2333 56677777888888888899999998888888888888888899999999999999
Q ss_pred HHHHHHHhCC
Q 010405 363 EVRKTMRKRK 372 (511)
Q Consensus 363 ~~~~~m~~~g 372 (511)
+.+++..+..
T Consensus 162 ~~~~~al~~~ 171 (184)
T 3vtx_A 162 KYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhCC
Confidence 8888877643
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.43 E-value=1.3e-12 Score=124.22 Aligned_cols=98 Identities=13% Similarity=0.064 Sum_probs=59.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC----HhHHHHHHHHHHHcCCHHHHHHHHHhC-C---CCCC----HH
Q 010405 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE----LDHYACMVDLLGRAGLLEEAENFIASM-P---MKPD----NV 309 (511)
Q Consensus 242 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p~----~~ 309 (511)
++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|...+++. . ..++ ..
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 304 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 4555566666666666666666665542111111 445666777777777777777777654 1 0111 33
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHhhcCC
Q 010405 310 IWGTLLGACRVHRNAEMGQRIGNMLIESDQ 339 (511)
Q Consensus 310 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 339 (511)
++..+...+...|++++|...++++.++.+
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 305 ACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 566677777888888888888888877654
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.42 E-value=3.6e-12 Score=124.35 Aligned_cols=163 Identities=10% Similarity=-0.026 Sum_probs=89.3
Q ss_pred ehHHHHHHHHHcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHchhhc---CC-CCCHh
Q 010405 207 AYTSAIFGLAMNGHSIEAFELFENMKSK----GISP-DSISYIAVLSACSHLGWVEKGFYYFHSMFDVH---GI-KPELD 277 (511)
Q Consensus 207 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~-~p~~~ 277 (511)
+++.+...|...|++++|+..|++..+. +-.+ ...++..+...|...|++++|...+++..+.. +. +....
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 3444445555555555555555554321 1000 11355556666666677777766666655411 22 22245
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-C---C--CCC-HHHHHHHHHHHHhcCc---hhHHHHHHHHHhhcCCCCchhHHH
Q 010405 278 HYACMVDLLGRAGLLEEAENFIASM-P---M--KPD-NVIWGTLLGACRVHRN---AEMGQRIGNMLIESDQNHDGRYIL 347 (511)
Q Consensus 278 ~~~~li~~~~~~g~~~~A~~~~~~~-~---~--~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~ 347 (511)
++..+...|.+.|++++|.+.+++. . . .|. ...+..+...+...|+ .++|..++++. ...|.....+..
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~ 344 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHH
Confidence 5666667777777777777666654 1 0 111 1223444455666666 55666665554 223333456667
Q ss_pred HHHHHHHcCCchHHHHHHHHHHh
Q 010405 348 LSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 348 l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
++..|...|++++|.+.+++..+
T Consensus 345 la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777788888888777776644
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.42 E-value=3.5e-12 Score=124.47 Aligned_cols=228 Identities=9% Similarity=-0.030 Sum_probs=161.7
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHC----CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C----CccHHHHH
Q 010405 110 LISGFAQNGRPKEALALFREMQSL----DLEP-NSAILVSLLSACAQLGALDYGNWVYSYIQKKC--I----KLDSILCA 178 (511)
Q Consensus 110 li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~ 178 (511)
....+...|++++|+..|++..+. +-.+ ...++..+..++...|+++.|...+.+..+.. . +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455666777777777777777653 1111 23566677777777777777777777766531 1 11234677
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-----CC----eeehHHHHHHHHHcCChHHHHHHHHHHHhC----CC-CCCHHHHH
Q 010405 179 ALIDMYAKCGSIDLAMQVFHSYGD-----KD----VSAYTSAIFGLAMNGHSIEAFELFENMKSK----GI-SPDSISYI 244 (511)
Q Consensus 179 ~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~t~~ 244 (511)
.+...|...|++++|.+.|++..+ ++ ..++..+...|...|++++|+..|++.... +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 777888888888888887776543 11 136777888888888888888888887652 23 22356788
Q ss_pred HHHHHHhccCCHHHHHHHHHHchhhcC---CCCCHhHHHHHHHHHHHcCC---HHHHHHHHHhCCCCCCHH-HHHHHHHH
Q 010405 245 AVLSACSHLGWVEKGFYYFHSMFDVHG---IKPELDHYACMVDLLGRAGL---LEEAENFIASMPMKPDNV-IWGTLLGA 317 (511)
Q Consensus 245 ~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~~~-~~~~ll~~ 317 (511)
.+...+...|++++|...+++..+... -+.....+..+...|...|+ +++|..++++.+..|+.. .+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 888899999999999999988876321 11223345678888888998 899999999986555433 56677788
Q ss_pred HHhcCchhHHHHHHHHHhhc
Q 010405 318 CRVHRNAEMGQRIGNMLIES 337 (511)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~ 337 (511)
+...|++++|...++++.+.
T Consensus 349 y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999884
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.38 E-value=5.8e-11 Score=112.04 Aligned_cols=210 Identities=13% Similarity=0.110 Sum_probs=139.1
Q ss_pred HHHHHHHhhCCC---CChhHHHHHHHHHH-------HCCCh-------hHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHh
Q 010405 90 DDACRVFNQMPK---RSLVSWVVLISGFA-------QNGRP-------KEALALFREMQSLDLEP-NSAILVSLLSACAQ 151 (511)
Q Consensus 90 ~~A~~~~~~~~~---~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~ 151 (511)
++|..+|++... .++..|..++..+. +.|++ ++|..+|++..+. +.| +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHh
Confidence 455566665543 34556666665554 34665 7777777777663 133 44567777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCccHH-HHHHHHHHHHhcCCHHHHHHHHHhcCCCCee---ehHHHHHHHH-HcCChHHHHH
Q 010405 152 LGALDYGNWVYSYIQKKCIKLDSI-LCAALIDMYAKCGSIDLAMQVFHSYGDKDVS---AYTSAIFGLA-MNGHSIEAFE 226 (511)
Q Consensus 152 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~-~~g~~~~A~~ 226 (511)
.|++++|..+|+++++.. +.+.. +|..++..+.+.|++++|+++|++..+.+.. .|........ ..|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 777777777777777642 22233 6777777777778888888888776652222 2322222211 2588888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCC--CHhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 010405 227 LFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP--ELDHYACMVDLLGRAGLLEEAENFIASM 302 (511)
Q Consensus 227 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~ 302 (511)
+|++..+.. +-+...+..++..+...|+.++|..+|++..+...++| ....|..++..+.+.|++++|..+++++
T Consensus 191 ~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 191 IFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888877642 22566777778888888888888888888887223455 3567788888888888888888888776
No 70
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.38 E-value=3.4e-10 Score=109.70 Aligned_cols=263 Identities=12% Similarity=-0.023 Sum_probs=173.6
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHh----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-Ccc----HHHHH
Q 010405 108 VVLISGFAQNGRPKEALALFREMQSLDLEPNSA----ILVSLLSACAQLGALDYGNWVYSYIQKKCI-KLD----SILCA 178 (511)
Q Consensus 108 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~ 178 (511)
..+...+...|++++|...+++........+.. ++..+...+...|++++|...+++..+... ..+ ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344455667788888888777766643222221 445556667777888888877777665311 011 23355
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-------C----CeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCC--C--CHHHH
Q 010405 179 ALIDMYAKCGSIDLAMQVFHSYGD-------K----DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGIS--P--DSISY 243 (511)
Q Consensus 179 ~li~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~ 243 (511)
.+...|...|++++|...+++... + ...++..+...+...|++++|...+++....... | ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 677777888888888877776542 1 1124556677778888888888888887653221 1 13456
Q ss_pred HHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHH-----HHHHHHHHcCCHHHHHHHHHhC-CCCCC-----HHHHH
Q 010405 244 IAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA-----CMVDLLGRAGLLEEAENFIASM-PMKPD-----NVIWG 312 (511)
Q Consensus 244 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~ 312 (511)
..+...+...|++++|...++.......-......+. ..+..+...|++++|...+++. ...|. ...+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 6777788889999999999988875322111111111 2334577899999999999887 22221 23456
Q ss_pred HHHHHHHhcCchhHHHHHHHHHhhcCCC-----C-chhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 313 TLLGACRVHRNAEMGQRIGNMLIESDQN-----H-DGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 313 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
.+...+...|++++|...++++....+. + ..++..++.+|...|+.++|...+++...
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6777888999999999999998874321 1 23667788899999999999999987764
No 71
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.35 E-value=7.8e-11 Score=101.81 Aligned_cols=161 Identities=13% Similarity=0.050 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 010405 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMY 184 (511)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 184 (511)
..|..+...|.+.|++++|++.|++..+.. +-+..++..+..++...|++++|...+..+.... +.+...+..+...+
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHH
Confidence 344445555555555555555555444432 1234444444444455555555555444444432 22333444444444
Q ss_pred HhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010405 185 AKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261 (511)
Q Consensus 185 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 261 (511)
...++++.|.+.+.+... .+..+|..+...|.+.|++++|++.|++..+.. +.+..++..+..++...|++++|..
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHH
Confidence 444444444444443321 223334444444444444444444444444321 1123344444444444444444444
Q ss_pred HHHHchh
Q 010405 262 YFHSMFD 268 (511)
Q Consensus 262 ~~~~~~~ 268 (511)
.|++..+
T Consensus 163 ~~~~al~ 169 (184)
T 3vtx_A 163 YFKKALE 169 (184)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 4444443
No 72
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.34 E-value=2e-11 Score=127.64 Aligned_cols=160 Identities=13% Similarity=0.091 Sum_probs=119.0
Q ss_pred eehHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC-HhHHHHHH
Q 010405 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGISP-DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE-LDHYACMV 283 (511)
Q Consensus 206 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li 283 (511)
.+|+.+...|.+.|++++|++.|++.++. .| +..++..+..++.+.|++++|+..|++..+ +.|+ ...|..+.
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nLg 84 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence 34555566666666666666666666653 33 356677777777777777777777777776 2343 66777788
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHH
Q 010405 284 DLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA 361 (511)
Q Consensus 284 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 361 (511)
.+|.+.|++++|++.|++. .+.| +...|..+..++...|++++|+..++++++++|+++.++..|+.+|...|+|++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 8888888888888888776 4445 4667888888888888899999999999988898888888899999999999988
Q ss_pred HHHHHHHHh
Q 010405 362 EEVRKTMRK 370 (511)
Q Consensus 362 ~~~~~~m~~ 370 (511)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888876643
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.33 E-value=1.3e-11 Score=116.14 Aligned_cols=242 Identities=10% Similarity=0.039 Sum_probs=135.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC--------C---ChhHHHHHHHHHHHCCChhHHHHHHHHHHHC------CC-
Q 010405 74 VSWNSILGGLVRFGSVDDACRVFNQMPK--------R---SLVSWVVLISGFAQNGRPKEALALFREMQSL------DL- 135 (511)
Q Consensus 74 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~- 135 (511)
.++..+...|...|++++|..+|+++.+ . ...++..+...|...|++++|+..|++.... +-
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3445555555555565555555555432 1 2346777888888888888888888777653 11
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC-CccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeeh
Q 010405 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKK------CI-KLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAY 208 (511)
Q Consensus 136 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~ 208 (511)
+....++..+...+...|++++|...++++.+. +. +....++..+...|...|++++|.+.|+++.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~------- 180 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL------- 180 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------
Confidence 224567788888888999999999988888764 22 2234567777888888888888877776432
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHchhhc------CCCCC------
Q 010405 209 TSAIFGLAMNGHSIEAFELFENMKSKGISP-DSISYIAVLSACSHLGWVEKGFYYFHSMFDVH------GIKPE------ 275 (511)
Q Consensus 209 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~p~------ 275 (511)
+++..... +..| ...++..+...+...|++++|..+++++.+.. ...+.
T Consensus 181 -----------------~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 242 (311)
T 3nf1_A 181 -----------------EIYQTKLG-PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM 242 (311)
T ss_dssp -----------------HHHHHTSC-TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH
T ss_pred -----------------HHHHHHhC-CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH
Confidence 22211100 0011 12234444555555555555555555554310 11111
Q ss_pred -HhHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCC
Q 010405 276 -LDHYACMVDLLGRAGLLEEAENFIASMP-MKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQN 340 (511)
Q Consensus 276 -~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 340 (511)
...+..+...+...+.+.+|...++... ..| +..+|..+...+...|++++|...+++++++.|.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 243 HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1112222233334445555555555552 233 3457778888899999999999999998887664
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.33 E-value=3.8e-10 Score=109.70 Aligned_cols=226 Identities=8% Similarity=-0.002 Sum_probs=122.0
Q ss_pred HHHHHHHCCChhHHHHHHHHHHHCCC-CCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C---Cc-cHHHHH
Q 010405 110 LISGFAQNGRPKEALALFREMQSLDL-EPN----SAILVSLLSACAQLGALDYGNWVYSYIQKKC--I---KL-DSILCA 178 (511)
Q Consensus 110 li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~---~~-~~~~~~ 178 (511)
....+...|++++|+..|++..+... .++ ..++..+..++...|+++.|...+.++.+.. . .+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34445556666666666665543210 011 2345555666666666666666665555421 0 11 134555
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-----CC----eeehHHHHHHHHHcCChHHHHHHHHHHHh-----CCCCCCHHHHH
Q 010405 179 ALIDMYAKCGSIDLAMQVFHSYGD-----KD----VSAYTSAIFGLAMNGHSIEAFELFENMKS-----KGISPDSISYI 244 (511)
Q Consensus 179 ~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~ 244 (511)
.+...|...|++++|.+.|++..+ ++ ..+++.+...|...|++++|+..|++... .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 666666666666666666664432 11 12455556666666666666666666554 22 11245666
Q ss_pred HHHHHHhccCCHHHHHHHHHHchhhcCCC--C-CHhHHHHHHHHHHHcCC---HHHHHHHHHhCCCCCCHH-HHHHHHHH
Q 010405 245 AVLSACSHLGWVEKGFYYFHSMFDVHGIK--P-ELDHYACMVDLLGRAGL---LEEAENFIASMPMKPDNV-IWGTLLGA 317 (511)
Q Consensus 245 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--p-~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~~~-~~~~ll~~ 317 (511)
.+...+...|+.++|...+++..+...-. | ....+..+...|...|+ +.+|...+++.+..|+.. .+..+...
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 66777777777777777777766532211 1 12334455555555566 666666666654333222 33444455
Q ss_pred HHhcCchhHHHHHHHHHhh
Q 010405 318 CRVHRNAEMGQRIGNMLIE 336 (511)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~ 336 (511)
+...|++++|...++++.+
T Consensus 346 y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 5666666666666665554
No 75
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.32 E-value=2e-11 Score=122.53 Aligned_cols=189 Identities=12% Similarity=-0.057 Sum_probs=98.7
Q ss_pred CHhHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCeeehHHHHHH
Q 010405 138 NSAILVSLLSACAQLGAL-DYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD--KDVSAYTSAIFG 214 (511)
Q Consensus 138 ~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~ 214 (511)
+...+..+..++...|++ ++|...++++++.. +.+...+..+..+|.+.|++++|.+.|++..+ |+..+|..+...
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~ 179 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMV 179 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 444444444555555555 55555555554442 22344455555555555555555555554432 333444444444
Q ss_pred HHHc---------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc--------CCHHHHHHHHHHchhhcCCCC---
Q 010405 215 LAMN---------GHSIEAFELFENMKSKGISPDSISYIAVLSACSHL--------GWVEKGFYYFHSMFDVHGIKP--- 274 (511)
Q Consensus 215 ~~~~---------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~p--- 274 (511)
|... |++++|+..|++..+.. +-+...+..+..++... |++++|...|++..+. .|
T Consensus 180 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~ 255 (474)
T 4abn_A 180 LRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV---DRKAS 255 (474)
T ss_dssp HTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH---CGGGG
T ss_pred HHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh---CCCcc
Confidence 5554 55556666666555532 11344555555555555 6666666666666551 23
Q ss_pred -CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHH
Q 010405 275 -ELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIG 331 (511)
Q Consensus 275 -~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 331 (511)
+...|..+..+|.+.|++++|.+.|++. ...| +...+..+...+...|++++|...+
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666666666666666666654 2233 3445555555565556555555443
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.32 E-value=6.6e-11 Score=115.12 Aligned_cols=299 Identities=11% Similarity=-0.049 Sum_probs=200.1
Q ss_pred CChhHHHHHHHHH--HhcCCHHHHHHHHhhCCC------C--ChhHHHHHHHHH--HHCCChhHHH---------HHHHH
Q 010405 71 RNDVSWNSILGGL--VRFGSVDDACRVFNQMPK------R--SLVSWVVLISGF--AQNGRPKEAL---------ALFRE 129 (511)
Q Consensus 71 ~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~------~--~~~~~~~li~~~--~~~g~~~~A~---------~~~~~ 129 (511)
|+..+-+.|-.-| .+.+++++|..+++++.+ . ++..|..++..- .-.+....+. +.++.
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET 87 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence 3344444455555 667777777777765421 1 233344443321 1112222222 55555
Q ss_pred HHHCCCCCCH----hHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CC---ccHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 010405 130 MQSLDLEPNS----AILVSLLSACAQLGALDYGNWVYSYIQKKC--IK---LDSILCAALIDMYAKCGSIDLAMQVFHSY 200 (511)
Q Consensus 130 m~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 200 (511)
+.....+.+. ..+......+...|++++|...++++.+.. .+ ....++..+...|...|+++.|...+++.
T Consensus 88 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a 167 (378)
T 3q15_A 88 IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA 167 (378)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 5432111111 123344556788999999999999998642 11 12457888999999999999999888876
Q ss_pred CC-----CC-----eeehHHHHHHHHHcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHH
Q 010405 201 GD-----KD-----VSAYTSAIFGLAMNGHSIEAFELFENMKSK----GISP-DSISYIAVLSACSHLGWVEKGFYYFHS 265 (511)
Q Consensus 201 ~~-----~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~ 265 (511)
.+ ++ ..+++.+...|...|++++|++.|++..+. +..+ ...++..+...+...|++++|...|.+
T Consensus 168 l~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~ 247 (378)
T 3q15_A 168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQK 247 (378)
T ss_dssp HHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 43 12 346788999999999999999999988652 1111 134677888899999999999999998
Q ss_pred chhhc---CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCc---hhHHHHHHH
Q 010405 266 MFDVH---GIKPELDHYACMVDLLGRAGLLEEAENFIASM----PM--KPD-NVIWGTLLGACRVHRN---AEMGQRIGN 332 (511)
Q Consensus 266 ~~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~ 332 (511)
..+.. +.+....++..+...|.+.|++++|...+++. +. .|. ...+..+...+...++ .++|+..++
T Consensus 248 al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~ 327 (378)
T 3q15_A 248 AAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFE 327 (378)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 87621 22333677889999999999999999999876 21 232 2345555555777787 777777777
Q ss_pred HHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 333 MLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 333 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
+. ...|.....+..++..|...|++++|.+.+++..+
T Consensus 328 ~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 328 KK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 62 23333456778999999999999999999987754
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.30 E-value=1e-10 Score=100.61 Aligned_cols=129 Identities=9% Similarity=-0.081 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 010405 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PM-KPDNVIWGTLLGA 317 (511)
Q Consensus 240 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~ 317 (511)
...+..+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.++++ .. ..+...+..+...
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 119 (186)
T 3as5_A 42 VDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVA 119 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHH
Confidence 334444444455555555555555555441 1223445555555556666666666655554 11 1245566666666
Q ss_pred HHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 318 CRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
+...|++++|...++++.+..|.++.++..++.+|...|++++|.+.+++..+
T Consensus 120 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 120 LDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777776654
No 78
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.27 E-value=2.7e-09 Score=110.28 Aligned_cols=362 Identities=8% Similarity=0.014 Sum_probs=196.1
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCC---hHHHHHHHccCCC-----CChhHH
Q 010405 8 AYDVFVKNSLIQFYSVCGRVRDARWVFDESD---DLDVVSWNSMINGYVRNGE---ILEGLKLFDKMPQ-----RNDVSW 76 (511)
Q Consensus 8 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~-----~~~~~~ 76 (511)
+.|..+|..++..+.+.+.++.|+.+|+++. +.....|..-+..-.+.|+ ++.+.++|++... |++..|
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 3477889999999999999999999999766 4566778888888888888 9999999998864 677777
Q ss_pred HHHHHHHHhcCCH--------HHHHHHHhhCC------CC-ChhHHHHHHHHHH---------HCCChhHHHHHHHHHHH
Q 010405 77 NSILGGLVRFGSV--------DDACRVFNQMP------KR-SLVSWVVLISGFA---------QNGRPKEALALFREMQS 132 (511)
Q Consensus 77 ~~li~~~~~~g~~--------~~A~~~~~~~~------~~-~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~ 132 (511)
..-+.-..+.++. +...++|+... .+ +...|...+.... .+++.+.+..+|++.+.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 7766655554432 33446776532 22 3456776665433 23446667777777764
Q ss_pred CCCCCCHhHHH---HHHHHH----------HhcCCHHHH-----------------------------------------
Q 010405 133 LDLEPNSAILV---SLLSAC----------AQLGALDYG----------------------------------------- 158 (511)
Q Consensus 133 ~~~~p~~~t~~---~ll~~~----------~~~~~~~~a----------------------------------------- 158 (511)
.....-..+|. ...... .....++.|
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 21111111221 111000 000011112
Q ss_pred --------------------------HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH-HHHHhcCC--C-Ceeeh
Q 010405 159 --------------------------NWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAM-QVFHSYGD--K-DVSAY 208 (511)
Q Consensus 159 --------------------------~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~~~--~-~~~~~ 208 (511)
..+|++++.. .+.+..+|-..+..+...|+.++|. ++|++... | +...|
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lw 381 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLA 381 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHH
Confidence 2233333333 1223444444444445555555664 66655443 2 22334
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCC---------CCCC------------HHHHHHHHHHHhccCCHHHHHHHHHHch
Q 010405 209 TSAIFGLAMNGHSIEAFELFENMKSKG---------ISPD------------SISYIAVLSACSHLGWVEKGFYYFHSMF 267 (511)
Q Consensus 209 ~~li~~~~~~g~~~~A~~~~~~m~~~g---------~~p~------------~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 267 (511)
-..+...-+.|+.++|.++|+++.... -.|+ ...|...+....+.|..+.|..+|..+.
T Consensus 382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~ 461 (679)
T 4e6h_A 382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR 461 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455555556666666666666665421 0121 1235555555555566666666666665
Q ss_pred hhcCCCCCHhHHHHHHHHHHHcC-CHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCC---C
Q 010405 268 DVHGIKPELDHYACMVDLLGRAG-LLEEAENFIASM-P-MKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQN---H 341 (511)
Q Consensus 268 ~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~ 341 (511)
+..+ .+....|...+..-.+.| +.+.|.++|+.. . ..-+...|...+......|+.+.|..+|++++...|+ .
T Consensus 462 ~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~ 540 (679)
T 4e6h_A 462 RLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLL 540 (679)
T ss_dssp HTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHH
T ss_pred HhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 5201 112223333333333333 366666666554 1 1124445555555555566666666666666665542 2
Q ss_pred chhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010405 342 DGRYILLSNIYVETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 342 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 371 (511)
...|...+..-.+.|+.+.+.++.+++.+.
T Consensus 541 ~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 541 KMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555555556666666666666666553
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.27 E-value=2.9e-10 Score=97.74 Aligned_cols=168 Identities=11% Similarity=0.005 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010405 174 SILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSAC 250 (511)
Q Consensus 174 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 250 (511)
...+..+...|...|++++|.+.|+++.+ .+..+|..+...+...|++++|...++++.... +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 44667778888888999999999988775 255677888888899999999999999987753 33567788888889
Q ss_pred hccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHH
Q 010405 251 SHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQ 328 (511)
Q Consensus 251 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 328 (511)
...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.++++ ...| +...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999998873 3456778888999999999999999999886 2233 6778888899999999999999
Q ss_pred HHHHHHhhcCCCCchh
Q 010405 329 RIGNMLIESDQNHDGR 344 (511)
Q Consensus 329 ~~~~~~~~~~p~~~~~ 344 (511)
..++++.+..|+++..
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999988876543
No 80
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.26 E-value=9e-11 Score=108.46 Aligned_cols=231 Identities=13% Similarity=0.072 Sum_probs=128.4
Q ss_pred HCCChhHHHHHHHHHHH-------CCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC-CccHHHHHHHH
Q 010405 116 QNGRPKEALALFREMQS-------LDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKK------CI-KLDSILCAALI 181 (511)
Q Consensus 116 ~~g~~~~A~~~~~~m~~-------~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li 181 (511)
..|++++|+.+|++..+ ...+....++..+...+...|++++|...++++++. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 44566666665555543 122224566777778888888888888888777654 21 22355677788
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010405 182 DMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261 (511)
Q Consensus 182 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 261 (511)
..|...|++++|.+.|++. ++++++......+....++..+...+...|++++|..
T Consensus 93 ~~~~~~g~~~~A~~~~~~a------------------------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 148 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRA------------------------LEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEY 148 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHH------------------------HHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHH------------------------HHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888777643 3333332211111123455556666666666666666
Q ss_pred HHHHchhhc-----CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhC-C---------CCCCH-HHHHHHHHHHHhcCc-
Q 010405 262 YFHSMFDVH-----GIKP-ELDHYACMVDLLGRAGLLEEAENFIASM-P---------MKPDN-VIWGTLLGACRVHRN- 323 (511)
Q Consensus 262 ~~~~~~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---------~~p~~-~~~~~ll~~~~~~g~- 323 (511)
+++++.+.. +..| ....+..+...|.+.|++++|.+.+++. . ..+.. ..|..+.......+.
T Consensus 149 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (283)
T 3edt_B 149 YYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKR 228 (283)
T ss_dssp HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCch
Confidence 666665520 1122 2445666666777777777777666554 0 12222 223333322332222
Q ss_pred -----hhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 324 -----AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 324 -----~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
+..+...++......|....++..++.+|...|++++|.+++++..+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 229 RDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22222223222223344456777888888888888888888887654
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.26 E-value=2.2e-10 Score=102.78 Aligned_cols=203 Identities=11% Similarity=0.015 Sum_probs=157.4
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHH
Q 010405 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIF 213 (511)
Q Consensus 137 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 213 (511)
.|+..+......+...|++++|...|+.+++...+++...+..+..+|.+.|++++|++.|++..+ .+..+|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 467888899999999999999999999999986546777777799999999999999999998764 34567888999
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCC-H-------HHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC---HhHHHHH
Q 010405 214 GLAMNGHSIEAFELFENMKSKGISPD-S-------ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE---LDHYACM 282 (511)
Q Consensus 214 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 282 (511)
.|...|++++|+..|++..+. .|+ . ..|..+...+...|++++|...|+++.+ ..|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 999999999999999999875 333 3 4577777888899999999999999986 3554 5677788
Q ss_pred HHHHHHcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHH
Q 010405 283 VDLLGRAGLLEEAENFIASM-P-MKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNI 351 (511)
Q Consensus 283 i~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 351 (511)
...|...|+. .++++ . ...+...+.... ....+.+++|+..++++.++.|+++.+...+..+
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 8888766543 22222 1 112344444433 3345678999999999999999998777666544
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.23 E-value=2.2e-09 Score=104.02 Aligned_cols=231 Identities=11% Similarity=-0.028 Sum_probs=119.8
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCCC-CCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC--c-cH
Q 010405 107 WVVLISGFAQNGRPKEALALFREMQSLDL-EPN----SAILVSLLSACAQLGALDYGNWVYSYIQKK----CIK--L-DS 174 (511)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~ 174 (511)
++.+...+...|++++|...+++...... .++ ..++..+...+...|++++|...+++..+. +.+ | ..
T Consensus 56 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 135 (373)
T 1hz4_A 56 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE 135 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHH
Confidence 44444555555555555555555433100 011 122344455555566666666555555432 111 1 22
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCC--C------CeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC-HHHHH-
Q 010405 175 ILCAALIDMYAKCGSIDLAMQVFHSYGD--K------DVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD-SISYI- 244 (511)
Q Consensus 175 ~~~~~li~~y~~~g~~~~A~~~~~~~~~--~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~- 244 (511)
.++..+...|...|++++|...+++... + ...+|..+...+...|++++|...+++.......++ ...+.
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 215 (373)
T 1hz4_A 136 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 215 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHH
Confidence 3444555566666666666666654321 1 112345555566666777777777666654211111 11111
Q ss_pred ----HHHHHHhccCCHHHHHHHHHHchhhcCCCC---CHhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCHH-
Q 010405 245 ----AVLSACSHLGWVEKGFYYFHSMFDVHGIKP---ELDHYACMVDLLGRAGLLEEAENFIASM-------PMKPDNV- 309 (511)
Q Consensus 245 ----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~- 309 (511)
..+..+...|+.++|...+..... ....+ ....+..+...+...|++++|.+.+++. +..++..
T Consensus 216 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 294 (373)
T 1hz4_A 216 NANKVRVIYWQMTGDKAAAANWLRHTAK-PEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 294 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHSCC-CCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhCCC-CCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHH
Confidence 122335567777777777777654 11111 1223556667777778877777777654 1111221
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHhhcC
Q 010405 310 IWGTLLGACRVHRNAEMGQRIGNMLIESD 338 (511)
Q Consensus 310 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 338 (511)
.+..+..++...|+.++|...++++....
T Consensus 295 ~~~~la~~~~~~g~~~~A~~~l~~al~~~ 323 (373)
T 1hz4_A 295 NLLLLNQLYWQAGRKSDAQRVLLDALKLA 323 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 44445566777788888888888777743
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.20 E-value=3e-10 Score=101.89 Aligned_cols=189 Identities=11% Similarity=-0.045 Sum_probs=127.5
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 010405 172 LDSILCAALIDMYAKCGSIDLAMQVFHSYGD----KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISP-DSISYIAV 246 (511)
Q Consensus 172 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l 246 (511)
.|+..+..+...|.+.|++++|.+.|++..+ ++...|..+..++...|++++|+..|++..+. .| +...+..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHH
Confidence 3556777778888888888888888876543 45556666777788888888888888887764 33 34567777
Q ss_pred HHHHhccCCHHHHHHHHHHchhhcCCCCCH-------hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---HHHHHHHH
Q 010405 247 LSACSHLGWVEKGFYYFHSMFDVHGIKPEL-------DHYACMVDLLGRAGLLEEAENFIASM-PMKPD---NVIWGTLL 315 (511)
Q Consensus 247 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll 315 (511)
...+...|++++|...+++..+.. +.+. ..|..+...+...|++++|.+.|++. ...|+ ...|..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 777888888888888888877622 2223 44667777777778888888887765 55565 33555555
Q ss_pred HHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010405 316 GACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 371 (511)
..+.. .+...++++..+.+.+...|..+ .....+.+++|...+++..+.
T Consensus 161 ~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 161 VLFYN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 55543 34455666666666554444333 234456679999999888763
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.16 E-value=6e-10 Score=116.52 Aligned_cols=159 Identities=14% Similarity=0.005 Sum_probs=80.4
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 010405 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMY 184 (511)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 184 (511)
.+|+.|...|.+.|++++|++.|++..+.. +-+..++..+..++.+.|++++|.+.|+++++.. +.+...+..|..+|
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 345555555555555555555555554432 1134455555555555555555555555555542 22344555555555
Q ss_pred HhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHH
Q 010405 185 AKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISP-DSISYIAVLSACSHLGWVEKGF 260 (511)
Q Consensus 185 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~ 260 (511)
.+.|++++|++.|++..+ .+..+|+.+...|...|++++|++.|++..+. .| +...+..+..++...|++++|.
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHHHH
Confidence 555555555555554432 23344555555555555555555555555543 22 2344555555555555555555
Q ss_pred HHHHHch
Q 010405 261 YYFHSMF 267 (511)
Q Consensus 261 ~~~~~~~ 267 (511)
+.++++.
T Consensus 166 ~~~~kal 172 (723)
T 4gyw_A 166 ERMKKLV 172 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.16 E-value=6.3e-10 Score=103.97 Aligned_cols=205 Identities=9% Similarity=-0.086 Sum_probs=101.5
Q ss_pred HHHHHHCCChhHHHHHHHHHHHC----CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 010405 111 ISGFAQNGRPKEALALFREMQSL----DLEPN-SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYA 185 (511)
Q Consensus 111 i~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 185 (511)
...|...|++++|++.|.+.... |-+++ ..+|..+..++...|++++|...+++.++.. .
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~---------------~ 108 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF---------------T 108 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------H
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---------------H
Confidence 55666677777777666655432 21111 3455666666666666666666666555421 0
Q ss_pred hcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHc-CChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHhccCCHHHH
Q 010405 186 KCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN-GHSIEAFELFENMKSKGIS-PD----SISYIAVLSACSHLGWVEKG 259 (511)
Q Consensus 186 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~g~~~~a 259 (511)
..|+...+ ..+|+.+...|... |++++|+..|++..+.... .+ ..++..+...+...|++++|
T Consensus 109 ~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 109 HRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 11111111 12344444455553 5555555555554432100 01 23455566666666777777
Q ss_pred HHHHHHchhhcCCCCCH-----hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH------HHHHHHHHHH--hcCchh
Q 010405 260 FYYFHSMFDVHGIKPEL-----DHYACMVDLLGRAGLLEEAENFIASM-PMKPDNV------IWGTLLGACR--VHRNAE 325 (511)
Q Consensus 260 ~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~------~~~~ll~~~~--~~g~~~ 325 (511)
...|++..+...-.+.. ..|..+..++...|++++|...+++. .+.|+.. .+..++.++. ..++++
T Consensus 178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~ 257 (292)
T 1qqe_A 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLS 257 (292)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHH
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Confidence 76666666521111111 13455666666677777777777665 3333321 2233444443 345566
Q ss_pred HHHHHHHHHhhcCCCC
Q 010405 326 MGQRIGNMLIESDQNH 341 (511)
Q Consensus 326 ~a~~~~~~~~~~~p~~ 341 (511)
+|+..|+++..++|..
T Consensus 258 ~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 258 EHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHTTSSCCCHHH
T ss_pred HHHHHhccCCccHHHH
Confidence 6666666666555543
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.12 E-value=3.7e-09 Score=97.46 Aligned_cols=210 Identities=10% Similarity=0.028 Sum_probs=122.4
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHC------CC-CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc------C-
Q 010405 104 LVSWVVLISGFAQNGRPKEALALFREMQSL------DL-EPNSAILVSLLSACAQLGALDYGNWVYSYIQKK------C- 169 (511)
Q Consensus 104 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~- 169 (511)
..+|..+...|...|++++|+..|++..+. +- +....++..+..++...|++++|...+.++.+. .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 457888888899999999999988887653 21 224567888889999999999999999888765 1
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010405 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSA 249 (511)
Q Consensus 170 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 249 (511)
.+....++..+...|...|++++|...|++. ++++........+....++..+...
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a------------------------l~~~~~~~~~~~~~~~~~~~~la~~ 178 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRA------------------------LEIYATRLGPDDPNVAKTKNNLASC 178 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH------------------------HHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------------HHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 1233567778888888888888888877743 2222222111111123345555555
Q ss_pred HhccCCHHHHHHHHHHchhhc------CCCCC-HhHHHHHHHHHHHc------CCHHHHHHHHHhCC-CCC-CHHHHHHH
Q 010405 250 CSHLGWVEKGFYYFHSMFDVH------GIKPE-LDHYACMVDLLGRA------GLLEEAENFIASMP-MKP-DNVIWGTL 314 (511)
Q Consensus 250 ~~~~g~~~~a~~~~~~~~~~~------~~~p~-~~~~~~li~~~~~~------g~~~~A~~~~~~~~-~~p-~~~~~~~l 314 (511)
+...|++++|..+++++.+.. ...+. ...+..+...+... ..+.++...++... ..| ...++..+
T Consensus 179 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 258 (283)
T 3edt_B 179 YLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSL 258 (283)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 556666666666665554410 11122 12222222222222 22444444455443 223 23466677
Q ss_pred HHHHHhcCchhHHHHHHHHHhhc
Q 010405 315 LGACRVHRNAEMGQRIGNMLIES 337 (511)
Q Consensus 315 l~~~~~~g~~~~a~~~~~~~~~~ 337 (511)
...+...|++++|...++++++.
T Consensus 259 a~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 259 GALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 77788888888888888887653
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.08 E-value=5.4e-09 Score=97.58 Aligned_cols=200 Identities=10% Similarity=0.006 Sum_probs=118.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCC-CC----H
Q 010405 74 VSWNSILGGLVRFGSVDDACRVFNQMPK-----RS----LVSWVVLISGFAQNGRPKEALALFREMQSLDLE-PN----S 139 (511)
Q Consensus 74 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~ 139 (511)
..|......|...|++++|...|++..+ .+ ..+|+.+...|.+.|++++|+..|++..+.... .+ .
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4677788899999999999999987642 12 358999999999999999999999887652100 01 2
Q ss_pred hHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHc
Q 010405 140 AILVSLLSACAQL-GALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218 (511)
Q Consensus 140 ~t~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 218 (511)
.++..+..++... |++++|...+++.++..... ++... ...+|+.+...|.+.
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~---------------~~~~~-----------~~~~~~~lg~~~~~~ 171 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQD---------------QSVAL-----------SNKCFIKCADLKALD 171 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT---------------TCHHH-----------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC---------------CChHH-----------HHHHHHHHHHHHHHh
Confidence 3445555555553 55555555555554421000 00000 012345555666666
Q ss_pred CChHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCH------hHHHHHHHHH
Q 010405 219 GHSIEAFELFENMKSKGISPDS------ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPEL------DHYACMVDLL 286 (511)
Q Consensus 219 g~~~~A~~~~~~m~~~g~~p~~------~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~------~~~~~li~~~ 286 (511)
|++++|+..|++.......... ..|..+..++...|++++|...|++..+ +.|+. ..+..++..+
T Consensus 172 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~l~~l~~~~ 248 (292)
T 1qqe_A 172 GQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLKSLIDAV 248 (292)
T ss_dssp TCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC---C---------HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCCCcHHHHHHHHHHHHH
Confidence 6666666666666654322211 1445556666677777777777777654 33321 1233444555
Q ss_pred H--HcCCHHHHHHHHHhC
Q 010405 287 G--RAGLLEEAENFIASM 302 (511)
Q Consensus 287 ~--~~g~~~~A~~~~~~~ 302 (511)
. ..+++++|.+.|+.+
T Consensus 249 ~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 249 NEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HTTCTTTHHHHHHHHTTS
T ss_pred HcCCHHHHHHHHHHhccC
Confidence 3 356688888888766
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.08 E-value=1.2e-08 Score=94.06 Aligned_cols=75 Identities=16% Similarity=0.046 Sum_probs=33.0
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----CeeehHHHHHHHHHcCChHHHHHHHHHHH
Q 010405 158 GNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDK-----DVSAYTSAIFGLAMNGHSIEAFELFENMK 232 (511)
Q Consensus 158 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 232 (511)
+...+++.++.+ +++......+..+|...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444332 223333334445555555555555555544221 22233444444555555555555555544
Q ss_pred h
Q 010405 233 S 233 (511)
Q Consensus 233 ~ 233 (511)
+
T Consensus 164 ~ 164 (310)
T 3mv2_B 164 N 164 (310)
T ss_dssp H
T ss_pred h
Confidence 4
No 89
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.07 E-value=1e-07 Score=98.57 Aligned_cols=216 Identities=8% Similarity=-0.041 Sum_probs=163.3
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 010405 123 ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGN-WVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201 (511)
Q Consensus 123 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 201 (511)
+..+|++.+.. .+-+...|...+.-+...|+.++|. .+++..+.. .|.+...|-.++...-+.|++++|.++|+++.
T Consensus 328 v~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 328 MTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34556555543 2335566666677777889999996 999999976 45677788889999999999999999999876
Q ss_pred C-------------CC------------eeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-cCC
Q 010405 202 D-------------KD------------VSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSH-LGW 255 (511)
Q Consensus 202 ~-------------~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~g~ 255 (511)
+ |+ ...|...+....+.|..+.|..+|.+..+.-..+....|......-.+ .++
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCC
Confidence 4 21 235778888888889999999999999876111123334332222223 356
Q ss_pred HHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCchhHHHHH
Q 010405 256 VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP----DNVIWGTLLGACRVHRNAEMGQRI 330 (511)
Q Consensus 256 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~ 330 (511)
.+.|..+|+...+. .+.+...+...++.....|+.+.|..+|++. ...| ....|...+..-...|+.+.+.++
T Consensus 486 ~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v 563 (679)
T 4e6h_A 486 TKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTL 563 (679)
T ss_dssp CHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred HHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999984 3445667778888888999999999999986 3333 345888899988999999999999
Q ss_pred HHHHhhcCCCCc
Q 010405 331 GNMLIESDQNHD 342 (511)
Q Consensus 331 ~~~~~~~~p~~~ 342 (511)
.+++.+..|+++
T Consensus 564 ~~R~~~~~P~~~ 575 (679)
T 4e6h_A 564 EKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHSTTCC
T ss_pred HHHHHHhCCCCc
Confidence 999999999874
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.05 E-value=1.4e-08 Score=92.95 Aligned_cols=205 Identities=9% Similarity=-0.026 Sum_probs=132.5
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C---eeehHHHHHHHHHcCChHHHHHHHHHHHhCCC-CCC-HHHH
Q 010405 172 LDSILCAALIDMYAKCGSIDLAMQVFHSYGD--K-D---VSAYTSAIFGLAMNGHSIEAFELFENMKSKGI-SPD-SISY 243 (511)
Q Consensus 172 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~ 243 (511)
.+...+-.+...+.+.|++++|...|+.+.+ | + ..++..+..+|.+.|++++|+..|++..+... .|. ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 3455666667777777777777777777654 2 2 34566667777777777777777777766421 112 2345
Q ss_pred HHHHHHHhc--------cCCHHHHHHHHHHchhhcCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 010405 244 IAVLSACSH--------LGWVEKGFYYFHSMFDVHGIKPE-LDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTL 314 (511)
Q Consensus 244 ~~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 314 (511)
..+..++.. .|++++|...|+++.+.. |+ ......+.......+.+ ...+..+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~---------------~~~~~~l 154 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKL---------------ARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHH---------------HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHH---------------HHHHHHH
Confidence 555556666 677777777777776622 22 22222221111111101 1124556
Q ss_pred HHHHHhcCchhHHHHHHHHHhhcCCCC---chhHHHHHHHHHHc----------CCchHHHHHHHHHHhCCCccCCceeE
Q 010405 315 LGACRVHRNAEMGQRIGNMLIESDQNH---DGRYILLSNIYVET----------LKGENAEEVRKTMRKRKIKRAPGCSL 381 (511)
Q Consensus 315 l~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~g~~~~~~~~~ 381 (511)
...+...|++++|+..++++++..|++ +..+..++.+|... |++++|...+++..+..
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~--------- 225 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF--------- 225 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC---------
Confidence 777899999999999999999998874 35788899999877 89999999999887632
Q ss_pred EEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHH
Q 010405 382 IELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKN 417 (511)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~ 417 (511)
..++...++...+.++...+.+
T Consensus 226 --------------p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 226 --------------PDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp --------------TTCTHHHHHHHHHHHHHHHHHH
T ss_pred --------------CCChHHHHHHHHHHHHHHHHHH
Confidence 2355666777666676666554
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.03 E-value=2e-08 Score=92.50 Aligned_cols=204 Identities=11% Similarity=0.049 Sum_probs=109.1
Q ss_pred HHHHcCChHHHHHHHccCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHH
Q 010405 51 GYVRNGEILEGLKLFDKMPQRN-DVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFRE 129 (511)
Q Consensus 51 ~~~~~g~~~~A~~~~~~m~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 129 (511)
-.--.|.+..++.-..++...+ ...-.-+.++|...|+.+... -..|.......+ ..|...+ |+..|++
T Consensus 22 n~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~-----~~~~~~~a~~~l-a~~~~~~----a~~~l~~ 91 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD-----PTSKLGKVLDLY-VQFLDTK----NIEELEN 91 (310)
T ss_dssp HHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC-----SSSTTHHHHHHH-HHHHTTT----CCHHHHH
T ss_pred HHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC-----CCCHHHHHHHHH-HHHhccc----HHHHHHH
Confidence 3344677777776555553322 222223346666666655310 112222233222 2233322 6666776
Q ss_pred HHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC----
Q 010405 130 MQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCI-KLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKD---- 204 (511)
Q Consensus 130 m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---- 204 (511)
....+ .++..++..+..++...|++++|.+++.+.+..+. ..+...+..++..|.+.|+.+.|.+.+++|.+.+
T Consensus 92 l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~ 170 (310)
T 3mv2_B 92 LLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTV 170 (310)
T ss_dssp TTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHH
T ss_pred HHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccc
Confidence 66554 45556666777777777888888877777766543 2355666677777778888888888877765422
Q ss_pred ---eeehHHHHHH--HHHcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHch
Q 010405 205 ---VSAYTSAIFG--LAMNG--HSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMF 267 (511)
Q Consensus 205 ---~~~~~~li~~--~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 267 (511)
-.+...+..+ ....| +..+|..+|+++.+. .|+..+-..++.++.+.|++++|...++.+.
T Consensus 171 ~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 171 SGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2333334433 22223 566666666665443 2332222233334555555555555555443
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.00 E-value=6.8e-09 Score=95.10 Aligned_cols=202 Identities=11% Similarity=-0.017 Sum_probs=144.0
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc---HHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----ee
Q 010405 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD---SILCAALIDMYAKCGSIDLAMQVFHSYGD--KD----VS 206 (511)
Q Consensus 136 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~----~~ 206 (511)
+.+...+..+...+...|++++|...|+.+++.. +.+ ...+..+..+|.+.|++++|+..|++..+ |+ ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3466788888899999999999999999999874 223 67888899999999999999999998764 32 23
Q ss_pred ehHHHHHHHHH--------cCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHh
Q 010405 207 AYTSAIFGLAM--------NGHSIEAFELFENMKSKGISPDS-ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELD 277 (511)
Q Consensus 207 ~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 277 (511)
++..+..++.. .|++++|+..|++.... .|+. .....+ ..+..+.. -...
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~-----~~~~ 149 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRA-----KLAR 149 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHH-----HHHH
Confidence 57777888888 99999999999999875 3432 222111 11111111 0012
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CchhHHHHHHHHHhhcCCCCc
Q 010405 278 HYACMVDLLGRAGLLEEAENFIASM-PMKPD----NVIWGTLLGACRVH----------RNAEMGQRIGNMLIESDQNHD 342 (511)
Q Consensus 278 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~ 342 (511)
.+..+...|.+.|++++|...|+++ ...|+ ...+..+..++... |++++|...++++.+..|+++
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 3566778888999999999988876 22233 34566666777655 889999999999999999885
Q ss_pred hh---HHHHHHHHHHcCCch
Q 010405 343 GR---YILLSNIYVETLKGE 359 (511)
Q Consensus 343 ~~---~~~l~~~~~~~g~~~ 359 (511)
.+ ...+..++...++++
T Consensus 230 ~~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 43 334444444444433
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.00 E-value=8.8e-09 Score=82.99 Aligned_cols=124 Identities=13% Similarity=0.132 Sum_probs=71.1
Q ss_pred HHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcC
Q 010405 245 AVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMK-PDNVIWGTLLGACRVHR 322 (511)
Q Consensus 245 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g 322 (511)
.+...+...|++++|..+++.+.+. .+.+...+..+...+...|++++|.+.++++ ... .+...|..+...+...|
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence 3444444455555555555554431 1223444455555555555555555555544 111 24445556666666667
Q ss_pred chhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 323 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
++++|.+.++++.+..|.++..+..++.+|...|++++|.+.++++.+
T Consensus 84 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 84 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 777777777777766666666666777777777777777777766654
No 94
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.99 E-value=5.5e-10 Score=92.99 Aligned_cols=138 Identities=6% Similarity=-0.071 Sum_probs=97.3
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCC-CHhHHHHHHHHHHHcCCH
Q 010405 215 LAMNGHSIEAFELFENMKSKGISPD-SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP-ELDHYACMVDLLGRAGLL 292 (511)
Q Consensus 215 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~ 292 (511)
+...|++++|+..+++.... .|+ ...+..+...|...|++++|++.|++..+ +.| +...|..+..+|.+.|++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCch
Confidence 34455666677666665442 222 33455666777777777777777777776 233 467777788888888888
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHH-HHHHHhhcCCCCchhHHHHHHHHHHcCC
Q 010405 293 EEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQR-IGNMLIESDQNHDGRYILLSNIYVETLK 357 (511)
Q Consensus 293 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 357 (511)
++|...|++. ...| +...|..+...+...|+.++|.+ .++++++++|+++.+|.....++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8888888776 4445 46678888888888888876555 4588888999888888888888877775
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.98 E-value=2.4e-08 Score=89.24 Aligned_cols=183 Identities=10% Similarity=-0.026 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCe----eehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH--HHHHH
Q 010405 174 SILCAALIDMYAKCGSIDLAMQVFHSYGD--KDV----SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDS--ISYIA 245 (511)
Q Consensus 174 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ 245 (511)
...+..+...+.+.|++++|+..|+++.+ |+. ..+..+..+|.+.|++++|+..|++..+....... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34555567778888888888888887764 322 35677778888888888888888888764322111 13333
Q ss_pred HHHHHhc------------------cCCHHHHHHHHHHchhhcCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 010405 246 VLSACSH------------------LGWVEKGFYYFHSMFDVHGIKPE-LDHYACMVDLLGRAGLLEEAENFIASMPMKP 306 (511)
Q Consensus 246 ll~~~~~------------------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 306 (511)
+..++.. .|+.++|...|+.+.+. .|+ ...+.+....- ......
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~----~~~~~~---------- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLV----FLKDRL---------- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHH----HHHHHH----------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHH----HHHHHH----------
Confidence 4444432 34555666666655542 122 11111111000 000000
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCc---hhHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 010405 307 DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD---GRYILLSNIYVETLKGENAEEVRKTMRKRKIK 374 (511)
Q Consensus 307 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 374 (511)
......+...+...|++++|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 00112345668889999999999999999999875 56889999999999999999999999886654
No 96
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.96 E-value=2e-08 Score=80.90 Aligned_cols=131 Identities=12% Similarity=0.131 Sum_probs=97.0
Q ss_pred ehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHH
Q 010405 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLL 286 (511)
Q Consensus 207 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 286 (511)
+|..+...+...|++++|+.+|+++...+ +.+...+..+...+...|++++|..+++.+.+. .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 35566677777777888888887776643 235566777777778888888888888887762 234466777788888
Q ss_pred HHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCC
Q 010405 287 GRAGLLEEAENFIASM-PMK-PDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQN 340 (511)
Q Consensus 287 ~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 340 (511)
.+.|++++|.+.++++ ... .+...+..+...+...|++++|...++++.+..|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 8888888888888776 222 35667778888888888999999988888887774
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.94 E-value=1.9e-09 Score=113.00 Aligned_cols=168 Identities=11% Similarity=-0.025 Sum_probs=105.7
Q ss_pred HhcCCHHHHHHHHHhcC--------C---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 010405 185 AKCGSIDLAMQVFHSYG--------D---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHL 253 (511)
Q Consensus 185 ~~~g~~~~A~~~~~~~~--------~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 253 (511)
...|++++|++.|++.. + .+...|..+...|.+.|++++|++.|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 45667777777766654 2 244556666666777777777777777766542 11445666666667777
Q ss_pred CCHHHHHHHHHHchhhcCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHH
Q 010405 254 GWVEKGFYYFHSMFDVHGIKP-ELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRI 330 (511)
Q Consensus 254 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 330 (511)
|++++|...|+++.+ ..| +...+..+..+|.+.|++++ .+.|++. ...| +...|..+..++...|++++|+..
T Consensus 481 g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777665 223 35566667777777777777 6666665 3333 455666666667777777777777
Q ss_pred HHHHhhcCCCCchhHHHHHHHHHHcCC
Q 010405 331 GNMLIESDQNHDGRYILLSNIYVETLK 357 (511)
Q Consensus 331 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 357 (511)
++++.+++|++..++..++.+|...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 777777777766677777766655444
No 98
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.92 E-value=2.3e-08 Score=93.01 Aligned_cols=174 Identities=7% Similarity=-0.036 Sum_probs=128.1
Q ss_pred HHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcC
Q 010405 192 LAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHG 271 (511)
Q Consensus 192 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 271 (511)
...+.+......+...+..+...+.+.|++++|+..|++..... +-+...+..+...+...|++++|...++.+..
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--- 179 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPL--- 179 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG---
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCch---
Confidence 33344444443344455666777778888888888888887753 22456777788888888999999998888876
Q ss_pred CCCCHhHHH-HHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC--chhHH
Q 010405 272 IKPELDHYA-CMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH--DGRYI 346 (511)
Q Consensus 272 ~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~ 346 (511)
..|+..... .....+.+.++.++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|++ ...+.
T Consensus 180 ~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~ 259 (287)
T 3qou_A 180 QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRX 259 (287)
T ss_dssp GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHH
T ss_pred hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHH
Confidence 245543322 2333466777777888887776 3344 56788888899999999999999999999999987 77899
Q ss_pred HHHHHHHHcCCchHHHHHHHHHH
Q 010405 347 LLSNIYVETLKGENAEEVRKTMR 369 (511)
Q Consensus 347 ~l~~~~~~~g~~~~A~~~~~~m~ 369 (511)
.|+.+|...|+.++|...+++..
T Consensus 260 ~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 260 TFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHHH
Confidence 99999999999999988887643
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.91 E-value=2.8e-08 Score=87.54 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=12.5
Q ss_pred HHHHHHHCCChhHHHHHHHHHHH
Q 010405 110 LISGFAQNGRPKEALALFREMQS 132 (511)
Q Consensus 110 li~~~~~~g~~~~A~~~~~~m~~ 132 (511)
....+.+.|++++|+..|++..+
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~ 32 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIA 32 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 33445555556666655555554
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.89 E-value=4.6e-08 Score=102.51 Aligned_cols=190 Identities=8% Similarity=-0.037 Sum_probs=145.4
Q ss_pred HhcCCHHHHHHHHHHHH--------HcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHc
Q 010405 150 AQLGALDYGNWVYSYIQ--------KKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMN 218 (511)
Q Consensus 150 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 218 (511)
...|++++|.+.+++++ +. .+.+...+..+...|.+.|++++|++.|++..+ .+...|..+...|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67889999999999988 43 245677888899999999999999999998775 4667888899999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHH
Q 010405 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENF 298 (511)
Q Consensus 219 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 298 (511)
|++++|++.|++..+... -+...+..+..++...|++++ ...|+++.+. -+.+...|..+..+|.+.|++++|.+.
T Consensus 481 g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999987532 256778888899999999999 9999999872 233477899999999999999999999
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHhcCc-----hhHHHHHHHHHhhcCCCCchh
Q 010405 299 IASM-PMKPD-NVIWGTLLGACRVHRN-----AEMGQRIGNMLIESDQNHDGR 344 (511)
Q Consensus 299 ~~~~-~~~p~-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~ 344 (511)
|++. ...|+ ...|..+..++...++ .+...+..+.+....+.++..
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 9998 56776 4567777777666554 234444444444454544443
No 101
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.87 E-value=9.9e-08 Score=84.29 Aligned_cols=159 Identities=6% Similarity=-0.145 Sum_probs=100.8
Q ss_pred eehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC----CHHHHHHHHHHchhhcCCCCCHhHHHH
Q 010405 206 SAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG----WVEKGFYYFHSMFDVHGIKPELDHYAC 281 (511)
Q Consensus 206 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~~~~ 281 (511)
.++..+...|...+++++|+.+|++..+.| +...+..|...|.. + +.++|..+|++..+ . -++..+..
T Consensus 19 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~-~---g~~~a~~~ 90 (212)
T 3rjv_A 19 RAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE-A---GSKSGEIV 90 (212)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH-T---TCHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH-C---CCHHHHHH
Confidence 334444444444455555555555555543 34455555555555 4 67777777777655 2 24555666
Q ss_pred HHHHHHH----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCchhHHHHHHHHHhhcCCCCchhHHHHH
Q 010405 282 MVDLLGR----AGLLEEAENFIASM-PMKPD---NVIWGTLLGACRV----HRNAEMGQRIGNMLIESDQNHDGRYILLS 349 (511)
Q Consensus 282 li~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 349 (511)
|...|.. .+++++|.+.|++. ...|+ +..+..|...|.. .++.++|...++++.+. |.++..+..|+
T Consensus 91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg 169 (212)
T 3rjv_A 91 LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAG 169 (212)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHH
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHH
Confidence 6666665 66777777777765 33332 5666667666666 67788888888888877 55667788888
Q ss_pred HHHHHc-C-----CchHHHHHHHHHHhCCC
Q 010405 350 NIYVET-L-----KGENAEEVRKTMRKRKI 373 (511)
Q Consensus 350 ~~~~~~-g-----~~~~A~~~~~~m~~~g~ 373 (511)
.+|... | ++++|.+.+++..+.|.
T Consensus 170 ~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 170 MMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 888764 3 78888888887776553
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.86 E-value=1.9e-08 Score=86.04 Aligned_cols=154 Identities=8% Similarity=-0.020 Sum_probs=86.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHH-HHHcC
Q 010405 212 IFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL-LGRAG 290 (511)
Q Consensus 212 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g 290 (511)
...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|...++.+.+. .|+...+..+... +...+
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHhhc
Confidence 334444455555555554443321 112334444444555555555555555555431 1222222111111 11111
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC--chhHHHHHHHHHHcCCchHHHHHHH
Q 010405 291 LLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH--DGRYILLSNIYVETLKGENAEEVRK 366 (511)
Q Consensus 291 ~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~ 366 (511)
...+|...+++. ...| +...+..+...+...|++++|...++++++.+|+. +..+..++.+|...|+.++|...++
T Consensus 89 ~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 89 AESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp TSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 222345555544 2334 46677778888888888888888888888888764 4578888888888888888888887
Q ss_pred HHH
Q 010405 367 TMR 369 (511)
Q Consensus 367 ~m~ 369 (511)
+..
T Consensus 169 ~al 171 (176)
T 2r5s_A 169 RQL 171 (176)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.86 E-value=1.3e-07 Score=80.70 Aligned_cols=50 Identities=10% Similarity=0.134 Sum_probs=20.3
Q ss_pred HHHHHcCChHHHHHHHccCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 010405 50 NGYVRNGEILEGLKLFDKMPQ---RNDVSWNSILGGLVRFGSVDDACRVFNQM 99 (511)
Q Consensus 50 ~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 99 (511)
..+.+.|++++|+..|++..+ .+...+..+...|.+.|++++|...|++.
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a 66 (176)
T 2r5s_A 14 SELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATI 66 (176)
T ss_dssp HHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 333444444444444444432 22333334444444444444444444443
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.85 E-value=5e-09 Score=87.11 Aligned_cols=122 Identities=10% Similarity=-0.007 Sum_probs=102.2
Q ss_pred HHHHHhccCCHHHHHHHHHHchhhcCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 010405 246 VLSACSHLGWVEKGFYYFHSMFDVHGIKPE-LDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHR 322 (511)
Q Consensus 246 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g 322 (511)
|...+...|++++|+..+..... ..|+ ...+..+...|.+.|++++|.+.|++. ...| +...|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 44566778999999999988765 3443 556778999999999999999999987 4455 6778999999999999
Q ss_pred chhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHH-HHHHHh
Q 010405 323 NAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEV-RKTMRK 370 (511)
Q Consensus 323 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~ 370 (511)
++++|+..++++++++|+++.++..++.+|.+.|++++|.+. +++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887765 466654
No 105
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.84 E-value=8.1e-08 Score=90.27 Aligned_cols=220 Identities=12% Similarity=0.019 Sum_probs=146.6
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 010405 117 NGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQV 196 (511)
Q Consensus 117 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 196 (511)
.|++++|.+++++..+.. +.. + +...++++.|...|.++ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 577889999988776531 111 0 01135666666655543 3456667777777777
Q ss_pred HHhcCC-----CC----eeehHHHHHHHHHcCChHHHHHHHHHHHhCC---CCCC--HHHHHHHHHHHhccCCHHHHHHH
Q 010405 197 FHSYGD-----KD----VSAYTSAIFGLAMNGHSIEAFELFENMKSKG---ISPD--SISYIAVLSACSHLGWVEKGFYY 262 (511)
Q Consensus 197 ~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~--~~t~~~ll~~~~~~g~~~~a~~~ 262 (511)
|.+..+ .+ ..+|+.+...|...|++++|+..|++....- -.|. ..++..+...|.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 665442 11 2357777788888888888888888765421 1121 3567778888888 999999999
Q ss_pred HHHchhhcCCC---C-CHhHHHHHHHHHHHcCCHHHHHHHHHhC-C---CCCC----HHHHHHHHHHHHhcCchhHHHHH
Q 010405 263 FHSMFDVHGIK---P-ELDHYACMVDLLGRAGLLEEAENFIASM-P---MKPD----NVIWGTLLGACRVHRNAEMGQRI 330 (511)
Q Consensus 263 ~~~~~~~~~~~---p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~~~~ll~~~~~~g~~~~a~~~ 330 (511)
|++..+...-. + ...++..+...|.+.|++++|.+.|++. . ..++ ...+..+...+...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99887632111 1 1467888899999999999999999876 1 1122 22556666677888999999999
Q ss_pred HHHHhhcCCCCchh-----HHHHHHHHHHcCCchHHHHH
Q 010405 331 GNMLIESDQNHDGR-----YILLSNIYVETLKGENAEEV 364 (511)
Q Consensus 331 ~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~~ 364 (511)
+++.+ ..|....+ ...++.+| ..|+.+.+.++
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999 88865432 33455555 56776666553
No 106
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.83 E-value=1e-07 Score=83.97 Aligned_cols=188 Identities=8% Similarity=-0.033 Sum_probs=118.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCC
Q 010405 141 ILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGH 220 (511)
Q Consensus 141 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 220 (511)
.+......+...|++++|...|+++++.. |.+...+... ........ ....++.+...|...|+
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~-----~~~~~~~~----------~~~~~~~lg~~~~~~g~ 69 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWT-----NVDKNSEI----------SSKLATELALAYKKNRN 69 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHH-----HSCTTSHH----------HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHh-----hhcchhhh----------hHHHHHHHHHHHHHCCC
Confidence 34445556777888888888888887763 1122222220 00000000 01122346777888888
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCC-CHhHHHHHHHHHHHcCC--HHHHHH
Q 010405 221 SIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP-ELDHYACMVDLLGRAGL--LEEAEN 297 (511)
Q Consensus 221 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~--~~~A~~ 297 (511)
+++|+..|++..+.. +-+...+..+..++...|++++|...|+++.+ +.| +...+..+...|...|. .+.+..
T Consensus 70 ~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~~~~~~~~~~~ 145 (208)
T 3urz_A 70 YDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYYLTAEQEKKKLET 145 (208)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 888888888887753 22566778888888888999999998888887 234 46778888887766654 345566
Q ss_pred HHHhCCCCCCHH--HHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHH
Q 010405 298 FIASMPMKPDNV--IWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSN 350 (511)
Q Consensus 298 ~~~~~~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 350 (511)
.++... .|+.. .+..+..++...|++++|+..+++++++.|++ .....|..
T Consensus 146 ~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~ 198 (208)
T 3urz_A 146 DYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDK 198 (208)
T ss_dssp HHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHH
T ss_pred HHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHH
Confidence 666553 34433 34444555667788999999999999999864 33334433
No 107
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.83 E-value=1.4e-07 Score=83.41 Aligned_cols=168 Identities=10% Similarity=-0.001 Sum_probs=110.5
Q ss_pred HHHHHhhCCC-CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC----CHHHHHHHHHHHH
Q 010405 92 ACRVFNQMPK-RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG----ALDYGNWVYSYIQ 166 (511)
Q Consensus 92 A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~----~~~~a~~~~~~~~ 166 (511)
|.+.|++..+ .++.++..|...|...+++++|+..|++..+.| +...+..|...|.. + +.++|...+++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 4444544432 456677777777777777777777777777654 55666666666666 5 7777777777776
Q ss_pred HcCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHhcCCCC-----eeehHHHHHHHHH----cCChHHHHHHHHHHHh
Q 010405 167 KKCIKLDSILCAALIDMYAK----CGSIDLAMQVFHSYGDKD-----VSAYTSAIFGLAM----NGHSIEAFELFENMKS 233 (511)
Q Consensus 167 ~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~----~g~~~~A~~~~~~m~~ 233 (511)
+.| +...+..|..+|.. .+++++|.+.|++..+.+ ..++..|...|.. .++.++|+.+|++..+
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 654 45566667777766 677777777777766532 4667777777776 6677777777777766
Q ss_pred CCCCCCHHHHHHHHHHHhcc-C-----CHHHHHHHHHHchh
Q 010405 234 KGISPDSISYIAVLSACSHL-G-----WVEKGFYYFHSMFD 268 (511)
Q Consensus 234 ~g~~p~~~t~~~ll~~~~~~-g-----~~~~a~~~~~~~~~ 268 (511)
. .++...+..|...|... | +.++|..+|+...+
T Consensus 158 ~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 158 L--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp T--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred c--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 5 22334455555555432 2 67777777777766
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.83 E-value=5.2e-08 Score=100.08 Aligned_cols=160 Identities=11% Similarity=-0.035 Sum_probs=123.7
Q ss_pred cCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010405 187 CGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263 (511)
Q Consensus 187 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 263 (511)
.|++++|.+.|++..+ .+...|..+...|...|++++|++.|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4789999999998875 356678999999999999999999999998863 225778888999999999999999999
Q ss_pred HHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CchhHHHHHHHHHhhcC
Q 010405 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVH---RNAEMGQRIGNMLIESD 338 (511)
Q Consensus 264 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~ 338 (511)
++..+. .+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|.+.++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999872 2345788999999999999999999999887 3344 567888888999999 99999999999999999
Q ss_pred CCCchhHHHHH
Q 010405 339 QNHDGRYILLS 349 (511)
Q Consensus 339 p~~~~~~~~l~ 349 (511)
|.+...|..+.
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99888887765
No 109
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.83 E-value=3.3e-08 Score=81.99 Aligned_cols=101 Identities=12% Similarity=0.041 Sum_probs=89.7
Q ss_pred CCCC-HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHH
Q 010405 272 IKPE-LDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILL 348 (511)
Q Consensus 272 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 348 (511)
+.|+ ...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..|+++.+++|+++.+|..+
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 4554 567888889999999999999999987 4445 677899999999999999999999999999999999999999
Q ss_pred HHHHHHcCCchHHHHHHHHHHhCC
Q 010405 349 SNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 349 ~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
+.+|...|++++|.+.+++..+..
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999988643
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.81 E-value=1.4e-07 Score=87.67 Aligned_cols=164 Identities=7% Similarity=-0.005 Sum_probs=102.2
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCeeehH-HHH
Q 010405 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD--KDVSAYT-SAI 212 (511)
Q Consensus 136 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~-~li 212 (511)
+.+...+..+...+...|++++|...++++++.. |.+...+..+..+|.+.|++++|...|+++.. |+..... ...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 3345566667777777888888888888877764 44566777778888888888888888887765 3322111 122
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCH
Q 010405 213 FGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLL 292 (511)
Q Consensus 213 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 292 (511)
..+...++.++|+..|++..... +.+...+..+..++...|++++|...|..+.+...-..+...+..++..|...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 23455666666777777666542 22455666666667777777777777777666221111244566666666666666
Q ss_pred HHHHHHHHh
Q 010405 293 EEAENFIAS 301 (511)
Q Consensus 293 ~~A~~~~~~ 301 (511)
++|...+++
T Consensus 272 ~~a~~~~r~ 280 (287)
T 3qou_A 272 DALASXYRR 280 (287)
T ss_dssp CHHHHHHHH
T ss_pred CcHHHHHHH
Confidence 666655543
No 111
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.81 E-value=6e-07 Score=83.44 Aligned_cols=219 Identities=9% Similarity=0.035 Sum_probs=108.7
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCccHHHHHHHHHHH----Hhc---CC
Q 010405 119 RPKEALALFREMQSLDLEPNSAILVSLLSACAQLG--ALDYGNWVYSYIQKKCIKLDSILCAALIDMY----AKC---GS 189 (511)
Q Consensus 119 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y----~~~---g~ 189 (511)
..++|++++..++..+ +-+...|+.-..++...+ +++++++.++.++..+ |-+..+|+.-...+ .+. ++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCC
Confidence 3356777777776643 224455666666666666 7777777777776654 33445555444433 333 45
Q ss_pred HHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010405 190 IDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSI--EAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFH 264 (511)
Q Consensus 190 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 264 (511)
+++++++++.+.+ ++..+|+--.-.+.+.|.++ ++++.+.++.+.... |...|+.-.......+..
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~-------- 196 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHL-------- 196 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGG--------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccc--------
Confidence 5555555555443 23344444444444455544 555555555544322 333443333333333320
Q ss_pred HchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhH-HHHHHHHHhhcC---
Q 010405 265 SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEM-GQRIGNMLIESD--- 338 (511)
Q Consensus 265 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~--- 338 (511)
.+ ...++++++.++++ ...| |...|+.+-..+...|+... ...+.+++.+++
T Consensus 197 ---------~~-------------~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 254 (306)
T 3dra_A 197 ---------AT-------------DNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQ 254 (306)
T ss_dssp ---------CC-------------HHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTE
T ss_pred ---------ch-------------hhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCC
Confidence 00 00044555554443 2222 44555555555544444222 334444444433
Q ss_pred CCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 339 QNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 339 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
|.++.++..++.+|.+.|+.++|.++++.+.+
T Consensus 255 ~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 255 VTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp ESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 55555555666666666666666666665543
No 112
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.79 E-value=2.1e-06 Score=79.69 Aligned_cols=226 Identities=10% Similarity=-0.009 Sum_probs=146.7
Q ss_pred HHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHHCC--ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHH----Hhc
Q 010405 82 GLVRFGSVDDACRVFNQMPK--R-SLVSWVVLISGFAQNG--RPKEALALFREMQSLDLEPNSAILVSLLSAC----AQL 152 (511)
Q Consensus 82 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~----~~~ 152 (511)
...+....++|+.+++++.. | +..+|+.--..+...| ++++++++++.+.... +-+..+|+.-...+ ...
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhc
Confidence 33444455789999998864 3 4567999888888888 9999999999998864 33566677665555 555
Q ss_pred ---CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHH--HHHHHHHhcCC---CCeeehHHHHHHHHHcCC----
Q 010405 153 ---GALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSID--LAMQVFHSYGD---KDVSAYTSAIFGLAMNGH---- 220 (511)
Q Consensus 153 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~--~A~~~~~~~~~---~~~~~~~~li~~~~~~g~---- 220 (511)
++++++..+++.+.+.. +-+-.+|+--.-.+.+.|+++ ++++.++++.+ .|..+|+.-...+...+.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCH
T ss_pred cccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchh
Confidence 78999999999999875 557888888888888899988 99999998876 455677766555555544
Q ss_pred --hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHH-HHH
Q 010405 221 --SIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEE-AEN 297 (511)
Q Consensus 221 --~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~ 297 (511)
++++++.++++....+. |...|+ .+...+.+.|+..+ +..
T Consensus 200 ~~~~eEl~~~~~aI~~~p~-n~SaW~------------------------------------y~~~ll~~~~~~~~~~~~ 242 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCPQ-NPSTWN------------------------------------YLLGIHERFDRSITQLEE 242 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSS-CHHHHH------------------------------------HHHHHHHHTTCCGGGGHH
T ss_pred hhHHHHHHHHHHHHHhCCC-CccHHH------------------------------------HHHHHHHhcCCChHHHHH
Confidence 44555555555443221 344444 44444444443222 222
Q ss_pred HHHhC-CC----CCCHHHHHHHHHHHHhcCchhHHHHHHHHHhh-cCCCCchhHH
Q 010405 298 FIASM-PM----KPDNVIWGTLLGACRVHRNAEMGQRIGNMLIE-SDQNHDGRYI 346 (511)
Q Consensus 298 ~~~~~-~~----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~ 346 (511)
+..+. .. ..++..+..+...+.+.|+.++|.++++.+.+ .+|.....|.
T Consensus 243 ~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~ 297 (306)
T 3dra_A 243 FSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWD 297 (306)
T ss_dssp HHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHH
Confidence 33332 11 12445555555555566666666666666665 5665544443
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.79 E-value=8.1e-08 Score=98.63 Aligned_cols=147 Identities=10% Similarity=-0.069 Sum_probs=108.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHH
Q 010405 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELF 228 (511)
Q Consensus 152 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 228 (511)
.|++++|.+.++++.+.. +.+...+..+...|.+.|++++|.+.|++..+ .+..+|..+...|...|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 478899999999988764 44678889999999999999999999998765 35667888999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHc---CCHHHHHHHHHhC
Q 010405 229 ENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRA---GLLEEAENFIASM 302 (511)
Q Consensus 229 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~ 302 (511)
++..+.. +.+...+..+..++...|++++|.+.|++..+. .+.+...+..+...+... |+.++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 9988753 225678888889999999999999999999872 233577888899999999 9999999998876
No 114
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.74 E-value=4.4e-07 Score=79.84 Aligned_cols=125 Identities=10% Similarity=-0.145 Sum_probs=70.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCH
Q 010405 76 WNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGAL 155 (511)
Q Consensus 76 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 155 (511)
+..+...+...|++++|...|++...++...|..+...|.+.|++++|+..|++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 34445555566666666666666655556666666666666666666666666665542 33455566666666666666
Q ss_pred HHHHHHHHHHHHcCCCc---------------cHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 010405 156 DYGNWVYSYIQKKCIKL---------------DSILCAALIDMYAKCGSIDLAMQVFHSYG 201 (511)
Q Consensus 156 ~~a~~~~~~~~~~~~~~---------------~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 201 (511)
++|.+.++.+.+..... ...++..+..+|.+.|++++|.+.|+...
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 66666666666542110 11344445555555555555555555443
No 115
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.72 E-value=8.2e-07 Score=79.11 Aligned_cols=57 Identities=12% Similarity=-0.009 Sum_probs=35.5
Q ss_pred HHHHHhccCCHHHHHHHHHHchhhcCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 010405 246 VLSACSHLGWVEKGFYYFHSMFDVHGIKPE-LDHYACMVDLLGRAGLLEEAENFIASM 302 (511)
Q Consensus 246 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 302 (511)
+...+...|++++|...|+.+.+.+.-.|. ...+..+..+|.+.|++++|.+.++.+
T Consensus 153 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 153 VAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 445566677777777777777663211111 245666777777777777777777665
No 116
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.72 E-value=7.8e-08 Score=77.10 Aligned_cols=94 Identities=10% Similarity=0.005 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q 010405 277 DHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVE 354 (511)
Q Consensus 277 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 354 (511)
..+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..++.+|..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 44555666666666666666666654 2233 455666666666666666666666666666666666666666666666
Q ss_pred cCCchHHHHHHHHHHh
Q 010405 355 TLKGENAEEVRKTMRK 370 (511)
Q Consensus 355 ~g~~~~A~~~~~~m~~ 370 (511)
.|++++|.+.+++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6666666666666554
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.71 E-value=4.1e-07 Score=80.06 Aligned_cols=121 Identities=8% Similarity=-0.091 Sum_probs=73.1
Q ss_pred HHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCc
Q 010405 246 VLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRN 323 (511)
Q Consensus 246 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 323 (511)
+...+...|++++|...|.+.. .|+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc
Confidence 4444555566666666555442 245555566666666666666666666554 2222 44556666666666666
Q ss_pred hhHHHHHHHHHhhcCCCCc----------------hhHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010405 324 AEMGQRIGNMLIESDQNHD----------------GRYILLSNIYVETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 324 ~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 371 (511)
+++|...++++.+..|.+. .++..++.+|...|++++|.+.+++..+.
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 6666666666666665554 66667777777777777777777766653
No 118
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.69 E-value=8.2e-08 Score=79.45 Aligned_cols=100 Identities=10% Similarity=-0.012 Sum_probs=86.4
Q ss_pred CCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHH
Q 010405 272 IKP-ELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILL 348 (511)
Q Consensus 272 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 348 (511)
+.| +...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..+
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 95 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA 95 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 344 3566777888899999999999999886 3344 677888888899999999999999999999999999999999
Q ss_pred HHHHHHcCCchHHHHHHHHHHhC
Q 010405 349 SNIYVETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 349 ~~~~~~~g~~~~A~~~~~~m~~~ 371 (511)
+.+|...|++++|.+.+++..+.
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999888753
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.68 E-value=2.7e-06 Score=79.07 Aligned_cols=160 Identities=11% Similarity=-0.026 Sum_probs=115.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCC-CCCCHH----HHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC----HhHHHH
Q 010405 211 AIFGLAMNGHSIEAFELFENMKSKG-ISPDSI----SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE----LDHYAC 281 (511)
Q Consensus 211 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 281 (511)
.+..+...|++++|..++++..... ..|+.. .+..+...+...|++++|...|..+.+...-.++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566777888888888888877632 122211 2334666677778899999999888762222222 336888
Q ss_pred HHHHHHHcCCHHHHHHHHHhCC-------CC-CC-HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC------chhHH
Q 010405 282 MVDLLGRAGLLEEAENFIASMP-------MK-PD-NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH------DGRYI 346 (511)
Q Consensus 282 li~~~~~~g~~~~A~~~~~~~~-------~~-p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 346 (511)
+...|...|++++|...|+++- .. +. ..++..+...|...|++++|...+++++++.+.. +.+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8889999999999888887651 11 22 2367788888999999999999999999854322 56888
Q ss_pred HHHHHHHHcCC-chHHHHHHHHHHh
Q 010405 347 LLSNIYVETLK-GENAEEVRKTMRK 370 (511)
Q Consensus 347 ~l~~~~~~~g~-~~~A~~~~~~m~~ 370 (511)
.++.+|.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 5999998887653
No 120
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.67 E-value=5.5e-07 Score=83.86 Aligned_cols=162 Identities=12% Similarity=-0.013 Sum_probs=115.9
Q ss_pred hHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHhccCCHHHHHHHHHHchhhcCC--CCC--HhH
Q 010405 208 YTSAIFGLAMNGHSIEAFELFENMKSKGISPDS-----ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGI--KPE--LDH 278 (511)
Q Consensus 208 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~p~--~~~ 278 (511)
+...+..+...|++++|++.+.+..+.....+. ..+..+...+...|++++|...+.+..+...- .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 344566677788888888888777664322111 12334555667788999999998887652111 111 457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCC------Cch
Q 010405 279 YACMVDLLGRAGLLEEAENFIASM----PMKPD-----NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQN------HDG 343 (511)
Q Consensus 279 ~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~ 343 (511)
++.+...|...|++++|...+++. ...|+ ..++..+...|...|++++|+..++++++..+. -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 888899999999999999888765 11222 257788888899999999999999999885332 146
Q ss_pred hHHHHHHHHHHcCCchHH-HHHHHHHH
Q 010405 344 RYILLSNIYVETLKGENA-EEVRKTMR 369 (511)
Q Consensus 344 ~~~~l~~~~~~~g~~~~A-~~~~~~m~ 369 (511)
+|..++.+|.+.|++++| ...+++..
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 788999999999999999 77677654
No 121
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.67 E-value=2.1e-07 Score=74.61 Aligned_cols=114 Identities=10% Similarity=-0.048 Sum_probs=93.2
Q ss_pred CCCC-HHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 010405 236 ISPD-SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWG 312 (511)
Q Consensus 236 ~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 312 (511)
+.|+ ...+......+.+.|++++|++.|++..+. -+.+...|..+..+|.+.|++++|++.|++. ...| +...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 4454 346677788888999999999999988872 2345788888999999999999999999886 3444 577888
Q ss_pred HHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHH
Q 010405 313 TLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNI 351 (511)
Q Consensus 313 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 351 (511)
.+..++...|++++|++.|+++++++|+++.++..|.++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 899999999999999999999999999998887776654
No 122
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.64 E-value=4.5e-08 Score=90.72 Aligned_cols=193 Identities=7% Similarity=-0.053 Sum_probs=96.2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHc
Q 010405 139 SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMN 218 (511)
Q Consensus 139 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 218 (511)
...+..+...+...|++++|...++.+++.. +.+...+..+..+|.+.|++++|.+.|++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~------------------- 63 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRR------------------- 63 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHH-------------------
Confidence 4445555555555666666666665555542 22444555555555555555555555554
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCH-hHHHHHHHHHHHcCCHHHHHH
Q 010405 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPEL-DHYACMVDLLGRAGLLEEAEN 297 (511)
Q Consensus 219 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~ 297 (511)
..+.. +.+...+..+..++...|++++|...|....+. .|+. ..+...+....+.........
T Consensus 64 ------------al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~ 127 (281)
T 2c2l_A 64 ------------ALELD-GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS 127 (281)
T ss_dssp ------------HTTSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH
T ss_pred ------------HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH
Confidence 43321 112334444455555555555555555554431 1110 001111111111111111111
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHc-CCchHHHHHHHHHHh
Q 010405 298 FIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVET-LKGENAEEVRKTMRK 370 (511)
Q Consensus 298 ~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~ 370 (511)
.......++......+ ..+. .|+.++|.+.++++.+.+|++......+...+.+. +.+++|.++|....+
T Consensus 128 -~~~~~~~~~~~i~~~l-~~l~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 128 -IEERRIHQESELHSYL-TRLI-AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp -HHHTCCCCCCHHHHHH-HHHH-HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred -HHHHHHhhhHHHHHHH-HHHH-HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 1112222233332222 3222 57888888888888888887766666777666666 678888888887765
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.62 E-value=5.9e-07 Score=75.28 Aligned_cols=128 Identities=8% Similarity=-0.090 Sum_probs=98.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 010405 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGAC 318 (511)
Q Consensus 241 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 318 (511)
..+..+...+...|++++|...|....+. .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34556666777788888888888887762 2335677788888888888888888888776 2333 567788888889
Q ss_pred HhcCchhHHHHHHHHHhhcCCCCchhHHHH--HHHHHHcCCchHHHHHHHHHHh
Q 010405 319 RVHRNAEMGQRIGNMLIESDQNHDGRYILL--SNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l--~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
...|++++|...++++.+..|.+...+..+ +..+...|++++|.+.++....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999999888777544 4448888999999999876643
No 124
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.62 E-value=4.7e-07 Score=82.28 Aligned_cols=192 Identities=9% Similarity=-0.115 Sum_probs=119.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCccHHHHHHH-------HHHHHhcCCHHHHHHHHHhcCC--C-Cee--------------
Q 010405 151 QLGALDYGNWVYSYIQKKCIKLDSILCAAL-------IDMYAKCGSIDLAMQVFHSYGD--K-DVS-------------- 206 (511)
Q Consensus 151 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------i~~y~~~g~~~~A~~~~~~~~~--~-~~~-------------- 206 (511)
..++...|.+.|.++.+.. |.....|+.+ ...+.+.++..++...+.+-.. | ...
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4566666777776666653 3344555555 3444444444555555544433 1 000
Q ss_pred -------ehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC--Hh
Q 010405 207 -------AYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE--LD 277 (511)
Q Consensus 207 -------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~ 277 (511)
.+-.....+...|++++|.++|..+... .|+......+...+.+.+++++|+..|....+ .. .|. ..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~-d~~~~~~ 172 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WP-DKFLAGA 172 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CS-CHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cC-CcccHHH
Confidence 0123456677788888888888777654 34443444455567788888888888875544 11 121 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHH
Q 010405 278 HYACMVDLLGRAGLLEEAENFIASMP---MKPD--NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILL 348 (511)
Q Consensus 278 ~~~~li~~~~~~g~~~~A~~~~~~~~---~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 348 (511)
.+..+..++.+.|++++|++.|++.. ..|. ...+.....++...|+.++|...|+++...+|+ +..+..|
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 56677888888888888888888762 1143 235556667788888888888888888888886 5554444
No 125
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.61 E-value=7.5e-07 Score=70.34 Aligned_cols=115 Identities=12% Similarity=0.120 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHH
Q 010405 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMK-PDNVIWGTLLGA 317 (511)
Q Consensus 240 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~ 317 (511)
...+..+...+...|++++|..++.++.+. .+.+...+..+...+.+.|++++|...++++ ... .+..+|..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 345666677777778888888888877762 2334667777888888888888888888776 222 356678888888
Q ss_pred HHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcC
Q 010405 318 CRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETL 356 (511)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 356 (511)
+...|++++|...++++.+..|.++..+..+..++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888999999999999999988888888888877776544
No 126
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.61 E-value=2.4e-05 Score=78.22 Aligned_cols=347 Identities=9% Similarity=-0.024 Sum_probs=212.3
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhcCC--CCChhHHHHHHHHHHHcCC-hHHHHHHHccCCC------CChhHHHHHH
Q 010405 10 DVFVKNSLIQFYSVCGRVRDARWVFDESD--DLDVVSWNSMINGYVRNGE-ILEGLKLFDKMPQ------RNDVSWNSIL 80 (511)
Q Consensus 10 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~------~~~~~~~~li 80 (511)
-..+|...+..|-. |+++.|..+|++.. .|++..|...+.-..+.+. .+....+|+.... .+...|...+
T Consensus 14 aR~vyer~l~~~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi 92 (493)
T 2uy1_A 14 PSAIMEHARRLYMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYI 92 (493)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 34567777777765 89999999999754 4799999999888777663 3445556665432 3567777777
Q ss_pred HHHH----hcCCHHHHHHHHhhCCC-C--Ch-hHHHHHHHHHH-------------HCCChhHHHHHHHHHHHCCCCCCH
Q 010405 81 GGLV----RFGSVDDACRVFNQMPK-R--SL-VSWVVLISGFA-------------QNGRPKEALALFREMQSLDLEPNS 139 (511)
Q Consensus 81 ~~~~----~~g~~~~A~~~~~~~~~-~--~~-~~~~~li~~~~-------------~~g~~~~A~~~~~~m~~~~~~p~~ 139 (511)
..+. ..++++.+.++|++... | +. ..|......-. ..+.+..|..+++.+...--..+.
T Consensus 93 ~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~ 172 (493)
T 2uy1_A 93 EEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSV 172 (493)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSH
T ss_pred HHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccH
Confidence 6554 34678899999998754 2 21 12222211100 112233444445444321000133
Q ss_pred hHHHHHHHHHHhc--CC-----HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHH
Q 010405 140 AILVSLLSACAQL--GA-----LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAI 212 (511)
Q Consensus 140 ~t~~~ll~~~~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li 212 (511)
..|...+.--... +- .+.+..+|++++... +.+..+|...+..+.+.|+.+.|..+|++.... +.+... -
T Consensus 173 ~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l-~ 249 (493)
T 2uy1_A 173 KNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFL-S 249 (493)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHH-H
T ss_pred HHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHH-H
Confidence 3555544442221 11 345678899988864 556788888888888999999999999876543 222221 1
Q ss_pred HHHHHcCChHHHHHHHHHHHhC---C------CCC---CHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHH
Q 010405 213 FGLAMNGHSIEAFELFENMKSK---G------ISP---DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA 280 (511)
Q Consensus 213 ~~~~~~g~~~~A~~~~~~m~~~---g------~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 280 (511)
..|+...+.++. ++.+.+. . ..+ ....|...+....+.+..+.|..+|..+ +..+ .+...|.
T Consensus 250 ~~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~i 323 (493)
T 2uy1_A 250 LYYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVFI 323 (493)
T ss_dssp HHHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHHH
T ss_pred HHHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHHH
Confidence 134333222222 2222211 0 011 1245666666666778899999999998 4122 3444554
Q ss_pred HHHHHHHHcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCC
Q 010405 281 CMVDLLGRAG-LLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLK 357 (511)
Q Consensus 281 ~li~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 357 (511)
..+..-.+.+ +.+.|..+|+.. ..-| ++..|...+.-....|+.+.|..+|+++. .....|...+..-...|+
T Consensus 324 ~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~ 399 (493)
T 2uy1_A 324 YCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGS 399 (493)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCC
Confidence 4333333344 699999999876 1113 34556777777788899999999999973 345677777777778899
Q ss_pred chHHHHHHHHHHh
Q 010405 358 GENAEEVRKTMRK 370 (511)
Q Consensus 358 ~~~A~~~~~~m~~ 370 (511)
.+.+.++++++.+
T Consensus 400 ~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 400 MELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998877764
No 127
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.60 E-value=1.9e-06 Score=86.25 Aligned_cols=321 Identities=11% Similarity=-0.057 Sum_probs=194.8
Q ss_pred hcC-ChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC--CChhHHHHHHHHHHhcCC-HHHHHHHHhh
Q 010405 23 VCG-RVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ--RNDVSWNSILGGLVRFGS-VDDACRVFNQ 98 (511)
Q Consensus 23 ~~g-~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~-~~~A~~~~~~ 98 (511)
+.| +++.|+.+|+... ..+-. |+++.+.++|++... |++..|...+.-..+.+. .+....+|+.
T Consensus 6 ~~~~~i~~aR~vyer~l-----------~~~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~ 73 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHAR-----------RLYMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEF 73 (493)
T ss_dssp ------CCHHHHHHHHH-----------HHHHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHH
T ss_pred HcCcchHHHHHHHHHHH-----------HHCCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 346 3777888877643 11111 889999999999876 899999988887777663 3455666665
Q ss_pred CC------CCChhHHHHHHHHHH----HCCChhHHHHHHHHHHHCCCCCC-H-hHHHHHHHHHHh--------------c
Q 010405 99 MP------KRSLVSWVVLISGFA----QNGRPKEALALFREMQSLDLEPN-S-AILVSLLSACAQ--------------L 152 (511)
Q Consensus 99 ~~------~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~p~-~-~t~~~ll~~~~~--------------~ 152 (511)
.. ..+...|...+..+. .+|+.+.+..+|++.+.. ++. . ..|..... +.. .
T Consensus 74 al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~-fE~~~~~~~~~~~~~~~~ 150 (493)
T 2uy1_A 74 TLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMGSLSELWKDFEN-FELELNKITGKKIVGDTL 150 (493)
T ss_dssp HHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCTTHHHHHHHHHH-HHHHHCHHHHHHHHHHHH
T ss_pred HHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHH-HHHHhccccHHHHHHHHh
Confidence 43 235577888776654 346788899999999873 222 1 12221111 111 1
Q ss_pred CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC--C-----HHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChH
Q 010405 153 GALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCG--S-----IDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSI 222 (511)
Q Consensus 153 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g--~-----~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 222 (511)
+.+..|..+++.+...--..+...|...++.-...+ - .+.+..+|+++.. .+...|...+.-+.+.|+.+
T Consensus 151 ~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~ 230 (493)
T 2uy1_A 151 PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKE 230 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Confidence 123334444444433200113345665555433221 1 3456678887664 34566888888888999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhc---C-----CCC---CHhHHHHHHHHHHHcCC
Q 010405 223 EAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH---G-----IKP---ELDHYACMVDLLGRAGL 291 (511)
Q Consensus 223 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~-----~~p---~~~~~~~li~~~~~~g~ 291 (511)
+|..+|++.... |+...+.. +|+.....++. ++.+.+.. . ..+ ....|...+..+.+.+.
T Consensus 231 ~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~ 301 (493)
T 2uy1_A 231 KAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRG 301 (493)
T ss_dssp HHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCC
Confidence 999999999886 55443222 12221111111 22222211 0 001 13456677777778889
Q ss_pred HHHHHHHHHhCCCCC--CHHHHHHHHHH-HHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 010405 292 LEEAENFIASMPMKP--DNVIWGTLLGA-CRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTM 368 (511)
Q Consensus 292 ~~~A~~~~~~~~~~p--~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 368 (511)
++.|..+|++.. .| +...|...... +...++.+.|..+|+.+.+..|+++..+...++...+.|+.+.|..++++.
T Consensus 302 ~~~AR~i~~~A~-~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 302 LELFRKLFIELG-NEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHHT-TSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhh-CCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999882 23 33444432222 222347999999999999988888777777888888999999999999886
No 128
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.59 E-value=2.6e-07 Score=86.72 Aligned_cols=195 Identities=7% Similarity=-0.060 Sum_probs=148.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh-cCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHH
Q 010405 152 LGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAK-CGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFEN 230 (511)
Q Consensus 152 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 230 (511)
.|++++|.+++++..+... .. +.+ .+++++|...|+.. ...|...|++++|...|.+
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~----------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS----------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC----------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc----------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHH
Confidence 5678889999988876521 11 122 58899999988764 5678899999999999998
Q ss_pred HHhC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHchhhc---CCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHh
Q 010405 231 MKSK----GISPD-SISYIAVLSACSHLGWVEKGFYYFHSMFDVH---GIKP-ELDHYACMVDLLGRAGLLEEAENFIAS 301 (511)
Q Consensus 231 m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 301 (511)
.... +-.+. ..+|..+...|...|++++|...|++..+.. |-.+ ...++..+...|.+ |++++|++.|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7653 21111 3478888889999999999999999887632 1111 14578888899988 999999999987
Q ss_pred C-CCC---CC----HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCc------hhHHHHHHHHHHcCCchHHHHHHHH
Q 010405 302 M-PMK---PD----NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD------GRYILLSNIYVETLKGENAEEVRKT 367 (511)
Q Consensus 302 ~-~~~---p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~ 367 (511)
. .+. .+ ..++..+...+...|++++|+..+++++++.|.+. ..+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6 111 11 35677888889999999999999999999765432 3666778888899999999999998
Q ss_pred HH
Q 010405 368 MR 369 (511)
Q Consensus 368 m~ 369 (511)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 87
No 129
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.58 E-value=5.7e-07 Score=73.65 Aligned_cols=95 Identities=13% Similarity=-0.031 Sum_probs=83.0
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 010405 276 LDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYV 353 (511)
Q Consensus 276 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 353 (511)
...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 456667788888999999999999886 3344 67788888888999999999999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHHHh
Q 010405 354 ETLKGENAEEVRKTMRK 370 (511)
Q Consensus 354 ~~g~~~~A~~~~~~m~~ 370 (511)
..|++++|.+.+++..+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999988875
No 130
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.58 E-value=7.9e-07 Score=70.88 Aligned_cols=118 Identities=8% Similarity=-0.026 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 010405 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGA 317 (511)
Q Consensus 240 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~ 317 (511)
...+..+...+...|++++|...|+...+. .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 445666677777888888888888887762 2335677788888888888888888888776 2333 56678888888
Q ss_pred HHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCch
Q 010405 318 CRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGE 359 (511)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 359 (511)
+...|++++|...++++.+..|.++..+..++.++...|+++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999988888889999998888753
No 131
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.56 E-value=4.3e-07 Score=79.09 Aligned_cols=115 Identities=16% Similarity=0.025 Sum_probs=56.6
Q ss_pred hcCCHHHHHH---HHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHC----CCC-CCHhHHHHHHHHHHhcCCHH
Q 010405 85 RFGSVDDACR---VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSL----DLE-PNSAILVSLLSACAQLGALD 156 (511)
Q Consensus 85 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-p~~~t~~~ll~~~~~~~~~~ 156 (511)
..|++++|.+ ++..-+.....+++.+...+...|++++|+..|++.... +.. ....++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455666666 443322233445666666666666666666666555431 111 12344555555566666666
Q ss_pred HHHHHHHHHHHc----CCC--ccHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 010405 157 YGNWVYSYIQKK----CIK--LDSILCAALIDMYAKCGSIDLAMQVFHS 199 (511)
Q Consensus 157 ~a~~~~~~~~~~----~~~--~~~~~~~~li~~y~~~g~~~~A~~~~~~ 199 (511)
+|...+++..+. +-. ....++..+...|...|++++|...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 666665555442 101 1123444555555555555555555543
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.56 E-value=7.6e-07 Score=71.38 Aligned_cols=116 Identities=6% Similarity=-0.034 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 010405 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGA 317 (511)
Q Consensus 240 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~ 317 (511)
...+..+...+...|++++|...|+...+ -.+.+...+..+...|...|++++|.+.+++. ...| +...|..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34455555566666666666666666654 11224555666666666666666666666654 2223 45667777777
Q ss_pred HHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCC
Q 010405 318 CRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLK 357 (511)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 357 (511)
+...|++++|...++++.+..|.+...+..+..++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 7888888888888888888888777777777777776653
No 133
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.55 E-value=3.8e-07 Score=86.82 Aligned_cols=126 Identities=6% Similarity=-0.087 Sum_probs=100.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC----------------HhHHHHHHHHHHHcCCHHHHHHHHHhC-C
Q 010405 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE----------------LDHYACMVDLLGRAGLLEEAENFIASM-P 303 (511)
Q Consensus 241 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----------------~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 303 (511)
..+..+...+...|++++|...|++..+. .|+ ...|..+..+|.+.|++++|...+++. .
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555555666666666666666666552 222 468888999999999999999999887 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHH-HHHHHHHH
Q 010405 304 MKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENA-EEVRKTMR 369 (511)
Q Consensus 304 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 369 (511)
..| +...|..+..++...|++++|+..|++++++.|++..++..+..++.+.|++++| ...++.|.
T Consensus 225 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 225 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 6778889999999999999999999999999999999999999999999999999 44566554
No 134
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.53 E-value=1.3e-06 Score=81.30 Aligned_cols=122 Identities=9% Similarity=-0.058 Sum_probs=72.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCC---Ch------hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCC-CC----HhHHHH
Q 010405 79 ILGGLVRFGSVDDACRVFNQMPKR---SL------VSWVVLISGFAQNGRPKEALALFREMQSLDLE-PN----SAILVS 144 (511)
Q Consensus 79 li~~~~~~g~~~~A~~~~~~~~~~---~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~t~~~ 144 (511)
.+..+...|++++|...+++..+. +. ..+..+...+...|++++|+..|++....... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 355667777777777777765431 11 12334556666667777777777777663222 22 225677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc-----CCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 010405 145 LLSACAQLGALDYGNWVYSYIQKK-----CIKL-DSILCAALIDMYAKCGSIDLAMQVFHSY 200 (511)
Q Consensus 145 ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~ 200 (511)
+..+|...|++++|...++++++. +..+ ...++..+...|.+.|++++|.+.+++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a 222 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 777777777777777777776641 1111 1235566666667777777666666543
No 135
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.52 E-value=4.8e-05 Score=71.41 Aligned_cols=180 Identities=7% Similarity=-0.004 Sum_probs=116.7
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 010405 107 WVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG-ALDYGNWVYSYIQKKCIKLDSILCAALIDMYA 185 (511)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 185 (511)
++.+-....+.+..++|++++.++...+ +-+..+|+.--.++...+ .++++.+.++.+++.. +-+..+|+.-...+.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3333334444555678888888888753 335566777777777777 5888888888888775 446777777777776
Q ss_pred hc-C-CHHHHHHHHHhcCCC---CeeehHHHHHHHHHcCChH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010405 186 KC-G-SIDLAMQVFHSYGDK---DVSAYTSAIFGLAMNGHSI--------EAFELFENMKSKGISPDSISYIAVLSACSH 252 (511)
Q Consensus 186 ~~-g-~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 252 (511)
+. + ++++++++++.+.+. |..+|+--.-.+.+.|.++ ++++.+.++.+..+. |...|+.....+.+
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVS 213 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTT
T ss_pred HhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 66 6 778888888888764 4445555544554445454 788888888776433 66666666666666
Q ss_pred cCC-------HHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCC
Q 010405 253 LGW-------VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGL 291 (511)
Q Consensus 253 ~g~-------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 291 (511)
.+. ++++++.++++... -+-|...|+.+-..+.+.|+
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred ccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 654 56677777666651 23345556655555555554
No 136
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.51 E-value=4.2e-07 Score=77.49 Aligned_cols=120 Identities=8% Similarity=0.001 Sum_probs=89.2
Q ss_pred hccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCch--h
Q 010405 251 SHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGA-CRVHRNA--E 325 (511)
Q Consensus 251 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~-~~~~g~~--~ 325 (511)
...|++++|...+....+. .+.+...+..+...|...|++++|...|++. ...| +...|..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 4456777777777777652 2335677778888888888888888888776 2223 56677777777 6788888 9
Q ss_pred HHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 326 MGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 326 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
+|...++++++..|.++..+..++.+|...|++++|...+++..+..
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99999999999999888888899999999999999999998887644
No 137
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.50 E-value=1.4e-06 Score=80.60 Aligned_cols=97 Identities=8% Similarity=-0.152 Sum_probs=76.9
Q ss_pred ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 010405 103 SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182 (511)
Q Consensus 103 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 182 (511)
+...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++++++.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34567788888889999999999998887753 3377888888888999999999999999888764 446677778888
Q ss_pred HHHhcCCHHHHHHHHHhcC
Q 010405 183 MYAKCGSIDLAMQVFHSYG 201 (511)
Q Consensus 183 ~y~~~g~~~~A~~~~~~~~ 201 (511)
+|...|++++|.+.|++..
T Consensus 81 ~~~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 8888888888887777543
No 138
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.48 E-value=9.7e-07 Score=80.22 Aligned_cols=178 Identities=10% Similarity=-0.035 Sum_probs=125.4
Q ss_pred hcCChHHHHHHHhcCC---CCChhHHHHH-------HHHHHHcCChHHHHHHHccCCC--C-------C-----------
Q 010405 23 VCGRVRDARWVFDESD---DLDVVSWNSM-------INGYVRNGEILEGLKLFDKMPQ--R-------N----------- 72 (511)
Q Consensus 23 ~~g~~~~A~~~f~~~~---~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~--~-------~----------- 72 (511)
..++.+.|++.|.+.. +.....|+.+ ...+.+.++..+++..+..-.+ | +
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 5789999999999765 4467789888 5667776667777776666654 1 1
Q ss_pred ----hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC--HhHHHH
Q 010405 73 ----DVSWNSILGGLVRFGSVDDACRVFNQMPK--RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPN--SAILVS 144 (511)
Q Consensus 73 ----~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~ 144 (511)
...+-.+...+...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+...... .|. ...+..
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~ 176 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVA 176 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHH
Confidence 11234466778889999999999998864 433366677778889999999999997654431 121 236777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 010405 145 LLSACAQLGALDYGNWVYSYIQKKCIKLD--SILCAALIDMYAKCGSIDLAMQVFHSYG 201 (511)
Q Consensus 145 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~~~ 201 (511)
+..++...|++++|+..|++.......|. ......+..++.+.|+.++|...|+++.
T Consensus 177 LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 177 HGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888888999999988888875433232 3355566667777777777777777654
No 139
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.48 E-value=1.2e-06 Score=69.96 Aligned_cols=96 Identities=16% Similarity=-0.001 Sum_probs=79.6
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 010405 276 LDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYV 353 (511)
Q Consensus 276 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 353 (511)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 445667777888888888888888776 3334 56788888888889999999999999999999998889999999999
Q ss_pred HcCCchHHHHHHHHHHhC
Q 010405 354 ETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 354 ~~g~~~~A~~~~~~m~~~ 371 (511)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999999887753
No 140
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.46 E-value=3e-06 Score=70.90 Aligned_cols=94 Identities=9% Similarity=-0.028 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 010405 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMY 184 (511)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 184 (511)
..|..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...++...+.. +.+..++..+..+|
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345556666666666666666666665542 2345555666666666666666666666665553 33444555555555
Q ss_pred HhcCCHHHHHHHHHhc
Q 010405 185 AKCGSIDLAMQVFHSY 200 (511)
Q Consensus 185 ~~~g~~~~A~~~~~~~ 200 (511)
...|++++|.+.|++.
T Consensus 92 ~~~~~~~~A~~~~~~a 107 (166)
T 1a17_A 92 MALGKFRAALRDYETV 107 (166)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHH
Confidence 5555555555555544
No 141
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.46 E-value=8.8e-07 Score=77.06 Aligned_cols=127 Identities=14% Similarity=-0.004 Sum_probs=80.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------C--ChhHHHHHHHHHHHCCChhHHHHHHHHHHHC----CCCC--
Q 010405 73 DVSWNSILGGLVRFGSVDDACRVFNQMPK-------R--SLVSWVVLISGFAQNGRPKEALALFREMQSL----DLEP-- 137 (511)
Q Consensus 73 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-- 137 (511)
..++..+...|...|++++|...|++..+ + ...+++.+...|...|++++|+..|++.... +-.|
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 34444555555555555555555544321 1 2346777888888888888888888776542 2111
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCcc--HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 010405 138 NSAILVSLLSACAQLGALDYGNWVYSYIQKKC---IKLD--SILCAALIDMYAKCGSIDLAMQVFHS 199 (511)
Q Consensus 138 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~ 199 (511)
....+..+...+...|++++|...+++..+.. -.+. ..++..+...|...|++++|.+.|++
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 172 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLR 172 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 23457777888888999999998888876531 1111 23456677778888888888777664
No 142
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.46 E-value=1e-06 Score=68.08 Aligned_cols=98 Identities=14% Similarity=0.053 Sum_probs=72.8
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCC--CchhHHHHHHH
Q 010405 276 LDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQN--HDGRYILLSNI 351 (511)
Q Consensus 276 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 351 (511)
...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++.+..|. +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 445666677777777777777777665 2223 5567777777788888888888888888888887 77788888888
Q ss_pred HHHc-CCchHHHHHHHHHHhCCC
Q 010405 352 YVET-LKGENAEEVRKTMRKRKI 373 (511)
Q Consensus 352 ~~~~-g~~~~A~~~~~~m~~~g~ 373 (511)
|... |++++|.+.++...+...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 8888 888888888887776443
No 143
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.45 E-value=5.3e-06 Score=77.08 Aligned_cols=93 Identities=10% Similarity=0.085 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH------hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---cc--H
Q 010405 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNS------AILVSLLSACAQLGALDYGNWVYSYIQKKCIK---LD--S 174 (511)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~ 174 (511)
.+...+..+...|++++|++.+.+..+.... .. ..+..+...+...|++++|...+.++.+.... +. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3444566666777777777777666554211 11 11223334444555666666665555542111 11 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHh
Q 010405 175 ILCAALIDMYAKCGSIDLAMQVFHS 199 (511)
Q Consensus 175 ~~~~~li~~y~~~g~~~~A~~~~~~ 199 (511)
.+++.+...|...|++++|...|++
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~k 180 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQ 180 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3455555555555555555555543
No 144
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.43 E-value=1.2e-05 Score=75.43 Aligned_cols=214 Identities=10% Similarity=0.084 Sum_probs=155.0
Q ss_pred CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC-CHHHHHHHHHhcCC---CCeeehHHHHHHHHHc-C-ChHHHHH
Q 010405 153 GALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCG-SIDLAMQVFHSYGD---KDVSAYTSAIFGLAMN-G-HSIEAFE 226 (511)
Q Consensus 153 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g-~~~~A~~ 226 (511)
...++|.++.+.++..+ +-+..+|+.--..+...| .++++++.++.+.. ++..+|+.-...+... + +++++++
T Consensus 68 e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 44568999999999885 446778888888888888 59999999998875 3555677777777766 7 8999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCCHH--------HHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCC-------
Q 010405 227 LFENMKSKGISPDSISYIAVLSACSHLGWVE--------KGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGL------- 291 (511)
Q Consensus 227 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~--------~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------- 291 (511)
++.++.+...+ |...|..-.-.+.+.|..+ ++++.++++.+. -+-|...|+....++.+.++
T Consensus 147 ~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 147 YIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHH
Confidence 99999876433 6666665555555555555 899999999872 23467778888888888776
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCch--------------------hHHHHHHHHHhhcC------CCCch
Q 010405 292 LEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNA--------------------EMGQRIGNMLIESD------QNHDG 343 (511)
Q Consensus 292 ~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~--------------------~~a~~~~~~~~~~~------p~~~~ 343 (511)
++++++.++++ ...| |...|+.+-..+...|+. .....+...+.... +.++.
T Consensus 224 ~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 303 (349)
T 3q7a_A 224 LQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPL 303 (349)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHH
Confidence 78888888776 3344 777888877777766654 22223332222222 35566
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 344 RYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 344 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
+...|+++|...|+.++|.++++.+.+
T Consensus 304 al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 304 ALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 778999999999999999999999864
No 145
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.42 E-value=8.3e-07 Score=70.43 Aligned_cols=95 Identities=11% Similarity=-0.064 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHc
Q 010405 278 HYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVET 355 (511)
Q Consensus 278 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 355 (511)
.+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4556777888999999999999887 3445 6778888888899999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhCC
Q 010405 356 LKGENAEEVRKTMRKRK 372 (511)
Q Consensus 356 g~~~~A~~~~~~m~~~g 372 (511)
|++++|...+++..+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999887643
No 146
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.41 E-value=3.1e-06 Score=68.35 Aligned_cols=98 Identities=12% Similarity=-0.031 Sum_probs=82.2
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHH
Q 010405 274 PELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNI 351 (511)
Q Consensus 274 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 351 (511)
.+...+..+...+...|++++|...|++. ...| +...|..+...+...|++++|...++++++..|+++.++..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 45677788888888888888888888776 3334 567888888888999999999999999999999998999999999
Q ss_pred HHHcCCchHHHHHHHHHHhC
Q 010405 352 YVETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 352 ~~~~g~~~~A~~~~~~m~~~ 371 (511)
|...|++++|...+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999887753
No 147
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.40 E-value=3.7e-05 Score=71.84 Aligned_cols=229 Identities=10% Similarity=0.038 Sum_probs=126.2
Q ss_pred HHCCChh-HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 010405 115 AQNGRPK-EALALFREMQSLDLEPNSAILVSLLSACAQLGA----------LDYGNWVYSYIQKKCIKLDSILCAALIDM 183 (511)
Q Consensus 115 ~~~g~~~-~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 183 (511)
.+.|.++ +|++++..+...+ +-+...|+.--.++...+. ++++..+++.++... |-+..+|+.-...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3455554 6777777777643 2233444443333333222 566777777777654 4466677766666
Q ss_pred HHhcC--CHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc----
Q 010405 184 YAKCG--SIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGH-SIEAFELFENMKSKGISPDSISYIAVLSACSHL---- 253 (511)
Q Consensus 184 y~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~---- 253 (511)
+.+.| .+++++++++.+.+ +|..+|+--.-.+...|. ++++++.+.++....+. |...|+.....+...
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcc
Confidence 66666 37777777777664 455566666666666666 47777777777765433 555555444443332
Q ss_pred ----------CCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHc-----------CCHHHHHHHHHhC-CCCCCHHHH
Q 010405 254 ----------GWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRA-----------GLLEEAENFIASM-PMKPDNVIW 311 (511)
Q Consensus 254 ----------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~-~~~p~~~~~ 311 (511)
+.++++++.+...... -+-|...|+-+-..+.+. +.++++++.++++ ...||. .|
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w 273 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KW 273 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HH
T ss_pred ccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-ch
Confidence 3456666666666651 223345555444444443 3455666666555 334443 23
Q ss_pred HHHHHH-----HHhcCchhHHHHHHHHHhhcCCCCchhHHHHH
Q 010405 312 GTLLGA-----CRVHRNAEMGQRIGNMLIESDQNHDGRYILLS 349 (511)
Q Consensus 312 ~~ll~~-----~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 349 (511)
..+-.+ ....|..++....+.++.+++|....-|..+.
T Consensus 274 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~ 316 (331)
T 3dss_A 274 CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 316 (331)
T ss_dssp HHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 221111 12345555666666666666666555544443
No 148
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.39 E-value=5.8e-07 Score=74.22 Aligned_cols=103 Identities=8% Similarity=-0.138 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 010405 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGA 317 (511)
Q Consensus 240 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~ 317 (511)
...+..+...+...|++++|...|+...+. -+.+...|..+..+|.+.|++++|.+.|++. ...| +...|..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 445666777788889999999999888762 2335777888888899999999999988876 3334 55677888888
Q ss_pred HHhcCchhHHHHHHHHHhhcCCCCchh
Q 010405 318 CRVHRNAEMGQRIGNMLIESDQNHDGR 344 (511)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~p~~~~~ 344 (511)
+...|++++|+..+++++++.|+++..
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 999999999999999999998877654
No 149
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.39 E-value=5.9e-06 Score=65.00 Aligned_cols=92 Identities=18% Similarity=0.290 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 010405 76 WNSILGGLVRFGSVDDACRVFNQMPK---RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQL 152 (511)
Q Consensus 76 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 152 (511)
+..+...|...|++++|...|+++.+ .+..+|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 90 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQ 90 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHh
Confidence 33334444444444444444443321 123344444444555555555555554444332 22344444444444455
Q ss_pred CCHHHHHHHHHHHHHc
Q 010405 153 GALDYGNWVYSYIQKK 168 (511)
Q Consensus 153 ~~~~~a~~~~~~~~~~ 168 (511)
|++++|...++.+.+.
T Consensus 91 ~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 91 GDYDEAIEYYQKALEL 106 (125)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHh
Confidence 5555555555444443
No 150
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.39 E-value=2.9e-06 Score=67.91 Aligned_cols=98 Identities=8% Similarity=-0.059 Sum_probs=88.5
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHH
Q 010405 274 PELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNI 351 (511)
Q Consensus 274 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 351 (511)
.+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|+..++++.+..|.++.++..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34677888999999999999999999987 4455 677888889999999999999999999999999999999999999
Q ss_pred HHHcCCchHHHHHHHHHHhC
Q 010405 352 YVETLKGENAEEVRKTMRKR 371 (511)
Q Consensus 352 ~~~~g~~~~A~~~~~~m~~~ 371 (511)
|...|++++|.+.+++..+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999988763
No 151
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.38 E-value=4.2e-06 Score=69.12 Aligned_cols=91 Identities=16% Similarity=0.048 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 010405 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYA 185 (511)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 185 (511)
.|..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|...|+++++.. |.++..+..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 34444444444444555544444444432 2234444444444444444444444444444432 223333444444444
Q ss_pred hcCCHHHHHHHHH
Q 010405 186 KCGSIDLAMQVFH 198 (511)
Q Consensus 186 ~~g~~~~A~~~~~ 198 (511)
+.|++++|++.|+
T Consensus 116 ~lg~~~eA~~~~~ 128 (151)
T 3gyz_A 116 RLKAPLKAKECFE 128 (151)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHH
Confidence 4444444444443
No 152
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.37 E-value=2.6e-06 Score=71.54 Aligned_cols=95 Identities=9% Similarity=0.022 Sum_probs=57.8
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 010405 276 LDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYV 353 (511)
Q Consensus 276 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 353 (511)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344555555666666666666666554 2223 44555666666666666666666666666666666666666666666
Q ss_pred HcCCchHHHHHHHHHHh
Q 010405 354 ETLKGENAEEVRKTMRK 370 (511)
Q Consensus 354 ~~g~~~~A~~~~~~m~~ 370 (511)
..|++++|.+.+++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 66666666666665554
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.35 E-value=6.4e-06 Score=64.10 Aligned_cols=107 Identities=11% Similarity=0.024 Sum_probs=61.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 010405 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACR 319 (511)
Q Consensus 242 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 319 (511)
.+..+...+...|++++|...|+...+. .+.+...+..+...+.+.|++++|...+++. ...| +...|..+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3444555555566666666666665541 1223455555666666666666666666554 2222 3455666666666
Q ss_pred hcCchhHHHHHHHHHhhcCCCCchhHHHHHH
Q 010405 320 VHRNAEMGQRIGNMLIESDQNHDGRYILLSN 350 (511)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 350 (511)
..|++++|...++++.+..|.++..+..+..
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 6666777777776666666666555554443
No 154
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.35 E-value=3.5e-06 Score=73.21 Aligned_cols=168 Identities=5% Similarity=-0.143 Sum_probs=98.2
Q ss_pred HHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHH
Q 010405 183 MYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259 (511)
Q Consensus 183 ~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 259 (511)
.....|+++++.+.|+.-.+ .....|..+...+...|++++|+..|++..... |+...+... ..+.-
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~--------~~~~~ 82 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ--------ILLDK 82 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH--------HHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh--------hHHHH
Confidence 33444555555555543222 123345556666666677777777776666532 111100000 00000
Q ss_pred HHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhc
Q 010405 260 FYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIES 337 (511)
Q Consensus 260 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 337 (511)
.. ......+..+..+|.+.|++++|...+++. ...| +...+..+..++...|++++|...+++++++
T Consensus 83 -------~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 83 -------KK----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp -------HH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -------HH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 00 001356777888888899999998888876 3334 6678888888899999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHcCCchHHH-HHHHHHHhC
Q 010405 338 DQNHDGRYILLSNIYVETLKGENAE-EVRKTMRKR 371 (511)
Q Consensus 338 ~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~ 371 (511)
.|.++.++..+..++...++.+++. ..++.|...
T Consensus 152 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 152 NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999998888887777 455555443
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.35 E-value=4.7e-06 Score=64.86 Aligned_cols=98 Identities=10% Similarity=0.075 Sum_probs=87.0
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 010405 275 ELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIY 352 (511)
Q Consensus 275 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 352 (511)
....+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++.+..|.++..+..++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3556778889999999999999999987 3334 6778888889999999999999999999999999999999999999
Q ss_pred HHcCCchHHHHHHHHHHhCC
Q 010405 353 VETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 353 ~~~g~~~~A~~~~~~m~~~g 372 (511)
...|++++|.+.+++..+.+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 99999999999999887643
No 156
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.35 E-value=1.7e-06 Score=69.28 Aligned_cols=94 Identities=6% Similarity=-0.060 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCc-------hhHHH
Q 010405 277 DHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD-------GRYIL 347 (511)
Q Consensus 277 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-------~~~~~ 347 (511)
..+..+...+.+.|++++|++.|++. .+.| +...|..+..++...|++++|+..+++++++.|.+. .+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34566777777777777777777765 3344 456777777778888888888888888887766543 25666
Q ss_pred HHHHHHHcCCchHHHHHHHHHHh
Q 010405 348 LSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 348 l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
++.+|...|++++|.+.+++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 77777888888888888876654
No 157
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=5.6e-06 Score=67.62 Aligned_cols=95 Identities=9% Similarity=-0.054 Sum_probs=59.5
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHH
Q 010405 276 LDHYACMVDLLGRAGLLEEAENFIASM-PMKPD----NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSN 350 (511)
Q Consensus 276 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 350 (511)
...+..+...+...|++++|.+.|++. ...|+ ...|..+...+...|++++|+..++++.+..|+++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 445555566666666666666666554 34454 3455555566666666666666666666666666666666666
Q ss_pred HHHHcCCchHHHHHHHHHHh
Q 010405 351 IYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 351 ~~~~~g~~~~A~~~~~~m~~ 370 (511)
+|...|++++|.+.+++..+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666554
No 158
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.34 E-value=6.5e-06 Score=65.37 Aligned_cols=93 Identities=9% Similarity=-0.073 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 010405 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMY 184 (511)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 184 (511)
..|..+...+...|++++|+..|++..... +.+...+..+..++...|++++|...+....+.. +.+...+..+...|
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 344455555555555555555555554432 2244445555555555555555555555555442 22344444444445
Q ss_pred HhcCCHHHHHHHHHh
Q 010405 185 AKCGSIDLAMQVFHS 199 (511)
Q Consensus 185 ~~~g~~~~A~~~~~~ 199 (511)
.+.|++++|.+.|++
T Consensus 91 ~~~~~~~~A~~~~~~ 105 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKK 105 (131)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHH
Confidence 555555544444443
No 159
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.32 E-value=4.6e-06 Score=66.39 Aligned_cols=110 Identities=8% Similarity=-0.134 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 010405 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGAC 318 (511)
Q Consensus 241 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 318 (511)
..+..+...+...|++++|...|.+..+. .+.+...|..+..+|.+.|++++|...+++. ...| +...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34555666677777777777777777662 2334667777777788888888888777765 3334 466777777888
Q ss_pred HhcCchhHHHHHHHHHhhcC------CCCchhHHHHHHHH
Q 010405 319 RVHRNAEMGQRIGNMLIESD------QNHDGRYILLSNIY 352 (511)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 352 (511)
...|++++|...++++.++. |.+......+..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 88888888888888888877 76665555555443
No 160
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.32 E-value=3.9e-06 Score=71.35 Aligned_cols=127 Identities=7% Similarity=0.073 Sum_probs=97.3
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHH-HHHcCCH--
Q 010405 216 AMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDL-LGRAGLL-- 292 (511)
Q Consensus 216 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~-- 292 (511)
...|++++|+..+++..... +.+...+..+...+...|++++|...|+.+.+.. +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 45678888888888877653 2356788888888999999999999999988732 2356777788888 7788998
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhH
Q 010405 293 EEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRY 345 (511)
Q Consensus 293 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 345 (511)
++|...+++. ...| +...|..+...+...|++++|...++++.+..|+++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999999876 3344 567788888889999999999999999999999875443
No 161
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.30 E-value=3e-06 Score=69.20 Aligned_cols=105 Identities=9% Similarity=-0.127 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 010405 241 ISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGAC 318 (511)
Q Consensus 241 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 318 (511)
..+..+...+...|++++|...|+.+.+. -+.+...|..+..+|.+.|++++|...|++. ...| +...|..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 34555666778888888888888888762 2335677888888888889999988888876 3334 455777788888
Q ss_pred HhcCchhHHHHHHHHHhhcCCCCchhHHH
Q 010405 319 RVHRNAEMGQRIGNMLIESDQNHDGRYIL 347 (511)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 347 (511)
...|++++|...++++++..|+++.....
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 125 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEAL 125 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHH
Confidence 99999999999999999988877655443
No 162
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.30 E-value=6.3e-06 Score=69.12 Aligned_cols=109 Identities=12% Similarity=-0.011 Sum_probs=87.9
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 010405 239 DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLG 316 (511)
Q Consensus 239 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~ 316 (511)
+...+..+...+...|++++|+..|++..+. .+.+...|..+..+|.+.|++++|...|++. ...| +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3456667777888888888888888888772 2335778888889999999999999998876 3344 5778888999
Q ss_pred HHHhcCchhHHHHHHHHHhhcCCCCchhHHHHH
Q 010405 317 ACRVHRNAEMGQRIGNMLIESDQNHDGRYILLS 349 (511)
Q Consensus 317 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 349 (511)
++...|++++|...+++++++.|++...+....
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999999999999999887665443
No 163
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.29 E-value=7.8e-05 Score=69.63 Aligned_cols=217 Identities=10% Similarity=0.007 Sum_probs=155.7
Q ss_pred HhcCCH-HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC----------HHHHHHHHHhcCC---CCeeehHHHHHHH
Q 010405 150 AQLGAL-DYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGS----------IDLAMQVFHSYGD---KDVSAYTSAIFGL 215 (511)
Q Consensus 150 ~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~----------~~~A~~~~~~~~~---~~~~~~~~li~~~ 215 (511)
.+.|.+ ++|.+..+.++..+ |-+..+|+.--......|. +++++.+++.+.. ++..+|+.-...+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 344554 47899999999875 3356667765555544443 6788888887764 4667788877777
Q ss_pred HHcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC-HHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHc---
Q 010405 216 AMNG--HSIEAFELFENMKSKGISPDSISYIAVLSACSHLGW-VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRA--- 289 (511)
Q Consensus 216 ~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--- 289 (511)
...| .+++++.++.++.+...+ |...|+.-.-.+...|. .+++++.+..+.+. -+-|...|+....++.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCC
T ss_pred hccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhc
Confidence 7877 489999999999987543 67777766666777787 68999999999872 244566777776666655
Q ss_pred -----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CchhHHHHHHHHHhhcCCCCchhH
Q 010405 290 -----------GLLEEAENFIASM-PMKP-DNVIWGTLLGACRVH-----------RNAEMGQRIGNMLIESDQNHDGRY 345 (511)
Q Consensus 290 -----------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~ 345 (511)
+.++++++.+... ...| |...|+-+-..+... +.++++++.++++.++.|++...+
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l 275 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCL 275 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHH
Confidence 4588899888876 3344 777887666555544 457899999999999999886555
Q ss_pred HHHHHHH---HHcCCchHHHHHHHHHHh
Q 010405 346 ILLSNIY---VETLKGENAEEVRKTMRK 370 (511)
Q Consensus 346 ~~l~~~~---~~~g~~~~A~~~~~~m~~ 370 (511)
..++... ...|..+++...+.++.+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 276 LTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 4444322 235677788888888876
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=1.2e-05 Score=65.62 Aligned_cols=111 Identities=7% Similarity=-0.157 Sum_probs=82.6
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC----HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 010405 239 DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE----LDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWG 312 (511)
Q Consensus 239 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 312 (511)
+...+..+...+...|++++|...|+...+ ..|+ ...+..+...|...|++++|.+.+++. ...| +...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 445666667777777888888888877765 3454 566777788888888888888888765 3334 566777
Q ss_pred HHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 010405 313 TLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIY 352 (511)
Q Consensus 313 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 352 (511)
.+..++...|++++|...++++.+..|++...+..+..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 7888888889999999999999998888876666655543
No 165
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.27 E-value=7.3e-06 Score=77.83 Aligned_cols=95 Identities=13% Similarity=-0.026 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC--------------HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010405 104 LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPN--------------SAILVSLLSACAQLGALDYGNWVYSYIQKKC 169 (511)
Q Consensus 104 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 169 (511)
...|..+...|.+.|++++|+..|++..+...... ..+|..+..++...|++++|...++++++..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34566666667777777777777766665421111 2444444445555555555555555554442
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 010405 170 IKLDSILCAALIDMYAKCGSIDLAMQVFHS 199 (511)
Q Consensus 170 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 199 (511)
+.+...+..+..+|...|++++|+..|++
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 255 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQK 255 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 22344444444444444444444444443
No 166
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.24 E-value=1.8e-06 Score=75.06 Aligned_cols=120 Identities=11% Similarity=-0.035 Sum_probs=55.6
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCC-CC--------------HhH
Q 010405 80 LGGLVRFGSVDDACRVFNQMPKR---SLVSWVVLISGFAQNGRPKEALALFREMQSLDLE-PN--------------SAI 141 (511)
Q Consensus 80 i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~--------------~~t 141 (511)
+......|+++.|.+.++.-.+. ....+..+...+.+.|++++|+..|++....... |+ ...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 33344445555555555433221 2345666666677777777777777766653211 10 134
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 010405 142 LVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200 (511)
Q Consensus 142 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 200 (511)
+..+..++...|++++|...++.+++.. +.+...+..+..+|...|++++|.+.|++.
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 4445555555555555555555555442 223444444555555555555555544443
No 167
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.21 E-value=2.3e-05 Score=77.07 Aligned_cols=55 Identities=13% Similarity=0.050 Sum_probs=30.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCcc----------------HHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 010405 146 LSACAQLGALDYGNWVYSYIQKKCIKLD----------------SILCAALIDMYAKCGSIDLAMQVFHSY 200 (511)
Q Consensus 146 l~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~li~~y~~~g~~~~A~~~~~~~ 200 (511)
...+...|++++|.+.+..+++...... ...+..|+..|.+.|++++|.+.+..+
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~ 81 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHS 81 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4455667777777777777776432111 012344555555555555555555443
No 168
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.20 E-value=6.5e-06 Score=82.18 Aligned_cols=85 Identities=9% Similarity=0.028 Sum_probs=40.0
Q ss_pred HHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHH
Q 010405 183 MYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKG 259 (511)
Q Consensus 183 ~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 259 (511)
.|.+.|++++|++.|++..+ .+..+|..+..+|.+.|++++|++.+++..+.. +.+...+..+..++...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 34445555555555554332 233444455555555555555555555554432 11233444444445555555555
Q ss_pred HHHHHHchh
Q 010405 260 FYYFHSMFD 268 (511)
Q Consensus 260 ~~~~~~~~~ 268 (511)
.+.|++..+
T Consensus 94 ~~~~~~al~ 102 (477)
T 1wao_1 94 LRDYETVVK 102 (477)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555444
No 169
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.20 E-value=1.2e-05 Score=61.81 Aligned_cols=101 Identities=12% Similarity=0.031 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---CHHHHHHHH
Q 010405 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP---DNVIWGTLL 315 (511)
Q Consensus 240 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~ll 315 (511)
...+..+...+...|++++|...|++..+. .+.+...+..+...+...|++++|.+.+++. ...| +...|..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 344555666667777777777777777652 2234566777777788888888888877765 3333 466777788
Q ss_pred HHHHhc-CchhHHHHHHHHHhhcCCCCc
Q 010405 316 GACRVH-RNAEMGQRIGNMLIESDQNHD 342 (511)
Q Consensus 316 ~~~~~~-g~~~~a~~~~~~~~~~~p~~~ 342 (511)
..+... |++++|.+.++++....|.++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 888888 888888888888888877653
No 170
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.19 E-value=6.9e-06 Score=67.43 Aligned_cols=62 Identities=11% Similarity=-0.007 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHhhc-------CCCCchhH----HHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 309 VIWGTLLGACRVHRNAEMGQRIGNMLIES-------DQNHDGRY----ILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 309 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
..|..+..++...|++++|+..+++++++ +|+++..| +..+.++...|++++|+..+++..+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 37888888888889999999999988888 99998899 9999999999999999999988765
No 171
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.18 E-value=6.4e-06 Score=65.66 Aligned_cols=90 Identities=14% Similarity=0.094 Sum_probs=59.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC---chhHHHHHHHH
Q 010405 281 CMVDLLGRAGLLEEAENFIASM-PMKPDN----VIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH---DGRYILLSNIY 352 (511)
Q Consensus 281 ~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~ 352 (511)
.+...+.+.|++++|.+.|+.. ...|+. ..+..+..++...|++++|...++++.+..|++ +.++..++.+|
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3455566667777777666655 212222 355556666777777777777777777777766 55677777777
Q ss_pred HHcCCchHHHHHHHHHHh
Q 010405 353 VETLKGENAEEVRKTMRK 370 (511)
Q Consensus 353 ~~~g~~~~A~~~~~~m~~ 370 (511)
...|++++|...++...+
T Consensus 87 ~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 777777777777776665
No 172
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.17 E-value=4.2e-06 Score=83.58 Aligned_cols=116 Identities=7% Similarity=-0.097 Sum_probs=81.3
Q ss_pred HHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhH
Q 010405 249 ACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEM 326 (511)
Q Consensus 249 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 326 (511)
.+...|++++|.+.|++..+. -+.+...|..+..+|.+.|++++|.+.+++. ...| +...|..+..++...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 455667777777777777662 1223667777777777788888887777765 3344 45677777777888888888
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHH--HHHcCCchHHHHHHH
Q 010405 327 GQRIGNMLIESDQNHDGRYILLSNI--YVETLKGENAEEVRK 366 (511)
Q Consensus 327 a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 366 (511)
|++.++++.+..|++...+..+..+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888888888887777777776 777788888888776
No 173
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.17 E-value=1.5e-05 Score=64.24 Aligned_cols=100 Identities=4% Similarity=-0.271 Sum_probs=75.9
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 010405 239 DSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLG 316 (511)
Q Consensus 239 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~ 316 (511)
+...+..+...+...|++++|...|....+. .+.+...+..+...+...|++++|...+++. ...| +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4566777777788888888888888877762 2334677778888888888888888888776 3334 5667788888
Q ss_pred HHHhcCchhHHHHHHHHHhhcCCC
Q 010405 317 ACRVHRNAEMGQRIGNMLIESDQN 340 (511)
Q Consensus 317 ~~~~~g~~~~a~~~~~~~~~~~p~ 340 (511)
++...|++++|...++++.+..|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 888888999999999888887776
No 174
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.17 E-value=1.5e-05 Score=79.20 Aligned_cols=129 Identities=7% Similarity=-0.061 Sum_probs=95.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHchhhcCCCC-------------CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-
Q 010405 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP-------------ELDHYACMVDLLGRAGLLEEAENFIASM-PMKP- 306 (511)
Q Consensus 242 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-------------~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p- 306 (511)
.+..+...+.+.|++++|...|.+..+...-.+ ....|..+..+|.+.|++++|+..+++. ...|
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 455555566666666666666666655211111 1467888999999999999999999887 3334
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHH-HHHHHHh
Q 010405 307 DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEE-VRKTMRK 370 (511)
Q Consensus 307 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~m~~ 370 (511)
+...|..+..++...|++++|+..|+++++++|++..++..+..++.+.|+++++.+ .++.|..
T Consensus 350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677888999999999999999999999999999999999999999999999998875 4455543
No 175
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.17 E-value=1.9e-05 Score=63.00 Aligned_cols=61 Identities=8% Similarity=-0.093 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010405 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK 167 (511)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 167 (511)
++..+...+.+.|++++|++.|++..+.. +-+..+|..+..++...|++++|++.+++.++
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44455555555555555555555554432 22344444555555555555555555554443
No 176
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.13 E-value=2.9e-05 Score=76.33 Aligned_cols=161 Identities=11% Similarity=-0.035 Sum_probs=95.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCcc----HHHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----eee
Q 010405 142 LVSLLSACAQLGALDYGNWVYSYIQKKC-IKLD----SILCAALIDMYAKCGSIDLAMQVFHSYGD-----KD----VSA 207 (511)
Q Consensus 142 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~----~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~ 207 (511)
+..+...|...|++++|.+.+..+.+.- ..++ ..+.+.+...+...|+++.|.++++.... .+ ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4555666666666666666665554421 0111 11233333444455666777666655432 11 124
Q ss_pred hHHHHHHHHHcCChHHHHHHHHHHHhC--CC--CCC-HHHHHHHHHHHhccCCHHHHHHHHHHchhhcC-C--CCC--Hh
Q 010405 208 YTSAIFGLAMNGHSIEAFELFENMKSK--GI--SPD-SISYIAVLSACSHLGWVEKGFYYFHSMFDVHG-I--KPE--LD 277 (511)
Q Consensus 208 ~~~li~~~~~~g~~~~A~~~~~~m~~~--g~--~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~--~p~--~~ 277 (511)
+..+...|...|++++|..++++.... +. +|. ..++..++..|...|++++|..++++...... + +|. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 556677777777777777777776532 11 222 34677778888889999999988887765221 1 111 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC
Q 010405 278 HYACMVDLLGRAGLLEEAENFIASM 302 (511)
Q Consensus 278 ~~~~li~~~~~~g~~~~A~~~~~~~ 302 (511)
.+..+...+...|++++|...|.+.
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5667777778888988887776554
No 177
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.13 E-value=9.3e-06 Score=64.52 Aligned_cols=108 Identities=3% Similarity=-0.057 Sum_probs=60.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC----CCC----HHHHH
Q 010405 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PM----KPD----NVIWG 312 (511)
Q Consensus 242 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~ 312 (511)
.+..+...+...|++++|...|....+. .+.+...+..+...|...|++++|...+++. .. .++ ...|.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3444445555555555665555555541 1223445555556666666666666655554 11 112 44566
Q ss_pred HHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 010405 313 TLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIY 352 (511)
Q Consensus 313 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 352 (511)
.+...+...|++++|...++++.+..| ++.....+..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 666667777777777777777777666 445554444443
No 178
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.12 E-value=1.2e-05 Score=63.81 Aligned_cols=95 Identities=9% Similarity=0.011 Sum_probs=83.5
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC-------chhHH
Q 010405 276 LDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH-------DGRYI 346 (511)
Q Consensus 276 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~ 346 (511)
...+..+...+...|++++|...|++. ...| +...+..+...+...|++++|...++++.+..|.+ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456788889999999999999999887 2233 67788888899999999999999999999987765 77899
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHh
Q 010405 347 LLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 347 ~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
.++.+|...|++++|.+.+++..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999999999999999998876
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.09 E-value=2.6e-05 Score=64.41 Aligned_cols=128 Identities=11% Similarity=-0.004 Sum_probs=75.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC----HhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HHH
Q 010405 243 YIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE----LDHYACMVDLLGRAGLLEEAENFIASM----PMKPD----NVI 310 (511)
Q Consensus 243 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~ 310 (511)
+..+...+...|++++|...+.+..+...-.++ ...+..+...+...|++++|.+.+++. +..++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 344444455555555555555554431110011 134555666666666666666666554 11111 335
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHhhcCC------CCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 311 WGTLLGACRVHRNAEMGQRIGNMLIESDQ------NHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 311 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
+..+...+...|++++|...++++.+..+ .....+..++.+|...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55666667778888888888887776321 1134677888888999999999988877654
No 180
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.07 E-value=3.1e-05 Score=61.19 Aligned_cols=94 Identities=12% Similarity=-0.072 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 010405 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYA 185 (511)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 185 (511)
.+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++++++.. +.+...+..+..+|.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34556666677777777777777766643 3356666666777777777777777777776654 334556666666666
Q ss_pred hcCCHHHHHHHHHhcC
Q 010405 186 KCGSIDLAMQVFHSYG 201 (511)
Q Consensus 186 ~~g~~~~A~~~~~~~~ 201 (511)
+.|++++|+..|++..
T Consensus 97 ~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 97 NEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 6666666666666544
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.07 E-value=5.1e-05 Score=60.25 Aligned_cols=100 Identities=10% Similarity=-0.040 Sum_probs=62.8
Q ss_pred HHHHHhccCCHHHHHHHHHHchhhcCCCCCH---hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHH
Q 010405 246 VLSACSHLGWVEKGFYYFHSMFDVHGIKPEL---DHYACMVDLLGRAGLLEEAENFIASM-PMKPD----NVIWGTLLGA 317 (511)
Q Consensus 246 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~ 317 (511)
+...+...|++++|...|+.+.+.. +.+. ..+..+...+.+.|++++|...|++. ...|+ ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 3445556666666666666665521 1112 35556666777777777777777665 22232 4456666677
Q ss_pred HHhcCchhHHHHHHHHHhhcCCCCchhHHH
Q 010405 318 CRVHRNAEMGQRIGNMLIESDQNHDGRYIL 347 (511)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 347 (511)
+...|++++|...++++.+..|+++.....
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a 115 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAARVA 115 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHHHH
Confidence 778888888888888888888876544433
No 182
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.06 E-value=1.5e-05 Score=66.54 Aligned_cols=63 Identities=8% Similarity=0.107 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 308 NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 308 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
...|..+..++...|++++|+..++++++++|.++.+|..++.+|...|++++|...+++..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 356777888888999999999999999999999999999999999999999999999988765
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.06 E-value=3.8e-06 Score=66.00 Aligned_cols=82 Identities=11% Similarity=0.017 Sum_probs=48.0
Q ss_pred cCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHH
Q 010405 289 AGLLEEAENFIASM-PM---KP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEE 363 (511)
Q Consensus 289 ~g~~~~A~~~~~~~-~~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 363 (511)
.|++++|+..|++. .. .| +...|..+...+...|++++|+..++++++..|+++.++..++.+|...|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 35555555555554 22 13 233555555666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHh
Q 010405 364 VRKTMRK 370 (511)
Q Consensus 364 ~~~~m~~ 370 (511)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665544
No 184
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.04 E-value=5.4e-05 Score=75.20 Aligned_cols=125 Identities=11% Similarity=-0.007 Sum_probs=100.0
Q ss_pred HHhccCCHHHHHHHHHHchhhcC--C---CCC-HhHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCCHH-HHH
Q 010405 249 ACSHLGWVEKGFYYFHSMFDVHG--I---KPE-LDHYACMVDLLGRAGLLEEAENFIASM---------PMKPDNV-IWG 312 (511)
Q Consensus 249 ~~~~~g~~~~a~~~~~~~~~~~~--~---~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~~-~~~ 312 (511)
.+...|++++|..++++..+... + .|+ ..+++.|..+|...|++++|+.++++. +..|+.. +++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35678999999999988776322 1 222 567899999999999999999988775 3445543 788
Q ss_pred HHHHHHHhcCchhHHHHHHHHHhh-----cCCCCchh---HHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010405 313 TLLGACRVHRNAEMGQRIGNMLIE-----SDQNHDGR---YILLSNIYVETLKGENAEEVRKTMRKRKI 373 (511)
Q Consensus 313 ~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 373 (511)
.|...|...|++++|+.+++++++ ++|+++.+ ...|..++...+++++|+.++.+++++-.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999988 57776544 45778888999999999999999987543
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.04 E-value=2.5e-05 Score=75.06 Aligned_cols=90 Identities=7% Similarity=-0.089 Sum_probs=78.7
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 010405 275 ELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIY 352 (511)
Q Consensus 275 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 352 (511)
+...|..+..+|.+.|++++|.+.+++. ...| +...|..+..++...|++++|+..+++++++.|++...+..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3567888999999999999999999887 5556 5678888889999999999999999999999999999999999999
Q ss_pred HHcCCchHHHHH
Q 010405 353 VETLKGENAEEV 364 (511)
Q Consensus 353 ~~~g~~~~A~~~ 364 (511)
...++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 988888877653
No 186
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.00 E-value=2e-05 Score=65.05 Aligned_cols=93 Identities=14% Similarity=0.095 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCC-CC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCc-cHH
Q 010405 106 SWVVLISGFAQNGRPKEALALFREMQSLDLE-PN----SAILVSLLSACAQLGALDYGNWVYSYIQKKC----IKL-DSI 175 (511)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~ 175 (511)
++..+...|...|++++|+..+++..+.... ++ ..++..+...+...|++++|...++...+.. .++ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555555666666666666666555432100 01 1244455555555555555555555544321 000 122
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 010405 176 LCAALIDMYAKCGSIDLAMQVFH 198 (511)
Q Consensus 176 ~~~~li~~y~~~g~~~~A~~~~~ 198 (511)
++..+...|...|++++|.+.++
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~ 113 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHL 113 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 34444455555555555555444
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.00 E-value=1.3e-05 Score=76.26 Aligned_cols=94 Identities=10% Similarity=-0.114 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHH-HH
Q 010405 278 HYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIY-VE 354 (511)
Q Consensus 278 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~ 354 (511)
.|..+..+|.+.|++++|...+++. ...| +...|..+..++...|++++|+..|++++++.|+++.++..|..+. ..
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~ 311 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQE 311 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 6777788888888888888888776 3334 5667778888888888888888888888888888877777777663 34
Q ss_pred cCCchHHHHHHHHHHhC
Q 010405 355 TLKGENAEEVRKTMRKR 371 (511)
Q Consensus 355 ~g~~~~A~~~~~~m~~~ 371 (511)
.+..+.+.+.++.|...
T Consensus 312 ~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 312 KALYQKQKEMYKGIFKG 328 (338)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHhhCC
Confidence 45666777777776543
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.99 E-value=6.2e-06 Score=64.74 Aligned_cols=91 Identities=15% Similarity=0.129 Sum_probs=58.2
Q ss_pred cCCHHHHHHHHHHchhhcC--CCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHH
Q 010405 253 LGWVEKGFYYFHSMFDVHG--IKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQ 328 (511)
Q Consensus 253 ~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 328 (511)
.|++++|+..|++..+ .+ -+.+...+..+...|.+.|++++|.+.|++. ...| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~-~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIA-SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHH-cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 4566666666666665 11 1223456667777777777777777777765 2333 4556777777778888888888
Q ss_pred HHHHHHhhcCCCCchh
Q 010405 329 RIGNMLIESDQNHDGR 344 (511)
Q Consensus 329 ~~~~~~~~~~p~~~~~ 344 (511)
..++++++..|+++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 8888888877776544
No 189
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.95 E-value=2.1e-05 Score=64.51 Aligned_cols=102 Identities=11% Similarity=-0.003 Sum_probs=68.6
Q ss_pred HHHHHhccCCHHHHHHHHHHchhhcCCCC----------CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-------CCC
Q 010405 246 VLSACSHLGWVEKGFYYFHSMFDVHGIKP----------ELDHYACMVDLLGRAGLLEEAENFIASM-PM-------KPD 307 (511)
Q Consensus 246 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p----------~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-------~p~ 307 (511)
....+...|++++|...|++..+...-.| +...|..+..++.+.|++++|+..+++. .+ .|+
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd 96 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD 96 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc
Confidence 33444455555555555555544111100 1226777777777788877777776654 33 775
Q ss_pred H-HHH----HHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHH
Q 010405 308 N-VIW----GTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYIL 347 (511)
Q Consensus 308 ~-~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 347 (511)
. ..| .....++...|++++|+..|++++++.|.+...+..
T Consensus 97 ~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~ 141 (159)
T 2hr2_A 97 EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPG 141 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTT
T ss_pred hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 4 477 888899999999999999999999999988765443
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.94 E-value=2.3e-05 Score=65.48 Aligned_cols=74 Identities=14% Similarity=0.012 Sum_probs=59.8
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCc-hhHHHHH
Q 010405 276 LDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHD-GRYILLS 349 (511)
Q Consensus 276 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~ 349 (511)
...|..+..+|.+.|++++|...+++. ...| +...|..+..++...|++++|...++++++++|+++ .....+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~ 139 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMK 139 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 457888888999999999999988876 3344 567888888999999999999999999999999876 3344443
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.92 E-value=0.00028 Score=71.75 Aligned_cols=167 Identities=7% Similarity=-0.057 Sum_probs=117.4
Q ss_pred HHHHHHHHhcCC---CCeeehHHHHHHHHHcCC----------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC--C
Q 010405 191 DLAMQVFHSYGD---KDVSAYTSAIFGLAMNGH----------SIEAFELFENMKSKGISPDSISYIAVLSACSHLG--W 255 (511)
Q Consensus 191 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g--~ 255 (511)
++|++.++.+.. .+..+|+.--..+...|+ ++++++.++++.....+ +..+|..-.-++.+.+ +
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccccc
Confidence 344555554443 223344444444444444 67888888888775433 5666766666677777 6
Q ss_pred HHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------
Q 010405 256 VEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAG-LLEEAENFIASM-PMKP-DNVIWGTLLGACRVH----------- 321 (511)
Q Consensus 256 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~----------- 321 (511)
++++.+.++++.+. -+-+...|+.-..++.+.| .++++.+.++++ ...| |...|+.....+...
T Consensus 125 ~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 125 WARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred HHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 68888888888872 2335667777777777888 788888888877 4445 677787776665542
Q ss_pred ---CchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchH
Q 010405 322 ---RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGEN 360 (511)
Q Consensus 322 ---g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 360 (511)
+.++++.+.+++++..+|++..+|..+..++.+.++.++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999998888555
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.88 E-value=3.1e-05 Score=73.56 Aligned_cols=99 Identities=7% Similarity=0.023 Sum_probs=51.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHH-H
Q 010405 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKPDN-VIWGTLLGA-C 318 (511)
Q Consensus 242 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~-~ 318 (511)
.|..+..++.+.|++++|+..++...+. -+.+...|..+..+|...|++++|...|++. ...|+. ..+..+... .
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~ 309 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAE 309 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 6778888899999999999999999872 2345788999999999999999999999987 556643 345444444 3
Q ss_pred HhcCchhHHHHHHHHHhhcCCCCc
Q 010405 319 RVHRNAEMGQRIGNMLIESDQNHD 342 (511)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~p~~~ 342 (511)
...+..+.+...++++....|.++
T Consensus 310 ~~~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 310 QEKALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCC
Confidence 455677888899999999888654
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.85 E-value=4.1e-05 Score=58.91 Aligned_cols=92 Identities=10% Similarity=-0.054 Sum_probs=74.3
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC------chhHH
Q 010405 275 ELDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH------DGRYI 346 (511)
Q Consensus 275 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 346 (511)
+...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++..|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4556777888888889999999888876 3334 66788888888999999999999999999999987 67778
Q ss_pred HHHHHHHHcCCchHHHHHHH
Q 010405 347 LLSNIYVETLKGENAEEVRK 366 (511)
Q Consensus 347 ~l~~~~~~~g~~~~A~~~~~ 366 (511)
.++.++...|++++|.+.++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 88888888888777765544
No 194
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.83 E-value=0.00011 Score=72.97 Aligned_cols=130 Identities=12% Similarity=0.051 Sum_probs=74.2
Q ss_pred HHHCCChhHHHHHHHHHHHC---CCCC----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-Cc-cHHHHHH
Q 010405 114 FAQNGRPKEALALFREMQSL---DLEP----NSAILVSLLSACAQLGALDYGNWVYSYIQKK-----CI-KL-DSILCAA 179 (511)
Q Consensus 114 ~~~~g~~~~A~~~~~~m~~~---~~~p----~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~ 179 (511)
+..+|++++|+.++++.++. -+-| ...+++.|..+|...|++++|..+++++++. |. .| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45677777777777666432 1112 2345666777777777777777776666542 21 11 2345666
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCHHH
Q 010405 180 LIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPD-SISYIAVLSACSHLGWVEK 258 (511)
Q Consensus 180 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~ 258 (511)
|...|...|++++|+.+++ +|+++++...... .|+ ..+...+-.++...+.+++
T Consensus 399 La~~~~~~G~~~eA~~~~~------------------------~Al~i~~~~lG~~-Hp~~~~~~~~l~~~~~e~~~~~~ 453 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMIC------------------------KAYAILLVTHGPS-HPITKDLEAMRMQTEMELRMFRQ 453 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHH------------------------HHHHHHHHHTCTT-SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHH------------------------HHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666655 4444444433221 122 2234444455666777777
Q ss_pred HHHHHHHchh
Q 010405 259 GFYYFHSMFD 268 (511)
Q Consensus 259 a~~~~~~~~~ 268 (511)
|..+|..+.+
T Consensus 454 ae~~~~~~~~ 463 (490)
T 3n71_A 454 NEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777765
No 195
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.81 E-value=0.0002 Score=70.96 Aligned_cols=119 Identities=8% Similarity=-0.101 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC--------------HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 010405 105 VSWVVLISGFAQNGRPKEALALFREMQSLDLEPN--------------SAILVSLLSACAQLGALDYGNWVYSYIQKKCI 170 (511)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 170 (511)
..|..+...|.+.|++++|+..|++..+...... ...|..+..++.+.|++++|...++++++..
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 347 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD- 347 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 4677777778888888888888877766321111 2445555555555555555555555555543
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHH
Q 010405 171 KLDSILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEA 224 (511)
Q Consensus 171 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 224 (511)
+.+...+..+..+|...|++++|+..|++..+ .+..+|..+...+...++.+++
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 22344455555555555555555555554432 1233344444444444444433
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.80 E-value=0.00011 Score=54.00 Aligned_cols=81 Identities=15% Similarity=0.128 Sum_probs=65.2
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 010405 276 LDHYACMVDLLGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYV 353 (511)
Q Consensus 276 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 353 (511)
...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++.+..|.++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456777788888888888888888776 2233 56678888888899999999999999999999988888888888877
Q ss_pred HcC
Q 010405 354 ETL 356 (511)
Q Consensus 354 ~~g 356 (511)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 197
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.79 E-value=0.00018 Score=69.04 Aligned_cols=118 Identities=13% Similarity=0.029 Sum_probs=82.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC-------------------CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCC
Q 010405 76 WNSILGGLVRFGSVDDACRVFNQMPK-------------------RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLE 136 (511)
Q Consensus 76 ~~~li~~~~~~g~~~~A~~~~~~~~~-------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 136 (511)
+..+...|.+.|++++|...|++..+ .+..+|+.+..+|.+.|++++|++.+++..+.. +
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 304 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P 304 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-c
Confidence 45555666666666666666665442 134567778888888888888888888887653 3
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 010405 137 PNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQ 195 (511)
Q Consensus 137 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~ 195 (511)
.+...+..+..++...|++++|...++++.+.. +.+...+..+..++.+.++.+++.+
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777778888888888888888888887764 3356667777777777776666543
No 198
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.77 E-value=0.00011 Score=55.51 Aligned_cols=64 Identities=20% Similarity=0.192 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 307 DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 307 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
+...|..+...+...|++++|+..++++++.+|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5678888889999999999999999999999999999999999999999999999999988765
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.70 E-value=0.00019 Score=55.72 Aligned_cols=77 Identities=9% Similarity=-0.010 Sum_probs=62.9
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 294 EAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 294 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
+|.+.|++. ...| +...|..+...+...|++++|+..++++++..|.++..+..++.+|...|++++|...+++..+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555554 3344 5667888888889999999999999999999999888999999999999999999999988765
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.62 E-value=4.1e-05 Score=62.69 Aligned_cols=85 Identities=13% Similarity=0.013 Sum_probs=63.9
Q ss_pred HcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCc----------hhHHHHHHHHHhhcCCCCchhHHHHHHHHHHc
Q 010405 288 RAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRN----------AEMGQRIGNMLIESDQNHDGRYILLSNIYVET 355 (511)
Q Consensus 288 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 355 (511)
+.+++++|.+.++.. ...| +...|..+..++...++ +++|+..|+++++++|++..+|..++++|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 445566666666554 2333 45555555555555544 56999999999999999999999999999987
Q ss_pred C-----------CchHHHHHHHHHHhCC
Q 010405 356 L-----------KGENAEEVRKTMRKRK 372 (511)
Q Consensus 356 g-----------~~~~A~~~~~~m~~~g 372 (511)
| ++++|.+.|++..+.+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 5 8999999999988743
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.60 E-value=8.2e-05 Score=57.14 Aligned_cols=95 Identities=13% Similarity=0.030 Sum_probs=61.2
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc------HHHH
Q 010405 104 LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD------SILC 177 (511)
Q Consensus 104 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~ 177 (511)
...|..+...+.+.|++++|++.|++..+.. +.+...+..+..++...|++++|...++.+++... .+ ...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS-TAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS-STTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CccHHHHHHHHH
Confidence 4556677777777788888888777776653 33566777777777777777777777777776532 12 3444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhc
Q 010405 178 AALIDMYAKCGSIDLAMQVFHSY 200 (511)
Q Consensus 178 ~~li~~y~~~g~~~~A~~~~~~~ 200 (511)
..+..++...|+.+.|.+.|+++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHhHhhhHhHHHHh
Confidence 55555555555555555444443
No 202
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.59 E-value=0.0034 Score=66.92 Aligned_cols=167 Identities=15% Similarity=0.069 Sum_probs=120.8
Q ss_pred HHHHhcCChHHHHH-HHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCChhHHHHHHHHHHhcCCHHHHHHHHh
Q 010405 19 QFYSVCGRVRDARW-VFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFN 97 (511)
Q Consensus 19 ~~~~~~g~~~~A~~-~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 97 (511)
......+++++|.+ ++..++ +......++..+.+.|.+++|+++.+. . ..-.......|++++|.++.+
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~-----~---~~~f~~~l~~~~~~~A~~~~~ 676 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPD-----Q---DQKFELALKVGQLTLARDLLT 676 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCC-----H---HHHHHHHHHHTCHHHHHHHHT
T ss_pred hHHHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCC-----c---chheehhhhcCCHHHHHHHHH
Confidence 34445789999988 665544 122337788888999999999987642 1 122445678999999999987
Q ss_pred hCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHH
Q 010405 98 QMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILC 177 (511)
Q Consensus 98 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 177 (511)
.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...++.+....+-+.+...| -+
T Consensus 677 ~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~ 739 (814)
T 3mkq_A 677 DES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KF 739 (814)
T ss_dssp TCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CH
T ss_pred hhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------ch
Confidence 763 567899999999999999999999998753 4556666666888887777766666654 12
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHH
Q 010405 178 AALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFEN 230 (511)
Q Consensus 178 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 230 (511)
+....+|.+.|++++|++++. +.+++++|..+-+.
T Consensus 740 ~~A~~~~~~~g~~~~a~~~~~------------------~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 740 NLAFNAYWIAGDIQGAKDLLI------------------KSQRFSEAAFLGST 774 (814)
T ss_dssp HHHHHHHHHHTCHHHHHHHHH------------------HTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHH------------------HcCChHHHHHHHHH
Confidence 334455777888888877655 45677777776654
No 203
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.52 E-value=0.00039 Score=67.94 Aligned_cols=116 Identities=12% Similarity=0.046 Sum_probs=87.7
Q ss_pred HHHHHHcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhh-----cCCCCc---hh
Q 010405 283 VDLLGRAGLLEEAENFIASM---------PMKPD-NVIWGTLLGACRVHRNAEMGQRIGNMLIE-----SDQNHD---GR 344 (511)
Q Consensus 283 i~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~ 344 (511)
+..+.+.|++++|++++++. +..|+ ..+++.|..+|...|++++|+.+++++++ ..|+++ .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 45566789999999988765 12232 34788888999999999999999999987 345544 56
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHH
Q 010405 345 YILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIK 416 (511)
Q Consensus 345 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 416 (511)
+..|+.+|..+|++++|+.++++..+--.. .-...||...+++..+.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 778999999999999999999887651110 112469999999888887776665
No 204
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.48 E-value=0.00075 Score=50.09 Aligned_cols=68 Identities=4% Similarity=-0.053 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHHHhcCc---hhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010405 306 PDNVIWGTLLGACRVHRN---AEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKI 373 (511)
Q Consensus 306 p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 373 (511)
+|+..+..+..++...++ .++|..+++++++.+|+++.+...++..+.+.|++++|...|+++.+...
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 467778788877654444 79999999999999999999999999999999999999999999987654
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.45 E-value=0.0014 Score=52.79 Aligned_cols=109 Identities=16% Similarity=0.039 Sum_probs=57.1
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCCHHHHH
Q 010405 119 RPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAK----CGSIDLAM 194 (511)
Q Consensus 119 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~ 194 (511)
++++|++.|++..+.| .|+.. +...|...+..++|.+.+++..+.| +...+..|..+|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566666666666655 22222 4455555555666666666666654 44555556555655 45555555
Q ss_pred HHHHhcCC-CCeeehHHHHHHHHH----cCChHHHHHHHHHHHhCC
Q 010405 195 QVFHSYGD-KDVSAYTSAIFGLAM----NGHSIEAFELFENMKSKG 235 (511)
Q Consensus 195 ~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 235 (511)
+.|++..+ .+..++..|...|.. .++.++|+.+|++..+.|
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 55554432 233444444444444 445555555555544443
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.42 E-value=0.0014 Score=52.85 Aligned_cols=109 Identities=9% Similarity=-0.076 Sum_probs=53.8
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHH----cCCHHH
Q 010405 219 GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGR----AGLLEE 294 (511)
Q Consensus 219 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 294 (511)
++.++|+++|++..+.| .|+.. |...|...+.+++|.++|++..+ . -++..+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~-~---g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACE-L---NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHc-C---CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 34566666666666655 22322 44455555666666666666655 2 234445555555554 445555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCchhHHHHHHHHHhh
Q 010405 295 AENFIASMPMKPDNVIWGTLLGACRV----HRNAEMGQRIGNMLIE 336 (511)
Q Consensus 295 A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~ 336 (511)
|.+.|++.-..-++..+..|...|.. .++.++|...++++.+
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 55555444111233334444444433 3444444444444444
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.39 E-value=0.0021 Score=46.83 Aligned_cols=82 Identities=18% Similarity=0.147 Sum_probs=56.2
Q ss_pred hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 010405 104 LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDM 183 (511)
Q Consensus 104 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 183 (511)
...|..+...+.+.|++++|+..|++..+.. +.+..++..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3466677777777888888888887776643 3356677777777777888888888887777764 3355566666665
Q ss_pred HHhc
Q 010405 184 YAKC 187 (511)
Q Consensus 184 y~~~ 187 (511)
+.+.
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
No 208
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.30 E-value=0.0066 Score=61.60 Aligned_cols=113 Identities=5% Similarity=0.010 Sum_probs=58.8
Q ss_pred hhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC-
Q 010405 120 PKEALALFREMQSLDLEPNSAILVSLLSACAQLGA----------LDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCG- 188 (511)
Q Consensus 120 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g- 188 (511)
.++|++.++++.... +-+...|+.--.++...++ ++++.+.++.+.+.. +-+..+|+.-..++.+.|
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 345666666666542 2234445554444544444 566666666666553 334555555555555555
Q ss_pred -CHHHHHHHHHhcCC---CCeeehHHHHHHHHHcC-ChHHHHHHHHHHHhC
Q 010405 189 -SIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNG-HSIEAFELFENMKSK 234 (511)
Q Consensus 189 -~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~ 234 (511)
+++++++.++++.+ +|..+|+--...+...| .++++++.+.++.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~ 173 (567)
T 1dce_A 123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR 173 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT
T ss_pred ccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 44555555555443 34444554444444455 455555555555443
No 209
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.18 E-value=0.00032 Score=57.37 Aligned_cols=21 Identities=5% Similarity=0.224 Sum_probs=19.3
Q ss_pred CchhHHHHHHHHHhhcCCCCc
Q 010405 322 RNAEMGQRIGNMLIESDQNHD 342 (511)
Q Consensus 322 g~~~~a~~~~~~~~~~~p~~~ 342 (511)
|++++|++.|+++++++|++.
T Consensus 105 g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 105 HNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCH
T ss_pred ccHHHHHHHHHHHHHhCCCCH
Confidence 689999999999999999874
No 210
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.18 E-value=0.0024 Score=49.28 Aligned_cols=75 Identities=15% Similarity=-0.051 Sum_probs=36.7
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 010405 123 ALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199 (511)
Q Consensus 123 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 199 (511)
|++.|++..+.. +.+...+..+..++...|++++|...++.+++.. +.+...+..+..+|...|++++|...|++
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444444444432 2244455555555555555555555555555543 22344445555555555555555554443
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.16 E-value=0.00056 Score=66.74 Aligned_cols=82 Identities=12% Similarity=0.064 Sum_probs=65.1
Q ss_pred cCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHhcCchhHHHHHHHHHhh-----cCCCCc---hhHHHHHH
Q 010405 289 AGLLEEAENFIASM---------PMKPDN-VIWGTLLGACRVHRNAEMGQRIGNMLIE-----SDQNHD---GRYILLSN 350 (511)
Q Consensus 289 ~g~~~~A~~~~~~~---------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~~ 350 (511)
.|++++|+.++++. +..|+. .+++.|..+|...|++++|+.+++++++ ..|+++ .+++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46788888887654 233443 4788889999999999999999999988 355544 56788999
Q ss_pred HHHHcCCchHHHHHHHHHHh
Q 010405 351 IYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 351 ~~~~~g~~~~A~~~~~~m~~ 370 (511)
+|..+|++++|+.++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999987765
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.12 E-value=0.0027 Score=61.86 Aligned_cols=94 Identities=11% Similarity=-0.033 Sum_probs=73.2
Q ss_pred ccCCHHHHHHHHHHchhhcC--CC---CC-HhHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCCHH-HHHHHH
Q 010405 252 HLGWVEKGFYYFHSMFDVHG--IK---PE-LDHYACMVDLLGRAGLLEEAENFIASM---------PMKPDNV-IWGTLL 315 (511)
Q Consensus 252 ~~g~~~~a~~~~~~~~~~~~--~~---p~-~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~~-~~~~ll 315 (511)
..|++++|..++++..+... +. |+ ..+++.|..+|...|++++|+.++++. +..|+.. +++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 45788999999888765321 22 22 567889999999999999999988775 3445544 788899
Q ss_pred HHHHhcCchhHHHHHHHHHhh-----cCCCCchhH
Q 010405 316 GACRVHRNAEMGQRIGNMLIE-----SDQNHDGRY 345 (511)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~ 345 (511)
..|...|++++|+.+++++++ .+|+++.+-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 999999999999999999988 577776443
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.04 E-value=0.0052 Score=59.93 Aligned_cols=101 Identities=12% Similarity=-0.019 Sum_probs=77.1
Q ss_pred HHHHHhccCCHHHHHHHHHHchhhcC--CCCC----HhHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCCHH-
Q 010405 246 VLSACSHLGWVEKGFYYFHSMFDVHG--IKPE----LDHYACMVDLLGRAGLLEEAENFIASM---------PMKPDNV- 309 (511)
Q Consensus 246 ll~~~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~~- 309 (511)
.+..+...|++++|..++++..+... +.|+ ..+++.|..+|...|++++|+.++++. +..|+..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 34456677899999999988875321 2222 567888999999999999999988765 3445443
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHhh-----cCCCCchhHH
Q 010405 310 IWGTLLGACRVHRNAEMGQRIGNMLIE-----SDQNHDGRYI 346 (511)
Q Consensus 310 ~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~ 346 (511)
+++.|...|...|++++|+.+++++++ .+|+++.+-.
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 788888999999999999999999988 5787765544
No 214
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.01 E-value=0.027 Score=59.94 Aligned_cols=98 Identities=16% Similarity=0.147 Sum_probs=56.7
Q ss_pred HHhcCCHHHHHH-HHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 010405 83 LVRFGSVDDACR-VFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWV 161 (511)
Q Consensus 83 ~~~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 161 (511)
....+++++|.+ ++..++.+ .....++..+.+.|.+++|+++.+ +.. .-.......|+++.|.++
T Consensus 609 ~~~~~~~~~a~~~~l~~i~~~--~~~~~~~~~l~~~~~~~~a~~~~~---------~~~---~~f~~~l~~~~~~~A~~~ 674 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNVEGK--DSLTKIARFLEGQEYYEEALNISP---------DQD---QKFELALKVGQLTLARDL 674 (814)
T ss_dssp HHHTTCHHHHHHHTGGGCCCH--HHHHHHHHHHHHTTCHHHHHHHCC---------CHH---HHHHHHHHHTCHHHHHHH
T ss_pred HHHhCCHHHHHHHHHhcCCch--HHHHHHHHHHHhCCChHHheecCC---------Ccc---hheehhhhcCCHHHHHHH
Confidence 345677777777 55443311 122566666777777777776542 111 112234556777777666
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 010405 162 YSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200 (511)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 200 (511)
.+.+ .+...|..|..++.+.|+++.|++.|.++
T Consensus 675 ~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 675 LTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4322 35567777777777777777777665544
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.93 E-value=0.018 Score=54.04 Aligned_cols=137 Identities=9% Similarity=-0.068 Sum_probs=62.1
Q ss_pred CCeeehHHHHHHHH--HcC---ChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhc---cC-----CHHHHHHHHHHchh
Q 010405 203 KDVSAYTSAIFGLA--MNG---HSIEAFELFENMKSKGISPD-SISYIAVLSACSH---LG-----WVEKGFYYFHSMFD 268 (511)
Q Consensus 203 ~~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~---~g-----~~~~a~~~~~~~~~ 268 (511)
.+..+|...+.+.. ..+ ...+|..+|++..+. .|+ ...+..+.-++.. .+ ........+.....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 35566666665533 222 246788888887774 454 3334333333320 00 00000011111111
Q ss_pred hcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCC
Q 010405 269 VHGIKPELDHYACMVDLLGRAGLLEEAENFIASM-PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNH 341 (511)
Q Consensus 269 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 341 (511)
....+.++..|..+...+...|++++|...++++ ...|+...|..+...+...|++++|.+.++++..++|..
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 0111333445555544444455555555555554 233454444444444555555555555555555555543
No 216
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.92 E-value=0.002 Score=48.38 Aligned_cols=58 Identities=14% Similarity=0.054 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCeeehHHHHHHHHHcCChHHHHHHHHHH
Q 010405 174 SILCAALIDMYAKCGSIDLAMQVFHSYGD---KDVSAYTSAIFGLAMNGHSIEAFELFENM 231 (511)
Q Consensus 174 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 231 (511)
...+..+...|.+.|++++|++.|++..+ .+..+|..+..+|...|++++|++.|++.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444444444444444444444443322 12233444444444444444444444433
No 217
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.86 E-value=0.099 Score=40.70 Aligned_cols=140 Identities=9% Similarity=0.032 Sum_probs=97.7
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHH
Q 010405 216 AMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEA 295 (511)
Q Consensus 216 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 295 (511)
...|..++..++..+..... +..-|+.++.-....-+-+-..+.++.+-+.+.+. .+|++...
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHHH
Confidence 34577777777777766532 44455556655555555566666666665522222 35555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 010405 296 ENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIK 374 (511)
Q Consensus 296 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 374 (511)
..-+-.++ .+......-+......|..+.-.+++..+....|.++.....++.+|.+.|+..+|.+++++.-++|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 55555554 244455666788889999999999999987777778899999999999999999999999999999985
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.78 E-value=0.0075 Score=44.80 Aligned_cols=64 Identities=14% Similarity=0.064 Sum_probs=47.2
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhH
Q 010405 282 MVDLLGRAGLLEEAENFIASM-PMKP-DNV-IWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRY 345 (511)
Q Consensus 282 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 345 (511)
....+.+.|++++|.+.+++. ...| +.. .|..+..++...|++++|+..++++++.+|+++.++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 445667778888888887776 3334 455 677777778888888888888888888888877665
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.73 E-value=0.0037 Score=46.57 Aligned_cols=59 Identities=10% Similarity=0.071 Sum_probs=53.6
Q ss_pred HHHHHHhcCchhHHHHHHHHHhhcCCCCch-hHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 314 LLGACRVHRNAEMGQRIGNMLIESDQNHDG-RYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 314 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
....+...|++++|+..++++++..|.++. .+..++.+|...|++++|.+.+++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 345678889999999999999999999999 99999999999999999999999988643
No 220
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.66 E-value=0.015 Score=54.54 Aligned_cols=133 Identities=13% Similarity=0.043 Sum_probs=93.1
Q ss_pred CCCCHHHHHHHHHHHhc--c---CCHHHHHHHHHHchhhcCCCCC-HhHHHHHHHHHHH---cC--------CHHHHHHH
Q 010405 236 ISPDSISYIAVLSACSH--L---GWVEKGFYYFHSMFDVHGIKPE-LDHYACMVDLLGR---AG--------LLEEAENF 298 (511)
Q Consensus 236 ~~p~~~t~~~ll~~~~~--~---g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~---~g--------~~~~A~~~ 298 (511)
.+.+...|...+++... . ....+|..+|++..+ ..|+ ...|..+..+|.- .+ .+..|.+-
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 35567778777776432 2 345789999999987 4565 4455544444321 11 11223332
Q ss_pred HHhCCC-CCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 299 IASMPM-KPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 299 ~~~~~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
...+.. ..++..|.++.-.+...|++++|...+++++.++| +...|..++.++.-.|++++|.+.+++....+
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 233322 34777888887777778999999999999999997 46788899999999999999999998887644
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.54 E-value=0.019 Score=46.32 Aligned_cols=65 Identities=8% Similarity=-0.066 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHHHHhcC---chhHHHHHHHHHhhcC-C-CCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 306 PDNVIWGTLLGACRVHR---NAEMGQRIGNMLIESD-Q-NHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 306 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
++..+.-.+..++.+.+ +.++++.+++.+.+.+ | .+...++.|+-+|.+.|++++|.+.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 56777777777777777 6668888888888876 6 4467778888888999999999999988875
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.50 E-value=0.24 Score=40.95 Aligned_cols=104 Identities=14% Similarity=0.157 Sum_probs=71.9
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 010405 81 GGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNW 160 (511)
Q Consensus 81 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 160 (511)
....++|+++.|.++.+.+ .+...|..|.....+.|+++-|...|.+... +..+.-.|...|+.++-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4456788888888887766 4567899999999999999999988887642 4455556666777777666
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 010405 161 VYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201 (511)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 201 (511)
+-+.....| . ++.....+.-.|+++++.++|.+..
T Consensus 82 la~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 82 MQNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 666555554 1 2333344555677777777766543
No 223
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.98 E-value=0.15 Score=42.15 Aligned_cols=127 Identities=12% Similarity=0.031 Sum_probs=66.4
Q ss_pred HHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010405 184 YAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263 (511)
Q Consensus 184 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 263 (511)
..++|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+..+ |..+.-.|...|+.+.-..+-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 34566666666665554 2344566666666666666666666665432 223333344456655544443
Q ss_pred HHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 010405 264 HSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNML 334 (511)
Q Consensus 264 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 334 (511)
+.... .| -++.....+.-.|+++++.+++.+.+.-|.... .....|..+.|.++.+.+
T Consensus 84 ~iA~~-~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 84 NIAQT-RE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHH-Cc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 33332 11 234444455566777777777776653222211 123355566666665554
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.94 E-value=0.044 Score=41.27 Aligned_cols=73 Identities=11% Similarity=-0.002 Sum_probs=51.1
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHH
Q 010405 276 LDHYACMVDLLGRAGLLEEAENFIASM-----P----MKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYI 346 (511)
Q Consensus 276 ~~~~~~li~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 346 (511)
..-+-.|...+.+.|+++.|...|+.. + -.+....+..|..++.+.|+++.|...++++.++.|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 344455666666666666666666554 0 1134567788888899999999999999999999998866644
Q ss_pred HH
Q 010405 347 LL 348 (511)
Q Consensus 347 ~l 348 (511)
.+
T Consensus 85 n~ 86 (104)
T 2v5f_A 85 NL 86 (104)
T ss_dssp HH
T ss_pred hH
Confidence 43
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.90 E-value=0.044 Score=40.32 Aligned_cols=68 Identities=9% Similarity=0.067 Sum_probs=45.8
Q ss_pred CCCHhHHHHHHHHHHHcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCC
Q 010405 273 KPELDHYACMVDLLGRAGL---LEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQN 340 (511)
Q Consensus 273 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 340 (511)
+.++..+..+..++...++ .++|..++++. ...| ++..+..+...+...|++++|+..|+++++..|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3456666667776654444 57777777765 3444 4455555666677788888888888888887776
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.84 E-value=0.026 Score=50.78 Aligned_cols=87 Identities=11% Similarity=0.101 Sum_probs=65.8
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCchhHHHHHHHHHhhcCCCC-chhHHHHHHHHHHc-CCchH
Q 010405 292 LEEAENFIASM-PMKPD---NVIWGTLLGACRV-----HRNAEMGQRIGNMLIESDQNH-DGRYILLSNIYVET-LKGEN 360 (511)
Q Consensus 292 ~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 360 (511)
..+|...+++. .+.|+ ...|..|...|.. .|+.++|.+.|+++++++|+. ..+++..+..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34555555554 45565 4567777777776 489999999999999999964 88999999998884 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 010405 361 AEEVRKTMRKRKIKRAPG 378 (511)
Q Consensus 361 A~~~~~~m~~~g~~~~~~ 378 (511)
|.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999988766553343
No 227
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.71 E-value=0.00017 Score=69.00 Aligned_cols=263 Identities=13% Similarity=0.011 Sum_probs=149.4
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC--CChhHHHHHHHHHHhcC
Q 010405 10 DVFVKNSLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ--RNDVSWNSILGGLVRFG 87 (511)
Q Consensus 10 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g 87 (511)
.+.+|+.|..++.+.|++.+|++.| +...|+..|..+|.+..+.|.+++-+..+...++ +++.+=+.|+-+|++.+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~ 130 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTN 130 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSC
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhC
Confidence 4678888889998888888888766 4456677788899999999999999998888876 67777789999999999
Q ss_pred CHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010405 88 SVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQK 167 (511)
Q Consensus 88 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 167 (511)
++.+-++++ ..||..-...+..-|...|.++.|.-+|..+... .-|...+...|++..|.+. +.+
T Consensus 131 rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~---------akLAstLV~L~~yq~AVda---ArK 195 (624)
T 3lvg_A 131 RLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNF---------GRLASTLVHLGEYQAAVDG---ARK 195 (624)
T ss_dssp SSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCC---------TTTSSSSSSCSGGGSSTTT---TTT
T ss_pred cHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccH---------HHHHHHHHHHHHHHHHHHH---HHh
Confidence 877654443 2366655666777777888887777666554221 1122222333333333221 111
Q ss_pred cCCCccHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010405 168 KCIKLDSILCAALIDMYAKCGSIDLAMQVFHS-YGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAV 246 (511)
Q Consensus 168 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 246 (511)
..++.||..+-.+|...+.+.-|.-.--. +..+| -...++..|-..|.+++-+.+++.-... -+.....|+-|
T Consensus 196 ---Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvhad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTEL 269 (624)
T 3lvg_A 196 ---ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTEL 269 (624)
T ss_dssp ---CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHH
T ss_pred ---cCChhHHHHHHHHHhCchHHHHHHHhcchhcccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHH
Confidence 12344555555555555554444322111 11111 1112333455566666666666554421 13344555555
Q ss_pred HHHHhccCCHHHHHHHHHHchhhcCCC------CCHhHHHHHHHHHHHcCCHHHHH
Q 010405 247 LSACSHLGWVEKGFYYFHSMFDVHGIK------PELDHYACMVDLLGRAGLLEEAE 296 (511)
Q Consensus 247 l~~~~~~g~~~~a~~~~~~~~~~~~~~------p~~~~~~~li~~~~~~g~~~~A~ 296 (511)
.-.|++- .+++..+.++....+-+++ -....|.-++-.|..-..++.|.
T Consensus 270 aILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 270 AILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 5555543 2333333333332211221 12334666666666666666554
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.13 E-value=0.078 Score=42.76 Aligned_cols=87 Identities=11% Similarity=-0.053 Sum_probs=54.5
Q ss_pred HHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCchhHHHH
Q 010405 257 EKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAG---LLEEAENFIASM-PMK-P--DNVIWGTLLGACRVHRNAEMGQR 329 (511)
Q Consensus 257 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~ 329 (511)
..+.+-|.+..+ .+ +++..+.-.+..++.+.+ +.+++..++++. ... | +...+..|.-++.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~-~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKA-AG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHH-TT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHc-cC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344444444433 22 245555555666666665 444666666655 222 3 23345566677899999999999
Q ss_pred HHHHHhhcCCCCchhH
Q 010405 330 IGNMLIESDQNHDGRY 345 (511)
Q Consensus 330 ~~~~~~~~~p~~~~~~ 345 (511)
.++.+++.+|++..+.
T Consensus 93 y~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAK 108 (152)
T ss_dssp HHHHHHHHCTTCHHHH
T ss_pred HHHHHHhcCCCCHHHH
Confidence 9999999999875443
No 229
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.04 E-value=3.5 Score=41.89 Aligned_cols=310 Identities=10% Similarity=0.008 Sum_probs=166.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCChh---HHHHHHHHHHHcCChHHHHHHHccCCC-CC-hhHHHHHHHHHHhcCC
Q 010405 14 KNSLIQFYSVCGRVRDARWVFDESDDLDVV---SWNSMINGYVRNGEILEGLKLFDKMPQ-RN-DVSWNSILGGLVRFGS 88 (511)
Q Consensus 14 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~-~~-~~~~~~li~~~~~~g~ 88 (511)
|.....++ +.|+++.+..+-..+..-... .|..+...+ ......+...++++-.. |- ...-+.-+..+.+.++
T Consensus 10 ~~~a~~a~-~~~~~~~~~~l~~~l~~~pL~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~ 87 (618)
T 1qsa_A 10 YAQIKQAW-DNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDL-MNQPAVTVTNFVRANPTLPPARTLQSRFVNELARRED 87 (618)
T ss_dssp HHHHHHHH-HTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTG-GGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHH-HCCCHHHHHHHHHhhcCCCcHHHHHHHHHHhCc-ccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCC
Confidence 44444444 568888888887776432222 343333322 22356677777666654 21 2233455667778899
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHH--HHHHHHHHH
Q 010405 89 VDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDY--GNWVYSYIQ 166 (511)
Q Consensus 89 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~--a~~~~~~~~ 166 (511)
+.....++.. +..+...-.....+....|+..+|......+-..| ......+..++..+...|.+.. ..+=+..+.
T Consensus 88 w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al 165 (618)
T 1qsa_A 88 WRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYLERIRLAM 165 (618)
T ss_dssp HHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 9999997776 43344444456677788899888888777776555 3345567777777776665432 222222233
Q ss_pred HcC-----------CCccH-HHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeee---hHHHHHHHHHcCChHHHHHHHHHH
Q 010405 167 KKC-----------IKLDS-ILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSA---YTSAIFGLAMNGHSIEAFELFENM 231 (511)
Q Consensus 167 ~~~-----------~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m 231 (511)
..| ++++. .....++..+.+- ..+....... .++... +...+.-+++ .+.+.|...+...
T Consensus 166 ~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p---~~~~~~~~~~-~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~ 240 (618)
T 1qsa_A 166 KAGNTGLVTVLAGQMPADYQTIASAIISLANNP---NTVLTFARTT-GATDFTRQMAAVAFASVAR-QDAENARLMIPSL 240 (618)
T ss_dssp HTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCG---GGHHHHHHHS-CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhCh---HhHHHHHhcc-CCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhh
Confidence 322 11111 1112222222221 1122222221 111111 1111222333 3778899999888
Q ss_pred HhCCCCCCHHHH----HHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCC-
Q 010405 232 KSKGISPDSISY----IAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMPMKP- 306 (511)
Q Consensus 232 ~~~g~~p~~~t~----~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p- 306 (511)
.... ..+.... ..+.......+...++...+..... ..++.....-.+..-.+.|+++.|...|+.|+..+
T Consensus 241 ~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~ 316 (618)
T 1qsa_A 241 AQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAK 316 (618)
T ss_dssp HHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGG
T ss_pred hhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHHHHHHHHHcccccc
Confidence 6533 2233222 2223233444535566666666543 22333334444445557799999999999996432
Q ss_pred CHHHH-HHHHHHHHhcCchhHHHHHHHHHhh
Q 010405 307 DNVIW-GTLLGACRVHRNAEMGQRIGNMLIE 336 (511)
Q Consensus 307 ~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~ 336 (511)
+..-| -=+..+....|+.++|..+|+.+..
T Consensus 317 ~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 317 EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 22222 1234566778999999999999875
No 230
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.91 E-value=0.0057 Score=58.83 Aligned_cols=208 Identities=10% Similarity=0.016 Sum_probs=146.8
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhcCC--CCChhHHHHHHHHHHHcCChHHHHHHHccCCCCChhHHHHHHHHHHhc
Q 010405 9 YDVFVKNSLIQFYSVCGRVRDARWVFDESD--DLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRF 86 (511)
Q Consensus 9 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~ 86 (511)
-|+..|..+|....+.|.+++-.+.+.-.. .+++..=+.|+-+|++.++..+-.+++. .||..-...+.+-|...
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e 157 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDE 157 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHS
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHc
Confidence 367788899999999999999988886444 2466667789999999999765433222 37777778888888889
Q ss_pred CCHHHHHHHHhhCCC------------------------CChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHH
Q 010405 87 GSVDDACRVFNQMPK------------------------RSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142 (511)
Q Consensus 87 g~~~~A~~~~~~~~~------------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 142 (511)
|.++.|.-+|..+.. .++.+|-.+-.+|...+++.-|.-.--.+.- .|| ..
T Consensus 158 ~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL 232 (624)
T 3lvg_A 158 KMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--EL 232 (624)
T ss_dssp CCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CC
T ss_pred cCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HH
Confidence 999998888887751 3667899999999999998887655444432 222 23
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC----C-------CeeehHHH
Q 010405 143 VSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD----K-------DVSAYTSA 211 (511)
Q Consensus 143 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~-------~~~~~~~l 211 (511)
..++.-|...|.+++-+.+++...... ......++-|.-.|+|- ++++..+.++.... | ....|.-+
T Consensus 233 ~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~El 310 (624)
T 3lvg_A 233 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAEL 310 (624)
T ss_dssp SGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHH
Confidence 345666778888888888777766321 34567788888888874 44554444443322 2 44568888
Q ss_pred HHHHHHcCChHHHHH
Q 010405 212 IFGLAMNGHSIEAFE 226 (511)
Q Consensus 212 i~~~~~~g~~~~A~~ 226 (511)
+-.|..-.+++.|..
T Consensus 311 vfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 311 VFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHHTCHHHHHH
T ss_pred HHHHhcchhHHHHHH
Confidence 888888888876644
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.80 E-value=0.22 Score=38.64 Aligned_cols=65 Identities=9% Similarity=-0.069 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHHhcCchhH---HHHHHHHHhhcC-C-CCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 306 PDNVIWGTLLGACRVHRNAEM---GQRIGNMLIESD-Q-NHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 306 p~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
|+..+--.+..++.+..+... ++.+++.+.+.. | ........|+-++.+.|++++|.+..+.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444444444444444333 555555555543 3 2233444555566666666666666665554
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.08 E-value=0.21 Score=44.98 Aligned_cols=114 Identities=12% Similarity=0.076 Sum_probs=63.6
Q ss_pred cCCHHHHHHHHhhCCCCCh--hHHHHHHHH-HHHC--CC------hhHHHHHHHHHHHCCCCCC---HhHHHHHHHHHHh
Q 010405 86 FGSVDDACRVFNQMPKRSL--VSWVVLISG-FAQN--GR------PKEALALFREMQSLDLEPN---SAILVSLLSACAQ 151 (511)
Q Consensus 86 ~g~~~~A~~~~~~~~~~~~--~~~~~li~~-~~~~--g~------~~~A~~~~~~m~~~~~~p~---~~t~~~ll~~~~~ 151 (511)
.++..+-...+.+....++ ..|..++.+ ++.. |. ..+|..++++..+. .|+ ...|..+...|..
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHh
Confidence 4444555556666654444 356666543 3332 32 24555556665553 344 4566666666666
Q ss_pred c-----CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc-CCHHHHHHHHHhcC
Q 010405 152 L-----GALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKC-GSIDLAMQVFHSYG 201 (511)
Q Consensus 152 ~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~-g~~~~A~~~~~~~~ 201 (511)
. |+.++|.+.|++.++.+..-+..++....+.++.. |+.++|.+.+++..
T Consensus 212 vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL 267 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRAL 267 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3 67777777777777664322355555566666553 66666666555544
No 233
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.99 E-value=0.53 Score=35.09 Aligned_cols=64 Identities=13% Similarity=-0.085 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHCCChhHHHHHHHHHHHCC------CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010405 105 VSWVVLISGFAQNGRPKEALALFREMQSLD------LEPNSAILVSLLSACAQLGALDYGNWVYSYIQKK 168 (511)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 168 (511)
.-+..|...+.+.|++..|...|+...+.- -.+....+..+..++.+.|+++.|...++.+.+.
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 345567777777777777777777665421 1234456666777777777777777777777665
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.35 E-value=0.18 Score=52.17 Aligned_cols=54 Identities=13% Similarity=0.009 Sum_probs=50.3
Q ss_pred HHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 010405 316 GACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMR 369 (511)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 369 (511)
.-|...|+++.|+++.+++...-|.+..+|..|+.+|...|+|+.|+-.+..+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 336788999999999999999999999999999999999999999999998875
No 235
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.30 E-value=2.3 Score=33.20 Aligned_cols=59 Identities=12% Similarity=0.045 Sum_probs=28.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchh
Q 010405 209 TSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD 268 (511)
Q Consensus 209 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 268 (511)
+..+..+...|.-++-.+++..+.. +.+|++.....+..||.+.|+..++.+++.++-+
T Consensus 95 d~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 95 NKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3344444555555555555555322 2344445555555555555555555555555544
No 236
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.57 E-value=3.1 Score=32.78 Aligned_cols=66 Identities=8% Similarity=-0.088 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHHHHHhcCc---hhHHHHHHHHHhhcCCCC-chhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 305 KPDNVIWGTLLGACRVHRN---AEMGQRIGNMLIESDQNH-DGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 305 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
.|+..+--.+..++.+..+ ..+++.+++.+....|.. ......|+-++.+.|++++|.+..+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3455544444555544443 446777777777766643 34555777778888888888888877765
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.03 E-value=1 Score=34.85 Aligned_cols=88 Identities=11% Similarity=-0.052 Sum_probs=51.8
Q ss_pred HHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHH---HHHHHHhC-CCC-C-CHH-HHHHHHHHHHhcCchhHHHH
Q 010405 257 EKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEE---AENFIASM-PMK-P-DNV-IWGTLLGACRVHRNAEMGQR 329 (511)
Q Consensus 257 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~~-~~~-p-~~~-~~~~ll~~~~~~g~~~~a~~ 329 (511)
..+.+-|..... .|. |+..+--.+..++.+.....+ ++.++++. ... | +.. ....|.-++.+.|++++|.+
T Consensus 18 ~~~~~~y~~e~~-~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKA-AGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHH-HSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhc-cCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 334444444433 222 555555555556666665554 56666655 222 3 122 33345566888899999999
Q ss_pred HHHHHhhcCCCCchhHH
Q 010405 330 IGNMLIESDQNHDGRYI 346 (511)
Q Consensus 330 ~~~~~~~~~p~~~~~~~ 346 (511)
.++.+++.+|++..+..
T Consensus 96 ~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 96 YVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHhCCCCHHHHH
Confidence 99999999998755443
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.82 E-value=0.53 Score=37.54 Aligned_cols=53 Identities=6% Similarity=-0.028 Sum_probs=38.9
Q ss_pred cCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010405 321 HRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKI 373 (511)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 373 (511)
.+|+++|.++|+.++.....-+..|...+..-.++|+.+.|.+++.+....+.
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 37788888888888775443355666777777788888888888887776554
No 239
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=91.63 E-value=2 Score=31.26 Aligned_cols=59 Identities=15% Similarity=0.223 Sum_probs=41.9
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHH
Q 010405 81 GGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142 (511)
Q Consensus 81 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 142 (511)
..+...|++++|..+.+.+.-||...|.+|... +.|..+++..-+.++..+| .|....|
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTCC-CHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 456678888888888888888888888776554 6677777777776776665 4443333
No 240
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=91.41 E-value=1.9 Score=31.35 Aligned_cols=59 Identities=17% Similarity=0.173 Sum_probs=44.1
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHH
Q 010405 81 GGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAIL 142 (511)
Q Consensus 81 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 142 (511)
..+...|++++|..+.+.+.-||...|.+|... +.|..+++..-+.++..+| .|....|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHHTCS-SHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 456678999999999888888898888777554 7788888887777777766 4444443
No 241
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.23 E-value=2.3 Score=33.92 Aligned_cols=95 Identities=12% Similarity=0.272 Sum_probs=51.0
Q ss_pred CChhHHHHHHHHHHHCCCh------hHHHHHHHHHHHCCCCCCHh----HHHHHHH---HHHhcCCHHHHHHHHHHHHHc
Q 010405 102 RSLVSWVVLISGFAQNGRP------KEALALFREMQSLDLEPNSA----ILVSLLS---ACAQLGALDYGNWVYSYIQKK 168 (511)
Q Consensus 102 ~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~p~~~----t~~~ll~---~~~~~~~~~~a~~~~~~~~~~ 168 (511)
.|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|.-+.- .+...++.+.|.++|+.+++.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4667777777777777887 7777777777654 555431 1111110 112235666666666666554
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010405 169 CIKLDSILCAALIDMYAKCGSIDLAMQVFH 198 (511)
Q Consensus 169 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 198 (511)
+-.- ..+|......-.+.|++..|++++.
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg 118 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQ 118 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHH
Confidence 2221 4444444444444555555555444
No 242
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.98 E-value=5.1 Score=42.48 Aligned_cols=247 Identities=9% Similarity=-0.039 Sum_probs=130.4
Q ss_pred HhcCCHHHHHHHHhhCCC----CCh--hHHHHHHHHHHHCCChhHHHHHHHHHHHCCC--C-----CCHhHHHH--HHHH
Q 010405 84 VRFGSVDDACRVFNQMPK----RSL--VSWVVLISGFAQNGRPKEALALFREMQSLDL--E-----PNSAILVS--LLSA 148 (511)
Q Consensus 84 ~~~g~~~~A~~~~~~~~~----~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~-----p~~~t~~~--ll~~ 148 (511)
...|+.+++..+++.-.. .+. ..-..+.-+.+..|..+++++++.......- . +....-.. |..+
T Consensus 385 Ih~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla 464 (963)
T 4ady_A 385 IHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA 464 (963)
T ss_dssp HTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred hccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence 345677777777776543 122 2334455566677777778887766554311 0 11111122 2222
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCccH--HHHHHHHHHHHhcCCHHHHHHHHHhcCCC-C--eeehHHHHHHHHHcCChHH
Q 010405 149 CAQLGALDYGNWVYSYIQKKCIKLDS--ILCAALIDMYAKCGSIDLAMQVFHSYGDK-D--VSAYTSAIFGLAMNGHSIE 223 (511)
Q Consensus 149 ~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~y~~~g~~~~A~~~~~~~~~~-~--~~~~~~li~~~~~~g~~~~ 223 (511)
+...++ +++...+..++...- ... ...-+|...|...|+-+-...++..+.+. + +.-.-++.-++...|+.+.
T Consensus 465 ~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 465 AMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp STTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred hcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence 233333 344555555544321 111 22234455566778877777776654331 1 2222334445557788888
Q ss_pred HHHHHHHHHhCCCCCCHHHHH---HHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 010405 224 AFELFENMKSKGISPDSISYI---AVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300 (511)
Q Consensus 224 A~~~~~~m~~~g~~p~~~t~~---~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 300 (511)
+..+.+.+.... .| ..-|. ++.-+|+..|+.....+++..+.. ....++.....+.-++...|+.+.+.++++
T Consensus 543 ~~~li~~L~~~~-dp-~vRygaa~alglAyaGTGn~~aIq~LL~~~~~--d~~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 543 ADDLITKMLASD-ES-LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS--DSNDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GHHHHHHHHHCS-CH-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHhCC-CH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc--CCcHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 888888887631 22 22333 344578888998888888888876 222333333334444444676666666666
Q ss_pred hCC--CCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHhh
Q 010405 301 SMP--MKPDNVIWGTLLGACRVHRNA-EMGQRIGNMLIE 336 (511)
Q Consensus 301 ~~~--~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~ 336 (511)
.+. ..|.+..-.++.-+....|+. .++..++..+..
T Consensus 619 ~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 619 LLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 542 234444333444444444443 456667666654
No 243
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=90.85 E-value=6.7 Score=33.16 Aligned_cols=183 Identities=9% Similarity=0.003 Sum_probs=103.3
Q ss_pred ChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChh
Q 010405 26 RVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLV 105 (511)
Q Consensus 26 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 105 (511)
+.+....+.+.+..+|...-...+..+.+.|..+..-.+.+.+..+|..+-...+.++.+.++.+....+.+.+..+|..
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~ 96 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGW 96 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHH
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHH
Confidence 33334444455556666666666777777776555555555556677777667777777777655555555556666666
Q ss_pred HHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 010405 106 SWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYA 185 (511)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 185 (511)
.-...+.++.+.|+.+ +...+..+.. .|+...-...+.++...+..+ +...+..+.+ .++..+-...+.+..
T Consensus 97 vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~ 168 (211)
T 3ltm_A 97 VRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALG 168 (211)
T ss_dssp HHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 6666666666666643 3444444443 356666666677777776643 3333333332 345566666667777
Q ss_pred hcCCHHHHHHHHHhc-CCCCeeehHHHHHHHHH
Q 010405 186 KCGSIDLAMQVFHSY-GDKDVSAYTSAIFGLAM 217 (511)
Q Consensus 186 ~~g~~~~A~~~~~~~-~~~~~~~~~~li~~~~~ 217 (511)
+.+..+ +...+..+ .+++...-...+.++..
T Consensus 169 ~~~~~~-~~~~L~~~l~d~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 169 EIGGER-VRAAMEKLAETGTGFARKVAVNYLET 200 (211)
T ss_dssp HHCSHH-HHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred HhCchh-HHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 766633 33333333 33444444444444443
No 244
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=90.61 E-value=7.1 Score=33.01 Aligned_cols=187 Identities=11% Similarity=-0.002 Sum_probs=116.9
Q ss_pred CChHHHHHHHccCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCC
Q 010405 56 GEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDL 135 (511)
Q Consensus 56 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 135 (511)
++.+....+.+.+..+|..+-...+..+.+.|..+....+.+.+..+|...-...+.++.+.+..+ +...+..+..
T Consensus 16 ~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~--- 91 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK--- 91 (211)
T ss_dssp CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---
T ss_pred cCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---
Confidence 344444455555666777777777888888887555556666666777766666677777777643 4444444443
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHH
Q 010405 136 EPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGL 215 (511)
Q Consensus 136 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 215 (511)
.+|...-...+.++...++.+.. ..+..+.+ .++..+-...+.++.+.|..+....+.+.+.+++...-...+.++
T Consensus 92 ~~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL 167 (211)
T 3ltm_A 92 DEDGWVRQSAAVALGQIGDERAV-EPLIKALK---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADAL 167 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcHHHH-HHHHHHHh---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 46777777778888888875433 33333332 456677777778888877765444445555556766666677777
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 010405 216 AMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254 (511)
Q Consensus 216 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 254 (511)
.+.+. .++...+.++.+. ++...-...+.++...+
T Consensus 168 ~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 168 GEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC--
T ss_pred HHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHhcC
Confidence 77776 4667777776653 35555555555555444
No 245
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.40 E-value=11 Score=40.08 Aligned_cols=256 Identities=15% Similarity=0.116 Sum_probs=141.9
Q ss_pred HHHHcCChHHHHHHHccCCC----CChhH--HHHHHHHHHhcCCHHHHHHHHhhCC-CCC----------hhHHHHHHHH
Q 010405 51 GYVRNGEILEGLKLFDKMPQ----RNDVS--WNSILGGLVRFGSVDDACRVFNQMP-KRS----------LVSWVVLISG 113 (511)
Q Consensus 51 ~~~~~g~~~~A~~~~~~m~~----~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~-~~~----------~~~~~~li~~ 113 (511)
+....|+.++++.++..... .+..+ -..+.-+...+|.-+++..++.... ..+ +..-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 46678888999999988765 22222 2223334455665556766555432 222 1223344444
Q ss_pred HHHCCCh-hHHHHHHHHHHHCCCCCCH--hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH--HHhcC
Q 010405 114 FAQNGRP-KEALALFREMQSLDLEPNS--AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDM--YAKCG 188 (511)
Q Consensus 114 ~~~~g~~-~~A~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--y~~~g 188 (511)
.+-.|.- +++.+.+..+.... .+.. .+-.++...+...|+.+-...++..+.+.. +..+...+..+ +.-.|
T Consensus 463 la~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred HHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence 4444543 46667776666532 1111 122233344556788888888888777642 22333333333 44678
Q ss_pred CHHHHHHHHHhcCC-CCe-eehH---HHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010405 189 SIDLAMQVFHSYGD-KDV-SAYT---SAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYF 263 (511)
Q Consensus 189 ~~~~A~~~~~~~~~-~~~-~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 263 (511)
+.+.+..+.+.+.. .+. +-|. ++..+|+-.|+.....+++..+.... ..+......+.-++...|+.+.+.+++
T Consensus 539 ~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 539 RQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 88888777777653 333 2343 33456777888766666888887642 222222222222444566666677777
Q ss_pred HHchhhcCCCCCHhHHHHHHHHHHHcCCH-HHHHHHHHhCCCCCCHHHHHH
Q 010405 264 HSMFDVHGIKPELDHYACMVDLLGRAGLL-EEAENFIASMPMKPDNVIWGT 313 (511)
Q Consensus 264 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~p~~~~~~~ 313 (511)
..+.+ ...|.+..-.++.-+....|.. .+|.+++..+...+|..+-..
T Consensus 618 ~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~ 666 (963)
T 4ady_A 618 QLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQA 666 (963)
T ss_dssp TTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHH
Confidence 76665 2345555555555555555554 577888888754566554433
No 246
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=89.07 E-value=3.3 Score=30.19 Aligned_cols=86 Identities=9% Similarity=0.071 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHh
Q 010405 154 ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKS 233 (511)
Q Consensus 154 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 233 (511)
.-++|.-|-+.+...+. ...+--+-+..+...|++++|..+.+...-||.++|-++-. .+.|..+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45677777776666553 33333334455677899999999999888899998887755 466777788877777766
Q ss_pred CCCCCCHHHHH
Q 010405 234 KGISPDSISYI 244 (511)
Q Consensus 234 ~g~~p~~~t~~ 244 (511)
+| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 44444443
No 247
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.81 E-value=14 Score=33.92 Aligned_cols=182 Identities=11% Similarity=0.030 Sum_probs=108.1
Q ss_pred HHHHHcCCh---HHHHHHHccCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHH
Q 010405 50 NGYVRNGEI---LEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALAL 126 (511)
Q Consensus 50 ~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 126 (511)
..-...|++ =+|.+. |.++..-|.+.+++++|.+++-. -...+.+.|+...|-++
T Consensus 20 ~~~I~~G~y~~~YEAHQ~-----------~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL 77 (336)
T 3lpz_A 20 QRRIAEGQPEEQYEAAQE-----------TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDL 77 (336)
T ss_dssp HHHHHHCCHHHHHHHHHH-----------HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHH
T ss_pred HHHHhCCCCccccHHHHH-----------HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHH
Confidence 344566777 666654 55677788899999999887643 23445566776655544
Q ss_pred H----HHHHHCCCCCCHhHHHHHHHHHHhcCCHHH-HHHHHHHHH----HcC--CCccHHHHHHHHHHHHhcCCHHHHHH
Q 010405 127 F----REMQSLDLEPNSAILVSLLSACAQLGALDY-GNWVYSYIQ----KKC--IKLDSILCAALIDMYAKCGSIDLAMQ 195 (511)
Q Consensus 127 ~----~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~-a~~~~~~~~----~~~--~~~~~~~~~~li~~y~~~g~~~~A~~ 195 (511)
- +-+.+.++++|......|+..+.....-+- =..+.+.++ +.| ..-|+.....+...|.+.+++.+|+.
T Consensus 78 ~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~ 157 (336)
T 3lpz_A 78 AVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEK 157 (336)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 3 555566788888887777777766553221 122333333 233 34577888899999999999999998
Q ss_pred HHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchh
Q 010405 196 VFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD 268 (511)
Q Consensus 196 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 268 (511)
.|-.-.++.+..+..|+.-+...+... .++...-.+++. |...+++..|..+++...+
T Consensus 158 H~ilg~~~s~~~~a~mL~ew~~~~~~~--------------e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 158 HLVLGTKESPEVLARMEYEWYKQDESH--------------TAPLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHTTSCTTHHHHHHHHHHHHHHTSCGG--------------GHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHhcCCc--------------cHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 874222222244444443333222211 112222333333 4556788888877666554
No 248
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=88.77 E-value=16 Score=34.54 Aligned_cols=288 Identities=11% Similarity=0.028 Sum_probs=147.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHccCCC--------CChhHHHHHHHHHHhc-CCHHHHHHHHhhCCC---CChhHH-----
Q 010405 45 WNSMINGYVRNGEILEGLKLFDKMPQ--------RNDVSWNSILGGLVRF-GSVDDACRVFNQMPK---RSLVSW----- 107 (511)
Q Consensus 45 ~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~---~~~~~~----- 107 (511)
...|...|.+.|+.++..+++...+. ........|++.+... +..+.-.++..+..+ .+-.+|
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l 101 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666667777766666666543 1233445566666553 223333333333221 111222
Q ss_pred -HHHHHHHHHCCChhHHHHHHHHHHHCCCCCCH-----hHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCccHHHHHH
Q 010405 108 -VVLISGFAQNGRPKEALALFREMQSLDLEPNS-----AILVSLLSACAQLGALDYGNWVYSYIQKK--CIKLDSILCAA 179 (511)
Q Consensus 108 -~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 179 (511)
.-++..|...|++.+|++++.++.+.=-+.|. ..+..-+..|...+++.++...+...... .+.+++.+...
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 25788899999999999998888763112222 33455566778889999998888777553 23233333222
Q ss_pred H----HHHHH-hcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 010405 180 L----IDMYA-KCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLG 254 (511)
Q Consensus 180 l----i~~y~-~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 254 (511)
+ .-++. ..+++..|...|-+.. .+|...|.. ++. +...|..|. +.....
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf-----------~~f~~~~~~-~~~-------------~~lkYlvL~-aLl~~~ 235 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEAF-----------EGFDSVDSV-KAL-------------TSLKYMLLC-KIMLGQ 235 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHH-----------HHHTTTCHH-HHH-------------HHHHHHHHH-HHHTTC
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHHH-----------hcccccccH-HHH-------------HHHHHHHHH-HHHcCC
Confidence 1 22344 5677777766665320 111111110 001 122332222 222222
Q ss_pred CHHHHHHHHH-HchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCCHHH---HHHHHHHHHhcCchhHHH
Q 010405 255 WVEKGFYYFH-SMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASMP--MKPDNVI---WGTLLGACRVHRNAEMGQ 328 (511)
Q Consensus 255 ~~~~a~~~~~-~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~---~~~ll~~~~~~g~~~~a~ 328 (511)
..+-..++. .....+ ..|....+..++.+| +.+++.+...+++... +..|... +..|..... .
T Consensus 236 -r~el~~~l~~~~~~~~-~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir--------~ 304 (394)
T 3txn_A 236 -SDDVNQLVSGKLAITY-SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTML--------E 304 (394)
T ss_dssp -GGGHHHHHHSHHHHTT-CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHH--------H
T ss_pred -HHHHHHHhcccccccc-CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH--------H
Confidence 111112211 111112 345565666676665 4567877777777652 3445543 222222221 1
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010405 329 RIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKI 373 (511)
Q Consensus 329 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 373 (511)
..+.++ ..|-....+..++..+.- ..++++..+-+|...|.
T Consensus 305 ~~L~~i--~~pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 305 QNLCRI--IEPYSRVQVAHVAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp HHHHHH--HTTCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred HHHHHH--hHhhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 222222 245555666666665543 67899999999988765
No 249
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=88.66 E-value=9.7 Score=31.82 Aligned_cols=149 Identities=9% Similarity=0.023 Sum_probs=70.2
Q ss_pred HhcCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHH
Q 010405 34 FDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISG 113 (511)
Q Consensus 34 f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 113 (511)
++.+..+|...-...+.++.+.+..+....+.+.+..+|..+-...+..+.+.|..+....+.+.+..++...-...+.+
T Consensus 20 i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~a 99 (201)
T 3ltj_A 20 IKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVA 99 (201)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 33444455555555555555555544444444444445555555555555555554444444444445555554455555
Q ss_pred HHHCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 010405 114 FAQNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSI 190 (511)
Q Consensus 114 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 190 (511)
+.+.++.+ +...+..+.. .++...-...+.++...++.+ +...+..+.+ .++..+-...+.++.+.|..
T Consensus 100 L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~~ 168 (201)
T 3ltj_A 100 LGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGGE 168 (201)
T ss_dssp HHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCSH
T ss_pred HHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCch
Confidence 55555433 2333333332 335445555555555555432 2222222222 23444555555555555543
No 250
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=88.61 E-value=14 Score=33.63 Aligned_cols=182 Identities=12% Similarity=0.060 Sum_probs=110.2
Q ss_pred HHHHHcCChHHHHHHHccCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHH---
Q 010405 50 NGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALAL--- 126 (511)
Q Consensus 50 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~--- 126 (511)
..-...|++=+|.+. |.++..-|.+.+++++|.+++.. -...+.+.|+...|-++
T Consensus 21 ~~~I~~G~yYEAhQ~-----------~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~l 78 (312)
T 2wpv_A 21 ENKIKAGDYYEAHQT-----------LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFY 78 (312)
T ss_dssp HHHHHHTCHHHHHHH-----------HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhhccChHHHHHH-----------HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHH
Confidence 344556777777765 56778888889999999888643 23445667776665553
Q ss_pred -HHHHHHCCCCCCHhHHHHHHHHHHhcCCHH-HHHHHHHHHH----HcC--CCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010405 127 -FREMQSLDLEPNSAILVSLLSACAQLGALD-YGNWVYSYIQ----KKC--IKLDSILCAALIDMYAKCGSIDLAMQVFH 198 (511)
Q Consensus 127 -~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 198 (511)
.+-..+.+++++......++..+.....-+ .=..+.+.++ +.| ...++.....+...|.+.|++.+|+..|-
T Consensus 79 lvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 79 LLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 455566788888888888887776543211 1123333333 332 23478889999999999999999998776
Q ss_pred hcCCCCeeehHHHHHHHHHc---CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchh
Q 010405 199 SYGDKDVSAYTSAIFGLAMN---GHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD 268 (511)
Q Consensus 199 ~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 268 (511)
.-...|...+..++.-+... |...++ +...-.+++ -|...|++..|..+|+...+
T Consensus 159 ~~~~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 159 LGTHDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSRLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred hCCCccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 32222344444443333322 222221 111222233 24456888888888877654
No 251
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=88.10 E-value=3 Score=30.31 Aligned_cols=86 Identities=9% Similarity=0.035 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHh
Q 010405 154 ALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKS 233 (511)
Q Consensus 154 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 233 (511)
.-++|.-|-+.+...+. ...+--+-+..+...|++++|..+.+...-||.++|-++-. .+.|..+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45677777776666543 33333334455677899999999999888899998877654 467888888888877777
Q ss_pred CCCCCCHHHHH
Q 010405 234 KGISPDSISYI 244 (511)
Q Consensus 234 ~g~~p~~~t~~ 244 (511)
+| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 44444443
No 252
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.80 E-value=1.4 Score=42.11 Aligned_cols=68 Identities=12% Similarity=-0.013 Sum_probs=56.1
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh-----CCCccCCce
Q 010405 312 GTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK-----RKIKRAPGC 379 (511)
Q Consensus 312 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~ 379 (511)
..++.++...|+.+++...++.+...+|-+...+..|+.+|.+.|+..+|.+.|+...+ .|+.|.+..
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 44566778889999999999999999998888999999999999999999999887654 477766553
No 253
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=87.66 E-value=4.2 Score=31.63 Aligned_cols=65 Identities=8% Similarity=-0.090 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHHHhcC---chhHHHHHHHHHhhcCCC-CchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 306 PDNVIWGTLLGACRVHR---NAEMGQRIGNMLIESDQN-HDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 306 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
|+..+--.+..++.+.. +..+++.+++.+.+..|. ....+..|+-++.+.|++++|.+..+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44444333444444333 344566777776665553 234556677777777777777777776664
No 254
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.55 E-value=2.4 Score=31.07 Aligned_cols=62 Identities=16% Similarity=0.206 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHH
Q 010405 221 SIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVD 284 (511)
Q Consensus 221 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 284 (511)
.-+..+-++.+....+-|+.....+.|.||.+.+++..|.++|+.++.+.|- ....|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~--~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--chhhHHHHHH
Confidence 3466677777777888999999999999999999999999999999875443 3456777664
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=86.96 E-value=3.4 Score=33.56 Aligned_cols=26 Identities=8% Similarity=0.019 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCC
Q 010405 278 HYACMVDLLGRAGLLEEAENFIASMP 303 (511)
Q Consensus 278 ~~~~li~~~~~~g~~~~A~~~~~~~~ 303 (511)
.---+...|.+.|++++|+.+++.+|
T Consensus 124 lkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 124 VKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 33345556666677777777666664
No 256
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=86.84 E-value=13 Score=31.09 Aligned_cols=176 Identities=11% Similarity=0.029 Sum_probs=93.0
Q ss_pred HHccCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHH
Q 010405 64 LFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSAILV 143 (511)
Q Consensus 64 ~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 143 (511)
+++.+..+|..+-...+..+.+.+..+....+.+.+..++...-...+.++.+.|..+ +...+..+.. .++...-.
T Consensus 19 ~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~ 94 (201)
T 3ltj_A 19 YIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQ 94 (201)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHH
Confidence 3344445666666666666666666444455555555566655555555666666543 3333434433 35666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHH
Q 010405 144 SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIE 223 (511)
Q Consensus 144 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 223 (511)
..+.++...++.+....+. .+.+ .++..+-...+.+..+.|+.+....+.+.+.+++...-...+.++...|. .+
T Consensus 95 ~a~~aL~~~~~~~~~~~L~-~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~ 169 (201)
T 3ltj_A 95 SAAVALGQIGDERAVEPLI-KALK---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ER 169 (201)
T ss_dssp HHHHHHHHHCCGGGHHHHH-HHTT---CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HH
T ss_pred HHHHHHHHhCcHHHHHHHH-HHHc---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hh
Confidence 6666777666654333322 2222 34555666666666666664443344444444555555555666666655 35
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 010405 224 AFELFENMKSKGISPDSISYIAVLSACS 251 (511)
Q Consensus 224 A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 251 (511)
+...+..+... ++...-...+.++.
T Consensus 170 ~~~~L~~~l~d---~~~~vr~~A~~aL~ 194 (201)
T 3ltj_A 170 VRAAMEKLAET---GTGFARKVAVNYLE 194 (201)
T ss_dssp HHHHHHHHHHH---CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 55555555542 34433333444443
No 257
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.35 E-value=20 Score=32.93 Aligned_cols=168 Identities=15% Similarity=0.104 Sum_probs=105.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHH----HHHHhCCCCCCHHHHHHHHHHHh
Q 010405 176 LCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELF----ENMKSKGISPDSISYIAVLSACS 251 (511)
Q Consensus 176 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~ 251 (511)
.+.++..=|.+.+++++|++++..- ...+.+.|+...|-++- +-..+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 5556667789999999999876532 34566778876666554 44456788889888888887776
Q ss_pred ccCCHH-HHHHHHHHchh---hcC--CCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchh
Q 010405 252 HLGWVE-KGFYYFHSMFD---VHG--IKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAE 325 (511)
Q Consensus 252 ~~g~~~-~a~~~~~~~~~---~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 325 (511)
....-+ .=..+.+.+.+ ..| ..-++.....+...|.+.+++.+|+..|= .+..+.+..+..++.-+...+.
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~-- 182 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE-- 182 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC--
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC--
Confidence 554321 11223333322 122 23457778889999999999999998884 3434444666555554443332
Q ss_pred HHHHHHHHHhhcCCCCchhHH-HHHHHHHHcCCchHHHHHHHHHHh
Q 010405 326 MGQRIGNMLIESDQNHDGRYI-LLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 326 ~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
|.....|. ..+--|.-.++...|..+++...+
T Consensus 183 -------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 -------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 22222222 334456777889999888776654
No 258
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.23 E-value=20 Score=39.56 Aligned_cols=122 Identities=4% Similarity=-0.154 Sum_probs=86.5
Q ss_pred HHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCC----------------
Q 010405 245 AVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM--PMKP---------------- 306 (511)
Q Consensus 245 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p---------------- 306 (511)
.++..+...+..+.+.++..-. +.++..--.+..+|...|++++|.+.|++. ++.+
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 4555666677777666654333 233444456778889999999999999887 2111
Q ss_pred -------CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcC-CCCc----hhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 307 -------DNVIWGTLLGACRVHRNAEMGQRIGNMLIESD-QNHD----GRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 307 -------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
-..-|..++..+.+++.++.+.++.+.+++.. +++. ..|..+...+...|++++|...+-.+....
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~ 968 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP 968 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH
Confidence 11235667777889999999999999998843 3332 256778889999999999999998776544
No 259
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=84.77 E-value=27 Score=36.21 Aligned_cols=51 Identities=16% Similarity=0.059 Sum_probs=32.6
Q ss_pred HhccCCHHHHHHHHHHchhhcCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 010405 250 CSHLGWVEKGFYYFHSMFDVHGIKP-ELDHYACMVDLLGRAGLLEEAENFIASMP 303 (511)
Q Consensus 250 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 303 (511)
|...|+++.|+.+-++... ..| +-.+|..|...|...|+++.|+-.++.+|
T Consensus 347 Ll~K~~~elAL~~Ak~AV~---~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTE---LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHh---cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4456667777766666654 233 35667777777777777777776666664
No 260
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=84.56 E-value=7.4 Score=31.59 Aligned_cols=113 Identities=10% Similarity=-0.004 Sum_probs=63.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC-------HhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC
Q 010405 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE-------LDHYACMVDLLGRAGLLEEAENFIASM-------PMKPD 307 (511)
Q Consensus 242 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-------~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~ 307 (511)
++..-+..+...|.++.|+-+.+.+....+.+|+ ..++..+.+++...|++..|...|++. +..|+
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3444566677778888887777765543333333 134566677778888888877777663 11121
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHH
Q 010405 308 NVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTM 368 (511)
Q Consensus 308 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 368 (511)
. ...+ .. ...... -.. .+.+...-+-+..+|.+.|++++|+.+++.+
T Consensus 102 ~--~~~~-~~--~ss~p~--------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 102 V--RPST-GN--SASTPQ--------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ----------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred c--cccc-cc--cCCCcc--------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 1 1111 00 000000 000 1223356677899999999999999998755
No 261
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=83.34 E-value=8 Score=28.35 Aligned_cols=63 Identities=17% Similarity=0.246 Sum_probs=47.2
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 010405 119 RPKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182 (511)
Q Consensus 119 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 182 (511)
+.-+..+-++.+...++.|++....+.+.||.+.+++..|.++++-++... .....+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 344566667777777888999999999999999999999999998887653 333456666654
No 262
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=83.02 E-value=5.9 Score=37.64 Aligned_cols=55 Identities=13% Similarity=-0.016 Sum_probs=27.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 010405 145 LLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSY 200 (511)
Q Consensus 145 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 200 (511)
++.++...|+.+++...+..+.... +.+...+..||.+|.+.|+..+|++.|+..
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344444555555555544444432 334445555555555555555555555443
No 263
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=81.67 E-value=5.4 Score=30.96 Aligned_cols=70 Identities=17% Similarity=0.251 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 010405 223 EAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIASM 302 (511)
Q Consensus 223 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 302 (511)
+..+-++.+....+-|+.....+.|.+|.+.+++..|.++|+.++.+.| +....|..+++ +-..+++++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq---------ElkPtl~EL 139 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ---------ELRPTLNEL 139 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH---------HHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH---------HHhhHHHHh
Confidence 5666677777788999999999999999999999999999999987544 44556777764 444555555
Q ss_pred C
Q 010405 303 P 303 (511)
Q Consensus 303 ~ 303 (511)
+
T Consensus 140 G 140 (152)
T 2y69_E 140 G 140 (152)
T ss_dssp T
T ss_pred C
Confidence 4
No 264
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=81.30 E-value=55 Score=36.03 Aligned_cols=87 Identities=10% Similarity=-0.018 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC--eeehHHHHH
Q 010405 140 AILVSLLSACAQLGALDYGNWVYSYIQKKCIKLD----SILCAALIDMYAKCGSIDLAMQVFHSYGDKD--VSAYTSAIF 213 (511)
Q Consensus 140 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~--~~~~~~li~ 213 (511)
.-|..++..+.+.+..+.+.++-..+++...+.+ ...|..+...+...|++++|...+-.++... ......++.
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~ 979 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3466777778888888888887777766532222 1257778888888899999988887765432 245667788
Q ss_pred HHHHcCChHHHHH
Q 010405 214 GLAMNGHSIEAFE 226 (511)
Q Consensus 214 ~~~~~g~~~~A~~ 226 (511)
.++..|+.+.-+.
T Consensus 980 ~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 980 QLTKQGKINQLLN 992 (1139)
T ss_dssp HHHHHCCHHHHHH
T ss_pred HHHhCCChhhhhC
Confidence 8888887665443
No 265
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.15 E-value=44 Score=32.22 Aligned_cols=185 Identities=12% Similarity=0.082 Sum_probs=118.6
Q ss_pred CChhHHHHHHHHHHH-----CCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCccHHH--HHHHHHHHHhcCC
Q 010405 118 GRPKEALALFREMQS-----LDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKK-CIKLDSIL--CAALIDMYAKCGS 189 (511)
Q Consensus 118 g~~~~A~~~~~~m~~-----~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~--~~~li~~y~~~g~ 189 (511)
|++++|++.+..+.+ .+..........++..|...++++...+.+..+.+. |..+...+ .+.+++.......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 788999988766653 234456677888999999999999988877766553 33222221 1222333333333
Q ss_pred H--HHHHHHHHhcCC-CCeee---------hHHHHHHHHHcCChHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHhc
Q 010405 190 I--DLAMQVFHSYGD-KDVSA---------YTSAIFGLAMNGHSIEAFELFENMKSK--GISPD---SISYIAVLSACSH 252 (511)
Q Consensus 190 ~--~~A~~~~~~~~~-~~~~~---------~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~t~~~ll~~~~~ 252 (511)
. +.-..+.+.... .+... ...|...|...|++.+|.+++.++... |..+. ...+..-++.|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 2 223334443332 11112 245677888999999999999998653 32222 2355666778999
Q ss_pred cCCHHHHHHHHHHchhh-cCC--CCC--HhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 010405 253 LGWVEKGFYYFHSMFDV-HGI--KPE--LDHYACMVDLLGRAGLLEEAENFIASM 302 (511)
Q Consensus 253 ~g~~~~a~~~~~~~~~~-~~~--~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~ 302 (511)
.+++.+|..++.++... ... +|+ ...|.+++..+...+++.+|...|.++
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999999887531 112 222 345678888888899999988876664
No 266
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=78.43 E-value=21 Score=30.01 Aligned_cols=81 Identities=11% Similarity=0.066 Sum_probs=57.8
Q ss_pred HHHHHHHhC-CCCCCHH---HHHHHHHHHHhcCchhHHHHHHHHHhh--cCCCCchhHHHHHHHHHHcCCchHHHHHHHH
Q 010405 294 EAENFIASM-PMKPDNV---IWGTLLGACRVHRNAEMGQRIGNMLIE--SDQNHDGRYILLSNIYVETLKGENAEEVRKT 367 (511)
Q Consensus 294 ~A~~~~~~~-~~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 367 (511)
.+...|... ..+.|+. .|-..+..+ ..++...+..+|..|.. ++-..+..|...+..+...|++++|.++++.
T Consensus 62 rc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 140 (202)
T 3esl_A 62 RCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLEL 140 (202)
T ss_dssp HHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344445444 2344554 444444443 24456789999999988 6666778899999999999999999999988
Q ss_pred HHhCCCcc
Q 010405 368 MRKRKIKR 375 (511)
Q Consensus 368 m~~~g~~~ 375 (511)
-.+++..|
T Consensus 141 GI~~~A~P 148 (202)
T 3esl_A 141 GAENNCRP 148 (202)
T ss_dssp HHHTTCBS
T ss_pred HHHcCCcc
Confidence 88776654
No 267
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=77.57 E-value=5.5 Score=35.25 Aligned_cols=55 Identities=13% Similarity=0.102 Sum_probs=26.7
Q ss_pred HHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCC
Q 010405 286 LGRAGLLEEAENFIASM-PMKP-DNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQN 340 (511)
Q Consensus 286 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 340 (511)
+.+.|.+++|++....- ..+| |...-..|+..++..|++++|.+-++...+++|.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 33455555555444332 2233 3334444455555555555555555555555553
No 268
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=75.83 E-value=44 Score=34.06 Aligned_cols=87 Identities=9% Similarity=0.044 Sum_probs=46.6
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHH-hc----C-----------chhHHHHHHHHHhh-------cC
Q 010405 283 VDLLGRAGLLEEAENFIASMPMKPD-NVIWGTLLGACR-VH----R-----------NAEMGQRIGNMLIE-------SD 338 (511)
Q Consensus 283 i~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~-~~----g-----------~~~~a~~~~~~~~~-------~~ 338 (511)
..-+...|++++|..+|.-.+.-.. ....+.+++-.. .. + -...|.++.+.... ..
T Consensus 450 A~~ae~~G~~~dAi~LY~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~~~ 529 (661)
T 2qx5_A 450 ARRADEDGRIYDSILLYQLAEEYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQIH 529 (661)
T ss_dssp HHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTTSC
T ss_pred HHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhhhhcc
Confidence 3456678999999999988862111 123444443322 11 1 12234444333222 11
Q ss_pred CCCchhHHHHHHH-----HHHcCCchHHHHHHHHHH
Q 010405 339 QNHDGRYILLSNI-----YVETLKGENAEEVRKTMR 369 (511)
Q Consensus 339 p~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~m~ 369 (511)
+.+..++..|.++ +...|+|++|.+.++++.
T Consensus 530 ~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L~ 565 (661)
T 2qx5_A 530 VKNKEICMLLLNISSIRELYFNKQWQETLSQMELLD 565 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 2233455544333 378999999998887653
No 269
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=74.41 E-value=36 Score=30.06 Aligned_cols=53 Identities=13% Similarity=0.040 Sum_probs=30.4
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchh
Q 010405 215 LAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFD 268 (511)
Q Consensus 215 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 268 (511)
..+.|..++|++....-++.. +-|...=..++..++-.|+++.|.+-++...+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 445566666666666655542 22444444455666666777766666666554
No 270
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=74.25 E-value=19 Score=28.01 Aligned_cols=60 Identities=18% Similarity=0.278 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 010405 122 EALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182 (511)
Q Consensus 122 ~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 182 (511)
+..+-++.+...++.|++......+.+|-+.+++..|..+++-++... .+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 455556666677888999999999999999999999999998887653 334556666654
No 271
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.42 E-value=75 Score=30.57 Aligned_cols=142 Identities=11% Similarity=0.068 Sum_probs=86.3
Q ss_pred CCHHHHHHHHhhCCC-----C----ChhHHHHHHHHHHHCCChhHHHHHHHHHHH-CCCCCCHhHHHHHHHHH----Hhc
Q 010405 87 GSVDDACRVFNQMPK-----R----SLVSWVVLISGFAQNGRPKEALALFREMQS-LDLEPNSAILVSLLSAC----AQL 152 (511)
Q Consensus 87 g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~t~~~ll~~~----~~~ 152 (511)
|+++.|.+.+-.+.+ . .......++..|...|+++...+.+..+.. .|..+.. ...++..+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcC
Confidence 667788776644431 2 234567788889999999988887766543 3333322 23333333 233
Q ss_pred CCHHHHHHHHHHHHH------cC-CCc---cHHHHHHHHHHHHhcCCHHHHHHHHHhcCC----CC-----eeehHHHHH
Q 010405 153 GALDYGNWVYSYIQK------KC-IKL---DSILCAALIDMYAKCGSIDLAMQVFHSYGD----KD-----VSAYTSAIF 213 (511)
Q Consensus 153 ~~~~~a~~~~~~~~~------~~-~~~---~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~-----~~~~~~li~ 213 (511)
...+.... ..... .| +-. .......|...|...|++.+|.+++..+.. .+ +..+...+.
T Consensus 108 ~~~d~~~~--~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 108 KSLDLNTR--ISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp CTTHHHHH--HHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred CchhHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33332111 11111 11 111 234456788889999999999999887652 11 234666777
Q ss_pred HHHHcCChHHHHHHHHHHH
Q 010405 214 GLAMNGHSIEAFELFENMK 232 (511)
Q Consensus 214 ~~~~~g~~~~A~~~~~~m~ 232 (511)
.|...+++..|..++.++.
T Consensus 186 l~l~~~d~~~a~~~~~ki~ 204 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKIL 204 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 8888999999999988874
No 272
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=70.26 E-value=39 Score=26.89 Aligned_cols=80 Identities=10% Similarity=-0.047 Sum_probs=53.0
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhh--cCCCCchhHHHHHHHHHHcCCchHHHHHHHHHH
Q 010405 293 EEAENFIASM-PMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIE--SDQNHDGRYILLSNIYVETLKGENAEEVRKTMR 369 (511)
Q Consensus 293 ~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 369 (511)
+.+...|..- ..+.|+.-...-+.--.. .+.+..+|..+.. +.-..+..|...+..+...|++++|.++++.-.
T Consensus 52 Erc~~~f~~~~~YknD~RyLklWl~ya~~---~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi 128 (152)
T 4a1g_A 52 EHLMKEFLDKKKYHNDPRFISYCLKFAEY---NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGI 128 (152)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHTT---BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHh---cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555544 334455433322222111 2337888888887 566667888899999999999999999998888
Q ss_pred hCCCcc
Q 010405 370 KRKIKR 375 (511)
Q Consensus 370 ~~g~~~ 375 (511)
+++..|
T Consensus 129 ~~~A~P 134 (152)
T 4a1g_A 129 QNQAEP 134 (152)
T ss_dssp HTTCBS
T ss_pred HcCCcc
Confidence 776654
No 273
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=65.47 E-value=49 Score=26.71 Aligned_cols=50 Identities=12% Similarity=0.015 Sum_probs=41.4
Q ss_pred HHHHHHHHHhh--cCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCcc
Q 010405 326 MGQRIGNMLIE--SDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKR 375 (511)
Q Consensus 326 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 375 (511)
.+..+|..|.. +....+..|...+..+...|++.+|.++++.-.+++..|
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 36678888877 566677889999999999999999999999888877654
No 274
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.22 E-value=1e+02 Score=30.22 Aligned_cols=62 Identities=13% Similarity=0.029 Sum_probs=46.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCe-eehHH-------HHHHHHHcCChHHHHHHHHHHHhC
Q 010405 173 DSILCAALIDMYAKCGSIDLAMQVFHSYGDKDV-SAYTS-------AIFGLAMNGHSIEAFELFENMKSK 234 (511)
Q Consensus 173 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~-------li~~~~~~g~~~~A~~~~~~m~~~ 234 (511)
-..++|.++..|...+.++.|..+..+..-|.. .+-+. +...++-.+++.+|.+.+......
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 356888899999999999999999998876643 33222 244566788999999998887654
No 275
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=63.65 E-value=65 Score=26.99 Aligned_cols=60 Identities=10% Similarity=0.148 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHH
Q 010405 154 ALDYGNWVYSYIQKKCIKLD-SILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIF 213 (511)
Q Consensus 154 ~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 213 (511)
+...+..+|..|...|+... ...|......+...|++.+|.++|+.-.+........|..
T Consensus 94 ~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~~ 154 (202)
T 3esl_A 94 NFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLLR 154 (202)
T ss_dssp CHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHH
T ss_pred ccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHH
Confidence 35677777777777765443 4456667777777777777777777666555555444443
No 276
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.59 E-value=74 Score=30.39 Aligned_cols=96 Identities=10% Similarity=-0.107 Sum_probs=61.0
Q ss_pred ehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHH----
Q 010405 207 AYTSAIFGLAMNGHSIEAFELFENMKSKGISPD--SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYA---- 280 (511)
Q Consensus 207 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~---- 280 (511)
++..+...|.+.|+.++|.+.|.++...-..+. ...+..+++.+...+++..+...+.++.....-.++....+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 566777778888888888888888776432222 34566677788888888888888887765332223322211
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC
Q 010405 281 CMVDLLGRAGLLEEAENFIASM 302 (511)
Q Consensus 281 ~li~~~~~~g~~~~A~~~~~~~ 302 (511)
+-+..+...+++.+|...|-+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 1122234567888887777654
No 277
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=63.30 E-value=62 Score=28.13 Aligned_cols=19 Identities=21% Similarity=0.102 Sum_probs=9.3
Q ss_pred HHHHHhcCCHHHHHHHHhh
Q 010405 80 LGGLVRFGSVDDACRVFNQ 98 (511)
Q Consensus 80 i~~~~~~g~~~~A~~~~~~ 98 (511)
+...++.|+++....+++.
T Consensus 9 L~~A~~~g~~~~v~~Ll~~ 27 (285)
T 1wdy_A 9 LIKAVQNEDVDLVQQLLEG 27 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHc
Confidence 3334445555555555544
No 278
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=62.87 E-value=79 Score=27.69 Aligned_cols=17 Identities=6% Similarity=-0.158 Sum_probs=6.4
Q ss_pred cHHHHHHHHHHHHhcCC
Q 010405 173 DSILCAALIDMYAKCGS 189 (511)
Q Consensus 173 ~~~~~~~li~~y~~~g~ 189 (511)
+..+-...+.+..+.|+
T Consensus 141 ~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 141 STNVRRATAFAISVIND 157 (280)
T ss_dssp CHHHHHHHHHHHHTC--
T ss_pred CHHHHHHHHHHHHhcCC
Confidence 44444444444444443
No 279
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=62.32 E-value=83 Score=28.57 Aligned_cols=61 Identities=8% Similarity=0.134 Sum_probs=43.7
Q ss_pred HHHhCCCCCCH--HHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 298 FIASMPMKPDN--VIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 298 ~~~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
+|...+++|.. .+..+-+..+.+++++..|-.+.++++++.|... ..++|.+++..-.+.+
T Consensus 195 YFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~~ 257 (325)
T 3mv2_A 195 YFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSMA 257 (325)
T ss_dssp HGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTSC
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 34444666643 3566667778999999999999999999998532 3456777777766543
No 280
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=61.96 E-value=82 Score=27.57 Aligned_cols=220 Identities=12% Similarity=0.023 Sum_probs=120.0
Q ss_pred hcCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCCChhHHHHHHHHHHhcCC----HHHHHHHHhh--CCCCChhHHH
Q 010405 35 DESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGS----VDDACRVFNQ--MPKRSLVSWV 108 (511)
Q Consensus 35 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~----~~~A~~~~~~--~~~~~~~~~~ 108 (511)
..+..+|...-...+.++.+.|..+....+.+.+..++..+-...+.++.+.|. ......++.. ...++...-.
T Consensus 30 ~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~vr~ 109 (280)
T 1oyz_A 30 RLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRA 109 (280)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHHHH
Confidence 344456666555666677777765444444555556777776677777777663 3333344432 2345555555
Q ss_pred HHHHHHHHCCC-----hhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 010405 109 VLISGFAQNGR-----PKEALALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDM 183 (511)
Q Consensus 109 ~li~~~~~~g~-----~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 183 (511)
..+.++.+.+. ...+...+..+.. .|+...-...+.++...++.+ +...+..+.+ .++..+-...+.+
T Consensus 110 ~a~~aL~~l~~~~~~~~~~~~~~L~~~l~---d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~a 182 (280)
T 1oyz_A 110 TAIESTAQRCKKNPIYSPKIVEQSQITAF---DKSTNVRRATAFAISVINDKA-TIPLLINLLK---DPNGDVRNWAAFA 182 (280)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHTT---CSCHHHHHHHHHHHHTC---C-CHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcccHHHHHHHHHHhh---CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHHHHHHHHHH
Confidence 55555555441 3455555555543 457776677777777777643 3344444443 3455555556666
Q ss_pred HHhcC--CHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010405 184 YAKCG--SIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFY 261 (511)
Q Consensus 184 y~~~g--~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 261 (511)
..+.| ..+-...+.+.+.+++...-...+.++.+.|.. +++..+..+... |+ .-...+.++...|.. .+..
T Consensus 183 L~~~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~~-~~~~~L~~~l~d---~~--vr~~a~~aL~~i~~~-~~~~ 255 (280)
T 1oyz_A 183 ININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDK-RVLSVLCDELKK---NT--VYDDIIEAAGELGDK-TLLP 255 (280)
T ss_dssp HHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCG-GGHHHHHHHHTS---SS--CCHHHHHHHHHHCCG-GGHH
T ss_pred HHhhccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCH-hhHHHHHHHhcC---cc--HHHHHHHHHHhcCch-hhhH
Confidence 66655 333333444445556666666677778888755 445444444432 23 222345566666663 4555
Q ss_pred HHHHchh
Q 010405 262 YFHSMFD 268 (511)
Q Consensus 262 ~~~~~~~ 268 (511)
.+..+.+
T Consensus 256 ~L~~~l~ 262 (280)
T 1oyz_A 256 VLDTMLY 262 (280)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 5555554
No 281
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=61.53 E-value=54 Score=25.38 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=14.7
Q ss_pred HHHHHHhcCchhHHHHHHHHHhhcCCCCc
Q 010405 314 LLGACRVHRNAEMGQRIGNMLIESDQNHD 342 (511)
Q Consensus 314 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 342 (511)
|.-++.+.|++++|.+..+.+++.+|++.
T Consensus 84 LAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 84 LTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 33444555555555555555555555543
No 282
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=60.97 E-value=97 Score=28.09 Aligned_cols=170 Identities=12% Similarity=0.031 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCChHHHHHH----HHHHHhCCCCCCHHHHHHHHHHH
Q 010405 175 ILCAALIDMYAKCGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHSIEAFEL----FENMKSKGISPDSISYIAVLSAC 250 (511)
Q Consensus 175 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~ 250 (511)
..+.++..=|.+.+++++|++++..- ...+.++|+...|-++ .+-..+.+++++......++..+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 35666777788999999999886532 3456677887766665 44445678888888888888776
Q ss_pred hccCCHH-HHHHHHHHchhh---cC--CCCCHhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---
Q 010405 251 SHLGWVE-KGFYYFHSMFDV---HG--IKPELDHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVH--- 321 (511)
Q Consensus 251 ~~~g~~~-~a~~~~~~~~~~---~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~--- 321 (511)
..-..-+ .=.++.+.+.+- .| ..-++.....+...|.+.|++.+|...|- .+..-|...+..++.-+...
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i-~~~~~s~~~~a~~l~~w~~~~~~ 181 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM-LGTHDSMIKYVDLLWDWLCQVDD 181 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH-hCCCccHHHHHHHHHHHHHhcCC
Confidence 5532111 112333333321 11 22467788899999999999999998776 22111355555555444333
Q ss_pred CchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010405 322 RNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRK 370 (511)
Q Consensus 322 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 370 (511)
|...++--+. ...+--|.-.|+...|..+++...+
T Consensus 182 ~~~~e~dlf~--------------~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 182 IEDSTVAEFF--------------SRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CCHHHHHHHH--------------HHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred CCcchHHHHH--------------HHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4333322111 1223345677899999998886653
No 283
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=60.89 E-value=59 Score=25.55 Aligned_cols=72 Identities=11% Similarity=0.032 Sum_probs=45.6
Q ss_pred CCCHhHHHHHHHHHHHcCCHH---HHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchh
Q 010405 273 KPELDHYACMVDLLGRAGLLE---EAENFIASM-PMKP-DNV-IWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGR 344 (511)
Q Consensus 273 ~p~~~~~~~li~~~~~~g~~~---~A~~~~~~~-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 344 (511)
.|+..+--.+..++.+..+.+ ++..++++. ...| +.. ....|.-++.+.|++++|.+..+.+++.+|++..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 355555555555555555433 445555554 1223 233 33445567899999999999999999999987543
No 284
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=59.55 E-value=1.2e+02 Score=28.61 Aligned_cols=154 Identities=12% Similarity=0.001 Sum_probs=75.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC----CCe-----eehHHHHHHHHHcCChHHHHHHHHHHHhC--CCCCCHHHHHHH-
Q 010405 179 ALIDMYAKCGSIDLAMQVFHSYGD----KDV-----SAYTSAIFGLAMNGHSIEAFELFENMKSK--GISPDSISYIAV- 246 (511)
Q Consensus 179 ~li~~y~~~g~~~~A~~~~~~~~~----~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~l- 246 (511)
-|+..|...|++.+|.+++.++.+ .|- ..+-.-+..|...++..++...+...... .+.|++.....+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 355555666666666555544432 111 12333445566666766666666665431 122333322111
Q ss_pred ---HHHHh-ccCCHHHHHHHHHHchhhcCCC--C---CHhHHHHHHHHHHHcCCHHHHHHHHH-----hCCCCCCHHHHH
Q 010405 247 ---LSACS-HLGWVEKGFYYFHSMFDVHGIK--P---ELDHYACMVDLLGRAGLLEEAENFIA-----SMPMKPDNVIWG 312 (511)
Q Consensus 247 ---l~~~~-~~g~~~~a~~~~~~~~~~~~~~--p---~~~~~~~li~~~~~~g~~~~A~~~~~-----~~~~~p~~~~~~ 312 (511)
.-.+. ..+++..|...|-+..+.+.-. | +...|..|..... ++..+-..++. .. ..|+...+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~--~~r~el~~~l~~~~~~~~-~~pei~~l~ 260 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIML--GQSDDVNQLVSGKLAITY-SGRDIDAMK 260 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHSHHHHTT-CSHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHc--CCHHHHHHHhcccccccc-CCccHHHHH
Confidence 11244 6788888877776665433211 1 1223444444333 22222222221 11 245665566
Q ss_pred HHHHHHHhcCchhHHHHHHHHHhh
Q 010405 313 TLLGACRVHRNAEMGQRIGNMLIE 336 (511)
Q Consensus 313 ~ll~~~~~~g~~~~a~~~~~~~~~ 336 (511)
.++.++ ..+++.....+++....
T Consensus 261 ~L~~a~-~~~dl~~f~~iL~~~~~ 283 (394)
T 3txn_A 261 SVAEAS-HKRSLADFQAALKEYKK 283 (394)
T ss_dssp HHHHHH-HTTCHHHHHHHHHHSTT
T ss_pred HHHHHH-HhCCHHHHHHHHHHHHH
Confidence 666665 45677777777666544
No 285
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.04 E-value=23 Score=34.02 Aligned_cols=95 Identities=8% Similarity=-0.055 Sum_probs=60.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHchhhc-CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHHHHHHH--
Q 010405 242 SYIAVLSACSHLGWVEKGFYYFHSMFDVH-GIKPELDHYACMVDLLGRAGLLEEAENFIASM----PMKPDNVIWGTL-- 314 (511)
Q Consensus 242 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l-- 314 (511)
+...+...+.+.|+++.|.+.|.++.... +...-...+..++..+...+++..+...++++ ...+|....+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 55667788888888888888888887632 22223566777888888888888888877765 112232222111
Q ss_pred --HHHHHhcCchhHHHHHHHHHhh
Q 010405 315 --LGACRVHRNAEMGQRIGNMLIE 336 (511)
Q Consensus 315 --l~~~~~~g~~~~a~~~~~~~~~ 336 (511)
.-.+...+++..|-..|-.+..
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 1113456777777777766655
No 286
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=56.79 E-value=1.2e+02 Score=28.01 Aligned_cols=69 Identities=9% Similarity=0.086 Sum_probs=39.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHccCCCCC--hhHHHHHHHHHHhcCC--HHHHHHHHhhCCCCChhHHHHHHHHH
Q 010405 45 WNSMINGYVRNGEILEGLKLFDKMPQRN--DVSWNSILGGLVRFGS--VDDACRVFNQMPKRSLVSWVVLISGF 114 (511)
Q Consensus 45 ~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~li~~~ 114 (511)
...+|.-|...++.++|...++++..|. ......+|..-...++ -+.+-.++..+.. ++.+-..+..++
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf 129 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTNDVEKSF 129 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHHHHHHHH
Confidence 5667777888888888888888887654 2222333333222222 3345566666653 444444444443
No 287
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=51.98 E-value=1.2e+02 Score=26.24 Aligned_cols=24 Identities=13% Similarity=0.022 Sum_probs=13.2
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCC
Q 010405 15 NSLIQFYSVCGRVRDARWVFDESD 38 (511)
Q Consensus 15 ~~li~~~~~~g~~~~A~~~f~~~~ 38 (511)
++.+...++.|+++....+++.-.
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~ 29 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGA 29 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTC
T ss_pred chHHHHHHHcCCHHHHHHHHHcCC
Confidence 344445556666666666665433
No 288
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=50.03 E-value=36 Score=26.20 Aligned_cols=63 Identities=14% Similarity=0.180 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCe---eehHHHHHHHHHcCC--hHHHHHHHHHHHhCCCCCC
Q 010405 177 CAALIDMYAKCGSIDLAMQVFHSYGDKDV---SAYTSAIFGLAMNGH--SIEAFELFENMKSKGISPD 239 (511)
Q Consensus 177 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 239 (511)
.+.++.-|...|+.++|.+.++++..|.. +...++..++-+.+. .+.+..++..+...|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 34567777777888888888887765421 222333333333322 3456666777766654433
No 289
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=49.45 E-value=88 Score=26.99 Aligned_cols=87 Identities=16% Similarity=0.094 Sum_probs=41.2
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHC--CCCC----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 010405 109 VLISGFAQNGRPKEALALFREMQSL--DLEP----NSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALID 182 (511)
Q Consensus 109 ~li~~~~~~g~~~~A~~~~~~m~~~--~~~p----~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 182 (511)
--++.+....++++|.++.++..+. ++++ +.......+..-.....-.-+..+.+.+. . .++.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~--~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S--SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T--CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h--cCCHHHHHHHHH
Confidence 3466778888888888888766432 2221 11122222222222222222333333332 2 233444444555
Q ss_pred HHHhcCCHHHHHHHHH
Q 010405 183 MYAKCGSIDLAMQVFH 198 (511)
Q Consensus 183 ~y~~~g~~~~A~~~~~ 198 (511)
.+.+.|+-++|.++|-
T Consensus 100 ~L~rLg~~~~A~~lfL 115 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFL 115 (235)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHH
Confidence 5566666666665554
No 290
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=49.40 E-value=64 Score=24.76 Aligned_cols=60 Identities=12% Similarity=0.222 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCh---hHHHHHHHHHHHCCC--hhHHHHHHHHHHHCCCC
Q 010405 77 NSILGGLVRFGSVDDACRVFNQMPKRSL---VSWVVLISGFAQNGR--PKEALALFREMQSLDLE 136 (511)
Q Consensus 77 ~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~ 136 (511)
+.++.-|...|+.++|...++++..|.- .....+..++-+.++ .+.+..++..+...|+-
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4556666666666666666666654421 233334444444322 23455566666555543
No 291
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=45.90 E-value=1.1e+02 Score=24.26 Aligned_cols=50 Identities=10% Similarity=0.068 Sum_probs=21.7
Q ss_pred HHHHHHHHHHCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 010405 123 ALALFREMQSLDLEP-NSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKL 172 (511)
Q Consensus 123 A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 172 (511)
+.++|..|...|+-- -+.-|......+...|++.+|.++++.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 444455454444322 12233334444444445555555544444444333
No 292
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=44.19 E-value=75 Score=27.11 Aligned_cols=51 Identities=18% Similarity=0.090 Sum_probs=41.8
Q ss_pred hHHHHHHHHHhh--cCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCcc
Q 010405 325 EMGQRIGNMLIE--SDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKR 375 (511)
Q Consensus 325 ~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 375 (511)
+.+..+|..|.. ++-..+..|...+..+...|++.+|.++++.-.+++..|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 467788888887 566677889999999999999999999998877766543
No 293
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=44.01 E-value=1.4e+02 Score=24.92 Aligned_cols=48 Identities=15% Similarity=0.031 Sum_probs=22.9
Q ss_pred HHhcCChHHHHHHHhcCCCC---ChhHHHHHHHHHHHcCChHHHHHHHccCC
Q 010405 21 YSVCGRVRDARWVFDESDDL---DVVSWNSMINGYVRNGEILEGLKLFDKMP 69 (511)
Q Consensus 21 ~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 69 (511)
.++.|+++....+++.-..+ |...++ .+...++.|+.+-+.-+++.-.
T Consensus 16 A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~~~ 66 (240)
T 3eu9_A 16 ATQYGIYERCRELVEAGYDVRQPDKENVT-LLHWAAINNRIDLVKYYISKGA 66 (240)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHcCChHHHHHHHHcCCCcCCCCCCCCC-HHHHHHHhCCHHHHHHHHHcCC
Confidence 34566666666666643322 222122 2333445555555555554433
No 294
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=43.31 E-value=2.1e+02 Score=26.78 Aligned_cols=331 Identities=11% Similarity=0.083 Sum_probs=160.9
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCCh---hHHHHHHHHHHHcCChHHHHHHHccCCCC---ChhHHHHHHHHHHhcCC
Q 010405 15 NSLIQFYSVCGRVRDARWVFDESDDLDV---VSWNSMINGYVRNGEILEGLKLFDKMPQR---NDVSWNSILGGLVRFGS 88 (511)
Q Consensus 15 ~~li~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~ 88 (511)
.+.+..-+..|+++-...+++.-..++. ...+ .+...++.|+.+-+.-+++.-... |..- .+.+...++.|+
T Consensus 15 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g-~t~L~~A~~~g~ 92 (437)
T 1n11_A 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVET-PLHMAARAGHTEVAKYLLQNKAKVNAKAKDD-QTPLHCAARIGH 92 (437)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCC-HHHHHHHHTCHHHHHHHHHHTCCSSCCCTTS-CCHHHHHHHHTC
T ss_pred CCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CCHHHHHHHCCC
Confidence 3456666788999999999987554332 2223 344556778888777777654432 2222 233445567788
Q ss_pred HHHHHHHHhhCCCCC---hhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCC---HhHHHHHHHHHHhcCCHHHHHHHH
Q 010405 89 VDDACRVFNQMPKRS---LVSWVVLISGFAQNGRPKEALALFREMQSLDLEPN---SAILVSLLSACAQLGALDYGNWVY 162 (511)
Q Consensus 89 ~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~t~~~ll~~~~~~~~~~~a~~~~ 162 (511)
.+-+.-+++.-..++ ..-++. +...+..|+.+-+..+++ .+..++ ..-.+ .+...+..|+.+-+
T Consensus 93 ~~~v~~Ll~~ga~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~t-~L~~A~~~g~~~~v---- 162 (437)
T 1n11_A 93 TNMVKLLLENNANPNLATTAGHTP-LHIAAREGHVETVLALLE----KEASQACMTKKGFT-PLHVAAKYGKVRVA---- 162 (437)
T ss_dssp HHHHHHHHHHTCCTTCCCTTCCCH-HHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSCC-HHHHHHHTTCHHHH----
T ss_pred HHHHHHHHhCCCCCCCCCCCCCcH-HHHHHHcCCHHHHHHHHh----CCCCCcCCCCCCCC-HHHHHHHcCCHHHH----
Confidence 888888887654332 222222 333445677665555443 332221 11122 23344566776544
Q ss_pred HHHHHcCCCccHH--HHHHHHHHHHhcCCHHHHHHHHHhcCCCCee---ehHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 010405 163 SYIQKKCIKLDSI--LCAALIDMYAKCGSIDLAMQVFHSYGDKDVS---AYTSAIFGLAMNGHSIEAFELFENMKSKGIS 237 (511)
Q Consensus 163 ~~~~~~~~~~~~~--~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 237 (511)
+.+.+.|..++.. ...+.+...+..|+.+-+.-+++.-..++.. .++. +...+..|+.+-+..+ .+.|..
T Consensus 163 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~~~~L----l~~g~~ 237 (437)
T 1n11_A 163 ELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTP-LHIAAKQNQVEVARSL----LQYGGS 237 (437)
T ss_dssp HHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCH-HHHHHHTTCHHHHHHH----HHTTCC
T ss_pred HHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCH-HHHHHHcCCHHHHHHH----HHcCCC
Confidence 4445555444321 1112334456678887776666654443322 2333 3344556665444333 344443
Q ss_pred CCHH---HHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCH---hHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHH
Q 010405 238 PDSI---SYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPEL---DHYACMVDLLGRAGLLEEAENFIASM-PM-KPDNV 309 (511)
Q Consensus 238 p~~~---t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~ 309 (511)
++.. ..+.|. ..+..|..+-...+++ .+..++. .-.+ .+...++.|+.+-+.-+++.- .+ ..+..
T Consensus 238 ~~~~~~~g~t~L~-~A~~~g~~~~v~~Ll~-----~~~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~ 310 (437)
T 1n11_A 238 ANAESVQGVTPLH-LAAQEGHAEMVALLLS-----KQANGNLGNKSGLT-PLHLVAQEGHVPVADVLIKHGVMVDATTRM 310 (437)
T ss_dssp TTCCCTTCCCHHH-HHHHTTCHHHHHHHHT-----TTCCTTCCCTTCCC-HHHHHHHHTCHHHHHHHHHHTCCTTCCCSS
T ss_pred CCCCCCCCCCHHH-HHHHCCCHHHHHHHHh-----cCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHhCCccCCCCCCC
Confidence 3321 122232 3344566655544433 2333221 1112 233344677777666666542 11 11222
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCcc
Q 010405 310 IWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKR 375 (511)
Q Consensus 310 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 375 (511)
-++.|.. ....|+.+-...+++.-...+..+..-...| ..-+..|..+ +.+.+.+.|..+
T Consensus 311 g~t~L~~-A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L-~~A~~~g~~~----iv~~Ll~~ga~~ 370 (437)
T 1n11_A 311 GYTPLHV-ASHYGNIKLVKFLLQHQADVNAKTKLGYSPL-HQAAQQGHTD----IVTLLLKNGASP 370 (437)
T ss_dssp CCCHHHH-HHHSSCSHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHH----HHHHHHHTTCCS
T ss_pred CCCHHHH-HHHcCcHHHHHHHHhcCCCCCCCCCCCCCHH-HHHHHCChHH----HHHHHHHCcCCC
Confidence 2233333 3456777766555554332222222122222 2233556654 344455667654
No 295
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=43.26 E-value=2.8e+02 Score=29.75 Aligned_cols=52 Identities=8% Similarity=0.148 Sum_probs=38.4
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHHHHHHHH
Q 010405 79 ILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALALFREMQ 131 (511)
Q Consensus 79 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 131 (511)
++..+...|..+-|.++..-.+. +...-..+..+|...|++++|.+.|++.-
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 55666778888888777666664 44443467888999999999999998753
No 296
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=42.06 E-value=7.7 Score=22.64 Aligned_cols=17 Identities=29% Similarity=0.616 Sum_probs=11.8
Q ss_pred CCccccc-cCccccCCCC
Q 010405 494 RKHYHHF-EDGSCSCLEY 510 (511)
Q Consensus 494 ~~~~h~~-~~g~~s~~~~ 510 (511)
|=.=|.. ++|.|||+-|
T Consensus 12 CPkPHRL~~~~~C~CG~y 29 (42)
T 2l0z_A 12 CPLPHRLNSLGGCRCGKY 29 (42)
T ss_dssp CCTTSCCCTTSSBTTTTB
T ss_pred CCCCceecCCceeccccc
Confidence 3333444 7899999976
No 297
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=41.30 E-value=33 Score=27.32 Aligned_cols=62 Identities=15% Similarity=0.203 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCe---eehHHHHHHHHHcCC--hHHHHHHHHHHHhCCCCC
Q 010405 177 CAALIDMYAKCGSIDLAMQVFHSYGDKDV---SAYTSAIFGLAMNGH--SIEAFELFENMKSKGISP 238 (511)
Q Consensus 177 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p 238 (511)
.+.++.-|...|+.++|.+.++++..|.. +...++..++-+.++ .+.+..++..+...|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 34567777777888888888887765421 222333333333222 334566666666655443
No 298
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=40.92 E-value=1.6e+02 Score=24.60 Aligned_cols=64 Identities=13% Similarity=0.063 Sum_probs=42.4
Q ss_pred HHHHHHHHH---HCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC-----HHHHHHHHHHHHHcCCC
Q 010405 107 WVVLISGFA---QNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA-----LDYGNWVYSYIQKKCIK 171 (511)
Q Consensus 107 ~~~li~~~~---~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~ 171 (511)
..-+|+++. +..+++.|+-.+.+|++.| .|....-..++.+....|. +..|...++.....|.+
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 334566654 4688999999999999999 7777666667766665553 33444455555555543
No 299
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=40.81 E-value=58 Score=25.89 Aligned_cols=60 Identities=12% Similarity=0.222 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCh---hHHHHHHHHHHHCCC--hhHHHHHHHHHHHCCCC
Q 010405 77 NSILGGLVRFGSVDDACRVFNQMPKRSL---VSWVVLISGFAQNGR--PKEALALFREMQSLDLE 136 (511)
Q Consensus 77 ~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~ 136 (511)
+.++.-|...|+.++|...++++..|.- .....+..++-+.++ .+.+..++..+...|+-
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4455566666666666666666654421 223333334433222 23344555555555433
No 300
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=38.49 E-value=11 Score=25.09 Aligned_cols=22 Identities=23% Similarity=0.449 Sum_probs=18.0
Q ss_pred ceEEEeCCCccccccCccccCC
Q 010405 487 RKISIRDRKHYHHFEDGSCSCL 508 (511)
Q Consensus 487 ~~i~~~d~~~~h~~~~g~~s~~ 508 (511)
..|=+.|.+..|+|+|||-+-.
T Consensus 8 k~v~LkDGstvyiFKDGKMamE 29 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGME 29 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEEE
T ss_pred eeEecCCCcEEEEEcCCceehh
Confidence 4577889999999999996543
No 301
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=37.71 E-value=3.4e+02 Score=27.55 Aligned_cols=80 Identities=6% Similarity=0.072 Sum_probs=40.9
Q ss_pred HHHHHHHcCChHHHHHHHccCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHH---CCChhHHH
Q 010405 48 MINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKRSLVSWVVLISGFAQ---NGRPKEAL 124 (511)
Q Consensus 48 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~ 124 (511)
....+.-.|.++.|++.+-+.-..|.+.+...+.- .|-+.....++..-......-+..||..|.+ ..++.+|+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~~~vdAVH~AIaL~~---~gLL~~~~~lls~~~~~~~lN~arLI~~Yt~~F~~td~~~Al 376 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTFSEMDAVHLAIGLAS---LKLFKIDSSTRLTKKPKRDIRFANILANYTKSFRYSDPRVAV 376 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCHHHHHHHHHHHHH---TTC-----------------CHHHHHHHHHTTTTTTCHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHhcCchhHHHHHHHHHH---cCCccCCCcccccCCCcccccHHHHHHHHHHHhhcCCHHHHH
Confidence 45566678999999998877633333333333322 3333321111111001112336678888765 47888888
Q ss_pred HHHHHH
Q 010405 125 ALFREM 130 (511)
Q Consensus 125 ~~~~~m 130 (511)
+.|-.+
T Consensus 377 ~Y~~li 382 (661)
T 2qx5_A 377 EYLVLI 382 (661)
T ss_dssp HHHHGG
T ss_pred HHHHHH
Confidence 887766
No 302
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=37.44 E-value=28 Score=24.68 Aligned_cols=48 Identities=17% Similarity=0.090 Sum_probs=34.0
Q ss_pred CccHHHHHHHHHHHHHHHHHcCcccCCccccccCchhhhhhhhhhhhHHHHHHHHh
Q 010405 398 HEKTQEIYQFWEEIVKKIKNYGYNVETRSVMFDIEEEEKETVIGYHSEKLALAFGL 453 (511)
Q Consensus 398 ~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 453 (511)
.+...++++.+++...+++..|+.||-..+-. ++..+.++.+..+||=
T Consensus 12 rgdlirIl~~ieekinELk~dG~ePDIiL~G~--------eayef~~e~v~~e~g~ 59 (103)
T 2pk8_A 12 RGDLIRILGEIEEKMNELKMDGFNPDIILFGR--------EAYNFLSNLLKKEMEE 59 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCEEEECH--------HHHHHHHHHHHHHHTC
T ss_pred cccHHHHHHHHHHHHHHHHhcCCCCCeEEEcH--------HHHHHHHHHHhHhhcc
Confidence 35667788888889999999999999765332 1233456666677764
No 303
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=36.51 E-value=1.3e+02 Score=27.18 Aligned_cols=60 Identities=12% Similarity=0.175 Sum_probs=42.9
Q ss_pred HHhCCCCCCH--HHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 299 IASMPMKPDN--VIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 299 ~~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
|...+++|.. .+..+-+....+++++..|-.+.++++++.|... ..++|.+++..-.+.+
T Consensus 187 FT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~~~qArkil~~ce~~~ 248 (320)
T 3mkr_B 187 FTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE--------------VAQQTRKILSACEKNP 248 (320)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH--------------HHHHHHHHHHHHHHSC
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 4444566543 3556667778999999999999999999987521 3356778877776654
No 304
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=36.02 E-value=96 Score=26.76 Aligned_cols=29 Identities=21% Similarity=0.252 Sum_probs=20.0
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHh
Q 010405 273 KPELDHYACMVDLLGRAGLLEEAENFIAS 301 (511)
Q Consensus 273 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 301 (511)
.++.......+..+.+.|+-++|.++|=+
T Consensus 88 ~~~~~~~r~~v~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 88 SNEIVHLKSGTENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 34455566667778888888888877643
No 305
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=35.77 E-value=2.2e+02 Score=24.83 Aligned_cols=91 Identities=10% Similarity=0.062 Sum_probs=46.3
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCCchH
Q 010405 282 MVDLLGRAGLLEEAENFIASMPMKPDN-VIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLKGEN 360 (511)
Q Consensus 282 li~~~~~~g~~~~A~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 360 (511)
.+...+..|+.+-+.-+++.-....+. .-++. +......|+.+-+..+++.-...+..+..-....+..-...|+.
T Consensus 132 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~-- 208 (285)
T 3kea_A 132 SFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSC-IHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDI-- 208 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHH-HHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCH--
T ss_pred HHHHHHHcCCHHHHHHHHhCCCccccccCCccH-HHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCH--
Confidence 344445667777666666554322232 23333 44445678888777777775554433322222212222345554
Q ss_pred HHHHHHHHHhCCCccCC
Q 010405 361 AEEVRKTMRKRKIKRAP 377 (511)
Q Consensus 361 A~~~~~~m~~~g~~~~~ 377 (511)
++.+.+.+.|..++.
T Consensus 209 --~~v~~Ll~~gad~~~ 223 (285)
T 3kea_A 209 --EMLQALFKYDINIYS 223 (285)
T ss_dssp --HHHHHHTTSCBCSTT
T ss_pred --HHHHHHHHcCCCCCC
Confidence 445556677765543
No 306
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=34.47 E-value=2e+02 Score=23.92 Aligned_cols=46 Identities=22% Similarity=0.250 Sum_probs=34.2
Q ss_pred HHHHHHHH---HCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 010405 108 VVLISGFA---QNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLG 153 (511)
Q Consensus 108 ~~li~~~~---~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 153 (511)
.-+|+++. +..+++.|+-.+.+|++.|-.|....-..++.+....|
T Consensus 8 Yd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 8 YDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 34566664 46899999999999999998777776666666665544
No 307
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=34.11 E-value=48 Score=23.97 Aligned_cols=39 Identities=18% Similarity=0.186 Sum_probs=28.3
Q ss_pred CCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHHHH
Q 010405 87 GSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEALA 125 (511)
Q Consensus 87 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 125 (511)
.+.+.|.++++.++.++..+|..++.++...|+..-|..
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHH
Confidence 457778888888887777788888887776676665543
No 308
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=33.72 E-value=2.1e+02 Score=23.84 Aligned_cols=81 Identities=7% Similarity=0.010 Sum_probs=40.9
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCC---ChhHHHHHHHHHHHcCChHHHHHHHccCCCC---ChhHHHHHHHHHHhcCCHH
Q 010405 17 LIQFYSVCGRVRDARWVFDESDDL---DVVSWNSMINGYVRNGEILEGLKLFDKMPQR---NDVSWNSILGGLVRFGSVD 90 (511)
Q Consensus 17 li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~ 90 (511)
.+...++.|+.+....+++.-..+ |...++.+. ..+..|+.+-+..+++.-..+ +.... +.+...+..|+.+
T Consensus 14 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~ 91 (237)
T 3b7b_A 14 PLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLM-EAAENNHLEAVKYLIKAGALVDPKDAEGS-TCLHLAAKKGHYE 91 (237)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHH-HHHHTTCHHHHHHHHTTTCCCCCCCTTSC-CHHHHHHHTTCHH
T ss_pred HHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHH-HHHHhCCHHHHHHHHhCCCCCCCCCCCCC-cHHHHHHHcCCHH
Confidence 345556677887777777654322 222233333 334566666666665543322 11111 2233344556666
Q ss_pred HHHHHHhhC
Q 010405 91 DACRVFNQM 99 (511)
Q Consensus 91 ~A~~~~~~~ 99 (511)
-+..+++.-
T Consensus 92 ~~~~Ll~~~ 100 (237)
T 3b7b_A 92 VVQYLLSNG 100 (237)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHHhCC
Confidence 666666543
No 309
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=32.46 E-value=2e+02 Score=23.18 Aligned_cols=16 Identities=0% Similarity=0.046 Sum_probs=8.8
Q ss_pred HhcCCHHHHHHHHhhC
Q 010405 84 VRFGSVDDACRVFNQM 99 (511)
Q Consensus 84 ~~~g~~~~A~~~~~~~ 99 (511)
+..|+.+....++..-
T Consensus 13 ~~~g~~~~v~~ll~~~ 28 (201)
T 3hra_A 13 ANQRDTKKVKEILQDT 28 (201)
T ss_dssp HHTTCHHHHHHHHTCT
T ss_pred HHhccHHHHHHHHHcC
Confidence 4455666666655543
No 310
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=30.45 E-value=3.1e+02 Score=24.94 Aligned_cols=26 Identities=12% Similarity=0.382 Sum_probs=16.4
Q ss_pred HHHHHHHHHcCChHHHHHHHccCCCC
Q 010405 46 NSMINGYVRNGEILEGLKLFDKMPQR 71 (511)
Q Consensus 46 ~~li~~~~~~g~~~~A~~~~~~m~~~ 71 (511)
..++.-|...|+.++|...++++..|
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 44566666666666666666666554
No 311
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=30.12 E-value=2.5e+02 Score=23.64 Aligned_cols=66 Identities=20% Similarity=0.272 Sum_probs=44.7
Q ss_pred hHHHHHHHHHH---HCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC-----HHHHHHHHHHHHHcCC
Q 010405 105 VSWVVLISGFA---QNGRPKEALALFREMQSLDLEPNSAILVSLLSACAQLGA-----LDYGNWVYSYIQKKCI 170 (511)
Q Consensus 105 ~~~~~li~~~~---~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 170 (511)
..+.-+|+++. +..+++.|+-.+.+|++.|-.|....-..++.+.-..|. +..|...++.....|.
T Consensus 33 d~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 33 QNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 34445667765 468999999999999999988877777777777655553 3344445555555554
No 312
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=29.59 E-value=80 Score=27.86 Aligned_cols=178 Identities=12% Similarity=0.013 Sum_probs=96.5
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCCC---ChhHHHHHHHHHHhcCCHHHH
Q 010405 16 SLIQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQR---NDVSWNSILGGLVRFGSVDDA 92 (511)
Q Consensus 16 ~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A 92 (511)
+.+...+..|+.+-+..+++.-..++...-.+.+...+..|+.+-+..+++.-..+ |..-++ .+...+..|+.+-+
T Consensus 33 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t-~L~~A~~~g~~~~v 111 (285)
T 3kea_A 33 SASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNT-ALYYAVDSGNMQTV 111 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCc-HHHHHHHcCCHHHH
Confidence 34555667899999988888644332221123444556778888777777765443 222222 33445677888888
Q ss_pred HHHHhhCCCC---ChhHHHHHHHHHHHCCChhHHHHHHHHHHHCCCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010405 93 CRVFNQMPKR---SLVSWVVLISGFAQNGRPKEALALFREMQSLDLEPNSA-ILVSLLSACAQLGALDYGNWVYSYIQKK 168 (511)
Q Consensus 93 ~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 168 (511)
..+++.-..+ +..-|.+.+...+..|+.+-+ +.+.+.|..+... .-.+.+...+..|+.+-+..+++.-...
T Consensus 112 ~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~ 187 (285)
T 3kea_A 112 KLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIV----SYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTST 187 (285)
T ss_dssp HHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHH----HHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCC
Confidence 8888774332 222333445555667776543 4444555433221 2233445556778887776666554432
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 010405 169 CIKLDSILCAALIDMYAKCGSIDLAMQVFHS 199 (511)
Q Consensus 169 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 199 (511)
... +..-.+..+...++.|+.+-+.-+++.
T Consensus 188 n~~-~~~g~t~~L~~A~~~~~~~~v~~Ll~~ 217 (285)
T 3kea_A 188 NTN-NSLLFIPDIKLAIDNKDIEMLQALFKY 217 (285)
T ss_dssp CTT-CCCBCCTTHHHHHHHTCHHHHHHHTTS
T ss_pred Ccc-cCCCCChHHHHHHHcCCHHHHHHHHHc
Confidence 211 111112223334556777766655554
No 313
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=29.43 E-value=1.2e+02 Score=23.70 Aligned_cols=62 Identities=10% Similarity=0.042 Sum_probs=39.2
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHH
Q 010405 230 NMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLE 293 (511)
Q Consensus 230 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 293 (511)
.+.+.|++++..-. .++..+...+..-.|.++++.+.+ .+...+..|...-++.+...|-+.
T Consensus 12 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~-~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 12 TLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEG-KFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGG-GCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHH-hCCCCChhhHHHHHHHHHHCCCEE
Confidence 45667777665543 344455555556677888888876 444455666666667778887753
No 314
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=29.26 E-value=60 Score=23.44 Aligned_cols=34 Identities=15% Similarity=0.129 Sum_probs=17.4
Q ss_pred ChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChH
Q 010405 26 RVRDARWVFDESDDLDVVSWNSMINGYVRNGEIL 59 (511)
Q Consensus 26 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 59 (511)
..+.|+++++.++.+...+|..++.++...|...
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~ 85 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDM 85 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHH
Confidence 3455555555555555555555555554444433
No 315
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=28.76 E-value=2.5e+02 Score=23.28 Aligned_cols=180 Identities=9% Similarity=0.002 Sum_probs=0.0
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHHCCCCCCHhHHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHH--HHHHHH
Q 010405 109 VLISGFAQNGRPKEALALFREMQSLDLEPNSAILV--SLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCA--ALIDMY 184 (511)
Q Consensus 109 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~y 184 (511)
+.+...++.|+.+-+..+++.+.+.|..++..... +.+...+..|+.+ +.+.+++.|..++..... +.+...
T Consensus 11 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A 86 (241)
T 1k1a_A 11 TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLA 86 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHH
Q ss_pred HhcCCHHHHHHHHHhcC----C---CCeeehHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHhccC
Q 010405 185 AKCGSIDLAMQVFHSYG----D---KDVSAYTSAIFGLAMNGHSIEAFELFENMKSKGISPDSIS---YIAVLSACSHLG 254 (511)
Q Consensus 185 ~~~g~~~~A~~~~~~~~----~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~~~~~~g 254 (511)
+..|+.+-...+++... . .|...++.+..+..... .++++.+.+.|..++... -...+...+..|
T Consensus 87 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~-----~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~ 161 (241)
T 1k1a_A 87 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC-----QETVQLLLERGADIDAVDIKSGRSPLIHAVENN 161 (241)
T ss_dssp HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTC-----HHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCC-----HHHHHHHHHcCCCcccccccCCCcHHHHHHHcC
Q ss_pred CHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 010405 255 WVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLEEAENFIA 300 (511)
Q Consensus 255 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 300 (511)
+.+-+..+++.-.. +......-...+....+.|+.+-+.-+++
T Consensus 162 ~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 204 (241)
T 1k1a_A 162 SLSMVQLLLQHGAN---VNAQMYSGSSALHSASGRGLLPLVRTLVR 204 (241)
T ss_dssp CHHHHHHHHHTTCC---TTCBCTTSCBHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHh
No 316
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.24 E-value=1.6e+02 Score=28.88 Aligned_cols=63 Identities=11% Similarity=0.056 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCH--hHH-HHHHHHHHHcCCHHHHHHHHHhC
Q 010405 240 SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPEL--DHY-ACMVDLLGRAGLLEEAENFIASM 302 (511)
Q Consensus 240 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~-~~li~~~~~~g~~~~A~~~~~~~ 302 (511)
...++.+++.|.+.+.+++|..+..+..--....++. ..| -.+...+.-.+++.+|.+.+...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3456777778888888888888877664200001111 122 23456666677888887776654
No 317
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=28.22 E-value=1.7e+02 Score=22.73 Aligned_cols=62 Identities=8% Similarity=0.109 Sum_probs=35.4
Q ss_pred HHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHH
Q 010405 129 EMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSID 191 (511)
Q Consensus 129 ~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 191 (511)
.+.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|.---++.+...|-+.
T Consensus 12 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 12 TLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 355667666553 33444555555555667777777776655555444444456666666543
No 318
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=27.82 E-value=3.4e+02 Score=24.43 Aligned_cols=60 Identities=12% Similarity=0.160 Sum_probs=32.5
Q ss_pred hHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC--HHHHHHHHHHchh
Q 010405 208 YTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGW--VEKGFYYFHSMFD 268 (511)
Q Consensus 208 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~--~~~a~~~~~~~~~ 268 (511)
.+.++.-|...|+.++|...++++...... .......+..+.-+.++ .+....++..+.+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~ 230 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWK 230 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHH
Confidence 345666777777888888777776421111 12333444444444332 3445566666665
No 319
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=27.69 E-value=4.8e+02 Score=26.20 Aligned_cols=338 Identities=10% Similarity=-0.041 Sum_probs=160.2
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHccCCC---CChhHHHHHHH-------------
Q 010405 18 IQFYSVCGRVRDARWVFDESDDLDVVSWNSMINGYVRNGEILEGLKLFDKMPQ---RNDVSWNSILG------------- 81 (511)
Q Consensus 18 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~------------- 81 (511)
+..+++.+++...+..+.. ++.+...--....+....|+..+|....+.+-. ..+.....++.
T Consensus 79 l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~~~ 157 (618)
T 1qsa_A 79 VNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAY 157 (618)
T ss_dssp HHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCHHHH
Confidence 4556667777777776665 444554445556667777776555554433311 11222233333
Q ss_pred -----HHHhcCCHHHHHHHHhhCCCCC-------------hhHHHH-----------------HHHHHHHCCChhHHHHH
Q 010405 82 -----GLVRFGSVDDACRVFNQMPKRS-------------LVSWVV-----------------LISGFAQNGRPKEALAL 126 (511)
Q Consensus 82 -----~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~-----------------li~~~~~~g~~~~A~~~ 126 (511)
.....|+...|..+...+.... +..+.. -+.-+.+ .+.+.|..+
T Consensus 158 ~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar-~d~~~A~~~ 236 (618)
T 1qsa_A 158 LERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVAR-QDAENARLM 236 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHH-HCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHh-cCHHHHHHH
Confidence 3344556666666655552110 000000 1111222 356667777
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 010405 127 FREMQSLDLEPNSAILVSLLSACA----QLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYGD 202 (511)
Q Consensus 127 ~~~m~~~~~~p~~~t~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 202 (511)
|....... ..+......+-...+ ..+...++...+....... .+.....-.+....+.|+++.|...|+.|..
T Consensus 237 ~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~ 313 (618)
T 1qsa_A 237 IPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPM 313 (618)
T ss_dssp HHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCT
T ss_pred HHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccc
Confidence 66665432 223322222222222 2232334444444443332 2222333344444556777777777777765
Q ss_pred CCe--ee-hHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCC-H--
Q 010405 203 KDV--SA-YTSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPE-L-- 276 (511)
Q Consensus 203 ~~~--~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~-- 276 (511)
... .- .-=+..++...|+.++|..+|+.+... . +|-.++.+ .+.|..-. ... ..+.+. .
T Consensus 314 ~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~--~fYg~lAa-~~Lg~~~~-------~~~-~~~~~~~~~~ 378 (618)
T 1qsa_A 314 EAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R--GFYPMVAA-QRIGEEYE-------LKI-DKAPQNVDSA 378 (618)
T ss_dssp TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C--SHHHHHHH-HHTTCCCC-------CCC-CCCCSCCCCH
T ss_pred cccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C--ChHHHHHH-HHcCCCCC-------CCC-CCCChhHHhh
Confidence 321 11 112334556677777777777777531 1 33333321 22221100 000 001110 0
Q ss_pred ---hHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCC---CCchhHHHHHH
Q 010405 277 ---DHYACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQ---NHDGRYILLSN 350 (511)
Q Consensus 277 ---~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p---~~~~~~~~l~~ 350 (511)
.....-+..+...|...+|...+.......+......+.......|..+.++....+....+. .-+..|..++.
T Consensus 379 ~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P~~y~~~i~ 458 (618)
T 1qsa_A 379 LTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPLAYNDLFK 458 (618)
T ss_dssp HHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSCCTTHHHHH
T ss_pred hccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCCcchHHHHH
Confidence 011223456778899998888776652233444444444555677778877766654333210 11235666666
Q ss_pred HHHHcCCchHHHHHHHHHHhCCCcc
Q 010405 351 IYVETLKGENAEEVRKTMRKRKIKR 375 (511)
Q Consensus 351 ~~~~~g~~~~A~~~~~~m~~~g~~~ 375 (511)
-+++.-.++..+-.--...+.+..|
T Consensus 459 ~~a~~~gv~~~ll~Ai~~~ES~f~p 483 (618)
T 1qsa_A 459 RYTSGKEIPQSYAMAIARQESAWNP 483 (618)
T ss_dssp HHHTTSSSCHHHHHHHHHHHHTTCT
T ss_pred HHHHHcCCCHHHHHHHHHHhCCCCC
Confidence 6666666666544333334445444
No 320
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=27.38 E-value=1.9e+02 Score=24.59 Aligned_cols=52 Identities=23% Similarity=0.208 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCC
Q 010405 222 IEAFELFENMKSKGISPD-SISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKP 274 (511)
Q Consensus 222 ~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 274 (511)
+++..+|..|...|+--. +.-|......+...|++.+|..+|..-.+ .+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~-~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKR-MKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCcc
Confidence 355666666666655433 33455555556666677777776666665 44444
No 321
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=26.27 E-value=2.6e+02 Score=22.65 Aligned_cols=28 Identities=7% Similarity=0.008 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 010405 157 YGNWVYSYIQKKCIKLDSILCAALIDMY 184 (511)
Q Consensus 157 ~a~~~~~~~~~~~~~~~~~~~~~li~~y 184 (511)
.+..++..+.+.|+-.|.....+.+...
T Consensus 51 ~ie~vl~~L~~~g~ldD~rfA~~~vr~~ 78 (177)
T 3e3v_A 51 YISEIINKLIDLDLINDKNYAESYVRTM 78 (177)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3444555555665554544444444433
No 322
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=26.10 E-value=1.9e+02 Score=24.39 Aligned_cols=47 Identities=9% Similarity=0.097 Sum_probs=26.6
Q ss_pred HHHHHHHHHHchhhcCCCCCH-hH-----HHHHHHHHHHcCCHHHHHHHHHhC
Q 010405 256 VEKGFYYFHSMFDVHGIKPEL-DH-----YACMVDLLGRAGLLEEAENFIASM 302 (511)
Q Consensus 256 ~~~a~~~~~~~~~~~~~~p~~-~~-----~~~li~~~~~~g~~~~A~~~~~~~ 302 (511)
++.|+.+|+.+.+...+.... .. --..+-.|.+.|.+++|.+++++.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~ 140 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKH 140 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 456677777776643322221 11 112344567778888888877775
No 323
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=25.38 E-value=4.6e+02 Score=25.24 Aligned_cols=37 Identities=14% Similarity=0.003 Sum_probs=22.5
Q ss_pred HHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 010405 165 IQKKCIKLDSILCAALIDMYAKCGSIDLAMQVFHSYG 201 (511)
Q Consensus 165 ~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 201 (511)
+.+.|++--...|.--.+.+...|++++|.++--..+
T Consensus 352 A~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP 388 (494)
T 1bpo_A 352 AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAP 388 (494)
T ss_dssp HHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSG
T ss_pred HHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCc
Confidence 3445555555556556666677777777766655443
No 324
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=25.15 E-value=22 Score=27.52 Aligned_cols=41 Identities=15% Similarity=0.267 Sum_probs=28.8
Q ss_pred CCcEEEec----ccccCcchhhHHHHhhhhcCceEEEeCCCccccccCccccC
Q 010405 459 GSVIRIVK----NIRICSDCHSAMKLVSKVFKRKISIRDRKHYHHFEDGSCSC 507 (511)
Q Consensus 459 ~~~~~~~~----~l~~~~~~~~~~~~~s~~~~~~i~~~d~~~~h~~~~g~~s~ 507 (511)
...+||+. ..++|.+| .+...-..-.++-+||+|+++.|-.
T Consensus 44 ~~~~Riv~~~~~~~~vi~n~--------~i~~~~~y~~~~~~Fh~w~~~~~~~ 88 (130)
T 1qc6_A 44 SSTFRVVGVKLQDQQVVINY--------SIVKGLKYNQATPTFHQWRDARQVY 88 (130)
T ss_dssp TTEEEEEEECTTTCCEEEEE--------ECCTTCEEEEEETTEEEEECSSCEE
T ss_pred CcEEEEEEEeCCCCeEEEee--------EEeCCcEEeccCCeeEEEEcCCEEE
Confidence 45567773 57777776 3444455557899999999998753
No 325
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=24.66 E-value=2.7e+02 Score=22.32 Aligned_cols=54 Identities=6% Similarity=0.056 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHH
Q 010405 122 EALALFREMQSLDLEPN-SAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSI 175 (511)
Q Consensus 122 ~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 175 (511)
++.++|..|...|+--. +.-|......+...|++.+|.++|..-++.+-.|-..
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 36667777777665432 3445566666677777777777777777776665433
No 326
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=24.26 E-value=1.3e+02 Score=22.68 Aligned_cols=43 Identities=12% Similarity=-0.058 Sum_probs=30.0
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010405 126 LFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKK 168 (511)
Q Consensus 126 ~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 168 (511)
+|+.+....+.|+...-..-+..+...++++.|.+++..+...
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 5667766667665554444455567788999999998887764
No 327
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=24.18 E-value=2.4e+02 Score=22.01 Aligned_cols=63 Identities=11% Similarity=0.024 Sum_probs=35.3
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHH
Q 010405 128 REMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDSILCAALIDMYAKCGSID 191 (511)
Q Consensus 128 ~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 191 (511)
+.+.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|.---++.+...|-+.
T Consensus 16 ~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 16 MSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 3455666665443 33455555555556677778877777665555544444456666666543
No 328
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=23.94 E-value=3.1e+02 Score=22.79 Aligned_cols=52 Identities=15% Similarity=0.173 Sum_probs=28.2
Q ss_pred HHHHHHHHHhCCCCCCHH--HHHH-----HHHHHHhcCchhHHHHHHHHHhhcCCCCch
Q 010405 292 LEEAENFIASMPMKPDNV--IWGT-----LLGACRVHRNAEMGQRIGNMLIESDQNHDG 343 (511)
Q Consensus 292 ~~~A~~~~~~~~~~p~~~--~~~~-----ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 343 (511)
++.|+.+++.+...-|.. .... .+..|.+.|.+++|.+++++.....+.+..
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~ 152 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMP 152 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCT
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchH
Confidence 556677777764332211 1122 234588888888888888887776655433
No 329
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=23.85 E-value=18 Score=21.35 Aligned_cols=12 Identities=25% Similarity=0.789 Sum_probs=9.4
Q ss_pred cccccCcchhhH
Q 010405 466 KNIRICSDCHSA 477 (511)
Q Consensus 466 ~~l~~~~~~~~~ 477 (511)
-+.|+|.+|+.-
T Consensus 15 ~~YRvC~~CgkP 26 (44)
T 2lo3_A 15 IQYRVCEKCGKP 26 (44)
T ss_dssp CCEEECTTTCCE
T ss_pred ccchhhcccCCc
Confidence 368999999853
No 330
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=23.54 E-value=4.1e+02 Score=23.94 Aligned_cols=14 Identities=14% Similarity=0.335 Sum_probs=7.2
Q ss_pred HcCCHHHHHHHHHh
Q 010405 288 RAGLLEEAENFIAS 301 (511)
Q Consensus 288 ~~g~~~~A~~~~~~ 301 (511)
+.|+.+-+.-+++.
T Consensus 253 ~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 253 RAAMVLLTKELLQK 266 (364)
T ss_dssp HTCCHHHHHHHHHH
T ss_pred HhChHHHHHHHHHc
Confidence 44555555555544
No 331
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=23.50 E-value=6.9e+02 Score=26.61 Aligned_cols=128 Identities=9% Similarity=-0.024 Sum_probs=75.7
Q ss_pred HHHHHHHcCChHHHHHHHccCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHHCCChhHHH
Q 010405 48 MINGYVRNGEILEGLKLFDKMPQRNDVSWNSILGGLVRFGSVDDACRVFNQMPKR---SLVSWVVLISGFAQNGRPKEAL 124 (511)
Q Consensus 48 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~ 124 (511)
++..+...|.++-|.++...... ++..--.+..+|..+|+.++|...|++.... +....+. .....
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~----------~~~~~ 884 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAV----------LREFQ 884 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGG----------GHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccc----------hhhhh
Confidence 66777888888888887766665 4444445778899999999999999987531 1000000 00111
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH----HHHHHHHHHHHhcC
Q 010405 125 ALFREMQSLDLEPNSAILVSLLSACAQLGALDYGNWVYSYIQKKCIKLDS----ILCAALIDMYAKCG 188 (511)
Q Consensus 125 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~y~~~g 188 (511)
.++..... ......-|..++..+-+.+.++.+.++-+.+++.--+.|. ..|+.+..+++..|
T Consensus 885 ~ll~~~e~--~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 885 EIAEKYHH--QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHTTT--CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hccCcccc--cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 11111100 0112235677777788888888888877777764322232 35666666665544
No 332
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=23.36 E-value=5.3e+02 Score=25.23 Aligned_cols=67 Identities=13% Similarity=-0.013 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHHHhcCchhHHHHH-----HHHHhhcCCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010405 306 PDNVIWGTLLGACRVHRNAEMGQRI-----GNMLIESDQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRK 372 (511)
Q Consensus 306 p~~~~~~~ll~~~~~~g~~~~a~~~-----~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 372 (511)
+|...-..|-.-+..+|..++-+++ ..-+.+..|++......|-..|.+.|++-+|.+++..+...+
T Consensus 176 ~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~ 247 (525)
T 3i5p_A 176 NDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILYRLATSN 247 (525)
T ss_dssp CCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSSS
T ss_pred ChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhCC
Confidence 4555444555556666654433221 111122345555666778888899999999999998888764
No 333
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=22.33 E-value=2.1e+02 Score=20.15 Aligned_cols=35 Identities=20% Similarity=0.093 Sum_probs=24.6
Q ss_pred cCCHHHHHHHHHhcCCCCeeehHHHHHHHHHcCCh
Q 010405 187 CGSIDLAMQVFHSYGDKDVSAYTSAIFGLAMNGHS 221 (511)
Q Consensus 187 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 221 (511)
....++|.++++.+..++..+|..++.++...+..
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~ 83 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYK 83 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCH
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHH
Confidence 45667777777777777777777777777666653
No 334
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=22.29 E-value=1.6e+02 Score=23.03 Aligned_cols=62 Identities=13% Similarity=0.149 Sum_probs=34.9
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhcCCCCCHhHHHHHHHHHHHcCCHH
Q 010405 230 NMKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVHGIKPELDHYACMVDLLGRAGLLE 293 (511)
Q Consensus 230 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 293 (511)
.+.+.|++++..-. .++..+...+..-.|.++++.+.+ .+...+..|.-.-++.+...|-+.
T Consensus 17 ~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~-~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 17 SIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQ-KDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHH-HSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHH-hCCCCCHhhHHHHHHHHHHCCcEE
Confidence 35566766554433 344455555556667777777766 344455555555666777777643
No 335
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=21.22 E-value=3.3e+02 Score=24.55 Aligned_cols=81 Identities=10% Similarity=0.019 Sum_probs=35.9
Q ss_pred HHHHcCCHHHHHHHHHhCC------CC-CCHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCCCchhHHHHHHHHHHcCC
Q 010405 285 LLGRAGLLEEAENFIASMP------MK-PDNVIWGTLLGACRVHRNAEMGQRIGNMLIESDQNHDGRYILLSNIYVETLK 357 (511)
Q Consensus 285 ~~~~~g~~~~A~~~~~~~~------~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 357 (511)
.-+..|+.+-+..+++.-. +. .|..-++.|.. ....|+.+-+..+++.-...+..+..-... +..-+..|+
T Consensus 179 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~-A~~~g~~~~v~~Ll~~gad~~~~d~~g~tp-L~~A~~~g~ 256 (364)
T 3ljn_A 179 RAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHW-AILINWEDVAMRFVEMGIDVNMEDNEHTVP-LYLSVRAAM 256 (364)
T ss_dssp HHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHH-HHTTTCHHHHHHHHTTTCCTTCCCTTSCCH-HHHHHHTCC
T ss_pred HHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHH-HHHcCCHHHHHHHHHcCCCCCCCCCCCCCH-HHHHHHhCh
Confidence 3445677777666666431 11 12222233333 335566655544444322222222111112 223345677
Q ss_pred chHHHHHHHH
Q 010405 358 GENAEEVRKT 367 (511)
Q Consensus 358 ~~~A~~~~~~ 367 (511)
.+-+.-+++.
T Consensus 257 ~~~v~~Ll~~ 266 (364)
T 3ljn_A 257 VLLTKELLQK 266 (364)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 6666666654
No 336
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=21.01 E-value=2.4e+02 Score=24.88 Aligned_cols=195 Identities=11% Similarity=-0.008 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHH-------------HHHHhccCCHHHHHHHHHHchhhcCCCCC
Q 010405 209 TSAIFGLAMNGHSIEAFELFENMKSKGISPDSISYIAV-------------LSACSHLGWVEKGFYYFHSMFDVHGIKPE 275 (511)
Q Consensus 209 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-------------l~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 275 (511)
|.++..|...|+...|.++++++....+.--...|... +.-+..-..+-+|..-|........-.|.
T Consensus 38 n~l~R~FL~~gkl~AAr~l~~rlp~~~i~~~~~~~~~~~~~~~~~~~~~~ai~E~~~~~~~l~a~~~~~~W~~~~~~~p~ 117 (270)
T 3cqc_A 38 NAIMRKFLASKKHEAAKEVFVKIPQDSIAEIYNQCEEQGMESPLPAEDDNAIREHLCIRAYLEAHETFNEWFKHMNSVPQ 117 (270)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHSCTTHHHHHC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHCChHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Q ss_pred HhH------HHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH------------HhcCchhHHHHHHHHHhhc
Q 010405 276 LDH------YACMVDLLGRAGLLEEAENFIASMPMKPDNVIWGTLLGAC------------RVHRNAEMGQRIGNMLIES 337 (511)
Q Consensus 276 ~~~------~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~------------~~~g~~~~a~~~~~~~~~~ 337 (511)
... +..-+....+.+.+..-...++.....-...+...+...+ .....-+.=..-++.+++.
T Consensus 118 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~W~~~l~~~~~~a~~~l~~vL~f~~~gWL~~~~~d~~~~~~r~~ql~~iR~~ 197 (270)
T 3cqc_A 118 KPALIPQPTFTEKVAHEHKEKKYEMDFGIWKGHLDALTADVKEKMYNVLLFVDGGWMVDVREDAKEDHERTHQMVLLRKL 197 (270)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTCTTCCSCCCSCCCHHHHHHHHHHHHH
T ss_pred CCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCccccccchhHHHHHHHHHHH
Q ss_pred CCCCchhHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHH
Q 010405 338 DQNHDGRYILLSNIYVETLKGENAEEVRKTMRKRKIKRAPGCSLIELDGVVHEFLAGDRSHEKTQEIYQFWEEIVKKIKN 417 (511)
Q Consensus 338 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~ 417 (511)
-- |.....|..++..+|++.++.++-..+.+...+ +...-..++.++....+.+....|.+
T Consensus 198 yI--Pelvl~Lh~vl~~a~~~~~~~~LA~~VA~e~~~-----------------ly~~F~k~rL~Ell~~ia~sSl~ll~ 258 (270)
T 3cqc_A 198 CL--PMLCFLLHTILHSTGQYQECLQLADMVSSERHK-----------------LYLVFSKEELRKLLQKLRESSLMLLD 258 (270)
T ss_dssp HH--HHHHHHHHHHHHHTTCHHHHHTHHHHHHCTTTC-----------------GGGGSCHHHHHHHHHHHHHHHHHHHT
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc-----------------HHHHhhHHHHHHHHHHHHHHHHHHHh
Q ss_pred cCccc
Q 010405 418 YGYNV 422 (511)
Q Consensus 418 ~g~~p 422 (511)
.|..|
T Consensus 259 ~~~dp 263 (270)
T 3cqc_A 259 QGLDP 263 (270)
T ss_dssp TTBCT
T ss_pred CCCCC
No 337
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=20.73 E-value=1.4e+02 Score=23.91 Aligned_cols=71 Identities=11% Similarity=0.110 Sum_probs=43.9
Q ss_pred HHHHHHHHH-HHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHchhhc-CCCCCHhHHHHHHHHHHHcCCHH
Q 010405 222 IEAFELFEN-MKSKGISPDSISYIAVLSACSHLGWVEKGFYYFHSMFDVH-GIKPELDHYACMVDLLGRAGLLE 293 (511)
Q Consensus 222 ~~A~~~~~~-m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~ 293 (511)
+.+++-+.+ +.+.|++++..- ..++..+...+..-.|.++++.+.+.. +...+..|.-.-++.+...|-+.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 344444444 345677776544 345666666667778888888887620 34445555555667788888653
No 338
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=20.43 E-value=1.6e+02 Score=20.84 Aligned_cols=38 Identities=16% Similarity=0.155 Sum_probs=26.0
Q ss_pred cCCHHHHHHHHhhCCCCChhHHHHHHHHHHHCCChhHH
Q 010405 86 FGSVDDACRVFNQMPKRSLVSWVVLISGFAQNGRPKEA 123 (511)
Q Consensus 86 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 123 (511)
....+.|..+++.++.++..+|..++.++.+.+...-|
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 45566777777777777777777777777776654443
Done!