BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010406
(511 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|296086508|emb|CBI32097.3| unnamed protein product [Vitis vinifera]
Length = 547
Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/550 (65%), Positives = 420/550 (76%), Gaps = 42/550 (7%)
Query: 1 MAPKTTRKPTPALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTH 60
MAPK + P D NG+FAGM VFLVE GVQ RRL+IW+QKLVQMGAT+ ++LSK+V+H
Sbjct: 1 MAPKAKKSRAPTSDPNGMFAGMVVFLVEYGVQTRRLEIWKQKLVQMGATIADRLSKRVSH 60
Query: 61 VLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPE---GENI 117
V A++ +ALL+QV ++HL RF+G+V++YQWLEDSLRLGEK+SED Y +K D E G
Sbjct: 61 VFAVNRDALLRQVGREHLERFQGNVLQYQWLEDSLRLGEKISEDSYNLKFDSEVQDGPGN 120
Query: 118 ADRVLSQIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSE 177
+ Q N+ DG + K++KSS E ++ ES+ + + E ++ S+
Sbjct: 121 TSEIFPQPSQLNNSREDG-APQNKRMKSSPE--KNMNEESRENKRNSTAHETSDTVQGSD 177
Query: 178 SLTNTLSTASASPDFSSHHIT---------DPSLLYNPPDLNKNITEIFGKLINIYRALG 228
T S ++ + + + T D SL Y+PPDLNKNITEIFGKLINIYRALG
Sbjct: 178 ESFRTPSPENSGSNTLAEYFTISFNQVGTLDSSLPYSPPDLNKNITEIFGKLINIYRALG 237
Query: 229 EDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKD 288
+DRRSFSY+KAI VIEKLPFKIESADQVK LP IGKSMQDHIQEIVTTGKLSKLEHFE D
Sbjct: 238 DDRRSFSYHKAIGVIEKLPFKIESADQVKDLPTIGKSMQDHIQEIVTTGKLSKLEHFETD 297
Query: 289 EKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPR 348
EKVRTI+LFGEVWGIGPATA KLYEKG+RTLDDLKNEDSLT++Q+LGLKYFDDIK R+PR
Sbjct: 298 EKVRTINLFGEVWGIGPATALKLYEKGYRTLDDLKNEDSLTNAQKLGLKYFDDIKKRVPR 357
Query: 349 HEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVK 408
HEV++ME LLQKAGEEVLP V I+CGGSYRRGKASCGDLD++I HPD KSH+GFL +YVK
Sbjct: 358 HEVQEMELLLQKAGEEVLPGVSIVCGGSYRRGKASCGDLDIIITHPDGKSHRGFLPRYVK 417
Query: 409 KLKEMKFLREDLIFSTHSEE---------------------------VYPRDIYAFGLIA 441
LK+MKFLREDLIFSTHSEE VYPR+IYAFGLIA
Sbjct: 418 HLKDMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPARELRHRIDLKVYPRNIYAFGLIA 477
Query: 442 WTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGF 501
WTGNDVLNRRLR+LAESKGYRLDDTGLF AT GSGGK+G RA TSL F TE+EVF+FLGF
Sbjct: 478 WTGNDVLNRRLRILAESKGYRLDDTGLFLATQGSGGKRGSRATTSLSFRTEQEVFEFLGF 537
Query: 502 PWLEPHERNL 511
PWLEPHERNL
Sbjct: 538 PWLEPHERNL 547
>gi|359473414|ref|XP_002266446.2| PREDICTED: DNA polymerase lambda-like [Vitis vinifera]
Length = 543
Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/547 (65%), Positives = 420/547 (76%), Gaps = 40/547 (7%)
Query: 1 MAPKTTRKPTPALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTH 60
MAPK + P D NG+FAGM VFLVE GVQ RRL+IW+QKLVQMGAT+ ++LSK+V+H
Sbjct: 1 MAPKAKKSRAPTSDPNGMFAGMVVFLVEYGVQTRRLEIWKQKLVQMGATIADRLSKRVSH 60
Query: 61 VLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPE---GENI 117
V A++ +ALL+QV ++HL RF+G+V++YQWLEDSLRLGEK+SED Y +K D E G
Sbjct: 61 VFAVNRDALLRQVGREHLERFQGNVLQYQWLEDSLRLGEKISEDSYNLKFDSEVQDGPGN 120
Query: 118 ADRVLSQIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSE 177
+ Q N+ DG + K++KSS E ++ ES+ + + E ++ S+
Sbjct: 121 TSEIFPQPSQLNNSREDG-APQNKRMKSSPE--KNMNEESRENKRNSTAHETSDTVQGSD 177
Query: 178 ------SLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDR 231
S N+ S P+ + + D SL Y+PPDLNKNITEIFGKLINIYRALG+DR
Sbjct: 178 ESFRTPSPENSGSNTLGDPNKAVGTL-DSSLPYSPPDLNKNITEIFGKLINIYRALGDDR 236
Query: 232 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
RSFSY+KAI VIEKLPFKIESADQVK LP IGKSMQDHIQEIVTTGKLSKLEHFE DEKV
Sbjct: 237 RSFSYHKAIGVIEKLPFKIESADQVKDLPTIGKSMQDHIQEIVTTGKLSKLEHFETDEKV 296
Query: 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEV 351
RTI+LFGEVWGIGPATA KLYEKG+RTLDDLKNEDSLT++Q+LGLKYFDDIK R+PRHEV
Sbjct: 297 RTINLFGEVWGIGPATALKLYEKGYRTLDDLKNEDSLTNAQKLGLKYFDDIKKRVPRHEV 356
Query: 352 EQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLK 411
++ME LLQKAGEEVLP V I+CGGSYRRGKASCGDLD++I HPD KSH+GFL +YVK LK
Sbjct: 357 QEMELLLQKAGEEVLPGVSIVCGGSYRRGKASCGDLDIIITHPDGKSHRGFLPRYVKHLK 416
Query: 412 EMKFLREDLIFSTHSEE---------------------------VYPRDIYAFGLIAWTG 444
+MKFLREDLIFSTHSEE VYPR+IYAFGLIAWTG
Sbjct: 417 DMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPARELRHRIDLKVYPRNIYAFGLIAWTG 476
Query: 445 NDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWL 504
NDVLNRRLR+LAESKGYRLDDTGLF AT GSGGK+G RA TSL F TE+EVF+FLGFPWL
Sbjct: 477 NDVLNRRLRILAESKGYRLDDTGLFLATQGSGGKRGSRATTSLSFRTEQEVFEFLGFPWL 536
Query: 505 EPHERNL 511
EPHERNL
Sbjct: 537 EPHERNL 543
>gi|224108111|ref|XP_002314725.1| predicted protein [Populus trichocarpa]
gi|222863765|gb|EEF00896.1| predicted protein [Populus trichocarpa]
Length = 508
Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/548 (69%), Positives = 414/548 (75%), Gaps = 77/548 (14%)
Query: 1 MAPKTTRKPTPALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTH 60
MAPK RK +P++D GIF+GM VFLVE GVQ+RRLQIW+QKLVQMGAT EE+LSKKVTH
Sbjct: 1 MAPK--RKKSPSIDPQGIFSGMVVFLVETGVQSRRLQIWKQKLVQMGATTEERLSKKVTH 58
Query: 61 VLAMDLEALLQQVSKQHLARFKGS---------VIRYQWLEDSLRLGEKVSEDLYRIKLD 111
V A++ +ALLQQ+ Q L RFK V+ YQWLEDSLR GEKVSED Y + +D
Sbjct: 59 VFAINSQALLQQLDGQLLKRFKPKRDFPFFCLRVLLYQWLEDSLRSGEKVSEDQYHLLVD 118
Query: 112 PEGENIADRVLSQIQGNGNTSSDGE-SSHRKKIKSSTEDVEHFQAESKGDVETNALSEAP 170
EGEN D+ L N NTSS E S H +KIKS DV+ F K D E LSE
Sbjct: 119 MEGENTKDKSLVLKLVNENTSSADELSPHNEKIKS---DVKKF----KSDAENKGLSEL- 170
Query: 171 NSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGED 230
SL Y+PPDLN++ITEIFGKLINIYRALG+D
Sbjct: 171 ------------------------------SLPYSPPDLNRSITEIFGKLINIYRALGDD 200
Query: 231 RRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEK 290
RRSFSYYKAIPV+EKLPFKIESADQVK LPGIGKSMQDHIQEIVTTGKLSKLEHFE DEK
Sbjct: 201 RRSFSYYKAIPVVEKLPFKIESADQVKDLPGIGKSMQDHIQEIVTTGKLSKLEHFETDEK 260
Query: 291 VRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHE 350
VRTISLFGEVWGIGPATA K YEKGHRTL+DLKNEDSLTHSQ+LGLKYFDDIKTRIPRHE
Sbjct: 261 VRTISLFGEVWGIGPATALKFYEKGHRTLEDLKNEDSLTHSQKLGLKYFDDIKTRIPRHE 320
Query: 351 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 410
V++ME LLQK GEE+LP V ILCGGSYRRGKASCGDLD+VI HPD KSHKGFL++YVK+L
Sbjct: 321 VQEMELLLQKTGEEILPGVDILCGGSYRRGKASCGDLDIVITHPDGKSHKGFLTRYVKRL 380
Query: 411 KEMKFLREDLIFSTHSEE---------------------------VYPRDIYAFGLIAWT 443
K+MKFLREDLIFSTHSEE VYPRDIYAFGL+AWT
Sbjct: 381 KDMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLVAWT 440
Query: 444 GNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPW 503
GNDVLNRRLRLLAESKGYRLDDTGLFPAT SGGK+G RA SL+FD EKEVFDFLGFPW
Sbjct: 441 GNDVLNRRLRLLAESKGYRLDDTGLFPATQASGGKRGARASASLRFDNEKEVFDFLGFPW 500
Query: 504 LEPHERNL 511
LEPHERNL
Sbjct: 501 LEPHERNL 508
>gi|356502249|ref|XP_003519932.1| PREDICTED: DNA polymerase lambda-like [Glycine max]
Length = 534
Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/538 (63%), Positives = 406/538 (75%), Gaps = 31/538 (5%)
Query: 1 MAPKTTRKPTPALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTH 60
MAPK P D +G+F+GM VFLV KGVQ+RR QIW+++LVQMGA +EE+ SK+VTH
Sbjct: 1 MAPKKK----PESDPHGMFSGMVVFLVPKGVQSRRFQIWKERLVQMGAVIEERFSKRVTH 56
Query: 61 VLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADR 120
V AM +ALLQQ+ ++ L+RFKG V+ YQWLED L+ GE +SED+Y +KLD +GE+I ++
Sbjct: 57 VFAMHSDALLQQLDRERLSRFKGRVLLYQWLEDCLKSGEILSEDMYLLKLDSQGEHIPEK 116
Query: 121 VLSQIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLT 180
L N TSSD + KK K STED + + ES D + S +SS
Sbjct: 117 SLDPGLTNQRTSSDLQQLLNKKSKLSTEDTKIVKNESHDDDGKEKAVFSSTSTISSHGEV 176
Query: 181 NTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAI 240
++LS + SL Y+PPDLNKNITEIFGKL+NIYRALG+DRRSFSY+KAI
Sbjct: 177 DSLSYGNTRQQHLDAENEASSLSYHPPDLNKNITEIFGKLVNIYRALGDDRRSFSYHKAI 236
Query: 241 PVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEV 300
VIEKLPFKIES DQ+ LP IGKSM+DH+QEI+TTGKLSKLEHFE DEKVRTISLFGEV
Sbjct: 237 AVIEKLPFKIESTDQINNLPSIGKSMKDHVQEIMTTGKLSKLEHFETDEKVRTISLFGEV 296
Query: 301 WGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQK 360
WGIGP+TA KLYEKGHR+LDDL+N+DSLT++Q+LGLKYFDDI RIPRHE ++ME +LQK
Sbjct: 297 WGIGPSTALKLYEKGHRSLDDLRNDDSLTNAQKLGLKYFDDIGQRIPRHEAQEMEHILQK 356
Query: 361 AGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDL 420
GE+VLP V+I+CGGSYRRGKA+CGD+D++I HPD KSHKGFL K+VK LK+M FLREDL
Sbjct: 357 VGEDVLPGVVIICGGSYRRGKATCGDIDIIITHPDGKSHKGFLPKFVKHLKDMNFLREDL 416
Query: 421 IFSTHSEE---------------------------VYPRDIYAFGLIAWTGNDVLNRRLR 453
IFS+HSEE VYPRDIYAFGL+AWTGNDVLNRRLR
Sbjct: 417 IFSSHSEEATDSGVDTYFGFCTYPGRELRHRIDLKVYPRDIYAFGLVAWTGNDVLNRRLR 476
Query: 454 LLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 511
L AESKG+RLDDTGLFPAT GSGGK+G + SLKF+TEKE+FDFL FP LEPHERNL
Sbjct: 477 LQAESKGFRLDDTGLFPATQGSGGKRGAKGSASLKFNTEKEIFDFLDFPCLEPHERNL 534
>gi|30681747|ref|NP_172522.2| DNA polymerase lambda subunit [Arabidopsis thaliana]
gi|12053869|emb|CAC21394.1| DNA polymerase lambda [Arabidopsis thaliana]
gi|91805767|gb|ABE65612.1| DNA polymerase lambda [Arabidopsis thaliana]
gi|304440990|gb|ADM33939.1| DNA pol lambda [Arabidopsis thaliana]
gi|332190467|gb|AEE28588.1| DNA polymerase lambda subunit [Arabidopsis thaliana]
Length = 529
Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/539 (63%), Positives = 407/539 (75%), Gaps = 38/539 (7%)
Query: 1 MAPKTTRKPTPALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEE-KLSKKVT 59
MA K R +P+ D G+FAGM VF+VE GVQ RRLQIW+QKLVQMGA +EE +++KKVT
Sbjct: 1 MAAKRGRNRSPSPDPEGMFAGMVVFMVEIGVQRRRLQIWKQKLVQMGAVIEEDRVTKKVT 60
Query: 60 HVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIAD 119
HVLAM+LEALL + K+ L+ F ++ YQWLEDSL GEK +EDLY +K+D E +
Sbjct: 61 HVLAMNLEALLHKFGKERLSHFTARLMLYQWLEDSLTSGEKANEDLYVLKIDSEEVDKPK 120
Query: 120 RVLSQIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESL 179
+ L I G S+ +SS +K+ + S + + ES + + +P+SP S
Sbjct: 121 KSLPAISG-----SEDQSSPQKRTRYSPDAGDFKGVESHSNTQG-----SPDSPTSCSVP 170
Query: 180 TNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKA 239
+ + S + + ++ + +Y PPDLN+NITEIFGKLINIYRALGEDRRSFSYYKA
Sbjct: 171 STSASPGEGIAETPTSPQSESTSVYKPPDLNRNITEIFGKLINIYRALGEDRRSFSYYKA 230
Query: 240 IPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGE 299
IPVIEK P +IES DQ+K LPGIGK+M+DHIQEIVTTGKLSKLEHFE DEKVRTISLFGE
Sbjct: 231 IPVIEKFPTRIESVDQLKHLPGIGKAMRDHIQEIVTTGKLSKLEHFETDEKVRTISLFGE 290
Query: 300 VWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQ 359
VWG+GPATA KLYEKGHRTL+DLKNEDSLTH+Q+LGLKYFDDIKTRIPR EV++ME+LLQ
Sbjct: 291 VWGVGPATALKLYEKGHRTLEDLKNEDSLTHAQKLGLKYFDDIKTRIPRQEVQEMEQLLQ 350
Query: 360 KAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLRED 419
+ GEE LP V I+CGGSYRRGKA+CGDLD+V+ HPD +SHKGFL+K+VK+LKEM FLRED
Sbjct: 351 RVGEETLPGVNIVCGGSYRRGKATCGDLDIVVTHPDGQSHKGFLTKFVKRLKEMNFLRED 410
Query: 420 LIFSTHSEE---------------------------VYPRDIYAFGLIAWTGNDVLNRRL 452
LIFSTHSEE VYPRDIY+FGLIAWTGNDVLNRRL
Sbjct: 411 LIFSTHSEEGTDSGVDTYFGLCTYPGQELRRRIDFKVYPRDIYSFGLIAWTGNDVLNRRL 470
Query: 453 RLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 511
RLLAESKGYRLDDTGLFPAT+ S G +G R SLK TEK+VFDFLGFPWLEPHERNL
Sbjct: 471 RLLAESKGYRLDDTGLFPATHSSSGNRGARGTASLKLSTEKQVFDFLGFPWLEPHERNL 529
>gi|449435380|ref|XP_004135473.1| PREDICTED: DNA polymerase lambda-like [Cucumis sativus]
Length = 521
Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/541 (64%), Positives = 408/541 (75%), Gaps = 50/541 (9%)
Query: 1 MAPKTTRKPTPALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTH 60
MAPK + + + D +G+FAGM VFLVEKGVQ RRLQIW+QKLVQMGA++EE+LSK V+H
Sbjct: 1 MAPKRRKSQSLSEDPHGMFAGMVVFLVEKGVQTRRLQIWKQKLVQMGASIEERLSKMVSH 60
Query: 61 VLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIK--LDPEGENIA 118
+ A L+ALL++V LARFKG V+ YQWLEDSL GEK SEDLY +K LD +G +
Sbjct: 61 IFASSLDALLEKVDGARLARFKGKVLSYQWLEDSLSSGEKASEDLYTVKVGLDEDGRDKP 120
Query: 119 DRVLSQIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSES 178
+ S KK+ S + E ES GD + + L + +
Sbjct: 121 -----------------QQSTPKKLNLSPNNSEAVSFESGGDSDASTLVTKTATGLEDSK 163
Query: 179 LT-NTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYY 237
L+ T+ + DF ++I +L Y+PPD+NKNITEIFGKLINIYRALG++RRSFSYY
Sbjct: 164 LSIGQTVTSPRTSDFVGNNI---ALSYSPPDMNKNITEIFGKLINIYRALGDERRSFSYY 220
Query: 238 KAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLF 297
KAIPVIEKLPF+IES DQVK LP IGKS+QDHIQEIVTTGKLSKLEHFE DEKVRTISLF
Sbjct: 221 KAIPVIEKLPFRIESIDQVKHLPAIGKSLQDHIQEIVTTGKLSKLEHFETDEKVRTISLF 280
Query: 298 GEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERL 357
GEVWGIGPATA +LYEKG+RTLDDL+ E+SLTH+Q+LGLKYFDDIK RIPR+EV+ ME L
Sbjct: 281 GEVWGIGPATALRLYEKGYRTLDDLQKEESLTHAQKLGLKYFDDIKQRIPRNEVQDMESL 340
Query: 358 LQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLR 417
L+KAGE+VLP V ILCGGS+RRGK+SCGD+D+VI HPD KSH+GFL KYVK LK+MKFLR
Sbjct: 341 LKKAGEDVLPGVDILCGGSFRRGKSSCGDMDIVITHPDGKSHRGFLPKYVKHLKDMKFLR 400
Query: 418 EDLIFSTHSEE---------------------------VYPRDIYAFGLIAWTGNDVLNR 450
EDLIFSTHSEE VYPRDIYAFGLIAWTGNDVLNR
Sbjct: 401 EDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDLKVYPRDIYAFGLIAWTGNDVLNR 460
Query: 451 RLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
RLRLLAESKG+RLDDTGL+P+T GSGGK+G R +LKFDTEK+VF+FLGFPWLEPHERN
Sbjct: 461 RLRLLAESKGFRLDDTGLYPSTQGSGGKRGARGTATLKFDTEKDVFEFLGFPWLEPHERN 520
Query: 511 L 511
L
Sbjct: 521 L 521
>gi|357486897|ref|XP_003613736.1| DNA polymerase beta [Medicago truncatula]
gi|355515071|gb|AES96694.1| DNA polymerase beta [Medicago truncatula]
Length = 531
Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/527 (63%), Positives = 396/527 (75%), Gaps = 30/527 (5%)
Query: 14 DSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQV 73
+ NG+F+GM VF V KGVQ RRLQIW+Q++VQMGA +E++ SK+VTHV A+D LL +
Sbjct: 6 EQNGMFSGMVVFFVSKGVQARRLQIWKQRMVQMGAVIEDRFSKRVTHVFAVDSHTLLHEF 65
Query: 74 SKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENI--ADRVLSQIQGNGNT 131
Q L+RFKGS++ YQWLEDSL+ GEK SEDLY +KLDP+GE I D L +G+
Sbjct: 66 DSQRLSRFKGSLLLYQWLEDSLKSGEKESEDLYVLKLDPQGEGINEIDTSLDPEPIDGSL 125
Query: 132 SSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPD 191
SS+ + KKIKSS+ED E +S D NA N+ SS L+ + P
Sbjct: 126 SSEPQQLQNKKIKSSSEDAEIVNLKSNEDRRENAPLSLANTA-SSHGEVEHLNCVDSRPQ 184
Query: 192 FSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE 251
SL Y PPDLNK I EIFGKL+NIYRALGEDRRSFSYYKAI VIEKLPFKIE
Sbjct: 185 HLDSENAASSLPYCPPDLNKKIIEIFGKLVNIYRALGEDRRSFSYYKAISVIEKLPFKIE 244
Query: 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 311
SADQ+K LP IGKSM+DHIQEI+TTGKLSKLEHFE DEKV+TISLFGEVWGIGPATA KL
Sbjct: 245 SADQIKNLPSIGKSMEDHIQEIITTGKLSKLEHFETDEKVQTISLFGEVWGIGPATALKL 304
Query: 312 YEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII 371
YEKGHRTLDDL+N+DSLT++Q+LGLKYFDDI+ RIPRHEV++ME++LQK G VLP V I
Sbjct: 305 YEKGHRTLDDLRNDDSLTNAQKLGLKYFDDIRHRIPRHEVQEMEQILQKVGGNVLPGVTI 364
Query: 372 LCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE--- 428
+CGGSYRRGKA+CGD+D+++ HPD SHKGFL K+VK+LK+M FLREDLI+STHSEE
Sbjct: 365 ICGGSYRRGKATCGDIDIIVTHPDGTSHKGFLPKFVKRLKDMSFLREDLIYSTHSEEGTD 424
Query: 429 ------------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLD 464
VYPR+IYAFGL+AWTGNDVLNRRLR AESKG+RLD
Sbjct: 425 SGVDTYFGFCTYPGRELRHRIDLKVYPREIYAFGLVAWTGNDVLNRRLRQQAESKGFRLD 484
Query: 465 DTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 511
DTGLFPA GSGGK+G + ++K TEKEVF+FLGFPWLEPHERNL
Sbjct: 485 DTGLFPAIQGSGGKRGTKGTANMKLYTEKEVFEFLGFPWLEPHERNL 531
>gi|297843866|ref|XP_002889814.1| DNA polymerase lambda [Arabidopsis lyrata subsp. lyrata]
gi|297335656|gb|EFH66073.1| DNA polymerase lambda [Arabidopsis lyrata subsp. lyrata]
Length = 529
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/543 (63%), Positives = 403/543 (74%), Gaps = 46/543 (8%)
Query: 1 MAPKTTRKPTPALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVE-EKLSKKVT 59
MA K R +P+ D G+FAGM VF+VE GVQ RR QIW+QKLVQMGA +E ++++KKVT
Sbjct: 1 MAAKRGRNRSPSPDPEGMFAGMVVFMVEIGVQRRRFQIWKQKLVQMGAVIEKDRVTKKVT 60
Query: 60 HVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIAD 119
HVLAM+L+ALL + K+ L+ F+G ++ YQWLEDSL GEK +EDLY + +D E +
Sbjct: 61 HVLAMNLDALLDKFGKERLSHFRGRLMLYQWLEDSLTAGEKANEDLYALNIDSEEVEEPN 120
Query: 120 RVLSQIQGNGNTSSDGESSH-RKKIKSSTEDVEHFQAESKGDVETNALSEAPNS---PMS 175
+ L I G S D S H R + D + +++S T ++P S P +
Sbjct: 121 KSLPAISG----SEDLPSPHKRTRYLPDAADFKGVESQSN----TQGSLDSPTSCSVPST 172
Query: 176 SESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFS 235
S S + ++ SP S + Y PPDLN+NITEIFGKLINIYRALGEDRRSFS
Sbjct: 173 SASPGDGIAETPTSPQSESTSV------YKPPDLNRNITEIFGKLINIYRALGEDRRSFS 226
Query: 236 YYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTIS 295
YYKAIPVIEK P KIES DQ+K LPGIGKSM+DHIQEIVTTGKLSKLEHFE DEKVRTIS
Sbjct: 227 YYKAIPVIEKFPTKIESIDQLKHLPGIGKSMRDHIQEIVTTGKLSKLEHFETDEKVRTIS 286
Query: 296 LFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQME 355
LFGEVWGIGPATA KLY+KGHRTL+DLKNEDSLTH+QRLGLKYFDDI+TRI RHEV++ME
Sbjct: 287 LFGEVWGIGPATALKLYDKGHRTLEDLKNEDSLTHAQRLGLKYFDDIRTRILRHEVQEME 346
Query: 356 RLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKF 415
+LLQ+ GEE LP V I+CGGSYRRGKA+CGDLD+VI HPD +SHKGFL+K+VK+LKE+ F
Sbjct: 347 QLLQRVGEETLPGVNIVCGGSYRRGKATCGDLDIVITHPDGQSHKGFLTKFVKRLKEINF 406
Query: 416 LREDLIFSTHSEE---------------------------VYPRDIYAFGLIAWTGNDVL 448
LREDLIFSTHSEE VYPRDIYAFGLIAWTGNDVL
Sbjct: 407 LREDLIFSTHSEEGTDSGVDTYFGLCTYPGQELRRRIDFKVYPRDIYAFGLIAWTGNDVL 466
Query: 449 NRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHE 508
NRRLRLLAESKGYRLDDTGLFPAT+ S G +G R SLK TEK+VFDFLGFPWLEP E
Sbjct: 467 NRRLRLLAESKGYRLDDTGLFPATHSSSGNRGARGTASLKLSTEKQVFDFLGFPWLEPQE 526
Query: 509 RNL 511
RNL
Sbjct: 527 RNL 529
>gi|357124685|ref|XP_003564028.1| PREDICTED: DNA polymerase lambda-like [Brachypodium distachyon]
Length = 552
Score = 583 bits (1504), Expect = e-164, Method: Compositional matrix adjust.
Identities = 305/562 (54%), Positives = 385/562 (68%), Gaps = 61/562 (10%)
Query: 1 MAPKTTRKPTPALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKK--- 57
MAPK + PA D GIF G+ F V VQ+ RL++W+QKLVQMG V+EK++
Sbjct: 1 MAPKRRKPARPASDPEGIFGGVSAFFVPHSVQSHRLEVWKQKLVQMGGRVQEKVANAKGV 60
Query: 58 -VTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGEN 116
V HVLA D +ALL+++ L RF+GSV+ ++W+E+ L+ GE++ E + I + E +
Sbjct: 61 TVNHVLAADAKALLRELDAAWLHRFRGSVVSFEWMEECLKSGERLPEHKFTINYEEEFKP 120
Query: 117 IADRVLSQIQGNGNTSSDGESSHRKKIKSSTED-----------------VEHFQAESKG 159
+ G G+T G S K+ K S+ED V Q S
Sbjct: 121 ------KKAAGTGHT---GASRPPKRSKMSSEDHGKRKETIVQDGEKELAVGEHQDASTH 171
Query: 160 DVETNALSEAPNSPMSSESLT-NTLSTASASPDFSSHHIT--DPSLLYNPPDLNKNITEI 216
E + + + + + S+S + +T+ T + F + +P+ Y PPDLN+NITE+
Sbjct: 172 AREGSGVDKGRSQYVCSQSSSGDTMDTIGSHGTFDIEEASSVEPTT-YAPPDLNRNITEV 230
Query: 217 FGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT 276
FGKLINIYRALG+ RRSFSYYKAIPVIEKLPFK+ESADQVK LP IGKS++DHI EIVTT
Sbjct: 231 FGKLINIYRALGDGRRSFSYYKAIPVIEKLPFKVESADQVKDLPAIGKSLKDHINEIVTT 290
Query: 277 GKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGL 336
GKLSKLEHFE DEK RT+SLFGEVWG+GPATA KLY+KGHRTL+DL+ +DSLT++QR GL
Sbjct: 291 GKLSKLEHFENDEKARTVSLFGEVWGVGPATALKLYDKGHRTLEDLRKDDSLTYAQRTGL 350
Query: 337 KYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDR 396
K+FDDIK RIPRHEV +ME+LLQ G+++LP V I+CGGSYRRGKASCGD+D+VI HPD
Sbjct: 351 KFFDDIKQRIPRHEVSEMEKLLQDVGKDILPGVTIVCGGSYRRGKASCGDMDIVITHPDG 410
Query: 397 KSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE---------------------------V 429
+SH GFL K+V++LK++ FLREDLIFS HS E V
Sbjct: 411 ESHVGFLPKFVQRLKDISFLREDLIFSIHSIEGTDCGVDTYFGLCTYPGRELRHRIDLKV 470
Query: 430 YPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKF 489
YPR+ YAFGL+AWTGNDVLNRRLR+LA+SKGY LDDTGL+ AT SGGK+ R+ +
Sbjct: 471 YPRNRYAFGLLAWTGNDVLNRRLRILADSKGYALDDTGLYLATLSSGGKRMGRSEAIVNC 530
Query: 490 DTEKEVFDFLGFPWLEPHERNL 511
DTEK+VFD LGFPWLEPHERNL
Sbjct: 531 DTEKDVFDTLGFPWLEPHERNL 552
>gi|47232548|dbj|BAD18976.1| DNA polymerase lambda [Oryza sativa Japonica Group]
Length = 552
Score = 572 bits (1474), Expect = e-160, Method: Compositional matrix adjust.
Identities = 304/539 (56%), Positives = 385/539 (71%), Gaps = 45/539 (8%)
Query: 13 LDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKK-----VTHVLAMDLE 67
LD +G+F G+ F+V VQ+RRL++W+Q+L QMG V+EKL+ K VTHVLA D +
Sbjct: 19 LDPDGMFRGVSAFVVPHAVQSRRLEVWKQRLAQMGGRVQEKLAAKGGGGAVTHVLAADAK 78
Query: 68 ALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRI------KLDPEGENIADRV 121
ALL+++ L RF+GSV+ ++WLE+ L+ GE++ E + I K EG V
Sbjct: 79 ALLRELDAAWLHRFRGSVVSFEWLEECLKSGERLPEHKFAINYEEEFKPKKEGGAAGSGV 138
Query: 122 LSQIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLT- 180
L Q SSDG + ++ + E + + E + + + P++ SS+S +
Sbjct: 139 L-QSAKRSKISSDGPENRKETAGGNRESRDAIAHPN----EDSDVVKGPSTCTSSQSASG 193
Query: 181 NTLSTASASPDFSSHHITD-PSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKA 239
++ T ++ F + + S Y PPDLN+NITEIFGKLINIYRALG+DRRSFSYYKA
Sbjct: 194 DSKETIASQNAFKAEEASSGESSTYAPPDLNRNITEIFGKLINIYRALGDDRRSFSYYKA 253
Query: 240 IPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGE 299
IPVIEKLPFKIESADQVK LP IGKS++DHI EIV TGKLSKLEHFE DEKVRT+SLFGE
Sbjct: 254 IPVIEKLPFKIESADQVKDLPAIGKSLKDHINEIVNTGKLSKLEHFENDEKVRTVSLFGE 313
Query: 300 VWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQ 359
VWG+GPATA KLY+KGHRTLDDL+ +DSLT +QR+GLK+FDDIK RIPRHEV +ME+LLQ
Sbjct: 314 VWGVGPATALKLYDKGHRTLDDLQKDDSLTSAQRIGLKFFDDIKQRIPRHEVSEMEKLLQ 373
Query: 360 KAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLRED 419
+ G ++LP VII+CGGSYRRGK+SCGD+D++I HPD +SH GFL K+V++LK++ FLRED
Sbjct: 374 EVGTDILPGVIIVCGGSYRRGKSSCGDMDIIITHPDGESHVGFLPKFVQRLKDINFLRED 433
Query: 420 LIFSTHSEE---------------------------VYPRDIYAFGLIAWTGNDVLNRRL 452
LIFS HS E VYPR+ +AFGL+AWTGNDVLNRRL
Sbjct: 434 LIFSIHSIEGTDCGVDTYFGLCTYPGRELRHRIDLKVYPRNRHAFGLLAWTGNDVLNRRL 493
Query: 453 RLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 511
R+LA+SKGY LDDTGL+ AT GSGGK+G R+ + DTEK+VFD LGFPWLEPHERNL
Sbjct: 494 RILADSKGYILDDTGLYLATPGSGGKRGGRSDAIINCDTEKDVFDTLGFPWLEPHERNL 552
>gi|115467296|ref|NP_001057247.1| Os06g0237200 [Oryza sativa Japonica Group]
gi|113595287|dbj|BAF19161.1| Os06g0237200, partial [Oryza sativa Japonica Group]
Length = 539
Score = 572 bits (1474), Expect = e-160, Method: Compositional matrix adjust.
Identities = 304/539 (56%), Positives = 384/539 (71%), Gaps = 45/539 (8%)
Query: 13 LDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKK-----VTHVLAMDLE 67
LD +G+F G+ F+V VQ+RRL++W+Q+L QMG V+EKL+ K VTHVLA D +
Sbjct: 6 LDPDGMFRGVSAFVVPHAVQSRRLEVWKQRLAQMGGRVQEKLAAKGGGGAVTHVLAADAK 65
Query: 68 ALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRI------KLDPEGENIADRV 121
ALL+++ L RF+GSV+ ++WLE+ L+ GE++ E + I K EG V
Sbjct: 66 ALLRELDAAWLHRFRGSVVSFEWLEECLKSGERLPEHKFAINYEEEFKPKKEGGAAGSGV 125
Query: 122 LSQIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLT- 180
L Q SSDG + ++ + E + + E + + + P++ SS+S +
Sbjct: 126 L-QSAKRSKISSDGPENRKETAGGNRESRDAIAHPN----EDSDVVKGPSTCTSSQSASG 180
Query: 181 NTLSTASASPDFSSHHITD-PSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKA 239
++ T ++ F + + S Y PPDLN+NITEIFGKLINIYRALG+DRRSFSYYKA
Sbjct: 181 DSKETIASQNAFKAEEASSGESSTYAPPDLNRNITEIFGKLINIYRALGDDRRSFSYYKA 240
Query: 240 IPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGE 299
IPVIEKLPFKIESADQVK LP IGKS++DHI EIV TGKLSKLEHFE DEKVRT+SLFGE
Sbjct: 241 IPVIEKLPFKIESADQVKDLPAIGKSLKDHINEIVNTGKLSKLEHFENDEKVRTVSLFGE 300
Query: 300 VWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQ 359
VWG+GPATA KLY+KGHRTLDDL+ +DSLT +QR+GLK+FDDIK RIPRHEV +ME+LLQ
Sbjct: 301 VWGVGPATALKLYDKGHRTLDDLQKDDSLTSAQRIGLKFFDDIKQRIPRHEVSEMEKLLQ 360
Query: 360 KAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLRED 419
+ G ++LP VII+CGGSYRRGK+SCGD+D++I HPD +SH GFL K+V++LK + FLRED
Sbjct: 361 EVGTDILPGVIIVCGGSYRRGKSSCGDMDIIITHPDGESHVGFLPKFVQRLKGINFLRED 420
Query: 420 LIFSTHSEE---------------------------VYPRDIYAFGLIAWTGNDVLNRRL 452
LIFS HS E VYPR+ +AFGL+AWTGNDVLNRRL
Sbjct: 421 LIFSIHSIEGTDCGVDTYFGLCTYPGRELRHRIDLKVYPRNRHAFGLLAWTGNDVLNRRL 480
Query: 453 RLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 511
R+LA+SKGY LDDTGL+ AT GSGGK+G R+ + DTEK+VFD LGFPWLEPHERNL
Sbjct: 481 RILADSKGYILDDTGLYLATPGSGGKRGGRSDAIINCDTEKDVFDTLGFPWLEPHERNL 539
>gi|51535806|dbj|BAD37891.1| DNA polymerase lambda [Oryza sativa Japonica Group]
Length = 549
Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust.
Identities = 304/539 (56%), Positives = 384/539 (71%), Gaps = 45/539 (8%)
Query: 13 LDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKK-----VTHVLAMDLE 67
LD +G+F G+ F+V VQ+RRL++W+Q+L QMG V+EKL+ K VTHVLA D +
Sbjct: 16 LDPDGMFRGVSAFVVPHAVQSRRLEVWKQRLAQMGGRVQEKLAAKGGGGAVTHVLAADAK 75
Query: 68 ALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRI------KLDPEGENIADRV 121
ALL+++ L RF+GSV+ ++WLE+ L+ GE++ E + I K EG V
Sbjct: 76 ALLRELDAAWLHRFRGSVVSFEWLEECLKSGERLPEHKFAINYEEEFKPKKEGGAAGSGV 135
Query: 122 LSQIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLT- 180
L Q SSDG + ++ + E + + E + + + P++ SS+S +
Sbjct: 136 L-QSAKRSKISSDGPENRKETAGGNRESRDAIAHPN----EDSDVVKGPSTCTSSQSASG 190
Query: 181 NTLSTASASPDFSSHHITD-PSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKA 239
++ T ++ F + + S Y PPDLN+NITEIFGKLINIYRALG+DRRSFSYYKA
Sbjct: 191 DSKETIASQNAFKAEEASSGESSTYAPPDLNRNITEIFGKLINIYRALGDDRRSFSYYKA 250
Query: 240 IPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGE 299
IPVIEKLPFKIESADQVK LP IGKS++DHI EIV TGKLSKLEHFE DEKVRT+SLFGE
Sbjct: 251 IPVIEKLPFKIESADQVKDLPAIGKSLKDHINEIVNTGKLSKLEHFENDEKVRTVSLFGE 310
Query: 300 VWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQ 359
VWG+GPATA KLY+KGHRTLDDL+ +DSLT +QR+GLK+FDDIK RIPRHEV +ME+LLQ
Sbjct: 311 VWGVGPATALKLYDKGHRTLDDLQKDDSLTSAQRIGLKFFDDIKQRIPRHEVSEMEKLLQ 370
Query: 360 KAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLRED 419
+ G ++LP VII+CGGSYRRGK+SCGD+D++I HPD +SH GFL K+V++LK + FLRED
Sbjct: 371 EVGTDILPGVIIVCGGSYRRGKSSCGDMDIIITHPDGESHVGFLPKFVQRLKGINFLRED 430
Query: 420 LIFSTHSEE---------------------------VYPRDIYAFGLIAWTGNDVLNRRL 452
LIFS HS E VYPR+ +AFGL+AWTGNDVLNRRL
Sbjct: 431 LIFSIHSIEGTDCGVDTYFGLCTYPGRELRHRIDLKVYPRNRHAFGLLAWTGNDVLNRRL 490
Query: 453 RLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 511
R+LA+SKGY LDDTGL+ AT GSGGK+G R+ + DTEK+VFD LGFPWLEPHERNL
Sbjct: 491 RILADSKGYILDDTGLYLATPGSGGKRGGRSDAIINCDTEKDVFDTLGFPWLEPHERNL 549
>gi|413952550|gb|AFW85199.1| hypothetical protein ZEAMMB73_545880 [Zea mays]
Length = 552
Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust.
Identities = 305/552 (55%), Positives = 375/552 (67%), Gaps = 67/552 (12%)
Query: 14 DSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKK----VTHVLAMDLEAL 69
D +GIF G+ F+V GVQ RRL +W+Q+LVQMG V EK +K V HVLAMD +AL
Sbjct: 14 DPDGIFRGVSAFIVPNGVQARRLVVWKQRLVQMGGRVVEKPTKGELAGVNHVLAMDAKAL 73
Query: 70 LQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNG 129
L+++ L RF+GSV+ ++W+E+ L+ GE++ ++ ++ E E + G
Sbjct: 74 LRELDAAWLHRFRGSVVSFEWIEECLKSGERLP--IHNFAINYEKEFKPKNAVC----TG 127
Query: 130 NTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASAS 189
N + S K+ K S+E Q S GD E + P P +S + S+A
Sbjct: 128 NLVA---SRPSKRTKMSSEYPGDHQIISGGDREKELAAGGP--PGASAHVVEG-SSAGKQ 181
Query: 190 PD---------------FSSHHI--------TDPSLLYNPPDLNKNITEIFGKLINIYRA 226
P+ SH PS+ Y P DLNKNIT+IFG+LI+IYRA
Sbjct: 182 PNQYASSQSSSADSKDTIGSHGTFGIEEASSGGPSI-YAPADLNKNITKIFGRLIDIYRA 240
Query: 227 LGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFE 286
LG+DRRSFSYYKAIPVIEKLPFKIESADQVKGLP IGKS++DHI EIVTTGKLSKLEHFE
Sbjct: 241 LGDDRRSFSYYKAIPVIEKLPFKIESADQVKGLPTIGKSLKDHINEIVTTGKLSKLEHFE 300
Query: 287 KDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRI 346
DEKVRTISLFGEVWG+GPATA KLYEKGHRTLDDL+ ++SLT++QR+GLK+FDDIK RI
Sbjct: 301 NDEKVRTISLFGEVWGVGPATALKLYEKGHRTLDDLQRDESLTNAQRIGLKFFDDIKQRI 360
Query: 347 PRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY 406
PRH+V +ME+LLQ G ++LP V I+CGGSYRRGKASCGD+D++I HPD +SH GFLSK+
Sbjct: 361 PRHDVSEMEKLLQDVGTDILPGVTIVCGGSYRRGKASCGDMDIIITHPDGESHVGFLSKF 420
Query: 407 VKKLKEMKFLREDLIFSTHSEE---------------------------VYPRDIYAFGL 439
V++LKE+ FLREDLIFS HS + VYPR+ YA GL
Sbjct: 421 VQRLKEINFLREDLIFSIHSVDGTDSGVDTYFGLCTYPGRELRHRIDLKVYPRNRYACGL 480
Query: 440 IAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFL 499
+AWTGNDVLNRR RLLAESKGY LDDTGL+ AT GSGGK R+ + TEK+VF+ L
Sbjct: 481 LAWTGNDVLNRRFRLLAESKGYVLDDTGLYLATRGSGGKHAGRSDAIVNCHTEKDVFETL 540
Query: 500 GFPWLEPHERNL 511
GFPWLEPHERNL
Sbjct: 541 GFPWLEPHERNL 552
>gi|326523649|dbj|BAJ92995.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 548
Score = 566 bits (1458), Expect = e-158, Method: Compositional matrix adjust.
Identities = 301/560 (53%), Positives = 377/560 (67%), Gaps = 61/560 (10%)
Query: 1 MAPKTTRKPT-PALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLS---- 55
MAPK RKP P D GIF G+ F V GVQ+RRL++W+QKLVQMG +E+K +
Sbjct: 1 MAPK--RKPAEPPRDPEGIFRGVSAFFVPHGVQSRRLEVWKQKLVQMGGRLEKKDADAKG 58
Query: 56 KKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGE 115
++ HVLA D +ALL+++ L RF GSV+ + WLE+ L+ GE++ E + I + E +
Sbjct: 59 ARINHVLAADAKALLRELGADWLHRFTGSVVSFDWLEECLKSGERLPEHKFAINYEEEFK 118
Query: 116 NIADRVLSQIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKG------------DVET 163
+ G G TS S K+ K S++D E+ + D T
Sbjct: 119 P------KKAAGAGGTSVSNPS---KRSKISSQDPENRKGTGGQGVKEEVPTREHRDAST 169
Query: 164 NA-----LSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFG 218
+A + + P S++ + S D +P+ Y PPDLN+NITEIFG
Sbjct: 170 HAHHGSGVEKGPGQFAHSQTSSGDTKDTVGSLDVEEASSGEPTT-YAPPDLNRNITEIFG 228
Query: 219 KLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGK 278
KLINIYRA+G+DRRSFSYYKAIPVIEKLPFKIES DQVK LP IGKS++DHI EI TTGK
Sbjct: 229 KLINIYRAMGDDRRSFSYYKAIPVIEKLPFKIESGDQVKNLPAIGKSLKDHINEIATTGK 288
Query: 279 LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKY 338
LSKLEHFE DEKVR +SLFGEVWG+GPATA KLY+KGHRTLDDL+ +DSLT++QR GLK+
Sbjct: 289 LSKLEHFENDEKVRAVSLFGEVWGVGPATALKLYDKGHRTLDDLRKDDSLTYAQRTGLKF 348
Query: 339 FDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKS 398
FDDI+ RIPRHEV +ME+LLQ+ G+++LP V I+CGGSYRRGK+SCGD+D+VI H D KS
Sbjct: 349 FDDIRQRIPRHEVSEMEKLLQEVGKDILPGVTIVCGGSYRRGKSSCGDMDIVITHDDGKS 408
Query: 399 HKGFLSKYVKKLKEMKFLREDLIFSTHSEE---------------------------VYP 431
H GFL K+V++LK++ FLREDLIFS +S E VYP
Sbjct: 409 HVGFLPKFVQRLKDINFLREDLIFSINSIEGTDSGVDTYFGLCTYPGRELRHRIDLKVYP 468
Query: 432 RDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDT 491
R+ YA GL+AWTGNDVLNRRLR+LAESKGY LDDTGL+ AT SGGK+ R+ +
Sbjct: 469 RNRYASGLLAWTGNDVLNRRLRILAESKGYVLDDTGLYLATQSSGGKRAGRSEAIVNCHE 528
Query: 492 EKEVFDFLGFPWLEPHERNL 511
EK+VFD LGFP+LEPHERNL
Sbjct: 529 EKDVFDTLGFPYLEPHERNL 548
>gi|222635274|gb|EEE65406.1| hypothetical protein OsJ_20743 [Oryza sativa Japonica Group]
Length = 578
Score = 558 bits (1438), Expect = e-156, Method: Compositional matrix adjust.
Identities = 305/568 (53%), Positives = 384/568 (67%), Gaps = 74/568 (13%)
Query: 13 LDSNGIFAGMRVFLVEKGVQNRRL-----------------------------QIWRQKL 43
LD +G+F G+ F+V VQ+RRL Q+W+Q+L
Sbjct: 16 LDPDGMFRGVSAFVVPHAVQSRRLEVAAPPSNPSQPPPTLSPVLRVSWLSSSVQVWKQRL 75
Query: 44 VQMGATVEEKLSKK-----VTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLG 98
QMG V+EKL+ K VTHVLA D +ALL+++ L RF+GSV+ ++WLE+ L+ G
Sbjct: 76 AQMGGRVQEKLAAKGGGGAVTHVLAADAKALLRELDAAWLHRFRGSVVSFEWLEECLKSG 135
Query: 99 EKVSEDLYRI------KLDPEGENIADRVLSQIQGNGNTSSDGESSHRKKIKSSTEDVEH 152
E++ E + I K EG VL Q SSDG + ++ + E +
Sbjct: 136 ERLPEHKFAINYEEEFKPKKEGGAAGSGVL-QSAKRSKISSDGPENRKETAGGNRESRDA 194
Query: 153 FQAESKGDVETNALSEAPNSPMSSESLT-NTLSTASASPDFSSHHITD-PSLLYNPPDLN 210
+ E + + + P++ SS+S + ++ T ++ F + + S Y PPDLN
Sbjct: 195 IAHPN----EDSDVVKGPSTCTSSQSASGDSKETIASQNAFKAEEASSGESSTYAPPDLN 250
Query: 211 KNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHI 270
+NITEIFGKLINIYRALG+DRRSFSYYKAIPVIEKLPFKIESADQVK LP IGKS++DHI
Sbjct: 251 RNITEIFGKLINIYRALGDDRRSFSYYKAIPVIEKLPFKIESADQVKDLPAIGKSLKDHI 310
Query: 271 QEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTH 330
EIV TGKLSKLEHFE DEKVRT+SLFGEVWG+GPATA KLY+KGHRTLDDL+ +DSLT
Sbjct: 311 NEIVNTGKLSKLEHFENDEKVRTVSLFGEVWGVGPATALKLYDKGHRTLDDLQKDDSLTS 370
Query: 331 SQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVV 390
+QR+GLK+FDDIK RIPRHEV +ME+LLQ+ G ++LP VII+CGGSYRRGK+SCGD+D++
Sbjct: 371 AQRIGLKFFDDIKQRIPRHEVSEMEKLLQEVGTDILPGVIIVCGGSYRRGKSSCGDMDII 430
Query: 391 IMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE---------------------- 428
I HPD +SH GFL K+V++LK + FLREDLIFS HS E
Sbjct: 431 ITHPDGESHVGFLPKFVQRLKGINFLREDLIFSIHSIEGTDCGVDTYFGLCTYPGRELRH 490
Query: 429 -----VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRA 483
VYPR+ +AFGL+AWTGNDVLNRRLR+LA+SKGY LDDTGL+ AT GSGGK+G R+
Sbjct: 491 RIDLKVYPRNRHAFGLLAWTGNDVLNRRLRILADSKGYILDDTGLYLATPGSGGKRGGRS 550
Query: 484 RTSLKFDTEKEVFDFLGFPWLEPHERNL 511
+ DTEK+VFD LGFPWLEPHERNL
Sbjct: 551 DAIINCDTEKDVFDTLGFPWLEPHERNL 578
>gi|5091544|gb|AAD39573.1|AC007067_13 T10O24.13 [Arabidopsis thaliana]
Length = 559
Score = 543 bits (1399), Expect = e-152, Method: Compositional matrix adjust.
Identities = 307/581 (52%), Positives = 370/581 (63%), Gaps = 92/581 (15%)
Query: 1 MAPKTTRKPTPALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEE-KLSKKVT 59
MA K R +P+ D G+FAGM VF+VE GVQ RRLQIW+QKLVQMGA +EE +++KKVT
Sbjct: 1 MAAKRGRNRSPSPDPEGMFAGMVVFMVEIGVQRRRLQIWKQKLVQMGAVIEEDRVTKKVT 60
Query: 60 HVLAMDLEALLQQVSKQHLARFKG---SVIR----------------------------- 87
HVLAM+LEALL + K+ L+ F S IR
Sbjct: 61 HVLAMNLEALLHKFGKERLSHFTAVIFSTIRLIGYKFYLRIEIIQCYKFIYIGCSLQRLM 120
Query: 88 -YQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSHRKKIKSS 146
YQWLEDSL GEK +EDLY +K+D E + + L I G S+ +SS +K+ + S
Sbjct: 121 LYQWLEDSLTSGEKANEDLYVLKIDSEEVDKPKKSLPAISG-----SEDQSSPQKRTRYS 175
Query: 147 TEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNP 206
+ + ES + + +P+SP S + + S + + ++ + +Y P
Sbjct: 176 PDAGDFKGVESHSNTQG-----SPDSPTSCSVPSTSASPGEGIAETPTSPQSESTSVYKP 230
Query: 207 PDLNKNITEIFGKLINIYRA---------------LGEDRRSFSYYKAIPVIEKLPFKIE 251
PDLN+NITEIFGKLINIYR LGEDRRSFSYYKAIPVIEK P +IE
Sbjct: 231 PDLNRNITEIFGKLINIYRGTISGVCILDYSLIVTLGEDRRSFSYYKAIPVIEKFPTRIE 290
Query: 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 311
S DQ+K LPGIGK+M+DHIQEIVTTGKLSKLEHFE DEKVRTISLFGEVWG+GPATA KL
Sbjct: 291 SVDQLKHLPGIGKAMRDHIQEIVTTGKLSKLEHFETDEKVRTISLFGEVWGVGPATALKL 350
Query: 312 YEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQME------RLLQKAGEEV 365
YEKGHRTL+DLKNEDSLTH+Q+LGLKYFDDIKTRIPR EV + L + +
Sbjct: 351 YEKGHRTLEDLKNEDSLTHAQKLGLKYFDDIKTRIPRQEVRFLNFNVNFVCLYYPSCNFL 410
Query: 366 LPEV-IILC-----GGSYR---------RGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 410
L + + C YR RGKA+CGDLD+V+ HPD +
Sbjct: 411 LIFLHFLYCRCKRWNNFYRESARKLCLARGKATCGDLDIVVTHPDGQR------------ 458
Query: 411 KEMKFLREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 470
KE+ L +D +T + RDIY+FGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP
Sbjct: 459 KELSGLVKDKKDNTMIDSAMSRDIYSFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 518
Query: 471 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 511
AT+ S G +G R SLK TEK+VFDFLGFPWLEPHERNL
Sbjct: 519 ATHSSSGNRGARGTASLKLSTEKQVFDFLGFPWLEPHERNL 559
>gi|449478716|ref|XP_004155400.1| PREDICTED: DNA polymerase lambda-like, partial [Cucumis sativus]
Length = 400
Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust.
Identities = 266/420 (63%), Positives = 319/420 (75%), Gaps = 23/420 (5%)
Query: 1 MAPKTTRKPTPALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTH 60
MAPK + + + D +G+FAGM VFLVEKGVQ RRLQIW+QKLVQMGA++EE+LSK V+H
Sbjct: 1 MAPKRRKSQSLSEDPHGMFAGMVVFLVEKGVQTRRLQIWKQKLVQMGASIEERLSKMVSH 60
Query: 61 VLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIK--LDPEGENIA 118
+ A L+ALL++V LARFKG V+ YQWLEDSL GEK SEDLY +K LD +G +
Sbjct: 61 IFASSLDALLEKVDGARLARFKGKVLSYQWLEDSLSSGEKASEDLYTVKVGLDEDGRD-- 118
Query: 119 DRVLSQIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSES 178
+ S KK+ S + E ES GD + + L + +
Sbjct: 119 ---------------KPQQSTPKKLNLSPNNSEAVSFESGGDSDASTLVTKTATGLEDSK 163
Query: 179 LT-NTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYY 237
L+ T+ + DF ++I +L Y+PPD+NKNITEIFGKLINIYRALG++RRSFSYY
Sbjct: 164 LSIGQTVTSPRTSDFVGNNI---ALSYSPPDMNKNITEIFGKLINIYRALGDERRSFSYY 220
Query: 238 KAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLF 297
KAIPVIEKLPF+IES DQVK LP IGKS+QDHIQEIVTTGKLSKLEHFE DEKVRTISLF
Sbjct: 221 KAIPVIEKLPFRIESIDQVKHLPAIGKSLQDHIQEIVTTGKLSKLEHFETDEKVRTISLF 280
Query: 298 GEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERL 357
GEVWGIGPATA +LYEKG+RTLDDL+ E+SLTH+Q+LGLKYFDDIK RIPR+EV+ ME L
Sbjct: 281 GEVWGIGPATALRLYEKGYRTLDDLQKEESLTHAQKLGLKYFDDIKQRIPRNEVQDMESL 340
Query: 358 LQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLR 417
L+KAGE+VLP V ILCGGS+RRGK+SCGD+D+VI HPD KSH+GFL KYVK LK+MKFLR
Sbjct: 341 LKKAGEDVLPGVDILCGGSFRRGKSSCGDMDIVITHPDGKSHRGFLPKYVKHLKDMKFLR 400
>gi|218197869|gb|EEC80296.1| hypothetical protein OsI_22314 [Oryza sativa Indica Group]
Length = 1863
Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust.
Identities = 272/470 (57%), Positives = 335/470 (71%), Gaps = 47/470 (10%)
Query: 81 FKG-SVIRYQWLEDSLRLGEKVSEDLYRI------KLDPEGENIADRVLSQIQGNGNTSS 133
FK SV+ ++WLE+ L+ GE++ E + I K EG VL Q SS
Sbjct: 1402 FKAESVVSFEWLEECLKSGERLPEHKFAINYEEEFKPKKEGGAAGSGVL-QSAKRSKISS 1460
Query: 134 DGESSHRKKI---KSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLT-NTLSTASAS 189
DG S ++ + S + + H +S + + PN+ SS+S + ++ T ++
Sbjct: 1461 DGPESRKETAGGNRESRDAIAHPNEDSD-------VVKGPNTYTSSQSASGDSKETIASQ 1513
Query: 190 PDFSSHHITD-PSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPF 248
F + + S Y PPDLN+NITEIFGKLINIYRALG+DRRSFSYYKAIPVIEKLPF
Sbjct: 1514 NAFKAEEASSGESSTYAPPDLNRNITEIFGKLINIYRALGDDRRSFSYYKAIPVIEKLPF 1573
Query: 249 KIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATA 308
KIESADQVK LP IGKS++DHI EIV TGKLSKLEHFE DEKVRT+SLFGEVWG+GPATA
Sbjct: 1574 KIESADQVKDLPAIGKSLKDHINEIVNTGKLSKLEHFENDEKVRTVSLFGEVWGVGPATA 1633
Query: 309 QKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE 368
KLY+KGHRTLDDL+ +DSLT +QR+GLK+FDDIK RIPRHEV +ME+LLQ+ G ++LP
Sbjct: 1634 LKLYDKGHRTLDDLQKDDSLTSAQRIGLKFFDDIKQRIPRHEVSEMEKLLQEVGTDILPG 1693
Query: 369 VIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE 428
VII+CGGSYRRGK+SCGD+D++I HPD +SH GFL K+V++LK++ FLREDLIFS HS E
Sbjct: 1694 VIIVCGGSYRRGKSSCGDMDIIITHPDGESHVGFLPKFVQRLKDINFLREDLIFSIHSIE 1753
Query: 429 ---------------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGY 461
VYPR+ +AFGL+AWTGNDVLNRRLR+LA+SKGY
Sbjct: 1754 GTDCGVDTYFGLCTYPGRELRHRIDLKVYPRNRHAFGLLAWTGNDVLNRRLRILADSKGY 1813
Query: 462 RLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 511
LDDTGL+ AT GSGGK+G R+ + DTEK+VFD LGFPWLEPHERNL
Sbjct: 1814 ILDDTGLYLATPGSGGKRGGRSDAIINCDTEKDVFDTLGFPWLEPHERNL 1863
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 64/106 (60%), Gaps = 17/106 (16%)
Query: 14 DSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGA-TVEEKLSKK-----VTHVLAMDLE 67
D +G+F G+ F+V W+Q+L QMG V+EKL+ K VTHVLA D +
Sbjct: 1227 DPDGMFRGVSAFVV-----------WKQRLAQMGGRVVQEKLAAKGGGGAVTHVLAADAK 1275
Query: 68 ALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPE 113
ALL+++ L RF+GSV+ ++WLE+ L+ GE++ E + I + E
Sbjct: 1276 ALLRELDAAWLHRFRGSVVSFEWLEECLKSGERLPEHKFAINYEEE 1321
>gi|297849654|ref|XP_002892708.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297338550|gb|EFH68967.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 330
Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust.
Identities = 247/325 (76%), Positives = 272/325 (83%), Gaps = 28/325 (8%)
Query: 215 EIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIV 274
EIFGKLINIYRALGEDRRSFSYYKAIP+IEK P +IES DQ+K PGIGK+M+DHIQEIV
Sbjct: 6 EIFGKLINIYRALGEDRRSFSYYKAIPIIEKFPTRIESVDQLKHFPGIGKAMRDHIQEIV 65
Query: 275 TTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRL 334
TTGKLSKLEHFE DEKVRTISLFGEVWGI PATA KLYEKGHRTL+DLKNEDSLTH+QRL
Sbjct: 66 TTGKLSKLEHFETDEKVRTISLFGEVWGISPATALKLYEKGHRTLEDLKNEDSLTHAQRL 125
Query: 335 GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG-DLDVVIMH 393
GLKYFDDI+TRIPRHEV+++E+LLQ+ GEE LP V I+CGGSYRRGKA+C +LD+VI H
Sbjct: 126 GLKYFDDIRTRIPRHEVQEVEQLLQRVGEETLPGVNIVCGGSYRRGKATCTYNLDIVITH 185
Query: 394 PDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE------------------------- 428
PD +SHKGFL+K+VK+LKE+ FLREDLIFSTHSEE
Sbjct: 186 PDGQSHKGFLTKFVKRLKEINFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGQELRRHID 245
Query: 429 --VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTS 486
VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPAT+ S G +G R S
Sbjct: 246 FKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATHSSSGNRGARGTAS 305
Query: 487 LKFDTEKEVFDFLGFPWLEPHERNL 511
LK TEK+VFDFLGFPWLEPHERNL
Sbjct: 306 LKLSTEKQVFDFLGFPWLEPHERNL 330
>gi|242095276|ref|XP_002438128.1| hypothetical protein SORBIDRAFT_10g008500 [Sorghum bicolor]
gi|241916351|gb|EER89495.1| hypothetical protein SORBIDRAFT_10g008500 [Sorghum bicolor]
Length = 498
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 272/505 (53%), Positives = 336/505 (66%), Gaps = 65/505 (12%)
Query: 1 MAPKTTRKPTPAL--DSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKK- 57
MAPK RKP A D +GIF G+ F+V GVQ RRL++W+Q+LVQMG V EK K
Sbjct: 1 MAPK--RKPAVAAERDPDGIFRGVSAFIVPHGVQARRLEVWKQRLVQMGGRVVEKPPKGE 58
Query: 58 ---VTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEG 114
HVLAMD +ALL+++ L RF+GSV+ ++W+E+ L+ GE++ + I + E
Sbjct: 59 LAGFNHVLAMDAKALLRELDAAWLHRFRGSVVSFEWMEECLKSGERLPNHKFAINYEEE- 117
Query: 115 ENIADRVLSQIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGD-------------- 160
L G T + G K+ K S+E Q S GD
Sbjct: 118 -------LKPKNAVG-TENLGALQPAKRTKMSSEYPGDCQRVSGGDRESELAAAGSPGAS 169
Query: 161 ---VETNALSEAPNSPMSSESLTNTL-STASASPDFSSHHITD--PSLLYNPPDLNKNIT 214
VE ++ + PN SS+S + T + F + PS+ Y P DLN+NIT
Sbjct: 170 AHMVEGSSAGKQPNQYASSQSSSADSKDTVGSHGTFGIEEASSGGPSI-YAPADLNRNIT 228
Query: 215 EIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIV 274
+IFG+LI+IYRALG+DRRSFSYYKAIPVIEKLPFKIESADQVKGLP IGKS++DHI EIV
Sbjct: 229 KIFGRLIDIYRALGDDRRSFSYYKAIPVIEKLPFKIESADQVKGLPTIGKSLKDHINEIV 288
Query: 275 TTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRL 334
TTGKLSKLEHFE DEKVRTISLFGEVWG+GPATA KLYEKGHRTLDDL+ ++SLT++QR+
Sbjct: 289 TTGKLSKLEHFENDEKVRTISLFGEVWGVGPATALKLYEKGHRTLDDLRKDESLTNAQRI 348
Query: 335 GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
GLK+FDDIK RIPRHEV +ME LL+ G ++LP VII+CGGSYRRGKASCGD+D++I HP
Sbjct: 349 GLKFFDDIKQRIPRHEVSEMEELLKDVGTDILPGVIIVCGGSYRRGKASCGDMDIIITHP 408
Query: 395 DRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE-------------------------- 428
D +SH GFL K+V++LKE+ FLREDLIFS HS +
Sbjct: 409 DGESHVGFLPKFVQRLKEINFLREDLIFSIHSVDGSDSGVDTYFGLCTYPGRELRHRIDL 468
Query: 429 -VYPRDIYAFGLIAWTGNDVLNRRL 452
VYPR+ YA GL+AWTGNDVLNRRL
Sbjct: 469 KVYPRNRYACGLLAWTGNDVLNRRL 493
>gi|168048054|ref|XP_001776483.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672209|gb|EDQ58750.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 535
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 242/524 (46%), Positives = 329/524 (62%), Gaps = 48/524 (9%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHL 78
F G+ + VE G+Q RRLQIW+QKL+Q+G VE+ S+ ++HV A +E + + ++ L
Sbjct: 29 FRGIAAYFVETGIQPRRLQIWKQKLLQLGGVVEDHWSEHLSHVFAASVETVTDKCGRRKL 88
Query: 79 ARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESS 138
+V++Y W+ED L+ G+ + D Y + + PE +++ N SS
Sbjct: 89 KNILQNVLKYTWIEDCLKAGKCLPIDSYVLDILPENRSVSRNSTENSGLRDNAPEKAVSS 148
Query: 139 HRKKIKSSTEDVEHFQ-AESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHI 197
+K+ SS + + Q A S+ D + +EA SS L A P+
Sbjct: 149 SLQKLTSSERGLHNTQGASSEEDCDMKNEAEA-----SSAELAPARDAAPGPPEAG---- 199
Query: 198 TDPSLLYNPPDLNKNITEIFGKLINIYR-ALGEDRRSFSYYKAIPVIEKLPFKIESADQV 256
Y PP+LN +IT F ++ +IY+ ALG+DRR+FSYYKA+ V+EK+PFKI S +Q+
Sbjct: 200 ------YTPPNLNAHITGPFSEIKDIYKEALGDDRRAFSYYKALSVLEKVPFKITSVNQI 253
Query: 257 KGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH 316
KG P IGKS+ + I EI++TG+ SKLEH + D KVR ++LFG VWGIGPATAQ+LY+KG
Sbjct: 254 KGFPTIGKSLMESIHEILSTGRFSKLEHLKNDNKVRVLALFGSVWGIGPATAQRLYDKGL 313
Query: 317 RTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGS 376
RTL++LK +++LT QR+GL + +DI T+IPRHE+++ME ++QK+G E+ P + I+CGGS
Sbjct: 314 RTLEELKTDNTLTPPQRIGLMFHNDIITKIPRHEIKEMEAIVQKSGSELCPGISIMCGGS 373
Query: 377 YRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDL-IFSTHSEE------- 428
YRRGKA GD+D VI HPD SH GFL + V+KLK FL EDL I HS E
Sbjct: 374 YRRGKALSGDMDFVITHPDGHSHTGFLHELVRKLKSEDFLTEDLRIGIEHSTEGTDHGVD 433
Query: 429 --------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGL 468
VYP D Y FGLIAWTGND+LNRRLRLLAE+KGY LDD GL
Sbjct: 434 TWFGLCKYPGREMRHRVDFKVYPFDQYPFGLIAWTGNDILNRRLRLLAEAKGYSLDDHGL 493
Query: 469 FP-ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 511
+P T +GGK V+ S+ +E EVF+ LGFPWLEPHERNL
Sbjct: 494 YPIVTDANGGK--VKLSVSVPCKSECEVFEKLGFPWLEPHERNL 535
>gi|302763783|ref|XP_002965313.1| hypothetical protein SELMODRAFT_83116 [Selaginella moellendorffii]
gi|300167546|gb|EFJ34151.1| hypothetical protein SELMODRAFT_83116 [Selaginella moellendorffii]
Length = 340
Score = 359 bits (921), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 183/342 (53%), Positives = 238/342 (69%), Gaps = 36/342 (10%)
Query: 204 YNPPDLNKNITEIFGKLINIYR-ALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGI 262
Y PP+LN+NIT FG+L +IY+ LG++RRS+SY+KAI +EKLP+++ S DQVK P I
Sbjct: 1 YAPPNLNQNITGPFGELRDIYKNGLGDNRRSYSYHKAISYLEKLPYQVTSVDQVKNAPSI 60
Query: 263 GKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL 322
GKS+Q+HIQEI++TGKLSKLEHF DEKV+T+SLFG VWGIGP+ A K YEKGHR+L+DL
Sbjct: 61 GKSLQNHIQEILSTGKLSKLEHFRDDEKVKTVSLFGSVWGIGPSNALKYYEKGHRSLEDL 120
Query: 323 KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII--LCGGSYRRG 380
++++SLT +QRLGL+YF+DI +IPR E +E L+Q+ + P V I +CGGSYRRG
Sbjct: 121 RHDESLTRTQRLGLQYFEDINAKIPRSEANYVENLVQEIASAIQPGVYISVVCGGSYRRG 180
Query: 381 KASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE------------- 427
K+ GD+D+++ H D SHKGFL + V++LK++ FL EDL+ H E
Sbjct: 181 KSLVGDMDMIVTHSDGTSHKGFLRRLVQRLKDIDFLTEDLLIGYHEELNDDAVDTYFGLC 240
Query: 428 -------------EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPAT-Y 473
+VY + Y FGLIAWTGNDVLNRRLR+LA KGY+LDDTGL+ Y
Sbjct: 241 KYPGREQRHRIDFKVYSWEQYPFGLIAWTGNDVLNRRLRILANEKGYKLDDTGLYRTILY 300
Query: 474 GSGGKQGVR----ARTSLKFDTEKEVFDFLGFPWLEPHERNL 511
+ V AR K EKEVF+F+G PWLEP+ERNL
Sbjct: 301 EKHKRHKVSKLKGARVICK--NEKEVFEFVGHPWLEPNERNL 340
>gi|302790790|ref|XP_002977162.1| hypothetical protein SELMODRAFT_106459 [Selaginella moellendorffii]
gi|300155138|gb|EFJ21771.1| hypothetical protein SELMODRAFT_106459 [Selaginella moellendorffii]
Length = 338
Score = 358 bits (919), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 179/340 (52%), Positives = 237/340 (69%), Gaps = 34/340 (10%)
Query: 204 YNPPDLNKNITEIFGKLINIYR-ALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGI 262
Y PP+LN+NIT FG+L +IY+ LG++RRS+SY+KAI +EKLP+++ S QVK P I
Sbjct: 1 YAPPNLNQNITGPFGELRDIYKNGLGDNRRSYSYHKAISYLEKLPYQVTSVYQVKNAPSI 60
Query: 263 GKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL 322
GKS+Q+HIQEI++TGKLSKLEHF DEKV+T+SLFG VWGIGP+ A K YEKGHR+L+DL
Sbjct: 61 GKSLQNHIQEILSTGKLSKLEHFRDDEKVKTVSLFGSVWGIGPSNALKYYEKGHRSLEDL 120
Query: 323 KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA 382
++++SLT +QRLGL+YF+DI +IPR E +E L+Q+ + P + ++CGGSYRRGK+
Sbjct: 121 RHDESLTRTQRLGLQYFEDINAKIPRSEANYVENLVQEIASAIQPGISVVCGGSYRRGKS 180
Query: 383 SCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE--------------- 427
GD+D+++ H D SHKGFL + +++LK++ FL EDL+ H E
Sbjct: 181 LVGDMDMIVTHSDGTSHKGFLRRLIQRLKDIDFLTEDLLIGYHEELNDDAVDTYFGLCKY 240
Query: 428 -----------EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPAT-YGS 475
+VY + Y FGLIAWTGNDVLNRRLR+LA KGY+LDDTGL+ Y
Sbjct: 241 PGREQRHRIDFKVYSWEQYPFGLIAWTGNDVLNRRLRILANEKGYKLDDTGLYRTILYEK 300
Query: 476 GGKQGVR----ARTSLKFDTEKEVFDFLGFPWLEPHERNL 511
+ V AR K EKEVF+F+G PWLEP+ERNL
Sbjct: 301 HKRHKVSKLKGARVICK--NEKEVFEFVGHPWLEPNERNL 338
>gi|255558390|ref|XP_002520222.1| DNA polymerase lambda, putative [Ricinus communis]
gi|223540714|gb|EEF42277.1| DNA polymerase lambda, putative [Ricinus communis]
Length = 314
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 185/296 (62%), Positives = 222/296 (75%), Gaps = 10/296 (3%)
Query: 1 MAPKTTRK-PTPALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVT 59
MAPK T K TP+ D NG+F+GM VFLVE GVQ+RRLQIW+QKLVQMGAT+E +LSKKVT
Sbjct: 23 MAPKATAKNKTPSRDPNGMFSGMVVFLVENGVQSRRLQIWKQKLVQMGATIETRLSKKVT 82
Query: 60 HVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIAD 119
HVLAM+ ALLQQ+ K+ L R K V+ YQWLEDSLRLG+KVSE+ Y +++D E ++
Sbjct: 83 HVLAMNSNALLQQLDKERLQRLKVKVLVYQWLEDSLRLGKKVSEETYNVEVDLEEQSNKK 142
Query: 120 RVLSQIQGNGNTSSDGESSHR-KKIKSST-EDVEHFQAESKGDVETNALSEAPNSPMSSE 177
+ L +GN SS E S R KK++SS+ ED ++ E + NAL E PNSP +S
Sbjct: 143 QSLVGESTDGNASSGDEPSPRNKKVRSSSLEDNKNKPGE-----DDNALIEEPNSPSASS 197
Query: 178 SLTNTLSTASA--SPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFS 235
++ + ++ S+ DPS Y PPDLN+NITEIFGKLINIYRALG+DRRSFS
Sbjct: 198 DSSDLTLSRASIGMKTPSNSPSNDPSSAYCPPDLNRNITEIFGKLINIYRALGDDRRSFS 257
Query: 236 YYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
YYKAIPV EKLPFKIESADQVK LPGIGKS+QD+IQEIVTTGKLSKLEHFE DEKV
Sbjct: 258 YYKAIPVTEKLPFKIESADQVKNLPGIGKSLQDNIQEIVTTGKLSKLEHFETDEKV 313
>gi|348532763|ref|XP_003453875.1| PREDICTED: DNA polymerase lambda-like [Oreochromis niloticus]
Length = 564
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 171/532 (32%), Positives = 269/532 (50%), Gaps = 42/532 (7%)
Query: 15 SNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLA---MDLEALLQ 71
+ IF G+ V+L+ G+ N R QI+++++ Q G E LS VTHV+ MD E L+
Sbjct: 38 TGNIFNGVTVYLLPAGIGNARCQIFQRQIQQNGGRTESSLSPGVTHVVVDDNMDSERALR 97
Query: 72 QVSKQHLARFKGSVIRYQWLEDSL---RLGEKVSEDLYRIKLDPEG--ENIADRVLSQIQ 126
+ K +++ WL + +L + S L K D E E I L+ I+
Sbjct: 98 LL-KVDCMPSGVQLVKCTWLSLCISGKQLLDIASYSLLSPKSDSETKHEEIKKESLN-IK 155
Query: 127 GNGNTS----SDGESSHRKKIKSSTEDVEHFQ-AESKGDVETNALSEAPNSPMSSESLTN 181
T +D E + + S E+V + A S+ D+E + P SL+
Sbjct: 156 PAAETVIEPVTDQEENTEMTVPDSKEEVRGEEDAVSQSDLEALITGQHPKEETPGPSLSL 215
Query: 182 TLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIP 241
TA+ P S + S + NK+IT+ L Y G+ R+ Y KA+
Sbjct: 216 GPDTAAQKP-VSGKWVCAQSSQSKSNNFNKHITDKLELLAKAYTHQGDKWRALGYSKAVN 274
Query: 242 VIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVW 301
++ I S + +PGIGK M D I+EI+ +G L KL+H E V + LF +W
Sbjct: 275 ALKSYHKPITSYQEACQIPGIGKRMADKIEEIMESGHLRKLDHI--GEAVPVLELFVNIW 332
Query: 302 GIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKA 361
G G TAQ Y++G RTLDD++ + LT++Q++GLK+++D R+PR E +E++++ A
Sbjct: 333 GAGTKTAQLWYQQGFRTLDDIRTKAHLTNTQKIGLKHYNDFLDRMPREEAGAIEKVVRDA 392
Query: 362 GEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLI 421
+ + P ++ + GSYRRGKA+CGD+DV+I HPD KSH+G +K ++ L++ FL +DL+
Sbjct: 393 AQAIDPGLVAMACGSYRRGKATCGDVDVLISHPDGKSHRGIFTKVLQTLRDSGFLTDDLV 452
Query: 422 ----------------FSTHSEE-------VYPRDIYAFGLIAWTGNDVLNRRLRLLAES 458
+ H + + P + +A L+ +TG+ NR +R LA++
Sbjct: 453 SHEENGEQKKYMGVCRLAGHGQRHRRLDIIIVPYNEFACALMYFTGSAHFNRSMRALAKT 512
Query: 459 KGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
K L + L G + V T L TEK+VF LG P+ EPHER+
Sbjct: 513 KRMSLSEHSLNKDVVRQGSVK-VHGGTPLPTLTEKDVFSLLGIPYREPHERD 563
>gi|327279073|ref|XP_003224283.1| PREDICTED: DNA polymerase lambda-like [Anolis carolinensis]
Length = 575
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 169/548 (30%), Positives = 268/548 (48%), Gaps = 66/548 (12%)
Query: 17 GIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQV 73
G + +++++ GV R +I+R++++Q G +V ++S +VTHV+ MD E + +
Sbjct: 39 GWMEPITIYVLQAGVGQARAEIFRKQILQNGGSVCSQISPEVTHVIVDEGMDCERAFRLL 98
Query: 74 SKQHL--------ARFKGSVIRYQWLED----SLRLGEKV----------SEDLYRIKLD 111
L A + S I Q L D SL + EK S+ L + +
Sbjct: 99 RLTKLPKGLQLVKASWLSSCISAQQLLDTTGYSLFIPEKYMDEEGHSKKQSQYLDKKTIH 158
Query: 112 PEGENIADRVLSQIQGNGNTS-SDGESSHRKKIKSSTEDVEHFQAE----SKGDVETNAL 166
P+ EN + ++ Q N SD + S +K K D E + E + G++E
Sbjct: 159 PQIENAVLELKAEPQSGANVPFSDVDPSGEQKDKEVISDDEGMEEEDCMVTLGELEALKS 218
Query: 167 SEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRA 226
+ PN NT S S + + S + N++ITE G L Y
Sbjct: 219 GQNPN---------NTFSGGSPVVPPTGKWVCAQSSESKKMNHNQSITEKLGLLEKAYSV 269
Query: 227 LGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFE 286
G+ RS Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H
Sbjct: 270 QGDKWRSLGYSKAINALKSYHKPVTSYQEACKIPGIGKKMAEKIMEILESGHLRKLDHI- 328
Query: 287 KDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRI 346
E V + +F +WG G TAQ Y++G RTLDD++ + SLT Q +GLK+++D R+
Sbjct: 329 -SESVSALEVFSNIWGAGVKTAQMWYQQGFRTLDDVRTKASLTRQQAIGLKHYEDFVERM 387
Query: 347 PRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY 406
PR E ++E+ +++A + + P ++ + GS+RRGK++CGD+DV++ HPD SH+G SK
Sbjct: 388 PREEAAEIEQTVREAAQSIQPGLVCVACGSFRRGKSTCGDVDVLVTHPDGHSHQGVFSKL 447
Query: 407 VKKLKEMKFLREDLIFSTHSEE-----------------------VYPRDIYAFGLIAWT 443
+ L++ FL +DL+ S V P +A L+ +T
Sbjct: 448 LDCLRKQGFLTDDLVSQEDSGNQKKYLGVCRLPGSDRRHRRLDIIVVPYSEFACSLLYFT 507
Query: 444 GNDVLNRRLRLLAESKGYRLDDTGLFPATY-GSGGKQGVRARTSLKFDTEKEVFDFLGFP 502
G+ NR +R LA++KG L + L G GG + V +L TEK+VF LG P
Sbjct: 508 GSAHFNRSMRALAKTKGMSLSEHALSRGVVRGHGGLKTVPG-LALPTPTEKDVFLLLGLP 566
Query: 503 WLEPHERN 510
+ EP ER+
Sbjct: 567 YREPQERD 574
>gi|302801283|ref|XP_002982398.1| hypothetical protein SELMODRAFT_155063 [Selaginella moellendorffii]
gi|300149990|gb|EFJ16643.1| hypothetical protein SELMODRAFT_155063 [Selaginella moellendorffii]
Length = 315
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 126/311 (40%), Positives = 189/311 (60%), Gaps = 30/311 (9%)
Query: 226 ALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF 285
LG+ RS Y K + + LP+K+ S +Q++ + G+GKS+ ++EI+ TG+L KL++
Sbjct: 8 VLGDQWRSLIYRKTVNKLRSLPYKVTSVEQIREMYGVGKSLVKMVKEILGTGQLQKLDNL 67
Query: 286 EKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTR 345
+ +V I + G VWGIG A++LY+KG RT+ DL+N SLT QR+G+KY+DDI R
Sbjct: 68 K--AQVGEIQVLGSVWGIGAIQARELYKKGFRTVKDLENYSSLTSMQRMGVKYYDDINLR 125
Query: 346 IPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSK 405
IPR EV E+ ++ E + P + GSYRRGK +CGD+D++I HPD SH+ L++
Sbjct: 126 IPRDEVVDTEKFVRGVVETLAPGAWVNAAGSYRRGKPTCGDVDILITHPDGSSHQDLLAR 185
Query: 406 YVKKLKEMKFLREDL------------------IFSTHSE-------EVYPRDIYAFGLI 440
V++L+ ++F+ + L IF + +VYPR +YAF L+
Sbjct: 186 LVQELRRIEFIVDGLRVDANARKGGTQPDMFMGIFHFQCKAYRRIDIKVYPRHVYAFALL 245
Query: 441 AWTGNDVLNRRLRLLAESK-GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFL 499
A+TGNDVLNR++R LA K GY+L D GLF S K + S+ +TE+E+F+ L
Sbjct: 246 AFTGNDVLNRKIRFLARVKFGYKLSDQGLFIRE--SKKKDSKASTESIPCETEREIFEKL 303
Query: 500 GFPWLEPHERN 510
G + EPH+RN
Sbjct: 304 GLDYPEPHDRN 314
>gi|33416901|gb|AAH55597.1| Polymerase (DNA directed), lambda [Danio rerio]
gi|197247243|gb|AAI65409.1| Poll protein [Danio rerio]
Length = 566
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 161/548 (29%), Positives = 259/548 (47%), Gaps = 47/548 (8%)
Query: 2 APKTTRKPTPALDSNG-IFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTH 60
AP R P ++ G +F G+ +++V G+ R I+ +++ Q G + TH
Sbjct: 26 APPFKRSPAESITLTGTVFQGVTIYIVPAGIGKARCDIFHRQITQNGGQAVSTFAPSCTH 85
Query: 61 VL---AMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENI 117
V+ ++D + L+ + L +I+ WL + + + Y + L PE +
Sbjct: 86 VVVDDSVDFKRALRLLKVDTLPS-AVHLIKCTWLSACISEKRLLDTEDYSL-LPPESPTV 143
Query: 118 ADRVLSQ---IQGNGNTSS-------DGESSHRKKIKSSTEDVEHFQAESKGDVETNALS 167
A S IQ ++ D H ++ + + E G V N L
Sbjct: 144 AAAEKSNEATIQPVPEVAAQDPLQILDNLDPHENLTETIPPETQEEYHEEDG-VSQNDLE 202
Query: 168 EAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRAL 227
+ SES + +++ P + + NK++T+ L Y
Sbjct: 203 ALISGVHPSESNQDQEQSSADKPVLPGKWVCSQPSTTKGENHNKHLTDKLEPLAKAYTHT 262
Query: 228 GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEK 287
G+ R+ Y KAI ++ I S ++ +PGIGK M D I EI+ +G L KL+H
Sbjct: 263 GDKWRALGYSKAINALKSYHKPITSYEEACKIPGIGKRMADKIMEIMESGHLRKLDHI-- 320
Query: 288 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIP 347
E+V + +F +WG G TAQ Y++G RTL+D++ + L H+ R+GLK++DD+ R+P
Sbjct: 321 GEEVPVLEMFTNIWGAGAKTAQMWYQQGFRTLEDIRTKAVLNHTLRIGLKHYDDLLERMP 380
Query: 348 RHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYV 407
R E +E+ ++ A V P+++ + GSYRRG+++CGD+DV+I HPD +SHKG SK +
Sbjct: 381 RSEANAIEKTVKDAAHSVDPQLLAMACGSYRRGRSTCGDVDVLITHPDGQSHKGVFSKIL 440
Query: 408 KKLKEMKFLREDLIFSTHSEE-------------------------VYPRDIYAFGLIAW 442
L + FL +DL+ +H E V P +A L+ +
Sbjct: 441 HLLHQSGFLTDDLV--SHEENGEQKKYMGICRLPGTSQLHRRLDIIVVPYSEFACALLYF 498
Query: 443 TGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFP 502
TG+ NR +R LA++K L + L A G + V A T L TEK VF LG P
Sbjct: 499 TGSAHFNRSMRALAKTKNMSLSEHSLNCAVIRQRGVKLV-AGTPLHTPTEKNVFQHLGIP 557
Query: 503 WLEPHERN 510
+ EPHER+
Sbjct: 558 YREPHERD 565
>gi|47086063|ref|NP_998408.1| DNA polymerase lambda [Danio rerio]
gi|41107585|gb|AAH65469.1| Polymerase (DNA directed), lambda [Danio rerio]
Length = 566
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 160/548 (29%), Positives = 260/548 (47%), Gaps = 47/548 (8%)
Query: 2 APKTTRKPTPALDSNG-IFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTH 60
AP + R P ++ G +F G+ +++V G+ R I+ +++ Q G + TH
Sbjct: 26 APPSKRTPAESITLTGTVFQGVTIYIVPAGIGKARCDIFHRQITQNGGQAVSTFAPSCTH 85
Query: 61 VL---AMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENI 117
V+ ++D + L+ + L +I+ WL + + + Y ++ PE +
Sbjct: 86 VVVDDSVDFKRALRLLKVDTLPS-AVHLIKCTWLSACISEKRLLDTEDYSLR-PPESPTV 143
Query: 118 ADRVLSQ---IQGNGNTSS-------DGESSHRKKIKSSTEDVEHFQAESKGDVETNALS 167
A S IQ ++ D H ++ + + E G V N L
Sbjct: 144 AAAEKSNEATIQPVPEVAAQDPLQILDNLDPHENLTETIPPETQEEYHEEDG-VSQNDLE 202
Query: 168 EAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRAL 227
+ SES + +++ P + + NK++T+ L Y
Sbjct: 203 ALISGVHPSESNQDQKQSSADKPVLPGKWVCSQPSTTKGENHNKHLTDKLEPLAKAYTHT 262
Query: 228 GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEK 287
G+ R+ Y KAI ++ I S ++ +PGIGK M D I EI+ +G L KL+H
Sbjct: 263 GDKWRALGYSKAINALKSYHKPITSYEEACKIPGIGKRMADKIMEIMESGHLRKLDHI-- 320
Query: 288 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIP 347
E+V + +F +WG G TAQ Y++G RTL+D++ + L H+ R+GLK++DD+ R+P
Sbjct: 321 GEEVPVLEMFTNIWGAGAKTAQMWYQQGFRTLEDIRTKAVLNHTLRIGLKHYDDLLERMP 380
Query: 348 RHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYV 407
R E +E+ ++ A V P+++ + GSYRRG+++CGD+DV+I HPD +SHKG SK +
Sbjct: 381 RSEANAIEKTVKDAAHSVDPQLLAMACGSYRRGRSTCGDVDVLITHPDGQSHKGVFSKVL 440
Query: 408 KKLKEMKFLREDLIFSTHSEE-------------------------VYPRDIYAFGLIAW 442
L + FL +DL+ +H E V P +A L+ +
Sbjct: 441 HLLHQSGFLTDDLV--SHEENGEQKKYMGICRLPGPSQLHRRLDIIVVPYSEFACALLYF 498
Query: 443 TGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFP 502
TG+ NR +R LA++K L + L A G + V A T L TEK VF LG P
Sbjct: 499 TGSAHFNRSMRALAKTKNMSLSEHSLNCAVIRQRGVKLV-AGTPLHTPTEKNVFQHLGIP 557
Query: 503 WLEPHERN 510
+ EPHER+
Sbjct: 558 YREPHERD 565
>gi|432847957|ref|XP_004066233.1| PREDICTED: DNA polymerase lambda-like [Oryzias latipes]
Length = 577
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 165/559 (29%), Positives = 271/559 (48%), Gaps = 57/559 (10%)
Query: 2 APKTTRKPTPA-LDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTH 60
AP +KP + F+ + V+L+ G+ N R QI+++++ QMG +E L VTH
Sbjct: 25 APPMKKKPDEIEVKGGNPFSRLTVYLLPAGIGNARCQIFQRQIQQMGGQLESSLCAAVTH 84
Query: 61 VL---AMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKL-DPEGEN 116
V+ +MD + +L+ + L +++ WL + + + D Y ++L D +G +
Sbjct: 85 VVVDDSMDGDRVLRLLKVDGLPSGV-HLVKCSWLSMCISERKLLDMDGYSLQLLDMDGYS 143
Query: 117 IADRVLSQIQGNGNTSSDGE-SSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMS 175
+ +L + S E + K I + D E Q + + T + +
Sbjct: 144 L---LLPKRSSESKLESVSEKQADFKSIAENFPDPETLQTKQEEAALTQTIPDTKEEVGG 200
Query: 176 SESLTN-----TLST----------ASASPD--------FSSHHITDPSLLYNPPDLNKN 212
E + L T AS +PD + S + NK+
Sbjct: 201 EEDCVSQSDLVALITGQHPEEESPGASGNPDPEAVVEKTVPGKWVCAQSSKSKTNNFNKH 260
Query: 213 ITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQE 272
IT+ L Y G+ R+ Y KA+ ++ + S + +PGIGK M D I E
Sbjct: 261 ITDKLELLAKAYTHQGDKWRALGYSKAVNALKSYHKPVTSYQEACQIPGIGKRMADKIDE 320
Query: 273 IVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQ 332
I+ +G L KL+H E V + LF +WG G TAQ Y++G RTL+D++ + L+ +Q
Sbjct: 321 IMESGHLRKLDHI--GEAVPVLELFTNIWGAGAKTAQLWYQQGFRTLEDIRTKARLSATQ 378
Query: 333 RLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIM 392
++GLK+++D R+PR E +E+++++A + P ++ + GSYRRGKA+CGD+DV+I
Sbjct: 379 KIGLKHYNDFLERMPREEAAAIEKVVREAVRTLDPGLVAVACGSYRRGKATCGDVDVLIT 438
Query: 393 HPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE---------------------VYP 431
HPD KSH+G SK ++ L + FL +DL+ + E + P
Sbjct: 439 HPDGKSHRGVFSKVLQILHDDGFLTDDLVSHEENGEQKKYMGVCRLPGHRHRRLDIIIVP 498
Query: 432 RDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDT 491
D +A L+ +TG+ NR +R LA++KG L + L G + V A + + T
Sbjct: 499 YDEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHSLNKDVVRQGTSK-VCAGSPVPTQT 557
Query: 492 EKEVFDFLGFPWLEPHERN 510
EK+VF LG P+ EPHER+
Sbjct: 558 EKDVFSLLGIPYREPHERD 576
>gi|154147652|ref|NP_001093716.1| DNA-directed DNA polymerase lambda [Xenopus (Silurana) tropicalis]
gi|134023891|gb|AAI35822.1| poll protein [Xenopus (Silurana) tropicalis]
Length = 577
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 162/558 (29%), Positives = 274/558 (49%), Gaps = 76/558 (13%)
Query: 14 DSNGIF-AGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLA---MDLEAL 69
D +GIF G+ +++ G+ R +I++++++Q G V + S +VTH++ MD +
Sbjct: 34 DIHGIFFEGVHAHILQAGIGLARSEIFQKQIIQNGGQVASQFSSEVTHIIVDEKMDCDRA 93
Query: 70 LQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLS-QIQGN 128
+ + + ++ +++ WL ++ + V+ YRI I DR L + Q
Sbjct: 94 FRVLKLEKISHHV-QLVKSAWLSLCIKEKQMVNTAGYRI-------FIPDRYLDLKDQAE 145
Query: 129 GNTSSDGESSHRKKIKSSTEDVEHF--QAESKGDVETNALSEAP--------NSPMSSES 178
S + + + RK+ +++ H + G+ +T +S+ P + S +
Sbjct: 146 KEQSCETKRNDRKQ----HDELPHAPDKLNQAGNPQTQHVSDLPLLNYSNTSKTQNSDDD 201
Query: 179 LTNTLSTASASPDFS---SHHITDPSLLYN--------------------PPDLNKNITE 215
+++T T D S DP+ + + + N+ IT+
Sbjct: 202 VSDTEDTGVTQGDLDALISGQRPDPTTVKSHRVPNTVTGKWVCAHSSESKKTNYNQFITD 261
Query: 216 IFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVT 275
L Y G+ RS Y KAI ++ + S ++ +PGIGK M + I+EI+
Sbjct: 262 KLEVLAKAYSVQGDRWRSLGYSKAINALKSYHKPVTSCEEAASIPGIGKKMAEKIEEILD 321
Query: 276 TGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLG 335
+G L KL+H + V + +F +WG G TAQ Y++G RTLDD++ + +LT Q +G
Sbjct: 322 SGHLRKLDHIS--DSVAVLEIFSNIWGAGVKTAQSWYQQGFRTLDDIRTKGNLTTQQAIG 379
Query: 336 LKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
LK++DD R+PR E ++E+ +++A V PE+I + GS+RRGKA+CGD+DV++ HPD
Sbjct: 380 LKHYDDFLDRMPRDEAGKIEQTVREAAHAVNPELICVACGSFRRGKATCGDVDVLVTHPD 439
Query: 396 RKSHKGFLSKYVKKLKEMKFLREDL--------------IFSTHSEE---------VYPR 432
KSH+G SK + LK FL +DL + S E V P
Sbjct: 440 GKSHRGVFSKLIDGLKAQGFLTDDLVNQEVNGNQKKYLGVCSLPGEGQRHRRLDIIVVPY 499
Query: 433 DIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTE 492
+A ++ +TG+ NR +R LA++KG L + L + + V A L TE
Sbjct: 500 GEFACAIMYFTGSAHFNRSMRALAKTKGMSLSEHSLNKNVVRNRSVK-VSAGCPLPTPTE 558
Query: 493 KEVFDFLGFPWLEPHERN 510
KE+F+ LG P+ EPHER+
Sbjct: 559 KEIFEILGLPFREPHERD 576
>gi|363735532|ref|XP_001232209.2| PREDICTED: DNA polymerase lambda [Gallus gallus]
Length = 543
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 158/535 (29%), Positives = 264/535 (49%), Gaps = 54/535 (10%)
Query: 24 VFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLA---MDLEALLQQVSKQHL-A 79
++++ G+ R +I+ +++VQ G V +L +VTHV+ MD + + + L +
Sbjct: 14 AYVLQAGIGQARAEIFHKQIVQNGGCVHNRLCSEVTHVIVAEDMDCDRAFRLLKLAKLPS 73
Query: 80 RFKGSVIRYQWLEDSLRLGEKVSEDLYRI----KLDPEGENIADRVLSQIQGNGNTSSDG 135
R + +++ WL D +R + ++ Y + + EGE + S+ + S
Sbjct: 74 RLQ--LVKASWLSDCIRDQKLLNTTGYSVFIPRRYREEGEQQQQLLGSEEIRSSTEESTA 131
Query: 136 ESSHRKKIKSSTED-----VEHFQAESKGDVETNALSEAPNSPMSSESL----------- 179
E + + ++ S++ +H +E D E + +A + E+L
Sbjct: 132 EPNAKAQLGDSSQQNLDSLAQHQPSEKVYDDEDSEGEDASVTQGDLEALISGHYPVKLSE 191
Query: 180 -TNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYK 238
T+ S+A A P +S + S + N+ ITE L Y G+ R+ Y K
Sbjct: 192 ETSDSSSAVAQP--ASKWVCAQSSNSKKENHNQCITEKLEVLAKAYSVQGDKWRALGYAK 249
Query: 239 AIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFG 298
AI ++ + S + +PGIGK M + I EI+ +G L KL+H E V + LF
Sbjct: 250 AINALKSYHKPVTSYQEACKIPGIGKRMAEKILEILESGHLRKLDHI--SESVPVLELFS 307
Query: 299 EVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLL 358
+WG G TAQ Y++G RTLDD++ + SLT Q +GLK+++D R+PR E ++E+ +
Sbjct: 308 NIWGAGVKTAQMWYQQGFRTLDDIRTKASLTSQQAVGLKHYEDFLERMPREEAAEIEQTV 367
Query: 359 QKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLRE 418
++A + P ++ + GSYRRGKA+CGD+DV++ HPD +SH+G SK + L E FL +
Sbjct: 368 RQAALALKPGLVCVACGSYRRGKATCGDVDVLVTHPDGQSHRGLFSKLLDSLHESGFLTD 427
Query: 419 DLIFSTHSEE-----------------------VYPRDIYAFGLIAWTGNDVLNRRLRLL 455
DL+ + + V P +A L+ +TG+ NR +R L
Sbjct: 428 DLVSQEDNGDQKKYLGVCRLPGPARRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRAL 487
Query: 456 AESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
A++KG L + L A G V + +L TE++VF LG P+ EP ER+
Sbjct: 488 AKTKGMSLSEHALSMAVVRGPGGVKVASGHALPTPTERDVFIQLGLPYREPSERD 542
>gi|395502283|ref|XP_003755511.1| PREDICTED: DNA polymerase lambda [Sarcophilus harrisii]
Length = 565
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 150/535 (28%), Positives = 258/535 (48%), Gaps = 41/535 (7%)
Query: 13 LDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEAL 69
L+ + ++V ++ G+ R +I+ ++++Q G + + +TH++ A+D E
Sbjct: 34 LEGGEWLSPLQVHVLPAGIGRARAEIFEKQIIQHGGRICSPQAPGITHIVVDEAVDCERA 93
Query: 70 LQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQ-GN 128
L+ + L +++ WL L+ + V + I + + D ++ Q G
Sbjct: 94 LRLLKLSQLP-LGVQIVKSAWLSQCLQEQKLVDTAGFSIFIPDRYLDETDNQVTSFQPGC 152
Query: 129 GNTSSDGESSHRKKIKSSTEDVEHFQAESKGD-VETNALSEAPNSPMSSESLTN----TL 183
TS+ E +++ + E++ E +P E+L +
Sbjct: 153 SGTSAQAGLPSAAAFAPPQEPHSELNTQTQPNSYESSDEEEVQVTPADLEALITGRYPST 212
Query: 184 STASASPDFSSHHITDPSLLYNPP-----DLNKNITEIFGKLINIYRALGEDRRSFSYYK 238
A P + ++D + P + N +ITE L Y G+ RS SY K
Sbjct: 213 PEGDAMPCLAPT-VSDKWVCAQPSSQKRTNHNSHITEKLEVLAKAYAVQGDRWRSLSYSK 271
Query: 239 AIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFG 298
AI ++ + S + G+PGIGK M + I EIV +G L KL+H + V + LF
Sbjct: 272 AINALKSFHKPVSSYQEACGIPGIGKRMAEKIMEIVESGHLRKLDHI--SDSVPVLELFS 329
Query: 299 EVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLL 358
+WG+G TAQ Y++G RTL+D+++ +LT Q +GLK+++D RIPR E ++E+ +
Sbjct: 330 NIWGVGSKTAQMWYQQGFRTLEDIESRATLTSQQAIGLKHYEDFLKRIPREEASEIEQTV 389
Query: 359 QKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLRE 418
++A + P ++ + GSYRRGKA+CGD+DV++ HPD +SH+G + + L++ FL +
Sbjct: 390 REAAHALNPGLLSVACGSYRRGKATCGDVDVLVTHPDGRSHQGIFGQLLDTLRQQGFLTD 449
Query: 419 DLIFSTHSEE-----------------------VYPRDIYAFGLIAWTGNDVLNRRLRLL 455
DL+ + + V P +A L+ +TG+ NR +R L
Sbjct: 450 DLVSQDDNGQQQKYLGVCRLPGPGRLHRRLDIIVVPYSEFACALLYFTGSAYFNRSMRAL 509
Query: 456 AESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
A++KG L + L+ A G V +L TEK+VF LG P+ EP ER+
Sbjct: 510 AKTKGMSLSERSLYTAVVRDGRGLKVGPGRALPTPTEKDVFRLLGLPYREPSERD 564
>gi|440912422|gb|ELR61992.1| DNA polymerase lambda [Bos grunniens mutus]
Length = 575
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 166/557 (29%), Positives = 259/557 (46%), Gaps = 88/557 (15%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +RV ++ G+ R +++ +++VQ G + + VTH++ MD E L+ +
Sbjct: 41 LSSVRVHVLPTGIGRARAELFEKQIVQHGGQICPAQAPGVTHIVVDEGMDCERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSL---RLGEKVSEDLYRIK--LDPEGENIADRVLSQIQGNG- 129
L +++ WL L RL + ++ K LD + D+V G G
Sbjct: 101 PQLPP-GAQLVKSAWLSSCLQERRLVDTAGFGIFTPKRYLDQAQLSKTDQVSFTPPGAGE 159
Query: 130 -------------------------------NTSSDGESSHRKKIKSSTEDVEHFQAESK 158
TSSDGE+S ++ + S D+E A
Sbjct: 160 AQPRTALSPSRPPTRPVSPSWRADAVASIQAQTSSDGEASDGEETQVSAADLE---ALIS 216
Query: 159 GDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFG 218
G T + SP + ESL + +S +H N +ITE
Sbjct: 217 GRYPTPFEGDGEPSP-APESLDKWVCAQPSSQKAINH--------------NPHITEKLE 261
Query: 219 KLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGK 278
L Y G+ R+ Y KAI ++ + S + G+PGIGK M + I EI+ +G
Sbjct: 262 VLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEAFGIPGIGKRMAEKIVEILESGH 321
Query: 279 LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKY 338
L KL+H E V + LF +WG G TAQ Y +G R+L+D++N+ LT Q +GLK+
Sbjct: 322 LRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYHQGFRSLEDIRNQACLTTQQAIGLKH 379
Query: 339 FDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKS 398
+DD R+PR E ++E+ ++KA + + P ++ + GSYRRGKA+CGD+DV++ HPD +S
Sbjct: 380 YDDFLDRMPREEAAEIEQTVRKAAQALNPGLLCVACGSYRRGKATCGDMDVLLTHPDGRS 439
Query: 399 HKGFLSKYVKKLKEMKFLREDLIFSTHSEE-------------------------VYPRD 433
H+G S+ + L++ FL +DL+ +H E V P
Sbjct: 440 HQGVFSRLLDSLRQQGFLTDDLV--SHEENGQQQKYLGVCQLPGPGRRHRRLDIIVVPYS 497
Query: 434 IYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEK 493
A L+ +TG+ NR +R LA++KG L + L A S V + L TEK
Sbjct: 498 ELACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRSAQGLKVGSGQVLPTPTEK 557
Query: 494 EVFDFLGFPWLEPHERN 510
+VF FLG P+ EP ER+
Sbjct: 558 DVFRFLGLPYREPAERD 574
>gi|300796521|ref|NP_001179488.1| DNA polymerase lambda [Bos taurus]
gi|296472781|tpg|DAA14896.1| TPA: polymerase (DNA directed), lambda [Bos taurus]
Length = 575
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 166/557 (29%), Positives = 259/557 (46%), Gaps = 88/557 (15%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +RV ++ G+ R +++ +++VQ G + + VTH++ MD E L+ +
Sbjct: 41 LSSVRVHVLPTGIGRARAELFEKQIVQHGGQICPAQAPGVTHIVVDEGMDCERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSL---RLGEKVSEDLYRIK--LDPEGENIADRVLSQIQGNG- 129
L +++ WL L RL + ++ K LD + AD+V G G
Sbjct: 101 PQLPP-GAQLVKSAWLSSCLQERRLVDTAGFGIFTPKRYLDQAQLSKADQVSFTPPGAGE 159
Query: 130 -------------------------------NTSSDGESSHRKKIKSSTEDVEHFQAESK 158
TSSDGE+S ++ + S D+E A
Sbjct: 160 AQPRTALSPSRPPTRPVSPSWRADAVASIQAQTSSDGEASDGEETQVSAADLE---ALIS 216
Query: 159 GDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFG 218
G T + SP + E L + +S +H N +ITE
Sbjct: 217 GRYPTPFEGDGEPSP-APEGLDKWVCAQPSSQKAINH--------------NPHITEKLE 261
Query: 219 KLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGK 278
L Y G+ R+ Y KAI ++ + S + G+PGIGK M + I EI+ +G
Sbjct: 262 VLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEAFGIPGIGKRMAEKIVEILESGH 321
Query: 279 LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKY 338
L KL+H E V + LF +WG G TAQ Y +G R+L+D++N+ LT Q +GLK+
Sbjct: 322 LRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYHQGFRSLEDIRNQACLTTQQAIGLKH 379
Query: 339 FDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKS 398
+DD R+PR E ++E+ ++KA + + P ++ + GSYRRGKA+CGD+DV++ HPD +S
Sbjct: 380 YDDFLDRMPREEAAEIEQTVRKAAQALNPGLLCVACGSYRRGKATCGDMDVLLTHPDGRS 439
Query: 399 HKGFLSKYVKKLKEMKFLREDLIFSTHSEE-------------------------VYPRD 433
H+G S+ + L++ FL +DL+ +H E V P
Sbjct: 440 HQGVFSRLLDSLRQQGFLTDDLV--SHEENGQQQKYLGVCQLPGPGRRHRRLDIIVVPYS 497
Query: 434 IYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEK 493
A L+ +TG+ NR +R LA++KG L + L A S V + L TEK
Sbjct: 498 ELACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRSAQGLKVGSGQVLPTPTEK 557
Query: 494 EVFDFLGFPWLEPHERN 510
+VF FLG P+ EP ER+
Sbjct: 558 DVFRFLGLPYREPAERD 574
>gi|410918281|ref|XP_003972614.1| PREDICTED: DNA polymerase lambda-like [Takifugu rubripes]
Length = 565
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 159/536 (29%), Positives = 266/536 (49%), Gaps = 49/536 (9%)
Query: 15 SNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLA---MDLEALLQ 71
+ FAG+ +++ G+ N R QI+++++ Q G E LS +THV+ MD++ ++
Sbjct: 38 TGNTFAGVTAYVLPAGIGNARHQIFQRQIKQNGGQTENALSPGITHVIVDDNMDVDRAVR 97
Query: 72 QVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKL-DPEGENIADRV-----LSQI 125
+ K +++ WL S+ + EK D+ R L P E+ R + +
Sbjct: 98 LL-KVPCVPPGVHLVKCTWL--SMCISEKKLLDVGRYSLLSPMRESETGREDVPCEKASV 154
Query: 126 QGNGNTSSD--GESSHRKKIKSSTEDVEHFQAE----SKGDVETNALSEAPNSPMSSESL 179
+ T+SD + + + I + + + Q E S+ D+E + P + +
Sbjct: 155 ENTLETASDRPDQVTQEEPINVTEPESKAVQGEEDLVSQNDLEALMSGQHPKEKTTVSNH 214
Query: 180 TNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKA 239
L A+A + S + NK+IT+ L Y G+ R+ Y KA
Sbjct: 215 GPDLE-AAAQQVVPGKWVCAQSSQSKSNNFNKHITDKLEILAKAYTHQGDKWRALGYSKA 273
Query: 240 IPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGE 299
+ ++ + S + +PGIGK M D I EI+ +G L KL+H E V + LF
Sbjct: 274 VNALKSHHKPVTSYQEACQIPGIGKRMADKIDEIMESGHLRKLDHI--GEAVPVLELFTN 331
Query: 300 VWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQ 359
+WG G TAQ Y++G RTL+D++ + L+ +Q++GLK++DD R+PR E +E++++
Sbjct: 332 IWGAGAKTAQLWYQQGFRTLEDIRTKAHLSSTQKIGLKHYDDFLDRMPREEAAAIEKVVR 391
Query: 360 KAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLRED 419
A V P ++++ GSYRRGKA+CGD+DV+I HPD KSHKG +K ++ L + FL +D
Sbjct: 392 DAALAVDPHLVVMACGSYRRGKATCGDVDVLISHPDGKSHKGVFTKVLQSLHDSGFLTDD 451
Query: 420 LIFSTHSEE-------------------------VYPRDIYAFGLIAWTGNDVLNRRLRL 454
L+ +H E V P + +A L+ +TG+ NR +R
Sbjct: 452 LV--SHEENGEQKKYMGVCRLPGPGQRHRRLDVIVVPYNEFACALMYFTGSAHFNRSMRA 509
Query: 455 LAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
LA++K L + L G + V L TE++VF+ LG P+ +P+ER+
Sbjct: 510 LAKTKSMSLSEHSLNKNVVRKGSVK-VFGGAPLATLTERDVFNLLGVPYRQPNERD 564
>gi|426252963|ref|XP_004020172.1| PREDICTED: DNA polymerase lambda isoform 1 [Ovis aries]
Length = 575
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 163/550 (29%), Positives = 259/550 (47%), Gaps = 74/550 (13%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +RV +V G+ R +++ +++VQ G + + VTH++ MD E L+ +
Sbjct: 41 LSSLRVHVVPTGIGRARAELFEKQIVQHGGQICPAQAPGVTHIVVDEGMDCERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSL---RLGEKVSEDLYRIK--LDPEGENIADRVLSQIQGNGN 130
+++ WL L RL + ++ K LD + AD+V +
Sbjct: 101 P-QLPPGAQLVKSAWLSLCLQERRLVDTAGFGIFTPKRYLDQAQLSKADQV------SFT 153
Query: 131 TSSDGESSHRKKIKSS------------TEDVEHFQAESKGDVETNALSEAPNSPMSSES 178
GE+ R + S T+ V QA++ D ET+ E S E+
Sbjct: 154 PPRAGEAQPRTALSPSRPLTRHVSPSWRTDAVASIQAQTSSDGETSDGEEPQVSAADLEA 213
Query: 179 LTNTL--------STASASPD-----FSSHHITDPSLLYNPPDLNKNITEIFGKLINIYR 225
L + S +P+ + + ++ YNP +ITE L Y
Sbjct: 214 LISGRYPTPFEGDDEPSPAPEGLGKWVCAQPSSQKAINYNP-----HITEKLEVLAKAYS 268
Query: 226 ALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF 285
G+ R+ Y KAI ++ + S + G+PGIGK M + I EI+ +G L KL+H
Sbjct: 269 VQGDKWRALGYAKAINALKSFHKPVSSYQEAFGIPGIGKRMAEKIVEILESGHLRKLDHI 328
Query: 286 EKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTR 345
E V + LF +WG G TAQ Y +G R L+D++N LT Q +GLK++DD R
Sbjct: 329 --SESVPVLELFSNIWGAGTKTAQMWYHQGFRCLEDIRNHACLTTQQAIGLKHYDDFLDR 386
Query: 346 IPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSK 405
+PR E ++E+ +++A + + P ++ + GSYRRGKA+CGD+DV++ HPD +SH+G S+
Sbjct: 387 MPREEAAEIEQTVREAAQALNPGLLCVACGSYRRGKATCGDMDVLLTHPDGRSHQGVFSR 446
Query: 406 YVKKLKEMKFLREDLIFSTHSEE-------------------------VYPRDIYAFGLI 440
+ L++ FL +DL+ +H E V P A L+
Sbjct: 447 LLDSLRQQGFLTDDLV--SHEENGQQQKYLGVCQLPGPGRRHRRLDIIVVPYSELACALL 504
Query: 441 AWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLG 500
+TG+ NR +R LA++KG L + L A S V + L TEK+VF FLG
Sbjct: 505 YFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRSAQGLKVGSGQVLPTPTEKDVFRFLG 564
Query: 501 FPWLEPHERN 510
P+ EP ER+
Sbjct: 565 LPYREPAERD 574
>gi|126273242|ref|XP_001369819.1| PREDICTED: DNA polymerase lambda [Monodelphis domestica]
Length = 564
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 150/535 (28%), Positives = 253/535 (47%), Gaps = 60/535 (11%)
Query: 22 MRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLA---MDLEALLQQVSKQHL 78
++V ++ G+ R +I+ ++++Q G + + +TH++ +D E L+ + L
Sbjct: 43 LQVHVLPVGIGRARAEIFEKQIIQHGGQICSPQAPGITHIVVDETVDGERALRLLKLPQL 102
Query: 79 ARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQ-GNGNTSSDGES 137
+++ WL L+ + V D + + P D+ Q G TS+
Sbjct: 103 P-LGAQLVKSAWLSQCLKEQKLVDTDGFHVVFIPN--RYLDKADISFQPGPSGTSAQAGL 159
Query: 138 SHRKKIKSSTEDVEHFQAESKG-----------------DVETNALSEAPNSPM--SSES 178
S + E +++ D+E P++P + S
Sbjct: 160 SSVAPLAPPQEPHSRLGIQAQANSDDEDSDEEEVRVTPDDLEALITGRYPSTPEGDTEPS 219
Query: 179 LTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYK 238
L LS SS +T+ +L +ITE L Y G+ R+ Y K
Sbjct: 220 LAPNLSEKWVCAQPSSQKMTNHNL---------HITEKLEVLAKAYAVQGDRWRTLGYSK 270
Query: 239 AIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFG 298
AI ++ P + S + G+PGIGK M + I EIV +G L KL+H + V + LF
Sbjct: 271 AINALKSFPKPVSSYQEACGIPGIGKRMAEKIMEIVESGHLRKLDHI--SDSVPILELFS 328
Query: 299 EVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLL 358
+WG+G TAQ Y++G RTL+D++++ +L+ Q +GLK+++D RIPR E ++E+ +
Sbjct: 329 NIWGVGAKTAQMWYQQGFRTLEDIQSQATLSTQQAIGLKHYEDFLKRIPREEAAEIEKTV 388
Query: 359 QKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLRE 418
++ + P ++ + GSYRRGKA+CGD+DV++ HPD +SH+G S+ + L++ FL +
Sbjct: 389 RETAHTLNPGLLSVACGSYRRGKATCGDVDVLVTHPDGRSHQGIFSQLLDALRKRGFLTD 448
Query: 419 DLIFSTHSEE-----------------------VYPRDIYAFGLIAWTGNDVLNRRLRLL 455
DL+ + + V P +A L+ +TG+ NR +R L
Sbjct: 449 DLVSQDDNGQQQKYLGVCQLPGPGRHHRRLDIIVVPYSEFACALLYFTGSAYFNRSMRAL 508
Query: 456 AESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
A++KG L + L A G V +L TEK+VF LG P+ EP ER+
Sbjct: 509 AKTKGMSLSEHALSTAIVRDGHGVKVGPGRALPTPTEKDVFKLLGLPYREPSERD 563
>gi|73998286|ref|XP_850651.1| PREDICTED: DNA polymerase lambda isoform 2 [Canis lupus familiaris]
Length = 576
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 159/552 (28%), Positives = 257/552 (46%), Gaps = 77/552 (13%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ ++++Q G + + +TH++ MD E L+ V
Sbjct: 41 LSSLRAHVVPSGIGRARAELFEKQIIQHGGQICAAHASGLTHIVVDEGMDGERALRLVGL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDG 135
L + +++ WL L+ G V + I + + Q+ S
Sbjct: 101 SQLPQ-GAQLVKSTWLSLCLQEGRLVDTAGFSICIPSRYPGLQ----PQLSKADQEFSAP 155
Query: 136 ESSHRKKIKSS----------------TEDVEHFQAESKGDVETNALSEAPNSPMSSESL 179
SH +K++ TE+ QA+ D ET+ E S E+L
Sbjct: 156 PGSHEALLKTALTPPRSATRPVSPPQRTEEAPSTQAQLGSDAETSDGEETQVSAADLEAL 215
Query: 180 TNTLSTASASPDFSSHHITDPSLLYNPPDLNK----------------NITEIFGKLINI 223
S +S+H D P L+K +ITE L
Sbjct: 216 I--------SGHYSTHPEGDDDPRPAPKGLDKWVCAQPSSQKAVNHNPHITEKLEVLAKA 267
Query: 224 YRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLE 283
Y G+ R+ Y KAI ++ + S + G+PGIGK M + I EI+ +G L KL+
Sbjct: 268 YSVQGDKWRALGYAKAINALKSFHKPVTSYQEAFGIPGIGKRMAEKIVEILESGHLRKLD 327
Query: 284 HFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIK 343
H E V + LF +WG G TAQ Y++G+RTL+D++N+ SLT Q +GLK++DD
Sbjct: 328 HI--SESVPILELFSNIWGAGTKTAQMWYQQGYRTLEDIRNQASLTTQQAIGLKHYDDFL 385
Query: 344 TRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFL 403
RIPR E ++E+ ++K+ + P ++ + GSYRRGKA+CGD+DV++ HPD +SH+G
Sbjct: 386 ERIPREEATEIEQTVRKSAQAFNPGLLCVACGSYRRGKATCGDVDVLLTHPDGQSHQGIF 445
Query: 404 SKYVKKLKEMKFLREDLIFSTHSEE-----------------------VYPRDIYAFGLI 440
S+ + L+ FL +DL+ + + + P +A L+
Sbjct: 446 SRLLDSLRRQGFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLDIIIVPYSEFACALL 505
Query: 441 AWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTS--LKFDTEKEVFDF 498
+TG+ NR +R LA++KG L + L +T QG++ L TEK+VF
Sbjct: 506 YFTGSAHFNRSMRALAKTKGMSLSEHAL--STSVVRDTQGLKVGPGRVLPTPTEKDVFRL 563
Query: 499 LGFPWLEPHERN 510
LG P+ EP ER+
Sbjct: 564 LGLPYREPVERD 575
>gi|291404681|ref|XP_002718713.1| PREDICTED: DNA-directed DNA polymerase lambda [Oryctolagus
cuniculus]
Length = 575
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 158/560 (28%), Positives = 257/560 (45%), Gaps = 100/560 (17%)
Query: 22 MRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLA-MDLEALLQQVSKQHLAR 80
+RV +V G+ R +++ +++VQ G V + VTH++ D++ +
Sbjct: 44 LRVHVVPTGIGRARAELFEKQVVQHGGQVCPAQAPGVTHIVVDEDVDCERALRLLRLPRL 103
Query: 81 FKGS-VIRYQWLEDSLRLGEK----------------------------------VSEDL 105
G+ +++ WL SL L E+ E L
Sbjct: 104 PAGARLVKSAWL--SLCLQEQRLVDTAGFQVFVPSRYLDQPQPSKADGDSSPPPGTHEAL 161
Query: 106 YRIKLDPEGENIADRVLSQIQGNGNT-----SSDGESSHRKKIKSSTEDVE-----HFQA 155
R L P L G + +SD E+S ++ + S D+E H+
Sbjct: 162 LRTALSPASPPTRPGALPPKAGKAPSTQAQPASDDEASDGEEPQVSAADLEALLSGHYPT 221
Query: 156 ESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITE 215
+GD E S AP E+L + +S ++H N +ITE
Sbjct: 222 RPEGDAEP---SPAP------EALEKWVCAQPSSQKATNH--------------NSHITE 258
Query: 216 IFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVT 275
L Y G+ R+ Y KAI ++ P + S + +PG+GK M + I EI+
Sbjct: 259 KLEVLAKAYSVQGDKWRALGYAKAINALKSFPKPVSSYQEACSIPGVGKRMAEKIVEILE 318
Query: 276 TGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLG 335
+G L KL+H E V + LF +WG G TAQ Y++G R+L+D++++ SLT Q +G
Sbjct: 319 SGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIG 376
Query: 336 LKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
LK++DD R+PR E ++E+ +++A + P ++ + GS+RRGKA+CGD+DV+I HPD
Sbjct: 377 LKHYDDFLERMPREEAAEIEQTVREAAQAFNPGLLCVACGSFRRGKATCGDVDVLITHPD 436
Query: 396 RKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE-------------------------VY 430
++H+G S+ + L++ FL +DL+ +H E +
Sbjct: 437 GRAHQGIFSRLLDSLRQRGFLTDDLV--SHEENGLQQKYLGVCRLPGPGRRHRRLDIIIV 494
Query: 431 PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFD 490
P +A L+ +TG+ NR +R LA++KG L + L A + V +L
Sbjct: 495 PYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHTLSMAVVRNSRGCKVAPGQALPTP 554
Query: 491 TEKEVFDFLGFPWLEPHERN 510
TEK+VF LG P+ EP ER+
Sbjct: 555 TEKDVFRLLGLPYREPAERD 574
>gi|302766281|ref|XP_002966561.1| hypothetical protein SELMODRAFT_86291 [Selaginella moellendorffii]
gi|300165981|gb|EFJ32588.1| hypothetical protein SELMODRAFT_86291 [Selaginella moellendorffii]
Length = 310
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 124/307 (40%), Positives = 181/307 (58%), Gaps = 27/307 (8%)
Query: 226 ALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF 285
LG+ RS Y K + + LP+K+ S +Q++ + G+GKS+ ++EI+ TG+L KL++
Sbjct: 8 VLGDQWRSLIYRKTVNKLRSLPYKVTSVEQIREMYGVGKSLVKMVKEILGTGQLQKLDNL 67
Query: 286 EKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTR 345
+ +V I + G VWGIG A++LY+KG RT+ DL+N SLT QR+G+KY+DDI R
Sbjct: 68 K--AQVGEIQVLGSVWGIGAIQARELYKKGFRTVKDLENYSSLTSMQRMGVKYYDDINLR 125
Query: 346 IPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD---------- 395
IPR EV E+ ++ E + P + GSYRRGK +CGD+D++I HPD
Sbjct: 126 IPRDEVADTEKFVRGVVETLAPGAWVNAAGSYRRGKPTCGDVDILITHPDGSRFTSLRCC 185
Query: 396 -RKSHKGFLSKYVKKLKEMKFLREDL---IFSTHSE-------EVYPRDIYAFGLIAWTG 444
SH L + L + + D+ IF + +VYPR +YAF L+A+TG
Sbjct: 186 THSSHLHLLCSHQDLLARLGGTQPDMFMGIFHFQGKPYRRIDIKVYPRHVYAFALLAFTG 245
Query: 445 NDVLNRRLRLLAESK-GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPW 503
NDVLNR++R LA K GY+L D GLF K+ V S+ +TE+E+F+ LG +
Sbjct: 246 NDVLNRKIRFLARVKFGYKLSDQGLFIR---ESKKKDVWFTESIPCETEREIFEKLGLDY 302
Query: 504 LEPHERN 510
EPH+RN
Sbjct: 303 PEPHDRN 309
>gi|326923796|ref|XP_003208120.1| PREDICTED: DNA polymerase lambda-like [Meleagris gallopavo]
Length = 576
Score = 221 bits (563), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 164/541 (30%), Positives = 268/541 (49%), Gaps = 65/541 (12%)
Query: 24 VFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLA---MDLEALLQQVSKQHL-A 79
++++ + R +I+ +++VQ G V +L +VTHV+ MD + + + L +
Sbjct: 46 AYVLQASIGQARAEIFHKQIVQNGGFVHSRLCSEVTHVIVAEDMDCDRAFRLLKLAKLPS 105
Query: 80 RFKGSVIRYQWLEDSLRLGEKVSEDLYRI----KLDPEGENI------ADRVLSQIQGN- 128
R + +++ WL D +R + ++ Y + + EGE ++ + S +G+
Sbjct: 106 RLQ--LVKASWLSDCIRDQKLLNTAGYSVFIPRRYREEGEQQQQQFLGSEEIQSSTEGSA 163
Query: 129 ---------GNTSSDGESSHRKKIKSST----EDVEHFQAE-SKGDVETNALSEAPNSPM 174
G++S S ++ S ED E A ++GD+E AL + P+
Sbjct: 164 AEPNVKAQVGDSSQQNPGSLAQQQPSEKVYDDEDSEGEDASVTQGDLE--ALISG-HYPV 220
Query: 175 SSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSF 234
T+ S+A A P S + S + N+ ITE L Y G+ R+
Sbjct: 221 KLSEETSGSSSAVAQP--VSKWVCAQSSHSKKENHNQCITEKLEVLAKAYSVQGDKWRAL 278
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H E V +
Sbjct: 279 GYAKAINALKSYHKPVTSYQEACKIPGIGKRMAEKILEILESGHLRKLDHI--SESVPVL 336
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQM 354
LF +WG G TAQ Y++G RTLDD++ + SLT Q +GLK+++D R+PR E ++
Sbjct: 337 ELFSNIWGAGVKTAQMWYQQGFRTLDDIRTKASLTSQQAVGLKHYEDFLERMPREEAAEI 396
Query: 355 ERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMK 414
E+ +++A + P ++ + GSYRRGKA+CGD+DV++ HPD +SH+G SK + L E
Sbjct: 397 EQTVRQAALALKPGLVCVACGSYRRGKATCGDVDVLVTHPDGQSHRGLFSKLLDNLHESG 456
Query: 415 FLREDLIFSTHSEE-----------------------VYPRDIYAFGLIAWTGNDVLNRR 451
FL +DL+ + E V P +A L+ +TG+ NR
Sbjct: 457 FLTDDLVSQEDNGEQKKYLGVCRLPGPARRHRRLDIIVVPYSEFACALLYFTGSAHFNRS 516
Query: 452 LRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTS--LKFDTEKEVFDFLGFPWLEPHER 509
+R LA++KG L + L A G +GV+ + L TE++VF LG P+ EP ER
Sbjct: 517 MRALAKTKGMSLSEHALSMAVV--RGPRGVKMASGHVLPTPTERDVFTQLGLPYREPSER 574
Query: 510 N 510
+
Sbjct: 575 D 575
>gi|311705739|gb|ADQ01135.1| DNA polymerase lambda [Alouatta sara]
Length = 575
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 159/544 (29%), Positives = 257/544 (47%), Gaps = 62/544 (11%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ +++VQ G + + VTH++ MD E L +
Sbjct: 41 LSSLRAHVVRTGIGRARAELFEKRIVQHGGQLCPAQAPGVTHIVVDDGMDYERALCLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNT--SS 133
L + +++ WL SL L E+ D+ + I R L Q Q + SS
Sbjct: 101 PQLPQ-GAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPSRYLDQPQPSKTEQDSS 152
Query: 134 DGESSHRKKIKSS----------------TEDVEHFQAESKGDVETNALSEAPNSPMSSE 177
+H ++++ ++ + QA+ D ET+ E S E
Sbjct: 153 IPSGTHEALLQTALFPPPSPTRPVSPPQKAKEAPNTQAQPISDDETSDGEETQVSTADLE 212
Query: 178 SLTNTLSTASASPDFS---SHHITDPSLLYNPP-----DLNKNITEIFGKLINIYRALGE 229
+L + S D + + D + P + N +ITE L Y G+
Sbjct: 213 ALISGHYPTSIEGDCEPRVAPEVLDKWVCAQPSSQKVTNHNLHITEKLEVLAKAYSVQGD 272
Query: 230 DRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDE 289
R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H E
Sbjct: 273 KWRALGYAKAINALKSFHKPVTSYQEACRIPGIGKRMAEKIVEILESGHLRKLDHI--SE 330
Query: 290 KVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRH 349
V + LF +WG G TAQ Y++G R+L+D++++ SLT Q +GLK++DD R+PR
Sbjct: 331 SVPVLELFSNIWGAGSKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYDDFLERMPRE 390
Query: 350 EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKK 409
E ++E+ +QKA + P ++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ +
Sbjct: 391 EATEIEQTVQKAAQAFNPRLLCVACGSYRRGKATCGDVDVLITHPDGRSHQGIFSRLLDS 450
Query: 410 LKEMKFLREDLIFSTHSEE-----------------------VYPRDIYAFGLIAWTGND 446
L++ FL +DL+ + + V P +A L+ +TG+
Sbjct: 451 LRQQGFLTDDLVSQEENGQQQKYLGVCRLPGPGHRHRRLDIIVVPYSEFACALLYFTGSA 510
Query: 447 VLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEP 506
NR +R LA++KG L + L A + V L TEK+VF LG P+ EP
Sbjct: 511 HFNRSMRALAKTKGMSLSEHALSTAVVRNPQGCKVAPGRVLPTPTEKDVFRLLGLPYREP 570
Query: 507 HERN 510
ER+
Sbjct: 571 AERD 574
>gi|311705751|gb|ADQ01141.1| DNA polymerase lambda [Callicebus cupreus]
Length = 575
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 158/544 (29%), Positives = 260/544 (47%), Gaps = 62/544 (11%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ +++VQ G + + VTH++ MD E L+ +
Sbjct: 41 LSSLRAHVVCTGIGRARAELFEKQIVQHGGQLCPAQAPDVTHIVVDDGMDYERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNT--SS 133
L + +++ WL SL L E+ D+ + I R L Q Q + SS
Sbjct: 101 PQLPQ-GAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPSRYLDQPQPSKTEQDSS 152
Query: 134 DGESSHRKKIKSS----------------TEDVEHFQAESKGDVETNALSEAPNSPMSSE 177
+H ++++ + + QA+ D ET+ E S E
Sbjct: 153 IPSGTHEALLQTALFPPPSPTRPVFPPQKAKGAPNTQAQPISDDETSDGEETQVSTADLE 212
Query: 178 SLTNTLSTASASPDF---SSHHITDPSLLYNP-----PDLNKNITEIFGKLINIYRALGE 229
+L + S D+ + + D + P + N +ITE L Y G+
Sbjct: 213 ALISGHYPTSIEGDYEPRPTPEVLDKWVCAQPSSQKVANHNLHITEKLEVLAKAYSVQGD 272
Query: 230 DRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDE 289
R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H E
Sbjct: 273 KWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIVEILESGHLRKLDHI--SE 330
Query: 290 KVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRH 349
+V + LF +WG G TAQ Y++G R+L+D++++ SLT Q +GLK++DD R+PR
Sbjct: 331 RVPVLELFSNIWGAGSKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYDDFLERMPRE 390
Query: 350 EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKK 409
E ++E+ +QKA + P ++ + GSYRRGKA+CGD+D++I HPD +SH+G S+ + +
Sbjct: 391 EATEIEQTVQKAAQAFNPRLLCVACGSYRRGKATCGDVDMLITHPDGRSHQGIFSRLLDR 450
Query: 410 LKEMKFLREDLIFSTHSEE-----------------------VYPRDIYAFGLIAWTGND 446
L++ FL +DL+ + + V P +A L+ +TG+
Sbjct: 451 LRQQGFLTDDLVSQEENGQQQKYLGVCRLPGPGQRHRRLDIIVVPYSEFACALLYFTGSA 510
Query: 447 VLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEP 506
NR +R LA++KG L + L A + V L TEK+VF LG P+ EP
Sbjct: 511 HFNRSMRALAKTKGMSLSEHALSTAVVRNPQGCKVGLGRVLPTPTEKDVFRLLGLPYREP 570
Query: 507 HERN 510
ER+
Sbjct: 571 AERD 574
>gi|351715599|gb|EHB18518.1| DNA polymerase lambda [Heterocephalus glaber]
Length = 572
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 159/566 (28%), Positives = 256/566 (45%), Gaps = 75/566 (13%)
Query: 2 APKTTRKPTPALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHV 61
AP K +S + +RV +V G+ R +++ ++++Q G + + VTH+
Sbjct: 24 APAKIPKRQEGEESGEWLSSLRVHVVPTGIGRTRAELFEKQIIQHGGQICPAQAPGVTHI 83
Query: 62 L---AMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRI-----KLD-- 111
+ AMD E L+ + +++ WL L+ V + I LD
Sbjct: 84 VVDEAMDCERALRLLRLP-WLPPGTQLVKSAWLSLCLQERRLVDTASFSILIPNRNLDQP 142
Query: 112 -----------PEG--ENIADRVLSQIQGNGNTSSDGESSHRKKIKSS----TEDVEHFQ 154
P G E + S + G + E + + + S T DVE Q
Sbjct: 143 QPTKAEQDSSAPPGSHEVLLKTAFSSLSGAVSPPQKAEEASSTQAQPSSNDETSDVEGPQ 202
Query: 155 AESKGDVETNALSEAPNSP-------MSSESLTNTLSTASASPDFSSHHITDPSLLYNPP 207
S D+E P P + E+L + +S ++H
Sbjct: 203 V-SAADLEALISGNYPTPPEENSGPGPAPEALDKWVCAQPSSQKVTNH------------ 249
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N +ITE L+N Y G+ R+ Y KAI ++ + S + +PG+GK M
Sbjct: 250 --NLHITEKLEVLVNAYSVQGDKWRALGYTKAISALKSFHKPVSSYQEACSIPGVGKRMA 307
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
+ I EI+ +G L KL+H E V + LF +WG G TAQ Y +G R+L+D++N+ S
Sbjct: 308 EKIMEILESGHLRKLDHI--SESVPILELFSNIWGAGTKTAQMWYHQGFRSLEDIRNQAS 365
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 387
LT Q +GLK++ D R+PR E ++E+ ++ A + + P + + GSYRRGK +CGD+
Sbjct: 366 LTDQQAIGLKHYSDFLERMPREEAAEIEQTVRVAAQALSPGLWCVACGSYRRGKLTCGDV 425
Query: 388 DVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFST-HSEE------------------ 428
DV++ HPD +SH+G S+ + KL++ FL +DL+ H ++
Sbjct: 426 DVLVTHPDGRSHRGIFSRLLDKLRQQGFLTDDLLSQEDHCQQQKYLGVCQLPGPGRRHRR 485
Query: 429 ----VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRAR 484
V P +A L+ +TG+ NR +R LA++K L + L A +
Sbjct: 486 LDIIVVPYSQFACALLYFTGSAHFNRSMRALAKTKSMSLSEHALCTAVVRDTQGSKLGPG 545
Query: 485 TSLKFDTEKEVFDFLGFPWLEPHERN 510
L TEK+VF LG P+ EP ER+
Sbjct: 546 HVLPTPTEKDVFWLLGLPYREPAERD 571
>gi|260817611|ref|XP_002603679.1| hypothetical protein BRAFLDRAFT_235602 [Branchiostoma floridae]
gi|229289001|gb|EEN59690.1| hypothetical protein BRAFLDRAFT_235602 [Branchiostoma floridae]
Length = 510
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 153/533 (28%), Positives = 250/533 (46%), Gaps = 68/533 (12%)
Query: 22 MRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEAL--LQQVSKQHLA 79
+R F++ G+ R+ I+++++ + G + ++S +H++ D L ++ K
Sbjct: 1 VRAFILPAGLGKARMDIFKRQIPRFGGDLHGQISSNTSHIVVDDNMEYDRLCRILKVEKP 60
Query: 80 RFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSH 139
SV+ W+ D + + D Y IK V + + + + SD +S
Sbjct: 61 PVHASVVHANWVSDCIESRTLLGIDEYTIK-----------VPASMDDSWTSHSDWPASC 109
Query: 140 RKK--IKSSTEDVEHFQAESKGDV--------ETNALSEAPNSPMSSESLTNTLSTASAS 189
I + + H K + S+ P SP L N +
Sbjct: 110 LSVPLIGLNFQKFYHICDNQKFNAWLLRRHNQHEMGPSDWPTSPGYMIILNNDRGKWVCA 169
Query: 190 PDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFK 249
+S + + NK+IT+ F L Y+ + R+ SY KAI ++++ P
Sbjct: 170 EPSTSKGV----------NYNKHITDKFQLLAKAYKNTSDQWRALSYTKAIAILQRHPKP 219
Query: 250 IES---------ADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEV 300
I S ++ LPG+G+ + D I E+V +G L KL+H + + ++LF +V
Sbjct: 220 ITSWEVRHCCTFLEEAHSLPGVGQRLADKIWEVVESGHLRKLDHLGPEHEA--LNLFNDV 277
Query: 301 WGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQK 360
WG G TAQ+ ++G RTLDDL+ + LT Q++GLK++DD R+PR E ++ER +++
Sbjct: 278 WGAGAKTAQQWLQQGLRTLDDLRTKAKLTRQQQIGLKHYDDFLDRMPREEAAEIERTVRE 337
Query: 361 AGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDL 420
E + P+++ + GSYRRGK +CGD+DV+I HPD KSHKG K + LKE FL +DL
Sbjct: 338 MAESINPDLMAMACGSYRRGKLNCGDVDVLITHPDGKSHKGIFQKVLNGLKETGFLTDDL 397
Query: 421 IFSTHSEE-----------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAE 457
+ + E V P +A L+ +TG+ NR +R LA
Sbjct: 398 VTQEDNGEQKKYLGVCRLPGEGRKHRRLDIIVIPYSEFACALMYFTGSAHFNRSMRALAI 457
Query: 458 SKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
KG L + L GK+ + T L TE++VF LG + PHER+
Sbjct: 458 KKGMSLSEHSLNTGVI-RKGKEKIFGGTPLPCQTEEDVFRHLGLDYRPPHERD 509
>gi|311705747|gb|ADQ01139.1| DNA polymerase lambda [Saimiri sciureus]
Length = 575
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 161/551 (29%), Positives = 262/551 (47%), Gaps = 76/551 (13%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ +++VQ G + + VTH++ MD E L+ +
Sbjct: 41 LSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQAPGVTHIVVDDGMDYERALRLLGL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDG 135
L + +++ WL SL L E+ D+ + I R L Q Q + ++
Sbjct: 101 PQLPQ-GAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPCRYLDQPQ---PSKTEP 149
Query: 136 ESSHRKKIKSSTEDVEHFQAESKGDVETNALS------EAPNS---PMSSESLTNTLSTA 186
+SS I S T + A T LS EAPN+ P+S + ++ T
Sbjct: 150 DSS----IPSGTHEALLQTALFPPPSPTRPLSPPQKAKEAPNTQAQPISDDETSDGEETQ 205
Query: 187 SASPDF----SSHHIT---------------DPSLLYNPP-----DLNKNITEIFGKLIN 222
++ D S H+ T D + +P + N +ITE L
Sbjct: 206 VSAADLEALISGHYPTSIEGDCEPRLAPEVLDKWVCAHPSSQKVTNHNLHITEKLEVLAK 265
Query: 223 IYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKL 282
Y G+ R+ Y KAI ++ + S + +PGIGK M + + EI+ +G L KL
Sbjct: 266 AYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKVMEILESGHLRKL 325
Query: 283 EHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDI 342
+H E V + LF +WG G TAQ Y++G R+L++++++ SLT Q +GLK+++D
Sbjct: 326 DHI--SESVPVLELFSNIWGAGSKTAQMWYQQGFRSLEEIRSQASLTTQQAIGLKHYNDF 383
Query: 343 KTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGF 402
R+PR E ++E+ +QKA + P ++ + GSYRRGK +CGD+DV+I HPD +SH+G
Sbjct: 384 LERMPREEAAEIEQTVQKAAQAFNPRLLCVACGSYRRGKVTCGDVDVLITHPDGRSHQGI 443
Query: 403 LSKYVKKLKEMKFLREDLIFSTHSEE-----------------------VYPRDIYAFGL 439
S+ + L++ FL +DL+ + + V P +A L
Sbjct: 444 FSRLLDSLRQQGFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACAL 503
Query: 440 IAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFL 499
+ +TG+ NR +R LA++KG L + L A + V L TEK+VF L
Sbjct: 504 LYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNPQGCKVGPGRVLPTPTEKDVFRLL 563
Query: 500 GFPWLEPHERN 510
G P+ EP ER+
Sbjct: 564 GLPYREPAERD 574
>gi|403259667|ref|XP_003922326.1| PREDICTED: DNA polymerase lambda isoform 1 [Saimiri boliviensis
boliviensis]
gi|403259669|ref|XP_003922327.1| PREDICTED: DNA polymerase lambda isoform 2 [Saimiri boliviensis
boliviensis]
gi|403259671|ref|XP_003922328.1| PREDICTED: DNA polymerase lambda isoform 3 [Saimiri boliviensis
boliviensis]
Length = 575
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 161/551 (29%), Positives = 262/551 (47%), Gaps = 76/551 (13%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ +++VQ G + + VTH++ MD E L+ +
Sbjct: 41 LSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQAPGVTHIVVDDGMDYERALRLLGL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDG 135
L + +++ WL SL L E+ D+ + I R L Q Q + ++
Sbjct: 101 PQLPQ-GAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPCRYLDQPQ---PSKTEP 149
Query: 136 ESSHRKKIKSSTEDVEHFQAESKGDVETNALS------EAPNS---PMSSESLTNTLSTA 186
+SS I S T + A T LS EAPN+ P+S + ++ T
Sbjct: 150 DSS----IPSGTHEALLQTALFPPPSPTRPLSPPQKAKEAPNTQAQPISDDETSDGEETQ 205
Query: 187 SASPDF----SSHHIT---------------DPSLLYNPP-----DLNKNITEIFGKLIN 222
++ D S H+ T D + +P + N +ITE L
Sbjct: 206 VSAADLEALISGHYPTSIEGDCEPRLAPEVLDKWVCAHPSSQKVTNHNLHITEKLEVLAK 265
Query: 223 IYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKL 282
Y G+ R+ Y KAI ++ + S + +PGIGK M + + EI+ +G L KL
Sbjct: 266 AYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKVVEILESGHLRKL 325
Query: 283 EHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDI 342
+H E V + LF +WG G TAQ Y++G R+L++++++ SLT Q +GLK+++D
Sbjct: 326 DHI--SESVPVLELFSNIWGAGSKTAQMWYQQGFRSLEEIRSQASLTTQQAIGLKHYNDF 383
Query: 343 KTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGF 402
R+PR E ++E+ +QKA + P ++ + GSYRRGK +CGD+DV+I HPD +SH+G
Sbjct: 384 LERMPREEAAEIEQTVQKAAQAFNPRLLCVACGSYRRGKVTCGDVDVLITHPDGRSHQGI 443
Query: 403 LSKYVKKLKEMKFLREDLIFSTHSEE-----------------------VYPRDIYAFGL 439
S+ + L++ FL +DL+ + + V P +A L
Sbjct: 444 FSRLLDSLRQQGFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACAL 503
Query: 440 IAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFL 499
+ +TG+ NR +R LA++KG L + L A + V L TEK+VF L
Sbjct: 504 LYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNPQGCKVGPGRVLPTPTEKDVFRLL 563
Query: 500 GFPWLEPHERN 510
G P+ EP ER+
Sbjct: 564 GLPYREPAERD 574
>gi|413952551|gb|AFW85200.1| hypothetical protein ZEAMMB73_545880 [Zea mays]
Length = 272
Score = 214 bits (546), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 133/282 (47%), Positives = 171/282 (60%), Gaps = 40/282 (14%)
Query: 36 LQIWRQKLVQMGATVEEKLSKK----VTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWL 91
+Q+W+Q+LVQMG V EK +K V HVLAMD +ALL+++ L RF+GSV+ ++W+
Sbjct: 1 MQVWKQRLVQMGGRVVEKPTKGELAGVNHVLAMDAKALLRELDAAWLHRFRGSVVSFEWI 60
Query: 92 EDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSHRKKIKSSTEDVE 151
E+ L+ GE++ ++ ++ E E + GN + S K+ K S+E
Sbjct: 61 EECLKSGERLP--IHNFAINYEKEFKPKNAVC----TGNLVA---SRPSKRTKMSSEYPG 111
Query: 152 HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPD---------------FSSHH 196
Q S GD E + P P +S + S+A P+ SH
Sbjct: 112 DHQIISGGDREKELAAGGP--PGASAHVVEG-SSAGKQPNQYASSQSSSADSKDTIGSHG 168
Query: 197 I--------TDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPF 248
PS+ Y P DLNKNIT+IFG+LI+IYRALG+DRRSFSYYKAIPVIEKLPF
Sbjct: 169 TFGIEEASSGGPSI-YAPADLNKNITKIFGRLIDIYRALGDDRRSFSYYKAIPVIEKLPF 227
Query: 249 KIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEK 290
KIESADQVKGLP IGKS++DHI EIVTTGKLSKLEHFE DEK
Sbjct: 228 KIESADQVKGLPTIGKSLKDHINEIVTTGKLSKLEHFENDEK 269
>gi|293334963|ref|NP_001169410.1| uncharacterized protein LOC100383279 [Zea mays]
gi|224029181|gb|ACN33666.1| unknown [Zea mays]
Length = 272
Score = 214 bits (545), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 133/282 (47%), Positives = 171/282 (60%), Gaps = 40/282 (14%)
Query: 36 LQIWRQKLVQMGATVEEKLSKK----VTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWL 91
+Q+W+Q+LVQMG V EK +K V HVLAMD +ALL+++ L RF+GSV+ ++W+
Sbjct: 1 MQVWKQRLVQMGGRVVEKPTKGEPAGVNHVLAMDAKALLRELDAAWLHRFRGSVVSFEWI 60
Query: 92 EDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSHRKKIKSSTEDVE 151
E+ L+ GE++ ++ ++ E E + GN + S K+ K S+E
Sbjct: 61 EECLKSGERLP--IHNFAINYEKEFKPKNAVC----TGNLVA---SRPSKRTKMSSEYPG 111
Query: 152 HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPD---------------FSSHH 196
Q S GD E + P P +S + S+A P+ SH
Sbjct: 112 DHQIISGGDREKELAAGGP--PGASAHVVEG-SSAGKQPNQYASSQSSSADSKDTIGSHG 168
Query: 197 I--------TDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPF 248
PS+ Y P DLNKNIT+IFG+LI+IYRALG+DRRSFSYYKAIPVIEKLPF
Sbjct: 169 TFGIEEASSGGPSI-YAPADLNKNITKIFGRLIDIYRALGDDRRSFSYYKAIPVIEKLPF 227
Query: 249 KIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEK 290
KIESADQVKGLP IGKS++DHI EIVTTGKLSKLEHFE DEK
Sbjct: 228 KIESADQVKGLPTIGKSLKDHINEIVTTGKLSKLEHFENDEK 269
>gi|431838887|gb|ELK00816.1| DNA polymerase lambda [Pteropus alecto]
Length = 575
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 155/547 (28%), Positives = 256/547 (46%), Gaps = 68/547 (12%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ +++VQ G + VTH++ +MD E L+ +
Sbjct: 41 LSSLRAHVVPTGIGRARAELFEKQIVQYGGQICPAQDSGVTHIVVDESMDCERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDG 135
L +++ WL SL L E+ D + I +R L Q Q + +D
Sbjct: 101 PQLPP-GAQLVKSAWL--SLCLQERRLVDTAGFSI-----FIPNRYLDQPQ---LSKADQ 149
Query: 136 ES-----SHRKKIKSS----------------TEDVEHFQAESKGDVETNALSEAPNSPM 174
+S +H +K++ E+ QA+ D ET+ E S
Sbjct: 150 DSFPPPGTHEGLLKTALSPPPPPTRPVSPPQRAEEASSTQAQPSSDDETSDGEETQVSAA 209
Query: 175 SSESLTNTL--------STASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRA 226
E+L + S +P+ + + N +ITE L Y
Sbjct: 210 DLEALISGCYPTPLEGDGEPSPAPEGLEKWVCAQPSTQKATNHNPHITEKLEVLAKAYSV 269
Query: 227 LGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFE 286
G+ R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H
Sbjct: 270 QGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIVEILESGHLRKLDHI- 328
Query: 287 KDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRI 346
+ V + LF +WG G TAQ Y +G R+L+D++N+ SLT Q +GLK++DD + R+
Sbjct: 329 -SDSVPVLELFSNIWGAGTKTAQMWYHQGFRSLEDIRNQASLTAQQAIGLKHYDDFRERM 387
Query: 347 PRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY 406
PR E ++E+ ++++ + P ++ + GSYRRG+A+CGD+DV+I HPD +SH+G S+
Sbjct: 388 PREEATEIEQTVRESAQAFNPGLLCVACGSYRRGRATCGDVDVLITHPDGRSHQGIFSRL 447
Query: 407 VKKLKEMKFLREDLIFSTHSEE-----------------------VYPRDIYAFGLIAWT 443
+ L++ FL +DL+ + + V P +A L+ +T
Sbjct: 448 LDSLRQRGFLTDDLVSQEENGQQQKYLGVCQLPGPGRRHRRLDIIVVPYSEFACALLYFT 507
Query: 444 GNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPW 503
G+ NR +R LA++KG L + L A V + L TEK+VF LG P+
Sbjct: 508 GSAHFNRSMRALAKTKGMSLSEHALSTAVVRDTRGLRVGSGQVLPTPTEKDVFRLLGLPY 567
Query: 504 LEPHERN 510
EP ER+
Sbjct: 568 REPAERD 574
>gi|194041875|ref|XP_001926893.1| PREDICTED: DNA polymerase lambda [Sus scrofa]
Length = 575
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 159/544 (29%), Positives = 255/544 (46%), Gaps = 62/544 (11%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ +++VQ G + + VTH++ MD E L+ +
Sbjct: 41 LSSVRAHVVPTGIGRARAELFEKQIVQHGGQLCPAQAPGVTHIVVDEGMDCERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQ----GNGNT 131
+++ WL SL L E+ D + I +R L Q Q GN ++
Sbjct: 101 P-RLPPGAQLVKSAWL--SLCLQERRLVDTAGFSI-----FIPERYLDQAQLSKAGNDSS 152
Query: 132 SSDG--ESSHRKKIK---------SSTEDVEHF---QAESKGDVETNALSEAPNSPMSSE 177
+S G E+ R + S +E E F QA+ D +T+ E S E
Sbjct: 153 TSPGARETPLRTALSPPSPPTRPVSPSERTEEFASIQAQPGSDGDTSDGEETQVSAADLE 212
Query: 178 SLTNTL--------STASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGE 229
+L + S +P + + N +ITE L Y G+
Sbjct: 213 ALISGRYPTPLEEDGEPSPAPKGLDKWVCAQPSSQKATNHNPHITEKLEVLAKAYSVQGD 272
Query: 230 DRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDE 289
R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H E
Sbjct: 273 KWRALGYAKAINALKSFHKPVTSYQEACAIPGIGKRMAEKILEILESGHLRKLDHI--SE 330
Query: 290 KVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRH 349
V + LF +WG G TAQ Y +G R+L+D++N+ SLT Q +GLK++ D R+PR
Sbjct: 331 SVPVLQLFSNIWGAGTKTAQLWYHQGFRSLEDIRNQASLTTQQAIGLKHYHDFLDRMPRE 390
Query: 350 EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKK 409
E ++E+ +++A + P ++ + GSYRRG+A+CGD+DV++ HPD +SH+G S+ +
Sbjct: 391 EASEIEQTVREAAQAFNPGLLCVACGSYRRGRATCGDVDVLLTHPDGRSHQGIFSRLLDS 450
Query: 410 LKEMKFLREDLIFS-THSEE----------------------VYPRDIYAFGLIAWTGND 446
L++ FL +DL+ H ++ V P +A L+ +TG+
Sbjct: 451 LRQRGFLTDDLVSQEQHGQQQKYLGVCQLPGPGRRHRRLDIIVVPYSEFACALLYFTGSA 510
Query: 447 VLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEP 506
NR +R LA++KG L + L A V L TEK+VF LG P+ EP
Sbjct: 511 HFNRSMRALAKTKGMSLSEHALSTAVVRDAHGLKVGLGRVLPTPTEKDVFRLLGLPYREP 570
Query: 507 HERN 510
ER+
Sbjct: 571 AERD 574
>gi|354496552|ref|XP_003510390.1| PREDICTED: DNA polymerase lambda isoform 1 [Cricetulus griseus]
gi|344253425|gb|EGW09529.1| DNA polymerase lambda [Cricetulus griseus]
Length = 568
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 156/541 (28%), Positives = 249/541 (46%), Gaps = 62/541 (11%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLA---MDLEALLQQVSK 75
+ +R ++ G+ R +++ ++++ G + + VTH++ MD E L+ +
Sbjct: 40 LSSLRAHIIPTGIGRARAELFEKQIIHHGGQICSAQAPGVTHIVVDENMDCERALRLLRL 99
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEK-------VSEDLYRIKLDPEGENIADRVLSQIQGN 128
+++ WL SL L E+ S + + LD N AD +
Sbjct: 100 P-QLPPSAQLVKSTWL--SLCLQERRLIDTAGFSVCIPKSSLDQPQPNKADESTQEAVSR 156
Query: 129 GNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASA 188
S + + E A+ D ET+ E P +SS L +S
Sbjct: 157 TTLSPSPPHTRAASPPAKAEKAPRIPAQLGSDDETSD-EEGPQ--VSSADLEALISGHYP 213
Query: 189 SPDFSSHHITDPS-------LLYNPP-----DLNKNITEIFGKLINIYRALGEDRRSFSY 236
+P DP + P + N++ITE L Y G+ R+ Y
Sbjct: 214 AP-LEEDGGPDPVPEALEKWVCAQPSSQKATNYNQHITEKLEVLAKAYSVQGDKWRALGY 272
Query: 237 YKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISL 296
KAI ++ + S + G+PGIGK M + I EI+ +G L KL+H + V + L
Sbjct: 273 AKAINALKSFHKPVSSYQEACGIPGIGKRMAEKIVEILESGHLRKLDHI--SDSVPVLEL 330
Query: 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMER 356
F +WG G TAQ Y +G R L+D+++ DSLT Q +GLK++DD R+PR E +E+
Sbjct: 331 FSNIWGAGTKTAQMWYHQGFRNLEDIRSLDSLTTQQAIGLKHYDDFLERMPREEAADIEK 390
Query: 357 LLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFL 416
++ + + P ++ + GSYRRGK +CGD+DV+I HPD +SH+G S+ + L++ FL
Sbjct: 391 TVRISAQAFNPGLLCVACGSYRRGKMTCGDVDVLITHPDGRSHQGIFSRLLDSLRQQGFL 450
Query: 417 REDLIFSTHSEE-------------------------VYPRDIYAFGLIAWTGNDVLNRR 451
+DL+ +H E V P +A L+ +TG+ NR
Sbjct: 451 TDDLV--SHEENGQQQKYLGVCRLPGPKQRHRRLDIIVVPYSEFACALLYFTGSAHFNRS 508
Query: 452 LRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTS--LKFDTEKEVFDFLGFPWLEPHER 509
+R LA++KG L + L A + QGV+ L TEK+VF LG P+ EP ER
Sbjct: 509 MRALAKTKGMSLSEHALSAAVVRN--SQGVKVGPGRVLPTPTEKDVFRLLGLPYREPAER 566
Query: 510 N 510
+
Sbjct: 567 D 567
>gi|410976013|ref|XP_003994420.1| PREDICTED: DNA polymerase lambda [Felis catus]
Length = 609
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 156/562 (27%), Positives = 253/562 (45%), Gaps = 98/562 (17%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ ++++Q G + + VTH++ MD E L+ +
Sbjct: 40 LSSLRAHVVPSGIGRARAELFEKQIIQHGGQICTAQAPGVTHIVVDEGMDCERALRLLRL 99
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEK----------------------------------V 101
L + +++ WL SL L E+
Sbjct: 100 PRLPQ-GAQLVKSTWL--SLCLQERRLVDTAGFSIYIPNRYPDQPHVSKADQDFSAPPGA 156
Query: 102 SEDLYRIKLDPEGE-----NIADRVLSQIQGNGNTSSDGESSHRKKIKSSTEDVE----- 151
E L R L P + R + SD E+S ++ + S D+E
Sbjct: 157 HEALLRTALSPPSPPTRPVSPPQRAEEALSTQAQPGSDDETSDGEENQVSAADLEALISG 216
Query: 152 HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNK 211
H+ +GD E S AP E L + +S ++H N
Sbjct: 217 HYPTPLEGDDEP---SPAP------EGLDKWVCAQPSSQKTTNH--------------NP 253
Query: 212 NITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQ 271
+ITE L Y G+ R+ Y KAI ++ + S + +PGIGK M + I
Sbjct: 254 HITEKLEVLAKAYNVQGDKWRALGYAKAINALKSFHKPVTSYQEAFSIPGIGKRMAEKIV 313
Query: 272 EIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHS 331
EI+ +G L KL+H E V + LF +WG G TAQ Y++G RTL+D++++ SLT
Sbjct: 314 EILESGHLRKLDHI--SESVPVLELFSNIWGAGAKTAQMWYQQGFRTLEDIRSQASLTTQ 371
Query: 332 QRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVI 391
Q +GLK++DD RIPR E ++E+ ++++ + P ++ + GSYRRGKA+CGD+DV++
Sbjct: 372 QTIGLKHYDDFLERIPREEAAEIEQTVRESAQAFTPGLLCVACGSYRRGKATCGDVDVLL 431
Query: 392 MHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE----------------------- 428
HPD +SH+G ++ + L++ FL +DL+ + +
Sbjct: 432 THPDGRSHQGVFNRLLDSLRQQGFLTDDLVSQEENGQQQKYLGVCQLPGPGRRHRRLDII 491
Query: 429 VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLK 488
V P +A L+ +TG+ NR +R LA++K L + L A + V L
Sbjct: 492 VVPYSEFACALLYFTGSAHFNRSMRALAKTKSMSLSEHALSTAVVRDSRGRKVGPGRVLP 551
Query: 489 FDTEKEVFDFLGFPWLEPHERN 510
TEK+VF LG P+ EP ER+
Sbjct: 552 TPTEKDVFRLLGLPYREPAERD 573
>gi|390473089|ref|XP_003734558.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase lambda [Callithrix
jacchus]
Length = 575
Score = 211 bits (538), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 156/544 (28%), Positives = 254/544 (46%), Gaps = 62/544 (11%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ +++VQ G + + VTH++ MD E L+ +
Sbjct: 41 LSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQAPGVTHIVVDDGMDYERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNT--SS 133
+++ WL SL L E+ D+ + I R L Q Q + SS
Sbjct: 101 P-QLPQGAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPSRYLDQPQPSKTEQDSS 152
Query: 134 DGESSHRKKIKSS----------------TEDVEHFQAESKGDVETNALSEAPNSPMSSE 177
+H ++++ ++ + QA+ D ET+ E S E
Sbjct: 153 IPSGAHEALLQTALSPPPSPTRPVSPPQKAKEAPNTQAQPISDDETSDGEETQVSAADLE 212
Query: 178 SLTNTLSTASASPDFS---SHHITDPSLLYNPP-----DLNKNITEIFGKLINIYRALGE 229
+L + S D + + D + P + N +ITE L Y G+
Sbjct: 213 ALISGHYPTSIEGDCEPRLAPEVLDKWVCAQPSSQKVTNHNLHITEKLEVLAKAYSVQGD 272
Query: 230 DRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDE 289
R+ Y KAI ++ + S + +PGIGK M + I EI+ + L LEH +
Sbjct: 273 KWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIVEILESVHLRNLEHI--SD 330
Query: 290 KVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRH 349
V + LF +WG G TAQ Y++G R+L++++++ SLT Q +GLK++DD R+PR
Sbjct: 331 SVPVLELFSNIWGAGSKTAQMWYQQGFRSLEEIRSQASLTTQQAIGLKHYDDFLERMPRE 390
Query: 350 EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKK 409
E ++E+ +QKA + P ++ + GSYRRGKA+CGD+DV+I HPD +SHKG S+ +
Sbjct: 391 EATEIEQTVQKAAQAFNPRLLCVACGSYRRGKATCGDVDVLITHPDGRSHKGIFSRLLDS 450
Query: 410 LKEMKFLREDLIFSTHSEE-----------------------VYPRDIYAFGLIAWTGND 446
L++ FL +DL+ + + V P +A L+ +TG+
Sbjct: 451 LRQQGFLTDDLVSQEENGQQQKYLGVCQLPGPGRRHRRLDIIVVPYSEFACALLYFTGSA 510
Query: 447 VLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEP 506
NR +R LA++KG L + L A + V L TEK+VF LG P+ EP
Sbjct: 511 HFNRSMRALAKTKGMSLSEHALTTAVVRNPQGCKVGPGQVLPTPTEKDVFRLLGLPYREP 570
Query: 507 HERN 510
ER+
Sbjct: 571 AERD 574
>gi|311705749|gb|ADQ01140.1| DNA polymerase lambda [Miopithecus talapoin]
Length = 574
Score = 211 bits (537), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 157/543 (28%), Positives = 256/543 (47%), Gaps = 61/543 (11%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ +++VQ G + VTH++ MD E L+ +
Sbjct: 41 LSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPVQGPGVTHIVVDEGMDYERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNG--NTSS 133
L +++ WL SL L E+ D+ R + I R L Q Q + +S
Sbjct: 101 PRLPP-GAQLVKSAWL--SLCLQERRLVDVARFSI-----FIPSRYLDQSQPSKAEQDAS 152
Query: 134 DGESSHRKKIKS---------------STEDVEHFQAESKGDVETNALSEAPNSPMSSES 178
+H +++ T++ + QA+ D E + E S E+
Sbjct: 153 LPPGTHEALLQTVLPPPPPTRPVSPPQKTKEAPNTQAQPISDDEASDGEETQVSAADLEA 212
Query: 179 LTNTLSTASASPDFS---SHHITDPSLLYNPP-----DLNKNITEIFGKLINIYRALGED 230
L + AS D + + D + P + N +ITE L Y G+
Sbjct: 213 LISGYYPASLEGDCEPSPAPVVLDKWVCAQPSSQKATNHNLHITEKLEVLAKAYSVQGDK 272
Query: 231 RRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEK 290
R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H E
Sbjct: 273 WRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SES 330
Query: 291 VRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHE 350
V + LF +WG G TAQ Y++G R+L+D++++ SLT Q +GLK+++D R+PR E
Sbjct: 331 VPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYNDFLERMPREE 390
Query: 351 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 410
++E+ +QKA + ++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L
Sbjct: 391 ATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSL 450
Query: 411 KEMKFLREDLIFSTHSEE-----------------------VYPRDIYAFGLIAWTGNDV 447
++ FL +DL+ + + V P +A L+ +TG+
Sbjct: 451 RQQGFLTDDLVSQEENGQQQKYLGVCRLPGPGWRHRRLDIIVVPYSEFACALLYFTGSAH 510
Query: 448 LNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPH 507
NR +R LA++KG L + L A + + L TEK+VF LG P+ EP
Sbjct: 511 FNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKMGPGRVLPTPTEKDVFRLLGLPYREPA 570
Query: 508 ERN 510
ER+
Sbjct: 571 ERD 573
>gi|311705725|gb|ADQ01128.1| DNA polymerase lambda [Hylobates agilis]
Length = 574
Score = 211 bits (536), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 129/406 (31%), Positives = 203/406 (50%), Gaps = 53/406 (13%)
Query: 133 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 187
SD E+S ++ + S D+E H+ +GD E P + ++ + A
Sbjct: 193 SDDEASDGEETQVSAADLEALISGHYPTSLEGDCE----------PSPASAVLDKWVCAQ 242
Query: 188 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 247
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 243 PSSQKATNH-------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 289
Query: 248 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307
+ S + +PGIGK M + I EI+ +G L KL+H + V + LF +WG G T
Sbjct: 290 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SDSVPVLELFSNIWGAGTKT 347
Query: 308 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
AQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA + P
Sbjct: 348 AQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNP 407
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 427
++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ +
Sbjct: 408 GLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQQGFLTDDLVSQEENG 467
Query: 428 E-----------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLD 464
+ V P +A L+ +TG+ NR +R LA++KG L
Sbjct: 468 QQQKYLGVCRLPGPGWRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLS 527
Query: 465 DTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+ L A + V L TEK+VF LG P+ EP ER+
Sbjct: 528 EHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 573
>gi|348578599|ref|XP_003475070.1| PREDICTED: DNA polymerase lambda-like isoform 1 [Cavia porcellus]
Length = 574
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 157/559 (28%), Positives = 253/559 (45%), Gaps = 93/559 (16%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ ++++Q G + + VTH++ AMD E L+ +
Sbjct: 41 LSSLRAHVVPTGIGRARAELFEKQIIQHGGQICPAQAPGVTHIVVDEAMDCERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQ--------- 126
+++ WL SL L E+ D + I R L+Q Q
Sbjct: 101 P-QLPPGAQLVKSTWL--SLCLQERRLVDTAGFCI-----FIPSRYLNQSQSSQTDQDSS 152
Query: 127 ---------------------GNGNTSSDGESSHRKKIKSSTEDVEHFQAE----SKGDV 161
G+ + E + I+ S++D E +E S D+
Sbjct: 153 APSASPGTCEVLLKTAVCPPSGDASLPQKAEEASSTHIQPSSDD-ETSDSEGPQVSAADL 211
Query: 162 ETNALSEAPNSP-------MSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNIT 214
E P +P ++E+L + S+S ++H N +IT
Sbjct: 212 EALISGHYPATPEENSGPGPATETLDKWVCAQSSSQKVTNH--------------NLHIT 257
Query: 215 EIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIV 274
E L N Y G+ R+ Y KAI ++ + S + +PG+GK M + IQEI+
Sbjct: 258 EKLEVLANAYNIQGDKWRALGYAKAINALKSFHKPVSSYQEACSIPGVGKRMAEKIQEIL 317
Query: 275 TTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRL 334
+G L KL+H E V + LF +WG G TAQ Y +G R+L+D++N SLT Q +
Sbjct: 318 ESGHLRKLDHI--SESVPVLQLFSSIWGAGTKTAQMWYHQGFRSLEDIRNLASLTAQQAI 375
Query: 335 GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
GLK++ D R+PR E ++E+ ++ A P ++ + GSYRRGK +CGD+DV+I HP
Sbjct: 376 GLKHYSDFLERMPRDEAAEIEQTVRAAAYTCNPGLLCVACGSYRRGKPTCGDVDVLITHP 435
Query: 395 DRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE-----------------------VYP 431
D +SH+G S+ + L++ FL +DL+ + + V P
Sbjct: 436 DGRSHRGVFSRLLDGLRQQGFLTDDLVSQEDNGQQQKYLGVCRLPGPRRRHRRLDIIVVP 495
Query: 432 RDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDT 491
+A L+ +TG+ NR +R LA++KG L + L G + V L T
Sbjct: 496 YGEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTVIRNPRGLK-VGPGQVLPTPT 554
Query: 492 EKEVFDFLGFPWLEPHERN 510
EK+VF LG P+ EP ER+
Sbjct: 555 EKDVFRLLGLPYREPAERD 573
>gi|311705735|gb|ADQ01133.1| DNA polymerase lambda [Colobus guereza]
Length = 575
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 130/406 (32%), Positives = 203/406 (50%), Gaps = 53/406 (13%)
Query: 133 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 187
SD E+S ++ + ST D+E H+ +GD E P + + + A
Sbjct: 194 SDDEASDGEETQVSTADLEALISGHYPTSLEGDCE----------PSPAPVVLDKWVCAQ 243
Query: 188 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 247
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 244 PSSQKATNH-------------NLHITEKLDVLAKAYSVQGDKWRALGYAKAINALKSFH 290
Query: 248 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307
+ S + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G T
Sbjct: 291 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKT 348
Query: 308 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
AQ Y++G R+L+D++++ SLT Q +GLK+++D R+PR E ++E+ +QKA +
Sbjct: 349 AQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYNDFLERMPREEATEIEQTVQKAAQAFNS 408
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 427
++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ +
Sbjct: 409 GLLCVACGSYRRGKATCGDVDVLITHPDGRSHQGIFSRLLDSLRQQGFLTDDLVSQEENG 468
Query: 428 E-----------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLD 464
+ V P +A L+ +TG+ NR +R LA++KG L
Sbjct: 469 QQQKYLGVCRLPGPGWRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLS 528
Query: 465 DTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+ L A + V L TEK+VF LG P+ EP ER+
Sbjct: 529 EHALSTAVVRNTHGCKVAPGRVLPTPTEKDVFRLLGLPYREPAERD 574
>gi|355712671|gb|AES04427.1| polymerase , lambda [Mustela putorius furo]
Length = 575
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 150/544 (27%), Positives = 251/544 (46%), Gaps = 61/544 (11%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ +++ Q G + + VTH++ MD E +L+ +
Sbjct: 41 LSSLRAHVVPSGIGRARAELFEKQITQYGGQICAAQAPGVTHIVVDEGMDCERVLRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDG 135
L + +++ WL L+ V + I + P + LS+ + +
Sbjct: 101 PQLPQ-GAQLVKSTWLSLCLQEKRLVDTAGFNIYI-PNSRYLDQPQLSKADQDSSVPPGA 158
Query: 136 ESSHRKKIKSS-------------TEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNT 182
+ + + S TE+ QA+ D ET+ E S E+L +
Sbjct: 159 QEAVLRTALSPPRPPTRPVSPPWRTEEAPSTQAQPDCDDETSDGEETQVSAADLEALISG 218
Query: 183 LSTASASPD-------------FSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGE 229
+ S D + + ++ YNP +ITE L Y G+
Sbjct: 219 HCSPSLEGDAEPIPAPKGLDKWVCAQPSSQKAVNYNP-----HITEKLEVLAKAYSVQGD 273
Query: 230 DRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDE 289
R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H E
Sbjct: 274 KWRALGYAKAINALKSFHKPVTSYQEAFSIPGIGKRMAEKIVEILESGHLRKLDHI--SE 331
Query: 290 KVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRH 349
V + LF +WG G TAQ Y++G RTL+D++++ SLT Q +GLK+++D RIPR
Sbjct: 332 SVPVLELFSNIWGAGTKTAQMWYQQGFRTLEDIRDQASLTSQQAIGLKHYEDFLERIPRE 391
Query: 350 EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKK 409
E ++E+ +++A + P ++ + GSYRRGKASCGD+DV++ HPD +SH+G + +
Sbjct: 392 EATEIEQTVREAAQAFSPGLLCVACGSYRRGKASCGDVDVLLTHPDGRSHQGIFNPLLDS 451
Query: 410 LKEMKFLREDLIFSTHSEE-----------------------VYPRDIYAFGLIAWTGND 446
L+ FL +DL+ + + + P +A L+ +TG+
Sbjct: 452 LRRQGFLTDDLVSQEENGQQQKYLGVCQLPGPGRRHRRLDIIIVPYSEFACALLYFTGSA 511
Query: 447 VLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEP 506
NR +R LA++KG L + L + V L TEK+VF LG P+ EP
Sbjct: 512 HFNRSMRALAKTKGMSLSEHALSTSVVRDTHGLKVGPGRVLPTPTEKDVFRLLGLPYREP 571
Query: 507 HERN 510
ER+
Sbjct: 572 AERD 575
>gi|403259675|ref|XP_003922330.1| PREDICTED: DNA polymerase lambda isoform 5 [Saimiri boliviensis
boliviensis]
Length = 487
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 127/406 (31%), Positives = 202/406 (49%), Gaps = 53/406 (13%)
Query: 133 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 187
SD E+S ++ + S D+E H+ +GD E ++ E L +
Sbjct: 106 SDDETSDGEETQVSAADLEALISGHYPTSIEGDCEPR---------LAPEVLDKWVCAHP 156
Query: 188 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 247
+S ++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 157 SSQKVTNH--------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 202
Query: 248 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307
+ S + +PGIGK M + + EI+ +G L KL+H E V + LF +WG G T
Sbjct: 203 KPVTSYQEACSIPGIGKRMAEKVVEILESGHLRKLDHI--SESVPVLELFSNIWGAGSKT 260
Query: 308 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
AQ Y++G R+L++++++ SLT Q +GLK+++D R+PR E ++E+ +QKA + P
Sbjct: 261 AQMWYQQGFRSLEEIRSQASLTTQQAIGLKHYNDFLERMPREEAAEIEQTVQKAAQAFNP 320
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 427
++ + GSYRRGK +CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ +
Sbjct: 321 RLLCVACGSYRRGKVTCGDVDVLITHPDGRSHQGIFSRLLDSLRQQGFLTDDLVSQEENG 380
Query: 428 E-----------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLD 464
+ V P +A L+ +TG+ NR +R LA++KG L
Sbjct: 381 QQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLS 440
Query: 465 DTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+ L A + V L TEK+VF LG P+ EP ER+
Sbjct: 441 EHALSTAVVRNPQGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 486
>gi|397510308|ref|XP_003825540.1| PREDICTED: DNA polymerase lambda isoform 1 [Pan paniscus]
gi|397510310|ref|XP_003825541.1| PREDICTED: DNA polymerase lambda isoform 2 [Pan paniscus]
gi|397510312|ref|XP_003825542.1| PREDICTED: DNA polymerase lambda isoform 3 [Pan paniscus]
Length = 575
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 155/547 (28%), Positives = 256/547 (46%), Gaps = 68/547 (12%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ +++VQ G + VTH++ MD E L+ +
Sbjct: 41 LSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQGPGVTHIVVDEGMDYERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGN--GNTSS 133
+++ WL SL L E+ D+ + I R L Q + G +S
Sbjct: 101 P-QLPPGAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPSRYLDHPQPSKAGQDAS 152
Query: 134 DGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNS---PMSSESLTNTLSTASASP 190
+H ++++ + ++ EAPN+ P+S + ++ T ++
Sbjct: 153 IPPGTHEALLQTA---LSPPPPPTRPVSPPQKAKEAPNTQAQPISDDEASDGEETQVSAA 209
Query: 191 DF----SSHHITD----------PSLL----------YNPPDLNKNITEIFGKLINIYRA 226
D S H+ T P++L + N +ITE L Y
Sbjct: 210 DLEALISGHYPTSLEGDCEPSPAPAVLDKWVCAQPSSQKATNHNLHITEKLEVLAKAYSV 269
Query: 227 LGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFE 286
G+ R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H
Sbjct: 270 QGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI- 328
Query: 287 KDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRI 346
E V + LF +WG G TAQ Y++G R+L+D++++ SLT Q +GLK++ D R+
Sbjct: 329 -SESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAVGLKHYSDFLERM 387
Query: 347 PRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY 406
PR E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+
Sbjct: 388 PREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRL 447
Query: 407 VKKLKEMKFLREDLIFSTHSEE-----------------------VYPRDIYAFGLIAWT 443
+ L++ FL +DL+ + + V P +A L+ +T
Sbjct: 448 LDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFT 507
Query: 444 GNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPW 503
G+ NR +R LA++KG L + L A + V L TEK+VF LG P+
Sbjct: 508 GSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPY 567
Query: 504 LEPHERN 510
EP ER+
Sbjct: 568 REPAERD 574
>gi|344274825|ref|XP_003409215.1| PREDICTED: DNA polymerase lambda isoform 1 [Loxodonta africana]
Length = 575
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 155/567 (27%), Positives = 253/567 (44%), Gaps = 108/567 (19%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ ++++Q G + + VTH++ MD E L+ +
Sbjct: 41 LSSLRAHVVPTGIGRARAELFEKQIIQHGGQICPAQASGVTHIVVDEGMDCERALRLLKL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQ---GNGNTS 132
L +++ WL SL L E+ D + I +R L Q Q N ++S
Sbjct: 101 PQLPT-GAQLVKSAWL--SLCLQERRLVDTAGFSI-----FIPNRYLDQPQPSKANQDSS 152
Query: 133 -----------------------------------------SDGESSHRKKIKSSTEDVE 151
SD E+S ++ + S D+E
Sbjct: 153 TPPGPHEALLRTPLSPPPPPTRPVSPFQKAEEAPSIQTQPGSDDETSDGEETQVSAADLE 212
Query: 152 -----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNP 206
H+ +GD E P + + A S +++H
Sbjct: 213 ILISGHYPTPLEGDGE----------PSPTPKALDKWVCAQPSSQKATNH---------- 252
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSM 266
N +ITE L Y G+ R+ Y KAI ++ + S + +PG+GK M
Sbjct: 253 ---NLHITEKLEVLAKAYTVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGVGKRM 309
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED 326
+ + EI+ +G L KL+H E V + LF +WG G TAQ Y++G RTL+D++++
Sbjct: 310 AEKVVEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRTLEDIRSQA 367
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
SLT Q +GLKY+ D R+PR E ++++ +Q++ + + P ++ + GSYRRGKA+CGD
Sbjct: 368 SLTTQQAIGLKYYGDFLERMPREEAAEIQQTVQESAQALNPGLLCVACGSYRRGKATCGD 427
Query: 387 LDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE------------------ 428
+DV+I HPD +SH+G S + L++ FL +DL+ + +
Sbjct: 428 VDVLITHPDGRSHQGIFSHLLDSLRQRGFLTDDLVSQEQNGQQQKYLGVCQLPGPRRRHR 487
Query: 429 -----VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRA 483
V P +A L+ +TG+ NR +R LA++KG L + L A V
Sbjct: 488 RLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRDTQGLKVGP 547
Query: 484 RTSLKFDTEKEVFDFLGFPWLEPHERN 510
L TEK+VF LG P+ EP ER+
Sbjct: 548 GWVLPTPTEKDVFRLLGLPYREPAERD 574
>gi|432113053|gb|ELK35631.1| DNA polymerase lambda [Myotis davidii]
Length = 573
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 150/543 (27%), Positives = 252/543 (46%), Gaps = 60/543 (11%)
Query: 18 IFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVS 74
+ +R +V G+ R +++ +++VQ G + + VTH++ MD E L+ +
Sbjct: 40 CLSSLRAHVVPAGIGRARAELFEKQIVQHGGQIYSAQAPGVTHIVVDDGMDCERALRLLR 99
Query: 75 KQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSD 134
L +++ WL SL L E+ D + I +R L Q Q +
Sbjct: 100 LPRLPP-GAQLVKSAWL--SLCLQERRLVDTAGFSI-----FIPNRFLDQPQLSKADQDS 151
Query: 135 GESSHRKKIKSST----------------EDVEHFQAESKGDVETNALSEAPNSPMSSES 178
+ ++++ E+ + QA+ D +T+ E P S E+
Sbjct: 152 PPGACEALLRTTPSPPPTPPRPVSPPQRIEEAPNTQAQPGSDDDTSDGEETPVSTADLEA 211
Query: 179 LTNTL--------STASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGED 230
L + S +P+ + + N +ITE L Y G+
Sbjct: 212 LISGRYPIPPEGDGDPSPAPEGLKKWVCAQPSSQKATNHNTHITEKLEVLAKAYSVQGDK 271
Query: 231 RRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEK 290
R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H
Sbjct: 272 WRALGYDKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIVEILESGHLRKLDHI--SHS 329
Query: 291 VRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHE 350
V + LF +WG G TAQ Y++G R+L+D++N+ SLT Q +GLK++DD R+PR E
Sbjct: 330 VPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRNQASLTTQQAIGLKHYDDFLERMPREE 389
Query: 351 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 410
++E+ ++++ + P ++ + GSYRRGKA+CGD+DV++ HPD +SH+G S+ + L
Sbjct: 390 AAEIEQTVRESAQAFSPGLLCVACGSYRRGKATCGDVDVLLTHPDGRSHQGIFSRLLDSL 449
Query: 411 KEMKFLREDLIFSTHSEE-----------------------VYPRDIYAFGLIAWTGNDV 447
++ FL +DL+ + + + P +A L+ +TG+
Sbjct: 450 RQRGFLTDDLVSQEENGQQQKYLGVCQLPGPGRRHRRLDIIIVPYSEFACALLYFTGSAH 509
Query: 448 LNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPH 507
NR +R LA++KG L + L A V + L TEK+VF LG P+ EP
Sbjct: 510 FNRSMRALAKTKGMSLSEHALSAAVVRDTRGLKVGSGRVLPTPTEKDVFRLLGLPYREPA 569
Query: 508 ERN 510
ER+
Sbjct: 570 ERD 572
>gi|311705745|gb|ADQ01138.1| DNA polymerase lambda [Symphalangus syndactylus]
Length = 574
Score = 208 bits (530), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 129/406 (31%), Positives = 202/406 (49%), Gaps = 53/406 (13%)
Query: 133 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 187
SD E+S ++ + S D+E H+ +GD E P + ++ + A
Sbjct: 193 SDDEASDGEETQVSAADLEALISGHYPTSLEGDCE----------PSPASAVLDKWVCAQ 242
Query: 188 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 247
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 243 PSSQKATNH-------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 289
Query: 248 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307
+ S + +PGIGK M + I EI+ +G L KL+H + V + LF +WG G T
Sbjct: 290 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SDSVPVLELFSNIWGAGTKT 347
Query: 308 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
AQ Y++G R+L+D++++ SLT Q +GLK++ D RIPR E ++E+ +QKA +
Sbjct: 348 AQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERIPREEATEIEQTVQKAAQAFNS 407
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 427
++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ +
Sbjct: 408 GLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQQGFLTDDLVSQEENG 467
Query: 428 E-----------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLD 464
+ V P +A L+ +TG+ NR +R LA++KG L
Sbjct: 468 QQQKYLGVCRLPGPGWRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLS 527
Query: 465 DTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+ L A + V L TEK+VF LG P+ EP ER+
Sbjct: 528 EHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 573
>gi|311705729|gb|ADQ01130.1| DNA polymerase lambda [Pongo pygmaeus]
Length = 568
Score = 208 bits (530), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 153/537 (28%), Positives = 252/537 (46%), Gaps = 55/537 (10%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ ++++Q G + VTH++ MD E L+ +
Sbjct: 41 LSSLRAHVVRTGIGRARAELFEEQIIQHGGQLCPAQGPGVTHIVVDEGMDYERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNG--NTSS 133
+++ WL SL L E+ D+ + I R L Q Q + +S
Sbjct: 101 P-QLPPGAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPSRYLDQPQPSKAEQDAS 152
Query: 134 DGESSHRKKIKSS---------TEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLS 184
+H ++++ ++ + QA+ D E + E S E+L +
Sbjct: 153 IPPGTHEALLQTALSPPPPPQKAKEAPNTQAQPISDDEASDGEETQVSAADLEALISGHY 212
Query: 185 TASASPDF---SSHHITDPSLLYNPP-----DLNKNITEIFGKLINIYRALGEDRRSFSY 236
S D + + D + P + N +ITE L Y G+ R+ Y
Sbjct: 213 PTSLEGDCEPSPAPAVLDKWVCAQPSSQKATNHNLHITEKLEVLAKAYGVQGDKWRALGY 272
Query: 237 YKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISL 296
KAI ++ + S + +PGIGK M + I EI+ +G L KL+H E V + L
Sbjct: 273 AKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLEL 330
Query: 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMER 356
F +WG G TAQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+
Sbjct: 331 FSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQ 390
Query: 357 LLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFL 416
+QKA + ++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL
Sbjct: 391 TVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQQGFL 450
Query: 417 REDLIFSTHSEE-----------------------VYPRDIYAFGLIAWTGNDVLNRRLR 453
+DL+ + + V P +A L+ +TG+ NR +R
Sbjct: 451 TDDLVSQEENGQQQKYLGVCRLPGPGWRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMR 510
Query: 454 LLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
LA++KG L + L A + V L TEK+VF LG P+ EP ER+
Sbjct: 511 ALAKTKGMSLSEHALSTAVVRNTQGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 567
>gi|426365955|ref|XP_004050031.1| PREDICTED: DNA polymerase lambda isoform 1 [Gorilla gorilla
gorilla]
gi|426365957|ref|XP_004050032.1| PREDICTED: DNA polymerase lambda isoform 2 [Gorilla gorilla
gorilla]
gi|311705737|gb|ADQ01134.1| DNA polymerase lambda [Gorilla gorilla]
Length = 575
Score = 208 bits (530), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 155/547 (28%), Positives = 256/547 (46%), Gaps = 68/547 (12%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ +++VQ G + VTH++ MD E L+ +
Sbjct: 41 LSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQGPGVTHIVVDEGMDYERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNG--NTSS 133
+++ WL SL L E+ D+ + I R L Q Q + +S
Sbjct: 101 P-QLPPGAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPSRYLDQPQPSKAEQDAS 152
Query: 134 DGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNS---PMSSESLTNTLSTASASP 190
+H ++++ + ++ EAPN+ P+S + ++ T ++
Sbjct: 153 IPPGTHEALLQTA---LSPPPPPTRPVSPPQKAKEAPNTQAQPISDDEASDGEETQVSAA 209
Query: 191 DF----SSHHITD----------PSLL----------YNPPDLNKNITEIFGKLINIYRA 226
D S H+ T P++L + N +ITE L Y
Sbjct: 210 DLEALISGHYPTSLEGDCEPSPAPAVLDKWVCAQPSSQKATNHNLHITEKLEVLAKAYSV 269
Query: 227 LGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFE 286
G+ R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H
Sbjct: 270 QGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI- 328
Query: 287 KDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRI 346
E V + LF +WG G TAQ Y++G R+L+D+ ++ SLT Q +GLK++ D R+
Sbjct: 329 -SESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIHSQASLTTQQAIGLKHYSDFLERM 387
Query: 347 PRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY 406
PR E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+
Sbjct: 388 PREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRL 447
Query: 407 VKKLKEMKFLREDLIFSTHSEE-----------------------VYPRDIYAFGLIAWT 443
+ L++ FL +DL+ + + V P +A L+ +T
Sbjct: 448 LDSLRQQGFLTDDLVSQEENGQQQKYLGVCRLPGPGWRHRRLDIIVVPYSEFACALLYFT 507
Query: 444 GNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPW 503
G+ NR +R LA++KG L + L A + V + L TEK+VF LG P+
Sbjct: 508 GSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGSGRVLPTPTEKDVFRLLGLPY 567
Query: 504 LEPHERN 510
EP ER+
Sbjct: 568 REPAERD 574
>gi|426365961|ref|XP_004050034.1| PREDICTED: DNA polymerase lambda isoform 4 [Gorilla gorilla
gorilla]
Length = 487
Score = 208 bits (530), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 129/406 (31%), Positives = 202/406 (49%), Gaps = 53/406 (13%)
Query: 133 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 187
SD E+S ++ + S D+E H+ +GD E P + ++ + A
Sbjct: 106 SDDEASDGEETQVSAADLEALISGHYPTSLEGDCE----------PSPAPAVLDKWVCAQ 155
Query: 188 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 247
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 156 PSSQKATNH-------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 202
Query: 248 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307
+ S + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G T
Sbjct: 203 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKT 260
Query: 308 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
AQ Y++G R+L+D+ ++ SLT Q +GLK++ D R+PR E ++E+ +QKA +
Sbjct: 261 AQMWYQQGFRSLEDIHSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNS 320
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 427
++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ +
Sbjct: 321 GLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQQGFLTDDLVSQEENG 380
Query: 428 E-----------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLD 464
+ V P +A L+ +TG+ NR +R LA++KG L
Sbjct: 381 QQQKYLGVCRLPGPGWRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLS 440
Query: 465 DTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+ L A + V + L TEK+VF LG P+ EP ER+
Sbjct: 441 EHALSTAVVRNTHGCKVGSGRVLPTPTEKDVFRLLGLPYREPAERD 486
>gi|343959642|dbj|BAK63678.1| DNA polymerase lambda [Pan troglodytes]
Length = 575
Score = 208 bits (530), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 154/547 (28%), Positives = 257/547 (46%), Gaps = 68/547 (12%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ +++VQ G + VTH++ MD E L+ +
Sbjct: 41 LSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQGPGVTHIVVDEGMDYERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGN--GNTSS 133
+++ WL SL L E+ D+ + I R L Q + G +S
Sbjct: 101 P-QLPPGAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPSRYLDHPQPSKAGQDAS 152
Query: 134 DGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNS---PMSSESLTNTLSTASASP 190
+H ++++ + ++ EAPN+ P+S + ++ T ++
Sbjct: 153 IPPGTHEALLQTA---LSPPPPPTRPVSPPQKAKEAPNTQAQPISDDEASDGEETQVSAA 209
Query: 191 DF----SSHHITD----------PSLL----------YNPPDLNKNITEIFGKLINIYRA 226
D S H+ T P++L + N +ITE L Y
Sbjct: 210 DLEALISGHYPTSLEGDCEPSPAPAVLDKWVCAQPSSQKATNHNLHITEKLEVLAKAYSV 269
Query: 227 LGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFE 286
G+ R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H
Sbjct: 270 QGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI- 328
Query: 287 KDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRI 346
+ V + LF +WG G TAQ Y++G R+L+D++++ SLT Q +GLK++ D+ R+
Sbjct: 329 -SDSVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAVGLKHYSDLLERM 387
Query: 347 PRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY 406
PR E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+
Sbjct: 388 PREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRL 447
Query: 407 VKKLKEMKFLREDLIFSTHSEE-----------------------VYPRDIYAFGLIAWT 443
+ L++ FL +DL+ + + V P +A L+ +T
Sbjct: 448 LDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFT 507
Query: 444 GNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPW 503
G+ NR +R LA++KG L + L A + V L TEK+VF LG P+
Sbjct: 508 GSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPY 567
Query: 504 LEPHERN 510
EP ER+
Sbjct: 568 REPAERD 574
>gi|311705731|gb|ADQ01131.1| DNA polymerase lambda [Pongo abelii]
Length = 568
Score = 208 bits (529), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 153/537 (28%), Positives = 252/537 (46%), Gaps = 55/537 (10%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ ++++Q G + VTH++ MD E L+ +
Sbjct: 41 LSSLRAHVVRTGIGRARAELFEEQIIQHGGQLCPAQGPGVTHIVVDEGMDYERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNG--NTSS 133
+++ WL SL L E+ D+ + I R L Q Q + +S
Sbjct: 101 P-QLPAGAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPSRYLDQPQPSKAEQDAS 152
Query: 134 DGESSHRKKIKSS---------TEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLS 184
+H ++++ ++ + QA+ D E + E S E+L +
Sbjct: 153 IPPGTHEALLQTALSPPPPPQKAKEAPNTQAQPISDDEASDGEETQVSAADLEALISGHY 212
Query: 185 TASASPDF---SSHHITDPSLLYNPP-----DLNKNITEIFGKLINIYRALGEDRRSFSY 236
S D + + D + P + N +ITE L Y G+ R+ Y
Sbjct: 213 PTSLEGDCEPSPAPAVLDKWVCAQPSSQKATNHNLHITEKLEVLAKAYGVQGDKWRALGY 272
Query: 237 YKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISL 296
KAI ++ + S + +PGIGK M + I EI+ +G L KL+H E V + L
Sbjct: 273 AKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLEL 330
Query: 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMER 356
F +WG G TAQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+
Sbjct: 331 FSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQ 390
Query: 357 LLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFL 416
+QKA + ++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL
Sbjct: 391 TVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQQGFL 450
Query: 417 REDLIFSTHSEE-----------------------VYPRDIYAFGLIAWTGNDVLNRRLR 453
+DL+ + + V P +A L+ +TG+ NR +R
Sbjct: 451 TDDLVSQEENGQQQKYLGVCRLPGPGWRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMR 510
Query: 454 LLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
LA++KG L + L A + V L TEK+VF LG P+ EP ER+
Sbjct: 511 ALAKTKGMSLSEHALSTAVVRNTQGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 567
>gi|297687237|ref|XP_002821126.1| PREDICTED: DNA polymerase lambda isoform 1 [Pongo abelii]
gi|395741929|ref|XP_002821128.2| PREDICTED: DNA polymerase lambda isoform 3 [Pongo abelii]
gi|395741932|ref|XP_003777665.1| PREDICTED: DNA polymerase lambda [Pongo abelii]
Length = 568
Score = 208 bits (529), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 157/545 (28%), Positives = 253/545 (46%), Gaps = 71/545 (13%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ ++++Q G + VTH++ MD E L+ +
Sbjct: 41 LSSLRAHVVRTGIGRARAELFEEQIIQHGGQLCPAQGPGVTHIVVDEGMDYERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDG 135
+++ WL SL L E+ D+ + I R L Q Q +
Sbjct: 101 P-QLPPGAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPSRYLDQPQPS------- 145
Query: 136 ESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNS---PMSSESLTNTLSTASASPDF 192
++ I T + A S A EAPN+ P+S + ++ T ++ D
Sbjct: 146 KAEQDASIPPGTHEALLQTALSPPPPPQKA-KEAPNTQAQPISDDEASDGEETQVSAADL 204
Query: 193 ----SSHHITD----------PSLL----------YNPPDLNKNITEIFGKLINIYRALG 228
S H+ T P++L + N +ITE L Y G
Sbjct: 205 EALISGHYPTSLEGDCEPSPAPAVLGKWVCAQPSSQKATNHNLHITEKLEVLAKAYGVQG 264
Query: 229 EDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKD 288
+ R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H
Sbjct: 265 DKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--S 322
Query: 289 EKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPR 348
E V + LF +WG G TAQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR
Sbjct: 323 ESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPR 382
Query: 349 HEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVK 408
E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ +
Sbjct: 383 EEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLD 442
Query: 409 KLKEMKFLREDLIFSTHSEE-----------------------VYPRDIYAFGLIAWTGN 445
L++ FL +DL+ + + V P +A L+ +TG+
Sbjct: 443 SLRQQGFLTDDLVSQEENGQQQKYLGVCRLPGPGWRHRRLDIIVVPYSEFACALLYFTGS 502
Query: 446 DVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLE 505
NR +R LA++KG L + L A + V L TEK+VF LG P+ E
Sbjct: 503 AHFNRSMRALAKTKGMSLSEHALSTAVVRNTQGCKVGPGRVLPTPTEKDVFRLLGLPYRE 562
Query: 506 PHERN 510
P ER+
Sbjct: 563 PAERD 567
>gi|311705755|gb|ADQ01143.1| DNA polymerase lambda [Cercopithecus wolfi]
Length = 575
Score = 208 bits (529), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 155/544 (28%), Positives = 255/544 (46%), Gaps = 62/544 (11%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ +++VQ G + VTH++ MD E L+ +
Sbjct: 41 LSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPVEGPGVTHIVVDEGMDYERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNG--NTSS 133
+++ WL SL L E+ D+ + I R L Q Q + +S
Sbjct: 101 P-RLPPGAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPSRYLDQSQPSKAEQDAS 152
Query: 134 DGESSHRKKIKSS----------------TEDVEHFQAESKGDVETNALSEAPNSPMSSE 177
+H ++++ T++ + QA+ D E + E S E
Sbjct: 153 LPPGTHEALLQTALPLPPSPTRPVSPPQKTKEAPNTQAQPISDDEASDGEETQVSAADLE 212
Query: 178 SLTNTLSTASASPDF---SSHHITDPSLLYNPP-----DLNKNITEIFGKLINIYRALGE 229
+L + AS D + + D + P + N +ITE L Y G+
Sbjct: 213 ALISGYYPASLEGDCEPSPAPVVLDKWVCAQPSSQKATNHNLHITEKLEVLAKAYSVQGD 272
Query: 230 DRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDE 289
R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H E
Sbjct: 273 KWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SE 330
Query: 290 KVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRH 349
V + LF +WG G TAQ Y++G R+L+D++++ SLT Q +GLK+++D R+PR
Sbjct: 331 SVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYNDFLERMPRE 390
Query: 350 EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKK 409
E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ +
Sbjct: 391 EATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDS 450
Query: 410 LKEMKFLREDLIFSTHSEE-----------------------VYPRDIYAFGLIAWTGND 446
L++ FL +DL+ + + V P +A L+ +TG+
Sbjct: 451 LRQQGFLTDDLVSQEENGQQQKYLGVCRLPGPGWRHRRLDIIVVPYSEFACALLYFTGSA 510
Query: 447 VLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEP 506
NR +R LA++KG L + L A + + L TEK+VF LG P+ EP
Sbjct: 511 HFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKMGPGRVLPTPTEKDVFRLLGLPYREP 570
Query: 507 HERN 510
ER+
Sbjct: 571 AERD 574
>gi|311705741|gb|ADQ01136.1| DNA polymerase lambda [Trachypithecus francoisi]
Length = 574
Score = 208 bits (529), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 155/543 (28%), Positives = 255/543 (46%), Gaps = 61/543 (11%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ +++VQ G + VTH++ MD E L+ +
Sbjct: 41 LSSLRAHVVHTGIGRARAELFEKQIVQHGGQLCPVQGPGVTHIVVDEGMDYERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNG--NTSS 133
+++ WL SL L E+ D+ + I +R L Q Q + +S
Sbjct: 101 P-RLPPGAQLVKSAWL--SLCLQERRLVDVAGFSV-----FIPNRYLDQSQPSKAEQDAS 152
Query: 134 DGESSHRKKIKSS---------------TEDVEHFQAESKGDVETNALSEAPNSPMSSES 178
+H ++++ T++ + QA+ D E + E S E+
Sbjct: 153 LPPGTHEALLQTALSPPSPTRPVPPPQKTKEAPNTQAQPISDDEASDGEETQVSAADLEA 212
Query: 179 LTNTLSTASASPDFS---SHHITDPSLLYNPP-----DLNKNITEIFGKLINIYRALGED 230
L + S D + + D + P + N +ITE L Y G+
Sbjct: 213 LISGHYPTSLEGDCEPSPAPVVLDKWVCAQPSSQKATNHNLHITEKLEVLAKAYSVQGDK 272
Query: 231 RRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEK 290
R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H E
Sbjct: 273 WRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SES 330
Query: 291 VRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHE 350
V + LF +WG G TAQ Y++G R+L+D++++ SLT Q +GLK+++D R+PR E
Sbjct: 331 VPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYNDFLERMPREE 390
Query: 351 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 410
++E+ +QKA + ++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L
Sbjct: 391 ATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSL 450
Query: 411 KEMKFLREDLIFSTHSEE-----------------------VYPRDIYAFGLIAWTGNDV 447
++ FL +DL+ + + V P +A L+ +TG+
Sbjct: 451 RQQGFLTDDLVSQEENGQQQKYLGVCRLPGPGWRHRRLDIIVVPYSEFACALLYFTGSAH 510
Query: 448 LNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPH 507
NR +R LA++KG L + L A + V L TEK+VF LG P+ EP
Sbjct: 511 FNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPGQVLPTPTEKDVFRLLGLPYREPA 570
Query: 508 ERN 510
ER+
Sbjct: 571 ERD 573
>gi|332212625|ref|XP_003255420.1| PREDICTED: DNA polymerase lambda isoform 4 [Nomascus leucogenys]
Length = 487
Score = 208 bits (529), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 128/406 (31%), Positives = 202/406 (49%), Gaps = 53/406 (13%)
Query: 133 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 187
SD E+S ++ + S D+E H+ +GD E P + ++ + A
Sbjct: 106 SDDEASDGEETQVSAADLEALISGHYPTSLEGDCE----------PSPASAVLDKWVCAQ 155
Query: 188 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 247
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 156 PSSQKATNH-------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 202
Query: 248 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307
+ S + +PGIGK M + I EI+ +G L KL+H + V + LF +WG G T
Sbjct: 203 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SDSVPVLELFSNIWGAGTKT 260
Query: 308 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
AQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA +
Sbjct: 261 AQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNS 320
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 427
++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ +
Sbjct: 321 GLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQQGFLTDDLVSQEENG 380
Query: 428 E-----------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLD 464
+ V P +A L+ +TG+ NR +R LA++KG L
Sbjct: 381 QQQKYLGVCRLPGPGWRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLS 440
Query: 465 DTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+ L A + V L TEK+VF LG P+ EP ER+
Sbjct: 441 EHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 486
>gi|297687239|ref|XP_002821127.1| PREDICTED: DNA polymerase lambda isoform 2 [Pongo abelii]
Length = 480
Score = 207 bits (528), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 129/406 (31%), Positives = 201/406 (49%), Gaps = 53/406 (13%)
Query: 133 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 187
SD E+S ++ + S D+E H+ +GD E P + ++ A
Sbjct: 99 SDDEASDGEETQVSAADLEALISGHYPTSLEGDCE----------PSPAPAVLGKWVCAQ 148
Query: 188 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 247
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 149 PSSQKATNH-------------NLHITEKLEVLAKAYGVQGDKWRALGYAKAINALKSFH 195
Query: 248 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307
+ S + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G T
Sbjct: 196 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKT 253
Query: 308 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
AQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA +
Sbjct: 254 AQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNS 313
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 427
++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ +
Sbjct: 314 GLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQQGFLTDDLVSQEENG 373
Query: 428 E-----------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLD 464
+ V P +A L+ +TG+ NR +R LA++KG L
Sbjct: 374 QQQKYLGVCRLPGPGWRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLS 433
Query: 465 DTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+ L A + V L TEK+VF LG P+ EP ER+
Sbjct: 434 EHALSTAVVRNTQGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 479
>gi|10433887|dbj|BAB14050.1| unnamed protein product [Homo sapiens]
gi|119570146|gb|EAW49761.1| polymerase (DNA directed), lambda, isoform CRA_e [Homo sapiens]
Length = 487
Score = 207 bits (528), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 129/406 (31%), Positives = 202/406 (49%), Gaps = 53/406 (13%)
Query: 133 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 187
SD E+S ++ + S D+E H+ +GD E P + ++ + A
Sbjct: 106 SDDEASDGEETQVSAADLEALISGHYPTSLEGDCE----------PSPAPAVLDKWVCAQ 155
Query: 188 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 247
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 156 PSSQKATNH-------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 202
Query: 248 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307
+ S + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G T
Sbjct: 203 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKT 260
Query: 308 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
AQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA +
Sbjct: 261 AQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNS 320
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 427
++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ +
Sbjct: 321 GLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENG 380
Query: 428 E-----------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLD 464
+ V P +A L+ +TG+ NR +R LA++KG L
Sbjct: 381 QQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLS 440
Query: 465 DTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+ L A + V L TEK+VF LG P+ EP ER+
Sbjct: 441 EHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 486
>gi|10732732|gb|AAG22519.1|AF283478_1 DNA polymerase beta2 [Homo sapiens]
Length = 575
Score = 207 bits (528), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 129/406 (31%), Positives = 202/406 (49%), Gaps = 53/406 (13%)
Query: 133 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 187
SD E+S ++ + S D+E H+ +GD E P + ++ + A
Sbjct: 194 SDDEASDGEETQVSAADLEALISGHYPTSLEGDCE----------PSPAPAVLDKWVCAQ 243
Query: 188 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 247
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 244 PSSQKATNH-------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 290
Query: 248 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307
+ S + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G T
Sbjct: 291 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKT 348
Query: 308 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
AQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA +
Sbjct: 349 AQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNS 408
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 427
++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ +
Sbjct: 409 GLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENG 468
Query: 428 E-----------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLD 464
+ V P +A L+ +TG+ NR +R LA++KG L
Sbjct: 469 QQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLS 528
Query: 465 DTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+ L A + V L TEK+VF LG P+ EP ER+
Sbjct: 529 EHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 574
>gi|114632443|ref|XP_001170074.1| PREDICTED: DNA polymerase lambda isoform 13 [Pan troglodytes]
gi|114632449|ref|XP_001170138.1| PREDICTED: DNA polymerase lambda isoform 16 [Pan troglodytes]
gi|410044269|ref|XP_003951782.1| PREDICTED: DNA polymerase lambda [Pan troglodytes]
gi|410219296|gb|JAA06867.1| polymerase (DNA directed), lambda [Pan troglodytes]
gi|410262932|gb|JAA19432.1| polymerase (DNA directed), lambda [Pan troglodytes]
gi|410307616|gb|JAA32408.1| polymerase (DNA directed), lambda [Pan troglodytes]
gi|410354323|gb|JAA43765.1| polymerase (DNA directed), lambda [Pan troglodytes]
Length = 575
Score = 207 bits (528), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 154/547 (28%), Positives = 256/547 (46%), Gaps = 68/547 (12%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ +++VQ G + VTH++ MD E L+ +
Sbjct: 41 LSSLRAHVVRTGIGRARTELFEKQIVQHGGQLCPAQGPGVTHIVVDEGMDYERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGN--GNTSS 133
+++ WL SL L E+ D+ + I R L Q + G +S
Sbjct: 101 P-QLPPGAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPSRYLDHPQPSKAGQDAS 152
Query: 134 DGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNS---PMSSESLTNTLSTASASP 190
+H ++++ + ++ EAPN+ P+S + ++ T ++
Sbjct: 153 IPPGTHEALLQTA---LSPPPPPTRPVSPPQKAKEAPNTQAQPISDDEASDGEETQVSAA 209
Query: 191 DF----SSHHITD----------PSLL----------YNPPDLNKNITEIFGKLINIYRA 226
D S H+ T P++L + N +ITE L Y
Sbjct: 210 DLEALISGHYPTSLEGDCEPSPAPAVLDKWVCAQPSSQKATNHNLHITEKLEVLAKAYSV 269
Query: 227 LGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFE 286
G+ R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H
Sbjct: 270 QGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI- 328
Query: 287 KDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRI 346
+ V + LF +WG G TAQ Y++G R+L+D++++ SLT Q +GLK++ D R+
Sbjct: 329 -SDSVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAVGLKHYSDFLERM 387
Query: 347 PRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY 406
PR E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+
Sbjct: 388 PREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRL 447
Query: 407 VKKLKEMKFLREDLIFSTHSEE-----------------------VYPRDIYAFGLIAWT 443
+ L++ FL +DL+ + + V P +A L+ +T
Sbjct: 448 LDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFT 507
Query: 444 GNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPW 503
G+ NR +R LA++KG L + L A + V L TEK+VF LG P+
Sbjct: 508 GSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPY 567
Query: 504 LEPHERN 510
EP ER+
Sbjct: 568 REPAERD 574
>gi|7019491|ref|NP_037406.1| DNA polymerase lambda isoform a [Homo sapiens]
gi|291463287|ref|NP_001167555.1| DNA polymerase lambda isoform a [Homo sapiens]
gi|17367126|sp|Q9UGP5.1|DPOLL_HUMAN RecName: Full=DNA polymerase lambda; Short=Pol Lambda; AltName:
Full=DNA polymerase beta-2; Short=Pol beta2; AltName:
Full=DNA polymerase kappa
gi|6746387|gb|AAF27541.1|AF161019_1 DNA polymerase lambda [Homo sapiens]
gi|21780368|gb|AAM77696.1|AF525924_1 polymerase (DNA directed), lambda [Homo sapiens]
gi|6687796|emb|CAB65074.1| DNA polymerase lambda [Homo sapiens]
gi|119570144|gb|EAW49759.1| polymerase (DNA directed), lambda, isoform CRA_c [Homo sapiens]
gi|119570151|gb|EAW49766.1| polymerase (DNA directed), lambda, isoform CRA_c [Homo sapiens]
gi|119570153|gb|EAW49768.1| polymerase (DNA directed), lambda, isoform CRA_c [Homo sapiens]
gi|168275706|dbj|BAG10573.1| DNA polymerase lambda [synthetic construct]
Length = 575
Score = 207 bits (528), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 129/406 (31%), Positives = 202/406 (49%), Gaps = 53/406 (13%)
Query: 133 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 187
SD E+S ++ + S D+E H+ +GD E P + ++ + A
Sbjct: 194 SDDEASDGEETQVSAADLEALISGHYPTSLEGDCE----------PSPAPAVLDKWVCAQ 243
Query: 188 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 247
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 244 PSSQKATNH-------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 290
Query: 248 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307
+ S + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G T
Sbjct: 291 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKT 348
Query: 308 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
AQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA +
Sbjct: 349 AQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNS 408
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 427
++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ +
Sbjct: 409 GLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENG 468
Query: 428 E-----------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLD 464
+ V P +A L+ +TG+ NR +R LA++KG L
Sbjct: 469 QQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLS 528
Query: 465 DTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+ L A + V L TEK+VF LG P+ EP ER+
Sbjct: 529 EHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 574
>gi|397510316|ref|XP_003825544.1| PREDICTED: DNA polymerase lambda isoform 5 [Pan paniscus]
Length = 487
Score = 207 bits (528), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 129/406 (31%), Positives = 202/406 (49%), Gaps = 53/406 (13%)
Query: 133 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 187
SD E+S ++ + S D+E H+ +GD E P + ++ + A
Sbjct: 106 SDDEASDGEETQVSAADLEALISGHYPTSLEGDCE----------PSPAPAVLDKWVCAQ 155
Query: 188 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 247
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 156 PSSQKATNH-------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 202
Query: 248 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307
+ S + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G T
Sbjct: 203 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKT 260
Query: 308 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
AQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA +
Sbjct: 261 AQMWYQQGFRSLEDIRSQASLTTQQAVGLKHYSDFLERMPREEATEIEQTVQKAAQAFNS 320
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 427
++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ +
Sbjct: 321 GLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENG 380
Query: 428 E-----------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLD 464
+ V P +A L+ +TG+ NR +R LA++KG L
Sbjct: 381 QQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLS 440
Query: 465 DTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+ L A + V L TEK+VF LG P+ EP ER+
Sbjct: 441 EHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 486
>gi|388453987|ref|NP_001253835.1| DNA polymerase lambda [Macaca mulatta]
gi|311705733|gb|ADQ01132.1| DNA polymerase lambda [Macaca fascicularis]
gi|355562721|gb|EHH19315.1| hypothetical protein EGK_19997 [Macaca mulatta]
gi|355783042|gb|EHH64963.1| hypothetical protein EGM_18298 [Macaca fascicularis]
gi|384946496|gb|AFI36853.1| DNA polymerase lambda isoform a [Macaca mulatta]
gi|384946498|gb|AFI36854.1| DNA polymerase lambda isoform a [Macaca mulatta]
Length = 575
Score = 207 bits (528), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 155/544 (28%), Positives = 255/544 (46%), Gaps = 62/544 (11%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ +++VQ G + VTH++ MD E L+ +
Sbjct: 41 LSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPVQGPGVTHIVVDEGMDYERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNG--NTSS 133
+++ WL SL L E+ D+ + I R L Q Q + +S
Sbjct: 101 P-RLPPGAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPSRYLDQSQPSKAEQDAS 152
Query: 134 DGESSHRKKIKSS----------------TEDVEHFQAESKGDVETNALSEAPNSPMSSE 177
+H ++++ T++ + QA+ D E + E S E
Sbjct: 153 LPPGTHEALLQTALPPPPSPTRPVSPPQKTKEAPNTQAQPISDDEASDGEETQVSAADLE 212
Query: 178 SLTNTLSTASASPDFS---SHHITDPSLLYNPP-----DLNKNITEIFGKLINIYRALGE 229
+L + AS D + + D + P + N +ITE L Y G+
Sbjct: 213 ALISGHYPASLEGDCDPSPAPVVLDKWVCAQPSSQKATNHNLHITEKLEVLAKAYSVQGD 272
Query: 230 DRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDE 289
R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H E
Sbjct: 273 KWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SE 330
Query: 290 KVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRH 349
V + LF +WG G TAQ Y++G R+L+D++++ SLT Q +GLK+++D R+PR
Sbjct: 331 SVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYNDFLERMPRE 390
Query: 350 EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKK 409
E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ +
Sbjct: 391 EATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDS 450
Query: 410 LKEMKFLREDLIFSTHSEE-----------------------VYPRDIYAFGLIAWTGND 446
L++ FL +DL+ + + V P +A L+ +TG+
Sbjct: 451 LRQQGFLTDDLVSQEENGQQQKYLGVCRLPGPGWRHRRLDIIVVPYSEFACALLYFTGSA 510
Query: 447 VLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEP 506
NR +R LA++KG L + L A + + L TEK+VF LG P+ EP
Sbjct: 511 HFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKMGPGRVLPTPTEKDVFRLLGLPYREP 570
Query: 507 HERN 510
ER+
Sbjct: 571 AERD 574
>gi|311705753|gb|ADQ01142.1| DNA polymerase lambda [Nomascus leucogenys]
Length = 574
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 128/406 (31%), Positives = 202/406 (49%), Gaps = 53/406 (13%)
Query: 133 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 187
SD E+S ++ + S D+E H+ +GD E P + ++ + A
Sbjct: 193 SDDEASDGEETQVSAADLEALISGHYPTSLEGDCE----------PSPASAVLDKWVCAQ 242
Query: 188 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 247
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 243 PSSQKATNH-------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 289
Query: 248 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307
+ S + +PGIGK M + I EI+ +G L KL+H + V + LF +WG G T
Sbjct: 290 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SDSVPVLELFSNIWGAGTKT 347
Query: 308 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
AQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA +
Sbjct: 348 AQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNS 407
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 427
++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ +
Sbjct: 408 GLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQQGFLTDDLVSQEENG 467
Query: 428 E-----------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLD 464
+ V P +A L+ +TG+ NR +R LA++KG L
Sbjct: 468 QQQKYLGVCRLPGPGWRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLS 527
Query: 465 DTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+ L A + V L TEK+VF LG P+ EP ER+
Sbjct: 528 EHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 573
>gi|332212619|ref|XP_003255417.1| PREDICTED: DNA polymerase lambda isoform 1 [Nomascus leucogenys]
gi|332212621|ref|XP_003255418.1| PREDICTED: DNA polymerase lambda isoform 2 [Nomascus leucogenys]
Length = 574
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 157/564 (27%), Positives = 253/564 (44%), Gaps = 102/564 (18%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ +++VQ G + VTH++ MD E L+ +
Sbjct: 40 LSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQGPGVTHIVVDEGMDYERALRLLRL 99
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEK----------------------------------V 101
+++ WL SL L E+
Sbjct: 100 P-RLPPGAQLVKSAWL--SLCLQERRLVDVAGFSIFIPSRYLDQPQPSKAEQHASIPPGT 156
Query: 102 SEDLYRIKLDPEGENIADRVLSQIQGN---GNTS----SDGESSHRKKIKSSTEDVE--- 151
E L + L P + R +S Q NT SD E+S ++ + S D+E
Sbjct: 157 CEALLQTALSPPPSST--RPVSPPQKAKEAANTQAQPISDDEASDGEETQVSAADLEALI 214
Query: 152 --HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDL 209
H+ +GD E P + ++ + A S +++H
Sbjct: 215 SGHYPTSLEGDCE----------PSPASAVLDKWVCAQPSSQKATNH------------- 251
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N +ITE L Y G+ R+ Y KAI ++ + S + +PGIGK M +
Sbjct: 252 NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEK 311
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I EI+ +G L KL+H + V + LF +WG G TAQ Y++G R+L+D++++ SLT
Sbjct: 312 IIEILESGHLRKLDHI--SDSVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLT 369
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
Q +GLK++ D R+PR E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV
Sbjct: 370 TQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDV 429
Query: 390 VIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE--------------------- 428
+I HPD +SH+G S+ + L++ FL +DL+ + +
Sbjct: 430 LITHPDGRSHRGIFSRLLDSLRQQGFLTDDLVSQEENGQQQKYLGVCRLPGPGWRHRRLD 489
Query: 429 --VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTS 486
V P +A L+ +TG+ NR +R LA++KG L + L A + V
Sbjct: 490 IIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPGRV 549
Query: 487 LKFDTEKEVFDFLGFPWLEPHERN 510
L TEK+VF LG P+ EP ER+
Sbjct: 550 LPTPTEKDVFRLLGLPYREPAERD 573
>gi|291228090|ref|XP_002734013.1| PREDICTED: Polymerase (DNA directed), lambda-like [Saccoglossus
kowalevskii]
Length = 642
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 151/570 (26%), Positives = 276/570 (48%), Gaps = 79/570 (13%)
Query: 4 KTTRKPTPALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLA 63
K T +PA + + +F+++ G+ R I ++ + G T+ E++ + THV+
Sbjct: 88 KQTEAQSPA---DKFMKDVNIFILQAGLGKMRANILSKQFTKYGGTIHEQILDETTHVVV 144
Query: 64 ---MDLEALLQ----QVSKQHLARFKGSVIRYQWLEDSL--------------------- 95
M+++ + HL KG+ + + E+ L
Sbjct: 145 DEKMEIDRFCRILKLDTPPTHLKIVKGNWLSNCFAEEKLVDTCDFELDVNTDAKLEKDER 204
Query: 96 RLGEKVSEDLYR-IKLDPEGENIADRVLS-QIQGNGNTSSDGESSHRKKIKSSTEDVEHF 153
+ EK+ D+ R I P G + +D V++ +I SS +SS+ + KS+
Sbjct: 205 QSKEKLPADVTRGINEQPGGHSKSDVVVADEIHP---CSSKTDSSYHTEAKSN------- 254
Query: 154 QAESKGDVETNALSEAPNSPMSSESLTN----TLSTASASPDFSSHHITDPSLLYNPP-- 207
+SKG ++ E + S T+ S+A+++P+ S + + + P
Sbjct: 255 --QSKGYDSEDSAYEPSDDEDYLSSFTDGPTSGTSSATSTPNTSPQKLPKGNWVCAKPVS 312
Query: 208 ----DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIG 263
+ NK+IT+ L+ Y+ + R+ Y KAI ++ I + ++ +PGIG
Sbjct: 313 NLGTNHNKHITDKLQILMQTYKNTKDQWRALGYSKAISALKNYHKAITTWEEANSIPGIG 372
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 323
K M D + EI+ +G L K+++ + E+V+ I+LF ++ G+GP AQ+LY++G RT+DD++
Sbjct: 373 KKMADKVWEIIESGHLRKIDYVCQGEEVKAINLFTKIHGVGPTIAQELYQQGFRTIDDVR 432
Query: 324 NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKAS 383
+ L Q++G+K+FDD R+ R E ++E++++ + P +I + GSYRRGK +
Sbjct: 433 EKAKLNRQQKIGIKHFDDFLDRMSREEAGEIEKVVKDMALSINPGLIAMACGSYRRGKPT 492
Query: 384 CGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE--------------- 428
CGD+DV++ HPD +SHKG K ++KL+ F+ +DL+ + E
Sbjct: 493 CGDVDVIVTHPDGRSHKGIFHKLLEKLRATGFITDDLVSNEDVGEQKKYLGVCKLPGEDR 552
Query: 429 --------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
V P Y ++ +TG+ NR +R LA KG L++ + G ++
Sbjct: 553 KHRRLDIIVVPYHEYPCAIMYFTGSSHFNRSMRALAGKKGMSLNEHAMKSGVIRKGHEK- 611
Query: 481 VRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+ S+ +E++VF LG + P ER+
Sbjct: 612 ISEGVSIPVKSEEDVFRILGLEYRTPKERD 641
>gi|444517529|gb|ELV11632.1| DNA polymerase lambda [Tupaia chinensis]
Length = 574
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 156/568 (27%), Positives = 259/568 (45%), Gaps = 101/568 (17%)
Query: 14 DSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLA---MDLEALL 70
DS + +R +V G+ R +++ +++VQ G + + VT+++A MD E L
Sbjct: 36 DSGEWLSPLRAHVVPTGIGRTRAELFEKQIVQHGGQICPAQAPGVTYIVADEGMDCERTL 95
Query: 71 QQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRI-----KLDPEGENIAD------ 119
+ + +++ WL L+ V + I LD + AD
Sbjct: 96 RLLKLP-RLPPGAQLVKSAWLSLCLQDRRLVDTAGFSIFVPNRYLDQPQPSKADQGSPAS 154
Query: 120 ------------------RVLSQIQ-------GNGNTSSDGESSHRKKIKSSTEDVE--- 151
R +S + +D ESS ++ + S D+E
Sbjct: 155 GAHEALPRTAHTPPSPPARPVSPPRQAEEAPSTQAQPGTDDESSDGEETQVSAADLEALI 214
Query: 152 --HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDL 209
H+ +GD E N + EA L + +S ++H
Sbjct: 215 SGHYPTPPEGDAEPNPVPEA---------LDKWVCAQPSSQKATNH-------------- 251
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N +ITE L YR G+ R+ Y KAI ++ + S + +PGIGK M +
Sbjct: 252 NAHITEKLEVLAKAYRVQGDQWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEK 311
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
+ EI+ +G L KL+H + V + LF +WG G TA+ Y +G R+L+D++ + +LT
Sbjct: 312 VLEILESGHLRKLDHV--SDSVPVLELFSNIWGAGTKTARMWYYQGFRSLEDIRTQATLT 369
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
Q +GLK++DD R+PR E ++E+ +++A + + P ++ + GSYRRGKA+CGD+DV
Sbjct: 370 TQQAIGLKHYDDFLDRMPREEAAEIEQTVREAAQALNPGLLCVACGSYRRGKATCGDVDV 429
Query: 390 VIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE--------------------- 428
++ HPD +SH+G + L++ FL +DL+ +H E
Sbjct: 430 LVTHPDGRSHQGVFRLLLDSLRQRGFLTDDLV--SHEENGQQQKYLGVCRLPGPGRRHRR 487
Query: 429 ----VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVR-- 482
V P A L+ +TG+ NR +R LA++KG L + L +T + +GV+
Sbjct: 488 LDIIVVPYCELACALLYFTGSAHFNRSMRALAKTKGMSLSEHAL--STAVNRNSRGVKLG 545
Query: 483 ARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+L TEK+VF LG P+ EP ER+
Sbjct: 546 PGRALPTPTEKDVFSLLGLPYREPAERD 573
>gi|380811840|gb|AFE77795.1| DNA polymerase lambda isoform a [Macaca mulatta]
Length = 575
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 155/544 (28%), Positives = 254/544 (46%), Gaps = 62/544 (11%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ +++VQ G + VTH++ MD E L+ +
Sbjct: 41 LSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPVQGPGVTHIVVDEGMDYERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNG--NTSS 133
+++ WL SL L E+ D+ + I R L Q Q + +S
Sbjct: 101 P-RLPPGAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPSRYLDQSQPSKAEQDAS 152
Query: 134 DGESSHRKKIKSS----------------TEDVEHFQAESKGDVETNALSEAPNSPMSSE 177
+H ++++ T++ + QA+ D E + E S E
Sbjct: 153 LPPGTHEALLQTALPPPPSPTRPVSPPQKTKEAPNTQAQPISDDEASDGEETQVSAADLE 212
Query: 178 SLTNTLSTASASPDFS---SHHITDPSLLYNPP-----DLNKNITEIFGKLINIYRALGE 229
+L + AS D + + D + P + N +ITE L Y G+
Sbjct: 213 ALISGHYPASLEGDCDPSPAPVVLDKWVCAQPSSQKATNHNLHITEKLEVLAKAYSVQGD 272
Query: 230 DRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDE 289
R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H E
Sbjct: 273 KWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SE 330
Query: 290 KVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRH 349
V + LF +WG G TAQ Y++G R+L+D++++ SLT Q +GLK+++D R+PR
Sbjct: 331 SVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYNDFLERMPRE 390
Query: 350 EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKK 409
E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ +
Sbjct: 391 EATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDS 450
Query: 410 LKEMKFLREDLIFSTHSEE-----------------------VYPRDIYAFGLIAWTGND 446
L++ FL +DL+ + + V P +A L+ +TG+
Sbjct: 451 LRQQGFLTDDLVSQEENGQQQKYLGVCRLPGPGWRHRRLDIIVVPYSEFACALLYFTGSA 510
Query: 447 VLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEP 506
NR +R LA++KG L + L A + + L TEK VF LG P+ EP
Sbjct: 511 HFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKMGPGQVLPTPTEKVVFRLLGLPYREP 570
Query: 507 HERN 510
ER+
Sbjct: 571 AERD 574
>gi|46250018|gb|AAH68529.1| POLL protein [Homo sapiens]
Length = 575
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 129/406 (31%), Positives = 201/406 (49%), Gaps = 53/406 (13%)
Query: 133 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 187
SD E+S ++ + S D+E H+ +GD E P + ++ + A
Sbjct: 194 SDDEASDGEETQVSAADLEALISGHYPTSLEGDCE----------PSPAPAVLDKWVCAQ 243
Query: 188 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 247
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 244 PSSQKATNH-------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 290
Query: 248 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307
+ S +PGIGK M + I EI+ +G L KL+H E V + LF +WG G T
Sbjct: 291 KPVTSYQGACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKT 348
Query: 308 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
AQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA +
Sbjct: 349 AQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNS 408
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 427
++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ +
Sbjct: 409 GLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENG 468
Query: 428 E-----------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLD 464
+ V P +A L+ +TG+ NR +R LA++KG L
Sbjct: 469 QQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLS 528
Query: 465 DTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+ L A + V L TEK+VF LG P+ EP ER+
Sbjct: 529 EHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 574
>gi|114632455|ref|XP_001169987.1| PREDICTED: DNA polymerase lambda isoform 9 [Pan troglodytes]
Length = 487
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 128/406 (31%), Positives = 202/406 (49%), Gaps = 53/406 (13%)
Query: 133 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 187
SD E+S ++ + S D+E H+ +GD E P + ++ + A
Sbjct: 106 SDDEASDGEETQVSAADLEALISGHYPTSLEGDCE----------PSPAPAVLDKWVCAQ 155
Query: 188 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 247
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 156 PSSQKATNH-------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 202
Query: 248 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307
+ S + +PGIGK M + I EI+ +G L KL+H + V + LF +WG G T
Sbjct: 203 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SDSVPVLELFSNIWGAGTKT 260
Query: 308 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
AQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA +
Sbjct: 261 AQMWYQQGFRSLEDIRSQASLTTQQAVGLKHYSDFLERMPREEATEIEQTVQKAAQAFNS 320
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 427
++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ +
Sbjct: 321 GLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENG 380
Query: 428 E-----------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLD 464
+ V P +A L+ +TG+ NR +R LA++KG L
Sbjct: 381 QQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLS 440
Query: 465 DTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+ L A + V L TEK+VF LG P+ EP ER+
Sbjct: 441 EHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 486
>gi|75075271|sp|Q4R380.1|DPOLL_MACFA RecName: Full=DNA polymerase lambda; Short=Pol Lambda
gi|67972190|dbj|BAE02437.1| unnamed protein product [Macaca fascicularis]
Length = 575
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 154/544 (28%), Positives = 255/544 (46%), Gaps = 62/544 (11%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ +++VQ G + VTH++ MD E L+ +
Sbjct: 41 LSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPVQGPGVTHIVVDEGMDYERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNG--NTSS 133
+++ WL SL L E+ D+ + I + L Q Q + +S
Sbjct: 101 P-RLPPGAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPSKYLDQSQPSKAEQDAS 152
Query: 134 DGESSHRKKIKSS----------------TEDVEHFQAESKGDVETNALSEAPNSPMSSE 177
+H ++++ T++ + QA+ D E + E S E
Sbjct: 153 LPPGTHEALLQTALPPPPSPTRPVSPPQKTKEAPNTQAQPISDDEASDGEETQVSAADLE 212
Query: 178 SLTNTLSTASASPDFS---SHHITDPSLLYNPP-----DLNKNITEIFGKLINIYRALGE 229
+L + AS D + + D + P + N +ITE L Y G+
Sbjct: 213 ALISGHYPASLEGDCDPSPAPVVLDKWVCAQPSSQKATNHNLHITEKLEVLAKAYSVQGD 272
Query: 230 DRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDE 289
R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H E
Sbjct: 273 KWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SE 330
Query: 290 KVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRH 349
V + LF +WG G TAQ Y++G R+L+D++++ SLT Q +GLK+++D R+PR
Sbjct: 331 SVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYNDFLERMPRE 390
Query: 350 EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKK 409
E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ +
Sbjct: 391 EATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDS 450
Query: 410 LKEMKFLREDLIFSTHSEE-----------------------VYPRDIYAFGLIAWTGND 446
L++ FL +DL+ + + V P +A L+ +TG+
Sbjct: 451 LRQQGFLTDDLVSQEENGQQQKYLGVCRLPGPGWRHRRLDIIVVPYSEFACALLYFTGSA 510
Query: 447 VLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEP 506
NR +R LA++KG L + L A + + L TEK+VF LG P+ EP
Sbjct: 511 HFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKMGPGRVLPTPTEKDVFRLLGLPYREP 570
Query: 507 HERN 510
ER+
Sbjct: 571 AERD 574
>gi|395828239|ref|XP_003787293.1| PREDICTED: DNA polymerase lambda [Otolemur garnettii]
Length = 571
Score = 206 bits (524), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 154/542 (28%), Positives = 251/542 (46%), Gaps = 62/542 (11%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++++++VQ G + VTH++ MD E L+ +
Sbjct: 41 LSSLRAHIVPTGIGRARAELFKKQIVQHGGRICPAQDPGVTHIVVDEGMDYERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDG 135
+++ WL SL L E+ D+ + I +R L Q Q N
Sbjct: 101 P-QLPLGAHLVKSAWL--SLCLQERRLVDVAGFSI-----FIPNRYLDQPQPNKTEQDST 152
Query: 136 ESSHRKKIKS--STEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFS 193
S H + + S K + +A + + +S+S +STA S
Sbjct: 153 PSVHEAVLMTALSPPSTRPVSPPQKAEEAPSAQPQPISDDETSDSEEMRVSTADLEALIS 212
Query: 194 SHHIT------DPSLLYNPPDL--------------NKNITEIFGKLINIYRALGEDRRS 233
H+ T +P+L + D N +ITE L YR G+ R+
Sbjct: 213 GHYPTPLEGDREPTLAPDHLDKWVCAQSSSQKATNHNLHITEKLEVLAKAYRVQGDKWRA 272
Query: 234 FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRT 293
Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H E V
Sbjct: 273 LGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPV 330
Query: 294 ISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQ 353
+ LF +WG G TA Y +G R+L+D++++ SLT Q +GLK++DD R+PR E +
Sbjct: 331 LELFSNIWGAGTKTALMWYHQGFRSLEDIRSQASLTIQQAIGLKHYDDFLERMPREEAAE 390
Query: 354 MERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEM 413
+E+ +++A P ++ + GS+RRGK +CGD+DV+I HPD +SH+G + + L+
Sbjct: 391 IEQTVREAAHAFNPGLLCVACGSFRRGKVTCGDVDVLITHPDGQSHQGIFTLLLDTLRHQ 450
Query: 414 KFLREDLIFSTHSEE-----------------------VYPRDIYAFGLIAWTGNDVLNR 450
FL +DL+ + + + P +A L+ +TG+ NR
Sbjct: 451 GFLTDDLVSQEENGQQKKYLGVCQLPGPGRRHRRLDIIIVPYSEFACALLYFTGSAHFNR 510
Query: 451 RLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTS--LKFDTEKEVFDFLGFPWLEPHE 508
+R LA++KG L + L +T QG + L TEK+VF LG P+ EP E
Sbjct: 511 SMRALAKTKGMSLSEHAL--STDVVRNTQGFKVGPGRVLPTPTEKDVFRLLGLPYREPAE 568
Query: 509 RN 510
R+
Sbjct: 569 RD 570
>gi|62079061|ref|NP_001014190.1| DNA polymerase lambda [Rattus norvegicus]
gi|81883396|sp|Q5RKI3.1|DPOLL_RAT RecName: Full=DNA polymerase lambda; Short=Pol Lambda
gi|55715673|gb|AAH85841.1| Polymerase (DNA directed), lambda [Rattus norvegicus]
gi|149040271|gb|EDL94309.1| similar to DNA polymerase lambda [Rattus norvegicus]
Length = 573
Score = 206 bits (524), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 146/545 (26%), Positives = 247/545 (45%), Gaps = 51/545 (9%)
Query: 12 ALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEA 68
A D+ G + +R ++ G+ R +++ ++++Q G V + VTH++ MD E
Sbjct: 33 AGDARGWLSSLRAHIMPTGIGRARAELFEKQIIQHGGQVCSAQAPGVTHIVVDEGMDYER 92
Query: 69 LLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGN 128
L+ + L +++ WL SL L EK D L ++ + S+ +
Sbjct: 93 ALRLLRLPQLPP-GAQLVKSAWL--SLCLQEKKLTDTDGFSLSSPKRSLNEPQPSKSGQD 149
Query: 129 GNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASA 188
+ R + S K + ++ + +S+ +S+A
Sbjct: 150 ASAPGTQGVLPRTTLSLSPPCTRAVSPPPKAEKPPKTQTQLSSEDEASDGEGPQVSSADL 209
Query: 189 SPDFSSHHITDPSLLYNP--------------------PDLNKNITEIFGKLINIYRALG 228
S H+ T P P + N +ITE L Y G
Sbjct: 210 QALISGHYPTPPGEDGGPDPAPEALGKWVCAQPSSQKATNYNLHITEKLEVLAKAYNVQG 269
Query: 229 EDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKD 288
+ R+ Y KAI ++ + S + +PG+G+ M + + EI+ +G L KL+H
Sbjct: 270 DKWRALGYAKAINALKSFHKPVSSYQEACSIPGVGRRMAEKVMEILESGHLRKLDHIS-- 327
Query: 289 EKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPR 348
+ V + LF +WG G TAQ Y +G R+L+D++ SLT Q +GLK++DD R+PR
Sbjct: 328 DSVPVLELFSNIWGAGTKTAQMWYHQGFRSLEDIRGLASLTAQQAIGLKHYDDFLDRMPR 387
Query: 349 HEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVK 408
E ++E++++ + + P ++ + GS+RRGK +CGD+DV+I HPD +SH+G S +
Sbjct: 388 EEAAEIEQMVRVSAQAFNPGLLCVACGSFRRGKVTCGDVDVLITHPDGRSHQGIFSPLLD 447
Query: 409 KLKEMKFLREDLIFSTHSEE-----------------------VYPRDIYAFGLIAWTGN 445
L++ FL +DL+ + + V P +A L+ +TG+
Sbjct: 448 SLRQQGFLTDDLVSQEENGQQQKYLGVCRLPGAGQRHRRLDIIVVPYSEFACALLYFTGS 507
Query: 446 DVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLE 505
NR +R LA++KG L + L A + V A L TEK+VF LG P+ E
Sbjct: 508 AHFNRSMRALAKTKGMSLSEHALSAAVVRNSQGVKVGAGQVLPTPTEKDVFKLLGLPYRE 567
Query: 506 PHERN 510
P ER+
Sbjct: 568 PAERD 572
>gi|402881277|ref|XP_003904200.1| PREDICTED: DNA polymerase lambda isoform 4 [Papio anubis]
Length = 487
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 127/406 (31%), Positives = 203/406 (50%), Gaps = 53/406 (13%)
Query: 133 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 187
SD E+S ++ + S D+E H+ A +GD + P + + + A
Sbjct: 106 SDDEASDGEETQVSAADLEALISGHYPASLEGDCD----------PSPAPVVLDKWVCAQ 155
Query: 188 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 247
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 156 PSSQKATNH-------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 202
Query: 248 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307
+ S + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G T
Sbjct: 203 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKT 260
Query: 308 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
A+ Y++G R+L+D++++ SLT Q +GLK+++D R+PR E ++E+ +QKA +
Sbjct: 261 ARMWYQQGFRSLEDIRSQASLTTQQAIGLKHYNDFLERMPREEATEIEQTVQKAAQAFNS 320
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 427
++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ +
Sbjct: 321 GLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQQGFLTDDLVSQEENG 380
Query: 428 E-----------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLD 464
+ V P +A L+ +TG+ NR +R LA++KG L
Sbjct: 381 QQQKYLGVCRLPGPGWRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLS 440
Query: 465 DTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+ L A + + L TEK+VF LG P+ EP ER+
Sbjct: 441 EHALSTAVVRNTHGCKMGPGRVLPTPTEKDVFRLLGLPYREPAERD 486
>gi|402881271|ref|XP_003904197.1| PREDICTED: DNA polymerase lambda isoform 1 [Papio anubis]
gi|402881273|ref|XP_003904198.1| PREDICTED: DNA polymerase lambda isoform 2 [Papio anubis]
gi|311705727|gb|ADQ01129.1| DNA polymerase lambda [Lophocebus albigena]
gi|311705743|gb|ADQ01137.1| DNA polymerase lambda [Papio anubis]
Length = 575
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 154/544 (28%), Positives = 255/544 (46%), Gaps = 62/544 (11%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ +++VQ G + VTH++ MD E L+ +
Sbjct: 41 LSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPVQGPGVTHIVVDEGMDYERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNG--NTSS 133
+++ WL SL L E+ D+ + I R L Q Q + +S
Sbjct: 101 P-RLPPGAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPSRYLDQSQPSKAEQDAS 152
Query: 134 DGESSHRKKIKSS----------------TEDVEHFQAESKGDVETNALSEAPNSPMSSE 177
+H ++++ T++ + QA+ D E + E S E
Sbjct: 153 LPPGTHEALLQTALPPPPSPTRPVSPPQKTKEAPNTQAQPISDDEASDGEETQVSAADLE 212
Query: 178 SLTNTLSTASASPDFS---SHHITDPSLLYNPP-----DLNKNITEIFGKLINIYRALGE 229
+L + AS D + + D + P + N +ITE L Y G+
Sbjct: 213 ALISGHYPASLEGDCDPSPAPVVLDKWVCAQPSSQKATNHNLHITEKLEVLAKAYSVQGD 272
Query: 230 DRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDE 289
R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H E
Sbjct: 273 KWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SE 330
Query: 290 KVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRH 349
V + LF +WG G TA+ Y++G R+L+D++++ SLT Q +GLK+++D R+PR
Sbjct: 331 SVPVLELFSNIWGAGTKTARMWYQQGFRSLEDIRSQASLTTQQAIGLKHYNDFLERMPRE 390
Query: 350 EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKK 409
E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ +
Sbjct: 391 EATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDS 450
Query: 410 LKEMKFLREDLIFSTHSEE-----------------------VYPRDIYAFGLIAWTGND 446
L++ FL +DL+ + + V P +A L+ +TG+
Sbjct: 451 LRQQGFLTDDLVSQEENGQQQKYLGVCRLPGPGWRHRRLDIIVVPYSEFACALLYFTGSA 510
Query: 447 VLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEP 506
NR +R LA++KG L + L A + + L TEK+VF LG P+ EP
Sbjct: 511 HFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKMGPGRVLPTPTEKDVFRLLGLPYREP 570
Query: 507 HERN 510
ER+
Sbjct: 571 AERD 574
>gi|301756144|ref|XP_002913915.1| PREDICTED: DNA polymerase lambda-like isoform 1 [Ailuropoda
melanoleuca]
Length = 575
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 160/546 (29%), Positives = 254/546 (46%), Gaps = 66/546 (12%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ ++++Q G + + VTH++ MD E L+ +
Sbjct: 41 LSSLRAHIVPSGIGRARAELFEKQIIQHGGQICAAQAPGVTHIVVDEGMDCERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTS--S 133
L + +++ WL SL L EK D G I +R L Q Q + S
Sbjct: 101 PQLPQ-GAQLVKSAWL--SLCLQEKRLVDTAGF-----GIWIPNRYLDQAQLSKADQDFS 152
Query: 134 DGESSHRKKIKSS----------------TEDVEHFQAESKGDVETNALSEAPNSPMSSE 177
+H + ++ E+ QA+ D ET+ E S E
Sbjct: 153 APPGAHEAVLMTALSPPRPPTRPVSPPWRIEEAPSTQAQPGYDDETSDGEETQVSAADLE 212
Query: 178 SL-TNTLSTA-------SASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGE 229
+L + ST S +P + + N +ITE L Y G+
Sbjct: 213 ALISGHYSTPLEEDGEPSPAPKGLDKWVCAQPSSQKAINHNPHITEKLEVLAKAYSVQGD 272
Query: 230 DRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDE 289
R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H E
Sbjct: 273 KWRALGYAKAINALKSFHKPVTSYQEAFSIPGIGKRMAEKIIEILESGHLRKLDHI--SE 330
Query: 290 KVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRH 349
V + LF +WG G TAQ Y++G RTL+D++ + SLT Q +GLK++DD RIPR
Sbjct: 331 SVPVLELFSNIWGAGTKTAQMWYQQGFRTLEDIRGQASLTTQQAIGLKHYDDFLERIPRE 390
Query: 350 EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKK 409
E ++E+ +++A + P ++ + GSYRRGKA+CGD+DV++ HPD +SH+G S +
Sbjct: 391 EATEIEQTVREAAQAFNPGLLCVACGSYRRGKATCGDVDVLLTHPDGRSHQGIFSLLLDS 450
Query: 410 LKEMKFLREDLIFSTHSEE-----------------------VYPRDIYAFGLIAWTGND 446
L+ FL +DL+ + + V P +A L+ +TG+
Sbjct: 451 LRRQGFLTDDLVSQEENGQQQKYLGVCQLPGPGRRHRRLDIIVVPYSEFACALLYFTGSA 510
Query: 447 VLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTS--LKFDTEKEVFDFLGFPWL 504
NR +R LA++KG L + L +T QG++ L TEK+VF LG P+
Sbjct: 511 HFNRSMRALAKTKGMSLSEHAL--STSVVRDTQGLKVGPGRVLPTPTEKDVFRLLGLPYR 568
Query: 505 EPHERN 510
EP ER+
Sbjct: 569 EPAERD 574
>gi|281352050|gb|EFB27634.1| hypothetical protein PANDA_001756 [Ailuropoda melanoleuca]
Length = 537
Score = 205 bits (521), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 160/546 (29%), Positives = 254/546 (46%), Gaps = 66/546 (12%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ ++++Q G + + VTH++ MD E L+ +
Sbjct: 3 LSSLRAHIVPSGIGRARAELFEKQIIQHGGQICAAQAPGVTHIVVDEGMDCERALRLLRL 62
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTS--S 133
L + +++ WL SL L EK D G I +R L Q Q + S
Sbjct: 63 PQLPQ-GAQLVKSAWL--SLCLQEKRLVDTAGF-----GIWIPNRYLDQAQLSKADQDFS 114
Query: 134 DGESSHRKKIKSS----------------TEDVEHFQAESKGDVETNALSEAPNSPMSSE 177
+H + ++ E+ QA+ D ET+ E S E
Sbjct: 115 APPGAHEAVLMTALSPPRPPTRPVSPPWRIEEAPSTQAQPGYDDETSDGEETQVSAADLE 174
Query: 178 SL-TNTLSTA-------SASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGE 229
+L + ST S +P + + N +ITE L Y G+
Sbjct: 175 ALISGHYSTPLEEDGEPSPAPKGLDKWVCAQPSSQKAINHNPHITEKLEVLAKAYSVQGD 234
Query: 230 DRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDE 289
R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H E
Sbjct: 235 KWRALGYAKAINALKSFHKPVTSYQEAFSIPGIGKRMAEKIIEILESGHLRKLDHI--SE 292
Query: 290 KVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRH 349
V + LF +WG G TAQ Y++G RTL+D++ + SLT Q +GLK++DD RIPR
Sbjct: 293 SVPVLELFSNIWGAGTKTAQMWYQQGFRTLEDIRGQASLTTQQAIGLKHYDDFLERIPRE 352
Query: 350 EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKK 409
E ++E+ +++A + P ++ + GSYRRGKA+CGD+DV++ HPD +SH+G S +
Sbjct: 353 EATEIEQTVREAAQAFNPGLLCVACGSYRRGKATCGDVDVLLTHPDGRSHQGIFSLLLDS 412
Query: 410 LKEMKFLREDLIFSTHSEE-----------------------VYPRDIYAFGLIAWTGND 446
L+ FL +DL+ + + V P +A L+ +TG+
Sbjct: 413 LRRQGFLTDDLVSQEENGQQQKYLGVCQLPGPGRRHRRLDIIVVPYSEFACALLYFTGSA 472
Query: 447 VLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTS--LKFDTEKEVFDFLGFPWL 504
NR +R LA++KG L + L +T QG++ L TEK+VF LG P+
Sbjct: 473 HFNRSMRALAKTKGMSLSEHAL--STSVVRDTQGLKVGPGRVLPTPTEKDVFRLLGLPYR 530
Query: 505 EPHERN 510
EP ER+
Sbjct: 531 EPAERD 536
>gi|443727490|gb|ELU14231.1| hypothetical protein CAPTEDRAFT_169992 [Capitella teleta]
Length = 556
Score = 204 bits (519), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 144/517 (27%), Positives = 248/517 (47%), Gaps = 53/517 (10%)
Query: 22 MRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLS-KKVTHVLAMD---LEALLQQVSKQH 77
++ +V G+ R+ I++++L + G + L+ ++THV+ D LL + Q+
Sbjct: 64 IKALIVPTGIGKARISIFKKQLEKYGGSFLSDLNDAELTHVIVDDKVEFARLLNILKVQN 123
Query: 78 LARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGES 137
++ ++ QWL SL+ D ++ A +S+ +T SD +
Sbjct: 124 ISE-DIEIVTTQWLSSSLK--------------DHTCKDTASYCISR----PSTKSDSKK 164
Query: 138 SHRKKIKS-STEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHH 196
S + S S +E A+ + ++ S + +E +H
Sbjct: 165 SEVEPCSSKSFNTIEKPAAQIICNDSSDYDSGSDRETGVAEERQGVTKNVPCGSWVCAHS 224
Query: 197 ITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQV 256
+P P+ NK+IT+ L Y + R+ Y KAI ++K P I + ++
Sbjct: 225 SGNPR-----PNFNKHITDKLEALAKTYENTNDRWRALGYAKAIMTLKKHPKAIATWEEA 279
Query: 257 KGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH 316
K LPG+G+ + D I EIV +G+L KL+ E+++ I+LF ++WG G TA+ +G
Sbjct: 280 KSLPGVGEKLADKIWEIVESGQLRKLDELTSQEEIQAINLFSDIWGAGATTARAWVAQGF 339
Query: 317 RTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGS 376
RTLDD++ + L Q++GL+Y++++ R+PR E ++E ++ KA +++ +I + GS
Sbjct: 340 RTLDDIRTKAHLNRHQKIGLQYYEELLDRMPRSEAAEIEAVVVKAAKDIDENMIAMACGS 399
Query: 377 YRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIF---STHSEE----- 428
+RRGKA+CGD+DV+I HPD KSHKG +K + L + FL +DL+ + H ++
Sbjct: 400 FRRGKATCGDVDVLITHPDGKSHKGVFTKILTSLHQTGFLTDDLVRQEDNGHQKKYLGVC 459
Query: 429 ---------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATY 473
V P +A + +TG+ NR +R LA G L + L
Sbjct: 460 LLPGEGRKHRRLDIIVVPYSEFACSKLYFTGSAHFNRSMRHLAGKMGMSLSEHSLNTGVT 519
Query: 474 GSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
G Q + L+ TE VF LG + P ER+
Sbjct: 520 RKNG-QKLNEGVPLQTPTEDSVFQHLGLKYRPPEERD 555
>gi|60594068|pdb|1XSN|A Chain A, Crystal Structure Of Human Dna Polymerase Lambda In
Complex With A One Nucleotide Dna Gap And Ddttp
gi|60594072|pdb|1XSP|A Chain A, Crystal Structure Of Human Dna Polymerase Lambda In
Complex With Nicked Dna And Pyrophosphate
gi|149243099|pdb|2PFN|A Chain A, Na In The Active Site Of Dna Polymerase Lambda
gi|149243103|pdb|2PFO|A Chain A, Dna Polymerase Lambda In Complex With Dna And Dupnpp
gi|149243107|pdb|2PFP|A Chain A, Dna Polymerase Lambda In Complex With Dna And Dctp
gi|149243111|pdb|2PFQ|A Chain A, Manganese Promotes Catalysis In A Dna Polymerase
Lambda-Dna Crystal
gi|256599813|pdb|3HW8|A Chain A, Ternary Complex Of Dna Polymerase Lambda Of A Two
Nucleotide Gapped Dna Substrate With A C In The Scrunch
Site
gi|256599817|pdb|3HWT|A Chain A, Ternary Complex Of Dna Polymerase Lambda Bound To A Two
Nucleotide Gapped Dna Substrate With A Scrunched Da
Length = 335
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 114/324 (35%), Positives = 173/324 (53%), Gaps = 25/324 (7%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N +ITE L Y G+ R+ Y KAI ++ + S + +PGIGK M +
Sbjct: 13 NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEK 72
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I EI+ +G L KL+H E V + LF +WG G TAQ Y++G R+L+D++++ SLT
Sbjct: 73 IIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLT 130
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
Q +GLK++ D R+PR E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV
Sbjct: 131 TQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDV 190
Query: 390 VIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE--------------------- 428
+I HPD +SH+G S+ + L++ FL +DL+ + +
Sbjct: 191 LITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLD 250
Query: 429 --VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTS 486
V P +A L+ +TG+ NR +R LA++KG L + L A + V
Sbjct: 251 IIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGAKVGPGRV 310
Query: 487 LKFDTEKEVFDFLGFPWLEPHERN 510
L TEK+VF LG P+ EP ER+
Sbjct: 311 LPTPTEKDVFRLLGLPYREPAERD 334
>gi|60594052|pdb|1XSL|A Chain A, Crystal Structure Of Human Dna Polymerase Lambda In
Complex With A One Nucleotide Dna Gap
gi|60594056|pdb|1XSL|E Chain E, Crystal Structure Of Human Dna Polymerase Lambda In
Complex With A One Nucleotide Dna Gap
gi|60594060|pdb|1XSL|I Chain I, Crystal Structure Of Human Dna Polymerase Lambda In
Complex With A One Nucleotide Dna Gap
gi|60594064|pdb|1XSL|M Chain M, Crystal Structure Of Human Dna Polymerase Lambda In
Complex With A One Nucleotide Dna Gap
gi|93278829|pdb|2BCQ|A Chain A, Dna Polymerase Lambda In Complex With A Dna Duplex
Containing An Unpaired Dtmp
gi|93278833|pdb|2BCR|A Chain A, Dna Polymerase Lambda In Complex With A Dna Duplex
Containing An Unpaired Damp
gi|93278837|pdb|2BCS|A Chain A, Dna Polymerase Lambda In Complex With A Dna Duplex
Containing An Unpaired Dcmp
gi|93278841|pdb|2BCU|A Chain A, Dna Polymerase Lambda In Complex With A Dna Duplex
Containing An Unpaired Damp And A T:t Mismatch
gi|93278845|pdb|2BCV|A Chain A, Dna Polymerase Lambda In Complex With Dttp And A Dna
Duplex Containing An Unpaired Dtmp
gi|114794130|pdb|2GWS|A Chain A, Crystal Structure Of Human Dna Polymerase Lambda With A GG
MISMATCH In The Primer Terminus
gi|114794131|pdb|2GWS|E Chain E, Crystal Structure Of Human Dna Polymerase Lambda With A GG
MISMATCH In The Primer Terminus
gi|114794132|pdb|2GWS|I Chain I, Crystal Structure Of Human Dna Polymerase Lambda With A GG
MISMATCH In The Primer Terminus
gi|114794133|pdb|2GWS|M Chain M, Crystal Structure Of Human Dna Polymerase Lambda With A GG
MISMATCH In The Primer Terminus
Length = 335
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 114/324 (35%), Positives = 173/324 (53%), Gaps = 25/324 (7%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N +ITE L Y G+ R+ Y KAI ++ + S + +PGIGK M +
Sbjct: 13 NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEK 72
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I EI+ +G L KL+H E V + LF +WG G TAQ Y++G R+L+D++++ SLT
Sbjct: 73 IIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLT 130
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
Q +GLK++ D R+PR E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV
Sbjct: 131 TQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDV 190
Query: 390 VIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE--------------------- 428
+I HPD +SH+G S+ + L++ FL +DL+ + +
Sbjct: 191 LITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLD 250
Query: 429 --VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTS 486
V P +A L+ +TG+ NR +R LA++KG L + L A + V
Sbjct: 251 IIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPGRV 310
Query: 487 LKFDTEKEVFDFLGFPWLEPHERN 510
L TEK+VF LG P+ EP ER+
Sbjct: 311 LPTPTEKDVFRLLGLPYREPAERD 334
>gi|46015602|pdb|1RZT|A Chain A, Crystal Structure Of Dna Polymerase Lambda Complexed With
A Two Nucleotide Gap Dna Molecule
gi|46015603|pdb|1RZT|E Chain E, Crystal Structure Of Dna Polymerase Lambda Complexed With
A Two Nucleotide Gap Dna Molecule
gi|46015604|pdb|1RZT|I Chain I, Crystal Structure Of Dna Polymerase Lambda Complexed With
A Two Nucleotide Gap Dna Molecule
gi|46015605|pdb|1RZT|M Chain M, Crystal Structure Of Dna Polymerase Lambda Complexed With
A Two Nucleotide Gap Dna Molecule
Length = 331
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 114/324 (35%), Positives = 173/324 (53%), Gaps = 25/324 (7%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N +ITE L Y G+ R+ Y KAI ++ + S + +PGIGK M +
Sbjct: 9 NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEK 68
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I EI+ +G L KL+H E V + LF +WG G TAQ Y++G R+L+D++++ SLT
Sbjct: 69 IIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLT 126
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
Q +GLK++ D R+PR E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV
Sbjct: 127 TQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDV 186
Query: 390 VIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE--------------------- 428
+I HPD +SH+G S+ + L++ FL +DL+ + +
Sbjct: 187 LITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLD 246
Query: 429 --VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTS 486
V P +A L+ +TG+ NR +R LA++KG L + L A + V
Sbjct: 247 IIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPGRV 306
Query: 487 LKFDTEKEVFDFLGFPWLEPHERN 510
L TEK+VF LG P+ EP ER+
Sbjct: 307 LPTPTEKDVFRLLGLPYREPAERD 330
>gi|295322047|pdb|3MDA|A Chain A, Dna Polymerase Lambda In Complex With Arac
gi|295322051|pdb|3MDC|A Chain A, Dna Polymerase Lambda In Complex With Dfdctp
Length = 325
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 114/324 (35%), Positives = 173/324 (53%), Gaps = 25/324 (7%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N +ITE L Y G+ R+ Y KAI ++ + S + +PGIGK M +
Sbjct: 3 NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEK 62
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I EI+ +G L KL+H E V + LF +WG G TAQ Y++G R+L+D++++ SLT
Sbjct: 63 IIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLT 120
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
Q +GLK++ D R+PR E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV
Sbjct: 121 TQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDV 180
Query: 390 VIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE--------------------- 428
+I HPD +SH+G S+ + L++ FL +DL+ + +
Sbjct: 181 LITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLD 240
Query: 429 --VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTS 486
V P +A L+ +TG+ NR +R LA++KG L + L A + V
Sbjct: 241 IIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPGRV 300
Query: 487 LKFDTEKEVFDFLGFPWLEPHERN 510
L TEK+VF LG P+ EP ER+
Sbjct: 301 LPTPTEKDVFRLLGLPYREPAERD 324
>gi|388325745|pdb|3UQ2|A Chain A, Crystal Structure Of The Post-Catalytic Product Complex Of
Polymerase Lambda With An Rcmp Inserted Opposite A
Templating G And Damp Inserted Opposite A Templating T
At The Primer Terminus.
gi|394986423|pdb|4FO6|A Chain A, Crystal Structure Of The Pre-Catalytic Ternary Complex Of
Polymerase Lambda With A Datp Analog Opposite A
Templating T And An Rcmp At The Primer Terminus
Length = 329
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 114/319 (35%), Positives = 171/319 (53%), Gaps = 20/319 (6%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N +ITE L Y G+ R+ Y KAI ++ + S + +PGIGK M +
Sbjct: 12 NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEK 71
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I EI+ +G L KL+H E V + LF +WG G TAQ Y++G R+L+D++++ SLT
Sbjct: 72 IIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLT 129
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
Q +GLK++ D R+PR E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV
Sbjct: 130 TQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDV 189
Query: 390 VIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE------------------VYP 431
+I HPD +SH+G S+ + L++ FL +DL+ V P
Sbjct: 190 LITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVKGETKYLGVCRLPGPGRRHRRLDIIVVP 249
Query: 432 RDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDT 491
+A L+ +TG+ NR +R LA++KG L + L A + V L T
Sbjct: 250 YSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGAKVGPGRVLPTPT 309
Query: 492 EKEVFDFLGFPWLEPHERN 510
EK+VF LG P+ EP ER+
Sbjct: 310 EKDVFRLLGLPYREPAERD 328
>gi|9910500|ref|NP_064416.1| DNA polymerase lambda [Mus musculus]
gi|20138052|sp|Q9QXE2.1|DPOLL_MOUSE RecName: Full=DNA polymerase lambda; Short=Pol Lambda; AltName:
Full=DNA polymerase kappa
gi|6746425|gb|AAF27553.1|AF176099_1 DNA polymerase lambda [Mus musculus]
gi|6688681|emb|CAB65241.1| DNA polymerase lambda [Mus musculus]
gi|13435834|gb|AAH04767.1| Polymerase (DNA directed), lambda [Mus musculus]
gi|148710011|gb|EDL41957.1| polymerase (DNA directed), lambda [Mus musculus]
Length = 573
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 145/550 (26%), Positives = 248/550 (45%), Gaps = 65/550 (11%)
Query: 14 DSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLA---MDLEALL 70
++ G + +R ++ G+ R +++ ++++ G V + VTH++ MD E L
Sbjct: 35 EARGWLSSLRAHIMPAGIGRARAELFEKQIIHHGGQVCSAQAPGVTHIVVDEDMDYERAL 94
Query: 71 QQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGN 130
+ + +++ WL L+ G + + + + R L + Q + +
Sbjct: 95 RLLRLP-QLPPGAQLVKSTWLSLCLQEGRLTDTEGFSLPM-------PKRSLDEPQPSKS 146
Query: 131 TSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTN-----TLST 185
++ + +T + + T + +SSE T+ +S+
Sbjct: 147 GQDASAPGTQRDLPRTTLSLSPPHTRAVSPPPTAEKPSRTQAQLSSEDETSDGEGPQVSS 206
Query: 186 ASASPDFSSHHITDPSLLYNP--------------------PDLNKNITEIFGKLINIYR 225
A + H+ T P P + N +ITE L Y
Sbjct: 207 ADLQALITGHYPTPPEEDGGPDPAPEALDKWVCAQPSSQKATNYNLHITEKLEVLAKAYS 266
Query: 226 ALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF 285
G+ R+ Y KAI ++ + S + +PGIGK M + + EI+ +G L KL+H
Sbjct: 267 VQGDKWRALGYAKAINALKSFHKPVSSYQEACSIPGIGKRMAEKVMEILESGHLRKLDHI 326
Query: 286 EKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTR 345
+ V + LF +WG G TAQ Y +G R L+DL++ SLT Q +GLK++DD R
Sbjct: 327 --SDSVPVLELFSNIWGAGTKTAQMWYHQGFRNLEDLQSLGSLTAQQAIGLKHYDDFLDR 384
Query: 346 IPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSK 405
+PR E ++E+ ++ + + P ++ + GSYRRGK +CGD+DV+I HPD +SH+G S
Sbjct: 385 MPREEAAEIEQTVRISAQAFNPGLLCVACGSYRRGKMTCGDVDVLITHPDGRSHRGIFSC 444
Query: 406 YVKKLKEMKFLREDLIFSTHSEE-----------------------VYPRDIYAFGLIAW 442
+ L++ FL +DL+ + + V P +A L+ +
Sbjct: 445 LLDSLRQQGFLTDDLVSQEENGQQQKYLGVCRLPGPGKRHRRLDIIVVPYCEFACALLYF 504
Query: 443 TGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTS--LKFDTEKEVFDFLG 500
TG+ NR +R LA++KG L + L A + QGV+ L TEK+VF LG
Sbjct: 505 TGSAHFNRSMRALAKTKGMSLSEHALSAAVVRN--SQGVKVGPGQVLPTPTEKDVFKHLG 562
Query: 501 FPWLEPHERN 510
P+ EP ER+
Sbjct: 563 LPYREPAERD 572
>gi|417402918|gb|JAA48289.1| Putative dna polymerase iv family x [Desmodus rotundus]
Length = 575
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 148/548 (27%), Positives = 246/548 (44%), Gaps = 62/548 (11%)
Query: 15 SNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQ 71
+ G + +R +V G+ R +++ +++VQ G + + VTH++ MD E L+
Sbjct: 37 ARGWLSSLRAHVVPTGIGRARAELFEKQIVQHGGQIHAVQAPGVTHIVVDDGMDCERALR 96
Query: 72 QVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQ----- 126
+ L +++ WL SL L E+ D + I DR L+Q Q
Sbjct: 97 LLRLPRLPP-GAQLVKSAWL--SLCLQERRLVDTAEFSI-----FIPDRCLAQPQLSKAD 148
Query: 127 -GNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLST 185
+ E+ R + + ++ ++ + SS+ +S
Sbjct: 149 QDSATPPGACEALLRTAFSPPPTPARPVSPPQRTEEAASSRAQPGSDDGSSDGEETWVSA 208
Query: 186 ASASPDFSSHHITDPS---------------LLYNPP-----DLNKNITEIFGKLINIYR 225
A S + P + P + N +ITE L Y
Sbjct: 209 ADLEALISGRYPIPPEGDGEPCPAPEGLGKWVCAQPSSQKVTNHNAHITEKLEVLAKAYS 268
Query: 226 ALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF 285
G+ R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H
Sbjct: 269 VQGDKWRALGYTKAINALKSFHKPVASYQEACSIPGIGKRMAEKIVEILESGHLRKLDHI 328
Query: 286 EKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTR 345
+ V + LF +WG G TAQ Y +G RTL+D++++ SLT Q +GLK+++D R
Sbjct: 329 --SDSVPILELFSNIWGAGTKTAQMWYHQGFRTLEDIRSKASLTTQQAIGLKHYNDFLER 386
Query: 346 IPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSK 405
IPR E ++E+ ++ + + + P ++ + GSYRRGK +CGD+DV++ HPD SH+G S+
Sbjct: 387 IPREEATEIEQTVRGSAQGLNPGLLCVACGSYRRGKVTCGDVDVLLTHPDGHSHQGIFSR 446
Query: 406 YVKKLKEMKFLREDLIFSTHSEE-----------------------VYPRDIYAFGLIAW 442
+ L++ FL +DL+ + + P +A L+ +
Sbjct: 447 LLDSLRQQGFLTDDLVSQEENGPQQKYLGVCRLPGPGRRHRRLDIIIVPYSEFACALLYF 506
Query: 443 TGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFP 502
TG+ NR +R LA++KG L + L A V + L TEK+VF LG P
Sbjct: 507 TGSAYFNRSMRALAKTKGMSLSERALSTAVVRDTRGLKVGSGRVLPTPTEKDVFRLLGLP 566
Query: 503 WLEPHERN 510
+ EP ER+
Sbjct: 567 YREPAERD 574
>gi|194709142|pdb|3C5G|A Chain A, Structure Of A Ternary Complex Of The R517k Pol Lambda
Mutant
gi|194709146|pdb|3C5G|B Chain B, Structure Of A Ternary Complex Of The R517k Pol Lambda
Mutant
Length = 335
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 113/324 (34%), Positives = 173/324 (53%), Gaps = 25/324 (7%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N +ITE L Y G+ R+ Y KAI ++ + S + +PGIGK M +
Sbjct: 13 NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEK 72
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I EI+ +G L KL+H E V + LF +WG G TAQ Y++G R+L+D++++ SLT
Sbjct: 73 IIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLT 130
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
Q +GLK++ D R+PR E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV
Sbjct: 131 TQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDV 190
Query: 390 VIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE--------------------- 428
+I HPD +SH+G S+ + L++ FL +DL+ + +
Sbjct: 191 LITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLD 250
Query: 429 --VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTS 486
V P +A L+ +TG+ NR ++ LA++KG L + L A + V
Sbjct: 251 IIVVPYSEFACALLYFTGSAHFNRSMKALAKTKGMSLSEHALSTAVVRNTHGCKVGPGRV 310
Query: 487 LKFDTEKEVFDFLGFPWLEPHERN 510
L TEK+VF LG P+ EP ER+
Sbjct: 311 LPTPTEKDVFRLLGLPYREPAERD 334
>gi|256599821|pdb|3HX0|A Chain A, Ternary Complex Of L277a, H511a, R514 Mutant Pol Lambda
Bound To A 2 Nucleotide Gapped Dna Substrate With A
Scrunched Da
gi|256599825|pdb|3HX0|F Chain F, Ternary Complex Of L277a, H511a, R514 Mutant Pol Lambda
Bound To A 2 Nucleotide Gapped Dna Substrate With A
Scrunched Da
gi|256599829|pdb|3HX0|K Chain K, Ternary Complex Of L277a, H511a, R514 Mutant Pol Lambda
Bound To A 2 Nucleotide Gapped Dna Substrate With A
Scrunched Da
gi|256599833|pdb|3HX0|P Chain P, Ternary Complex Of L277a, H511a, R514 Mutant Pol Lambda
Bound To A 2 Nucleotide Gapped Dna Substrate With A
Scrunched Da
Length = 335
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 113/324 (34%), Positives = 172/324 (53%), Gaps = 25/324 (7%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N +ITE L Y G+ R+ Y KAI ++ + S + +PGIGK M +
Sbjct: 13 NLHITEKLEVLAKAYSVQGDKWRAAGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEK 72
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I EI+ +G L KL+H E V + LF +WG G TAQ Y++G R+L+D++++ SLT
Sbjct: 73 IIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLT 130
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
Q +GLK++ D R+PR E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV
Sbjct: 131 TQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDV 190
Query: 390 VIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE--------------------- 428
+I HPD +SH+G S+ + L++ FL +DL+ + +
Sbjct: 191 LITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLD 250
Query: 429 --VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTS 486
V P +A L+ +TG+ N +R LA++KG L + L A + V
Sbjct: 251 IIVVPYSEFACALLYFTGSAAFNASMRALAKTKGMSLSEHALSTAVVRNTHGAKVGPGRV 310
Query: 487 LKFDTEKEVFDFLGFPWLEPHERN 510
L TEK+VF LG P+ EP ER+
Sbjct: 311 LPTPTEKDVFRLLGLPYREPAERD 334
>gi|296278520|pdb|3MGH|A Chain A, Binary Complex Of A Dna Polymerase Lambda Loop Mutant
gi|296278524|pdb|3MGH|C Chain C, Binary Complex Of A Dna Polymerase Lambda Loop Mutant
gi|296278528|pdb|3MGI|A Chain A, Ternary Complex Of A Dna Polymerase Lambda Loop Mutant
gi|320089902|pdb|3PML|A Chain A, Crystal Structure Of A Polymerase Lambda Variant With A
Dgtp Analog Opposite A Templating T
gi|320089903|pdb|3PML|B Chain B, Crystal Structure Of A Polymerase Lambda Variant With A
Dgtp Analog Opposite A Templating T
gi|321159982|pdb|3PMN|A Chain A, Ternary Crystal Structure Of Polymerase Lambda Variant
With A Gt Mispair At The Primer Terminus With Mn2+ In
The Active Site
gi|321159986|pdb|3PNC|A Chain A, Ternary Crystal Structure Of A Polymerase Lambda Variant
With A Gt Mispair At The Primer Terminus And Sodium At
Catalytic Metal Site
gi|388325731|pdb|3UPQ|A Chain A, Crystal Structure Of The Pre-Catalytic Ternary Complex Of
Polymerase Lambda With An Ratp Analog Opposite A
Templating T.
gi|388325735|pdb|3UQ0|A Chain A, Crystal Structure Of The Post-Catalytic Product Complex Of
Polymerase Lambda With An Ramp At The Primer Terminus
Length = 329
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 114/319 (35%), Positives = 171/319 (53%), Gaps = 20/319 (6%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N +ITE L Y G+ R+ Y KAI ++ + S + +PGIGK M +
Sbjct: 12 NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEK 71
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I EI+ +G L KL+H E V + LF +WG G TAQ Y++G R+L+D++++ SLT
Sbjct: 72 IIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLT 129
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
Q +GLK++ D R+PR E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV
Sbjct: 130 TQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDV 189
Query: 390 VIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE------------------VYP 431
+I HPD +SH+G S+ + L++ FL +DL+ V P
Sbjct: 190 LITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVKGETKYLGVCRLPGPGRRHRRLDIIVVP 249
Query: 432 RDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDT 491
+A L+ +TG+ NR +R LA++KG L + L A + V L T
Sbjct: 250 YSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPGRVLPTPT 309
Query: 492 EKEVFDFLGFPWLEPHERN 510
EK+VF LG P+ EP ER+
Sbjct: 310 EKDVFRLLGLPYREPAERD 328
>gi|47220317|emb|CAG03351.1| unnamed protein product [Tetraodon nigroviridis]
Length = 521
Score = 201 bits (511), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 119/340 (35%), Positives = 182/340 (53%), Gaps = 45/340 (13%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAI--------PV----IEKLPFKIESADQ 255
+ NK+IT+ L Y G+ R+ SY KA+ PV + + + A Q
Sbjct: 189 NFNKHITDKLEVLAKAYTHQGDKWRALSYSKAVNALKSYHKPVTSYQVSAISTNYQEACQ 248
Query: 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKG 315
+ PGIGKSM D I EI+ +G L KL+H E V + LF +WG G TAQ Y++G
Sbjct: 249 I---PGIGKSMADKIDEIMESGHLRKLDHI--GEAVPVLELFSNIWGAGAKTAQLWYQQG 303
Query: 316 HRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGG 375
RTL+D++ + L+ +Q++GLK+++D R+PR E +E++++ A V P ++ + G
Sbjct: 304 FRTLEDIRTKAHLSSTQKIGLKHYEDFLDRMPRGEAAAIEKVVKDAALAVDPHLVAMACG 363
Query: 376 SYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE------- 428
SYRRGKA+CGD+DV+I HPD KSH+G +K ++ L + FL +DL+ +H E
Sbjct: 364 SYRRGKATCGDVDVLISHPDGKSHRGVFTKVLQSLHDSGFLTDDLV--SHEENGEQKKYM 421
Query: 429 ------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 470
V P + A L+ +TG+ NR +R LA++K L + L
Sbjct: 422 GVCRLPGPGHRHRRLDIIVVPYNELACALMYFTGSAHFNRSMRALAKTKSMSLSEHSLNE 481
Query: 471 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
G + V L TE++VF+ LG P+ +PHER+
Sbjct: 482 NVVREGSVK-VFGGAPLATPTERDVFNLLGIPYRQPHERD 520
>gi|197725066|pdb|3C5F|A Chain A, Structure Of A Binary Complex Of The R517a Pol Lambda
Mutant
gi|197725070|pdb|3C5F|B Chain B, Structure Of A Binary Complex Of The R517a Pol Lambda
Mutant
Length = 335
Score = 201 bits (511), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 113/324 (34%), Positives = 172/324 (53%), Gaps = 25/324 (7%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N +ITE L Y G+ R+ Y KAI ++ + S + +PGIGK M +
Sbjct: 13 NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEK 72
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I EI+ +G L KL+H E V + LF +WG G TAQ Y++G R+L+D++++ SLT
Sbjct: 73 IIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLT 130
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
Q +GLK++ D R+PR E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV
Sbjct: 131 TQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDV 190
Query: 390 VIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE--------------------- 428
+I HPD +SH+G S+ + L++ FL +DL+ + +
Sbjct: 191 LITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLD 250
Query: 429 --VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTS 486
V P +A L+ +TG+ NR + LA++KG L + L A + V
Sbjct: 251 IIVVPYSEFACALLYFTGSAHFNRSMAALAKTKGMSLSEHALSTAVVRNTHGCKVGPGRV 310
Query: 487 LKFDTEKEVFDFLGFPWLEPHERN 510
L TEK+VF LG P+ EP ER+
Sbjct: 311 LPTPTEKDVFRLLGLPYREPAERD 334
>gi|426252965|ref|XP_004020173.1| PREDICTED: DNA polymerase lambda isoform 2 [Ovis aries]
Length = 483
Score = 195 bits (495), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 106/285 (37%), Positives = 157/285 (55%), Gaps = 29/285 (10%)
Query: 251 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 310
E + G+PGIGK M + I EI+ +G L KL+H E V + LF +WG G TAQ
Sbjct: 202 EEPQEAFGIPGIGKRMAEKIVEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQM 259
Query: 311 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 370
Y +G R L+D++N LT Q +GLK++DD R+PR E ++E+ +++A + + P ++
Sbjct: 260 WYHQGFRCLEDIRNHACLTTQQAIGLKHYDDFLDRMPREEAAEIEQTVREAAQALNPGLL 319
Query: 371 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE-- 428
+ GSYRRGKA+CGD+DV++ HPD +SH+G S+ + L++ FL +DL+ +H E
Sbjct: 320 CVACGSYRRGKATCGDMDVLLTHPDGRSHQGVFSRLLDSLRQQGFLTDDLV--SHEENGQ 377
Query: 429 -----------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDD 465
V P A L+ +TG+ NR +R LA++KG L +
Sbjct: 378 QQKYLGVCQLPGPGRRHRRLDIIVVPYSELACALLYFTGSAHFNRSMRALAKTKGMSLSE 437
Query: 466 TGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
L A S V + L TEK+VF FLG P+ EP ER+
Sbjct: 438 HALSTAVVRSAQGLKVGSGQVLPTPTEKDVFRFLGLPYREPAERD 482
>gi|405955500|gb|EKC22593.1| DNA polymerase lambda [Crassostrea gigas]
Length = 208
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 88/193 (45%), Positives = 131/193 (67%)
Query: 220 LINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKL 279
++ Y++ + R+F Y KAI V+ K P +I S ++ + LPG+G + D I EI +G+L
Sbjct: 1 MVKKYKSTSDQWRAFGYQKAIQVLRKHPTQISSWEEARALPGVGTRLADKIWEIAESGEL 60
Query: 280 SKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYF 339
KL F D+ ++ I LF VWG G TA++ +++G RTLDDL+ + LTH Q++GLK++
Sbjct: 61 RKLNEFNADKDIKVIELFTNVWGAGAHTARQWFQQGFRTLDDLRTKAKLTHQQKIGLKHY 120
Query: 340 DDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSH 399
+DI R+PR E +E+++++A E + P VI C GSYRRGK +CGD+DV++ HPD KSH
Sbjct: 121 EDILDRMPRTEAAAIEQVVREAAEFLAPGVIAQCCGSYRRGKPTCGDVDVLLTHPDGKSH 180
Query: 400 KGFLSKYVKKLKE 412
KG SK + KLKE
Sbjct: 181 KGLFSKLLAKLKE 193
>gi|194205745|ref|XP_001499852.2| PREDICTED: DNA polymerase lambda, partial [Equus caballus]
Length = 526
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 146/512 (28%), Positives = 234/512 (45%), Gaps = 98/512 (19%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R ++ G+ R +++ ++++Q G + + VTH++ MD E L+ +
Sbjct: 41 LSSLRAHVLPTGIGRARAEVFEKQIIQHGGQICPAQAAGVTHIVVDEGMDYERALRILRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEK----------------------------------V 101
L +++ WL SL L E+
Sbjct: 101 PQLPP-GAQLVKSAWL--SLCLQERRLVDTAGFSIFIPNRCLDQTQLSKADQDSSTPPGA 157
Query: 102 SEDLYRIKLDPEGENI--------ADRVLS-QIQ-GNGNTSSDGESSHRKKIKSSTEDVE 151
E L R L P A+ LS Q+Q G + SDGE + + S D+E
Sbjct: 158 REPLLRTALSPPPSPARPVSPPRRAEEALSTQVQPGFDDEISDGEET-----QVSAADLE 212
Query: 152 HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNK 211
A G T L E P + + A S +++H N+
Sbjct: 213 ---ALISGHYPT--LLEEDGEPCPAPKGLDKWVCAQPSSQKATNH-------------NR 254
Query: 212 NITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQ 271
+ITE L Y G+ R+ Y KAI ++ + S + G+PGIGK M + I
Sbjct: 255 HITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACGIPGIGKRMAEKII 314
Query: 272 EIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHS 331
EI+ +G L KL+H E V + LF +WG G TAQ Y +G R+L+D++N+ SLT
Sbjct: 315 EILESGHLRKLDHI--SESVPILELFSNIWGAGTKTAQMWYHQGFRSLEDIRNQASLTTQ 372
Query: 332 QRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVI 391
Q +GLK+++D RIPR E ++E+ +QK+ + P ++ + GSYRRGKA+CGD+DV++
Sbjct: 373 QAIGLKHYNDFLERIPREEATEIEQTVQKSAQAFNPGLLCVACGSYRRGKATCGDVDVLL 432
Query: 392 MHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE----------------------- 428
HPD +SH+G LS+ + L++ FL +DL+ + +
Sbjct: 433 THPDGRSHQGILSRLLDSLRQQGFLTDDLVSQEENGQQQKYLGVCQLPGPGRRHRRLDII 492
Query: 429 VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKG 460
V P +A L+ +TG+ NR +R LA++KG
Sbjct: 493 VVPYSEFACALLYFTGSAHFNRSMRALAKTKG 524
>gi|157830425|pdb|1BPE|A Chain A, Crystal Structure Of Rat Dna Polymerase Beta; Evidence For
A Common Polymerase Mechanism
Length = 335
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 115/330 (34%), Positives = 188/330 (56%), Gaps = 34/330 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRRDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ PE I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL------------IFSTHSEEVY 430
+DV++ HP+ S L + V++L++++F+ + L + S + E Y
Sbjct: 191 MDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFITDTLSKGETKFMGVCQLPSENDENEY 250
Query: 431 ----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P G G
Sbjct: 251 PHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTG 305
Query: 481 VRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
V A L D+E+++FD++ + + EP +R+
Sbjct: 306 V-AGEPLPVDSEQDIFDYIQWRYREPKDRS 334
>gi|427930612|pdb|3UXO|A Chain A, Crystal Structure Of Rat Dna Polymerase Beta Mutator I260q
Apoenzyme
gi|427930613|pdb|3UXO|B Chain B, Crystal Structure Of Rat Dna Polymerase Beta Mutator I260q
Apoenzyme
gi|427930616|pdb|3UXP|A Chain A, Co-Crystal Structure Of Rat Dna Polymerase Beta Mutator
I260q: Enzyme- Dna-Ddttp
gi|427930617|pdb|3UXP|B Chain B, Co-Crystal Structure Of Rat Dna Polymerase Beta Mutator
I260q: Enzyme- Dna-Ddttp
Length = 335
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 115/330 (34%), Positives = 188/330 (56%), Gaps = 34/330 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ PE I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL------------IFSTHSEEVY 430
+DV++ HP+ S L + V++L++++F+ + L + S + E Y
Sbjct: 191 MDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFITDTLSKGETKFMGVCQLPSENDENEY 250
Query: 431 ----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P G G
Sbjct: 251 PHRRIDIRLQPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTG 305
Query: 481 VRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
V A L D+E+++FD++ + + EP +R+
Sbjct: 306 V-AGEPLPVDSEQDIFDYIQWRYREPKDRS 334
>gi|442570357|pdb|3V7K|A Chain A, Co-crystal Structure Of K72e Variant Of Rat Polymerase
Beta: Enzyme- Dna Binary Complex
gi|442570360|pdb|3V7L|A Chain A, Apo Structure Of Rat Dna Polymerase Beta K72e Variant
Length = 340
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 115/330 (34%), Positives = 188/330 (56%), Gaps = 34/330 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 16 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 75
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 76 EEIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 135
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ PE I GS+RRG S GD
Sbjct: 136 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGD 195
Query: 387 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL------------IFSTHSEEVY 430
+DV++ HP+ S L + V++L++++F+ + L + S + E Y
Sbjct: 196 MDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFITDTLSKGETKFMGVCQLPSENDENEY 255
Query: 431 ----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P G G
Sbjct: 256 PHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTG 310
Query: 481 VRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
V A L D+E+++FD++ + + EP +R+
Sbjct: 311 V-AGEPLPVDSEQDIFDYIQWRYREPKDRS 339
>gi|148747154|ref|NP_058837.2| DNA polymerase beta [Rattus norvegicus]
gi|585064|sp|P06766.4|DPOLB_RAT RecName: Full=DNA polymerase beta
gi|640121|pdb|2BPF|A Chain A, Structures Of Ternary Complexes Of Rat Dna Polymerase
Beta, A Dna Template-Primer, And Ddctp
gi|640124|pdb|2BPG|A Chain A, Structures Of Ternary Complexes Of Rat Dna Polymerase
Beta, A Dna Template-Primer, And Ddctp
gi|640127|pdb|2BPG|B Chain B, Structures Of Ternary Complexes Of Rat Dna Polymerase
Beta, A Dna Template-Primer, And Ddctp
gi|14277831|pdb|1HUO|A Chain A, Crystal Structure Of Dna Polymerase Beta Complexed With
Dna And Cr-Tmppcp
gi|14277832|pdb|1HUO|B Chain B, Crystal Structure Of Dna Polymerase Beta Complexed With
Dna And Cr-Tmppcp
gi|14277837|pdb|1HUZ|A Chain A, Crystal Structure Of Dna Polymerase Complexed With Dna And
Cr-Pcp
gi|14277838|pdb|1HUZ|B Chain B, Crystal Structure Of Dna Polymerase Complexed With Dna And
Cr-Pcp
gi|157830424|pdb|1BPD|A Chain A, Crystal Structure Of Rat Dna Polymerase Beta: Evidence For
A Common Polymerase Mechanism
gi|427930609|pdb|3UXN|A Chain A, Crystal Structure Of Rat Dna Polymerase Beta, Wild Type
Apoenzyme
gi|427930610|pdb|3UXN|B Chain B, Crystal Structure Of Rat Dna Polymerase Beta, Wild Type
Apoenzyme
gi|71051051|gb|AAH98668.1| Polymerase (DNA directed), beta [Rattus norvegicus]
gi|149057766|gb|EDM09009.1| rCG43201 [Rattus norvegicus]
Length = 335
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 115/330 (34%), Positives = 188/330 (56%), Gaps = 34/330 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ PE I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL------------IFSTHSEEVY 430
+DV++ HP+ S L + V++L++++F+ + L + S + E Y
Sbjct: 191 MDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFITDTLSKGETKFMGVCQLPSENDENEY 250
Query: 431 ----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P G G
Sbjct: 251 PHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTG 305
Query: 481 VRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
V A L D+E+++FD++ + + EP +R+
Sbjct: 306 V-AGEPLPVDSEQDIFDYIQWRYREPKDRS 334
>gi|442570354|pdb|3V7J|A Chain A, Co-crystal Structure Of Wild Type Rat Polymerase Beta:
Enzyme-dna Binary Complex
Length = 340
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 115/330 (34%), Positives = 188/330 (56%), Gaps = 34/330 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 16 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 75
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 76 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 135
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ PE I GS+RRG S GD
Sbjct: 136 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGD 195
Query: 387 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL------------IFSTHSEEVY 430
+DV++ HP+ S L + V++L++++F+ + L + S + E Y
Sbjct: 196 MDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFITDTLSKGETKFMGVCQLPSENDENEY 255
Query: 431 ----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P G G
Sbjct: 256 PHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTG 310
Query: 481 VRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
V A L D+E+++FD++ + + EP +R+
Sbjct: 311 V-AGEPLPVDSEQDIFDYIQWRYREPKDRS 339
>gi|73998288|ref|XP_861980.1| PREDICTED: DNA polymerase lambda isoform 3 [Canis lupus familiaris]
Length = 484
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 105/285 (36%), Positives = 161/285 (56%), Gaps = 29/285 (10%)
Query: 251 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 310
E + G+PGIGK M + I EI+ +G L KL+H E V + LF +WG G TAQ
Sbjct: 203 EETQEAFGIPGIGKRMAEKIVEILESGHLRKLDHI--SESVPILELFSNIWGAGTKTAQM 260
Query: 311 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 370
Y++G+RTL+D++N+ SLT Q +GLK++DD RIPR E ++E+ ++K+ + P ++
Sbjct: 261 WYQQGYRTLEDIRNQASLTTQQAIGLKHYDDFLERIPREEATEIEQTVRKSAQAFNPGLL 320
Query: 371 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE-- 428
+ GSYRRGKA+CGD+DV++ HPD +SH+G S+ + L+ FL +DL+ + +
Sbjct: 321 CVACGSYRRGKATCGDVDVLLTHPDGQSHQGIFSRLLDSLRRQGFLTDDLVSQEENGQQQ 380
Query: 429 ---------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTG 467
+ P +A L+ +TG+ NR +R LA++KG L +
Sbjct: 381 KYLGVCRLPGPGRRHRRLDIIIVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHA 440
Query: 468 LFPATYGSGGKQGVRARTS--LKFDTEKEVFDFLGFPWLEPHERN 510
L +T QG++ L TEK+VF LG P+ EP ER+
Sbjct: 441 L--STSVVRDTQGLKVGPGRVLPTPTEKDVFRLLGLPYREPVERD 483
>gi|444731046|gb|ELW71413.1| DNA polymerase beta [Tupaia chinensis]
Length = 335
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 116/330 (35%), Positives = 185/330 (56%), Gaps = 34/330 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K E+G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKFVEEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL------------IFSTHSEEVY 430
+DV++ HP S L + V++L+++ F+ + L + S + E+ Y
Sbjct: 191 MDVLLTHPSFTSESAKQPKLLHRVVEQLQKVCFITDTLSKGETKFMGVCQLPSKNDEKEY 250
Query: 431 ----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P G G
Sbjct: 251 PHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPV-----GVTG 305
Query: 481 VRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
V A L D+EK++FD++ + + EP +R+
Sbjct: 306 V-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|393715248|pdb|3V72|A Chain A, Crystal Structure Of Rat Dna Polymerase Beta Mutator
E295k: Enzyme- Dsdna
Length = 335
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 115/330 (34%), Positives = 187/330 (56%), Gaps = 34/330 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ PE I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL------------IFSTHSEEVY 430
+DV++ HP+ S L + V++L++++F+ + L + S + E Y
Sbjct: 191 MDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFITDTLSKGETKFMGVCQLPSENDENEY 250
Query: 431 ----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
P+D Y G++ +TG+D+ N+ +R A KG+ ++ + P G G
Sbjct: 251 PHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINKYTIRPL-----GVTG 305
Query: 481 VRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
V A L D+E+++FD++ + + EP +R+
Sbjct: 306 V-AGEPLPVDSEQDIFDYIQWRYREPKDRS 334
>gi|77736473|ref|NP_001029936.1| DNA polymerase beta [Bos taurus]
gi|109893767|sp|Q27958.3|DPOLB_BOVIN RecName: Full=DNA polymerase beta
gi|73587414|gb|AAI03230.1| Polymerase (DNA directed), beta [Bos taurus]
gi|296472338|tpg|DAA14453.1| TPA: DNA polymerase beta [Bos taurus]
gi|440901046|gb|ELR52049.1| DNA polymerase beta [Bos grunniens mutus]
Length = 335
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 115/330 (34%), Positives = 186/330 (56%), Gaps = 34/330 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLSEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL------------IFSTHSEEVY 430
+DV++ HP S L + V++L++++F+ + L + S + E+ Y
Sbjct: 191 MDVLLTHPSFTSESAKQPKLLHRVVEQLQKVRFITDTLSKGETKFMGVCQLPSKNDEKEY 250
Query: 431 ----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P G G
Sbjct: 251 PHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTG 305
Query: 481 VRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
V A L D+EK++FD++ + + EP +R+
Sbjct: 306 V-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|403342628|gb|EJY70640.1| Helix-hairpin-helix motif family protein [Oxytricha trifallax]
Length = 659
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 144/497 (28%), Positives = 220/497 (44%), Gaps = 91/497 (18%)
Query: 99 EKVSEDLYRIKLDPEGENIADRVLSQIQG---------------NGNTSSDGE------- 136
E++ +D+YR+K +G+N RV ++ NGN S + E
Sbjct: 170 EEIIDDIYRMKFQKDGKNSQKRVFDELSKSSSNILHKNETKSHLNGNQSQENEDENFGIN 229
Query: 137 ----SSHRKKIKSSTEDVE----------------------------HFQAESKGDV--E 162
SSHR +D E H A S+G E
Sbjct: 230 LHEESSHRSLRSKFYKDGEECFSEDSYLHSWKPEYIANRENYWDKKKHMFACSRGSTLKE 289
Query: 163 TNALSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLIN 222
+ + +S N S + +S + D P +N I + KL
Sbjct: 290 NQIIEDGQIKELSDVKQENL----SQDANLASQEMIDTQTTKKKP-MNDEIIKQLEKLYK 344
Query: 223 IYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKL 282
Y A + R Y + + + I S +Q++ +P +G + +QE++ G + +
Sbjct: 345 YYEAQDDKGRMHGYRRGLTFLRSYKDPIYSVEQLESVPYLGNGILKKVQELIEEGSIKRF 404
Query: 283 EHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NEDSLTHSQRLGLKYFDD 341
E DE V L VWG+GP AQKLY++G R+++DL+ N+ LT Q++GLKY++D
Sbjct: 405 EFLSHDESVVVTELLEGVWGVGPKLAQKLYKQGIRSIEDLRQNQHLLTEMQKIGLKYYED 464
Query: 342 IKTRIPRHEVEQMERLLQKAGEEVLPE----VIILCGGSYRRGKASCGDLDVVIMHPDRK 397
IK RIPRHEV QM L+++ ++P + + GSYRRGK SCGD+D++I D
Sbjct: 465 IKQRIPRHEVTQMLELIRQTAFGLIPNGEKLLKVDACGSYRRGKQSCGDIDILITKVDGS 524
Query: 398 SHKGFLSKYVKKLKEMKFLRE-----------------------DLIFSTHSEEVYPRDI 434
S GF+ V +L++ FL+E DL F + YP
Sbjct: 525 SIHGFVKLLVLELEKQGFLKERLGGLRFSHIGSEGYMGMCQLRPDLPFRRIDIKAYPLSQ 584
Query: 435 YAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKE 494
Y F + +TG+ NR +RL A+ KGY L D GL P G K V S+ +TE++
Sbjct: 585 YGFAQLYFTGSGNFNRSMRLFAQKKGYSLSDYGLTPVIRVKGEK--VAEFESVPCETEED 642
Query: 495 VFDFLGFPWLEPHERNL 511
VF L + P+ER++
Sbjct: 643 VFKALNLDYKPPYERDI 659
>gi|296222127|ref|XP_002757050.1| PREDICTED: DNA polymerase beta [Callithrix jacchus]
gi|403303648|ref|XP_003942437.1| PREDICTED: DNA polymerase beta [Saimiri boliviensis boliviensis]
Length = 335
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 115/330 (34%), Positives = 185/330 (56%), Gaps = 34/330 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P+KI+S + K LPG+G +
Sbjct: 11 LNAGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPYKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL------------IFSTHSEEVY 430
+DV++ HP S L + V++L+++ F+ + L + S + E+ Y
Sbjct: 191 MDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKEY 250
Query: 431 ----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P G G
Sbjct: 251 PHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAYALEKGFTINEYTIRPL-----GVTG 305
Query: 481 VRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
V A L D+EK++FD++ + + EP +R+
Sbjct: 306 V-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|354482350|ref|XP_003503361.1| PREDICTED: DNA polymerase beta [Cricetulus griseus]
gi|344238920|gb|EGV95023.1| DNA polymerase beta [Cricetulus griseus]
Length = 335
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 114/330 (34%), Positives = 188/330 (56%), Gaps = 34/330 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN +IT++ +L N + + + + +Y KA VI K P KI+S ++ K LPG+G +
Sbjct: 11 LNSDITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGEEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLSEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL------------IFSTHSEEVY 430
+DV++ HP+ S L + V++L+++ F+ + L + S + E+ Y
Sbjct: 191 MDVLLTHPNFTSESNKQPKLLHRVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKEY 250
Query: 431 ----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P G G
Sbjct: 251 PHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYSIRPL-----GITG 305
Query: 481 VRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
V A L D+E+++FD++ + + EP +R+
Sbjct: 306 V-AGEPLPVDSEQDIFDYIQWRYREPKDRS 334
>gi|383872891|ref|NP_001244632.1| DNA polymerase beta [Macaca mulatta]
gi|355697903|gb|EHH28451.1| DNA polymerase beta [Macaca mulatta]
gi|355779661|gb|EHH64137.1| DNA polymerase beta [Macaca fascicularis]
gi|380788011|gb|AFE65881.1| DNA polymerase beta [Macaca mulatta]
gi|383419305|gb|AFH32866.1| DNA polymerase beta [Macaca mulatta]
gi|384947768|gb|AFI37489.1| DNA polymerase beta [Macaca mulatta]
Length = 335
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 115/330 (34%), Positives = 186/330 (56%), Gaps = 34/330 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P+KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPYKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL------------IFSTHSEEVY 430
+DV++ HP S L + V++L++++F+ + L + S + E+ Y
Sbjct: 191 MDVLLTHPSFTSESTKQPKLLHQVVEQLQKVRFITDTLSKGETKFMGVCQLPSKNDEKEY 250
Query: 431 ----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P G G
Sbjct: 251 PHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTG 305
Query: 481 VRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
V A L D+EK++FD++ + + EP +R+
Sbjct: 306 V-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|12834033|dbj|BAB22759.1| unnamed protein product [Mus musculus]
Length = 312
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 108/312 (34%), Positives = 166/312 (53%), Gaps = 29/312 (9%)
Query: 224 YRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLE 283
Y G+ R+ Y KAI ++ + S + +PGIGK M + + EI+ +G L KL+
Sbjct: 4 YSVQGDKWRALGYAKAINALKSFHKPVSSYQEACSIPGIGKRMAEKVMEILESGHLRKLD 63
Query: 284 HFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIK 343
H + V + LF +WG G TAQ Y +G R L+DL++ SLT Q +GLK++DD
Sbjct: 64 HI--SDSVPVLELFSNIWGAGTKTAQMWYHQGFRNLEDLQSLGSLTAQQAIGLKHYDDFL 121
Query: 344 TRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFL 403
R+PR E ++E+ ++ + + P ++ + GSYRRGK +CGD+DV+I HPD +SH+G
Sbjct: 122 DRMPREEAAEIEQTVRISAQAFNPGLLCVACGSYRRGKMTCGDVDVLITHPDGRSHRGIF 181
Query: 404 SKYVKKLKEMKFLREDLIFSTHSEE-----------------------VYPRDIYAFGLI 440
S + L++ FL +DL+ + + V P +A L+
Sbjct: 182 SCLLDSLRQQGFLTDDLVSQEENGQQQKYLGVCRLPGPGKRHRRLDIIVVPYCEFACALL 241
Query: 441 AWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTS--LKFDTEKEVFDF 498
+TG+ NR +R LA++KG L + L A + QGV+ L TEK+VF
Sbjct: 242 YFTGSAHFNRSMRALAKTKGMSLSEHALSAAVVRN--SQGVKVGPGQVLPTPTEKDVFKH 299
Query: 499 LGFPWLEPHERN 510
LG P+ EP ER+
Sbjct: 300 LGLPYREPAERD 311
>gi|344281574|ref|XP_003412553.1| PREDICTED: DNA polymerase beta-like [Loxodonta africana]
Length = 335
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 115/330 (34%), Positives = 185/330 (56%), Gaps = 34/330 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P +I+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHQIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DLK NED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKFVDEGIKTLEDLKKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ E+V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVEKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL------------IFSTHSEEVY 430
+DV++ HP S L + V++L+++ F+ + L + S + E+ Y
Sbjct: 191 MDVLLTHPSFTSESAKQPKLLHRVVEQLQKVGFITDTLSKGETKFMGVCQLPSKNDEKEY 250
Query: 431 ----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P G G
Sbjct: 251 PHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTG 305
Query: 481 VRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
V A L D+EK++FD++ + + EP +R+
Sbjct: 306 V-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|50550535|ref|XP_502740.1| YALI0D12364p [Yarrowia lipolytica]
gi|49648608|emb|CAG80928.1| YALI0D12364p [Yarrowia lipolytica CLIB122]
Length = 710
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 125/338 (36%), Positives = 186/338 (55%), Gaps = 41/338 (12%)
Query: 205 NPPDLNKN--ITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGI 262
+P D N N E+ +L+ Y + R+ SY KA+ V+++ P KI + + LPGI
Sbjct: 383 DPVDKNPNWKTIEVLSRLLKYYEDKHDQWRAQSYRKALNVLKRQPKKITTKKEAVKLPGI 442
Query: 263 GKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL 322
G S+ IQEIV T L L + D V+ SLF +WG+G ATA+K Y++G+RTLDD+
Sbjct: 443 GDSIGSKIQEIVETNGLKLLNVTKLDTSVKVTSLFEGIWGVGKATARKWYKEGYRTLDDI 502
Query: 323 KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA 382
+ +LT +Q++GL+++DD + RIPR EV + ++QKA E+ PEV GSYRRG A
Sbjct: 503 AKKATLTPNQKVGLEHYDDFQERIPRDEVTRHFMVVQKAAHEIDPEVDAHIMGSYRRGAA 562
Query: 383 SCGDLDVVIMHPDRKSHKG--------FLSKYVKKLKEMKFLREDLIFSTHSEEVYP--- 431
S GD+D++ + KG FL + V KL E FL+ L + S + Y
Sbjct: 563 SSGDIDMIF------TKKGATLDELQPFLKELVHKLTEQGFLKCGLTGA--STKWYGCSK 614
Query: 432 -RDI-----YAFGLIAW----------TGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS 475
+DI F L+ W TGN + NR +RLLA KGY L+ GL+
Sbjct: 615 LKDIPQWRRIDFLLVPWAEKGAAFIYFTGNVLFNRSIRLLANKKGYSLNQHGLYAGVL-- 672
Query: 476 GGKQGVRARTS--LKFDTEKEVFDFLGFPWLEPHERNL 511
G++G + ++ ++E ++F+ LG P+ EP ERN+
Sbjct: 673 RGERGSKLNDGYLVEGESEHKIFEILGVPYWEPWERNV 710
>gi|339717642|pdb|3RH5|A Chain A, Dna Polymerase Beta Mutant (Y271) With A
Dideoxy-Terminated Primer With An Incoming
Deoxynucleotide (Dctp)
gi|339717646|pdb|3RH6|A Chain A, Dna Polymerase Beta Mutant (Y271) With A
Dideoxy-Terminated Primer With An Incoming
Ribonucleotide (Rctp)
Length = 335
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 116/330 (35%), Positives = 185/330 (56%), Gaps = 34/330 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL------------IFSTHSEEVY 430
+DV++ HP S L + V++L+++ F+ + L + S + E+ Y
Sbjct: 191 MDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKEY 250
Query: 431 ----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
P+D Y G++A+TG+D+ N+ +R A KG+ +++ + P G G
Sbjct: 251 PHRRIDIRLIPKDQYYCGVLAFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTG 305
Query: 481 VRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
V A L D+EK++FD++ + + EP +R+
Sbjct: 306 V-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|156369028|ref|XP_001627992.1| predicted protein [Nematostella vectensis]
gi|156214957|gb|EDO35929.1| predicted protein [Nematostella vectensis]
Length = 400
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 108/323 (33%), Positives = 172/323 (53%), Gaps = 25/323 (7%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N++IT+ L Y + R+ Y KAI I+ KIE+ ++ LP +G+ +
Sbjct: 80 NEHITDQLQILATSYANTKDQWRALGYKKAISSIKSYHKKIETEEECHRLPFVGERLAKK 139
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I EIV TG L +L+ D K I+LF VWG GP A+ KG RTL+DLK L
Sbjct: 140 IWEIVQTGHLRRLDFI--DPKTEAINLFSGVWGAGPKAAELWVSKGLRTLEDLKRHGGLN 197
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
Q +GL+Y+D+ R+PR E ++ +++ A E + P ++ + GSYRRGK++CGD+DV
Sbjct: 198 KQQEIGLRYYDEFNERMPREEAGKIGEVVKAATEIIDPSLLCITCGSYRRGKSTCGDVDV 257
Query: 390 VIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE--------------------- 428
++ HPD KSH G + + +LK FL +DL+ + ++
Sbjct: 258 LVSHPDGKSHHGVMGPLLCELKSSGFLTDDLVSADIEDQKKYMGVCKLPGEDTKHRRLDI 317
Query: 429 -VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSL 487
V P + +A ++ +TG+D NR +RLLA+ G L + L G + + +++
Sbjct: 318 IVVPYNEWACAIVYFTGSDHFNRSIRLLAKKNGMSLSNHALKTGVVRKDGAK-IYDGSTV 376
Query: 488 KFDTEKEVFDFLGFPWLEPHERN 510
++E+E+FD LG + EP ER+
Sbjct: 377 TVNSERELFDLLGLEYREPQERD 399
>gi|206278|gb|AAA41901.1| DNA polymerase beta [Rattus norvegicus]
gi|1055330|gb|AAB00389.1| high molecular weight DNA polymerase beta [Rattus norvegicus]
Length = 335
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 114/330 (34%), Positives = 187/330 (56%), Gaps = 34/330 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ PE I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLRED------------LIFSTHSEEVY 430
+DV++ HP+ S L + V++L++++F+ + + S + E Y
Sbjct: 191 MDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFITDTRSKGETKFMGVCQLPSENDENEY 250
Query: 431 ----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P G G
Sbjct: 251 PHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTG 305
Query: 481 VRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
V A L D+E+++FD++ + + EP +R+
Sbjct: 306 V-AGEPLPVDSEQDIFDYIQWRYREPKDRS 334
>gi|73979125|ref|XP_532790.2| PREDICTED: DNA polymerase beta isoform 1 [Canis lupus familiaris]
Length = 335
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 115/330 (34%), Positives = 185/330 (56%), Gaps = 34/330 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL------------IFSTHSEEVY 430
+DV++ HP S L + V++L+++ F+ + L + S + E+ Y
Sbjct: 191 MDVLLTHPSFTSESAKQPKLLHRVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKEY 250
Query: 431 ----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P G G
Sbjct: 251 PHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTG 305
Query: 481 VRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
V A L D+EK++FD++ + + EP +R+
Sbjct: 306 V-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|312597477|pdb|3OGU|A Chain A, Dna Polymerase Beta Mutant 5p20 Complexed With 6bp Of Dna
Length = 335
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 116/330 (35%), Positives = 185/330 (56%), Gaps = 34/330 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+L V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINLLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL------------IFSTHSEEVY 430
+DV++ HP S L + V++L+++ F+ + L + S + E+ Y
Sbjct: 191 MDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGKTKFMGVCQLPSKNDEKEY 250
Query: 431 ----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P G G
Sbjct: 251 PHRRIDIRLIPKDQYYCGMLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTG 305
Query: 481 VRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
V A L D+EK++FD++ + + EP +R+
Sbjct: 306 V-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|148232172|ref|NP_001081643.1| DNA polymerase beta [Xenopus laevis]
gi|6015014|sp|O57383.3|DPOLB_XENLA RecName: Full=DNA polymerase beta
gi|2661842|emb|CAA75741.1| DNA polymerase beta [Xenopus laevis]
gi|76780321|gb|AAI06330.1| PolB protein [Xenopus laevis]
Length = 334
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 113/328 (34%), Positives = 179/328 (54%), Gaps = 33/328 (10%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 268
N+ IT+ +L N R + + +Y KA VI K P KI+S + K L G+G + +
Sbjct: 12 NEGITDFLVELANYERNVNRAIHKYNAYRKAASVIAKYPTKIKSGTEAKKLDGVGAKIAE 71
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NEDS 327
I E + TGKL KLE +D+ +I+ V GIGPA A+K +++G +TLDDL+ NE
Sbjct: 72 KIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPAAARKFFDEGIKTLDDLRNNEHK 131
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 387
L H Q++GLK+FDD + RIPR E+ QM+ ++ + PE I GS+RRG S GD+
Sbjct: 132 LNHHQKIGLKHFDDFEKRIPRKEMLQMQEIILDKVNNLDPEYIATVCGSFRRGAESSGDM 191
Query: 388 DVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLI-----------FSTHSEEVY-- 430
D+++ HPD S L + V+ L++ F+ + L+ S++ Y
Sbjct: 192 DILLTHPDFTSESAKQPRLLHQVVQCLEDCNFITDTLVKGDTKFMGVCQLPCESDQDYPY 251
Query: 431 --------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVR 482
P+D Y G++ +TG+D+ N+ +R A KG+ L++ L P G G+
Sbjct: 252 RRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRTHALEKGFTLNEYTLRPL-----GVTGI- 305
Query: 483 ARTSLKFDTEKEVFDFLGFPWLEPHERN 510
A L D+EK++FD++ + + EP +R+
Sbjct: 306 AGEPLPIDSEKDIFDYIQWKYREPKDRS 333
>gi|84579323|dbj|BAE73095.1| hypothetical protein [Macaca fascicularis]
Length = 335
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 115/330 (34%), Positives = 185/330 (56%), Gaps = 34/330 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P+KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPYKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL------------IFSTHSEEVY 430
+DV++ HP S L + V++L++++F+ + L + S + E+ Y
Sbjct: 191 MDVLLTHPSFTSESTKQPKLLHQVVEQLQKVRFITDTLSKGETKFMGVCQLPSKNDEKEY 250
Query: 431 ----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P G G
Sbjct: 251 PHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTG 305
Query: 481 VRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
V A L D+EK++FD++ + + EP R+
Sbjct: 306 V-AGEPLPVDSEKDIFDYIQWKYREPKGRS 334
>gi|355712605|gb|AES04404.1| polymerase , beta [Mustela putorius furo]
Length = 334
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 115/330 (34%), Positives = 185/330 (56%), Gaps = 34/330 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL------------IFSTHSEEVY 430
+DV++ HP S L + V++L+++ F+ + L + S + E+ Y
Sbjct: 191 MDVLLTHPSFTSESTKQPKLLHRVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKEY 250
Query: 431 ----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P G G
Sbjct: 251 PHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTG 305
Query: 481 VRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
V A L D+EK++FD++ + + EP +R+
Sbjct: 306 V-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|190156|gb|AAA60133.1| beta-polymerase [Homo sapiens]
Length = 335
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 116/330 (35%), Positives = 184/330 (55%), Gaps = 34/330 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPDRKSHKG----FLSKYVKKLK------------EMKFLREDLIFSTHSEE-- 428
+DV++ HP S L + V++L+ E KF+ + S + E+
Sbjct: 191 MDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTRSKGETKFMGVCQLPSKNDEKEY 250
Query: 429 --------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
+YP+D Y G++ +TG+D+ N+ +R A+ KG+ +++ + P G G
Sbjct: 251 PHRRIDIRLYPKDQYYCGVLYFTGSDIFNKNMRAHAKEKGFTINEYTIRPL-----GVTG 305
Query: 481 VRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
V A L D+EK++FD++ + + EP +R+
Sbjct: 306 V-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|403259673|ref|XP_003922329.1| PREDICTED: DNA polymerase lambda isoform 4 [Saimiri boliviensis
boliviensis]
Length = 483
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 100/283 (35%), Positives = 156/283 (55%), Gaps = 25/283 (8%)
Query: 251 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 310
E + +PGIGK M + + EI+ +G L KL+H E V + LF +WG G TAQ
Sbjct: 202 EETQEACSIPGIGKRMAEKVVEILESGHLRKLDHI--SESVPVLELFSNIWGAGSKTAQM 259
Query: 311 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 370
Y++G R+L++++++ SLT Q +GLK+++D R+PR E ++E+ +QKA + P ++
Sbjct: 260 WYQQGFRSLEEIRSQASLTTQQAIGLKHYNDFLERMPREEAAEIEQTVQKAAQAFNPRLL 319
Query: 371 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE-- 428
+ GSYRRGK +CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ + +
Sbjct: 320 CVACGSYRRGKVTCGDVDVLITHPDGRSHQGIFSRLLDSLRQQGFLTDDLVSQEENGQQQ 379
Query: 429 ---------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTG 467
V P +A L+ +TG+ NR +R LA++KG L +
Sbjct: 380 KYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHA 439
Query: 468 LFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
L A + V L TEK+VF LG P+ EP ER+
Sbjct: 440 LSTAVVRNPQGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 482
>gi|354496554|ref|XP_003510391.1| PREDICTED: DNA polymerase lambda isoform 2 [Cricetulus griseus]
Length = 476
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 105/287 (36%), Positives = 157/287 (54%), Gaps = 33/287 (11%)
Query: 251 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 310
E + G+PGIGK M + I EI+ +G L KL+H + V + LF +WG G TAQ
Sbjct: 195 EGPQEACGIPGIGKRMAEKIVEILESGHLRKLDHI--SDSVPVLELFSNIWGAGTKTAQM 252
Query: 311 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 370
Y +G R L+D+++ DSLT Q +GLK++DD R+PR E +E+ ++ + + P ++
Sbjct: 253 WYHQGFRNLEDIRSLDSLTTQQAIGLKHYDDFLERMPREEAADIEKTVRISAQAFNPGLL 312
Query: 371 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE-- 428
+ GSYRRGK +CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ +H E
Sbjct: 313 CVACGSYRRGKMTCGDVDVLITHPDGRSHQGIFSRLLDSLRQQGFLTDDLV--SHEENGQ 370
Query: 429 -----------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDD 465
V P +A L+ +TG+ NR +R LA++KG L +
Sbjct: 371 QQKYLGVCRLPGPKQRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSE 430
Query: 466 TGLFPATYGSGGKQGVRARTS--LKFDTEKEVFDFLGFPWLEPHERN 510
L A + QGV+ L TEK+VF LG P+ EP ER+
Sbjct: 431 HALSAAVVRN--SQGVKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 475
>gi|310793348|gb|EFQ28809.1| hypothetical protein GLRG_03953 [Glomerella graminicola M1.001]
Length = 819
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 108/334 (32%), Positives = 169/334 (50%), Gaps = 34/334 (10%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N EI ++ N Y + + R +Y KAI +++ P KI +A++ LPG+G+ + D
Sbjct: 484 NGRTIEILQQMCNYYERVNDTWRPIAYRKAITQLKRQPSKISTAEEAIRLPGVGQRLADK 543
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EIVTT +L +LE E++ + + +F ++G+G A +G RTL+DLK + LT
Sbjct: 544 IEEIVTTNRLQRLESAEQEPMDKVLQMFLNIYGVGSVQASHFVSQGFRTLEDLKEKAKLT 603
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+QR+G+ ++DD+ TRIPR EV+ + +++ ++ P V ++ GGSYRRG GD+D
Sbjct: 604 PNQRIGIDHYDDLNTRIPRSEVKLLGAVVRSEAAKLDPSVQLIIGGSYRRGALDSGDVDF 663
Query: 390 VIMHPDRKSHKG---FLSKYVKKLKEMKFLREDLIFSTHSEE------------------ 428
+I ++ FL K VK L+ FL L S +
Sbjct: 664 IITKKGARATSDLTPFLHKLVKTLETQNFLVARLAGSRDETDGSKWHGCCVLPKIRGVND 723
Query: 429 -------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS 475
V P LI +TGND+ NR +RLLA KG RL+ GL+
Sbjct: 724 ENYRRVWRRVDFLVVPETEIGAALIYFTGNDIFNRSIRLLASKKGMRLNQKGLYKDVMRG 783
Query: 476 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
G+ + ++ E+ +F+ LG W EPHER
Sbjct: 784 PGRVKLTEGELVEGQDERRIFEILGVKWREPHER 817
>gi|431902223|gb|ELK08724.1| DNA polymerase beta [Pteropus alecto]
Length = 335
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 114/330 (34%), Positives = 185/330 (56%), Gaps = 34/330 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL------------IFSTHSEEVY 430
+DV++ HP S L + V++L+++ F+ + L + + + E+ Y
Sbjct: 191 MDVLLTHPSFTSESTKQPKLLHRVVEQLQKVHFITDTLSKGETKFMGVCQLPNKNDEKEY 250
Query: 431 ----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P G G
Sbjct: 251 PHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTG 305
Query: 481 VRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
V A L D+EK++FD++ + + EP +R+
Sbjct: 306 V-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|4505931|ref|NP_002681.1| DNA polymerase beta [Homo sapiens]
gi|114619950|ref|XP_001143904.1| PREDICTED: DNA polymerase beta isoform 3 [Pan troglodytes]
gi|332241022|ref|XP_003269687.1| PREDICTED: DNA polymerase beta [Nomascus leucogenys]
gi|397505584|ref|XP_003823336.1| PREDICTED: DNA polymerase beta [Pan paniscus]
gi|544186|sp|P06746.3|DPOLB_HUMAN RecName: Full=DNA polymerase beta
gi|1943095|pdb|9ICG|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dctp
(1 Millimolar) And Zncl2 (1 Millimolar)
gi|1943098|pdb|9ICH|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dgtp
(1 Millimolar) And Zncl2 (1 Millimolar)
gi|1943101|pdb|9ICI|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dttp
(1 Millimolar) And Zncl2 (1 Millimolar)
gi|1943104|pdb|9ICJ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna
gi|1943107|pdb|9ICK|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Artificial Mother Liquor
gi|1943110|pdb|9ICL|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Pyrophosphate And Mncl2
gi|1943113|pdb|9ICM|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Double Stranded Dna (No 5'-Phosphate)
gi|1943116|pdb|9ICN|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + 2',3'-
Dideoxycytidine-5'-Triphosphate, Soaked In The Presence
Of Ddctp And Mgcl2
gi|1943119|pdb|9ICO|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Dttp And Mgcl2
gi|1943122|pdb|9ICP|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of
Pyrophosphate (1 Millimolar) And Mgcl2 (5 Millimolar)
gi|1943125|pdb|9ICQ|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Datp (1
Millimolar) And Mncl2 (5 Millimolar)
gi|1943128|pdb|9ICR|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + 2'-
Deoxycytidine-5'-Triphosphate, Soaked In The Presence Of
Dctp And Mncl2
gi|1943131|pdb|9ICS|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + 2',3'-
Dideoxycytidine-5'-Triphosphate, Soaked In The Presence
Of Ddctp And Mncl2
gi|1943134|pdb|9ICT|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + 2'-
Deoxyguanosine-5'-Triphosphate, Soaked In The Presence
Of Dgtp And Mncl2
gi|1943137|pdb|9ICU|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Dttp (1
Millimolar) And Mncl2 (5 Millimolar)
gi|1943140|pdb|9ICV|A Chain A, Dna Polymerase Beta (e.c.2.7.7.7)/dna Complex + 2'-
Deoxyadenosine-5'-triphosphate, Soaked In The Presence
Of Datp And Zncl2
gi|1943143|pdb|9ICW|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Native Structure
gi|1943146|pdb|9ICX|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Six Base Pairs Of Dna (non Gapped Dna Only)
gi|1943149|pdb|9ICY|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7) Complexed With Seven
Base Pairs Of Dna (Non Gapped Dna Only)
gi|1943152|pdb|8ICB|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of
Artificial Mother Liquor
gi|1943155|pdb|8ICC|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna (no 5'-phosphate)
gi|1943158|pdb|8ICE|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Cdcl2 (1 Millimolar)
gi|1943161|pdb|8ICF|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(10 Millimolar) And Mgcl2 (50 Millimolar)
gi|1943164|pdb|8ICG|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Mgcl2 (5 Millimolar)
gi|1943167|pdb|8ICH|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dctp
(1 Millimolar) And Mgcl2 (5 Millimolar)
gi|1943170|pdb|8ICI|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dgtp
(1 Millimolar) And Mgcl2 (5 Millimolar)
gi|1943173|pdb|8ICJ|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + THYMIDINE-
5'-Triphosphate, Soaked In The Presence Of Dttp And
Mgcl2
gi|1943176|pdb|8ICK|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar), Mgcl2 (5 Millimolar), And Mncl2 (5
Millimolar)
gi|1943179|pdb|8ICL|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Nicl2 (5 Millimolar)
gi|1943182|pdb|8ICM|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar), Mncl2 (5 Millimolar), And Ammonium
Sulfate (75 Millimolar)
gi|1943185|pdb|8ICN|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Atp
(1 Millimolar) And Mncl2 (5 Millimolar)
gi|1943188|pdb|8ICO|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of
Azt-Tp (1 Millimolar) And Mncl2 (5 Millimolar)
gi|1943191|pdb|8ICP|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Mncl2 (5 Millimolar)
gi|1943194|pdb|8ICQ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Of
Datp (0.1 Millimolar) And Mncl2 (0.5 Millimolar)
gi|1943197|pdb|8ICR|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Mncl2 (5 Millimolar)
gi|1943200|pdb|8ICS|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dctp
(1 Millimolar) And Mncl2 (5 Millimolar)
gi|1943203|pdb|8ICT|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dctp
(1 Millimolar) And Mncl2 (5 Millimolar)
gi|1943206|pdb|8ICU|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Ddatp
(1 Millimolar) And Mncl2 (5 Millimolar)
gi|1943209|pdb|8ICV|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dgtp
(1 Millimolar) And Mncl2 (5 Millimolar)
gi|1943212|pdb|8ICW|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dttp
(1 Millimolar) And Mncl2 (5 Millimolar)
gi|1943215|pdb|8ICX|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Dttp
(1 Millimolar) And Mncl2 (5 Millimolar)
gi|1943218|pdb|8ICY|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + THYMIDINE-
5'-Triphosphate, Soaked In The Presence Of Dttp And
Mncl2
gi|1943221|pdb|8ICZ|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Of
Datp (1 Millimolar), Mncl2 (5 Millimolar), And Lithium
Sulfate (75 Millimolar)
gi|1943224|pdb|9ICA|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + 2'-
Deoxyadenosine-5'-O-(1-Thiotriphosphate), Soaked In The
Presence Of Datp(Alpha)s And Mncl2
gi|1943227|pdb|9ICB|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + 2'-
Deoxyadenosine-5'-Triphosphate, Soaked In The Presence
Of Datp And Cocl2
gi|1943230|pdb|9ICC|A Chain A, Dna Polymerase Beta (e.c.2.7.7.7)/dna Complex + 2'-
Deoxyadenosine-5'-triphosphate, Soaked In The Presence
Of Datp And Crcl3
gi|1943233|pdb|9ICE|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Cucl2 (0.1 Millimolar)
gi|1943236|pdb|9ICF|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX + 2'-
Deoxyadenosine-5'-Triphosphate, Soaked In The Presence
Of Datp And Zncl2
gi|1943239|pdb|1ZQQ|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Mncl2
(15 Millimolar) And Nacl (15 Millimolar)
gi|1943242|pdb|1ZQR|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Nicl2
gi|1943245|pdb|1ZQS|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Tlcl
(0.5 Millimolar)
gi|1943248|pdb|1ZQT|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(0.01 Millimolar) And Zncl2 (0.02 Millimolar)
gi|1943257|pdb|7ICE|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Cacl2
gi|1943260|pdb|7ICF|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Cdcl2
(0.1 Millimolar) (Four-Day Soak)
gi|1943263|pdb|7ICG|A Chain A, Dna Polymerase Beta (e.c.2.7.7.7)/dna Complex, Soaked In
The Presence Of Cdcl2
gi|1943266|pdb|7ICH|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Cocl2
gi|1943269|pdb|7ICI|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Crcl3
(0.1 Millimolar)
gi|1943272|pdb|7ICJ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Cucl2
(0.1 Millimolar)
gi|1943275|pdb|7ICK|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Mgcl2
gi|1943278|pdb|7ICL|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Mncl2
(0.1 Millimolar)
gi|1943281|pdb|7ICM|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Mncl2
(1.0 Millimolar)
gi|1943284|pdb|7ICN|A Chain A, Dna Polymerase Beta (e.c.2.7.7.7)/dna Complex, Soaked In
The Presence Of Nicl2
gi|1943287|pdb|7ICO|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Zncl2
gi|1943290|pdb|7ICP|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Zncl2
(0.01 Millimolar)
gi|1943293|pdb|7ICQ|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Zncl2
gi|1943296|pdb|7ICR|A Chain A, Dna Polymerase Beta (e.c.2.7.7.7)/dna Complex, Soaked In
The Presence Of Zncl2
gi|1943299|pdb|7ICS|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Zncl2
gi|1943302|pdb|7ICT|A Chain A, Dna Polymerase Beta (E.C.2.7.7.7)DNA COMPLEX, SOAKED IN
The Presence Of Zncl2 And Mgcl2
gi|1943305|pdb|7ICU|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Cdcl2
(0.1 Millimolar)
gi|1943308|pdb|7ICV|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Six Base Pairs Of Dna; Soaked In The Presence Of Mncl2
(0.1 Millimolar) And In The Absence Of Nacl
gi|1943311|pdb|8ICA|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Datp
(1 Millimolar) And Cacl2 (5 Millimolar)
gi|1943315|pdb|1ZQA|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Kcl
(150 Millimolar) At Ph 7.5
gi|1943318|pdb|1ZQB|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Bacl2
(150 Millimolar)
gi|1943321|pdb|1ZQC|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Cacl2
(15 Millimolar)
gi|1943324|pdb|1ZQD|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Cacl2
(150 Millimolar)
gi|1943327|pdb|1ZQE|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Crcl3
(saturated Solution)
gi|1943330|pdb|1ZQF|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Cscl
(150 Millimolar)
gi|1943333|pdb|1ZQG|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of A
Sodium-Free Artificial Mother Liquor At Ph 6.5
gi|1943336|pdb|1ZQH|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of A
Sodium-Free Artificial Mother Liquor At Ph 7.5
gi|1943339|pdb|1ZQI|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Kcl
(150 Millimolar)
gi|1943342|pdb|1ZQJ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Cacl2
(15 Millimolar) And Mgcl2 (15 Millimolar)
gi|1943345|pdb|1ZQK|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Kcl
(75 Millimolar) And Mgcl2 (75 Millimolar)
gi|1943348|pdb|1ZQL|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Mncl2
(15 Millimolar) And Mgcl2 (15 Millimolar)
gi|1943351|pdb|1ZQM|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Mncl2
(15 Millimolar)
gi|1943354|pdb|1ZQN|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Bacl2
(15 Millimolar) And Nacl (15 Millimolar)
gi|1943357|pdb|1ZQO|A Chain A, Dna Polymerase Beta (pol B) (e.c.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Cacl2
(15 Millimolar) And Nacl (15 Millimolar)
gi|1943360|pdb|1ZQP|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With
Seven Base Pairs Of Dna; Soaked In The Presence Of Kcl
(75 Millimolar) And Nacl (75 Millimolar)
gi|2392196|pdb|1BPX|A Chain A, Dna Polymerase BetaDNA COMPLEX
gi|2392200|pdb|1BPY|A Chain A, Human Dna Polymerase Beta Complexed With Gapped Dna And
Ddctp
gi|2392204|pdb|1BPZ|A Chain A, Human Dna Polymerase Beta Complexed With Nicked Dna
gi|28373759|pdb|1MQ2|A Chain A, Human Dna Polymerase Beta Complexed With Gapped Dna
Containing An 8-Oxo-7,8-Dihydro-Guanine And Damp
gi|28373763|pdb|1MQ3|A Chain A, Human Dna Polymerase Beta Complexed With Gapped Dna
Containing An 8-Oxo-7,8-Dihydro-Guanine Template Paired
With Dctp
gi|56966095|pdb|1TV9|A Chain A, Human Dna Polymerase Beta Complexed With Nicked Dna
Containing A Mismatched Template Adenine And Incoming
Cytidine
gi|56966099|pdb|1TVA|A Chain A, Human Dna Polymerase Beta Complexed With Nicked Dna
Containing A Mismatched Template Thymidine And Incoming
Cytidine
gi|75765763|pdb|1ZJM|A Chain A, Human Dna Polymerase Beta Complexed With Dna Containing An
A-A Mismatched Primer Terminus
gi|75765767|pdb|1ZJN|A Chain A, Human Dna Polymerase Beta Complexed With Dna Containing An
A-A Mismatched Primer Terminus With Dgtp
gi|99032272|pdb|2FMP|A Chain A, Dna Polymerase Beta With A Terminated Gapped Dna Substrate
And Ddctp With Sodium In The Catalytic Site
gi|99032273|pdb|2FMQ|A Chain A, Sodium In Active Site Of Dna Polymerase Beta
gi|99032277|pdb|2FMS|A Chain A, Dna Polymerase Beta With A Gapped Dna Substrate And
Dumpnpp With Magnesium In The Catalytic Site
gi|118138264|pdb|2I9G|A Chain A, Dna Polymerase Beta With A Benzo[c]phenanthrene Diol
Epoxide Adducted Guanine Base
gi|126030823|pdb|2ISO|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Terminated Primer And 2'-Deoxyguanosine 5'-Beta, Gamma-
Difluoromethylene Triphosphate
gi|126030827|pdb|2ISP|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Terminated Primer And 2'-Deoxyguanosine 5'-Beta, Gamma-
Methylene Triphosphate
gi|146387680|pdb|2P66|A Chain A, Human Dna Polymerase Beta Complexed With Tetrahydrofuran
(abasic Site) Containing Dna
gi|164519479|pdb|2PXI|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Terminated Primer And 2'-Deoxyguanosine 5'-Beta, Gamma-
Monofluoromethylene Triphosphate
gi|188595971|pdb|3C2K|A Chain A, Dna Polymerase Beta With A Gapped Dna Substrate And
Dumpnpp With Manganese In The Active Site
gi|188595975|pdb|3C2L|A Chain A, Ternary Complex Of Dna Polymerase Beta With A C:dapcpp
Mismatch In The Active Site
gi|188595979|pdb|3C2M|A Chain A, Ternary Complex Of Dna Polymerase Beta With A G:dapcpp
Mismatch In The Active Site
gi|258588692|pdb|3ISB|A Chain A, Binary Complex Of Human Dna Polymerase Beta With A Gapped
Dna
gi|258588696|pdb|3ISC|A Chain A, Binary Complex Of Human Dna Polymerase Beta With An Abasic
Site (Thf) In The Gapped Dna
gi|258588700|pdb|3ISD|A Chain A, Ternary Complex Of Human Dna Polymerase Beta With An
Abasic Site (Thf): Dapcpp Mismatch
gi|297342962|pdb|3JPN|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Termin Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Dichloro Methyl Triphosphate
gi|297342966|pdb|3JPO|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Termin Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Monochloromethy Triphosphate
gi|297342970|pdb|3JPP|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Termin Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Monomethyl Meth Triphosphate
gi|297342974|pdb|3JPQ|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Termin Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Monobromo Methy Triphosphate
gi|297342978|pdb|3JPR|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Termin Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Dimethyl Methyl Triphosphate
gi|297342982|pdb|3JPS|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Termin Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Fluoro Methyl M Triphosphate
gi|297342986|pdb|3JPT|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Termin Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Fluoro Chloro M Triphosphate
gi|297787720|pdb|3MBY|A Chain A, Ternary Complex Of Dna Polymerase Beta With Template Base
A And 8oxodgtp In The Active Site With A Dideoxy
Terminated Primer
gi|317455186|pdb|3LK9|A Chain A, Dna Polymerase Beta With A Gapped Dna Substrate And
Dtmp(Cf2)p(Cf2)p
gi|339717641|pdb|3RH4|A Chain A, Dna Polymerase Beta With A Dideoxy-Terminated Primer With
An Incoming Ribonucleotide (Rctp)
gi|372466921|pdb|3RJE|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Gapped Dna
Containing 8odg At Template Position
gi|372466925|pdb|3RJF|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Gapped Dna
Containing (Syn)8odg At Template Position Paired With
Non-Hydrolyzable Datp Analog (Dapcpp)
gi|372466929|pdb|3RJG|A Chain A, Binary Complex Of Dna Polymerase Beta With A Gapped Dna
Containing 8odg:da Base-Pair At Primer Terminus
gi|372466933|pdb|3RJH|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Gapped Dna
Containing (Syn)8odg:da At Primer Terminus And
Dg:dcmp(Cf2)ppin The Active Site
gi|372466937|pdb|3RJI|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Gapped Dna
Containing 8odg At Template Position Paired With
Non-Hydrolyzable Dctp Analog (Dcmp(Cf2)pp)
gi|372466941|pdb|3RJJ|A Chain A, Ternary Complex Crystal Structure Of Dna Polymerase Beta
With Template 8odg Provides Insight Into Mutagenic
Lesion Bypass
gi|372466945|pdb|3RJK|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Gapped Dna
Containing 8odg:dc Base Pair At Primer Terminus And
Dg:dcmp(Cf2)pp In The Active Site
gi|380764187|pdb|3TFR|A Chain A, Ternary Complex Structure Of Dna Polymerase Beta With A
Gapped Dna Substrate And A, B Damp(Cf2)pp In The Active
Site
gi|380764191|pdb|3TFS|A Chain A, Ternary Complex Structure Of Dna Polymerase Beta With A
Gapped Dna Substrate And A, B Damp(Cfh)pp In The Active
Site: Stereoselective Binding Of (S) Isomer
gi|390981022|pdb|4DO9|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Terminated Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Monofluoromethylene Triphosphate: Stereoselective
Binding Of R-Isomer
gi|390981026|pdb|4DOA|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Terminated Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Monofluoromethylene Triphosphate: Non-Interactive
Binding Of S-Isomer
gi|390981030|pdb|4DOB|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Terminated Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Monochlororomethylene Triphosphate:
Stereoselective Binding Of R-Isomer
gi|390981034|pdb|4DOC|A Chain A, Ternary Complex Of Dna Polymerase Beta With A Dideoxy
Terminated Primer And 2'-Deoxyguanosine 5'-Beta,
Gamma-Monochlororomethylene Triphosphate:binding Of
S-Isomer
gi|19550959|gb|AAL91594.1|AF491812_1 DNA polymerase beta [Homo sapiens]
gi|292397|gb|AAB59441.1| beta-polymerase [Homo sapiens]
gi|1060896|dbj|BAA06099.1| DNA polymerase beta [Homo sapiens]
gi|49168492|emb|CAG38741.1| POLB [Homo sapiens]
gi|49456561|emb|CAG46601.1| POLB [Homo sapiens]
gi|71682446|gb|AAI00289.1| Polymerase (DNA directed), beta [Homo sapiens]
gi|76827621|gb|AAI06910.1| Polymerase (DNA directed), beta [Homo sapiens]
gi|119583625|gb|EAW63221.1| polymerase (DNA directed), beta [Homo sapiens]
gi|189054625|dbj|BAG37475.1| unnamed protein product [Homo sapiens]
gi|208967076|dbj|BAG73552.1| polymerase (DNA directed) beta [synthetic construct]
gi|410209680|gb|JAA02059.1| polymerase (DNA directed), beta [Pan troglodytes]
gi|410259830|gb|JAA17881.1| polymerase (DNA directed), beta [Pan troglodytes]
gi|410333957|gb|JAA35925.1| polymerase (DNA directed), beta [Pan troglodytes]
Length = 335
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 115/330 (34%), Positives = 184/330 (55%), Gaps = 34/330 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL------------IFSTHSEEVY 430
+DV++ HP S L + V++L+++ F+ + L + S + E+ Y
Sbjct: 191 MDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKEY 250
Query: 431 ----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P G G
Sbjct: 251 PHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTG 305
Query: 481 VRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
V A L D+EK++FD++ + + EP +R+
Sbjct: 306 V-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|60827766|gb|AAX36812.1| polymerase beta [synthetic construct]
Length = 336
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 115/330 (34%), Positives = 184/330 (55%), Gaps = 34/330 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL------------IFSTHSEEVY 430
+DV++ HP S L + V++L+++ F+ + L + S + E+ Y
Sbjct: 191 MDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKEY 250
Query: 431 ----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P G G
Sbjct: 251 PHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTG 305
Query: 481 VRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
V A L D+EK++FD++ + + EP +R+
Sbjct: 306 V-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|351709536|gb|EHB12455.1| DNA polymerase beta [Heterocephalus glaber]
Length = 335
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 114/330 (34%), Positives = 185/330 (56%), Gaps = 34/330 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLMELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDMSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLSEVKKLDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL------------IFSTHSEEVY 430
+DV++ HPD S L V++L+++ F+ + L + S + E+ Y
Sbjct: 191 MDVLLTHPDFTSESSKQPKLLHHVVEQLQKIHFITDTLSKGETKFMGVCQLPSKNDEKEY 250
Query: 431 ----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
P+D Y G++ +TG+D+ N+ +R A +G+ +++ + P G G
Sbjct: 251 PHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEQGFTINEYTIRPL-----GVTG 305
Query: 481 VRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
V A L D+EK++FD++ + + EP +R+
Sbjct: 306 V-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|291409035|ref|XP_002720811.1| PREDICTED: DNA-directed DNA polymerase beta [Oryctolagus cuniculus]
Length = 335
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 114/330 (34%), Positives = 184/330 (55%), Gaps = 34/330 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVNQAVHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL------------IFSTHSEEVY 430
+DV++ HP S L + V++L+++ F+ + L + + E+ Y
Sbjct: 191 MDVLLTHPSFTSESAKQPKLLHRVVEQLQKVHFITDTLSKGETKFMGVCQLPIENDEKEY 250
Query: 431 ----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P G G
Sbjct: 251 PHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTG 305
Query: 481 VRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
V A L D+EK++FD++ + + EP +R+
Sbjct: 306 V-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|229597882|pdb|3GDX|A Chain A, Dna Polymerase Beta With A Gapped Dnd Substrate And
Dtmp(Cf2)pp
Length = 326
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 115/330 (34%), Positives = 184/330 (55%), Gaps = 34/330 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 2 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 61
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 62 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 121
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 122 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 181
Query: 387 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL------------IFSTHSEEVY 430
+DV++ HP S L + V++L+++ F+ + L + S + E+ Y
Sbjct: 182 MDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKEY 241
Query: 431 ----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P G G
Sbjct: 242 PHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTG 296
Query: 481 VRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
V A L D+EK++FD++ + + EP +R+
Sbjct: 297 V-AGEPLPVDSEKDIFDYIQWKYREPKDRS 325
>gi|395741934|ref|XP_003777666.1| PREDICTED: DNA polymerase lambda [Pongo abelii]
Length = 476
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 102/283 (36%), Positives = 155/283 (54%), Gaps = 25/283 (8%)
Query: 251 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 310
E + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G TAQ
Sbjct: 195 EETQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQM 252
Query: 311 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 370
Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA + ++
Sbjct: 253 WYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLL 312
Query: 371 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE-- 428
+ GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ + +
Sbjct: 313 CVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQQGFLTDDLVSQEENGQQQ 372
Query: 429 ---------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTG 467
V P +A L+ +TG+ NR +R LA++KG L +
Sbjct: 373 KYLGVCRLPGPGWRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHA 432
Query: 468 LFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
L A + V L TEK+VF LG P+ EP ER+
Sbjct: 433 LSTAVVRNTQGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 475
>gi|344274827|ref|XP_003409216.1| PREDICTED: DNA polymerase lambda isoform 2 [Loxodonta africana]
Length = 483
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 100/283 (35%), Positives = 155/283 (54%), Gaps = 25/283 (8%)
Query: 251 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 310
E + +PG+GK M + + EI+ +G L KL+H E V + LF +WG G TAQ
Sbjct: 202 EETQEACSIPGVGKRMAEKVVEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQM 259
Query: 311 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 370
Y++G RTL+D++++ SLT Q +GLKY+ D R+PR E ++++ +Q++ + + P ++
Sbjct: 260 WYQQGFRTLEDIRSQASLTTQQAIGLKYYGDFLERMPREEAAEIQQTVQESAQALNPGLL 319
Query: 371 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE-- 428
+ GSYRRGKA+CGD+DV+I HPD +SH+G S + L++ FL +DL+ + +
Sbjct: 320 CVACGSYRRGKATCGDVDVLITHPDGRSHQGIFSHLLDSLRQRGFLTDDLVSQEQNGQQQ 379
Query: 429 ---------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTG 467
V P +A L+ +TG+ NR +R LA++KG L +
Sbjct: 380 KYLGVCQLPGPRRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHA 439
Query: 468 LFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
L A V L TEK+VF LG P+ EP ER+
Sbjct: 440 LSTAVVRDTQGLKVGPGWVLPTPTEKDVFRLLGLPYREPAERD 482
>gi|417399140|gb|JAA46600.1| Putative dna polymerase iv family x [Desmodus rotundus]
Length = 335
Score = 187 bits (476), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 114/330 (34%), Positives = 184/330 (55%), Gaps = 34/330 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL------------IFSTHSEEVY 430
+DV++ HP S L + V++L+++ F+ + L + S + + Y
Sbjct: 191 MDVLLTHPSFTSESNKQPKLLHRVVEQLQKVCFITDTLSKGETKFMGVCQLPSKNDGKEY 250
Query: 431 ----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P G G
Sbjct: 251 PHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYSIRPL-----GVTG 305
Query: 481 VRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
V A L D+EK++FD++ + + EP +R+
Sbjct: 306 V-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|106880497|ref|NP_001006894.2| DNA-directed DNA polymerase beta [Xenopus (Silurana) tropicalis]
gi|89272500|emb|CAJ82346.1| polymerase (DNA directed), beta [Xenopus (Silurana) tropicalis]
Length = 334
Score = 187 bits (476), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 116/329 (35%), Positives = 180/329 (54%), Gaps = 33/329 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN+ IT+ +L N R + + +Y KA VI K P KI+S + K L G+G +
Sbjct: 11 LNEGITDFLVELANYERNVNRAIHKYNAYRKAASVIAKYPSKIKSGTEAKKLDGVGAKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NED 326
+ I E + TGKL KLE +D+ +I+ V GIGPA A+KL ++G +TLDDL+ NE
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPAAARKLVDEGIKTLDDLRNNEH 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H Q++GLKYFDD + RIPR E+ QM+ + + + P+ I GS+RRG S GD
Sbjct: 131 KLNHHQKIGLKYFDDFEKRIPRKEMIQMQEKVIDRIKILDPQYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLI-----------FSTHSEE--- 428
+DV++ HPD S L + V+ L+E +F+ + L+ +E
Sbjct: 191 MDVLLTHPDFTSESAKQPHLLRQVVQCLEECEFITDTLVKGDTKFMGVCQLPCEGDEEHP 250
Query: 429 -------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGV 481
+ P+D Y G++ +TG+D+ N+ +R A KG+ L++ L P G G+
Sbjct: 251 HRRLDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTLNEYTLRPL-----GVTGI 305
Query: 482 RARTSLKFDTEKEVFDFLGFPWLEPHERN 510
A L D+EK++FD++ + + EP +R+
Sbjct: 306 -AGEPLPIDSEKDIFDYIQWKYREPKDRS 333
>gi|426365959|ref|XP_004050033.1| PREDICTED: DNA polymerase lambda isoform 3 [Gorilla gorilla
gorilla]
Length = 483
Score = 187 bits (476), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 102/283 (36%), Positives = 155/283 (54%), Gaps = 25/283 (8%)
Query: 251 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 310
E + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G TAQ
Sbjct: 202 EETQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQM 259
Query: 311 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 370
Y++G R+L+D+ ++ SLT Q +GLK++ D R+PR E ++E+ +QKA + ++
Sbjct: 260 WYQQGFRSLEDIHSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLL 319
Query: 371 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE-- 428
+ GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ + +
Sbjct: 320 CVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQQGFLTDDLVSQEENGQQQ 379
Query: 429 ---------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTG 467
V P +A L+ +TG+ NR +R LA++KG L +
Sbjct: 380 KYLGVCRLPGPGWRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHA 439
Query: 468 LFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
L A + V + L TEK+VF LG P+ EP ER+
Sbjct: 440 LSTAVVRNTHGCKVGSGRVLPTPTEKDVFRLLGLPYREPAERD 482
>gi|410956338|ref|XP_003984799.1| PREDICTED: DNA polymerase beta [Felis catus]
Length = 335
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 114/330 (34%), Positives = 185/330 (56%), Gaps = 34/330 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL K+ED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKHED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL------------IFSTHSEEVY 430
+DV++ HP S L + V++L+++ F+ + L + S + E+ Y
Sbjct: 191 MDVLLTHPSFTSESTKQPKLLHRVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKEY 250
Query: 431 ----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P G G
Sbjct: 251 PHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTG 305
Query: 481 VRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
V A L D+EK++FD++ + + EP +R+
Sbjct: 306 V-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|429544471|pdb|4F5N|A Chain A, Open Ternary Complex Of R283k Dna Polymerase Beta With A
Metal Free Dctp Analog
gi|429544475|pdb|4F5O|A Chain A, Open Ternary Complex Of R283k Dna Polymerase Beta With A
One Metal Bound Dctp Analog
gi|429544479|pdb|4F5P|A Chain A, Open Ternary Mismatch Complex Of R283k Dna Polymerase Beta
With A Datp Analog
gi|429544483|pdb|4F5Q|A Chain A, Closed Ternary Complex Of R283k Dna Polymerase Beta
gi|429544487|pdb|4F5R|A Chain A, Open And Closed Ternary Complex Of R283k Dna Polymerase
Beta With A Dctp Analog In The Same Asymmetric Unit
gi|429544488|pdb|4F5R|B Chain B, Open And Closed Ternary Complex Of R283k Dna Polymerase
Beta With A Dctp Analog In The Same Asymmetric Unit
gi|442570775|pdb|4GXI|A Chain A, R283k Dna Polymerase Beta Binary Complex With A Templating
8og
gi|442570779|pdb|4GXJ|A Chain A, R283k Dna Polymerase Beta Ternary Complex With A
Templating 8og And Incoming Dctp Analog
gi|442570783|pdb|4GXK|A Chain A, R283k Dna Polymerase Beta Ternary Complex With A
Templating 8og And Incoming Datp Analog
Length = 335
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 114/330 (34%), Positives = 184/330 (55%), Gaps = 34/330 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL------------IFSTHSEEVY 430
+DV++ HP S L + V++L+++ F+ + L + S + E+ Y
Sbjct: 191 MDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKEY 250
Query: 431 ----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
P+D Y G++ +TG+D+ N+ ++ A KG+ +++ + P G G
Sbjct: 251 PHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMKAHALEKGFTINEYTIRPL-----GVTG 305
Query: 481 VRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
V A L D+EK++FD++ + + EP +R+
Sbjct: 306 V-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|291463291|ref|NP_001167556.1| DNA polymerase lambda isoform b [Homo sapiens]
gi|158257882|dbj|BAF84914.1| unnamed protein product [Homo sapiens]
Length = 483
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 102/283 (36%), Positives = 155/283 (54%), Gaps = 25/283 (8%)
Query: 251 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 310
E + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G TAQ
Sbjct: 202 EETQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQM 259
Query: 311 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 370
Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA + ++
Sbjct: 260 WYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLL 319
Query: 371 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE-- 428
+ GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ + +
Sbjct: 320 CVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQ 379
Query: 429 ---------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTG 467
V P +A L+ +TG+ NR +R LA++KG L +
Sbjct: 380 KYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHA 439
Query: 468 LFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
L A + V L TEK+VF LG P+ EP ER+
Sbjct: 440 LSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 482
>gi|332212623|ref|XP_003255419.1| PREDICTED: DNA polymerase lambda isoform 3 [Nomascus leucogenys]
Length = 482
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 101/283 (35%), Positives = 155/283 (54%), Gaps = 25/283 (8%)
Query: 251 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 310
E + +PGIGK M + I EI+ +G L KL+H + V + LF +WG G TAQ
Sbjct: 201 EETQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SDSVPVLELFSNIWGAGTKTAQM 258
Query: 311 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 370
Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA + ++
Sbjct: 259 WYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLL 318
Query: 371 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE-- 428
+ GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ + +
Sbjct: 319 CVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQQGFLTDDLVSQEENGQQQ 378
Query: 429 ---------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTG 467
V P +A L+ +TG+ NR +R LA++KG L +
Sbjct: 379 KYLGVCRLPGPGWRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHA 438
Query: 468 LFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
L A + V L TEK+VF LG P+ EP ER+
Sbjct: 439 LSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 481
>gi|21729749|ref|NP_035260.1| DNA polymerase beta [Mus musculus]
gi|48428077|sp|Q8K409.3|DPOLB_MOUSE RecName: Full=DNA polymerase beta
gi|21359795|gb|AAM49616.1|AF513911_1 DNA polymerase beta [Mus musculus]
gi|26345958|dbj|BAC36630.1| unnamed protein product [Mus musculus]
gi|38511640|gb|AAH60998.1| Polymerase (DNA directed), beta [Mus musculus]
gi|74145064|dbj|BAE27405.1| unnamed protein product [Mus musculus]
gi|74191657|dbj|BAE30399.1| unnamed protein product [Mus musculus]
gi|148700936|gb|EDL32883.1| polymerase (DNA directed), beta [Mus musculus]
Length = 335
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 113/330 (34%), Positives = 185/330 (56%), Gaps = 34/330 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEIKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL---------IFSTHSEE----- 428
+DV++ HP+ S L + V++L+++ F+ + L + SE+
Sbjct: 191 MDVLLTHPNFTSESSKQPKLLHRVVEQLQKVHFITDTLSKGETKFMGVCQLPSEKDGKEY 250
Query: 429 --------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
+ P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P G G
Sbjct: 251 PHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTG 305
Query: 481 VRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
V A L D+E+++FD++ + + EP +R+
Sbjct: 306 V-AGEPLPVDSEQDIFDYIQWRYREPKDRS 334
>gi|551677|gb|AAB60688.1| DNA polymerase beta [Homo sapiens]
Length = 335
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 115/330 (34%), Positives = 183/330 (55%), Gaps = 34/330 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT+ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDKLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL------------IFSTHSEEVY 430
+DV++ HP S L + V++L+++ F+ + L + S + E+ Y
Sbjct: 191 MDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKEY 250
Query: 431 ----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P G G
Sbjct: 251 PHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTG 305
Query: 481 VRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
V A L D+EK++FD++ + + EP +R+
Sbjct: 306 V-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|397510314|ref|XP_003825543.1| PREDICTED: DNA polymerase lambda isoform 4 [Pan paniscus]
Length = 483
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 102/283 (36%), Positives = 155/283 (54%), Gaps = 25/283 (8%)
Query: 251 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 310
E + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G TAQ
Sbjct: 202 EETQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQM 259
Query: 311 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 370
Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA + ++
Sbjct: 260 WYQQGFRSLEDIRSQASLTTQQAVGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLL 319
Query: 371 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE-- 428
+ GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ + +
Sbjct: 320 CVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQ 379
Query: 429 ---------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTG 467
V P +A L+ +TG+ NR +R LA++KG L +
Sbjct: 380 KYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHA 439
Query: 468 LFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
L A + V L TEK+VF LG P+ EP ER+
Sbjct: 440 LSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 482
>gi|62898806|dbj|BAD97257.1| polymerase (DNA directed), beta variant [Homo sapiens]
Length = 335
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 115/330 (34%), Positives = 183/330 (55%), Gaps = 34/330 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL------------IFSTHSEEVY 430
+DV+ HP S L + V++L+++ F+ + L + S + E+ Y
Sbjct: 191 MDVLPTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKEY 250
Query: 431 ----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P G G
Sbjct: 251 PHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTG 305
Query: 481 VRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
V A L D+EK++FD++ + + EP +R+
Sbjct: 306 V-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|297682785|ref|XP_002819090.1| PREDICTED: DNA polymerase beta [Pongo abelii]
Length = 335
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 114/330 (34%), Positives = 184/330 (55%), Gaps = 34/330 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL------------IFSTHSEE-- 428
+DV++ HP S L + V++L+++ F+ + L + S + E+
Sbjct: 191 MDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKEC 250
Query: 429 --------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
+ P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P G G
Sbjct: 251 PHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTG 305
Query: 481 VRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
V A L D+EK++FD++ + + EP +R+
Sbjct: 306 V-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|393219346|gb|EJD04833.1| Nucleotidyltransferase [Fomitiporia mediterranea MF3/22]
Length = 592
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 124/336 (36%), Positives = 182/336 (54%), Gaps = 37/336 (11%)
Query: 209 LNKNITEIFGKL--INIYRALGEDR----RSFSYYKAIPVIEKLPFKIESADQVKGLPGI 262
+N++I + +L IN + G+ R R FSY K+I I P +I + + + GI
Sbjct: 253 VNQDIVDKLSELEEINRTKISGDPREQRWRVFSYGKSIRAIRAHPKRIRNYEDAIAIRGI 312
Query: 263 GKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL 322
G I EI+ TG L +++ ++ E V+ I LF ++G+G +TAQK Y G RTLDD+
Sbjct: 313 GSKTAAKIVEIIKTGDLGRIK-YDNTEDVQAIKLFNNIYGVGLSTAQKWYSMGCRTLDDV 371
Query: 323 KNED---SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRR 379
KN +++ Q +GLKY+DDI TRIPR EVE++ ++ E+ P++ L GSYRR
Sbjct: 372 KNRKGGITVSDVQEIGLKYYDDINTRIPRGEVEEIFNRVKLIALEIDPKLFFLLMGSYRR 431
Query: 380 GKASCGDLDVVIMHP--DRKSHKGFLSKYVKKLKEMKFLREDLIFS---THSEEVY---- 430
G SCGD+D+++ P D ++H+G L + +K+L L EDL E+ Y
Sbjct: 432 GAKSCGDIDILMTRPTDDGRTHQGVLRRLLKELHLQGILTEDLAIPEDFNDLEQTYRGLC 491
Query: 431 ------PR---DIYAF-------GLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATY- 473
PR DI LI +TG+D+ NR +RL A+S GY L GL
Sbjct: 492 RKDDKSPRRRIDILVVPYHERGGALIYYTGDDIFNRAIRLKAKSMGYSLSQHGLATRVLR 551
Query: 474 GSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
GK+ V A + +TE+++F LG PW EPHER
Sbjct: 552 DHRGKKMVPADL-VASETEEQIFHILGVPWQEPHER 586
>gi|196009372|ref|XP_002114551.1| hypothetical protein TRIADDRAFT_28268 [Trichoplax adhaerens]
gi|190582613|gb|EDV22685.1| hypothetical protein TRIADDRAFT_28268 [Trichoplax adhaerens]
Length = 342
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 108/329 (32%), Positives = 173/329 (52%), Gaps = 28/329 (8%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
NK+IT+I L Y LG+ R Y KAI I+ P +I + ++ + +P IGK + D
Sbjct: 15 NKHITDILEILQKKYENLGDQWRVKGYTKAISSIKNYPREITTREEAEAIPNIGKRLADK 74
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I EI++ G L KL++ + D + +++F ++WG GPATA +G TLDD++ + L
Sbjct: 75 IWEIISCGHLRKLDYMDNDVQT-ALNVFTKIWGAGPATAHNWIAQGLYTLDDIRAKAKLN 133
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+ Q +GLKY+DD RIPR EV ++E ++++ + + ++ GSYRR K +CGD+D+
Sbjct: 134 YHQSIGLKYYDDFNERIPRAEVVEIEAVIREEATAIELGLEVITCGSYRREKPTCGDVDI 193
Query: 390 VIMHPDRKSHKGFLSKYVKKLKEMKFLREDLI-------------FSTHSEE-------- 428
+I HP+ +SH+G K +++L+ FL E L+ EE
Sbjct: 194 LISHPNGRSHQGVYHKLLRRLQAKDFLTEILVNQDVDIDHQKLLGVCKLPEEGRKYRRLD 253
Query: 429 --VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDD----TGLFPATYGSGGKQGVR 482
V P +A L+ +TG+ NR +RLLA K L + G+ G Q +
Sbjct: 254 IIVVPYREWACSLLYFTGSGHFNRSMRLLARKKRMHLSEHAISVGVLRKVTACSGNQKLT 313
Query: 483 ARTSLKFDTEKEVFDFLGFPWLEPHERNL 511
T + E ++F LG +LEP +R+
Sbjct: 314 RGTPVPTKCEADIFALLGLDYLEPKDRDC 342
>gi|126303417|ref|XP_001373104.1| PREDICTED: DNA polymerase beta [Monodelphis domestica]
Length = 335
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 112/330 (33%), Positives = 183/330 (55%), Gaps = 34/330 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT+ +L N R + + + +Y KA VI K P KI+S + K L G+G +
Sbjct: 11 LNAGITDFLTELANYERNVNQAIHKYNAYRKAASVIAKYPTKIKSGAEAKKLDGVGAKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E ++TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNE+
Sbjct: 71 EKIDEFLSTGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEN 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GL+YFDD + RIPR E+ QM+ ++ ++V P+ I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLRYFDDFEKRIPREEMLQMQDIVLNEVKKVDPKYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL------------IFSTHSEEVY 430
+D+++ HP S L + V++L+++ F+ + L + S E+ Y
Sbjct: 191 MDILLTHPSFTSESAKQPKLLHQVVEQLQKVHFITDTLSKGDTKFMGVCQLSSEDDEDPY 250
Query: 431 ----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
P+D Y G++ +TG+D+ N+ +R A G+ +++ + P G G
Sbjct: 251 PYRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEMGFTINEYTIRPL-----GVTG 305
Query: 481 VRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
V A L D+EK++FD++ + + EP +R+
Sbjct: 306 V-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|403336657|gb|EJY67523.1| Helix-hairpin-helix motif family protein [Oxytricha trifallax]
Length = 611
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 120/378 (31%), Positives = 184/378 (48%), Gaps = 35/378 (9%)
Query: 162 ETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLI 221
E + + +S E L N S + S + + P +N I + KL
Sbjct: 241 ENQIIEDGQIKELSDEKLINR----SQDGNLESQEMINTETTKKKP-MNDEIIKQLEKLY 295
Query: 222 NIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSK 281
Y A + R Y + + + I S +Q++ +P +G + +QE++ G + +
Sbjct: 296 KYYEAQDDKGRMHGYRRGLTFLRSYKDPIYSVEQLESVPYLGHGILKKVQELIEEGSIKR 355
Query: 282 LEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NEDSLTHSQRLGLKYFD 340
E DE V L VWG+GP AQKLY++G R+++DL+ N+ LT Q++GLKY++
Sbjct: 356 FEFLSHDESVVVAELLEGVWGVGPKLAQKLYKQGIRSIEDLRQNQHLLTEMQKIGLKYYE 415
Query: 341 DIKTRIPRHEVEQMERLLQKAGEEVLPE----VIILCGGSYRRGKASCGDLDVVIMHPDR 396
DIK RIPR EV +M L++K ++P + + GSYRRGK SCGD+D++I D
Sbjct: 416 DIKQRIPRDEVTEMLELIRKTALILIPNGQKLLKVDACGSYRRGKQSCGDIDILITKVDG 475
Query: 397 KSHKGFLSKYVKKLKEMKFLRE-----------------------DLIFSTHSEEVYPRD 433
S GF+ V +L++ FL+E DL F + YP
Sbjct: 476 SSIHGFVKLLVLELEKQGFLKERLGGLRFSHTGSEGYMGMCQLKPDLPFRRIDIKAYPLS 535
Query: 434 IYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEK 493
Y F + +TG+ NR +RL A+ KGY L D GL P G K V S+ +TE+
Sbjct: 536 QYGFAQLYFTGSGNFNRSMRLFAQKKGYSLSDYGLMPVIRVKGEK--VAEFESVPCETEE 593
Query: 494 EVFDFLGFPWLEPHERNL 511
+VF L + P+ER++
Sbjct: 594 DVFKALNLDYKPPYERDI 611
>gi|194374341|dbj|BAG57066.1| unnamed protein product [Homo sapiens]
Length = 312
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 102/283 (36%), Positives = 155/283 (54%), Gaps = 25/283 (8%)
Query: 251 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 310
E + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G TAQ
Sbjct: 31 EETQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQM 88
Query: 311 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 370
Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA + ++
Sbjct: 89 WYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLL 148
Query: 371 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE-- 428
+ GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ + +
Sbjct: 149 CVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQ 208
Query: 429 ---------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTG 467
V P +A L+ +TG+ NR +R LA++KG L +
Sbjct: 209 KYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHA 268
Query: 468 LFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
L A + V L TEK+VF LG P+ EP ER+
Sbjct: 269 LSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 311
>gi|402881275|ref|XP_003904199.1| PREDICTED: DNA polymerase lambda isoform 3 [Papio anubis]
Length = 483
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 103/285 (36%), Positives = 158/285 (55%), Gaps = 29/285 (10%)
Query: 251 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 310
E + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G TA+
Sbjct: 202 EETQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTARM 259
Query: 311 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 370
Y++G R+L+D++++ SLT Q +GLK+++D R+PR E ++E+ +QKA + ++
Sbjct: 260 WYQQGFRSLEDIRSQASLTTQQAIGLKHYNDFLERMPREEATEIEQTVQKAAQAFNSGLL 319
Query: 371 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE-- 428
+ GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ + +
Sbjct: 320 CVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQQGFLTDDLVSQEENGQQQ 379
Query: 429 ---------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTG 467
V P +A L+ +TG+ NR +R LA++KG L +
Sbjct: 380 KYLGVCRLPGPGWRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHA 439
Query: 468 LFPATYGS--GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
L A + G K G L TEK+VF LG P+ EP ER+
Sbjct: 440 LSTAVVRNTHGCKMG--PGRVLPTPTEKDVFRLLGLPYREPAERD 482
>gi|347837705|emb|CCD52277.1| hypothetical protein [Botryotinia fuckeliana]
Length = 818
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 113/347 (32%), Positives = 174/347 (50%), Gaps = 46/347 (13%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSM 266
P+ N + +I ++ + Y +G+ R+ SY +A ++ P I + + +P IG+ +
Sbjct: 475 PNPNNHTIQILSRMKDYYERIGDQWRTRSYMQACGQLKNQPALIRTFSEAIVIPKIGQRI 534
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED 326
I+EIV TG+L +LEH E + + + LF ++G+ A K +GHR+ DLKN
Sbjct: 535 AKKIEEIVLTGRLRRLEHAEAEPDDKILKLFMGIYGVNYKLASKWISQGHRSFADLKNNI 594
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
LT SQR+G++++DD++ RIPRHE+EQ+ + + + + PE+ I GGSYRRG + GD
Sbjct: 595 KLTPSQRIGIEHYDDLQLRIPRHEIEQLGKFITDTTKTIDPEIEITIGGSYRRGAKTSGD 654
Query: 387 LDVVIMHPDRKSHKG-------FLSKYVKKLKEMKFLREDLIFSTHSEE----------- 428
+D++I KSH FLS VK L FL L ++E
Sbjct: 655 IDIII----SKSHTTQTTQLTPFLSSLVKSLTASHFLTAALAVPHNNEGSKWHGCCVLPS 710
Query: 429 -----------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPA 471
+ P L+ +TG+D+ NR +RLLA KG RL+ GL+
Sbjct: 711 SSSASHPPNPWRRIDFLLVPASEIGAALLYFTGDDIFNRSMRLLAGKKGMRLNQRGLYRD 770
Query: 472 TYGSGGKQG-------VRARTSLKFDTEKEVFDFLGFPWLEPHERNL 511
G K G V T ++ E+ +F+ LG PW EP ER L
Sbjct: 771 AMRGGMKSGKWETRNKVTDGTLVEGRDERAIFEALGVPWREPWERVL 817
>gi|301756146|ref|XP_002913916.1| PREDICTED: DNA polymerase lambda-like isoform 2 [Ailuropoda
melanoleuca]
Length = 483
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 104/285 (36%), Positives = 157/285 (55%), Gaps = 29/285 (10%)
Query: 251 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 310
E + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G TAQ
Sbjct: 202 EETQEAFSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQM 259
Query: 311 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 370
Y++G RTL+D++ + SLT Q +GLK++DD RIPR E ++E+ +++A + P ++
Sbjct: 260 WYQQGFRTLEDIRGQASLTTQQAIGLKHYDDFLERIPREEATEIEQTVREAAQAFNPGLL 319
Query: 371 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE-- 428
+ GSYRRGKA+CGD+DV++ HPD +SH+G S + L+ FL +DL+ + +
Sbjct: 320 CVACGSYRRGKATCGDVDVLLTHPDGRSHQGIFSLLLDSLRRQGFLTDDLVSQEENGQQQ 379
Query: 429 ---------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTG 467
V P +A L+ +TG+ NR +R LA++KG L +
Sbjct: 380 KYLGVCQLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHA 439
Query: 468 LFPATYGSGGKQGVRARTS--LKFDTEKEVFDFLGFPWLEPHERN 510
L +T QG++ L TEK+VF LG P+ EP ER+
Sbjct: 440 L--STSVVRDTQGLKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 482
>gi|206276|gb|AAA41900.1| polymerase beta [Rattus norvegicus]
Length = 318
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 108/303 (35%), Positives = 174/303 (57%), Gaps = 33/303 (10%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
+Y KA VI K P KI+S + K LPG+G + + I E + TGKL KLE +D+ +I
Sbjct: 21 AYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSI 80
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQ 353
+ V GIGP+ A+KL ++G +TL+DL KNED L H QR+GLKYF+D + RIPR E+ Q
Sbjct: 81 NFLTRVTGIGPSAARKLVDEGIKTLEDLRKNEDKLNHHQRIGLKYFEDFEKRIPREEMLQ 140
Query: 354 MERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKG----FLSKYVKK 409
M+ ++ +++ PE I GS+RRG S GD+DV++ HP+ S L + V++
Sbjct: 141 MQDIVLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPNFTSESSKQPKLLHRVVEQ 200
Query: 410 LKEMKFLRED------------LIFSTHSEEVY----------PRDIYAFGLIAWTGNDV 447
L++++F+ + + S + E Y P+D Y G++ +TG+D+
Sbjct: 201 LQKVRFITDTRSKGETKFMGVCQLPSENDENEYPHRRIDIRLIPKDQYYCGVLYFTGSDI 260
Query: 448 LNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPH 507
N+ +R A KG+ +++ + P G GV A L D+E+++FD++ + + EP
Sbjct: 261 FNKNMRAHALEKGFTINEYTIRPL-----GVTGV-AGEPLPVDSEQDIFDYIQWRYREPK 314
Query: 508 ERN 510
+R+
Sbjct: 315 DRS 317
>gi|449505804|ref|XP_002192856.2| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase lambda [Taeniopygia
guttata]
Length = 503
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 127/415 (30%), Positives = 208/415 (50%), Gaps = 35/415 (8%)
Query: 24 VFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLA---MDLEALLQQVSKQHLAR 80
++++ G+ R +I+R+++VQ G V +LS +VTHV+ MD E + + L R
Sbjct: 46 AYVLQAGIGQTRAEIFRRQIVQNGGVVHRQLSSEVTHVIVAEDMDCERAFRLLRLTKL-R 104
Query: 81 FKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGEN-----IADRVLSQIQGNGNTSSDG 135
+++ WL +R + +S Y + + N + LS + N N +S
Sbjct: 105 PGLQLVKAAWLSACIRDQKLLSTAGYGVFIPHRYANATLPCLPAFPLSXTEQNYNLTSAQ 164
Query: 136 E----------SSHRKKIKSSTEDVEHFQAE---------SKGDVETNALSEAPNSPMSS 176
+ K STE ++ E ++GD+E AL SS
Sbjct: 165 NLGLQLLAAPPPAEEGAAKPSTESQKYSDDEDSEGEDAGVTQGDLE--ALISGHYPVKSS 222
Query: 177 ESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSY 236
E ++++ T + P S + S + N+ ITE L Y G+ R+ Y
Sbjct: 223 EEISDSSYTVAQPP---SKWVCAQSSNTKKENHNQCITEKLEVLAKAYSVQGDKWRALGY 279
Query: 237 YKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISL 296
KAI ++ + S + +PGIGK M + I EI+ +G L KL+H E V + L
Sbjct: 280 SKAINALKSYHKPVTSYQEACKIPGIGKRMAEKILEILESGHLRKLDHI--SESVPVLEL 337
Query: 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMER 356
F +WG G TAQ Y++G RTLDD++ + +LT Q +GLK++ D R+PR E ++E+
Sbjct: 338 FSNIWGAGVKTAQMWYQQGFRTLDDIRTKATLTSQQAVGLKHYTDFLERMPREEAAEIEQ 397
Query: 357 LLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLK 411
+++A + P ++ + GSYRRGKA+CGD+DV++ HPD +SH+G SK + L+
Sbjct: 398 TVRQAALALKPGLVCVACGSYRRGKATCGDVDVLVTHPDGQSHRGVFSKLLNSLR 452
>gi|114632451|ref|XP_001170157.1| PREDICTED: DNA polymerase lambda isoform 17 [Pan troglodytes]
gi|410219294|gb|JAA06866.1| polymerase (DNA directed), lambda [Pan troglodytes]
gi|410307614|gb|JAA32407.1| polymerase (DNA directed), lambda [Pan troglodytes]
Length = 483
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 101/283 (35%), Positives = 155/283 (54%), Gaps = 25/283 (8%)
Query: 251 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 310
E + +PGIGK M + I EI+ +G L KL+H + V + LF +WG G TAQ
Sbjct: 202 EETQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SDSVPVLELFSNIWGAGTKTAQM 259
Query: 311 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 370
Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA + ++
Sbjct: 260 WYQQGFRSLEDIRSQASLTTQQAVGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLL 319
Query: 371 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE-- 428
+ GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ + +
Sbjct: 320 CVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQ 379
Query: 429 ---------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTG 467
V P +A L+ +TG+ NR +R LA++KG L +
Sbjct: 380 KYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHA 439
Query: 468 LFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
L A + V L TEK+VF LG P+ EP ER+
Sbjct: 440 LSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 482
>gi|348578601|ref|XP_003475071.1| PREDICTED: DNA polymerase lambda-like isoform 2 [Cavia porcellus]
Length = 482
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 102/283 (36%), Positives = 152/283 (53%), Gaps = 26/283 (9%)
Query: 251 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 310
E + +PG+GK M + IQEI+ +G L KL+H E V + LF +WG G TAQ
Sbjct: 202 EGPQEACSIPGVGKRMAEKIQEILESGHLRKLDHI--SESVPVLQLFSSIWGAGTKTAQM 259
Query: 311 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 370
Y +G R+L+D++N SLT Q +GLK++ D R+PR E ++E+ + KA P ++
Sbjct: 260 WYHQGFRSLEDIRNLASLTAQQAIGLKHYSDFLERMPRDEAAEIEQTVSKAAYTCNPGLL 319
Query: 371 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE-- 428
+ GSYRRGK +CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ + +
Sbjct: 320 CVACGSYRRGKPTCGDVDVLITHPDGRSHRGVFSRLLDGLRQQGFLTDDLVSQEDNGQQQ 379
Query: 429 ---------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTG 467
V P +A L+ +TG+ NR +R LA++KG L +
Sbjct: 380 KYLGVCRLPGPRRRHRRLDIIVVPYGEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHA 439
Query: 468 LFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
L G + V L TEK+VF LG P+ EP ER+
Sbjct: 440 LSTVIRNPRGLK-VGPGQVLPTPTEKDVFRLLGLPYREPAERD 481
>gi|387015596|gb|AFJ49917.1| DNA polymerase beta-like [Crotalus adamanteus]
Length = 335
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 114/329 (34%), Positives = 181/329 (55%), Gaps = 34/329 (10%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 268
N+ IT++ +L N + + + +Y KA VI K P KI+S + K L GIG + +
Sbjct: 12 NQAITDLLSELANYEKNVNRAIHKYNAYRKAASVISKYPSKIKSGSEAKKLDGIGTKIAE 71
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDS 327
I E ++TGKL K+E +D+ +I+L V GIGPA A+KL ++G +TL+DL KNE
Sbjct: 72 KIDEFLSTGKLRKIEKIRQDDTSSSINLLTRVSGIGPAAARKLVDEGIKTLEDLKKNEHK 131
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 387
L H QR+GLKYF D + RIPR E+ +M+ ++ +V P I GS+RRG S GD+
Sbjct: 132 LNHHQRIGLKYFKDFEKRIPRKEMLEMQDVVLSEVNKVDPAYIATVCGSFRRGAESSGDM 191
Query: 388 DVVIMHPDRKSHKG----FLSKYVKKLKEMKFLR--------------------EDLIFS 423
D+++ HPD S L + V++L+ + F+ +D+I+
Sbjct: 192 DILLTHPDFTSESAKKPKLLHQVVEQLESICFVTDTLSKGETKFMGVCQLPSRDDDIIYP 251
Query: 424 THSEEV--YPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGV 481
++ P+D Y G++ +TG+D+ N+ +R A G+ L++ + P G GV
Sbjct: 252 YRRIDIRLIPKDQYYCGVLYFTGSDLFNKNMRAHALEMGFTLNEYTIRPL-----GVTGV 306
Query: 482 RARTSLKFDTEKEVFDFLGFPWLEPHERN 510
A L D+EK++FD+L + + EP ER+
Sbjct: 307 -AGEPLPVDSEKDIFDYLQWQYREPKERS 334
>gi|302926226|ref|XP_003054252.1| hypothetical protein NECHADRAFT_74784 [Nectria haematococca mpVI
77-13-4]
gi|256735193|gb|EEU48539.1| hypothetical protein NECHADRAFT_74784 [Nectria haematococca mpVI
77-13-4]
Length = 818
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 109/335 (32%), Positives = 176/335 (52%), Gaps = 36/335 (10%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N E+ + + Y + + R+ +Y K I +++ K+ +A++ + LP IG + +
Sbjct: 483 NARTIEVLQSMADYYDRINDHWRTTAYRKVISTLKRQDTKVTTAEEAQRLPSIGTRLAEK 542
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EIVTT +L +LE+ +K+ + LF ++G+G + AQ+ +G RTLDDLK + L+
Sbjct: 543 IEEIVTTDRLRRLEYTQKEPMDEALQLFLGIYGVGTSQAQQWLAQGFRTLDDLKAKAKLS 602
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+Q LG++++DD+ TRIPR EVE + +++K ++V P V ++ GGSYRRG + GD+D
Sbjct: 603 PNQLLGIEHYDDLNTRIPRREVEALGTVVRKGAQQVDPNVELIIGGSYRRGAETSGDIDF 662
Query: 390 VIMHPDRKSH---KGFLSKYVKKLKEMKFLREDLIFST--------HSEEVYPRDIYAF- 437
+I P+ +S + FL V +L+ FL L S H V P+ I F
Sbjct: 663 IITKPNTESSSELRPFLDDLVHRLEAQGFLVARLASSRSASDGSKWHGCCVLPK-INGFN 721
Query: 438 -----------------------GLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYG 474
L+ +TGND+ NR +RLLA KG RL+ GL+
Sbjct: 722 DGNYQPIWRRIDFLLVPETEIGAALLYFTGNDIFNRSIRLLASKKGMRLNQRGLYKDVMR 781
Query: 475 SGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ V ++ E+ +F+ LG W EPHER
Sbjct: 782 GPQRVKVTEGELVEGRDERRIFEILGVKWREPHER 816
>gi|241846261|ref|XP_002415548.1| DNA polymerase lambda, putative [Ixodes scapularis]
gi|215509760|gb|EEC19213.1| DNA polymerase lambda, putative [Ixodes scapularis]
Length = 477
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 147/528 (27%), Positives = 235/528 (44%), Gaps = 90/528 (17%)
Query: 18 IFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVS 74
+F G RV++V G+ R+Q++ +KLV+ GA + + K THV+ +D E L + +
Sbjct: 1 MFVGSRVYVVPTGMGKPRVQLFLKKLVEHGAEIADS-EKDATHVVVAECVDRERLPKLID 59
Query: 75 KQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSD 134
+ L+ ++R W+ DSL+ S Y + D E + VL+ + +
Sbjct: 60 SKKLSP-STRIVRSAWISDSLKNASLASTMPYALTCDLPHE-CGETVLNSDCAGPSGAEV 117
Query: 135 GESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSS 194
G + H K+ P P E
Sbjct: 118 GAADHGKE---------------------------PEEPARKECADV------------- 137
Query: 195 HHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESAD 254
P + N +I E ++ Y++ + R+ SY +AI +++ P +I S +
Sbjct: 138 -----------PVNRNVHIIEQLQAMVETYQSTKDHWRALSYERAIMALKRHPTEITSWE 186
Query: 255 QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK 314
+ + LP +G+ + D I EIV GKL KLE F+ E++ + LF ++WG GP+TA++ +
Sbjct: 187 EARSLPKVGERLADKIWEIVERGKLRKLEEFQGQERLTALQLFTKIWGSGPSTAERWVHQ 246
Query: 315 GHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCG 374
G TL++L + LT Q++GLK+F D ++PR E ++ + KA + P + ++
Sbjct: 247 GFTTLEELASSGQLTGQQKIGLKHFHDFLEKMPREEAGEIADTVAKAALSLQPGLTVVPC 306
Query: 375 GSYRRGKASCGDLDVVIMHPDRKS-------------HKGFLSKYVK-------KLKEMK 414
GSYRRGK+ CGD+DV+I H + + GFL+ + K M
Sbjct: 307 GSYRRGKSMCGDVDVLISHAELSALDGLLNRLLQLLRSSGFLTDGLAVPHGTGVPSKYMG 366
Query: 415 FLREDLIFSTHSEE---VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPA 471
R D S H V P D A L+A+TG+ NR LRL A G L D GL
Sbjct: 367 VCRIDRPGSKHRRLDVFVIPPDELACALLAYTGSAHFNRSLRLRARRMGMALSDRGLRQG 426
Query: 472 TY---GSGGKQGV------RARTSL-KFDTEKEVFDFLGFPWLEPHER 509
+ G G G R+ SL TE + + LG + P +R
Sbjct: 427 VWRKVGIGSHTGFPRGAEKRSLGSLVSTPTEASILEHLGLSYRPPEQR 474
>gi|301765968|ref|XP_002918406.1| PREDICTED: DNA polymerase beta-like [Ailuropoda melanoleuca]
Length = 335
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 113/330 (34%), Positives = 183/330 (55%), Gaps = 34/330 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+ G S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFXXGAESSGD 190
Query: 387 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL------------IFSTHSEEVY 430
+DV++ HP S L + V++L+++ F+ + L + S + E+ Y
Sbjct: 191 MDVLLTHPSFTSESTKQPKLLHRVVEQLQKVHFITDTLSKGDTKFMGVCQLPSKNDEKEY 250
Query: 431 ----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P G G
Sbjct: 251 PHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTG 305
Query: 481 VRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
V A L D+EK++FD++ + + EP +R+
Sbjct: 306 V-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|395857477|ref|XP_003801118.1| PREDICTED: DNA polymerase beta [Otolemur garnettii]
Length = 335
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 112/330 (33%), Positives = 184/330 (55%), Gaps = 34/330 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPDRKS----HKGFLSKYVKKLKEMKFLREDLI-----------FSTHSEE--- 428
+DV++ HP S L + V++L+++ F+ + L +S+E
Sbjct: 191 MDVLLTHPSFTSESPKQPKLLHRVVEQLQKVLFITDTLSKGETKFMGVCQLPRNSDEREY 250
Query: 429 --------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
+ P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P G G
Sbjct: 251 PHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTG 305
Query: 481 VRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
V A L D+E+++F+++ + + EP +R+
Sbjct: 306 V-AGEPLPVDSERDIFEYIQWKYREPKDRS 334
>gi|113812195|gb|AAH03548.2| POLL protein [Homo sapiens]
gi|119570145|gb|EAW49760.1| polymerase (DNA directed), lambda, isoform CRA_d [Homo sapiens]
Length = 300
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 101/275 (36%), Positives = 153/275 (55%), Gaps = 25/275 (9%)
Query: 259 LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRT 318
+PGIGK M + I EI+ +G L KL+H E V + LF +WG G TAQ Y++G R+
Sbjct: 27 IPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRS 84
Query: 319 LDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYR 378
L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA + ++ + GSYR
Sbjct: 85 LEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYR 144
Query: 379 RGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE---------- 428
RGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ + +
Sbjct: 145 RGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRL 204
Query: 429 -------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS 475
V P +A L+ +TG+ NR +R LA++KG L + L A +
Sbjct: 205 PGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRN 264
Query: 476 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
V L TEK+VF LG P+ EP ER+
Sbjct: 265 THGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 299
>gi|49257724|gb|AAH74537.1| polymerase (DNA directed), beta [Xenopus (Silurana) tropicalis]
Length = 334
Score = 184 bits (468), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 115/329 (34%), Positives = 179/329 (54%), Gaps = 33/329 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN+ IT+ +L N R + + +Y KA VI K P KI+S + K L G+G +
Sbjct: 11 LNEGITDFLVELANYERNVNRAIHKYNAYRKAASVIAKYPSKIKSGTEAKKLDGVGAKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NED 326
+ I E + TGKL KLE +D+ +I+ V GIGPA A+KL ++G +TLDDL+ NE
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPAAARKLVDEGIKTLDDLRNNEH 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H Q++GLKYFDD + RI R E+ QM+ + + + P+ I GS+RRG S GD
Sbjct: 131 KLNHHQKIGLKYFDDFEKRITRKEMIQMQEKVIDRIKILDPQYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLI-----------FSTHSEE--- 428
+DV++ HPD S L + V+ L+E +F+ + L+ +E
Sbjct: 191 MDVLLTHPDFTSESAKQPHLLRQVVQCLEECEFITDTLVKGDTKFMGVCQLPCEGDEEHP 250
Query: 429 -------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGV 481
+ P+D Y G++ +TG+D+ N+ +R A KG+ L++ L P G G+
Sbjct: 251 HRRLDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTLNEYTLRPL-----GVTGI 305
Query: 482 RARTSLKFDTEKEVFDFLGFPWLEPHERN 510
A L D+EK++FD++ + + EP +R+
Sbjct: 306 -AGEPLPIDSEKDIFDYIQWKYREPKDRS 333
>gi|55845900|gb|AAV66968.1| DNA polymerase beta [Canis lupus familiaris]
Length = 318
Score = 184 bits (467), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 109/303 (35%), Positives = 172/303 (56%), Gaps = 33/303 (10%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
+Y KA VI K P KI+S + K LPG+G + + I E + TGKL KLE +D+ +I
Sbjct: 21 AYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSI 80
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQ 353
+ V GIGP+ A+K ++G +TL+DL KNED L H QR+GLKYF+D + RIPR E+ Q
Sbjct: 81 NFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFEDFEKRIPREEMLQ 140
Query: 354 MERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKG----FLSKYVKK 409
M+ ++ ++V E I GS+RRG S GD+DV++ HP S L + V++
Sbjct: 141 MQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESAKQPKLLHRVVEQ 200
Query: 410 LKEMKFLREDL------------IFSTHSEEVY----------PRDIYAFGLIAWTGNDV 447
L+++ F+ + L + S + E+ Y P+D Y G++ +TG+D+
Sbjct: 201 LQKVHFITDTLSKGETKFMGVCQLPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDI 260
Query: 448 LNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPH 507
N+ +R A KG+ +++ + P G GV A L D+EK++FD++ + + EP
Sbjct: 261 FNKNMRAHALEKGFTINEYTIRPL-----GVTGV-AGEPLPVDSEKDIFDYIQWKYREPK 314
Query: 508 ERN 510
+R+
Sbjct: 315 DRS 317
>gi|342879714|gb|EGU80951.1| hypothetical protein FOXB_08510 [Fusarium oxysporum Fo5176]
Length = 808
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 103/334 (30%), Positives = 173/334 (51%), Gaps = 34/334 (10%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N E+ + + Y + + R+ +Y K I +++ KI +A++ + LP +G +
Sbjct: 473 NSRTIEVLQSMADYYTRVNDHWRTTAYRKVISTLKRQETKITTAEEAQRLPSVGPRLAQK 532
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EIVTT +L +LE+ +K+ + LF ++G+G + AQ+ +G RTLDDLK L+
Sbjct: 533 IEEIVTTDRLQQLEYAQKEPMDEALQLFLGIYGVGNSQAQQWLAQGFRTLDDLKTNAKLS 592
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+Q +G++++DD+ TRIPR E+E + ++++ + V P+V ++ GGSYRRG + GD+D
Sbjct: 593 PNQLVGIEHYDDLNTRIPRREIEALGAIVRRGAQRVDPQVELIIGGSYRRGAETSGDIDF 652
Query: 390 VIMHPDRKSH---KGFLSKYVKKLKEMKFLREDLIFSTHSEE------------------ 428
+I + +S + FL V++L+ FL L S + +
Sbjct: 653 IITKSNTESSAELRPFLDSLVQRLEAEDFLVARLASSRSASDGSKWHGCCVLPKISGFNK 712
Query: 429 -------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS 475
+ P LI +TGND+ NR +RLLA KG RL+ GL+
Sbjct: 713 EHYRPVWRRIDFLLVPESEMGAALIYFTGNDIFNRSMRLLASKKGMRLNQRGLYKDVMRG 772
Query: 476 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ V ++ E+++FD LG W EPHER
Sbjct: 773 PQRVKVTEGELVEGRNERKIFDILGVKWREPHER 806
>gi|336463231|gb|EGO51471.1| hypothetical protein NEUTE1DRAFT_88906 [Neurospora tetrasperma FGSC
2508]
gi|350297570|gb|EGZ78547.1| hypothetical protein NEUTE2DRAFT_154936 [Neurospora tetrasperma
FGSC 2509]
Length = 806
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 103/312 (33%), Positives = 165/312 (52%), Gaps = 12/312 (3%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N E+ + + Y + + R+ +Y KAI +++ +I +AD+ LP IGK + +
Sbjct: 493 NARTIEVLQSMCDYYSRVSDQWRTTAYRKAIATLKRQNTRITTADEAHHLPSIGKRLAEK 552
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EIVTT L +LE+ + ++ F +++ +G A K +G RTLDDLK + +LT
Sbjct: 553 IEEIVTTDSLRRLEYAQASPLDHVLATFLKIYDVGNGRANKWISQGFRTLDDLKQKANLT 612
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
H+QR+G+ Y++D+ TRIPR EV + ++K ++ P V +L GGSYRRG S D+D
Sbjct: 613 HNQRIGVDYYEDLNTRIPRSEVTAIGDYIKKEAAQIDPAVELLIGGSYRRGAESSRDVDF 672
Query: 390 VIMHPDRKSHKGFLSKYVKKLKEM--KFLREDLIFSTHSEE----------VYPRDIYAF 437
+I + S + + + LK + K + + H+ + P Y
Sbjct: 673 IITKKNTTSSADLVPFFERLLKVLTDKGCVVATLSALHANRKGKDGPGNFLLVPETEYGA 732
Query: 438 GLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFD 497
LI +TGND+ NR +RLLA KG RL+ GL+ G+ V ++ E+ +F+
Sbjct: 733 ALIYFTGNDIFNRSMRLLASKKGMRLNQRGLYKEVMRGRGRVKVTEGQLVEGRDERRIFE 792
Query: 498 FLGFPWLEPHER 509
LG W EP ER
Sbjct: 793 ILGVKWREPEER 804
>gi|118101412|ref|XP_424407.2| PREDICTED: DNA polymerase beta [Gallus gallus]
Length = 335
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 112/330 (33%), Positives = 179/330 (54%), Gaps = 34/330 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN+ IT+ +L N R + + +Y KA VI + P +I S + K L G+G +
Sbjct: 11 LNQGITDFLMELANYERNVSRAIHKYNAYRKAASVISRYPSRIRSGAEAKKLDGVGAKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E ++TGKL KLE +D+ +I+ V GIGPA A+K E+G +TL+DL KNE
Sbjct: 71 EKIDEFLSTGKLRKLEKIRQDDTSASINFLTRVTGIGPAAARKFVEEGIKTLEDLRKNEH 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
LTH QR+GLKYF+D + RIPR E+ QM+ ++ K + V P I GS+RRG S GD
Sbjct: 131 KLTHHQRIGLKYFEDFEKRIPREEMLQMQEIVLKEVKNVDPNYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFL-------------------REDLIFS 423
+DV++ HP S L + +++L+++ F+ +ED
Sbjct: 191 MDVLLTHPTFTSESSKQSKLLHQVIEQLEKVHFVTDVLSKGDTKFMGVCQLPNKEDGTLY 250
Query: 424 THSE---EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
H + P+D Y G++ +TG+D+ N+ +R A G+ +++ + P G G
Sbjct: 251 PHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRTHALEMGFTINEYTIRPL-----GVTG 305
Query: 481 VRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
V A +L + EK++FD++ + + EP +R+
Sbjct: 306 V-AGEALPVECEKDIFDYIQWKYREPKDRS 334
>gi|346320323|gb|EGX89924.1| DNA polymerase POL4 [Cordyceps militaris CM01]
Length = 796
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 103/322 (31%), Positives = 171/322 (53%), Gaps = 25/322 (7%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N E+ +++ Y + R +Y KAI +++ P +I + ++ LPG+G +
Sbjct: 475 NARTVEVLQSMLSYYERTSDQWRVLAYRKAIATLKRQPARISTENEALRLPGVGARLAAK 534
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I EI TT +L +LEH ++D + + LF V G+GPA A + +G RTL+D++ + LT
Sbjct: 535 IAEIATTDRLRRLEHAQRDGSDQVLKLFLGVHGVGPALAARWAARGMRTLEDVRRQVKLT 594
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
Q++G++ + D+ T+IPR EVE + +++Q V V ++ GGSYRRG S GD+D+
Sbjct: 595 AGQQMGMERYADLNTKIPRDEVEALAKVVQDEAARVDDAVQLIVGGSYRRGAPSSGDVDM 654
Query: 390 VIMHPDRKSHKG----FLSKYVKKLKEMKFL------------------REDLIFSTHSE 427
+I P +H+ FL + V++L++ F+ R D ++
Sbjct: 655 IISKPS-TTHRSELLPFLQELVRRLRDAGFIVATLAADGSIWQGCCVLPRGDGVWRRMDM 713
Query: 428 EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSL 487
+ P LI +TG+DV NR +RLLA KG++L+ GL+ G G + G L
Sbjct: 714 LLVPAAEMGAALIYFTGDDVFNRSMRLLARKKGWKLNQKGLWKRDGGIGMETG--QEDLL 771
Query: 488 KFDTEKEVFDFLGFPWLEPHER 509
+ E+ +F+ LG W EP +R
Sbjct: 772 EGRCERRIFELLGVTWREPTQR 793
>gi|426256602|ref|XP_004021927.1| PREDICTED: DNA polymerase beta [Ovis aries]
Length = 328
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 108/303 (35%), Positives = 172/303 (56%), Gaps = 33/303 (10%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
+Y KA VI K P KI+S + K LPG+G + + I E + TGKL KLE +D+ +I
Sbjct: 31 AYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSI 90
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQ 353
+ V GIGP+ A+K ++G +TL+DL KNED L H QR+GLKYF+D + RIPR E+ Q
Sbjct: 91 NFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFEDFEKRIPREEMLQ 150
Query: 354 MERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKG----FLSKYVKK 409
M+ ++ ++V E I GS+RRG S GD+DV++ HP S L + V++
Sbjct: 151 MQDIVLSEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESAKQPKLLHRVVEQ 210
Query: 410 LKEMKFLREDL------------IFSTHSEEVY----------PRDIYAFGLIAWTGNDV 447
L++++F+ + L + + E+ Y P+D Y G++ +TG+D+
Sbjct: 211 LQKVRFITDTLSKGETKFMGVCQLPRKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDI 270
Query: 448 LNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPH 507
N+ +R A KG+ +++ + P G GV A L D+EK++FD++ + + EP
Sbjct: 271 FNKNMRAHALEKGFTINEYTIRPL-----GVTGV-AGEPLPVDSEKDIFDYIQWKYREPK 324
Query: 508 ERN 510
+R+
Sbjct: 325 DRS 327
>gi|46107476|ref|XP_380797.1| hypothetical protein FG00621.1 [Gibberella zeae PH-1]
Length = 810
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 109/334 (32%), Positives = 177/334 (52%), Gaps = 34/334 (10%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N E+ K+ + Y + + R+ +Y KAI +++ KI SA++ + LP +G +
Sbjct: 475 NARTIEVLQKMSDYYNRIDDHWRTTAYRKAISTLKRQETKITSAEEAQRLPSVGTRLAQK 534
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EIVTT +L +LE +K+ + LF ++G+G + AQ+ +G RTL+DLK + L+
Sbjct: 535 IEEIVTTDRLQRLEFAQKEPMDEALQLFLSIYGVGNSQAQQWLAQGFRTLEDLKAKAKLS 594
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+Q LG++++ D+ TRIPR EVE + ++++ + + PEV ++ GGSYRRG + GD+D+
Sbjct: 595 PNQSLGIEHYADLNTRIPRSEVEALGLVVKRTAQHIDPEVELIIGGSYRRGAETSGDIDL 654
Query: 390 VIMHPDRKSH---KGFLSKYVKKLKEMKFLREDLIFST--------HSEEVYPR------ 432
+I + +S + FL V++L+ FL L S H V P+
Sbjct: 655 IITKSNTESSADLRPFLDSLVQRLETEGFLVARLASSRSTSDGSKWHGCCVLPKVSGFSD 714
Query: 433 DIY-----------------AFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS 475
D Y L+ +TGND+ NR +RLLA KG RL+ GL+
Sbjct: 715 DDYKPVWRRIDFLLVPESERGAALLYFTGNDIFNRSMRLLASKKGMRLNQRGLYKDVMRG 774
Query: 476 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ V ++ E+++FD LG W EPHER
Sbjct: 775 PQRVKVTEGELVEGRDERKIFDILGVKWREPHER 808
>gi|380487011|emb|CCF38321.1| hypothetical protein CH063_09433 [Colletotrichum higginsianum]
Length = 824
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 105/334 (31%), Positives = 170/334 (50%), Gaps = 34/334 (10%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N EI ++ N Y + + R +Y KAI +++ P KI +A + LPG+G+ + D
Sbjct: 489 NGRTIEILQQMCNYYERINDTWRPIAYRKAITQLKRQPNKISTAKEAIRLPGVGQRLADK 548
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EIVTT +L +LE+ E++ + +F ++G+G A +G RTL+DLK + LT
Sbjct: 549 IEEIVTTNRLQRLENAEQEPMDEILQIFLRIYGVGSIQASHFISQGFRTLEDLKEKARLT 608
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+QR+G+ ++DD+ TRIPR E+E + +++ ++ P V ++ GGSYRRG GD+D
Sbjct: 609 PNQRIGIDHYDDLNTRIPRSEIELLGAVVRSEAAKLDPAVQLIIGGSYRRGADDSGDIDF 668
Query: 390 VIMHPDRKSHK---GFLSKYVKKLKEMKFLREDLIFSTHSEE------------------ 428
++ ++ FL + VK L+ +FL L S +
Sbjct: 669 LVTKKGTRATSELVPFLHQLVKTLETQEFLVARLAGSREESDGSKWHGCCVLPETRGVND 728
Query: 429 -------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS 475
+ P LI +TGND+ NR +RLLA KG RL+ GL+
Sbjct: 729 ENYRRVWRRVDFLLVPETEMGAALIYFTGNDIFNRSIRLLASKKGMRLNQRGLYKDVMRG 788
Query: 476 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
G+ + ++ E+++F+ LG W EPHER
Sbjct: 789 PGRVKLTEGELVEGQDERKIFEILGVKWREPHER 822
>gi|327287112|ref|XP_003228273.1| PREDICTED: DNA polymerase beta-like [Anolis carolinensis]
Length = 335
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 113/329 (34%), Positives = 180/329 (54%), Gaps = 34/329 (10%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 268
N IT+ +L N R + + +Y KA VI K P KI+S + K L G+G + +
Sbjct: 12 NDGITDFLTELANYERNVNRAIHKYNAYRKAASVISKYPSKIKSGAEAKKLDGVGAKIAE 71
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDS 327
I E ++TGKL KLE +D+ +I+ V GIGPA A+K ++G +TL+DL KNE
Sbjct: 72 KIDEFLSTGKLRKLEKIRQDDTSSSINFLTRVSGIGPAAARKFVDEGIKTLEDLKKNEHK 131
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 387
L H Q++GLKYF+D + RIPR+E+ +M+ ++ +EV I GS+RRG S GD+
Sbjct: 132 LNHHQQIGLKYFEDFEKRIPRNEMLEMQEIVLNEVKEVDSRYIATVCGSFRRGAESSGDM 191
Query: 388 DVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL---------IFSTHSEE------ 428
D+++ HPD S L + V +L++ +F+ + L + S+E
Sbjct: 192 DILLTHPDFTSESSKQPKLLHQVVDQLEKARFVTDTLSKGDTKFMGVCQLPSKEDGTDYP 251
Query: 429 -------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGV 481
+ P+D Y G++ +TG+D+ N+ +R A KG+ L++ L P G GV
Sbjct: 252 YRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRTHALEKGFTLNEYTLRPV-----GVTGV 306
Query: 482 RARTSLKFDTEKEVFDFLGFPWLEPHERN 510
A L D+EK++FD++ + + EP +R+
Sbjct: 307 -AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|408394188|gb|EKJ73422.1| hypothetical protein FPSE_06415 [Fusarium pseudograminearum CS3096]
Length = 814
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 109/335 (32%), Positives = 178/335 (53%), Gaps = 36/335 (10%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N E+ K+ + Y + + R+ +Y KAI +++ KI SA++ + LP +G +
Sbjct: 479 NARTIEVLQKMSDYYSRIDDHWRTTAYRKAISTLKRQETKITSAEEAQRLPSVGTRLAQK 538
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EIVTT +L +LE+ +K+ + LF ++G+G + AQ+ +G RTL+DLK + L+
Sbjct: 539 IEEIVTTDRLQRLEYAQKEPMDEALQLFLGIYGVGNSQAQQWLAQGFRTLEDLKAKAKLS 598
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+Q LG++++ D+ TRIPR EVE + +++++ + + PEV ++ GGSYRRG + GD+D+
Sbjct: 599 PNQSLGIEHYADLNTRIPRSEVEALGLVVKRSAQHIDPEVELIIGGSYRRGAETSGDIDL 658
Query: 390 VIMHPDRKSH---KGFLSKYVKKLKEMKFLREDLIFST--------HSEEVYPRDIYAF- 437
+I + +S + FL V++L+ FL L S H V P +I F
Sbjct: 659 IITKSNTESSADLRPFLDSLVQRLETEGFLVARLASSRSDSDGSKWHGCCVLP-EISGFS 717
Query: 438 -----------------------GLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYG 474
L+ +TGND+ NR +RLLA KG RL+ GL+
Sbjct: 718 DDDYKPVWRRIDFLLVPESERGAALLYFTGNDIFNRSMRLLASKKGMRLNQRGLYKDVMR 777
Query: 475 SGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ V ++ E+ +FD LG W EPHER
Sbjct: 778 GPQRVKVTEGELVEGRDERRIFDILGVKWREPHER 812
>gi|34538970|gb|AAQ74388.1| DNA polymerase lamda2 [Homo sapiens]
Length = 483
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 101/283 (35%), Positives = 153/283 (54%), Gaps = 25/283 (8%)
Query: 251 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 310
E + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G TAQ
Sbjct: 202 EETQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQM 259
Query: 311 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 370
Y++G R+L+D++++ LT Q +GLK++ D R+PR E ++E+ +QKA + ++
Sbjct: 260 WYQQGFRSLEDIRSQAFLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLL 319
Query: 371 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE-- 428
+ GSYRRGKA+CGD+DV+I HPD SH+G S+ + L++ FL +DL+ + +
Sbjct: 320 CVACGSYRRGKATCGDVDVLITHPDGWSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQ 379
Query: 429 ---------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTG 467
V P +A L+ +TG+ NR +R LA++KG L +
Sbjct: 380 KYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHA 439
Query: 468 LFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
L A + V L TEK+VF LG P+ EP ER+
Sbjct: 440 LSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 482
>gi|330800723|ref|XP_003288383.1| hypothetical protein DICPUDRAFT_33968 [Dictyostelium purpureum]
gi|325081565|gb|EGC35076.1| hypothetical protein DICPUDRAFT_33968 [Dictyostelium purpureum]
Length = 370
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 112/332 (33%), Positives = 180/332 (54%), Gaps = 36/332 (10%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
NK +T+I +L + G+ R +Y KA+ I+ P +I+S + + L G+G +
Sbjct: 45 NKQLTDILTELSVFEKNKGQVHRFTAYRKAVLSIKAYPHEIKSGLEAQKLDGVGAKIAKK 104
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-EDSL 328
I EI+ TG L KL+ +DE + I+ V GIGP A+ L E+G +T+DDLK +++L
Sbjct: 105 IDEILKTGDLKKLKSQNQDETLTAINQLSRVTGIGPQKAKSLVEEGIKTIDDLKKIKNTL 164
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
TH Q++GLKYF + + R+PR E+E E+L+ + + P +I GSYRRG S GD+D
Sbjct: 165 THHQQIGLKYFSEFEQRVPRKEIEVFEKLVSNSLFSIDPNIISQVCGSYRRGLESSGDID 224
Query: 389 VVIMHP-------DRKSHKGFLSKYVKKLKEMKFLREDL------------IFSTHSEE- 428
++I HP D+K + K V+ LK+ L +DL + ST E
Sbjct: 225 ILISHPNFTLEMKDKKKTFNIIEKLVESLKKKHILIDDLSLGPLKYMGVCKLVSTEISEQ 284
Query: 429 ---------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQ 479
+ P + Y FGL+ TG+D NR++R +A +G+ L + + + +
Sbjct: 285 HIARRIDFKLIPYESYYFGLLHNTGSDEFNRQMRGIALKQGFTLSEYSINKLS------K 338
Query: 480 GVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 511
GV+ T + ++EKE+FD +G + P++RNL
Sbjct: 339 GVKNETPILVNSEKEIFDIIGMEYYPPNKRNL 370
>gi|134076871|emb|CAK45280.1| unnamed protein product [Aspergillus niger]
Length = 705
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 107/335 (31%), Positives = 168/335 (50%), Gaps = 30/335 (8%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 264
N + N I ++++ Y + R +Y KAI + + P KI + Q +PGIG+
Sbjct: 369 NSENPNSKTIAILQQMLDYYTRTNDHWRVLAYRKAISALRRQPHKITTKSQALAIPGIGQ 428
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN 324
+ D IQEIV T +L +LE+ + + + LF ++G+G A + +G++TL+DLK+
Sbjct: 429 RLADKIQEIVLTNRLRRLENANNSPEDQVLQLFTGIYGVGINQASRWLAQGYKTLEDLKS 488
Query: 325 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 384
+ +LT +QR+G+ ++DD RIPR EVE +++KA + P++ ++ GSYRRG C
Sbjct: 489 KANLTPNQRIGVDHYDDFAQRIPRSEVEAHGEIVRKAVQTADPDMQVIIAGSYRRGAPDC 548
Query: 385 GDLDVVIMHPDRK---SHKGFLSKYVKKLKEMKFLREDLIFST-------HSEEVYP--- 431
GD+D++I PD + + V KL + FL+ L S+ H P
Sbjct: 549 GDIDLLITKPDAEIDHIRTIMMGSVVPKLLKQGFLQTSLASSSSRDGSKWHGACTLPDND 608
Query: 432 --------RDI---------YAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYG 474
R I LI +TGND+ NR +RLLA KG RL+ GL+
Sbjct: 609 EDRITRPWRRIDLLFVPDAEIGAALIYFTGNDIFNRSMRLLASKKGMRLNQRGLYTDVLR 668
Query: 475 SGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ + L+ E+ +FD LG PW P R
Sbjct: 669 GPQRVKINEGRLLEGHDERRIFDILGVPWRPPEHR 703
>gi|63101370|gb|AAH95054.1| Polymerase (DNA directed), beta [Danio rerio]
gi|182890442|gb|AAI64375.1| Polb protein [Danio rerio]
Length = 339
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 117/334 (35%), Positives = 177/334 (52%), Gaps = 38/334 (11%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN+ IT+ +L N R + + +Y KA VI K P KI+S + K L G+G +
Sbjct: 11 LNEGITDFLVELANYERNVNRAIHKYNAYRKAASVIAKYPQKIKSGTEAKKLDGVGAKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-ED 326
+ I E +TTGKL KLE D+ +I+ V GIGPA A+K +++G R L+DLK E
Sbjct: 71 EKIDEFLTTGKLRKLEKIRNDDTSSSINFLTRVTGIGPAAARKFFDEGVRNLEDLKKIEH 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H Q++GLKYF++ + RIPR E+++ME L+ K + V PE I GSYRRG S GD
Sbjct: 131 KLNHHQQIGLKYFEEFEKRIPRSEMQKMEALILKELDIVDPEYIGTICGSYRRGAESSGD 190
Query: 387 LDVVIMHPDRKSHK----GFLSKYVKKLKEMKFLREDL---------------------- 420
+D+++ HPD S L V L+ + F+ + L
Sbjct: 191 IDILLTHPDFTSQSEKQPKLLHAVVDHLESIGFITDTLSKGDTKFMGVCQLQKEKEEEEE 250
Query: 421 -IFSTHSE---EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSG 476
S H + P+D Y G++ +TG+D+ N+ +R A KG+ L++ + P
Sbjct: 251 EEESLHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRTHALEKGFTLNEYTIRPL----- 305
Query: 477 GKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
G GV A L D+EK++FD++ + + EP +R+
Sbjct: 306 GVTGV-AGEPLLVDSEKDIFDYIQWKYREPKDRS 338
>gi|164424229|ref|XP_963912.2| hypothetical protein NCU07461 [Neurospora crassa OR74A]
gi|157070429|gb|EAA34676.2| predicted protein [Neurospora crassa OR74A]
Length = 805
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 102/312 (32%), Positives = 166/312 (53%), Gaps = 12/312 (3%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N E+ + + Y + + R+ +Y KAI +++ +I +AD+ LP IGK + +
Sbjct: 492 NARTIEVLQSMCDYYSRVSDQWRTTAYRKAIATLKRQNTRITTADEAYHLPSIGKRLAEK 551
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EIVTT L +LE+ + ++ F +++ +G A K +G RTLDDLK + +LT
Sbjct: 552 IEEIVTTDSLRRLEYAQASPLDHVLATFLKIYDVGNGRANKWISQGFRTLDDLKQKANLT 611
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
H+QR+G+ +++D+ TRIPR EV + ++K ++ P V +L GGSYRRG S D+D
Sbjct: 612 HNQRIGVDHYEDLNTRIPRREVTAIGDYIKKEAAQIDPAVELLIGGSYRRGAESSRDVDF 671
Query: 390 VIMHPDRKSHKGFLSKYVKKLKEM--KFLREDLIFSTHSEE----------VYPRDIYAF 437
+I + S + + + LK + K + + H++ + P Y
Sbjct: 672 IITKKNTTSSADLVPFFERLLKVLTDKGCVVATLSALHADRKGKDGPGNFLLVPETEYGA 731
Query: 438 GLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFD 497
LI +TGND+ NR +RLLA KG RL+ GL+ G+ V ++ E+ +F+
Sbjct: 732 ALIYFTGNDIFNRSMRLLASKKGMRLNQRGLYKEVMRGRGRVKVTEGQLVEGRDERRIFE 791
Query: 498 FLGFPWLEPHER 509
LG W EP ER
Sbjct: 792 ILGVKWREPEER 803
>gi|340507938|gb|EGR33773.1| DNA-directed polymerase lambda, putative [Ichthyophthirius
multifiliis]
Length = 325
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 110/324 (33%), Positives = 174/324 (53%), Gaps = 33/324 (10%)
Query: 219 KLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGK 278
KL IY+ + R+ +Y +AI +++ +I+S + +K + GIG ++ IQEI+ G
Sbjct: 4 KLYQIYQQEKDLGRTIAYRRAISILQGHKQQIQSKEDIKKIKGIGDKIKLKIQEILQNGT 63
Query: 279 LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NEDSLTHSQRLGLK 337
K+++ DEK +I++ +VWGIG TA LY+KG +T++ LK N+ L +Q++GLK
Sbjct: 64 CEKIQNLINDEKNISINILSKVWGIGTNTAHILYKKGIKTIEQLKQNQHLLNKNQKIGLK 123
Query: 338 YFDDIKTRIPRHEVEQMERLLQKAGEEVLPEV-----IILCGGSYRRGKASCGDLDVVIM 392
Y+D++ R+ R E ++ + +Q+ + + P+ II C GSYRR K +CGD+D++I
Sbjct: 124 YYDELNKRMHREEATKIIQKVQEQIKILYPKQYDKYNIIAC-GSYRREKETCGDVDILIC 182
Query: 393 HPD--RKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE---------------------- 428
D + HK + +++L + L +DL +S +
Sbjct: 183 RNDFEQYKHKNLMITIIQQLHKCGLLTDDLALPKNSRQGVENYMGVCQLSSDQLHRRIDI 242
Query: 429 -VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSL 487
YP IY F LI +TG+D NR +RL A KG+ L D GLFP + V T
Sbjct: 243 KYYPNFIYGFALIYFTGSDYFNRSMRLFARKKGFSLSDNGLFPVQRCPNKVKVVSGETIC 302
Query: 488 KFDTEKEVFDFLGFPWLEPHERNL 511
+ TEK+VFD L + EP RNL
Sbjct: 303 CY-TEKDVFDALHLKYQEPKMRNL 325
>gi|348557620|ref|XP_003464617.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase beta-like [Cavia
porcellus]
Length = 335
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 111/330 (33%), Positives = 184/330 (55%), Gaps = 34/330 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLMELANFEKNVSQAIHKYNAYRKAASVIXKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLTEVKKLDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL------------IFSTHSEEVY 430
+DV++ H + S L + V++L+++ F+ + L + + E+ Y
Sbjct: 191 MDVLLTHANFTSESNKQPKLLHRVVEQLQKVHFITDTLSKGETKFMGVCQLPIKNDEKEY 250
Query: 431 ----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
P+D Y G++ +TG+D+ N+ +R A +G+ +++ + P G G
Sbjct: 251 PHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEQGFTINEYTIRPL-----GVTG 305
Query: 481 VRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
V A L D+EK++FD++ + + EP +R+
Sbjct: 306 V-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|317030862|ref|XP_001392360.2| DNA polymerase POL4 [Aspergillus niger CBS 513.88]
Length = 708
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 107/335 (31%), Positives = 168/335 (50%), Gaps = 30/335 (8%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 264
N + N I ++++ Y + R +Y KAI + + P KI + Q +PGIG+
Sbjct: 372 NSENPNSKTIAILQQMLDYYTRTNDHWRVLAYRKAISALRRQPHKITTKSQALAIPGIGQ 431
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN 324
+ D IQEIV T +L +LE+ + + + LF ++G+G A + +G++TL+DLK+
Sbjct: 432 RLADKIQEIVLTNRLRRLENANNSPEDQVLQLFTGIYGVGINQASRWLAQGYKTLEDLKS 491
Query: 325 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 384
+ +LT +QR+G+ ++DD RIPR EVE +++KA + P++ ++ GSYRRG C
Sbjct: 492 KANLTPNQRIGVDHYDDFAQRIPRSEVEAHGEIVRKAVQTADPDMQVIIAGSYRRGAPDC 551
Query: 385 GDLDVVIMHPDRK---SHKGFLSKYVKKLKEMKFLREDLIFST-------HSEEVYP--- 431
GD+D++I PD + + V KL + FL+ L S+ H P
Sbjct: 552 GDIDLLITKPDAEIDHIRTIMMGSVVPKLLKQGFLQTSLASSSSRDGSKWHGACTLPDND 611
Query: 432 --------RDI---------YAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYG 474
R I LI +TGND+ NR +RLLA KG RL+ GL+
Sbjct: 612 EDRITRPWRRIDLLFVPDAEIGAALIYFTGNDIFNRSMRLLASKKGMRLNQRGLYTDVLR 671
Query: 475 SGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ + L+ E+ +FD LG PW P R
Sbjct: 672 GPQRVKINEGRLLEGHDERRIFDILGVPWRPPEHR 706
>gi|350629528|gb|EHA17901.1| hypothetical protein ASPNIDRAFT_176678 [Aspergillus niger ATCC
1015]
Length = 708
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 107/335 (31%), Positives = 168/335 (50%), Gaps = 30/335 (8%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 264
N + N I ++++ Y + R +Y KAI + + P KI + Q +PGIG+
Sbjct: 372 NSENPNSKTIAILQQMLDYYTRTNDHWRVLAYRKAISALRRQPHKITTKSQALAIPGIGQ 431
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN 324
+ D IQEIV T +L +LE+ + + + LF ++G+G A + +G++TL+DLK+
Sbjct: 432 RLADKIQEIVLTNRLRRLENANNSPEDQVLQLFTGIYGVGINQASRWLAQGYKTLEDLKS 491
Query: 325 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 384
+ +LT +QR+G+ ++DD RIPR EVE +++KA + P++ ++ GSYRRG C
Sbjct: 492 KANLTPNQRIGVDHYDDFAQRIPRSEVEAHGEIVRKAVQTADPDMQVIIAGSYRRGAPDC 551
Query: 385 GDLDVVIMHPDRK---SHKGFLSKYVKKLKEMKFLREDLIFST-------HSEEVYP--- 431
GD+D++I PD + + V KL + FL+ L S+ H P
Sbjct: 552 GDIDLLITKPDAEIDHIRTIMMGSVVPKLLKQGFLQTSLASSSSRDGSKWHGACTLPDND 611
Query: 432 --------RDI---------YAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYG 474
R I LI +TGND+ NR +RLLA KG RL+ GL+
Sbjct: 612 EDRITRPWRRIDLLFVPDAEIGAALIYFTGNDIFNRSMRLLASKKGMRLNQRGLYTDVLR 671
Query: 475 SGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ + L+ E+ +FD LG PW P R
Sbjct: 672 GPQRVKINEGRLLEGHDERRIFDILGVPWRPPEHR 706
>gi|452987535|gb|EME87290.1| hypothetical protein MYCFIDRAFT_1485, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 563
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 102/324 (31%), Positives = 167/324 (51%), Gaps = 24/324 (7%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N+ I ++ + Y LG++ R +Y KAI + P K+ + +Q LP +G + +
Sbjct: 238 NEATINILQQMADYYGQLGDEWRIRAYRKAIATLRNHPVKVSTKEQAGALPNVGPRLAEK 297
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EI T +L +L++ + + + + + F V+G G A + E+G+ TLD+L + LT
Sbjct: 298 IEEIAFTNRLRRLDNAKAEPRDQVLQTFMGVYGAGLKKATEWVEQGYTTLDELMEKAELT 357
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+QR+G+++++D KTRIPR EV + ++++A E+ P ++ GGSYRRG A+ GD+D
Sbjct: 358 ENQRIGIEHYEDFKTRIPRAEVAEHGSIVRRALHEIDPAFEVIIGGSYRRGAATSGDIDC 417
Query: 390 VIMHPDRKS---HKGFLSKYVKKLKEMKFLREDLIFSTHSEE------------------ 428
+I PD L + V +L KFL L ++ +
Sbjct: 418 LITRPDTGPDHLRNIVLGQLVPRLTAAKFLVASLAITSRDDGSKWHGASCLPGSKIWRRL 477
Query: 429 ---VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRART 485
+ P D L+ WTGND+ NR LRLLA +KG RL+ GL+ + + T
Sbjct: 478 DLLLVPSDELGAALLYWTGNDIFNRSLRLLASTKGLRLNQRGLYKDVLRGKARVKLTDGT 537
Query: 486 SLKFDTEKEVFDFLGFPWLEPHER 509
++ EK++F LG PW P R
Sbjct: 538 LVEGKDEKKIFAALGVPWRPPEHR 561
>gi|118197144|dbj|BAF37047.1| DNA polymerase lambda [Coprinopsis cinerea]
Length = 800
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 112/335 (33%), Positives = 176/335 (52%), Gaps = 36/335 (10%)
Query: 210 NKNITEIFGKLINIYRALG--EDR-RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSM 266
N+++ + +L+ ++ A +DR R F+Y KAI + P +I S ++ + GIG
Sbjct: 464 NQDVIDKLTELMKLHEAKPSEDDRWRVFAYSKAIRALRSYPRRIRSLEEASKIRGIGSKT 523
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED 326
I EI+ TGKL ++E +E+ V +LF ++G+G +TA K Y G RTLDD++
Sbjct: 524 AQKIVEILETGKLRRIE-YERTGDVVAAALFQGIYGVGRSTAYKWYNAGCRTLDDIRQGK 582
Query: 327 S---LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKAS 383
L+ Q +GLKY+DDI +R+PR E + + +++ + P++ + GSYRRGKA+
Sbjct: 583 GGVKLSAVQEIGLKYYDDINSRMPREEAKAIYDIIKPIALSLDPKLFVEIMGSYRRGKAT 642
Query: 384 CGDLDVVIMHP--DRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE---VY-------- 430
CGD+D++I P D K+H G L + +++L + L EDL ++ VY
Sbjct: 643 CGDIDILITRPTDDGKTHAGVLGRLIQELHAVGVLTEDLALPEEIDDLEGVYRGLCRLPN 702
Query: 431 --------------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSG 476
P LI +TG+D+ NR +RL A GY L+ GLF
Sbjct: 703 VPNSKRRRIDFLTVPYHSRGAALIYYTGDDIFNRAMRLKANVMGYSLNQRGLFGNVVRDP 762
Query: 477 GKQGVRARTS--LKFDTEKEVFDFLGFPWLEPHER 509
+ V+ + +TE+E+F LG PW EPHER
Sbjct: 763 RDRRVKLNRGQIIASETEEEIFRILGVPWQEPHER 797
>gi|340372384|ref|XP_003384724.1| PREDICTED: DNA polymerase lambda-like [Amphimedon queenslandica]
Length = 581
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 110/340 (32%), Positives = 182/340 (53%), Gaps = 33/340 (9%)
Query: 201 SLLYNPPDLNKNITEIFGKLINIYR--ALGEDR-RSFSYYKAIPVIEKLPFKIESADQVK 257
S L+ + N+ +T +L+ Y+ +L +D+ R+ S KA+ +++ P +I + ++
Sbjct: 245 STLHAQVNHNEAVTSKLEELLLEYKNSSLPKDKWRAMSLTKAVAAVKRHPKEITTHEEAH 304
Query: 258 GLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHR 317
+P +GK + D I EIV++G L +L+H +K K I LF + G+G A++ Y +G+R
Sbjct: 305 SIPFVGKRLADKIYEIVSSGHLRRLDHIDK-AKQSVIDLFKGIHGVGQIVAEQFYAQGYR 363
Query: 318 TLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSY 377
TLDDLK + L Q++G KY+ + R+ R EVE++ER +++ + P + ++ GS+
Sbjct: 364 TLDDLKEANILNRQQQIGFKYYHEFAERMDRSEVEEIERKVREGCHLLDPNLEVVTCGSF 423
Query: 378 RRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE--------- 428
RRGK +CGD+D+++ HPD +SHKG ++ LK FL +DL + +
Sbjct: 424 RRGKPTCGDVDILVTHPDGRSHKGIFQPLIRVLKNDGFLTDDLTLHEDTSDGSCKYFGVC 483
Query: 429 ---------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATY 473
+ P Y L+ +TG+ NR LR A+ G L + L
Sbjct: 484 MLPGDGRKHRRIDIYICPYSEYPLMLLHFTGSGHFNRSLRSRADKMGMSLSEHSL---NA 540
Query: 474 GSGGKQGVRA--RTSLKFDTEKEVFDFLGFPWLEPHERNL 511
G K GV+ T L TE +VF +LG +LEPH+R+L
Sbjct: 541 GVVRKNGVKVFEGTPLPVFTEADVFKYLGVDYLEPHDRDL 580
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 14 DSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLA---MDLEALL 70
++N +F G+ +VE+G+ R +I ++L + G TV S+ +THV+ M L+
Sbjct: 11 EANSLFGGIVGLIVEQGLGKGRKRILEKQLEEKGGTVALSPSQTLTHVIVGPNMKYNRLV 70
Query: 71 QQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKL 110
+ + + +++ WL SL GE V Y + L
Sbjct: 71 SLLKLKDPLPPEVTIVTADWLSASLVAGESVDHTPYLLPL 110
>gi|348527146|ref|XP_003451080.1| PREDICTED: DNA polymerase beta-like [Oreochromis niloticus]
Length = 336
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 117/331 (35%), Positives = 177/331 (53%), Gaps = 35/331 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN+ IT+ +L N + + + +Y KA I K P KI+S ++ K L G+G +
Sbjct: 11 LNEGITDFLVELANYEKNVNRAIHKYNAYRKAASTISKYPHKIKSGEEAKKLDGVGAKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-ED 326
+ I E + TGKL KLE D+ +I+ V GIGPA A+K E+G +TL+DLK E
Sbjct: 71 EKIDEFLQTGKLRKLEKIRNDDTSSSINFLTRVTGIGPAAARKFVEEGVKTLEDLKKIEH 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H Q++GLKYF++ + RIPR E+E+ME L+ E+V E I GSYRRG AS GD
Sbjct: 131 KLNHHQQIGLKYFEEFEKRIPRAEMEKMETLILGELEKVDQEYIGTICGSYRRGAASSGD 190
Query: 387 LDVVIMHPDRKSHK----GFLSKYVKKLKEMKFLRE-----DLIF--------STHSEEV 429
+D+++ HP+ S L V L+ + F+ + D F + EE
Sbjct: 191 IDILLTHPNYTSQTEKQPKLLHAVVDHLESIGFVTDTLSKGDTKFMGVCQLQQNDEDEEE 250
Query: 430 Y----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQ 479
Y P+D Y G++ +TG+D+ N+ +R A KG+ L++ + P G G
Sbjct: 251 YLHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRTHALEKGFTLNEYTIRPL--GVTGMA 308
Query: 480 GVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
G L D+EK++FD++ + + EP ER+
Sbjct: 309 G----EPLLVDSEKDIFDYIQYKYREPKERS 335
>gi|51468008|ref|NP_001003879.1| DNA polymerase beta [Danio rerio]
gi|49619119|gb|AAT68144.1| DNA polymerase beta [Danio rerio]
gi|190337954|gb|AAI62397.1| Polymerase (DNA directed), beta [Danio rerio]
Length = 337
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 116/332 (34%), Positives = 177/332 (53%), Gaps = 36/332 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN+ IT+ +L N R + + +Y KA VI K P KI+S + K L G+G +
Sbjct: 11 LNEGITDFLVELANYERNVNRAIHKYNAYRKAASVIAKYPQKIKSGTEAKKLDGVGAKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-ED 326
+ I E +TTGKL KLE D+ +I+ V GIGPA A+K +++G R L+DLK E
Sbjct: 71 EKIDEFLTTGKLRKLEKIRNDDTSSSINFLTRVTGIGPAAARKFFDEGVRNLEDLKKIEH 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H Q++GLKYF++ + RIPR E+++ME L+ K + V PE I GSYRRG S GD
Sbjct: 131 KLNHHQQIGLKYFEEFEKRIPRSEMQKMEALILKELDIVDPEYIGTICGSYRRGAESSGD 190
Query: 387 LDVVIMHPDRKSHK----GFLSKYVKKLKEMKFLREDL---------------------I 421
+D+++ HPD S L V L+ + F+ + L
Sbjct: 191 IDILLTHPDFTSQSEKQPKLLHAVVDHLESIGFITDTLSKGDTKFMGVCQLQKEKEEEEE 250
Query: 422 FSTHSE---EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGK 478
S H + P+D Y G++ +TG+D+ N+ +R A KG+ L++ + P G
Sbjct: 251 ESLHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRTHALEKGFTLNEYTIRPL-----GV 305
Query: 479 QGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
GV A L D+EK++F+++ + + EP +R+
Sbjct: 306 TGV-AGEPLLVDSEKDIFEYIQWKYREPKDRS 336
>gi|432873436|ref|XP_004072215.1| PREDICTED: DNA polymerase beta-like [Oryzias latipes]
Length = 338
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 114/332 (34%), Positives = 178/332 (53%), Gaps = 37/332 (11%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 268
N+ IT+ +L N + + + +Y KA I K P KI + ++ K L G+G + +
Sbjct: 12 NEGITDFLIELANYEKNVNRAIHKYNAYRKAASTISKYPSKIRNGEEAKKLDGVGAKIAE 71
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-EDS 327
I E + TGKL KLE D+ +I+ V GIGPA A+K +E+G +TLDDLK E
Sbjct: 72 KIDEFLQTGKLRKLEKIRNDDTSSSINFLTRVTGIGPAAARKFFEEGVKTLDDLKKVEHK 131
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 387
L H Q++GL+YF++ + RIPR E+EQME L+ E++ PE I GSYRRG AS GD+
Sbjct: 132 LNHHQKIGLRYFEEFEKRIPRAEMEQMEALIIAELEKIDPEYIGTICGSYRRGAASSGDI 191
Query: 388 DVVIMHPDRKSHK----GFLSKYVKKLKEMKFLRE-----DLIF----------STHSEE 428
D+++ HP+ S L V+ L+ + F+ + D F EE
Sbjct: 192 DILLTHPNYTSQTEKQPKLLHAVVEHLESIGFVTDTLSKGDTKFMGVCQLQQSNDDEDEE 251
Query: 429 VY----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGK 478
Y P+D Y G++ +TG+D+ N+ +R A KG+ L++ + P G
Sbjct: 252 EYLHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTLNEYTIRPL-----GV 306
Query: 479 QGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
GV A L D+E+++F+++ + + EP +R+
Sbjct: 307 TGV-AGEPLPVDSERDIFEYIQYKFKEPKDRS 337
>gi|77416689|sp|Q6DRD3.2|DPOLB_DANRE RecName: Full=DNA polymerase beta
Length = 336
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 116/332 (34%), Positives = 177/332 (53%), Gaps = 36/332 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN+ IT+ +L N R + + +Y KA VI K P KI+S + K L G+G +
Sbjct: 10 LNEGITDFLVELANYERNVNRAIHKYNAYRKAASVIAKYPQKIKSGTEAKKLDGVGAKIA 69
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-ED 326
+ I E +TTGKL KLE D+ +I+ V GIGPA A+K +++G R L+DLK E
Sbjct: 70 EKIDEFLTTGKLRKLEKIRNDDTSSSINFLTRVTGIGPAAARKFFDEGVRNLEDLKKIEH 129
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H Q++GLKYF++ + RIPR E+++ME L+ K + V PE I GSYRRG S GD
Sbjct: 130 KLNHHQQIGLKYFEEFEKRIPRSEMQKMEALILKELDIVDPEYIGTICGSYRRGAESSGD 189
Query: 387 LDVVIMHPDRKSHK----GFLSKYVKKLKEMKFLREDL---------------------I 421
+D+++ HPD S L V L+ + F+ + L
Sbjct: 190 IDILLTHPDFTSQSEKQPKLLHAVVDHLESIGFITDTLSKGDTKFMGVCQLQKEKEEEEE 249
Query: 422 FSTHSE---EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGK 478
S H + P+D Y G++ +TG+D+ N+ +R A KG+ L++ + P G
Sbjct: 250 ESLHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRTHALEKGFTLNEYTIRPL-----GV 304
Query: 479 QGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
GV A L D+EK++F+++ + + EP +R+
Sbjct: 305 TGV-AGEPLLVDSEKDIFEYIQWKYREPKDRS 335
>gi|154315176|ref|XP_001556911.1| hypothetical protein BC1G_04627 [Botryotinia fuckeliana B05.10]
Length = 353
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 112/347 (32%), Positives = 173/347 (49%), Gaps = 46/347 (13%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSM 266
P+ N + +I ++ + Y +G+ R+ SY +A ++ P I + + +P IG+ +
Sbjct: 10 PNPNNHTIQILSRMKDYYERIGDQWRTRSYMQACGQLKNQPALIRTFSEAIVIPKIGQRI 69
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED 326
I+EIV TG+L +LEH E + + + LF ++G+ A K +GHR+ DLKN
Sbjct: 70 AKKIEEIVLTGRLRRLEHAEAEPDDKILKLFMGIYGVNYKLASKWISQGHRSFADLKNNI 129
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
LT SQ++G++ +DD++ RIPRHE+EQ+ + + + + PE+ I GGSYRRG + GD
Sbjct: 130 KLTPSQQIGIERYDDLQLRIPRHEIEQLGKFITDTTKTIDPEIEITIGGSYRRGAKTSGD 189
Query: 387 LDVVIMHPDRKSHKG-------FLSKYVKKLKEMKFLREDLIFSTHSEE----------- 428
+D++I KSH FLS VK L FL L ++E
Sbjct: 190 IDIII----SKSHTTQTTQLTPFLSSLVKSLTASHFLTAALAVPHNNEGSKWHGCCVLPS 245
Query: 429 -----------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPA 471
+ P L+ +TG+D+ NR +RLLA KG RL+ GL+
Sbjct: 246 SSSASHPPNPWRRIDFLLVPASEIGAALLYFTGDDIFNRSMRLLAGKKGMRLNQRGLYRD 305
Query: 472 TYGSGGKQG-------VRARTSLKFDTEKEVFDFLGFPWLEPHERNL 511
G K G V T ++ E+ +F+ LG PW EP ER L
Sbjct: 306 AMRGGMKSGKWETRNKVTDGTLVEGRDERAIFEALGVPWREPWERVL 352
>gi|432099929|gb|ELK28823.1| DNA polymerase beta [Myotis davidii]
Length = 376
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 125/387 (32%), Positives = 200/387 (51%), Gaps = 59/387 (15%)
Query: 169 APNSPMSSESLTNTLST--ASASPDF----SSHHITDPSLLY-----------NP-PDLN 210
+P SP++ S+T T S+ +PDF + T P+ +P P L+
Sbjct: 3 SPTSPLTGFSVTFTTSSFYPCLTPDFRGGTAFRPCTSPAFRVHVGSAQRSAGGDPLPSLS 62
Query: 211 KNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHI 270
+ L+ Y D + KA VI K P KI+S + K LPG+G + + I
Sbjct: 63 RQFLPF---LVASYTGYVRDSK-----KAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKI 114
Query: 271 QEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLT 329
E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED L
Sbjct: 115 DEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKFVDEGIKTLEDLRKNEDKLN 174
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD+DV
Sbjct: 175 HHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDV 234
Query: 390 VIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL------------IFSTHSEEVY--- 430
++ HP S L + V++L+++ F+ + L + S + + Y
Sbjct: 235 LLTHPSFTSESNKQPKLLHRVVEQLQKVCFITDTLSKGETKFMGVCQLPSKNDGKEYPHR 294
Query: 431 -------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRA 483
P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P G GV A
Sbjct: 295 RIDIRLIPKDQYYCGVLYFTGSDIFNKNMRTHALEKGFTINEYTIRPL-----GVTGV-A 348
Query: 484 RTSLKFDTEKEVFDFLGFPWLEPHERN 510
L D+EK++FD++ + + EP +R+
Sbjct: 349 GEPLPVDSEKDIFDYIQWKYREPKDRS 375
>gi|395507540|ref|XP_003758081.1| PREDICTED: DNA polymerase beta [Sarcophilus harrisii]
Length = 348
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 111/323 (34%), Positives = 179/323 (55%), Gaps = 34/323 (10%)
Query: 216 IFGKLINIYRALGEDRRSFSYY-KAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIV 274
+F +L N R + +S Y KA VI K P +I+S + K L G+G + + I E +
Sbjct: 31 LFSELANYERNVNRAIHKYSAYRKAASVIAKYPSQIKSGAEAKKLDGVGAKIAEKIDEFL 90
Query: 275 TTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQR 333
TGKL KLE +D+K +I+ V GIGP+ A+KL ++G +TL+DL KNE L H QR
Sbjct: 91 ATGKLRKLEKIRQDDKSSSINFLTRVSGIGPSAARKLVDEGIKTLEDLRKNESKLNHHQR 150
Query: 334 LGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMH 393
+GL+YF+D + RIPR E+ QM+ ++ ++V + I GS+RRG S GD+D+++ H
Sbjct: 151 IGLRYFEDFEKRIPREEMLQMQDIVLNEIKKVDSKYIATVCGSFRRGAESSGDMDILLTH 210
Query: 394 PDRKSHKG----FLSKYVKKLKEMKFLREDLI-----------FSTHSEEV--------- 429
P S L + V++L+++ F+ + L S+ EEV
Sbjct: 211 PSFTSESAKQPKLLHQVVEQLQKVHFITDTLSKGDTKFMGVCQLSSEDEEVAYPYRRIDI 270
Query: 430 --YPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSL 487
P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P G GV A L
Sbjct: 271 RLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTGV-AGEPL 324
Query: 488 KFDTEKEVFDFLGFPWLEPHERN 510
D+EK++FD++ + + EP +R+
Sbjct: 325 PVDSEKDIFDYIQWKYREPKDRS 347
>gi|118380982|ref|XP_001023653.1| Helix-hairpin-helix motif family protein [Tetrahymena thermophila]
gi|89305420|gb|EAS03408.1| Helix-hairpin-helix motif family protein [Tetrahymena thermophila
SB210]
Length = 832
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 110/334 (32%), Positives = 184/334 (55%), Gaps = 34/334 (10%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
+ NK ITE KL+ IY+ + RS +Y KA+ +I+ L F+I+S V+ + G+G+ +
Sbjct: 503 NFNKLITEELEKLLKIYQQEKDIGRSIAYRKAVGIIKSLDFQIKSVKDVQKINGLGEKTK 562
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NED 326
+ I+EI+ TG+ + + + E+ + I L +VWGIGP+TA +LYE+ +T+ +L+ N+
Sbjct: 563 EKIKEILETGQCQRAQILTQSERNQAIELLSQVWGIGPSTASQLYERNIKTIAELRQNQH 622
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEV-----IILCGGSYRRGK 381
L +Q++GL+YF+D+ R+PR E + + K +E+ PE II C GSYRR
Sbjct: 623 LLNKNQKIGLQYFEDLVERMPREEATLIVNEVIKGFKELYPEEHDRYDIIAC-GSYRR-- 679
Query: 382 ASCGDLDVVIMHPDRKSH--KGFLSKYVKKLKEMKFLREDLIFSTHSE------------ 427
+CGD+D++I D + + K + + KL++ L E L F ++
Sbjct: 680 ETCGDVDILICRKDGEENKPKKLMINLICKLEQDGLLIEHLQFPRPNQYGSETYMGIGKL 739
Query: 428 ----------EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGG 477
+ YP+D+Y + L+ +TG+D NR +RL A KGY L D GL+ A
Sbjct: 740 KDGKHRRIDLKYYPKDLYGYALLYFTGSDYFNRSMRLFARKKGYSLSDHGLY-AVNRIDN 798
Query: 478 KQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 511
K + + ++ TE+EVF L + P+ R++
Sbjct: 799 KTKITSSLAIPCYTEEEVFAALNLEYKPPYMRSV 832
>gi|242767987|ref|XP_002341478.1| DNA polymerase POL4, putative [Talaromyces stipitatus ATCC 10500]
gi|218724674|gb|EED24091.1| DNA polymerase POL4, putative [Talaromyces stipitatus ATCC 10500]
Length = 686
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 159/592 (26%), Positives = 261/592 (44%), Gaps = 93/592 (15%)
Query: 3 PKTTRKPTPAL----DSNGIFAGMRVFLVEKG--VQNRRLQIWRQKLVQMGATVEEKLSK 56
PK ++ P+ +S IF ++ F V RRL+I R + GA + S
Sbjct: 101 PKCKKRRAPSAHVVPESEQIFKNLKFFFVPNNDISPARRLRIQRSQ--DYGAAWAQTWST 158
Query: 57 KVTHVL---AMDLEALLQQVSKQHLARFKG-SVIRYQWLEDSL----------------- 95
+THV+ +D + +L+ ++ + L F +++ ++ D L
Sbjct: 159 DITHVIVDKGLDYKEVLKVLTPEQL--FADIAIVNQDYVSDCLVFKSILLVTQARFRVDG 216
Query: 96 ---------------------RLGEKVSEDLYRIKLDP---EGENIADRVLSQIQGNGNT 131
L EK + R + P E I IQ +
Sbjct: 217 TPKTSGTDKPAHAMASIKPTGSLQEKQPQRHGRRSVTPSRSEDTRIDQMTPVAIQQEADA 276
Query: 132 SSDGESSHRK---------KIKSSTE-DVEHFQAESKGDVETNALSEAPNSPMSSESLTN 181
+S +S RK K+K++ + ++ E+ DV SEA +S ++ + +
Sbjct: 277 ASSSQSDQRKPDALDKLILKVKAAGDLPLDEADDEAALDVTIECGSEAESSQKATANPDS 336
Query: 182 TLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIP 241
+ T +F+ D + L N P N +I K+ Y ++ R+ +Y KAI
Sbjct: 337 KVPTWQK--NFACMEKHDGNGLNNNP--NARTIDILQKMAVYYERTADNWRTTAYRKAIA 392
Query: 242 VIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVW 301
+ K KI + + +PGIG+ + D I+EIV+T L +L++ + R + LF V+
Sbjct: 393 ALRKQKSKICTKAEALAIPGIGQRLADKIEEIVSTDHLRRLDNINATPEDRALQLFLGVY 452
Query: 302 GIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKA 361
G G A A K KG+R+L+DL+N+ LT +Q++G++ ++D K RIPR EV +++ A
Sbjct: 453 GAGFAQASKWVAKGYRSLEDLENKAELTANQKIGVERYNDFKQRIPRAEVALHGNIIRAA 512
Query: 362 GEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD---RKSHKGFLSKYVKKLKEMKFLRE 418
+ P++ + GSYRRG A CGD+D++I + + V KL E FL+
Sbjct: 513 VHALDPDMEAMVAGSYRRGAADCGDIDILITKSNGTIEYLRTLMIDNVVPKLMEKGFLKA 572
Query: 419 DLIFST-------HSEEVYP-RDIY-------------AFGLIAWTGNDVLNRRLRLLAE 457
L ++ H P D++ LI +TGND+ NR LRLLA
Sbjct: 573 SLATTSRGDGPKWHGASALPGTDLWRRIDLLFVPGPEIGAALIYFTGNDIFNRSLRLLAR 632
Query: 458 SKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
KG RL+ GL+ + + T L+ EK +F+ LG PW P R
Sbjct: 633 KKGMRLNQHGLYKDVLRGPNQVKLTDGTLLEGQDEKRIFEILGVPWRPPEHR 684
>gi|429862634|gb|ELA37273.1| DNA polymerase [Colletotrichum gloeosporioides Nara gc5]
Length = 809
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 108/334 (32%), Positives = 171/334 (51%), Gaps = 34/334 (10%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N E+ ++ + Y + R +Y KAI +++ P K+ +A++ LPG+G+ + D
Sbjct: 474 NNRTIEVLQQMCDYYTRTNDTWRPIAYRKAITQLKRQPNKVSTAEEAIRLPGVGQRLADK 533
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EIVTT +L +LEH E + + F +++G+G A +G RTL DLK + LT
Sbjct: 534 IEEIVTTNRLQRLEHAESEPMDEILQTFLKIYGVGSVQASHWISQGFRTLGDLKQKAKLT 593
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+Q +G+ ++DD+ TRIPR EV+ + +++ ++ P V I+ GGSYRRG + GD+D
Sbjct: 594 ANQHVGIDHYDDLNTRIPRSEVKLLGAVVRSEAAKLDPAVQIIIGGSYRRGADNSGDVDF 653
Query: 390 VIMHPDRKSHK---GFLSKYVKKLKEMKFLREDLIFST--------HSEEVYP------- 431
+I KS FL++ V+ L+ +FL L S H V P
Sbjct: 654 LITKKRTKSTSDLISFLNELVRVLESQRFLVARLASSRDDGDGSKWHGCCVLPKINGFNE 713
Query: 432 ---RDIY-------------AFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS 475
R I+ LI +TGND+ NR +RLLA KG RL+ GL+
Sbjct: 714 KDYRKIWRRVDFLLVPETELGAALIYFTGNDIFNRSIRLLASKKGMRLNQRGLYKDVMRG 773
Query: 476 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ + ++ E+++F+ LG W EPHER
Sbjct: 774 PSRVKMTEGELVEGQDERKIFEILGVKWREPHER 807
>gi|157423583|gb|AAI53576.1| Polymerase (DNA directed), beta [Danio rerio]
Length = 337
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 115/332 (34%), Positives = 177/332 (53%), Gaps = 36/332 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN+ IT+ +L N R + + +Y KA VI K P KI+S + K L G+G +
Sbjct: 11 LNEGITDFLVELANYERNVNRAIHKYNAYRKAASVIAKYPQKIKSGTEAKKLDGVGAKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-ED 326
+ I E +TTGKL KLE D+ +I+ V GIGPA A+K +++G R L+DLK E
Sbjct: 71 EKIDEFLTTGKLRKLEKIRNDDTSSSINFLTRVTGIGPAAARKFFDEGVRNLEDLKKIEH 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H Q++GLKYF++ + RIPR E+++ME L+ K + V PE I GSYRRG S GD
Sbjct: 131 KLNHHQQIGLKYFEEFEKRIPRSEMQKMEALILKELDIVDPEYIGTICGSYRRGAESSGD 190
Query: 387 LDVVIMHPD----RKSHKGFLSKYVKKLKEMKFLREDL---------------------I 421
+D+++ HPD + L V L+ + F+ + L
Sbjct: 191 IDILLTHPDFTFQSEKQPKLLHAVVDHLESIGFITDTLSKGDTKFMGVCQLQKEKEEEEE 250
Query: 422 FSTHSE---EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGK 478
S H + P+D Y G++ +TG+D+ N+ +R A KG+ L++ + P G
Sbjct: 251 ESLHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRTHALEKGFTLNEYTIRPL-----GV 305
Query: 479 QGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
GV A L D+EK++F+++ + + EP +R+
Sbjct: 306 TGV-AGEPLLVDSEKDIFEYIQWKYREPKDRS 336
>gi|374258478|gb|AEZ01785.1| DNA polymerase beta, partial [Pogona vitticeps]
Length = 335
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 114/334 (34%), Positives = 180/334 (53%), Gaps = 37/334 (11%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIG 263
NP N+ IT+ +L N R + + +Y KA VI K P KI+S + K L G+G
Sbjct: 10 NP---NEGITDFLSELANYERNVNRAIHKYNAYRKAASVISKYPTKIKSGAEAKKLDGVG 66
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 323
+ + I E ++TGKL KLE +D+ +I+ V GIGPA A+K E+G +TL+ LK
Sbjct: 67 AKIAEKIDEFLSTGKLRKLEKIRQDDTSSSINFLTRVTGIGPAAARKFVEEGIKTLEGLK 126
Query: 324 -NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA 382
NE L H QR+GLKYF+D + RIPR E+ +M+ ++ + +EV P I GS+RRG
Sbjct: 127 KNEHKLNHHQRIGLKYFEDFEKRIPREEMLEMQEIVLREVKEVDPRYIATVCGSFRRGAE 186
Query: 383 SCGDLDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL---------IFSTHSEE- 428
S GD+D+++ HPD S L + V++L+++ F+ + L + S E
Sbjct: 187 SSGDMDILLTHPDFTSESSKQPKLLHQIVEQLEKIHFVTDTLSKGDTKFMGVCRLPSXEG 246
Query: 429 ------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSG 476
+ P+D Y G++ +TG+D+ N+ +R A G+ + + P
Sbjct: 247 GTDXPYRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEMGFTXHEYTIRPL----- 301
Query: 477 GKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
G GV A L D+EK++FD++ + + EP +R+
Sbjct: 302 GVTGV-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334
>gi|358379789|gb|EHK17468.1| hypothetical protein TRIVIDRAFT_57340 [Trichoderma virens Gv29-8]
Length = 624
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 107/330 (32%), Positives = 171/330 (51%), Gaps = 25/330 (7%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 264
N + N EI K+ Y + + R+ +Y KAI ++++ KI + ++ LP IG+
Sbjct: 293 NQDNPNARTIEILQKMNGYYERINDHWRTIAYRKAISILKQQSVKITTEEEAYRLPSIGR 352
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN 324
+ I+EIVTT KL +LE E+D + F +++G+G A++ +G RTL+D+K
Sbjct: 353 RLAQKIEEIVTTDKLQRLECAEEDPTDHALQTFLKIYGVGNKIAEQWIAQGWRTLEDVKQ 412
Query: 325 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 384
LT SQR+G++++DD+ TRIPR EV + +++KA E+ V ++ GGSYRRG S
Sbjct: 413 HAKLTPSQRVGMEHYDDLNTRIPRMEVTALGDIVKKAAAEIDAAVQLIIGGSYRRGAESS 472
Query: 385 GDLDVVIMHPDRKS---HKGFLSKYVKKLKEMKFLREDLIFSTHSEE------------- 428
D+D+++ P +S + FLS+ + +L+ KFL L S +
Sbjct: 473 HDIDLIVTKPGTESVAELRAFLSRLIDQLERDKFLVARLASSHAGGDGSKWHGCCNGEYR 532
Query: 429 ---------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQ 479
+ P LI +TGND+ NR +RLLA K RL+ GL+ +
Sbjct: 533 PIWRRIDFLLVPEAELGAALIYFTGNDIFNRSMRLLASKKRMRLNQRGLYRDVLRGPNRA 592
Query: 480 GVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ ++ EK +F+ LG W EP ER
Sbjct: 593 KITEGELVESRDEKRIFEILGVKWREPWER 622
>gi|392587221|gb|EIW76555.1| hypothetical protein CONPUDRAFT_63239 [Coniophora puteana
RWD-64-598 SS2]
Length = 683
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 109/335 (32%), Positives = 176/335 (52%), Gaps = 36/335 (10%)
Query: 210 NKNITEIFGKLINIYRALG--EDR-RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSM 266
N+++ + +L+ +++A +DR R FSY K I ++ P +I+S Q + + G+G+
Sbjct: 347 NQDVVDALEQLMELHKAKSSEDDRWRVFSYGKCIRALKNHPKRIKSLSQARAIRGVGEKT 406
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED 326
I EI+ TG L +++ +E E V +F ++G+G TA Y G RTLDD+K
Sbjct: 407 AMKIMEIIETGGLKRIQ-YENTEDVEATKIFQGIYGVGRNTAFAWYANGCRTLDDIKMCK 465
Query: 327 S---LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKAS 383
++ Q +G+K++DDI TRIPR EV+++ ++ ++ P++ I GS+RRGKA
Sbjct: 466 GGIKVSAVQEIGIKFYDDINTRIPRAEVQEIFDRIKSVALDMDPKLFIEVMGSFRRGKAD 525
Query: 384 CGDLDVVIMH--PDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE------------- 428
CGD+DV+I D K+H GFLSK + +L E+ L EDL +
Sbjct: 526 CGDIDVLITRDTADGKTHAGFLSKLLDELHELDILTEDLSVPDDYSDLELCYRGLCMLPG 585
Query: 429 ------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSG 476
P + L+ +TG+D+ NR +R+ A GY L+ GL+
Sbjct: 586 LPGARRRRIDILCVPWECRGGALLYYTGDDIFNRAMRMKANVLGYSLNQRGLYAGVVRDP 645
Query: 477 GKQGVR--ARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ V+ + + +TE+E+F LG PW EPHER
Sbjct: 646 KDRRVKLHGGSIIASETEEEIFKVLGVPWQEPHER 680
>gi|314932539|gb|ADT64454.1| DNA polymerase beta [Ailurus fulgens]
Length = 313
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 111/319 (34%), Positives = 177/319 (55%), Gaps = 34/319 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 1 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 60
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 61 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 120
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 121 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 180
Query: 387 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL------------IFSTHSEE-- 428
+DV++ HP S L + V++L+++ F+ + L + S + E+
Sbjct: 181 MDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKEC 240
Query: 429 --------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
+ P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P G G
Sbjct: 241 PHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTG 295
Query: 481 VRARTSLKFDTEKEVFDFL 499
V A L D+EK++FD++
Sbjct: 296 V-AGEPLPVDSEKDIFDYI 313
>gi|406859068|gb|EKD12139.1| fungal specific transcription factor domain-containing protein
[Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 2097
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 105/323 (32%), Positives = 166/323 (51%), Gaps = 23/323 (7%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N+ EI G++ Y + + R+ +Y KA+ ++K KI +Q L IG +
Sbjct: 1772 NRQTIEILGEMGAYYERIRDQWRTLAYRKAVGTLKKQSVKITRYEQAIELQFIGHRLALK 1831
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EI TG L +L++ D +T+ LF +++G+GP A K + GH+TLDDL+ +L
Sbjct: 1832 IEEIAITGHLRRLDNARLDPNDKTLQLFLKIYGVGPGQADKWIQAGHKTLDDLRALPNLH 1891
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+Q++GL ++DD +TRIPR +V + +++KA E+ P+V + GGSYRRG + GD+D
Sbjct: 1892 KNQKVGLDHYDDFETRIPRDQVTALGEIVKKAVHEIDPQVEAIIGGSYRRGALTSGDIDF 1951
Query: 390 VIMHPDRKSHKG---FLSKYVKKLKEMKFLREDLIFSTHSEE------------------ 428
+I +S FL+K V +L FL L S
Sbjct: 1952 IITKRGTESSLDLLPFLNKLVARLTHDAFLVCPLAVPHQSGSKWHGACVLPGNPIWRRID 2011
Query: 429 --VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTS 486
+ P + L+ +TG+D+ NR +RLLA KG RL+ GL+ G+ +
Sbjct: 2012 FLIVPESEFGAALLYFTGDDIFNRSMRLLASKKGMRLNQRGLYKDVMRGPGRVKLNEGEF 2071
Query: 487 LKFDTEKEVFDFLGFPWLEPHER 509
++ E+ +FD LG PW P ER
Sbjct: 2072 VEGADERRIFDVLGVPWRPPQER 2094
>gi|403339784|gb|EJY69154.1| Helix-hairpin-helix motif family protein [Oxytricha trifallax]
Length = 432
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 113/331 (34%), Positives = 175/331 (52%), Gaps = 36/331 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 268
LN I E +L Y+ L + R + Y +A+ + + I S DQ+K +P IG+ +
Sbjct: 110 LNNEIAEQLDRLFKYYQTLKDKGRMWGYKRAVTQVRSIKEPIYSLDQLKDVPNIGEGILK 169
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS- 327
++E V G + + E + DEK++T+ LF +VWGIGP+ AQ+L++K R+++DL+N S
Sbjct: 170 KLREYVAEGSIKRFEFIDTDEKIKTLQLFEQVWGIGPSKAQELWDKKMRSIEDLRNHQSL 229
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP--EVI--ILCGGSYRRGKAS 383
LT Q++GLKYF+D +IPR EV ++ +++ +V+P E I I GSYRRG+
Sbjct: 230 LTSMQKIGLKYFEDFNEKIPREEVTKLLEKVREISYKVIPMGEKILKIEACGSYRRGRQL 289
Query: 384 CGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLRE---DLIFSTHSEE------------ 428
CGD+DV++ D + G K V L++ FL+E DL E
Sbjct: 290 CGDIDVLVTRTDGEPIHGLNEKIVVSLEKEGFLKERLGDLRKGATGHEGYQGICQLSPKH 349
Query: 429 --------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
VYP D Y + L+ +TG+ N +R A +GY L D G+ K G
Sbjct: 350 KIRRIDLKVYPSDQYGYALLYFTGSGNFNVDMRTQALKQGYTLSDHGMH--------KIG 401
Query: 481 VRARTSLKFDTEKEVFDFLGFPWLEPHERNL 511
+ S+ TE+EVF LG + P+ER++
Sbjct: 402 QKNGKSIPALTEEEVFKALGLEYKAPNERDI 432
>gi|395329013|gb|EJF61402.1| hypothetical protein DICSQDRAFT_60488 [Dichomitus squalens LYAD-421
SS1]
Length = 787
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 103/312 (33%), Positives = 168/312 (53%), Gaps = 31/312 (9%)
Query: 228 GEDRR--SFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF 285
GED R + KAI + + P +I + ++ L G+G+ I EI+ TG L +++ +
Sbjct: 474 GEDDRWRVYGLNKAIAALRRCPTRIRTLEEAMKLNGVGEKTARKIIEIIQTGDLMRIQ-Y 532
Query: 286 EKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL---KNEDSLTHSQRLGLKYFDDI 342
E E ++ + F ++G+G TA+ L+ G RTL+D+ K L+H+Q +GL+Y+ DI
Sbjct: 533 ETTEDIKAVKEFTGIYGVGANTARTLFNNGCRTLEDIAARKGGVKLSHAQEIGLRYYRDI 592
Query: 343 KTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP--DRKSHK 400
TRIPR EV+++ ++ ++ P++ I GS+RRGK++CGD+D++I P D K+H+
Sbjct: 593 NTRIPRAEVQEIYDKIKGEALKLDPKLFIQVMGSFRRGKSTCGDIDILISRPVDDGKTHQ 652
Query: 401 GFLSKYVKKLKEMKFLREDLIFSTHSEE---VY--------------------PRDIYAF 437
G L + + +L + EDL + E+ VY P
Sbjct: 653 GILRRLLAELHRQDIITEDLCLPDNFEDLELVYRGLCRKGPGSLRRRIDFLTVPWVSRGA 712
Query: 438 GLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFD 497
L+ +TG+D+ NR LRL A GY L+ GL+ + +Q V + ++E+E+ D
Sbjct: 713 ALLYYTGDDIFNRSLRLKANKMGYSLNQRGLYADVIRNKDRQKVTEGVLVASESEREILD 772
Query: 498 FLGFPWLEPHER 509
LG PW EPHER
Sbjct: 773 ILGVPWQEPHER 784
>gi|449270885|gb|EMC81533.1| DNA polymerase beta, partial [Columba livia]
Length = 315
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 108/316 (34%), Positives = 175/316 (55%), Gaps = 36/316 (11%)
Query: 222 NIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSK 281
N+ RA+ + +Y KA VI + P KI S + K L G+G + + I E ++TGKL K
Sbjct: 8 NVNRAI---HKYNAYRKAASVISRYPSKIRSGAEAKKLDGVGAKIAEKIDEFLSTGKLRK 64
Query: 282 LEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NEDSLTHSQRLGLKYFD 340
LE +D+ +I+ V GIGPA A+K E+G +TL+DL+ NE LTH QR+GLKYF+
Sbjct: 65 LEKIRQDDTSASINFLTRVTGIGPAAARKFVEEGIKTLEDLRRNEHKLTHHQRIGLKYFE 124
Query: 341 DIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP----DR 396
D + RIPR E+ QM+ ++ K +++ P I GS+RRG S GD+DV+I HP D
Sbjct: 125 DFEKRIPREEMLQMQEIVLKEVQKLDPNYIATVCGSFRRGAESSGDMDVLITHPSFTSDS 184
Query: 397 KSHKGFLSKYVKKLKEMKFL-------------------REDLIFSTHSE---EVYPRDI 434
L + V++L+++ F+ +ED H + P+D
Sbjct: 185 SKQSRLLHQVVEQLEKVHFVTDMLSKGDTKFMGVCQLPDKEDGTAYPHRRIDIRLVPKDQ 244
Query: 435 YAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKE 494
Y G++ +TG+D+ N+ +R A G+ +++ + P G GV A +L ++E++
Sbjct: 245 YYCGVLYFTGSDIFNKNMRAHALEMGFTINEYTIRPL-----GVTGV-AGEALPVESEED 298
Query: 495 VFDFLGFPWLEPHERN 510
+FD++ + + EP +R+
Sbjct: 299 IFDYIQWKYREPKDRS 314
>gi|212542803|ref|XP_002151556.1| DNA polymerase POL4, putative [Talaromyces marneffei ATCC 18224]
gi|210066463|gb|EEA20556.1| DNA polymerase POL4, putative [Talaromyces marneffei ATCC 18224]
Length = 628
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 153/581 (26%), Positives = 256/581 (44%), Gaps = 89/581 (15%)
Query: 14 DSNGIFAGMRVFLVEKG--VQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEA 68
++N IF G+ F V RRL+I R + + GA+ + S VTHV+ +D
Sbjct: 54 ETNQIFKGLTFFFVPNNDISPARRLRIQRSQ--EYGASWAQTWSSDVTHVIVDKGLDYRE 111
Query: 69 LLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGN 128
+L+ ++ + L+ +++ ++ D L + R ++D + Q N
Sbjct: 112 MLKVLTPEQLS-ANIAIVNQDYVSDCLVFKSVLLVTQLRFRVDGTPTTSGTDAAAPAQAN 170
Query: 129 G------NTSSDGESSHRKKIKSST----EDVE---------HFQAESKGD--------- 160
N+S + + S RK +S T ED H +S
Sbjct: 171 SIPTTNPNSSLNVKESRRKNRRSMTPCRSEDTPIGNPAPVTVHQDTDSASPNQAEQWTPD 230
Query: 161 ------VETNALSEAP-NSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNI 213
++ A + P + P +L T S + + S IT P+ P+ KN
Sbjct: 231 LLDELMLKVKAAGQLPLDEPDDDAALDVTFEPGSGA-ETSDEAITTPN--DKVPNWQKNF 287
Query: 214 T-------------------EIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESAD 254
EI K+ + Y + R+ +Y KAI + K KI +
Sbjct: 288 ACMQKHDGNSSNNNPNAKTIEILQKMADYYDRTADTWRTMAYRKAIAALRKQKAKICTKA 347
Query: 255 QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK 314
+ +PGIG+ + D I+EIV+T +L +LE+ + + + LF V+G G A A K K
Sbjct: 348 EALAIPGIGQRLADKIEEIVSTDRLHRLENINWTPEDKALQLFLGVYGAGFAQASKWVAK 407
Query: 315 GHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCG 374
G+R+L+DLKN+ LT +Q++G++ ++D + RIPR EV + +++A + P++ ++
Sbjct: 408 GYRSLEDLKNKAELTTNQKIGVERYNDFQQRIPRAEVAKHGESVREAVHAIDPDMEVMVT 467
Query: 375 GSYRRGKASCGDLDVVIMHPD---RKSHKGFLSKYVKKLKEMKFLREDLIFST------- 424
GSYRRG A CGD+D++I + + V +L + FL+ L ++
Sbjct: 468 GSYRRGAADCGDIDILITKTNGTIEYIRTLMMDNVVPELTKKGFLKASLATTSRGDGSKW 527
Query: 425 HSEEVYP-RDIY-------------AFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 470
H P D++ L+ +TGND+ NR +RLLA KG RL+ GL+
Sbjct: 528 HGASALPGTDLWRRIDLLFVPGNEIGASLLYFTGNDIFNRSVRLLARKKGMRLNQHGLYK 587
Query: 471 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 511
+ + T L+ EK + + LG PW P RN
Sbjct: 588 DVLRGPNQAKLTDGTLLEGRDEKRILEILGVPWRPPQHRNC 628
>gi|198413629|ref|XP_002128462.1| PREDICTED: similar to DNA polymerase beta [Ciona intestinalis]
Length = 326
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 109/309 (35%), Positives = 170/309 (55%), Gaps = 31/309 (10%)
Query: 222 NIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSK 281
N+ RA +S +Y KA I + +I+S D+ + L G+G + D I E + TGKL K
Sbjct: 28 NVNRAF---HKSNAYRKAASSISRFGKEIKSGDEARKLEGVGAKISDKINEFLKTGKLEK 84
Query: 282 LEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSLTHSQRLGLKYFD 340
LE KDE + ISLF + G+GP A+KL E G ++L+DLKN + L H Q +G+KYFD
Sbjct: 85 LEKVRKDETSQIISLFTRISGVGPVAARKLMELGFKSLEDLKNNSEKLNHHQNIGVKYFD 144
Query: 341 DIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP-----D 395
D + RIPR E+E++E ++ V P+ + GSYRRG S GD+DV++ HP
Sbjct: 145 DFEKRIPREEMEKLEGMVVGKVTGVDPKFVATVCGSYRRGATSSGDIDVLVTHPCFTSET 204
Query: 396 RKSHKGFLSKYVKKL----------KEMKFL----REDLIFSTHSEEVYPRDIYAFGLIA 441
+K+ K L++ VK L + KF+ E + + P D Y L+
Sbjct: 205 KKTLK--LNEIVKSLGSFITDTLSMGDTKFMGVCSLEGTVHRRIDIRLIPHDQYFTSLLY 262
Query: 442 WTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGF 501
+TG+D+ N+R+R A +G+ +++ + P GS G G L +E+++F+ +G
Sbjct: 263 FTGSDIFNKRMRTFALEQGFTINEYSVRPQ--GSTGVPG----NPLPVTSERDIFEIIGM 316
Query: 502 PWLEPHERN 510
+LEP +R+
Sbjct: 317 KYLEPSQRS 325
>gi|367019770|ref|XP_003659170.1| hypothetical protein MYCTH_76690 [Myceliophthora thermophila ATCC
42464]
gi|347006437|gb|AEO53925.1| hypothetical protein MYCTH_76690 [Myceliophthora thermophila ATCC
42464]
Length = 781
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 105/324 (32%), Positives = 163/324 (50%), Gaps = 24/324 (7%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N + EI K+ + Y + + R+ +Y KAI + + P +I + D+ LP IG+ +
Sbjct: 456 NAHTIEILQKMCDYYARVNDTWRTLAYRKAIATLRRQPTRITTEDEAFRLPNIGRRLAAK 515
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EI T +L +LE+ + R + LF V+ +G + A K +G+RTLDDL+ + LT
Sbjct: 516 IEEIACTNRLRRLEYANDEPLDRILELFLNVYDVGLSRANKWIAQGYRTLDDLRLKADLT 575
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+QR+G+ ++DD+ +RIPR EV + +++ + P V +L GGSYRRG S GD+D+
Sbjct: 576 PNQRIGVDHYDDLNSRIPRAEVAALFAYVRREAALLDPRVELLVGGSYRRGAESSGDVDI 635
Query: 390 VIMHPDRKS----------------HKGFLSKYVKKLKEMKFLREDLIFSTHSEEVY--- 430
++ S KGFL + L + ++ H V+
Sbjct: 636 IVTRKGTSSSAELVPFLEELIAVLTRKGFLVATLAALHAQRPGKDGPGSKWHGCCVWRRI 695
Query: 431 -----PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRART 485
P Y LI +TGND+ NR +RLLA KG RL+ GL+ + V
Sbjct: 696 DFLLVPESEYGAALIYFTGNDIFNRSMRLLASKKGMRLNQRGLYKEVMRGKNRGKVTEGE 755
Query: 486 SLKFDTEKEVFDFLGFPWLEPHER 509
L+ EK +F+ LG W EP ER
Sbjct: 756 LLEGRDEKRIFELLGVKWREPWER 779
>gi|307178501|gb|EFN67190.1| DNA polymerase beta [Camponotus floridanus]
Length = 337
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 113/336 (33%), Positives = 181/336 (53%), Gaps = 36/336 (10%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIG 263
N + N+++ + +L + R + ++ + +Y KA + LP +++S ++ K LPGIG
Sbjct: 9 NANNPNQDLCDFLLELADFERNVSKNIYKYNAYRKAAGTLSALPERVKSGEEAKKLPGIG 68
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 323
+ I E + TGKL KLE KDE ISL V GIGPA A++L + G +TL+DLK
Sbjct: 69 IKIAKKIDEFLQTGKLQKLEDIRKDENNIAISLLARVSGIGPAKAKELVDAGIKTLEDLK 128
Query: 324 -NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA 382
+++ LTH Q+LGLKYFDD + +IPR E+ Q+E +L+ A +E+ + ++ GSYRRGK
Sbjct: 129 KHQNMLTHHQKLGLKYFDDFEKKIPRAEIIQIEGILRDAMKEISHDYLVTICGSYRRGKE 188
Query: 383 SCGDLDVVIMHP-------DRKSHKGFLSKYVKKLKEMKFLREDLIFST----------- 424
GD+DV+I HP D K L V+ L+E K + + + +
Sbjct: 189 ESGDIDVLITHPDYTSKTKDAKKKNISLKTIVECLEEKKLITDTISLGSTKFMGVCQLRK 248
Query: 425 HSEEVYPR--------DIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATY-GS 475
+ + R D Y ++ +TG+D+ N+ +R A K Y L++ L P T G
Sbjct: 249 SKHKPFRRLDIRLTFYDQYYCAILYFTGSDLFNKNMRAHALEKKYTLNEYALKPLTIEGC 308
Query: 476 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 511
G+ K E+++F+ LG P+ +P +RN+
Sbjct: 309 PGEPE-------KITCEEDIFEILGLPYKDPKDRNV 337
>gi|389738936|gb|EIM80131.1| hypothetical protein STEHIDRAFT_68704 [Stereum hirsutum FP-91666
SS1]
Length = 776
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 117/344 (34%), Positives = 173/344 (50%), Gaps = 45/344 (13%)
Query: 210 NKNITEIFGKLINIYRA---LGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIG--- 263
N++I + KL ++RA G+ R+F+Y K +P + P +IES + +PGIG
Sbjct: 431 NEDIVILLEKLAEMHRAKPMPGDFWRTFTYQKILPKLRAYPTRIESYAEAVSIPGIGDAT 490
Query: 264 --KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDD 321
K+ IQEI+ TG L +L +E V I+LF ++G+G TA K Y G TL+D
Sbjct: 491 AKKAGGSSIQEILETGDLRRL-LYENTRDVEVINLFYGIYGVGRQTAYKWYRYGCETLED 549
Query: 322 L---KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYR 378
L KN L Q LGLKY+ DI TRIPR E ++ +++ + P++ I GSYR
Sbjct: 550 LFSGKNGVQLNEVQELGLKYYQDINTRIPREEAAEIFEDIKRIALRIDPKLFIDIMGSYR 609
Query: 379 RGKASCGDLDVVIMHP--DRKSHKGFLSKYVKKLKEMKFLREDLIFSTHS---EEVY--- 430
RGK + GD+D++I P D K+H L K +++L++ + DL S E +Y
Sbjct: 610 RGKNTVGDIDILITRPTDDGKTHSRVLYKLLRELRKASIITNDLALPDDSFGLEAIYRGL 669
Query: 431 -----------------------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTG 467
P LI +TG+D+ NR +R+ A+ GY L+ G
Sbjct: 670 CVRTHTNVPHEKRTRRRIDILCVPWASRGAALIYYTGDDLFNRSIRMKADVMGYSLNQRG 729
Query: 468 LFPATYGSGGKQGVRARTS--LKFDTEKEVFDFLGFPWLEPHER 509
L+ K+ V+ + TE+E+F LG PW EPHER
Sbjct: 730 LYAGVVRKPSKRTVKTSPGNIIASSTEEEIFKILGVPWQEPHER 773
>gi|346974983|gb|EGY18435.1| DNA polymerase lambda [Verticillium dahliae VdLs.17]
Length = 815
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 113/359 (31%), Positives = 171/359 (47%), Gaps = 59/359 (16%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N E+ + + Y + + R +Y K I ++++ KI +A + LPG+G + D
Sbjct: 455 NARTIEMLQHMADYYGRINDTWRPIAYRKVISLLKRQTRKIATAAEAIRLPGVGARLADK 514
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EIVTT +L +LEH E+D T+ F ++G+G A A + +GHRTLDDL+ LT
Sbjct: 515 IEEIVTTDRLRRLEHAERDPADETLQQFVRIYGVGNAQASRWIAQGHRTLDDLRAGAVLT 574
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+QR+G+ ++DD+ TRIPR EVE + +++ A + P+V ++ GGSYRRG AS GD+D+
Sbjct: 575 ANQRIGIDHYDDLNTRIPRREVEALAAVVRSAAAALDPDVELIVGGSYRRGAASSGDIDL 634
Query: 390 VIMHPDRKSHK---GFLSKYVKKLKEMKFLREDLIFST---------------------- 424
++ S + FL++ + L+ FL L S
Sbjct: 635 IVTREGTTSARELLPFLAQLTRTLEARGFLVAALATSRDDDAGGSKWHGCCVLPAPDAAR 694
Query: 425 -HSEE---------------------------------VYPRDIYAFGLIAWTGNDVLNR 450
HS E V P L+ +TGND+ NR
Sbjct: 695 LHSSEGEGVGVGSERGFDPGAPSPSPPYRPVWRRIDLLVVPAAELGAALLYFTGNDIFNR 754
Query: 451 RLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+RLLA KG RL+ GL+ G+ V L+ E+ +F L W EPHER
Sbjct: 755 SMRLLAARKGMRLNQRGLYRDVLRGPGRARVTDGALLEGRDERRIFALLDVTWREPHER 813
>gi|322699201|gb|EFY90965.1| DNA polymerase POL4, putative [Metarhizium acridum CQMa 102]
Length = 756
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 110/353 (31%), Positives = 181/353 (51%), Gaps = 38/353 (10%)
Query: 192 FSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE 251
F+ + N P N E+ + + Y + + R+ Y KAI +++ +I
Sbjct: 405 FACNQAGAQDAYQNNP--NSRTIEVLQSMASYYDRVNDHWRTTGYRKAIATLKRQATRIT 462
Query: 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 311
+ ++ LP IG+ + I+EIVTT KL +LE+ + D + +F +++G+G AQ+
Sbjct: 463 TEEEAFQLPHIGRRIAQKIEEIVTTNKLQRLEYAQDDPTDGALQIFLQIYGVGNKQAQQW 522
Query: 312 YEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII 371
+G+RTL+D+K++ L SQR+G +++DD+ TRIPR EVE + ++++A + + +
Sbjct: 523 VCQGYRTLEDIKSKAKLNPSQRVGAEHYDDLNTRIPRREVEALGAVVRRAAARIDAQAEL 582
Query: 372 LCGGSYRRGKASCGDLDVVIMHPDRKS---HKGFLSKYVKKLKEMKFLREDLIFSTHS-- 426
+ GGSYRRG AS D+D+++ D S + FL++ V+ L++ FL L S H+
Sbjct: 583 IIGGSYRRGAASSNDIDLIVTKLDTDSVAQLRPFLNELVRVLEKDGFLTARLA-SFHAGG 641
Query: 427 ------------------EEVY------------PRDIYAFGLIAWTGNDVLNRRLRLLA 456
+E Y P LI +TGND+ NR +RLLA
Sbjct: 642 DGSKWHGCCVLPKTKGINDEDYRPVWRRIDFLLVPASEMGGALIYFTGNDIFNRSMRLLA 701
Query: 457 ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
KG RL+ GL+ G+ V ++ E+++FD LG W EPHER
Sbjct: 702 SKKGMRLNQRGLYKDVIRGPGRVRVTEGELVEGRDERKIFDILGVKWREPHER 754
>gi|10432813|dbj|BAB13852.1| unnamed protein product [Homo sapiens]
Length = 515
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 106/328 (32%), Positives = 171/328 (52%), Gaps = 34/328 (10%)
Query: 133 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 187
SD E+S ++ + S D+E H+ +GD E P + ++ + A
Sbjct: 194 SDDEASDGEETQVSAADLEALISGHYPTSLEGDCE----------PSPAPAVLDKWVCAQ 243
Query: 188 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 247
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 244 PSSQKATNH-------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 290
Query: 248 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307
+ S + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G T
Sbjct: 291 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKT 348
Query: 308 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
AQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA +
Sbjct: 349 AQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNS 408
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 427
++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ S+
Sbjct: 409 GLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLV----SQ 464
Query: 428 EVYPRDIYAFGLIAWTGNDVLNRRLRLL 455
E + G+ G +RRL ++
Sbjct: 465 EENGQQQKYLGVCRLPGPGRRHRRLDII 492
>gi|119570142|gb|EAW49757.1| polymerase (DNA directed), lambda, isoform CRA_a [Homo sapiens]
Length = 514
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 106/328 (32%), Positives = 171/328 (52%), Gaps = 34/328 (10%)
Query: 133 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 187
SD E+S ++ + S D+E H+ +GD E P + ++ + A
Sbjct: 194 SDDEASDGEETQVSAADLEALISGHYPTSLEGDCE----------PSPAPAVLDKWVCAQ 243
Query: 188 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 247
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 244 PSSQKATNH-------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 290
Query: 248 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307
+ S + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G T
Sbjct: 291 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKT 348
Query: 308 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
AQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA +
Sbjct: 349 AQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNS 408
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 427
++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ S+
Sbjct: 409 GLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLV----SQ 464
Query: 428 EVYPRDIYAFGLIAWTGNDVLNRRLRLL 455
E + G+ G +RRL ++
Sbjct: 465 EENGQQQKYLGVCRLPGPGRRHRRLDII 492
>gi|224080955|ref|XP_002186553.1| PREDICTED: DNA polymerase beta-like [Taeniopygia guttata]
Length = 335
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 110/329 (33%), Positives = 178/329 (54%), Gaps = 34/329 (10%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 268
N+ IT+ +L N R + + +Y KA VI + P KI+S + K L G+G + +
Sbjct: 12 NEGITDFLTELANYERNVNRAIHKYNAYRKAASVISRYPSKIQSGAEAKKLDGVGAKIAE 71
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-EDS 327
I E ++TGKL KLE +D+ +I+ V GIGPA A+K E+G +TL+DL+ E
Sbjct: 72 KIDEFLSTGKLRKLEKIRQDDTSASINFLTRVTGIGPAAARKFVEEGIKTLEDLRKIEHK 131
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 387
LTH QR+GLKYF+D + RIPR E+ QM+ ++ K +++ P I GS+RRG S GD+
Sbjct: 132 LTHHQRIGLKYFEDFEKRIPREEMLQMQEIVLKEIKKLDPNYIATVCGSFRRGAESSGDM 191
Query: 388 DVVIMHPDRKSHKG----FLSKYVKKLKEMKFL-------------------REDLIFST 424
DV++ HP S L + V++L+++ F+ +ED
Sbjct: 192 DVLLTHPSFTSESSKQSKLLHQVVEQLEKVHFVTDMLSKGDTKFMGVCQLPDKEDGTAYP 251
Query: 425 HSE---EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGV 481
H + P+D Y G++ +TG+D+ N+ +R A G+ +++ T G GV
Sbjct: 252 HRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRTHALEMGFTINEY-----TIRRLGVTGV 306
Query: 482 RARTSLKFDTEKEVFDFLGFPWLEPHERN 510
A +L + EK++FD++ + + EP +R+
Sbjct: 307 -AGEALPVECEKDIFDYIQWKYREPKDRS 334
>gi|325185752|emb|CCA20232.1| DNA polymerase lambdalike protein putative [Albugo laibachii Nc14]
Length = 621
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 106/330 (32%), Positives = 170/330 (51%), Gaps = 29/330 (8%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
+LN ++T +LI + R SY K + ++ + ++ + ++GL M
Sbjct: 275 NLNSHLTGPLEELIEFLHIEKDQWRVNSYKKVVGSLKVMQVRLSTVKDIQGLWWAKGRMY 334
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
+ E++ TG++ KLE ++ +++T+ F +WG+GP TA KLY+ G RTL DL+ S
Sbjct: 335 SRVAELLETGRMEKLEAKRRNPRLQTMLSFARIWGVGPTTAIKLYDLGFRTLADLEEAGS 394
Query: 328 --LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L+ QR+GL+++DD +IPR EV+Q+E ++ ++LP + GSYRRGK G
Sbjct: 395 SVLSQQQRIGLRHYDDFLKKIPREEVKQIESIVVDEVHQILPRANAMACGSYRRGKEISG 454
Query: 386 DLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLI-FSTHSE----------------- 427
D D++I PD + G L + + +L+ F+ +DL S H
Sbjct: 455 DCDILITDPD-EEECGLLPELLVRLRHKNFITDDLTQVSDHHMGRCDSYMGVCRVNEHLP 513
Query: 428 ------EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGV 481
+VYPR Y F L+ +TG+D NR +RL A+ +GY L D L P SG + +
Sbjct: 514 HRRLDIKVYPRRFYPFALLYFTGSDHFNRSMRLYAKKRGYSLSDRFLKPVMRASGHQ--I 571
Query: 482 RARTSLKFDTEKEVFDFLGFPWLEPHERNL 511
+K E E+F LG + +P ERN
Sbjct: 572 DIGDFVKCTNEAEIFIALGLEYKDPLERNC 601
>gi|322708747|gb|EFZ00324.1| DNA polymerase POL4, putative [Metarhizium anisopliae ARSEF 23]
Length = 756
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 110/352 (31%), Positives = 176/352 (50%), Gaps = 36/352 (10%)
Query: 192 FSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE 251
F+ + N P N E+ + N Y + + R+ Y KAI +++ +I
Sbjct: 405 FACNQAGAQDAFQNNP--NSRTIEVLQSMANYYDRVNDHWRTTGYRKAITTLKRQATRIT 462
Query: 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 311
++ LP IG+ + I+EIVTT KL +LE+ + + + +F ++G+G AQ+
Sbjct: 463 IEEEAFQLPHIGRRIAQKIEEIVTTNKLQRLEYAQDEPMDGALQVFLRIYGVGNKQAQQW 522
Query: 312 YEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII 371
+G+RTL+D+K++ L SQR+G++++DD+ TRIPR EVE + +++A + + +
Sbjct: 523 VSQGYRTLEDIKSKAKLNPSQRVGVEHYDDLNTRIPRREVEALGAFVRRAAARIDAQAEL 582
Query: 372 LCGGSYRRGKASCGDLDVVIMHPDRKS---HKGFLSKYVKKLKEMKFLREDLI------- 421
+ GGSYRRG S GD+D ++ D +S + FL + V+ L++ FL L
Sbjct: 583 IIGGSYRRGSTSSGDIDFIVTKLDTESVAQLRPFLDELVRALEKDGFLTARLASFHAGGD 642
Query: 422 -FSTHSEEVYP-------RDIYAF----------------GLIAWTGNDVLNRRLRLLAE 457
H V P RD LI +TGND+ NR +RLLA
Sbjct: 643 GSKWHGCCVLPKTKGINDRDYRPVWRRIDFLLVPASEMGGALIYFTGNDIFNRSMRLLAS 702
Query: 458 SKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
KG RL+ GL+ G+ V ++ E+++FD LG W EPHER
Sbjct: 703 KKGMRLNQRGLYKDVIRGPGRVRVTEGELVEGRDERKIFDILGVKWREPHER 754
>gi|189188924|ref|XP_001930801.1| DNA polymerase lambda [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187972407|gb|EDU39906.1| DNA polymerase lambda [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 670
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 119/394 (30%), Positives = 184/394 (46%), Gaps = 32/394 (8%)
Query: 148 EDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPD-----FSSHHITDPSL 202
ED + A D E + E P + L+N LS +SA D ++ DP
Sbjct: 275 EDADSLLASGIDDAEDSGTDEEPLVALKPTKLSNILSRSSALRDKKVINMNTFQCMDPGA 334
Query: 203 L-YNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPG 261
YN + N +I ++ Y + + R+ SY K I ++K KI +A+Q LP
Sbjct: 335 NGYNSQNPNARTIQILEEMCKHYDQMQDHWRTLSYRKCINTLKKQTVKITTAEQAIALPF 394
Query: 262 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDD 321
IG + D I+EIV T +L +L+ D + + LF ++G G + A K + G+RTL D
Sbjct: 395 IGTRLADKIEEIVLTVRLRRLDSTRDDPLDKILRLFLGIYGAGLSQANKWIQTGYRTLSD 454
Query: 322 LKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGK 381
L+ + LT SQ++GL+++ D +RIPR EVE ++ A +++ P+ GSYRRG
Sbjct: 455 LETKAKLTPSQKVGLEHYTDFNSRIPRAEVEVHGAVVIAALKKIDPKFKATIMGSYRRGA 514
Query: 382 ASCGDLDVVIMHPDR---KSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE---------- 428
GD+D++I PD V L + FL+ L S ++
Sbjct: 515 KDSGDIDMIITCPDTPLAAMRTTVFEVLVPHLYKTGFLKASLATSRSNDPAGSKWHGASC 574
Query: 429 -------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS 475
+ P + LI +TGND+ NR +RLLA RL+ GL+
Sbjct: 575 LPELTVWRRMDLLLVPEEEMGAALIYFTGNDIFNRSMRLLARKMNMRLNQRGLYKDVKRE 634
Query: 476 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ + ++ EK++F+ LG PW EPHER
Sbjct: 635 ARGEKLNEGVLVEGRNEKKIFETLGVPWREPHER 668
>gi|410923010|ref|XP_003974975.1| PREDICTED: DNA polymerase beta-like [Takifugu rubripes]
Length = 336
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 112/331 (33%), Positives = 177/331 (53%), Gaps = 35/331 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN+ IT+ +L N + + + +Y KA I K P KI + ++ K L G+G +
Sbjct: 11 LNEGITDFLVELANYEKNVNRAIHKYNAYRKAASTISKYPSKIRNGEEAKKLDGVGAKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-ED 326
+ I E + TGKL KLE D+ +I+L V GIGPA A+K +E+G +TL+DLK E
Sbjct: 71 EKIDEFLQTGKLRKLEKIRNDDTSTSINLLTRVTGIGPAAARKFFEEGVKTLEDLKKIEH 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H Q++GL YF++ + RIPR E+E+ME L+ +++ E I GSYRRG AS GD
Sbjct: 131 KLNHHQKIGLMYFEEFEKRIPRVEMEKMESLILGELKKIDTEYIGTICGSYRRGAASSGD 190
Query: 387 LDVVIMHPDRKS----HKGFLSKYVKKLKEMKFLRE-----DLIF--------STHSEEV 429
+D+++ HPD S L V L+ + F+ + D F S EE
Sbjct: 191 IDILLTHPDFTSETEKQPKLLHAVVDHLESIGFVTDTLSKGDTKFMGVCQLQESDDDEEE 250
Query: 430 Y----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQ 479
Y P+D Y G++ +TG+D+ N+ +R A +G+ L++ + P G G
Sbjct: 251 YLHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRTHALDQGFTLNEYTIRPL--GVTGMA 308
Query: 480 GVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
G L ++E+++FD++ + + EP +R+
Sbjct: 309 G----EPLMVNSERDIFDYINYRYREPKDRS 335
>gi|20067677|emb|CAD29080.1| chimeric DNA-directed DNA polymerase bf4-2 [synthetic construct]
Length = 340
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 112/335 (33%), Positives = 188/335 (56%), Gaps = 39/335 (11%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMER---LLQKAGE--EVLPEVIILCGGSYRRGK 381
L H QR+GLKYF+D + I ++ R + G+ ++L + I+ GGS+RRG
Sbjct: 131 KLNHHQRIGLKYFEDFEKLIQGKKIVNHLRSRLAFEYNGQLIKILSKNIVAVGGSFRRGA 190
Query: 382 ASCGDLDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLR-EDLIFS------------- 423
S GD+DV++ HP+ S L + V++L++++F+R + L FS
Sbjct: 191 ESSGDMDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFIRIKGLSFSVKVCGERKCVLFI 250
Query: 424 -----THSEEVY---PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS 475
T+ +++ P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P
Sbjct: 251 EWEKKTYQLDLFTALPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL---- 306
Query: 476 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
G GV A L D+E+++FD++ + + EP +R+
Sbjct: 307 -GVTGV-AGEPLPVDSEQDIFDYIQWRYREPKDRS 339
>gi|396462710|ref|XP_003835966.1| hypothetical protein LEMA_P053070.1 [Leptosphaeria maculans JN3]
gi|312212518|emb|CBX92601.1| hypothetical protein LEMA_P053070.1 [Leptosphaeria maculans JN3]
Length = 794
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 127/402 (31%), Positives = 183/402 (45%), Gaps = 41/402 (10%)
Query: 148 EDVEHFQAESKGDVETNALSEAPN--SPMSSESLTNTLSTASASPD-----FSSHHITDP 200
+D E+F S+ D + + + P P +E + +S ASA D S+ DP
Sbjct: 392 DDDEYFSKVSERDTDDSGTDDEPTKAEPKLAEKFS-FVSKASALRDKGSLKLSAFQCMDP 450
Query: 201 SLL-YNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGL 259
Y + N +I ++ Y + ++ R+ SY K I ++K KI +A Q L
Sbjct: 451 GASGYTSQNPNVRTIQILEEMCKHYDQMQDNWRTLSYRKCIATLKKQSIKITTAKQAIAL 510
Query: 260 PGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTL 319
P IG + D I+EIV T L KL++ D + LF V+G G A K + GHRTL
Sbjct: 511 PTIGHRLADKIEEIVLTDCLRKLDYTRNDPLDTVLRLFLGVYGAGLVQANKWIQAGHRTL 570
Query: 320 DDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRR 379
DL+++ LT Q++GL+++ D RIPR EVE ++ A + P+ + GSYRR
Sbjct: 571 ADLESKAKLTPCQKIGLQHYADFNARIPRAEVEAHANHVRSALRNINPDYEAITMGSYRR 630
Query: 380 GKASCGDLDVVIMHPD---RKSHKGFLSKYVKKLKEMKFLREDLIFST------------ 424
G A GD+D++I PD H + L FL+ L S
Sbjct: 631 GAADSGDVDIIITCPDTPLSTIHSTVFDNLIPHLFTTHFLKASLAASNSHSHSHSTTPSG 690
Query: 425 ---HSEEVYP-----RDI---------YAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTG 467
H P R I LI +TGNDV NR +RLLA +G RL+ G
Sbjct: 691 SKWHGASCLPGSHIWRRIDLLLVPEPEMGAALIYFTGNDVFNRSVRLLARKRGMRLNQRG 750
Query: 468 LFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
LF G Q + ++ E+ +F+ LG PW EP ER
Sbjct: 751 LFRDVERGLGGQRLNEGVLVEGRCERRIFEVLGVPWREPGER 792
>gi|358372916|dbj|GAA89517.1| DNA polymerase Pol4 [Aspergillus kawachii IFO 4308]
Length = 724
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 101/345 (29%), Positives = 168/345 (48%), Gaps = 40/345 (11%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 264
N + N N I ++++ Y+ + R +Y KAI + + P KI + + +PGIG+
Sbjct: 378 NSENPNSNTIAILQQMLDFYKRTNDQWRVLAYRKAISALRRQPRKISTRLEALAIPGIGE 437
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN 324
+ + I+EIV+T L +LE+ + + + LF ++G+G A +G++TL DL+
Sbjct: 438 RIANKIEEIVSTNHLRQLEYATNSREDKILKLFTGIYGVGITQASIWLAEGYKTLGDLRL 497
Query: 325 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 384
+ LTH+QR+G+ ++ D RIPR EVE+ +++KA + P++ ++ GSYRRG C
Sbjct: 498 KIKLTHNQRVGIDHYRDFAQRIPRSEVEEHGEIVRKAVQSADPDMQVIIAGSYRRGAPDC 557
Query: 385 GDLDVVIMHPDRK---SHKGFLSKYVKKLKEMKFLREDLIFSTHSE-------------- 427
GD+D++I PD + + + L+ F++ DL S+ +
Sbjct: 558 GDIDLLITKPDAEIDYIRTVMMRTVIPTLRRQDFIKADLASSSSRDGSKWHGACAIPPPP 617
Query: 428 --------EVY---------------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLD 464
E Y P LI +TGND+ NR +RLLA KG RL+
Sbjct: 618 PPKSDNKWENYFTPTRPWRRIDLLFVPDAEIGAALIYFTGNDIFNRSMRLLASKKGMRLN 677
Query: 465 DTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
GL+ ++ + L+ E+ +FD LG PW P R
Sbjct: 678 QRGLYTDVLRGPQREKINEGRLLEGHDERRIFDILGVPWRPPEHR 722
>gi|194373665|dbj|BAG56928.1| unnamed protein product [Homo sapiens]
Length = 267
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 96/268 (35%), Positives = 147/268 (54%), Gaps = 25/268 (9%)
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE 325
M + I EI+ +G L KL+H E V + LF +WG G TAQ Y++G R+L+D++++
Sbjct: 1 MAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQ 58
Query: 326 DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
SLT Q +GLK++ D R+PR E ++E+ +QKA + ++ + GSYRRGKA+CG
Sbjct: 59 ASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCG 118
Query: 386 DLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE----------------- 428
D+DV+I HPD +SH+G S+ + L++ FL +DL+ + +
Sbjct: 119 DVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRRH 178
Query: 429 ------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVR 482
V P +A L+ +TG+ NR +R LA++KG L + L A + V
Sbjct: 179 RRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVG 238
Query: 483 ARTSLKFDTEKEVFDFLGFPWLEPHERN 510
L TEK+VF LG P+ EP ER+
Sbjct: 239 PGRVLPTPTEKDVFRLLGLPYREPAERD 266
>gi|51860136|gb|AAU11318.1| DNA polymerase beta [Xiphophorus maculatus]
gi|51860138|gb|AAU11319.1| DNA polymerase beta [Xiphophorus maculatus]
Length = 337
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 109/332 (32%), Positives = 175/332 (52%), Gaps = 36/332 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN+ IT+ +L N + + + +Y KA I K P KI++ ++ K L G+G +
Sbjct: 11 LNEGITDFLVELANYEKNVNRAIHKYNAYRKAASTIAKYPNKIKNGEEAKKLDGVGAKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-ED 326
+ I E + TGKL KLE D+ +I+ V GIGPA A+K E+G +TLDDLK E
Sbjct: 71 EKIDEFLQTGKLRKLEKIRNDDTSSSINFLTRVTGIGPAAARKFVEEGVKTLDDLKKVEH 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H Q++GLKYF++ + RIPR E+E+ME L+ +++ PE I GSYRRG AS GD
Sbjct: 131 KLNHHQKIGLKYFEEFEKRIPRVEMEKMEVLILGELKKIDPEYIGTICGSYRRGAASSGD 190
Query: 387 LDVVIMHPDRKSHK----GFLSKYVKKLKEMKFLREDL---------------------- 420
+D+++ HP+ S L V L+ + F+ + L
Sbjct: 191 IDILLTHPNYTSQTEKQPKLLHAVVDHLESVGFVTDTLSKGDTKFMGVCQLQDTDDDEEE 250
Query: 421 --IFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGK 478
+ + P+D Y G++ +TG+D+ N+ +R A KG+ L++ + P G G
Sbjct: 251 EHLHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRTHALEKGFTLNEYTIRPL--GVTGM 308
Query: 479 QGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
G L D+E+++F+++ + + EP +R+
Sbjct: 309 AG----EPLLVDSERDIFEYIQYRYREPKDRS 336
>gi|332027963|gb|EGI68014.1| DNA polymerase beta [Acromyrmex echinatior]
Length = 337
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 113/335 (33%), Positives = 175/335 (52%), Gaps = 34/335 (10%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIG 263
N + N ++ + +L + R + ++ + +Y KA + L +++S ++ K LPGIG
Sbjct: 9 NANNPNHDLCDFLMELADYERNVSKNVYKYNAYRKAAGTLSALTERVKSGEEAKKLPGIG 68
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 323
+ I E + TGKL KLE +KD+ ISL V GIGPA A++L E G +TL+DLK
Sbjct: 69 VKIAKKIDEFLQTGKLQKLEDIKKDDTNVAISLLARVSGIGPAKAKELVESGIKTLEDLK 128
Query: 324 -NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA 382
++D LTH Q+LGLKYFDD + +IPR E+ Q+E++L+ A +E+ ++ GSYRRGK
Sbjct: 129 KHQDKLTHHQKLGLKYFDDFEKKIPRAEIAQIEKVLKNAIKELNSAYLVTICGSYRRGKE 188
Query: 383 SCGDLDVVIMHPDRKSH------KGFLSKYVKKLKEMKFLREDLI--------------- 421
GD+DV++ HPD S K K + + E K L D I
Sbjct: 189 ESGDIDVLVTHPDYISKAKDGKKKAISLKTIVECLEKKKLITDTISLGSTKFMGICQLPE 248
Query: 422 -----FSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSG 476
F + D Y ++ +TG+D+ N+ +R A K Y L++ L T
Sbjct: 249 DKSKPFRRLDIRLTFHDQYYCAILYFTGSDLFNKNMRAHALEKKYTLNEYALKRLTIEG- 307
Query: 477 GKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 511
R + K +E++VF FLG + +P +RN+
Sbjct: 308 -----RPGEAEKITSEEDVFKFLGLSYKDPKDRNI 337
>gi|322790963|gb|EFZ15611.1| hypothetical protein SINV_02512 [Solenopsis invicta]
Length = 341
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 114/335 (34%), Positives = 182/335 (54%), Gaps = 30/335 (8%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIG 263
N + N+++ + +L + R + ++ + +Y KA + L +++S + K LPGIG
Sbjct: 9 NANNPNQDLCDFLMELADYERNVSKNVYKYNAYRKAAGTLGALTERVQSGKEAKKLPGIG 68
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 323
+ + I E + TGKL KLE +KDE +ISL V GIGPA A++L E G +TL+DLK
Sbjct: 69 EKIAKKIDEFLQTGKLQKLE--DKDETNVSISLLARVSGIGPAKAKELVEAGIKTLEDLK 126
Query: 324 -NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA 382
+++ LTH Q+LGLKYFDD + +IPR E+ ++E++L+KA +E+ +I GSYRRGK
Sbjct: 127 KHQNKLTHHQKLGLKYFDDFEKKIPRAEIVEIEKILKKAIKELNSAYLITICGSYRRGKE 186
Query: 383 SCGDLDVVIMHPD------RKSHKGFLSKYVKKLKEMKFLREDLI------------FST 424
GD+DV++ HPD + K K + + E K L D I S
Sbjct: 187 ESGDIDVLVTHPDYISTAKNEKKKTISLKAIVECLEKKKLITDTISLGSTKFMGVCRLSE 246
Query: 425 HSEEVYPR--------DIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSG 476
++ + R D Y ++ +TG+D+ N+ +R A K Y L++ L T
Sbjct: 247 DKDKPFRRLDIRLTFHDQYYCAILYFTGSDLFNKNMRAHALEKKYTLNEYALKRLTTEGR 306
Query: 477 GKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 511
++ + K +E++VF FL P+ EP +RN+
Sbjct: 307 VREISLPGEAEKITSEEDVFKFLDLPYKEPKDRNV 341
>gi|358400608|gb|EHK49934.1| hypothetical protein TRIATDRAFT_51201 [Trichoderma atroviride IMI
206040]
Length = 662
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 109/336 (32%), Positives = 172/336 (51%), Gaps = 36/336 (10%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N E+ K+ + Y + + R+ +Y KAI +++ KI + ++ LP IG+ +
Sbjct: 325 NARTIEMLQKMNSYYERVNDHWRTLAYRKAIGTLKQQTVKITTEEEAYRLPSIGRRLAQK 384
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EIVTT KL +LE+ E++ + F +++G+G AQ+ +G RTLDD+K LT
Sbjct: 385 IEEIVTTDKLKRLEYAEEEPTNSALQTFLKIYGVGNKVAQQWIAQGWRTLDDIKQHVKLT 444
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
SQ +G++++DD+ TRIPR EV + ++++A ++ P V ++ GGSYRRG S D+D
Sbjct: 445 PSQMVGVEHYDDLNTRIPRKEVTALGEVVKRAAAKMDPMVQLIIGGSYRRGAESSHDIDF 504
Query: 390 VIMHPDRKS---HKGFLSKYVKKLKEMKFLREDLIFST--------HSEEVYP------- 431
++ P +S K FL+ V +L+ +FL L S H V P
Sbjct: 505 IVTKPGTESVAHLKSFLNTLVAQLERDEFLVARLASSRAGSDGSKWHGCCVLPKIKGLND 564
Query: 432 -----RDIY-------------AFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATY 473
R I+ LI +TGND+ NR +RLLA KG RL+ GL+
Sbjct: 565 DDEEYRPIWRRIDFLLVPEVELGAALIYFTGNDIFNRSMRLLASKKGMRLNQHGLYRDVL 624
Query: 474 GSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ V ++ E+ +F+ LG W EP ER
Sbjct: 625 RGPDRVKVTEGELVERRDERRIFEILGVTWREPWER 660
>gi|239613353|gb|EEQ90340.1| DNA polymerase POL4 [Ajellomyces dermatitidis ER-3]
Length = 717
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 122/400 (30%), Positives = 193/400 (48%), Gaps = 36/400 (9%)
Query: 141 KKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPD----FSSHH 196
+K+ S EDV+ A + +V++N+ SEA + + ++ +P FS H
Sbjct: 321 EKVLSEEEDVD--TASTIDEVDSNSDSEAEKLNEAKKKKKKKKKRSTGNPQWQQTFSCMH 378
Query: 197 ITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQV 256
D + P N EI K+ Y + + R+ +Y KAI + K +I + +Q
Sbjct: 379 KHDGHTDRDNP--NARTIEILQKMSEYYDRISDQWRTLAYRKAISALRKQKERIVTREQA 436
Query: 257 KGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH 316
+PGIG+ + I+EIV T +L +LE + +S F ++G+G A A K ++G+
Sbjct: 437 VTIPGIGERLAAKIEEIVWTNRLRRLEEANAEPHDVLLSQFLNIYGVGFAQASKWIQQGY 496
Query: 317 RTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGS 376
++LDDLK + SLT +Q++G++++DD RIPR EVE +++K V P V ++ GGS
Sbjct: 497 QSLDDLKAKASLTKNQKIGIEHYDDFCQRIPRAEVEAHGAIVKKLLFTVDPAVQVIIGGS 556
Query: 377 YRRGKASCGDLDVVIMHPDRKSHKGFLSKY----VKKLKEMKFLREDLIFSTHSEE---- 428
YRRG AS GD+D++I D + + + L + FL+ L E
Sbjct: 557 YRRGAASSGDIDLIITK-DGATQAEICALMTDIVIPALFQQNFLQASLAVGRRGESSKWH 615
Query: 429 -------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLF 469
P D LI +TGND+ NR LRLLA KG L+ GLF
Sbjct: 616 GACALPGSKNPVWRRIDFLYVPGDEIGAALIYFTGNDIFNRSLRLLASKKGMCLNQRGLF 675
Query: 470 PATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ + + ++ EK +F+ LG PW P+ R
Sbjct: 676 TGIIRRENRVKLNSGRLIESRDEKRIFEILGVPWRPPNHR 715
>gi|390359622|ref|XP_003729524.1| PREDICTED: DNA polymerase beta-like isoform 1 [Strongylocentrotus
purpuratus]
gi|390359624|ref|XP_787665.3| PREDICTED: DNA polymerase beta-like isoform 2 [Strongylocentrotus
purpuratus]
Length = 339
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 116/322 (36%), Positives = 175/322 (54%), Gaps = 43/322 (13%)
Query: 222 NIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSK 281
N+ RA+ + +Y KA V+ K P KI+S D+ K L GIG + I E++ TGKL K
Sbjct: 29 NVNRAM---HKHNAYRKAASVLAKYPTKIKSGDEAKRLDGIGVQIAKKIDEVIATGKLEK 85
Query: 282 LEHFEKDEKVRTISLFGEVWGIGPATAQKL-YEKGHRTLDDL-KNEDSLTHSQRLGLKYF 339
LE KD+K I+L V GIGP A+KL + G ++DDL KN D L H Q++GL++F
Sbjct: 86 LEKIRKDDKSEAINLLTRVSGIGPVAARKLVMDDGVMSIDDLRKNTDKLNHHQKIGLRHF 145
Query: 340 DDIKTRIPRHEVEQMERLLQ-KAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP---- 394
+D + RIPR EV ++E +L+ + E V +C GSYRRG AS GD+DV++ HP
Sbjct: 146 EDFERRIPREEVTRLEGILKSQVAAEDEDYVATVC-GSYRRGAASSGDMDVLLTHPSYTS 204
Query: 395 -DRKSHKGFLSKYVKKLKEMKFLRE-----DLIF----------STHSEEVY-------- 430
D+K + L VK++ + K + + D F + EE+Y
Sbjct: 205 KDKKKPE-LLVSVVKRMIDSKLVTDTISQGDTKFMGIIRLPEKDAKEGEEIYFRRLDIRL 263
Query: 431 -PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKF 489
P D Y G + +TG+D+ N+ +R A +G+ +++ + P GS G G L
Sbjct: 264 IPHDQYHCGTLYFTGSDMFNKDMRAKALEEGFTINEYTIRP--MGSTGIAG----EPLPV 317
Query: 490 DTEKEVFDFLGFPWLEPHERNL 511
+E++VFD++G + P +RNL
Sbjct: 318 TSEEDVFDYIGMKYKSPSQRNL 339
>gi|398411186|ref|XP_003856936.1| DNA polymerase beta-like protein [Zymoseptoria tritici IPO323]
gi|339476821|gb|EGP91912.1| DNA polymerase beta-like protein [Zymoseptoria tritici IPO323]
Length = 590
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 102/324 (31%), Positives = 163/324 (50%), Gaps = 24/324 (7%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N EI +++ Y ++ RS +Y +AI V+ K P K+ + ++ LP +G+ +
Sbjct: 265 NLATIEILEQMVKYYTDTRDEWRSRAYRQAISVLRKHPTKVMTKEEALKLPKVGERLAAK 324
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EI T +L +L++ + + F V+G G A K ++G+ TLD+L LT
Sbjct: 325 IEEIAVTNRLRRLDNALAEPSDAILQTFMGVYGAGRVVATKWVDQGYTTLDELSKNPDLT 384
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+QR+GL++++D +TRIPR EV Q ++ KA ++ P ++ GGSYRRG GD+D
Sbjct: 385 TNQRIGLEHYEDFQTRIPRAEVAQHGEVVLKALHKIDPTFEVIIGGSYRRGAKDSGDIDC 444
Query: 390 VIMHPDRKS---HKGFLSKYVKKLKEMKFLREDLIFSTHSEE------------------ 428
+I P+ S L + + +L+ KFL L + +
Sbjct: 445 IITRPNTDSTHLRAVVLEQLIPQLESKKFLVASLAATDKDDGSKWHGASCLPGATIWRRI 504
Query: 429 ---VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRART 485
+ P D LI +TGND+ NR +RLLA +KG RL+ GL+ T + + T
Sbjct: 505 DLLLVPSDELGAALIYFTGNDIFNRSMRLLASTKGMRLNQRGLYKDTMRGPKRVKITEGT 564
Query: 486 SLKFDTEKEVFDFLGFPWLEPHER 509
+ EK +F+ LG PW PH R
Sbjct: 565 LAEGKDEKRIFEILGVPWRPPHHR 588
>gi|409075809|gb|EKM76185.1| hypothetical protein AGABI1DRAFT_122771 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 780
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 118/391 (30%), Positives = 192/391 (49%), Gaps = 50/391 (12%)
Query: 153 FQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKN 212
F GD+E A +P + + T T A P +N++
Sbjct: 403 FDESDSGDIEPTADEPSPRVSQNKQKRGWTCDTPQAP---------------KSPCVNQD 447
Query: 213 ITEIFGKLINIYRA-LGEDR--RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
I E +L +++A +G++ R++SY K+I I P +I+S + + + G+G
Sbjct: 448 ILEKLQELQELHKAKVGDEEHWRAYSYNKSIRAIHIYPKRIQSYSEARSIRGVGDKTALK 507
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-- 327
I+EI+ TG L ++ +FEK + V+ LF ++G+G +TA K Y G RTL+DL+++
Sbjct: 508 IKEILQTGDLRRI-NFEKTDDVKVTRLFQGIYGVGQSTAFKWYSAGCRTLEDLRSQKGGV 566
Query: 328 -LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L+ Q +GL+Y+DDI R+PR E + + L++ ++ + GS+RRGKA CGD
Sbjct: 567 RLSSVQMIGLQYYDDINDRMPRSEAKAIFELVKPIALSFDSKLFVEIMGSFRRGKADCGD 626
Query: 387 LDVVIMHP--DRKSHKGFLSKYVKKLKEMKFLREDLIFSTH---SEEVY----------- 430
+D++I P D ++H G L + + L + + EDL + E VY
Sbjct: 627 IDILITRPTDDGQTHSGVLKRLLAALHKGGIITEDLAIPENLADLECVYRGLCRLPSPGS 686
Query: 431 ----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
P + L+ +TG+D+ NR +RL A GY L+ GLF +
Sbjct: 687 RRRRIDFLTVPWESRGAALLYYTGDDIFNRAMRLKANKLGYSLNQRGLFNGVVRDVKDRR 746
Query: 481 VRAR--TSLKFDTEKEVFDFLGFPWLEPHER 509
V+ T + +TE+E+F L PW EPHER
Sbjct: 747 VKLNQGTLVASETEEEIFRILDVPWQEPHER 777
>gi|340923770|gb|EGS18673.1| DNA polymerase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 792
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 102/336 (30%), Positives = 168/336 (50%), Gaps = 36/336 (10%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N E+ + + Y + + RS +Y KAI + + +I +A++ LP IG +
Sbjct: 455 NARTIEVLQAMCDYYTRINDRWRSIAYRKAINTLRRQTVEICTAEEAARLPNIGSRLAAK 514
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EIV+T +L +L++ + + +S F +++G+G A A K +G RTL+DL+ + LT
Sbjct: 515 IEEIVSTNRLRRLDYANDEPTGQILSTFLKIYGVGNAQANKWITQGFRTLEDLRQKADLT 574
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+QR+G++++DD+ +RIPR EVE + +++ + P + +L GGSYRRG S GD+D+
Sbjct: 575 PNQRIGIEHYDDLNSRIPRAEVEALFAYVRREAGAIDPNIELLVGGSYRRGADSSGDIDI 634
Query: 390 VIMHPDRKSH----------------KGFLSKYVKKLKEMKFLREDLIFSTHSEEVYPRD 433
+I +++ KGFL + L + ++ H V P++
Sbjct: 635 IITKKGTRTYGELVHFLEDLITVLGRKGFLVATLAALHTHRPGKDGPGSKWHGCCVLPKE 694
Query: 434 I--------------------YAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATY 473
Y LI +TGN++ NR +RLLA KG RL+ GL+
Sbjct: 695 AGGRDPLVWRRIDFLLVPETEYGAALIYFTGNEMFNRSMRLLAAKKGMRLNQRGLYKEVM 754
Query: 474 GSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
G V +K EK +F+ LG W EP ER
Sbjct: 755 RKKGSVKVTGGELVKGRDEKRIFEILGVKWREPWER 790
>gi|241852129|ref|XP_002415815.1| DNA polymerase beta, putative [Ixodes scapularis]
gi|215510029|gb|EEC19482.1| DNA polymerase beta, putative [Ixodes scapularis]
Length = 338
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 108/328 (32%), Positives = 176/328 (53%), Gaps = 34/328 (10%)
Query: 210 NKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 268
N++I E +L + + + +S +Y KA +EKLP +++SA+ K LPGIG +
Sbjct: 13 NQDICEFLQELAEYEKNVTRNVHKSMAYRKAAATLEKLPERVKSAEAAKELPGIGVKISQ 72
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDS 327
I E + TGK++K+E D+ I V GIGPA A+ L+E+G +DDL K+ S
Sbjct: 73 KIGEFLATGKVAKVEKIRADDSTSAIQDLTRVSGIGPAAARSLFERGISNVDDLRKDPSS 132
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQME-RLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
LT Q++GL++ +D + RIPR EV Q+E R+L + ++C GSYRRG S GD
Sbjct: 133 LTQHQKIGLRHLEDFEKRIPREEVAQLEARILAECRALDEDYEAVVC-GSYRRGLPSSGD 191
Query: 387 LDVVIMHPDRKSHKG-------FLSKYVKKLKEMKFLREDLIFS------------TH-- 425
+D+++ H +S +G L++ ++L+E + + + +H
Sbjct: 192 VDLLVCHKLYRSQEGTDQKPPKLLARLAERLREAGVITDTMSLGGTKFAGVCRLDDSHPY 251
Query: 426 ---SEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVR 482
+ PRD + GL+ +TG+D+ N+ +R A +G+ L + L P GS G G
Sbjct: 252 RRLDMRLLPRDHFFCGLLYFTGSDIFNKSMRAHALQQGFTLSEYALRP--LGSTGVAG-- 307
Query: 483 ARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+ +E++VFD+LG P+ EP +RN
Sbjct: 308 --EPVPVSSERDVFDWLGLPYREPQQRN 333
>gi|193785442|dbj|BAG54595.1| unnamed protein product [Homo sapiens]
Length = 267
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 96/268 (35%), Positives = 146/268 (54%), Gaps = 25/268 (9%)
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE 325
M + I EI+ +G L KL+H E V + LF +WG G TAQ Y++G R+L+D++++
Sbjct: 1 MAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQ 58
Query: 326 DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
SLT Q +GLK++ D R+PR E ++E+ +QKA + ++ + GSYRRGKA+CG
Sbjct: 59 ASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCG 118
Query: 386 DLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE----------------- 428
D+DV+I HPD SH+G S+ + L++ FL +DL+ + +
Sbjct: 119 DVDVLITHPDGWSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRRH 178
Query: 429 ------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVR 482
V P +A L+ +TG+ NR +R LA++KG L + L A + V
Sbjct: 179 RRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVG 238
Query: 483 ARTSLKFDTEKEVFDFLGFPWLEPHERN 510
L TEK+VF LG P+ EP ER+
Sbjct: 239 PGRVLPTPTEKDVFRLLGLPYREPAERD 266
>gi|383859756|ref|XP_003705358.1| PREDICTED: DNA polymerase beta-like [Megachile rotundata]
Length = 337
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 110/331 (33%), Positives = 180/331 (54%), Gaps = 36/331 (10%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 268
N+++ + +L N R + ++ + +Y KA + L +++S + + LPGIG+ +
Sbjct: 14 NQDLCDFLMELANYERNVSKNIYKYNAYRKAAGTLGSLSERVKSGQEARKLPGIGEKIAK 73
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NEDS 327
I E ++TGKL KLE KDE I+L V GIGPA A++L + G +TL+DLK +++
Sbjct: 74 KIDEFLSTGKLQKLEDINKDESNVAINLLTRVSGIGPAKAKELVDNGIKTLNDLKKHQNK 133
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 387
L H Q++GLKYF+D + +IPR E+EQ+E++++ A ++ E I+ GSYRRGK GD+
Sbjct: 134 LNHHQKIGLKYFEDFEKKIPREEIEQIEKIMKDAVTKLSNEYILTICGSYRRGKNESGDI 193
Query: 388 DVVIMHPDRKSHKGFLSKYVKKLKEM--KFLREDLIFST---------------HSEE-- 428
DV++ HP S + K + LK + ++DLI T H++
Sbjct: 194 DVLLTHPTYTSKEKESKKKISLLKNVVECLEKKDLITDTISLGPTKFMGVCHVPHNDNKP 253
Query: 429 -------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPAT-YGSGGKQG 480
+ P D Y ++ +TG+D+ N+ +R A K Y L++ L T G+ GK
Sbjct: 254 QRRLDIRLAPYDQYYCAVLYFTGSDLFNKNMRAHALEKNYTLNEYTLKRLTPEGTPGKPE 313
Query: 481 VRARTSLKFDTEKEVFDFLGFPWLEPHERNL 511
+ E+++F LG P+ EP +RNL
Sbjct: 314 I-------ITCEEDIFRILGLPYKEPKDRNL 337
>gi|70995309|ref|XP_752414.1| DNA polymerase POL4 [Aspergillus fumigatus Af293]
gi|66850049|gb|EAL90376.1| DNA polymerase POL4, putative [Aspergillus fumigatus Af293]
gi|159131169|gb|EDP56282.1| DNA polymerase POL4, putative [Aspergillus fumigatus A1163]
Length = 702
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 107/333 (32%), Positives = 169/333 (50%), Gaps = 27/333 (8%)
Query: 201 SLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLP 260
S L NP N E+ ++++ Y + R+ +Y KAI + + P KI + Q +P
Sbjct: 371 SNLDNP---NCKTIEVLQQMLDYYTRTSDQWRTLAYRKAIAALRRQPRKIVTRAQALAIP 427
Query: 261 GIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLD 320
GIG + D I+EIV T +L +LE + + F V+G G + A + +G+RTLD
Sbjct: 428 GIGPRLADKIEEIVFTNRLRRLESTNNRPEDLILQEFLGVYGAGISQASRWIAQGYRTLD 487
Query: 321 DLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRG 380
DLK + +LT SQR+G++++ D RIPR EVE +++KA ++ P + ++ GGSYRRG
Sbjct: 488 DLKTKAALTRSQRIGVEHYHDFAQRIPRREVEAHGEIVRKAVQKADPGMQVIIGGSYRRG 547
Query: 381 KASCGDLDVVIMHPDRKSHK---GFLSKYVKKLKEMKFLREDLIFST-------HSEEVY 430
+ GD+D++I D + + + +L + FL+ L ++ H V
Sbjct: 548 ASDSGDIDLLITKDDATIEQITTMMMDTVIPRLFQDGFLQVSLASTSRGDGSKWHGASVL 607
Query: 431 P-----RDI---------YAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSG 476
P R I LI +TGND+ NR +RLLA KG RL+ GL+
Sbjct: 608 PGSKIWRRIDLLFVPGSEIGAALIYFTGNDIFNRSMRLLASKKGMRLNQRGLYADVQCGE 667
Query: 477 GKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
++ + L+ E+ +F+ LG PW P R
Sbjct: 668 QRRKLSEGRLLEGRNERRIFEILGVPWRPPEHR 700
>gi|255588188|ref|XP_002534528.1| DNA polymerase lambda, putative [Ricinus communis]
gi|223525109|gb|EEF27858.1| DNA polymerase lambda, putative [Ricinus communis]
Length = 126
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 87/126 (69%), Positives = 91/126 (72%), Gaps = 27/126 (21%)
Query: 413 MKFLREDLIFSTHSEE---------------------------VYPRDIYAFGLIAWTGN 445
MKFLREDL+FS HSEE VYPRDIYAFGLIAWTGN
Sbjct: 1 MKFLREDLVFSIHSEEGTDSGVDTYFGLCTYPGRGLRHRIDFKVYPRDIYAFGLIAWTGN 60
Query: 446 DVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLE 505
DVLNRRLRLLAESKG+RLDDTGLFPAT S GK+G RA SL+ DTEKEVFDFLGFPWLE
Sbjct: 61 DVLNRRLRLLAESKGFRLDDTGLFPATQASAGKRGSRATASLRLDTEKEVFDFLGFPWLE 120
Query: 506 PHERNL 511
PHERNL
Sbjct: 121 PHERNL 126
>gi|449544000|gb|EMD34974.1| hypothetical protein CERSUDRAFT_157745 [Ceriporiopsis subvermispora
B]
Length = 697
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 178/333 (53%), Gaps = 34/333 (10%)
Query: 210 NKNITEIFGKLINIYR---ALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSM 266
N+++ E +L+ ++R ++ + R +SY KAI + + P +I S +Q +G+ G+G
Sbjct: 363 NQDVVEKLEQLMELHRTKSSMEDHWRVYSYGKAIRALRQHPRRITSYEQARGIDGVGDKT 422
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL---K 323
I EI++TG+L +L+ FEK + TI+LF ++G+G TA+K Y +G RTL DL K
Sbjct: 423 AQKIMEIISTGELRRLD-FEKTDDAETITLFQGIYGVGLNTARKWYNRGCRTLQDLNEGK 481
Query: 324 NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKAS 383
L+H Q++G+ Y+ DI +R+PR E ++ ++ + P + I GSYRRG+
Sbjct: 482 GGVQLSHVQQIGVNYYADINSRMPRAEATEIFERVKTIALRLDPRLFIEILGSYRRGEPD 541
Query: 384 CGDLDVVIMHP--DRKSHKGFLSKYVKKLKEMKFLREDLIFS---THSEEVY----PRDI 434
CGD+DV+I P D K+H+G L + + +L L EDL E VY RD
Sbjct: 542 CGDIDVLITRPTDDGKTHRGLLRRLLGELHAQGILTEDLCLPDDFNDLELVYRGLCRRDA 601
Query: 435 YA----------------FGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATY--GSG 476
Y+ L+ +T + NR LR+ A G+ L+ GLF S
Sbjct: 602 YSTRRRIDFLTIPYESRGAALLYYTSDPQFNRSLRMKANVMGFALNQRGLFAGVVRNPSD 661
Query: 477 GKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+Q + T + +TE+E+F LG PW EPHER
Sbjct: 662 KRQKLSDGTCVASETEREIFRILGVPWQEPHER 694
>gi|336390929|dbj|BAK40156.1| DNA polymerase beta [Tribolium castaneum]
Length = 330
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 160/299 (53%), Gaps = 32/299 (10%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
+Y KA V+ P +I S + K L GIG+ + I E + TGKL KL++ D K I
Sbjct: 40 AYRKAASVLSSHPTRITSGQEAKKLNGIGEKIAKKIDEFLQTGKLQKLDNIHNDSKTTAI 99
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQ 353
+L +V GIGPA AQ L +G +L+DL K++D L H Q +GLKY+ D + +IPR+E++Q
Sbjct: 100 NLLTQVTGIGPAKAQTLVSEGITSLEDLEKHKDKLNHHQLIGLKYYHDFQQKIPRNEIKQ 159
Query: 354 MERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDR-----KSHKGFLSKYVK 408
+E L++ E P++ + GSYRRGK GD+D +I HP+ K + L V
Sbjct: 160 IENLIRGHLE---PQIHLTICGSYRRGKQQSGDIDALITHPNYTSSQPKKKQNLLKNVVT 216
Query: 409 KLKEMKFLRE-----DLIFSTHSE------------EVYPRDIYAFGLIAWTGNDVLNRR 451
L+ + E D F + + P D Y ++ +TG+D+ N++
Sbjct: 217 ALQNCGLITEIISLGDTKFMGACKLDKNSITRRLDIRLTPFDQYFCAVLYFTGSDMFNKQ 276
Query: 452 LRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+R A G+ L++ L P GS G G L+ +E+++FD +GFP+ EP +RN
Sbjct: 277 MRAHALDAGFTLNEYTLRPV--GSTGVPG----EPLEIHSERDIFDCIGFPYKEPQDRN 329
>gi|330928274|ref|XP_003302196.1| hypothetical protein PTT_13924 [Pyrenophora teres f. teres 0-1]
gi|311322563|gb|EFQ89686.1| hypothetical protein PTT_13924 [Pyrenophora teres f. teres 0-1]
Length = 771
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 119/394 (30%), Positives = 179/394 (45%), Gaps = 32/394 (8%)
Query: 148 EDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPD-----FSSHHITDPSL 202
ED + A D E + E P + LT L ASA D ++ DP
Sbjct: 376 EDADSPLASGIDDAEDSGTDEEPPVALRPTKLTKFLFKASALRDKKDINMNAFQCIDPGA 435
Query: 203 L-YNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPG 261
YN + N +I ++ Y + + RS SY K I ++K KI +A Q LP
Sbjct: 436 NGYNSQNPNARTIQILEEMCRYYDQMQDHWRSLSYRKCINTLKKQTVKITTAKQAIALPF 495
Query: 262 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDD 321
IG + D I+EIV T +L +L+ D + + LF ++G G A K + G+ TL D
Sbjct: 496 IGSRLADKIEEIVLTDRLRRLDSTRDDPLDKILRLFLGIYGAGLFQANKWIQAGYHTLSD 555
Query: 322 LKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGK 381
L+ + LT SQ++GL+++DD +RIPR EVE ++ A +++ GSYRRG
Sbjct: 556 LETKAKLTPSQKIGLEHYDDFNSRIPRAEVEAHGAVVIAALKKIDTNFKATIMGSYRRGA 615
Query: 382 ASCGDLDVVIMHPDRK---SHKGFLSKYVKKLKEMKFLREDLIFSTHSEE---------- 428
GD+D++I PD V L + FL+ L S ++
Sbjct: 616 KDSGDIDMIITCPDTSLAAMRTTVFEVLVPHLYKTGFLKASLATSRSNDPAGSKWHGASC 675
Query: 429 -------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS 475
+ P + LI +TG+D+ NR +RLLA G RL+ GL+
Sbjct: 676 LPKSTVWRRMDLLLVPEEEMGAALIYFTGDDIFNRSMRLLARKMGMRLNQRGLYKDVKRG 735
Query: 476 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ + ++ EK++F+ LG PW EPHER
Sbjct: 736 ARGEKLNEGVLVEGRNEKKIFEILGVPWREPHER 769
>gi|115491397|ref|XP_001210326.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114197186|gb|EAU38886.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 622
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 108/336 (32%), Positives = 167/336 (49%), Gaps = 38/336 (11%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 264
N + N E+ ++++ Y + R +Y K I + K +I + Q +PGIG
Sbjct: 292 NSDNPNGRTIEVLQQMLDYYTRTDDHWRLLAYRKTISALRKQSNRITTRTQALAIPGIGT 351
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN 324
+ D I+EIV T +L +LE+ + R + F V+G G + A + +G+R+L+DLK
Sbjct: 352 RLADKIEEIVYTDRLRRLENTSTTPEDRILQKFMGVYGAGLSQASRWLAQGYRSLEDLKA 411
Query: 325 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 384
+ LT +QR+G+ ++DD RIPR EVE ++++A +V P + ++ GSYRRG A
Sbjct: 412 KAHLTQAQRIGVDHYDDFLQRIPRKEVEMHGEIVRRAVVKVNPGMQVIISGSYRRGAADS 471
Query: 385 GDLDVVIMHPDRKS----------------HKGFL------------SKY--VKKLKEMK 414
GD+DV+I PD +GFL SK+ KL + +
Sbjct: 472 GDIDVLITQPDATIEQIRAMMMDTVIPDLFQQGFLQASLAVTSRGDGSKWHGASKLPDSR 531
Query: 415 FLRE-DLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATY 473
R DL+F SE LI +TGND+ NR +RLLA KG RL+ GL+
Sbjct: 532 VWRRLDLLFVPGSE-------IGAALIYFTGNDIFNRSMRLLARKKGMRLNQRGLYADVL 584
Query: 474 GSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ + A L+ E+ +F+ LG PW P +R
Sbjct: 585 RGPQQTKMNAGRLLEGRDERRIFEILGVPWRPPEQR 620
>gi|327351852|gb|EGE80709.1| DNA polymerase POL4 [Ajellomyces dermatitidis ATCC 18188]
Length = 720
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 124/424 (29%), Positives = 194/424 (45%), Gaps = 38/424 (8%)
Query: 113 EGENIADRVLSQIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNS 172
+G +I D ++ Q + + D S+ ++V+ S D E L+EA
Sbjct: 306 KGHDILDELIKQARAEKDLPLDQSEEEDVDTASTIDEVD-----SNSDSEAEKLNEAKKK 360
Query: 173 PMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRR 232
+ T FS H D + P N EI K+ Y + + R
Sbjct: 361 KKKKKRSTGNPQWQQT---FSCMHKHDGHTDRDNP--NARTIEILQKMSEYYDRISDQWR 415
Query: 233 SFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVR 292
+ +Y KAI + K +I + +Q +PGIG+ + I+EIV T +L +LE +
Sbjct: 416 TLAYRKAISALRKQKERIVTREQAVTIPGIGERLAAKIEEIVWTNRLRRLEEANAEPHDV 475
Query: 293 TISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVE 352
+S F ++G+G A A K ++G+++LDDLK + SLT +Q++G++++DD RIPR EVE
Sbjct: 476 LLSQFLNIYGVGFAQASKWIQQGYQSLDDLKAKASLTKNQKIGIEHYDDFCQRIPRAEVE 535
Query: 353 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY----VK 408
+++K V P V ++ GGSYRRG AS GD+D++I D + + +
Sbjct: 536 AHGAIVKKLLFTVDPAVQVIIGGSYRRGAASSGDIDLIITK-DGATQAEICALMTDIVIP 594
Query: 409 KLKEMKFLREDLIFSTHSEE-----------------------VYPRDIYAFGLIAWTGN 445
L + FL+ L E P D LI +TGN
Sbjct: 595 ALFQQNFLQASLAVGRRGESSKWHGACALPGSKNPVWRRIDFLYVPGDEIGAALIYFTGN 654
Query: 446 DVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLE 505
D+ NR LRLLA KG L+ GLF + + + ++ EK +F+ LG PW
Sbjct: 655 DIFNRSLRLLASKKGMCLNQRGLFTGIIRRENRVKLNSGRLIESRDEKRIFEILGVPWRP 714
Query: 506 PHER 509
P+ R
Sbjct: 715 PNHR 718
>gi|426193747|gb|EKV43680.1| hypothetical protein AGABI2DRAFT_227537 [Agaricus bisporus var.
bisporus H97]
Length = 695
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 110/339 (32%), Positives = 179/339 (52%), Gaps = 37/339 (10%)
Query: 207 PDLNKNITEIFGKLINIYRA-LGEDR--RSFSYYKAIPVIEKLPFKIESADQVKGLPGIG 263
P +N++I E +L +++A +G++ R++SY K+I I P +I+S + + + G+G
Sbjct: 355 PCVNQDILEKLQELQELHKAKIGDEEHWRAYSYNKSIRAIHIYPKRIQSYSEARSIRGVG 414
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPA--TAQKLYEKGHRTLDD 321
I+EI+ TG L ++ +FEK + V+ LF ++G+G TA K Y G RTL+D
Sbjct: 415 DKTALKIKEILQTGDLRRI-NFEKTDDVKVTRLFQGIYGVGKCQSTAFKWYSAGCRTLED 473
Query: 322 LKNEDS---LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYR 378
L+++ L+ Q +GL+Y+DDI R+PR E + + L++ ++ + GS+R
Sbjct: 474 LRSQKGGVRLSSVQMIGLQYYDDINDRMPRSEAKALFELVKPIALSFDSKLFVEIMGSFR 533
Query: 379 RGKASCGDLDVVIMHP--DRKSHKGFLSKYVKKLKEMKFLREDLIFSTHS---EEVY--- 430
RGKA CGD+D++I P D ++H G L + + L + + EDL +S E VY
Sbjct: 534 RGKADCGDIDILITRPTDDGQTHSGVLKRLLAALHKGGIITEDLAIPENSADLECVYRGL 593
Query: 431 ------------------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPAT 472
P + L+ +TG+D+ NR +RL A GY L+ GLF
Sbjct: 594 CRLPSPGSRRRRIDFLTVPWESRGAALLYYTGDDIFNRAMRLKANKLGYSLNQRGLFNGV 653
Query: 473 YGSGGKQGVRAR--TSLKFDTEKEVFDFLGFPWLEPHER 509
+ V+ T + +TE+E+F L PW EPHER
Sbjct: 654 VRDVKDRRVKLNQGTLVASETEEEIFRILNVPWQEPHER 692
>gi|302662510|ref|XP_003022908.1| DNA polymerase POL4, putative [Trichophyton verrucosum HKI 0517]
gi|291186880|gb|EFE42290.1| DNA polymerase POL4, putative [Trichophyton verrucosum HKI 0517]
Length = 652
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 139/533 (26%), Positives = 238/533 (44%), Gaps = 68/533 (12%)
Query: 32 QNRRLQIWRQKLVQMGATVEEKLSKKVTHVLA---MDLEALLQQVSKQHLA--------R 80
Q RR++I R +++ GAT K VTH++A ++ E +++ + +
Sbjct: 131 QARRIRISR--VLKFGATRAAKFDASVTHIVAERRLNYEDVVEYLQVSSVPANIILVNEN 188
Query: 81 FKGSVIRYQWLEDSLRLGEKVSEDLYRIKL----DPEGENIADRVLSQIQGNGNTSSD-- 134
+ I + + D+ S ++IK +P G + +R I N + +D
Sbjct: 189 YPSECIMNRRILDA-------SSPRFQIKRKLLSEPHGISSGERRHDCIPANSSRGTDSK 241
Query: 135 --GESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTN----------- 181
G+ S + + + F A+ D + + L+ + P+ S +
Sbjct: 242 KVGDRSTEEAVPILPGHLPDFPAKDTADQDVDQLTYS--KPLDSSDEEDDEIVPGGFQSG 299
Query: 182 -TLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAI 240
T S F+ + D + P N E+ +++N Y + R +Y +AI
Sbjct: 300 LTTDCPSWQKSFTCMNKMDGKDRADNP--NARTIEVLQQMLNYYERTADQWRCLAYRRAI 357
Query: 241 PVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEV 300
+ + K+ S Q + GIG+ + I+EIV T +L +LE + +S F +
Sbjct: 358 AALRRERNKVVSKSQALKIKGIGERLAAKIEEIVWTNRLRRLEQANMEPSDALLSQFLNI 417
Query: 301 WGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQK 360
+G+G A K +G+++LDDLKN +LT +Q++G++ +DD + RIPR EVE ++++
Sbjct: 418 YGVGYQQASKWVAQGYKSLDDLKNRANLTTNQKIGIERYDDFQKRIPREEVEAHGAIVRE 477
Query: 361 AGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD---RKSHKGFLSKYVKKLKEMKFLR 417
A + ++ GGSYRRG A GD+D++I ++ H ++ V +L E FL+
Sbjct: 478 AVVAMDSSYTVITGGSYRRGAADSGDIDLIITKEGVSLQEIHDQIMTVVVPQLFERGFLK 537
Query: 418 EDLIFSTHSEE---------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLA 456
L S+ ++ P D LI +TGND+ NR LRLLA
Sbjct: 538 TGLAVSSRADGSKWHGASALPGNPVWRRIDLLFVPGDELGAALIYFTGNDIFNRSLRLLA 597
Query: 457 ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
KG L+ GLF G+ + A L+ EK +F+ L PW P R
Sbjct: 598 SKKGMCLNQRGLFSDIMRGPGRVKLNAGHLLESRDEKRIFELLAVPWRPPEHR 650
>gi|451998887|gb|EMD91350.1| hypothetical protein COCHEDRAFT_1175174 [Cochliobolus
heterostrophus C5]
Length = 756
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 113/366 (30%), Positives = 180/366 (49%), Gaps = 42/366 (11%)
Query: 181 NTLSTASASPD-----FSSHHITDPS----LLYNPPDLNKNITEIFGKLINIYRALGEDR 231
+ LS ASA D +S DPS + +NP N +I ++ Y ++ +
Sbjct: 394 SVLSKASALRDKKYFNMNSFQCMDPSSSNHISWNP---NARTIQILEEMCKYYDSMQDQW 450
Query: 232 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
R+ SY K + ++K KI +A+Q LP IG + I+EIV T +L +LE + +
Sbjct: 451 RTLSYRKCVATLKKQTVKITTAEQAAKLPSIGTHLAAKIEEIVLTDRLRRLESTRHNPQD 510
Query: 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEV 351
+ LF ++G+G A K + GHRTL DLK + +L+ +Q++GL+++ D +RIPR EV
Sbjct: 511 VALRLFLGIYGVGLVHANKWIQAGHRTLQDLKTKATLSENQKIGLEHYHDFNSRIPRAEV 570
Query: 352 EQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKS---HKGFLSKYVK 408
E ++ A +E+ PE GSYRRG GD+D+++ P+ S +
Sbjct: 571 EAHGAIVAAALKEIDPEFSATIMGSYRRGAQDSGDIDIMLSRPNMSSTAMSTTIFEVLIP 630
Query: 409 KLKEMKFLREDLIF---------------STHSEEVY--------PRDIYAFGLIAWTGN 445
L + FL+ L S S V+ P L+ +TG+
Sbjct: 631 HLYKTGFLKASLTSSRYSDSSNSKWHGASSLPSSTVWRRIDFLVVPEQEMGAALLYFTGD 690
Query: 446 DVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFD--TEKEVFDFLGFPW 503
D+ NR +RLLA KG +L+ GL+ T G++G + + + +E+ +F+ LG PW
Sbjct: 691 DIFNRSMRLLARKKGMKLNQRGLY--TDVLRGRKGEKLNDGVLIEGRSERRIFEILGVPW 748
Query: 504 LEPHER 509
EP ER
Sbjct: 749 REPGER 754
>gi|357627529|gb|EHJ77195.1| hypothetical protein KGM_16934 [Danaus plexippus]
Length = 331
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 111/336 (33%), Positives = 174/336 (51%), Gaps = 42/336 (12%)
Query: 207 PDLNKNITEIFGKLI--------NIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKG 258
P N N+ F + N+ R + + +Y KA V+ +IES Q K
Sbjct: 7 PSTNNNVNADFCDFLMELADYEKNVSRNI---HKYNAYRKAASVLAAHHKRIESGQQAKK 63
Query: 259 LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRT 318
L G+G+ + I E + TGKL KLE+ DEK + ISL V GIGP A L +KG +T
Sbjct: 64 LNGVGEKISKKIDEFLQTGKLRKLENIHNDEKAQAISLLTRVSGIGPVKAADLIDKGIKT 123
Query: 319 LDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSY 377
L+DL KN+D L H Q +GLKYF++ + +IPR E++++E +++K ++ + I GSY
Sbjct: 124 LEDLNKNQDLLNHHQLIGLKYFENFEEKIPREEIQKIEAIIKKNILDLDCDYTITICGSY 183
Query: 378 RRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE---------- 427
RRG + GD+DV++ HP K K + + K LKE+K +LI S
Sbjct: 184 RRGASQSGDIDVLVTHPTMKLDKEKIGE--KLLKEIKEALGELIVDVISMGATKFMGVCR 241
Query: 428 ------------EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS 475
+ P + Y ++ +TG+DV N+ +R A K + L++ L P
Sbjct: 242 LSDGHLNRRLDIRLIPNEQYHCAVLYFTGSDVFNKNMRAHALEKRFTLNEYSLRPI---- 297
Query: 476 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 511
G GV + + +E+++FD++ +P+ +P ERNL
Sbjct: 298 -GVTGVHGQ-PVPITSEEDIFDYIDYPYKKPEERNL 331
>gi|20067705|emb|CAD29094.1| chimeric DNA-directed DNA polymerase bf4-3a [synthetic construct]
Length = 335
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 114/337 (33%), Positives = 177/337 (52%), Gaps = 49/337 (14%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPR--HEVEQMERLLQKAGEEVLPEVI------ILCGGSYR 378
L H QR+GLKYF+D + RIPR + + L + E ++I I+ GS+R
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPRLIQGKKIVNHLRSRLAFEYNGQLIKILSKNIVAVGSFR 190
Query: 379 RGKASCGDLDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL------------IF 422
RG S GD+DV++ HP+ S L + V++L++++F+ + L +
Sbjct: 191 RGAESSGDMDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFITDTLSKGETKFMGVCQLP 250
Query: 423 STHSEEVY----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPAT 472
S + E Y P+D Y G++ +TG+D+ N+ +R A Y+L+ GLF
Sbjct: 251 SENDENEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHA---NYKLNQYGLFKN- 306
Query: 473 YGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ LK TEKE+ LGF + P +R
Sbjct: 307 ---------QTLVPLKITTEKELIKELGFTYRIPKKR 334
>gi|391865336|gb|EIT74620.1| DNA polymerase IV [Aspergillus oryzae 3.042]
Length = 704
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 102/331 (30%), Positives = 170/331 (51%), Gaps = 28/331 (8%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 264
N + N+ ++ ++++ Y + R+ +Y KAI + + P KI + Q +PG+G
Sbjct: 374 NSENPNRRTIDVLQQMLDYYARTDDHWRTLAYRKAISALRRQPKKILTKSQALAIPGVGP 433
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN 324
+ D I+EIV T +L +LE+ + + F V+G G + A + +G+R+L+DL+
Sbjct: 434 RLADKIEEIVCTNRLRRLENTNLTREDIILQEFLGVYGAGISQASRWLAQGYRSLEDLRT 493
Query: 325 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 384
+ SLT Q +G+ ++ D RIPR EVE ++++ ++ P + ++ GSYRRG A C
Sbjct: 494 KASLTPQQEIGVDHYHDFSQRIPRKEVETHGEIVKRVVQKADPGMQVIIAGSYRRGAADC 553
Query: 385 GDLDVVIMHPD---RKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE-------------E 428
GD+D++I PD + + V KL + FL+ L ++ + +
Sbjct: 554 GDIDLLITKPDATIEQIRALMIDVVVPKLFKRGFLQASLAITSRGDGSKWHGASLAPGGQ 613
Query: 429 VYPRDIYAF--------GLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
++ R F LI +TGND+ NR +RLLA KG RL+ GL+ T G Q
Sbjct: 614 IWRRIDLLFVPGSEIGAALIYFTGNDIFNRSMRLLASKKGMRLNQRGLY--TDVLRGPQR 671
Query: 481 VRARTS--LKFDTEKEVFDFLGFPWLEPHER 509
V+ T L+ E+ +F+ LG PW P R
Sbjct: 672 VKLNTGRLLEGRDERRIFEILGVPWRPPEHR 702
>gi|350412147|ref|XP_003489556.1| PREDICTED: DNA polymerase beta-like [Bombus impatiens]
Length = 336
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 110/329 (33%), Positives = 173/329 (52%), Gaps = 35/329 (10%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 268
N+++ + +L N R + + + +Y KA + L +++S + + LPGIG+ +
Sbjct: 14 NQDLCDFLMELANYERNVSNNIYKYNAYRKAASTLSTLSERVKSGQEARKLPGIGEKIAK 73
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NEDS 327
I E + TGKL KLE KDE I+L V GIGP A++L + G +TLDDLK +++
Sbjct: 74 KIDEFLNTGKLQKLEDINKDESNVAINLLTRVSGIGPTKAKELVDSGIKTLDDLKKHQEK 133
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 387
L H Q++GLKYF+D + RIPR E+EQ+E++++ + ++ E II GSYRRGK GD+
Sbjct: 134 LNHHQKIGLKYFEDFEKRIPRKEIEQIEKIIKDSIVKLNKEYIITICGSYRRGKEESGDI 193
Query: 388 DVVIMHPDRKS------------------HKGFLSKYVKKLKEMKFLREDLIFSTHSE-- 427
DV++ HP S K L L + KF+ I S + +
Sbjct: 194 DVLLTHPTYTSKEKESKKKTSLKDVVECLEKRKLIVNTISLGQTKFMGVCQIPSNNKKPF 253
Query: 428 -----EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPAT-YGSGGKQGV 481
+ P D Y ++ +TGND+ N+ +R A K Y L++ L T G+ G+
Sbjct: 254 RRLDIRLTPYDQYYCAVLYFTGNDLFNKSMRAHALEKNYTLNEYTLKRLTPEGTPGE--- 310
Query: 482 RARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+ K E+++F L FP+ EP +RN
Sbjct: 311 ----AEKISCEEDIFRILKFPYKEPKDRN 335
>gi|20067699|emb|CAD29091.1| chimeric DNA-directed DNA polymerase bf4-18 [synthetic construct]
Length = 338
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 112/333 (33%), Positives = 182/333 (54%), Gaps = 37/333 (11%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPR--HEVEQMERLLQKAGEEVLPEVII-----LCGGSYRR 379
L H QR+GLKYF+D + RIPR + + L + E ++I + GS+RR
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPRLIQGKKIVNHLRSRLAFEYNGQLIKILSKNIVAGSFRR 190
Query: 380 GKASCGDLDVVIMHPDRKSHKG----FLSKYVKKL--KEMKFL------REDLIFSTHSE 427
G S GD+DV++ HP+ S L + V++L K + F R+ ++F +
Sbjct: 191 GAESSGDMDVLLTHPNFTSESSKQPKLLHRVVEQLRIKGLSFSVKVCGERKCVLFIEWEK 250
Query: 428 EVY----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGG 477
+ Y P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P G
Sbjct: 251 KTYQLDLFTALAEPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----G 305
Query: 478 KQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
GV A L D+E+++FD++ + + EP +R+
Sbjct: 306 VTGV-AGEPLPVDSEQDIFDYIQWRYREPKDRS 337
>gi|121701899|ref|XP_001269214.1| DNA polymerase POL4, putative [Aspergillus clavatus NRRL 1]
gi|119397357|gb|EAW07788.1| DNA polymerase POL4, putative [Aspergillus clavatus NRRL 1]
Length = 677
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 99/324 (30%), Positives = 165/324 (50%), Gaps = 24/324 (7%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N + ++++ Y + R +Y KAI + + P KI + Q + +PGIG + D
Sbjct: 352 NTRTIGVLQQMLDYYTRTSDHWRVLAYRKAIAALRRQPKKIATRAQARAVPGIGPRLADK 411
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
++EIV T +L +LE+ + + F V+G G + A + +G+R+L+DLK + +LT
Sbjct: 412 VEEIVFTNRLRRLENANDTAEDLALQEFLGVYGAGISQASRWVAQGYRSLEDLKTKATLT 471
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
SQR+G+ ++ D RIPR EVE ++QKA + P + ++ GSYRRG + GD+D+
Sbjct: 472 KSQRVGVDHYYDFSQRIPRKEVEAHGSIVQKAVHKTNPGMQVIISGSYRRGASDSGDIDL 531
Query: 390 VIMHPD---RKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE-------------EVYPRD 433
+I PD + + + +L + FL+ L ++ S+ +++ R
Sbjct: 532 LITKPDATIEQIRTMMIEVVIPQLFQEGFLQVSLASTSRSDGSKWHGASMLPGSKIWRRI 591
Query: 434 IYAF--------GLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRART 485
F LI +TGND+ NR +RLLA KG RL+ GL+ ++ +
Sbjct: 592 DLLFVPGSEIGAALIYFTGNDIFNRSMRLLASKKGMRLNQRGLYADVLRGEQRKKLNEGR 651
Query: 486 SLKFDTEKEVFDFLGFPWLEPHER 509
L+ E+ +FD LG PW P R
Sbjct: 652 LLEGRNERRIFDILGVPWRPPEHR 675
>gi|91085421|ref|XP_967990.1| PREDICTED: similar to DNA polymerase beta [Tribolium castaneum]
gi|270009161|gb|EFA05609.1| hypothetical protein TcasGA2_TC015815 [Tribolium castaneum]
Length = 1080
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 160/299 (53%), Gaps = 32/299 (10%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
+Y KA V+ P +I S + K L GIG+ + I E + TGKL KL++ D K I
Sbjct: 790 AYRKAASVLSSHPTRITSGQEAKKLNGIGEKIAKKIDEFLQTGKLQKLDNIHNDSKTTAI 849
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQ 353
+L +V GIGPA AQ L +G +L+DL K++D L H Q +GLKY+ D + +IPR+E++Q
Sbjct: 850 NLLTQVTGIGPAKAQTLVSEGITSLEDLEKHKDKLNHHQLIGLKYYHDFQQKIPRNEIKQ 909
Query: 354 MERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDR-----KSHKGFLSKYVK 408
+E L++ E P++ + GSYRRGK GD+D +I HP+ K + L V
Sbjct: 910 IENLIRGHLE---PQIHLTICGSYRRGKQQSGDIDALITHPNYTSSQPKKKQNLLKNVVT 966
Query: 409 KLKEMKFLRE-----DLIFSTHSE------------EVYPRDIYAFGLIAWTGNDVLNRR 451
L+ + E D F + + P D Y ++ +TG+D+ N++
Sbjct: 967 ALQNCGLITEIISLGDTKFMGACKLDKNSITRRLDIRLTPFDQYFCAVLYFTGSDMFNKQ 1026
Query: 452 LRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+R A G+ L++ L P GS G G L+ +E+++FD +GFP+ EP +RN
Sbjct: 1027 MRAHALDAGFTLNEYTLRPV--GSTGVPG----EPLEIHSERDIFDCIGFPYKEPQDRN 1079
>gi|327299906|ref|XP_003234646.1| DNA polymerase lambda [Trichophyton rubrum CBS 118892]
gi|326463540|gb|EGD88993.1| DNA polymerase lambda [Trichophyton rubrum CBS 118892]
Length = 651
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 141/557 (25%), Positives = 248/557 (44%), Gaps = 63/557 (11%)
Query: 14 DSNGIFAGMRVFLVEKG--VQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLA---MDLEA 68
D + G+ ++ + Q RR++I R +++ GAT K VTH++A ++ E
Sbjct: 95 DHPSVLNGLVLYFIPNDDISQARRIRISR--VLEFGATRATKFDSSVTHIVAERRLNYED 152
Query: 69 LLQ--QVSKQHL------ARFKGSVIRYQWLEDSLRLGEKVSEDLY-RIKLDPEGENIAD 119
+++ QVS + + I + + D+ ++ L ++ P GE D
Sbjct: 153 VVEYLQVSSVPVNIILVNENYPSECIMNRRILDASSPRFQIKRKLLPEPQVIPSGEPRHD 212
Query: 120 RVLSQIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESL 179
+ + ++ G S + + + HF A+ D + S+ + ++ +
Sbjct: 213 CIPTNSSRGTDSKKAGTKSTEEAVPVPPGHLPHFPAKDTADQDGMQASDPDHLDLAIRHI 272
Query: 180 TNTLSTASASPD----------FSSHHITD-PSLLYNPPDLNK------------NITEI 216
N + S D F S TD P+ + +NK ++
Sbjct: 273 KNIAALPLDSSDEEDDEIVPGEFQSGLTTDCPAWQKSFTCMNKMDGKDRADNPNSRTIDV 332
Query: 217 FGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT 276
++++ Y + R +Y +AI + + K+ S Q + GIG+ + I+EIV T
Sbjct: 333 LQQMLSYYERTADQWRCLAYRRAIAALRRERNKVVSKSQALKIKGIGERLAAKIEEIVWT 392
Query: 277 GKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGL 336
+L +LE + + +S F ++G+G A K +G+++LDDLKN +LT +Q++G+
Sbjct: 393 NRLRRLEQANMEPRDALLSQFLNIYGVGYQQASKWVAQGYKSLDDLKNRANLTTNQKIGI 452
Query: 337 KYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD- 395
+ +DD + RIPR EVE ++++A + ++ GGSYRRG A GD+D++I
Sbjct: 453 ERYDDFQKRIPREEVEAHCAIVREAVLAMDSSYTVIIGGSYRRGGADSGDIDLIITKEGV 512
Query: 396 --RKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE---------------------VYPR 432
++ H ++ V +L E +FL+ L S+ + P
Sbjct: 513 SLQEIHDQIMTVVVPQLFERRFLKTGLAVSSQIDGSKWHGASALPGNPVWRRIDLLFVPG 572
Query: 433 DIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTE 492
D LI +TGND+ NR LRLLA KG L+ GLF G+ + A L+ E
Sbjct: 573 DELGAALIYFTGNDIFNRSLRLLASKKGMCLNQRGLFSDIMRGPGRVKLNAGHLLESRDE 632
Query: 493 KEVFDFLGFPWLEPHER 509
K +F+ L PW P R
Sbjct: 633 KRIFELLAVPWRPPEHR 649
>gi|83774049|dbj|BAE64174.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 704
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 101/331 (30%), Positives = 169/331 (51%), Gaps = 28/331 (8%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 264
N + N+ ++ ++++ Y + R+ +Y K I + + P KI + Q +PG+G
Sbjct: 374 NSENPNRRTIDVLQQMLDYYARTDDHWRTLAYRKVISALRRQPKKILTKSQALAIPGVGP 433
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN 324
+ D I+EIV T +L +LE+ + + F V+G G + A + +G+R+L+DL+
Sbjct: 434 RLADKIEEIVCTNRLRRLENTNLTREDIILQEFLGVYGAGISQASRWLAQGYRSLEDLRT 493
Query: 325 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 384
+ SLT Q +G+ ++ D RIPR EVE ++++ ++ P + ++ GSYRRG A C
Sbjct: 494 KASLTPQQEIGVDHYHDFSQRIPRKEVETHGEIVKRVVQKADPGMQVIIAGSYRRGAADC 553
Query: 385 GDLDVVIMHPD---RKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE-------------E 428
GD+D++I PD + + V KL + FL+ L ++ + +
Sbjct: 554 GDIDLLITKPDATIEQIRALMIDAVVPKLFKRGFLQASLAITSRGDGSKWHGASLAPGGQ 613
Query: 429 VYPRDIYAF--------GLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
++ R F LI +TGND+ NR +RLLA KG RL+ GL+ T G Q
Sbjct: 614 IWRRIDLLFVPGSEIGAALIYFTGNDIFNRSMRLLASKKGMRLNQRGLY--TDVLRGPQR 671
Query: 481 VRARTS--LKFDTEKEVFDFLGFPWLEPHER 509
V+ T L+ E+ +F+ LG PW P R
Sbjct: 672 VKLNTGRLLEGRDERRIFEILGVPWRPPEHR 702
>gi|154281005|ref|XP_001541315.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150411494|gb|EDN06882.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 718
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 112/345 (32%), Positives = 170/345 (49%), Gaps = 30/345 (8%)
Query: 192 FSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE 251
FS H D N P N EI K+ + Y + ++ R+ +Y KAI ++ K KI
Sbjct: 375 FSCMHKHDGHTDENNP--NAQTIEILQKMSDYYDRVSDEWRALAYRKAISILRKQKEKIT 432
Query: 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 311
+ +Q +P IG+ + I+EIV T +L +LE + +S F ++G+G A K
Sbjct: 433 TKEQALAMPFIGERLAAKIEEIVWTNRLRRLEEASTEPHDVLLSQFLNIYGVGFTQASKW 492
Query: 312 YEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII 371
++G+++L+DLK LT +QR+G++++DD RIPR EVE ++++ +V P V +
Sbjct: 493 IQQGYQSLEDLKARACLTKNQRIGIEHYDDFLQRIPRAEVEAHGAIVKELLFKVDPAVKV 552
Query: 372 LCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLS----KYVKKLKEMKFLREDLIFST--- 424
+ GGSYRRG AS GD+D++I D S + + L + +L+ L
Sbjct: 553 IIGGSYRRGAASSGDIDLIITK-DGASQADICALMTDVVIPALFQQNYLQASLAVGNRGG 611
Query: 425 ----HSEEVYPRD----------IYAFG------LIAWTGNDVLNRRLRLLAESKGYRLD 464
H PR +Y G LI +TGNDV NR LRLLA KG L+
Sbjct: 612 SSKWHGACTLPRSKSPVWRRIDFLYVPGDEIGAALIYFTGNDVFNRSLRLLASKKGMCLN 671
Query: 465 DTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
GLF + + L+ EK +F+ LG PW P+ R
Sbjct: 672 QRGLFAGILRRENRMKLNRGHLLESRDEKRIFEILGVPWRPPNHR 716
>gi|317155700|ref|XP_001825307.2| DNA polymerase POL4 [Aspergillus oryzae RIB40]
Length = 693
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 101/331 (30%), Positives = 169/331 (51%), Gaps = 28/331 (8%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 264
N + N+ ++ ++++ Y + R+ +Y K I + + P KI + Q +PG+G
Sbjct: 363 NSENPNRRTIDVLQQMLDYYARTDDHWRTLAYRKVISALRRQPKKILTKSQALAIPGVGP 422
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN 324
+ D I+EIV T +L +LE+ + + F V+G G + A + +G+R+L+DL+
Sbjct: 423 RLADKIEEIVCTNRLRRLENTNLTREDIILQEFLGVYGAGISQASRWLAQGYRSLEDLRT 482
Query: 325 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 384
+ SLT Q +G+ ++ D RIPR EVE ++++ ++ P + ++ GSYRRG A C
Sbjct: 483 KASLTPQQEIGVDHYHDFSQRIPRKEVETHGEIVKRVVQKADPGMQVIIAGSYRRGAADC 542
Query: 385 GDLDVVIMHPD---RKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE-------------E 428
GD+D++I PD + + V KL + FL+ L ++ + +
Sbjct: 543 GDIDLLITKPDATIEQIRALMIDAVVPKLFKRGFLQASLAITSRGDGSKWHGASLAPGGQ 602
Query: 429 VYPRDIYAF--------GLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
++ R F LI +TGND+ NR +RLLA KG RL+ GL+ T G Q
Sbjct: 603 IWRRIDLLFVPGSEIGAALIYFTGNDIFNRSMRLLASKKGMRLNQRGLY--TDVLRGPQR 660
Query: 481 VRARTS--LKFDTEKEVFDFLGFPWLEPHER 509
V+ T L+ E+ +F+ LG PW P R
Sbjct: 661 VKLNTGRLLEGRDERRIFEILGVPWRPPEHR 691
>gi|449305237|gb|EMD01244.1| hypothetical protein BAUCODRAFT_29694 [Baudoinia compniacensis UAMH
10762]
Length = 716
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 100/325 (30%), Positives = 168/325 (51%), Gaps = 26/325 (8%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N I ++ + Y +G++ R +Y KAI + K P KI + Q LP IG+ +
Sbjct: 391 NAATINILQQMADYYGQMGDEWRIRAYRKAITTLRKHPTKIWTRKQALALPQIGERLATK 450
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EI T +L +L++ + + F ++G G A A + +G++TLD++ + L+
Sbjct: 451 IEEIAFTNRLRRLDNARDEPTDHVLQAFMGIYGAGFAKASEWVSQGYKTLDEVLAKARLS 510
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+QR+G++++ D RIPR EVEQ +++KA +++ P ++ GGSYRRG A+ GD+D
Sbjct: 511 SNQRIGIEHYADFNARIPRAEVEQHGGVVRKALQKLDPLFEVIIGGSYRRGAATSGDIDC 570
Query: 390 VIMHPDRKS---HKGFLSKYVKKLKEMKFLREDLIFSTHSEE------------------ 428
+I HP+ S L + V +L F+ L +TH ++
Sbjct: 571 IITHPNADSAYLRMIVLEQVVPELTLSGFVVAALA-ATHKDDGSKWHGASKLANSAVWRR 629
Query: 429 ----VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRAR 484
+ P D LI +TG+D+ NR +RLLA +KG RL+ GL+ G+ +
Sbjct: 630 IDLLLVPSDEIGAALIYFTGDDIFNRSIRLLASTKGMRLNQRGLYKDVMRGNGRMKISKG 689
Query: 485 TSLKFDTEKEVFDFLGFPWLEPHER 509
T L+ E+++F LG P+ P +R
Sbjct: 690 TLLEGKDERKIFQILGVPYRPPIDR 714
>gi|238498490|ref|XP_002380480.1| DNA polymerase POL4, putative [Aspergillus flavus NRRL3357]
gi|220693754|gb|EED50099.1| DNA polymerase POL4, putative [Aspergillus flavus NRRL3357]
Length = 618
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 104/344 (30%), Positives = 173/344 (50%), Gaps = 30/344 (8%)
Query: 192 FSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE 251
F+ DP N + N+ ++ ++++ Y + R+ +Y K I + + P KI
Sbjct: 277 FACVQKHDPK--SNSENPNRRTIDVLQQMLDYYARTDDHWRTLAYRKVISALRRQPKKIL 334
Query: 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 311
+ Q +PG+G + D I+EIV T +L +LE+ + + F V+G G + A +
Sbjct: 335 TKSQALAIPGVGPRLADKIEEIVCTNRLRRLENTNLTREDIILQEFLGVYGAGISQASRW 394
Query: 312 YEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII 371
+G+R+L+DL+ + SLT Q +G+ ++ D RIPR EVE ++++ ++ P + +
Sbjct: 395 LAQGYRSLEDLRTKASLTPQQEIGVDHYHDFSQRIPRKEVETHGEIVKRVVQKADPGMQV 454
Query: 372 LCGGSYRRGKASCGDLDVVIMHPD---RKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE- 427
+ GSYRRG A CGD+D++I PD + + V KL + FL+ L ++ +
Sbjct: 455 IIAGSYRRGAADCGDIDLLITKPDATIEQIRALMIDVVVPKLFKRGFLQASLAITSRGDG 514
Query: 428 ------------EVYPRDIYAF--------GLIAWTGNDVLNRRLRLLAESKGYRLDDTG 467
+++ R F LI +TGND+ NR +RLLA KG RL+ G
Sbjct: 515 SKWHGASLAPGGQIWRRIDLLFVPGSEIGAALIYFTGNDIFNRSMRLLASKKGMRLNQRG 574
Query: 468 LFPATYGSGGKQGVRARTS--LKFDTEKEVFDFLGFPWLEPHER 509
L+ T G Q V+ T L+ E+ +F+ LG PW P R
Sbjct: 575 LY--TDVLRGPQRVKLNTGRLLEGRDERRIFEILGVPWRPPEHR 616
>gi|378729050|gb|EHY55509.1| DNA polymerase IV [Exophiala dermatitidis NIH/UT8656]
Length = 763
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 102/326 (31%), Positives = 168/326 (51%), Gaps = 25/326 (7%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N E K+ Y A G+ R+ +Y +A+ + K P + + + + GIG+ + +
Sbjct: 437 NAQTIEKLLKMGEYYGATGDQWRTRAYRQAVAALRKQPQLVRTKEDALAVKGIGERIAEK 496
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
IQEIV+TG+L +L++ + D + +T+ LF ++ +G TA K +GHRTL+DL + L
Sbjct: 497 IQEIVSTGRLQRLDNAQLDSRDKTLRLFMGIYHVGYPTASKWIAEGHRTLEDLLAKVDLN 556
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+QR+G++++DD + RIPR EV Q ++QK ++ + ++ GGSYRRG CGD+D+
Sbjct: 557 RNQRIGIEHYDDFQQRIPRAEVAQHAAIVQKELQKADRGLRMIVGGSYRRGSPDCGDIDL 616
Query: 390 VIMHPD---RKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE--------------EVYPR 432
+I D ++ + + +L FL+ L + H + +V+ R
Sbjct: 617 IIFKKDADLKQIQALMMETVIPRLTARGFLKVALATTHHKDSGSKWHGASALPGSKVWRR 676
Query: 433 DIYAF--------GLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRAR 484
+ F LI +TGND NR LRLLA KG L+ GL+ G++ +
Sbjct: 677 IDFLFVPWAELGAALIYFTGNDYFNRSLRLLASRKGMLLNQHGLYANILRGRGRERMTDG 736
Query: 485 TSLKFDTEKEVFDFLGFPWLEPHERN 510
L+ EK +F LG + P RN
Sbjct: 737 KLLEGHDEKRIFKILGVTYRPPEHRN 762
>gi|169607575|ref|XP_001797207.1| hypothetical protein SNOG_06846 [Phaeosphaeria nodorum SN15]
gi|160701441|gb|EAT85497.2| hypothetical protein SNOG_06846 [Phaeosphaeria nodorum SN15]
Length = 766
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 109/348 (31%), Positives = 170/348 (48%), Gaps = 31/348 (8%)
Query: 191 DFSSHHITDP-SLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFK 249
+ ++ DP S Y+ + N +I ++ Y + + R+ +Y K I ++K K
Sbjct: 419 NLNTFQCMDPGSNGYSSDNPNARTIQILDEMCKHYDKMQDQWRTIAYRKGITTLKKQTTK 478
Query: 250 IESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQ 309
I ++ Q LP IG+ + D I+EIV T +L KL+ + D + LF V+G G A
Sbjct: 479 IVTSKQAAALPFIGQRLADKIEEIVLTDRLRKLDSTKDDPLDSVLRLFLGVYGAGLVQAN 538
Query: 310 KLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEV 369
K + G+RTL+DL+ + LT S R+GL++++D TRIPR EVE ++ A ++ PE
Sbjct: 539 KWIQAGYRTLEDLETKAKLTDSHRVGLEHYNDFNTRIPRSEVEAHGAAVKAALAQIDPEF 598
Query: 370 IILCGGSYRRGKASCGDLDVVIMHPDRK---SHKGFLSKYVKKLKEMKFLREDLIFSTHS 426
GSYRRG GD+D++I P V +L FL+ L S +
Sbjct: 599 SATIMGSYRRGANDSGDIDMLITCPGASLSMLRTVVFDSLVPQLFSAGFLKASLATSRSN 658
Query: 427 EE-----------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRL 463
+ + P + LI +TGND+ NR +RLLA K RL
Sbjct: 659 DPTGTKWHGASCLQTSKVWRRMDLLLVPEEEMGAALIYFTGNDIFNRSIRLLARKKNMRL 718
Query: 464 DDTGLFPATYGSGGKQGVRARTSLKFD--TEKEVFDFLGFPWLEPHER 509
+ GL+ G++G + + + +EK++F+ LG PW EPHER
Sbjct: 719 NQKGLYKDV--ERGRRGEKLNEGVLVEGRSEKKIFEVLGVPWREPHER 764
>gi|451848460|gb|EMD61766.1| hypothetical protein COCSADRAFT_192625 [Cochliobolus sativus
ND90Pr]
Length = 780
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 113/374 (30%), Positives = 176/374 (47%), Gaps = 40/374 (10%)
Query: 173 PMSSESLT--NTLSTASASPD-----FSSHHITDPS----LLYNPPDLNKNITEIFGKLI 221
PM ++ L + LS ASA D +S DPS + +NP N +I ++
Sbjct: 408 PMGTDYLKRLSVLSKASALRDKKSFGMNSFQCMDPSASSNVSWNP---NARTIQILEEMC 464
Query: 222 NIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSK 281
Y + + R+ SY K + ++K KI +A+Q LP IG + I+EIV T +L +
Sbjct: 465 KYYDRMQDQWRTLSYRKCVATLKKQTVKITTAEQAAKLPSIGTHLAAKIEEIVLTDRLRR 524
Query: 282 LEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDD 341
LE + + + LF ++G+G A K + GHRTL+DLK + +L+ +Q++GL+ + D
Sbjct: 525 LESTCHNPQDVALRLFLGIYGVGLVCANKWIQAGHRTLEDLKTKATLSENQKIGLENYHD 584
Query: 342 IKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKS--- 398
+RIPR EVE ++ A +E+ PE GSYRRG GD+D+++ P+
Sbjct: 585 FNSRIPRAEVEAHGVIVAAALKEIDPEFSATIMGSYRRGAQDSGDIDIILSRPNMSPTAM 644
Query: 399 -------------HKGFL----------SKYVKKLKEMKFLREDLIFSTHSEEVYPRDIY 435
GFL K L I+ + P
Sbjct: 645 STTIFEVLIPHLYKTGFLKASLRSSRYSDSSSSKWHGASCLPSSTIWRRIDFLIVPEQEM 704
Query: 436 AFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEV 495
L+ +TG+DV NR +RLLA KG +L+ GL+ + + ++ +EK +
Sbjct: 705 GAALLYFTGDDVFNRSMRLLARKKGMKLNQRGLYMDVLIGRKGEKLNHGVLIEGKSEKRI 764
Query: 496 FDFLGFPWLEPHER 509
F+ LG PW EP ER
Sbjct: 765 FEILGVPWREPGER 778
>gi|315053014|ref|XP_003175881.1| DNA polymerase lambda [Arthroderma gypseum CBS 118893]
gi|311341196|gb|EFR00399.1| DNA polymerase lambda [Arthroderma gypseum CBS 118893]
Length = 653
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 100/324 (30%), Positives = 162/324 (50%), Gaps = 24/324 (7%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N E+ ++++ Y + R +Y +AI + + ++ + Q + GIG+ +
Sbjct: 328 NFRTIEVLQQMLSYYERTADQWRCLAYRRAIAALRRENERVMTKSQALKIRGIGERLAAK 387
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EIV T +L +LE + K +S F ++G+G A K +G+++LDDLKN LT
Sbjct: 388 IEEIVWTNRLRRLEQANMEPKDVLLSQFLNIYGVGYQQASKWIAQGYKSLDDLKNRAHLT 447
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+QR+G++ +DD + RIPR EVE ++++A + ++ GGSYRRG A GD+D+
Sbjct: 448 TNQRIGIERYDDFRKRIPREEVETHGAIVREAVLTMDKSYTVIIGGSYRRGAADSGDIDL 507
Query: 390 VIMH---PDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE------------------ 428
++ P ++ H ++ V +L E FL+ L S+ ++
Sbjct: 508 ILTKEGAPLQEIHDQIMTTIVPQLFERGFLKTGLAVSSKADGSKWHGASALPGNPVWRRI 567
Query: 429 ---VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRART 485
P D LI +TGND+ NR LRLLA KG L+ GLF G+ + A
Sbjct: 568 DLLFVPGDELGAALIYFTGNDIFNRSLRLLASKKGMCLNQRGLFSDIMRGPGRVKLNAGH 627
Query: 486 SLKFDTEKEVFDFLGFPWLEPHER 509
L+ EK +F+ L PW P R
Sbjct: 628 LLESRDEKRIFELLAVPWRPPEHR 651
>gi|346471971|gb|AEO35830.1| hypothetical protein [Amblyomma maculatum]
Length = 335
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 108/325 (33%), Positives = 171/325 (52%), Gaps = 41/325 (12%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
D KNIT NIY+ S +Y KA +EKL ++ SA++ K LPGIG +
Sbjct: 25 DYEKNITR------NIYK-------SNAYRKAAVTLEKLDKRVTSAEEAKALPGIGAKIS 71
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NED 326
I E + TGK+SKLE DE + V GIGPA A+ LY++G R++D+L+ N+D
Sbjct: 72 QKIGEFLRTGKVSKLEKVRSDESASAVQELTRVSGIGPAHAKSLYDRGIRSIDELRQNQD 131
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
+LT Q++GL+Y +D + RIPR EV +E + + + + GSYRRG + GD
Sbjct: 132 ALTQHQKIGLRYLEDFEKRIPREEVSLLEARIVGELNKFDEDYQAVACGSYRRGLPTSGD 191
Query: 387 LDVVIMHPDRKSHK----GFLSKYVKKLKEMKFLRE-----DLIFSTHSE---------- 427
+DV++ H + +S L++ V++L++ + + + F+ +
Sbjct: 192 IDVLVCHKNYRSTDKRPPKLLARLVEQLRQAGLVTDIMSLGETKFAGVCQLDASRPHRRI 251
Query: 428 --EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRART 485
V P+D + GL+ +TG+D+ N+ +R A + L + L P G G G
Sbjct: 252 DIRVLPQDQFFCGLLYFTGSDLFNQSMRAHAIQQNMTLSEYALRP--IGCTGVPG----E 305
Query: 486 SLKFDTEKEVFDFLGFPWLEPHERN 510
L +E++VFD+LG P+ EP +RN
Sbjct: 306 PLPISSERDVFDWLGLPYWEPDKRN 330
>gi|389631907|ref|XP_003713606.1| hypothetical protein MGG_04577 [Magnaporthe oryzae 70-15]
gi|351645939|gb|EHA53799.1| hypothetical protein MGG_04577 [Magnaporthe oryzae 70-15]
gi|440467878|gb|ELQ37072.1| DNA polymerase lambda [Magnaporthe oryzae Y34]
gi|440478624|gb|ELQ59443.1| DNA polymerase lambda [Magnaporthe oryzae P131]
Length = 868
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 103/346 (29%), Positives = 169/346 (48%), Gaps = 46/346 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N EI ++ + Y + + R+ +Y + I + + KI + ++ LP +G +
Sbjct: 521 NARTIEILQQMCDYYSQINDHWRTTAYRRVINTLRRQKHKITTEEEAVRLPSVGSRLAKK 580
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-EDSL 328
I+EI T +L +LEH + R + L+ ++G+G A++ +G RTLDDLK E +L
Sbjct: 581 IEEIAATDRLQRLEHALNEPLDRVLQLYLGIYGVGLTQARRWISRGFRTLDDLKRPEANL 640
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
+QR+GL++++D+ TRIPR EVE + L+Q+ ++ +V +L GGSYRRG +S GD+D
Sbjct: 641 NKNQRMGLEHYEDLNTRIPRSEVEALGSLVQREAAKIDDQVELLVGGSYRRGASSSGDVD 700
Query: 389 VVIMHPDRKSHK---GFLSKYVKKLKEMKFL------------------------REDLI 421
++ S FL + V++L E + E++
Sbjct: 701 FIVTRKGTVSTDELVPFLDRLVERLTETGVVVATVAALHVNKLGASKWHGCCVLPPEEMP 760
Query: 422 FSTHSEE------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRL 463
T + + P Y LI +TGND+ NR +RLLA KG RL
Sbjct: 761 LQTGDGDGGREKQNYKPVWRRVDFLLVPETEYGAALIYFTGNDLFNRSIRLLASKKGMRL 820
Query: 464 DDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ GL+ S G++ V ++ E+ +F+ LG W EP ER
Sbjct: 821 NQRGLYLDVMRSRGREKVTDGQLIEGSDERRIFEILGVKWREPWER 866
>gi|281212126|gb|EFA86286.1| hypothetical protein PPL_00073 [Polysphondylium pallidum PN500]
Length = 617
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 100/329 (30%), Positives = 171/329 (51%), Gaps = 28/329 (8%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
+ N+++T + KL A G++ R ++Y +AI ++ L FK+ S QV + GIG +
Sbjct: 292 NYNEHLTSVLVKLQTKAEADGDNWRQYAYKRAIGILRNLTFKVTSDKQVGHIKGIGSKIS 351
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK---N 324
D I+EI+ TG L K+E + D ++ G GP T ++ KG ++ L+ N
Sbjct: 352 DKIKEILLTGTLKKVEMVQSDAHTIASEQLSKIHGTGPETVKRWLAKGINSIQKLQVIAN 411
Query: 325 EDS--LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA 382
D LT+ Q++GLKY++D + RIPR EV+ + ++Q E+ ++I+ GS+RR K+
Sbjct: 412 NDPSFLTNQQQIGLKYYNDFQHRIPREEVQDIANIVQLVANEIDQKIIMQVCGSFRRNKS 471
Query: 383 SCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLI-FSTHSE-------------- 427
+CGD+D++ H + GFL + V+KL + K L + L +T+S+
Sbjct: 472 TCGDIDILFTHSKGELLTGFLGRLVQKLVDCKLLTDHLTNLNTNSDKYMGVCRLDENSRH 531
Query: 428 -----EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVR 482
+ R+ + F L+ +TG+D NR +RL A G+ L ++ L G Q
Sbjct: 532 RRIDFQSIVREEWPFALLYFTGSDHFNRSMRLWARKNGFSLSESHLVRRW---GTAQDEI 588
Query: 483 ARTSLKFDTEKEVFDFLGFPWLEPHERNL 511
+ E+++F LG + EPH+R +
Sbjct: 589 KGEPIPAANERDIFQLLGLEYKEPHQREI 617
>gi|261194855|ref|XP_002623832.1| DNA polymerase POL4 [Ajellomyces dermatitidis SLH14081]
gi|239588370|gb|EEQ71013.1| DNA polymerase POL4 [Ajellomyces dermatitidis SLH14081]
Length = 685
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 109/345 (31%), Positives = 167/345 (48%), Gaps = 30/345 (8%)
Query: 192 FSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE 251
FS H D + P N EI K+ Y + + R+ +Y KAI + K +I
Sbjct: 342 FSCMHKHDGHTDRDNP--NARTIEILQKMSEYYDRISDQWRTLAYRKAISALRKQKERIV 399
Query: 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 311
+ +Q +PGIG+ + I+EIV T +L +LE + +S F ++G+G A A K
Sbjct: 400 TREQAVTIPGIGERLAAKIEEIVWTNRLRRLEEANAEPHDVLLSQFLNIYGVGFAQASKW 459
Query: 312 YEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII 371
++G+++LDDLK + SLT +Q++G++++DD RIPR EVE +++K V P V +
Sbjct: 460 IQQGYQSLDDLKAKASLTKNQKIGIEHYDDFCQRIPRAEVEAHGAIVKKLLFTVDPAVQV 519
Query: 372 LCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY----VKKLKEMKFLREDLIFSTHSE 427
+ GGSYRRG AS GD+D++I D + + + L + FL+ L E
Sbjct: 520 IIGGSYRRGAASSGDIDLIITK-DGATQAEICALMTDIVIPALFQQNFLQASLAVGRRGE 578
Query: 428 E-----------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLD 464
P D LI +TGN + NR LRLLA KG L+
Sbjct: 579 SSKWHGACALPGSKNPVWRRIDFLYVPGDEIGAALIYFTGNGIFNRSLRLLASKKGMCLN 638
Query: 465 DTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
GLF + + + ++ EK +F+ LG PW P+ R
Sbjct: 639 QRGLFTGIIRRENRVKLNSGRLIESRDEKRIFEILGVPWRPPNHR 683
>gi|20067709|emb|CAD29096.1| chimeric DNA-directed DNA polymerase bf2-8 [synthetic construct]
Length = 335
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 110/330 (33%), Positives = 183/330 (55%), Gaps = 34/330 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQ----KAGEEVLPEVI------ILCGGS 376
L H QR+GLKYF+D + RIPR E+ Q ++++ + E ++I I+ GS
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREELIQGKKIVNHLRSRLAFEYNGQLIKILSKNIVAVGS 190
Query: 377 YRRGKASCGDLDVVIMHPDRKSHKGFL---SKYVKKLK---EMKFLREDLIFSTHSEEVY 430
RR + D+D++I+ P++K K L +++ + E KF+ + S + E Y
Sbjct: 191 LRREEKMLNDVDLLIIVPEKKLLKHVLPNIRRFITDTRSKGETKFMGVCQLPSENDENEY 250
Query: 431 ----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P G G
Sbjct: 251 PHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTG 305
Query: 481 VRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
V A L D+E+++FD++ + + EP +R+
Sbjct: 306 V-AGEPLPVDSEQDIFDYIQWRYREPKDRS 334
>gi|380025572|ref|XP_003696544.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase beta-like [Apis
florea]
Length = 337
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 112/335 (33%), Positives = 177/335 (52%), Gaps = 36/335 (10%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIG 263
N + N+++ + +L N R + ++ + +Y KA + L +I+S + K LPGIG
Sbjct: 9 NTGNPNQDLCDFLIELANYERNVSKNIYKYNAYRKAAGTLSGLTERIKSGQEAKKLPGIG 68
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 323
+ + I E ++TGKL KLE KDE I+L V GIGPA A++L G +TLDDLK
Sbjct: 69 EKIAKKIDEFLSTGKLQKLEDINKDENNIAINLLTRVSGIGPAKAKELVTAGIKTLDDLK 128
Query: 324 -NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA 382
+E+ L H Q++GLKYF+D + RIPR E+EQ+E++++ ++ E II+ GSYRR K
Sbjct: 129 KHEEKLNHHQKIGLKYFEDFEKRIPRKEIEQIEKIMKDIIADLSEEYIIIICGSYRREKE 188
Query: 383 SCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFL--REDLIFST---------------- 424
GD+DV++ +P S + L K LK + + ++ LI T
Sbjct: 189 DSGDIDVLLTYPAYTSKEQKLKKENSILKNVINVLEKKKLIVDTISLGPTKFMGVCKVPG 248
Query: 425 ----HSEEV----YPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATY-GS 475
H + P D Y ++ +TG+D+ N+ +R A K Y L++ L T G+
Sbjct: 249 KNKNHXRRLDIRFIPYDQYYCAVLYFTGSDLFNKSMRAHALEKNYTLNEYTLKRLTSEGT 308
Query: 476 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
GK + K E+++F L P+ +P +RN
Sbjct: 309 PGK-------AEKITCEEDIFRILELPYKKPKDRN 336
>gi|260619563|gb|ACX47468.1| DNA polymerase beta [Pongo pygmaeus]
Length = 296
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 103/286 (36%), Positives = 157/286 (54%), Gaps = 33/286 (11%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
+Y KA VI K P KI+S + K LPG+G + + I E + TGKL KLE +D+ +I
Sbjct: 17 AYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSI 76
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQ 353
+ V GIGP+ A+K ++G +TL+DL KNED L H QR+GLKYF D + RIPR E+ Q
Sbjct: 77 NFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQ 136
Query: 354 MERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKG----FLSKYVKK 409
M+ ++ ++V E I GS+RRG S GD+DV++ HP S L + V++
Sbjct: 137 MQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQ 196
Query: 410 LKEMKFLREDL------------IFSTHSEE----------VYPRDIYAFGLIAWTGNDV 447
L ++ F+ + L + S + E+ + P+D Y G++ +TG+D+
Sbjct: 197 LPKVHFITDTLSKGETKFMGVCQLPSKNDEKECPHRRIDIRLIPKDQYYCGVLYFTGSDI 256
Query: 448 LNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEK 493
N+ +R A KG+ +++ + P G GV A L D+EK
Sbjct: 257 FNKNMRAHALEKGFTINEYTIRPL-----GVTGV-AGEPLPVDSEK 296
>gi|240279395|gb|EER42900.1| polymerase [Ajellomyces capsulatus H143]
gi|325089661|gb|EGC42971.1| polymerase [Ajellomyces capsulatus H88]
Length = 717
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 109/345 (31%), Positives = 166/345 (48%), Gaps = 30/345 (8%)
Query: 192 FSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE 251
FS H D N P N EI K+ + Y + ++ R+ +Y KAI ++ K KI
Sbjct: 374 FSCMHKHDGHTDENNP--NAQTIEILQKMSDYYDRVSDEWRALAYRKAISILRKQKEKIV 431
Query: 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 311
+ +Q +P IG+ + I+EIV T +L +LE + +S F ++G+G A K
Sbjct: 432 TKEQALAMPFIGERLAAKIEEIVWTNRLRRLEEASTEPHDVLLSQFLNIYGVGFTQASKW 491
Query: 312 YEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII 371
++G+++L+DL LT +QR+G++++DD RIPR EVE ++++ +V P V +
Sbjct: 492 IQQGYQSLEDLNARACLTKNQRIGIEHYDDFLQRIPRAEVEAHGAIVKELLFKVDPAVKV 551
Query: 372 LCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLS----KYVKKLKEMKFLREDLIFSTHSE 427
+ GGSYRRG AS GD+D++I D S + + L + +L+ L E
Sbjct: 552 IIGGSYRRGAASSGDIDLIITK-DGASQSDICALMTDVVIPALFQQNYLQASLAVGNRGE 610
Query: 428 E-----------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLD 464
P D LI +TGNDV NR LRLLA KG L+
Sbjct: 611 SSKWHGTCALPRSKSPVWRRIDFLYVPGDEIGAALIYFTGNDVFNRSLRLLASKKGMCLN 670
Query: 465 DTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
GLF + + L+ EK +F+ LG PW P+ R
Sbjct: 671 QRGLFAGILRRENRVKLNRGHLLESRDEKRIFEILGVPWRPPNHR 715
>gi|426359503|ref|XP_004047012.1| PREDICTED: DNA polymerase beta [Gorilla gorilla gorilla]
Length = 353
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 109/338 (32%), Positives = 171/338 (50%), Gaps = 68/338 (20%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
+Y KA VI K P KI+S + K LPG+G + + I E + TGKL KLE +D+ +I
Sbjct: 21 AYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSI 80
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLD---------------------------------- 320
+ V GIGP+ A+K ++G +TL+
Sbjct: 81 NFLTRVSGIGPSAARKFVDEGIKTLEGSQLDSCPVKGHLNGTESLLDLIWDVMTILKLKN 140
Query: 321 -DL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYR 378
DL KNED L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+R
Sbjct: 141 ADLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFR 200
Query: 379 RGKASCGDLDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL------------IF 422
RG S GD+DV++ HP S L + V++L+++ F+ + L +
Sbjct: 201 RGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLP 260
Query: 423 STHSEEVY----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPAT 472
S + E+ Y P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P
Sbjct: 261 SKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL- 319
Query: 473 YGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
G GV A L D+EK++FD++ + + EP +R+
Sbjct: 320 ----GVTGV-AGEPLPVDSEKDIFDYIQWKYREPKDRS 352
>gi|20067683|emb|CAD29083.1| chimeric DNA-directed DNA polymerase bf4-8 [synthetic construct]
gi|20067685|emb|CAD29084.1| chimeric DNA-directed DNA polymerase bf4-10 [synthetic construct]
Length = 322
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 111/319 (34%), Positives = 181/319 (56%), Gaps = 25/319 (7%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI-ILCG-GSYRRGKASC 384
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ PE I +CG GS RR +
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSGSLRREEKML 190
Query: 385 GDLDVVIMHPDRKSHKGFLSKYVKKL---KEMKFLREDLIFSTHSEEVYP------RDIY 435
D+D++I+ P++K K L +++ E KF+ + S + E YP R I
Sbjct: 191 NDVDLLIIVPEKKLLKHVLPRFITDTLSKGETKFMGVCQLPSENDENEYPHRRIDIRLIP 250
Query: 436 A----FGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDT 491
A + + +TG ++ +R+ A KG+ +++ + P G GV A L D+
Sbjct: 251 AEEKPYAIFHFTGP--VSYLIRIRAALKGFTINEYTIRPL-----GVTGV-AGEPLPVDS 302
Query: 492 EKEVFDFLGFPWLEPHERN 510
E+++FD++ + + EP +R+
Sbjct: 303 EQDIFDYIQWRYREPKDRS 321
>gi|259488449|tpe|CBF87890.1| TPA: DNA polymerase POL4, putative (AFU_orthologue; AFUA_1G10480)
[Aspergillus nidulans FGSC A4]
Length = 642
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 110/384 (28%), Positives = 181/384 (47%), Gaps = 30/384 (7%)
Query: 155 AESKGDVETNALSEAPNSPMSSESLT---NTLSTASASPDFSSHHITDPSLLYNPPDLNK 211
A K ET+ S++P + S L+ N ++ S NP N
Sbjct: 262 AAEKSGYETSDESQSPPAKTKSRKLSDGQNGVARCWQQKFVCMQKHDSTSSAQNP---NA 318
Query: 212 NITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQ 271
E+ ++++ Y + R+ +Y KAI + K+ S + +PGIG+ + D I+
Sbjct: 319 RTIEVLQQMLDYYTRTADHWRTLAYRKAISALRSQSKKVLSRSEAIRIPGIGERLADKIE 378
Query: 272 EIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHS 331
EIV T +L +L++ + R + + V+G G A + +G+R+L+DL+ + SLT +
Sbjct: 379 EIVLTNRLRRLDNTSNTVEDRLLQTYLGVYGAGITVASRWIAQGYRSLEDLRTKASLTQA 438
Query: 332 QRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVI 391
QR+GL ++ D +IPR EV+ +++ P++ ++ GGSYRRG A+ GD+D++I
Sbjct: 439 QRIGLDHYFDFSQQIPRTEVQAHGNFVRRVVRMESPDMQVIIGGSYRRGAATSGDIDLII 498
Query: 392 MHPD---RKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE-------------EVYPRDIY 435
PD + L V KL + FL+ L + E +++ R
Sbjct: 499 TRPDATIEEIRTLMLDNVVPKLFQQGFLQASLAATCRGEGSKWHGASKLPDGQLWRRIDL 558
Query: 436 AF--------GLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSL 487
F LI +TGND+ NR +RLLA K RL+ GL+ + + V L
Sbjct: 559 LFVPGAELGAALIYFTGNDIFNRSIRLLASKKLMRLNQRGLYADVPRASQRTKVNPGRLL 618
Query: 488 KFDTEKEVFDFLGFPWLEPHERNL 511
+ E+ +F LG PW P RN
Sbjct: 619 ESRDERRIFKILGVPWRPPEHRNC 642
>gi|340371419|ref|XP_003384243.1| PREDICTED: DNA polymerase beta-like [Amphimedon queenslandica]
Length = 338
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 105/332 (31%), Positives = 173/332 (52%), Gaps = 36/332 (10%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYK-AIPVIEKLPFKIESADQVKGLPGIGKSMQD 268
N +I EI +L R + + + YK A V+ K P +I+S + + L G+G +
Sbjct: 13 NSDIAEILMELATYERNVARNIHKHNVYKKAANVLAKHPERIKSGAEARKLDGVGDKIAK 72
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DS 327
I EI++TG+L KLE D+ + I+ +V GIGPA A+KL ++G TL+DLKN D
Sbjct: 73 KIDEILSTGQLQKLEKIRADDSSQAINFLTQVTGIGPAAAKKLVDEGITTLEDLKNNMDK 132
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 387
L H Q++G+K+F + RIPR E+ Q++ + + EV I GS+RRG S GD+
Sbjct: 133 LNHHQQIGVKHFHEFNERIPRPEMLQLQEIAFRLIAEVDKAFIPTVCGSFRRGALSSGDI 192
Query: 388 DVVIMHP----DRKSHKGFLSKYVKKLKEMKFLREDLI-------------FSTHSEE-- 428
D+++ HP D KS F+ + V K++ F+ + L S + +E
Sbjct: 193 DILLCHPGHTSDSKSKPKFIKEIVNKMETGGFVTDTLSIGETKFMGVCRLPISDNKDEKP 252
Query: 429 ---------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQ 479
+ P D Y FG + +TG+D+ N+ +R A KG+ L++ + P G+ G
Sbjct: 253 PLHRRIDIRLIPHDQYYFGTLYFTGSDMFNKNMRTHALEKGFTLNEYSIRPV--GATGIP 310
Query: 480 GVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 511
G + E+++F + +P+ +P ER++
Sbjct: 311 G----EPVPVTCEEDIFTMIDYPYKKPEERSV 338
>gi|225713628|gb|ACO12660.1| DNA polymerase beta [Lepeophtheirus salmonis]
Length = 340
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 106/332 (31%), Positives = 177/332 (53%), Gaps = 34/332 (10%)
Query: 208 DLNKNITEIFGKLINIYRAL-GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSM 266
+LN + E+ +L + + G +S +Y KA V+ K +I S D+ + L GIG +
Sbjct: 15 NLNADFCELLNELATFEQNVNGNKFKSNAYRKAANVLSKHSTRITSGDEARKLDGIGAKI 74
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE-KGHRTLDDLKN- 324
I E + TG L KL++ D+K I+L V GIGP A++L E +G RT++DL+
Sbjct: 75 ALKIDEFIETGNLRKLDNIRTDDKANAINLLTRVIGIGPVKARELVENEGIRTVEDLRKI 134
Query: 325 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 384
E LTH+Q++GL++FDD + RIPR+EV+ + LL++ E+ + GSYRRG +
Sbjct: 135 EGKLTHAQKVGLRHFDDFEERIPRNEVDSLHLLLREHIGELDKTYTMTICGSYRRGLPTS 194
Query: 385 GDLDVVIMHP--------DRKSHKGFLSKYVKKLKEMKFLREDL---------IFSTHSE 427
GD+DV++ H D + L+K V L++ KF+ + L + S+
Sbjct: 195 GDVDVLLTHDSFTSSSTNDSQKKGHHLAKVVSSLQKAKFITDTLSHGPTKFMGVCRLTSD 254
Query: 428 EVY--------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQ 479
Y P+D Y G++ +TG+D+ N+++R A KG+ L++ L P +
Sbjct: 255 SKYRRLDILLLPKDQYYCGVLYFTGSDMFNKKMRAHALEKGFTLNEHSLRPI------DE 308
Query: 480 GVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 511
L +E+++FD++ F + +P ER+L
Sbjct: 309 AQLPLDPLPVSSEEDIFDYISFDYKDPEERSL 340
>gi|225559652|gb|EEH07934.1| DNA polymerase lambda [Ajellomyces capsulatus G186AR]
Length = 628
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 109/345 (31%), Positives = 167/345 (48%), Gaps = 30/345 (8%)
Query: 192 FSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE 251
FS H D N P N EI K+ + Y + ++ R+ +Y KAI ++ K KI
Sbjct: 285 FSCMHKHDGHTDENNP--NAQTIEILQKMSDYYDRVSDEWRALAYRKAISILRKQKEKIV 342
Query: 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 311
+ +Q +P IG+ + I+EIV T +L +LE + +S F ++G+G A K
Sbjct: 343 TKEQALAMPFIGERLAAKIEEIVWTNRLRRLEEASTEPHDVLLSQFLNIYGVGFTQASKW 402
Query: 312 YEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII 371
++G+++L+DLK LT +QR+G++++DD RIPR EVE ++++ +V P V +
Sbjct: 403 IQQGYQSLEDLKARACLTKNQRIGIEHYDDFLQRIPRAEVEAHGAIVKELLFKVDPAVKV 462
Query: 372 LCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLS----KYVKKLKEMKFLREDLIFSTHSE 427
+ GGSYRRG AS GD+D++I D S + + L + +L+ L E
Sbjct: 463 IIGGSYRRGAASSGDIDLIITK-DGASQADICALMTDVVIPALFQQNYLQASLAVGNRGE 521
Query: 428 E-----------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLD 464
P D LI +TGN+V NR LRLLA KG L+
Sbjct: 522 SSKWHGTCALPRSKSPVWRRIDFLYVPGDEIGAALIYFTGNEVFNRSLRLLASKKGMCLN 581
Query: 465 DTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
GLF + + L+ EK +F+ LG PW P+ R
Sbjct: 582 QRGLFAGILRRENRVKLNRGHLLESRDEKRIFEILGVPWRPPNHR 626
>gi|302496957|ref|XP_003010479.1| DNA polymerase POL4, putative [Arthroderma benhamiae CBS 112371]
gi|291174022|gb|EFE29839.1| DNA polymerase POL4, putative [Arthroderma benhamiae CBS 112371]
Length = 671
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 99/324 (30%), Positives = 161/324 (49%), Gaps = 24/324 (7%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N E+ ++++ Y + R +Y +AI + + K+ S Q + GIG+ +
Sbjct: 346 NSRTIEVLQQMLSYYERTADQWRCLAYRRAIAALRRERNKVVSKSQALEIKGIGERLAAK 405
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EIV T +L +LE + +S F ++G+G A K +G+++LDDLKN +LT
Sbjct: 406 IEEIVWTNRLRRLEQANMEPSDALLSQFLNIYGVGYQQASKWVAQGYKSLDDLKNRANLT 465
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+Q++G++ +DD + RIPR EV+ ++++A + ++ GGSYRRG A GD+D+
Sbjct: 466 TNQKIGIERYDDFQKRIPREEVKAHGAIVREAVVAMDSSYTVIIGGSYRRGAADSGDIDL 525
Query: 390 VIMHPD---RKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE------------------ 428
+I ++ H ++ V +L E FL+ L S+ ++
Sbjct: 526 IITKEGASLQEIHDQIMTIVVPQLFERGFLKTGLAVSSRADGSKWHGASALPGNPVWRRI 585
Query: 429 ---VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRART 485
P D LI +TGND+ NR LRLLA KG L+ GLF G+ + A
Sbjct: 586 DLLFVPGDELGAALIYFTGNDIFNRSLRLLASKKGMCLNQRGLFADIMRGPGRVKLNAGH 645
Query: 486 SLKFDTEKEVFDFLGFPWLEPHER 509
L+ EK +F+ L PW P R
Sbjct: 646 LLESRDEKRIFELLAVPWRPPEHR 669
>gi|402077951|gb|EJT73300.1| hypothetical protein GGTG_10145 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 868
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/340 (30%), Positives = 164/340 (48%), Gaps = 40/340 (11%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP-FKIESADQVKGLPGIGKSMQD 268
N E+ + + Y + R+ +Y +AI + + ++ + + LPG+G +
Sbjct: 527 NARTIEMLQSMCDFYERTNDHWRTTAYRRAIGTLRRTTDRRVATEEDAARLPGVGPRLAS 586
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL 328
I+EI TT +L +LEH + + F V+G G A A++ +G RTLDDL SL
Sbjct: 587 KIEEIATTDRLRRLEHARAEPLDAVLQTFLGVYGAGLAQARRWIAQGFRTLDDLAARASL 646
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
T +QR+G++ D+ +RIPR EVE +++++++A V P V ++ GGSYRRG +CGD+D
Sbjct: 647 TPAQRMGVERHADLNSRIPRDEVEALDKVVRRAAAAVDPAVRLILGGSYRRGADTCGDVD 706
Query: 389 VVIMHPDRKSHKG---FLSKYVKKLKE-------MKFLREDLIFST--HSEEVYPRDIY- 435
++ + FL + + +L + + LR D + H V PRD +
Sbjct: 707 FIVTRDGAAAADDLVPFLDELIARLTDAGVVVATVAALRTDRPGGSKWHGCCVLPRDHHP 766
Query: 436 --------------------------AFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLF 469
LI +TGNDV NR +RLLA KG RL+ GL+
Sbjct: 767 RAPPAGDSRAPVWRRVDFLLVPEAEMGAALIYFTGNDVFNRSMRLLASKKGMRLNQRGLY 826
Query: 470 PATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ V ++ E+ +F+ LG W EPHER
Sbjct: 827 RDVMRGPNRVKVTTGELVEGRDERRIFEILGVKWREPHER 866
>gi|374258480|gb|AEZ01786.1| DNA polymerase beta, partial [Larus glaucescens]
Length = 315
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 98/289 (33%), Positives = 156/289 (53%), Gaps = 28/289 (9%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 268
N+ IT+ +L N R + + +Y KA VI + P KI S + K L G+G + +
Sbjct: 12 NEGITDFLTELANYERNVNRAVHKYNAYRKAASVISRYPSKIRSGAEAKKLDGVGAKIAE 71
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDS 327
I E ++TGKL LE +D+ +I+L V G+GPA A+K E+G +TL+DL KNE
Sbjct: 72 KIDEFLSTGKLRXLEKIRQDDTSASINLLTRVTGVGPAAARKFVEEGIKTLEDLRKNEHK 131
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 387
LTH QR+GLKYF+D + RIPR E+ QM+ ++ + +++ P I GS+RRG S GD+
Sbjct: 132 LTHHQRIGLKYFEDFEKRIPREEMLQMQEIVLEEVKKLDPNYIATVCGSFRRGAESSGDM 191
Query: 388 DVVIMHPDRKSHKG----FLSKYVKKLKEMKFL-------------------REDLIFST 424
DV++ HP S L + V++L+++ F+ +ED
Sbjct: 192 DVLLTHPSFTSESSKQSKLLRQVVEQLEKVHFVTDVLSKGDTKFMGVCQLPNKEDGTAYP 251
Query: 425 HSE---EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 470
H + P+D Y G++ +TG+D+ N+ +R A G +++ + P
Sbjct: 252 HRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALGMGLTINEYTIRP 300
>gi|145506893|ref|XP_001439407.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124406591|emb|CAK72010.1| unnamed protein product [Paramecium tetraurelia]
Length = 616
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 109/329 (33%), Positives = 171/329 (51%), Gaps = 29/329 (8%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N I E KL+ IY + R +Y KAI ++ LP+ I+S++ +K +P IG ++
Sbjct: 290 NNEIIEELEKLLKIYTNEKDKGRCIAYRKAIGFLKALPYPIKSSEDLKDMPTIGDKIKKK 349
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSL 328
I EI+ TGKL+K++ E EK IS VWGIGP TA Y KG +TL+DL KN L
Sbjct: 350 IIEIMQTGKLTKVQKLEGQEKNVAISELTRVWGIGPTTAATFYFKGIKTLEDLKKNLHLL 409
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEE---VLPEVIILCGGSYRRGKASCG 385
+Q++GL+ D++ RIPR E + ++++ ++ V GSYRR K +CG
Sbjct: 410 NRNQQVGLQLVKDLEQRIPREEATLIFEIVKREIDDLSGVQGLFKATACGSYRREKETCG 469
Query: 386 DLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE------------------ 427
D+D++I D K+ + FL + +L E K L L +E
Sbjct: 470 DMDILITRCDGKNTEDFLLNLITRL-EGKLLTHHLTMPKRTEHDCETYMGIGRVSNQAVH 528
Query: 428 -----EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVR 482
++YP++ Y ++ +TG+D NR +RL A+ GY L D GL+P G+ K+ +
Sbjct: 529 RRIDLKLYPKEQYGCAVLYFTGSDHYNRSMRLWAQKNGYTLSDHGLYPTQRGAHNKKLWK 588
Query: 483 ARTSLKFDTEKEVFDFLGFPWLEPHERNL 511
+ + E +V+ LG + P ER++
Sbjct: 589 GEV-IPCEEEMDVYKILGLKYKPPKERSV 616
>gi|171687419|ref|XP_001908650.1| hypothetical protein [Podospora anserina S mat+]
gi|170943671|emb|CAP69323.1| unnamed protein product [Podospora anserina S mat+]
Length = 830
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 102/326 (31%), Positives = 162/326 (49%), Gaps = 26/326 (7%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVI-EKLPFKIESADQVKGLPGIGKSMQD 268
N E+ + + Y + + R +Y +AI + ++ KI +A++ LP IG +
Sbjct: 503 NARTIEVLQSMCDYYTKINDRWRITAYRRAITTLRQQTTKKITTAEEAYTLPNIGSRIAR 562
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL 328
I+EI TT L +L++ + + + LF ++ +G + A K +GHRTL+DL + L
Sbjct: 563 KIEEICTTNNLHRLQYANLEPTDKVLDLFLKIHDVGLSRANKWISQGHRTLEDLLTKADL 622
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
+ +QR+ ++++ D+ +RIPR EV Q+ +Q+ V P+V +L GGSYRRG + GD+D
Sbjct: 623 SANQRVSIEHYSDLTSRIPRSEVTQLAAFVQREAFLVDPDVELLVGGSYRRGSDTSGDID 682
Query: 389 VVIMHPDRKSHKG---FLSKYVKKLKEMKFLREDLIFSTHSEE----------------- 428
+I S F++ + L + FL L S E
Sbjct: 683 FIITKRGTTSCSDLVPFMNSLISVLYKKNFLVATLSQSRREGEGSKFLGCCRLPPGGKWR 742
Query: 429 -----VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRA 483
+ P Y LI +TGND+ NR LRLLA KG RL+ GLF G+ GV
Sbjct: 743 RIDLLLVPETEYGAALIYFTGNDIFNRSLRLLAGKKGMRLNQRGLFRDVMRGRGRVGVTE 802
Query: 484 RTSLKFDTEKEVFDFLGFPWLEPHER 509
++ +E+ +F+ LG W EP ER
Sbjct: 803 GELVEGRSERRIFEVLGVRWREPSER 828
>gi|296414489|ref|XP_002836932.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295632777|emb|CAZ81123.1| unnamed protein product [Tuber melanosporum]
Length = 777
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/334 (31%), Positives = 165/334 (49%), Gaps = 49/334 (14%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N+ EI ++ Y L + RS Y KAI ++K +I A++ + LPGIG +
Sbjct: 457 NQRTIEILSEMQRYYEMLKDTWRSLGYRKAIATLKKQDHRIRFANEARELPGIGDRIALK 516
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EIV T +L +L++ + D + + LF ++G+G AQK + G+RTLDD+K LT
Sbjct: 517 IEEIVRTDRLRRLDYTKMDPEDEALRLFLGIYGVGGVKAQKWVDAGYRTLDDIKAHARLT 576
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
SQ+ G+++++D + RIPR EV+Q + + E+ E+ + GSYRRG CGD+D+
Sbjct: 577 SSQQTGIEHYEDFQQRIPRDEVKQHGDIAMRVAHEIDAELKLEILGSYRRGAKDCGDIDI 636
Query: 390 VI--------------------------MHPDRKSHKGFLSKYVKKLKEMKFLREDLIFS 423
+I + R S G K+ + R D +
Sbjct: 637 MITKEGAEAYAITGRISSPSIFFGFQLYIAIPRGSDSGTKWHGASKISSGPWRRIDFL-- 694
Query: 424 THSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRA 483
V P L+ +TGND+ NR LRLLA KG+RL+ +GL+ K +R
Sbjct: 695 -----VVPWAERGAALLYFTGNDIFNRSLRLLASKKGFRLNQSGLY--------KDVLRG 741
Query: 484 RTSLKF--------DTEKEVFDFLGFPWLEPHER 509
+ KF ++E+++F+ LG P+ P R
Sbjct: 742 KDRTKFTDGALMEGESEEKIFEILGVPYRPPEHR 775
>gi|345307659|ref|XP_001511409.2| PREDICTED: hypothetical protein LOC100080532 [Ornithorhynchus
anatinus]
Length = 1170
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 125/203 (61%), Gaps = 2/203 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N +ITE L Y G+ R+ SY KAI ++ + S + +PGIGK M +
Sbjct: 349 NPHITEKLEVLARAYTVQGDKWRALSYAKAINALKSFHKPVSSLQEACRIPGIGKRMAEK 408
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I EIV +G L KL+H E V + LF +WG G TAQ Y++G R+L+D++++ +LT
Sbjct: 409 IMEIVESGHLRKLDHL--SESVPVLELFSNIWGAGAKTAQMWYQQGFRSLEDVRSKATLT 466
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
Q +GLK+++D R+PR E ++E ++ A + + P ++ + GSYRRGKA+CGD+DV
Sbjct: 467 SQQVVGLKHYEDFLDRMPREEAAEIEETVRAAAQVLNPGLLAVSCGSYRRGKATCGDVDV 526
Query: 390 VIMHPDRKSHKGFLSKYVKKLKE 412
++ HPD +SH+G S+ + L++
Sbjct: 527 LVTHPDGRSHQGVFSRLLDGLRQ 549
>gi|255950146|ref|XP_002565840.1| Pc22g19370 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211592857|emb|CAP99225.1| Pc22g19370 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 711
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 109/343 (31%), Positives = 161/343 (46%), Gaps = 29/343 (8%)
Query: 192 FSSHHITDP-SLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKI 250
F+ DP + L NP N E+ +++ Y + R +Y KAI + K P KI
Sbjct: 371 FACMQKFDPDTKLDNP---NNRTIEVLQQMLEYYTQTADQWRVMAYRKAINALRKQPNKI 427
Query: 251 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 310
+ Q + +PGIG+ + D I+EIV T +L +LE+ + I F V+G G A K
Sbjct: 428 ATRAQARAIPGIGERLADKIEEIVLTNRLRRLENANHTPEDLIIKEFLGVYGAGLPQASK 487
Query: 311 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 370
+G+R+L DL LT QR+G++ D RIPR EVE +++KA + V ++
Sbjct: 488 WVAQGYRSLKDLLERAPLTKQQRIGVERHSDFAQRIPRKEVEAHGAIVRKAVQAVDRDMQ 547
Query: 371 ILCGGSYRRGKASCGDLDVVIMHPD---RKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 427
++ GGSYRRG +CGD+D +I P + L V +L FL+ L S+H +
Sbjct: 548 VIIGGSYRRGALTCGDVDCLITKPGATLEQIRTMMLGLVVPRLFNSGFLQASLAISSHQD 607
Query: 428 E---------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDT 466
P LI +TGND+ NR +RLLA KG L+
Sbjct: 608 GSKWHGASSLPGTTLWRRIDLLFVPDAEIGAALIYFTGNDIFNRSMRLLARKKGMCLNQK 667
Query: 467 GLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
GL+ A + + L+ E+ +F LG PW P R
Sbjct: 668 GLY-ADVLRNKQVKLNGGRLLEGRDERRIFALLGVPWRPPEHR 709
>gi|367044100|ref|XP_003652430.1| hypothetical protein THITE_2087560 [Thielavia terrestris NRRL 8126]
gi|346999692|gb|AEO66094.1| hypothetical protein THITE_2087560 [Thielavia terrestris NRRL 8126]
Length = 812
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 101/343 (29%), Positives = 160/343 (46%), Gaps = 43/343 (12%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N E+ + + Y + ++ R+ +Y KAI + + KI + ++ LP IG+ +
Sbjct: 468 NARTIEVLQSMCDYYTRINDNWRTLAYRKAIATLRRQSTKIMTEEEAYRLPNIGRRLAAK 527
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EI T KL +LE+ + + + F +++ +G + A K +G RTLDDL LT
Sbjct: 528 IEEIACTNKLRRLEYANDEPLDQVLETFLKIYDVGTSRANKWIAQGFRTLDDLLQRADLT 587
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+QR+G++ ++D+ TRIPR EV + +++ ++ P V +L GGSYRRG S GD+D+
Sbjct: 588 PNQRIGIERYEDLNTRIPRDEVTALFEYVKREAAQLDPHVELLVGGSYRRGSDSSGDIDI 647
Query: 390 VIMHPDRKS----------------HKGFLSKYVKKLKEMKFLREDLIFSTHSEEVYPRD 433
++ S KGFL + L + ++ H V PR+
Sbjct: 648 IVTKKGTSSSADLVPFLEDLIAVLTRKGFLVATLAALHAHRAGKDGPGSKWHGCCVLPRE 707
Query: 434 ---------------------------IYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDT 466
Y LI +TGND+ NR +RLLA KG RL+
Sbjct: 708 GGASSESGGDAPRHIWRRIDFLLVPESEYGAALIYFTGNDIFNRSMRLLASKKGMRLNQR 767
Query: 467 GLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
GL+ + V L+ EK +F+ LG W EP ER
Sbjct: 768 GLYKEVMRGKNRVKVAEGELLEGRDEKRIFELLGVKWREPWER 810
>gi|196004564|ref|XP_002112149.1| hypothetical protein TRIADDRAFT_50243 [Trichoplax adhaerens]
gi|190586048|gb|EDV26116.1| hypothetical protein TRIADDRAFT_50243 [Trichoplax adhaerens]
Length = 337
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 101/332 (30%), Positives = 167/332 (50%), Gaps = 34/332 (10%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYY-KAIPVIEKLPFKIESADQVKGLPGIGKSM 266
++N + +L + + + FS Y KA V+ K P +I S Q K L GIG+ +
Sbjct: 12 NVNAEFCDFLIELADYEKNVNRQMHKFSAYRKAANVLAKHPQRITSGAQAKKLEGIGEKI 71
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED 326
I+E + TG L KL D+ I+ V GIGPA A+K ++KG ++++DL+ +
Sbjct: 72 AQKIEEFINTGSLKKLNKIRADDTTVAINELTRVTGIGPAAARKFFDKGIKSIEDLRKQQ 131
Query: 327 S-LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L H Q++GL+Y DD + RIPR V + E +++K V + GSYRRG S G
Sbjct: 132 ILLNHHQQIGLRYVDDFEKRIPRKMVTEFEAIIKKNIHSVDTAYTVEVCGSYRRGAESSG 191
Query: 386 DLDVVIMHPDRKSHK------GFLSKYVKKLKEMKFLREDLIFST-------------HS 426
D+D ++ HP S K L + VKKL+ + + + +
Sbjct: 192 DIDFLLSHPSYTSDKKIGNKASLLHQVVKKLENAHVITDTISIGNTKFMGVCRLPDNDNP 251
Query: 427 EEVYPR-------DIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQ 479
+ ++ R +IY GL+ +TG+D+ N+R+R A KG+ L++ + P G+ G
Sbjct: 252 DNIHRRIDIRLDIEIYLCGLLYFTGSDLFNKRMRQTAIEKGFTLNEYCIRP--IGTTGVH 309
Query: 480 GVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 511
G ++ E+++FD + ++EPH+RN
Sbjct: 310 G----EAIPITCEEDIFDIIQMEYVEPHKRNF 337
>gi|281200766|gb|EFA74984.1| hypothetical protein PPL_12018 [Polysphondylium pallidum PN500]
Length = 880
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 107/343 (31%), Positives = 176/343 (51%), Gaps = 45/343 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N+ I +I ++ + G + +Y KAI I P K+ S + + L G+G +
Sbjct: 195 NQLICDILNEVSIFEKNKGATHKYNAYRKAIQSIRVHPKKLSSGSESQKLDGVGAKIAKK 254
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-EDSL 328
+QEI+ TGKL+KL + DEK+ I+ V GIGPA A+KL E+G +++ L+ +L
Sbjct: 255 VQEILDTGKLAKLIKLQSDEKLVAINNISRVSGIGPAIAKKLVEEGVTSIEKLRKISTTL 314
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
H Q++GLKYF+DI+ R+PR E+E++E + + +++ + + GSYRRG AS GD+D
Sbjct: 315 NHHQQVGLKYFEDIEQRVPRDEIEKIETICIELLKKIDKDAVAETCGSYRRGAASSGDID 374
Query: 389 VVIMHP--------DRKSHKGF--LSKYVKKLKEMKFLREDLIF---------------- 422
+++ HP D K ++ F + K VK LKE + +D+
Sbjct: 375 LLLTHPKYNKEWKADAKKNQSFNLIEKLVKALKEKGVIVDDISLGPMKYMGCCIVPNEMD 434
Query: 423 -STHSEEVYPRDI-------------YAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGL 468
S S++ P+ I Y FGL+ TG+D NR++R +A SKGY L + +
Sbjct: 435 KSKSSQKNPPKPIVRRIDFKLVPIESYYFGLLHNTGSDEFNRQMRAIALSKGYTLSEYSI 494
Query: 469 FPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 511
G+G + +E+ +FD +G + P +R+
Sbjct: 495 -NKILGAGANN---KSEDIIVHSERGIFDIIGMKYYAPTQRSF 533
>gi|340727567|ref|XP_003402113.1| PREDICTED: DNA polymerase beta-like [Bombus terrestris]
Length = 336
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 172/329 (52%), Gaps = 35/329 (10%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 268
N+++ + +L N R + ++ + +Y KA + L +++S + + LPGIG+ +
Sbjct: 14 NQDLCDFLMELANYERNVSKNIYKYNAYRKAASTLSTLSERVKSGQEARKLPGIGEKIAK 73
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NEDS 327
I E ++TGKL KLE KDE I+L V GIGP A++L + G +TLDDLK +++
Sbjct: 74 KIDEFLSTGKLQKLEDINKDESNVAINLLTRVSGIGPTKAKELVDSGIKTLDDLKKHQEK 133
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 387
L H Q++GLKYF+D + IPR E+EQ+E++++ + ++ E +I GSYRRGK GD+
Sbjct: 134 LNHHQKIGLKYFEDFEKGIPRKEIEQIEKIIKDSIVKLNKEYVITICGSYRRGKEESGDI 193
Query: 388 DVVIMHP------DRKSHKGFLSKYVKKLKEMKFLREDLI-------------------F 422
DV++ HP K L V+ L++ K + + F
Sbjct: 194 DVLLTHPTYTSKEKESKKKTSLKDVVECLEKRKLIVNTISLGQTKFMGVCQIPSNDKKPF 253
Query: 423 STHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPAT-YGSGGKQGV 481
+ P D Y ++ +TGND+ N+ +R A K Y L++ L T G+ G+
Sbjct: 254 RRLDIRLAPYDQYYCAVLYFTGNDLFNKSMRAHALEKNYTLNEYTLKRLTPEGTPGE--- 310
Query: 482 RARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+ K E+++F L P+ EP +RN
Sbjct: 311 ----AEKIACEEDIFRILKLPYKEPKDRN 335
>gi|20067679|emb|CAD29081.1| chimeric DNA-directed DNA polymerase bf4-4 [synthetic construct]
Length = 324
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 110/321 (34%), Positives = 180/321 (56%), Gaps = 27/321 (8%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI-ILCG--GSYRRGKAS 383
L H QR+GLKYF+D++ RIPR E+ QM+ ++ +++ PE I +CG GS RR +
Sbjct: 131 KLNHHQRIGLKYFEDVEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFGSLRREEKM 190
Query: 384 CGDLDVVIMHPDRKSHKGFLSKYVKKLK------EMKFLREDLIFSTHSEEVYPR---DI 434
D+D++I+ P++K K L + + E KF+ + S + E YP DI
Sbjct: 191 LNDVDLLIIVPEKKLLKHVLPNIRRFITDTLSKGETKFMGVCQLPSENDENEYPHRRIDI 250
Query: 435 Y-----AFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKF 489
+ + +TG ++ +R+ A KG+ +++ + P G GV A L
Sbjct: 251 RLAEEKPYAIFHFTGP--VSYLIRIRAALKGFTINEYTIRPL-----GVTGV-AGEPLPV 302
Query: 490 DTEKEVFDFLGFPWLEPHERN 510
D+E+++FD++ + + EP +R+
Sbjct: 303 DSEQDIFDYIQWRYREPKDRS 323
>gi|20067711|emb|CAD29097.1| chimeric DNA-directed DNA polymerase bf2-7a [synthetic construct]
Length = 320
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 107/319 (33%), Positives = 181/319 (56%), Gaps = 27/319 (8%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI-ILCG-GSYRRGKASC 384
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ PE I +CG GS RR +
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSGSLRREEKML 190
Query: 385 GDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFL------REDLIFSTHSEEVYPRDIYA-- 436
D+D++I+ P++K K L ++K + F R+ ++F ++ Y D++
Sbjct: 191 NDVDLLIIVPEKKLLKHVLPNI--RIKGLSFSVKVCGERKCVLFIEWEKKTYQLDLFTAL 248
Query: 437 -----FGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDT 491
+ + +TG ++ +R+ A KG+ +++ + P G GV A L D+
Sbjct: 249 AEEKPYAIFHFTGP--VSYLIRIRAALKGFTINEYTIRPL-----GVTGV-AGEPLPVDS 300
Query: 492 EKEVFDFLGFPWLEPHERN 510
E+++FD++ + + EP +R+
Sbjct: 301 EQDIFDYIQWRYREPKDRS 319
>gi|145476207|ref|XP_001424126.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124391189|emb|CAK56728.1| unnamed protein product [Paramecium tetraurelia]
Length = 609
Score = 161 bits (407), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 108/329 (32%), Positives = 173/329 (52%), Gaps = 29/329 (8%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N I E KL+ IY + R +Y KAI I+ L F I S++ +K +P IG+ +++
Sbjct: 283 NNQIIEELEKLLKIYTNEKDKGRCIAYRKAIGYIKSLTFPIRSSEDLKEMPTIGEKIKNK 342
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSL 328
I EI+ TG+L K++ + EK I+ VWGIGP TA Y KG +TLDDL KN+ L
Sbjct: 343 IIEIIQTGQLVKVQKLQGQEKNVAITQLSRVWGIGPTTAATFYFKGIKTLDDLRKNQHLL 402
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEV--LPEVI-ILCGGSYRRGKASCG 385
+Q++ L+ ++++ RIPR E + ++++ +++ +P + GSYRR K +CG
Sbjct: 403 NRNQQVCLQLVEELEQRIPRDEATIIYDIVKREIDDLSGVPGLYKATACGSYRREKETCG 462
Query: 386 DLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE------------------ 427
D+D++I D K+ GFL +++L E K L L E
Sbjct: 463 DMDILITRCDGKNTDGFLLNLIQRL-EGKLLTHHLTIPRRGEHDTESYMGIGRISNNAIH 521
Query: 428 -----EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVR 482
+ YP++ Y ++ +TG+D NR +RL A+ GY L D GL+P GS K+ +
Sbjct: 522 RRIDLKFYPKEQYGCAVLYFTGSDQYNRSMRLWAQKIGYSLSDHGLYPTQRGSQNKELWK 581
Query: 483 ARTSLKFDTEKEVFDFLGFPWLEPHERNL 511
+ + E +V+ LG + P ER++
Sbjct: 582 GEV-IACEEEIDVYRILGLQYKPPKERSV 609
>gi|326932793|ref|XP_003212497.1| PREDICTED: DNA polymerase beta-like [Meleagris gallopavo]
Length = 298
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 96/277 (34%), Positives = 153/277 (55%), Gaps = 33/277 (11%)
Query: 261 GIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLD 320
G+G + + I E ++TGKL KLE +D+ +I+ V GIGPA A+K E+G +TL+
Sbjct: 27 GVGAKIAEKIDEFLSTGKLRKLEKIRQDDTSASINFLTRVTGIGPAAARKFVEEGIKTLE 86
Query: 321 DL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRR 379
DL KNE LTH QR+GLKYF+D + RIPR E+ QM+ ++ K E V P I GS+RR
Sbjct: 87 DLRKNEHKLTHHQRIGLKYFEDFEKRIPREEMLQMQEIVLKEVENVDPNYIATVCGSFRR 146
Query: 380 GKASCGDLDVVIMHPDRKSHKG----FLSKYVKKLKEMKFL------------------- 416
G S GD+DV++ HP S L + V++L+++ F+
Sbjct: 147 GAESSGDMDVLLTHPTFTSESSKQSKLLHQVVEQLEKVHFVTDVLSKGDTKFMGVCQLPN 206
Query: 417 REDLIFSTHSE---EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATY 473
++D H + P+D Y G++ +TG+D+ N+ +R A G+ +++ + P
Sbjct: 207 KDDGTSYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEMGFTINEYTIRPL-- 264
Query: 474 GSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
G GV A +L + EK++FD++ + + EP +R+
Sbjct: 265 ---GVTGV-AGEALPVECEKDIFDYIQWKYREPKDRS 297
>gi|326476213|gb|EGE00223.1| DNA polymerase POL4 [Trichophyton tonsurans CBS 112818]
Length = 650
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 158/324 (48%), Gaps = 24/324 (7%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N E+ ++++ Y + R +Y +AI + + K+ + Q + GIG+ +
Sbjct: 325 NSRTIEVLQQMLSYYERTADQWRCLAYRRAIAALRRERNKVVTKSQALKIKGIGERLAAK 384
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EI T +L +LE + + +S F ++G+G A K +G+++LDDLK +LT
Sbjct: 385 IEEIAWTNRLRRLEQANMEPRDALLSQFLNIYGVGYQQASKWVAQGYKSLDDLKTRANLT 444
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+Q++G++ +DD + RIPR EVE ++++A + ++ GGSYRRG A GD+D+
Sbjct: 445 TNQKVGIERYDDFQKRIPREEVEAHGAIVRQAVLAMDSSYTVIIGGSYRRGAADSGDIDL 504
Query: 390 VIMHPD---RKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE------------------ 428
+I + H ++ V +L E FL+ L S+ +
Sbjct: 505 IITKEGVSLQVIHDQIMTVVVPQLFERGFLKTGLAVSSRVDGSKWHGASALPGNPVWRRI 564
Query: 429 ---VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRART 485
P D LI +TGND+ NR LRLLA KG L+ GLF G+ + A
Sbjct: 565 DLLFVPGDELGAALIYFTGNDIFNRSLRLLASKKGMCLNQKGLFSDIMRGPGRVKLNAGH 624
Query: 486 SLKFDTEKEVFDFLGFPWLEPHER 509
L+ EK +F+ L PW P R
Sbjct: 625 LLESRDEKRIFELLAVPWRPPEHR 648
>gi|328709018|ref|XP_001950059.2| PREDICTED: DNA polymerase beta-like [Acyrthosiphon pisum]
Length = 336
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 111/352 (31%), Positives = 179/352 (50%), Gaps = 40/352 (11%)
Query: 181 NTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAI 240
N +S A D ++ + L D KN+ NIY+ S +Y KA
Sbjct: 4 NKMSKRKAPSDSTNPNHDFCEFLIELADYEKNVAR------NIYK-------SNAYRKAA 50
Query: 241 PVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEV 300
+ K +I+S ++ + L GIG + I E + TGKL KL++ D+ +I V
Sbjct: 51 SALAKHGKRIKSGEEAQKLDGIGDKISKKIDEFLETGKLKKLDNIRNDDASVSIKELTRV 110
Query: 301 WGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQ 359
GIGPA A++LY+ G +D L KN+D L H Q LGLKY +D + +IPR+EV ++E++++
Sbjct: 111 SGIGPAKAKELYDSGVTNIDILLKNQDKLNHHQILGLKYLNDFEEKIPRNEVIEVEQIIK 170
Query: 360 KAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSH-----------------KGF 402
K + P+ + GSYRRGK GD+D +I HP SH K
Sbjct: 171 KTLHNLDPKYKVTICGSYRRGKEFSGDIDTLISHPSFMSHGLKKKSDKLQVVVDILKKNN 230
Query: 403 LSKYVKKLKEMKFL---REDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK 459
L L E KF+ + + I + P D + ++ +TG+D+ N+++R A ++
Sbjct: 231 LITETISLGEAKFMGVCKVNRISRRLDIRLNPYDQFYCAVLYFTGSDLFNKQMREHAINQ 290
Query: 460 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 511
G+ L++ L P GS G G ++ +EK++FD++ +P+ +P ERN+
Sbjct: 291 GFTLNEYTLRPM--GSTGIPG----EPVEITSEKDIFDYIDYPYKKPEERNI 336
>gi|326480832|gb|EGE04842.1| DNA polymerase POL4 [Trichophyton equinum CBS 127.97]
Length = 650
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 158/324 (48%), Gaps = 24/324 (7%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N E+ ++++ Y + R +Y +AI + + K+ + Q + GIG+ +
Sbjct: 325 NSRTIEVLQQMLSYYERTADQWRCLAYRRAIAALRRERNKVVTKSQALKIKGIGERLAAK 384
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EI T +L +LE + + +S F ++G+G A K +G+++LDDLK +LT
Sbjct: 385 IEEIAWTNRLRRLEQANMEPRDALLSQFLNIYGVGYQQASKWVAQGYKSLDDLKTRANLT 444
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+Q++G++ +DD + RIPR EVE ++++A + ++ GGSYRRG A GD+D+
Sbjct: 445 TNQKVGIERYDDFQKRIPREEVEAHGAIVRQAVLAMDSSYTVIIGGSYRRGAADSGDIDL 504
Query: 390 VIMHPD---RKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE------------------ 428
+I + H ++ V +L E FL+ L S+ +
Sbjct: 505 IITKEGVSLQVIHDQIMTVVVPQLFERGFLKTGLAVSSRVDGSKWHGASALPGNPVWRRI 564
Query: 429 ---VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRART 485
P D LI +TGND+ NR LRLLA KG L+ GLF G+ + A
Sbjct: 565 DLLFVPGDELGAALIYFTGNDIFNRSLRLLASKKGMCLNQKGLFSDIMRGPGRVKLNAGH 624
Query: 486 SLKFDTEKEVFDFLGFPWLEPHER 509
L+ EK +F+ L PW P R
Sbjct: 625 LLESRDEKRIFELLAVPWRPPEHR 648
>gi|326437288|gb|EGD82858.1| DNA polymerase beta [Salpingoeca sp. ATCC 50818]
Length = 353
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 105/338 (31%), Positives = 165/338 (48%), Gaps = 42/338 (12%)
Query: 208 DLNKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSM 266
++N +I +L + + + + +Y KA I P +I S + K L G+G+ +
Sbjct: 22 NVNADICAFLNELADYEKNVSRHIHKHNAYRKASRAIAAHPSRISSGKEAKALQGVGEKI 81
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED 326
I E ++TGKL KLE D + I L V G GPA A+K ++G TL++L +
Sbjct: 82 AKKIDEFLSTGKLKKLEDIHADPTSKAIQLIASVVGFGPAAARKFVDQGVTTLEELAKQS 141
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
LT +QR+GLK+ D + RIPR EV+++ + EV P++ GSYRRG +S GD
Sbjct: 142 GLTSTQRIGLKHHHDFEERIPRDEVDRLRKQAFAIISEVDPKLTAEVCGSYRRGASSSGD 201
Query: 387 LDVVIMHPDRKS-HK------------GFLSKYVKKLKEMKFLREDLI------------ 421
+D+++ HP+ S HK G L+K V +++ KF+ + L
Sbjct: 202 IDILMTHPEFTSEHKDEKGKITKPRFAGLLAKVVAAMQKHKFVTDSLSCGQTKFMGVCRD 261
Query: 422 ----------FSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPA 471
+ +P D Y L+ +TG+D LN+ +R A G+ L++ + P
Sbjct: 262 REAPKAGEGKYRRIDVRFWPADQYPLALLYFTGSDELNKDMRRKAIDLGFHLNEYAIRP- 320
Query: 472 TYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
G G G +L EK+VFD+L +LEP ER
Sbjct: 321 -MGEKGTMG----DALPVTCEKDVFDYLDMKYLEPSER 353
>gi|425779219|gb|EKV17296.1| DNA polymerase POL4, putative [Penicillium digitatum PHI26]
gi|425779475|gb|EKV17527.1| DNA polymerase POL4, putative [Penicillium digitatum Pd1]
Length = 547
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 109/347 (31%), Positives = 158/347 (45%), Gaps = 37/347 (10%)
Query: 192 FSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE 251
F+ DP + P N E+ +++ Y + R +Y KAI V+ K P KI
Sbjct: 207 FACMQKFDPDTKFGNP--NNRTIEVLQQMLEYYTQTADQWRVMAYRKAINVLRKQPNKIA 264
Query: 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 311
+ Q + +PGIG+ + D I+EIV T +L +LE+ + I F V+G G A K
Sbjct: 265 TRAQARAIPGIGERLADKIEEIVLTNRLRRLENATHTPEDLIIKEFLGVYGAGLPQASKW 324
Query: 312 YEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII 371
+G+R+L DL LT QR+G++ D RIPR EVE +++K + V ++ +
Sbjct: 325 VAQGYRSLKDLLEMAPLTKQQRIGVERHSDFAQRIPRKEVEAHGAIVRKVVQTVDRDMQV 384
Query: 372 LCGGSYRRGKASCGDLDVVIMHPD---RKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE 428
+ GGSYRRG +CGD+D +I P + L V L FL+ L STH +
Sbjct: 385 IIGGSYRRGALTCGDVDCLITKPGASLEQIRTMMLGLVVPILFNSGFLQASLAISTHQDG 444
Query: 429 ---------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTG 467
P LI +TGND+ NR +RLLA KG L+ G
Sbjct: 445 SKWHGASALPGTTLWRRIDLLFVPDAEIGAALIYFTGNDMFNRSMRLLARKKGMCLNQKG 504
Query: 468 LFPATYGS-----GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
L+ + G + V R E+ +F LG PW P R
Sbjct: 505 LYGDVLRNQQVKLNGGRLVEGR------DERRIFAVLGVPWRPPEHR 545
>gi|453089221|gb|EMF17261.1| Nucleotidyltransferase [Mycosphaerella populorum SO2202]
Length = 619
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 101/325 (31%), Positives = 159/325 (48%), Gaps = 25/325 (7%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N + EI ++ Y G++ R +Y KAI + + KI + + LP IG + +
Sbjct: 293 NTDTIEILQQMAEHYGQTGDEWRVRAYRKAIATLRRHTVKINTKAEAGALPNIGPRLAEK 352
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSL 328
I+EIV T +L +L+H + + + F V+G G A + G+RTL +L + SL
Sbjct: 353 IEEIVFTRRLRRLDHARAEPHDQILQTFLGVYGAGIKQATEWVNAGYRTLGELLEKAPSL 412
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
T +Q +G+ +++D TRI R EVE+ ++ A + P ++ GGSYRRG GD+D
Sbjct: 413 TPNQMIGIAHYEDFATRISRSEVEKHGSFVRTALHRLDPRCEVIIGGSYRRGAKDSGDID 472
Query: 389 VVIMHPDRKS---HKGFLSKYVKKLKEMKFLREDLIFSTHSEE----------------- 428
+I PD + L + V +L E FL +L S+ +
Sbjct: 473 CIITRPDTGAAHLRNIVLGQLVPQLTESGFLVANLAMSSRDDGSKWHGASCLPGSKIWRR 532
Query: 429 ----VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRAR 484
+ P D LI +TGND+ NR LRLLA +KG RL+ GLF ++ +
Sbjct: 533 LDLLLVPSDEMGAALIYFTGNDIFNRSLRLLASTKGMRLNQRGLFKDVLRGSNRERLCQG 592
Query: 485 TSLKFDTEKEVFDFLGFPWLEPHER 509
T ++ EK++F+ LG P+ P R
Sbjct: 593 TLVEGKDEKKIFEALGVPFRPPEHR 617
>gi|20067713|emb|CAD29142.1| chimeric DNA-directed DNA polymerase bf2-7 [synthetic construct]
Length = 329
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 107/324 (33%), Positives = 178/324 (54%), Gaps = 28/324 (8%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI------ILCGGSYRRG 380
L H QR+GLKYF+D + RI + + L + E ++I I+ GS RR
Sbjct: 131 KLNHHQRIGLKYFEDFEKRILIQGKKIVNHLRSRLAFEYNGQLIKILSKNIVAVGSLRRE 190
Query: 381 KASCGDLDVVIMHPDRKSHKGFL-SKYVKKLK---EMKFLREDLIFSTHSEEVY------ 430
+ D+D++I+ P++K K L ++++ + E KF+ + S + E Y
Sbjct: 191 EKMLNDVDLLIIVPEKKLLKHVLPNRFITDTRSKGETKFMGVCQLPSENDENEYPHRRID 250
Query: 431 ----PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTS 486
P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P G GV A
Sbjct: 251 IRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTGV-AGEP 304
Query: 487 LKFDTEKEVFDFLGFPWLEPHERN 510
L D+E+++FD++ + + EP +R+
Sbjct: 305 LPVDSEQDIFDYIQWRYREPKDRS 328
>gi|308808205|ref|XP_003081413.1| DNA polymerase lambda (ISS) [Ostreococcus tauri]
gi|116059875|emb|CAL55582.1| DNA polymerase lambda (ISS) [Ostreococcus tauri]
Length = 589
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 144/544 (26%), Positives = 241/544 (44%), Gaps = 75/544 (13%)
Query: 12 ALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMD----LE 67
AL S + G+R F V +R + L++MG +V E+ VTHV+A + L
Sbjct: 77 ALTSASLMEGVRAFFV--NFTKKRAEALGNALIRMGGSVCERADDSVTHVVACEESSALT 134
Query: 68 ALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQG 127
L+ + ++ + + I +W+ +S + + + IADR SQ
Sbjct: 135 KALESIDREDVVK-----ITPEWITESYKQRRPLPVSATNFEPRTRVAVIADRPHSQ--- 186
Query: 128 NGNTSSDGESSHRKKIKSSTEDVEHFQAESK-GDVETNALSEAPNSPMSSESLTNTLSTA 186
TSS + +++ E+ + S G + T+ L++ +E L + S
Sbjct: 187 EAATSSGDSKALAVRVRKERENALAIRRSSGFGTIWTSDLAD-------NEKLEKSRSKF 239
Query: 187 SASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYR-ALGEDRRSFSYYKAIPVIEK 245
S P + P + N + ++ + +IY AL + R+ Y A +
Sbjct: 240 SCQPGEHNEKAM-------PIECNTKVADLLKGMADIYEDALRDQYRAKQYAAAASALRS 292
Query: 246 LPFKIESADQVKGLPGIGKS---MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWG 302
L F+I S + +P + K ++ ++ EI+ TGKL LE V+ + G
Sbjct: 293 LNFEITSINDCDVVPMLKKKDGKIRKYVGEILNTGKLKALEELRARPDVKACLELCGIHG 352
Query: 303 IGPATAQKLYEKGHRTLDDLKN---EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQ 359
+GP TA+ L+ KG+ T+ DL+ E+ LT +Q++GLKY+++ K RIPR EV + ++
Sbjct: 353 VGPVTARSLFAKGYATVADLRARAPENLLTPAQKIGLKYYEEFKERIPREEVGFIATAVR 412
Query: 360 KAGEEVLP-EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLK------E 412
+A EV C GS+RRGK + GD+DV++ D L + L+
Sbjct: 413 EAANTFQKDEVHCYCVGSFRRGKETSGDIDVLVECRDYSLANELLMHILSDLRPGGTSPR 472
Query: 413 MKFLREDLIFSTHSE-------------------------EVYPRDIYAFGLIAWTGNDV 447
L +DL+ H+ +VY + L+ +TG+D
Sbjct: 473 SGILTDDLLVGDHTYMGVAALLKPLKDDDDKPPIHRRVDIKVYDSESLPTALLYFTGSDK 532
Query: 448 LNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPH 507
NR +RL A+ KG+ L D GLF A VRA+ E++VFD LG ++ P
Sbjct: 533 FNRSMRLWAKKKGFNLQDKGLF-ADRSQAQASRVRAK------GEEDVFDALGLDYVPPE 585
Query: 508 ERNL 511
+RN+
Sbjct: 586 KRNV 589
>gi|400603358|gb|EJP70956.1| DNA polymerase POL4, putative [Beauveria bassiana ARSEF 2860]
Length = 825
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 115/369 (31%), Positives = 174/369 (47%), Gaps = 53/369 (14%)
Query: 192 FSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE 251
F+ H SL + N ++ +++ Y + R +Y +AI + + P KI
Sbjct: 457 FACAHAG--SLDAHASSANARTVQVLQAMLSYYERTSDTWRVMAYRRAIATLRRQPTKIS 514
Query: 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDE-----KVRTISLFGEVWGIGPA 306
SA + LPG+G+ + I+EI TT +L +LEH E+D+ + LF V G+GPA
Sbjct: 515 SAREALRLPGVGQRLAAKIEEIATTDRLQRLEHAERDDDDGGGANAALRLFLGVHGVGPA 574
Query: 307 TAQKLYEKGHRTLDDLKNEDS---LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGE 363
A + G RTL+D+ +DS LT QRLG++ ++D+ T+IPR EVE + +++
Sbjct: 575 LAAQWAAWGMRTLEDVVRKDSGIRLTPGQRLGIERYEDLHTKIPRDEVEALAAVVRAEAA 634
Query: 364 EVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKG---FLSKYVKKLKEMKFLREDL 420
+ V I GGSYRRG GD+D+++ PD FL + V +L+ F+ L
Sbjct: 635 RIDAAVEITIGGSYRRGAPVSGDVDMMLSRPDTTCAADLAPFLRELVTRLQRSGFIVATL 694
Query: 421 I-----------------------------FSTHSEEVYPRDIYAFGLIAWTGNDVLNRR 451
F V P LI +TG+DV NR
Sbjct: 695 AGGGGSDSSSSSSSSSIWQGCCVLPGGSGRFRRMDLLVVPETEMGGALIYFTGDDVFNRS 754
Query: 452 LRLLAESKGYRLDDTGLF------PATYGSGGKQGVRARTSLKFD-----TEKEVFDFLG 500
LRLLA +G RL+ GL+ A G G++G R +++ D E+ +F+ LG
Sbjct: 755 LRLLARKRGMRLNQKGLYKRIESAAAAAGENGRRGRRGMVAVEGDLVEGRCERRIFEILG 814
Query: 501 FPWLEPHER 509
W EP ER
Sbjct: 815 VEWREPTER 823
>gi|20067693|emb|CAD29088.1| chimeric DNA-directed DNA polymerase bf4-15 [synthetic construct]
Length = 319
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 108/318 (33%), Positives = 176/318 (55%), Gaps = 26/318 (8%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ PE I GS RR + D
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYI--ATGSLRREEKMLND 188
Query: 387 LDVVIMHPDRKSHKGFLSKYVKKLK------EMKFLREDLIFSTHSEEVYPR---DIY-- 435
+D++I+ P++K K L + + E KF+ + S + E YP DI
Sbjct: 189 VDLLIIVPEKKLLKHVLPNIRRFITDTLSKGETKFMGVCQLPSENDENEYPHRRIDIRLA 248
Query: 436 ---AFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTE 492
+ + +TG ++ +R+ A KG+ +++ + P G GV A L D+E
Sbjct: 249 EEKPYAIFHFTGP--VSYLIRIRAALKGFTINEYTIRPL-----GVTGV-AGEPLPVDSE 300
Query: 493 KEVFDFLGFPWLEPHERN 510
+++FD++ + + EP +R+
Sbjct: 301 QDIFDYIQWRYREPKDRS 318
>gi|47226550|emb|CAG08566.1| unnamed protein product [Tetraodon nigroviridis]
Length = 311
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 100/291 (34%), Positives = 154/291 (52%), Gaps = 29/291 (9%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN+ IT+ +L N + + + +Y KA I K P KI + ++ K L G+G +
Sbjct: 11 LNEGITDFLVELANYEKNVNRAIHKYNAYRKAASAIAKYPSKIRNGEEAKKLDGVGAKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-ED 326
+ I E + TGKL KLE D+ +I+L V GIGPA A+K +++G +TL+DLK E
Sbjct: 71 EKIDEFLQTGKLRKLEKIRNDDTSTSINLLTRVTGIGPAAARKFFDEGVKTLEDLKKIEH 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H Q++GL YF++ + RIPR E+E+ME L+ K ++ E I GSYRRG AS GD
Sbjct: 131 KLNHHQKIGLMYFEEFEKRIPRAEMEKMESLILKELTKIDSEYIGTICGSYRRGAASSGD 190
Query: 387 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLRE-----DLIF--------STHSEEV 429
+D+++ HP S L V L+ + F+ + D F EE
Sbjct: 191 IDILLTHPKFTSETDKQPKLLHAVVDHLESIGFVTDTLSKGDTKFMGVCQLQDGDEDEEE 250
Query: 430 Y----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 470
Y P+D Y G++ +TG+D+ N+ +R A +G+ L++ + P
Sbjct: 251 YLHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEQGFTLNEYTIRP 301
>gi|20067689|emb|CAD29086.1| chimeric DNA-directed DNA polymerase bf4-12 [synthetic construct]
Length = 318
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 108/317 (34%), Positives = 175/317 (55%), Gaps = 25/317 (7%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ PE I GS RR + D
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSLRREEKMLND 190
Query: 387 LDVVIMHPDRKSHKG-----FLSKYVKKLKEMKFLREDLIFSTHSEEVYPR---DIY--- 435
+D++I+ P++K K F++ + K E KF+ + S + E YP DI
Sbjct: 191 VDLLIIVPEKKLLKHVLPNRFITDTLSK-GETKFMGVCQLPSENDENEYPHRRIDIRLAE 249
Query: 436 --AFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEK 493
+ + +TG R+R + G+ +++ + P G GV A L D+E+
Sbjct: 250 EKPYAIFHFTGPVSYLIRIR---AALGFTINEYTIRPL-----GVTGV-AGEPLPVDSEQ 300
Query: 494 EVFDFLGFPWLEPHERN 510
++FD++ + + EP +R+
Sbjct: 301 DIFDYIQWRYREPKDRS 317
>gi|392563198|gb|EIW56377.1| hypothetical protein TRAVEDRAFT_59518 [Trametes versicolor
FP-101664 SS1]
Length = 743
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 97/266 (36%), Positives = 144/266 (54%), Gaps = 29/266 (10%)
Query: 232 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
R SY KAI + K P +I+S ++ + GIG I EIV TG L +++H E+ E V
Sbjct: 434 RVMSYNKAISALRKYPARIKSYEEAVAIRGIGDKTARKIMEIVETGNLRRIQH-ERTEDV 492
Query: 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDL---KNEDSLTHSQRLGLKYFDDIKTRIPR 348
++ F V+G+G +TA+K Y G RTL+D+ K L+ Q +GL+Y+ DI TRIPR
Sbjct: 493 ASVQTFLGVYGVGASTARKWYNSGCRTLEDVAARKGGIKLSTEQEIGLRYYQDINTRIPR 552
Query: 349 HEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP--DRKSHKGFLSKY 406
EV ++ ++ A ++ P V I GSYRRGK CGD+DV+I D K+H+G L +
Sbjct: 553 AEVAEIYAKVKAAALKIDPNVFIEVMGSYRRGKPDCGDIDVLITRCTDDGKTHQGVLRRL 612
Query: 407 VKKLKEMKFLREDLIFSTHSEE---VY----PRDIYAF----------------GLIAWT 443
+K+L + +DL ++ VY RD ++ L+ +T
Sbjct: 613 LKELHRQGVVTDDLCLPDDFDDLELVYRGLCRRDSHSLRRRIDILTVPWKSRGAALLYYT 672
Query: 444 GNDVLNRRLRLLAESKGYRLDDTGLF 469
G+D+ NR LRL A GY L+ GL+
Sbjct: 673 GDDIFNRSLRLKANKMGYSLNQRGLY 698
>gi|393243723|gb|EJD51237.1| Nucleotidyltransferase [Auricularia delicata TFB-10046 SS5]
Length = 324
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 101/308 (32%), Positives = 158/308 (51%), Gaps = 31/308 (10%)
Query: 232 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
R SY KAI + + P +I+SA++ + L G+GK D I EI+ TG L +L+ E++
Sbjct: 15 RVISYRKAISALRRHPTRIKSAEEAERLHGVGKKTADKIMEILGTGNLQRLK-TEREHGH 73
Query: 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS---LTHSQRLGLKYFDDIKTRIPR 348
++LF ++ +G A + Y KG RTLDD++ L +Q +GL+Y+DD+ R+PR
Sbjct: 74 DVVALFRGIYSVGSKIAWEWYAKGLRTLDDVRERKGGIRLNSAQEIGLRYYDDLNERMPR 133
Query: 349 HEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMH--PDRKSHKGFLSKY 406
E ++ ++++ ++ P + + GSYRR K +CGD+D++I D K+H G L K
Sbjct: 134 AEAGEIFGMIKQRVLDIDPNLTLEIMGSYRRRKETCGDIDILITRNPSDGKTHAGVLRKL 193
Query: 407 VKKLKEMKFLREDLIF--STHSEEV---------------------YPRDIYAFGLIAWT 443
++ L L E+L TH+ E P + + L+ +T
Sbjct: 194 LRVLHADGILTENLSMPHDTHALEAKYMGICRRDATSKRRRIDILTIPFEQWGGALLYFT 253
Query: 444 GNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKF--DTEKEVFDFLGF 501
G+D+ NR +RL A G L+ GL+ K + F TEKE+FD LG
Sbjct: 254 GDDIFNRSMRLKANKMGMSLNQRGLYRNVIRDPTKWNNKLDDGELFASKTEKEIFDALGV 313
Query: 502 PWLEPHER 509
PW EP ER
Sbjct: 314 PWQEPWER 321
>gi|20067701|emb|CAD29092.1| chimeric DNA-directed DNA polymerase bf4-19 [synthetic construct]
Length = 329
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 110/327 (33%), Positives = 178/327 (54%), Gaps = 34/327 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI-ILCG--GSYRRGKAS 383
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ PE I +CG GS RR +
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFGSLRREEKM 190
Query: 384 CGDLDVVIMHPDRKSHKGFLSKYVKKLK------EMKFLREDLIFSTHSEEVY------- 430
D+D++I+ P++K K L + + E KF+ + S + E Y
Sbjct: 191 LNDVDLLIIVPEKKLLKHVLPNIRRFITDTLSKGETKFMGVCQLPSENDENEYPHRRIDI 250
Query: 431 ---PRDIYA----FGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRA 483
P+D YA + + +TG R+R + G+ +++ + P G GV A
Sbjct: 251 RLIPKDQYAEEKPYAIFHFTGPVSYLIRIR---AALGFTINEYTIRPL-----GVTGV-A 301
Query: 484 RTSLKFDTEKEVFDFLGFPWLEPHERN 510
L D+E+++FD++ + + EP +R+
Sbjct: 302 GEPLPVDSEQDIFDYIQWRYREPKDRS 328
>gi|443726229|gb|ELU13471.1| hypothetical protein CAPTEDRAFT_183536 [Capitella teleta]
Length = 299
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 99/299 (33%), Positives = 161/299 (53%), Gaps = 29/299 (9%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
+Y KA I K P KI S + K L G+G + I E + TGKL K+E ++ I
Sbjct: 6 AYRKAAGAIAKHPEKINSGKEAKKLEGVGDKIGKKIDEFIATGKLVKIEKIRANDTNMAI 65
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQ 353
+ V GIGPA AQKL +G +++DL KN++ L Q +GLK+F+D + RIPR E+ Q
Sbjct: 66 NALTRVTGIGPAAAQKLVSEGIMSIEDLRKNQEKLNKQQVIGLKHFEDFEERIPREEMLQ 125
Query: 354 MERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP----DRKSHK-GFLSKYVK 408
++ K E+V + GS+RRG ++ GD+D+++ HP D K+ + L V+
Sbjct: 126 LQEFSLKQIEKVDSDYAAEVCGSFRRGASNSGDIDILLTHPSYTSDSKTKQPKLLHDVVR 185
Query: 409 KLKEMKFLREDL---------IFSTHSEEVY--------PRDIYAFGLIAWTGNDVLNRR 451
+L+ F+ + L + +SE ++ P D Y L+ +TG+D+ N+
Sbjct: 186 QLESTGFVTDTLSLGDSKFMGVCRYNSEHLFRRIDIRLIPHDQYFCALLYFTGSDMFNKN 245
Query: 452 LRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+R +A +G+ L++ + P GS G G +L +E++VFD++G + +P ERN
Sbjct: 246 MRTVALEQGFTLNEYCIRPV--GSTGIPG----EALPVSSEEDVFDYVGMKFKKPSERN 298
>gi|336379068|gb|EGO20224.1| hypothetical protein SERLADRAFT_452929 [Serpula lacrymans var.
lacrymans S7.9]
Length = 517
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 102/334 (30%), Positives = 169/334 (50%), Gaps = 35/334 (10%)
Query: 210 NKNITEIFGKLINIYRALGEDR---RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSM 266
N++I +L+ ++++ D R Y K I + P +I+S ++ + + G+G+
Sbjct: 182 NQDIIHKLQELMELHKSKASDDDHWRVIGYAKCIRALRNYPRRIKSLNEARAIRGVGEKT 241
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED 326
I EI+ TG L ++E +E+ E + ++F ++G+G A Y G RTLDD+K
Sbjct: 242 ALKIMEIIKTGDLRRIE-YERTEDIEATTIFQGIYGVGRQIALMWYANGCRTLDDIKARK 300
Query: 327 S---LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKAS 383
++ Q +G++++DDI R+PR E +Q+ L+++ + P + I GS+RRGKA
Sbjct: 301 GGIKVSSVQDIGIQFYDDINARMPRAEAQQIFTLVKQQALALDPRLFIEIMGSFRRGKAD 360
Query: 384 CGDLDVVIMHP--DRKSHKGFLSKYVKKLKEMKFLREDLI----FST---------HSEE 428
CGD+D+++ P D K+H G L + L L EDL FS+ H E
Sbjct: 361 CGDIDILLTRPVDDGKTHSGLLLNLLSSLHAADILTEDLSLPDDFSSLELSYRGLCHLPE 420
Query: 429 -----------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGG 477
P + L+ +TG+D+ NR +RL A GY L+ GL+
Sbjct: 421 EGSRRRRIDILCVPWERRGAALLYFTGDDIFNRAIRLKANVLGYSLNQRGLYHGVVRDPR 480
Query: 478 KQGVRAR--TSLKFDTEKEVFDFLGFPWLEPHER 509
+ ++ T + +TE+E+F LG PW EPHER
Sbjct: 481 DRRIKVCEGTIIASETEEEIFKILGVPWQEPHER 514
>gi|20067707|emb|CAD29095.1| chimeric DNA-directed DNA polymerase bf2-2 [synthetic construct]
Length = 327
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 106/324 (32%), Positives = 178/324 (54%), Gaps = 30/324 (9%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI------ILCGGSYRRG 380
L H QR+GLKYF+D + I ++ + L + E ++I I+ GS RR
Sbjct: 131 KLNHHQRIGLKYFEDFEKLIQGKKI--VNHLRSRLAFEYNGQLIKILSKNIVAVGSLRRE 188
Query: 381 KASCGDLDVVIMHPDRKSHKGFL-SKYVKKLK---EMKFLREDLIFSTHSEEVY------ 430
+ D+D++I+ P++K K L ++++ + E KF+ + S + E Y
Sbjct: 189 EKMLNDVDLLIIVPEKKLLKHVLPNRFITDTRSKGETKFMGVCQLPSENDENEYPHRRID 248
Query: 431 ----PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTS 486
P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P G GV A
Sbjct: 249 IRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTGV-AGEP 302
Query: 487 LKFDTEKEVFDFLGFPWLEPHERN 510
L D+E+++FD++ + + EP +R+
Sbjct: 303 LPVDSEQDIFDYIQWRYREPKDRS 326
>gi|156052889|ref|XP_001592371.1| hypothetical protein SS1G_06612 [Sclerotinia sclerotiorum 1980]
gi|154704390|gb|EDO04129.1| hypothetical protein SS1G_06612 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 845
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 106/369 (28%), Positives = 171/369 (46%), Gaps = 68/369 (18%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSM 266
P+ N++ EI ++ Y +G+ RS SY +A ++ I + D+ +P IG+ +
Sbjct: 480 PNPNQHTIEILSRMREYYERIGDQWRSRSYLQACCQLKNQLTLIRTYDEAIQIPKIGERI 539
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED 326
I+ IV TG+L +LE+ E + + + LF ++G+ A K +GHRT DL+
Sbjct: 540 AKKIEGIVLTGRLLRLENAEAEPDDKILKLFMGIYGVNFKLASKWISQGHRTFADLEQNI 599
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L+ SQ++G+ +++D++ RIPR E+E++ + K + + P++ I GGSYRRG S GD
Sbjct: 600 KLSPSQQIGITHYEDLQLRIPRAEIEELGTHITKTAQSLDPDIEITIGGSYRRGAKSSGD 659
Query: 387 LDVVIMHPDRKSHK-------GFLSKYVKKLKEMKFLREDLIF----------------- 422
+D++I K+H FL+ VK L + +FL L
Sbjct: 660 IDIIIT----KAHTISTTQLFPFLTSLVKILTDSQFLVAALAVPHNNEGSKWHGCCVLPS 715
Query: 423 --------STHSEE-----------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRL 463
+TH + + P LI +TG+D+ NR +RLLA KG RL
Sbjct: 716 SSSSPSSPTTHRDPHHNPWRRIDFLIVPSTQLGAALIYFTGDDIFNRSMRLLAGKKGMRL 775
Query: 464 DDTGLFPATYGS---------------------GGKQGVRARTSLKFDTEKEVFDFLGFP 502
+ GLF ++ V ++ EK +F+ LG P
Sbjct: 776 NQRGLFKDVMRGGWSGGGEGNEVGRGGGSGGRWNSRKKVTDGMLVEGRDEKRIFEILGVP 835
Query: 503 WLEPHERNL 511
W EP ER L
Sbjct: 836 WREPWERVL 844
>gi|335304364|ref|XP_003134280.2| PREDICTED: DNA polymerase beta-like [Sus scrofa]
Length = 248
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 85/218 (38%), Positives = 132/218 (60%), Gaps = 6/218 (2%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL K+ED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKHED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL 420
+DV++ HP+ S L + V++L+++ F+ + L
Sbjct: 191 MDVLLTHPNFTSESAKQPKLLHRVVEQLQKVHFITDTL 228
>gi|20067681|emb|CAD29082.1| chimeric DNA-directed DNA polymerase bf4-7 [synthetic construct]
Length = 325
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 109/324 (33%), Positives = 176/324 (54%), Gaps = 32/324 (9%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ PE I GS RR + D
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYI--ATGSLRREEKMLND 188
Query: 387 LDVVIMHPDRKSHKGFLSKYVKKLK---------EMKFLREDLIFSTHSEEVYPR---DI 434
+D++I+ P++K K L K + E KF+ + S + E YP DI
Sbjct: 189 VDLLIIVPEKKLLKHVLPNIRIKGRFITDTLSKGETKFMGVCQLPSENDENEYPHRRIDI 248
Query: 435 Y--------AFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTS 486
+ + +TG ++ +R+ A KG+ +++ + P G GV A
Sbjct: 249 RLIPKAEEKPYAIFHFTGP--VSYLIRIRAALKGFTINEYTIRPL-----GVTGV-AGEP 300
Query: 487 LKFDTEKEVFDFLGFPWLEPHERN 510
L D+E+++FD++ + + EP +R+
Sbjct: 301 LPVDSEQDIFDYIQWRYREPKDRS 324
>gi|440637853|gb|ELR07772.1| hypothetical protein GMDG_00395 [Geomyces destructans 20631-21]
Length = 784
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 99/326 (30%), Positives = 155/326 (47%), Gaps = 26/326 (7%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N I ++ Y + + R Y KAI ++K I +A + LP IG+ + D
Sbjct: 457 NARTISILQEMAAYYTRMDDTWRPIGYRKAITTLKKQNKLISTAGEAVKLPAIGQRIADK 516
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EIV T KL +L++ + D + LF ++G+G A A ++G+ TL+DL SLT
Sbjct: 517 IEEIVHTDKLRRLDNTKSDRNDMILQLFLGIYGVGIAQATTWLQQGYTTLEDLLAHASLT 576
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+QRLG+ ++ D +TRIPR EV + +++ + + + GSYRRG SCGD+DV
Sbjct: 577 DNQRLGIDHYQDFQTRIPRAEVSALAKIVADTARGIDRGIEAIVAGSYRRGAESCGDIDV 636
Query: 390 VIMHPDRKSHK---GFLSKYVKKLKEMKFLREDL-IFSTHSEEVY--------------- 430
++ + L K V +L+ L L + T S +
Sbjct: 637 LLTKSGTSACSELTPLLYKLVSQLRASGMLVAPLSVGRTESSSKWHGCCVLPGQGPPIWR 696
Query: 431 -------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRA 483
P L+ +TGND+ NR +RLLA +G RL+ GL+ G+ +
Sbjct: 697 RIDFHLAPASELGAALLYFTGNDIFNRSIRLLASKRGMRLNQRGLYKDVMRGPGRVKLNE 756
Query: 484 RTSLKFDTEKEVFDFLGFPWLEPHER 509
++ EK++F LG PW P ER
Sbjct: 757 GELVEGADEKKIFAELGVPWRPPEER 782
>gi|336366399|gb|EGN94746.1| hypothetical protein SERLA73DRAFT_96118 [Serpula lacrymans var.
lacrymans S7.3]
Length = 685
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 102/344 (29%), Positives = 173/344 (50%), Gaps = 45/344 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDR---RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSM 266
N++I +L+ ++++ D R Y K I + P +I+S ++ + + G+G+
Sbjct: 340 NQDIIHKLQELMELHKSKASDDDHWRVIGYAKCIRALRNYPRRIKSLNEARAIRGVGEKT 399
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQ---KLYEKGHRTLDDLK 323
I EI+ TG L ++E +E+ E + ++F ++G+G + Q Y G RTLDD+K
Sbjct: 400 ALKIMEIIKTGDLRRIE-YERTEDIEATTIFQGIYGVGMSCRQIALMWYANGCRTLDDIK 458
Query: 324 NEDS---LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRG 380
++ Q +G++++DDI R+PR E +Q+ L+++ + P + I GS+RRG
Sbjct: 459 ARKGGIKVSSVQDIGIQFYDDINARMPRAEAQQIFTLVKQQALALDPRLFIEIMGSFRRG 518
Query: 381 KASCGDLDVVIMHP--DRKSHKGFLSKYVKKLKEMK-------FLREDLI----FST--- 424
KA CGD+D+++ P D K+H G L+ + + L + L EDL FS+
Sbjct: 519 KADCGDIDILLTRPVDDGKTHSGKLNDFTRLLLNLLSSLHAADILTEDLSLPDDFSSLEL 578
Query: 425 ------HSEE-----------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTG 467
H E P + L+ +TG+D+ NR +RL A GY L+ G
Sbjct: 579 SYRGLCHLPEEGSRRRRIDILCVPWERRGAALLYFTGDDIFNRAIRLKANVLGYSLNQRG 638
Query: 468 LFPATYGSGGKQGVRAR--TSLKFDTEKEVFDFLGFPWLEPHER 509
L+ + ++ T + +TE+E+F LG PW EPHER
Sbjct: 639 LYHGVVRDPRDRRIKVCEGTIIASETEEEIFKILGVPWQEPHER 682
>gi|353238336|emb|CCA70286.1| related to DNA-directed DNA polymerase lambda [Piriformospora
indica DSM 11827]
Length = 545
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 103/344 (29%), Positives = 171/344 (49%), Gaps = 46/344 (13%)
Query: 210 NKNITEIFGKLINIYRAL-GEDR--RSFSYYK---------------AIPVIEKLPFKIE 251
N+++ + +L N YR G+D R ++Y K AI I +IE
Sbjct: 200 NQDVVDKLRELANTYRNRPGDDYHWRVYAYSKGDYLKMLTCNLTRSVAIASIRNCKHRIE 259
Query: 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 311
S ++ G+ G+G + I E++ TG L ++ +E+DE+ + +F ++G+G A
Sbjct: 260 SLEEALGIHGVGVKTAEKIMEVIRTGNLKRIR-YEQDERTVIVGIFRGIYGVGTTVAYDW 318
Query: 312 YEKGHRTLDDLKNED---SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE 368
Y +G RTL+D+K LT +Q +G+KY++D+ +R+PR E + + + + +
Sbjct: 319 YSRGLRTLEDVKQRRFGIKLTAAQDIGVKYYEDLASRMPREEAKDIFDQIVTHAHSIDSK 378
Query: 369 VIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDL-------- 420
+ + GSYRRG+ +CGD+D++I + + L + +KKL E K L DL
Sbjct: 379 LSVEIMGSYRRGEETCGDIDILITRNPEDALE-VLPRLLKKLHEAKILVADLGGGDVDDL 437
Query: 421 -------IFSTHSEEVYPRDIYAF-------GLIAWTGNDVLNRRLRLLAESKGYRLDDT 466
+ ++V DI LI +TG+D+ NR +RLLA KG L+
Sbjct: 438 EAKYMGLCRRSPRDKVRRIDILTIPYSQWPGALIYFTGDDIFNRSMRLLANKKGMSLNQR 497
Query: 467 GLFPATY-GSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
GL+ +Q A T L TE+ +F++LG PW EPH+R
Sbjct: 498 GLWTGVVRDHRTRQKTAAGTLLNLPTERAIFEYLGVPWQEPHQR 541
>gi|119570147|gb|EAW49762.1| polymerase (DNA directed), lambda, isoform CRA_f [Homo sapiens]
Length = 188
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 109/163 (66%), Gaps = 2/163 (1%)
Query: 259 LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRT 318
+PGIGK M + I EI+ +G L KL+H E V + LF +WG G TAQ Y++G R+
Sbjct: 27 IPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRS 84
Query: 319 LDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYR 378
L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA + ++ + GSYR
Sbjct: 85 LEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYR 144
Query: 379 RGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLI 421
RGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+
Sbjct: 145 RGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLV 187
>gi|20067697|emb|CAD29090.1| chimeric DNA-directed DNA polymerase bf4-17 [synthetic construct]
Length = 319
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 107/318 (33%), Positives = 173/318 (54%), Gaps = 26/318 (8%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ PE I GS RR + D
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATV-GSLRREEKMLND 189
Query: 387 LDVVIMHPDRKSHKGFLSKYVKKLK------EMKFLREDLIFSTHSEEVYPR---DIY-- 435
+D++I+ P++K K L + + E KF+ + S + E YP DI
Sbjct: 190 VDLLIIVPEKKLLKHVLPNIRRFITDTLSKGETKFMGVCQLPSENDENEYPHRRIDIRLA 249
Query: 436 ---AFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTE 492
+ + +TG R+R + G+ +++ + P G GV A L D+E
Sbjct: 250 EEKPYAIFHFTGPVSYLIRIR---AALGFTINEYTIRPL-----GVTGV-AGEPLPVDSE 300
Query: 493 KEVFDFLGFPWLEPHERN 510
+++FD++ + + EP +R+
Sbjct: 301 QDIFDYIQWRYREPKDRS 318
>gi|385721243|gb|AFI72772.1| mutant DNA polymerase beta, partial [Homo sapiens]
Length = 238
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 116/188 (61%), Gaps = 2/188 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHP 394
+DV++ HP
Sbjct: 191 MDVLLTHP 198
>gi|296815906|ref|XP_002848290.1| DNA polymerase lambda [Arthroderma otae CBS 113480]
gi|238841315|gb|EEQ30977.1| DNA polymerase lambda [Arthroderma otae CBS 113480]
Length = 659
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 95/324 (29%), Positives = 157/324 (48%), Gaps = 24/324 (7%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N E+ +++N Y + R +Y +AI + + K+ + Q + GIG+ +
Sbjct: 334 NSRTIEVLQQMLNYYERTADQWRCLAYRRAISALRREKDKVVTKSQALKIRGIGERLAVK 393
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EIV T +L +LE + +S F +++G+G A K +G+++LD+LK LT
Sbjct: 394 IEEIVWTNRLRRLEQANMEPNDALLSQFLKIYGVGYQQASKWIAQGYKSLDELKGGAHLT 453
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+Q++G++ +DD + RIPR EVE ++++ V ++ GGSYRRG A GD+D+
Sbjct: 454 TNQKIGIERYDDFQKRIPREEVEAHGAIVRETVLAVDSSYTVIIGGSYRRGAADSGDIDL 513
Query: 390 VIMHPD---RKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE------------------ 428
++ ++ + + V +L + FL+ L S+ +
Sbjct: 514 ILTKEGVSLQEINSQITTTVVPQLFKRGFLKASLAVSSRMDGSKWHGASALPGNPVWRRI 573
Query: 429 ---VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRART 485
P D LI +TGND+ NR LRLLA KG L+ GLF G+ + A
Sbjct: 574 DLLFVPGDELGAALIYFTGNDIFNRSLRLLAGKKGMCLNQRGLFCDVIRGPGRVKLNAGH 633
Query: 486 SLKFDTEKEVFDFLGFPWLEPHER 509
L+ EK +F+ L PW P R
Sbjct: 634 LLESRDEKRIFELLAVPWRPPEHR 657
>gi|156370197|ref|XP_001628358.1| predicted protein [Nematostella vectensis]
gi|156215332|gb|EDO36295.1| predicted protein [Nematostella vectensis]
Length = 336
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 109/339 (32%), Positives = 165/339 (48%), Gaps = 43/339 (12%)
Query: 207 PDLNKN------ITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLP 260
PD N N +TE+ N+ R + + +Y KA V+ K KI+ + + LP
Sbjct: 7 PDQNPNSEFCDFLTELADYEKNVTRQI---HKYNAYRKAAAVLAKHSTKIKDGAEARKLP 63
Query: 261 GIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLD 320
GIG + I E + TGKL KLE KDE V GIGPA A+KL E G +L+
Sbjct: 64 GIGDKIGKKIDEFIKTGKLEKLEKIRKDEGTSITKELTRVSGIGPAAAKKLIEDGVSSLE 123
Query: 321 DLKN-EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRR 379
DLK L H Q++GLKY D+ +TRIPR E+ ++ ++ ++ + GS+RR
Sbjct: 124 DLKRVRGRLNHHQQIGLKYVDEFETRIPREEMIKLRDIVLVHVKKQDKNLTATVCGSFRR 183
Query: 380 GKASCGDLDVVIMHPDRKS------HKGFLSKYVKKLKEMKFLREDL------------- 420
G S GD+D+++ HPD S K L V L++ F+ + L
Sbjct: 184 GATSSGDIDILLSHPDYTSSSQNYDKKSLLHGLVHCLEKADFVTDTLSLGETKFMGVCIL 243
Query: 421 -----IFSTHSE---EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPAT 472
+ H + P D Y G++ +TG+DV N+++R A KG+ L++ + P
Sbjct: 244 PEERDVRRLHRRIDIRLIPHDQYYCGILYFTGSDVFNKQMRHEALEKGFTLNEYSIRP-- 301
Query: 473 YGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 511
GS G G L +E++VFD +G + P +RN+
Sbjct: 302 LGSTGVPG----EPLPVSSEQDVFDIIGMEYKPPEQRNM 336
>gi|427793003|gb|JAA61953.1| hypothetical protein, partial [Rhipicephalus pulchellus]
Length = 245
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 87/245 (35%), Positives = 136/245 (55%), Gaps = 24/245 (9%)
Query: 289 EKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPR 348
E + +LF ++WG GP+TAQK ++G R+L++L + +L+ Q++GLK+F D ++P
Sbjct: 1 ENLVAQNLFTKIWGAGPSTAQKWVQQGFRSLEELAAKGNLSSQQKIGLKHFHDFLEKMPS 60
Query: 349 HEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVK 408
E + ++KA + P + ++ GSYRRG+A CGD+DV+I HPD KSH+G L K ++
Sbjct: 61 GEAGLIADTVKKAALSIQPALEVIPCGSYRRGRAMCGDVDVLITHPDGKSHEGVLCKILQ 120
Query: 409 KLKEMKFLREDLIF--------------------STHSEE---VYPRDIYAFGLIAWTGN 445
L E FL +DL S H V P++ +A L+A+TG+
Sbjct: 121 ILHESNFLTDDLAVPHEGGSPRKYMGVCRLPGEGSKHRRLDIFVVPQEEFACSLLAFTGS 180
Query: 446 DVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLE 505
NR +RLLA KG L+D GL+ A G++ + L TE+ +F+ LG +
Sbjct: 181 AHFNRSMRLLARRKGMSLNDHGLY-ADVCRTGEEKIGHGKRLPTPTEESIFEHLGLKYRP 239
Query: 506 PHERN 510
P ER+
Sbjct: 240 PEERD 244
>gi|339242947|ref|XP_003377399.1| DNA polymerase lambda [Trichinella spiralis]
gi|316973801|gb|EFV57356.1| DNA polymerase lambda [Trichinella spiralis]
Length = 606
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 89/278 (32%), Positives = 148/278 (53%), Gaps = 23/278 (8%)
Query: 224 YRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLE 283
Y+++ E R+ +Y KAI I++ I S + + LPGIGK + I E+ G++ K+
Sbjct: 132 YKSMNESWRALAYDKAISSIKQCKEPITSKEMLSELPGIGKKIAAKIWELHEEGEIEKVS 191
Query: 284 HFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIK 343
F +EK++ + LF VWG+GP TA+K Y +G RT++D++ +LT + +G KY ++I
Sbjct: 192 EFASNEKIQVLKLFNTVWGVGPRTAEKWYLQGLRTIEDVQRNVALTGQEHIGFKYREEIL 251
Query: 344 TRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFL 403
+IPR EVE++ +++ A ++ + GSYRRG+ CGD+D++I HPD KS+ +
Sbjct: 252 LKIPRPEVEEIAKMVIDAAYKINNNFVCDICGSYRRGEEECGDVDILITHPDGKSYLNIV 311
Query: 404 SKYVKKLKEMKFLREDLI--------------FSTHSEEVYPRDI---------YAFGLI 440
+ V LK+ FL + L + S V+ R I YA L+
Sbjct: 312 YQLVTVLKDSGFLTDSLTDINWNSSKYMGVCQLKSGSNLVFHRRIDIIAVPPAEYATALL 371
Query: 441 AWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGK 478
TG+ R + A+S +L+ GL+ + G+
Sbjct: 372 YLTGSAEFVRGVYGKAKSMQMKLNQHGLWINVNRANGR 409
>gi|361130658|gb|EHL02408.1| putative DNA polymerase lambda [Glarea lozoyensis 74030]
Length = 653
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 96/329 (29%), Positives = 157/329 (47%), Gaps = 27/329 (8%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N + F +L Y + + R+ SY K + KI D+ + + GIG S+
Sbjct: 324 NDDCINAFLELAAFYERIRDTFRNMSYRKGATALRSQTRKITDYDEAREIFGIGHSLATK 383
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I E G+L+KLE+ + D + + F +++G+G + A K ++GH+TL+DL LT
Sbjct: 384 IVEFHRRGRLAKLEYTKLDGRDSIVQKFMKIYGVGASQADKWVDQGHKTLEDLVANVPLT 443
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+Q++G+ +++D RIPR E+ + ++++A ++ P+V GGSYRRG + GD+D
Sbjct: 444 ENQKIGIAHYEDFNIRIPREEMHALGDIVKQAVAKIDPKVEATMGGSYRRGAKTSGDIDF 503
Query: 390 VIMHPDRKSH---KGFLSKYVKKLKEMKFLREDLIFSTHSEE------------------ 428
++ P S FL V L+ FL L ++
Sbjct: 504 MLTKPGTTSTLELLPFLHSLVTYLQNTGFLVAALAVPSYRSADAGSKWHGACKLPDNPIW 563
Query: 429 ------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVR 482
+ P + LI +TG+D+ NR LRLLA RL+ GL+ G+ +
Sbjct: 564 RRIDLLLVPASEWGAALIYFTGDDIFNRSLRLLASKYDMRLNQRGLYEHCMRGKGRVKLT 623
Query: 483 ARTSLKFDTEKEVFDFLGFPWLEPHERNL 511
T +K E+ +F+ LG PW P ER L
Sbjct: 624 EGTLIKGLDERGIFERLGVPWRPPEERIL 652
>gi|20067695|emb|CAD29089.1| chimeric DNA-directed DNA polymerase bf4-16 [synthetic construct]
Length = 334
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 107/332 (32%), Positives = 177/332 (53%), Gaps = 39/332 (11%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQ---MERLLQKAGEEVLPEVI------ILCGGSY 377
L H QR+GLKYF+D + RIPR ++ + L + E ++I I+ GS+
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPRELIQGKKIVNHLRSRLAFEYNGQLIKILSKNIVAVGSF 190
Query: 378 RRGKASCGDLDVVIMHPDRKSHKG----FLSKYVKKL--KEMKFL------REDLIFSTH 425
RRG S GD+DV++ HP+ S L + V++L K + F R+ ++F
Sbjct: 191 RRGAESSGDMDVLLTHPNFTSESSKQPKLLHRVVEQLRIKGLSFSVKVCGERKCVLFIEW 250
Query: 426 SEEVYPRDIYA-------FGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGK 478
++ Y D++ + + +TG R+R + G+ +++ + P G
Sbjct: 251 EKKTYQLDLFTALAEEKPYAIFHFTGPVSYLIRIR---AALGFTINEYTIRPL-----GV 302
Query: 479 QGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
GV A L D+E+++FD++ + + EP +R+
Sbjct: 303 TGV-AGEPLPVDSEQDIFDYIQWRYREPKDRS 333
>gi|145524878|ref|XP_001448261.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124415805|emb|CAK80864.1| unnamed protein product [Paramecium tetraurelia]
Length = 608
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 99/298 (33%), Positives = 157/298 (52%), Gaps = 28/298 (9%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 268
N I E KL+ IY + R +Y KAI I+ L F I S++ VK +P IG+ ++
Sbjct: 289 FNNQIIEELEKLLKIYTNEKDKGRCIAYRKAIGFIKSLAFPIRSSEDVKEMPTIGEKIKK 348
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NEDS 327
I EI+ TG L K++ E +K I+ VWGIGP TA Y KG +TL+DL+ N+
Sbjct: 349 KIVEIIQTGSLLKVQKLEGQDKNIAITQLTRVWGIGPTTAATFYFKGIKTLNDLRQNQHM 408
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEV--LPEVI-ILCGGSYRRGKASC 384
L +Q++ L+ ++++ RIPR E + ++++ +++ +P + GSYRR K SC
Sbjct: 409 LNKNQQVCLQLVEELEQRIPRDEATIIYEIVKRELDDLSGVPGLYKATACGSYRREKESC 468
Query: 385 GDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE----------------- 427
GD+D++I D K +GFL +++L E K L L E
Sbjct: 469 GDMDILITRCDGKIVEGFLMNLIQRL-EGKLLTHHLTLPKKGEHDNESYMGIGRISNQGI 527
Query: 428 ------EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQ 479
++YP++ Y ++ +TG+D NR +RL A+ G+ L D GL+P G+ K+
Sbjct: 528 HRRIDLKLYPKEQYGCAVLYFTGSDQYNRSMRLWAQKIGFSLSDHGLYPTQRGTHNKK 585
>gi|336390909|dbj|BAK40153.1| DNA polymerase beta [Aurelia sp. 1 sensu Dawson et al. (2005)]
Length = 334
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 101/305 (33%), Positives = 152/305 (49%), Gaps = 32/305 (10%)
Query: 232 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
+S Y KA ++ P KI S + + L GIG + I E + TG L KLE D
Sbjct: 35 KSKVYRKAASILANHPTKITSGAEARKLDGIGDKIGKKIDEFIKTGTLQKLEKIRVDSSA 94
Query: 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHE 350
I+ V GIGPA A+ L + G ++++L KN D L H Q++GLK+F+D + RIPR E
Sbjct: 95 VAINQLTRVSGIGPAAARNLVDDGICSIEELKKNNDKLNHHQKIGLKHFEDFEKRIPRSE 154
Query: 351 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSH---KGF----- 402
+++ + + + E GSYRRG S GD+DV+I HP S KG
Sbjct: 155 MDKHQEFIIDEISKHDKEFTACICGSYRRGAESSGDIDVLITHPTYTSKTKGKGAGKNSK 214
Query: 403 LSKYVKKLKEMKFLREDL---------IFSTHSEEVY--------PRDIYAFGLIAWTGN 445
L K V L + ++ + L + E Y P D Y G++ +TG+
Sbjct: 215 LKKLVDDLTKANYITDTLSLGEAKFMGVCKLPDNESYRRLDLRLIPGDQYYCGVLYFTGS 274
Query: 446 DVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLE 505
D+ N+ +R A KG+ +++ + P GS G G + ++EK+VFD LG ++E
Sbjct: 275 DIFNQTMRQEALDKGFTINEYCIRPV--GSTGAPG----EPIPVESEKDVFDILGKEYVE 328
Query: 506 PHERN 510
P +RN
Sbjct: 329 PTDRN 333
>gi|392578789|gb|EIW71916.1| hypothetical protein TREMEDRAFT_26921 [Tremella mesenterica DSM
1558]
Length = 785
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 90/287 (31%), Positives = 149/287 (51%), Gaps = 29/287 (10%)
Query: 250 IESADQVKGL-PGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATA 308
I S Q + L GIG+ + D I E +T K E++E EK +TIS+F +++G+G + A
Sbjct: 499 ITSGAQARSLLIGIGQGIADRIDEFLTGSK--GREYYENTEKAKTISMFKDIYGVGKSFA 556
Query: 309 QKLYEKGHRTLDDLK-NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
+LY +G RT++DL+ E L+ Q++G++ + D+ +RIPR E +Q+ L++ + ++ P
Sbjct: 557 NELYRRGARTIEDLREKEYGLSKGQKIGVELYSDLISRIPRKECKQLYDLIRSSALDIDP 616
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPDR--KSHKGFLSKYVKKLKEMKFLREDLIFSTH 425
V + GSYRRG GD+D++I D K+HKG + V L++ + ++ +
Sbjct: 617 MVWVEIMGSYRRGGVDSGDVDILITRDDSDGKTHKGLIKSLVNDLRKKGVITHEMSAPSD 676
Query: 426 SEEV----------------------YPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRL 463
+ P D + LI +TGN++ NR LRL A KG+ L
Sbjct: 677 WSALETKWMGVGRVPGGKYRRIDILCIPFDQWGAALIYFTGNEIFNRSLRLYARKKGFSL 736
Query: 464 DDTGLFPATY-GSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ GL+ G G + + TE+++F LG W PH+R
Sbjct: 737 NQRGLYTGVMRGPDGNKITEGEEIVVSKTEEDIFKILGIRWRHPHQR 783
>gi|145350970|ref|XP_001419864.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580096|gb|ABO98157.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 340
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 105/346 (30%), Positives = 173/346 (50%), Gaps = 47/346 (13%)
Query: 206 PPDLNKNITEIFGKLINIYR-ALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 264
P + N + ++ ++ I + AL E ++ Y A + L F+++S DQV +P + K
Sbjct: 2 PLECNSKVADLLSEMAKINQDALREVYKAKQYAAAASALRSLNFEVQSIDQVDVIPMLKK 61
Query: 265 ---SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDD 321
++ ++QEI+TTGKL+ L+ + V++ + G+GP TA+KL++KG+++L D
Sbjct: 62 RDGKIRKYVQEILTTGKLTALQSLRQRPDVKSCVELSGIHGVGPVTARKLFDKGYKSLAD 121
Query: 322 LKN----EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP-EVIILCGGS 376
L+ D+LT +Q +GLKY+++ K RIPR EV + +++A + EV C GS
Sbjct: 122 LRAPGVPRDTLTPTQWIGLKYYEEFKQRIPREEVSHIATAVREAANTFMKDEVRCYCVGS 181
Query: 377 YRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLK------EMKFLREDL---------- 420
+RRGKA GD+DV++ D L + L+ L +DL
Sbjct: 182 FRRGKADSGDVDVLVECRDVSLANDLLMHILNDLRAGSPSPRSGILTDDLQVGDVQYMGV 241
Query: 421 ---------------IFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDD 465
+ +VY D + L+ +TG+D NR +RL A+ KGY L D
Sbjct: 242 AALQQPLRADDQAPPVHRRIDIKVYETDAFPTALLYFTGSDKFNRSMRLWAKRKGYALQD 301
Query: 466 TGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 511
GLF + + VR R EK++FD L ++ P +RN+
Sbjct: 302 KGLFRDRSEAAASR-VRVR------DEKDIFDALQLDYVAPKDRNV 340
>gi|406604333|emb|CCH44175.1| DNA nucleotidylexotransferase [Wickerhamomyces ciferrii]
Length = 530
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 102/319 (31%), Positives = 154/319 (48%), Gaps = 37/319 (11%)
Query: 228 GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEK 287
GE ++ +Y AI + I A++ L GIG S+ I+EIV T LS L +
Sbjct: 174 GEHFKAKAYKNAINALNNTGDFISDANEALRLKGIGVSVAQKIEEIVKTNTLSSLNEIKS 233
Query: 288 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIP 347
D++ + LF + G+GP +A+K Y G RTL+D+ + LT +Q LGLKY+D+ RIP
Sbjct: 234 DKEHQVSKLFMGIHGVGPVSAKKWYNDGLRTLEDVSQKPDLTSNQTLGLKYYDEWLERIP 293
Query: 348 RHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP--DRKSHKGFLSK 405
R E + ++ P V GGSYRRG +CGD+D +I P D + K L K
Sbjct: 294 RDECTLHNEFMSDLVSQIDPLVQFTIGGSYRRGSPTCGDVDFIITKPNADNEEMKEILEK 353
Query: 406 YVKKLKEMKFLREDLIFSTHSEE-----VYPRDIYA------------------FGLIAW 442
+ K++++ +L+ L HS + P + YA F ++ W
Sbjct: 354 ILVKIEQVGYLKCSLQ-KKHSTKFLSGCALPPN-YASRLPEYSEGKWGKCRRIDFLMVPW 411
Query: 443 ----------TGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTE 492
TGND NR +RL A G L+++GLF GK ++ +E
Sbjct: 412 KERGAAFIYFTGNDYFNRLIRLKAVKNGLVLNESGLFKRIKYVQGKNVEDKTMLIESFSE 471
Query: 493 KEVFDFLGFPWLEPHERNL 511
K++F LGF ++ P +RN
Sbjct: 472 KKIFKLLGFKYVPPEQRNF 490
>gi|242014662|ref|XP_002428004.1| DNA polymerase beta, putative [Pediculus humanus corporis]
gi|212512523|gb|EEB15266.1| DNA polymerase beta, putative [Pediculus humanus corporis]
Length = 440
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 102/299 (34%), Positives = 155/299 (51%), Gaps = 39/299 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
NK + E KL N+Y + R +SY +AI I +I++ + +PGIG+ +
Sbjct: 138 NKIVIEELEKLENVYDVRNDTSRCYSYKRAISAISLYDKEIKTYQEACSIPGIGQKIASE 197
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I E++ +GK++KLE+ DEK + + +F VWG GP TA+ Y +G R L DL+ LT
Sbjct: 198 IMEVLESGKINKLENLLDDEKTKILKMFCNVWGAGPHTAEMWYSQGMRNLKDLR-RGKLT 256
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKA-----GEEVLPEVIILCGGSYRRGKASC 384
Q +GLK + D+ +IPR EV ++ ++++K G+E V ++ GSYRRGK +C
Sbjct: 257 RRQEIGLKLYRDLSEKIPRQEVIKIFQIIEKCVTEMNGDESSLGVELV--GSYRRGKENC 314
Query: 385 GDLDVVIMH----PDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHS-------------- 426
GD+DV+I++ D K L K LK FL +DL+ S
Sbjct: 315 GDVDVMIVNHDDDDDDKRPGEILKKLWNLLKIQGFLTDDLVNFIQSDNTDKENRKYYGIF 374
Query: 427 -----EEVYPR-DI-------YAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPAT 472
EE + R DI YA GL +TG+ + NR +++LA K L + GL+ T
Sbjct: 375 KLKGDEEKHRRLDIFVVSGREYASGLFHYTGSAMFNRTVKILARKKNMILTERGLYAGT 433
>gi|67521542|ref|XP_658835.1| hypothetical protein AN1231.2 [Aspergillus nidulans FGSC A4]
gi|40746668|gb|EAA65824.1| hypothetical protein AN1231.2 [Aspergillus nidulans FGSC A4]
Length = 625
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 148/289 (51%), Gaps = 27/289 (9%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 264
NP N E+ ++++ Y + R+ +Y KAI + K+ S + +PGIG+
Sbjct: 315 NP---NARTIEVLQQMLDYYTRTADHWRTLAYRKAISALRSQSKKVLSRSEAIRIPGIGE 371
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN 324
+ D I+EIV T +L +L++ + R + + V+G G A + +G+R+L+DL+
Sbjct: 372 RLADKIEEIVLTNRLRRLDNTSNTVEDRLLQTYLGVYGAGITVASRWIAQGYRSLEDLRT 431
Query: 325 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 384
+ SLT +QR+GL ++ D +IPR EV+ +++ P++ ++ GGSYRRG A+
Sbjct: 432 KASLTQAQRIGLDHYFDFSQQIPRTEVQAHGNFVRRVVRMESPDMQVIIGGSYRRGAATS 491
Query: 385 GDLDVVIMHPD---RKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE-------------E 428
GD+D++I PD + L V KL + FL+ L + E +
Sbjct: 492 GDIDLIITRPDATIEEIRTLMLDNVVPKLFQQGFLQASLAATCRGEGSKWHGASKLPDGQ 551
Query: 429 VYPRDIYAF--------GLIAWTGNDVLNRRLRLLAESKGYRLDDTGLF 469
++ R F LI +TGND+ NR +RLLA K RL+ GL+
Sbjct: 552 LWRRIDLLFVPGAELGAALIYFTGNDIFNRSIRLLASKKLMRLNQRGLY 600
>gi|15825881|pdb|1JN3|A Chain A, Fidelity Properties And Structure Of M282l Mutator Mutant
Of Dna Polymerase: Subtle Structural Changes Influence
The Mechanism Of Nucleotide Discrimination
Length = 251
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/256 (34%), Positives = 146/256 (57%), Gaps = 33/256 (12%)
Query: 282 LEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFD 340
LE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED L H QR+GLKYF+
Sbjct: 1 LEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNEDKLNHHQRIGLKYFE 60
Query: 341 DIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHK 400
D + RIPR E+ QM+ ++ +++ PE I GS+RRG S GD+DV++ HP+ S
Sbjct: 61 DFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPNFTSES 120
Query: 401 G----FLSKYVKKLKEMKFLREDL------------IFSTHSEEVY----------PRDI 434
L + V++L++++F+ + L + S + E Y P+D
Sbjct: 121 SKQPKLLHRVVEQLQKVRFITDTLSKGETKFMGVCQLPSENDENEYPHRRIDIRLIPKDQ 180
Query: 435 YAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKE 494
Y G++ +TG+D+ N+ LR A KG+ +++ + P G GV A L D+E++
Sbjct: 181 YYCGVLYFTGSDIFNKNLRAHALEKGFTINEYTIRPL-----GVTGV-AGEPLPVDSEQD 234
Query: 495 VFDFLGFPWLEPHERN 510
+FD++ + + EP +R+
Sbjct: 235 IFDYIQWRYREPKDRS 250
>gi|336472599|gb|EGO60759.1| hypothetical protein NEUTE1DRAFT_76176 [Neurospora tetrasperma FGSC
2508]
gi|350294166|gb|EGZ75251.1| Nucleotidyltransferase [Neurospora tetrasperma FGSC 2509]
Length = 602
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 109/397 (27%), Positives = 180/397 (45%), Gaps = 36/397 (9%)
Query: 65 DLEALLQQVSKQHL--ARFKGSVIRYQWLEDSLRLGEKVS-ED--LYR--------IKLD 111
D LL Q ++ L A V++ W +SL+ G + ED LYR KL
Sbjct: 100 DFHPLLTQSTQSTLKAAPTTVKVVKLAWFTESLKAGTVLPIEDYTLYRGRKQQSKPAKLQ 159
Query: 112 PEGENIADRVLSQIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPN 171
A ++ + + SS G +S +HF ++ +
Sbjct: 160 QASPAKAANIIKRALADPKPSSHGSRPGSSHSTTSHGRRDHFITKAPALLHMTTSEHEVE 219
Query: 172 SPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDR 231
P L T + +P +PP N+ E K+ LG+
Sbjct: 220 LPPIPAYLHTTYACQRPAPT-------------HPP--NEPFIEELTKIRTARTLLGDKI 264
Query: 232 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
+Y AI + P+ ++SA +V LPG G + QE G+L + + E D ++
Sbjct: 265 GVRAYSSAIAALISYPYLLQSAFEVARLPGCGLKIAQLYQEFREQGELQEAKEDESDPRL 324
Query: 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRH 349
+ LF E+WG+ TA++ Y KG R LDD+ D+LT Q++G+KY+D+ + +IPR
Sbjct: 325 AVLKLFHEIWGVAETTAREFYNKGWRDLDDIIEYGWDTLTRVQQIGVKYYDEFQQKIPRA 384
Query: 350 EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKK 409
EVE + ++ + ++ P ++ G YRRGK + GD+DVV+ HPD+ + +GF+ + V
Sbjct: 385 EVESIANIILEHANKIHPGFQMVIVGGYRRGKLASGDVDVVLSHPDKAATRGFVEQIVVA 444
Query: 410 LKEMKFLREDLIFSTHSEEVYPRDIYAFGLIAWTGND 446
L++ ++ LI ST + E +AW GN+
Sbjct: 445 LEQSNYITHTLILSTANTE------RGQEPVAWKGNE 475
>gi|58865402|ref|NP_001011912.1| DNA polymerase mu [Rattus norvegicus]
gi|51859148|gb|AAH81868.1| Polymerase (DNA directed), mu [Rattus norvegicus]
gi|149047644|gb|EDM00314.1| rCG35832 [Rattus norvegicus]
Length = 495
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 93/334 (27%), Positives = 157/334 (47%), Gaps = 61/334 (18%)
Query: 228 GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEK 287
G++ R ++Y+A +++ LP+ + S Q+ GLP G+ IQE++ G ++E
Sbjct: 171 GKEGRFLTFYRAASMLKSLPYPVTSLSQLHGLPYFGEHSFRVIQELLEHGTCEEVEQIRC 230
Query: 288 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-LTHSQRLGLKYFDDIKTRI 346
E+ +T+ LF ++G+G TA + Y++G RTLD+L+ + LT Q+ GL+Y+ D+ T +
Sbjct: 231 SERHQTMKLFTHIFGVGVKTASRWYQEGLRTLDELREQPQRLTQQQKAGLQYYQDLSTPV 290
Query: 347 PRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY 406
R E E +++L++ A E+LP + G +RRGK D+D +I HP+ G L +
Sbjct: 291 SRAEAEALQQLVEAAMREILPGATVTLTGGFRRGKLQGHDVDFLITHPEEGQEVGLLPRV 350
Query: 407 VKKLKEM------KFLREDLIFSTH----------------------SEE---------- 428
++ L+ ++ R L S H S++
Sbjct: 351 MRCLQSQGLVLYHQYHRSHLADSAHILRQRSTMDAFERSFCILRLPQSQQAALEGPLHPC 410
Query: 429 -----------VYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSG 476
V P + F L+ WTG+ R LR + + KG L+ GLF
Sbjct: 411 PTWKAVRVDLVVTPNSQFPFALLGWTGSQFFERELRRFSRQEKGLCLNSHGLF------- 463
Query: 477 GKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+T +E++VF FLG +L P +RN
Sbjct: 464 ---DPERKTFFHATSEEDVFRFLGLKYLPPEQRN 494
>gi|157833739|pdb|1RPL|A Chain A, 2.3 Angstroms Crystal Structure Of The Catalytic Domain Of
Dna Polymerase Beta
Length = 251
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 87/256 (33%), Positives = 146/256 (57%), Gaps = 33/256 (12%)
Query: 282 LEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFD 340
LE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED L H QR+GLKYF+
Sbjct: 1 LEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNEDKLNHHQRIGLKYFE 60
Query: 341 DIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHK 400
D + RIPR E+ QM+ ++ +++ PE I GS+RRG S GD+DV++ HP+ S
Sbjct: 61 DFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPNFTSES 120
Query: 401 G----FLSKYVKKLKEMKFLREDL------------IFSTHSEEVY----------PRDI 434
L + V++L++++F+ + L + S + E Y P+D
Sbjct: 121 SKQPKLLHRVVEQLQKVRFITDTLSKGETKFMGVCQLPSENDENEYPHRRIDIRLIPKDQ 180
Query: 435 YAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKE 494
Y G++ +TG+D+ N+ +R A KG+ +++ + P G GV A L D+E++
Sbjct: 181 YYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTGV-AGEPLPVDSEQD 234
Query: 495 VFDFLGFPWLEPHERN 510
+FD++ + + EP +R+
Sbjct: 235 IFDYIQWRYREPKDRS 250
>gi|342320802|gb|EGU12741.1| DNA polymerase lambda [Rhodotorula glutinis ATCC 204091]
Length = 1020
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 97/315 (30%), Positives = 154/315 (48%), Gaps = 46/315 (14%)
Query: 232 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
R SY +A + P K+ DQ+ L GIG M + I EI+ TG +L F+ E+
Sbjct: 713 RQRSYKQAANKLRSCPTKVTRFDQLVKLRGIGDKMANKIIEILRTGTHRRLTTFQT-ERE 771
Query: 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRL--GLKYFDDIKTRIPRH 349
+T+ LF ++G+G A A LY+KG R+++ ++ + + ++ L GLKY++D+ RIPR
Sbjct: 772 KTVKLFCGIYGVGQAKAADLYDKGARSVEMIRRDPARFGAELLHVGLKYYEDLLERIPRD 831
Query: 350 EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMH--PDRKSHKGFLSKYV 407
EV ++ ++ ++ P++ + C GSYRRG +CGD+D++I D K+H+G + K
Sbjct: 832 EVTELYGHAKRIAYKIDPKLQVWCMGSYRRGAETCGDIDLIITRDPSDGKTHEGAVQKLW 891
Query: 408 KKLKEMKFLREDLIFSTHSEEV------------------------YPRDIYAFGLIAWT 443
K L K +R +L + P D +I +T
Sbjct: 892 KGLVAEKMVRHELTVPEDWRSLDALVHGLIRLPKPGAKMRRIDVLGVPFDEIPAAMIYFT 951
Query: 444 GNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDT---------EKE 494
GND NR +RL A GYRL+ GL+ K R R +K E++
Sbjct: 952 GNDYFNRSIRLKARRHGYRLNQRGLY--------KDVARDRKGIKLTEGVPVPGIKHERD 1003
Query: 495 VFDFLGFPWLEPHER 509
+F L P+ EP +R
Sbjct: 1004 IFRVLKVPYCEPEQR 1018
>gi|409042790|gb|EKM52273.1| hypothetical protein PHACADRAFT_30808 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1125
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 96/302 (31%), Positives = 158/302 (52%), Gaps = 43/302 (14%)
Query: 210 NKNITEIFGKLINIY---RALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSM 266
N++I +IF +L IY +A ++ R+ +Y K I + + P +IES +++ + G GK
Sbjct: 796 NQDIIDIFTQLKEIYEIRKAESDNFRADTYRKVIKSLREYPKRIESREELVQINGAGKKT 855
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL---K 323
+D I EI+ TG+L +L+ FE ++ + LF ++G+G T+ K Y G RTLDD+ K
Sbjct: 856 KDKIMEIIKTGRLRRLQ-FEMTAELDVLRLFQGIYGVGSITSLKWYAAGCRTLDDIHQRK 914
Query: 324 NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKAS 383
L+ +Q LGLKY+DDI +RI R EV ++ + ++ + ++I+ GSYRRGKA
Sbjct: 915 GGIKLSDAQELGLKYYDDINSRISRQEVGEIFQRIKDIAHGIDKKLIVEIMGSYRRGKAD 974
Query: 384 CGDLDVVIMHP--DRKSHKGFLSKYVKKLKEMKFLREDLIFSTH---SEEVY-------- 430
CGD+D++I P D+K HKG + V + + + L ++ +E VY
Sbjct: 975 CGDIDILITRPTDDKKHHKGLAQRMVNLCQMHGIIVDHLSIPSNWWSTELVYHGLCRRDD 1034
Query: 431 ------------PRDIYAFGLIAWTGNDVL-----------NRRLRLLAESKGYRLDDTG 467
P + L+ +TG+D++ NR +R A Y L+ G
Sbjct: 1035 DSPVRRLDFLAVPYEQRGAALLYFTGDDIVSVLLIQLHAQFNRSMRAKANKMDYSLNQRG 1094
Query: 468 LF 469
L+
Sbjct: 1095 LY 1096
>gi|407926589|gb|EKG19556.1| BRCT domain-containing protein [Macrophomina phaseolina MS6]
Length = 749
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 98/333 (29%), Positives = 159/333 (47%), Gaps = 33/333 (9%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N EI ++ N Y ++ RS +Y KA+ ++K +I + DQ LP +G +
Sbjct: 415 NARTIEILTEMGNYYEQTKDEWRSRAYRKAVSTLQKQERRIITKDQALLLPFVGDRLAVK 474
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-EDSL 328
I+EIV T +L +LE+ + + F +++G+G + A+K G RTL DL+ + L
Sbjct: 475 IEEIVWTNRLRRLENARMEPGDEALQNFLKIYGVGLSKARKWVMAGLRTLQDLEEYKIPL 534
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
T +Q++G+ +++D TRIPR EV + +++ A + + P+ GSYRRG + GD+D
Sbjct: 535 TPAQQVGMAHYEDFNTRIPREEVSKHADVVRDALQAIDPKFTATVSGSYRRGAQTSGDID 594
Query: 389 VVIMHPD---RKSHKGFLSKYVKKLKEMKFLREDL---------------------IFST 424
++I P + + V KL FL+ L +
Sbjct: 595 ILISCPGVDLARLQVVVFDELVPKLTATGFLKVALASHTGGDSGSGTKWHGASALPVLDG 654
Query: 425 HSEEVY--------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSG 476
+EV+ P LI +TGND+ NR +RLLA KG RL+ GLF
Sbjct: 655 QGKEVWRRIDLLLVPDSQLGAALIYFTGNDIFNRSIRLLASRKGMRLNQRGLFRDVMRDR 714
Query: 477 GKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
++ V ++ E+ +F+ LG PW P R
Sbjct: 715 RREKVTDGELVEGRDERRIFEILGVPWRPPEHR 747
>gi|403416241|emb|CCM02941.1| predicted protein [Fibroporia radiculosa]
Length = 659
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 124/459 (27%), Positives = 190/459 (41%), Gaps = 144/459 (31%)
Query: 177 ESLTNTLSTASASP----DFSSHHITDPSLLYNP-PDLNKNITEI--------------- 216
+S T +ST + SP S+ HI P+ L P P + NI ++
Sbjct: 217 DSGTKLVSTLTGSPLSEVKVSTRHIEIPAHLLPPSPPIPTNIAKLNYASRYACQRASPLE 276
Query: 217 -----FGKLINIYR---AL-GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
K +++ R AL GE+R + SY +AI +++ P KI S QV+ LP IG +
Sbjct: 277 CPNPGLVKELDVLRRSRALEGEERSALSYARAISIVKAYPRKIRSLQQVEKLPFIGAKIG 336
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL----- 322
++E V +GK+++ + E+ + +SLF ++GIGP TA+KLY G R+LD+L
Sbjct: 337 GMVEEYVLSGKITEAQSILASERFQALSLFATIYGIGPTTARKLYALGLRSLDNLEVYYG 396
Query: 323 ------------KNEDSLTHSQ---------------------------------RLGLK 337
+ E T Q R+ L+
Sbjct: 397 VERDQGPSEEIIEVEKQTTSEQSYRNDKDKGRRRGVGGWGGEKGEGDEGLGESWVRIALE 456
Query: 338 YFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRK 397
+D+ +IPR EVE+M R++ +E+ P + G YRRGK D+D+V HPD
Sbjct: 457 LREDLSIKIPRAEVEEMNRVVMAELDELEPGCVSTIAGGYRRGKPESNDVDIVFTHPDGT 516
Query: 398 SHKGFLSKYVKKLKEMKFL----------------------------------------- 416
KG + V++L E K +
Sbjct: 517 RIKGLCKRLVRRLHERKMVTHVMHLSGFHGHNPLRTNHWDSLEKSLTVFILPSTSHSKGL 576
Query: 417 --REDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK-GYRLDDTGLFPATY 473
R DLIF+ P +IY +I W+G+ + R LR A+ K + D +G+
Sbjct: 577 RRRLDLIFA-------PPEIYWTAVIGWSGSIMFERDLRQWAKDKVAMKFDSSGI----- 624
Query: 474 GSGGKQGVRARTSLKF--DTEKEVFDFLGFPWLEPHERN 510
R S +F TEKE F+ LG W++P RN
Sbjct: 625 -------TRRYDSKQFFPKTEKEAFNLLGLEWIDPTLRN 656
>gi|254571841|ref|XP_002493030.1| DNA polymerase IV [Komagataella pastoris GS115]
gi|238032828|emb|CAY70851.1| DNA polymerase IV [Komagataella pastoris GS115]
gi|328352960|emb|CCA39358.1| DNA polymerase IV [Komagataella pastoris CBS 7435]
Length = 563
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 131/467 (28%), Positives = 214/467 (45%), Gaps = 58/467 (12%)
Query: 85 VIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSHRKKIK 144
V+R W+ DSL EK KL P + + S + G + ES +K
Sbjct: 104 VLRLAWVTDSLE--EK--------KLLP----YSKYLFSFPEQKGKVKRERESESLSDVK 149
Query: 145 SSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLY 204
E + + +S D E + + E SP E + + S S S+ +D L
Sbjct: 150 EEKEPSKKRKRKS-VDEEHSLIFEKLASPPKIEDIKKKVLADSESLRASTPE-SDEEDLK 207
Query: 205 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 264
N + N+ I F ++ + G +S SY +AI I+ P +IE + +P IGK
Sbjct: 208 NMSN-NELIIHYFSQMAKERKVEGLQFKSLSYLRAINAIKNAPKEIECREDALSIPKIGK 266
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 323
S+ DH EI+ T K +L+ ++ + + ++ G+G ++K + G R++ D+
Sbjct: 267 SLADHCVEIIETRKFGQLKRQQESTEAHVMKELQKIHGVGAVISEKWFNHYGVRSIPDIF 326
Query: 324 N---EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRG 380
E T + +LGL Y+ D +IPR EV + G+++ P+ I+ GSYRR
Sbjct: 327 EKVPESEFTDAIKLGLYYYYDWNQKIPREEVTAHSEFVSDVGKKIDPKFIVQTVGSYRRE 386
Query: 381 KASCGDLDVVIMHPDRKSH---KGFLSKYVKKLKEMKFLREDLIFSTH------------ 425
+CGD+D IM D FL+ VK+L + +L+ L F H
Sbjct: 387 TKTCGDVDFFIMKEDCNDETKLSQFLTTLVKELFKSGYLKCSL-FPAHDQLLKFLTGGQL 445
Query: 426 SEEVYPRDI---------YAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPA---TY 473
+++ + R + A LI +TGND+LNR +R LA +KG RL++ GLF
Sbjct: 446 TDKKFCRRVDFLAVKWKYRAGALIYFTGNDILNRYMRTLANNKGLRLNNEGLFKPKRRVI 505
Query: 474 GSGGKQGVRAR---------TSLKFDTEKEVFDFLGFPWLEPHERNL 511
K G+R T ++ + E+++F+ LG +LEP +RN+
Sbjct: 506 DEANKMGIRLSKMHFKEDDWTLVEGEDEEKIFNLLGLRYLEPKDRNI 552
>gi|302897331|ref|XP_003047544.1| hypothetical protein NECHADRAFT_50658 [Nectria haematococca mpVI
77-13-4]
gi|256728475|gb|EEU41831.1| hypothetical protein NECHADRAFT_50658 [Nectria haematococca mpVI
77-13-4]
Length = 587
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 112/478 (23%), Positives = 209/478 (43%), Gaps = 59/478 (12%)
Query: 85 VIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSHRKKIK 144
V++ WL+DS G + + Y + +G+ ++ + + SS R +
Sbjct: 113 VVKLAWLKDSFEQGTVLPFENYLLY---QGKKVSPKDATPTSATVQHSSTASILERARQD 169
Query: 145 SSTEDVEHF-QAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDF--SSHHITDPS 201
+ + + K T+A S + ++ + T PDF + + P+
Sbjct: 170 QQAQPASNSPRGRPKHRSHTSATSADHVPSLLHQTTSEHDITLPPVPDFLETPYSCQRPT 229
Query: 202 LLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPG 261
+ P N+ E ++ I + G++ +Y +I + P K+++ +V+ LPG
Sbjct: 230 PMKPP---NEAFVEALIEVRTIRKLQGDEVGVRAYSTSIATVSAYPHKLQNTHEVERLPG 286
Query: 262 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDD 321
G + + +E TG+L+++ + D V + LF +WG+G TA++ Y KG R L+D
Sbjct: 287 CGAKIAELWREWNETGELTEVRKADADPMVSVLRLFYNIWGVGDTTAREFYRKGWRDLND 346
Query: 322 LKN--EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRR 379
L + DSL+ SQ++G+K++D+ +IPR EVE + ++ K E+ ++ G YRR
Sbjct: 347 LVDFTWDSLSRSQQVGVKFYDEFLLKIPRDEVESIGAVILKHAREIDAGFEMIIAGGYRR 406
Query: 380 GKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE----------- 428
GK+ CGD+DV++ H D ++ ++ L++ +F+ +L+ S H+ E
Sbjct: 407 GKSQCGDIDVILSHRDENKTLRVVNTLIQSLEQARFITHNLVMSLHNSERGQRPVSWKGE 466
Query: 429 ---------------------------------VYPRDIYAFGLIAWTGNDVLNRRLRLL 455
+ P L+ W+G R LR
Sbjct: 467 GASGSGFDTLDKAMVVWQDPSQEDAPHRRVDIIISPWKTVGCALLGWSGGTTFQRDLRRY 526
Query: 456 AES-KGYRLDDTGLFPATYGSGG--KQGVRARTSLKFDT-EKEVFDFLGFPWLEPHER 509
+ KG + D +G+ + G ++G + +T E+ VF+ LG W P ER
Sbjct: 527 CKKVKGLKFDSSGVRRRSDGMWVDLEKGPAGDGAPDMETAERRVFEGLGLTWRPPEER 584
>gi|311977701|ref|YP_003986821.1| probable DNA polymerase family X [Acanthamoeba polyphaga mimivirus]
gi|81990391|sp|Q7T6Y4.2|DPOLX_MIMIV RecName: Full=Probable DNA polymerase family X
gi|55664862|gb|AAQ09576.2| DNA polymerase family X [Acanthamoeba polyphaga mimivirus]
gi|308204336|gb|ADO18137.1| probable DNA polymerase family X [Acanthamoeba polyphaga mimivirus]
gi|339061254|gb|AEJ34558.1| DNA polymerase family X [Acanthamoeba polyphaga mimivirus]
gi|351737472|gb|AEQ60507.1| DNA polymerase family X [Acanthamoeba castellanii mamavirus]
gi|398257158|gb|EJN40766.1| DNA polymerase family X [Acanthamoeba polyphaga lentillevirus]
Length = 354
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 103/314 (32%), Positives = 165/314 (52%), Gaps = 44/314 (14%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKL-EHF--EKDEKV 291
S KA+ +++ L F+I A+ VKG+PGIG I+EI+ TGKL L + F EK +++
Sbjct: 41 SIKKALSILKNLDFEITDANDVKGIPGIGAGTIKRIKEILETGKLHDLKDKFSPEKQKQI 100
Query: 292 RTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKN-----EDSLTHSQRLGLKYFDDIKTR 345
I V GIG +TA+KL + G R++DDLK + ++ S LGLKY+ ++
Sbjct: 101 EGIQELENVIGIGSSTAKKLISQYGIRSVDDLKKAIETGKVKVSTSIMLGLKYYGIVQRD 160
Query: 346 IPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFL-- 403
IPR E+ +E+LL K ++ P++ I+ GSYRRGK + GD+DV++ HP K+ K L
Sbjct: 161 IPRKEITAIEKLLSKEAHKIDPDLEIIICGSYRRGKKTSGDIDVLMYHPKMKTSKEMLHP 220
Query: 404 ---------SKYVKKLKEMKFLREDLIFSTHSEEV-----------------YPRDIYAF 437
+ Y+ +L E FL +D+ F+ + + + P + A
Sbjct: 221 EKFDLEPYFNLYIDRLTEKGFLIDDITFNPNKKYMGFCKYKLNPVRRIDIRFIPYNSLAP 280
Query: 438 GLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFD 497
++ +TG LN ++R A+ + L++ GLF K G A+ L +E ++F
Sbjct: 281 AMLYFTGPMELNTKMRSAAKKRKMILNEYGLFKT-----DKNG--AQIPLDTKSEADIFH 333
Query: 498 FLGFPWLEPHERNL 511
LG +L P +R L
Sbjct: 334 ALGMDYLTPQQREL 347
>gi|345306445|ref|XP_001509890.2| PREDICTED: DNA polymerase beta-like [Ornithorhynchus anatinus]
Length = 386
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 125/204 (61%), Gaps = 8/204 (3%)
Query: 222 NIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSK 281
N+ RA+ + +Y KA VI K P KI+S + K L G+G + + I E ++TGKL K
Sbjct: 167 NVNRAI---HKYNAYRKAASVIAKYPNKIKSGAEAKKLDGVGAKIAEKIDEFLSTGKLRK 223
Query: 282 LEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFD 340
LE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KN+ L H QR+GLKYF+
Sbjct: 224 LEKIRQDDTGSSINFLTRVSGIGPSAARKLVDEGIKTLEDLRKNDHKLNHHQRIGLKYFE 283
Query: 341 DIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHK 400
D + RIPR E+ QM+ ++ +++ P+ I GS+RRG S GD+D+++ HP S
Sbjct: 284 DFEKRIPREEMLQMQDIVLNEVKKLDPKYIATVCGSFRRGAESSGDMDILLTHPSFTSES 343
Query: 401 G----FLSKYVKKLKEMKFLREDL 420
L + V++L+++ F+ + L
Sbjct: 344 AKQPKLLHQVVEQLQKVHFITDTL 367
>gi|298712875|emb|CBJ33392.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 782
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 134/577 (23%), Positives = 240/577 (41%), Gaps = 86/577 (14%)
Query: 15 SNGIFAGMRVFLVEKG-VQNRRLQIWRQKLVQMGATVEEKLSK-KVTHVLAM-------- 64
++G F+G+ + +V +G V N + ++ G V + TH++A
Sbjct: 57 ASGPFSGLSLCVVSQGSVTNNTVGTLTREFRDGGGQVSTHYTPGDTTHIVADASLAASWE 116
Query: 65 ----------DLEALLQQVSKQHLARFKGSV--IRYQWLEDSLRLGEKVSEDLYRIKLDP 112
D E ++ + R V + +W+ + LR E V+ + YR+ P
Sbjct: 117 KLDDYFSGWDDFEDVVDGAATAGRGRMPDGVPVVSSEWMSECLRRSEVVTAEAYRL-TPP 175
Query: 113 EGENIADRVLSQIQ---------------GNGNTSSDGESSHRKKIKSSTEDVEHFQAES 157
A ++ Q ++S+ ++ +K+I +S +
Sbjct: 176 LHHCAAPATVAPKQQQRSSTATTETNAAAEGCSSSASPAATGKKRILTSGGHQTTGGLVA 235
Query: 158 KGDVETNALSEAPNSPMSSESLTNTLSTASA-SPDFSSHHITD--PSLLYNPPDLNKNIT 214
+ +A +P+ ++ L N A P+ ++ PS + P NK
Sbjct: 236 TRNQRGDAARGSPSGRGAAARLMNLEGEVGARKPNVDMRRVSQGQPSSFWGPQSPNKEAA 295
Query: 215 EIFGKLINIYRALGEDRRSFS---YYKAIPVIEKLPFKIESADQVKGLP--------GIG 263
++ L + G D F+ + A + L +I +Q+K L G+G
Sbjct: 296 DMLDGLAELCATRGGDGSVFNERGFKSAAAALRMLGTQITDIEQLKDLRKNDPERVRGVG 355
Query: 264 KSMQDHIQEIVTTGK---LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLD 320
+ + GK + + + + LF EV +G A++LY+KG R+++
Sbjct: 356 DGAMKELTAFLAEGKGKSRAPVSGADPPAPEACLKLFQEVGWVGAVKARQLYDKGMRSIE 415
Query: 321 DLKNE--DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYR 378
DL+ D LT R+ L +DIK R+PR E ++E + K + + P VI GSYR
Sbjct: 416 DLRTSGRDLLTEQMRVCLNRHEDIKQRMPRSEAAEIEAAVTKVAQSICPGVICQACGSYR 475
Query: 379 RGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDL------------------ 420
RGK++CGD+DV+I P+ + + +K+L E F+ + L
Sbjct: 476 RGKSNCGDVDVLIRPPEGQEDSPMFLELIKELTETGFITDRLAMPEGPYTPGKPQTFMGV 535
Query: 421 --------IFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPAT 472
I ++YP ++AF ++ +TG+ N +R A+SKG +L+D GLF
Sbjct: 536 CKLPGEGQIHRRLDVKLYPTSMFAFAVLYFTGSGDFNMNMRCFAKSKGLKLNDKGLFKVD 595
Query: 473 YGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
SG + + L+ E++VF LG W+EP +R
Sbjct: 596 PFSGEEVPNSGYSCLR---EEDVFSALGMDWIEPKDR 629
>gi|354485251|ref|XP_003504797.1| PREDICTED: DNA-directed DNA/RNA polymerase mu [Cricetulus griseus]
gi|344252516|gb|EGW08620.1| DNA polymerase mu [Cricetulus griseus]
Length = 491
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 89/333 (26%), Positives = 152/333 (45%), Gaps = 60/333 (18%)
Query: 228 GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEK 287
G + R S+Y+A V++ LP + S Q++GLP G+ IQE++ G ++E
Sbjct: 168 GNEGRLLSFYRAASVLKSLPCPVTSLSQLQGLPHFGEHSSRVIQELLEHGACEEVERVRC 227
Query: 288 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-LTHSQRLGLKYFDDIKTRI 346
E+ +T+ LF +++G+G TA + Y++G RTLD+L+ + LT Q+ GL+Y+ D+ T +
Sbjct: 228 SERHQTMKLFTQIFGVGVKTANRWYQEGLRTLDELREQPQRLTQQQKAGLQYYQDLSTPV 287
Query: 347 PRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY 406
R + E +++L++ A + LP + G +RRGK+ D+D +I HP+ G L K
Sbjct: 288 GRADAEALQQLVEAAVRQTLPGATVTLTGGFRRGKSQGHDVDFLITHPEEGQEVGLLPKV 347
Query: 407 VKKLKEM----------------KFLREDLIFSTHSEE---------------------- 428
++ L+ LR++
Sbjct: 348 MRHLQSQGLVLYHQHHRSHLDSTHLLRQNYTMDAFERSFCILCLPQPPHAALGGTLHPCP 407
Query: 429 ----------VYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGG 477
V P + F L+ WTG+ + R LR + + KG L+ GLF
Sbjct: 408 TWKAVRVDLVVTPNSQFPFALLGWTGSQLFERELRRFSRQEKGLWLNSHGLF-------- 459
Query: 478 KQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+T +E+++F LG +L P +RN
Sbjct: 460 --DPEQKTFFHATSEEDIFRLLGLKYLPPEQRN 490
>gi|157830423|pdb|1BPB|A Chain A, Crystal Structure Of Rat Dna Polymerase Beta: Evidence For
A Common Polymerase Mechanism
gi|157832157|pdb|1NOM|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7), 31-Kd Domain;
Soaked In The Presence Of Mncl2 (5 Millimolar)
gi|157834405|pdb|1ZQU|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7), 31-Kd Domain;
Soaked In The Presence Of Artificial Mother Liquor
gi|157834406|pdb|1ZQV|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7), 31-Kd Domain;
Soaked In The Presence Of Cacl2 (150 Millimolar)
gi|157834407|pdb|1ZQW|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7), 31-Kd Domain;
Soaked In The Presence Of Cscl (150 Millimolar)
gi|157834408|pdb|1ZQX|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7), 31-Kd Domain;
Soaked In The Presence Of Kcl (150 Millimolar)
gi|157834409|pdb|1ZQY|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7), 31-Kd Domain;
Soaked In The Presence Of Mgcl2 (50 Millimolar)
gi|157834410|pdb|1ZQZ|A Chain A, Dna Polymerase Beta (Pol B) (E.C.2.7.7.7), 31-Kd Domain;
Soaked In The Presence Of Mncl2 (50 Millimolar)
gi|157834699|pdb|2BPC|A Chain A, Crystal Structure Of Rat Dna Polymerase Beta: Evidence For
A Common Polymerase Mechanism
Length = 248
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 144/251 (57%), Gaps = 33/251 (13%)
Query: 287 KDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTR 345
+D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED L H QR+GLKYF+D + R
Sbjct: 3 QDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNEDKLNHHQRIGLKYFEDFEKR 62
Query: 346 IPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKG---- 401
IPR E+ QM+ ++ +++ PE I GS+RRG S GD+DV++ HP+ S
Sbjct: 63 IPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPNFTSESSKQPK 122
Query: 402 FLSKYVKKLKEMKFLREDL------------IFSTHSEEVY----------PRDIYAFGL 439
L + V++L++++F+ + L + S + E Y P+D Y G+
Sbjct: 123 LLHRVVEQLQKVRFITDTLSKGETKFMGVCQLPSENDENEYPHRRIDIRLIPKDQYYCGV 182
Query: 440 IAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFL 499
+ +TG+D+ N+ +R A KG+ +++ + P G GV A L D+E+++FD++
Sbjct: 183 LYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTGV-AGEPLPVDSEQDIFDYI 236
Query: 500 GFPWLEPHERN 510
+ + EP +R+
Sbjct: 237 QWRYREPKDRS 247
>gi|402220520|gb|EJU00591.1| Nucleotidyltransferase [Dacryopinax sp. DJM-731 SS1]
Length = 269
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 136/266 (51%), Gaps = 29/266 (10%)
Query: 272 EIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL---KNEDSL 328
EI+ TG+L +++ E E+ R LF ++ +G A + + G RTL+D+ K+E L
Sbjct: 2 EIIETGQLQRIQA-EDTEEYRVCRLFAGIYDVGRKRAHEWWRMGLRTLEDVEKRKDEIKL 60
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
T +Q +GLKY+DD++ RIPR E + +++ + + + GSYRRG + GD+D
Sbjct: 61 TRNQAIGLKYYDDLQERIPRAEASVIFDKIKELAMTIDGNITLYIMGSYRRGAETVGDID 120
Query: 389 VVIMH--PDRKSHKGFLSKYVKKLKEMKFLREDLIF--STHSEE---------------- 428
+++ D ++H G L+K ++ L E L DL THS E
Sbjct: 121 ILLTRDPSDGRTHSGMLNKLIRLLHEKGLLTNDLAVPADTHSLEQKYMGIGRLPPDGKMR 180
Query: 429 -----VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRA 483
P D LI +TG+D+ NR +RLLA KGY L+ GL+ ++ +
Sbjct: 181 RIDVLAIPWDQKGAALIYFTGDDLFNRSIRLLAHKKGYSLNQRGLYGGIIRDNKRRKMTE 240
Query: 484 RTSLKFDTEKEVFDFLGFPWLEPHER 509
+ TEKE+FD LG PW EP ER
Sbjct: 241 GVIIASKTEKEIFDILGVPWREPEER 266
>gi|183448136|pdb|2VAN|A Chain A, Nucleotidyl Transfer Mechanism Of Mismatched Dntp
Incorporation By Dna Polymerase B By Structural And
Kinetic Analyses
Length = 245
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 143/250 (57%), Gaps = 33/250 (13%)
Query: 288 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTRI 346
D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED L H QR+GLKYF+D + RI
Sbjct: 1 DDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNEDKLNHHQRIGLKYFEDFEKRI 60
Query: 347 PRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKG----F 402
PR E+ QM+ ++ +++ PE I GS+RRG S GD+DV++ HP+ S
Sbjct: 61 PREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPNFTSESSKQPKL 120
Query: 403 LSKYVKKLKEMKFLREDL------------IFSTHSEEVY----------PRDIYAFGLI 440
L + V++L++++F+ + L + S + E Y P+D Y G++
Sbjct: 121 LHRVVEQLQKVRFITDTLSKGETKFMGVCQLPSENDENEYPHRRIDIRLQPKDQYYCGVL 180
Query: 441 AWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLG 500
+TG+D+ N+ +R A KG+ +++ + P G GV A L D+E+++FD++
Sbjct: 181 YFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTGV-AGEPLPVDSEQDIFDYIQ 234
Query: 501 FPWLEPHERN 510
+ + EP +R+
Sbjct: 235 WRYREPKDRS 244
>gi|295321725|pdb|3K75|D Chain D, X-Ray Crystal Structure Of Reduced Xrcc1 Bound To Dna Pol
Beta Catalytic Domain
gi|295321726|pdb|3K75|E Chain E, X-Ray Crystal Structure Of Reduced Xrcc1 Bound To Dna Pol
Beta Catalytic Domain
Length = 252
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 143/250 (57%), Gaps = 33/250 (13%)
Query: 288 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTRI 346
D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED L H QR+GLKYF+D + RI
Sbjct: 2 DDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNEDKLNHHQRIGLKYFEDFEKRI 61
Query: 347 PRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKG----F 402
PR E+ QM+ ++ +++ PE I GS+RRG S GD+DV++ HP+ S
Sbjct: 62 PREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPNFTSESSKQPKL 121
Query: 403 LSKYVKKLKEMKFLREDL------------IFSTHSEEVY----------PRDIYAFGLI 440
L + V++L++++F+ + L + S + E Y P+D Y G++
Sbjct: 122 LHRVVEQLQKVRFITDTLSKGETKFMGVCQLPSENDENEYPHRRIDIRLIPKDQYYCGVL 181
Query: 441 AWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLG 500
+TG+D+ N+ +R A KG+ +++ + P G GV A L D+E+++FD++
Sbjct: 182 YFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTGV-AGEPLPVDSEQDIFDYIQ 235
Query: 501 FPWLEPHERN 510
+ + EP +R+
Sbjct: 236 WRYREPKDRS 245
>gi|298712876|emb|CBJ33393.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 428
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 92/335 (27%), Positives = 157/335 (46%), Gaps = 38/335 (11%)
Query: 212 NITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLP--------GIG 263
N+ E KL + G + + A V+ +L +I + Q+K L G+G
Sbjct: 40 NMLEDLAKLCAVRGGDGSVFKERGFKNAAGVLRRLGVQITNIQQLKDLRKHEPQRVRGLG 99
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 323
S+ + G++ +L+ E D K++ + + EV +G AQ+LY+KG R+++DL+
Sbjct: 100 DSVMKELSTFYEEGRMHRLDGLEADPKLKCLKILQEVGWVGAVKAQQLYDKGVRSIEDLR 159
Query: 324 NEDS--LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGK 381
+ L+ ++ L +DI R+PR E ++E ++ K + + P VI GSYRRGK
Sbjct: 160 TKGLHLLSEQAQICLSRHEDIMQRMPRSEAAEIEAVVTKVAQSICPGVICQACGSYRRGK 219
Query: 382 ASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE-------------- 427
+ CGD+DV+I P+ + +K+L E F+ + L +
Sbjct: 220 SHCGDVDVLIRPPEGQEDSPMFDDLIKRLVETGFITDKLTLAGGPHRPGKSQSFMGICKL 279
Query: 428 ------------EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS 475
+ YP ++AF ++ +TG+ NR +R A+ KG +L D GL +
Sbjct: 280 PGTGRLHRRVDIKFYPTSLFAFAVLYFTGSSHFNRSMRSFAKIKGLKLSDKGLCRVNTVN 339
Query: 476 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
G + V S E++VF LG W EP +R+
Sbjct: 340 G--EEVHRFPSYSCLREEDVFTALGLEWREPKDRD 372
>gi|134114790|ref|XP_773693.1| hypothetical protein CNBH1480 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256321|gb|EAL19046.1| hypothetical protein CNBH1480 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 791
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 99/336 (29%), Positives = 165/336 (49%), Gaps = 46/336 (13%)
Query: 210 NKNITEIFGKLINIYRA-LGEDRRSFSYYK-AIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N+ + E F +L ++Y +G++ S Y+ A + + F I S Q + + GIG+++
Sbjct: 464 NEWLAEKFDQLHDLYEGQVGKNPHSIRQYRNAAAAMRRTTFPITSGAQAREINGIGEALA 523
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-ED 326
+ I E ++ + +E +E R ++LF +++G+G A +LY G RT+ DL+
Sbjct: 524 ERINEFIS--GVPGRTFYEDNEHARCVALFKDIYGVGRQYANELYRMGARTITDLRTGRF 581
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L+ Q++GL ++D+++RIPR E +Q+ L++ + V ++ + GSYRRG + GD
Sbjct: 582 PLSTGQQIGLALYEDLRSRIPREECKQIYELIKLEAKTVDEKLWVEIMGSYRRGSETSGD 641
Query: 387 LDVVIMH--PDRKSHKGFLSKYVKKLKEMKFLREDL---------------IFSTHSEEV 429
+D++I D KSHKG + K V KLK + +L + +
Sbjct: 642 VDILITRDDADGKSHKGAIKKLVDKLKAKGVITHELSAPHDWNALEAKWMGVGRVGQSAM 701
Query: 430 Y--------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGV 481
Y P + + LI +TG ++ NR LRL A GY L+ GL+ + V
Sbjct: 702 YRRIDILCVPYESWGASLIYFTGKNLFNRSLRLYARRLGYNLNQRGLY--------RNVV 753
Query: 482 RARTSLKF--------DTEKEVFDFLGFPWLEPHER 509
RAR K TE+ +F LG W PH R
Sbjct: 754 RARDGTKVLEGDRVASRTEEGIFQELGLRWRHPHHR 789
>gi|167527506|ref|XP_001748085.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773503|gb|EDQ87142.1| predicted protein [Monosiga brevicollis MX1]
Length = 369
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 102/345 (29%), Positives = 157/345 (45%), Gaps = 51/345 (14%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 268
N I + +L + R + + + +Y KA I + S + L G+GK + +
Sbjct: 31 NAEICDFLNQLADYERNVSRNIHKYNAYRKAARSIAAHSLPLRSGKDAQRLDGVGKKIGE 90
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL 328
I+E +TTG L KL+ + + I L V G GPA AQ +KG TL+ LK ED L
Sbjct: 91 KIEEFLTTGGLKKLDKINANPEAAAIQLIASVVGFGPAAAQNYVQKGITTLEALKQEDGL 150
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
+++Q++GLK+F D RIPR EVE + + + EV + GS+RRG A+ GD+D
Sbjct: 151 SNAQKIGLKHFADFNERIPRAEVEALRQAVFAELREVDDRLEGQVCGSFRRGAATSGDID 210
Query: 389 VVIMHPDRKS-----------------HKGFLSKYVKKLK------------EMKFLRED 419
+++ HPD KS L + + LK E KF+
Sbjct: 211 ILLTHPDFKSTGDGEALGKTKKKLDPPFDKLLDRVISHLKKVGLVTDVLSLGESKFMGVA 270
Query: 420 LIFSTHSEE---------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLD 464
+ T E ++P D Y L+ +TG+D N+ +R A G+RL
Sbjct: 271 RLPETQFSEAGLAPPRRFRRIDMRLWPVDQYPLALLYFTGSDETNKTMRRKAIDLGFRLS 330
Query: 465 DTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ L P + + + L +EK+VFD L +LEP +R
Sbjct: 331 EYSLRPMS------EDDKPGRPLPVSSEKDVFDALDMTYLEPAQR 369
>gi|346979683|gb|EGY23135.1| DNA polymerase lambda [Verticillium dahliae VdLs.17]
Length = 381
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 94/363 (25%), Positives = 158/363 (43%), Gaps = 65/363 (17%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 264
NPP N E ++ + LG++ +Y AI + P+ I ++ LPG G
Sbjct: 23 NPP--NNEFVEALKEIRTTRKLLGDEIGVRAYSTAIATVAAYPYAISTSPAR--LPGCGS 78
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-- 322
+ + + TTG L +++ +++ ++ LF +WG+G TA++ Y+KG R LDDL
Sbjct: 79 KIAELYHQWKTTGSLGEIDSSQQEARLPVFRLFYNIWGVGDTTAREFYKKGWRDLDDLVE 138
Query: 323 KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA 382
D L+ Q++G+KY+D+ IPRHEVE + + + +E+ P + G +RRGK
Sbjct: 139 YGWDRLSRVQQIGVKYYDEFLQPIPRHEVEAIAATILRQAQEIEPGFQLTIVGGHRRGKK 198
Query: 383 SCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE-------------- 428
S GD+DV++ H D + F+ + V L++ +F+ L STH+ E
Sbjct: 199 SSGDVDVILSHADEDATYRFIERLVASLEKAQFITHTLTLSTHNSERGQKPLTWKADTAR 258
Query: 429 ------------------------------------VYPRDIYAFGLIAWTGNDVLNRRL 452
+ P ++ W+G R +
Sbjct: 259 TKGAGFDTLDKAMVVWQEPGSKDSASDRPHRRVDIIISPWKTVGCAVLGWSGGTTFQRDV 318
Query: 453 RLLAESK-GYRLDDTGLFPATYGSG-----GKQGVRARTSLKFDTEKEVFDFLGFPWLEP 506
R + + GY+ D +G+ + GS G QG E+ VF+ LG W P
Sbjct: 319 RRYCKKELGYKFDSSGIRKRSDGSWVDLERGNQGTAPDM---VTAEQRVFEGLGLDWQPP 375
Query: 507 HER 509
+R
Sbjct: 376 EQR 378
>gi|85102863|ref|XP_961407.1| hypothetical protein NCU01321 [Neurospora crassa OR74A]
gi|11595591|emb|CAC18211.1| related to DNA polymerase Tdt-N [Neurospora crassa]
gi|28922952|gb|EAA32171.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 602
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 132/244 (54%), Gaps = 10/244 (4%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 264
+PP N+ E K+ LG+ +Y AI + P+ ++SA +V LPG G
Sbjct: 240 HPP--NEPFIEELMKIRTARTLLGDKIGVRAYSSAIAALISYPYPLQSAFEVARLPGCGL 297
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-- 322
+ QE G+L + + E D ++ + LF E+WG+ TA++ Y KG R LDD+
Sbjct: 298 KIAQLYQEFREQGELQEAKEDESDPRLAVLKLFHEIWGVAETTAREFYNKGWRDLDDIVE 357
Query: 323 KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA 382
D+LT Q++G+KY+D+ + +I R EVE + ++ + ++ P ++ G YRRGK
Sbjct: 358 YGWDTLTRVQQIGVKYYDEFQQKIARAEVESIANIILEHANKIHPGFQMVIVGGYRRGKL 417
Query: 383 SCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEVYPRDIYAFGLIAW 442
+ GD+DVV+ HPD+ + +GF+ + V L++ ++ LI ST + E +AW
Sbjct: 418 ASGDVDVVLSHPDKAATRGFVEQIVVALEQSNYITHTLILSTANTE------RGQEPVAW 471
Query: 443 TGND 446
GN+
Sbjct: 472 KGNE 475
>gi|426227873|ref|XP_004008039.1| PREDICTED: DNA-directed DNA/RNA polymerase mu [Ovis aries]
Length = 488
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 93/349 (26%), Positives = 156/349 (44%), Gaps = 58/349 (16%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N +++E L G + R S+Y+A V++ LP + + Q++GLP G+
Sbjct: 149 NASLSEALETLAEAAGFDGSEGRQISFYRAASVLKALPSSVTALSQLQGLPHFGEHSCRV 208
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-L 328
+QE++ G ++E E+ +T+ LF +++G+G TA + Y KG RTLDDL+ E L
Sbjct: 209 VQELLEHGVCDEVERIRLSERYQTMKLFTQIFGVGVRTADQWYRKGLRTLDDLQEESHRL 268
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
T Q+ GL++ D+ I R EVE ++++++ A + LP + G +RRGK D+D
Sbjct: 269 TQQQKAGLQHHQDLSALILRSEVETLQQVVEAAVTQALPGATVTLAGGFRRGKLQGHDVD 328
Query: 389 VVIMHPDRKSHKGFLSKYVKKLKEMKFL---------REDLIFSTHSEEVYPRDI----- 434
+I HP G L + + LKE + + DL +H+ + + R
Sbjct: 329 FLITHPQEGQEAGLLPRVMCYLKEQGLVLYHQHQHSQQGDLTQQSHTMDAFERSFCIFRL 388
Query: 435 --------------------------------YAFGLIAWTGNDVLNRRLRLLA-ESKGY 461
+ F L+ WTG+ R LR + + KG
Sbjct: 389 PQPPGAAVGGAQKPCFTWKAVRVDLVVAPISQFPFALLGWTGSKHFERELRRFSRKEKGL 448
Query: 462 RLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
L+ GLF +T +E+++F L +L P +RN
Sbjct: 449 CLNSHGLF----------DPEQKTVFHVASEEDIFRLLDLEYLPPEQRN 487
>gi|171692149|ref|XP_001910999.1| hypothetical protein [Podospora anserina S mat+]
gi|170946023|emb|CAP72824.1| unnamed protein product [Podospora anserina S mat+]
Length = 618
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 127/508 (25%), Positives = 210/508 (41%), Gaps = 99/508 (19%)
Query: 85 VIRYQWLEDSLRLGEKVSED----LYRIK--LDPEGENIADRVLSQIQGNGNTSSDGESS 138
V + W DSL GE + D +YR + + P + + + + E S
Sbjct: 124 VAKLSWFTDSLSAGEVLPLDDKYAIYRGRKAMQPPPAPASVQTTPTKSTSNILTRAHEDS 183
Query: 139 HRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNT------LSTASASPDF 192
H + SS + + S+G S+ P S +S +T T L ++ D
Sbjct: 184 HPRTPPSSQK-----RYSSQGS------SQKPGSTYASHPVTKTPKRPALLRQTTSEHDL 232
Query: 193 SSHHITDPSLLY-----------NPPDLNKNITEIFGKLINIYRALGEDRRSF-SYYKAI 240
+H P L+ NPP N+ + + I + R L D+ +Y AI
Sbjct: 233 DTHLPPIPPCLHTTYSCQRSTPANPP--NQEFISLLLQ-IRLARTLTGDKIGVRAYSSAI 289
Query: 241 PVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEV 300
+ PF ++ ++V LPG G+ + QE T+G L + E ++ D K++ + LF ++
Sbjct: 290 ATVAAYPFPFQTQNEVARLPGCGQKIALLYQEYKTSGTLKEAEEYKSDPKLQVLKLFYDI 349
Query: 301 WGIGPATAQKLYEKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLL 358
WG+ TA++ Y KG R +DD+ D LT Q++G+KY+D+ +IPR EVE++ ++
Sbjct: 350 WGVAETTAREFYNKGWRDIDDVVEYGWDGLTRVQQIGVKYYDEFLLKIPRREVEEIGGVI 409
Query: 359 QKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLRE 418
K ++ ++ G YRRGK GD+DVV+ H D ++ +GF+ + V L+ ++
Sbjct: 410 LKEANKIEEGFGMVIVGGYRRGKKESGDVDVVLSHRDEEATRGFVERIVVGLERRGYITH 469
Query: 419 DLIFSTHSEE-------------------------------------------------- 428
L+ ST + E
Sbjct: 470 TLLLSTANTERGQEPVAWKGDSRVAGSGFDTLDKALVVWQDPNYEGEGRNTNPHRRVDII 529
Query: 429 VYPRDIYAFGLIAWTGNDVLNRRL-RLLAESKGYRLDDTGLFPATYG------SGGKQGV 481
+ P ++ WT R L R + KG + D +G+ G S G
Sbjct: 530 ISPWKTAGCAVLGWTSGTTFQRDLRRYCKKEKGLKFDSSGVRSRKDGAWVDLESDPVTGE 589
Query: 482 RARTSLKFDTEKEVFDFLGFPWLEPHER 509
A L E+ VF+ +G W EP ER
Sbjct: 590 PAPDMLT--AERRVFNGVGLEWREPEER 615
>gi|340516221|gb|EGR46471.1| predicted protein [Trichoderma reesei QM6a]
Length = 595
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 125/494 (25%), Positives = 198/494 (40%), Gaps = 87/494 (17%)
Query: 85 VIRYQWLEDSLRLG-------------EKVSEDLYRIKLDPEGENIADRVLSQIQGNGNT 131
V++ WL DSL G K+S + ++ D S++ +
Sbjct: 117 VVKLAWLLDSLERGVALPVQDYLLYRGRKISSQSLQASTPATPKSQTDEEASRLSHAAKS 176
Query: 132 SSDGESSHRKKIKSSTEDVEHFQAESKGDV---ETNALSEAPNSPMSSESLTNTLSTASA 188
S +S R I SST S+ ET + + P P+ E L T S
Sbjct: 177 SPSARTS-RPGISSSTASDSARAGRSEPPTLYHETTSEHDMPLPPIP-EYLHTTYSCQRP 234
Query: 189 SPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLP 247
SP NPP+ I E+ K I R L D +Y +I + P
Sbjct: 235 SP-------------VNPPN-AAFIAEL--KAIRTLRLLRGDHIGVRAYSTSIASLAAYP 278
Query: 248 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307
+ I+ +++ LPG G + Q+ TG E D ++ + +F E+WG+G T
Sbjct: 279 YAIQRPQEIERLPGCGVKIARLYQQWTLTGSTDDTRAAETDTEMAVLKMFYEIWGVGDVT 338
Query: 308 AQKLYEKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEV 365
A++ Y KG R LDD+ +SL+ Q++G+K++D+ + RIPR E E + ++ V
Sbjct: 339 ARQFYNKGWRDLDDIVEYGWNSLSRVQQIGVKFYDEFQLRIPRQETEAISSVILSHAHRV 398
Query: 366 LPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTH 425
P ++ GSYRRGK + GD+DV++ HPD G + K V L++ F+ L T
Sbjct: 399 DPGFQMVVVGSYRRGKPTSGDVDVIVSHPDEAQTLGIIEKLVSSLEKSGFITHILSIWTR 458
Query: 426 SEE-----------------------------------------------VYPRDIYAFG 438
+ E V P
Sbjct: 459 NSERGQAPLVWKGDDRPSGSGFDTLDKALVVWQDPDTKEQGGPHRRVDIIVSPWKTAGCA 518
Query: 439 LIAWTGNDVLNRRLRLLAESK-GYRLDDTGLFPATYGSGGK-QGVRARTSLKFDT-EKEV 495
++ W+G R LR +++ G + D +G+ G+ +G R + +T E+ V
Sbjct: 519 ILGWSGETTFQRDLRRYCKARLGLKFDSSGVRSRADGAWVDLEGSEGRPAPDMETAERRV 578
Query: 496 FDFLGFPWLEPHER 509
F+ LG W P ER
Sbjct: 579 FEGLGLEWRPPEER 592
>gi|111226476|ref|XP_001134542.1| DNA polymerase beta [Dictyostelium discoideum AX4]
gi|90970597|gb|EAS66859.1| DNA polymerase beta [Dictyostelium discoideum AX4]
Length = 509
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/219 (37%), Positives = 131/219 (59%), Gaps = 8/219 (3%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N+ +T+I +L + G + +Y KA I P +I S + + L G+GK +
Sbjct: 57 NQKLTDIITELSIFEKNKGLQHKYSAYRKAAQSIRAHPKEITSGIEAQKLDGVGKKIAKK 116
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSL 328
IQEI+ TG+L KL + KDE + +I +V GIGP AQK Y++G +++ DL K +D L
Sbjct: 117 IQEIIDTGELKKLNNQLKDETLTSIGEISKVSGIGPKAAQKFYDEGIKSIKDLWKIKDRL 176
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
TH Q++GLKYF++I+ ++PR+E+EQ E L+++A ++ ++I GSYRRG S GD+D
Sbjct: 177 THHQQIGLKYFNEIEQKVPRNEIEQFEELVRQALLKIDKKIIYETCGSYRRGLPSSGDVD 236
Query: 389 VVIMHP-------DRKSHKGFLSKYVKKLKEMKFLREDL 420
+++ HP D+K + K V LK+ + +DL
Sbjct: 237 ILLSHPNYTLKMKDKKETFHIVEKLVDSLKKSGIIIDDL 275
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 431 PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFD 490
P + Y FGL+ TG+D NR++R +A SKGY L + + + SG + + +
Sbjct: 434 PIESYYFGLLHNTGSDEFNRQMRAIALSKGYTLSEYSINKFSKESGKDDQI-----IPVN 488
Query: 491 TEKEVFDFLGFPWLEPHERNL 511
+E+E+F +G + P ER L
Sbjct: 489 SEEEIFKIIGMKYYPPQERKL 509
>gi|20067703|emb|CAD29093.1| chimeric DNA-directed DNA polymerase bf4-20 [synthetic construct]
Length = 331
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 107/329 (32%), Positives = 177/329 (53%), Gaps = 36/329 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQM-ERLLQKAGEEVLPEVI------ILCGGSYRR 379
L H QR+GLKYF+D + RIP + +++ L + E ++I I+ GS RR
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPLIQGKKIVNHLRSRLAFEYNGQLIKILSKNIVAVGSLRR 190
Query: 380 GKASCGDLDVVIMHPDRKSHKG--------FLSKYVKKLKEMKFLREDLIFSTHSEEVYP 431
+ D+D++I+ P++K K F++ + K E KF+ + S + E YP
Sbjct: 191 EEKMLNDVDLLIIVPEKKLLKHVLPNIRIRFITDTLSK-GETKFMGVCQLPSENDENEYP 249
Query: 432 ------RDIYA----FGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGV 481
R I A + + +TG ++ +R+ A KG+ +++ + P G GV
Sbjct: 250 HRRIDIRLIPAEEKPYAIFHFTGP--VSYLIRIRAALKGFTINEYTIRPL-----GVTGV 302
Query: 482 RARTSLKFDTEKEVFDFLGFPWLEPHERN 510
A L D+E+++FD++ + + EP +R+
Sbjct: 303 -AGEPLPVDSEQDIFDYIQWRYREPKDRS 330
>gi|405974067|gb|EKC38737.1| DNA polymerase beta [Crassostrea gigas]
Length = 373
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 105/371 (28%), Positives = 173/371 (46%), Gaps = 74/371 (19%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLP--- 260
NP NK+ + +L N + + + +Y KA+ V+ K P +++S + K L
Sbjct: 11 NP---NKDFCDFLMELANYEKNVNRQMHKYNAYRKAVGVLAKHPTRVKSGAEAKKLARTR 67
Query: 261 --------------------------------GIGKSMQDHIQEIVTTGKLSKLEHFEKD 288
GIG + I E + TG L KLE D
Sbjct: 68 LVISYFFKIIFAPRSTSQVLSLAGLIPSVPGDGIGDKIAKKIDEYIDTGSLRKLEKIRAD 127
Query: 289 EKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTRIP 347
+ I+ +V GIGPA AQKL ++G ++++L K+ D L H Q++GLK+F+D + RIP
Sbjct: 128 DTSVAINELTKVTGIGPAAAQKLVQEGITSIEELRKHPDKLNHHQQIGLKHFEDFEKRIP 187
Query: 348 RHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSH-KG---FL 403
R E+EQ++ ++ + GS+RRG S GD+D+++ HPD S KG L
Sbjct: 188 RAEMEQIQDTAFSEIRKLDDKFEARVCGSFRRGAESSGDIDILLTHPDYTSKTKGKPDLL 247
Query: 404 SKYVKKLKEMKFLREDLI------------------------FSTHSEEVYPRDIYAFGL 439
+ VK+L+++ + + L+ F + P D Y L
Sbjct: 248 HQVVKRLEKVGLITDTLVHGDFKFMGVCRVLESSPGSSKERCFRRIDIRLIPHDQYYCAL 307
Query: 440 IAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFL 499
+ +TG+D+ N+ +R A G+ L++ L P GS G G L +E+++FD+L
Sbjct: 308 LYFTGSDIFNKNMRAHALEVGFTLNEYTLRP--LGSTGTPG----EPLPVTSEEDIFDYL 361
Query: 500 GFPWLEPHERN 510
G + +P++RN
Sbjct: 362 GMEYKQPYQRN 372
>gi|303283880|ref|XP_003061231.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457582|gb|EEH54881.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 368
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 103/368 (27%), Positives = 171/368 (46%), Gaps = 73/368 (19%)
Query: 205 NPP---DLNKNITEIFGKLINIY-RALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLP 260
+PP +LN +IT+ L IY + LG+ ++ ++ A I+ LPFK +Q+ P
Sbjct: 13 DPPKGVNLNAHITDKLEDLAEIYDKVLGDPYKAKNHNLAANAIKDLPFKATRIEQLVDPP 72
Query: 261 GIG------KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK 314
I +++ I EI+TTG+L KLE +++++V + VWG+G A A+ L+
Sbjct: 73 VIPAMASKRSTVRGKINEILTTGRLQKLEELKRNDRVVAVRELTRVWGVGEAKARHLFNV 132
Query: 315 GHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCG 374
G +T++ L+ Q +GLKYFD+ R+PR E + +++A P + +
Sbjct: 133 GIKTVNQLRAR------QMIGLKYFDEFDQRMPREEASAIAGYVERAARRACPGCVAVAA 186
Query: 375 GSYRRGKASCGDLDVVIMHPDRK------------------SHKGFLSKYVKKLKEMKFL 416
GSYRRGK +CGDLDV+I P R+ + K L + +L+ L
Sbjct: 187 GSYRRGKPTCGDLDVLI-SPTREWMTAESCGSLGDGRGGVSTFKDILPTVLAELRGKGVL 245
Query: 417 REDLIFS-----------------------------THSE---EVYPRDIYAFGLIAWTG 444
+DL TH +VY + F L+ +TG
Sbjct: 246 TDDLSVGKDSYMGLARADADADGGGGMGVVPVEPARTHRRIDVKVYAPEELPFALLYFTG 305
Query: 445 NDVLNRRLRLLAESK-GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPW 503
+ NR +R A+ + G L+D G+F T + K T + D E +VF++L +
Sbjct: 306 SGYFNRSMRYWAKRRFGLSLNDKGIFRETSNAASKV-----TDAEIDDEADVFEYLRLKY 360
Query: 504 LEPHERNL 511
+ P +R++
Sbjct: 361 VAPEDRSV 368
>gi|320163731|gb|EFW40630.1| polymerase [Capsaspora owczarzaki ATCC 30864]
Length = 977
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 124/216 (57%), Gaps = 10/216 (4%)
Query: 206 PPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKS 265
P + NK +T+IF L YRA + R+ Y KAI ++ IES + LP +G+
Sbjct: 568 PINHNKQVTDIFEMLEGDYRAQKDTWRAMGYQKAITALKHHHKPIESFAEALALPNVGER 627
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE 325
+ + EIV+TG L +L+ ++D +++ I +V+G+GP TAQKLY KG ++D L+ +
Sbjct: 628 LAKKVWEIVSTGHLRRLD--DRDPRLKVILEMSQVYGVGPTTAQKLYAKGIHSMDQLRAQ 685
Query: 326 DS-LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 384
S L ++G+K++DD+ +IPR EV + + V++ GSYRRGK +C
Sbjct: 686 ASQLPPIMQIGVKHYDDLLKKIPRAEVYHFAKQINSG-------VLVAICGSYRRGKDTC 738
Query: 385 GDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDL 420
GD+D+++ HPD ++H ++ + LK L + L
Sbjct: 739 GDVDILLSHPDGRAHTDIYNRLIPILKRDGLLTDHL 774
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 435 YAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRART-----SLKF 489
+ L+ +TG+ NR +RLLA + L L + G + +RA L
Sbjct: 902 WGTALLYFTGSGYFNRSMRLLARKRHMSLSQHSL------NVGVKRLRAEKLTEGEPLLT 955
Query: 490 DTEKEVFDFLGFPWLEPHERNL 511
TE VF+ LG P+L PHERN+
Sbjct: 956 PTEHSVFEALGLPYLAPHERNV 977
>gi|340520975|gb|EGR51210.1| DNA polymerase [Trichoderma reesei QM6a]
Length = 743
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 124/215 (57%), Gaps = 3/215 (1%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 264
N + N E+ K+ + Y + R+ +Y KAI +++ KI + ++ LP IG+
Sbjct: 372 NQGNPNSRTIEVLQKMNSYYERTNDQWRTMAYRKAISTLKQQTVKITTEEEAYRLPSIGR 431
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN 324
+ I+EIVTT KL +LE+ E++ + F ++G+G A++ +G RTLDD++
Sbjct: 432 RLAQKIEEIVTTDKLRRLEYAEREPSDHALQAFLGIYGVGNKVAEQWIAQGWRTLDDVRK 491
Query: 325 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 384
LT SQR+GL++++D+ TRIPR EV + ++ +A + V ++ GGSYRRG S
Sbjct: 492 HAKLTPSQRIGLEHYEDLNTRIPRSEVTALGEVVMRAAGRIDARVQVIVGGSYRRGAESS 551
Query: 385 GDLDVVIMHPDRKSH---KGFLSKYVKKLKEMKFL 416
D+D+++ P ++ K FL++ V +L+ FL
Sbjct: 552 HDIDLIVTRPGTEAAADLKPFLNELVDRLERDGFL 586
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%)
Query: 438 GLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFD 497
LI +TGND+ NR +RLLA KG RL+ GL+ + V +++ E+ +F+
Sbjct: 670 ALIYFTGNDIFNRSMRLLASKKGMRLNQRGLYRNVLRGPARIKVTEGEAVESRDERRIFE 729
Query: 498 FLGFPWLEPHER 509
LG W EP ER
Sbjct: 730 ILGVKWREPWER 741
>gi|452847333|gb|EME49265.1| hypothetical protein DOTSEDRAFT_76625 [Dothistroma septosporum
NZE10]
Length = 827
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 140/284 (49%), Gaps = 24/284 (8%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N I ++ + Y G++ R +Y KA+ + P ++ S ++ LP +G+ +
Sbjct: 389 NTATITILQQMADYYGQTGDEWRIRAYRKAMSSLRNHPTRVTSKEEALALPNVGERLATK 448
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EI T +L +L++ + + + + F V+G G A + G+ TLD++ + SLT
Sbjct: 449 IEEIAFTNRLRRLDNAKAEPNDQVLQTFMGVYGAGLVQASRWVSAGYTTLDEVLQKASLT 508
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+QR+G++++ D +RIPR EV + +++ A +++ ++ GGSYRRG GD+D
Sbjct: 509 QNQRIGIEHYADFNSRIPRAEVARHGSVVRGALKKIDSAFEVIVGGSYRRGSKDSGDIDC 568
Query: 390 VIMHPDRKS---HKGFLSKYVKKLKEMKFLREDLIFSTHSEE------------------ 428
+I P + + V +L FL L ++ +
Sbjct: 569 IITRPGTNADHLRNVVFGQVVPQLTASGFLVASLAITSRDDGSKWHGASCLPDSSAWRRL 628
Query: 429 ---VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLF 469
+ P D LI +TGND+ NR LRLLA +KG RL+ GLF
Sbjct: 629 DLLLVPSDELGAALIYFTGNDIFNRSLRLLASTKGMRLNQHGLF 672
>gi|10441984|gb|AAG17269.1|AF218027_1 unknown [Homo sapiens]
gi|119570150|gb|EAW49765.1| polymerase (DNA directed), lambda, isoform CRA_i [Homo sapiens]
Length = 248
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 129/246 (52%), Gaps = 24/246 (9%)
Query: 289 EKVRTISLFGEVWG-IGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIP 347
E + SL W I A+ + +G R+L+D++++ SLT Q +GLK++ D R+P
Sbjct: 2 EALCVCSLMPLHWSWILTASHLAAFFQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMP 61
Query: 348 RHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYV 407
R E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ +
Sbjct: 62 REEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLL 121
Query: 408 KKLKEMKFLREDLIFSTHSEE-----------------------VYPRDIYAFGLIAWTG 444
L++ FL +DL+ + + V P +A L+ +TG
Sbjct: 122 DSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTG 181
Query: 445 NDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWL 504
+ NR +R LA++KG L + L A + V L TEK+VF LG P+
Sbjct: 182 SAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYR 241
Query: 505 EPHERN 510
EP ER+
Sbjct: 242 EPAERD 247
>gi|336266798|ref|XP_003348166.1| hypothetical protein SMAC_04011 [Sordaria macrospora k-hell]
gi|380091102|emb|CCC11308.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 604
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 136/256 (53%), Gaps = 11/256 (4%)
Query: 193 SSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIES 252
+++ P+ ++ P N+ E K+ LG+ +Y AI + P+ ++S
Sbjct: 231 TTYACQRPAPMHPP---NEPFIEELMKIRTARTLLGDKIGVRAYSTAIAALTSYPYPLQS 287
Query: 253 ADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY 312
+V LPG G + E G+L + + E D ++ + LF E+WG+ TA++ Y
Sbjct: 288 TLEVARLPGCGFKIAQLYGEFREHGELQETKEDESDPRIAVLKLFYEIWGVAETTAREFY 347
Query: 313 EKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 370
KG R LDD+ D+LT Q++G+KY+D+ + ++PR EVE + +++ + ++ P
Sbjct: 348 NKGWRDLDDIVEYGWDTLTRVQQIGVKYYDEFQQKVPRGEVESISQIILEHANKIHPGFQ 407
Query: 371 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEVY 430
++ G +RRGK S GD+DVV+ HPD + KGF+ + V L++ ++ LI ST + E
Sbjct: 408 MVIVGGHRRGKLSSGDVDVVLSHPDEAATKGFVEQIVVALEQSNYITHTLILSTKNTE-- 465
Query: 431 PRDIYAFGLIAWTGND 446
+AW GN+
Sbjct: 466 ----RGQVPVAWKGNE 477
>gi|395850042|ref|XP_003797610.1| PREDICTED: DNA-directed DNA/RNA polymerase mu isoform 1 [Otolemur
garnettii]
Length = 491
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 109/444 (24%), Positives = 190/444 (42%), Gaps = 79/444 (17%)
Query: 132 SSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEA-PNSPMSSESLTNTLSTASASP 190
+ E +H ++S E+ +Q T A SE P + + LT +L+ P
Sbjct: 61 ACSSEVTHIVMEQTSAEEAVCWQEHRA----TAAPSECTPATLLDISWLTESLAAGQPVP 116
Query: 191 DFSSHHI-------TDPSLLYNPPDLNKNITEIFGKLINIYRAL----------GEDRRS 233
S H + PS ++ P + T + I++ AL G + S
Sbjct: 117 MESRHRLEVAEPRKAPPSSIWMPAYACQRPTPLTHHNISLSEALETLAEAAGFEGREGHS 176
Query: 234 FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRT 293
++ +A V+ LP + + Q++GLP G+ +QE++ G ++E E+ +T
Sbjct: 177 LTFLRAASVLRALPRPVVALTQLRGLPHFGEHSFRVVQELLEHGVCEEVERVRHSERFQT 236
Query: 294 ISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-LTHSQRLGLKYFDDIKTRIPRHEVE 352
+ LF +++G+G TA + Y++G RTLDDL+ + LT Q+ G++Y+ D+ T + + + E
Sbjct: 237 MKLFTQIFGVGVRTADRWYQEGLRTLDDLREQPQRLTQQQKAGVQYYQDLSTPVLQPDAE 296
Query: 353 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKE 412
+++L++ A E+VL + G +RRGK D+D +I HP+ G L + ++ L++
Sbjct: 297 ALQQLVEAAVEQVLSGATVTLTGGFRRGKLQGHDVDFLITHPEEGQEAGLLPRVIRCLQD 356
Query: 413 M------------------------KFLREDLIFSTHSEE-------------------- 428
F R IF
Sbjct: 357 QGLVLYQQYQHSLYGAPGHHSHTMDAFERSFCIFRLPQPPGASVREDPSCPAWKAVRVDL 416
Query: 429 -VYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTS 486
V P + F L+ WTG+ + R LR + + KG L+ GLF T
Sbjct: 417 VVAPISQFPFALLGWTGSKLFQRELRRFSRKEKGLCLNSHGLF----------NPEQNTV 466
Query: 487 LKFDTEKEVFDFLGFPWLEPHERN 510
+E+++F LG +L P +RN
Sbjct: 467 FHVASEEDIFRHLGLEYLPPEQRN 490
>gi|392560797|gb|EIW53979.1| Nucleotidyltransferase [Trametes versicolor FP-101664 SS1]
Length = 601
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 107/370 (28%), Positives = 165/370 (44%), Gaps = 91/370 (24%)
Query: 220 LINIYRAL-GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGK 278
+I RAL GEDR + SY +AI VI+ P +I S QV+ LP IG + + E + G
Sbjct: 241 IIRQSRALEGEDRSALSYQRAISVIKAYPERIRSLKQVQKLPYIGVKISGLVDEFLDNGH 300
Query: 279 LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK----NEDSLTHSQ-- 332
+S+ + + E+ RT+SLF ++GIGP A++L+ G R+L DL+ E S + +Q
Sbjct: 301 ISEAQTIKSSERFRTLSLFTSIYGIGPHAARRLFALGLRSLADLEIYYGVEPSSSPTQPS 360
Query: 333 ------------------------------------RLGLKYFDDIKTRIPRHEVEQMER 356
R+ L +D+ IPR EVE++ R
Sbjct: 361 QIVEVEPEKSRQAGWKGPGKDKDKGGQDEGLGESWIRVALGLREDLSKMIPRDEVEEIGR 420
Query: 357 LLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKE---- 412
++ + + + P + G YRRGK D+D+V HPD KG ++VK L E
Sbjct: 421 VVMRELDALEPGCVSTIVGGYRRGKTESNDVDIVFTHPDAGKVKGLCKRFVKHLHERGMV 480
Query: 413 ------MKFLREDLIFSTHSEE--------VYPR---------------DIYAFGLIAWT 443
F D + +TH + V PR ++Y ++ W+
Sbjct: 481 THVMHLSSFHAHDPLRTTHWDTLEKSLTVFVLPRAGAVRRRLDLIFAPPEVYWTAVVGWS 540
Query: 444 GNDVLNRRLRLLAESK-GYRLDDTGLFPATYGSGGKQGVRARTSLKFD--TEKEVFDFLG 500
G+ + R LR A+ + G + D +G+ R S +F TEKEVF+ LG
Sbjct: 541 GSIMFQRDLRQWAKDRCGMKFDSSGI------------TRRYDSKEFHPRTEKEVFELLG 588
Query: 501 FPWLEPHERN 510
W++P RN
Sbjct: 589 LEWVDPVWRN 598
>gi|170098384|ref|XP_001880411.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644849|gb|EDR09098.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 527
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 105/358 (29%), Positives = 167/358 (46%), Gaps = 82/358 (22%)
Query: 223 IYRAL---GEDRRSFSYYKAIPVIEKLPFKIESAD---QVKGLPGIGKSMQDHIQEIVTT 276
+YRA G + + Y +AI VI+ P I + + LP +G+ M I+E +TT
Sbjct: 179 LYRARELEGLEVNALGYERAIAVIKSYPNLIAHENFETDIVHLPFLGEKMLFKIREYLTT 238
Query: 277 GKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK------------- 323
G++ + E ++ +++S F V+G+GPATA+KLY+ G RT+DD+K
Sbjct: 239 GRIQESETTRASQRFQSLSAFSSVYGVGPATARKLYDDGLRTIDDMKRYYDVQEDTEVPQ 298
Query: 324 -NEDSLTH-----------SQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII 371
+S+T+ S ++GL ++D++T IPR EVEQ+ L+ + ++PE I
Sbjct: 299 LGANSVTNDLIRKDQIPNLSTKVGLALYEDLETPIPRSEVEQIHDLVMQEARYLMPECIS 358
Query: 372 LCGGSYRRGKASCGDLDVVIMHPDRKSH----KGFLSKYVKKLKEMKFL----------- 416
G YRRGK C D+D+VI P+ +S K K +K+L + L
Sbjct: 359 TVVGGYRRGKPYCNDVDIVIGCPNIQSGGNQVKALGEKLIKRLYDRGVLCLSGFHAQDSV 418
Query: 417 ---------REDLIFSTHSEEVYPR------------DIYAFGLIAWTGNDVLNRRLRLL 455
+ IF+ V+ R + Y +I WTG+ + R LRL
Sbjct: 419 RGAHLNLLEKAMTIFALPKNAVHQRVHRRLDLIFAAPETYWTAIIGWTGSKMFERDLRLW 478
Query: 456 AESK-GYRLDDTGLFPATYGSGGKQGVRARTSLKF--DTEKEVFDFLGFPWLEPHERN 510
A+ + G + D +GL R S F +E+ VF+ LG W++P RN
Sbjct: 479 AKVEMGMKFDSSGL------------TRRYDSKLFMPSSERHVFEILGLDWIDPTMRN 524
>gi|406698945|gb|EKD02166.1| hypothetical protein A1Q2_03528 [Trichosporon asahii var. asahii
CBS 8904]
Length = 919
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 102/334 (30%), Positives = 165/334 (49%), Gaps = 58/334 (17%)
Query: 210 NKNITEIFGKLINIYRAL-GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 268
N+ + + F KL IY+A G++ S Y P +I+S Q++ L +SM+
Sbjct: 521 NEALAKEFDKLHAIYKATPGKNEFSILQYS-----RGHPEQIKSGSQIRHL----RSMK- 570
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED-S 327
+ TG +L +FE ++ RTI+ F V+G+G A +LY +G R+++DL +D
Sbjct: 571 -----LLTGAKGRL-YFEDTDQARTIAKFQNVYGVGSRCAHELYSRGARSIEDLATKDFG 624
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 387
LT Q++G+K +DD+ RIPR E Q+ +++ +V + GSYRRG+A+ GD+
Sbjct: 625 LTVGQKIGVKLYDDLCARIPREECRQLFEIVRDQTLSFDDKVFVEIMGSYRRGEANSGDI 684
Query: 388 DVVIMH--PDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEV---------YPRDIY- 435
D++I D K+H+G + K V+ L E KF+ L +++ P I+
Sbjct: 685 DILITRDPSDGKTHQGLIGKVVQALSEKKFITHALGAPNDWQDLECKWMGVCRLPNGIHR 744
Query: 436 ------------AFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRA 483
L+ +TGN + NR +RL A +G+ L+ GL+ + +R
Sbjct: 745 RIDILSIPWEQKGAALLYFTGNAIFNRSMRLYARKRGFSLNQRGLY--------RNVIRN 796
Query: 484 RTSLKFD--------TEKEVFDFLGFPWLEPHER 509
R S K TE+E+FD L W PH R
Sbjct: 797 RQSEKVTEGEIVASRTEEEIFDILEIRWRPPHLR 830
>gi|119495890|ref|XP_001264721.1| DNA polymerase POL4, putative [Neosartorya fischeri NRRL 181]
gi|119412883|gb|EAW22824.1| DNA polymerase POL4, putative [Neosartorya fischeri NRRL 181]
Length = 674
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 139/268 (51%), Gaps = 24/268 (8%)
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE 325
+ D I+EIV T +L +LE+ + + F V+G G + A + +G+R+LDDLK +
Sbjct: 405 LADKIEEIVFTNRLRRLENANNTPEDLVLQEFLGVYGAGISQASRWIAQGYRSLDDLKTK 464
Query: 326 DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
SLT SQR+G++++ D RIPR EVE +++KA ++ P + ++ GGSYRRG + G
Sbjct: 465 ASLTKSQRIGVEHYHDFAQRIPRREVEAHGEIVRKAVQKADPGMQVIIGGSYRRGASDSG 524
Query: 386 DLDVVIMHPDRKSHK---GFLSKYVKKLKEMKFLREDLIFSTHSE-------------EV 429
D+D++I D + + + +L + FL+ L ++ S+ ++
Sbjct: 525 DIDLLITKGDATIEQITAMMMDTVIPRLFQDGFLQVSLASTSRSDGSKWHGASVLPGSKI 584
Query: 430 YPRDIYAF--------GLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGV 481
+ R F LI +TGND+ NR +RLLA KG RL+ GL+ ++ +
Sbjct: 585 WRRIDLLFVPGSEIGAALIYFTGNDIFNRSMRLLASKKGMRLNQRGLYADVLRGELRKKL 644
Query: 482 RARTSLKFDTEKEVFDFLGFPWLEPHER 509
L E+ +F+ LG PW P R
Sbjct: 645 SEGRLLDGRDERRIFEILGVPWRPPEHR 672
>gi|340904946|gb|EGS17314.1| DNA polymerase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 626
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 127/538 (23%), Positives = 216/538 (40%), Gaps = 89/538 (16%)
Query: 53 KLSKKVTH-------VLAMDLEALLQQVSKQHLARFKGS------VIRYQWLEDSLRLGE 99
KL++ VTH L D A + Q G V+R W +S++ G+
Sbjct: 94 KLTRSVTHSSGIGSDTLDSDTTASVSDAEIQRRLAGPGPAEQTVRVVRLAWFTESIKAGK 153
Query: 100 KVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSHRKKIKSSTE--DVEHFQAES 157
+ Y + EG + Q + SS+ K+ ++ E E F+ S
Sbjct: 154 VLPTRDYLLY---EGRKLRAAPAKQREKTSPASSEKSVEVMKRARADAEFSPGEGFRPPS 210
Query: 158 ----KGDVETNALSEAPNSPMSSESLTNTLSTASASPDF--SSHHITDPSLLYNPPDLNK 211
+G+ ++ + P + S + PD+ +++ P+ + NPP N+
Sbjct: 211 SQGRRGETYSSHPVKRPPLVRQTTSEHEIDTQLPPIPDYLHTTYSCQRPTPV-NPP--NE 267
Query: 212 NITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQ 271
+ + K+ +G+ +Y AI I P+ ++A +V LPG G + Q
Sbjct: 268 SFIKELEKIKTARTLMGDRIGVRAYSSAIATIAAYPYAFKTAQEVARLPGCGAKIAQLFQ 327
Query: 272 EIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL--KNEDSLT 329
E TG++++ + + ++ + LF E+WG+G TA+ Y +G R LDD+ DSLT
Sbjct: 328 EFKDTGQIAEANEDDSNPRLAVLKLFYEIWGVGETTARSFYNRGWRDLDDIVEYGWDSLT 387
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
Q++G+KY+D+ K IPR EVE++ + + + P ++ G YRRGK GD+DV
Sbjct: 388 RVQQIGVKYYDEFKQGIPREEVERIANTILEHANALHPGFEMVIVGGYRRGKLKSGDVDV 447
Query: 390 VIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE--------------------- 428
V+ H D + F+ + + +L+E ++ L ST + E
Sbjct: 448 VLSHRDENATHNFVERIIVRLEEAGYITHTLTLSTANSERGQIPVNWKGDDRRGAGTGFD 507
Query: 429 -------------------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAE 457
+ P ++ W+ R LR +
Sbjct: 508 TLDKALVVWQDPVWTTGEKKNPNPHRRVDIIISPWKTVGCAVLGWSSGTTFQRDLRRYCK 567
Query: 458 -SKGYRLDDTGLFPATYGS-----GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ + D +G+ GS G G A L EK VF+ LG W P ER
Sbjct: 568 RERALKFDSSGIRSRVDGSWVDLESGPNGEPAPDMLT--AEKRVFEGLGLVWRPPEER 623
>gi|291394899|ref|XP_002713892.1| PREDICTED: DNA-directed DNA polymerase mu-like [Oryctolagus
cuniculus]
Length = 495
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/355 (27%), Positives = 152/355 (42%), Gaps = 61/355 (17%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSM 266
P N ++E L G + R S+ +A V+ LP + + Q++GLP G+
Sbjct: 150 PHHNTALSEALETLAEAAGFEGSEGRLLSFRRAASVLRALPRPVTAHSQLQGLPHFGEHS 209
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED 326
+QE++ G ++E E+ RT+ LF +++G+G TA + Y++G RTLDDL+ +
Sbjct: 210 SRVVQELLEHGVCEEVERVRSSERFRTMKLFTQIFGVGVRTADRWYQEGLRTLDDLRQQP 269
Query: 327 -SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
LT QR GL+Y D+ T + R E E ++ L++ A + LP + G +RRGK
Sbjct: 270 RRLTAQQRAGLQYHQDLSTPVQRPEAEALQHLVEAAVGQALPGATVTLTGGFRRGKLLGH 329
Query: 386 DLDVVIMHPDRKSHKGFLSKYVKKLKEM---------------------------KFLRE 418
D+D +I HP G L + + L+ F R
Sbjct: 330 DVDFLISHPKEGREAGLLPRVMHHLQSQGLVLYHQHQPSCFGAPERLARPSRSMDAFERS 389
Query: 419 DLIFSTHSEE----------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLA 456
IF V P + F L+ WTG+++ R LR +
Sbjct: 390 LCIFRLLQPPGAALGGPAKAGPAWKAVRVDLVVAPSSQFPFALLGWTGSELFERELRRFS 449
Query: 457 -ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+ KG L GLF G T + +E+++F LG +L P +RN
Sbjct: 450 RKEKGLWLSSHGLFDPEQG----------TFISAASEEDIFRRLGLRYLPPEQRN 494
>gi|326434337|gb|EGD79907.1| hypothetical protein PTSG_10190 [Salpingoeca sp. ATCC 50818]
Length = 667
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/312 (29%), Positives = 148/312 (47%), Gaps = 42/312 (13%)
Query: 232 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
++ + + A+ I ++ I + +Q + +P +G I EI++TG L +LE F+ EK
Sbjct: 364 KASNLHTALAFIRRMKEPITTYEQARRIPKVGNETAKKIDEILSTGTLQRLEAFDTPEK- 422
Query: 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHE 350
R F +++G+G ATA++ KG RT+ DL N+ LT QR+G++ +++ RIPR E
Sbjct: 423 RAQHEFSQIYGVGTATAKQFVAKGFRTIQDLLDNQHELTERQRIGVRLHQELQERIPRTE 482
Query: 351 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 410
V++M ++ + P I GSYRRGK +CGD+DV+I H D++ + + L
Sbjct: 483 VDRMVAHVKHVVLSIEPGCIFEACGSYRRGKKTCGDVDVLISHRDKRVLDTLFKRVIDAL 542
Query: 411 KEMKFLREDLIFSTHSEEVY----------------------PRDIYAFGLIAWTGNDVL 448
+ FL DL S Y P + + ++ +TG+
Sbjct: 543 HDDGFLTHDLARSEGESTQYKYMGIGKLKDASFHRRVDIIVVPWEEWPCAILYFTGSGAF 602
Query: 449 NRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRAR----------TSLKFDTEKEVFDF 498
NR +RLLA G+ L + YG VR R + + +E +VF
Sbjct: 603 NRSMRLLARKMGWSLSQHTI---NYGV-----VRDRKEKDKKLGDGSVIPVKSEHDVFAL 654
Query: 499 LGFPWLEPHERN 510
L + P ERN
Sbjct: 655 LALKYRPPWERN 666
>gi|395323714|gb|EJF56174.1| Nucleotidyltransferase [Dichomitus squalens LYAD-421 SS1]
Length = 573
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 107/366 (29%), Positives = 155/366 (42%), Gaps = 102/366 (27%)
Query: 228 GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEK 287
GEDR + SY +A VI+ P KI S QV LP IG + I++ + TG + + E +
Sbjct: 224 GEDRSALSYERAASVIKAYPHKIRSLAQVVKLPFIGTKIGGLIEQYLNTGTILEAETIKG 283
Query: 288 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK------------------------ 323
E+ +T+SLF ++GIGP+TA++LY RTL+DL+
Sbjct: 284 SERFQTLSLFASIYGIGPSTARRLYHLNLRTLEDLEIYYGVERDDVGRQGQIVEVEEKPQ 343
Query: 324 ----------NEDSLTHSQ-RLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIIL 372
+D L S R+ L +D+ RIPR EVE+M R++ + P +
Sbjct: 344 HPRWMRGQRAADDGLGDSWIRVALGLREDLAKRIPRAEVEEMGRVVITELNNLEPGCVST 403
Query: 373 CGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFL---------------- 416
G YRRGK D+D+V HPD KG V++L E L
Sbjct: 404 IVGGYRRGKRESNDVDIVFTHPDASKVKGLCKSLVRRLHERVSLLTSFTDLSGFHTHDPL 463
Query: 417 -----------------------------REDLIFSTHSEEVYPRDIYAFGLIAWTGNDV 447
R DLIF+ ++Y +I WTG+ +
Sbjct: 464 RLHHWDNLEKALTVFILPPTSPFYDGTRRRLDLIFALP-------EVYWTAVIGWTGSIM 516
Query: 448 LNRRLRLLAESK-GYRLDDTGLFPATYGSGGKQGVRARTSLKF--DTEKEVFDFLGFPWL 504
R +R A+ K G + D +G+ R S +F TEKEVF+ LG W+
Sbjct: 517 FQRDIRQWAKDKLGMKFDSSGI------------TRRYDSKEFYPKTEKEVFELLGLQWV 564
Query: 505 EPHERN 510
+P RN
Sbjct: 565 DPTWRN 570
>gi|351697151|gb|EHB00070.1| DNA polymerase mu [Heterocephalus glaber]
Length = 493
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 97/420 (23%), Positives = 175/420 (41%), Gaps = 81/420 (19%)
Query: 162 ETNALSEAPNSPMSS----ESLTNTLSTASASPDFSSHHITDPSLLYNPPDL-------- 209
+ N + P P + T +++ P H + + L PP+
Sbjct: 83 QENEAAPPPGCPRPALLDISWFTESMAAGQPVPVEGRHRLEEAELRKGPPNPAAMPAYAC 142
Query: 210 ---------NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLP 260
N +++E L G + R S+ +A V+ LP+ + Q++GLP
Sbjct: 143 QRSTPLMHHNSSLSEALETLAEAAGFEGSEGRLLSFCRAASVLRALPWPVTVLSQLQGLP 202
Query: 261 GIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLD 320
G+ +QE++ G +++ E+ RT+ LF +V+G+G TA + Y++G RTLD
Sbjct: 203 NFGEHSSRIVQELLERGVCEEVKRVRSSERYRTMKLFTQVFGVGVKTANRWYQEGLRTLD 262
Query: 321 DLKNEDS-LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRR 379
+L+ + LT QR GL++ D+ T + R + E ++RL++ + LP ++ G +RR
Sbjct: 263 ELREQPQRLTRQQRAGLQHHRDLCTPVGRPDAEALQRLVEATVGQALPGATVMLTGGFRR 322
Query: 380 GKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFL------------REDLIFSTHSE 427
GK D+D +I HP+ G L V +L+ + + L +H+
Sbjct: 323 GKLQGHDVDFLITHPEEGREVGLLPSVVCQLQSQGLVLYHQHQRSHLGDPDHLARQSHTM 382
Query: 428 EVYPRDI------------------------------------YAFGLIAWTGNDVLNRR 451
+ + R + + F L+ WTG+ + R
Sbjct: 383 DAFERSLCILRLLQPSQPAKGADSEPRPWRAVRVDLVVAPWSQFPFALLGWTGSKLFERD 442
Query: 452 LRLLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
LR + + KG L+ GLF ++ +E+++F LG +L P +RN
Sbjct: 443 LRRFSRKEKGLCLNSHGLF----------DPEQKSCFHVASEEDIFRHLGLAYLPPEQRN 492
>gi|20067691|emb|CAD29087.1| chimeric DNA-directed DNA polymerase bf4-13 [synthetic construct]
Length = 326
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 105/326 (32%), Positives = 174/326 (53%), Gaps = 35/326 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI------ILCGGSYRRG 380
L H QR+GLKYF+D + I ++ + L + E ++I I+ GS RR
Sbjct: 131 KLNHHQRIGLKYFEDFEKLIQGKKI--VNHLRSRLAFEYNGQLIKILSKNIVAVGSLRRE 188
Query: 381 KASCGDLDVVIMHPDRKSHKG------FLSKYVKKLKEMKFLREDLIFSTHSEEVYP--- 431
+ D+D++I+ P++K K F++ + K E KF+ + S + E YP
Sbjct: 189 EKMLNDVDLLIIVPEKKLLKHVLPNIRFITDTLSK-GETKFMGVCQLPSENDENEYPHRR 247
Query: 432 ---RDIYA----FGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRAR 484
R I A + + +TG ++ +R+ A KG+ +++ + P G GV A
Sbjct: 248 IDIRLIPAEEKPYAIFHFTGP--VSYLIRIRAALKGFTINEYTIRPL-----GVTGV-AG 299
Query: 485 TSLKFDTEKEVFDFLGFPWLEPHERN 510
L D+E+++FD++ + + EP +R+
Sbjct: 300 EPLPVDSEQDIFDYIQWRYREPKDRS 325
>gi|307209304|gb|EFN86389.1| DNA polymerase beta [Harpegnathos saltator]
Length = 333
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 96/302 (31%), Positives = 151/302 (50%), Gaps = 36/302 (11%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
+Y A ++ LP +I++A + LPGIGK + DHI E + TG +L+ +KD+K I
Sbjct: 41 NYRNAAEMLSALPGRIKNAYEAMKLPGIGKKIADHINEFLETGTHKELQQVKKDDKQDAI 100
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDLK-NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQ 353
L ++ GIGPA A++L G TL+DLK +ED L QR+ LKYFDD + +I R E+ +
Sbjct: 101 ILLMKIPGIGPAKAEQLISAGIETLEDLKQHEDKLNRQQRIELKYFDDFEKKITRDEIMR 160
Query: 354 MERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSH------KGFLSKYV 407
+E L + A EE+ + ++ GSYRRG + V+ HPD KS+ + + +
Sbjct: 161 IENLFKDAIEELDNKYLVTFCGSYRRGLEDNEPIIAVVTHPDYKSNIKKKDTEITMKAIL 220
Query: 408 KKLKEMKFLREDLI-------------------FSTHSEEVYPRDIYAFGLIAWTGNDVL 448
+ L++ +RE + F + ++ D Y + +TG+++
Sbjct: 221 ECLEDKNLIRETISLGAITFMGACRLPRRKKGPFRRLNIQLVFYDHYYCAALYYTGSEIF 280
Query: 449 NRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHE 508
N+ +R A K Y L+ L T G + TS EK +FD LG + P
Sbjct: 281 NKVIRAHALEKKYILNKHTLKSVTTGK-----IEEITS-----EKSIFDILGLSYEFPQW 330
Query: 509 RN 510
RN
Sbjct: 331 RN 332
>gi|392560791|gb|EIW53973.1| Nucleotidyltransferase [Trametes versicolor FP-101664 SS1]
Length = 597
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 103/371 (27%), Positives = 160/371 (43%), Gaps = 92/371 (24%)
Query: 220 LINIYRAL-GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGK 278
+I RAL GEDR + SY +AI VI+ P KI S QV+ LP IG + + E + G
Sbjct: 236 IIRQSRALEGEDRSALSYQRAISVIKAYPEKIRSLKQVQKLPYIGVKISGLVDEYLDNGH 295
Query: 279 LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQ------ 332
+S+ + + E+ RT+SLF ++GIGP A++L+ G R+L DL+ + SQ
Sbjct: 296 ISEAQTIQSSERFRTLSLFTSIYGIGPHAARRLFALGLRSLADLEIYYGVERSQVQQSQI 355
Query: 333 -------------------------------RLGLKYFDDIKTRIPRHEVEQMERLLQKA 361
R+ L +D+ IPR EVE++ R++ +
Sbjct: 356 IEVEEKPRQAGWKGRDKKDKGDEEGLGDSWIRVALGLREDLSKMIPRDEVEEIGRVVMRE 415
Query: 362 GEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEM-------- 413
+ + P + G YRRGK D+D+V HPD KG ++VK L
Sbjct: 416 LDALEPGCVSTIVGGYRRGKPKSNDVDIVFTHPDAGKVKGLCKRFVKHLHGRGMVTHVMH 475
Query: 414 --KFLREDLIFSTHSEEV-----------------------------YPRDIYAFGLIAW 442
F D + +TH + + P ++Y ++ W
Sbjct: 476 LSSFHAHDPLRTTHWDTLEKSLTVFVLPPSSALNSSVPVRRRVDLIFAPPEVYWTAVVGW 535
Query: 443 TGNDVLNRRLRLLAESK-GYRLDDTGLFPATYGSGGKQGVRARTSLKF--DTEKEVFDFL 499
+G+ + R LR A+ + G + D +G+ R S +F TEKE F+ L
Sbjct: 536 SGSIMFQRDLRQWAKDRCGMKFDSSGI------------TRRYDSKEFHPKTEKEAFELL 583
Query: 500 GFPWLEPHERN 510
G W++P RN
Sbjct: 584 GLEWVDPVWRN 594
>gi|328868842|gb|EGG17220.1| phosphatase tensin type domain-containing protein [Dictyostelium
fasciculatum]
Length = 1026
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 95/334 (28%), Positives = 160/334 (47%), Gaps = 42/334 (12%)
Query: 208 DLNKNITEIFGKLINIYRALGE-DR-RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKS 265
+ N++IT + KL+ +ALG+ DR R ++Y +AI +++ L FK+ S+ + + GIG
Sbjct: 701 NYNESITSVLEKLLE--KALGDGDRWREYAYKRAIGILKGLTFKLSSSKDLGDIRGIGPK 758
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE 325
+++ I EI+ TG L ++E D + ++ G GP T + G ++ L+
Sbjct: 759 IREKIDEIIETGTLRRVESSLSDTTNQISQALLKIHGAGPNTVKNWMAAGVVSIQQLRQH 818
Query: 326 D-----SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRG 380
LT Q +GLKY++D TRIPR EV + +++ +E+ P +I+ GS+RR
Sbjct: 819 ILIDPLFLTSQQHIGLKYYEDFLTRIPRLEVINIVSIIENVVKELDPNIIMEVCGSFRRM 878
Query: 381 KASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLI------------------- 421
K CGD+D++ H + G L + KL+ + L + L
Sbjct: 879 KKDCGDIDILFTHSKGEILNGLLRRLTLKLESINLLTDHLTSVKSDSDKYMGVCRLGPDG 938
Query: 422 ------FSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS 475
F T S+E +P F L+ +TG+D NR +RL A G+ L ++ L
Sbjct: 939 LHRRIDFQTISKEEWP-----FALLYFTGSDHFNRSMRLWARRNGFSLSESHLVRRM--- 990
Query: 476 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
G + + EK++F LG + P +R
Sbjct: 991 GKNENEIKGDPIHASCEKDIFALLGLEYRHPQDR 1024
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 51/104 (49%), Gaps = 10/104 (9%)
Query: 9 PTPALDSNGIFAGMRVFLV-EKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLE 67
P P D I +F + +KG+ + I + K++ G T+ + ++ TH+L D
Sbjct: 411 PPPVPDRKIIMFKNNIFYINKKGIGRLQQNIIQTKIISNGGTICQHITTLTTHILVQDST 470
Query: 68 ALLQQVSKQHLARFKG-----SVIRY--QWLEDSLRLGEKVSED 104
+++ ++ + FK S++ Y WL S++ GEK+ +D
Sbjct: 471 SIIDPITLS--SDFKDLILSKSIVGYTINWLTLSIQKGEKIIDD 512
>gi|122920611|pdb|2IHM|A Chain A, Polymerase Mu In Ternary Complex With Gapped 11mer Dna
Duplex And Bound Incoming Nucleotide
gi|122920612|pdb|2IHM|B Chain B, Polymerase Mu In Ternary Complex With Gapped 11mer Dna
Duplex And Bound Incoming Nucleotide
Length = 360
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 89/331 (26%), Positives = 147/331 (44%), Gaps = 62/331 (18%)
Query: 232 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
R S+ +A V++ LP + S Q+ GLP G+ IQE++ G +++ E+
Sbjct: 39 RLLSFSRAASVLKSLPCPVASLSQLHGLPYFGEHSTRVIQELLEHGTCEEVKQVRCSERY 98
Query: 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSLTHSQRLGLKYFDDIKTRIPRHE 350
+T+ LF +V+G+G TA + Y++G RTLD+L+ + LT Q+ GL+Y+ D+ T + R +
Sbjct: 99 QTMKLFTQVFGVGVKTANRWYQEGLRTLDELREQPQRLTQQQKAGLQYYQDLSTPVRRAD 158
Query: 351 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 410
E +++L++ A + LP + G +RRGK D+D +I HP+ G L K + L
Sbjct: 159 AEALQQLIEAAVRQTLPGATVTLTGGFRRGKLQGHDVDFLITHPEEGQEVGLLPKVMSCL 218
Query: 411 KEM------KFLREDLIFSTHSEE------------------------------------ 428
+ ++ R L S H+
Sbjct: 219 QSQGLVLYHQYHRSHLADSAHNLRQRSSTMDVFERSFCILGLPQPQQAALAGALPPCPTW 278
Query: 429 --------VYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQ 479
V P + F L+ WTG+ R LR + + KG L+ GLF
Sbjct: 279 KAVRVDLVVTPSSQFPFALLGWTGSQFFERELRRFSRQEKGLWLNSHGLFDP-------- 330
Query: 480 GVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+ +E++VF LG +L P +RN
Sbjct: 331 --EQKRVFHATSEEDVFRLLGLKYLPPEQRN 359
>gi|348688553|gb|EGZ28367.1| hypothetical protein PHYSODRAFT_309246 [Phytophthora sojae]
Length = 475
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 128/206 (62%), Gaps = 4/206 (1%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
+LN ++T+ +++ + R + Y K + ++ + ++ S K + + ++
Sbjct: 254 NLNAHLTDPLEEMMEFLDVEKDIWRQYMYKKVVSSLKAMRHRVCSVKDFKDMHWVKGRLR 313
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
D + EI+ TG+L+KLE +K+ ++R + +WG+GP TA KLY +G+++++DL+ ++
Sbjct: 314 DKVIEILETGRLAKLEAKKKNPRLRALVEIARIWGVGPVTAAKLYGQGYKSVEDLRKPEA 373
Query: 328 ---LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 384
LT Q++G+K+++D+ T+IPR EV+Q+E+++ +++P I L GSYRRGK S
Sbjct: 374 AAVLTAQQQIGVKHYEDLLTKIPRAEVQQIEQIVVDEVHKLMPNAIALACGSYRRGKLSS 433
Query: 385 GDLDVVIMHPDRKSHKGFLSKYVKKL 410
GD DV++ PD +S+ L + +K+L
Sbjct: 434 GDCDVLVTDPDAESY-DILPQLLKRL 458
>gi|395508711|ref|XP_003758653.1| PREDICTED: DNA-directed DNA/RNA polymerase mu [Sarcophilus
harrisii]
Length = 530
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 97/353 (27%), Positives = 155/353 (43%), Gaps = 62/353 (17%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N TE L G + R S+ +A V++ LP I S Q++GLP G
Sbjct: 187 NLCFTEALDTLAEAAGFEGSEGRFLSFRRAASVLKALPGPITSISQLRGLPHFGDHSSRI 246
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED-SL 328
+QE++ G S++E ++ E+ +T+ LF ++G+G TA K Y G R+L DL+ + L
Sbjct: 247 VQELLECGVSSEVERIKQSERYQTMKLFTHIFGVGVKTADKWYRDGLRSLADLQGQTRKL 306
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
+ Q G+ +F+D+ T + RHE E ++R+++KA +VLP + G +RRGK D+D
Sbjct: 307 SRQQEAGICHFEDLNTLVWRHEAEAIQRVVEKAVRQVLPGATVTLTGGFRRGKLQGHDVD 366
Query: 389 VVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE-------------------- 428
+I HP +G L K + L+ F+ S H ++
Sbjct: 367 FLITHPVEGQEEGLLPKVMDLLESQGFVLYRHTQSNHYQDLKDPAQSTSLFDAYERCFSI 426
Query: 429 ------------------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAES 458
V P +AF L+ WTG+ R LR + +
Sbjct: 427 LRLPDPTAAFRPEAGEEPCRDGKAVRVDLVVAPASQFAFALLGWTGSQHFERELRRFSRA 486
Query: 459 -KGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
K L+ GL Y G K+ S +E+++F LG ++ P RN
Sbjct: 487 EKQLLLNSHGL----YVPGKKE------SFPAASEEDIFRHLGLEYIAPEYRN 529
>gi|336264419|ref|XP_003346986.1| hypothetical protein SMAC_05184 [Sordaria macrospora k-hell]
Length = 819
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 117/202 (57%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N E+ + + Y + + R+ +Y KAI +++ KI +A++ LP +GK + +
Sbjct: 465 NARTIEVLQLMCDCYSRISDHWRTTAYRKAISTLKRQNTKITTAEEAYRLPNVGKRLAEK 524
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EIVTT L +LE+ + ++ F +++ +G A K KG RTLDDLK + +LT
Sbjct: 525 IEEIVTTDSLRRLEYAQDSPLDHVLATFLKIYDVGTGRANKWISKGFRTLDDLKQKANLT 584
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+QR+G+++++D+ TRIPR EV + ++K ++ P V +L GGSYRRG S D+D
Sbjct: 585 PNQRIGIEHYEDLNTRIPRSEVAALGDYIKKEAAQIDPIVELLIGGSYRRGAESSRDVDF 644
Query: 390 VIMHPDRKSHKGFLSKYVKKLK 411
++ D S ++ + + LK
Sbjct: 645 IVTKKDTTSSADLVAFFERLLK 666
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 16/89 (17%)
Query: 429 VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLK 488
+ P Y LI +TGND+ NR +RLLA KG RL+ GL+ K+ +R R +K
Sbjct: 737 LVPETEYGAALIYFTGNDIFNRSMRLLASKKGMRLNQRGLY--------KEVMRGRDRVK 788
Query: 489 FDT--------EKEVFDFLGFPWLEPHER 509
E+++F+ LG W EP ER
Sbjct: 789 VTQGELVEGRDERKIFEILGVNWREPEER 817
>gi|403278452|ref|XP_003930819.1| PREDICTED: DNA-directed DNA/RNA polymerase mu isoform 1 [Saimiri
boliviensis boliviensis]
Length = 494
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 89/351 (25%), Positives = 157/351 (44%), Gaps = 60/351 (17%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N ++TE L G + R ++ +A V++ LP + + Q++GLP +G+
Sbjct: 153 NTSLTEALETLAEAAGFEGSEGRLLAFCRAASVLKALPSPVTTLSQLQGLPQLGEHSSRV 212
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 328
+QE++ G ++E E+ +T+ LF +V+G+G TA + Y +G RTLDDL+ + L
Sbjct: 213 VQELLEHGVCEEVERVRHSERYQTMKLFTQVFGVGVRTADRWYREGLRTLDDLQEQPQKL 272
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
T Q++GL++ D+ T + R +V+ +++ +++A + +P + G +RRGK D+D
Sbjct: 273 TQQQKVGLQHHQDLSTPVLRSDVDALQQAVEEAVAQAMPGATVTLTGGFRRGKLQGHDVD 332
Query: 389 VVIMHPDRKSHKGFLSKYVKKLKEM--------------------------KFLREDLIF 422
+I HP G L + + +L++ F R IF
Sbjct: 333 FLITHPKEGQEAGLLPRVMHRLQDQGLILYHQHHHSHWESPTRLAQQSHMDAFERSFCIF 392
Query: 423 STHSEE----------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESK 459
V P + F L+ WTG+ + R LR + + K
Sbjct: 393 RLPQAPGAAAGGTPRSCPSWKAVRVDLVVVPISQFPFALLGWTGSKLFQRELRRFSRKEK 452
Query: 460 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
G L+ GLF +T +E+++F LG +L P +RN
Sbjct: 453 GLWLNSHGLF----------DPEQKTFFHASSEEDIFRHLGLEYLPPEQRN 493
>gi|148708613|gb|EDL40560.1| polymerase (DNA directed), mu, isoform CRA_a [Mus musculus]
Length = 360
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 89/331 (26%), Positives = 147/331 (44%), Gaps = 62/331 (18%)
Query: 232 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
R S+ +A V++ LP + S Q+ GLP G+ IQE++ G +++ E+
Sbjct: 39 RLLSFSRAASVLKSLPCPVASLSQLHGLPYFGEHSTRVIQELLEHGTCEEVKQVRCSERY 98
Query: 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSLTHSQRLGLKYFDDIKTRIPRHE 350
+T+ LF +V+G+G TA + Y++G RTLD+L+ + LT Q+ GL+Y+ D+ T + R +
Sbjct: 99 QTMKLFTQVFGVGVKTANRWYQEGLRTLDELREQPQRLTQQQKAGLQYYQDLSTPVRRAD 158
Query: 351 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 410
E +++L++ A + LP + G +RRGK D+D +I HP+ G L K + L
Sbjct: 159 AEALQQLIEAAVRQTLPGATVTLTGGFRRGKLQGHDVDFLITHPEEGQEVGLLPKVMSCL 218
Query: 411 KEM------KFLREDLIFSTHSEE------------------------------------ 428
+ ++ R L S H+
Sbjct: 219 QSQGLVLYHQYHRSHLADSAHNLRQRSSTMDAFERSFCILGLPQPQQAALAGALPPCPTW 278
Query: 429 --------VYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQ 479
V P + F L+ WTG+ R LR + + KG L+ GLF
Sbjct: 279 KAVRVDLVVTPSSQFPFALLGWTGSQFFERELRRFSRQEKGLWLNSHGLFDP-------- 330
Query: 480 GVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+ +E++VF LG +L P +RN
Sbjct: 331 --EQKRVFHATSEEDVFRLLGLKYLPPEQRN 359
>gi|226423875|ref|NP_059097.2| DNA-directed DNA/RNA polymerase mu [Mus musculus]
gi|408360062|sp|Q9JIW4.2|DPOLM_MOUSE RecName: Full=DNA-directed DNA/RNA polymerase mu; Short=Pol Mu;
AltName: Full=Terminal transferase
gi|148708614|gb|EDL40561.1| polymerase (DNA directed), mu, isoform CRA_b [Mus musculus]
Length = 496
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 89/331 (26%), Positives = 147/331 (44%), Gaps = 62/331 (18%)
Query: 232 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
R S+ +A V++ LP + S Q+ GLP G+ IQE++ G +++ E+
Sbjct: 175 RLLSFSRAASVLKSLPCPVASLSQLHGLPYFGEHSTRVIQELLEHGTCEEVKQVRCSERY 234
Query: 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-LTHSQRLGLKYFDDIKTRIPRHE 350
+T+ LF +V+G+G TA + Y++G RTLD+L+ + LT Q+ GL+Y+ D+ T + R +
Sbjct: 235 QTMKLFTQVFGVGVKTANRWYQEGLRTLDELREQPQRLTQQQKAGLQYYQDLSTPVRRAD 294
Query: 351 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 410
E +++L++ A + LP + G +RRGK D+D +I HP+ G L K + L
Sbjct: 295 AEALQQLIEAAVRQTLPGATVTLTGGFRRGKLQGHDVDFLITHPEEGQEVGLLPKVMSCL 354
Query: 411 KEM------KFLREDLIFSTHSEE------------------------------------ 428
+ ++ R L S H+
Sbjct: 355 QSQGLVLYHQYHRSHLADSAHNLRQRSSTMDAFERSFCILGLPQPQQAALAGALPPCPTW 414
Query: 429 --------VYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQ 479
V P + F L+ WTG+ R LR + + KG L+ GLF
Sbjct: 415 KAVRVDLVVTPSSQFPFALLGWTGSQFFERELRRFSRQEKGLWLNSHGLF---------- 464
Query: 480 GVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+ +E++VF LG +L P +RN
Sbjct: 465 DPEQKRVFHATSEEDVFRLLGLKYLPPEQRN 495
>gi|6746423|gb|AAF27552.1|AF176098_1 DNA polymerase mu [Mus musculus]
Length = 496
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 89/331 (26%), Positives = 147/331 (44%), Gaps = 62/331 (18%)
Query: 232 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
R S+ +A V++ LP + S Q+ GLP G+ IQE++ G +++ E+
Sbjct: 175 RLLSFSRAASVLKSLPCPVASLSQLHGLPYFGEHSTRVIQELLEHGTCEEVKQVRCSERY 234
Query: 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-LTHSQRLGLKYFDDIKTRIPRHE 350
+T+ LF +V+G+G TA + Y++G RTLD+L+ + LT Q+ GL+Y+ D+ T + R +
Sbjct: 235 QTMKLFTQVFGVGVKTANRWYQEGLRTLDELREQPQRLTQQQKAGLQYYQDLSTPVRRAD 294
Query: 351 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 410
E +++L++ A + LP + G +RRGK D+D +I HP+ G L K + L
Sbjct: 295 AEALQQLIEAAVRQTLPGATVTLTGGFRRGKLQGHDVDFLITHPEEGQEVGLLPKVMSCL 354
Query: 411 KEM------KFLREDLIFSTHSEE------------------------------------ 428
+ ++ R L S H+
Sbjct: 355 QSQGLVLYHQYHRSHLADSAHNLRQRSSTMDAFERSFCILGLPQPQQAALAGALPPCPTW 414
Query: 429 --------VYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQ 479
V P + F L+ WTG+ R LR + + KG L+ GLF
Sbjct: 415 KAVRVDLVVTPSSQFPFALLGWTGSQFFERELRRFSRQEKGLWLNSHGLF---------- 464
Query: 480 GVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+ +E++VF LG +L P +RN
Sbjct: 465 DPEQKRVFHATSEEDVFRLLGLKYLPPEQRN 495
>gi|426356073|ref|XP_004045416.1| PREDICTED: DNA-directed DNA/RNA polymerase mu isoform 1 [Gorilla
gorilla gorilla]
Length = 494
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 90/351 (25%), Positives = 160/351 (45%), Gaps = 60/351 (17%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N ++E L G + R ++ +A V++ LP + + Q++GLP G+
Sbjct: 153 NTGLSEALETLAEAAGFEGSEGRLLTFCRAASVLKALPSPVTTLSQLQGLPHFGEHSSRV 212
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 328
+QE++ G ++E + E+ +T+ LF +++G+G TA + Y +G RTLDDL+ + L
Sbjct: 213 VQELLEHGVCEEVERVRRSERYQTMKLFTQIFGVGVKTADRWYREGLRTLDDLREQPQKL 272
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
T Q+ GL++ D+ T + R +V+ +++++++A + LP + G +RRGK D+D
Sbjct: 273 TQQQKAGLQHHQDLSTPVLRSDVDALQQVVEEAVGQALPGATVTLTGGFRRGKLQGHDVD 332
Query: 389 VVIMHPDRKSHKGFLSKYVKKLKEM--------------------------KFLREDLIF 422
+I HP G L + +++L++ F R IF
Sbjct: 333 FLITHPKEGQEAGLLPRVMRRLQDQGLILYHQHQHSCWESPTRLAQQSHMDAFERSFCIF 392
Query: 423 ------------STHSEE----------VYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESK 459
ST V P + F L+ WTG+ + R LR + + K
Sbjct: 393 RLPQPPGAAVGGSTRPCPSWKAMRVDLVVAPVSQFPFALLGWTGSKLFQRELRRFSRKEK 452
Query: 460 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
G L+ GLF +T + +E+++F LG +L P +RN
Sbjct: 453 GLWLNSHGLF----------DPEQKTFFQAASEEDIFRHLGLEYLPPEQRN 493
>gi|348560142|ref|XP_003465873.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed DNA/RNA polymerase
mu-like [Cavia porcellus]
Length = 500
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 88/349 (25%), Positives = 156/349 (44%), Gaps = 58/349 (16%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N +++E L G + R S+ +A V++ LP+ + Q++GLP G+
Sbjct: 161 NSSLSEALETLAEAAGFEGSEGRLLSFRRAASVLKALPWPVTELSQLQGLPHFGEHSTSV 220
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED-SL 328
IQE++ G ++E E+ RT+ LF +++G+G TA + Y++G RTLD+L+ + L
Sbjct: 221 IQELLERGVCEEVERVRCSERYRTMKLFTQIFGVGVKTANQWYQEGLRTLDELQEQPRRL 280
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
T Q+ GL++ D+ T R + E +++L++ + LP + G +RRGK D+D
Sbjct: 281 TRQQQAGLQHHLDLCTPXGRPDAEALQQLVEATVRQALPGATVTLTGGFRRGKPQGHDVD 340
Query: 389 VVIMHPDRKSHKGFLSKYVKKLKEMKFL------------REDLIFSTHSEEVYPRDI-- 434
+I HP+ G L +++L+ + L +H+ + + R +
Sbjct: 341 FLITHPEEGREAGLLPSVLRQLQSQDLVLYHQHQRSRLGDPSRLAQQSHTMDAFERSLCI 400
Query: 435 --------------------------------YAFGLIAWTGNDVLNRRLRLLA-ESKGY 461
+ F L+ WTG+ + R LR + + KG
Sbjct: 401 LRLPLPSKGADPESQPAWKAVRVDLVVTPWSQFPFALLGWTGSQLFERELRRFSRKEKGL 460
Query: 462 RLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
L+ GLF RT +E+++F LG +L P +RN
Sbjct: 461 CLNSHGLF----------DPEQRTCFHVASEEDIFRHLGLTYLPPEQRN 499
>gi|6851052|emb|CAB71154.1| DNA polymerase mu [Mus musculus]
Length = 496
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 89/331 (26%), Positives = 147/331 (44%), Gaps = 62/331 (18%)
Query: 232 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
R S+ +A V++ LP + S Q+ GLP G+ IQE++ G +++ E+
Sbjct: 175 RLLSFSRAASVLKSLPCPVASLSQLHGLPYFGEHSTRVIQELLEHGTCEEVKQVRCSERY 234
Query: 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-LTHSQRLGLKYFDDIKTRIPRHE 350
+T+ LF +V+G+G TA + Y++G RTLD+L+ + LT Q+ GL+Y+ D+ T + R +
Sbjct: 235 QTMKLFTQVFGVGVKTANRWYQEGLRTLDELREQPQRLTQQQKAGLQYYQDLSTPVRRAD 294
Query: 351 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 410
E +++L++ A + LP + G +RRGK D+D +I HP+ G L K + L
Sbjct: 295 AEALQQLIEAAVRQTLPGATVTLTGGFRRGKLQGHDVDFLITHPEEGQEVGLLPKVMSCL 354
Query: 411 KEM------KFLREDLIFSTHSEE------------------------------------ 428
+ ++ R L S H+
Sbjct: 355 QSQGLVLYHQYHRSHLADSAHNLRQRSSTMDVFERSFCILGLPQPQQAALAGALPPCPTW 414
Query: 429 --------VYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQ 479
V P + F L+ WTG+ R LR + + KG L+ GLF
Sbjct: 415 KAVRVDLVVTPSSQFPFALLGWTGSQFFERELRRFSRQEKGLWLNSHGLF---------- 464
Query: 480 GVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+ +E++VF LG +L P +RN
Sbjct: 465 DPEQKRVFHATSEEDVFRLLGLKYLPPEQRN 495
>gi|380093161|emb|CCC09399.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 843
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 117/202 (57%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N E+ + + Y + + R+ +Y KAI +++ KI +A++ LP +GK + +
Sbjct: 489 NARTIEVLQLMCDCYSRISDHWRTTAYRKAISTLKRQNTKITTAEEAYRLPNVGKRLAEK 548
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EIVTT L +LE+ + ++ F +++ +G A K KG RTLDDLK + +LT
Sbjct: 549 IEEIVTTDSLRRLEYAQDSPLDHVLATFLKIYDVGTGRANKWISKGFRTLDDLKQKANLT 608
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+QR+G+++++D+ TRIPR EV + ++K ++ P V +L GGSYRRG S D+D
Sbjct: 609 PNQRIGIEHYEDLNTRIPRSEVAALGDYIKKEAAQIDPIVELLIGGSYRRGAESSRDVDF 668
Query: 390 VIMHPDRKSHKGFLSKYVKKLK 411
++ D S ++ + + LK
Sbjct: 669 IVTKKDTTSSADLVAFFERLLK 690
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 16/89 (17%)
Query: 429 VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLK 488
+ P Y LI +TGND+ NR +RLLA KG RL+ GL+ K+ +R R +K
Sbjct: 761 LVPETEYGAALIYFTGNDIFNRSMRLLASKKGMRLNQRGLY--------KEVMRGRDRVK 812
Query: 489 FDT--------EKEVFDFLGFPWLEPHER 509
E+++F+ LG W EP ER
Sbjct: 813 VTQGELVEGRDERKIFEILGVNWREPEER 841
>gi|332865053|ref|XP_001142835.2| PREDICTED: DNA-directed DNA/RNA polymerase mu isoform 4 [Pan
troglodytes]
Length = 494
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 90/351 (25%), Positives = 160/351 (45%), Gaps = 60/351 (17%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N ++E L G + R ++ +A V++ LP + + Q++GLP G+
Sbjct: 153 NTGLSEALETLAEAAGFEGSEGRLLTFCRAASVLKALPSPVTTLSQLQGLPHFGEHSSRV 212
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 328
+QE++ G ++E ++ E+ +T+ LF +++G+G TA + Y +G RTLDDL+ + L
Sbjct: 213 VQELLEHGVCEEVERVQRSERYQTMKLFTQIFGVGVKTADRWYREGLRTLDDLREQPQKL 272
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
T Q+ GL++ D+ T + R +V+ +++++++A + LP + G +RRGK D+D
Sbjct: 273 TQQQKAGLQHHQDLSTPVLRSDVDALQQVVEEAVGQALPGATVTLTGGFRRGKLQGHDVD 332
Query: 389 VVIMHPDRKSHKGFLSKYVKKLKEM--------------------------KFLREDLIF 422
+I HP G L + + +L++ F R IF
Sbjct: 333 FLITHPKEGQEAGLLPRVMCRLQDQGLILYHQHQHSCWESPTRLAQQSHMDAFERSFCIF 392
Query: 423 ------------STHSEE----------VYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESK 459
ST V P + F L+ WTG+ + R LR + + K
Sbjct: 393 RLPQPPGAAVGGSTRPCPSWKAVRVDLVVAPVSQFPFALLGWTGSKLFQRELRRFSRKEK 452
Query: 460 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
G L+ GLF +T + +E+++F LG +L P +RN
Sbjct: 453 GLWLNSHGLF----------DPEQKTFFQAASEEDIFRHLGLEYLPPEQRN 493
>gi|226290277|gb|EEH45761.1| DNA polymerase beta [Paracoccidioides brasiliensis Pb18]
Length = 599
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 112/182 (61%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N EI +++ Y + + R+ +Y +AI + K KI + DQ +P IG+ +
Sbjct: 387 NARTIEILQQMLEYYNRISDRWRTLAYRRAISALRKQKHKIVTKDQALAIPCIGEQLASK 446
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EIV T +L +LE + + + +S F ++G+G A K +KG+++L+DLK++ SLT
Sbjct: 447 IEEIVWTNRLRRLEEAKMEPQDMILSKFLNIYGVGFTQASKWIQKGYQSLEDLKSKASLT 506
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+QR+G++++DD RIPR EVE ++++A V P V + GGSYRRG +S GD+D+
Sbjct: 507 KNQRIGIEHYDDFMQRIPRAEVEAHVAIVKEAICNVDPAVQVFIGGSYRRGASSSGDIDL 566
Query: 390 VI 391
+I
Sbjct: 567 LI 568
>gi|397467153|ref|XP_003805291.1| PREDICTED: DNA-directed DNA/RNA polymerase mu isoform 1 [Pan
paniscus]
gi|410253858|gb|JAA14896.1| polymerase (DNA directed), mu [Pan troglodytes]
gi|410301512|gb|JAA29356.1| polymerase (DNA directed), mu [Pan troglodytes]
Length = 494
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/351 (25%), Positives = 158/351 (45%), Gaps = 60/351 (17%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N ++E L G + R ++ +A V++ LP + + Q++GLP G+
Sbjct: 153 NTGLSEALETLAEAAGFEGSEGRLLTFCRAASVLKALPSPVTTLSQLQGLPHFGEHSSRV 212
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 328
+QE++ G ++E ++ E+ +T+ LF +++G+G TA + Y +G RTLDDL+ + L
Sbjct: 213 VQELLEHGVCEEVERVQRSERYQTMKLFTQIFGVGVKTADRWYREGLRTLDDLREQPQKL 272
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
T Q+ GL++ D+ T + R +V+ +++++++A + LP + G +RRGK D+D
Sbjct: 273 TQQQKAGLQHHQDLSTPVLRSDVDALQQVVEEAVGQALPGATVTLTGGFRRGKLQGHDVD 332
Query: 389 VVIMHPDRKSHKGFLSKYVKKLKEM--------------------------KFLREDLIF 422
+I HP G L + + +L++ F R IF
Sbjct: 333 FLITHPKEGQEAGLLPRVMCRLQDQGLILYHQHQHSCWESPTRLAQQSHMDAFERSFCIF 392
Query: 423 STHSEE----------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESK 459
V P + F L+ WTG+ + R LR + + K
Sbjct: 393 RLPQPPGAAVGGSTRPCPSWKAVRVDLVVAPVSQFPFALLGWTGSKLFQRELRRFSRKEK 452
Query: 460 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
G L+ GLF +T + +E+++F LG +L P +RN
Sbjct: 453 GLWLNSHGLF----------DPEQKTFFQAASEEDIFRHLGLEYLPPEQRN 493
>gi|225682831|gb|EEH21115.1| DNA polymerase lambda [Paracoccidioides brasiliensis Pb03]
Length = 351
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 112/182 (61%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N EI +++ Y + + R+ +Y +AI + K KI + DQ +P IG+ +
Sbjct: 139 NARTIEILQQMLEYYNRISDRWRTLAYRRAISALRKQKHKIVTKDQALAIPCIGEQLASK 198
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I+EIV T +L +LE + + + +S F ++G+G A K +KG+++L+DLK++ SLT
Sbjct: 199 IEEIVWTNRLRRLEEAKMEPQDMILSKFLNIYGVGFTQASKWIQKGYQSLEDLKSKASLT 258
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+QR+G++++DD RIPR EVE ++++A V P V + GGSYRRG +S GD+D+
Sbjct: 259 KNQRIGIEHYDDFMQRIPRAEVEAHVAIVKEAICNVDPAVQVFIGGSYRRGASSSGDIDL 318
Query: 390 VI 391
+I
Sbjct: 319 LI 320
>gi|334313404|ref|XP_003339896.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed DNA/RNA polymerase
mu-like [Monodelphis domestica]
Length = 497
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 93/351 (26%), Positives = 164/351 (46%), Gaps = 60/351 (17%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N ++TE L G R S+++A V++ LP I + Q+ GLP IG
Sbjct: 156 NFHLTEALETLAEAADFEGSQGRFISFHRAASVLKALPDPITNMSQLHGLPHIGDHSSRI 215
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSL 328
IQE++ G +++E + ++ +T+ LF +++G+G TA + Y++G RTLDDL K+ L
Sbjct: 216 IQELLEHGVSNEVETIKLSKRYQTMKLFTQIFGVGVKTADRWYQEGLRTLDDLQKHSRKL 275
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
T Q G+ +F+D+ T + RHE + +++++++ +++LP ++ G +RRGK D+D
Sbjct: 276 TRQQEAGIHHFEDLNTPVYRHEADAIQQIVEEVVQQMLPGARVILAGGFRRGKPHGHDVD 335
Query: 389 VVIMHPDRKSHKGFLSKYVKKLKEMKFL----------REDLIF---------------- 422
+I HP G LSK + +L+ + ++ F
Sbjct: 336 FLITHPVEGLEAGLLSKVMGRLESQGLVLYRHTQSPKNPDNTAFQSTAMDDYEKCFSILW 395
Query: 423 -------STHSEE---------------VYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESK 459
S+H E V P +AF L+ WTG+ R LR + K
Sbjct: 396 FPKSPTTSSHLEAGESSRDGKAVRVDFVVTPISQFAFALLGWTGSQYFERELRRFSLNEK 455
Query: 460 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
L++ GL+ + +L +E+++F LG ++ P +RN
Sbjct: 456 RLLLNNHGLY----------NPEKKETLPAASEEDIFKHLGLDYIPPEQRN 496
>gi|13992551|emb|CAC38040.1| DNA polymerase mu [Mus musculus]
Length = 496
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 89/331 (26%), Positives = 147/331 (44%), Gaps = 62/331 (18%)
Query: 232 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
R S+ +A V++ LP + S Q+ GLP G+ IQE++ G +++ E+
Sbjct: 175 RLLSFSRADSVLKSLPCPVASLSQLHGLPYFGEHSTRVIQELLEHGTCEEVKQVRCSERY 234
Query: 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-LTHSQRLGLKYFDDIKTRIPRHE 350
+T+ LF +V+G+G TA + Y++G RTLD+L+ + LT Q+ GL+Y+ D+ T + R +
Sbjct: 235 QTMKLFTQVFGVGVKTANRWYQEGLRTLDELREQPQRLTQQQKAGLQYYQDLSTPVRRAD 294
Query: 351 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 410
E +++L++ A + LP + G +RRGK D+D +I HP+ G L K + L
Sbjct: 295 AEALQQLIEAAVRQTLPGATVTLTGGFRRGKLQGHDVDFLITHPEEGQEVGLLPKVMSCL 354
Query: 411 KEM------KFLREDLIFSTHSEE------------------------------------ 428
+ ++ R L S H+
Sbjct: 355 QSQGLVLYHQYHRSHLADSAHNLRQRSSTMDAFERSFCILGLPQPQQAALAGALPPCPTW 414
Query: 429 --------VYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQ 479
V P + F L+ WTG+ R LR + + KG L+ GLF
Sbjct: 415 KAVRVDLVVTPSSQFPFALLGWTGSQFFERELRRFSRQEKGLWLNSHGLF---------- 464
Query: 480 GVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+ +E++VF LG +L P +RN
Sbjct: 465 DPEQKRVFHATSEEDVFRLLGLKYLPPEQRN 495
>gi|33440487|gb|AAH56213.1| Polymerase (DNA directed), mu [Mus musculus]
Length = 496
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 89/331 (26%), Positives = 147/331 (44%), Gaps = 62/331 (18%)
Query: 232 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
R S+ +A V++ LP + S Q+ GLP G+ IQE++ G +++ E+
Sbjct: 175 RLLSFSRAASVLKSLPCPVASLSQLHGLPYFGEHSTRVIQELLEHGTCEEVKQVRCSERY 234
Query: 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-LTHSQRLGLKYFDDIKTRIPRHE 350
+T+ LF +V+G+G TA + Y++G RTLD+L+ + LT Q+ GL+Y+ D+ T + R +
Sbjct: 235 QTMKLFTQVFGVGVKTANRWYQEGLRTLDELREQPQRLTQQQKAGLQYYQDLSTPVRRAD 294
Query: 351 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 410
E +++L++ A + LP + G +RRGK D+D +I HP+ G L K + L
Sbjct: 295 AEALQQLIEAAVRQTLPGATVTLTGGFRRGKLQGHDVDFLITHPEEGQEVGPLPKVMSCL 354
Query: 411 KEM------KFLREDLIFSTHSEE------------------------------------ 428
+ ++ R L S H+
Sbjct: 355 QSQGLVLYHQYHRSHLADSAHNLRQRSSTMDAFERSFCILGLPQPQQAALAGALPPCPTW 414
Query: 429 --------VYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQ 479
V P + F L+ WTG+ R LR + + KG L+ GLF
Sbjct: 415 KAVRVDLVVTPSSQFPFALLGWTGSQFFERELRRFSRQEKGLWLNSHGLF---------- 464
Query: 480 GVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+ +E++VF LG +L P +RN
Sbjct: 465 DPEQKRVFHATSEEDVFRLLGLKYLPPEQRN 495
>gi|367036979|ref|XP_003648870.1| hypothetical protein THITE_2106802 [Thielavia terrestris NRRL 8126]
gi|346996131|gb|AEO62534.1| hypothetical protein THITE_2106802 [Thielavia terrestris NRRL 8126]
Length = 613
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 107/196 (54%), Gaps = 2/196 (1%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
+Y AI I P+ I++A +V LPG G + QE TG++ + E D K+ +
Sbjct: 279 AYSSAIATIAAYPYTIQTAQEVARLPGCGSKIARLFQEFKDTGQIREAREDETDPKLAVL 338
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVE 352
LF +WG+ TA+ Y +G R LDD+ DSLT Q++G+KY+D+ +T+IPR EVE
Sbjct: 339 KLFYGIWGVAETTARDFYNRGWRDLDDIVEYGWDSLTRVQQIGVKYYDEFQTKIPRAEVE 398
Query: 353 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKE 412
+ + + + ++ G YRRGK GD+DVV+ HPD + F+ + V L+
Sbjct: 399 AIANTILEHANRIRQGFQMVIVGGYRRGKLESGDVDVVLSHPDEAATHNFVERIVVSLER 458
Query: 413 MKFLREDLIFSTHSEE 428
+++ L ST + E
Sbjct: 459 GRYITHTLSLSTANSE 474
>gi|294953719|ref|XP_002787904.1| DNA polymerase mu, putative [Perkinsus marinus ATCC 50983]
gi|239902928|gb|EER19700.1| DNA polymerase mu, putative [Perkinsus marinus ATCC 50983]
Length = 420
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 113/386 (29%), Positives = 176/386 (45%), Gaps = 88/386 (22%)
Query: 191 DFSSHHITD--PSLLYNPPDLNKNITEIFGKL-INIYRALG--EDRRSFSYYKAIPVIEK 245
D SS + D P+L D NK +++IF L N+ G ++ RS SY +A I+K
Sbjct: 51 DDSSRGVVDRKPTL-----DCNKKLSQIFRDLEANLRHNKGSSDEFRSRSYRRAADKIDK 105
Query: 246 LPFKIESADQVKGLP-----GIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEV 300
L + +++ V+ GIG I+E V TG + K E E+ I V
Sbjct: 106 LGYPLDTDAAVEHFASECGSGIGAKTMQKIREFVNTGSVKKAEVIGTAERAIGIRELTSV 165
Query: 301 WGIGPATAQKLYEKGHRTLDDLKNEDS---LTHSQRLGLKYFDDIKTRIPRHEVEQMERL 357
WG+G +TA+K Y G R++D L++ S L H+Q++GLKYF++ +IPR EVE++ +
Sbjct: 166 WGVGVSTAEKWYAMGIRSVDALRHSGSIEQLNHNQKIGLKYFEEFNCKIPRQEVEEISTV 225
Query: 358 LQKAGEEV-------LPEVIILCGGSYRRGKASCGDLDVVIMHPDRK----SHKGFLSKY 406
+ ++ L ++ GSYRRGKA CGD+D +I H R+ + LS
Sbjct: 226 VLAGVDQATRAKYGGLEHFNVVVCGSYRRGKAMCGDVDFLITHRSRQLTYTENAAILSSI 285
Query: 407 VKKLKE------------MKFLREDLIFSTHSEE----------------------VYPR 432
V L E L + HSEE + P+
Sbjct: 286 VSCLSEEGVAPSFPQARLTDHLNQYRQHQEHSEESSTSCIGLDDYQQFCQYFGVFQLSPK 345
Query: 433 DI-------------YAFGLIAWTGNDVLNRRLRLLAESK-GYRLDDTGLFPATYGSGGK 478
I Y + L+ +TG+ V NRR+R A++K G +++D G+F S G
Sbjct: 346 HIHRRVDIKVWSLREYPYALVHFTGSGVFNRRMRYYAKTKLGLKVNDHGIFR----SDG- 400
Query: 479 QGVRARTSLKFDTEKEVFDFLGFPWL 504
+ + TE++VFD L ++
Sbjct: 401 ------SCISCKTERDVFDCLNIKYM 420
>gi|358056929|dbj|GAA97279.1| hypothetical protein E5Q_03957 [Mixia osmundae IAM 14324]
Length = 735
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 93/330 (28%), Positives = 150/330 (45%), Gaps = 32/330 (9%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N++I ++ + + Y +R KA + + +I++ D+ L G+G+S
Sbjct: 406 NEDICQVLDGIHDAYDPKDTFQR-MGIRKAQSALRRSSVRIDTFDKAFALKGVGESNASK 464
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--- 326
I EI TG +L F + E T ++ +++G+G A+ Y+ G RTLDDL+
Sbjct: 465 IVEIARTGNHRRLTIFAR-EGQETKAMLNKIYGVGFRIAENWYKAGVRTLDDLRTNPLRY 523
Query: 327 --SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 384
L Q+LGL+Y+D++ R+ R E Q+ +Q V + GSYRRG+ +C
Sbjct: 524 GIKLNEGQQLGLQYYDELNQRMSRSEATQLYETIQNTCRRVDLRTQVHLMGSYRRGQPTC 583
Query: 385 GDLDVVIMHPDR--KSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEV------------- 429
GD+D+++ R ++H G + + + LKE +R DL +
Sbjct: 584 GDIDILVTRDTRDGRTHAGVIPRLLTLLKEGNIVRHDLSLPHDPNALDAKWMGLCSLPGG 643
Query: 430 ---------YPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP-ATYGSGGKQ 479
P + LI +TGND+ NR LRL A GY L+ GL+ K
Sbjct: 644 IHRRIDILGVPFEQLGAALIYFTGNDIFNRSLRLKARRMGYSLNQRGLYADLIRDHKTKL 703
Query: 480 GVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
V + TE+E+F L PW P +R
Sbjct: 704 KVTEGHIIASATEEEIFAILKVPWRPPDDR 733
>gi|7019493|ref|NP_037416.1| DNA-directed DNA/RNA polymerase mu [Homo sapiens]
gi|17366980|sp|Q9NP87.1|DPOLM_HUMAN RecName: Full=DNA-directed DNA/RNA polymerase mu; Short=Pol Mu;
AltName: Full=Terminal transferase
gi|6715109|gb|AAF26284.1|AF176097_1 DNA polymerase mu [Homo sapiens]
gi|6822168|emb|CAB65075.2| DNA polymerase mu [Homo sapiens]
gi|58102203|gb|AAW65376.1| polymerase (DNA directed), mu [Homo sapiens]
gi|119581526|gb|EAW61122.1| polymerase (DNA directed), mu, isoform CRA_c [Homo sapiens]
gi|119581527|gb|EAW61123.1| polymerase (DNA directed), mu, isoform CRA_c [Homo sapiens]
Length = 494
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 90/351 (25%), Positives = 159/351 (45%), Gaps = 60/351 (17%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N ++E L G + R ++ +A V++ LP + + Q++GLP G+
Sbjct: 153 NTGLSEALEILAEAAGFEGSEGRLLTFCRAASVLKALPSPVTTLSQLQGLPHFGEHSSRV 212
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 328
+QE++ G ++E + E+ +T+ LF +++G+G TA + Y +G RTLDDL+ + L
Sbjct: 213 VQELLEHGVCEEVERVRRSERYQTMKLFTQIFGVGVKTADRWYREGLRTLDDLREQPQKL 272
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
T Q+ GL++ D+ T + R +V+ +++++++A + LP + G +RRGK D+D
Sbjct: 273 TQQQKAGLQHHQDLSTPVLRSDVDALQQVVEEAVGQALPGATVTLTGGFRRGKLQGHDVD 332
Query: 389 VVIMHPDRKSHKGFLSKYVKKLKEM--------------------------KFLREDLIF 422
+I HP G L + + +L++ F R IF
Sbjct: 333 FLITHPKEGQEAGLLPRVMCRLQDQGLILYHQHQHSCCESPTRLAQQSHMDAFERSFCIF 392
Query: 423 ------------STHSEE----------VYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESK 459
ST V P + F L+ WTG+ + R LR + + K
Sbjct: 393 RLPQPPGAAVGGSTRPCPSWKAVRVDLVVAPVSQFPFALLGWTGSKLFQRELRRFSRKEK 452
Query: 460 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
G L+ GLF +T + +E+++F LG +L P +RN
Sbjct: 453 GLWLNSHGLF----------DPEQKTFFQAASEEDIFRHLGLEYLPPEQRN 493
>gi|20067675|emb|CAD29079.1| chimeric DNA-directed DNA polymerase bf4-1 [synthetic construct]
Length = 325
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 104/324 (32%), Positives = 170/324 (52%), Gaps = 32/324 (9%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHE--VEQMERLLQKAGEEVLPEVI---ILCGGSYRRGK 381
L H QR+GLKYF+D + R+ + + V + L L +++ I+ GS RR +
Sbjct: 131 KLNHHQRIGLKYFEDFEKRLIQGKKIVNHLRSRLAFEYNGQLIKILSKNIVAVGSLRREE 190
Query: 382 ASCGDLDVVIMHPDRKSHKG------FLSKYVKKLKEMKFLREDLIFSTHSEEVYPRDIY 435
D+D++I+ P++K K F++ + K E KF+ + S + E YP
Sbjct: 191 KMLNDVDLLIIVPEKKLLKHVLPNIRFITDTLSK-GETKFMGVCQLPSENDENEYPHRRI 249
Query: 436 AFGLIA---------WTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTS 486
LIA +TG R+R + G+ +++ + P G GV A
Sbjct: 250 DIRLIAEEKPYAIFHFTGPVSYLIRIR---AALGFTINEYTIRPL-----GVTGV-AGEP 300
Query: 487 LKFDTEKEVFDFLGFPWLEPHERN 510
L D+E+++FD++ + + EP +R+
Sbjct: 301 LPVDSEQDIFDYIQWRYREPKDRS 324
>gi|295669724|ref|XP_002795410.1| DNA polymerase beta [Paracoccidioides sp. 'lutzii' Pb01]
gi|226285344|gb|EEH40910.1| DNA polymerase beta [Paracoccidioides sp. 'lutzii' Pb01]
Length = 412
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 116/200 (58%), Gaps = 2/200 (1%)
Query: 192 FSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE 251
FS H D + P N EI ++ Y + R+ +Y KAI + K KI
Sbjct: 184 FSCMHKHDGHTDRDNP--NARTIEILLQMSEYYDRNSDRWRTLAYRKAISALRKRKHKIV 241
Query: 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 311
+ DQ +P IG+ + I+EIV T +L +LE + + + +S F ++G+G A K
Sbjct: 242 TKDQALAIPCIGERLASKIEEIVWTNRLRRLEEAKMEPQDMILSKFLNIYGVGFTQASKW 301
Query: 312 YEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII 371
+KG+++L+DLK++ SLT +QR+G++++DD RIPR EVE ++++A V P V +
Sbjct: 302 IQKGYQSLEDLKSKASLTKNQRIGIEHYDDFMQRIPRAEVEAHVAIVKEAICNVDPAVQV 361
Query: 372 LCGGSYRRGKASCGDLDVVI 391
GGSYRRG +S GD+D++I
Sbjct: 362 FVGGSYRRGASSSGDIDLII 381
>gi|20067687|emb|CAD29085.1| chimeric DNA-directed DNA polymerase bf4-11 [synthetic construct]
Length = 324
Score = 131 bits (330), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 104/325 (32%), Positives = 171/325 (52%), Gaps = 35/325 (10%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI------ILCGGSYRRG 380
L H QR+GLKYF+D + I ++ + L + E ++I I+ GS RR
Sbjct: 131 KLNHHQRIGLKYFEDFEKLIQGKKI--VNHLRSRLAFEYNGQLIKILSKNIVAVGSLRRE 188
Query: 381 KASCGDLDVVIMHPDRKSHKG-----FLSKYVKKLKEMKFLREDLIFSTHSEEVYP---- 431
+ D+D++I+ P++K K F++ + K E KF+ + S + E YP
Sbjct: 189 EKMLNDVDLLIIVPEKKLLKHVLPNRFITDTLSK-GETKFMGVCQLPSENDENEYPHRRI 247
Query: 432 --RDIYA----FGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRART 485
R I A + + +TG R+R + G+ +++ + P G GV A
Sbjct: 248 DIRLIPAEEKPYAIFHFTGPVSYLIRIR---AALGFTINEYTIRPL-----GVTGV-AGE 298
Query: 486 SLKFDTEKEVFDFLGFPWLEPHERN 510
L D+E+++FD++ + + EP +R+
Sbjct: 299 PLPVDSEQDIFDYIQWRYREPKDRS 323
>gi|147899762|ref|NP_001079251.1| DNA nucleotidylexotransferase [Xenopus laevis]
gi|1174629|sp|P42118.1|TDT_XENLA RecName: Full=DNA nucleotidylexotransferase; AltName: Full=Terminal
addition enzyme; AltName: Full=Terminal
deoxynucleotidyltransferase; Short=TDT; Short=Terminal
transferase
gi|494987|gb|AAA18493.1| terminal deoxynucleotidyl transferase [Xenopus laevis]
Length = 507
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 97/358 (27%), Positives = 159/358 (44%), Gaps = 65/358 (18%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
D N+ T+ F L + R+ ++ +A +I+ LPF I + +++GLP +G M+
Sbjct: 159 DTNRIFTDAFDILAEHFEFCENKGRTVAFLRASSLIKSLPFPITAMKELEGLPWLGDQMK 218
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED- 326
I+EI+ GK K+ +E+ ++ F V+G+G T+ K + G RTL+++KNE
Sbjct: 219 GIIEEILEEGKSYKVLEVMNEERYKSFKQFTSVFGVGLKTSDKWFRMGFRTLEEIKNEKE 278
Query: 327 -SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
LT Q+ GL Y++DI + + R E E E+L++ + +P+ I+ G +RRGK
Sbjct: 279 LKLTKMQKCGLLYYEDITSYVSRAEAETTEQLIKSIVWKFVPDAIVTLTGGFRRGKKKGH 338
Query: 386 DLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLR-EDLIFSTHSEE---------------- 428
D+D++I + K L + LK L ++I ST E
Sbjct: 339 DVDILITCARKGKEKNILHNTMSVLKNRGLLLFYNIIESTFDETKLPSRHVDALDHFQKC 398
Query: 429 -----------------------------------VYPRDIYAFGLIAWTGNDVLNRRLR 453
+ P + Y + L+ WTG+ R LR
Sbjct: 399 FTILKLPKRQMDIGNIIDPHECERKNWKAVRLDLVITPYEQYPYALLGWTGSRQFERDLR 458
Query: 454 LLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
A K LD+ GL+ T + LK + E+++F LG +LEP ERN
Sbjct: 459 RYATHEKRMMLDNHGLYDKTKNN----------FLKANNEEDIFKQLGLDYLEPWERN 506
>gi|46110028|ref|XP_382072.1| hypothetical protein FG01896.1 [Gibberella zeae PH-1]
Length = 594
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 93/357 (26%), Positives = 156/357 (43%), Gaps = 56/357 (15%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIG 263
NPP NK ++ ++ I R LGED +Y +I + P+ ++++ +V LPG G
Sbjct: 239 NPP--NKAFVKLLTEIRTI-RQLGEDDVGVRAYSTSIASVAAYPYPLKNSQEVARLPGCG 295
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 323
+ + TG+ +++ D ++ + +F ++WG+G ATA++ Y+KG R L DL
Sbjct: 296 DRIAELWHRWKETGESAEVREANADPRISVLKIFYDIWGVGAATAREFYQKGWRDLVDLV 355
Query: 324 NE--DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGK 381
++L+ SQ++G+KY+D+ + IPR EV + + K + P ++ G +RRGK
Sbjct: 356 EHGWNTLSRSQQIGVKYYDEFLSGIPRDEVASIGAAILKHARIIDPGFEMVIVGGHRRGK 415
Query: 382 ASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE------------- 428
GD+DVV+ H D +SK V L++ + L+ S H+ E
Sbjct: 416 QKSGDVDVVLSHRDESKTLHVISKIVVILEQAHLVTHTLVLSAHNSERGQRPVSWKGQTS 475
Query: 429 -------------------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAE 457
+ P ++ W+G R LR +
Sbjct: 476 SSSGFDTLDKALVVWKDPSKEDAPHRRVDIIISPWKTVGCAVLGWSGGTTFQRDLRQYCK 535
Query: 458 -SKGYRLDDTGLFPATYGSG----GKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
KGY+ D +G+ G G A ++ E+ VF LG PW P R
Sbjct: 536 YVKGYKFDSSGIRHRADGRWVDLEGTSADNAAPDME-TAERRVFGGLGLPWRPPEAR 591
>gi|125858157|gb|AAI29712.1| Dntt-A protein [Xenopus laevis]
Length = 500
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/358 (27%), Positives = 159/358 (44%), Gaps = 65/358 (18%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
D N+ T+ F L + R+ ++ +A +I+ LPF I + +++GLP +G M+
Sbjct: 152 DTNRIFTDAFDILAEHFEFCENKGRTVAFLRASSLIKSLPFPITAMKELEGLPWLGDQMK 211
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED- 326
I+EI+ GK K+ +E+ ++ F V+G+G T+ K + G RTL+++KNE
Sbjct: 212 GIIEEILEEGKSYKVLEVMNEERYKSFKQFTSVFGVGLKTSDKWFRMGFRTLEEIKNEKE 271
Query: 327 -SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
LT Q+ GL Y++DI + + R E E E+L++ + +P+ I+ G +RRGK
Sbjct: 272 LKLTKMQKCGLLYYEDITSYVSRAEAETTEQLIKSIVWKFVPDAIVTLTGGFRRGKKKGH 331
Query: 386 DLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLR-EDLIFSTHSEE---------------- 428
D+D++I + K L + LK L ++I ST E
Sbjct: 332 DVDILITCARKGKEKNILHNTMSVLKNRGLLLFYNIIESTFDETKLPSRHVDALDHFQKC 391
Query: 429 -----------------------------------VYPRDIYAFGLIAWTGNDVLNRRLR 453
+ P + Y + L+ WTG+ R LR
Sbjct: 392 FTILKLPKRQMDIGNIIDPHECERKNWKAVRLDLVITPYEQYPYALLGWTGSRQFERDLR 451
Query: 454 LLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
A K LD+ GL+ T + LK + E+++F LG +LEP ERN
Sbjct: 452 RYATHEKRMMLDNHGLYDKTKNN----------FLKANNEEDIFKQLGLDYLEPWERN 499
>gi|408395235|gb|EKJ74418.1| hypothetical protein FPSE_05383 [Fusarium pseudograminearum CS3096]
Length = 594
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 94/360 (26%), Positives = 156/360 (43%), Gaps = 62/360 (17%)
Query: 205 NPPDLNKNITEIFGKL---INIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLP 260
NPP+ E F KL I R LG+D +Y +I + P+ ++++ +V LP
Sbjct: 239 NPPN------EAFVKLLTEIRTIRQLGKDDVGVRAYSTSIASVAAYPYPLKNSQEVARLP 292
Query: 261 GIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLD 320
G G + + TG+ +++ D ++ + +F ++WG+G ATA++ Y+KG + LD
Sbjct: 293 GCGDRIAELWHRWKETGESAEVREANADPRISVLKIFYDIWGVGAATAREFYQKGWQDLD 352
Query: 321 DLKNE--DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYR 378
DL ++L+ SQ++G+KY+D+ + IPR EV + + K + P ++ G +R
Sbjct: 353 DLVEHGWNTLSRSQQIGVKYYDEFLSGIPRDEVASIGAAILKHARIIDPGFEMVIVGGHR 412
Query: 379 RGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE---------- 428
RGK GD+DVV+ H D +SK V L++ + L+ S H+ E
Sbjct: 413 RGKQESGDVDVVLSHRDESKTLHVISKIVVILEQAHLVTHTLVLSAHNSERGQRPVSWKG 472
Query: 429 ----------------------------------VYPRDIYAFGLIAWTGNDVLNRRLRL 454
+ P ++ W+G R LR
Sbjct: 473 QTSSSSGFDTLDKALVVWKDSSKEDAPHRRVDIIISPWKTVGCAVLGWSGGTTFQRDLRQ 532
Query: 455 LAE-SKGYRLDDTGLFPATYGSG----GKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ KGY+ D +G+ G G A ++ E+ VF LG PW P R
Sbjct: 533 YCKYVKGYKFDSSGIRHRADGRWVDLEGTSADNAAPDME-TAERRVFGGLGLPWRPPEAR 591
>gi|242007334|ref|XP_002424496.1| DNA polymerase beta, putative [Pediculus humanus corporis]
gi|212507914|gb|EEB11758.1| DNA polymerase beta, putative [Pediculus humanus corporis]
Length = 316
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 96/303 (31%), Positives = 148/303 (48%), Gaps = 53/303 (17%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
+Y +A + P KI S + LPGIGKS+ I + TGKL KLE +K+EK I
Sbjct: 39 AYRRAAFALANYPKKISSGREALKLPGIGKSIASKIDIYLKTGKLPKLEKIKKNEKFAAI 98
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQ 353
L +V GIGP+ A++L +G R+L DL K + LT QR+GLKYF D +IPR E+
Sbjct: 99 QLLTKVSGIGPSKARELVAQGIRSLKDLNKIKHKLTKHQRIGLKYFHDFLLKIPRSEISI 158
Query: 354 MERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD-----RKS----HKGFLS 404
+E+ L++ +EV D ++ HP+ RKS H L
Sbjct: 159 IEKTLKEEIKEV--------------------DNRYIVTHPNYTLNVRKSASSHHGSMLK 198
Query: 405 KYVKKLKEMKFLREDLIF-STHSEEVY----------------PRDIYAFGLIAWTGNDV 447
V+KL++ + + + +T VY P D Y ++ +TG+D+
Sbjct: 199 TVVEKLRDDDLVTDTIALGNTKFMGVYKLDEGSPARRLDIRMTPHDQYFCSILYFTGSDL 258
Query: 448 LNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPH 507
NR +R A +GY L++ L P T K GV + +E+++F ++ +P+ P
Sbjct: 259 FNRNMRAHALQQGYTLNEYSLRPIT-----KTGVPG-DPVPITSERDIFAYINYPYKPPS 312
Query: 508 ERN 510
ER+
Sbjct: 313 ERD 315
>gi|342886891|gb|EGU86588.1| hypothetical protein FOXB_02917 [Fusarium oxysporum Fo5176]
Length = 584
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 122/492 (24%), Positives = 201/492 (40%), Gaps = 85/492 (17%)
Query: 85 VIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVL------SQIQGNGNTSSDGESS 138
V++ WL DS E + D Y I +RVL + + G+TS
Sbjct: 108 VVKLSWLLDSWEKEELLPVDHYLIFQ-------CNRVLPRETTPAPVLPKGSTSPASSIL 160
Query: 139 HRKKIKS---STEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDF--S 193
R ++ ST Q + + DV T AP+ + ++ + T P+F +
Sbjct: 161 ERALLEQKAQSTSTSPSNQHKRRHDVSTTISQNAPS--LLHQTTSEHDITLPVMPEFLRT 218
Query: 194 SHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIES 252
++ P+ + NPP N+ I ++ I R L ED +Y +I I P+ +++
Sbjct: 219 TYSCQRPTYM-NPP--NEAFVNILTEIRTI-RQLREDEVGVRAYSTSIASIAAYPYALKN 274
Query: 253 ADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY 312
A +V LPG G + + TG+ ++ D K+ + LF +WG+G TA+ Y
Sbjct: 275 AQEVARLPGCGDRIAELWHYWKETGESVEVREANADPKITVLKLFYNIWGVGAVTARDFY 334
Query: 313 EKGHRTLDDLK--NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 370
KG R LDDL ++L+ SQ+LG+KY+++ IPR EV + + + + P
Sbjct: 335 RKGWRDLDDLVEFGWNTLSRSQQLGVKYYNEFLLGIPRDEVATIAAAILEHARLIDPGFE 394
Query: 371 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE-- 428
++ G YRRGK GD DVV+ H + +++ V L++ + + L STH+ +
Sbjct: 395 MVIVGGYRRGKQQSGDADVVLSHRNENKTLNVITQIVVALEKAQLITHTLTLSTHNSDRG 454
Query: 429 ------------------------------------------VYPRDIYAFGLIAWTGND 446
+ P ++ W+G
Sbjct: 455 QRPVSWKGEKSNSSGFDTLDKALVVWQDSSKKDAPHRRVDIIISPWKTVGCAVLGWSGGT 514
Query: 447 VLNRRLRLLAES-KGYRLDDTGLFPATYG--------SGGKQGVRARTSLKFDTEKEVFD 497
R +R + KGY+ D +G+ G SGG + T+ E+ VF
Sbjct: 515 TFQRDVRRYCKRVKGYKFDSSGIRHRADGRWVDLEGTSGGDEAPDMETA-----ERRVFA 569
Query: 498 FLGFPWLEPHER 509
LG W P ER
Sbjct: 570 GLGLQWRSPEER 581
>gi|254656359|gb|ACT76274.1| DNA-directed DNA polymerase beta, partial [Sebastiscus marmoratus]
Length = 216
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/217 (37%), Positives = 118/217 (54%), Gaps = 30/217 (13%)
Query: 276 TGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-EDSLTHSQRL 334
TGKL KLE D+ +I+ V GIGPA A+K +E+G +TL+DLK E+ L H Q++
Sbjct: 1 TGKLRKLEKIRNDDTSSSINFLTRVTGIGPAAARKFFEEGVKTLEDLKKIENKLNHHQQI 60
Query: 335 GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
GLKYF++ + RIPR E+E+ME L+ +E+ E I SYRRG AS GD+D+++ HP
Sbjct: 61 GLKYFEEFEKRIPRAEMEKMETLILAELKEISTEYIGTICRSYRRGAASSGDIDILLTHP 120
Query: 395 DRKSHK-----------------GFLSKYVKKLKEMKFL-REDLIFSTHSEEVY------ 430
D S GF++ + K + KF+ L S EE Y
Sbjct: 121 DYSSDTQKQPKLLHDVVEHFVSIGFVTDTLSK-GDTKFMGVCQLQQSDEDEEEYFHRRID 179
Query: 431 ----PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRL 463
P D Y G++ +TG+D+ N+ +R A KG+ L
Sbjct: 180 IRLIPNDQYYCGVLYFTGSDIFNKNMRTHALEKGFTL 216
>gi|164451472|ref|NP_001030363.2| DNA-directed DNA/RNA polymerase mu [Bos taurus]
Length = 488
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 88/349 (25%), Positives = 153/349 (43%), Gaps = 58/349 (16%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N +++E L G + R ++Y+A V++ LP + + Q++GLP G+
Sbjct: 149 NASLSEALETLAEAAGFDGSEGRQIAFYRAASVLKALPSPVTALSQLQGLPHFGEHSCRV 208
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-L 328
+QE++ G ++E E+ +T+ LF +++G+G TA + Y KG RTL DL+ E L
Sbjct: 209 VQELLEHGVCDEVERVRLSERYQTMKLFTQIFGVGVRTADQWYRKGLRTLADLREESQRL 268
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
T Q+ GL++ D+ I R +VE +++ ++ A + LP + G +RRGK D+D
Sbjct: 269 TQQQKAGLQHHQDLSAPILRSDVEALQQEVEAAVRQALPGATVTLAGGFRRGKLQGHDVD 328
Query: 389 VVIMHPDRKSHKGFLSKYVKKLKEMKFL---------REDLIFSTHSEEVYPRDI----- 434
+I HP G L + + LK+ + + DL +H+ + + R
Sbjct: 329 FLITHPQEGQEAGLLPRVMCYLKKQGLVLYHQHQHSQQGDLTQQSHTMDAFERSFCIFRL 388
Query: 435 --------------------------------YAFGLIAWTGNDVLNRRLRLLA-ESKGY 461
+ F L+ WTG+ R LR + + +G
Sbjct: 389 PQPPGAAVGGAQKPCYAWKAVRVDLVVAPISQFPFALLGWTGSKHFERELRRFSRKERGL 448
Query: 462 RLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
L+ GLF +T +E+++F L +L P RN
Sbjct: 449 CLNSHGLF----------DPEQKTVFHVASEEDIFRLLDLEYLPPELRN 487
>gi|310790620|gb|EFQ26153.1| hypothetical protein GLRG_01297 [Glomerella graminicola M1.001]
Length = 602
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 91/337 (27%), Positives = 147/337 (43%), Gaps = 66/337 (19%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
+Y +I I P+ I +V LPG G + + E G+L + + + D K+ I
Sbjct: 267 AYSTSIATISAYPYVIAIRQEVARLPGCGVKIAELWHEWEKAGRLREADEAQADSKLSVI 326
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRHEVE 352
F ++WG+G TA+ Y +G R LDD+ DSL+ Q++G+KY+D+ K +IPR EV
Sbjct: 327 QTFYDIWGVGDTTARDFYSRGWRDLDDVVEHGWDSLSRVQQIGVKYYDEFKLKIPRTEVR 386
Query: 353 QM-ERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLK 411
+ + +L A + L +++ GG YRRGK GD+DVVI HPD + + K V L+
Sbjct: 387 DIADTILAHARKINLGFQLVIVGG-YRRGKQGSGDVDVVISHPDESATMHIVEKLVVSLE 445
Query: 412 EMKFLREDLIFSTHSEE------------------------------------------- 428
+ + + L+ S H+ E
Sbjct: 446 KSQHITHSLMLSNHNSERRQRPVSWKGNESIGSGFDTLDKALVVWQKPETKTKACSSEAE 505
Query: 429 ----------VYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGS-- 475
+ P ++ W+G+ R LR + KG++ D +G+ GS
Sbjct: 506 ERTHRRVDIVISPWKTAGCAILGWSGDMTFQRDLRRYCRKQKGFKFDSSGIRSRQDGSWI 565
Query: 476 ---GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
GGK G + E+ VF+ LG ++ P +R
Sbjct: 566 DLEGGKLG---KAPDMLTAERRVFEGLGLDYIPPEDR 599
>gi|311275846|ref|XP_003134936.1| PREDICTED: DNA-directed DNA/RNA polymerase mu [Sus scrofa]
Length = 491
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 118/489 (24%), Positives = 203/489 (41%), Gaps = 76/489 (15%)
Query: 79 ARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRV---LSQIQGNGNTSSDG 135
ARF G I +L + R+G L R+ L +G + D ++ + G ++ +
Sbjct: 21 ARFPGVAI---YLAEP-RMGRSRRAFLTRLALS-KGFRVLDAYSPEVTHVVMEGTSAEEA 75
Query: 136 ESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSH 195
S + S H + DV S A P+ E + L A + S
Sbjct: 76 ISWQEHRTPSLPPGCSH---PALLDVSWFTESMAAGQPVPVER-RHRLEVAVPREELPSP 131
Query: 196 HITDPSLLYNPPDL---NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIES 252
P P L N +++E L G R S+ +A V++ LP + +
Sbjct: 132 VWMLPYACQRPTPLTHHNASLSEALETLAEAADFDGSKGRHVSFCRAASVLKALPSPVTA 191
Query: 253 ADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY 312
Q++GLP G+ + IQE++ G ++E E+ +T+ LF +++G+G TA + Y
Sbjct: 192 LSQLQGLPHFGEHSRRVIQELLEHGVCEEVERVRLSERYQTMKLFTQIFGVGVRTADQWY 251
Query: 313 EKGHRTLDDLKNEDS-LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII 371
++G RTLDDL+ + LT Q+ GL+++ D+ I R EVE ++++++ A +VLP +
Sbjct: 252 QEGLRTLDDLREQPQRLTKQQKAGLQHYQDLSALILRSEVEALQQVVEAAVGQVLPGATV 311
Query: 372 LCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFL------------RED 419
G +RRGK D+D +I HP G L + L++ +
Sbjct: 312 TLAGGFRRGKLQGHDVDFLITHPQEGLEAGLLPSVICCLEKQGLVLYHQHQRGQQGDPTH 371
Query: 420 LIFSTHSEEVY-------------------PRDI------------------YAFGLIAW 442
L H+ + + PR+ + F L+ W
Sbjct: 372 LAQKPHAMDAFEMSLCIFRLPRPPEAAVGGPREPCPPWKAVRVDLVVTPISQFPFALLGW 431
Query: 443 TGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGF 501
TG+ R LR + + +G L+ GLF + + +E+++F LG
Sbjct: 432 TGSKHFERELRRFSRKERGLWLNSHGLFDS----------EQKMPFHVASEEDIFGLLGL 481
Query: 502 PWLEPHERN 510
+L P +RN
Sbjct: 482 EYLPPEQRN 490
>gi|405122355|gb|AFR97122.1| DNA polymerase lambda [Cryptococcus neoformans var. grubii H99]
Length = 598
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 94/346 (27%), Positives = 161/346 (46%), Gaps = 48/346 (13%)
Query: 210 NKNITEIFGKLINIYRA-LGEDRRSFSYYK-AIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N+ + E F +L ++Y +G++ S Y+ A + + F I S Q + + GIG+++
Sbjct: 253 NEWLAEKFDQLHDLYNGQVGKNPHSIRQYRNAAAAMRRTTFPITSGAQARKINGIGEALA 312
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED- 326
+ I E ++ + +E +E R ++LF +++G+G A +LY+ G RT+ DL+
Sbjct: 313 ERINEFISG--VPGRAFYEDNEHARCVALFKDIYGVGRQYANELYQMGARTITDLRTGRF 370
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L+ Q++GL ++D+++ IPR E +Q+ L++ + V ++ + GSYRRG + GD
Sbjct: 371 PLSPGQQIGLALYEDLRSLIPREECKQIFELIKLEAKTVDEKLWVEIMGSYRRGSETSGD 430
Query: 387 LDVVIMHPDR--KSHKGFLSKYVKKLKEMKFLREDL-----------------------I 421
+D++I D K+HKG + K V KLK + +L I
Sbjct: 431 VDILITRDDTDGKTHKGAIKKLVDKLKAKGVITHELSAPHDWNALEAKWMGVGRVGQSAI 490
Query: 422 FSTHSEEVYPRDIYAFGLIAWTG------------------NDVLNRRLRLLAESKGYRL 463
+ P + + LI +TG + NR LRL A GY L
Sbjct: 491 YRRIDILCVPYESWGASLIYFTGKTDPPLVTRDGRINHSLSSSQFNRSLRLYARKLGYNL 550
Query: 464 DDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ GL+ + V + TE+E+F LG W PH R
Sbjct: 551 NQRGLYRNVVRAIDGTKVLEGDRVASRTEEEIFQELGLRWRHPHHR 596
>gi|402863618|ref|XP_003896104.1| PREDICTED: DNA-directed DNA/RNA polymerase mu isoform 1 [Papio
anubis]
Length = 494
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 89/351 (25%), Positives = 157/351 (44%), Gaps = 60/351 (17%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N +++E L G + R ++ +A V++ LP + + Q++GLP +G+
Sbjct: 153 NTSLSEALETLAEAAGFEGSEGRLLTFCRAASVLKALPSPVTTLSQLQGLPHLGEHSSRV 212
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 328
+QE++ G ++E E+ +T+ LF +++G+G TA + Y +G RTLDDL+ + L
Sbjct: 213 VQELLELGVCKEVERVRCSERYQTMKLFTQIFGVGVRTADRWYREGLRTLDDLREQPQKL 272
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
T Q+ GL++ D+ T + R +V+ +++ +++A + LP + G +RRGK D+D
Sbjct: 273 TQQQKAGLQHHRDLSTPVLRSDVDALQQAVEEAVGQALPGATVTLTGGFRRGKLQGHDVD 332
Query: 389 VVIMHPDRKSHKGFLSKYVKKLKEM--------------------------KFLREDLIF 422
+I HP G L + ++ L++ F R IF
Sbjct: 333 FLITHPKEGQEAGLLPRVMRHLQDQGLILYHQHQHSRWESPTRLAQQSHMDTFERSFCIF 392
Query: 423 ------------STHSEE----------VYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESK 459
ST V P + F L+ WTG+ + LR + + K
Sbjct: 393 RLPQPPGAAVGGSTRPCASWKAVRVDLVVAPISQFPFALLGWTGSKLFQWELRRFSRKEK 452
Query: 460 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
G L+ GLF +T +E+++F LG +L P +RN
Sbjct: 453 GLWLNSHGLF----------DPEQKTFFHVTSEEDIFRHLGLEYLPPEQRN 493
>gi|358400398|gb|EHK49729.1| hypothetical protein TRIATDRAFT_174080, partial [Trichoderma
atroviride IMI 206040]
Length = 607
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 119/510 (23%), Positives = 206/510 (40%), Gaps = 107/510 (20%)
Query: 85 VIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSHRKKIK 144
V++ WL DSL + D Y + L ++ SQ + + + S R+++K
Sbjct: 117 VLKLAWLLDSLEQDAALPVDDYLLYL-------GRKLPSQPKKDTTPKT---SPSRQRLK 166
Query: 145 SSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASAS--------------- 189
V AE + +S +P+SP ++ T++ ST S
Sbjct: 167 GRASAVLARAAEDQ-----QGISTSPHSPQAARRRTHSPSTPSGRKRAEPPTLYRETTSE 221
Query: 190 --------PDF--SSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKA 239
PDF +++ PS + NPP N E + + G+ +Y +
Sbjct: 222 HDIPLPPIPDFLHTTYSCQRPSPV-NPP--NAAFIEELKDVRKLRLLQGDKVGVRAYSTS 278
Query: 240 IPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGE 299
I + PF I+ +++ LPG G ++ +E + G ++ + + ++ + F E
Sbjct: 279 IASLAAYPFLIQRPQEIERLPGCGGKIEKLYREWMADGCTAETKAAAVNTELTVLRKFYE 338
Query: 300 VWGIGPATAQKLYEKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERL 357
+WG+ ATA++ ++KG R LDD+ SL +Q++G+KY+DD + RIPR E E +
Sbjct: 339 IWGVADATAREFFKKGWRDLDDIVEHGWSSLQRAQQIGVKYYDDFQLRIPRAETEAIANA 398
Query: 358 LQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLR 417
+ + P ++ GSYRRGKA GD+DV+I HPD + + + L++ F++
Sbjct: 399 ILTHARRINPGFQMVIVGSYRRGKAESGDVDVIISHPDEAQTLNVVKRLICSLEKSSFIK 458
Query: 418 EDLIFSTHSEE------------------------------------------------- 428
L T +
Sbjct: 459 HTLSVWTRNSNREQAPLPWRGQDRSAGSGFDTLDKAMVVWQEPRDGREHGGAPAPHRRVD 518
Query: 429 --VYPRDIYAFGLIAWTGNDVLNRRLRLLAESK-GYRLDDTGLFPATYGS-----GGKQG 480
+ P ++ W+G R LR ++K G + D +G+ GS +QG
Sbjct: 519 IIISPWKTAGCAILGWSGETTFQRDLRRYCKAKMGLKFDSSGIRRRADGSWVDLESSEQG 578
Query: 481 VRARTSLKFDT-EKEVFDFLGFPWLEPHER 509
+ +T E+ VF+ LG W P ER
Sbjct: 579 ----PAPDMETAERRVFEGLGLEWRPPAER 604
>gi|58477450|gb|AAH90111.1| poll.2 protein [Xenopus (Silurana) tropicalis]
Length = 448
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 88/302 (29%), Positives = 138/302 (45%), Gaps = 43/302 (14%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
NK IT+ L G + R + +A V++ LPF+++S ++VK LP G Q
Sbjct: 188 NKEITDALEILALSASFQGSEARFLGFTRASSVLKSLPFRLQSVEEVKDLPWCGGHSQTV 247
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-EDSL 328
IQEI+ G ++E + E +++ ++G+G TA K Y G R+L DL N L
Sbjct: 248 IQEILEDGVCREVETVKNSEHFQSMKALTSIFGVGIRTADKWYRDGVRSLSDLNNLGGKL 307
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
T Q+ GL ++ D++ + R E +E+L++ A + +P+V + G +RRGK D+D
Sbjct: 308 TAEQKAGLLHYTDLQQSVTREEAGTVEQLIKGALQSFVPDVRVTMTGGFRRGKQEGHDVD 367
Query: 389 VVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVL 448
+I HPD ++ G L K V L F RE FS H
Sbjct: 368 FLITHPDEEALNGLLRKAVAWLDGKHFERELRRFSLH----------------------- 404
Query: 449 NRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHE 508
K L+ GLF ++ + +E+E+F LG P++ P E
Sbjct: 405 ---------VKKMSLNSHGLF----------DIQKKCHHPATSEEEIFAHLGLPYVPPSE 445
Query: 509 RN 510
RN
Sbjct: 446 RN 447
>gi|403417391|emb|CCM04091.1| predicted protein [Fibroporia radiculosa]
Length = 771
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 120/202 (59%), Gaps = 10/202 (4%)
Query: 209 LNKNITEIFGKLINIYRALGEDR---RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKS 265
+N+++ + +L+ I++A + R FSY KAI + P +I S ++ + + G+G
Sbjct: 525 INQDVIDKLEELMEIHKAKPSEEDHWRVFSYGKAIRALRSHPTRIRSFEEARTVRGVGDK 584
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE 325
I EI+ TG L ++ +E+ + V IS+ ++G+G A K Y G RTLDD++
Sbjct: 585 TARKIMEILETGDLRRIA-YERTDDVGAISILQGIYGVGRNIAHKWYANGCRTLDDVQAR 643
Query: 326 D---SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQK-AGEEVLPEVIILCGGSYRRGK 381
+LT +Q GLKY+DDI +R+PR+E ++ +++ A ++ P++ I GSYRRGK
Sbjct: 644 IGGITLTSAQETGLKYYDDINSRMPRNEAAEIFTMIKAVAALDIDPKLFIEIMGSYRRGK 703
Query: 382 ASCGDLDVVIMHP--DRKSHKG 401
A CGD+D++I P D K+H G
Sbjct: 704 ADCGDIDILITRPTDDGKTHHG 725
>gi|290999104|ref|XP_002682120.1| predicted protein [Naegleria gruberi]
gi|284095746|gb|EFC49376.1| predicted protein [Naegleria gruberi]
Length = 309
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 84/310 (27%), Positives = 133/310 (42%), Gaps = 78/310 (25%)
Query: 279 LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKY 338
+ ++E + + I F ++WG+G TA +LY G+R ++++ ++ L Q +GLKY
Sbjct: 1 MKRVEGISSSYQNQIIQEFTKIWGVGQKTAFQLYSYGYRNINEI-DKSKLNSQQLIGLKY 59
Query: 339 FDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKS 398
F + + RIPR EVEQ+ L+ + E+ P ++ GSYRRGK GD+D++I ++
Sbjct: 60 FYEFQQRIPRMEVEQIYNLINQVCYEINPFIVCQVCGSYRRGKQDSGDVDILITLKQDEN 119
Query: 399 HKGF---------------------------------------------------LSKYV 407
F L K V
Sbjct: 120 DNQFSSIELSSNESSSIESNELITINNINNNNNNNNNHINNNHNNNNEKIIIDGLLQKIV 179
Query: 408 KKLKEMKFLREDLIFSTHSE--------------------------EVYPRDIYAFGLIA 441
KL+EMK + + L S +VY R+ +AF L+
Sbjct: 180 TKLEEMKIITDTLSISCKIHLNQDENDTFMGVYYLPQIGIHRRIDIKVYRREHFAFALLY 239
Query: 442 WTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGF 501
+TG+D NR LRLL KGY L D L T + T + TE ++F+F+G
Sbjct: 240 FTGSDHFNRSLRLLCRKKGYSLSDKSLCINTIRDSKSNRIHDGTKINCKTENDIFNFIGI 299
Query: 502 PWLEPHERNL 511
P+ EP +R++
Sbjct: 300 PFKEPKDRDV 309
>gi|357289932|gb|AET73245.1| DNA ligase [Phaeocystis globosa virus 12T]
gi|357292352|gb|AET73688.1| DNA ligase [Phaeocystis globosa virus 14T]
Length = 1093
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 93/318 (29%), Positives = 163/318 (51%), Gaps = 50/318 (15%)
Query: 236 YYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFE--------K 287
Y +A+ I+ L ++ SAD +KGL GIGK++ D + E + TG++ LE + +
Sbjct: 68 YREAVEQIKNLNGEVNSADDIKGLSGIGKAITDKLTEFINTGQVKNLEKLKSEYNTEDYE 127
Query: 288 DEKVRTI--SLFGEVWGIGPATAQKLYEKGHRTLDDL---KNEDS----------LTHSQ 332
+EK++ +F ++ GIG A A+KL + G T+++L KNE+ L +Q
Sbjct: 128 NEKIKQAKKDIFLQIHGIGDAAAEKLIDLGITTIEELKARKNEEIPGKGTKKLKLLNATQ 187
Query: 333 RLGLKYFDDIKTRIPRHEVEQ----MERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
+ GL+Y+++I +IPR E+E+ +E+L +A + + GSYRRGK GD+D
Sbjct: 188 QKGLEYYEEILEKIPRAEIEEYKTTIEKLFNEATDNNTEDNKFEIVGSYRRGKQESGDID 247
Query: 389 VVIMHPDRKSHKGFLSKYVKKLKEMKFL--------REDLIFSTHSEEVYPRDI------ 434
++I + + K K++ LKE + ++ ++ S + E R +
Sbjct: 248 IIITS--KVNDKTSFDKFLDLLKEKDIIKVFLSRGEKKSMVISKLNSESTARRLDFLYTP 305
Query: 435 ---YAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDT 491
YAF ++ +TG+ N +R+LA L++ G G + TS +F+T
Sbjct: 306 PEEYAFAILYFTGSKDFNTGMRMLALKNNLTLNEHGFHTMKDKIKGDK----ITSPEFNT 361
Query: 492 EKEVFDFLGFPWLEPHER 509
E+++F +L + EPHER
Sbjct: 362 EEDIFKYLNMEFKEPHER 379
>gi|149704611|ref|XP_001495709.1| PREDICTED: DNA-directed DNA/RNA polymerase mu [Equus caballus]
Length = 489
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/350 (24%), Positives = 158/350 (45%), Gaps = 59/350 (16%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N +++E L G + R S+ +A V++ LP + + Q++GLP G+
Sbjct: 149 NTSLSEALETLAEAAGFEGSEGRFLSFCRAASVLKALPSPVTALSQLQGLPHFGEHSCRV 208
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-L 328
+QE++ G ++E E+ +T+ LF +++G+G TA + Y +G RTLDDL+ + L
Sbjct: 209 VQELLEHGVCEEVERVRLSERYQTMKLFTQIFGVGVRTADRWYREGLRTLDDLRGQPQRL 268
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
T Q+ GL+++ D+ + R ++E ++++++ A + LP + G +RRGK D+D
Sbjct: 269 TQQQKAGLQHYQDLSALVQRPDLEALQQVVEAAVGQALPGATVTLTGGFRRGKLQGHDVD 328
Query: 389 VVIMHPDRKSHKGFLSKYVKKLKEMKFL-------RED---LIFSTHSEEVYPRDI---- 434
+I HP+ G L + + LK+ + ED L +H+ + + R
Sbjct: 329 FLITHPEEGREAGLLPRVMCCLKKQGLVLYHQHHRSEDPTHLTQQSHTMDAFERSFCIFR 388
Query: 435 ---------------------------------YAFGLIAWTGNDVLNRRLRLLA-ESKG 460
+ F L+ WTG+ R LR + + +G
Sbjct: 389 LPQPPGSAVGGHQRPCPAWKAVRVDLVAVPISQFPFALLGWTGSRHFERELRRFSWKERG 448
Query: 461 YRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
L+ GLF +T +E+++F LG +L P +RN
Sbjct: 449 LLLNSHGLF----------DPEQKTFFHAASEEDIFRHLGLEYLPPEQRN 488
>gi|119570152|gb|EAW49767.1| polymerase (DNA directed), lambda, isoform CRA_j [Homo sapiens]
Length = 172
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 91/141 (64%), Gaps = 2/141 (1%)
Query: 251 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 310
E + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G TAQ
Sbjct: 33 EETQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQM 90
Query: 311 LYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 370
Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA + ++
Sbjct: 91 WYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLL 150
Query: 371 ILCGGSYRRGKASCGDLDVVI 391
+ GSYRRGKA+CGD+DV+I
Sbjct: 151 CVACGSYRRGKATCGDVDVLI 171
>gi|74136509|ref|NP_001028151.1| DNA nucleotidylexotransferase [Monodelphis domestica]
gi|3024713|sp|O02789.1|TDT_MONDO RecName: Full=DNA nucleotidylexotransferase; AltName: Full=Terminal
addition enzyme; AltName: Full=Terminal
deoxynucleotidyltransferase; Short=TDT; Short=Terminal
transferase
gi|2149634|gb|AAC17587.1| terminal deoxynucleotidyltransferase [Monodelphis domestica]
Length = 518
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 98/361 (27%), Positives = 160/361 (44%), Gaps = 70/361 (19%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N+ T+ F L Y D ++ +AI V++ LPF++ S +GLP IG ++
Sbjct: 167 NQRFTDAFEILAKNYEFKENDDTCLTFMRAISVLKCLPFEVVSLKDTEGLPWIGDEVKGI 226
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-- 327
++EI+ G+ +++ DE+ ++ LF V+G+G TA K Y G RTL+ ++++ +
Sbjct: 227 MEEIIEDGESLEVQAVLNDERYQSFKLFTSVFGVGLKTADKWYRMGFRTLNKIRSDKTLK 286
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 387
LT Q+ GL Y++D+ + + E + + L+Q A LP+ ++ G +RRGK D+
Sbjct: 287 LTKMQKAGLCYYEDLIDCVSKAEADAVSLLVQDAVWTFLPDALVTITGGFRRGKEFGHDV 346
Query: 388 DVVIMHP--DRKSHKGFLSKYVKKLKEMK-FLREDLIFST-------------------- 424
D +I P +++ L K K+ L DLI ST
Sbjct: 347 DFLITSPGAEKEQEDQLLQKVTNLWKKQGLLLYCDLIESTFEDLKLPSRKIDALDHFQKC 406
Query: 425 --------HSEE--------------------------VYPRDIYAFGLIAWTGNDVLNR 450
H E+ V P D YAF L+ W+G+ R
Sbjct: 407 FLILKLYHHKEDKRKWEMPTGSNESEAKSWKAIRVDLVVCPYDRYAFALLGWSGSRQFER 466
Query: 451 RLRLLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
LR A K LD+ L+ T + LK +E+E+F LG +++P ER
Sbjct: 467 DLRRYATHEKKMMLDNHALYDKT----------KKIFLKAKSEEEIFAHLGLEYIQPSER 516
Query: 510 N 510
N
Sbjct: 517 N 517
>gi|410951920|ref|XP_003982640.1| PREDICTED: DNA-directed DNA/RNA polymerase mu [Felis catus]
Length = 458
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 146/314 (46%), Gaps = 19/314 (6%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N ++TE L G + R S+Y+A +++ LP ++ + Q++GLP G+
Sbjct: 150 NSSLTEPLEMLAEAAGFEGSEGRFLSFYRAASMLKALPSRVTAMSQLQGLPHFGEHSCRV 209
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-L 328
IQE++ G ++E E+ +T+ LF ++G+G TA + Y +G RTLD L+ + L
Sbjct: 210 IQEVLAQGVCEEVERIRCSERYQTMKLFTGIFGVGVKTADRWYREGLRTLDSLQEQPQRL 269
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
T Q+ GL+++ D+ + R +VE ++R+++ A +LP + G +RRGK D+D
Sbjct: 270 TQQQKAGLRHYQDLSVPLQRPQVEALQRVVEAAVGHILPGATVTLAGGFRRGKLQGHDVD 329
Query: 389 VVIMHPDRKSHKGFLSKYVKKLKEMKFL------------REDLIFSTHSEEVYPRDIYA 436
++ HP G LS+ + L+ + H+ + + R
Sbjct: 330 FLLTHPQEGREAGLLSRVMHSLQSQGLVLYHQHHHGHCADAACPPLQNHAMDGFERTFCI 389
Query: 437 FGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVF 496
F L + G V R A + FP Y G G + + +E+++F
Sbjct: 390 FCLPSPPGAAVGGAR---RAVRVDLVVVPVSQFP--YALLGWTGSK-KKHFHAASEEDIF 443
Query: 497 DFLGFPWLEPHERN 510
LG +L P +RN
Sbjct: 444 RHLGLEYLPPEQRN 457
>gi|116180792|ref|XP_001220245.1| hypothetical protein CHGG_01024 [Chaetomium globosum CBS 148.51]
gi|88185321|gb|EAQ92789.1| hypothetical protein CHGG_01024 [Chaetomium globosum CBS 148.51]
Length = 873
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 114/215 (53%), Gaps = 10/215 (4%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N EI + + Y + R +Y KAI +++ P KI +A + LP IG +
Sbjct: 511 NAKTIEILQSMCDYYTRTNDTWRIMAYRKAIATLQRQPTKITTAAEAALLPNIGPRLAAK 570
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-- 327
IQEI TT +L +L++ + ++LF V+G G A A + +GHR+L DL +S
Sbjct: 571 IQEIATTNRLRRLDYTHDSPLDQALALFLGVYGAGSARAHRWIAQGHRSLADLLAPNSSA 630
Query: 328 -LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
LT QRLG++ + D+ RIPR EV ++ +Q+ + P V +L GGSYRRG S GD
Sbjct: 631 DLTPHQRLGVERYADLNARIPRAEVGKLFAYVQREAAAIDPGVEVLVGGSYRRGADSSGD 690
Query: 387 LDVVIMHPDRKSHKG-----FLSKYVKKLKEMKFL 416
+DV++ R + + FL + V+ L FL
Sbjct: 691 VDVIVTR--RGTVRALELVPFLEELVQVLTRKGFL 723
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 42/81 (51%)
Query: 429 VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLK 488
+ P Y LI +TGND+ NR LRLLA KG RL+ GL+ + + L+
Sbjct: 791 LVPEAEYGAALIYFTGNDIFNRSLRLLASKKGMRLNQRGLYKEVLRGKNRAKITEGQLLE 850
Query: 489 FDTEKEVFDFLGFPWLEPHER 509
EK +F+ LG W EP ER
Sbjct: 851 GRDEKRIFELLGVKWREPWER 871
>gi|320166711|gb|EFW43610.1| hypothetical protein CAOG_01654 [Capsaspora owczarzaki ATCC 30864]
Length = 852
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 143/639 (22%), Positives = 260/639 (40%), Gaps = 139/639 (21%)
Query: 3 PKTTRKPTPALD--SNGIFAGMRVFLVEKG-VQNRRLQIWRQKLVQMGATVEEK-LSKKV 58
P KP+ A+ ++ IF G+R F++ G + +R + K+V G T L +
Sbjct: 221 PTVDVKPSVAVPVVAHQIFTGVRAFVLASGTISQQRKALLESKIVHAGGTTSVCILPQST 280
Query: 59 THV-----LAMD--LEALLQ---------QVSKQHLARFKGSVIRYQWLEDSLRLGEKVS 102
TH+ L+ D + A+ Q +V H A V+ W+ +SL G ++
Sbjct: 281 THIIVGSDLSYDRLVNAIAQFSPSTKVKLEVPASHAAPL---VLSADWVTNSLVRGRRLP 337
Query: 103 EDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSH-----------RKKIKSSTEDVE 151
++ + I+ P LS++ + S ES+ + ++ +E
Sbjct: 338 DEDFVIRTGP-----TTSALSRVPNPSSQESSTESASPHSPLPTAAACKAASPAAPSSLE 392
Query: 152 HFQAESKGDVE--------TNAL--------------SEAPNSPMSSE-SLTNTLSTASA 188
+++S+ ++ T+A SE P + E S T+ +++
Sbjct: 393 WLESDSENGIDLVSDEFDSTSAAHPPAAFTTFRPSRKSEVPPAMRHREVSSTDDADSSAE 452
Query: 189 SPDFSSHHITDPSLLYNPP----DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIE 244
+ S+ ++P + P N +IT+ + + Y G++ R+ + +++ VI
Sbjct: 453 DTNASASPFSNPKYVCFLPVPRQHSNMHITDQLACIEDFYFLSGDESRALAMRRSLCVIA 512
Query: 245 KLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIG 304
LP ++ ++ L +G+S + ++EI+ G+ + D K T+ F ++G G
Sbjct: 513 ALPRRLTRIQDIQSLHNMGQSSRAIVKEILDKGRSTAATCMANDPKYTTMLQFRSIYGCG 572
Query: 305 PATAQKLYEKGHRTLDDLKNEDSLT-----HSQRL--GLKYFDDIKTRIPRHEVEQMERL 357
AQ LYE+G+RT+ ++ + S ++RL GL ++ +++PR EV+Q+
Sbjct: 573 QRIAQALYERGYRTIAEICADRSWVADFPLSAERLEWGLTLHTELGSQVPRDEVKQLGDC 632
Query: 358 LQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKS------------------- 398
+ K +LP V++ GG YRRGK + D D + H D +
Sbjct: 633 VYKYANTILPGVMMTIGGGYRRGKPASKDCDFIFTHNDSDAIEFLLPQLLLQLQVAGLVV 692
Query: 399 -----------------HKGFLSKYVKKLKEMKFLREDLIFSTHSEEVY--------PRD 433
H +S + + R IF + ++ PR
Sbjct: 693 HANTQVGHNTPERIINYHYPIISDFTHRPLLDCTDRSFTIFKSPVSGLHRRIDIICVPRT 752
Query: 434 IYAFGLIAWTGNDVLNRRLRLLAESK-GYRLDDTGLFPATYGSGGKQ------------- 479
YA+ ++AWTG+ NR LRL AE + G+ L GL SG +
Sbjct: 753 QYAYTVLAWTGSKQFNRSLRLYAERELGWTLSSHGLLQIYSESGDSEQQQQQHQHHQQKS 812
Query: 480 --------GVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
G + TE++VF L P+LEP +RN
Sbjct: 813 EQLGRTHNGKQVSFVPPVLTERQVFAQLKVPYLEPWQRN 851
>gi|363539795|ref|YP_004894637.1| mg586 gene product [Megavirus chiliensis]
gi|350610960|gb|AEQ32404.1| putative DNA polymerase family X protein [Megavirus chiliensis]
gi|371943935|gb|AEX61763.1| putative DNA polymerase family X [Megavirus courdo7]
gi|425701498|gb|AFX92660.1| putative DNA polymerase family X protein [Megavirus courdo11]
Length = 357
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 89/305 (29%), Positives = 155/305 (50%), Gaps = 44/305 (14%)
Query: 242 VIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF---EKDEKVRTISLFG 298
+I+ + F+I + G+ GIG + I EI+ TGKLS+L++ +K EK+ +I
Sbjct: 48 IIKNIDFEITDPSDLNGIQGIGDGTKRRIAEILETGKLSELKNKYDKKKQEKINSIQELE 107
Query: 299 EVWGIGPATAQKLYEK-GHRTLDDLKN-----EDSLTHSQRLGLKYFDDIKTRIPRHEVE 352
V GIG +TA+KL K G ++ +LK E ++++ LGLKY+ ++ IPR E++
Sbjct: 108 RVIGIGSSTAKKLITKYGITSVKELKKAIKSGEVEVSNAILLGLKYYGIVEGNIPRKEID 167
Query: 353 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSK------- 405
Q+E+ L+K E++ ++ I+ GSYRRGKA+ GD+DV+I HP K+ K L+
Sbjct: 168 QVEKYLEKQAEKINEDLEIMICGSYRRGKATSGDIDVLIYHPGMKTTKEMLNPEKYDLEP 227
Query: 406 ----YVKKLKEMKFLREDLIFSTHSEEV-----------------YPRDIYAFGLIAWTG 444
++ L + FL + + ++ + + P ++ +TG
Sbjct: 228 YFEIFISNLTKNGFLLDHMTDGSNKKYMGFCKYKSNPVRRIDVRFIPYQSLPSAMLYFTG 287
Query: 445 NDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWL 504
LN +R A+ + L++ GL+ +T +K +E ++F+ LG +L
Sbjct: 288 PYELNTIMRSSAKKRKMILNEYGLYKV-------DANEIKTPVKIKSEADIFNALGMDYL 340
Query: 505 EPHER 509
P ER
Sbjct: 341 TPQER 345
>gi|448825563|ref|YP_007418494.1| putative DNA polymerase family X protein [Megavirus lba]
gi|444236748|gb|AGD92518.1| putative DNA polymerase family X protein [Megavirus lba]
Length = 357
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 89/305 (29%), Positives = 155/305 (50%), Gaps = 44/305 (14%)
Query: 242 VIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF---EKDEKVRTISLFG 298
+I+ + F+I + G+ GIG + I EI+ TGKLS+L++ +K EK+ +I
Sbjct: 48 IIKNIDFEITDPSDLNGIQGIGDGTKRRIAEILETGKLSELKNKYDKKKQEKINSIQELE 107
Query: 299 EVWGIGPATAQKLYEK-GHRTLDDLKN-----EDSLTHSQRLGLKYFDDIKTRIPRHEVE 352
V GIG +TA+KL K G ++ +LK E ++++ LGLKY+ ++ IPR E++
Sbjct: 108 RVIGIGSSTAKKLITKYGITSVKELKKAIKSGEVEVSNAILLGLKYYGIVEGNIPRKEID 167
Query: 353 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSK------- 405
Q+E+ L+K E++ ++ I+ GSYRRGKA+ GD+DV+I HP K+ K L+
Sbjct: 168 QVEKYLEKQAEKINEDLEIMICGSYRRGKATSGDIDVLIYHPGMKTTKEMLNPEKYNLEP 227
Query: 406 ----YVKKLKEMKFLREDLIFSTHSEEV-----------------YPRDIYAFGLIAWTG 444
++ L + FL + + ++ + + P ++ +TG
Sbjct: 228 YFEIFISNLTKNGFLLDHMTDGSNKKYMGFCKYKSNPVRRIDVRFIPYQSLPSAMLYFTG 287
Query: 445 NDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWL 504
LN +R A+ + L++ GL+ +T +K +E ++F+ LG +L
Sbjct: 288 PYELNTIMRSSAKKRKMILNEYGLYKV-------DANEIKTPVKIKSEADIFNALGMDYL 340
Query: 505 EPHER 509
P ER
Sbjct: 341 TPQER 345
>gi|451927347|gb|AGF85225.1| polymerase family X [Moumouvirus goulette]
Length = 357
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 92/305 (30%), Positives = 163/305 (53%), Gaps = 44/305 (14%)
Query: 242 VIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF---EKDEKVRTISLFG 298
++++L F+I + G+ GIG S + I EI+ TGKLS+L++ +K ++ +I
Sbjct: 48 ILKRLDFEITDPSDLDGIRGIGPSTKRRIAEILETGKLSELKNKYDKKKQSQINSIQELE 107
Query: 299 EVWGIGPATAQKLYEK-GHRTLDDLK-----NEDSLTHSQRLGLKYFDDIKTRIPRHEVE 352
EV GIG +TA+KL K G R++D+LK N+ +++++ LGLKY+ +K IPR E+
Sbjct: 108 EVIGIGSSTAKKLITKHGIRSVDELKKAIKLNKITVSNAILLGLKYYGIVKGNIPRKEIV 167
Query: 353 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMH-----------PDRKSHKG 401
Q+E+ L +E+ ++ ++ GSYRRGKA+ GD+DV++ H P++ +
Sbjct: 168 QIEKYLVSQAKEINDDLELIICGSYRRGKATSGDIDVLMYHRAMKTTKEILNPEKYDLEP 227
Query: 402 FLSKYVKKLKEMKFLREDLIFSTHSEEV-------YPR---DIYAF-------GLIAWTG 444
+ YV +L FL + + ++ + + YP DI ++ +TG
Sbjct: 228 YFEMYVGQLTSTGFLLDHMTDASTKKYMGFCKYKSYPVRRIDIRFVPYQSLPSAMLYFTG 287
Query: 445 NDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWL 504
LN +R A+ + L++ GL+ + G++ T +K +E ++F+ LG +L
Sbjct: 288 PYELNTIMRSSAKKRKMILNEYGLYKV-----DENGIKIPTKIK--SESDIFNALGMDYL 340
Query: 505 EPHER 509
P ER
Sbjct: 341 TPEER 345
>gi|321261910|ref|XP_003195674.1| hypothetical protein CGB_H2300W [Cryptococcus gattii WM276]
gi|317462148|gb|ADV23887.1| conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 690
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 128/259 (49%), Gaps = 42/259 (16%)
Query: 285 FEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-EDSLTHSQRLGLKYFDDIK 343
+E +E R I++F +++G+G A +LY G RT+ DL+ L+ Q++GL ++D++
Sbjct: 438 YEDNEHARCIAVFKDIYGVGRQYANELYRMGARTITDLRTGRFPLSPGQQIGLALYEDLR 497
Query: 344 TRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDR--KSHKG 401
+RIPR E Q+ L++ + V ++ + GSYRRG S GD+D++I D K+HKG
Sbjct: 498 SRIPREECRQIFELIKLEAKTVDEKLWVEIMGSYRRGSESSGDVDILITRDDTDGKTHKG 557
Query: 402 FLSKYVKKLKEMKFLREDL---------------IFSTHSEEVY--------PRDIYAFG 438
+ + V KLK + +L + +Y P + +
Sbjct: 558 AIKELVDKLKAKGVITHELSAPHDWNALEAKWMGVGRVGQSAIYRRIDILCVPYESWGAS 617
Query: 439 LIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKF--------D 490
LI +TGN++ NR LRL A GY L+ GL+ + VRAR K
Sbjct: 618 LIYFTGNELFNRSLRLYARKLGYSLNQRGLY--------RNVVRARDGTKVLEGDRVASR 669
Query: 491 TEKEVFDFLGFPWLEPHER 509
TE+E+F LG W PH R
Sbjct: 670 TEEEIFHELGLRWRHPHHR 688
>gi|224052619|ref|XP_002191940.1| PREDICTED: DNA nucleotidylexotransferase [Taeniopygia guttata]
Length = 505
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 99/402 (24%), Positives = 181/402 (45%), Gaps = 80/402 (19%)
Query: 166 LSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYR 225
+ ++P+ P+++ L A+ +S T + + NK T+ F + Y
Sbjct: 126 MEQSPSPPLNTPELEMPALIATKVSQYSCQRKTTLN------NYNKKFTDAFEVMAENYE 179
Query: 226 ALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF 285
+ S + +A +++ LPF + S ++GLP +G ++D I+EI+ G+ S+++
Sbjct: 180 FKENEIFSLEFLRAASLLKSLPFSVTSMKDIQGLPCVGDQVRDIIEEIIEEGESSRVKEV 239
Query: 286 EKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHS--QRLGLKYFDDIK 343
DE+ + F V+G+G T++K Y G RT++++K E +L S Q+ G+ Y++D+
Sbjct: 240 LNDERYKAFKQFTSVFGVGVKTSEKWYRMGLRTVEEVKAEKTLKLSKMQKAGILYYEDLV 299
Query: 344 TRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP-----DRKS 398
+ + + E + + +++ LP+ ++ G +RRGK D+D +I +P D
Sbjct: 300 SCVSKAEADAVSLIVKNTVCTFLPDALVTITGGFRRGKNIGHDIDFLITNPGPREDDELL 359
Query: 399 HKGFL-------SKYVK------------------------------------------K 409
HKG L S +VK +
Sbjct: 360 HKGLLLYCDIIESTFVKEKLPSRKVDAMDHFQKCFAILKLYQPRVDNSTCNTSKKLEMAE 419
Query: 410 LKEMKFLREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRL-RLLAESKGYRLDDTGL 468
+K+ K +R DL+ + P + Y++ L+ WTG+ R L R A + LD+ L
Sbjct: 420 VKDWKAIRVDLVIT-------PFEQYSYALLGWTGSRQFGRDLRRYAAHERKMILDNHAL 472
Query: 469 FPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+ R R LK +E+E+F LG ++EP ERN
Sbjct: 473 YDR----------RKRIFLKAGSEEEIFAHLGLDYVEPWERN 504
>gi|58271038|ref|XP_572675.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|57228934|gb|AAW45368.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 695
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 128/259 (49%), Gaps = 42/259 (16%)
Query: 285 FEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-EDSLTHSQRLGLKYFDDIK 343
+E +E R ++LF +++G+G A +LY G RT+ DL+ L+ Q++GL ++D++
Sbjct: 443 YEDNEHARCVALFKDIYGVGRQYANELYRMGARTITDLRTGRFPLSTGQQIGLALYEDLR 502
Query: 344 TRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDR--KSHKG 401
+RIPR E +Q+ L++ + V ++ + GSYRRG + GD+D++I D KSHKG
Sbjct: 503 SRIPREECKQIYELIKLEAKTVDEKLWVEIMGSYRRGSETSGDVDILITRDDADGKSHKG 562
Query: 402 FLSKYVKKLKEMKFLREDL---------------IFSTHSEEVY--------PRDIYAFG 438
+ K V KLK + +L + +Y P + +
Sbjct: 563 AIKKLVDKLKAKGVITHELSAPHDWNALEAKWMGVGRVGQSAMYRRIDILCVPYESWGAS 622
Query: 439 LIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKF--------D 490
LI +TGN++ NR LRL A GY L+ GL+ + VRAR K
Sbjct: 623 LIYFTGNELFNRSLRLYARRLGYNLNQRGLY--------RNVVRARDGTKVLEGDRVASR 674
Query: 491 TEKEVFDFLGFPWLEPHER 509
TE+ +F LG W PH R
Sbjct: 675 TEEGIFQELGLRWRHPHHR 693
>gi|301117710|ref|XP_002906583.1| DNA polymerase lambda-like protein [Phytophthora infestans T30-4]
gi|262107932|gb|EEY65984.1| DNA polymerase lambda-like protein [Phytophthora infestans T30-4]
Length = 472
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 115/191 (60%), Gaps = 3/191 (1%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
+LN ++T+ +++ + R + Y K + ++ + ++ S K + + ++
Sbjct: 251 NLNAHLTDPLEEMMEFLDVERDVWRQYMYKKVVSSLKAMRRRVCSVKDFKDMHWVKGRLR 310
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
D + EI+ TG+L+KL+ + + ++R + +WG+GPATA KLY +G++++ +L+ ++
Sbjct: 311 DKVIEILETGRLAKLDAKKSNPRLRALVEIARIWGVGPATAAKLYGQGYKSVTELRKPEA 370
Query: 328 ---LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 384
LT Q++G+K+++D T+IPR EV Q+E+ + +++P I L GSYRRGK S
Sbjct: 371 AAVLTAQQQIGVKHYEDFLTKIPRAEVHQIEQTVVDEVHKMIPNAIALACGSYRRGKLSS 430
Query: 385 GDLDVVIMHPD 395
GD DV+I PD
Sbjct: 431 GDCDVLITDPD 441
>gi|358377469|gb|EHK15153.1| hypothetical protein TRIVIDRAFT_51446 [Trichoderma virens Gv29-8]
Length = 598
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 132/553 (23%), Positives = 223/553 (40%), Gaps = 89/553 (16%)
Query: 34 RRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDL----------EALLQQVSKQHLARFK- 82
RRL++ + + GA +E + K A ++ EAL + + H+A
Sbjct: 55 RRLKLATEPVALEGAEGDEAIGDKRGRSDAAEVPSKRPRLSGSEALRSRADEGHVATLDL 114
Query: 83 --GS-----VIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDG 135
GS V++ WL DSL + D Y + +G I+ S N T
Sbjct: 115 LGGSGDVVLVLKLAWLLDSLEQNVVLPADDYLLY---QGRKISSH--SAQASNPGTPQPR 169
Query: 136 ESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASAS------ 189
+ + S+ D + + ++ + S A + + SE T T S
Sbjct: 170 KEDETTRSASAVNDSPYSKRTTRPGTSS---STASDGRLHSEPPTLHRETTSEHEVPLPP 226
Query: 190 -PDF--SSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEK 245
PDF +++ PSL+ +PP+ I E+ K I R L D+ +Y +I +
Sbjct: 227 IPDFLHTTYSCQRPSLV-SPPNAT-FIAEL--KAIRTLRLLRGDQVGVRAYSTSIASLAA 282
Query: 246 LPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGP 305
P ++ +++ LPG G + Q+ G + + D ++ + F ++WG+G
Sbjct: 283 YPHLLQRPQEIERLPGCGPKIAQLYQQWTEDGCTDETRKAKTDTELVVLKTFYDIWGVGD 342
Query: 306 ATAQKLYEKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGE 363
TA++ ++KG R LDD+ DSL+ Q++G+KY+D+ + +IPR E E + ++
Sbjct: 343 TTARQFFKKGWRDLDDIVEYGWDSLSRVQQIGVKYYDEFQLKIPRDETETIASVILAHAR 402
Query: 364 EVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFS 423
V P ++ GSYRRGK S GD+DVV+ HPD + + V L++ F+ L
Sbjct: 403 RVDPGFQMVIVGSYRRGKPSSGDVDVVLSHPDEAQTLDIIERLVSSLEKSNFITHTLSVW 462
Query: 424 THSEE--------------------------------------------VYPRDIYAFGL 439
T + E + P +
Sbjct: 463 TKNSERGQAPLAWKGEGRRAGSGFDTLDKAMVVWQNPQDKGPHRRVDIIISPWKTAGCAI 522
Query: 440 IAWTGNDVLNRRLRLLAESK-GYRLDDTGLFPATYGSGG--KQGVRARTSLKFDTEKEVF 496
+ W+G R LR + K G++ D +G+ GS + R E+ VF
Sbjct: 523 LGWSGETTFQRDLRRYCKVKMGFKFDSSGVRSRADGSWVDLESSERGPAPDMETAERRVF 582
Query: 497 DFLGFPWLEPHER 509
+ L W P ER
Sbjct: 583 EGLDLEWRPPAER 595
>gi|296488366|tpg|DAA30479.1| TPA: DNA-directed DNA polymerase mu [Bos taurus]
Length = 473
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/308 (25%), Positives = 139/308 (45%), Gaps = 48/308 (15%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N +++E L G + R ++Y+A V++ LP + + Q++GLP G+
Sbjct: 149 NASLSEALETLAEAAGFDGSEGRQIAFYRAASVLKALPSPVTALSQLQGLPHFGEHSCRV 208
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-L 328
+QE++ G ++E E+ +T+ LF +++G+G TA + Y KG RTL DL+ E L
Sbjct: 209 VQELLEHGVCDEVERVRLSERYQTMKLFTQIFGVGVRTADQWYRKGLRTLADLREESQRL 268
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
T Q+ GL++ D+ I R +VE +++ ++ A + LP + G +RRGK D+D
Sbjct: 269 TQQQKAGLQHHQDLSAPILRSDVEALQQEVEAAVRQALPGATVTLAGGFRRGKLQGHDVD 328
Query: 389 VVIMHPDRKSHKGFLSKYVKKLKEMKFL---------REDLIFSTHSEEVYPRDI----- 434
+I HP G L + + LK+ + + DL +H+ + + R
Sbjct: 329 FLITHPQEGQEAGLLPRVMCYLKKQGLVLYHQHQHSQQGDLTQQSHTMDAFERSFCIFRL 388
Query: 435 --------------------------------YAFGLIAWTGNDVLNRRLRLLA-ESKGY 461
+ F L+ WTG+ R LR + + +G
Sbjct: 389 PQPPGAAVGGAQKPCYAWKAVRVDLVVAPISQFPFALLGWTGSKHFERELRRFSRKERGL 448
Query: 462 RLDDTGLF 469
L+ GLF
Sbjct: 449 CLNSHGLF 456
>gi|440639014|gb|ELR08933.1| hypothetical protein GMDG_03600 [Geomyces destructans 20631-21]
Length = 678
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 104/390 (26%), Positives = 176/390 (45%), Gaps = 74/390 (18%)
Query: 190 PDF--SSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKL 246
PD+ +S+ + LY LN E + I R L +D +Y +I +
Sbjct: 290 PDYLKTSYSCQRTTPLYT---LNDPFIEFLVR-IRQSRILTDDEVGVRAYSTSIASLAAY 345
Query: 247 PFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPA 306
P I +A+++ LPG + + QE TG + ++ +KD +++T++LF E+WG+GP
Sbjct: 346 PHTISTAEEILHLPGCSERIAALWQEFNDTGHIGAVDDIDKDPEMQTLNLFYEIWGVGPK 405
Query: 307 TAQKLY-EKGHRTLDDLK--NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGE 363
A+ Y KG R LDD+ ++L+ Q++G+KY+++++ +IPR EVE++ ++ +A
Sbjct: 406 GARDFYYRKGWRDLDDVVEFGWNNLSRVQQIGVKYYEELQQKIPRDEVERIGAVILEAAN 465
Query: 364 EVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFS 423
V P + G YRRGK GD+DVV+ +PD + + V++++ +++ L+ S
Sbjct: 466 HVAPGCQMTIVGGYRRGKPESGDVDVVVSNPDEIVTLYLVQRIVEEIERREWITHTLLLS 525
Query: 424 THSEEVYPRDIY---------AFG---------LIAWTGNDVLNRRLRLLAESKG----- 460
T + E + FG L+ W + R L A+ +
Sbjct: 526 TANSERKQTAVSWKGDMGHTGGFGVGFDTLDKALVVWQDPEWPTREEDLAADPRAKNPNV 585
Query: 461 -YRLD-------DTGLFPATYGSGG------KQGVRARTSLKFDT--------------- 491
R+D G A + SG ++ V+A LKFD+
Sbjct: 586 HRRVDIIVSPWRTVGCAVAGWTSGTTFQRDLRRYVKAVLGLKFDSSGVRRRDDGAWVDLE 645
Query: 492 ------------EKEVFDFLGFPWLEPHER 509
EK VF+ LG W EP ER
Sbjct: 646 GVGGKAPDMLTAEKRVFEGLGLEWREPGER 675
>gi|392560796|gb|EIW53978.1| Nucleotidyltransferase [Trametes versicolor FP-101664 SS1]
Length = 626
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 110/395 (27%), Positives = 166/395 (42%), Gaps = 111/395 (28%)
Query: 220 LINIYRAL-GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGK 278
+I RAL GEDR + SY +AI VI+ P KI S QV+ LP IG + + E + TG
Sbjct: 236 IIRQSRALEGEDRSALSYQRAISVIKAYPEKIRSLKQVQKLPYIGVKISGLVDEYLDTGH 295
Query: 279 LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK--------------- 323
+S+ + + E+ RT+SLF ++GIGP A++L+ G R+LDDL+
Sbjct: 296 ISEAQTIKSSERFRTLSLFTSIYGIGPHAARRLFALGLRSLDDLEIYYGVEPSSSTASPS 355
Query: 324 ------------------------------NEDSLTHSQ-RLGLKYFDDIKTRIPRHEVE 352
+E+ L S R+ L +D+ IPR EVE
Sbjct: 356 SQPSQIVEIEEKEKTRQAGWKSRDKDRGKGDEEGLGDSWIRVALGLREDLSKMIPRDEVE 415
Query: 353 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKE 412
++ R++ + + + P + G YRRGK D+D+V HPD KG ++V+ L E
Sbjct: 416 EIGRVVMRELDALEPGCVSTIVGGYRRGKPESNDVDIVFTHPDAGKVKGLCKRFVRHLHE 475
Query: 413 MKFL----------------------REDL-IFSTHSE------EVYPRDIYAFGLIAWT 443
+ + DL F H + + + F L A +
Sbjct: 476 RGMVTHVMRTPPPPPLLYPSQARANTKADLSSFHAHDPLRTAHWDTLEKSLTVFVLPASS 535
Query: 444 GNDV---LNRRLRLL-AESKGYRLDDTGLFPATYGSGG--------KQGVRARTSLKFD- 490
+ + RRL L+ A + Y + A G G +Q + R +KFD
Sbjct: 536 ALNSSVPVRRRLDLIFAPPEVY-------WTAVVGWSGSIMFQRDLRQWAKDRCGMKFDS 588
Query: 491 ---------------TEKEVFDFLGFPWLEPHERN 510
TEKEVF+ LG W++P RN
Sbjct: 589 SGITRRYDSKEFHPKTEKEVFELLGLEWVDPVWRN 623
>gi|354471127|ref|XP_003497795.1| PREDICTED: DNA nucleotidylexotransferase [Cricetulus griseus]
Length = 510
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/357 (26%), Positives = 159/357 (44%), Gaps = 64/357 (17%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
+ N+ T+ F L Y + ++ +A V+ LPF I S +G+P +G ++
Sbjct: 163 NCNQLFTDAFDILAENYEFRENEGSCVAFMRAAAVLRSLPFPIISVKDTEGIPCLGDKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+ I+ G+ S++ DE+ ++ LF V+G+G TA+K + G RTL +K+++S
Sbjct: 223 CIIEGIIEDGESSEVIAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIKSDES 282
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ ++ G +RRGK +
Sbjct: 283 LRFTRMQKAGFLYYEDLVSCVNRAEAEAINVLVKEAVAVFLPDALVTMTGGFRRGKMTGH 342
Query: 386 DLDVVIMHP--DRKSHKGFLSKYVKKLKEMK-FLREDLIFST---------------HSE 427
D+D +I P + + L K ++ L DLI ST H +
Sbjct: 343 DVDFLITSPGATEEEEQQLLHKVTDLWRQQGLLLYCDLIESTFEKFKLPSRKVDALDHFQ 402
Query: 428 EVY---------------------------------PRDIYAFGLIAWTGNDVLNRRLRL 454
+ + P D AF L+ WTG+ R LR
Sbjct: 403 KCFLILKLYHQRVGSDESSQQEGKGWKAIRVDLVMCPYDRRAFALLGWTGSRQFERDLRR 462
Query: 455 LA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
A + LD+ L+ T R L+ D+E+E+F LG ++EP ERN
Sbjct: 463 YATHERKMMLDNHALYDKT----------KRVFLEADSEEEIFAHLGLDYIEPWERN 509
>gi|432092624|gb|ELK25159.1| DNA-directed DNA/RNA polymerase mu [Myotis davidii]
Length = 459
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 147/334 (44%), Gaps = 61/334 (18%)
Query: 228 GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEK 287
G + R S+ +A V++ LP + + Q++GLP G+ IQE++ G ++E ++
Sbjct: 135 GSEGRLLSFSRAASVLKALPCPVTALSQLQGLPHFGEHSCRVIQELLEHGVCEEVERVQR 194
Query: 288 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSLTHSQRLGLKYFDDIKTRI 346
E+ +++ LF ++G+G TA + Y +G RTLDD++ + LT Q+ GL+++ D+ + +
Sbjct: 195 SERYQSMKLFTRIFGVGVRTADQWYREGLRTLDDVRKQVQRLTQQQKAGLEHYQDLSSPV 254
Query: 347 PRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY 406
R + E + ++++ A LP + G +RRGK D+D +I HP+ G L +
Sbjct: 255 QRPDAEALRQVVEAAVGWALPGATVTLAGGFRRGKLQGHDVDFLITHPEEGQEVGLLPRV 314
Query: 407 VKKLKEMKFL------------REDLIFSTHSEEVY------------------------ 430
+ L++ + L+ HS + +
Sbjct: 315 MHYLEQQGLVLYQQHQRSPSGDPARLVLKGHSMDTFEQSFCIFRLPRPPGTAKGGTWSPH 374
Query: 431 -------------PRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSG 476
P + F L+ WTG+ R LR + + +G L+ GLF
Sbjct: 375 PSWKAVRVDLVVAPISQFPFALLGWTGSKHFERELRRFSRKERGLWLNSCGLF------- 427
Query: 477 GKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
T E+++F LG +L P +RN
Sbjct: 428 ---DPEQETFFHAAAEEDIFRRLGLAYLPPEQRN 458
>gi|156048408|ref|XP_001590171.1| hypothetical protein SS1G_08935 [Sclerotinia sclerotiorum 1980]
gi|154693332|gb|EDN93070.1| hypothetical protein SS1G_08935 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 940
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 96/356 (26%), Positives = 170/356 (47%), Gaps = 35/356 (9%)
Query: 85 VIRYQWLEDSLRLGEKVSEDLY------RIKLDPE--GENIADRVLSQIQGNGNTSSDGE 136
V+ W DS+R G+ + D Y RI P+ +I R + I+ N +
Sbjct: 450 VLNKDWYFDSVREGKLLPMDNYLIYEGRRIMEPPKILSSDILTRAAADIKSYPNPKYNHY 509
Query: 137 SSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHH 196
H++ K T Q S+ D + + P E L S +P
Sbjct: 510 YRHQQSSKPLTRPTLLTQTTSEHD-------DPEHYPPLPEYLITHYSCERPTP------ 556
Query: 197 ITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQ 255
+T P+ + +T++ + I + R L D+ +Y AI I P+ + S ++
Sbjct: 557 LTSPN--------DDFLTQL--QSIKLKRTLDGDQIGVRAYSTAIASIAAYPYVLTSPNE 606
Query: 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK- 314
V LPG + + + + TG + ++ F+ + ++ + LF +WG G ATA+ Y+K
Sbjct: 607 VIRLPGCDQKIANLFLQYQNTGTIDEVVEFQNNPRMEVLRLFHNIWGAGDATARDFYDKR 666
Query: 315 GHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIIL 372
G R LDD+ D LT Q++G+KY+D+ IPR EVE++ ++ ++ ++
Sbjct: 667 GWRDLDDVIEYGWDKLTRVQQIGVKYYDEFLLPIPRAEVEEISFIVLTEARKIDEGYQMV 726
Query: 373 CGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE 428
G YRRGK +CGD+D+++ HPD K F+S+ ++L+++ ++ L+ ST + E
Sbjct: 727 IVGGYRRGKENCGDVDLILTHPDEKFTFNFVSRLTERLEDVGWITNILLKSTRNSE 782
>gi|302414018|ref|XP_003004841.1| DNA polymerase lambda [Verticillium albo-atrum VaMs.102]
gi|261355910|gb|EEY18338.1| DNA polymerase lambda [Verticillium albo-atrum VaMs.102]
Length = 770
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/181 (38%), Positives = 104/181 (57%), Gaps = 11/181 (6%)
Query: 271 QEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTH 330
+EIVTT +L +LEH E+D T+ F ++G+G A A + +GHRTLDDL+ L+
Sbjct: 474 EEIVTTDRLRRLEHAERDPADETLQRFVRIYGVGNAQASRWIAQGHRTLDDLRARAVLSA 533
Query: 331 SQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVV 390
+QR+G+ ++DD+ TRIPR EVE + +++ A + P V ++ GGSYRRG AS GD+D++
Sbjct: 534 NQRIGIDHYDDLNTRIPRREVEALAAVVRSAAAALDPSVELIVGGSYRRGAASSGDIDLI 593
Query: 391 IMHPDRKSHK---GFLSKYVKKLKEMKFLREDLIFSTHSEEVYPRDIYAFGLIAWTGNDV 447
+ S + FL++ + L+ FL L S RD A G W G V
Sbjct: 594 VTREGTTSARELLPFLTRLTRTLEARGFLVAALATS--------RDDDAGGGTKWHGCCV 645
Query: 448 L 448
L
Sbjct: 646 L 646
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 40/81 (49%)
Query: 429 VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLK 488
V P L+ +TGND+ NR +RLLA KG RL+ GL+ + V L+
Sbjct: 688 VVPAAELGAALLYFTGNDIFNRSMRLLAARKGMRLNQRGLYRDVLRGPDRAKVTDGALLE 747
Query: 489 FDTEKEVFDFLGFPWLEPHER 509
E+ +F L W EPHER
Sbjct: 748 GRDERRIFALLNVTWREPHER 768
>gi|291223873|ref|XP_002731933.1| PREDICTED: terminal deoxynucleotidyl transferase-like [Saccoglossus
kowalevskii]
Length = 539
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 109/189 (57%), Gaps = 2/189 (1%)
Query: 232 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
R+ ++ +A ++ LP + S V L IGK +D I+EI+ G +++E + E
Sbjct: 181 RALAFRRASASLKSLPHTVTSMRDVANLKDIGKHCKDVIREILEKGYSTEIEDIKSSEWF 240
Query: 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS--LTHSQRLGLKYFDDIKTRIPRH 349
+TI LF ++G GPATA+K Y G+RTL+D+K + LT QR G++++DD++T + R
Sbjct: 241 KTIQLFVGIYGCGPATARKWYNMGYRTLEDIKKSTTIHLTADQRNGIRFYDDLQTPVIRR 300
Query: 350 EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKK 409
E E + + + +E+ + ++ G + RGK S D+D+++ HPD KG L K +
Sbjct: 301 EAEAIRNFIIEEIKEISNDFTVVITGGFIRGKDSGHDVDLLMSHPDNGKEKGVLQKLITN 360
Query: 410 LKEMKFLRE 418
LK+ L E
Sbjct: 361 LKQKNLLLE 369
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 35/149 (23%)
Query: 373 CGGSYR-----RGKASCGDL----DVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFS 423
CGG+ + +G SC D ++ H D S + K + + +R D +
Sbjct: 416 CGGASKTTEKVQGGKSCSSNTKSDDYILKHTD--------SFDLPKDRTWRAVRVDFV-- 465
Query: 424 THSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK-GYRLDDTGLFPATYGSGGKQGVR 482
V P+ Y + L+ W G+ + NR +RL A+ + G L GL Y +Q +
Sbjct: 466 -----VCPQSQYGYALLGWVGSKMFNRSIRLYADRELGMMLSSHGL----YDRINQQYIP 516
Query: 483 ARTSLKFDTEKEVFDFLGFPWLEPHERNL 511
A +E+E+F+ L W+E +RN
Sbjct: 517 A------SSEQEIFEHLKLTWIEHEDRNC 539
>gi|390599031|gb|EIN08428.1| Nucleotidyltransferase [Punctularia strigosozonata HHB-11173 SS5]
Length = 325
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 139/324 (42%), Gaps = 86/324 (26%)
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLD--------- 320
I E + TG +S+ E + DE+ +++S F V+GIGP TA+ LY +G RTL+
Sbjct: 2 IDEFLKTGSISESEKIKADERFQSLSAFSSVYGIGPNTARGLYARGLRTLEHLERYYEVW 61
Query: 321 -----------DLKNEDSL------------------THSQRLGLKYFDDIKTRIPRHEV 351
D K +D + T R L Y +D+ +IPR EV
Sbjct: 62 EDPQVAATSQRDAKTDDDVKDVKPVVIEEADVRGEGGTTLIRAALGYREDLAIKIPRDEV 121
Query: 352 EQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLK 411
E++ RL+ EEV + + G YRRGK D+D+V HPD++ KG K VK+L
Sbjct: 122 EEIGRLMAAELEEVEKGCVSIIVGGYRRGKPESNDVDIVFTHPDKEKEKGLCKKLVKRLI 181
Query: 412 EMKFL---------REDLIFSTHSEE---------VYP---------------------- 431
E + RE TH + V+P
Sbjct: 182 ERGLVTHVIHQSSFREHNALRTHHWDSLEKALTVFVHPPGSSYARAHVDKHGHRLRRRID 241
Query: 432 -----RDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTS 486
+IY ++ WTG+ V R LRL A K + G+F AT + ++
Sbjct: 242 LIFAQPEIYWTAVVGWTGSTVFERDLRLWA--KNEKRVTCGIFDATRSLTRTRRRDSKM- 298
Query: 487 LKFDTEKEVFDFLGFPWLEPHERN 510
+ TEKEVFD +G PW++P RN
Sbjct: 299 MYAQTEKEVFDIMGLPWIDPTLRN 322
>gi|390343812|ref|XP_785226.2| PREDICTED: DNA polymerase lambda-like [Strongylocentrotus
purpuratus]
Length = 464
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 103/399 (25%), Positives = 183/399 (45%), Gaps = 75/399 (18%)
Query: 15 SNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVS 74
S+GIF+G+ VF+++ G+ R I++++LV+ GA V+ + + THV+ +D E +
Sbjct: 29 SSGIFSGLSVFMLQAGLGKARTDIFKKQLVKHGAVVKPAIDDQTTHVI-VDEEMTFPRFC 87
Query: 75 KQHLARFKGS-------VIRYQWLEDSLRLGEKV-------------------------- 101
+ + +++ S +I+ +WL L V
Sbjct: 88 R--IMKYEESQVPDRLMIIKARWLSSCLSEALLVDFEEFILAPVRSEKFKLFTPPKEETK 145
Query: 102 --SEDLYRI--KLDP---EGENIADRVLSQIQGNGNTSSDGESSHRKKIKSSTEDVEHF- 153
SED+ KL+P +G N+ QI G G ++ S R + + S D ++
Sbjct: 146 SKSEDVESSDGKLEPLEVQGSNMPG-TSKQIPGTGASTVTTSPSKRVQARGSDSDDSNYV 204
Query: 154 -----------QAESKGDV-----ETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHI 197
+ ES+G V ++++ + PN+ S N + + ++ +H
Sbjct: 205 PSDDDGGGSGDEEESRGKVFSSDVDSSSNASTPNTSPSKLPRGNWVCSRPSTAYKETH-- 262
Query: 198 TDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVK 257
N++ITE L+ Y + R+ Y KAI ++ + + ++
Sbjct: 263 ------------NQHITEKLEVLMKAYENTQDRWRALGYKKAISALKNYGKDVTTWEEAS 310
Query: 258 GLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHR 317
+PGIG M D I EI+ +G L K++H K E + I LF VWG GP A++ ++G R
Sbjct: 311 AIPGIGTKMADKILEIIESGHLRKIDHVCKGEDMEAIDLFNNVWGAGPTVAREWVQQGFR 370
Query: 318 TLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMER 356
TL+DL+ + L+ Q +GLK++ + R+PR E +ER
Sbjct: 371 TLEDLREKAKLSKQQLIGLKHYHEFLERMPRQEAGDIER 409
>gi|336372511|gb|EGO00850.1| hypothetical protein SERLA73DRAFT_50337 [Serpula lacrymans var.
lacrymans S7.3]
Length = 584
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 126/520 (24%), Positives = 212/520 (40%), Gaps = 113/520 (21%)
Query: 61 VLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADR 120
V A+ ++ L++ LA+ K +++ QWLEDS++ G + P G+ A
Sbjct: 105 VTAVHMKQRLERHVDWELAKSK-AIVTPQWLEDSVKYGRPM----------PCGDYAALN 153
Query: 121 VLSQIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLT 180
VL + + E R S + + S+ + + E P LT
Sbjct: 154 VL-------HDETVHECPDRPSCNSGSPEPGPSHTSSRSPSTSKQIPEDAPQPADISLLT 206
Query: 181 NTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAI 240
+T S + S L P N+ + + K+ GE+R SY +AI
Sbjct: 207 HT----------SRYCCCRASPLVCP---NQGLIKQLDKIKEARNLEGEERSMLSYARAI 253
Query: 241 PVIEKLPFKIESAD---QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLF 297
V P I ++ ++ LP +G+ + ++E + TG++++ + + + +S F
Sbjct: 254 SV-SPFPHVITHSNLKREISKLPYLGEKLLSMVEEFIKTGQINETQGILTSSRFQALSAF 312
Query: 298 GEVWGIGPATAQKLYEKGHRTLDDLK-------------------------NEDSLTHSQ 332
+ GIGP TA+KLY G RTL+DL+ +E + S
Sbjct: 313 TTIHGIGPHTARKLYNLGLRTLEDLERYYEVEPGRCGQETLAVIEAAGRESDEAIVERSI 372
Query: 333 RLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIM 392
++ L D IPR EVE+M R++ E++ + G YRRGK D+D+VI
Sbjct: 373 KVALALRHDFSQTIPRAEVEEMNRVVMSELEQIEQGCKSIVVGGYRRGKPQSNDVDIVIS 432
Query: 393 HPDRKSH----KGFLSKYVKKLKEMKFLREDLIFSTHSEE------------------VY 430
H + +S KG ++V++L E + + S E V
Sbjct: 433 HRNWESGAGKIKGLCKRFVRRLHERGLVTHVMHLSGFHEHNALRTHHWDSLEKALTVFVL 492
Query: 431 PRD------------------IYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPA 471
P D ++ ++ WTG+ + R LRL A + KG++ D +G+
Sbjct: 493 PGDGSQRRVYRRLDLIFAAPQVFWTAVVGWTGSTMFQRDLRLYAKQQKGFKFDSSGI--- 549
Query: 472 TYGSGGKQGVRARTSLKF-DTEKEVFDFLGFPWLEPHERN 510
R + L F TE+EVF+ LG ++ P RN
Sbjct: 550 --------SRRHDSKLFFPKTEREVFELLGLVYVHPTLRN 581
>gi|444708211|gb|ELW49303.1| DNA nucleotidylexotransferase [Tupaia chinensis]
Length = 536
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 99/374 (26%), Positives = 162/374 (43%), Gaps = 71/374 (18%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
+ N+ T+ F L Y + S + +A V+ LPF I S +GLP +G ++
Sbjct: 162 NCNRVFTDAFETLAENYEFRENEDSSVIFLRAASVLRSLPFTITSMRDTEGLPCLGDKVK 221
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S++ DE+ ++ LF V+G+G T++K + G RTL ++++ S
Sbjct: 222 CVIEEIIEDGESSEVNAVLNDERYKSFKLFTSVFGVGLKTSEKWFRMGFRTLSRVRSDKS 281
Query: 328 --LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
LT Q+ G Y++D+ + + R E E + L+++A LP+ ++ G +RRGK +
Sbjct: 282 LHLTRMQQAGFLYYEDLASCVTRAEAEAVGVLVKEAVGAFLPDALVTITGGFRRGKKTGH 341
Query: 386 DLDVVIMHPDRKS---------------HKGFLSKY------VKKLKEMK--------FL 416
D+D +I P KG L Y +KLK F
Sbjct: 342 DVDFLITSPGSTEEKEEELLQKVLNLWEKKGLLLYYDLVESTFEKLKTPSRKVDALDHFP 401
Query: 417 REDLIFSTHSEEV----------------------YPRDIYAFGLIAWTGNDVLNRRLRL 454
+ LI H + V P + +AF L+ WTG+ R LR
Sbjct: 402 KCFLILKLHHQRVDGDKPSQQEGKSWKAIRVDLVMCPYERHAFALLGWTGSRQFERDLRR 461
Query: 455 LA-ESKGYRLDDTGLFPAT-YGSGGKQGVRA----------------RTSLKFDTEKEVF 496
A + LD+ L+ T + G V R LK ++E+++F
Sbjct: 462 YATHERKMMLDNHALYDKTKFCEGYLHCVHTEMLRKVPECLPFLCFQRVFLKAESEEDIF 521
Query: 497 DFLGFPWLEPHERN 510
LG ++EP ERN
Sbjct: 522 AHLGLDYIEPWERN 535
>gi|60223047|ref|NP_001012479.1| DNA nucleotidylexotransferase [Rattus norvegicus]
gi|59809178|gb|AAH89904.1| Deoxynucleotidyltransferase, terminal [Rattus norvegicus]
Length = 510
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 98/355 (27%), Positives = 162/355 (45%), Gaps = 64/355 (18%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N+ T+ F L Y + + +A V++ L F I S ++G+P +G ++
Sbjct: 165 NQLFTDAFDILAENYEFRENEVSCLPFMRAASVLKSLSFPIVSMKDIEGIPCLGDKVKCV 224
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL- 328
I+ I+ G+ S+++ DE+ ++ LF V+G+G TA+K + G RTL +K++ SL
Sbjct: 225 IEGIIEDGESSEVKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIKSDKSLR 284
Query: 329 -THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 387
TH Q+ G Y++D+ + + R E E + L+++A LP+ ++ G +RRGK + D+
Sbjct: 285 FTHMQKAGFLYYEDLVSCVNRAEAEAVSMLVKEAVVAFLPDALVTMTGGFRRGKMTGHDV 344
Query: 388 DVVIMHPDRKS---------------HKGFL-------SKYVK-KLKEMK------FLRE 418
D +I P+ +G L S + K KL K F +
Sbjct: 345 DFLITSPEATEEEEQQLLHKVTNFWRQQGLLLYCDIIESTFEKFKLPSRKVDALDHFQKC 404
Query: 419 DLIFSTH-----SEE-----------------VYPRDIYAFGLIAWTGNDVLNRRLRLLA 456
LI H SEE + P + AF L+ WTG+ R LR A
Sbjct: 405 FLILKLHRGLVRSEESGQQEGKDWKAIRVDLVMCPYERRAFALLGWTGSRQFERDLRRYA 464
Query: 457 -ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+ LD+ L+ T R L+ ++E+E+F LG ++EP ERN
Sbjct: 465 THERKMMLDNHALYDKT----------KRVFLEAESEEEIFAHLGLDYIEPWERN 509
>gi|255079262|ref|XP_002503211.1| predicted protein [Micromonas sp. RCC299]
gi|226518477|gb|ACO64469.1| predicted protein [Micromonas sp. RCC299]
Length = 742
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 102/377 (27%), Positives = 169/377 (44%), Gaps = 76/377 (20%)
Query: 206 PPDLNKNITEIFGKLINIYRAL--GEDRRSFSYYKAIP-VIEKLPFKIESADQVKGLPGI 262
P +LN +IT +L IY + G + ++K + +E+L F + +Q+ P
Sbjct: 371 PVNLNPHITRPLEELAAIYEDVLGGTNAYKARHHKQVAGAVERLDFVVTDVEQLCDPPVT 430
Query: 263 ------GKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKG 315
+++D I+E++ TGKL+KLE ++ V + VWGIG TA+KL+ E G
Sbjct: 431 PAFAQKTSTVRDKIRELLATGKLAKLEELKRKPDVEAVLELSGVWGIGTETARKLHREDG 490
Query: 316 HRTLDDLK-----NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 370
T+ L+ L+ +Q +GL+++++ K RIPR EVE + ++ A V P
Sbjct: 491 VSTVAQLRALAARQPGKLSANQHVGLRFYEEFKERIPRDEVEALAGHVEDAVAAVCPGCS 550
Query: 371 ILCGGSYRRGKASCGDLDVVIMHPD---RKSHKG-----------FLSKYVKKLKEMKFL 416
+ GSYRRGK SCGD+DV++ + R +G L + +L+ +
Sbjct: 551 VTVAGSYRRGKTSCGDVDVLLCPSEEFIRGGSQGAPGATVDTVEDILPAVLARLRTRGVV 610
Query: 417 REDLIFSTHSE-----------------------------------------EVYPRDIY 435
+DL T S + Y D
Sbjct: 611 TDDLSTGTVSWMGVARLPDSRERLAPTTTDGAEGDGAVAVVTPKRLHRRMDIKTYTPDEM 670
Query: 436 AFGLIAWTGNDVLNRRLRLLAE-SKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKE 494
F L+ +TG+ NR +R A+ +KG L D G F G+ + A KF E++
Sbjct: 671 PFALLYFTGSGYFNRSMRTWADKAKGLSLHDRG-FNLVRGN----DMTAVRDAKFRDERD 725
Query: 495 VFDFLGFPWLEPHERNL 511
VF++LG ++ P +R++
Sbjct: 726 VFEYLGLEYVPPEDRSV 742
>gi|74136105|ref|NP_001027915.1| terminal deoxynucleotidyl transferase [Takifugu rubripes]
gi|38603668|dbj|BAD02935.1| terminal deoxynucleotidyl transferase [Takifugu rubripes]
Length = 498
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/356 (26%), Positives = 151/356 (42%), Gaps = 63/356 (17%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
+ N T+ F L Y D R ++ +A V++ LP + S ++ LP +G +
Sbjct: 152 NYNVVFTDAFEVLAECYEFNQMDGRCLAFRRAASVLKSLPRGLSSLEETHSLPCLGGHAK 211
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I EI+ G+ +E DE+ +T+ LF V+G+GP TA+K Y G R+LD + + S
Sbjct: 212 AIIGEILQHGRAFDVEKVLSDERYQTLKLFTSVYGVGPKTAEKWYRSGLRSLDHILADQS 271
Query: 328 --LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L H Q+ G ++ DI + + E + + + + + + P+ ++ G +RRGK
Sbjct: 272 IQLNHMQQNGFLHYGDISRAVSKAEARALTKAIGETVQAITPDALLALTGGFRRGKEFGH 331
Query: 386 DLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLRE--------DLI-FSTHSEEVY------ 430
D+D++ + + L +K L++ L DL THS E
Sbjct: 332 DVDIIFTTLELGMEENLLLAVIKSLEKQGILLYCDYQASTFDLTKLPTHSFEAMDHFAKC 391
Query: 431 -----------------------------------PRDIYAFGLIAWTGNDVLNRRLRLL 455
P D YAF L+ WTG+ R LR
Sbjct: 392 FLILRLEASQVEEGLNSPVEDIRGWRAVRVDLVSPPVDRYAFALLGWTGSRQFERDLRRF 451
Query: 456 A-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
A + + LD+ GL+ T L TEK++FD LG ++EP +RN
Sbjct: 452 ARKERRMLLDNHGLYDKT----------KEEFLAAGTEKDIFDHLGLEYMEPWQRN 497
>gi|367024231|ref|XP_003661400.1| hypothetical protein MYCTH_2300738 [Myceliophthora thermophila ATCC
42464]
gi|347008668|gb|AEO56155.1| hypothetical protein MYCTH_2300738 [Myceliophthora thermophila ATCC
42464]
Length = 636
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/378 (24%), Positives = 165/378 (43%), Gaps = 28/378 (7%)
Query: 85 VIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSHRKKIK 144
V+R W DS++ G+ + D Y + + + + + R
Sbjct: 140 VVRLGWFTDSVKAGQVLPIDDYVVYQGRKVPRTPAKAPQPVPAERAAERAADVMKRALAD 199
Query: 145 SSTE-----DVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASP--DF--SSH 195
+ + ++G+ T S P+ ++ + A P DF +++
Sbjct: 200 AGGQSRSPRPGSSSSRGARGETYT---SHPVRPPLVRQTTSEHEIDAQLPPIPDFLHTTY 256
Query: 196 HITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESAD- 254
P+ ++ P N+ E K+ +G+ +Y AI I P+ ++A
Sbjct: 257 SCQRPTPVHPP---NEAFIEELAKIKTARTLVGDKIGVRAYSSAIATIAAYPYTFQTAQE 313
Query: 255 ----QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 310
+V LPG G + QE TG++ + E D K+ + LF +WG+ TA+
Sbjct: 314 NRSTEVSRLPGCGNKIALLFQEFKDTGQIREAREDESDPKLAVLKLFYNIWGVAETTARD 373
Query: 311 LYEKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE 368
Y +G R LDD+ ++LT Q++G+KY+D+ + RIPR EVE + ++ ++
Sbjct: 374 FYNRGWRDLDDIVEYGWETLTRVQQIGVKYYDEFQQRIPRAEVEAIANVILAHANQIRDG 433
Query: 369 VIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE 428
++ G YRRGK + GD+DVV+ H D + + F+ + V +L+ ++ L ST + E
Sbjct: 434 FEMVIVGGYRRGKEASGDVDVVLSHRDESATRDFVGRLVVRLERAGYVTHTLSLSTANSE 493
Query: 429 VYPRDIYAFGLIAWTGND 446
++W GND
Sbjct: 494 ------RGQVPVSWKGND 505
>gi|311271684|ref|XP_003133204.1| PREDICTED: DNA nucleotidylexotransferase-like [Sus scrofa]
Length = 510
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/357 (25%), Positives = 160/357 (44%), Gaps = 64/357 (17%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
+ N T+ F L Y + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NCNHIFTDAFEVLAENYEFRENETFCLAFMRAASVLKSLPFTIISMKDTEGIPCLGDKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T+++ + G R+L ++++ +
Sbjct: 223 CVIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSERWFRMGFRSLSKIRSDKT 282
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A + LP+ + G +RRGK
Sbjct: 283 LKFTRMQKAGFLYYEDLVSCVTRAEAEAVGVLVKEAVQAFLPDAFVTMTGGFRRGKKMGH 342
Query: 386 DLDVVIMHPDRK--SHKGFLSKYVKKL-KEMKFLREDLIFST---------------HSE 427
D+D +I P + L K V +E L DL+ ST H +
Sbjct: 343 DVDFLITSPGSTDDEEQQLLPKVVNLWEREGLLLYCDLVESTLEKSKLPSRNVDALDHFQ 402
Query: 428 EVY---------------------------------PRDIYAFGLIAWTGNDVLNRRLRL 454
+ + P ++ AF L+ WTG+ R LR
Sbjct: 403 KCFLILKLHHQRVDSGMSSQQEGKTWKAIRVDLVMCPYELRAFALLGWTGSRQFERDLRR 462
Query: 455 LA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
A + LD+ L+ T R LK ++E+E+F LG +LEP ERN
Sbjct: 463 YATHERKMILDNHALYDKT----------KRIFLKAESEEEIFAHLGLDYLEPWERN 509
>gi|196013715|ref|XP_002116718.1| hypothetical protein TRIADDRAFT_60774 [Trichoplax adhaerens]
gi|190580696|gb|EDV20777.1| hypothetical protein TRIADDRAFT_60774 [Trichoplax adhaerens]
Length = 525
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 122/559 (21%), Positives = 225/559 (40%), Gaps = 122/559 (21%)
Query: 18 IFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL--AMDLEALLQQVSK 75
IF + V++V + N+R+Q +Q + G + E S KVTH++ ++ + +
Sbjct: 24 IFHDICVYIVPIKLPNQRVQFLKQLAAKKGFPIAESYSPKVTHIVTAVTSIDRIKAHLDS 83
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDG 135
+++ + + V+ +WL S G+ + DR
Sbjct: 84 ENINKVE--VVSVEWLTTSFTDGQPT--------------RVTDRF-------------- 113
Query: 136 ESSHRKKIKSSTEDVEHFQA-ESKGDVETNA-LSEAPNSPMSSESLTNTLSTASASPDFS 193
+ + + +E F A + + +E N LS+ SS LT + D
Sbjct: 114 -----RLVPKKSLSLERFSAFDRQASLENNTQLSDGSADGESSLQLTKYECQRVTTLDHY 168
Query: 194 SHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESA 253
+ + + L E LI ++ G R+ ++ ++ ++ LP +IE+
Sbjct: 169 NRKLVEALELL----------ESHALLIGGEQSQG---RALAFKRSSTAMKGLPKEIENV 215
Query: 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313
D++ L +G I EI+T G ++E E + LF ++G+GP TA+ Y+
Sbjct: 216 DEISSLRHLGNHSLRIIGEILTKGYSDEVEQIRNSEFYKATKLFNNIFGVGPTTARYWYD 275
Query: 314 KGHRTLDDLKNED--SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII 371
KG RT DDL+N + LT Q+ GL +D++ + + +++ ++Q + +LP
Sbjct: 276 KGLRTFDDLRNSEIIKLTDRQQSGLDNYDELCEPVTLEQAQRIRDMVQNEIDIILPGTKS 335
Query: 372 LCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFL--REDLIFSTHSEEV 429
+ G +RRGK + D D++I HP+ +G L+K V +L+ ++ +E + +++E
Sbjct: 336 MLVGGHRRGKKAGHDTDILIWHPEEGKERGLLTKLVDRLELKGYIKYKEMINIDANTDEA 395
Query: 430 YPR-------------------------DIYAF--------------------------- 437
+ R I++F
Sbjct: 396 FLRRTNSRGLSDIKEKPGKAMDHLERCFGIFSFPRTLLQLPQNDDNPSAARRVDLIVTPA 455
Query: 438 -----GLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTE 492
L+ WTGN NR LRL A + S R + L TE
Sbjct: 456 SQWAYALVGWTGNKQYNRSLRLYAWKE---------LQINLSSHAAFDCREQKLLPASTE 506
Query: 493 KEVFDFLGFPWLEPHERNL 511
+++F++L + EP ERN
Sbjct: 507 QDIFNYLKLTYREPWERNC 525
>gi|440792209|gb|ELR13437.1| DNA polymerase beta, putative [Acanthamoeba castellanii str. Neff]
Length = 348
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 119/231 (51%), Gaps = 30/231 (12%)
Query: 196 HITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQ 255
H T L + N+ +T I +L I ++ G+ R+ +Y KA+ + P I S +
Sbjct: 8 HQTSEVTLEKHDNYNQKLTAILAELGQIEKSKGQMHRARAYEKAVRALRNHPTAITSGTE 67
Query: 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKG 315
+ L GIGK + I EI+ TGKL KL+ +D K + ++LF ++
Sbjct: 68 AQKLDGIGKKIGLKIDEILATGKLKKLDTLNEDPKTKALNLFQQL--------------- 112
Query: 316 HRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGG 375
+ + TH QR+GLK+F + RIPR E+EQ+E+++++ EV E+I G
Sbjct: 113 ---------KHTFTHHQRIGLKHFHEFNERIPRAEMEQLEKIIKETLSEVDEELIGTTCG 163
Query: 376 SYRRGKASCGDLDVVIMHP------DRKSHKGFLSKYVKKLKEMKFLREDL 420
SYRRG S GD+DV++ HP +K +LS+ V+ LK + +D+
Sbjct: 164 SYRRGAESSGDIDVLLTHPKYTVATKKKPEAQYLSRVVEALKRKGLITDDI 214
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 6/83 (7%)
Query: 429 VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLK 488
V P + Y GL+ +TG+D N+++R +A +G+ L++ + P GS G +G ++
Sbjct: 272 VIPYENYYCGLLYFTGSDFFNQQMRKIALDRGFTLNEYDVCPV--GSTGVKG----DPIE 325
Query: 489 FDTEKEVFDFLGFPWLEPHERNL 511
+E+++F+ LG + P +RNL
Sbjct: 326 VHSEEDIFELLGMTYKSPEQRNL 348
>gi|348504248|ref|XP_003439674.1| PREDICTED: DNA-directed DNA/RNA polymerase mu-like [Oreochromis
niloticus]
Length = 498
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/358 (24%), Positives = 159/358 (44%), Gaps = 67/358 (18%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N N+T+ L ED R ++ +A +++ LP ++ S Q++GLP +G+
Sbjct: 150 NSNLTDALSLLAENAELSNEDGRGVAFRRAAALLKALPTQVISMSQLRGLPCLGEHSLRV 209
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 328
I++++ G S++E ++ ++ + + + ++G+G TA + +G L+ L++ +L
Sbjct: 210 IKDVLENGVSSEVESTKQSKRYKALKILTGIFGVGAKTADRWIREGIYNLEQLRDSGQTL 269
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
+Q+ GL+++DD+ + + E + + ++QKA VLP + G +RRGK + D+D
Sbjct: 270 NRAQKAGLEHYDDLNEPVTKAEADAIGEIVQKAVNSVLPGSEVALTGGFRRGKLTGHDVD 329
Query: 389 VVIMHPDRKSHKGFLSKYVKKLKEMKFL----------------------------REDL 420
+I HP+ G + K V L+ FL R
Sbjct: 330 FLITHPEEGKEVGLMPKVVAWLESQGFLLYQKTTRNSYLESKDGPARPASNMDRFERCFS 389
Query: 421 IF---------STH--------SEEVY----------PRDIYAFGLIAWTGNDVLNRRLR 453
IF STH S +++ P +AF ++ WTG+ + R LR
Sbjct: 390 IFKLTKRKEQESTHKNYQMEAASHKIWRAVRVDLVVSPISQFAFAVLGWTGSKLFERELR 449
Query: 454 LLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
A K L LF T L+ +E+E+F +LG ++ P ERN
Sbjct: 450 RWAGHEKNMSLSSHALFDNTQNK----------YLRATSEEEIFAYLGLEYIPPSERN 497
>gi|110645438|gb|AAI18907.1| Unknown (protein for IMAGE:7690143) [Xenopus (Silurana) tropicalis]
Length = 538
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 108/202 (53%), Gaps = 1/202 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
NK IT+ L G + R + +A V++ LPF+++S ++VK LP G Q
Sbjct: 192 NKEITDALEILALSASFQGSEARFLGFTRASSVLKSLPFRLQSVEEVKDLPWCGGHSQTV 251
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-EDSL 328
IQEI+ G ++E + E +++ ++G+G TA K Y G R+L DL N L
Sbjct: 252 IQEILEDGVCREVETVKNSEHFQSMKALTSIFGVGIRTADKWYRDGVRSLSDLNNLGGKL 311
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
T Q+ GL ++ D++ + R E +E+L++ A + +PEV + G +RRGK D+D
Sbjct: 312 TAEQKAGLLHYTDLQQSVTREEAGTVEQLVKGALQSFVPEVRVTMTGGFRRGKQEGHDVD 371
Query: 389 VVIMHPDRKSHKGFLSKYVKKL 410
+I HPD K+ G L K V L
Sbjct: 372 FLITHPDEKALNGLLRKAVAWL 393
Score = 45.8 bits (107), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 18/102 (17%)
Query: 410 LKEMKFLREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGL 468
L+ K +R DL+ +SE Y + L+ WTG+ R LR + K L+ GL
Sbjct: 453 LRNWKAVRVDLVVCPYSE-------YFYALLGWTGSKHFERELRRFSLHVKKMSLNSHGL 505
Query: 469 FPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
F ++ + +E+E+F LG P++ P ERN
Sbjct: 506 F----------DIQKKCHHPATSEEEIFAHLGLPYVLPSERN 537
>gi|332239611|ref|XP_003268994.1| PREDICTED: DNA-directed DNA/RNA polymerase mu [Nomascus leucogenys]
Length = 522
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 89/351 (25%), Positives = 156/351 (44%), Gaps = 60/351 (17%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N ++E L G + R ++ +A V++ L + + Q++GLP +G+
Sbjct: 181 NTGLSEALETLAEAAGFEGSEGRLLTFCRAASVLKALASPVTTLSQLQGLPHLGEHSSRV 240
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NEDSL 328
+QE++ G ++E + E+ +T+ LF +++G+G TA + Y +G RTLDDL+ L
Sbjct: 241 VQELLEHGVCEEVERVRRSERYQTMKLFTQIFGVGVRTADRWYREGLRTLDDLRQQPQKL 300
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
T Q+ GL++ D+ T + R +V+ +++ +++A + LP + G +RRGK D+D
Sbjct: 301 TQQQKAGLQHHRDLSTPVLRSDVDALQQAVEEAVGQALPGATVTLTGGFRRGKLQGHDVD 360
Query: 389 VVIMHPDRKSHKGFLSKYVKKLKEM--------------------------KFLREDLIF 422
+I HP G L + ++ L++ F R IF
Sbjct: 361 FLITHPKEGQEAGLLPRVMRCLQDQGLILYHQHQHSHLESPTRLAQQSHMDAFERSFCIF 420
Query: 423 ------------STHSEE----------VYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESK 459
ST V P + F L+ WTG+ + R LR + + K
Sbjct: 421 RLPQPPGAAVGGSTRPCPSWKAVRVDLVVAPISQFPFALLGWTGSKLFQRELRRFSRKEK 480
Query: 460 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
G L+ GLF +T +E+++F LG +L P +RN
Sbjct: 481 GLWLNSHGLF----------DPEQKTFFHAASEEDIFRHLGLEYLPPEQRN 521
>gi|431909928|gb|ELK13024.1| DNA polymerase mu [Pteropus alecto]
Length = 515
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 120/228 (52%), Gaps = 11/228 (4%)
Query: 200 PSLLYNPPDLNKNITEIFGKLINIYRAL----------GEDRRSFSYYKAIPVIEKLPFK 249
PSL++ PP + T + ++ AL G + R ++ +A +++ P
Sbjct: 128 PSLVWMPPYACQRPTPLTHHNTSLSEALEMLAEAAGFDGSEGRVLAFSRAASMLKAFPGP 187
Query: 250 IESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQ 309
+ + Q++GLP G+ +QE++ G+ ++E + R++ LF ++G+G TA
Sbjct: 188 VTALSQLQGLPHFGEHSCRVVQELLDRGECVEVERVRLSARYRSMKLFTGIFGVGVRTAD 247
Query: 310 KLYEKGHRTLDDLKNE-DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE 368
+ Y +G RTLDD++ + LT Q+ GL++ D+ T + R + E ++++++ A E+ LP
Sbjct: 248 RWYREGLRTLDDVRGQVQRLTQQQKAGLRHHADLSTPVQRPDAEALQQVVEAAVEQALPG 307
Query: 369 VIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFL 416
+ G +RRGK D+D +I HP+ G LS+ + LKE +
Sbjct: 308 ATVTLAGGFRRGKLQGHDVDFLITHPEEGQEVGLLSRVMHSLKEQGLV 355
>gi|281348517|gb|EFB24101.1| hypothetical protein PANDA_005205 [Ailuropoda melanoleuca]
Length = 509
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 94/357 (26%), Positives = 159/357 (44%), Gaps = 64/357 (17%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
+ N T+ F L Y + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 162 NCNHIFTDAFEVLAENYEFRENEVFCLAFMRAASVLKSLPFTIISMKDTEGIPCLGDKVK 221
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL +K++ +
Sbjct: 222 CVIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKIKSDKT 281
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 282 LKFTPMQKAGFLYYEDLVSCVTRAEAEAVGVLVKEAVWAFLPDAFVTMTGGFRRGKKIGH 341
Query: 386 DLDVVIMHP------------------DRKS---HKGFLSKYVKKLKEMK--------FL 416
D+D +I P +RK + F+ +KLK F
Sbjct: 342 DVDFLITSPGSTDEDEEQLLPKVINLWERKGLLLYCDFVESTFEKLKTPSRKVDALDHFQ 401
Query: 417 REDLIFSTHSEEV----------------------YPRDIYAFGLIAWTGNDVLNRRLRL 454
+ LI H + V P + AF L+ WTG+ R LR
Sbjct: 402 KCFLILKLHHQRVDSGKCSQQDGKTWKAIRVDLVMCPYERRAFALLGWTGSRQFERDLRR 461
Query: 455 LA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
A + LD+ L+ T + LK ++E+E+F LG ++EP ERN
Sbjct: 462 YATHERKMMLDNHALYDKT----------KKIFLKAESEEEIFAHLGLDYIEPWERN 508
>gi|54304021|emb|CAH59753.1| DNA polymerase lambda [Homo sapiens]
Length = 211
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 109/211 (51%), Gaps = 23/211 (10%)
Query: 314 KGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILC 373
+G + +D++++ SLT Q +G K++ D R+PR E ++E+ +QKA + + +
Sbjct: 1 QGFXSXEDIRSQASLTTQQAIGXKHYSDFLERMPREEATEIEQTVQKAAQAFNSGXLCVA 60
Query: 374 GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE----- 428
GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ + +
Sbjct: 61 CGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYL 120
Query: 429 ------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 470
V P +A L+ +TG+ NR +R LA++KG L + L
Sbjct: 121 GVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALST 180
Query: 471 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGF 501
A + V L TEK+VF LG
Sbjct: 181 AVVRNTHGCKVGPGRVLPTPTEKDVFRLLGL 211
>gi|112734841|ref|NP_001036693.1| DNA nucleotidylexotransferase isoform 2 [Mus musculus]
gi|12802443|gb|AAK07885.1|AF316015_1 terminal deoxynucleotidyl transferase short isoform [Mus musculus]
gi|74137150|dbj|BAE21978.1| unnamed protein product [Mus musculus]
Length = 510
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 94/357 (26%), Positives = 161/357 (45%), Gaps = 68/357 (19%)
Query: 212 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N ++F ++I E R + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NYNQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLPFPITSMKDTEGIPCLGDKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+ I+ G+ S+ + DE+ ++ LF V+G+G TA+K + G RTL ++++ S
Sbjct: 223 SIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQSDKS 282
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ ++ G +RRGK +
Sbjct: 283 LRFTQMQKAGFLYYEDLVSCVNRPEAEAVSMLVKEAVVTFLPDALVTMTGGFRRGKMTGH 342
Query: 386 DLDVVIMHPD--RKSHKGFLSKYVKKLKEMK-FLREDLIFST------------------ 424
D+D +I P+ + L K K+ L D++ ST
Sbjct: 343 DVDFLITSPEATEDEEQQLLHKVTDFWKQQGLLLYCDILESTFEKFKQPSRKVDALDHFQ 402
Query: 425 -------------HSEE-----------------VYPRDIYAFGLIAWTGNDVLNRRLRL 454
HSE+ + P D AF L+ WTG+ R LR
Sbjct: 403 KCFLILKLDHGRVHSEKSGQQEGKGWKAIRVDLVMCPYDRRAFALLGWTGSRQFERDLRR 462
Query: 455 LA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
A + LD+ L+ T R L+ ++E+E+F LG ++EP ERN
Sbjct: 463 YATHERKMMLDNHALYDRT----------KRVFLEAESEEEIFAHLGLDYIEPWERN 509
>gi|25187910|emb|CAA48634.2| deoxynucleotidyltransferase [Mus musculus]
Length = 510
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 94/357 (26%), Positives = 161/357 (45%), Gaps = 68/357 (19%)
Query: 212 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N ++F ++I E R + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NYNQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLPFPITSMKDTEGIPCLGDKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+ I+ G+ S+ + DE+ ++ LF V+G+G TA+K + G RTL ++++ S
Sbjct: 223 SIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQSDKS 282
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ ++ G +RRGK +
Sbjct: 283 LRFTQMQKAGFLYYEDLVSCVNRPEAEAVSMLVKEAVVTFLPDALVTMTGGFRRGKMTGH 342
Query: 386 DLDVVIMHPD--RKSHKGFLSKYVKKLKEMK-FLREDLIFST------------------ 424
D+D +I P+ + L K K+ L D++ ST
Sbjct: 343 DVDFLITSPEATEDEEQQLLHKVTDFWKQQGLLLYCDILESTFEKFKQPSRKVDALDHFQ 402
Query: 425 -------------HSEE-----------------VYPRDIYAFGLIAWTGNDVLNRRLRL 454
HSE+ + P D AF L+ WTG+ R LR
Sbjct: 403 KCFLILKLDHGRVHSEKSGQQEGKGWKAIRVDLVMCPYDRRAFALLGWTGSRQFERDLRR 462
Query: 455 LA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
A + LD+ L+ T R L+ ++E+E+F LG ++EP ERN
Sbjct: 463 YATHERKMMLDNHALYDRT----------KRVFLEAESEEEIFAHLGLDYIEPWERN 509
>gi|18655690|pdb|1JMS|A Chain A, Crystal Structure Of The Catalytic Core Of Murine Terminal
Deoxynucleotidyl Transferase
Length = 381
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 94/357 (26%), Positives = 161/357 (45%), Gaps = 68/357 (19%)
Query: 212 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N ++F ++I E R + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 34 NYNQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLPFPITSMKDTEGIPCLGDKVK 93
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+ I+ G+ S+ + DE+ ++ LF V+G+G TA+K + G RTL ++++ S
Sbjct: 94 SIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQSDKS 153
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ ++ G +RRGK +
Sbjct: 154 LRFTQMQKAGFLYYEDLVSCVNRPEAEAVSMLVKEAVVTFLPDALVTMTGGFRRGKMTGH 213
Query: 386 DLDVVIMHPD--RKSHKGFLSKYVKKLKEMK-FLREDLIFST------------------ 424
D+D +I P+ + L K K+ L D++ ST
Sbjct: 214 DVDFLITSPEATEDEEQQLLHKVTDFWKQQGLLLYCDILESTFEKFKQPSRKVDALDHFQ 273
Query: 425 -------------HSEE-----------------VYPRDIYAFGLIAWTGNDVLNRRLRL 454
HSE+ + P D AF L+ WTG+ R LR
Sbjct: 274 KCFLILKLDHGRVHSEKSGQQEGKGWKAIRVDLVMCPYDRRAFALLGWTGSRQFERDLRR 333
Query: 455 LA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
A + LD+ L+ T R L+ ++E+E+F LG ++EP ERN
Sbjct: 334 YATHERKMMLDNHALYDRT----------KRVFLEAESEEEIFAHLGLDYIEPWERN 380
>gi|326437287|gb|EGD82857.1| DNA polymerase beta, variant [Salpingoeca sp. ATCC 50818]
Length = 259
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 122/245 (49%), Gaps = 41/245 (16%)
Query: 300 VWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQ 359
V G GPA A+K ++G TL++L + LT +QR+GLK+ D + RIPR EV+++ +
Sbjct: 21 VVGFGPAAARKFVDQGVTTLEELAKQSGLTSTQRIGLKHHHDFEERIPRDEVDRLRKQAF 80
Query: 360 KAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKS-HK------------GFLSKY 406
EV P++ GSYRRG +S GD+D+++ HP+ S HK G L+K
Sbjct: 81 AIISEVDPKLTAEVCGSYRRGASSSGDIDILMTHPEFTSEHKDEKGKITKPRFAGLLAKV 140
Query: 407 VKKLKEMKFLREDLI----------------------FSTHSEEVYPRDIYAFGLIAWTG 444
V +++ KF+ + L + +P D Y L+ +TG
Sbjct: 141 VAAMQKHKFVTDSLSCGQTKFMGVCRDREAPKAGEGKYRRIDVRFWPADQYPLALLYFTG 200
Query: 445 NDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWL 504
+D LN+ +R A G+ L++ + P G G G +L EK+VFD+L +L
Sbjct: 201 SDELNKDMRRKAIDLGFHLNEYAIRP--MGEKGTMG----DALPVTCEKDVFDYLDMKYL 254
Query: 505 EPHER 509
EP ER
Sbjct: 255 EPSER 259
>gi|190339956|gb|AAI63775.1| Dntt protein [Danio rerio]
Length = 486
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 123/538 (22%), Positives = 215/538 (39%), Gaps = 121/538 (22%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHL 78
F+ + +FLVEK + R G V++ LS VTHV++ L A Q L
Sbjct: 23 FSDVTLFLVEKRMGKSRRTFLSSLARSKGFCVDDALSGAVTHVVSEGLSA-------QDL 75
Query: 79 ARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEG--ENIADRVLSQIQGNGNTSSDGE 136
+ WLED +G E + VL N + ++
Sbjct: 76 ---------WLWLED-------------------QGFQETHSKHVL-----NISWFTESM 102
Query: 137 SSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHH 196
S+ R T +++ A+ + V +A E+ SP + + T +H
Sbjct: 103 SAGRPLPVEDTHCIQNPAADQRSCVHLSATPESAVSPYACQRRTT----------LENH- 151
Query: 197 ITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQV 256
NK TE L G + +A V++ LP + S ++
Sbjct: 152 -------------NKIFTEALEVLALNSEFSGNQGSCLGFRRAASVLKSLPAALRSPEEA 198
Query: 257 KGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH 316
LP +G + + ++EI G S++E + D++ RT+ LF V+G+GP TA+ + +
Sbjct: 199 LRLPCLGDNSRAVLEEICECGSSSRVEEIQNDQRYRTMKLFCSVFGVGPKTAESWFCREL 258
Query: 317 RTLDDLKNEDS--LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCG 374
RT + + E S L Q G +++DI + R E ++ ++++A + P +
Sbjct: 259 RTFEQVLTEPSIRLNRMQTAGFLFYEDISVPVSRAEAAALKMMMEEALLFINPSATVTIT 318
Query: 375 GSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEM--------------------- 413
G +RRGK D+D +I P+ + + L +K+ K
Sbjct: 319 GGFRRGKEFGHDVDFIIKAPEGQEDR-ILPAVIKRFKSQNVLLYSDFQKSTFDLRQLPNH 377
Query: 414 ------KFLREDLIFSTHSEE--------------VYPRDIYAFGLIAWTGNDVLNRRLR 453
+F + L+ ++E V P + + + L+ WTG+ + R LR
Sbjct: 378 RFEAMDRFSKCFLLVKLQTQESRTGRNWRAVRVDLVAPLERFPYALLGWTGSTLFERDLR 437
Query: 454 LLAE-SKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
A +G LD+ L+ T +T L +TE+++F LG ++EP +RN
Sbjct: 438 RFARLERGKLLDNHTLYDKT----------TKTFLPANTEEDIFQHLGLEYIEPWQRN 485
>gi|330935988|ref|XP_003305205.1| hypothetical protein PTT_17985 [Pyrenophora teres f. teres 0-1]
gi|311317881|gb|EFQ86703.1| hypothetical protein PTT_17985 [Pyrenophora teres f. teres 0-1]
Length = 709
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 102/397 (25%), Positives = 168/397 (42%), Gaps = 77/397 (19%)
Query: 184 STASASPDFSSHHITDPSLLYNPPD-LNKNITEIFGKLINIYRALGEDRRSFSYYKAIPV 242
S ASPD+ +++ + P + N+ E K+ + +D +Y I
Sbjct: 316 SDIPASPDWVKNYVKYSCQRFTPANGPNEEFLEQLKKIRTARTLIDDDIGVRAYSTIIAS 375
Query: 243 IEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWG 302
I PF++ ++ LPG + E TGK+ +E ++ DE ++ + F +WG
Sbjct: 376 IAAYPFELSHPRELARLPGCDEKTAALFVEWKNTGKIQAVEDYDNDEAMKVLRCFYNIWG 435
Query: 303 IGPATAQKLYEKGHRT-LDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQ 359
+G TA+ Y H T LDDL + L Q++G+KY++++ IPR EVE++ +++
Sbjct: 436 VGAKTARHFYYNNHWTELDDLVEYGWNDLERVQQIGVKYYEELLLPIPRDEVERIGAIVR 495
Query: 360 KAGEEVL----PEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKF 415
E V+ V + G YRRGKA GD+D+++ HPD KS G + + V+ L+E +
Sbjct: 496 ---EHVVRLRDDRVTVTLVGGYRRGKAESGDVDMIVSHPDVKSTAGLVREIVESLEETGW 552
Query: 416 LREDLIFS----THSEEVYP-RDIYAFG---------LIAW------------------- 442
+ L S ++V P R A G L+ W
Sbjct: 553 ITHTLTMSLTNTARGQQVLPFRSTRAAGAGFDTLDKALVVWQDPTWPTRERDLAENPKAK 612
Query: 443 -------------------------TGNDVLNRRLRLLAES-KGYRLDDTGLFPATYGS- 475
+G R LR A++ KG++ D +G+ + G
Sbjct: 613 NPAIHRRLDIIIAPWRTVGCAVMGWSGGTTFQRDLRRYAKAVKGWKFDSSGIRSRSTGEV 672
Query: 476 ---GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
G GV D EK+VF+ LG ++ P R
Sbjct: 673 IMLEGPDGVDGTPE---DAEKKVFEGLGLEYIPPEYR 706
>gi|392591052|gb|EIW80380.1| Nucleotidyltransferase [Coniophora puteana RWD-64-598 SS2]
Length = 596
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 96/364 (26%), Positives = 160/364 (43%), Gaps = 83/364 (22%)
Query: 219 KLINIYRAL-GEDRRSFSYYKAIPVIEKLP--FKIESAD-QVKGLPGIGKSMQDHIQEIV 274
K+I + R L GE+R SY +AI +I+ P +E D +V+ LP +G + I+E V
Sbjct: 241 KIIQLSRKLEGEERSMLSYQRAIAMIKSYPHIITLERLDNEVEDLPYLGTKLVAMIEEYV 300
Query: 275 TTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL------------ 322
T GK+S+ E + + + +S F ++GIGP T ++LY+ G RTL++L
Sbjct: 301 TLGKISEAESIRESSRFQALSAFSRIYGIGPHTGRRLYDLGLRTLEELDRYYEVTPGSTD 360
Query: 323 ------------KNEDS-LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEV 369
NE++ L + ++ L D+ I RHE E++ ++L V
Sbjct: 361 GSALSSLELYSKANEETVLEETIKVALALRHDLCQTISRHEAERIGQILDSELAHVEQGC 420
Query: 370 IILCGGSYRRGKASCGDLDVVIMHPD----RKSHKGFLSKYVKKLKEMKFLREDL----- 420
L G YRRGK D+D++I HP+ + + + V+ L+E L +
Sbjct: 421 RTLLVGGYRRGKVQGNDVDILITHPNWTLGSQKSRNMSKRLVQSLRERGILVHVMHLAGF 480
Query: 421 ----IFSTHSEEVYPR-----------------------------DIYAFGLIAWTGNDV 447
+ TH + + +++ ++ WTG+ +
Sbjct: 481 HGHNVLRTHHWDSLEKALTILRVPSAGDAVNAPVHRQVDLIFAAPEVFWTAVVGWTGSTM 540
Query: 448 LNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFD-TEKEVFDFLGFPWLEP 506
R LRL A+ +G + D +G+ R + L F TE+EVFD L P++ P
Sbjct: 541 FERDLRLWAKERGMKFDSSGI-----------SRRHDSKLFFPRTEREVFDLLELPYIHP 589
Query: 507 HERN 510
RN
Sbjct: 590 ALRN 593
>gi|412990966|emb|CCO18338.1| DNA polymerase lambda [Bathycoccus prasinos]
Length = 739
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 92/383 (24%), Positives = 170/383 (44%), Gaps = 52/383 (13%)
Query: 172 SPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGK----LINIYRAL 227
+ M S+ N + H + P+ D NK++ ++F L ++Y
Sbjct: 365 ASMESDVRQNYYHSLENMKKIKKHFMCQPAERVGNQDANKSLIDMFSNYGALLQDMYPDN 424
Query: 228 GEDR-RSFSYYKAIPVIEKLPFKIESAD-------QVKGLPGIGKSMQDHIQEIVTTGKL 279
+ R R +Y K ++E P+++ + +G G+G+SM + ++ V+ L
Sbjct: 425 KQQRGRGNAYVKIARLLESTPYELTPNNIDDFIEKNRRGGQGMGESMCNKLKYAVSFKVL 484
Query: 280 SKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLDDLKN-------EDSLTHS 331
+ E F KD V + V GIG TA K YE+ + ++++DL+ + L +
Sbjct: 485 PEYEAFLKDPSVIAVKDMSRVHGIGTKTAYKFYERFNLKSVEDLRALLSSGDPNNILKND 544
Query: 332 QRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVI 391
R+ LKY +D++ RIPR E +++ ++++ E ++ + GSYRRGK +CGD+DV++
Sbjct: 545 MRISLKYLEDLEDRIPREEAKEIGDFVRESVENIVKGAQVEVAGSYRRGKPTCGDVDVLV 604
Query: 392 MHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE----------------------- 428
+ + G L V + + L T ++
Sbjct: 605 CLKENQKKDGVLQNIVDDIDRRGLISARLSQGTFGQDNFMGVCKLPDGKENRKHRRLDIK 664
Query: 429 VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLK 488
+Y +A L+ +TG+ NR +R G+ LDD GL+ S + V
Sbjct: 665 IYEPKQFATALLYFTGSGRFNRSMRTYTHMMGWHLDDKGLYMDRNKSRRVETV------- 717
Query: 489 FDTEKEVFDFLGFPWLEPHERNL 511
TE+++F LG ++ P +R++
Sbjct: 718 --TEQDIFAALGLDYVRPQDRSV 738
>gi|112734847|ref|NP_033371.2| DNA nucleotidylexotransferase isoform 1 [Mus musculus]
gi|17380506|sp|P09838.3|TDT_MOUSE RecName: Full=DNA nucleotidylexotransferase; AltName: Full=Terminal
addition enzyme; AltName: Full=Terminal
deoxynucleotidyltransferase; Short=TDT; Short=Terminal
transferase
gi|12802441|gb|AAK07884.1|AF316014_1 terminal deoxynucleotidyl transferase long isoform [Mus musculus]
gi|26352882|dbj|BAC40071.1| unnamed protein product [Mus musculus]
gi|26353776|dbj|BAC40518.1| unnamed protein product [Mus musculus]
gi|148709903|gb|EDL41849.1| deoxynucleotidyltransferase, terminal [Mus musculus]
gi|151556624|gb|AAI48335.1| Deoxynucleotidyltransferase, terminal [synthetic construct]
Length = 530
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 96/367 (26%), Positives = 163/367 (44%), Gaps = 68/367 (18%)
Query: 212 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N ++F ++I E R + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NYNQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLPFPITSMKDTEGIPCLGDKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+ I+ G+ S+ + DE+ ++ LF V+G+G TA+K + G RTL ++++ S
Sbjct: 223 SIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQSDKS 282
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ ++ G +RRGK +
Sbjct: 283 LRFTQMQKAGFLYYEDLVSCVNRPEAEAVSMLVKEAVVTFLPDALVTMTGGFRRGKMTGH 342
Query: 386 DLDVVIMHPD--RKSHKGFLSKYVKKLKEMK-FLREDLIFST------------------ 424
D+D +I P+ + L K K+ L D++ ST
Sbjct: 343 DVDFLITSPEATEDEEQQLLHKVTDFWKQQGLLLYCDILESTFEKFKQPSRKVDALDHFQ 402
Query: 425 -------------HSEE-----------------VYPRDIYAFGLIAWTGNDVLNRRLRL 454
HSE+ + P D AF L+ WTG+ R LR
Sbjct: 403 KCFLILKLDHGRVHSEKSGQQEGKGWKAIRVDLVMCPYDRRAFALLGWTGSRQFERDLRR 462
Query: 455 LA-ESKGYRLDDTGLFPATYGSG----------GKQGVRARTSLKFDTEKEVFDFLGFPW 503
A + LD+ L+ T G K R L+ ++E+E+F LG +
Sbjct: 463 YATHERKMMLDNHALYDRTKGKTVTISPLDGKVSKLQKALRVFLEAESEEEIFAHLGLDY 522
Query: 504 LEPHERN 510
+EP ERN
Sbjct: 523 IEPWERN 529
>gi|21465815|pdb|1KDH|A Chain A, Binary Complex Of Murine Terminal Deoxynucleotidyl
Transferase With A Primer Single Stranded Dna
gi|21465825|pdb|1KEJ|A Chain A, Crystal Structure Of Murine Terminal Deoxynucleotidyl
Transferase Complexed With Ddatp
Length = 363
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 94/357 (26%), Positives = 160/357 (44%), Gaps = 68/357 (19%)
Query: 212 NITEIFGKLINIYRALGEDRR----SFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N ++F ++I E R ++ +A V++ LPF I S +G+P +G ++
Sbjct: 16 NYNQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLPFPITSMKDTEGIPCLGDKVK 75
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+ I+ G+ S+ + DE+ ++ LF V+G+G TA+K + G RTL ++++ S
Sbjct: 76 SIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQSDKS 135
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ ++ G +RRGK +
Sbjct: 136 LRFTQMQKAGFLYYEDLVSCVNRPEAEAVSMLVKEAVVTFLPDALVTMTGGFRRGKMTGH 195
Query: 386 DLDVVIMHPD--RKSHKGFLSKYVKKLKEMK-FLREDLIFST------------------ 424
D+D +I P+ + L K K+ L D++ ST
Sbjct: 196 DVDFLITSPEATEDEEQQLLHKVTDFWKQQGLLLYCDILESTFEKFKQPSRKVDALDHFQ 255
Query: 425 -------------HSEE-----------------VYPRDIYAFGLIAWTGNDVLNRRLRL 454
HSE+ + P D AF L+ WTG+ R LR
Sbjct: 256 KCFLILKLDHGRVHSEKSGQQEGKGWKAIRVDLVMCPYDRRAFALLGWTGSRQFERDLRR 315
Query: 455 LA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
A + LD+ L+ T R L+ ++E+E+F LG ++EP ERN
Sbjct: 316 YATHERKMMLDNHALYDRT----------KRVFLEAESEEEIFAHLGLDYIEPWERN 362
>gi|449277136|gb|EMC85412.1| DNA nucleotidylexotransferase [Columba livia]
Length = 506
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/355 (25%), Positives = 158/355 (44%), Gaps = 63/355 (17%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
+ NK T+ F + Y + S + +A V++ LPF + ++GLP +G ++
Sbjct: 162 NYNKKFTDAFEIMAENYEFKENEIFSLEFQRAASVLKFLPFPVTRMKDIQGLPCMGDRVR 221
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
D I+EI+ G+ S+ + DE+ ++ F V+G+G T++K Y G RTL+++K + +
Sbjct: 222 DVIEEILEEGESSRAKEVLNDERYKSFKQFTSVFGVGVKTSEKWYRMGLRTLEEVKADKT 281
Query: 328 --LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L+ Q+ G Y++D+ + + + E + + +++ LP+ ++ G +RRGK
Sbjct: 282 VKLSKMQKAGFLYYEDLVSCVSKAEADAVNMVVKNTVYTFLPDALVTITGGFRRGKNIGH 341
Query: 386 DLDVVIMHP-----DRKSHKGFLSKYVKKLKEMKFLRE---------------------- 418
D+D +I P D HK L Y + E F +E
Sbjct: 342 DIDFLITSPGSREDDELLHKIGLLLYC-DIVESTFTKEQLPSRQVDAMDNFQKCFAILKL 400
Query: 419 ----------------DLIFSTHSEEV------YPRDIYAFGLIAWTGNDVLNRRLRLLA 456
D+ H + + P + YA+ L+ WTG+ R LR A
Sbjct: 401 CQPRADNSSDNTSKNLDMAEDKHWKAIRVDLVITPFEQYAYALLGWTGSRQFGRDLRRYA 460
Query: 457 -ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+ LD+ L+ T RT LK +E+E+F LG ++EP ERN
Sbjct: 461 THERKMILDNHALYDRT----------KRTFLKAASEEEIFAHLGLDYIEPWERN 505
>gi|116206616|ref|XP_001229117.1| hypothetical protein CHGG_02601 [Chaetomium globosum CBS 148.51]
gi|88183198|gb|EAQ90666.1| hypothetical protein CHGG_02601 [Chaetomium globosum CBS 148.51]
Length = 596
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 118/243 (48%), Gaps = 18/243 (7%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 264
+PP N+ E K I R L DR Y P E+L +V LPG G
Sbjct: 238 HPP--NQGFIEELTK-IKTARTLTGDRIGVRAYSKSPTAERL-------TEVARLPGCGS 287
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-- 322
+ QE TG++ + E D K+ + LF +WG+ TA+ Y +G R LDD+
Sbjct: 288 KIALLFQEFRETGQIREAREDESDPKLAVLKLFYNIWGVAETTARDFYNRGWRDLDDIVE 347
Query: 323 KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA 382
++LT Q++G+KY+++++ IPR EVE + ++ ++ P ++ G YRRGK
Sbjct: 348 YGWETLTRVQQIGVKYYEELQLPIPRAEVESIAGVILAHANQIRPGFEMVIVGGYRRGKT 407
Query: 383 SCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEVYPRDIYAFGLIAW 442
+ GD+DVV+ H D + + + V L+ +++ L +T + E +AW
Sbjct: 408 ASGDVDVVLSHRDEHATHDLVGRLVVALERARYITHTLSLATTNSE------RGQAPVAW 461
Query: 443 TGN 445
GN
Sbjct: 462 KGN 464
>gi|389623977|ref|XP_003709642.1| DNA polymerase beta [Magnaporthe oryzae 70-15]
gi|351649171|gb|EHA57030.1| DNA polymerase beta [Magnaporthe oryzae 70-15]
gi|440474906|gb|ELQ43621.1| DNA polymerase beta [Magnaporthe oryzae Y34]
gi|440487441|gb|ELQ67230.1| DNA polymerase beta [Magnaporthe oryzae P131]
Length = 582
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 102/401 (25%), Positives = 176/401 (43%), Gaps = 56/401 (13%)
Query: 85 VIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADR----VLSQIQGN----------GN 130
V + W DS+ GE + D Y + +G N+ ++QI + G
Sbjct: 109 VAKLAWFTDSIAKGEVLPIDDYVVY---QGINLGREEPFPPINQIAASFKEGAAAKQAGT 165
Query: 131 TSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASP 190
S+ S +++ V H ES T+ A N P L + S +P
Sbjct: 166 GSAHSMPSFKRRRGQPQSYVPHLMPES-----TSEHDAAENLPPIPSFLHSVYSCQRPTP 220
Query: 191 DFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFK 249
NPP N E K I R L D +Y AI + P+
Sbjct: 221 -------------ANPP--NSAFIEQL-KEIRTTRLLNGDSIGVRAYSTAIASLAAYPYG 264
Query: 250 IESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQ 309
+ + +V+ LPG + + QE TGK+ ++E +D +++ + F WG+G TA+
Sbjct: 265 LTTHIEVQRLPGCNEKIAFLYQEWKHTGKIKEVEEATQDPRLKILREFHATWGVGDTTAR 324
Query: 310 KLYEKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
+ Y KG R LDD+ +SLT Q++G+KY+D+++ +I R EVE++ ++ + ++
Sbjct: 325 EWYNKGWRDLDDVVEYGWESLTRVQQIGVKYYDELQLKISREEVEKIANIILQHANKIRS 384
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 427
++ G YRRGK GD+D+++ HPD + F++ V L + ++ L ++ +
Sbjct: 385 GFQMVIVGGYRRGKDESGDVDLILSHPDESATDRFVTMLVDSLSDSDYVTHTLSYTVKNS 444
Query: 428 EVYPRDIYAFGLIAWTGN---------DVLNRRLRLLAESK 459
E + +AW G+ D L++ L + E K
Sbjct: 445 ERGQKP------VAWKGSAPKPHGSGFDTLDKALVVWQEPK 479
>gi|297680548|ref|XP_002818050.1| PREDICTED: DNA-directed DNA/RNA polymerase mu isoform 1 [Pongo
abelii]
Length = 501
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 114/203 (56%), Gaps = 1/203 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N ++E L G + R ++ +A V++ LP + + Q++GLP +G+
Sbjct: 153 NTGLSEALETLAEAAGFEGSEGRLLTFCRAASVLKALPSPVTTLSQLQGLPHLGEHSSRV 212
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 328
+QE++ G ++E + E+ +T+ LF +++G+G TA + Y +G RTLDDL+ + L
Sbjct: 213 VQELLEHGVCEEVERVRRSERYQTMKLFTQIFGVGVRTADRWYREGLRTLDDLREQPQKL 272
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
T Q+ GL++ D+ T + R +V+ +++ +++A +VLP + G +RRG+ + D+D
Sbjct: 273 TQQQKAGLQHHRDLSTPVLRSDVDALQQAVEEAVGQVLPGATVTLTGGFRRGEVAGHDVD 332
Query: 389 VVIMHPDRKSHKGFLSKYVKKLK 411
+I HP G L + ++ L+
Sbjct: 333 FLISHPKEGHEAGLLPRVMRCLQ 355
Score = 42.7 bits (99), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 18/105 (17%)
Query: 407 VKKLKEMKFLREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDD 465
+ K +R DL+ V P + F L+ WTG+ + R LR + + KG L+
Sbjct: 413 TRPCPSWKAVRVDLV-------VAPISQFHFALLGWTGSKLFQRELRRFSRKEKGLWLNS 465
Query: 466 TGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
GLF +T +E+++F LG +L P +RN
Sbjct: 466 HGLF----------DPEQKTFFHAASEEDIFRHLGLEYLPPEQRN 500
>gi|338716705|ref|XP_001501812.3| PREDICTED: DNA nucleotidylexotransferase [Equus caballus]
Length = 508
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/356 (25%), Positives = 156/356 (43%), Gaps = 63/356 (17%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
+ N+ T+ F L Y + ++ +A V++ LPF I S ++G+P + +
Sbjct: 162 NCNQVFTDAFDVLAENYEFRENESSCLTFMRAASVLKSLPFTIISMKDIEGIPCLEDKAK 221
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++++ +
Sbjct: 222 CVIEEIIEDGESSEVKTVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKIRSDKT 281
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 282 LKFTKMQKAGFLYYEDLVSCVTRPEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKIGH 341
Query: 386 DLDVVIMHP--DRKSHKGFLSKYVK---------------------KLKEMK------FL 416
D+D +I P + + LSK + KL K F
Sbjct: 342 DVDFLITSPGSTEEEEQELLSKVINLWERKELLLYYDLVESTFEKSKLPSRKVDALDHFQ 401
Query: 417 REDLIFSTHSEE----------------------VYPRDIYAFGLIAWTGNDVLNRRLRL 454
+ LI H + V P + +AF L+ WTG+ R
Sbjct: 402 KCFLILKLHHQRVDSGKSSQQEGKTWKAIRVDLVVCPYENHAFALLGWTGSRFERDLRRY 461
Query: 455 LAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+ LD+ L+ T R LK ++E+E+F LG ++EP ERN
Sbjct: 462 ATHERKMILDNHALYDKT----------KRIFLKAESEEEIFAHLGLDYIEPWERN 507
>gi|284009756|ref|NP_001164987.1| polymerase (DNA directed), mu [Xenopus (Silurana) tropicalis]
gi|169642654|gb|AAI60552.1| Unknown (protein for MGC:135998) [Xenopus (Silurana) tropicalis]
Length = 406
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 108/202 (53%), Gaps = 1/202 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
NK IT+ L G + R + +A V++ LPF+++S ++VK LP G Q
Sbjct: 60 NKEITDALEILALSASFQGSEARFLGFTRASSVLKSLPFRLQSVEEVKDLPWCGGHSQTV 119
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-EDSL 328
IQEI+ G ++E + E +++ ++G+G TA K Y G R+L DL N L
Sbjct: 120 IQEILEDGVCREVETVKNSEHFQSMKALTSIFGVGIRTADKWYRDGVRSLSDLNNLGGKL 179
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
T Q+ GL ++ D++ + R E +E+L++ A + +P+V + G +RRGK D+D
Sbjct: 180 TAEQKAGLLHYTDLQQSVTREEAGTVEQLIKGALQSFVPDVRVTMTGGFRRGKQEGHDVD 239
Query: 389 VVIMHPDRKSHKGFLSKYVKKL 410
+I HPD ++ G L K V L
Sbjct: 240 FLITHPDEEALNGLLRKAVAWL 261
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 18/102 (17%)
Query: 410 LKEMKFLREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGL 468
L+ K +R DL+ +SE Y + L+ WTG+ R LR + K L+ GL
Sbjct: 321 LRNWKAVRVDLVVCPYSE-------YFYALLGWTGSKHFERELRRFSLHVKKMSLNSHGL 373
Query: 469 FPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
F ++ + +E+E+F LG P++ P ERN
Sbjct: 374 F----------DIQKKCHHPATSEEEIFAHLGLPYVPPSERN 405
>gi|62414130|ref|NP_001014817.1| DNA nucleotidylexotransferase [Danio rerio]
gi|46369889|gb|AAS89780.1| terminal deoxynucleotidyl transferase [Danio rerio]
Length = 487
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 122/539 (22%), Positives = 214/539 (39%), Gaps = 122/539 (22%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHL 78
F+ + +FLVEK + R G V++ LS VTHV++ L A Q L
Sbjct: 23 FSDVTLFLVEKRMGKSRRTFLSSLARSKGFCVDDALSGAVTHVVSEGLSA-------QDL 75
Query: 79 ARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEG--ENIADRVLSQIQGNGNTSSDGE 136
+ WLED +G E + VL N + ++
Sbjct: 76 ---------WLWLED-------------------QGFQETHSKHVL-----NISWFTESM 102
Query: 137 SSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHH 196
S+ R T +++ A+ + V +A E+ SP + + T +H
Sbjct: 103 SAGRPLPVEDTHCIQNPAADQRSCVHLSATPESAVSPYACQRRTT----------LENH- 151
Query: 197 ITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQV 256
NK TE L G + +A V++ LP + S ++
Sbjct: 152 -------------NKIFTEALEVLALNSEFSGNQGSCLGFRRAASVLKSLPAALRSPEEA 198
Query: 257 KGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH 316
LP +G + + ++EI G S++E + D++ RT+ LF V+G+GP TA+ + +G
Sbjct: 199 LRLPCLGDNSRAVLEEICECGSSSRVEEIQNDQRYRTMKLFCSVFGVGPKTAESWFCRGL 258
Query: 317 RTLDDLKNEDS--LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCG 374
+T + + E S L Q G +++DI + R E ++ ++++A + P +
Sbjct: 259 KTFEQVLTEPSIRLNRMQTAGFLFYEDISVPVSRAEAAALKMMMEEALLFINPSATVTIT 318
Query: 375 GSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEM--------------------- 413
G +RRGK D+D +I P+ + + L +K+ K
Sbjct: 319 GGFRRGKEFGHDVDFIIKAPEGQEDR-ILPAVIKRFKSQNVLLYSDFQKSTFDLRQLPNH 377
Query: 414 ------KFLREDLIFSTHSEE---------------VYPRDIYAFGLIAWTGNDVLNRRL 452
+F + L+ +E P + + + L+ WTG+ + R L
Sbjct: 378 RFEAMDRFSKCFLLVKLQMQESRTGRNWRAVRVDLVAPPLERFPYALLGWTGSTLFERDL 437
Query: 453 RLLAE-SKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
R A +G LD+ L+ T +T L +TE+++F LG ++EP +RN
Sbjct: 438 RRFARLERGKLLDNHTLYDKT----------TKTFLPANTEEDIFQHLGLEYIEPWQRN 486
>gi|169621167|ref|XP_001803994.1| hypothetical protein SNOG_13791 [Phaeosphaeria nodorum SN15]
gi|160704194|gb|EAT78815.2| hypothetical protein SNOG_13791 [Phaeosphaeria nodorum SN15]
Length = 710
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 124/240 (51%), Gaps = 7/240 (2%)
Query: 190 PDFSSHHITDPSLLYNPPD-LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLP 247
PD+ +H+ + P + N++ E K + R L +D +Y I I P
Sbjct: 323 PDWVKNHVKYACQRFTPANGPNEDFLEHLKK-VRTARTLIDDEIGVRAYSTIIASIAAYP 381
Query: 248 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307
K+ ++ LPG + E TG++ +E FE DE ++ + F ++WG+G T
Sbjct: 382 HKLSHPRELAQLPGCDEKTAVLFVEWKNTGRIQAVEDFENDEAMKVLRSFYDIWGVGAKT 441
Query: 308 AQKLYEKGHRT-LDDLK--NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEE 364
A+ Y H T LDD+ + L Q++G+KY+D+ IPR EVEQ+ ++++ +
Sbjct: 442 ARHFYYNNHWTELDDVIEFGWNELDRVQQIGVKYYDEFLVPIPRPEVEQIASVVREHAVQ 501
Query: 365 VLPEVI-ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFS 423
+ + I + G YRRGKA+ GD+D+++ HPD +S G + V+ L+E +++ L S
Sbjct: 502 LRDDRISVTIVGGYRRGKAASGDVDMIVSHPDLESTAGLVRDIVESLEEAQWITHTLTMS 561
>gi|402878106|ref|XP_003902744.1| PREDICTED: DNA polymerase beta-like, partial [Papio anubis]
Length = 218
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 106/208 (50%), Gaps = 37/208 (17%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P+KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPYKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLD------- 320
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEGSQLDSC 130
Query: 321 ----------------------------DL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEV 351
DL KNED L H QR+GLKYF D + RIPR E+
Sbjct: 131 PIKGHLNGTKSLLDLIWDVTTIFKLKNADLRKNEDKLNHHQRIGLKYFGDFEKRIPREEM 190
Query: 352 EQMERLLQKAGEEVLPEVIILCGGSYRR 379
QM+ ++ ++V E I GS+RR
Sbjct: 191 LQMQDIVLNEVKKVDSEYIATVCGSFRR 218
>gi|301763246|ref|XP_002917036.1| PREDICTED: DNA nucleotidylexotransferase-like [Ailuropoda
melanoleuca]
Length = 510
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/356 (25%), Positives = 156/356 (43%), Gaps = 63/356 (17%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
+ N T+ F L Y + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 164 NCNHIFTDAFEVLAENYEFRENEVFCLAFMRAASVLKSLPFTIISMKDTEGIPCLGDKVK 223
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL +K++ +
Sbjct: 224 CVIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKIKSDKT 283
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 284 LKFTPMQKAGFLYYEDLVSCVTRAEAEAVGVLVKEAVWAFLPDAFVTMTGGFRRGKKIGH 343
Query: 386 DLDVVIMHP------------------DRKS---HKGFLSKYVKKLKEMK--------FL 416
D+D +I P +RK + F+ +KLK F
Sbjct: 344 DVDFLITSPGSTDEDEEQLLPKVINLWERKGLLLYCDFVESTFEKLKTPSRKVDALDHFQ 403
Query: 417 REDLIFSTHSEEV----------------------YPRDIYAFGLIAWTGNDVLNRRLRL 454
+ LI H + V P + AF L+ WTG+ R
Sbjct: 404 KCFLILKLHHQRVDSGKCSQQDGKTWKAIRVDLVMCPYERRAFALLGWTGSRFERDLRRY 463
Query: 455 LAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+ LD+ L+ T + LK ++E+E+F LG ++EP ERN
Sbjct: 464 ATHERKMMLDNHALYDKT----------KKIFLKAESEEEIFAHLGLDYIEPWERN 509
>gi|344243158|gb|EGV99261.1| DNA nucleotidylexotransferase [Cricetulus griseus]
Length = 432
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 90/302 (29%), Positives = 145/302 (48%), Gaps = 43/302 (14%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
++ +A V+ LPF I S +G+P +G ++ I+ I+ G+ S++ DE+ ++
Sbjct: 147 AFMRAAAVLRSLPFPIISVKDTEGIPCLGDKVKCIIEGIIEDGESSEVIAVLNDERYKSF 206
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL--THSQRLGLKYFDDIKTRIPRHEVE 352
LF V+G+G TA+K + G RTL +K+++SL T Q+ G Y++D+ + + R E E
Sbjct: 207 KLFTSVFGVGLKTAEKWFRMGFRTLSKIKSDESLRFTRMQKAGFLYYEDLVSCVNRAEAE 266
Query: 353 QMERLLQKAGEEVLPEVIILCGGSYRR-GKASCGDLDVVIMH----PDRKS------HKG 401
+ L+++A LP+ ++ G +RR G DL P RK K
Sbjct: 267 AINVLVKEAVAVFLPDALVTMTGGFRRQGLLLYCDLIESTFEKFKLPSRKVDALDHFQKC 326
Query: 402 F--LSKYVKKL----------KEMKFLREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLN 449
F L Y +++ K K +R DL+ P D AF L+ WTG+
Sbjct: 327 FLILKLYHQRVGSDESSQQEGKGWKAIRVDLVMC-------PYDRRAFALLGWTGSRQFE 379
Query: 450 RRLRLLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHE 508
R LR A + LD+ L+ T R L+ D+E+E+F LG ++EP E
Sbjct: 380 RDLRRYATHERKMMLDNHALYDKT----------KRVFLEADSEEEIFAHLGLDYIEPWE 429
Query: 509 RN 510
RN
Sbjct: 430 RN 431
>gi|410975770|ref|XP_003994302.1| PREDICTED: DNA nucleotidylexotransferase [Felis catus]
Length = 543
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 94/357 (26%), Positives = 158/357 (44%), Gaps = 64/357 (17%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
+ N T+ F L Y + S ++ +A V++ LPF I S +G+P +G ++
Sbjct: 196 NFNHIFTDAFEVLAENYEFKENEISSATFMRAASVLKSLPFTIISMKDTEGIPCLGDKVK 255
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL +K++ +
Sbjct: 256 CVIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKIKSDKT 315
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 316 LKFTQMQKAGFLYYEDLVSCVTRAEAEAVGVLVKEAVWAFLPDAFVTMTGGFRRGKKIGH 375
Query: 386 DLDVVIMHPDR--KSHKGFLSKYVK---------------------KLKEMK------FL 416
D+D +I P + + L K + KL K F
Sbjct: 376 DVDFLITIPGSTDEEEEQLLPKVINLWQRKELLLYYDLVESTFEKLKLPSRKVDALDHFQ 435
Query: 417 REDLIFSTHSEEV----------------------YPRDIYAFGLIAWTGNDVLNRRLRL 454
+ LI H + V P + AF L+ WTG+ R LR
Sbjct: 436 KCFLILKLHHQRVDSGKCSQQEGKTWKAIRVDLVMCPYERRAFALLGWTGSRQFERDLRR 495
Query: 455 LA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
A + LD+ L+ T + LK ++E+E+F LG ++EP ERN
Sbjct: 496 YATHERKMILDNHALYDKT----------KKIFLKAESEEEIFAHLGLDYIEPWERN 542
>gi|296220892|ref|XP_002756529.1| PREDICTED: DNA nucleotidylexotransferase [Callithrix jacchus]
Length = 510
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 107/386 (27%), Positives = 170/386 (44%), Gaps = 84/386 (21%)
Query: 198 TDPSLLYNPP---------------DLNKNITEIFGKLINIYRALGEDRR----SFSYYK 238
T+P LL PP LN N +IF +I E R ++ +
Sbjct: 135 TNPGLLKTPPIAVQKISQYACQRRTTLN-NFNQIFTDAFDILAENCEFRENEDSCVTFMR 193
Query: 239 AIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFG 298
A V++ LPF I S +G+P +G ++ I+EI+ G+ S+++ DE+ ++ LF
Sbjct: 194 AASVLKSLPFTIISMKDTEGIPCLGSKVKGIIEEIIEDGESSEVKAVLNDERYQSFKLFT 253
Query: 299 EVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHS--QRLGLKYFDDIKTRIPRHEVEQMER 356
V+G+G T++K + G RTL +++E SLT + QR G Y++D+ + + R E E +
Sbjct: 254 SVFGVGLKTSEKWFRMGFRTLSKVRSEKSLTFTRMQRAGFLYYEDLVSCVTRAEAEAVSV 313
Query: 357 LLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP-DRKSHKGFLSKYVKKLKEMK- 414
L+++A LP+ I G +RRGK D+D +I P + + L + V L E K
Sbjct: 314 LVKEAVWAFLPDAFITMTGGFRRGKKMGHDVDFLITSPGSTEDEEQQLLQKVMNLWEKKG 373
Query: 415 -FLREDLIFST---------------HSEEVY---------------------------- 430
L DL+ ST H ++ +
Sbjct: 374 LLLYYDLVESTFEKLRLPSRKVDALDHFQKCFLIFKLPRQRLDSDQPSWQEGKTWKAIRV 433
Query: 431 -----PRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQGVRAR 484
P + AF L+ WTG+ R LR A + LD+ L+ T R
Sbjct: 434 DLVMCPYERRAFALLGWTGSRQFERDLRRYATHERKMILDNHALYDKT----------KR 483
Query: 485 TSLKFDTEKEVFDFLGFPWLEPHERN 510
LK ++E+E+F LG ++EP ERN
Sbjct: 484 IFLKAESEEEIFTHLGLDYIEPWERN 509
>gi|41053810|ref|NP_956542.1| DNA polymerase mu [Danio rerio]
gi|29126850|gb|AAH47832.1| Polymerase (DNA directed), mu [Danio rerio]
gi|182891836|gb|AAI65363.1| Polm protein [Danio rerio]
Length = 507
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 88/336 (26%), Positives = 148/336 (44%), Gaps = 67/336 (19%)
Query: 232 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
RS ++ +A V++ LP +++S + ++ LP +G Q I+EI+ G ++E + E+
Sbjct: 181 RSVAFRRAASVLKALPHRVKSMEDLRCLPCLGDHSQRVIKEILEDGSSREVESTRQSEQF 240
Query: 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHE 350
+ + V+G+G TA + +G RT DDL + L +Q+ G++Y+ +++ + R E
Sbjct: 241 QAMKALTGVFGVGVRTADRWIREGLRTPDDLIRTGQQLNRAQQAGVQYYSELQRAVTRAE 300
Query: 351 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 410
E + +++ A VLP I G +RRGK D+D +I HP+ +G +SK + L
Sbjct: 301 AELIMAIVEAAVNSVLPGCQIQLMGGFRRGKEVGHDVDFLITHPEEGKEEGLMSKIISWL 360
Query: 411 KEM----------------------------KFLREDLIFSTHSEE-------------- 428
+E +F R IF HS
Sbjct: 361 EEQGVLLYQKTTRNSYVERLDGPARSASNMDRFERCFSIFKLHSSASRSGSASTSESGSA 420
Query: 429 -------------VYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYG 474
V P +AF + WTG+ + R LR A + K L L+ +
Sbjct: 421 CDSGCRAVRVDLVVSPFSQFAFATLGWTGSKLFERELRRWAGQEKQMTLSSHTLYDS--- 477
Query: 475 SGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
KQ + L+ TE+E+F LG ++ P ERN
Sbjct: 478 ---KQNL----YLRAQTEEEIFAHLGLEFIPPSERN 506
>gi|402081123|gb|EJT76268.1| DNA polymerase beta [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 599
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 105/423 (24%), Positives = 168/423 (39%), Gaps = 73/423 (17%)
Query: 154 QAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDF--SSHHITDPSLLYNPPDLNK 211
Q +K T+ S+ P+ S S PDF + + P+ ++ P N+
Sbjct: 180 QPTAKTSTATHRSSQVPSLLRQSTSEHEAARHMPTMPDFLRTVYSCQRPTPIHPP---NE 236
Query: 212 NITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHI 270
K I R L DR +Y A+ + P+ + S ++V LP G
Sbjct: 237 AFINQLAK-IKTTRLLAGDRIGVRAYSSAMASLAAYPYVLASPEEVDRLPNCGPKFAVLF 295
Query: 271 QEIVTTGK-LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL--KNEDS 327
QE G + + + E D K+ I F +VWG+G TA+K Y+ G R LDD+ ++
Sbjct: 296 QEFQRQGGVIREAQEAELDPKLSVIKNFYDVWGVGDVTAKKWYDNGWRDLDDVVEYGWET 355
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 387
LT Q++G+K++D+ +IPR EVE++ + + + ++ G YRRG GD+
Sbjct: 356 LTRDQQIGVKFYDEFLLKIPRDEVEKIADTILEHANRLRNGFQMVIVGGYRRGNKESGDV 415
Query: 388 DVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE------------------- 428
D+++ HPD + + ++ V L+ ++ L+ ST + E
Sbjct: 416 DIMLSHPDENATRNLVTHLVVALEGSNYITHTLVLSTKNSERGQVTLSWKGEVNKVPGSG 475
Query: 429 ---------VYPRDIYAFG---------------------------LIAWTGNDVLNRRL 452
V+ +A G L+ WT R L
Sbjct: 476 YCTLDKALVVWQDPSWAAGGNNTEKNPNPHRRVDIVVTPWKTAGCALLGWTSGTTFQRDL 535
Query: 453 R-LLAESKGYRLDDTGLFPATYG-----SGGKQGVRARTSLKFDTEKEVFDFLGFPWLEP 506
R +G + D +G+ T G G+ G A L EK VF L WL P
Sbjct: 536 RNYCKRERGLKFDSSGIRSRTSGRWLDLESGEDGSPAPDMLT--AEKRVFAGLELEWLSP 593
Query: 507 HER 509
ER
Sbjct: 594 EER 596
>gi|441432439|ref|YP_007354481.1| DNA polymerase family X [Acanthamoeba polyphaga moumouvirus]
gi|440383519|gb|AGC02045.1| DNA polymerase family X [Acanthamoeba polyphaga moumouvirus]
Length = 357
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 86/305 (28%), Positives = 156/305 (51%), Gaps = 44/305 (14%)
Query: 242 VIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF---EKDEKVRTISLFG 298
++++L F+I + G+ GIG S + I EI+ TGKLS+L++ +K ++ +I
Sbjct: 48 ILKRLDFEITDPSDLDGIRGIGTSTKRRIAEILETGKLSELKNKYDKKKQSQINSIQELE 107
Query: 299 EVWGIGPATAQKLYEK-GHRTLDDLK-----NEDSLTHSQRLGLKYFDDIKTRIPRHEVE 352
+V GIG +TA+KL K G R++D+LK N+ +++++ LGLKY+ ++ IPR E+
Sbjct: 108 KVIGIGSSTAKKLITKHGIRSVDELKKAIKLNKITVSNAILLGLKYYGVVEGNIPRKEIT 167
Query: 353 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSK------- 405
Q+E+ L +++ ++ ++ GSYRRGK + GD+DV++ H K+ K L+
Sbjct: 168 QIEKYLVSQAKDINEDLELIICGSYRRGKPTSGDIDVLMYHRAMKTTKEILNHEKYNLEP 227
Query: 406 ----YVKKLKEMKFLREDLI---------FSTHSE--------EVYPRDIYAFGLIAWTG 444
Y+ +L FL + + F + P ++ +TG
Sbjct: 228 YFEMYIGQLTNNGFLLDHMTDAATKKYMGFCKYKSYPVRRIDIRFVPYQSLPSAMLYFTG 287
Query: 445 NDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWL 504
LN +R A+ + L++ GL+ + G++ +K +E ++F+ LG +L
Sbjct: 288 PYELNTIMRSAAKKRKMILNEYGLYKV-----DENGLK--IPVKIKSEADIFNALGMDYL 340
Query: 505 EPHER 509
P ER
Sbjct: 341 TPEER 345
>gi|355782991|gb|EHH64912.1| hypothetical protein EGM_18244 [Macaca fascicularis]
Length = 510
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 97/357 (27%), Positives = 162/357 (45%), Gaps = 68/357 (19%)
Query: 212 NITEIFGKLINIYRALGEDRR----SFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N +IF +I E R ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NCNQIFTDAFDILAENCEFRENEDSCVTFMRAASVLKSLPFTIISMKDTEGIPCLGSKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL +++++S
Sbjct: 223 CIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSDES 282
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T QR G Y++D+ + + R E E + L+++A + LP+ + G +RRGK
Sbjct: 283 LKFTRMQRAGFLYYEDLVSCVTRAEAEAVSVLVKEAVQAFLPDAFVTMTGGFRRGKKMGH 342
Query: 386 DLDVVIMHP-DRKSHKGFLSKYVKKLKEMK--FLREDLIFST---------------HSE 427
D+D +I P + + L + V L E K L DL+ ST H +
Sbjct: 343 DVDFLITSPGSTEDEEQQLLQKVMNLWEKKGLLLYYDLVESTFEKLRLPSRKVDALDHFQ 402
Query: 428 EVY---------------------------------PRDIYAFGLIAWTGNDVLNRRLRL 454
+ + P + AF L+ WTG+ R LR
Sbjct: 403 KCFLIFKLPLQRVDSDQSSWQEGKTWKAIRVDLVMCPYERRAFALLGWTGSRQFERDLRR 462
Query: 455 LA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
A + LD+ L+ T R LK ++E+E+F LG ++EP ERN
Sbjct: 463 YATHERKMILDNHALYDKT----------KRIFLKAESEEEIFAHLGLDYIEPWERN 509
>gi|388454490|ref|NP_001253623.1| DNA nucleotidylexotransferase [Macaca mulatta]
gi|355562663|gb|EHH19257.1| hypothetical protein EGK_19933 [Macaca mulatta]
gi|383416293|gb|AFH31360.1| DNA nucleotidylexotransferase isoform 1 [Macaca mulatta]
Length = 510
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 97/357 (27%), Positives = 162/357 (45%), Gaps = 68/357 (19%)
Query: 212 NITEIFGKLINIYRALGEDRR----SFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N +IF +I E R ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NCNQIFTDAFDILAENCEFRENEDSCVTFMRAASVLKSLPFTIISMKDTEGIPCLGSKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL +++++S
Sbjct: 223 CIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSDES 282
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T QR G Y++D+ + + R E E + L+++A + LP+ + G +RRGK
Sbjct: 283 LKFTRMQRAGFLYYEDLVSCVTRAEAEAVSVLVKEAVQAFLPDAFVTMTGGFRRGKKMGH 342
Query: 386 DLDVVIMHP-DRKSHKGFLSKYVKKLKEMK--FLREDLIFST---------------HSE 427
D+D +I P + + L + V L E K L DL+ ST H +
Sbjct: 343 DVDFLITSPGSTEDEEQQLLQKVMNLWEKKGLLLYYDLVESTFEKLRLPSRKVDALDHFQ 402
Query: 428 EVY---------------------------------PRDIYAFGLIAWTGNDVLNRRLRL 454
+ + P + AF L+ WTG+ R LR
Sbjct: 403 KCFLIFKLPLQRVDSDQSSWQEGKTWKAIRVDLVMCPYERRAFALLGWTGSRQFERDLRR 462
Query: 455 LA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
A + LD+ L+ T R LK ++E+E+F LG ++EP ERN
Sbjct: 463 YATHERKMILDNHALYDKT----------KRIFLKAESEEEIFAHLGLDYIEPWERN 509
>gi|452984299|gb|EME84056.1| hypothetical protein MYCFIDRAFT_162909 [Pseudocercospora fijiensis
CIRAD86]
Length = 516
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 88/348 (25%), Positives = 146/348 (41%), Gaps = 74/348 (21%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
+Y +I I K +A ++ LPG + + E TG + +E DE ++ +
Sbjct: 167 AYSTSIAAIAAYTHKFSTAKEILALPGCDSKIANLWVEWKNTGTIKAVEDARNDEDLKVL 226
Query: 295 SLFGEVWGIGPATAQKLY-EKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEV 351
LF +WG+G ATA+ Y ++G R LDD+ +L Q++G+KY+D+ + IPR EV
Sbjct: 227 RLFYNIWGVGVATARDFYFDRGWRELDDIVEYGWSTLVRVQQIGVKYYDEFQDLIPRAEV 286
Query: 352 EQMERLLQKAGEEVLPEVI--ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKK 409
EQ+ +++K +V + I ++ GG YRRGK + GD+D+V+ HP+ ++ V
Sbjct: 287 EQICEVIRKHAVKVRDDGIQTVIVGG-YRRGKEASGDVDIVVTHPNESCTLNLVNDVVGS 345
Query: 410 LKEMKFLREDLIFSTHSEE------------------------------VYPRDIYAFGL 439
L+E +++ L S S E V+P
Sbjct: 346 LEEEEWITHTLTVSNASSERDQQTLPFRAGGGGHGFDTLDKALVVWQNPVWPSKAQDLAE 405
Query: 440 IAWTGNDVLNRRL----------------------------RLLAESKGYRLDDTGL--- 468
A N ++RR+ R KG++ D +G+
Sbjct: 406 NAQAKNPNIHRRVDIIISPWRTVGCAVVGWSGGTTFERDLRRYAKNVKGWKFDSSGVRNR 465
Query: 469 -------FPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ GK+G R + E+ VF+ LG + EP ER
Sbjct: 466 GNGEVVDLEGYFSWEGKEGKEGRAKTIEEAERRVFEGLGLRYREPWER 513
>gi|409044114|gb|EKM53596.1| hypothetical protein PHACADRAFT_176005 [Phanerochaete carnosa
HHB-10118-sp]
Length = 564
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 101/366 (27%), Positives = 147/366 (40%), Gaps = 114/366 (31%)
Query: 220 LINIYRAL-GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGK 278
+I RAL GE+R + SY +AI I+ P +I S QV+ L +G
Sbjct: 235 IIKRSRALEGEERSALSYSRAISAIKAYPRRITSIRQVEELSHVGT-------------- 280
Query: 279 LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL--------KNEDS--- 327
E+ + +SLF ++GIGP+TA++LY G RT+DDL + E+S
Sbjct: 281 ------IANSERFKALSLFSSIYGIGPSTARRLYALGLRTVDDLEVYFGVEPEEEESQLV 334
Query: 328 -LTHSQRLG---------------LKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII 371
L H +R G L +D + IPR EVE+M R++ V +
Sbjct: 335 ELEHHERFGRASESGLGETWIKIALGLRNDFELMIPRAEVEEMGRVVMDELNIVEHGCVS 394
Query: 372 LCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFL--------------- 416
G YRRGK D+D+V HPD KG ++V L + +
Sbjct: 395 TIVGGYRRGKPQSNDVDIVFTHPDPTKSKGLCKRFVHHLHKKGMVTHVMHLSGFHGHNPL 454
Query: 417 -----------------------------REDLIFSTHSEEVYPRDIYAFGLIAWTGNDV 447
R DLIF+ ++Y +I W+G+ +
Sbjct: 455 RTTHWDSLEKALTVFILPPSSPFYKGTRRRMDLIFAQP-------EVYWCAVIGWSGSIM 507
Query: 448 LNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKF--DTEKEVFDFLGFPWL 504
R +R A + KG + D +G+ R S F TEKEVFD G W+
Sbjct: 508 FQRDIRQWAKDKKGMKFDSSGI------------TRRYDSKPFYPKTEKEVFDLFGLEWV 555
Query: 505 EPHERN 510
+P RN
Sbjct: 556 DPVWRN 561
>gi|185132129|ref|NP_001118178.1| DNA nucleotidylexotransferase [Oncorhynchus mykiss]
gi|6094445|sp|Q92089.1|TDT_ONCMY RecName: Full=DNA nucleotidylexotransferase; AltName: Full=Terminal
addition enzyme; AltName: Full=Terminal
deoxynucleotidyltransferase; Short=Terminal transferase
gi|1354475|gb|AAB01980.1| terminal deoxynucleotidyl transferase [Oncorhynchus mykiss]
Length = 501
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 102/408 (25%), Positives = 174/408 (42%), Gaps = 72/408 (17%)
Query: 163 TNALSEA-PNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLI 221
T+++ E P + S+ NT + SP + +++ + N N +IF ++
Sbjct: 105 TDSMREGRPVRVETRHSIQNTPTGTDCSPPTAVANVSQYACQRRTTTENHN-NKIFTDVM 163
Query: 222 NIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTG 277
E S ++ +A V++ LP + ++GLP +G+ + ++EI+T G
Sbjct: 164 EELAESSEFNESKGPCLAFRQAASVLKSLPSAVHCLKAIQGLPCLGEHTKAVMEEILTFG 223
Query: 278 KLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS--LTHSQRLG 335
+ K+E DE+ + + LF V+G+GP TA+K Y +G R+L ++ E + L QR G
Sbjct: 224 RSFKVEEIRCDERYQALKLFTSVFGVGPKTAEKWYRRGLRSLQEILTEPNIQLNRMQRAG 283
Query: 336 LKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP- 394
Y+ DI + + E + + +++ + P+ I+ G +RRGK D+D ++ P
Sbjct: 284 FLYYSDISKAVSKAEAKAVGCIIEDTFHWIAPDAILALTGGFRRGKEYGHDVDFLLTMPE 343
Query: 395 ------------DRKSHKGFL--SKY------VKKLKEMKFLRED------LIFSTHSEE 428
DR +G L Y V KL +F D LI +
Sbjct: 344 IGKDEGLLLHVIDRLKDQGILLYCDYQGSTFDVSKLPSCRFEDMDCFQKCFLILRLEQGQ 403
Query: 429 VY-------------------------PRDIYAFGLIAWTGNDVLNRRLRLLAE-SKGYR 462
V P D YAF L+ WTG+ R LR A+ +
Sbjct: 404 VEGERGLQRDPGDSRGWRAVRVDLVAPPVDRYAFALLGWTGSR-FGRDLRTFAQKERQML 462
Query: 463 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
LD+ L+ T + L TE+++F LG ++EP +RN
Sbjct: 463 LDNHALYDKT----------KKLCLLATTEEDIFTHLGLEYVEPWQRN 500
>gi|322709493|gb|EFZ01069.1| terminal deoxynucleotidyl transferase, putative [Metarhizium
anisopliae ARSEF 23]
Length = 604
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 98/388 (25%), Positives = 163/388 (42%), Gaps = 75/388 (19%)
Query: 190 PDF--SSHHITDPSLLYNPPDLNKNITEIFGKLINIYRAL-GEDRRSFSYYKAIPVIEKL 246
P+F +++ P+ L+ PP+ K I E+ K I R L G +Y +I +
Sbjct: 221 PEFLHTTYSCQRPTPLH-PPN-EKFILEL--KKIRTLRLLQGNQIGVRAYSTSIAALSAY 276
Query: 247 PFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPA 306
P I++ ++ LPG + + QE + G+ + D K+ T+ LF ++WG+G
Sbjct: 277 PHVIQN---IERLPGCSTKIAELYQEWLKDGETKETAAAASDAKMSTLMLFYDIWGVGDT 333
Query: 307 TAQKLYEKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEE 364
TA++ Y KG + LDDL SLT Q++G+K++D+ + IPR EVE++ L+ + +
Sbjct: 334 TAREFYNKGWKDLDDLVEYGWSSLTRVQQIGVKFYDEFQQMIPRQEVEEIASLVLQHARK 393
Query: 365 VLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFST 424
+ + G YRRGK GD+DV++ H D ++ V L++ + L T
Sbjct: 394 IEAGFQMAIVGGYRRGKKESGDVDVILSHRDESQTMNMINDLVVSLEQAHLITHTLSLWT 453
Query: 425 HSEE-----------------------------------------------VYPRDIYAF 437
+ E + P
Sbjct: 454 KNSERGQLPLAWRGEGARRGSGFDTLDKAMVVWQDKKKAGDDAPHRRVDIIISPWKTVGC 513
Query: 438 GLIAWTGNDVLNRRL-RLLAESKGYRLDDTGL----------FPATYGSG----GKQGVR 482
L+ W+G R L R + KG + D +G+ F + Y + G G
Sbjct: 514 ALLGWSGGTTFERDLRRYCKQEKGLKFDSSGIRRRSDGTWVDFESHYTASDEGPGHDGRC 573
Query: 483 ARTSLKFDT-EKEVFDFLGFPWLEPHER 509
+ + DT E+ VF+ LG W +P ER
Sbjct: 574 PQLAPDMDTAERRVFEGLGLTWRDPTER 601
>gi|402881070|ref|XP_003904103.1| PREDICTED: DNA nucleotidylexotransferase [Papio anubis]
Length = 510
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 97/357 (27%), Positives = 161/357 (45%), Gaps = 68/357 (19%)
Query: 212 NITEIFGKLINIYRALGEDRR----SFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N +IF +I E R ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NCNQIFTDAFDILAENCEFRENEDSCVTFMRAASVLKSLPFTIISMKDTEGIPCLGSKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL +++++S
Sbjct: 223 CIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSDES 282
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T QR G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 283 LKFTRMQRAGFLYYEDLVSCVTRAEAEAVSVLVKEAVRAFLPDAFVTMTGGFRRGKKMGH 342
Query: 386 DLDVVIMHP-DRKSHKGFLSKYVKKLKEMK--FLREDLIFST---------------HSE 427
D+D +I P + + L + V L E K L DL+ ST H +
Sbjct: 343 DVDFLITSPGSTEDEEQQLLQKVMNLWEKKGLLLYYDLVESTFEKLRLPSRKVDALDHFQ 402
Query: 428 EVY---------------------------------PRDIYAFGLIAWTGNDVLNRRLRL 454
+ + P + AF L+ WTG+ R LR
Sbjct: 403 KCFLIFKLPLQRVDSHQSSWQEGKTWKAIRVDLVMCPYERRAFALLGWTGSRQFERDLRR 462
Query: 455 LA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
A + LD+ L+ T R LK ++E+E+F LG ++EP ERN
Sbjct: 463 YATHERKMILDNHALYDKT----------KRIFLKAESEEEIFAHLGLDYIEPWERN 509
>gi|353236694|emb|CCA68683.1| related to DNA polymerase Tdt-N [Piriformospora indica DSM 11827]
Length = 531
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 104/426 (24%), Positives = 173/426 (40%), Gaps = 96/426 (22%)
Query: 161 VETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLL------YNPPDLNKNIT 214
V + L + P S S L T ++ + S D + L P + KN +
Sbjct: 125 VAVDGLVPPASVPKPSRSPKKGLGTKNSPIELSDSESFDAAALPRYCCQRQTPLVCKN-S 183
Query: 215 EIFGKLINIYRAL---GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQ 271
E+ +L I + G+D ++ ++ +AI I+ P KIE+ ++++ LP +GKS + +
Sbjct: 184 ELIAQLAMIRQNRWLEGDDMKALAHSRAIASIKAFPNKIETIEEIEKLPYVGKSTLNRVS 243
Query: 272 EIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-------- 323
E + G + + H EK+E+ + +S F V+GIGP A+ + +T DL+
Sbjct: 244 EFLGRGFIEEARHLEKNERFQVLSDFTTVYGIGPVKARAFLHQNIKTFGDLERYYRRQLM 303
Query: 324 -NEDSLTHSQRLG-LKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGK 381
+D+ L L +D + +I R EVE++ R++ E + P I G YRRGK
Sbjct: 304 SGKDTENAQGMLNSLAAREDFRVKISRAEVEEVARIIANELEIIQPGFIHTITGGYRRGK 363
Query: 382 ASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEM---------------------------- 413
D+D+V H + +G L V +LK
Sbjct: 364 EESNDIDIVFSHKEIGHGRGALQSLVSRLKAQGIITHTLPATSFRTPGSMKAYTKEKALE 423
Query: 414 ------------------------KFLREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLN 449
K R DLIF+ P + Y ++ WTG+ +
Sbjct: 424 RALCVIKLPDDSPSFPYNVSGQPRKLRRLDLIFA-------PLETYWCAVVGWTGSIMFE 476
Query: 450 RRLRLLAESK-GYRLDDTGLFPATYGSGGKQGVRARTSLK---FDTEKEVFDFLGFPWLE 505
R LR + K Y+ D +GL R+ L+ +E+ +F LG ++
Sbjct: 477 RDLRSWCKDKLQYKFDSSGLI-------------RRSDLQCIPVHSERHLFQLLGLSYVP 523
Query: 506 PHERNL 511
PH RN
Sbjct: 524 PHLRNC 529
>gi|139001490|dbj|BAF51677.1| deoxynucleotidyltransferase, terminal [Microcebus murinus]
Length = 511
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 97/358 (27%), Positives = 161/358 (44%), Gaps = 65/358 (18%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
+ N T+ F L Y + + ++ +A V++ LPF I + +G+P +G +
Sbjct: 163 NCNHIFTDAFEILAENYEFRENEGCAVTFLRAASVLKSLPFTIITMRDTEGIPCLGDKAK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++++ S
Sbjct: 223 GIIEEIIEDGESSEVKAVLNDERYKSFKLFTSVFGVGLKTSEKWFRMGFRTLSKIRSDKS 282
Query: 328 LTHS--QRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
LT + QR G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 283 LTFTRMQRAGFHYYEDLVSHVTRAEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKMGH 342
Query: 386 DLDVVIMHPDRKSH---------------KGFL-------SKYVK-KLKEMK------FL 416
D+D +I P KG L S + K KL K F
Sbjct: 343 DVDFLITSPGSTEEEEQQLLHKVMNLWEKKGLLLYCDLVESTFEKFKLPSRKVDALDHFQ 402
Query: 417 REDLIFSTHSEEV-----------------------YPRDIYAFGLIAWTGNDVLNRRLR 453
+ LI H + V P + +A+ L+ WTG+ R LR
Sbjct: 403 KCFLILKLHHQRVVDSEKSSQQEEKTWKAIRVDLVMCPYECHAYALLGWTGSRQFERDLR 462
Query: 454 LLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
A + LD+ GL+ T R LK ++E+E+F LG ++EP ERN
Sbjct: 463 RYATHERRMMLDNHGLWDKT----------KRIFLKAESEEEIFAHLGLDYIEPWERN 510
>gi|320589082|gb|EFX01550.1| hypothetical protein CMQ_6492 [Grosmannia clavigera kw1407]
Length = 686
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 123/244 (50%), Gaps = 11/244 (4%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 264
+PP N+ + K+ I +G++ +Y AI + P + SA +V LPG G
Sbjct: 283 HPP--NEKFIDSLKKIQRIRELMGDEIGVRAYSTAIASLAAYPHVLSSAAEVSRLPGCGP 340
Query: 265 SMQDHIQEI-VTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 323
+ + +E T G + + + E D K+ + LF ++WG+ ATA+ + +G R LDD+
Sbjct: 341 KIAELYREYSATGGHVQEADDAESDPKICVLRLFCDIWGVAEATARSFHNRGWRDLDDVV 400
Query: 324 --NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGK 381
L Q++G+KY+D+++ + R +V+ + + + ++ P ++ G YRRGK
Sbjct: 401 EFGWSELGRVQQIGVKYYDELQMTMTRAQVKDIANTVLEQANQIFPGFQMVIAGGYRRGK 460
Query: 382 ASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEVYPRDIYAFGLIA 441
GD+DV++ HPD ++ + + V L+ + + L ST + E A ++
Sbjct: 461 KMNGDVDVILSHPDEEATHLVIGRLVLALERIGRITHTLTLSTANSE------RAQVPVS 514
Query: 442 WTGN 445
W GN
Sbjct: 515 WKGN 518
>gi|45382381|ref|NP_990720.1| DNA nucleotidylexotransferase [Gallus gallus]
gi|549065|sp|P36195.1|TDT_CHICK RecName: Full=DNA nucleotidylexotransferase; AltName: Full=Terminal
addition enzyme; AltName: Full=Terminal
deoxynucleotidyltransferase; Short=Terminal transferase
gi|460163|gb|AAA75280.1| terminal deoxynucleotidyl transferase [Gallus gallus]
Length = 506
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/360 (25%), Positives = 162/360 (45%), Gaps = 74/360 (20%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
+ NK T+ F + Y + + +A V++ LPF + ++GLP +G ++
Sbjct: 163 NCNKKFTDAFEIMAENYEFKENEIFCLEFLRAASVLKSLPFPVTRMKDIQGLPCMGDRVR 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
D I+EI+ G+ S+ + DE+ ++ F V+G+G T++K + G RT++++K + +
Sbjct: 223 DVIEEIIEEGESSRAKDVLNDERYKSFKEFTSVFGVGVKTSEKWFRMGLRTVEEVKADKT 282
Query: 328 LTHS--QRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L S QR G Y++D+ + + + E + + +++ LP+ ++ G +RRGK
Sbjct: 283 LKLSKMQRAGFLYYEDLVSCVSKAEADAVSSIVKNTVCTFLPDALVTITGGFRRGKKIGH 342
Query: 386 DLDVVIMHPDRKS-----HKGFL-------SKYVK------------------------- 408
D+D +I P ++ HKG L S +VK
Sbjct: 343 DIDFLITSPGQREDDELLHKGLLLYCDIIESTFVKEQIPSRHVDAMDHFQKCFAILKLYQ 402
Query: 409 -----------------KLKEMKFLREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRR 451
++K+ K +R DL+ + P + YA+ L+ WTG+ R
Sbjct: 403 PRVDNSSYNMSKKCDMAEVKDWKAIRVDLVIT-------PFEQYAYALLGWTGSRQFGRD 455
Query: 452 LRLLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
LR A + LD+ L+ R R LK +E+E+F LG ++EP ERN
Sbjct: 456 LRRYATHERKMMLDNHALYDK----------RKRVFLKAGSEEEIFAHLGLDYVEPWERN 505
>gi|453085134|gb|EMF13177.1| Nucleotidyltransferase [Mycosphaerella populorum SO2202]
Length = 730
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 97/403 (24%), Positives = 165/403 (40%), Gaps = 77/403 (19%)
Query: 182 TLSTASASPDFSSHHITDPSLLYNPPD-LNKNITEIFGKLINIYRALGEDRRSF-SYYKA 239
T S P++ H+ P D N ++ G+ I R L D +Y +
Sbjct: 327 TSSDIPEPPEWVKAHVKYACQRSTPKDNPNDVFIDLLGR-IKFARLLTNDEIGVRAYATS 385
Query: 240 IPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGE 299
I + ++I + ++ +PG + + E GK+ +E EKDE ++ + LF
Sbjct: 386 IAALRSHSYEISNPQEILRIPGCDAKIANLWVEWKNNGKIKAVEEAEKDEDLKILKLFWN 445
Query: 300 VWGIGPATAQKL-YEKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMER 356
+WG+G TA++ Y++G R LDD+ +L Q++G+KY+D+ IPR EVE + +
Sbjct: 446 IWGVGVTTAREFYYDRGWRELDDIVEYGWSTLQRVQQIGVKYYDEFLDPIPRAEVESICK 505
Query: 357 LLQKAGEEVLPEVI--ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMK 414
++ + +V + I ++ GG YRRGK +CGD+D+VI HPD + + V L+
Sbjct: 506 VVHQHAVKVRDDGIQSMIVGG-YRRGKEACGDVDIVISHPDEAATHNVVEDIVASLENEG 564
Query: 415 FLREDLIFST------------------HSEEVYPRDIYAFGLIAWTGND---------- 446
++ L S H + + + F +W D
Sbjct: 565 WITHTLTLSINNSKRGQQTLPFRGDGGGHGFDTLDKALVVFQDPSWPSKDEDLAMNPKAK 624
Query: 447 -----------------------------VLNRRLRLLAES-KGYRLDDTGLFPATYGS- 475
R LR A++ KG++ D +G+ G
Sbjct: 625 NPNIHRRVDIIIAPWRTVGCAVVGWSGGTTFERDLRRYAKNVKGWKFDSSGVRDVGNGQF 684
Query: 476 ---------GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
G K+GV R + E+ VF+ G + +P ER
Sbjct: 685 LDLEGYFQYGDKEGVEGRAMTMEEAERRVFEGFGLEYRKPDER 727
>gi|154332625|ref|XP_001562129.1| mitochondrial DNA polymerase beta [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134059577|emb|CAM37159.1| mitochondrial DNA polymerase beta [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 376
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 105/367 (28%), Positives = 167/367 (45%), Gaps = 65/367 (17%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIE-KLPFKIESADQVKGLPGIGKSM 266
D +NI IF ++ ++ ALGE + SY+++I ++ L + + +K GIG +
Sbjct: 10 DHRENIIRIFQEMADLNNALGEKYKVSSYHRSIESLKTNLDKPLNTPQDLKAFSGIGAKL 69
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNE 325
+EI+ TGKL +LE K K++ I +V G GP A L+++ G T+D+L +
Sbjct: 70 LKKAEEIMATGKLEELESKTKP-KLKAIQELTQVHGFGPRAAAALFDREGIFTVDELLQK 128
Query: 326 ----DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVL-PEVIILCGGSYRRG 380
SLT QR+G+KYF DI +IP E E L++ EVL + IL GSYRR
Sbjct: 129 ADSISSLTDQQRVGIKYFYDINEKIPMQESVLHENYLREKCMEVLGKDFSILICGSYRRR 188
Query: 381 KASCGDLDVVIMHP-------DRKSHKGFLSKYVKKLKEMKFLREDLI------------ 421
GD+D ++ + + G L+ +V+ L+ +K+L +
Sbjct: 189 HPFSGDVDAILSRTLDAPPLNEPVAATGVLAHFVEFLESIKYLEATMAQGPLKYMGMGRL 248
Query: 422 --------FSTHSEEVYPR---DIYAF-------GLIAWTGNDVLNRRLRLLAESKGYRL 463
+ +VY DI ++ +TG+ N +R A SKGY L
Sbjct: 249 PPRIVRDKVGRENTKVYKARRVDIRLIETKSVPTAMLTFTGSKNFNVIMRQAAISKGYLL 308
Query: 464 DDTGLFP--------ATYGSGGKQGVRARTSL------------KFDTEKEVFDFLGFPW 503
++ GLF A Y G +G A L + +E++VFD LG P+
Sbjct: 309 NEYGLFKLGTPEEARALYERIGIRGKNAGEELGVPKDELEDKRVEVRSEQDVFDVLGMPY 368
Query: 504 LEPHERN 510
+P R+
Sbjct: 369 AKPENRD 375
>gi|57231410|gb|AAW47418.1| DNA polymerase mu [Danio rerio]
Length = 507
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 87/336 (25%), Positives = 147/336 (43%), Gaps = 67/336 (19%)
Query: 232 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
RS ++ +A V++ LP +++S + ++ LP +G Q I+EI+ G ++E + E+
Sbjct: 181 RSVAFRRAASVLKALPHRVKSMEDLRCLPCLGDHSQRVIKEILEDGSSREVESTRQSEQF 240
Query: 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHE 350
+ + V+G+G TA + +G RT DDL + L +Q+ G++Y+ +++ + R E
Sbjct: 241 QAMKALTGVFGVGVRTADRWIREGLRTPDDLIRTGQQLNRAQQAGVQYYSELQRAVTRAE 300
Query: 351 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 410
E + +++ A VLP I G +RRGK D+D +I HP+ +G + K + L
Sbjct: 301 AELIMAIVEAAVNSVLPGCQIQLMGGFRRGKEVGHDVDFLITHPEEGKEEGLMLKIISWL 360
Query: 411 KEM----------------------------KFLREDLIFSTHSEE-------------- 428
+E +F R IF HS
Sbjct: 361 EEQGVLLYQKTTRNSYVERLDGPARSASNMDRFERCFSIFKLHSSASRSGSASTSESGSA 420
Query: 429 -------------VYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYG 474
V P +AF + WTG+ + R LR A + K L L+ +
Sbjct: 421 CDSGCRAVRVDLVVSPFSQFAFATLGWTGSKLFERELRRWAGQEKQMTLSSHTLYDS--- 477
Query: 475 SGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
KQ + L+ TE+E+F LG ++ P ERN
Sbjct: 478 ---KQNL----YLRAQTEEEIFAHLGLEFIPPSERN 506
>gi|348588114|ref|XP_003479812.1| PREDICTED: LOW QUALITY PROTEIN: DNA nucleotidylexotransferase-like
[Cavia porcellus]
Length = 510
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 153/330 (46%), Gaps = 64/330 (19%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
+Y +A V++ LPF I S +G+P +G ++ I+EI+ G+ S++ DE+ ++
Sbjct: 190 TYIRAASVLKSLPFTIISMKDTEGIPCLGDRVKCIIEEIIEDGESSEVNAVLNDERYKSF 249
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL--THSQRLGLKYFDDIKTRIPRHEVE 352
LF V+G+G T++K + G R+L+ +K++ SL T Q+ G Y++D+ + + R E E
Sbjct: 250 KLFTSVFGVGLKTSEKWFRMGFRSLNKIKSDKSLKFTRMQKAGFLYYEDLVSCVTRAEAE 309
Query: 353 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRK--------------- 397
+ L+++A LP I G +RRGK D+D +I P+
Sbjct: 310 AVSTLVKEAVWAFLPGAFISMTGGFRRGKEIGHDVDFLITSPEITEDEEQQVLHKVINLW 369
Query: 398 SHKGFL----------------SKYVKKLKEMK--FL-------REDLIFSTHSEE---- 428
+KG L S+ V L + FL RED S+ EE
Sbjct: 370 ENKGLLLYSDLVESTFEKLKLPSRKVDALDHFQKCFLILKLHHQREDNEKSSQQEEKTWK 429
Query: 429 -------VYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQG 480
+ P + AF L+ WTG+ R LR A + LD+ L+ T
Sbjct: 430 AIRVDLVMCPYERRAFALLGWTGSRQFERDLRRYATHERKMMLDNHALYDKT-------- 481
Query: 481 VRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
R LK ++E+E+F LG ++EP ERN
Sbjct: 482 --KRIFLKAESEEEIFAHLGLDYIEPWERN 509
>gi|452843899|gb|EME45834.1| hypothetical protein DOTSEDRAFT_71509 [Dothistroma septosporum
NZE10]
Length = 718
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 111/196 (56%), Gaps = 4/196 (2%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
+Y I + P+KI ++ LPG + + + E +G + +E DE ++ +
Sbjct: 369 AYSTFIASLRAYPYKISHPKELLRLPGCEQKLANLWVEWKNSGTIKAVEELRADEDLKHL 428
Query: 295 SLFGEVWGIGPATAQKLY-EKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEV 351
LF ++WG+G TA++ Y EKG R LDD+ +L+ Q++G+K++D+ + IPR EV
Sbjct: 429 RLFYDIWGVGATTAREFYFEKGWRELDDIIEYGWKTLSRVQQIGVKFYDEFQDLIPRAEV 488
Query: 352 EQMERLLQKAGEEVLPEVI-ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 410
E + ++++ +V + I I+ G YRRGK + GD+DV++ HP+ + ++K V L
Sbjct: 489 ESICEVIRQHAVKVCDDGIKIMIVGGYRRGKEASGDVDVIVSHPEHDKTQNLVNKIVDSL 548
Query: 411 KEMKFLREDLIFSTHS 426
+E +++ L S ++
Sbjct: 549 EEAEYITHVLTVSENA 564
>gi|348541103|ref|XP_003458026.1| PREDICTED: DNA nucleotidylexotransferase-like [Oreochromis
niloticus]
Length = 500
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 91/354 (25%), Positives = 153/354 (43%), Gaps = 63/354 (17%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
NK T+ F L + + ++ +A V++ LP+ +++ + LP +G+
Sbjct: 156 NKIFTDAFEVLAESHEFNDMEGPCLAFRRAASVLKSLPWTVQNLRVTEDLPCLGEHSMCV 215
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-- 327
I+EI+ G+ ++E DE+ + + LF V+G+GP TA+K Y +G R+ D+ E S
Sbjct: 216 IEEILQHGRSFEVEKILSDERYQILKLFTSVFGVGPKTAEKWYRRGLRSFSDVLAEPSIH 275
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 387
L Q+ G ++ DI + + E + + ++ +A + P+ I+ G +RRGK D+
Sbjct: 276 LNRMQQSGFLHYGDISRAVSKAEAQALGNIIDEAVHAITPDAILTLTGGFRRGKDFGHDV 335
Query: 388 DVVIMHP-------------DRKSHKGFL--SKYV------KKLKEMKFLRED------L 420
D ++ P DR H+G L +Y KL +F D L
Sbjct: 336 DFIVTTPQLGKEERLLTSVIDRLKHQGILLYCEYQASTFDESKLPSHRFEAMDHFAKCFL 395
Query: 421 IFSTHSEEV-----------------------YPRDIYAFGLIAWTGNDVLNRRLRLLAE 457
I +V P D YAF L+ W+G+ R LR A
Sbjct: 396 ILRLEDSQVDGGLQTAEEDRRGWRAVRVDLVSPPVDRYAFTLLGWSGSRQFERDLRRFAR 455
Query: 458 -SKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+ LD+ L+ T + L TEK++F LG ++EP +RN
Sbjct: 456 MERRMLLDNHALYDKT----------KKEFLAATTEKDIFAHLGLEYIEPWQRN 499
>gi|397510136|ref|XP_003825458.1| PREDICTED: DNA nucleotidylexotransferase [Pan paniscus]
Length = 509
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 97/356 (27%), Positives = 159/356 (44%), Gaps = 67/356 (18%)
Query: 212 NITEIFGKLINIYRALGEDRR----SFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N +IF +I E R ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NCNQIFTDAFDILAENCEFRENEDSCVTFMRAASVLKSLPFTIISMKDTEGIPCLGSKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++++ S
Sbjct: 223 GIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSDKS 282
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ I G +RRGK
Sbjct: 283 LKFTRMQKAGFLYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFITMTGGFRRGKKMGH 342
Query: 386 DLDVVIMHPDRKSHKGFLSKYVKKLKEMK--FLREDLIFST---------------HSEE 428
D+D +I P + L + V L E K L DL+ ST H ++
Sbjct: 343 DVDFLITSPGSTEDEEQLLQKVMNLWEKKGLLLYYDLVESTFEKLRLPSRKVDALDHFQK 402
Query: 429 VY---------------------------------PRDIYAFGLIAWTGNDVLNRRLRLL 455
+ P + AF L+ WTG+ R LR
Sbjct: 403 CFLIFKLPRQRVDSDQSSWQEGKTWKAIRVDLVLCPYERRAFALLGWTGSRQFERDLRRY 462
Query: 456 A-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
A + LD+ L+ T R LK ++E+E+F LG ++EP ERN
Sbjct: 463 ATHERKMILDNHALYDKT----------KRIFLKAESEEEIFAHLGLDYIEPWERN 508
>gi|194226389|ref|XP_001489108.2| PREDICTED: DNA polymerase beta-like isoform 1 [Equus caballus]
Length = 227
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 115/214 (53%), Gaps = 32/214 (14%)
Query: 323 KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA 382
KNED L H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+RRG
Sbjct: 19 KNEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAE 78
Query: 383 SCGDLDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL---------IFSTHSEE- 428
S GD+DV++ HP S L + V++L+++ F+ + L + S+
Sbjct: 79 SSGDMDVLLTHPSFTSESTKQPKLLHRVVEQLQKVHFITDTLSKGETKFMGVCQLPSKND 138
Query: 429 ------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSG 476
+ P+D Y G++ +TG+D+ N+ +R A KG+ +++ + P
Sbjct: 139 GKERPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL----- 193
Query: 477 GKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
G GV A L D+EK++FD++ + + EP +R+
Sbjct: 194 GVTGV-AGEPLPVDSEKDIFDYIQWKYREPKDRS 226
>gi|150392479|sp|A4PCD4.1|TDT_EULMA RecName: Full=DNA nucleotidylexotransferase; AltName: Full=Terminal
addition enzyme; AltName: Full=Terminal
deoxynucleotidyltransferase; Short=Terminal transferase
gi|139001468|dbj|BAF51669.1| deoxynucleotidyltransferase, terminal [Eulemur macaco]
Length = 511
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 97/358 (27%), Positives = 160/358 (44%), Gaps = 65/358 (18%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
+ N T+ F L Y + + ++ +A V++ LPF I + +G+P + ++
Sbjct: 163 NCNHVFTDAFEILAENYEFKENEGCAVTFLRAASVLKSLPFTIITMRDTEGIPCLEDKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++++ S
Sbjct: 223 CIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKIRSDKS 282
Query: 328 LTHS--QRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
LT + QR G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 283 LTFTRMQRAGFHYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKIGH 342
Query: 386 DLDVVIMHPDRKSH---------------KGFL-------SKYVK-KLKEMK------FL 416
D+D +I P KG L S + K KL K F
Sbjct: 343 DVDFLITSPGSTEEEEEQLLHKVMNLWEKKGLLLYCDLVESTFEKLKLPSRKVDALDHFQ 402
Query: 417 REDLIFSTHSEEV-----------------------YPRDIYAFGLIAWTGNDVLNRRLR 453
+ LI H + V P + AF L+ WTG+ R LR
Sbjct: 403 KCFLILKLHHQRVVDSQKSSQQDGKTWKAIRVDLVMCPYERRAFALLGWTGSRQFERDLR 462
Query: 454 LLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
A + LD+ GL+ T R LK ++E+E+F LG ++EP ERN
Sbjct: 463 RYATHERRMMLDNHGLWDKT----------KRIFLKAESEEEIFAHLGLDYIEPSERN 510
>gi|15277813|gb|AAH12920.1| Deoxynucleotidyltransferase, terminal [Homo sapiens]
gi|16923263|dbj|BAB72001.1| terminal deoxynucleotidyltransferase [Homo sapiens]
gi|119570364|gb|EAW49979.1| deoxynucleotidyltransferase, terminal [Homo sapiens]
gi|123981124|gb|ABM82391.1| deoxynucleotidyltransferase, terminal [synthetic construct]
gi|123995939|gb|ABM85571.1| deoxynucleotidyltransferase, terminal [synthetic construct]
Length = 509
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 96/356 (26%), Positives = 159/356 (44%), Gaps = 67/356 (18%)
Query: 212 NITEIFGKLINIYRALGEDRR----SFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N +IF +I E R ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NCNQIFTDAFDILAENCEFRENEDSCVTFMRAASVLKSLPFTIISMKDTEGIPCLGSKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++++ S
Sbjct: 223 GIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSDKS 282
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 283 LKFTRMQKAGFLYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKMGH 342
Query: 386 DLDVVIMHPDRKSHKGFLSKYVKKLKEMK--FLREDLIFST---------------HSEE 428
D+D +I P + L + V L E K L DL+ ST H ++
Sbjct: 343 DVDFLITSPGSTEDEEQLLQKVMNLWEKKGLLLYYDLVESTFEKLRLPSRKVDALDHFQK 402
Query: 429 VY---------------------------------PRDIYAFGLIAWTGNDVLNRRLRLL 455
+ P + AF L+ WTG+ R LR
Sbjct: 403 CFLIFKLPRQRVDSDQSSWQEGKTWKAIRVDLVLCPYERRAFALLGWTGSRQFERDLRRY 462
Query: 456 A-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
A + LD+ L+ T R LK ++E+E+F LG ++EP ERN
Sbjct: 463 ATHERKMILDNHALYDKT----------KRIFLKAESEEEIFAHLGLDYIEPWERN 508
>gi|327280070|ref|XP_003224777.1| PREDICTED: DNA nucleotidylexotransferase-like [Anolis carolinensis]
Length = 527
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 95/388 (24%), Positives = 166/388 (42%), Gaps = 76/388 (19%)
Query: 180 TNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKA 239
T T+ S D S + N + NK T+ F L Y ++ +A
Sbjct: 158 TKISDTSPLSTDIVSQYACQRRTTLN--NYNKKYTDAFEILAENYEMRENAGACLAFRRA 215
Query: 240 IPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGE 299
V++ LPF I ++ ++GLP +G+ ++ I++I+ G+ K+E +EK R+ LF
Sbjct: 216 ASVLKFLPFAIVRSNDIEGLPWMGEQVKGIIEDILEEGQSPKVEAVLNNEKYRSFKLFTS 275
Query: 300 VWGIGPATAQKLYEKGHRTLDDLK-NED-SLTHSQRLGLKYFDDIKTRIPRHEVEQMERL 357
V+G+ T++K + G R L+D+K N++ LT Q+ GL++++D+ + + + E + +
Sbjct: 276 VFGVALKTSEKWFMMGLRNLEDVKLNQNLQLTRMQKAGLQHYEDLISYVSKAEADSTSLM 335
Query: 358 LQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVI-------------------------- 391
++ + P ++ G +RRGK D+D +I
Sbjct: 336 VKDTVWKFSPSALVTLTGGFRRGKKMGHDVDFLITVPGSRPNEELLHLGLLLYYDLIEST 395
Query: 392 -------------------------MHPDRKSHKGFLSKYVKKLKEMK---FLREDLIFS 423
+H +R + L ++E+K +R DL+ S
Sbjct: 396 FEKSKLPSQRVDALDHFQKCFAILKLHKERVNQGTSLPPVASTVEEIKDWKAIRVDLVVS 455
Query: 424 THSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQGVR 482
P + +AF L+ WTG+ R LR A K LD+ L+ T
Sbjct: 456 -------PFEQHAFALLGWTGSRQFERDLRRYATHEKKMMLDNHALYDKT---------- 498
Query: 483 ARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+ L +E+E+F LG +LEP ERN
Sbjct: 499 KKIFLSASSEEEIFAHLGLDYLEPWERN 526
>gi|55634423|ref|XP_521569.1| PREDICTED: DNA nucleotidylexotransferase isoform 3 [Pan
troglodytes]
Length = 509
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 96/356 (26%), Positives = 159/356 (44%), Gaps = 67/356 (18%)
Query: 212 NITEIFGKLINIYRALGEDRR----SFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N +IF +I E R ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NCNQIFTDAFDILAENCEFRENEDSCVTFMRAASVLKSLPFTIISMKDTEGIPCLGSKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++++ S
Sbjct: 223 GIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSDKS 282
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 283 LKFTRMQKAGFLYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKMGH 342
Query: 386 DLDVVIMHPDRKSHKGFLSKYVKKLKEMK--FLREDLIFST---------------HSEE 428
D+D +I P + L + V L E K L DL+ ST H ++
Sbjct: 343 DVDFLITSPGSTEDEEQLLQKVMNLWEKKGLLLYYDLVESTFEKLRLPSRKVDALDHFQK 402
Query: 429 VY---------------------------------PRDIYAFGLIAWTGNDVLNRRLRLL 455
+ P + AF L+ WTG+ R LR
Sbjct: 403 CFLIFKLPRQRVDSDQSSWQEGKTWKAIRVDLVLCPYERRAFALLGWTGSRQFERDLRRY 462
Query: 456 A-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
A + LD+ L+ T R LK ++E+E+F LG ++EP ERN
Sbjct: 463 ATHERKMILDNHALYDKT----------KRIFLKAESEEEIFAHLGLDYIEPWERN 508
>gi|63054850|ref|NP_004079.3| DNA nucleotidylexotransferase isoform 1 [Homo sapiens]
gi|311033533|sp|P04053.3|TDT_HUMAN RecName: Full=DNA nucleotidylexotransferase; AltName: Full=Terminal
addition enzyme; AltName: Full=Terminal
deoxynucleotidyltransferase; Short=Terminal transferase
Length = 509
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 96/356 (26%), Positives = 159/356 (44%), Gaps = 67/356 (18%)
Query: 212 NITEIFGKLINIYRALGEDRR----SFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N +IF +I E R ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NCNQIFTDAFDILAENCEFRENEDSCVTFMRAASVLKSLPFTIISMKDTEGIPCLGSKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++++ S
Sbjct: 223 GIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSDKS 282
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 283 LKFTRMQKAGFLYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKMGH 342
Query: 386 DLDVVIMHPDRKSHKGFLSKYVKKLKEMK--FLREDLIFST---------------HSEE 428
D+D +I P + L + V L E K L DL+ ST H ++
Sbjct: 343 DVDFLITSPGSTEDEEQLLQKVMNLWEKKGLLLYYDLVESTFEKLRLPSRKVDALDHFQK 402
Query: 429 VY---------------------------------PRDIYAFGLIAWTGNDVLNRRLRLL 455
+ P + AF L+ WTG+ R LR
Sbjct: 403 CFLIFKLPRQRVDSDQSSWQEGKTWKAIRVDLVLCPYERRAFALLGWTGSRQFERDLRRY 462
Query: 456 A-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
A + LD+ L+ T R LK ++E+E+F LG ++EP ERN
Sbjct: 463 ATHERKMILDNHALYDKT----------KRIFLKAESEEEIFAHLGLDYIEPWERN 508
>gi|426365704|ref|XP_004049908.1| PREDICTED: DNA nucleotidylexotransferase [Gorilla gorilla gorilla]
Length = 509
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 96/356 (26%), Positives = 159/356 (44%), Gaps = 67/356 (18%)
Query: 212 NITEIFGKLINIYRALGEDRR----SFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N +IF +I E R ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NCNQIFTDAFDILAENCEFRENEDSCVTFMRAASVLKSLPFTIISMKDTEGIPCLGSKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++++ S
Sbjct: 223 GIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSDKS 282
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 283 LKFTRMQKAGFLYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKMGH 342
Query: 386 DLDVVIMHPDRKSHKGFLSKYVKKLKEMK--FLREDLIFST---------------HSEE 428
D+D +I P + L + V L E K L DL+ ST H ++
Sbjct: 343 DVDFLITSPGSTEDEEQLLQKVMNLWENKGLLLYYDLVESTFEKLRLPSRKVDALDHFQK 402
Query: 429 VY---------------------------------PRDIYAFGLIAWTGNDVLNRRLRLL 455
+ P + AF L+ WTG+ R LR
Sbjct: 403 CFLIFKLPRQRVDSDQSSWQEGKTWKAIRVDLVLCPYERRAFALLGWTGSRQFERDLRRY 462
Query: 456 A-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
A + LD+ L+ T R LK ++E+E+F LG ++EP ERN
Sbjct: 463 ATHERKMILDNHALYDKT----------KRIFLKAESEEEIFAHLGLDYIEPWERN 508
>gi|297687123|ref|XP_002821073.1| PREDICTED: DNA nucleotidylexotransferase [Pongo abelii]
Length = 509
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 96/356 (26%), Positives = 158/356 (44%), Gaps = 67/356 (18%)
Query: 212 NITEIFGKLINIYRALGEDRR----SFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N +IF +I E R ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NCNQIFTDAFDILAENCEFRENEDSCVTFMRAASVLKSLPFTIISMKDTEGIPCLGSKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++ + S
Sbjct: 223 GIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRLDKS 282
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 283 LKFTRMQKAGFLYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKMGH 342
Query: 386 DLDVVIMHPDRKSHKGFLSKYVKKLKEMK--FLREDLIFST---------------HSEE 428
D+D +I P + L + V L E K L DL+ ST H ++
Sbjct: 343 DVDFLITSPGSTEDEEQLLQKVMNLWEKKGLLLYYDLVESTFEKLRLPSRKVDALDHFQK 402
Query: 429 VY---------------------------------PRDIYAFGLIAWTGNDVLNRRLRLL 455
+ P + AF L+ WTG+ R LR
Sbjct: 403 CFLIFKLPRQRVDSDQSSWQEGKTWKAIRVDLVLCPYECRAFALLGWTGSRQFERDLRRY 462
Query: 456 A-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
A + LD+ L+ T R LK ++E+E+F LG ++EP ERN
Sbjct: 463 ATHERKMILDNHALYDKT----------KRIFLKAESEEEIFAHLGLDYIEPWERN 508
>gi|139001476|dbj|BAF51673.1| deoxynucleotidyltransferase, terminal [Lemur catta]
Length = 511
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 96/358 (26%), Positives = 161/358 (44%), Gaps = 65/358 (18%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
+ N T+ F L Y + + ++ +A V++ LPF I + +G+P + ++
Sbjct: 163 NCNHIFTDAFEILAENYEFKENEGCAVTFLRAASVLKSLPFTIITMRDTEGIPCLEDKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL +++++ S
Sbjct: 223 CIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSNIRSDKS 282
Query: 328 LTHS--QRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
LT + QR G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 283 LTFTQMQRAGFHYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKIGH 342
Query: 386 DLDVVIMHPDRKSH---------------KGFL-------SKYVK-KLKEMK------FL 416
D+D +I P KG L S + K KL K F
Sbjct: 343 DVDFLITSPGSTEEEEEQLLHKVMNLWEKKGLLLYCDLVESTFEKLKLPSRKVDALDHFQ 402
Query: 417 REDLIFSTHSEEV-----------------------YPRDIYAFGLIAWTGNDVLNRRLR 453
+ LI H + V P + AF L+ WTG+ R +R
Sbjct: 403 KCFLILKLHHQRVVDSEKSSQQDGKTWKAIRVDLVMCPYERRAFALLGWTGSRQFERDIR 462
Query: 454 LLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
A + LD+ GL+ T R LK ++E+E+F LG ++EP ERN
Sbjct: 463 RYATHERRMMLDNHGLWDKT----------KRIFLKAESEEEIFAHLGLDYIEPWERN 510
>gi|302681029|ref|XP_003030196.1| hypothetical protein SCHCODRAFT_57262 [Schizophyllum commune H4-8]
gi|300103887|gb|EFI95293.1| hypothetical protein SCHCODRAFT_57262 [Schizophyllum commune H4-8]
Length = 562
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 100/369 (27%), Positives = 156/369 (42%), Gaps = 86/369 (23%)
Query: 210 NKNITEIFGKLINIYRALGEDRRS-FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 268
N+N+ +I R L +DR S SY AI V + + V LP IGK M
Sbjct: 209 NQNLVSRLA-IIRRSRELEDDRISALSYDHAIGVTYPYEITEDRLNDVSKLPHIGKKMIA 267
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL------ 322
++E V TG + + ++ +++ F +++G+G TA+KLY G +T +D+
Sbjct: 268 KLEEYVETGDIEEAATIAASQRFQSLEAFTDLYGVGATTARKLYAAGCKTFEDVERYYGV 327
Query: 323 -----------KNEDSLTH-------SQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEE 364
+ + S T + R+ L+ +D+ RIPR EVE + + + +E
Sbjct: 328 DTGAGRARSGKQAKPSTTAKPKIPSITPRVALELREDLAQRIPRGEVEAIHAAVVQVLDE 387
Query: 365 VLPEVIILCGGSYRRGKASCGDLDVVIMHPDR----KSHKGFLSKYVKKLKEMKFL---- 416
V P + + G YRRGK+ GD+D+VI HP K KG + V++L E +
Sbjct: 388 VRPGCVTVVVGGYRRGKSLSGDVDIVIGHPKLSPTGKKVKGLSNLLVERLFERGLVTHLM 447
Query: 417 ----------------------------------REDLIFSTHSEEVYPRDIYAFGLIAW 442
R DLIF+ + Y ++ W
Sbjct: 448 YLSGFHTPDVSRSVHWDALEKALTVFVLPGGVHRRVDLIFAAP-------EAYWTAVVGW 500
Query: 443 TGNDVLNRRL-RLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGF 501
TG+ R + R A+ KG + D TGL T S G+ L +E++VF LG
Sbjct: 501 TGSKTFERDIRRWAADQKGLKFDSTGL---TRRSNGE-------ILCPKSEEDVFRMLGL 550
Query: 502 PWLEPHERN 510
W+ P RN
Sbjct: 551 DWIPPTLRN 559
>gi|336385326|gb|EGO26473.1| hypothetical protein SERLADRAFT_447668 [Serpula lacrymans var.
lacrymans S7.9]
Length = 541
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 110/467 (23%), Positives = 189/467 (40%), Gaps = 99/467 (21%)
Query: 61 VLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADR 120
V A+ ++ L++ LA+ K +++ QWLEDS++ G + P G+ A
Sbjct: 105 VTAVHMKQRLERHVDWELAKSK-AIVTPQWLEDSVKYGRPM----------PCGDYAALN 153
Query: 121 VLSQIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLT 180
VL + + E R S + + S+ + + E P LT
Sbjct: 154 VL-------HDETVHECPDRPSCNSGSPEPGPSHTSSRSPSTSKQIPEDAPQPADISLLT 206
Query: 181 NTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAI 240
+T S + S L P N+ + + K+ GE+R SY +AI
Sbjct: 207 HT----------SRYCCCRASPLVCP---NQGLIKQLDKIKEARNLEGEERSMLSYARAI 253
Query: 241 PVIEKLPFKIESAD---QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLF 297
VI+ P I ++ ++ LP +G+ + ++E + TG++++ + + + +S F
Sbjct: 254 SVIKAFPHVITHSNLKREISKLPYLGEKLLSMVEEFIKTGQINETQGILTSSRFQALSAF 313
Query: 298 GEVWGIGPATAQKLYEKGHRTLDDLK-------------------------NEDSLTHSQ 332
+ GIGP TA+KLY G RTL+DL+ +E + S
Sbjct: 314 TTIHGIGPHTARKLYNLGLRTLEDLERYYEVEPGRCGQETLAVIEAAGRESDEAIVERSI 373
Query: 333 RLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIM 392
++ L D IPR EVE+M R++ E++ + G YRRGK D+D+VI
Sbjct: 374 KVALALRHDFSQTIPRAEVEEMNRVVMSELEQIEQGCKSIVVGGYRRGKPQSNDVDIVIS 433
Query: 393 HPDRKSH----KGFLSKYVKKLKEMKFLREDLIFSTHSEE------------------VY 430
H + +S KG ++V++L E + + S E V
Sbjct: 434 HRNWESGAGKIKGLCKRFVRRLHERGLVTHVMHLSGFHEHNALRTHHWDSLEKALTVFVL 493
Query: 431 PRD------------------IYAFGLIAWTGNDVLNRRLRLLAESK 459
P D ++ ++ WTG+ + R LRL A+ +
Sbjct: 494 PGDGSQRRVYRRLDLIFAAPQVFWTAVVGWTGSTMFQRDLRLYAKQQ 540
>gi|328873769|gb|EGG22135.1| pleckstrin domain-containing protein [Dictyostelium fasciculatum]
Length = 1211
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 122/219 (55%), Gaps = 14/219 (6%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
NK +T+I ++ + G + +Y KAI I+ P KI S + K L G+G +
Sbjct: 102 NKLLTDILLQVGIFEKNKGATHKYNAYRKAIQSIQSYPKKITSGQESKKLDGVGLKISQK 161
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-EDSL 328
+QEI+ TGKL KLE + +E ++ + I T + E+ +T+ DL+ +L
Sbjct: 162 VQEILDTGKLKKLEKLQSNE------IYMAINEICKLTKNLVMEQNIKTIADLRKISHTL 215
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
H Q++GLKYFDDI+ R+PR E+E++E +++K + + +I GSYRRG + GD+D
Sbjct: 216 NHHQQIGLKYFDDIEQRVPREEIEEIEAIVKKCLKTIDKSIIADTCGSYRRGTPNSGDID 275
Query: 389 VVIMHPD-------RKSHKGFLSKYVKKLKEMKFLREDL 420
+++ HP+ +K+ + + V LK+ K + +D+
Sbjct: 276 ILLSHPNYTIQQKTKKNTFKIMERLVDALKKEKIIVDDI 314
>gi|449303273|gb|EMC99281.1| hypothetical protein BAUCODRAFT_85556 [Baudoinia compniacensis UAMH
10762]
Length = 716
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 115/210 (54%), Gaps = 5/210 (2%)
Query: 219 KLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTG 277
K I + R L D +Y +I + P+KI S ++ LPG + + + E TG
Sbjct: 351 KKIKLARLLTNDEIGVRAYSTSIASLAAYPYKIVSPREIMALPGCDQKIANLFVEWANTG 410
Query: 278 KLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLK--NEDSLTHSQRL 334
+ +E + D+ ++ + LF E+WG+G TA++ Y ++G R LDD+ +LT Q++
Sbjct: 411 TIKAVEDVDADDDLKVLRLFWEIWGVGATTAREFYFDRGWRDLDDIVEFGWSTLTRVQQI 470
Query: 335 GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE-VIILCGGSYRRGKASCGDLDVVIMH 393
G+KY+++ IPR EVE++ R++ + +V + V L G YRRGK +CGD+D+++ H
Sbjct: 471 GVKYYEEFLDPIPRAEVEEIGRIIHRHAVKVRDDGVQSLIVGGYRRGKQACGDVDMIVSH 530
Query: 394 PDRKSHKGFLSKYVKKLKEMKFLREDLIFS 423
D ++ V L+E ++ L+ S
Sbjct: 531 IDEGQTLNIVNDIVASLEEEGWITHTLLLS 560
>gi|332212412|ref|XP_003255313.1| PREDICTED: DNA nucleotidylexotransferase [Nomascus leucogenys]
Length = 509
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 97/356 (27%), Positives = 158/356 (44%), Gaps = 67/356 (18%)
Query: 212 NITEIFGKLINIYRALGEDRR----SFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N +IF +I E R ++ +A V++ LPF I S +G+P +G +
Sbjct: 163 NCNQIFTDAFDILAENCEFRENEDSCVAFMRAASVLKSLPFTIISMKDTEGIPCLGSKEK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++++ S
Sbjct: 223 GIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSDKS 282
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ I G +RRGK
Sbjct: 283 LKFTQMQKAGFLYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDASITMTGGFRRGKKMGH 342
Query: 386 DLDVVIMHPDRKSHKGFLSKYVKKLKEMK--FLREDLIFST---------------HSEE 428
D+D +I P + L + V L E K L DL+ ST H ++
Sbjct: 343 DVDFLITSPGSTEDEEQLLQKVMNLWEKKGLLLYYDLVESTFEKLRLPSRKVDALDHFQK 402
Query: 429 VY---------------------------------PRDIYAFGLIAWTGNDVLNRRLRLL 455
+ P + AF L+ WTG+ R LR
Sbjct: 403 CFLIFKLPRQRVDGDQSSWQEGKTWKAIRVDLVLCPYERRAFALLGWTGSRQFERDLRRY 462
Query: 456 A-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
A + LD+ L+ T R LK ++E+E+F LG ++EP ERN
Sbjct: 463 ATHERKMILDNHALYDKT----------KRIFLKAESEEEIFAHLGLDYIEPWERN 508
>gi|452000344|gb|EMD92805.1| hypothetical protein COCHEDRAFT_1193188 [Cochliobolus
heterostrophus C5]
Length = 658
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 111/210 (52%), Gaps = 5/210 (2%)
Query: 219 KLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTG 277
K I R L ED +Y I I P+K+ ++ LPG + E TG
Sbjct: 300 KKIRTNRILIEDEIGVRAYSTIIAAIAAYPYKLSHPREIAQLPGCDEKTAVLFVEWKNTG 359
Query: 278 KLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRT-LDDL--KNEDSLTHSQRL 334
K+ ++E E DE ++ + F ++WG+G TA+ Y H T LDD+ + L Q++
Sbjct: 360 KIKEVEDCENDEAMKVLRSFYDIWGVGAKTARHFYYDNHWTELDDIIEHGWNDLDRVQQI 419
Query: 335 GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI-ILCGGSYRRGKASCGDLDVVIMH 393
G+KY+++ + IPR EVE + +++ ++ E I I G YRRGK+ GD+D+++ H
Sbjct: 420 GIKYYEEFQEPIPRAEVEHIAAVVRDHAVKLRDEHISITIVGGYRRGKSVSGDVDIIVSH 479
Query: 394 PDRKSHKGFLSKYVKKLKEMKFLREDLIFS 423
P+ +S G + + V+ L++ +++ L S
Sbjct: 480 PELESTAGLVQEIVESLEDAQWITHTLTMS 509
>gi|406868241|gb|EKD21278.1| DNA polymerase beta [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 665
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 94/362 (25%), Positives = 152/362 (41%), Gaps = 65/362 (17%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N E K+ I G+ SY AI I PFKI+ +V L G+
Sbjct: 304 NDEFVEQLRKIKKIREIEGDQVGFRSYNAAIASIAAYPFKIKCLAEVTRLHACGQKFAQL 363
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSL 328
E TGK++++E + D++ + I +F + +G TA Y +G R LDD+ +N + +
Sbjct: 364 WYEWHRTGKVAEIEDKKVDDRFKIIEIFYGIHDVGAHTALSYYARGWRDLDDIVENWNKI 423
Query: 329 THSQRLGLKYFDDI-KTRIPRHEVEQMERLLQKAGEEVLPEV-IILCGGSYRRGKASCGD 386
+Q++G+KY+D+ K +IPR EV+ + + + P +++CGG YRRGK GD
Sbjct: 424 QRNQQIGVKYYDEFNKMKIPRSEVKNIGDVTLDHANRLRPGFQLVICGG-YRRGKLMSGD 482
Query: 387 LDVVIMHPDRKSHKGFLSKYVKKLKEMKFL------------------------------ 416
+D+++ HPD ++ G + + + L++ +L
Sbjct: 483 VDIMLSHPDEEATDGTIHELLNSLEQDGYLTHRLDVSDRNSRRGQEPSQNGGSGAASSGF 542
Query: 417 ------------------REDLIFSTHSEEVYPR---DIY-------AFGLIAWTGNDVL 448
+DL + H+ P DI ++ WTG +
Sbjct: 543 DSLDKGLIVWQDPDWPTKEDDLKANPHARNPNPHRRVDILVSPWKTAGCAVLGWTGGTMF 602
Query: 449 NRRLRLLAESK-GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPH 507
R LRL K R D +G+ G + A + + EK VF L PW EP
Sbjct: 603 ERDLRLYCREKLNLRFDSSGI--RRRDDGTWLDLEAGGTDMVEKEKMVFAGLKIPWREPT 660
Query: 508 ER 509
ER
Sbjct: 661 ER 662
>gi|401889239|gb|EJT53177.1| hypothetical protein A1Q1_07852 [Trichosporon asahii var. asahii
CBS 2479]
Length = 821
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 109/188 (57%), Gaps = 15/188 (7%)
Query: 247 PFKIESADQVKGLPGIGKSMQDHIQEIVT-----------TGKLSKLEHFEKDEKVRTIS 295
P +I+S Q++ L +G+SM ++ +V+ TG +L +FE ++ RTI+
Sbjct: 501 PEQIKSGSQIRHLRFVGESMAKRVRLMVSIRLMRQIDEILTGAKGRL-YFEDTDQARTIA 559
Query: 296 LFGEVWGIGPATAQKLYEKGHRTLDDLKNED-SLTHSQRLGLKYFDDIKTRIPRHEVEQM 354
F V+G+G A +LY +G R+++DL +D LT Q++G+K +DD+ RIPR E Q+
Sbjct: 560 KFQNVYGVGSRCAHELYSRGARSIEDLATKDFGLTVGQKIGVKLYDDLCARIPREECRQL 619
Query: 355 ERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMH--PDRKSHKGFLSKYVKKLKE 412
+++ +V + GSYRRG+A+ GD+D++I D K+H+G + K V+ L +
Sbjct: 620 FEIVRDQTLSFDDKVFVEIMGSYRRGEANSGDIDILITRDPSDGKTHQGLIGKVVEALTK 679
Query: 413 MKFLREDL 420
+F+ L
Sbjct: 680 KEFITHAL 687
>gi|146078011|ref|XP_001463420.1| mitochondrial DNA polymerase beta [Leishmania infantum JPCM5]
gi|398010897|ref|XP_003858645.1| mitochondrial DNA polymerase beta [Leishmania donovani]
gi|134067505|emb|CAM65784.1| mitochondrial DNA polymerase beta [Leishmania infantum JPCM5]
gi|322496854|emb|CBZ31924.1| mitochondrial DNA polymerase beta [Leishmania donovani]
Length = 376
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 104/367 (28%), Positives = 165/367 (44%), Gaps = 65/367 (17%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIE-KLPFKIESADQVKGLPGIGKSM 266
D +NI IF ++ ++ ALGE + SY+++I ++ L + + +K G G +
Sbjct: 10 DHRENIIRIFQEMADLNNALGEKYKVSSYHRSIESLKTNLDKPLNTPQDLKAFSGFGAKL 69
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNE 325
+EI+ TGKL +LE K K++ I +V G GP A L+++ G T+D+L +
Sbjct: 70 LKKAEEIMATGKLEELESKTKP-KLKAIQELTQVHGFGPRAAAALFDREGIFTVDELLQK 128
Query: 326 ----DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVL-PEVIILCGGSYRRG 380
SLT QR+G+KYF DI +IP E E L++ EVL + IL GSYRR
Sbjct: 129 ADSIPSLTDQQRVGIKYFYDINEKIPMQESVLHENYLREKCMEVLGKDFSILICGSYRRR 188
Query: 381 KASCGDLDVVIMH-------PDRKSHKGFLSKYVKKLKEMKFLREDLI------------ 421
GD+D ++ + + G L +V+ L+ +K+L +
Sbjct: 189 HPFSGDVDAILSRTLDAPPLSEPVAATGVLGHFVEFLESLKYLEATMAQGPLKYMGMGRL 248
Query: 422 --------FSTHSEEVYPR---DIYAF-------GLIAWTGNDVLNRRLRLLAESKGYRL 463
+ +VY DI ++ +TG+ N +R A SKGY L
Sbjct: 249 PPRIVRDKAGRENTKVYKARRVDIRLIETKSVPTAMLTFTGSKNFNVIMRQAAISKGYLL 308
Query: 464 DDTGLFP--------ATYGSGGKQGVRARTSL------------KFDTEKEVFDFLGFPW 503
++ GLF A Y G +G A L + +E++VFD LG P+
Sbjct: 309 NEYGLFKLGTPEEARALYERIGIRGKNAGEELGVPKDELEDKRVEVRSEQDVFDVLGMPY 368
Query: 504 LEPHERN 510
+P R+
Sbjct: 369 AKPENRD 375
>gi|189206734|ref|XP_001939701.1| DNA polymerase beta [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187975794|gb|EDU42420.1| DNA polymerase beta [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 661
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 135/278 (48%), Gaps = 12/278 (4%)
Query: 184 STASASPDFSSHHITDPSLLYNPPD-LNKNITEIFGKLINIYRALGEDRRSFSYYKAIPV 242
S A P++ + + + P + N++ E K+ + +D +Y I
Sbjct: 268 SDIPAPPEWVKNCVKYACQRFTPANGPNEDFLEQLKKIRTARTLIDDDIGVRAYSTIIAS 327
Query: 243 IEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWG 302
I P+K+ ++ LPG + E TGK+ +E +E DE ++ + F +WG
Sbjct: 328 IAAYPYKLSHPRELARLPGCDEKTVALFVEWKNTGKIQAVEDYENDEAMKVLRCFYNIWG 387
Query: 303 IGPATAQKLYEKGH-RTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQ 359
+G T + Y H + LDD+ + L Q++G+KY+++ IPR EVE++ +++
Sbjct: 388 VGAKTTRHFYYNNHWKELDDIVEYGWNDLKRVQQIGVKYYEEFLLPIPRDEVERIAAVVR 447
Query: 360 KAGEEVLPE-VIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLRE 418
+ + + V + G YRRGK GD+D+++ HPD +S G + + V+ L+E +++
Sbjct: 448 EHAVRLRDDRVTVTLVGGYRRGKTESGDVDMIVSHPDLESTAGLVQEIVESLEETEWITH 507
Query: 419 DLIFSTHS----EEVYPRDIYAFGLIAWTGNDVLNRRL 452
L S S ++V P + +A G D L++ L
Sbjct: 508 TLTMSLTSTNRGQQVLP---FRSTRVAGAGFDTLDKAL 542
>gi|6003545|gb|AAF00495.1|AF182167_1 DNA polymerase beta [Leishmania infantum]
Length = 376
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 104/367 (28%), Positives = 165/367 (44%), Gaps = 65/367 (17%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIE-KLPFKIESADQVKGLPGIGKSM 266
D +NI IF ++ ++ ALGE + SY+++I ++ L + + +K G G +
Sbjct: 10 DHRENIIRIFQEMADLNNALGEKYKVSSYHRSIESLKTNLDKPLNTPQDLKAFSGFGAKL 69
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNE 325
+EI+ TGKL +LE K K++ I +V G GP A L+++ G T+D+L +
Sbjct: 70 LKKAEEIMATGKLEELESKTKP-KLKAIQELTQVHGFGPRAAAALFDREGIFTVDELLQK 128
Query: 326 ----DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVL-PEVIILCGGSYRRG 380
SLT QR+G+KYF DI +IP E E L++ EVL + IL GSYRR
Sbjct: 129 ADSIPSLTDQQRVGIKYFYDINEKIPMQESVLHENYLREKCMEVLGKDFSILICGSYRRR 188
Query: 381 KASCGDLDVVIMH-------PDRKSHKGFLSKYVKKLKEMKFLREDLI------------ 421
GD+D ++ + + G L +V+ L+ +K+L +
Sbjct: 189 HPFSGDVDAILSRTLDAPPLSEPVAATGVLGHFVEFLESLKYLEATMAQGPLKYMGMGRL 248
Query: 422 --------FSTHSEEVYPR---DIYAF-------GLIAWTGNDVLNRRLRLLAESKGYRL 463
+ +VY DI ++ +TG+ N +R A SKGY L
Sbjct: 249 PPRIVRDKAGRENTKVYKARRVDIRLIETKSVPTAMLTFTGSKNFNVIMRQAAISKGYLL 308
Query: 464 DDTGLFP--------ATYGSGGKQGVRARTSL------------KFDTEKEVFDFLGFPW 503
++ GLF A Y G +G A L + +E++VFD LG P+
Sbjct: 309 NEYGLFKLGTPEEARALYERIGIRGKNAGEELGVPKDELEDKRVEVRSEQDVFDVLGMPY 368
Query: 504 LEPHERN 510
+P R+
Sbjct: 369 AKPENRD 375
>gi|395828367|ref|XP_003787354.1| PREDICTED: DNA nucleotidylexotransferase [Otolemur garnettii]
gi|139001511|dbj|BAF51681.1| deoxynucleotidyltransferase, terminal [Otolemur garnettii]
Length = 511
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 99/358 (27%), Positives = 163/358 (45%), Gaps = 65/358 (18%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
+ N T+ F + Y + S ++ +A V++ LPF I S +G+P +G +++
Sbjct: 163 NCNHIFTDAFEIMAENYEFRENEGYSAAFMRAASVLKSLPFTIISMKDTEGVPCLGDNVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++++ S
Sbjct: 223 CIIEEIIEEGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKIRSDKS 282
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 283 LRFTRMQQAGFLYYEDLVSCVTRAEAEAVGVLVKEAVRAFLPDAFVTMTGGFRRGKNIGH 342
Query: 386 DLDVVIMHP---------------DRKSHKGFL-------SKYVK-KLKEMK------FL 416
D+D +I P D KG L S + K KL K F
Sbjct: 343 DVDFLITSPGSTEEEEQQLLHKIMDLWEKKGLLLYCDLVESTFEKLKLPSRKVDALDHFQ 402
Query: 417 REDLIFSTHSEEV-----------------------YPRDIYAFGLIAWTGNDVLNRRLR 453
+ LIF H + V P + A+ L+ WTG+ R LR
Sbjct: 403 KCFLIFKLHHQRVVDSEQSNQQEGKTWKAIRVDLVMCPYERRAYALLGWTGSRQFERDLR 462
Query: 454 LLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
A + LD+ GL+ T R LK ++E+E+F LG ++EP ERN
Sbjct: 463 RYATHERKMILDNHGLWDKT----------KRIFLKAESEEEIFAHLGLDYIEPWERN 510
>gi|393237267|gb|EJD44810.1| hypothetical protein AURDEDRAFT_124919 [Auricularia delicata
TFB-10046 SS5]
Length = 513
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 85/340 (25%), Positives = 143/340 (42%), Gaps = 83/340 (24%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD- 268
N+ + E + + GE+R SY +AI I+ P + + VK +P +G + +
Sbjct: 204 NQRLIEELAVIRKARKLEGEERSELSYARAIAGIKAQPAEFRTIKDVKDVPFVGAKISNM 263
Query: 269 --------------HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK 314
++E + G++S+ E E+ +++S V GIGP++A++LY +
Sbjct: 264 VRLHRLPLADPDSSQVEEYLDHGRISEAEELRASERYQSLSALTTVHGIGPSSARELYAR 323
Query: 315 GHRTLD------------------------DLKNEDSLTHSQRLGLKYFDDIKTRIPRHE 350
G R LD D+++ED L R L D++ +IPR E
Sbjct: 324 GLRDLDALYRFYGVVVPDGYGGWVRNEEELDVQDEDGLDSVIREALALRDELNKKIPRQE 383
Query: 351 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 410
VE++ + + + + P G Y CG L V+ + PDR +
Sbjct: 384 VERIASAIFRELQAIEP------GCFY----TICGGLVVLRLAPDRTAR----------- 422
Query: 411 KEMKFLREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 470
R DLIF+ P + Y ++ WTG+ + R LRL A+ G + +D+G+
Sbjct: 423 ------RVDLIFA-------PPEAYWAAVVGWTGSIMFERDLRLAAKDMGLKFNDSGITK 469
Query: 471 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
G + E++VF G PW+EP RN
Sbjct: 470 RMNGE----------VIPAKDERDVFAICGLPWIEPVWRN 499
>gi|432901792|ref|XP_004076949.1| PREDICTED: DNA nucleotidylexotransferase-like, partial [Oryzias
latipes]
Length = 355
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 110/204 (53%), Gaps = 2/204 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
NK +T+ F L Y + + ++ +A V++ L +++ S+ QV LP +G++M++
Sbjct: 150 NKTLTDAFEVLAENYEFNEMEGQCLAFRRAASVLKSLSWQVRSSHQVHDLPCLGETMEEL 209
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-- 327
++EI+ G+ ++ DE+ +T+ F V+G+G TA+K Y +G RT D+ E S
Sbjct: 210 VEEILQYGRSFEVAKILSDERFQTLKGFTSVFGVGLKTAEKWYRRGLRTFPDVMAEPSIR 269
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 387
L Q+ G ++ DI + + E + ++ +A + P I+ G +RRGK D+
Sbjct: 270 LNRMQQSGFLHYGDISRHVSKAEALALGNIIDEAVHAIAPNGILTLTGGFRRGKEFGHDV 329
Query: 388 DVVIMHPDRKSHKGFLSKYVKKLK 411
D ++ P+R +G L+ +K LK
Sbjct: 330 DFIVTTPERGQEEGLLTNIIKHLK 353
>gi|157864819|ref|XP_001681118.1| mitochondrial DNA polymerase beta [Leishmania major strain
Friedlin]
gi|68124412|emb|CAJ02268.1| mitochondrial DNA polymerase beta [Leishmania major strain
Friedlin]
Length = 376
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 104/367 (28%), Positives = 164/367 (44%), Gaps = 65/367 (17%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIE-KLPFKIESADQVKGLPGIGKSM 266
D +NI IF ++ ++ ALGE + SY+++I ++ L + + +K G G +
Sbjct: 10 DHRENIIRIFQEMADLNNALGEKYKVSSYHRSIESLKTNLDKPLNTPQDLKAFSGFGTKL 69
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNE 325
+EI+ TGKL +LE K K++ I +V G GP A L+++ G T+D+L +
Sbjct: 70 LKKAEEIMATGKLEELESKTK-PKLKAIQELTQVHGFGPRAAAALFDREGIFTVDELLQK 128
Query: 326 ----DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVL-PEVIILCGGSYRRG 380
SLT QR+G+KYF DI +IP E E L+ EVL + IL GSYRR
Sbjct: 129 ADSIPSLTDQQRVGIKYFYDINEKIPMQESVLHENYLRDKCMEVLGKDFSILICGSYRRR 188
Query: 381 KASCGDLDVVIMH-------PDRKSHKGFLSKYVKKLKEMKFLREDLI------------ 421
GD+D ++ + + G L +V+ L+ +K+L +
Sbjct: 189 HPFSGDVDAILSRTLDAPPLSEPVAATGVLGHFVEFLESLKYLEATMAQGPLKYMGMGRL 248
Query: 422 --------FSTHSEEVYPR---DIYAF-------GLIAWTGNDVLNRRLRLLAESKGYRL 463
+ +VY DI ++ +TG+ N +R A SKGY L
Sbjct: 249 PPRIVRDKAGRENTKVYKARRVDIRLIETKSVPTAMLTFTGSKNFNVIMRQAAISKGYLL 308
Query: 464 DDTGLFP--------ATYGSGGKQGVRARTSL------------KFDTEKEVFDFLGFPW 503
++ GLF A Y G +G A L + +E++VFD LG P+
Sbjct: 309 NEYGLFKLGTPEEARALYERIGIRGKNAGEELGVPKDELEDKRVEVRSEQDVFDVLGMPY 368
Query: 504 LEPHERN 510
+P R+
Sbjct: 369 AKPENRD 375
>gi|428178310|gb|EKX47186.1| hypothetical protein GUITHDRAFT_52423, partial [Guillardia theta
CCMP2712]
Length = 274
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 131/268 (48%), Gaps = 39/268 (14%)
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
+ IQE+ TG+++KLE + + ++ + VWG+G A++L G R++++LK + +
Sbjct: 4 EKIQELFDTGRIAKLETMKSNPNLKILQELKNVWGVGDTLARRLIAAGIRSVEELKGKTT 63
Query: 328 L----------THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI-ILCGGS 376
+ TH R+G+++ +DI T++PR EV +E+ +++ + V + ++ GS
Sbjct: 64 VGEGARQVHLPTHV-RIGVEHNEDINTKMPRREVAALEQAIRQHAQRVGGATVEVIACGS 122
Query: 377 YRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKE----------------------MK 414
YRRGK GD+D ++ D + K +++L+ M
Sbjct: 123 YRRGKQESGDIDCLLTRKDGGCGVEVVEKLMEELQSEFDVKTLSLPSRSANHDGCCNWMG 182
Query: 415 FLREDLI---FSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPA 471
LR + + YP D F L+ TG+D NR +RLLA+ KG L D G++
Sbjct: 183 ILRRKGTEGRWRRFDVKSYPIDQVPFALLHMTGSDHFNRSMRLLAKKKGLSLSDHGIYRV 242
Query: 472 TYGSGGKQGVRARTSLKFDTEKEVFDFL 499
T GG++ K EK+VFD L
Sbjct: 243 T--RGGEEEENFSLPFKCTREKDVFDIL 268
>gi|403259830|ref|XP_003922400.1| PREDICTED: DNA nucleotidylexotransferase [Saimiri boliviensis
boliviensis]
Length = 509
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 97/357 (27%), Positives = 160/357 (44%), Gaps = 68/357 (19%)
Query: 212 NITEIFGKLINIYRALGEDRR----SFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N +IF +I E R ++ +A V++ LPF I S +G+P +G ++
Sbjct: 162 NFNQIFTDAFDILAENCEFRENEDSCVTFMRAASVLKSLPFTIISMKDTEGIPCLGSKVK 221
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL +++E S
Sbjct: 222 GIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSEKS 281
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 282 LKFTRMQQAGFLYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKMGH 341
Query: 386 DLDVVIMHP-DRKSHKGFLSKYVKKLKEMK--FLREDLIFST---------------HSE 427
D+D +I P + + L + V L E K L DL+ ST H +
Sbjct: 342 DVDFLITSPGSAEDEEQQLLQKVMNLWEKKGLLLYYDLVESTFEKLRLPSRKVDALDHFQ 401
Query: 428 EVY---------------------------------PRDIYAFGLIAWTGNDVLNRRLRL 454
+ + P + AF L+ WTG+ R LR
Sbjct: 402 KCFLIFKLPRQRLDSDQPSWQEGKTWKAIRVDLVMCPYERRAFALLGWTGSRQFERDLRR 461
Query: 455 LA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
A + LD+ L+ T R LK ++E+E+F LG ++EP ERN
Sbjct: 462 YATHEQKMILDNHALYDKT----------KRIFLKAESEEEIFAHLGLDYIEPWERN 508
>gi|119570149|gb|EAW49764.1| polymerase (DNA directed), lambda, isoform CRA_h [Homo sapiens]
Length = 160
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 90/144 (62%), Gaps = 4/144 (2%)
Query: 313 EKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIIL 372
+KG R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA + ++ +
Sbjct: 21 QKGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCV 80
Query: 373 CGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEVYPR 432
GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ S+E +
Sbjct: 81 ACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLV----SQEENGQ 136
Query: 433 DIYAFGLIAWTGNDVLNRRLRLLA 456
G+ G +RRL ++
Sbjct: 137 QQKYLGVCRLPGPGRRHRRLDIIV 160
>gi|291404551|ref|XP_002718596.1| PREDICTED: terminal deoxynucleotidyltransferase [Oryctolagus
cuniculus]
Length = 510
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 101/380 (26%), Positives = 167/380 (43%), Gaps = 70/380 (18%)
Query: 189 SPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRS----FSYYKAIPVIE 244
+P + H I++ + LN N IF I E R + ++ +A V++
Sbjct: 142 APALAVHRISEYAC-KRRTTLN-NCNRIFTDAFEILAENSEFRENEDSYVTFIRAASVLK 199
Query: 245 KLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIG 304
LPF I S +G+P +G ++ I+EI+ G+ S+++ DE+ + LF V+G+G
Sbjct: 200 SLPFPIVSMKDTEGIPCLGDKVKGIIEEIIEEGESSEVKAVLNDERYQCFKLFTAVFGVG 259
Query: 305 PATAQKLYEKGHRTLDDLKNEDSL--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAG 362
T++K + G RTL ++ + SL T Q+ G +Y++D+ + + R E E ++ L+++A
Sbjct: 260 LKTSEKWFRMGFRTLSKIREDKSLKFTRMQQAGFRYYEDLVSCVTRAEAEAVDVLVKEAV 319
Query: 363 EEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKS-------HK--------------G 401
LP I G +RRGK D+D +I P+ HK
Sbjct: 320 RAYLPGAFITMTGGFRRGKKIGHDVDFLITSPESTEEDEQQLLHKVVNLWEKKGLLLYHD 379
Query: 402 FLSKYVKKLKEMK--------FLREDLIFSTHSEEV----------------------YP 431
F+ +KLK+ F + LI E V P
Sbjct: 380 FMESTFEKLKQPSRKVDALDHFQKCFLILKLPHERVDSDRPSQQEGKNWKAIRVDLVMCP 439
Query: 432 RDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFD 490
+ +AF L+ WTG+ R LR A + LD+ L+ T R L+ +
Sbjct: 440 YECHAFALLGWTGSRQFERDLRRYATHERRMILDNHALYDKT----------KRMFLQAE 489
Query: 491 TEKEVFDFLGFPWLEPHERN 510
+E+E+F LG ++EP ERN
Sbjct: 490 SEEEIFAHLGLDYIEPWERN 509
>gi|400596143|gb|EJP63927.1| condensin complex component SMC1 [Beauveria bassiana ARSEF 2860]
Length = 2316
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 91/377 (24%), Positives = 159/377 (42%), Gaps = 76/377 (20%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESAD--------- 254
NPP+ + I E+ K I R L D+ +Y +I I P+KI+
Sbjct: 1941 NPPN-SSFIDEL--KSIRTIRLLQGDKIGVRAYSTSIASIAAYPYKIQKPQGTAFTLIPE 1997
Query: 255 ------------QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWG 302
+V LPG G + + QE TG+ ++ + D K+ + +F ++WG
Sbjct: 1998 DLTSMLDSNYLAEVSRLPGCGSKIAELYQEWHATGQTEEMRESKADPKIDVLRIFYDIWG 2057
Query: 303 IGPATAQKLYEKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQK 360
+G TA+ Y+KG R LDD+ SL+ Q++G+KY+++ + +I R EV ++ ++
Sbjct: 2058 VGDTTARHFYQKGWRDLDDVVEHGWKSLSRVQQIGVKYYEEFQKKIGRDEVARIADVILD 2117
Query: 361 AGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDL 420
+ ++ G YRRG+ GD+DV++ H + + K V ++ ++ L
Sbjct: 2118 HAHRLDQAYELIVVGGYRRGREENGDVDVILSHKEEHKTSRLVEKLVLSIENDNYITHTL 2177
Query: 421 IFSTHSEE-----------------------------VYPRDIYAF-------------- 437
ST + E + P+D A
Sbjct: 2178 SLSTRNSERGQVPLQWKGEGSTSGAGFDTLDKAMVVWLDPKDAKALHRRVDIIVSPWKTV 2237
Query: 438 --GLIAWTGNDVLNRRL-RLLAESKGYRLDDTGLFPATYGS--GGKQGVRARTSLKFDTE 492
++ W+G R L R + KG + D +G+ GS ++G + S++ + E
Sbjct: 2238 GCAILGWSGETTFQRDLRRYCKKEKGLKFDSSGIRNRANGSWVDLERGDGSADSME-EAE 2296
Query: 493 KEVFDFLGFPWLEPHER 509
+ VFD L PW P +R
Sbjct: 2297 RRVFDGLNIPWRPPWDR 2313
>gi|339437|gb|AAA36726.1| terminal transferase [Homo sapiens]
Length = 508
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 93/355 (26%), Positives = 156/355 (43%), Gaps = 66/355 (18%)
Query: 212 NITEIFGKLINIYRALGEDRR----SFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N +IF +I E R ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NCNQIFTDAFDILAENCEFRENEDSCVTFMRAASVLKSLPFTIISMKDTEGIPCLGSKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++++ S
Sbjct: 223 GIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSDKS 282
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 283 LKFTRMQKAGFLYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKMGH 342
Query: 386 DLDVVIMHPDRKSHKGFLSKYVKKLKEMK--FLREDLIFST---------------HSEE 428
D+D +I P + L + V L E K L DL+ ST H ++
Sbjct: 343 DVDFLITSPGSTEDEEQLLQKVMNLWEKKGLLLYYDLVESTFEKLRLPSRKVDALDHFQK 402
Query: 429 VY---------------------------------PRDIYAFGLIAWTGNDVLNRRLRLL 455
+ P + AF L+ WTG+ R
Sbjct: 403 CFLIFKLPRQRVDSDQSSWQEGKTWKAIRVDLVLCPYERRAFALLGWTGSRFERDLRRYA 462
Query: 456 AESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+ LD+ L+ T R LK ++E+E+F LG ++EP ERN
Sbjct: 463 THERKMILDNHALYDKT----------KRIFLKAESEEEIFAHLGLDYIEPWERN 507
>gi|351704887|gb|EHB07806.1| DNA nucleotidylexotransferase [Heterocephalus glaber]
Length = 509
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 99/360 (27%), Positives = 160/360 (44%), Gaps = 74/360 (20%)
Query: 212 NITEIFGKLINIYRALGEDRR-------SFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 264
N IF N + L ED +Y +A V++ LPF I S +G+P +G
Sbjct: 162 NCNYIF---TNAFEILAEDCEFRENEGFYVTYMRAASVLKSLPFTIISMKDTEGIPCLGG 218
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN 324
++ I+EI+ G+ S+++ +E+ ++ LF V+G+G T++K + G R+L +++
Sbjct: 219 RVKCIIEEIIEDGESSEVKAVLNNERYKSFKLFTSVFGVGLKTSEKWFRMGFRSLSKIRS 278
Query: 325 EDSLTHS--QRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA 382
+ SLT + Q+ G Y++D+ + + R E E + L+++A LP I G +RRGK
Sbjct: 279 DKSLTFTRMQKAGFLYYEDLVSCVTRAEAEAVNMLVKEAVWTFLPGAFISMTGGFRRGKE 338
Query: 383 SCGDLDVVIMHPDRK---------------SHKGFL-------SKYVK-KLKEMK----- 414
D+D +I P+ KG L S + K KL K
Sbjct: 339 IGHDVDFLITSPEVTEDEEQQLLHKVINLWEKKGLLLYSDLVESTFEKLKLPSRKVDALD 398
Query: 415 -FLREDLIFSTHSEEV----------------------YPRDIYAFGLIAWTGNDVLNRR 451
F + LI H + V P + AF L+ WTG+ R
Sbjct: 399 HFQKCFLILKLHHQRVDNDKSPQQGGKTWKAIRVDLVMCPYERRAFALLGWTGSRQFERD 458
Query: 452 LRLLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
LR A + LD+ L+ T +T LK ++E+E+F LG ++EP ERN
Sbjct: 459 LRRYATHERKMILDNHALYDKT----------KKTFLKAESEEEIFTHLGLDYIEPWERN 508
>gi|73998101|ref|XP_849761.1| PREDICTED: DNA nucleotidylexotransferase isoform 2 [Canis lupus
familiaris]
Length = 510
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 95/356 (26%), Positives = 158/356 (44%), Gaps = 63/356 (17%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
+ N T+ F L Y + S ++ +A V++ LPF I S +G+P +G ++
Sbjct: 164 NYNNVFTDAFEVLAENYEFRENEVFSLTFMRAASVLKSLPFTIISMKDTEGIPCLGDQVK 223
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL +K++ S
Sbjct: 224 CIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKIKSDKS 283
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 284 LKFTPMQKAGFLYYEDLVSCVTRAEAEAVGVLVKEAVGAFLPDAFVTMTGGFRRGKKMGH 343
Query: 386 DLDVVIMHP---------------DRKSHKGFL-------SKYVK-KLKEMK------FL 416
D+D +I P + KG L S + K KL K F
Sbjct: 344 DVDFLITSPGSTDEDEEQLLPKVINLWERKGLLLYCDLVESTFEKLKLPSRKVDALDHFQ 403
Query: 417 REDLIFSTHSEEV----------------------YPRDIYAFGLIAWTGNDVLNRRLRL 454
+ LI H + V P + AF L+ WTG+ R
Sbjct: 404 KCFLILKLHHQRVDGGKCSQQEGKTWKAIRVDLVMCPYERRAFALLGWTGSRFERDLRRY 463
Query: 455 LAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+ + LD+ L+ T + LK ++E+E+F LG ++EP ERN
Sbjct: 464 ASHERKMILDNHALYDKT----------KKIFLKAESEEEIFAHLGLDYIEPWERN 509
>gi|63054852|ref|NP_001017520.1| DNA nucleotidylexotransferase isoform 2 [Homo sapiens]
Length = 508
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 93/355 (26%), Positives = 156/355 (43%), Gaps = 66/355 (18%)
Query: 212 NITEIFGKLINIYRALGEDRR----SFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N +IF +I E R ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NCNQIFTDAFDILAENCEFRENEDSCVTFMRAASVLKSLPFTIISMKDTEGIPCLGSKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++++ S
Sbjct: 223 GIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSDKS 282
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 283 LKFTRMQKAGFLYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKMGH 342
Query: 386 DLDVVIMHPDRKSHKGFLSKYVKKLKEMK--FLREDLIFST---------------HSEE 428
D+D +I P + L + V L E K L DL+ ST H ++
Sbjct: 343 DVDFLITSPGSTEDEEQLLQKVMNLWEKKGLLLYYDLVESTFEKLRLPSRKVDALDHFQK 402
Query: 429 VY---------------------------------PRDIYAFGLIAWTGNDVLNRRLRLL 455
+ P + AF L+ WTG+ R
Sbjct: 403 CFLIFKLPRQRVDSDQSSWQEGKTWKAIRVDLVLCPYERRAFALLGWTGSRFERDLRRYA 462
Query: 456 AESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+ LD+ L+ T R LK ++E+E+F LG ++EP ERN
Sbjct: 463 THERKMILDNHALYDKT----------KRIFLKAESEEEIFAHLGLDYIEPWERN 507
>gi|451850321|gb|EMD63623.1| hypothetical protein COCSADRAFT_37397 [Cochliobolus sativus ND90Pr]
Length = 706
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 110/210 (52%), Gaps = 5/210 (2%)
Query: 219 KLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTG 277
K I R L ED +Y I I P+K+ ++ LPG + E TG
Sbjct: 348 KKIRTNRVLIEDEIGVRAYSTIIAAIAAYPYKLSHPREIAQLPGCDEKTAVLFVEWKNTG 407
Query: 278 KLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRT-LDDL--KNEDSLTHSQRL 334
K+ ++E +E DE ++ + F ++WG+G TA+ Y H T LDD+ + L Q++
Sbjct: 408 KIKEVEDYENDEAMKVLRTFYDIWGVGAKTARHFYYDNHWTELDDIIEHGWNDLDRVQQI 467
Query: 335 GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI-ILCGGSYRRGKASCGDLDVVIMH 393
G KY+++ + I R EVE + +++ ++ E I + G YRRGK+ GD+D+++ H
Sbjct: 468 GAKYYEEFQEPIQRAEVEHIVAVVRDHAAKLRDERISVTIVGGYRRGKSVSGDVDIIVSH 527
Query: 394 PDRKSHKGFLSKYVKKLKEMKFLREDLIFS 423
P+ +S G + + V+ L++ +++ L S
Sbjct: 528 PELESTAGLVQEIVESLEDAQWITHTLTMS 557
>gi|401416298|ref|XP_003872644.1| mitochondrial DNA polymerase beta [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322488868|emb|CBZ24118.1| mitochondrial DNA polymerase beta [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 376
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 100/367 (27%), Positives = 166/367 (45%), Gaps = 65/367 (17%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIE-KLPFKIESADQVKGLPGIGKSM 266
D +NI IF ++ ++ ALGE + SY+++I ++ L + + +K G G +
Sbjct: 10 DHRENIIRIFQEMADLNNALGEKYKVSSYHRSIESLKTNLDKPLNTPQDLKAFSGFGAKL 69
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNE 325
+EI+ TGKL +LE K K++ I +V G GP A L+++ G T+D+L +
Sbjct: 70 LKKAEEIMATGKLEELESKTKP-KLKAIQELTQVHGFGPRAAAALFDREGIFTVDELLQK 128
Query: 326 ----DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVL-PEVIILCGGSYRRG 380
SLT QR+G+KYF DI +IP E E L++ EVL + IL GSYRR
Sbjct: 129 ADSIPSLTDQQRVGIKYFYDINEKIPMQESVLHENYLREKCMEVLGKDFSILICGSYRRR 188
Query: 381 KASCGDLDVVIMH-------PDRKSHKGFLSKYVKKLKEMKFLREDLI------------ 421
GD+D ++ + + G L +V+ L+ +K+L +
Sbjct: 189 HPFSGDVDAILSRTLDAPPLSEPVAATGVLGHFVEFLEGIKYLEATMAQGPLKYMGMGRL 248
Query: 422 --------FSTHSEEVYPR---DIYAF-------GLIAWTGNDVLNRRLRLLAESKGYRL 463
+ +VY DI ++ +TG+ N +R A SKGY L
Sbjct: 249 PPRIVRDKAGRENTKVYKARRVDIRLIETKSVPTAMLTFTGSKNFNVIMRQAAISKGYLL 308
Query: 464 DDTGLFPATYGSGGKQ-----GVRARTS---------------LKFDTEKEVFDFLGFPW 503
++ GLF ++ G+R + + ++ +E++VFD LG P+
Sbjct: 309 NEYGLFKLGTPEEARELYERIGIRGKNAGEELGVPKDELEDKRVEVRSEQDVFDVLGMPY 368
Query: 504 LEPHERN 510
+P R+
Sbjct: 369 AKPENRD 375
>gi|62898195|dbj|BAD97037.1| deoxynucleotidyltransferase, terminal variant [Homo sapiens]
Length = 509
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 95/356 (26%), Positives = 155/356 (43%), Gaps = 67/356 (18%)
Query: 212 NITEIFGKLINIYRALGEDRR----SFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N +IF +I E R ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NCNQIFTDAFDILAENCEFRENEDSCVTFMRAASVLKSLPFTIISMKDTEGIPCLGSKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++++ S
Sbjct: 223 GIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSDKS 282
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D + + R E E + L+++A LP+ + G +RRGK
Sbjct: 283 LKFTRMQKAGFLYYEDPVSCVTRAEAEAVSVLVKEAVWAFLPDAFVAMTGGFRRGKKMGH 342
Query: 386 DLDVVIMHPDRKSHKGFLSKYVKKLKEMK----------------------------FLR 417
D+D +I P + L + V L E K F +
Sbjct: 343 DVDFLITSPGSTEDEEQLLQKVMNLWEKKGLLLYYDLVESAFEKLRMPSRKVDALDHFQK 402
Query: 418 EDLIFSTHSEEV----------------------YPRDIYAFGLIAWTGNDVLNRRLRLL 455
LIF + V P + AF L+ WTG+ R LR
Sbjct: 403 CFLIFKLPRQRVDSDQSSWQEGKTWKAIRVDLVLCPYERRAFALLGWTGSRQFERDLRRY 462
Query: 456 A-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
A + LD+ L+ T R LK ++E+E+F LG ++EP ERN
Sbjct: 463 ATHERKMILDNHALYDKT----------KRIFLKAESEEEIFAHLGLDYIEPWERN 508
>gi|353237319|emb|CCA69295.1| hypothetical protein PIIN_03194 [Piriformospora indica DSM 11827]
Length = 400
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 99/364 (27%), Positives = 158/364 (43%), Gaps = 64/364 (17%)
Query: 205 NPPDLNKNITEIFGKLINIY--RALGEDRRSF---SYYKAIPVIEKLPFKIESADQVKGL 259
NP D+N + +L N Y A+G +R + ++ +A+ I +I+S + V L
Sbjct: 35 NPDDVN---YPLLNRLYNEYLEYAVGPERNVYKLKAFSQAMKAIASKSSRIQSLEDVAEL 91
Query: 260 PGIGKSMQDHIQEIVTT------GKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313
PGIG ++ I+E + + ++ + + E + +F + GIGP A+ L E
Sbjct: 92 PGIGTGIRRRIEEYLLSEAEGGSNDITSKKSANQKEMLEACKVFQRISGIGPKKARVLAE 151
Query: 314 KGHRTLDDLKNE----DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEV 369
+G R+LDDL N+ + L + + GL+Y I RI R +++ + + KA LPE
Sbjct: 152 QGFRSLDDLLNDKKTFERLPKAIQTGLRYNSKIDQRIQRDQIDTLSTRIIKA----LPEF 207
Query: 370 IILCGGSYRRGKASCGDLDVVIMHP-----------------DRKSHK--GFLSKYVKKL 410
+ GSYRRG S D+D+++ HP K+ K L V L
Sbjct: 208 EVYVTGSYRRGAPSSSDIDILLFHPSMVEARLRSVKAPTKAQSEKAMKESALLKSAVPAL 267
Query: 411 KEMKFLREDLIFSTHSEE------------------VYPRDIYAFGLIAWTGNDVLNRRL 452
+ K L E L + + P L+ TG+ N+ L
Sbjct: 268 VKAKILGEPLTVGPAKWQGLANLPGTEGRLGRIDLNLMPLQSRGAALVGHTGDADFNQYL 327
Query: 453 RLLAESKGYRLDDTGLF--PATYGSGGKQGVRARTSLKF---DTEKEVFDFLGFPWLEPH 507
R A RL+D GL+ P + K + + +TEK+VFD LG W+EP
Sbjct: 328 RNKALKMLMRLNDYGLWKRPELWRMNEKTDTKDDDEWELVPTETEKDVFDALGEGWVEPE 387
Query: 508 ERNL 511
+RN
Sbjct: 388 KRNF 391
>gi|320170152|gb|EFW47051.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 794
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 104/213 (48%), Gaps = 6/213 (2%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
+LN ++ L Y+ G+D R ++ +A+ + PF+I S D+ LP I +
Sbjct: 297 ELNASVAAPLSALAEFYKTSGDDIRYLAFRRAVASLRACPFRIRSVDEALRLPFISGKIA 356
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I E + G + + + RT+ LF + G+G A YE G+RTL DL +
Sbjct: 357 LLIGEQLRHGHVKRHLELCNGKLGRTLQLFTRILGVGSKLALMWYESGYRTLQDLSSRPP 416
Query: 328 ----LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKAS 383
HS LGL+ ++DI +IPR EVE+ L ++ V P +++ G +RRGK++
Sbjct: 417 RGWRALHS--LGLELYNDITQQIPRAEVEEFGELFRQHAARVDPNLVMTFSGGFRRGKST 474
Query: 384 CGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFL 416
D+D++I H L V+ L+E +
Sbjct: 475 VSDVDILITHETEGLQNNKLFAIVQSLEEAGII 507
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Query: 431 PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFD 490
P + F L+ WTG D+ R +R A KGY L + GL T A
Sbjct: 724 PLHDFPFTLLGWTGTDIFERSIREWATRKGYHLSNHGLEHRT----------ANVFTPCA 773
Query: 491 TEKEVFDFLGFPWLEPHERNL 511
TEK+VFD LG + P ERN
Sbjct: 774 TEKDVFDALGLEYRHPTERNC 794
>gi|181649|gb|AAA53100.1| terminal DONT [Homo sapiens]
Length = 510
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 96/357 (26%), Positives = 159/357 (44%), Gaps = 68/357 (19%)
Query: 212 NITEIFGKLINIYRALGEDRR----SFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N +IF +I E R ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NCNQIFTDAFDILAENCEFRENEDSCVTFMRAASVLKSLPFTIISMKDTEGIPCLGSKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++++ S
Sbjct: 223 GIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSDKS 282
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 283 LKFTRMQKAGFLYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKMGH 342
Query: 386 DLDVVIMHPDRKSHKGFLSKYVKKLKEMK--FLREDLIFST---------------HSEE 428
D+D +I P + L + V L E K L DL+ ST H ++
Sbjct: 343 DVDFLITSPGSTEDEEQLLQKVMNLWEKKGLLLYYDLVESTFEKLRLPSRKVDALDHFQK 402
Query: 429 VY---------------------------------PRDIYAFGLIAWTGND-VLNRRLRL 454
+ P + AF L+ WTG+ R LR
Sbjct: 403 CFLIFKLPRQRVDSDQSSWQEGKTWKAIRVDLVLCPYERRAFALLGWTGSPRQFERDLRR 462
Query: 455 LA-ESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
A + LD+ L+ T R LK ++E+E+F LG ++EP ERN
Sbjct: 463 YATHERKMILDNHALYDKT----------KRIFLKAESEEEIFAHLGLDYIEPWERN 509
>gi|310831448|ref|YP_003970091.1| putative family X DNA polymerase [Cafeteria roenbergensis virus
BV-PW1]
gi|309386632|gb|ADO67492.1| putative family X DNA polymerase [Cafeteria roenbergensis virus
BV-PW1]
Length = 350
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 94/361 (26%), Positives = 168/361 (46%), Gaps = 71/361 (19%)
Query: 209 LNKNITEIFGKLIN---------IYRALGEDRRSFSYY-----KAIPVIEKLP--FKIES 252
+N N+ F KL++ I L +++R S+ + + +I+K P I +
Sbjct: 1 MNSNVISQFEKLVSKNQQDLDNAIKNKLTDEQRKQSFKLRTNKRVLSIIKKYPEELTINN 60
Query: 253 ADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFE--KDEKVRTISLFGEVWGIGPATAQK 310
++ L GIGK +Q I G + +L+ + K+ K I EV IG +TA++
Sbjct: 61 YKELGDLNGIGKGTITKLQNIFEKGYIDELKGYTAPKNNKEDIIKNLEEVINIGRSTAKE 120
Query: 311 LYEKGHRTLDDLK---NEDSLTHSQR--LGLKYFDDIKTRIPRHEVEQMERLLQK----- 360
L E G +++DDLK N + + + LGLKY+ I+ RIPR+ + ++ ++
Sbjct: 121 LVESGVKSVDDLKKKVNTKKIEVNSKILLGLKYYQKIQERIPRNHITEINEFIKNRINFL 180
Query: 361 -AGEEVLPE---VIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEM--- 413
E++ E + +CG SYRR K + GD+D++I + +L +++ K+ +M
Sbjct: 181 NKKEKLTAENKYIFKICG-SYRRNKPTSGDIDILITQKNTSKTSKYLDEHLPKIIQMFKQ 239
Query: 414 --------KFLREDLI---------FSTHSEEVYPR--------DIYAFGLIAWTGNDVL 448
FL ++L F+ + R D + L+ +TG+D
Sbjct: 240 PWKGNNFKPFLIDNLTDITPTKYMGFAQFKNNLPFRIDIRFVSYDSFYTALLYFTGSDEF 299
Query: 449 NRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHE 508
N+ +R +A+ KGY+L + GLF + ++ + +E+ VF L +LEPH
Sbjct: 300 NKVMRNIAKDKGYKLSEYGLFK----------IDSKNQVPIKSEEHVFKILNMDYLEPHL 349
Query: 509 R 509
R
Sbjct: 350 R 350
>gi|149040157|gb|EDL94195.1| deoxynucleotidyltransferase, terminal [Rattus norvegicus]
Length = 500
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 104/188 (55%), Gaps = 2/188 (1%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N+ T+ F L Y + + +A V++ L F I S ++G+P +G ++
Sbjct: 165 NQLFTDAFDILAENYEFRENEVSCLPFMRAASVLKSLSFPIVSMKDIEGIPCLGDKVKCV 224
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL- 328
I+ I+ G+ S+++ DE+ ++ LF V+G+G TA+K + G RTL +K++ SL
Sbjct: 225 IEGIIEDGESSEVKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIKSDKSLR 284
Query: 329 -THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 387
TH Q+ G Y++D+ + + R E E + L+++A LP+ ++ G +RRGK + D+
Sbjct: 285 FTHMQKAGFLYYEDLVSCVNRAEAEAVSMLVKEAVVAFLPDALVTMTGGFRRGKMTGHDV 344
Query: 388 DVVIMHPD 395
D +I P+
Sbjct: 345 DFLITSPE 352
>gi|426252859|ref|XP_004020120.1| PREDICTED: DNA nucleotidylexotransferase [Ovis aries]
Length = 512
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/329 (26%), Positives = 150/329 (45%), Gaps = 63/329 (19%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
++ +A V++ LPF I S +G+P +G ++ I+EI+ G+ S+++ DE+ ++
Sbjct: 193 TFMRAASVLKSLPFTIISMRDTEGIPCLGDKVKCIIEEIIEDGESSEVKAVLNDERYQSF 252
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL--THSQRLGLKYFDDIKTRIPRHEVE 352
LF V+G+G T++K + G R+L+ + ++ +L T Q+ G Y++D+ + + R E E
Sbjct: 253 KLFTSVFGVGLKTSEKWFRMGFRSLNKIMSDKTLKFTKMQKAGFLYYEDLVSCVTRAEAE 312
Query: 353 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKE 412
+ L+++A LP+ + G +RRGK D+D +I P + L V E
Sbjct: 313 AVGVLVKEAVWAFLPDAFVTMTGGFRRGKKIGHDVDFLITSPGSAEDEEQLLPKVINFWE 372
Query: 413 MK--FLREDLIFST---------------HSEEVY------------------------- 430
K L DL+ ST H ++ +
Sbjct: 373 KKGLLLYYDLVESTFEKFKLPSRQVDTLDHFQKCFLILKLHHQRVDSGKSNQQEGKTWKA 432
Query: 431 --------PRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQGV 481
P + +AF L+ WTG+ R +R A + LD+ L+ T
Sbjct: 433 IRVDLVMCPYENHAFALLGWTGSRQFERDIRRYATHERKMMLDNHALYDKT--------- 483
Query: 482 RARTSLKFDTEKEVFDFLGFPWLEPHERN 510
R LK ++E+E+F LG ++EP ERN
Sbjct: 484 -KRMFLKAESEEEIFAHLGLDYIEPWERN 511
>gi|396479682|ref|XP_003840813.1| similar to terminal deoxynucleotidyl transferase [Leptosphaeria
maculans JN3]
gi|312217386|emb|CBX97334.1| similar to terminal deoxynucleotidyl transferase [Leptosphaeria
maculans JN3]
Length = 706
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 99/196 (50%), Gaps = 10/196 (5%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
+Y I I P+K+ +V LPG + E TGK+ ++ +E DE ++ +
Sbjct: 365 AYSTIIASIAAYPYKLRHPREVAQLPGCDEKTAVLFVEWKNTGKIQAVQDYEDDEAMKVL 424
Query: 295 SLFGEVWGIGPATAQKLYEKGHRT-LDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEV 351
LF +WG+G TA+ Y H T LDD+ D L Q++G+KY D+ IPR EV
Sbjct: 425 RLFYNIWGVGAKTARHFYYNNHWTELDDIIEYGWDDLDRVQQIGVKYCDEFLVPIPRPEV 484
Query: 352 EQMERLLQKAGEEVL----PEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYV 407
EQ+ +++ E V+ + G YRRGK+ GD+D+++ HP+ G + + V
Sbjct: 485 EQIASVVK---EHVVRLRDDRATVTIVGGYRRGKSESGDVDMIVSHPELDQTAGLIREIV 541
Query: 408 KKLKEMKFLREDLIFS 423
L++ ++ L S
Sbjct: 542 DSLEDTGWITHTLTMS 557
>gi|384244518|gb|EIE18020.1| hypothetical protein COCSUDRAFT_60646 [Coccomyxa subellipsoidea
C-169]
Length = 702
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 118/256 (46%), Gaps = 51/256 (19%)
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKD-EKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL 322
K++ + +VT KL EK EK++ I F EVWG G ATA++ Y G R+L+D+
Sbjct: 259 KAVVESTSALVTADDCEKLGIGEKSIEKLQEI--FMEVWGTGEATAERWYRDGCRSLEDV 316
Query: 323 KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEV-----LPEV-IILCG-- 374
+ L+ QR G+KYF+D K RIPR EV M + A EEV LP+ ++ C
Sbjct: 317 QGRSDLSMQQRTGMKYFEDFKQRIPRSEVAAMGATVCDAAEEVLDCSNLPDGDLLFCSVL 376
Query: 375 GSYRRGKASCGDLDVVIMHPDRKSH---KGFLSKYVKKLKEMKFLREDLIFSTHSE---- 427
GSY RGK GD+D++I P + L K L++ L +D+ + +
Sbjct: 377 GSYTRGKPLTGDVDMLIAPPPSCGEIDSRQALHAICKCLQKRGLLLDDMASTAPAARGDG 436
Query: 428 ---------------------EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK------- 459
+ YPR + F ++ +TG+ +R LR A S+
Sbjct: 437 AATFMGVARHATSPCARRVDIKFYPRRVLPFAIMHFTGSGAFSRALRYWARSRANEARRF 496
Query: 460 -----GYRLDDTGLFP 470
G++L D L P
Sbjct: 497 QPSANGFKLSDYALVP 512
>gi|146291077|sp|P06526.2|TDT_BOVIN RecName: Full=DNA nucleotidylexotransferase; AltName: Full=Terminal
addition enzyme; AltName: Full=Terminal
deoxynucleotidyltransferase; Short=TDT; Short=Terminal
transferase
gi|133777939|gb|AAI14821.1| DNTT protein [Bos taurus]
Length = 509
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 87/329 (26%), Positives = 149/329 (45%), Gaps = 63/329 (19%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
++ +A V++ LPF I S +G+P +G ++ I+EI+ G+ S+++ DE+ ++
Sbjct: 190 TFMRAASVLKSLPFTIISMKDTEGIPCLGDKVKCIIEEIIEDGESSEVKAVLNDERYQSF 249
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL--THSQRLGLKYFDDIKTRIPRHEVE 352
LF V+G+G T++K + G R+L + ++ +L T Q+ G Y++D+ + + R E E
Sbjct: 250 KLFTSVFGVGLKTSEKWFRMGFRSLSKIMSDKTLKFTKMQKAGFLYYEDLVSCVTRAEAE 309
Query: 353 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKE 412
+ L+++A LP+ + G +RRGK D+D +I P + L V L E
Sbjct: 310 AVGVLVKEAVWAFLPDAFVTMTGGFRRGKKIGHDVDFLITSPGSAEDEEQLLPKVINLWE 369
Query: 413 MK--FLREDLIFST---------------HSEEVY------------------------- 430
K L DL+ ST H ++ +
Sbjct: 370 KKGLLLYYDLVESTFEKFKLPSRQVDTLDHFQKCFLILKLHHQRVDSSKSNQQEGKTWKA 429
Query: 431 --------PRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQGV 481
P + AF L+ WTG+ R +R A + LD+ L+ T
Sbjct: 430 IRVDLVMCPYENRAFALLGWTGSRQFERDIRRYATHERKMMLDNHALYDKT--------- 480
Query: 482 RARTSLKFDTEKEVFDFLGFPWLEPHERN 510
R LK ++E+E+F LG ++EP ERN
Sbjct: 481 -KRVFLKAESEEEIFAHLGLDYIEPWERN 508
>gi|29135289|ref|NP_803461.1| DNA nucleotidylexotransferase [Bos taurus]
gi|768|emb|CAA27734.1| unnamed protein product [Bos taurus]
gi|296472648|tpg|DAA14763.1| TPA: terminal deoxynucleotidyltransferase [Bos taurus]
Length = 520
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 87/329 (26%), Positives = 149/329 (45%), Gaps = 63/329 (19%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
++ +A V++ LPF I S +G+P +G ++ I+EI+ G+ S+++ DE+ ++
Sbjct: 201 TFMRAASVLKSLPFTIISMKDTEGIPCLGDKVKCIIEEIIEDGESSEVKAVLNDERYQSF 260
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL--THSQRLGLKYFDDIKTRIPRHEVE 352
LF V+G+G T++K + G R+L + ++ +L T Q+ G Y++D+ + + R E E
Sbjct: 261 KLFTSVFGVGLKTSEKWFRMGFRSLSKIMSDKTLKFTKMQKAGFLYYEDLVSCVTRAEAE 320
Query: 353 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKE 412
+ L+++A LP+ + G +RRGK D+D +I P + L V L E
Sbjct: 321 AVGVLVKEAVWAFLPDAFVTMTGGFRRGKKIGHDVDFLITSPGSAEDEEQLLPKVINLWE 380
Query: 413 MK--FLREDLIFST---------------HSEEVY------------------------- 430
K L DL+ ST H ++ +
Sbjct: 381 KKGLLLYYDLVESTFEKFKLPSRQVDTLDHFQKCFLILKLHHQRVDSSKSNQQEGKTWKA 440
Query: 431 --------PRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQGV 481
P + AF L+ WTG+ R +R A + LD+ L+ T
Sbjct: 441 IRVDLVMCPYENRAFALLGWTGSRQFERDIRRYATHERKMMLDNHALYDKT--------- 491
Query: 482 RARTSLKFDTEKEVFDFLGFPWLEPHERN 510
R LK ++E+E+F LG ++EP ERN
Sbjct: 492 -KRVFLKAESEEEIFAHLGLDYIEPWERN 519
>gi|307110952|gb|EFN59187.1| hypothetical protein CHLNCDRAFT_138091 [Chlorella variabilis]
Length = 587
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 111/240 (46%), Gaps = 34/240 (14%)
Query: 250 IESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQ 309
+ES + V +PG+G + ++EI+ G S++ DE+ + ++ EVWG G A+A
Sbjct: 295 LESEEDVDKVPGLGPKSKVKVKEILAKGTSSRIAAAAADEQRKVLTTLLEVWGTGTASAS 354
Query: 310 KLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVL- 366
+ Y G RTLD+L++ +LT QR+GLKY+DD+K +IPR EV Q E+++++ E++
Sbjct: 355 RWYSLGVRTLDNLRSRTDLNLTEQQRVGLKYYDDLKQKIPRAEVAQTEKIVRETCFELIE 414
Query: 367 --------PEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLRE 418
GSY RGK D+D++I P SH
Sbjct: 415 RWGGTADVERTYCSATGSYLRGKPQSSDVDILICLPPSLSHADC---------------H 459
Query: 419 DLIFSTHSEEVYPRDIYAFG--------LIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 470
D + ++ P + FG W V + A + G+++ D + P
Sbjct: 460 DFLTEVYASSTTPFALNYFGNSQSFCRATRYWANTGVAEAARKYNAAANGFKISDRDMVP 519
>gi|431838953|gb|ELK00882.1| DNA nucleotidylexotransferase [Pteropus alecto]
Length = 464
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 137/285 (48%), Gaps = 31/285 (10%)
Query: 212 NITEIFGKLINIYRALGEDRRSFSYY----KAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N +F + E R + +Y +A V++ LPF I S +G+P +G +
Sbjct: 144 NCNHVFTDAFEVLAENCEFRENEVFYLVFMRAASVLKSLPFTITSMKDTEGIPCLGDKAK 203
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G R+L ++++ +
Sbjct: 204 YIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRSLSKIRSDKT 263
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y+DD+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 264 LKFTQMQKAGFLYYDDLVSCVTRAEAEAVSVLVKEAVSAFLPDASVTVTGGFRRGKKIGH 323
Query: 386 DLDVVIMHP--DRKSHKGFLSKYV---------------KKLKEMKFLREDLIFSTHSEE 428
D+D +I P + + L K + ++ K K +R DL+
Sbjct: 324 DVDFLISSPGSTEEDEQQLLPKVMNLWERKRVESDNSSQQEGKTWKAIRVDLV------- 376
Query: 429 VYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPAT 472
V P + +AF L+ WTG+ R LR A + LD+ L+ T
Sbjct: 377 VCPYECHAFALLGWTGSRQFERDLRRYATHERKMILDNHALYDKT 421
>gi|440903527|gb|ELR54173.1| DNA nucleotidylexotransferase, partial [Bos grunniens mutus]
Length = 517
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 87/329 (26%), Positives = 149/329 (45%), Gaps = 63/329 (19%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
++ +A V++ LPF I S +G+P +G ++ I+EI+ G+ S+++ DE+ ++
Sbjct: 198 TFMRAASVLKSLPFTIISMKDTEGIPCLGDKVKCIIEEIIEDGESSEVKAVLNDEQYQSF 257
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL--THSQRLGLKYFDDIKTRIPRHEVE 352
LF V+G+G T++K + G R+L + ++ +L T Q+ G Y++D+ + + R E E
Sbjct: 258 KLFTSVFGVGLKTSEKWFRMGFRSLSKIMSDKTLKFTKMQKAGFLYYEDLVSCVTRAEAE 317
Query: 353 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKE 412
+ L+++A LP+ + G +RRGK D+D +I P + L V L E
Sbjct: 318 AVGVLVKEAVWAFLPDAFVTMTGGFRRGKKIGHDVDFLITSPGSAEDEEQLLPKVINLWE 377
Query: 413 MK--FLREDLIFST---------------HSEEVY------------------------- 430
K L DL+ ST H ++ +
Sbjct: 378 KKGLLLYYDLVESTFEKFKLPSRQVDTLDHFQKCFLILKLHHQRVDSSKSNQQEGKTWKA 437
Query: 431 --------PRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQGV 481
P + AF L+ WTG+ R +R A + LD+ L+ T
Sbjct: 438 IRVDLVMCPYENRAFALLGWTGSRQFERDIRRYATHERKMMLDNHALYDKT--------- 488
Query: 482 RARTSLKFDTEKEVFDFLGFPWLEPHERN 510
R LK ++E+E+F LG ++EP ERN
Sbjct: 489 -KRVFLKAESEEEIFAHLGLDYIEPWERN 516
>gi|238577375|ref|XP_002388369.1| hypothetical protein MPER_12617 [Moniliophthora perniciosa FA553]
gi|215449591|gb|EEB89299.1| hypothetical protein MPER_12617 [Moniliophthora perniciosa FA553]
Length = 372
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 90/349 (25%), Positives = 138/349 (39%), Gaps = 82/349 (23%)
Query: 214 TEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEI 273
T+ F +NI++ ++R S A P P E+ D V LP +G I+E
Sbjct: 1 TQRFAVGLNIFK----NKRVLSGRIAYPK----PITSENVDDVAKLPFVGDKALFKIKEY 52
Query: 274 VTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL----------- 322
+ TG +S+ + ++ ++++ F + GIG TA+KLY RTL DL
Sbjct: 53 LHTGHISEAQTILASQRYQSLTAFTSIHGIGSITARKLYSMNLRTLQDLDVYYDVYSPSI 112
Query: 323 KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA 382
LT L L+ +D+ +IPR EVE M + +E+ + G YRRGK
Sbjct: 113 STCKDLTIQVALALR--NDLSQKIPREEVEAMRDTVMNELDEIKKGCVCTITGGYRRGKQ 170
Query: 383 SCGDLDVVIMHPD----------------------------------------RKSHKGF 402
D+D+V HPD R SH
Sbjct: 171 ESNDVDIVFTHPDLASEKGEVKVLAEKLIKRLYDKDLITHVTHLSSFRDPKKLRTSHLNL 230
Query: 403 LSKYVKKLKEMKFLREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGY 461
+ K + ++ K R DLIF+ + Y ++ WTG+ + R LRL A + +G
Sbjct: 231 VEKALTVFRQEKSRRLDLIFTAP-------EAYWCAVVGWTGSKLFERDLRLWAKQERGM 283
Query: 462 RLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+ D K R + +VF F G W++P RN
Sbjct: 284 KFD-------------KPAYTIRNTFFPKANMKVFRFWGLEWIDPEWRN 319
>gi|358059285|dbj|GAA94973.1| hypothetical protein E5Q_01628 [Mixia osmundae IAM 14324]
Length = 441
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 109/207 (52%), Gaps = 8/207 (3%)
Query: 225 RALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEH 284
R G R + SY AI ++ P ++S + + G G + I E + TG L++ +
Sbjct: 167 RLTGNARSALSYAVAIAALKAYPHMLQSGQEADTIVGTGPKIGALIDEYLRTGTLAEADR 226
Query: 285 FEKDEKVRTISLF-GEVWGIGPATAQKLYEKGHR-TLDDLKN---EDSLTHSQRLGLKYF 339
E+ + + LF V GIGP TA+ L ++ H T DD++ ED + ++ L Y
Sbjct: 227 LERQSRFLALRLFTSSVHGIGPTTARTLVDRFHCLTWDDVERTMREDP--EAPQISLDYR 284
Query: 340 DDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSH 399
D+I +IPR EVE++ L++ +++ P + + G YRRGK D+D++I HP H
Sbjct: 285 DEIAQKIPRSEVEKIHDLVKLQLDKLQPGCLTMLTGGYRRGKPFSNDIDILITHPHDTVH 344
Query: 400 KGFLSKYVKKLKEMKFLREDLIFSTHS 426
G LSK V +L+ ++E L ++ +
Sbjct: 345 -GLLSKLVNRLQHKSLIKEILYYTNQN 370
>gi|219127150|ref|XP_002183804.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404527|gb|EEC44473.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 570
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 83/338 (24%), Positives = 146/338 (43%), Gaps = 68/338 (20%)
Query: 232 RSFSYYKAIPVIEKLPFKIESADQV----KGLPGIGKSMQDHIQEIVTTGKLSKLEHFEK 287
+S+S+ + L F+I + +V + G G S D I + + T + S+L + E
Sbjct: 163 KSYSFQITAGRLLHLGFEIRDSPEVLRHLASINGFGSSTMDIITDYLRTQQCSRLRNLES 222
Query: 288 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTH-----SQRLGLKYFDDI 342
D + +WG+G A++L + G + +++++ L + +Q +G+ +DD+
Sbjct: 223 DPDRVAMKNMMNIWGVGRVRAKELVDAGFKRINEVRQAVELGNLQLERNQYIGVLCYDDL 282
Query: 343 KTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSH--K 400
++ R EVE + +++ + PE + GSYRRGK +CGD+D++I H D
Sbjct: 283 LEKMDRTEVESIGKIISNIFKMSYPEAEVCVMGSYRRGKHACGDVDILITHEDYNHTVPP 342
Query: 401 GFLSKYVKKLKEMKFLREDLIFSTHSE--------------------------------- 427
L +++ +L++ + L F + +
Sbjct: 343 KALGQFIDELRQQGHIAYHLTFISGMKHELYETIPDAPSHWSPQRDKRDKSSSSSYMGVF 402
Query: 428 --------------EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK-GYRLDDTGLFPAT 472
+ YP AF + +TGN NR +RL A K Y L+D G+F
Sbjct: 403 KSPCMTGKKRRVDIKFYPWREKAFASLYFTGNGYFNRSMRLWATRKFNYTLNDHGVF--- 459
Query: 473 YGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+G R L +EKE+F+FL W EP ER+
Sbjct: 460 -----DRGSLVRV-LDTTSEKEIFEFLDISWREPKERD 491
>gi|342181097|emb|CCC90575.1| putative mitochondrial DNA polymerase beta [Trypanosoma congolense
IL3000]
Length = 408
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 103/398 (25%), Positives = 170/398 (42%), Gaps = 97/398 (24%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEK-LPFKIESADQVKGLPGIGKSM 266
D +NI IF ++ ++ ALGE + SY +A+ ++ L + + + ++ PG G +
Sbjct: 12 DNRENIIRIFSEMADLNNALGEKYKVQSYNRAVRSLKTHLDLPLRTVEDLEKFPGFGSKL 71
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDL--- 322
+EI+TTGKL +LE K K++ I +V G GP A L+++ G T+++L
Sbjct: 72 LKKAEEIITTGKLEELEKKTKP-KLKAIQELTQVHGFGPRAAATLFDREGIFTVEELIEK 130
Query: 323 KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE--VIILCGGSYRRG 380
++ LT QR+G++YF DI +IP HE E L++ L I +C GSYRR
Sbjct: 131 ADQIQLTEQQRVGVRYFHDINEKIPMHESVLHENFLRECALRRLGSDYEIQIC-GSYRRR 189
Query: 381 KASCGDLDVVIMHPDRK-------SHKGFLSKYVKKLKEMKFLREDLIF----------- 422
GD+D ++ + + G L+ V+ L+E ++L +
Sbjct: 190 HPFSGDIDAILARSLKAPPLDAPVTTTGVLTVLVEYLQEQRYLEATMALGPLKYMGMGRL 249
Query: 423 -------STHSEEVYPRDIYAF-------GLIAWTGNDVLNRRLRLLAESKGYRLDDTGL 468
+T + + DI L+ +TG+ N +R A S+GY L++ GL
Sbjct: 250 PPRTTGNTTKTYKARRVDIRLIESKSVPTALLTFTGSKNFNVIMRQAAISRGYLLNEYGL 309
Query: 469 F-------------------------PA--------TYGSGGKQGVR------ARTSLKF 489
F PA + GS ++G + S K
Sbjct: 310 FKVGTSEEVRALQERVRANKAAGGDRPAGELDDPYSSSGSAAEEGAEPFVSSISGNSAKM 369
Query: 490 DT-----------------EKEVFDFLGFPWLEPHERN 510
+T EK+VFD LG P+ +P R+
Sbjct: 370 ETLGLTKEELEAKRVHVTCEKDVFDVLGMPYAKPENRD 407
>gi|33860211|sp|O57486.2|TDT_AMBME RecName: Full=DNA nucleotidylexotransferase; AltName: Full=Terminal
addition enzyme; AltName: Full=Terminal
deoxynucleotidyltransferase; Short=Terminal transferase
gi|28852989|gb|AAB92673.2| matrice independent polymerase [Ambystoma mexicanum]
Length = 510
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 118/227 (51%), Gaps = 5/227 (2%)
Query: 210 NKN--ITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
NKN T+ F L Y +R S+ +A V++ L F I V GLPG G ++
Sbjct: 159 NKNTLFTDAFEILAENYEFRENERSCLSFRQAASVLKSLTFTIAGMADVDGLPGFGDHIR 218
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I++++ G+ SK+ DE R++ LF ++G+G TA+K + G RTL+++K+ ++
Sbjct: 219 AVIEDLIEDGESSKVSEVLNDEVYRSLKLFTTIFGVGLRTAEKWHRLGIRTLEEIKSNEN 278
Query: 328 LTHS--QRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L S Q GL++++DI + + E + + +++ A LP+ ++ G +RRG +
Sbjct: 279 LKFSKMQIAGLQHYEDILGGVRKAEADAVAMVVRDAVWTFLPDAVVTLTGGFRRGNKTGH 338
Query: 386 DLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIF-STHSEEVYP 431
D+D++I P + K L K + K+ L I ST E+ P
Sbjct: 339 DVDMLITSPIQGKEKELLHKVINLWKKQDLLLCHTIHESTMDEDNLP 385
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 18/98 (18%)
Query: 414 KFLREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPAT 472
K +R DL+F P + YAF L+ WTG+ R LR A K +D+ L+ T
Sbjct: 429 KAIRVDLVFC-------PFEQYAFALLGWTGSRQFERDLRRYASHEKKMMIDNHALYDKT 481
Query: 473 YGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
R +K ++E+E+F LG +++P ERN
Sbjct: 482 ----------KRVFVKCESEEEIFGHLGLEYIDPVERN 509
>gi|340053717|emb|CCC48010.1| putative mitochondrial DNA polymerase beta [Trypanosoma vivax Y486]
Length = 407
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 88/308 (28%), Positives = 142/308 (46%), Gaps = 41/308 (13%)
Query: 201 SLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEK-LPFKIESADQVKGL 259
+ L + PD +NI IF ++ + ALGE + SY +A+ ++ L + + + ++
Sbjct: 5 TFLRSAPDNRENIIRIFMEMAELNNALGEKYKVHSYNRAVRSLKTHLDLPLRTVEDLERF 64
Query: 260 PGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRT 318
PG G + +EI+TTGKL +LE K K+R I ++ G GP A L+++ G T
Sbjct: 65 PGFGAKLVKKAEEIITTGKLEELEKKTKP-KLRAIQELTQIHGFGPRAAASLFDREGIFT 123
Query: 319 LDDL---KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE--VIILC 373
+++L + LT QR+G++YF DI +IP HE E L++ L I +C
Sbjct: 124 VEELIEKADRIQLTDQQRVGVRYFHDINEKIPMHESVLHENFLRECSLRRLGSDYEIQIC 183
Query: 374 GGSYRRGKASCGDLDVVIMHPDRK-------SHKGFLSKYVKKLKEMKFLREDLIF---- 422
GSYRR GD+D ++ + G L+ V+ L E K+L +
Sbjct: 184 -GSYRRRHPFSGDIDAILARTRNAPPLDGPVTTTGVLNVLVEYLLEQKYLEATMALGPLK 242
Query: 423 --------------STHSEEVYPRDIYAF-------GLIAWTGNDVLNRRLRLLAESKGY 461
+T + DI L+ +TG+ N +R A S+GY
Sbjct: 243 YMGMGRLPPRTTGGATKHYKARRVDIRLIETKSVPTALLTFTGSKNFNVIMRQAAISRGY 302
Query: 462 RLDDTGLF 469
L++ GLF
Sbjct: 303 LLNEYGLF 310
>gi|361129501|gb|EHL01407.1| putative DNA polymerase family X C2F7.06c [Glarea lozoyensis 74030]
Length = 357
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 96/169 (56%), Gaps = 4/169 (2%)
Query: 247 PFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPA 306
P + SA ++ LP G QE TG + ++E + DEK + + + ++G+G
Sbjct: 34 PHTLTSALELLKLPHCGSRFAALFQEWKETGMIKEVEDLKYDEKFQAMDVLTGIFGVGDK 93
Query: 307 TAQKLYEKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEE 364
TA++ Y KG+R +DD+ DSLT Q +G K++ D + RIP EVE++ + +
Sbjct: 94 TAREFYAKGYRDIDDIIEYAWDSLTTEQMIGTKFYYDFQQRIPLPEVEKIANHVLSEARK 153
Query: 365 VLPEV-IILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKE 412
V P +++CGG YR+GK CGD+D+V+ + D + F+ +++ LK+
Sbjct: 154 VYPGFEMVICGG-YRKGKPDCGDVDIVLSNRDESATDNFIYEFLLDLKD 201
>gi|40037389|gb|AAR37396.1| terminal deoxynucleotidyl transferase [Raja eglanteria]
Length = 525
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/343 (26%), Positives = 149/343 (43%), Gaps = 61/343 (17%)
Query: 229 EDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEK 287
E+ SF +Y +A V++ LP+ I + ++GLP IG + I+E++ G SK+E
Sbjct: 182 ENAGSFVAYSRATSVLKSLPYPITGMNDLEGLPCIGDQTRVIIEELLEEGVCSKVESLLC 241
Query: 288 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHS--QRLGLKYFDDIKTR 345
DEK + LF V+G+G TA K Y G RTL+++K +T + Q+ G Y++DI
Sbjct: 242 DEKYKARKLFTSVFGVGVKTADKWYGLGFRTLEEIKARKDITFTKMQKAGFLYYEDILQA 301
Query: 346 IPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSK 405
+ + E E + +++ + P+ + G +RRGK D+D++I + + +G L K
Sbjct: 302 VKKSEAEAVIQIIGDIVGQCAPDAKVTLTGGFRRGKEVGHDVDLLITCLEEGNEEGVLHK 361
Query: 406 YVKKL-KEMKFLREDLIFSTHSEEVYPRDIY-------AFGLIAWTGNDVLNRRLRLLAE 457
+ KL + L D++ +T + P Y LI ++N+R LA
Sbjct: 362 AISKLDRHGLLLFCDVVEATMEKRQLPSRKYDAMDHFQKCFLILKLDKRLVNKRDYGLAS 421
Query: 458 SKGYRLDDTG--------------------LFPA---TYGSGGKQGVR------------ 482
RL D + P+ Y G G R
Sbjct: 422 GSAVRLTDKRTEDENKTMIKGWKAIRVDLVIVPSQQFAYALLGWSGSRQFERDLRRYCSQ 481
Query: 483 ---------------ARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+ LK +TE+E+F LG ++EP ERN
Sbjct: 482 EKRMLLDNHGLYDKNTQEFLKAETEEEIFAHLGLEYIEPQERN 524
>gi|407917656|gb|EKG10960.1| BRCT domain-containing protein [Macrophomina phaseolina MS6]
Length = 675
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 119/234 (50%), Gaps = 18/234 (7%)
Query: 205 NPPDLNKNITEIFGKL--INIYRAL-GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPG 261
NPP+ G+L I + R L G++ +Y AI + P+++ ++ LPG
Sbjct: 296 NPPN-----AAFIGQLKEIRLTRTLTGDEVGVRAYSTAIAALAAYPYRLSHPKEILRLPG 350
Query: 262 IGKSMQDHIQEIVTTG---KLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK-LYEKGHR 317
+ + E G + + DE + + +F ++WG+G TA+ L++KG R
Sbjct: 351 CDTKIANLWIEWKNAGDEATIPAVAAARADETLAILRIFYDIWGVGATTARDFLFDKGWR 410
Query: 318 TLDDLKN---EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE--VIIL 372
LDD+ SLT Q++G+KY+DD + IPR EVE++ ++ V E + L
Sbjct: 411 DLDDVVEYGWTSSLTRVQQIGVKYYDDFRHGIPRREVERIATVIHAHAVRVRDEGATVAL 470
Query: 373 CGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHS 426
GG YRRGK + GD+D+++ H D ++ + ++ V L+ ++ L+ S H+
Sbjct: 471 VGG-YRRGKDAPGDVDLIVSHRDLRATENLVTDLVASLEGEGWITHTLLLSLHN 523
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 14/154 (9%)
Query: 362 GEEVLP-EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDL 420
G+ VLP + G G + VV P+ + L++ K R D+
Sbjct: 527 GQSVLPYKAAATAAGPKSVGFDTLDKALVVWQDPEWPGREEDLARDPKATNPNVHRRVDI 586
Query: 421 IFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAES-KGYRLDDTGLFPATYGS---- 475
I S P + W+G R LR A++ KG++ D +G+ G
Sbjct: 587 IIS-------PWRTVGCAIAGWSGGTTFQRDLRRYAKNVKGWKFDSSGVRDRRTGEVVQL 639
Query: 476 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
G +GV + D EK+VF+ +G PW++P +R
Sbjct: 640 EGPEGVGEGLGWE-DAEKKVFEGMGLPWIKPEDR 672
>gi|347841318|emb|CCD55890.1| similar to terminal deoxynucleotidyl transferase [Botryotinia
fuckeliana]
Length = 683
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 87/358 (24%), Positives = 163/358 (45%), Gaps = 39/358 (10%)
Query: 85 VIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIAD-----------RVLSQIQGNGNTSS 133
V++ W DS+R G + D Y I EG + + R + + G+ N
Sbjct: 177 VLKIDWYFDSIREGMLLPIDKYLIY---EGRRVVEPPKFLPSDLLTRAAADLGGSPNPKY 233
Query: 134 DGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFS 193
++ K T F ES T+ + SP E L S +P
Sbjct: 234 GPHYRQQQSRKPLTRPA--FLTES-----TSEHDDPSYSPPVPEYLKTIYSCERPTP--- 283
Query: 194 SHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESA 253
+T P N P +N+ T +L++ G+ +Y +I I P+ + S
Sbjct: 284 ---LTSP----NDPFINQLKTIKLKRLLD-----GDPIGVRAYSTSIASIAAYPYPLHSP 331
Query: 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY- 312
+++ LPG + + + + + + TG ++ FE++ +++ + F +WG+ TA++ +
Sbjct: 332 NELIRLPGCDQKIANLLHQFLNTGTTDEVFDFEQNPRMQVLKTFYNIWGVADITAREFHD 391
Query: 313 EKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 370
++ + LDD+ E + L Q++G+KY++++ T IPR E E + ++ + P
Sbjct: 392 QREWKDLDDIVVEGWNDLKPVQKIGVKYYEELNTPIPRCETEAIGSIILSEARRIDPGFQ 451
Query: 371 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE 428
++ G YRRGK GD+D+++ H D K GFL + +L+E ++ L+ S + E
Sbjct: 452 MVIVGGYRRGKLESGDVDIMLTHRDEKRTLGFLPELTWRLEEQGWITNILLESMKNSE 509
>gi|72389310|ref|XP_844950.1| mitochondrial DNA polymerase beta [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|34014750|gb|AAQ56191.1| DNA polymerase beta [Trypanosoma brucei]
gi|62358911|gb|AAX79362.1| mitochondrial DNA polymerase beta [Trypanosoma brucei]
gi|70801484|gb|AAZ11391.1| mitochondrial DNA polymerase beta [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|261328277|emb|CBH11254.1| mitochondrial DNA polymerase beta [Trypanosoma brucei gambiense
DAL972]
Length = 407
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 86/301 (28%), Positives = 142/301 (47%), Gaps = 41/301 (13%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEK-LPFKIESADQVKGLPGIGKSM 266
D +NI IF ++ ++ ALGE + SY +A+ ++ L + + + ++ PGIG +
Sbjct: 12 DNRENIIRIFTEMADLNNALGEKYKVQSYNRAVRSLKTHLDLPLRTVEDLEKFPGIGSKL 71
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDL--- 322
+EI+ TGKL +LE K K++ I ++ G GP A L+++ G T++DL
Sbjct: 72 LKKAEEIIRTGKLDELEKKTKP-KLKAIQELTQIHGFGPRAAATLFDREGIFTVEDLIEK 130
Query: 323 KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE--VIILCGGSYRRG 380
++ LT QR+G++YF DI +IP HE E L++ L I +C GSYRR
Sbjct: 131 ADQIQLTEQQRVGVRYFHDINEKIPMHESILHENFLRECALRRLGSDYEIQIC-GSYRRR 189
Query: 381 KASCGDLDVVIMHPDRK-------SHKGFLSKYVKKLKEMKFLREDLIF----------- 422
GD+D ++ + G L+ V+ L+E ++L +
Sbjct: 190 HPFSGDIDAILARSLNAPPLDAPVTTTGVLTILVEYLQEQRYLEATMALGPLKYMGMGRL 249
Query: 423 -------STHSEEVYPRDIYAF-------GLIAWTGNDVLNRRLRLLAESKGYRLDDTGL 468
+T + + DI L+ +TG+ N +R A SKGY L++ GL
Sbjct: 250 PPRTTGGATKTYKARRVDIRLIETKSVPTALLTFTGSKNFNVIMRQAAISKGYLLNEYGL 309
Query: 469 F 469
F
Sbjct: 310 F 310
>gi|395501816|ref|XP_003755286.1| PREDICTED: DNA nucleotidylexotransferase [Sarcophilus harrisii]
Length = 517
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 114/225 (50%), Gaps = 14/225 (6%)
Query: 184 STASASPDFSSH--HITDPSLLYNPP----------DLNKNITEIFGKLINIYRALGEDR 231
S ASA+PD + I P++ P + N+ T+ F L Y
Sbjct: 128 SIASANPDPNEGMLKIQSPAMNAISPYACQRRTTLNNHNQRFTDAFEILAKNYEFRENHG 187
Query: 232 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
++ +A V++ LPF I S +GLP IG ++ ++EI+ G+ +++ DE+
Sbjct: 188 HCLTFLRATSVLKCLPFAIVSMKDAEGLPWIGDEVKGIMEEIIEDGQSLEVQAVLNDERY 247
Query: 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL--THSQRLGLKYFDDIKTRIPRH 349
+ LF V+G+G TA+K Y G RTL ++++ SL T Q+ G Y++D+ + + +
Sbjct: 248 QAFKLFTSVFGVGLKTAEKWYRMGFRTLSKIQSDKSLKFTKMQKAGFLYYEDLISCVSKA 307
Query: 350 EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
E + + ++++A LP+ +I G +RRGK D+D +I P
Sbjct: 308 EADAVSLIVKEAVWTFLPDALITITGGFRRGKEFGHDVDFLITSP 352
>gi|33356563|gb|AAA68599.2| DNA polymerase beta [Crithidia fasciculata]
Length = 376
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 164/365 (44%), Gaps = 67/365 (18%)
Query: 211 KNITEIFGKLINIYRALGEDRRSFSYYKAIPVIE-KLPFKIESADQVKGLPGIGKSMQDH 269
+NI IF ++ ++ ALGE + SY ++I ++ L + + +K G G +
Sbjct: 13 ENIIRIFQEMADLNNALGEKYKVSSYLRSIESLKTNLDKPLNTPQDLKAFSGFGAKLLKK 72
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNE--- 325
+EI+ TGKL +LE K K++ I +V G GP A L+++ G T+++L +
Sbjct: 73 AEEIMATGKLEELESKTKP-KLKAIQELTQVHGFGPRAAAALFDREGIFTVEELLQKADS 131
Query: 326 -DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE--VIILCGGSYRRGKA 382
SLT QR+G+KYF DI +IP E E L++ EVL + I +C GSYRR
Sbjct: 132 ISSLTDQQRVGIKYFYDINEKIPMQESVLHENYLREKCLEVLGKDYTIAIC-GSYRRRHP 190
Query: 383 SCGDLDVVIMH-------PDRKSHKGFLSKYVKKLKEMKFLREDLI-------------- 421
GD+D ++ + + G L YV+ L++ +L +
Sbjct: 191 FSGDVDALLSRTHDAPPLSEPVAATGVLGNYVEHLEKTNYLEATMAQGPLKYMGMGRLPP 250
Query: 422 ------FSTHSEEVYPR---DIYAF-------GLIAWTGNDVLNRRLRLLAESKGYRLDD 465
+ +VY DI ++ +TG+ N +R A +KGY L++
Sbjct: 251 RIVRDKAGRENTKVYKARRVDIRLIETKSVPTAMLTFTGSKNFNVIMRQAAIAKGYLLNE 310
Query: 466 TGLF--------PATYGSGGKQGVRARTSL----------KFD--TEKEVFDFLGFPWLE 505
GLF A Y G +G A L + D +E++VFD LG P+ +
Sbjct: 311 YGLFRLGTPEEARALYERVGIKGKNAGEELGVPKEELEDKRVDVRSEQDVFDALGMPYAK 370
Query: 506 PHERN 510
P R+
Sbjct: 371 PENRD 375
>gi|344274915|ref|XP_003409260.1| PREDICTED: DNA nucleotidylexotransferase-like [Loxodonta africana]
Length = 509
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 80/328 (24%), Positives = 143/328 (43%), Gaps = 63/328 (19%)
Query: 236 YYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTIS 295
+ +A V++ LPF I S +G+P + + I++I+ G+ S+++ DE+ ++
Sbjct: 191 FMRAASVLKSLPFTIISMKDTQGIPCLEDKAKCVIEDIIEDGESSEVKAVLNDERYKSFK 250
Query: 296 LFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL--THSQRLGLKYFDDIKTRIPRHEVEQ 353
LF V+G+G T++K + G R+L ++ + +L T Q G Y++D+ + + + E +
Sbjct: 251 LFTSVFGVGLKTSEKWFRMGFRSLSKIRTDKTLKFTEMQEAGFLYYEDLVSCVTKAEADA 310
Query: 354 MERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMH--PDRKSHKGFLSKYVKKL- 410
+ L+++A LP+ + G +RRGK D+D +I + + L K +
Sbjct: 311 VSVLVKEAVWAFLPDAFVTMTGGFRRGKKVGHDVDFLITSQGSTEEEQQQLLHKVLNLWK 370
Query: 411 KEMKFLREDLIFST---------------HSEEVY------------------------- 430
KE L DLI ST H ++ +
Sbjct: 371 KEGLLLYSDLIESTFEKLKLPSRKVDALDHFQKCFLILKLHHQRIDNSKSSQLQGKTWKA 430
Query: 431 --------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVR 482
P + +AF L+ WTG+ R + + LD+ L+ T
Sbjct: 431 IRVDLVMCPYECHAFALLGWTGSRFERDIRRYASHERKMILDNHALYDKT---------- 480
Query: 483 ARTSLKFDTEKEVFDFLGFPWLEPHERN 510
R LK +E+E+F LG ++EP ERN
Sbjct: 481 KRIFLKAGSEEEIFAHLGLDYIEPWERN 508
>gi|302848729|ref|XP_002955896.1| hypothetical protein VOLCADRAFT_96792 [Volvox carteri f. nagariensis]
gi|300258864|gb|EFJ43097.1| hypothetical protein VOLCADRAFT_96792 [Volvox carteri f. nagariensis]
Length = 1420
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 88/146 (60%), Gaps = 5/146 (3%)
Query: 225 RALGEDRRSFSYYKAIP----VIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLS 280
R L DRR KAI V+ ++ + +ES DQ+ L +G+ + + EI+ TG+ S
Sbjct: 940 RDLYMDRRDQFRIKAIDRGMGVLARVSWPLESPDQLSQL-RLGRGTAEKVSEILATGRFS 998
Query: 281 KLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFD 340
+ + FE+DE+ T+ F +VWG G +TA+ + G R+LDD++ LT QRLGL++FD
Sbjct: 999 RNDMFEQDEQRMTMMKFMQVWGCGESTARSWWASGARSLDDVRQRTDLTVRQRLGLRHFD 1058
Query: 341 DIKTRIPRHEVEQMERLLQKAGEEVL 366
D + RIPR E+ Q+ ++++ E L
Sbjct: 1059 DFQRRIPRAEITQIAAVVRQVTIETL 1084
>gi|40218593|gb|AAG53984.2| terminal deoxynucleotidyl transferase [Ginglymostoma cirratum]
Length = 522
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 94/178 (52%), Gaps = 3/178 (1%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
++ +A +++ LP+ I + GLP G + I+EI+ G SK++ DEK +
Sbjct: 187 AFARATSLLKSLPYTISKMAALDGLPCFGDQTRAIIEEILEDGVSSKVDDLLCDEKYKAR 246
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL--THSQRLGLKYFDDIKTRIPRHEVE 352
LF V+G+G TA K Y +G RTL+ +K L T Q+ G Y++DI + R E E
Sbjct: 247 KLFTSVFGVGLKTADKWYGQGFRTLEAVKASKDLKFTKMQKAGFLYYEDINNAVTRPEAE 306
Query: 353 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 410
+ ++++ P+ I+ G +RRGK + D+D +I P+ + FL K V KL
Sbjct: 307 AVAQIIETIVHNYAPDAIVTLTGGFRRGKETGHDVDFLISCPETMD-ENFLRKIVNKL 363
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 18/103 (17%)
Query: 409 KLKEMKFLREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAE-SKGYRLDDTG 467
++K+ K +R DL+ + P +A+ L+ WTG+ R LR K LD+ G
Sbjct: 436 QIKDWKAIRVDLV-------IVPTQQFAYALLGWTGSRQFERDLRRYTNHEKSMILDNHG 488
Query: 468 LFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
L+ + + L TE+E+F L ++EP ERN
Sbjct: 489 LYDR----------KKKIFLNAKTEEEIFAHLDLEYIEPWERN 521
>gi|255720340|ref|XP_002556450.1| KLTH0H13662p [Lachancea thermotolerans]
gi|238942416|emb|CAR30588.1| KLTH0H13662p [Lachancea thermotolerans CBS 6340]
Length = 558
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 111/223 (49%), Gaps = 7/223 (3%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
++N N+ + +L + G+ RS SY A+ I+K I S + LP IG S+
Sbjct: 178 EINANLIQFLEQLSAKFHRQGDKFRSRSYQLALQSIKKHGKPITSEEGALSLPNIGPSIA 237
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDD-LKNED 326
I+ ++ G L L+ + E++ + F +G+G TA+K + G RT D LK
Sbjct: 238 SKIKLVLDVGSLPGLQLSTEREEL--LEYFMNCYGVGSHTARKWADGGARTFKDALKLFP 295
Query: 327 S-LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
S + S G KY+DD RIPR E Q ++++ + V P+ I+ GSYRRG A+CG
Sbjct: 296 SDFSWSILFGWKYYDDWTQRIPRQECAQHLKIVESVLQNVDPQARIVITGSYRRGAATCG 355
Query: 386 DLDVVIMHPDRKSH---KGFLSKYVKKLKEMKFLREDLIFSTH 425
D+D+V+ D S L V KL E ++ L + H
Sbjct: 356 DIDMVLYKQDCDSFDELSQILETVVLKLSETGYIVCPLNLNQH 398
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Query: 439 LIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDF 498
+I +TGND N+ LRL A +G++L + GL+ A G + T L+ +E+ + +
Sbjct: 487 MIYFTGNDDFNKSLRLRATKRGWKLSNNGLYQAAQVPG-----QGDTLLEAFSERRIMEL 541
Query: 499 LGFPWLEPHERNL 511
LG PW+ P +RN+
Sbjct: 542 LGVPWVPPEQRNI 554
>gi|339522243|gb|AEJ84286.1| DNA polymerase beta [Capra hircus]
Length = 141
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 80/131 (61%), Gaps = 2/131 (1%)
Query: 209 LNKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANCEKNVTQAIHKDNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLK 337
L H QR+GLK
Sbjct: 131 KLNHHQRIGLK 141
>gi|426197680|gb|EKV47607.1| hypothetical protein AGABI2DRAFT_118163 [Agaricus bisporus var.
bisporus H97]
Length = 577
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 90/373 (24%), Positives = 155/373 (41%), Gaps = 107/373 (28%)
Query: 233 SFSYYKAIPVIEKLPFKIESAD---QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDE 289
+ +Y +A+ +I+ P I + ++ LPG+G ++ I+E + G + + E + E
Sbjct: 214 ALAYERAVAIIKSYPSVITRDNFRQEISKLPGVGSKVRSKIEEFINNGTIEETETTLESE 273
Query: 290 KVRTISLFGEVWGIGPATAQKLYEKGHRT------------------LDDLKNEDSLTHS 331
+ R++SLF V+GIGP+ A+ LYE G R+ LDD++++ +
Sbjct: 274 RYRSLSLFNTVYGIGPSAARHLYELGLRSVGDLERYYDVPQGANASQLDDIESQTFTPNG 333
Query: 332 QRLGLKYF-------------------DDIKTRIPRHEVEQMERLLQKAGEEVLPEVIIL 372
+ + LK F +D+ T IPR E+E++ R++ E+V
Sbjct: 334 RPVPLKSFTEGNAKIPPISVKVALALREDLNTPIPRAELEEIHRVIMSELEQVQAGCTST 393
Query: 373 CGGSYRRGKASCGDLDVVIMHPDRK----SHKGFLSKYVKKLKEMKFLREDLIFS----- 423
G +RRGK D+D+VI H D S KG +K V++L + + + S
Sbjct: 394 VVGGHRRGKLESNDMDIVITHSDMHQGTGSIKGMAAKLVERLYKRGLVTHVMHLSGFHSH 453
Query: 424 -----------------------------------THSEEVY--------PRDIYAFGLI 440
+ + +Y P + Y ++
Sbjct: 454 NPLRTEHWDSLEKALTVFRLPASSTASQSQSSEAGSQTRRLYRRLDLIFAPPEAYWTAVV 513
Query: 441 AWTGNDVLNRRLRLLAE-SKGYRLDDTGLFPATYGSGGKQGVRARTSLKF--DTEKEVFD 497
W+G+ + R LRL A+ KG + D +GL R S F + E++VF
Sbjct: 514 GWSGSRLFERDLRLWAKVEKGMKFDSSGL------------TRRHDSKLFVPENEEDVFK 561
Query: 498 FLGFPWLEPHERN 510
LG W++P RN
Sbjct: 562 ILGLEWVDPTLRN 574
>gi|320583635|gb|EFW97848.1| Mitochondrial intermediate peptidase [Ogataea parapolymorpha DL-1]
Length = 1600
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 108/195 (55%), Gaps = 13/195 (6%)
Query: 210 NKNITEIFGKLINIYRALG--EDRRSF---SYYKAIPVIEKLPFKIESADQVKGLPGIGK 264
N + + F + I IY + + +F +Y AI IE L + SA +K
Sbjct: 118 NAKVVKRFEEAIRIYELMQFFDKNNAFRIKNYRLAISAIESLDKPLTSAQDLKQFGLDRG 177
Query: 265 SMQDHIQEIVTTGKLSKLEHFEK----DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLD 320
+ H++EI+ TG SKLE ++ DE+ + ++ F +++G+G TA + + G++++
Sbjct: 178 GIAQHVEEILQTGTFSKLETLKQQEMGDERYQLMTQFKKIYGVGDKTAYRFVKAGYKSIQ 237
Query: 321 DLKNED----SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGS 376
D+ ++ SLT +Q+LG+ YFD+ RIPR EVE+ + + EE+ + ++ GS
Sbjct: 238 DIVHDQEMYASLTDAQKLGILYFDEWNERIPRTEVEEHYNFVVREAEEIDKNLKVMLMGS 297
Query: 377 YRRGKASCGDLDVVI 391
YRRG + GD+D+++
Sbjct: 298 YRRGAETSGDIDLIV 312
>gi|164660955|ref|XP_001731600.1| hypothetical protein MGL_0868 [Malassezia globosa CBS 7966]
gi|159105501|gb|EDP44386.1| hypothetical protein MGL_0868 [Malassezia globosa CBS 7966]
Length = 397
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 87/345 (25%), Positives = 161/345 (46%), Gaps = 44/345 (12%)
Query: 155 AESKGDVETNALSEAPNSPMSSESLTNTLSTASASPD----FSSHHITDPSLLYNPPDLN 210
++S+ ++ N + +P S + + + ASP+ S + I P+ L +P N
Sbjct: 26 SKSRQSIDPNHFDDPDATPTPSPTW---IDSQEASPNQGWVNSDYAIFRPTPLVSP--WN 80
Query: 211 KNITEIFGKLINIYRALGEDRRS-FSYYKAIPVIEKLPFKIESAD--QVKGLPGIGKSMQ 267
+ + + + + ++R L D S +Y +A ++ P+ +++ D Q+K + GIG M
Sbjct: 81 QPLVDEL-ECVRMHRRLTRDAHSEMAYLRAASAVKAAPYPLKALDEMQLKAIKGIGPKMI 139
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
IQ+ G + + E D V+T+ F ++ G+GP +++LY++G RTL+D+
Sbjct: 140 TVIQQFYEHGYIPEAEIIRNDRAVQTMFHFMKLHGVGPHMSERLYKEGCRTLEDVILTGK 199
Query: 328 LTHSQRLG----LKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKAS 383
+ + RLG L D+ IPR +VE + + + + ++ + G YRRGK
Sbjct: 200 MEFANRLGPSISLSMLPDLLRPIPRAQVECIRNDILRVLDGLVSNAQAVIVGGYRRGKEL 259
Query: 384 CGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE---------VYPRD- 433
GD+D+V+ +S L V L++ + L S H+E+ VY
Sbjct: 260 SGDVDLVVSSSSEESATTLLHALVHSLRDAGKVSHTLALSRHTEDHRLVDVAEIVYADTS 319
Query: 434 -----------IYAF------GLIAWTGNDVLNRRLRLLAESKGY 461
+YA ++AWTG+ + R LR A+++GY
Sbjct: 320 SGKQMHRRVDIVYAVRAYLGAAILAWTGSSLYERDLRRWAQTRGY 364
>gi|61553055|gb|AAX46342.1| polymerase (DNA directed), mu [Bos taurus]
Length = 341
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 94/172 (54%), Gaps = 1/172 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N +++E L G + R ++Y+A V++ LP + + Q++GLP G+
Sbjct: 149 NASLSEALETLAEAAGFDGSEGRQIAFYRAASVLKALPSPVTALSQLQGLPHFGEHSCRV 208
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-L 328
+QE++ G ++E E+ +T+ LF +++G+G TA + Y KG RTL DL+ E L
Sbjct: 209 VQELLEHGVCDEVERVRLSERYQTMKLFTQIFGVGVRTADQWYRKGLRTLADLREESQRL 268
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRG 380
T Q+ GL++ D+ I R +VE +++ ++ A + LP + GS+RR
Sbjct: 269 TQQQKAGLQHHQDLSAPILRSDVEALQQEVEAAVRQALPGATVTLAGSFRRA 320
>gi|71666008|ref|XP_819968.1| mitochondrial DNA polymerase beta [Trypanosoma cruzi strain CL
Brener]
gi|70885292|gb|EAN98117.1| mitochondrial DNA polymerase beta, putative [Trypanosoma cruzi]
gi|407832614|gb|EKF98512.1| mitochondrial DNA polymerase beta, putative [Trypanosoma cruzi]
Length = 403
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 89/303 (29%), Positives = 143/303 (47%), Gaps = 43/303 (14%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIE-KLPFKIESADQVKGLPGIGKS 265
PD +NI IF ++ ++ ALGE + SY +A+ ++ L + + + ++ PG G
Sbjct: 11 PDSRENIIRIFKEMADLNNALGEKYKVQSYIRALNSLKTNLDLPLRTVEDLERFPGFGSK 70
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDL-- 322
+ +EI+ TGKL +LE K K++ I +V G GP A L+++ G T+++L
Sbjct: 71 LLKKAEEIIMTGKLEELEKKTKP-KLKAIQELTQVHGFGPRAAAALFDREGIFTVEELIE 129
Query: 323 -KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVL-PEVIILCGGSYRRG 380
+ LT QR+G+KYF DI +IP HE E L+++ + L + I GSYRR
Sbjct: 130 KADRIQLTDQQRVGVKYFHDINEKIPMHESVLHENFLRESVQARLTSDYEIQVCGSYRRR 189
Query: 381 KASCGDLDVVIM---------HPDRKSHKGFLSKYVKKLKEMKFLREDLI---------- 421
GD+D ++ +P ++ G L V L+E +L +
Sbjct: 190 HPFSGDVDAILARTLSAPPLDYP--VTNTGVLGTLVDYLQERNYLEATMAQGPLKYMGMG 247
Query: 422 ---------FSTH--SEEVYPRDIYA----FGLIAWTGNDVLNRRLRLLAESKGYRLDDT 466
+ H + V R I A L+ +TG+ N +R A SKGY L++
Sbjct: 248 RLPPRTTNGTTKHYKARRVDIRLIEARSVPTALLTFTGSKNFNVIMRQAAISKGYLLNEY 307
Query: 467 GLF 469
GLF
Sbjct: 308 GLF 310
>gi|71650066|ref|XP_813738.1| mitochondrial DNA polymerase beta [Trypanosoma cruzi strain CL
Brener]
gi|70878652|gb|EAN91887.1| mitochondrial DNA polymerase beta, putative [Trypanosoma cruzi]
Length = 403
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 88/301 (29%), Positives = 141/301 (46%), Gaps = 39/301 (12%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIE-KLPFKIESADQVKGLPGIGKS 265
PD +NI IF ++ ++ ALGE + SY +A+ ++ L + + + ++ PG G
Sbjct: 11 PDSRENIIRIFKEMADLNNALGEKYKVQSYIRALNSLKTNLDLPLRTVEDLERFPGFGSK 70
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDL-- 322
+ +EI+ TGKL +LE K K++ I +V G GP A L+++ G T+++L
Sbjct: 71 LLKKAEEIIMTGKLEELEKKTKP-KLKAIQELTQVHGFGPRAAAALFDREGIFTVEELIE 129
Query: 323 -KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVL-PEVIILCGGSYRRG 380
+ LT QR+G+KYF DI +IP HE E L+++ + L + I GSYRR
Sbjct: 130 KADRIQLTDQQRVGVKYFHDINEKIPMHESVLHENFLRESVQARLTSDYEIQVCGSYRRR 189
Query: 381 KASCGDLDVVIMHPDRK-------SHKGFLSKYVKKLKEMKFLREDLI------------ 421
GD+D ++ ++ G L V L+E +L +
Sbjct: 190 HPFSGDVDAILARTLSAPPLDCPVTNTGVLGTLVDYLQERNYLEATMAQGPLKYMGMGRL 249
Query: 422 -------FSTH--SEEVYPRDIYA----FGLIAWTGNDVLNRRLRLLAESKGYRLDDTGL 468
+ H + V R I A L+ +TG+ N +R A SKGY L++ GL
Sbjct: 250 PPRTTNGTTKHYKARRVDIRLIEARSVPTALLTFTGSKNFNVIMRQAAISKGYLLNEYGL 309
Query: 469 F 469
F
Sbjct: 310 F 310
>gi|345569152|gb|EGX52020.1| hypothetical protein AOL_s00043g410 [Arthrobotrys oligospora ATCC
24927]
Length = 642
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 85/165 (51%), Gaps = 5/165 (3%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT---GKLSKLEHFEKDEKV 291
+Y +I I P KI Q+ LPG + E + G+L LE EK
Sbjct: 260 AYSTSIASIAAFPHKITHISQIHALPGCEGKIGALWYEFTHSEPPGRLGVLEETEKSVYY 319
Query: 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRH 349
+T+ LF VWG G +AQ Y++G R LDDL + LT Q++G+K++D+ + +IPR
Sbjct: 320 KTLELFYNVWGAGAHSAQSFYKQGFRDLDDLVEHHWKKLTRVQQIGVKFYDEFQDKIPRD 379
Query: 350 EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
EV + +Q ++LP G +RRGK D+D++I HP
Sbjct: 380 EVISIRDAIQNHARQLLPGAETAVVGGFRRGKELSADVDLLITHP 424
>gi|350636864|gb|EHA25222.1| hypothetical protein ASPNIDRAFT_42418 [Aspergillus niger ATCC 1015]
Length = 676
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 114/252 (45%), Gaps = 22/252 (8%)
Query: 189 SPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINI--YRALGEDRRSF-SYYKAIPVIEK 245
+PD+ H+ L P L+ +LI I R L D +Y +I I
Sbjct: 270 APDWVKEHVLYACLRSAP--LHPPNEGFINQLIKIRQIRELTLDEIGVRAYSTSIAAIAA 327
Query: 246 LPFKIESADQVKGLPGIGKSMQDHIQEI--VTTGKLSKLEHFEKDEKVRTISLFGEVWGI 303
P + +V LPG + + E TG LS + D +R ++ F +WG+
Sbjct: 328 YPHEFRRPSEVLTLPGCDTKIANLFYEYQESPTGTLSAASLLDTDPTLRILNTFYNIWGV 387
Query: 304 GPATAQKLYEKGHRT-LDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQK 360
G TA++LY H T LDD+ SLT Q++G+KY+D+ IPR EVEQ+ + +
Sbjct: 388 GAKTARELYYYRHWTDLDDIIEHGWSSLTRVQQIGVKYYDEFLIGIPRPEVEQIATTVTQ 447
Query: 361 AGEEVLP----------EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 410
V P + II+ G YRRGK CGD+D+++ HPD K + V L
Sbjct: 448 HANLVRPTSFDNEEKGIQCIIV--GGYRRGKPLCGDVDLILTHPDESLTKNLVLDVVASL 505
Query: 411 KEMKFLREDLIF 422
+ ++ L
Sbjct: 506 ESSGWITHTLAL 517
>gi|358369850|dbj|GAA86463.1| terminal deoxynucleotidyl transferase [Aspergillus kawachii IFO
4308]
Length = 676
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 91/357 (25%), Positives = 149/357 (41%), Gaps = 29/357 (8%)
Query: 84 SVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSHRKKI 143
SV++ WL+ L+ E +S D Y I IA R ++ + S + R +
Sbjct: 172 SVVKLDWLDQCLKAQELLSTDPYTIY-------IARRAPRPVEPSKPASLGSDILQRARQ 224
Query: 144 KSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLL 203
++ ++ P ++ S + +PD+ H+ L
Sbjct: 225 DAALRPPPKPPTVYHHARTHDSTHNPPKLYRTTTSENEETESLPPAPDWVKEHVLYACLR 284
Query: 204 YNPPDLNKNITEIFGKLINI--YRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLP 260
P L+ +LI I R L D +Y +I I P + ++ LP
Sbjct: 285 STP--LHPPNEGFINQLIKIRQIRELTLDEIGVRAYSTSIAAIAAYPHEFRRPSEILTLP 342
Query: 261 GIGKSMQDHIQEI--VTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRT 318
G + + E TG LS + D ++ ++ F +WG+G TA++ Y H T
Sbjct: 343 GCDTKIANLFYEYQQSPTGTLSAATLLDTDPTLQILNNFYNIWGVGAKTAREFYYYRHWT 402
Query: 319 -LDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP-------- 367
LDD+ ++LT Q++GLKY+D+ T IPR EVEQ+ + + V P
Sbjct: 403 DLDDIIEHGWNNLTRVQQIGLKYYDEFLTGIPRPEVEQIATTVTQHANLVRPTSFDNEEK 462
Query: 368 --EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIF 422
+ II+ G YRRGK CGD+D+++ HPD K + V L+ ++ L
Sbjct: 463 GIQCIIV--GGYRRGKPLCGDVDLILTHPDESLTKNLVVDVVASLESSGWITHTLAL 517
>gi|229463112|gb|ACQ66108.1| DNA polymerase beta [Trypanosoma cruzi]
Length = 403
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 88/303 (29%), Positives = 143/303 (47%), Gaps = 43/303 (14%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIE-KLPFKIESADQVKGLPGIGKS 265
PD +NI IF ++ ++ ALGE + SY +A+ ++ L + + + ++ PG G
Sbjct: 11 PDSRENIIRIFKEMADLNNALGEKYKVQSYIRALNSLKTNLDLPLRTVEDLERFPGFGSK 70
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDL-- 322
+ +EI+ TGKL +LE K K++ I +V G GP A L+++ G T+++L
Sbjct: 71 LLKKAEEIIMTGKLEELEKKTK-PKLKAIQELTQVHGFGPRAAAALFDREGIFTVEELIE 129
Query: 323 -KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVL-PEVIILCGGSYRRG 380
+ LT QR+G+KYF DI +IP HE E L+++ + L + I G+YRR
Sbjct: 130 KADRIQLTDQQRVGVKYFHDINEKIPMHESVLHENFLRESVQARLTSDYEIQVCGTYRRR 189
Query: 381 KASCGDLDVVIM---------HPDRKSHKGFLSKYVKKLKEMKFLREDLI---------- 421
GD+D ++ +P ++ G L V L+E +L +
Sbjct: 190 HPFSGDVDAILARTLSAPPLDYP--VTNTGVLGTLVDYLQERNYLEATMAQGPLKYMGMG 247
Query: 422 ---------FSTH--SEEVYPRDIYA----FGLIAWTGNDVLNRRLRLLAESKGYRLDDT 466
+ H + V R I A L+ +TG+ N +R A SKGY L++
Sbjct: 248 RLPPRTTNGTTKHYKARRVDIRLIEARSVPTALLTFTGSKNFNVIMRQAAISKGYLLNEY 307
Query: 467 GLF 469
GLF
Sbjct: 308 GLF 310
>gi|407395989|gb|EKF27316.1| mitochondrial DNA polymerase beta, putative [Trypanosoma cruzi
marinkellei]
Length = 403
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 88/301 (29%), Positives = 140/301 (46%), Gaps = 39/301 (12%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIE-KLPFKIESADQVKGLPGIGKS 265
PD +NI IF ++ ++ ALGE + SY +A+ ++ L + + + ++ PG G
Sbjct: 11 PDSRENIIRIFKEMADLNNALGEKYKVQSYNRAVHSLKTNLDLPLRTVEDLERFPGFGSK 70
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDL-- 322
+ +EI+ TGKL +LE K K++ I +V G GP A L+++ G T+++L
Sbjct: 71 LLKKAEEIIMTGKLEELEKKTKP-KLKAIQELTQVHGFGPRAAAALFDREGIFTVEELIE 129
Query: 323 -KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVL-PEVIILCGGSYRRG 380
+ LT QR+G+KYF DI +IP HE E L+++ + L + I GSYRR
Sbjct: 130 KADRIQLTDQQRVGVKYFHDINEKIPMHESVLHENFLRESVQARLGSDYEIQVCGSYRRR 189
Query: 381 KASCGDLDVVIMHPDRK-------SHKGFLSKYVKKLKEMKFLREDLI------------ 421
GD+D ++ + G L V L+E +L +
Sbjct: 190 HPFSGDVDAILARTLSAPPLDFPVTTTGVLGTLVDYLQERNYLEATMAQGPLKYMGMGRL 249
Query: 422 -------FSTH--SEEVYPRDIYA----FGLIAWTGNDVLNRRLRLLAESKGYRLDDTGL 468
+ H + V R I A L+ +TG+ N +R A SKGY L++ GL
Sbjct: 250 PPRTTNGTTKHYKARRVDIRLIEARSVPTALLTFTGSKNFNVIMRQAAISKGYLLNEYGL 309
Query: 469 F 469
F
Sbjct: 310 F 310
>gi|226293847|gb|EEH49267.1| DNA polymerase beta [Paracoccidioides brasiliensis Pb18]
Length = 687
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 97/408 (23%), Positives = 175/408 (42%), Gaps = 47/408 (11%)
Query: 62 LAMDLEALLQQVSKQHLARFKGSVI--RYQWLEDSLRLGEKVSEDLY-----RIKLDPEG 114
L +L + Q + H+ + VI + WL++SL+ G V Y R P+
Sbjct: 146 LKRELGPSMAQPAGLHMPELEDEVIVLKLSWLDESLKAGRAVPLAPYIVYHARKIAPPDN 205
Query: 115 ENIADRV---LSQIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPN 171
+ + V S+ +TS ESS + ++ + D + S +++ A N
Sbjct: 206 MSFPETVSNPASEPATPRSTSKQRESSSKGILERAMADA---ASSSPTPIKSRLARRADN 262
Query: 172 SP----------MSSESLTNTLSTASASPDFSSHHI---TDPSLLYNPPDLNKNITEIFG 218
P + +PD+ +++ S +PP N+
Sbjct: 263 GPPIQKPPPKLVRETTEEHEAAEAPPRTPDWVRNNLIYACQRSAFLHPP--NEAFINQLD 320
Query: 219 KLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEI--VTT 276
K+ I ++ +Y AI I P+ ++SA +V LPG + E +
Sbjct: 321 KIKKIRELTLDEIGVRAYSTAIASIAAYPYPLKSATEVSSLPGCEVKIATLFSEFNQSSD 380
Query: 277 GKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLDDL--KNEDSLTHSQR 333
G L + D + ++ F +WG+G TA++ Y + H RT+DD+ + +SL+ Q+
Sbjct: 381 GTLESANQLDTDPVLSVLNKFSNIWGVGAKTAREFYYQHHWRTIDDIIEQGWNSLSRVQQ 440
Query: 334 LGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI----------ILCGGSYRRGKAS 383
+G+KYFD+ IPR EVE + + + + V PE I+ GG YRRGK
Sbjct: 441 IGIKYFDEFMDGIPRSEVESIADTVLRHAKLVRPESQEDYKGAAIEGIIVGG-YRRGKER 499
Query: 384 CGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDL---IFSTHSEE 428
CGD+D+++ H + + + V L++ ++ L + ++H E+
Sbjct: 500 CGDVDLILTHRNERVTHNLVYDVVVSLEQEGWITHTLALHLTNSHREQ 547
>gi|54766|emb|CAA27735.1| DNA nucleotidylexotransferase [Mus musculus]
Length = 529
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 103/190 (54%), Gaps = 6/190 (3%)
Query: 212 NITEIFGKLINIYRALGEDRR----SFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N ++F ++I E R ++ A V++ LPF I S +G+P +G ++
Sbjct: 163 NYNQLFTDALDILAENDELRENEGSCLAFMGASSVLKSLPFPITSMKDTEGIPCLGDKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+ I+ G+ S+ + DE+ ++ LF V+G+G TA+K + G RTL ++++ S
Sbjct: 223 SIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQSDKS 282
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E + + L+++A LP+ ++ G +RRGK +
Sbjct: 283 LRFTKMQKAGFLYYEDLVSCVNRPEAQAVSMLVKEAVVTFLPDALVTMTGGFRRGKMTGH 342
Query: 386 DLDVVIMHPD 395
D+D +I P+
Sbjct: 343 DVDFLITSPE 352
Score = 39.3 bits (90), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 19/111 (17%)
Query: 411 KEMKFLREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLF 469
K K +R DL+ + A L+ WTG+ R LR A + LD+ L+
Sbjct: 426 KGWKAIRVDLVMCPYE--------CACALLGWTGSRQFERDLRRYATHERKMMLDNHALY 477
Query: 470 PATYGSG----------GKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
T G K R L+ ++E+E+F LG ++EP ERN
Sbjct: 478 DRTKGKTVTISPLDGKVSKLQKALRVFLEAESEEEIFAHLGLDYIEPWERN 528
>gi|398405886|ref|XP_003854409.1| DNA polymerase beta-like protein [Zymoseptoria tritici IPO323]
gi|339474292|gb|EGP89385.1| DNA polymerase beta-like protein [Zymoseptoria tritici IPO323]
Length = 670
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 108/210 (51%), Gaps = 5/210 (2%)
Query: 219 KLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTG 277
K I + R L D +Y +I + KI + ++ LPG + + E TG
Sbjct: 304 KQIKLGRLLTNDEIGVRAYSTSIAALAAYNHKISNPREILALPGCDHKIANLYVEWQNTG 363
Query: 278 KLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL-YEKGHRTLDDLK--NEDSLTHSQRL 334
++ +E E ++ ++ ++ F ++WG+G TA+ L Y KG DDL L+ Q++
Sbjct: 364 RIQAVEELESNQDLKILNGFYDIWGVGVTTARDLYYNKGWTDRDDLIEFGWSYLSRVQQI 423
Query: 335 GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI-ILCGGSYRRGKASCGDLDVVIMH 393
G+K++D+ IPR EVE + ++++ V + I + G YRRGK +CGD+D+++ H
Sbjct: 424 GVKFYDEFLDLIPRVEVESICEVIREHAVRVRDDGIQTMIVGGYRRGKEACGDVDLILSH 483
Query: 394 PDRKSHKGFLSKYVKKLKEMKFLREDLIFS 423
PD ++ V L+E +++ L S
Sbjct: 484 PDESKTLDLVTDLVASLEEEEWITHTLTIS 513
>gi|225684227|gb|EEH22511.1| DNA polymerase beta [Paracoccidioides brasiliensis Pb03]
Length = 679
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 107/212 (50%), Gaps = 19/212 (8%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEI--VTTGKLSKLEHFEKDEKVR 292
+Y AI I P+ ++SA +V LPG + E + G L + D +
Sbjct: 337 AYSTAIASIAAYPYPLKSATEVSSLPGCEVKIATLFSEFNQSSDGTLESANQLDADPVLS 396
Query: 293 TISLFGEVWGIGPATAQKLYEKGH-RTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRH 349
++ F +WG+G TA++ Y + H RT+DD+ + +SL+ Q++G+KYFD+ IPR
Sbjct: 397 VLNKFSNIWGVGAKTAREFYYQHHWRTIDDIIEQGWNSLSRVQQIGIKYFDEFMDGIPRS 456
Query: 350 EVEQMERLLQKAGEEVLPEVI----------ILCGGSYRRGKASCGDLDVVIMHPDRKSH 399
EVE + + + + V PE I+ GG YRRGK CGD+D+++ H + +
Sbjct: 457 EVESIADTVLRHAKLVRPESQEDYKGAAIEGIIVGG-YRRGKERCGDVDLILTHRNERVT 515
Query: 400 KGFLSKYVKKLKEMKFLREDL---IFSTHSEE 428
+ V L++ ++ L + ++H E+
Sbjct: 516 HNLVYDVVVSLEQEGWITHTLALHLTNSHREQ 547
>gi|19113889|ref|NP_592977.1| DNA polymerase X family [Schizosaccharomyces pombe 972h-]
gi|1175369|sp|Q09693.1|DPO4_SCHPO RecName: Full=DNA polymerase type-X family protein pol4
gi|1052789|emb|CAA90493.1| DNA polymerase X family [Schizosaccharomyces pombe]
Length = 506
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 78/310 (25%), Positives = 140/310 (45%), Gaps = 29/310 (9%)
Query: 228 GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEK 287
GE R+ +Y AI I+ P I+SA+Q++ +PG G + +E +TG L + E F+K
Sbjct: 197 GESVRTRAYGMAIATIKAFPLPIDSAEQLEKMPGCGPKIVHLWKEFASTGTLKEAEEFQK 256
Query: 288 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDD-IKTR 345
D + + LF ++G+G + A + Y+KG RT++ + K++DS T ++GL++++D KT
Sbjct: 257 DPASKILLLFYNIFGVGASHAAEWYQKGWRTIEQVRKHKDSFTKQIKVGLEFYEDFCKTV 316
Query: 346 IPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSK 405
E E ++ + + + + ++ G +RRGK D+D+V+ S K +
Sbjct: 317 TIEEATEIYETIVSRMPDGIKIQSCLV--GGFRRGKPVGADVDMVLSPSHTHSTKHLVDV 374
Query: 406 YVKKLKE-----------------MKFLREDLIFSTHSE-------EVYPRDIYAFGLIA 441
++ L E ++ +I S S+ V P ++
Sbjct: 375 LLRILDEEFQFRLISVQEHSCGGKKGYVMLAVILSNSSKINRRVDIIVVPPAYIGSAVLG 434
Query: 442 WTGNDVLNRRLRLLAESK-GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLG 500
W+G R L+L A S G D + G + EK++F +
Sbjct: 435 WSGGIFFLRDLKLYANSHLGLSYDSFEIINLKTGKDICPDEFNEWKDPVEAEKDIFRYFS 494
Query: 501 FPWLEPHERN 510
++EP RN
Sbjct: 495 LEYIEPKFRN 504
>gi|440903072|gb|ELR53779.1| DNA polymerase mu [Bos grunniens mutus]
Length = 341
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 93/172 (54%), Gaps = 1/172 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N +++E L G + R ++Y+A V++ LP + + Q++GLP G+
Sbjct: 149 NASLSEALETLAEAAGFDGSEGRQIAFYRAASVLKALPSPVTALSQLQGLPHFGEHSCRV 208
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-L 328
+QE++ G ++E E+ +T+ LF +++G+G TA + Y KG RTL DL+ E L
Sbjct: 209 VQELLEHGVCDEVERVRLSERYQTMKLFTQIFGVGVRTADQWYRKGLRTLADLQEESQRL 268
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRG 380
T Q+ GL++ D+ I R +VE +++ ++ A + LP + G +RR
Sbjct: 269 TQQQKAGLQHHQDLSAPILRSDVEALQQEVEAAVRQALPGATVTLAGGFRRA 320
>gi|115443076|ref|XP_001218345.1| high-affinity nickel transport protein [Aspergillus terreus
NIH2624]
gi|114188214|gb|EAU29914.1| high-affinity nickel transport protein [Aspergillus terreus
NIH2624]
Length = 1044
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 99/202 (49%), Gaps = 14/202 (6%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVT--TGKLSKLEHFEKDEKVR 292
+Y +I I P++ +V LPG + + E T L+ + D ++R
Sbjct: 688 AYSTSIAAIAAYPYEFRRPSEVLTLPGCDAKIAHLLAEYQASETRTLAAAKALTTDPELR 747
Query: 293 TISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNED--SLTHSQRLGLKYFDDIKTRIPRH 349
+ F ++WG+GP TA++ Y +G R LDD+ L+ Q++G+KY+D+ + IPR
Sbjct: 748 VLHEFSQIWGVGPKTAREFYYARGWRDLDDIVEHGWAGLSRVQQIGVKYYDEFRRGIPRG 807
Query: 350 EVEQMERLLQKAGEEVLPEV--------IILCGGSYRRGKASCGDLDVVIMHPDRKSHKG 401
EVE + R++ + V PE IL GG YRRGK GD+D+++ H D +
Sbjct: 808 EVEAIARVVHRHANAVRPEAAYDGRGVECILVGG-YRRGKEISGDVDLILTHRDETVTRN 866
Query: 402 FLSKYVKKLKEMKFLREDLIFS 423
+ V L+ ++ L +
Sbjct: 867 LVVDVVGSLEAEGWVTHTLALN 888
>gi|296416884|ref|XP_002838099.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634005|emb|CAZ82290.1| unnamed protein product [Tuber melanosporum]
Length = 598
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 140/334 (41%), Gaps = 45/334 (13%)
Query: 221 INIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGK- 278
I + R L D +Y AI ++ P+ + S +V LPG +E +T+
Sbjct: 262 IKLSRVLTSDGVGIRAYSTAIATLQAYPYPLISPSEVSLLPGCDGKSSALFEEYITSPDH 321
Query: 279 -LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL-YEKGHRTLDDLKNED--SLTHSQRL 334
L+ + EK + LF +WG+GP A++ Y+KG +TL+D+ + LT +Q++
Sbjct: 322 GLAVVRELEKSPSFNILKLFSSIWGVGPVGAREFFYDKGWKTLEDIVDHGWGQLTRAQQI 381
Query: 335 GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
G+KYFD+ ++ I R+E + ++ KA ++ + G YRRGK D+D+++ H
Sbjct: 382 GVKYFDEFQSPISRNEARDIAAVVGKAAAKLRAGMDYTIVGGYRRGKMEIHDVDILLSHT 441
Query: 395 DRK-SHKGFLSKYVKKLKEMKFLREDLIFSTHSEEVYPRDIYAFG--------------- 438
+ G + + V +L+ + L + + +G
Sbjct: 442 THSMTTGGVVKELVSELEASGHITHTLHLGRELNNTTTINAHRYGFDSLEKALVVFLAPN 501
Query: 439 --------------------LIAWTGNDVLNRRLRLLAESK-GYRLDDTGLFPATYGS-- 475
L+ WTG R LRL + + G++ G+F G
Sbjct: 502 SGLHRRVDIILAPPVSVGSALLGWTGGTTFERDLRLWCDKEHGWKFTSEGVFERITGRRV 561
Query: 476 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
G G + E+ V + +G WLEP ER
Sbjct: 562 AGVDGTWRVGEKMVEAERRVMEGVGLRWLEPCER 595
>gi|449539952|gb|EMD30953.1| hypothetical protein CERSUDRAFT_163631, partial [Ceriporiopsis
subvermispora B]
Length = 184
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 94/156 (60%), Gaps = 12/156 (7%)
Query: 272 EIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL---KNEDSL 328
EI++TG+L +LE FEK E TI+LF ++G+G TA+K Y +G RTL DL K L
Sbjct: 2 EIISTGELRRLE-FEKTEDAETITLFQGIYGVGLNTARKWYNRGCRTLQDLNEGKGGVQL 60
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
+H Q++ +KY+ DI +R+PR E ++ L + P++ I GSYRR + CGD+D
Sbjct: 61 SHVQQIVVKYYADINSRMPRAEAAEILAL------RLDPQLFIAILGSYRRCEPDCGDID 114
Query: 389 VVI--MHPDRKSHKGFLSKYVKKLKEMKFLREDLIF 422
++I + D K+H+G L + + +L L EDL
Sbjct: 115 ILITRLTDDGKTHRGLLRRLLGELHAQGILTEDLCL 150
>gi|378731420|gb|EHY57879.1| DNA polymerase IV [Exophiala dermatitidis NIH/UT8656]
Length = 749
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 115/233 (49%), Gaps = 27/233 (11%)
Query: 201 SLLYNPPD--LNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKG 258
S NPP+ +T+I I I +G +Y +I I P+ I A+++
Sbjct: 302 STPMNPPNSAFIAQLTKIRDARILILDDIG----VRAYSSSIASIAAYPYLIRHAEEINR 357
Query: 259 LPGIGKSMQDHIQEIVTTG------KLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY 312
LPG + + E +G + + E D ++ + LF +WG+GP TA+K Y
Sbjct: 358 LPGCNEKIAMLWNEWYHSGPEDSERSIQTVTDLENDIDLQHLRLFWNIWGVGPETARKFY 417
Query: 313 -EKGHRTLDDLK--NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVL--- 366
E G + L+D+ +L Q++G+KY+D+ + +IPR EVEQ+ ++ + VL
Sbjct: 418 FEHGWQDLNDVVEFGWSTLNRVQQIGVKYYDEFQEKIPRAEVEQIGEVIHRHARGVLDIK 477
Query: 367 ------PEVI--ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLK 411
PE + I+ GG YRRGK + GD+DVV+ H D + + V+ L+
Sbjct: 478 SSQYGTPEDVECIIVGG-YRRGKTASGDVDVVLSHRDESKTQDLVGYVVRSLE 529
>gi|332865055|ref|XP_001142751.2| PREDICTED: DNA-directed DNA/RNA polymerase mu isoform 3 [Pan
troglodytes]
Length = 457
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/331 (23%), Positives = 141/331 (42%), Gaps = 57/331 (17%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N ++E L G + R ++ +A V++ LP + + Q++GLP G+
Sbjct: 153 NTGLSEALETLAEAAGFEGSEGRLLTFCRAASVLKALPSPVTTLSQLQGLPHFGEHSSRV 212
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 328
+QE++ G ++E ++ E+ +T+ LF +++G+G TA + Y +G RTLDDL+ + L
Sbjct: 213 VQELLEHGVCEEVERVQRSERYQTMKLFTQIFGVGVKTADRWYREGLRTLDDLREQPQKL 272
Query: 329 THSQRLGLKYFDD----IKTRIPRHEVEQMERLLQKAG----EEVLPEVIILCGGSYRRG 380
T Q+ + ++ R P G + LP+ +IL Y +
Sbjct: 273 TQQQKAAPPGPEHPSPAVRCRCPAAGGGGSCGAGPAWGHRHADRRLPQGLIL----YHQH 328
Query: 381 KASCGDLDVVIMHPDRKSHKGFLSKY--------------------VKKLKEMKFLREDL 420
+ SC + P R + + + + + K +R DL
Sbjct: 329 QHSCWE------SPTRLAQQSHMDAFERSFCIFRLPQPPGAAVGGSTRPCPSWKAVRVDL 382
Query: 421 IFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQ 479
+ V P + F L+ WTG+ + R LR + + KG L+ GLF
Sbjct: 383 V-------VAPVSQFPFALLGWTGSKLFQRELRRFSRKEKGLWLNSHGLF---------- 425
Query: 480 GVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+T + +E+++F LG +L P +RN
Sbjct: 426 DPEQKTFFQAASEEDIFRHLGLEYLPPEQRN 456
>gi|397467155|ref|XP_003805292.1| PREDICTED: DNA-directed DNA/RNA polymerase mu isoform 2 [Pan
paniscus]
Length = 457
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/331 (23%), Positives = 141/331 (42%), Gaps = 57/331 (17%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N ++E L G + R ++ +A V++ LP + + Q++GLP G+
Sbjct: 153 NTGLSEALETLAEAAGFEGSEGRLLTFCRAASVLKALPSPVTTLSQLQGLPHFGEHSSRV 212
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 328
+QE++ G ++E ++ E+ +T+ LF +++G+G TA + Y +G RTLDDL+ + L
Sbjct: 213 VQELLEHGVCEEVERVQRSERYQTMKLFTQIFGVGVKTADRWYREGLRTLDDLREQPQKL 272
Query: 329 THSQRLGLKYFDD----IKTRIPRHEVEQMERLLQKAG----EEVLPEVIILCGGSYRRG 380
T Q+ + ++ R P G + LP+ +IL Y +
Sbjct: 273 TQQQKAAPPGPEHPSPAVRCRCPAAGGGGSCGAGPAWGHRHADRRLPQGLIL----YHQH 328
Query: 381 KASCGDLDVVIMHPDRKSHKGFLSKY--------------------VKKLKEMKFLREDL 420
+ SC + P R + + + + + K +R DL
Sbjct: 329 QHSCWE------SPTRLAQQSHMDAFERSFCIFRLPQPPGAAVGGSTRPCPSWKAVRVDL 382
Query: 421 IFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQ 479
+ V P + F L+ WTG+ + R LR + + KG L+ GLF
Sbjct: 383 V-------VAPVSQFPFALLGWTGSKLFQRELRRFSRKEKGLWLNSHGLF---------- 425
Query: 480 GVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+T + +E+++F LG +L P +RN
Sbjct: 426 DPEQKTFFQAASEEDIFRHLGLEYLPPEQRN 456
>gi|355712674|gb|AES04428.1| polymerase , mu [Mustela putorius furo]
Length = 330
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 111/213 (52%), Gaps = 4/213 (1%)
Query: 200 PSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGL 259
P+ L +P N + +E L G + R S+ +A V++ LP ++ + Q++GL
Sbjct: 115 PTPLTHP---NTSFSEALEVLAEAAGFEGSEGRFLSFRRAAAVLKALPSQVTALSQLQGL 171
Query: 260 PGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTL 319
P G+ +QE++ G ++E + E+ +T+ LF ++G+G TA + Y G RTL
Sbjct: 172 PNFGERSCRVVQELLEHGVCEEVERVRRSERYQTMKLFTGIFGVGVKTADRWYRDGLRTL 231
Query: 320 DDLKNEDSLTHSQRL-GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYR 378
D L+ + Q+ GL+++ ++ + R E E +++ ++ A ++LP + G +R
Sbjct: 232 DSLQEQLQRLTQQQRAGLQHYRELSIPVQRPEAEALQQEVEAAAVDILPGATVTLVGGFR 291
Query: 379 RGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLK 411
RGK D+D+++ HP G L + +L+
Sbjct: 292 RGKLHGHDVDLLLSHPQEGLVAGLLPHVMHRLE 324
>gi|426356075|ref|XP_004045417.1| PREDICTED: DNA-directed DNA/RNA polymerase mu isoform 2 [Gorilla
gorilla gorilla]
Length = 457
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/331 (23%), Positives = 140/331 (42%), Gaps = 57/331 (17%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N ++E L G + R ++ +A V++ LP + + Q++GLP G+
Sbjct: 153 NTGLSEALETLAEAAGFEGSEGRLLTFCRAASVLKALPSPVTTLSQLQGLPHFGEHSSRV 212
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 328
+QE++ G ++E + E+ +T+ LF +++G+G TA + Y +G RTLDDL+ + L
Sbjct: 213 VQELLEHGVCEEVERVRRSERYQTMKLFTQIFGVGVKTADRWYREGLRTLDDLREQPQKL 272
Query: 329 THSQRLGLKYFDD----IKTRIPRHEVEQMERLLQKAG----EEVLPEVIILCGGSYRRG 380
T Q+ + ++ R P G + LP+ +IL Y +
Sbjct: 273 TQQQKAAPPGPEHPSPAVRCRCPAAGGGGSCGAGPAWGHRHADRRLPQGLIL----YHQH 328
Query: 381 KASCGDLDVVIMHPDRKSHKGFLSKY--------------------VKKLKEMKFLREDL 420
+ SC + P R + + + + + K +R DL
Sbjct: 329 QHSCWE------SPTRLAQQSHMDAFERSFCIFRLPQPPGAAVGGSTRPCPSWKAMRVDL 382
Query: 421 IFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQ 479
+ V P + F L+ WTG+ + R LR + + KG L+ GLF
Sbjct: 383 V-------VAPVSQFPFALLGWTGSKLFQRELRRFSRKEKGLWLNSHGLF---------- 425
Query: 480 GVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+T + +E+++F LG +L P +RN
Sbjct: 426 DPEQKTFFQAASEEDIFRHLGLEYLPPEQRN 456
>gi|321459302|gb|EFX70357.1| hypothetical protein DAPPUDRAFT_300508 [Daphnia pulex]
Length = 538
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 93/164 (56%), Gaps = 13/164 (7%)
Query: 243 IEKLPFKIESADQVKGLPGIGKSMQDHIQ-EIVTTGKLSKLEHFEKDEKVRTISLFGEVW 301
I+ LPFK ++ Q+KG+ G+G + +I+ +G ++E D+K ++ +F +V+
Sbjct: 205 IKCLPFKATNSQQLKGIKGLGNGHALRVATQILESGYCPEVEEKRNDKKFLSLQIFCKVY 264
Query: 302 GIGPATAQKLYEKGHRTLDDLK--------NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQ 353
G+GP+ A+K Y +G RT++D+K N D + H G+ ++DD+ + R E E
Sbjct: 265 GVGPSIAEKWYAQGLRTVEDVKKLDQQDIANNDMIAH----GVAFYDDLNRPLLRAEAEN 320
Query: 354 MERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRK 397
+ + + +LP V+ G + RGK+S DLDV+ +P+R+
Sbjct: 321 TYKYITDLAKLILPSVVTSMNGGFLRGKSSGHDLDVLFSYPERE 364
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 24 VFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEA---LLQQVSKQHLAR 80
++++ + RRL+I + + +MG T+ ++ VTHVL+ +LE +L+
Sbjct: 35 IYILPDCIGPRRLEIMEKSVDKMGLTLSTRMIANVTHVLS-ELETKEDVLESKEFSIFKS 93
Query: 81 FKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQ 126
+KG ++ +WL + LR VSE + + P E AD V+ ++
Sbjct: 94 WKGYILHAKWLAECLRCHSLVSETGFLLPSIPSHEKKADDVVPHVE 139
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 18/102 (17%)
Query: 411 KEMKFLREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLF 469
++ + +R DL+ ST+++ Y + I WTG+ NR LR A +S Y L GL
Sbjct: 454 RQWRAVRVDLVGSTNAQ-------YPYAQIGWTGSKQYNRSLRQYAKDSLNYSLSSMGL- 505
Query: 470 PATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 511
+ +G + + A+ TE++VF L + EP ERN
Sbjct: 506 ---HDNGQNRWIAAQ------TEQDVFHHLKLTYREPWERNF 538
>gi|225559373|gb|EEH07656.1| high-affinity nickel transporter [Ajellomyces capsulatus G186AR]
Length = 694
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 100/204 (49%), Gaps = 18/204 (8%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVR 292
+Y AI I P+K++S +V LPG + E + G L +KD +
Sbjct: 344 AYSTAIASIAAYPYKLQSPKEVSALPGCESKIAVLFSEFNQSIDGTLEAANQLDKDPVLS 403
Query: 293 TISLFGEVWGIGPATAQKLYEKGH-RTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRH 349
+S F +WG+G TA+ Y H RT+DD+ + ++L+ Q++G+KYF ++ IPR
Sbjct: 404 VLSQFNNIWGVGAKTARDFYYHYHWRTIDDIIEQGWNTLSRVQQIGIKYFHELMAGIPRS 463
Query: 350 EVEQMERLLQKAGEEVLP-----------EVIILCGGSYRRGKASCGDLDVVIMHPDRKS 398
EVE + ++ + + V P E II+ G YRRGK GD+D+++ H D +
Sbjct: 464 EVESIADIVLRHAKLVRPHSQEDYDGKGIECIIV--GGYRRGKEFSGDVDIILSHRDERV 521
Query: 399 HKGFLSKYVKKLKEMKFLREDLIF 422
+ V L++ ++ L
Sbjct: 522 THNLVYDVVASLEQGGWITHTLAL 545
>gi|145246538|ref|XP_001395518.1| terminal deoxynucleotidyl transferase [Aspergillus niger CBS
513.88]
gi|134080236|emb|CAK97139.1| unnamed protein product [Aspergillus niger]
Length = 676
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 113/252 (44%), Gaps = 22/252 (8%)
Query: 189 SPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINI--YRALGEDRRSF-SYYKAIPVIEK 245
+PD+ H+ L P L+ +LI I R L D +Y +I I
Sbjct: 270 APDWVKEHVLYACLRSAP--LHPPNEGFINQLIKIRQIRELTLDEIGVRAYSTSIAAIAA 327
Query: 246 LPFKIESADQVKGLPGIGKSMQDHIQEI--VTTGKLSKLEHFEKDEKVRTISLFGEVWGI 303
P + +V LPG + + E TG LS + D +R ++ F +WG+
Sbjct: 328 YPHEFRRPSEVLTLPGCDTKIANLFYEYQESPTGTLSAASLLDTDPTLRILNTFYNIWGV 387
Query: 304 GPATAQKLYEKGHRT-LDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQK 360
G TA++LY H T LDD+ SLT Q++G+KY+D+ IPR EVEQ+ + +
Sbjct: 388 GAKTARELYYYRHWTDLDDIIEHGWSSLTRVQQIGVKYYDEFLIGIPRPEVEQIATTVTQ 447
Query: 361 AGEEVLP----------EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 410
V P + II+ G YRRGK CGD+D+++ HP K + V L
Sbjct: 448 HANLVRPTSFDNEEKGIQCIIV--GGYRRGKPLCGDVDLILTHPVESLTKNLVLDVVASL 505
Query: 411 KEMKFLREDLIF 422
+ ++ L
Sbjct: 506 ESSGWITHTLAL 517
>gi|393237285|gb|EJD44828.1| hypothetical protein AURDEDRAFT_124929 [Auricularia delicata
TFB-10046 SS5]
Length = 551
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 83/325 (25%), Positives = 138/325 (42%), Gaps = 74/325 (22%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKG----------- 258
N+ + E + N + GE+R SY +AI I+ P + + +K
Sbjct: 262 NQRLIEELAVIRNARKLEGEERSELSYSRAIASIKAQPAEFRTIKDIKARLLLVPYLLFP 321
Query: 259 ------LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY 312
+P +G + + I+E + G++S E E+ R++S V GIGP +A++LY
Sbjct: 322 HLSAQDVPFVGAKISNMIEEFIDHGRISDAEELRASERYRSLSALTTVHGIGPTSARELY 381
Query: 313 EKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIIL 372
+G R+LD L + G+ D + R+E E+++ + E V+ E ++L
Sbjct: 382 ARGLRSLDAL--------DRFYGVVVPDGYGGWV-RNE-EELDVQDEDGLESVIREALVL 431
Query: 373 ---CGGSYRRGKASCGDLD----VVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTH 425
R AS LD V+ + PDR + R DLIF+
Sbjct: 432 REELNKKQSRRTASARGLDKSLVVLRLAPDRTAR-----------------RVDLIFA-- 472
Query: 426 SEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRART 485
P + Y ++ WTG+ + R LRL A+ KG + +D+G+
Sbjct: 473 -----PPEAYWAAVVGWTGSIIFERDLRLAAKDKGLKFNDSGI----------------E 511
Query: 486 SLKFDTEKEVFDFLGFPWLEPHERN 510
+ E++VF G PW+EP RN
Sbjct: 512 VIPAKDERDVFAICGLPWIEPVWRN 536
>gi|409080765|gb|EKM81125.1| hypothetical protein AGABI1DRAFT_36756 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 578
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 87/348 (25%), Positives = 138/348 (39%), Gaps = 105/348 (30%)
Query: 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKG 315
+ LPG+G ++ I+E + G + + E + E+ R++SLF V+GIGP+ A+ LYE G
Sbjct: 240 ISKLPGVGSKVRSKIEEFIKNGTIEETETTLESERYRSLSLFNTVYGIGPSAARHLYELG 299
Query: 316 HRTLDDLK---------NEDSLTH----------------------------SQRLGLKY 338
R++ DL+ N L S ++ L
Sbjct: 300 LRSVGDLERYYDVPQGVNASQLDEIESQTFTPNGRPVPLKSFTEGNAKIPPISVKVALAL 359
Query: 339 FDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKS 398
+D+ T IPR E+E++ R++ E+V G +RRGK D+D+VI H D
Sbjct: 360 REDLNTPIPRAELEEIHRVIMSELEQVQAGCSSTVVGGHRRGKLESNDMDIVITHSDMHQ 419
Query: 399 HKGFLSKYVKKLKEMKFLREDLI--------FSTH------------------------- 425
G + KL E + R +LI F +H
Sbjct: 420 GTGSIKGMAAKLVERLYKRGELIHAKAYLSGFHSHNPLRTEHWDSLEKALTVFRLPASST 479
Query: 426 ------------SEEVY--------PRDIYAFGLIAWTGNDVLNRRLRLLAE-SKGYRLD 464
+ +Y P + Y ++ W+G+ + R LRL A+ KG + D
Sbjct: 480 ASQSQSSEAGSQTRRLYRRLDLIFAPPEAYWTAVVGWSGSRLFERDLRLWAKVEKGMKFD 539
Query: 465 DTGLFPATYGSGGKQGVRARTSLKF--DTEKEVFDFLGFPWLEPHERN 510
+GL R S F + E++VF LG W++P RN
Sbjct: 540 SSGL------------TRRHDSKLFVPENEEDVFKILGLEWVDPTLRN 575
>gi|345330196|ref|XP_001505901.2| PREDICTED: DNA nucleotidylexotransferase-like [Ornithorhynchus
anatinus]
Length = 513
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 121/564 (21%), Positives = 232/564 (41%), Gaps = 137/564 (24%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMD--LEALLQQVSKQ 76
F +F++EK + R + + G VE +LS+ VTH++A + +L+ ++ Q
Sbjct: 14 FNEFVLFILEKKMGTTRRAFLMELARRKGFRVESELSESVTHIVAENNSCSDVLEWLAVQ 73
Query: 77 HL---ARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSS 133
++ +RF+ ++ WL + +++G+ V E + + +L EN+ SQ QG+
Sbjct: 74 NVGDSSRFE--LLDISWLTECMKVGKPV-EAIGKHQLI--NENVLKLQRSQFQGD----- 123
Query: 134 DGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDFS 193
SSH P +P + A+ S
Sbjct: 124 ---SSH---------------------------PPPPETP------------SLATKQVS 141
Query: 194 SHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESA 253
+ + L N N+ T+ F L + + ++ +AI V++ LPF I
Sbjct: 142 QYACERRTTLNN---CNQKFTDAFEILAKDFEFRENEGICLAFMRAISVLKCLPFTIVRM 198
Query: 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPA-TAQKLY 312
++G+P +G ++ I+EI+ G+ S ++ DE+ R+ LF V+ +G +
Sbjct: 199 KDIEGVPWLGDQVKSIIEEIIEDGESSSVKAVLNDERYRSFQLFNSVFEVGLTDNGENGI 258
Query: 313 EKGHRTLDDLKNEDSLTHSQRL----------GLKYFDDIKTRIPRHEVEQMERLLQKAG 362
+G +TL+++ + +++ ++ G Y++D+ + + + E + + ++++A
Sbjct: 259 ARGFQTLNEVITDKNISLTKTTLSTSLWNYLPGFLYYEDLVSCVAKEEADAVYLIVKEAV 318
Query: 363 EEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL-KEMKFLREDLI 421
LPE ++ G +RRGK D+D +I P+ + L +K K+ L DL+
Sbjct: 319 RAFLPEALVTLTGGFRRGKKIGHDVDFLISDPESGQDEQLLPNIIKLWEKQELLLYYDLV 378
Query: 422 FST---------------HSEEVY------------------------------------ 430
ST H ++ +
Sbjct: 379 ESTFEKTKIPSRKVDAMDHFQKCFLILKLHHQKVDSGRYKPPPESKNHEAKNWKAIRVDL 438
Query: 431 ---PRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQGVRARTS 486
P + YA+ L+ WTG+ R LR A K LD+ L+ T +
Sbjct: 439 VMCPFEQYAYALLGWTGSRQFERDLRRYATHEKKMMLDNHALYDKT----------KKIF 488
Query: 487 LKFDTEKEVFDFLGFPWLEPHERN 510
LK ++E+++F LG ++EP ERN
Sbjct: 489 LKAESEEDIFTHLGLDYIEPWERN 512
>gi|121698402|ref|XP_001267810.1| terminal deoxynucleotidyl transferase, putative [Aspergillus
clavatus NRRL 1]
gi|119395952|gb|EAW06384.1| terminal deoxynucleotidyl transferase, putative [Aspergillus
clavatus NRRL 1]
Length = 733
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 100/210 (47%), Gaps = 17/210 (8%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVR 292
+Y +I + P I+ ++ LPG + E + G ++ + D +R
Sbjct: 355 AYSTSIAALAAYPSAIQRPAEILTLPGCDAKIAALFAEFQASADGTVAAAAALDSDPALR 414
Query: 293 TISLFGEVWGIGPATAQK-LYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDIKTRIPRH 349
T+ LFG +WG+G TA+ LY++ R LDDL +L+ Q++GLKY+D+ +PR
Sbjct: 415 TLHLFGNIWGVGAKTARDFLYQRHWRDLDDLVEHGWAALSRVQQIGLKYYDEFLAGVPRP 474
Query: 350 EVEQMERLLQKAGEEVLPEV--------IILCGGSYRRGKASCGDLDVVIMHPDRKSHKG 401
E E + R + V P +L GG YRRGK GD+D+V+ H D K
Sbjct: 475 ESEAIARTVAAHAARVRPHARYDARGLDCVLVGG-YRRGKPLSGDVDLVLSHRDESVTKN 533
Query: 402 FLSKYVKKLKEMKFLREDLIF---STHSEE 428
+ V+ L+ ++ L S+H ++
Sbjct: 534 LVLDLVRSLEAAGYITHTLALHMTSSHRDQ 563
>gi|388858580|emb|CCF47930.1| related to DNA polymerase mu [Ustilago hordei]
Length = 648
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 95/392 (24%), Positives = 155/392 (39%), Gaps = 91/392 (23%)
Query: 200 PSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESA------ 253
PS L++P N+ + ++ R G+ +Y +AI ++ PF+I
Sbjct: 266 PSPLFSP---NQPLIAELEQIRTERRLTGDTYSEMAYMRAISALKAYPFRIPDPLLDPAG 322
Query: 254 -----------DQVKGLPGIGKSMQDHIQEI---------------VTTGKLSKLEHFEK 287
+V+ L G+GK + I++ V G++ + + ++
Sbjct: 323 IYDRQLLEMRLGEVEKLKGVGKKVFSLIKQFYSLPAGLGEEEKRNRVEEGRIIEAKVIKR 382
Query: 288 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL--KNEDSLTH-SQRLGLKYFDDIKT 344
D V ++ F E++GIGP A++ Y G R+ D+ + + TH S R ++ D++
Sbjct: 383 DRAVYVMNSFTELYGIGPIGAREAYNSGARSFADVLDRGKSLATHLSARESVRILSDLRK 442
Query: 345 RIPRHEVEQMERLLQKAGEEVLPEVII----LCGGSYRRGKASCGDLDVVIMHPDRKSH- 399
I R E + + VL + + +CGG YRRGK DLD++I H +S
Sbjct: 443 PIGREECRSITAHIMDLVRSVLGDGVQVKHEICGG-YRRGKTQTYDLDIIIGHAQPRSRA 501
Query: 400 -----------KGFLSKYVKKLKEMKFLREDLIFSTHSEEVY------------------ 430
KG L+ V L DL + E V+
Sbjct: 502 LHLRLLNEMKGKGLLTHMVNISTPAATLDSDLHPAGAKEAVHIDIANIVVLPPLSGTNPN 561
Query: 431 -----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQ 479
P +Y ++ WTG+ R LRL A+ KGY + GL G +
Sbjct: 562 PVHRRVDLVFCPLKVYGATILGWTGSVTFERDLRLWAKQKGYSFNFDGL--THLGVAEEA 619
Query: 480 GVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 511
G+ ++ E EVFD LG W+ P RN
Sbjct: 620 GL-----VETQDESEVFDALGLQWMPPEWRNC 646
>gi|38566017|gb|AAH62590.1| POLM protein [Homo sapiens]
gi|119581528|gb|EAW61124.1| polymerase (DNA directed), mu, isoform CRA_d [Homo sapiens]
Length = 457
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 78/331 (23%), Positives = 140/331 (42%), Gaps = 57/331 (17%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N ++E L G + R ++ +A V++ LP + + Q++GLP G+
Sbjct: 153 NTGLSEALEILAEAAGFEGSEGRLLTFCRAASVLKALPSPVTTLSQLQGLPHFGEHSSRV 212
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 328
+QE++ G ++E + E+ +T+ LF +++G+G TA + Y +G RTLDDL+ + L
Sbjct: 213 VQELLEHGVCEEVERVRRSERYQTMKLFTQIFGVGVKTADRWYREGLRTLDDLREQPQKL 272
Query: 329 THSQRLGLKYFDD----IKTRIPRHEVEQMERLLQKAG----EEVLPEVIILCGGSYRRG 380
T Q+ + ++ R P G + LP+ +IL Y +
Sbjct: 273 TQQQKAAPPGPEHPSPAVRCRCPAAGGGGSCGAGPAWGHRHADRRLPQGLIL----YHQH 328
Query: 381 KASCGDLDVVIMHPDRKSHKGFLSKY--------------------VKKLKEMKFLREDL 420
+ SC + P R + + + + + K +R DL
Sbjct: 329 QHSCCE------SPTRLAQQSHMDAFERSFCIFRLPQPPGAAVGGSTRPCPSWKAVRVDL 382
Query: 421 IFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQ 479
+ V P + F L+ WTG+ + R LR + + KG L+ GLF
Sbjct: 383 V-------VAPVSQFPFALLGWTGSKLFQRELRRFSRKEKGLWLNSHGLF---------- 425
Query: 480 GVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+T + +E+++F LG +L P +RN
Sbjct: 426 DPEQKTFFQAASEEDIFRHLGLEYLPPEQRN 456
>gi|410903980|ref|XP_003965471.1| PREDICTED: DNA-directed DNA/RNA polymerase mu-like [Takifugu
rubripes]
Length = 522
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 107/208 (51%), Gaps = 1/208 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N +TE L ED R+ ++ ++ V++ LP + + ++GLP +G+
Sbjct: 152 NTVLTEALSLLAENAELNEEDGRAIAFRRSEAVLKALPKAVTNLADLRGLPCLGEHSLKI 211
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 328
I++++ G S++E + ++ + + + ++G+G TA + + G TL L+ +L
Sbjct: 212 IKDVLKDGVSSEVETTRQSDRYKALKVLTGIFGVGAKTADRWIKMGISTLHQLQASGQTL 271
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
+Q+ GL++++D+ + + E + + ++QK VLP +I G +RRGK + D+D
Sbjct: 272 NQAQQAGLEHYEDLNQPVAKAEADAIGDVVQKVVLSVLPGALITLIGGFRRGKPTGHDVD 331
Query: 389 VVIMHPDRKSHKGFLSKYVKKLKEMKFL 416
+I HP+ G L K LK FL
Sbjct: 332 FLITHPEEGREVGLLPKVASLLKSQGFL 359
Score = 42.4 bits (98), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 18/101 (17%)
Query: 411 KEMKFLREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLF 469
+ + +R DL+ S P +AF L+ WTG+ + R +R A K L L+
Sbjct: 438 RSWRAVRVDLVVS-------PISQFAFALLGWTGSKLFEREMRRWAGHEKAMSLSSHALY 490
Query: 470 PATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+ R L+ +E+E+F LG ++ P +RN
Sbjct: 491 ----------DTKQRRYLRAASEEEIFAHLGLEYIPPSQRN 521
>gi|336390911|dbj|BAK40154.1| DNA polymerase lambda [Aurelia sp. 1 sensu Dawson et al. (2005)]
Length = 345
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 91/171 (53%), Gaps = 14/171 (8%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N+ I E L+ Y ALG+ R Y KAI + K I S +Q + LP +G+ + +
Sbjct: 176 NEFIIEKLKVLLEEYTALGDKWRVMGYKKAITALSKCKEIIRSTEQARKLPHVGERLAEK 235
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN----- 324
I EI T +L +L++ D +V T+ F ++ G+GP A LY KG R++++L+
Sbjct: 236 IGEIAETRRLRRLDYV--DNRVETLKAFCDIHGVGPVVAADLYAKGFRSIEELRTYSDTP 293
Query: 325 -------EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE 368
+ +L+ QR+GLK+ +D + RIPR EV + L+++ + E
Sbjct: 294 ESCGPSAKVTLSRPQRIGLKHVEDFRQRIPREEVSVIAGLVREVCHRFINE 344
>gi|295659048|ref|XP_002790083.1| DNA polymerase beta [Paracoccidioides sp. 'lutzii' Pb01]
gi|226281985|gb|EEH37551.1| DNA polymerase beta [Paracoccidioides sp. 'lutzii' Pb01]
Length = 691
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 90/381 (23%), Positives = 164/381 (43%), Gaps = 41/381 (10%)
Query: 85 VIRYQWLEDSLRLGEKVSED---LYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSHRK 141
V++ WL++SL+ G V +YR + ENI + + S+ S+ ++
Sbjct: 171 VLKLSWLDESLKAGRAVPLAPYIIYRARKIAPPENIT--FPETVSNPASESATPRSTSKQ 228
Query: 142 KIKSSTEDVEHFQAESKGDVETNALSE----APNSP----------MSSESLTNTLSTAS 187
+ SS +E A++ T S A N P +
Sbjct: 229 RESSSKGILERAMADAASSSPTPIKSRLARRADNRPPIQNPPPKLVRETTEEHEAAEAPP 288
Query: 188 ASPDFSSHHI---TDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIE 244
+PD+ +++ S +PP N+ K+ I ++ +Y AI I
Sbjct: 289 RTPDWVRNNLIYACQRSAFLHPP--NEAFINQLDKIKKIRELTLDEIGVRAYSTAIASIA 346
Query: 245 KLPFKIESADQVKGLPGIGKSMQDHIQEIVTTG--KLSKLEHFEKDEKVRTISLFGEVWG 302
P+ ++SA +V LPG + E +G L + D + ++ F + G
Sbjct: 347 AYPYPLKSATEVSSLPGCEVKIATLFSEFNQSGDGTLESANQLDTDPVLSVLNKFNNILG 406
Query: 303 IGPATAQKLYEKGH-RTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQ 359
+G TA++ Y + H RT+DD+ + +SL+ Q++G+KYFD+ IPR EVE + +
Sbjct: 407 VGAKTAREFYYQHHWRTIDDIIEQGWNSLSRVQQIGIKYFDEFMDGIPRSEVESIADTVL 466
Query: 360 KAGEEVLPEVII---------LCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 410
+ + V PE + + G YRRGK CGD+D+++ H + + + V L
Sbjct: 467 RHAKLVRPESQVDYNGAAIEGIIVGGYRRGKECCGDVDLILTHRNERVTHYLVYDVVASL 526
Query: 411 KEMKFLREDL---IFSTHSEE 428
++ ++ L + ++H E+
Sbjct: 527 EQEGWITHTLALHLTNSHREQ 547
>gi|295321899|pdb|3LQC|B Chain B, X-Ray Crystal Structure Of Oxidized Xrcc1 Bound To Dna Pol
B Thumb Domain
Length = 200
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 107/199 (53%), Gaps = 32/199 (16%)
Query: 338 YFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRK 397
YF+D + RIPR E+ QM+ ++ +++ PE I GS+RRG S GD+DV++ HP+
Sbjct: 1 YFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPNFT 60
Query: 398 SHKG----FLSKYVKKLKEMKFLREDL------------IFSTHSEEVY----------P 431
S L + V++L++++F+ + L + S + E Y P
Sbjct: 61 SESSKQPKLLHRVVEQLQKVRFITDTLSKGETKFMGVCQLPSENDENEYPHRRIDIRLIP 120
Query: 432 RDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDT 491
+D Y G++ +TG+D+ N+ +R A KG+ +++ + P G GV A L D+
Sbjct: 121 KDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTGV-AGEPLPVDS 174
Query: 492 EKEVFDFLGFPWLEPHERN 510
E+++FD++ + + EP +R+
Sbjct: 175 EQDIFDYIQWRYREPKDRS 193
>gi|240282304|gb|EER45807.1| high-affinity nickel transporter [Ajellomyces capsulatus H143]
Length = 694
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 18/204 (8%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVR 292
+Y AI I P+K++S ++ LPG + E + G L +KD +
Sbjct: 344 AYSTAIASIAAYPYKLQSPKEISALPGCESKIAVLFSEFNQSIDGTLEAANQLDKDPVLS 403
Query: 293 TISLFGEVWGIGPATAQKLYEKGH-RTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRH 349
+S F +WG+G TA+ Y + RT+DD+ + ++L+ Q++G+KYF ++ IPR
Sbjct: 404 VLSQFNNIWGVGAKTARDFYYHYYWRTIDDIIEQGWNTLSRVQQIGIKYFHELMAGIPRS 463
Query: 350 EVEQMERLLQKAGEEVLP-----------EVIILCGGSYRRGKASCGDLDVVIMHPDRKS 398
EVE + ++ + + V P E II+ G YRRGK GD+D+++ H D +
Sbjct: 464 EVESIADIVLRHAKLVRPHSQEDYDGKGIECIIV--GGYRRGKEFSGDVDIILSHRDERV 521
Query: 399 HKGFLSKYVKKLKEMKFLREDLIF 422
+ V L++ ++ L
Sbjct: 522 THNLVYDVVASLEQGGWITHTLAL 545
>gi|325088443|gb|EGC41753.1| high-affinity nickel transporter [Ajellomyces capsulatus H88]
Length = 694
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 18/204 (8%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVR 292
+Y AI I P+K++S ++ LPG + E + G L +KD +
Sbjct: 344 AYSTAIASIAAYPYKLQSPKEISALPGCESKIAVLFSEFNQSIDGTLEAANQLDKDPVLS 403
Query: 293 TISLFGEVWGIGPATAQKLYEKGH-RTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRH 349
+S F +WG+G TA+ Y + RT+DD+ + ++L+ Q++G+KYF ++ IPR
Sbjct: 404 VLSQFNNIWGVGAKTARDFYYHYYWRTIDDIIEQGWNTLSRVQQIGIKYFHELMAGIPRS 463
Query: 350 EVEQMERLLQKAGEEVLP-----------EVIILCGGSYRRGKASCGDLDVVIMHPDRKS 398
EVE + ++ + + V P E II+ G YRRGK GD+D+++ H D +
Sbjct: 464 EVESIADIVLRHAKLVRPHSQEGYDGKGIECIIV--GGYRRGKEFSGDVDIILSHRDERV 521
Query: 399 HKGFLSKYVKKLKEMKFLREDLIF 422
+ V L++ ++ L
Sbjct: 522 THNLVYDVVASLEQGGWITHTLAL 545
>gi|71001074|ref|XP_755218.1| terminal deoxynucleotidyl transferase [Aspergillus fumigatus Af293]
gi|66852856|gb|EAL93180.1| terminal deoxynucleotidyl transferase, putative [Aspergillus
fumigatus Af293]
Length = 704
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 100/213 (46%), Gaps = 18/213 (8%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVR 292
+Y +I + P++I ++ LPG + E + G L+ + + D ++
Sbjct: 339 AYSTSIAALAAYPYQIRRPSEILTLPGCDAKIAALFAEFQASEHGTLAAADALDTDPVLK 398
Query: 293 TISLFGEVWGIGPATAQKLYEKGH-RTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRH 349
T+ LF +WG+G TA+ Y K R LDD+ DSL+ Q++GLKY+D+ +PR
Sbjct: 399 TLHLFWNIWGVGAKTARDFYYKRQWRDLDDIIEHGWDSLSRVQQIGLKYYDEFLQGVPRR 458
Query: 350 EVEQMERLLQKAGEEVLP---------EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHK 400
E E + + + V P E II+ G YRRGK GD+D+V+ H D K
Sbjct: 459 ETEAIAATITRHANRVRPHASYDGRGVECIIV--GGYRRGKELSGDVDLVLSHRDESVTK 516
Query: 401 GFLSKYVKKLKEMKFLREDLIF--STHSEEVYP 431
+ V L+ ++ L +T + E P
Sbjct: 517 NLVVDLVASLEAEGWITHTLALHMTTSNREQQP 549
>gi|159129305|gb|EDP54419.1| terminal deoxynucleotidyl transferase, putative [Aspergillus
fumigatus A1163]
Length = 704
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 100/213 (46%), Gaps = 18/213 (8%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVR 292
+Y +I + P++I ++ LPG + E + G L+ + + D ++
Sbjct: 339 AYSTSIAALAAYPYQIRRPSEILTLPGCDAKIAALFAEFQASEHGTLAAADALDTDPVLK 398
Query: 293 TISLFGEVWGIGPATAQKLYEKGH-RTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRH 349
T+ LF +WG+G TA+ Y K R LDD+ DSL+ Q++GLKY+D+ +PR
Sbjct: 399 TLHLFWNIWGVGAKTARDFYYKRQWRDLDDIIEHGWDSLSRVQQIGLKYYDEFLQGVPRR 458
Query: 350 EVEQMERLLQKAGEEVLP---------EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHK 400
E E + + + V P E II+ G YRRGK GD+D+V+ H D K
Sbjct: 459 ETEAIAATITRHANRVRPHASYDGRGVECIIV--GGYRRGKELSGDVDLVLSHRDESVTK 516
Query: 401 GFLSKYVKKLKEMKFLREDLIF--STHSEEVYP 431
+ V L+ ++ L +T + E P
Sbjct: 517 NLVVDLVASLEAEGWITHTLALHMTTSNREQQP 549
>gi|405119609|gb|AFR94381.1| beta DNA polymerase [Cryptococcus neoformans var. grubii H99]
Length = 569
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 83/346 (23%), Positives = 141/346 (40%), Gaps = 79/346 (22%)
Query: 231 RRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEK 290
RRS S K +P +I S + L G+G+ + I E + TG++++ + + +
Sbjct: 234 RRSLSMLKC--ESNSVPRRITSGKEALRLQGVGEKVATRIDEFLQTGEIAESQEILESLR 291
Query: 291 VRTISLFGEVWGIGPATAQKLYEKGH-RTLDDLKNE--------------DSLTHSQRLG 335
+ +F V+ IG A++LYE+ H RTL+D+K D R G
Sbjct: 292 FNALQIFASVYTIGHFRAKELYERHHCRTLEDVKRHFADMEKDGEAKKGRDKDKRRMRGG 351
Query: 336 LKYFD----------DIKTRIPRHEVEQMERLLQKAGEEVLPEV-IILCGGSYRRGKASC 384
+K ++ ++ +IPR EVE++ + E +P +CGG YRRGK
Sbjct: 352 MKEYEIVEEWMKLKSELDQKIPRKEVEEIAACVLDNLEAFIPSCEYTICGG-YRRGKTES 410
Query: 385 GDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFL-------REDLIFSTHSEEV-------- 429
D+D+V P G L +L E+ + R D+ ++ +
Sbjct: 411 SDVDIVFRPPKDDQDIGLLRALYLRLSELGIITHVLRDSRPDVTHRDPNQPIRAAAQNFD 470
Query: 430 -------------------------YPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLD 464
PRD YA +++WTG+ + R L+ AE++
Sbjct: 471 NLDKAFVIFKLPGEGRLHRRVDLISAPRDRYASAVLSWTGSMMFERDLKRYAENETGHKF 530
Query: 465 DTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
GL G + +TE+E+F++LG ++ P RN
Sbjct: 531 RAGLIKIATGE----------EINLETEREIFNYLGLRYIPPELRN 566
>gi|315050470|ref|XP_003174609.1| DNA polymerase lambda [Arthroderma gypseum CBS 118893]
gi|311339924|gb|EFQ99126.1| DNA polymerase lambda [Arthroderma gypseum CBS 118893]
Length = 680
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 22/205 (10%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEK------D 288
+Y +I + P+K++S ++V LPG ++ I + T K SK E D
Sbjct: 277 AYSTSIASLAAYPYKLKSPEEVLSLPGC----ENRIANLFTEWKHSKDGTIESTLPLTTD 332
Query: 289 EKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTR 345
+R I LF +WG+G +A+ Y ++ R LDD+ + D+L+ Q++G+KY+++ T
Sbjct: 333 PALRVIHLFYNIWGVGAKSARDFYYQRQWRDLDDIVEQGWDTLSRVQQIGVKYYEEFLTG 392
Query: 346 IPRHEVEQMERLLQKAGEEVLPEV--------IILCGGSYRRGKASCGDLDVVIMHPDRK 397
+PR E E + + + + + V P+ I+ GG YRRGK GD+DV++ H D +
Sbjct: 393 VPREETESIAKTILRHAKLVRPDADFDGKGVECIIVGG-YRRGKEESGDVDVILTHQDER 451
Query: 398 SHKGFLSKYVKKLKEMKFLREDLIF 422
+ V L++ ++ L
Sbjct: 452 VTSNLVFDVVASLEQEGWIMHTLAL 476
>gi|302654102|ref|XP_003018863.1| terminal deoxynucleotidyl transferase, putative [Trichophyton
verrucosum HKI 0517]
gi|291182544|gb|EFE38218.1| terminal deoxynucleotidyl transferase, putative [Trichophyton
verrucosum HKI 0517]
Length = 682
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 87/376 (23%), Positives = 168/376 (44%), Gaps = 45/376 (11%)
Query: 85 VIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSHRKKIK 144
VIR W+ +SL+ E + + + + EG I + ++ ++++ + ++
Sbjct: 110 VIRLSWVHESLKAKEPLPFEPFTVY---EGRKIPKPPTASLEKALSSTTSPDRCAAQETA 166
Query: 145 SSTEDVEHFQAESKGDVETNALSEAPNSPMSS-ESLTNTLSTASASPDF---SSHHITDP 200
++GD ++++ P+SP ++ + + S P S+ +
Sbjct: 167 LYQSPGSSILERARGDTPSSSMRFIPSSPSRRVKATSGSPSVIKQRPKLYRASTSDFEEE 226
Query: 201 SLLYNPPDLNKNI---------------TEIFGKLINI--YRALGEDRRSF-SYYKAIPV 242
+ + +PP+ +N E G+L+ I R L D +Y +I
Sbjct: 227 ASIPDPPEWVRNKVVYSCCRSTPLHSPNAEFIGQLLKIKKIRELTLDEVGVRAYSTSIAS 286
Query: 243 IEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSK---LEH---FEKDEKVRTISL 296
+ P+K++S ++V LPG ++ I + T K SK LE D ++ I+
Sbjct: 287 LSAYPYKLKSPEEVLSLPGC----ENRIANLFTEWKHSKDGILESTLPLTTDPALKVINS 342
Query: 297 FGEVWGIGPATAQKLY-EKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRHEVEQ 353
F +WG+G +A+ Y +K R LDD+ + D+L+ Q++G+KY+++ T IP+ E
Sbjct: 343 FHNIWGVGAKSARDFYYQKQWRDLDDIVEQGWDTLSRVQQIGVKYYEEFLTGIPKEETVS 402
Query: 354 MERLLQKAGEEVLPE-------VIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY 406
+ + + V P+ V I+ GSYRRGK GD+DV++ H D + +
Sbjct: 403 IANTILHHAKLVRPDSDFDGEGVEIIIVGSYRRGKEESGDVDVILTHRDERVTSNLVFDV 462
Query: 407 VKKLKEMKFLREDLIF 422
V L++ ++ L
Sbjct: 463 VASLEQEGWITHTLAL 478
>gi|212532843|ref|XP_002146578.1| terminal deoxynucleotidyl transferase, putative [Talaromyces
marneffei ATCC 18224]
gi|210071942|gb|EEA26031.1| terminal deoxynucleotidyl transferase, putative [Talaromyces
marneffei ATCC 18224]
Length = 710
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 99/202 (49%), Gaps = 16/202 (7%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVR 292
+Y +I + P+++ + +V LPG + + E + GKL + D +
Sbjct: 358 AYSTSIAALAAYPYELRTPVEVLTLPGCDTKIANLFVEFRNSADGKLEAANVLDSDPVIN 417
Query: 293 TISLFGEVWGIGPATAQKLY-EKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRH 349
TI F +WG+G TA+ Y ++ R LDD+ +SL+ Q++GLKY+D+ IPR
Sbjct: 418 TIHQFYNIWGVGAKTARDFYYQRQWRDLDDVIEHGWNSLSRVQQIGLKYYDEFLAGIPRA 477
Query: 350 EVEQMERLLQKAGEEVLP---------EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHK 400
EV ++ + + + V P E II+ G YRRGK + GD+D+++ H D + K
Sbjct: 478 EVAEIAKTIHRHANMVRPGCEYDGQGIECIIV--GGYRRGKETSGDIDLILSHRDERVTK 535
Query: 401 GFLSKYVKKLKEMKFLREDLIF 422
+ V L+ ++ L
Sbjct: 536 DLVIDVVGSLESEGWITHTLAL 557
>gi|71005486|ref|XP_757409.1| hypothetical protein UM01262.1 [Ustilago maydis 521]
gi|14456135|emb|CAC41651.1| putative DNA polymerase X [Ustilago maydis]
gi|46096415|gb|EAK81648.1| conserved hypothetical protein [Ustilago maydis 521]
Length = 749
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 129/279 (46%), Gaps = 45/279 (16%)
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I++ + ++ + K+++ R +F V+GIG A++ + G TL+ L+ E SL
Sbjct: 467 IKQRLLLDRVDAINSLSKEDRARV--MFQRVYGIGATKAERFVQAGFLTLEQLR-EASLE 523
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+QR+GL + +DI+ IPR E +Q +L V ++ I GS+RRG DLD
Sbjct: 524 RAQRIGLNHMNDIECLIPRSESQQWLDVLLDVVRSVDSKLSIELLGSFRRGDHYSSDLDF 583
Query: 390 VIMHPDRKSHK-----------------GFLSKYVKKLKEMKFLREDLI----------- 421
V+ HPD + L+ + ++++ L +DL+
Sbjct: 584 VLFHPDVIEMRLPRPDNPSKSDPHPLAATLLNNVIVQMRKRNLLADDLLAHGPLAVKGIV 643
Query: 422 -FSTHSE------EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYG 474
S ++ P AF +A TG+ L LR A+SKG+ L++ GL G
Sbjct: 644 RLSATNKARRIDLNFAPFIRRAFYTLAKTGDADLMVHLRAKAKSKGWALNEYGL-----G 698
Query: 475 SGGKQGVRARTSL--KFDTEKEVFDFLGFPWLEPHERNL 511
+ G T+L + E+++F FL P+L+P ER+
Sbjct: 699 PPNQNGSAWTTNLLQEATDERQIFAFLNVPYLKPKERSF 737
>gi|317157314|ref|XP_001826392.2| hypothetical protein AOR_1_1366054 [Aspergillus oryzae RIB40]
Length = 1196
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 114/248 (45%), Gaps = 19/248 (7%)
Query: 189 SPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINI--YRALGEDRRSF-SYYKAIPVIEK 245
+PD+ +HI + P L+ +L+ I R L D +Y +I I
Sbjct: 270 APDWVKNHILYACMRSAP--LHPPNERFINQLVKIRRIRELTLDEIGVRAYSTSIASIAA 327
Query: 246 LPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVRTISLFGEVWGI 303
P++ ++ LPG + + E + G + + D +R + F +WG+
Sbjct: 328 YPYEFRRPSEILTLPGCDTKIANLFAEYQQSENGTIEAAAALDTDPVLRVLHEFYNIWGV 387
Query: 304 GPATAQKLYE-KGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQK 360
G TA+ Y + R LDD+ +SL+ Q++G+KY+D+ IPRHEVE + +++ +
Sbjct: 388 GAKTARDFYYYRQWRDLDDVVEHGWNSLSRVQQIGVKYYDEFLQGIPRHEVEDIAKIIHR 447
Query: 361 AGEEVLPEV--------IILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKE 412
V P+ I+ GG YRRGK + GD+D+V+ H D K + V L+
Sbjct: 448 HANLVRPDARYDGRGVECIVVGG-YRRGKEASGDVDLVLYHRDESVTKNLVVDIVGSLES 506
Query: 413 MKFLREDL 420
++ L
Sbjct: 507 EGWITHTL 514
>gi|255935563|ref|XP_002558808.1| Pc13g03710 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211583428|emb|CAP91440.1| Pc13g03710 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 662
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 117/259 (45%), Gaps = 22/259 (8%)
Query: 183 LSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINI--YRALGEDRRSF-SYYKA 239
+ A PD+ H+ L P L+ + +L+ I R L D +Y +
Sbjct: 261 VENAPPQPDWVRDHVVYACLRSAP--LHPPNEDFISQLVKIRRIRELTLDEIGVRAYSTS 318
Query: 240 IPVIEKLPFKIESADQVKGLPGIGKSMQD---------HIQEIVTTGKLSKLEHFEKDEK 290
I + P I+ ++ LPG + D + G ++ E E D
Sbjct: 319 IAALAAYPHPIQRPSEILALPGCNAKIADLFFQFQQHGGCEHTDDDGNVAAAEALETDPM 378
Query: 291 VRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPR 348
+R ++ F ++WG+G TA+ Y++G R LDD+ D+L+ Q++G+K++++ +PR
Sbjct: 379 LRVLNSFYQIWGVGAKTARDFYQRGWRDLDDIVEHGWDTLSRVQQIGVKFYEEFLEGVPR 438
Query: 349 HEVEQMERLLQK-----AGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFL 403
E E + +++ GEE ++ GG YRRGK GD+D+V+ H D + +
Sbjct: 439 AESEGIASVIRDHAGRVRGEEGNGIECVIVGG-YRRGKELSGDVDIVVSHRDDAVTRNLV 497
Query: 404 SKYVKKLKEMKFLREDLIF 422
V L+ +++ L
Sbjct: 498 VDVVASLEAERYITHTLAL 516
>gi|260817830|ref|XP_002603788.1| hypothetical protein BRAFLDRAFT_59678 [Branchiostoma floridae]
gi|229289111|gb|EEN59799.1| hypothetical protein BRAFLDRAFT_59678 [Branchiostoma floridae]
Length = 430
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 82/140 (58%), Gaps = 6/140 (4%)
Query: 293 TISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDIKTRIPRHE 350
T+ LF ++G+G ATA+K YE+G RTLDD++N+ SL Q +GL+ + D+ T + E
Sbjct: 157 TMQLFTGIFGVGSATARKWYERGFRTLDDIRNDSTLSLKKDQTIGLELYQDLNTPVTLAE 216
Query: 351 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 410
+ ++ +++ +++LP ++ G +RRGK D+D++I HP G LS + KL
Sbjct: 217 ADIIQEMVRAEVQKLLPGATVVLTGGFRRGKTKGHDVDLLISHPTEGKETGLLSAVLAKL 276
Query: 411 KEMKFLREDLIFSTHSEEVY 430
+E ++ L + T S Y
Sbjct: 277 RE----KDLLAYETTSANTY 292
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 11/84 (13%)
Query: 429 VYPRDIYAFGLIAWTGNDVLNRRLRLLAESK-GYRLDDTGLFPATYGSGGKQGVRARTSL 487
+ P YA+ L+ WTG+ NR LRL A+++ +L + L Y S Q + A
Sbjct: 357 IAPASQYAYALVGWTGSKHFNRSLRLYADNEMNMKLTNHVL----YDSVKNQYLPA---- 408
Query: 488 KFDTEKEVFDFLGFPWLEPHERNL 511
+E++VF L P+ EP ERN
Sbjct: 409 --SSEEDVFLHLQLPYREPAERNC 430
>gi|258574165|ref|XP_002541264.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237901530|gb|EEP75931.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 739
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 99/202 (49%), Gaps = 16/202 (7%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVR 292
+Y +I I P+ +++ ++V +PG + + E + G L + D
Sbjct: 345 AYSTSIAAIAAYPYPLQTPEEVLTIPGCETRIANWFAEWKQSPDGSLEAANQLDTDPVYS 404
Query: 293 TISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRH 349
T++LF +WGIG +A+ Y + R LDD+ + DSL+ Q++G+KY+D+ IPR
Sbjct: 405 TLNLFYNIWGIGAKSARDFYYHRQWRDLDDVVEQGWDSLSRVQQIGVKYYDEFMEGIPRT 464
Query: 350 EVEQMERLLQKAGEEVLP---------EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHK 400
EVE + +++ + V P E II+ G YRRGK GD+D+++ H D
Sbjct: 465 EVEYIAKVVLEHARRVRPGSDYDGKGIECIIV--GGYRRGKERSGDVDMILSHRDEAVTH 522
Query: 401 GFLSKYVKKLKEMKFLREDLIF 422
+ V L++ ++ L
Sbjct: 523 NLVYDVVASLEQEGWITHTLAL 544
>gi|58261266|ref|XP_568043.1| beta DNA polymerase [Cryptococcus neoformans var. neoformans JEC21]
gi|57230125|gb|AAW46526.1| beta DNA polymerase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 556
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 83/336 (24%), Positives = 141/336 (41%), Gaps = 71/336 (21%)
Query: 234 FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRT 293
SY +++ +++ +P +I S + L G+G+ + I E + TG++++ + +
Sbjct: 230 LSYRRSLSMLKSVPRRITSGKEALSLQGVGEKVATRIDEFLQTGEIAESQEILASSRFNA 289
Query: 294 ISLFGEVWGIGPATAQKLYEKGH-RTLDDLKNEDSLTHS--------------QRLGLKY 338
+ F V+ IG A++LYE+ H RTLDD+K + R G+K
Sbjct: 290 LQNFASVYTIGHFRAKELYERHHCRTLDDVKRHFADMEKDGEAKQGRGKDKRRMRGGMKE 349
Query: 339 FDDIKTRIP-------RHEVEQMERLLQKAGEEVLPEV-IILCGGSYRRGKASCGDLDVV 390
+ ++ + + EVE++ + E +P +CGG YRRGKA D+D+V
Sbjct: 350 HEIVEEWMKLKNELDQKKEVEEIAACVLDNLEAFIPGCEYTICGG-YRRGKAQSSDVDIV 408
Query: 391 IMHPDRKSHKGFLSKYVKKLKEMKFLREDL--------------------------IFST 424
P G L +L E+ + L IF
Sbjct: 409 FRPPKDDQDIGLLRALYLRLSELGIVTHVLQVTHRDSNQPIRAAAQNFDNLDKAFVIFKL 468
Query: 425 HSEE---------VYPRDIYAFGLIAWTGNDVLNRRLRLLAES-KGYRLDDTGLFPATYG 474
E PRD YA +++WTG+ + R L+ AE+ KG++ GL G
Sbjct: 469 PGEGRLHRRVDLISAPRDRYASAVLSWTGSMMFERDLKRYAENEKGHKF-RAGLIKIATG 527
Query: 475 SGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+ +TE+E+FD+LG ++ P RN
Sbjct: 528 E----------EINLETEREIFDYLGLRYIPPELRN 553
>gi|134115703|ref|XP_773565.1| hypothetical protein CNBI1790 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256191|gb|EAL18918.1| hypothetical protein CNBI1790 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 556
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 83/336 (24%), Positives = 141/336 (41%), Gaps = 71/336 (21%)
Query: 234 FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRT 293
SY +++ +++ +P +I S + L G+G+ + I E + TG++++ + +
Sbjct: 230 LSYRRSLSMLKSVPRRITSGKEALSLQGVGEKVATRIDEFLQTGEIAESQEILASSRFNA 289
Query: 294 ISLFGEVWGIGPATAQKLYEKGH-RTLDDLKNEDSLTHS--------------QRLGLKY 338
+ F V+ IG A++LYE+ H RTLDD+K + R G+K
Sbjct: 290 LQNFASVYTIGHFRAKELYERHHCRTLDDVKRHFADMEKDGEAKQGRGKDKRRMRGGMKE 349
Query: 339 FDDIKTRIP-------RHEVEQMERLLQKAGEEVLPEV-IILCGGSYRRGKASCGDLDVV 390
+ ++ + + EVE++ + E +P +CGG YRRGKA D+D+V
Sbjct: 350 HEIVEEWMKLKNELDQKKEVEEIAACVLDNLEAFIPGCEYTICGG-YRRGKAQSSDVDIV 408
Query: 391 IMHPDRKSHKGFLSKYVKKLKEMKFLREDL--------------------------IFST 424
P G L +L E+ + L IF
Sbjct: 409 FRPPKDDQDIGLLRALYLRLSELGIVTHVLQVTHRDSNQPIRAAAQNFDNLDKAFVIFKL 468
Query: 425 HSEE---------VYPRDIYAFGLIAWTGNDVLNRRLRLLAES-KGYRLDDTGLFPATYG 474
E PRD YA +++WTG+ + R L+ AE+ KG++ GL G
Sbjct: 469 PGEGRLHRRVDLISAPRDRYASAVLSWTGSMMFERDLKRYAENEKGHKF-RAGLIKIATG 527
Query: 475 SGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+ +TE+E+FD+LG ++ P RN
Sbjct: 528 E----------EINLETEREIFDYLGLRYIPPELRN 553
>gi|194374793|dbj|BAG62511.1| unnamed protein product [Homo sapiens]
Length = 232
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 67/107 (62%), Gaps = 2/107 (1%)
Query: 259 LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRT 318
+PGIGK M + I EI+ +G L KL+H E V + LF +WG G TAQ Y++G R+
Sbjct: 25 IPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRS 82
Query: 319 LDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEV 365
L+D++++ SLT Q +GLK++ D R+PR E ++E+ + + V
Sbjct: 83 LEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVSRCPRAV 129
>gi|83775136|dbj|BAE65259.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 673
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 113/249 (45%), Gaps = 17/249 (6%)
Query: 189 SPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINI--YRALGEDRRSF-SYYKAIPVIEK 245
+PD+ +HI + P L+ +L+ I R L D +Y +I I
Sbjct: 270 APDWVKNHILYACMRSAP--LHPPNERFINQLVKIRRIRELTLDEIGVRAYSTSIASIAA 327
Query: 246 LPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVRTISLFGEVWGI 303
P++ ++ LPG + + E + G + + D +R + F +WG+
Sbjct: 328 YPYEFRRPSEILTLPGCDTKIANLFAEYQQSENGTIEAAAALDTDPVLRVLHEFYNIWGV 387
Query: 304 GPATAQKLYE-KGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQK 360
G TA+ Y + R LDD+ +SL+ Q++G+KY+D+ IPRHEVE + +++ +
Sbjct: 388 GAKTARDFYYYRQWRDLDDVVEHGWNSLSRVQQIGVKYYDEFLQGIPRHEVEDIAKIIHR 447
Query: 361 AGEEVLPE-------VIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEM 413
V P+ V + G YRRGK + GD+D+V+ H D K + V L+
Sbjct: 448 HANLVRPDARYDGRGVECIVVGGYRRGKEASGDVDLVLYHRDESVTKNLVVDIVGSLESE 507
Query: 414 KFLREDLIF 422
++ L
Sbjct: 508 GWITHTLAL 516
>gi|302404606|ref|XP_003000140.1| DNA polymerase mu [Verticillium albo-atrum VaMs.102]
gi|261360797|gb|EEY23225.1| DNA polymerase mu [Verticillium albo-atrum VaMs.102]
Length = 262
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 108/258 (41%), Gaps = 55/258 (21%)
Query: 307 TAQKLYEKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEE 364
TA++ Y+KG R LDDL D L+ Q++G+KY+D+ IPR EVE + + + +E
Sbjct: 2 TAREFYKKGWRDLDDLVEYGWDRLSRVQQIGVKYYDEFLQPIPRLEVEAIAATILQQAQE 61
Query: 365 VLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFST 424
+ P + G +RRGK S GD+DV++ H D + F+ + V L++ + + L ST
Sbjct: 62 IEPGFQLTIVGGHRRGKKSSGDVDVILSHADEDATYRFIERLVASLEKARLITHTLTLST 121
Query: 425 HSEE--------------------------------------------------VYPRDI 434
H+ E + P
Sbjct: 122 HNSERDQKPLTWKADAARTKGAGFDTLDKAMVVWQEPGSEDSPSGRPHRRVDIIISPWKT 181
Query: 435 YAFGLIAWTGNDVLNRRLRLLAESK-GYRLDDTGLFPATYGSGG--KQGVRARTSLKFDT 491
++ W+G R +R + + GY+ D +G+ + GS ++G R
Sbjct: 182 VGCAVLGWSGGTTFQRDVRRYCKKELGYKFDSSGIRKRSDGSWVDLERGSRGTAPDMLTA 241
Query: 492 EKEVFDFLGFPWLEPHER 509
E+ VF+ L W P +R
Sbjct: 242 EQRVFEGLRLDWRPPEQR 259
>gi|403278454|ref|XP_003930820.1| PREDICTED: DNA-directed DNA/RNA polymerase mu isoform 2 [Saimiri
boliviensis boliviensis]
Length = 457
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/338 (23%), Positives = 136/338 (40%), Gaps = 71/338 (21%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N ++TE L G + R ++ +A V++ LP + + Q++GLP +G+
Sbjct: 153 NTSLTEALETLAEAAGFEGSEGRLLAFCRAASVLKALPSPVTTLSQLQGLPQLGEHSSRV 212
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
+QE++ G ++E E+ +T+ LF +V+G+G TA + Y +G RTLDDL+ +
Sbjct: 213 VQELLEHGVCEEVERVRHSERYQTMKLFTQVFGVGVRTADRWYREGLRTLDDLQEQP--- 269
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG---- 385
++ Q +++ E P V C + G SCG
Sbjct: 270 -------------------QKLTQQQKVAPPGPEHPSPAVRCRCPAAG--GGRSCGAGHA 308
Query: 386 ----------DLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIF------------- 422
+++ H SH ++ ++ F R IF
Sbjct: 309 WGHRHTDRRLPQGLILYHQHHHSHWESPTRLAQQSHMDAFERSFCIFRLPQAPGAAAGGT 368
Query: 423 --STHSEE-------VYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPAT 472
S S + V P + F L+ WTG+ + R LR + + KG L+ GLF
Sbjct: 369 PRSCPSWKAVRVDLVVVPISQFPFALLGWTGSKLFQRELRRFSRKEKGLWLNSHGLF--- 425
Query: 473 YGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+T +E+++F LG +L P +RN
Sbjct: 426 -------DPEQKTFFHASSEEDIFRHLGLEYLPPEQRN 456
>gi|297680550|ref|XP_002818051.1| PREDICTED: DNA-directed DNA/RNA polymerase mu isoform 2 [Pongo
abelii]
Length = 457
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/328 (23%), Positives = 139/328 (42%), Gaps = 51/328 (15%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N ++E L G + R ++ +A V++ LP + + Q++GLP +G+
Sbjct: 153 NTGLSEALETLAEAAGFEGSEGRLLTFCRAASVLKALPSPVTTLSQLQGLPHLGEHSSRV 212
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 328
+QE++ G ++E + E+ +T+ LF +++G+G TA + Y +G RTLDDL+ + L
Sbjct: 213 VQELLEHGVCEEVERVRRSERYQTMKLFTQIFGVGVRTADRWYREGLRTLDDLREQPQKL 272
Query: 329 THSQRLGLKYFDD----IKTRIPRHEVEQMERLLQKAG----EEVLPEVIILCGGSYRRG 380
T Q+ + ++ R P G + LP+ +IL Y +
Sbjct: 273 TQQQKAAPPGPEHPSPAVRCRCPAAGGGGSCGAGPAWGHRHADRRLPQGLIL----YHQH 328
Query: 381 KASCGDLDVVIMHPDRKSHKGFLSK-----------------YVKKLKEMKFLREDLIFS 423
+ S + + ++SH + + K +R DL+
Sbjct: 329 QHSSWESPTCLA---QQSHMDAFERSFCIFRLPQPPGATVGGSTRPCPSWKAVRVDLV-- 383
Query: 424 THSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQGVR 482
V P + F L+ WTG+ + R LR + + KG L+ GLF
Sbjct: 384 -----VAPISQFHFALLGWTGSKLFQRELRRFSRKEKGLWLNSHGLF----------DPE 428
Query: 483 ARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+T +E+++F LG +L P +RN
Sbjct: 429 QKTFFHAASEEDIFRHLGLEYLPPEQRN 456
>gi|405952072|gb|EKC19924.1| DNA polymerase mu [Crassostrea gigas]
Length = 481
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 97/182 (53%), Gaps = 3/182 (1%)
Query: 232 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
R+ ++ +A V++ L F + S DQ+KG +GK +Q +Q I+ G ++E D
Sbjct: 122 RALAWRRASCVLKSLKFPLTSIDQLKGAKDVGKHVQKVLQSILDHGTSDEVEKVRNDPWY 181
Query: 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NEDSLTHSQRLGLKYFDDIKTRIPRHE 350
+ + +F +V+G G TAQ+ EKG T+D+++ N R GL + +++ + R E
Sbjct: 182 KKMKIFTKVFGAGTKTAQEWIEKGWTTVDEVRQNYTKGDWRLRFGLAFHEELMELVTRLE 241
Query: 351 VEQMERLLQKAGEEVLPEVII-LCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKK 409
+ + ++ E +LP + + LCGG ++RGK D+D++ H GFL + +
Sbjct: 242 ADNFTKFIKHQCETILPGISVELCGG-FKRGKTHGHDIDLLFTHQSTGKEVGFLPRLLSV 300
Query: 410 LK 411
L+
Sbjct: 301 LE 302
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 46/96 (47%), Gaps = 18/96 (18%)
Query: 417 REDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAE-SKGYRLDDTGLFPATYGS 475
R DLI + P D Y + L+ WTG+ NR +R A+ + Y + GL+ T
Sbjct: 403 RVDLIIA-------PYDQYFYALVGWTGSKQFNRDIRTYAKRTHNYAMTSHGLYDLT--- 452
Query: 476 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 511
R SL +EKE+FD LG P+ P ERN
Sbjct: 453 -------KRKSLPAKSEKEIFDILGVPYFPPEERNC 481
>gi|238493687|ref|XP_002378080.1| terminal deoxynucleotidyl transferase, putative [Aspergillus flavus
NRRL3357]
gi|220696574|gb|EED52916.1| terminal deoxynucleotidyl transferase, putative [Aspergillus flavus
NRRL3357]
Length = 673
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 113/249 (45%), Gaps = 17/249 (6%)
Query: 189 SPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINI--YRALGEDRRSF-SYYKAIPVIEK 245
+PD+ +HI + P L+ +L+ I R L D +Y +I I
Sbjct: 270 APDWVKNHILYACMRSAP--LHPPNERFINQLVKIRRIRELTLDEIGVRAYSTSIASIAA 327
Query: 246 LPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVRTISLFGEVWGI 303
P++ ++ LPG + + E + G + + D +R + F +WG+
Sbjct: 328 YPYEFRRPSEILTLPGCDTKIANLFAEYQQSEDGTIEAAAALDTDPVLRVLHEFYNIWGV 387
Query: 304 GPATAQKLYE-KGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQK 360
G TA+ Y + R LDD+ +SL+ Q++G+KY+D+ IPRHEVE + +++ +
Sbjct: 388 GAKTARDFYYYRQWRDLDDVVEHGWNSLSRVQQIGVKYYDEFLQGIPRHEVEDIAKIIHR 447
Query: 361 AGEEVLPE-------VIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEM 413
V P+ V + G YRRGK + GD+D+V+ H D K + V L+
Sbjct: 448 HANLVRPDARYDGRGVECIVVGGYRRGKEASGDVDLVLSHRDESVTKNLVVDIVGSLESE 507
Query: 414 KFLREDLIF 422
++ L
Sbjct: 508 GWITHTLAL 516
>gi|391869447|gb|EIT78645.1| DNA polymerase IV [Aspergillus oryzae 3.042]
Length = 673
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 113/249 (45%), Gaps = 17/249 (6%)
Query: 189 SPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINI--YRALGEDRRSF-SYYKAIPVIEK 245
+PD+ +HI + P L+ +L+ I R L D +Y +I I
Sbjct: 270 APDWVKNHILYACMRSAP--LHPPNERFINQLVKIRRIRELTLDEIGVRAYSTSIASIAA 327
Query: 246 LPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVRTISLFGEVWGI 303
P++ ++ LPG + + E + G + + D +R + F +WG+
Sbjct: 328 YPYEFRRPSEILTLPGCDTKIANLFAEYQQSEDGTIEAAAALDTDPVLRVLHEFYNIWGV 387
Query: 304 GPATAQKLYE-KGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQK 360
G TA+ Y + R LDD+ +SL+ Q++G+KY+D+ IPRHEVE + +++ +
Sbjct: 388 GAKTARDFYYYRQWRDLDDVVEHGWNSLSRVQQIGVKYYDEFLQGIPRHEVEDIAKIIHR 447
Query: 361 AGEEVLPE-------VIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEM 413
V P+ V + G YRRGK + GD+D+V+ H D K + V L+
Sbjct: 448 HANLVRPDARYDGRGVECIVVGGYRRGKEASGDVDLVLSHRDESVTKNLVVDIVGSLESE 507
Query: 414 KFLREDLIF 422
++ L
Sbjct: 508 GWITHTLAL 516
>gi|119192864|ref|XP_001247038.1| hypothetical protein CIMG_00809 [Coccidioides immitis RS]
Length = 737
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 97/202 (48%), Gaps = 16/202 (7%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVR 292
+Y +I I P+ +++ ++V +PG + + E + G L + D
Sbjct: 347 AYSTSIAAIAAYPYPLQTPEEVLTIPGCETRIANWFAEWKQSPDGILEAANQLDTDPVYS 406
Query: 293 TISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRH 349
T+++F +WG+G +A+ Y + R LDD+ DSL+ Q++G+KY+D+ IPR
Sbjct: 407 TLNMFYNIWGVGTKSARDFYYHRNWRDLDDVVEHGWDSLSRVQQIGVKYYDEFMEGIPRA 466
Query: 350 EVEQMERLLQKAGEEVLP---------EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHK 400
EVE + R++ + P E II+ G YRRGK GD+D+++ H D
Sbjct: 467 EVESISRVVLEHARRARPGSDFDEKGIECIIV--GGYRRGKERSGDVDIILSHRDEGVTH 524
Query: 401 GFLSKYVKKLKEMKFLREDLIF 422
+ V L+E ++ L
Sbjct: 525 NLVYDVVSSLEEDGWITHTLAL 546
>gi|91201380|emb|CAJ74440.1| strongly similar to DNA polymerase beta family [Candidatus Kuenenia
stuttgartiensis]
Length = 578
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 94/332 (28%), Positives = 149/332 (44%), Gaps = 54/332 (16%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESA---DQVKGLPGIGKS 265
N + +FGK+ ++ GE+ R SY KA VIE L IE+ D++ +PGIGK
Sbjct: 3 NHEVALLFGKIADVLELKGENTFRINSYRKAARVIEDLTEDIEALARDDKLTNIPGIGKG 62
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKN 324
D I E +TTGK+SK E K T++L ++ G+GP T L E G L D++N
Sbjct: 63 TADKIIEYITTGKMSKYEEVAKGISEETVALM-QIPGLGPKTVAMLNKELGIVNLVDIEN 121
Query: 325 ---EDSLTHSQRLGLKYFDDIKTRIPRHEVEQ-----------MERLLQKAGEEVLPEVI 370
+ L +G K ++I I ++ Q ++R++++ + P+V
Sbjct: 122 AIRDGKLKGLFGIGEKKIENIVKGIELYKTSQQRISIGMAYPIVKRIIERLKQN--PKVK 179
Query: 371 -ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHS--- 426
I GS RR K + GD+D++ D ++ +K M + + L T
Sbjct: 180 EIQAAGSLRRMKETVGDIDILATGNDG-------AEIIKSFVTMPEVTQILASGTTKGSV 232
Query: 427 --EEVYPRDI-------YAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGG 477
EE D+ Y L +TG+ N LR LA+ KGY++ + G+F GG
Sbjct: 233 RLEEGVQADLRVVNEEEYGAALQYFTGSKDHNVHLRELAKKKGYKISEYGIFEGEKKLGG 292
Query: 478 KQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ E +++ LG W+ P R
Sbjct: 293 RH------------ESDIYKILGMDWIPPELR 312
>gi|392863728|gb|EAS35504.2| high-affinity nickel transporter [Coccidioides immitis RS]
Length = 731
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 97/202 (48%), Gaps = 16/202 (7%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVR 292
+Y +I I P+ +++ ++V +PG + + E + G L + D
Sbjct: 347 AYSTSIAAIAAYPYPLQTPEEVLTIPGCETRIANWFAEWKQSPDGILEAANQLDTDPVYS 406
Query: 293 TISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRH 349
T+++F +WG+G +A+ Y + R LDD+ DSL+ Q++G+KY+D+ IPR
Sbjct: 407 TLNMFYNIWGVGTKSARDFYYHRNWRDLDDVVEHGWDSLSRVQQIGVKYYDEFMEGIPRA 466
Query: 350 EVEQMERLLQKAGEEVLP---------EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHK 400
EVE + R++ + P E II+ G YRRGK GD+D+++ H D
Sbjct: 467 EVESISRVVLEHARRARPGSDFDEKGIECIIV--GGYRRGKERSGDVDIILSHRDEGVTH 524
Query: 401 GFLSKYVKKLKEMKFLREDLIF 422
+ V L+E ++ L
Sbjct: 525 NLVYDVVSSLEEDGWITHTLAL 546
>gi|237755558|ref|ZP_04584176.1| DNA polymerase beta family [Sulfurihydrogenibium yellowstonense
SS-5]
gi|237692291|gb|EEP61281.1| DNA polymerase beta family [Sulfurihydrogenibium yellowstonense
SS-5]
Length = 582
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 91/331 (27%), Positives = 151/331 (45%), Gaps = 44/331 (13%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE---SADQVKGLPGIGK 264
++NK + +IF + +IY L + R+ +Y +A +IE LP I + ++ + GIG
Sbjct: 4 NINKELAKIFNNMSHIYEFLDDKFRALAYARAAQIIEDLPDDIRNYVATGKINDIRGIGS 63
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 323
D I E + TGK+ K E +K + L EV G GP T +++YE+ G DL
Sbjct: 64 HTVDKILEYIKTGKIQKYEELKKLIPEDFLDLM-EVPGFGPKTLKRIYEELGINNKKDLI 122
Query: 324 NE-------------DSLTHSQRLGLKYFDDIKTRIPRHEVEQM-ERLLQKAGEEVLPEV 369
+ + GL+ ++ K R+ E Q+ E LL K + L E+
Sbjct: 123 EALKDGRVAKLKGFGEKKVQNMLKGLELYEASKNRLILWEALQIGETLLAKLKQ--LKEI 180
Query: 370 I-ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFL------REDLIF 422
I GS RR K + GD+D+++ D+ K + Y L+++K + R +I
Sbjct: 181 KNIELAGSLRRRKETIGDIDILVSCDDKDRDK--IINYFVNLEDVKEVLAKGDTRASVII 238
Query: 423 STHSEEVYPRDI----YAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGK 478
EV R + + GL +TG+ N R +A+ KG ++ + G+F A
Sbjct: 239 KEKDREVDLRVLKPEEWGSGLQYFTGSKEHNVHFREIAKQKGLKVSEYGVFDA------- 291
Query: 479 QGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ L TE+EV++ +G W+ P R
Sbjct: 292 ---KTEKRLAGATEEEVYEIVGMQWIPPEMR 319
>gi|302509388|ref|XP_003016654.1| terminal deoxynucleotidyl transferase, putative [Arthroderma
benhamiae CBS 112371]
gi|291180224|gb|EFE36009.1| terminal deoxynucleotidyl transferase, putative [Arthroderma
benhamiae CBS 112371]
Length = 683
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 92/380 (24%), Positives = 167/380 (43%), Gaps = 53/380 (13%)
Query: 85 VIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQG--NGNTSSDGESSHRKK 142
VIR W+ +SL+ E + + + + EG I S ++ + TS D ++
Sbjct: 111 VIRLSWIHESLKAKEPLPFEQFTVY---EGRKIPKPPTSSLEKVLSSTTSPDRCAAQETA 167
Query: 143 IKSSTEDVEHFQAESKGDVETNALSEAPNSPMSS-ESLTNTLSTASASPDF---SSHHIT 198
+ S ++GD ++++ P+SP ++++ + S P S+
Sbjct: 168 LNQSPG--SSILERARGDTPSSSMRFIPSSPSRRMKAMSGSPSVIKQRPKLYRASTSDFE 225
Query: 199 DPSLLYNPPDLNKNIT---------------EIFGKLINI--YRALGEDRRSF-SYYKAI 240
+ + + +PP+ +N E +L+ I R L D +Y +I
Sbjct: 226 EEASIPDPPEWVRNKVVYSCCRSTPLHSPNEEFIDQLLKIKKIRELTLDEVGVRAYSTSI 285
Query: 241 PVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSK---LEH---FEKDEKVRTI 294
+ P+K++S ++V LPG ++ I + T K SK LE D +R I
Sbjct: 286 ASLSAYPYKLKSPEEVLSLPGC----ENRIANLFTEWKHSKDGILESTLPLTTDPALRVI 341
Query: 295 SLFGEVWGIGPATAQKLY-EKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRHEV 351
+ F +WG+G A+ Y +K R LDD+ + D+L+ Q++G+KY+++ T IP+ E
Sbjct: 342 NSFHNIWGVGAKFARDFYYQKQWRDLDDIVEQGWDTLSRVQQIGVKYYEEFLTGIPKEET 401
Query: 352 EQMERLLQKAGEEVLP---------EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGF 402
+ + + V P E II+ G YRRGK GD+DV++ H D +
Sbjct: 402 VSIANTILHHAKLVRPDSDFDGEGVECIIV--GGYRRGKEESGDVDVILTHRDERVTSNL 459
Query: 403 LSKYVKKLKEMKFLREDLIF 422
+ V L++ ++ L
Sbjct: 460 VFDVVASLEQEGWITHTLAL 479
>gi|212213026|ref|YP_002303962.1| DNA Polymerase X family [Coxiella burnetii CbuG_Q212]
gi|212011436|gb|ACJ18817.1| DNA Polymerase X family [Coxiella burnetii CbuG_Q212]
Length = 594
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 93/338 (27%), Positives = 154/338 (45%), Gaps = 53/338 (15%)
Query: 204 YNPPDLNKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKI----ESADQVKG 258
Y P N I + KL ++ GE+ R +Y A +I+KLP + + + +
Sbjct: 20 YFMPVHNPEIAAMLYKLADLLEIRGENPFRIRAYRSAARLIDKLPKSVAEMLKEGEDLTE 79
Query: 259 LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-R 317
LPGIG ++ + I+ IVTTGKL +L+ EK L + G+GP + L+EK H +
Sbjct: 80 LPGIGAALAEKIKTIVTTGKLPQLDRLEKKMPTALTELL-MIEGLGPKRIKILHEKLHIK 138
Query: 318 TLDDLKNE-DSLT---------HSQRL---GLKYFDDIKTRIPRHEVEQME----RLLQK 360
LDDLK E D T +++L GLK F K R+ + E++ L+K
Sbjct: 139 NLDDLKKELDRGTIRDLHGFGEKTEKLIFIGLKSFTKGKRRMKLADAEKIAVPLLDYLKK 198
Query: 361 AGEEVLPEV-IILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMK----- 414
A P++ + GS+RR K + GDLD++ + + + +K+ + L+ +
Sbjct: 199 A-----PDIKKVDIAGSFRRRKETVGDLDILAVATKGRKVVDYFTKFEEVLRVISHGTTR 253
Query: 415 ---FLREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPA 471
FLR + V P Y + +TG+ N +R +A + ++++ G++
Sbjct: 254 STVFLRSGIQVDL---RVVPEKSYGAAMHYFTGSKSHNITIRKMALKRNLKVNEYGVYKG 310
Query: 472 TYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
GK TEKE + F P++EP R
Sbjct: 311 NRQVAGK------------TEKEFYAFFNMPYIEPELR 336
>gi|34014748|gb|AAQ56190.1| DNA polymerase beta-PAK [Trypanosoma brucei]
Length = 813
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 113/225 (50%), Gaps = 41/225 (18%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEK------------LPFKIESAD 254
PD + + +IF +L I +AL E ++ SY A+ +++ +P + +
Sbjct: 309 PDYRERVLQIFQQLAEINKALDERYKASSYVVAVERLKRNDYIYMNFPPNIMPPGVNDEE 368
Query: 255 ------QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATA 308
+VK +G +++ I EI+TTG L++L ++ +R + +V G+GP TA
Sbjct: 369 RKRLVAKVKNTTAMGDKLREKIVEILTTGDLAELHLLQQTPLIRAVRELTQVHGVGPRTA 428
Query: 309 QKLYEK-GHRTLDDLK--------NED-----------SLTHSQRLGLKYFDDIKTRIPR 348
++K G +T+++L+ NE LT +QRLGLKY+ DI RIP
Sbjct: 429 VIFFKKHGLKTVEELRKRVEEQEANEGGKGGSGDKSALKLTEAQRLGLKYYSDITQRIPH 488
Query: 349 HEVEQMERLLQKAGEEVLPEV--IILCGGSYRRGKASCGDLDVVI 391
EV E L+ + L + + +C GSYRR A+ GD+DV+I
Sbjct: 489 AEVRLHEAFLKLRLRKYLGKSYELAIC-GSYRRRLATSGDIDVLI 532
>gi|261328280|emb|CBH11257.1| mitochondrial DNA polymerase beta-PAK, putative [Trypanosoma brucei
gambiense DAL972]
Length = 813
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 113/225 (50%), Gaps = 41/225 (18%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEK------------LPFKIESAD 254
PD + + +IF +L I +AL E ++ SY A+ +++ +P + +
Sbjct: 309 PDYRERVLQIFQQLAEINKALDERYKASSYVVAVERLKRNDYIYMNFPPNIMPPGVNDEE 368
Query: 255 ------QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATA 308
+VK +G +++ I EI+TTG L++L ++ +R + +V G+GP TA
Sbjct: 369 RKRLVAKVKNTTAMGDKLREKIVEILTTGDLAELHLLQQTPLIRAVRELTQVHGVGPRTA 428
Query: 309 QKLYEK-GHRTLDDLK--------NED-----------SLTHSQRLGLKYFDDIKTRIPR 348
++K G +T+++L+ NE LT +QRLGLKY+ DI RIP
Sbjct: 429 VIFFKKHGLKTVEELRKRVEEQEANEGGKGGSGDKSALKLTEAQRLGLKYYSDITQRIPH 488
Query: 349 HEVEQMERLLQKAGEEVLPEV--IILCGGSYRRGKASCGDLDVVI 391
EV E L+ + L + + +C GSYRR A+ GD+DV+I
Sbjct: 489 AEVRLHEAFLKLRLRKYLGKSYELAIC-GSYRRRLATSGDIDVLI 532
>gi|72389312|ref|XP_844951.1| mitochondrial DNA polymerase beta-PAK [Trypanosoma brucei TREU927]
gi|62358909|gb|AAX79360.1| mitochondrial DNA polymerase beta-PAK [Trypanosoma brucei]
gi|70801485|gb|AAZ11392.1| mitochondrial DNA polymerase beta-PAK [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 813
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 113/225 (50%), Gaps = 41/225 (18%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEK------------LPFKIESAD 254
PD + + +IF +L I +AL E ++ SY A+ +++ +P + +
Sbjct: 309 PDYRERVLQIFQQLAEINKALDERYKASSYVVAVERLKRNDYIYMNFPPNIMPPGVNDEE 368
Query: 255 ------QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATA 308
+VK +G +++ I EI+TTG L++L ++ +R + +V G+GP TA
Sbjct: 369 RKRLVAKVKNTTAMGDKLREKIVEILTTGDLAELHLLQQTPLIRAVRELTQVHGVGPRTA 428
Query: 309 QKLYEK-GHRTLDDLK--------NEDS-----------LTHSQRLGLKYFDDIKTRIPR 348
++K G +T+++L+ NE LT +QRLGLKY+ DI RIP
Sbjct: 429 VIFFKKHGLKTVEELRKRVEEQEANEGGKGSSGDKSALKLTEAQRLGLKYYSDITQRIPH 488
Query: 349 HEVEQMERLLQKAGEEVLPEV--IILCGGSYRRGKASCGDLDVVI 391
EV E L+ + L + + +C GSYRR A+ GD+DV+I
Sbjct: 489 AEVRLHEAFLKLRLRKYLGKSYELAIC-GSYRRRLATSGDIDVLI 532
>gi|304314701|ref|YP_003849848.1| DNA polymerase IV [Methanothermobacter marburgensis str. Marburg]
gi|302588160|gb|ADL58535.1| predicted DNA polymerase IV [Methanothermobacter marburgensis str.
Marburg]
Length = 557
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 95/334 (28%), Positives = 158/334 (47%), Gaps = 43/334 (12%)
Query: 203 LYNPPDLNKN--ITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE---SADQVK 257
++N L KN + I ++ + G++ R+ +Y +A +E L IE + +++
Sbjct: 1 MHNIYALMKNHLVAHILNRVADYMELRGDEFRTKAYRRAARTVEFLGEDIEDVAAQGRLR 60
Query: 258 GLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GH 316
LPGIG+++ I+EI++TG LS LE + V SL V G+GP T + LYE+ G
Sbjct: 61 ELPGIGENIAAKIEEILSTGSLSLLERLAGEYPVDLDSLLS-VEGVGPKTVKLLYEELGI 119
Query: 317 RTLDDLKNEDSLTHS----------QRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVL 366
+TLDDL+ + + + L+ + ++RI R + + L + E+L
Sbjct: 120 KTLDDLEEQARRHRIRRLRGMGEKKEAMILRNIELARSRISRRPLAYVVPLASRIKSELL 179
Query: 367 P-EVI--ILCGGSYRRGKASCGDLDVVIMHPD-RKSHKGFLSK------YVKKLKEMKF- 415
E + + GS RRG+ + GD+D+++ D + F S VK K+
Sbjct: 180 ELEGVRRVEVAGSIRRGRETVGDIDILVTATDPHRVMDHFTSMDLVEEVVVKGPKKSTVR 239
Query: 416 LREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS 475
LRE L V+ +++ L+ +TG+ N LR +A S +L + GLF
Sbjct: 240 LREGLDCDLR---VFDDEVFGAALLYFTGSWEFNVELRRIAISSSMKLSEYGLFR----- 291
Query: 476 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
G + V R TE EV + LG ++EP R
Sbjct: 292 -GDERVAGR------TEAEVLEALGLTYIEPELR 318
>gi|432113117|gb|ELK35695.1| DNA nucleotidylexotransferase [Myotis davidii]
Length = 466
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 81/330 (24%), Positives = 144/330 (43%), Gaps = 63/330 (19%)
Query: 234 FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRT 293
++ +A V++ LPF I S +G+P +G ++ I+EI+ G+ S+++ DE+ ++
Sbjct: 146 LAFMRAASVLKSLPFTIVSMKDTEGIPCLGDRVKSIIEEIIEDGESSEVKAVLNDERYQS 205
Query: 294 ISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL--THSQRLGLKYFDDIKTRIPRHEV 351
LF V+G+G T++K + G RTL ++++ +L T Q+ G Y++D+ + + + E
Sbjct: 206 FKLFTSVFGVGLKTSEKWFRMGFRTLSKIRSDKTLKFTRMQKAGFLYYEDLVSCVTQAEA 265
Query: 352 EQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVV------IMHPDRKSHKGFLSK 405
E + L+++A LP+ + G +R L + + D S G LS
Sbjct: 266 EAVGVLVKEAVWAFLPDAFVTVTGGFRSSAVKRPWLGLSNRQIPPLQREDNTSRPGLLSG 325
Query: 406 YVK----------------KLKEMK------FLREDLIFSTHSEEV-------------- 429
+ KL K F + LI H + V
Sbjct: 326 RGRGLLLYYDLVESTFEKFKLPSRKVDALDHFQKCFLILKLHHQRVDGGKSSQQEGKTWK 385
Query: 430 --------YPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQG 480
P + AF L+ WTG+ R LR A + LD+ L+ T
Sbjct: 386 AIRVDLVMCPYERRAFALLGWTGSRQFERDLRRYATHERKMMLDNHALYDKT-------- 437
Query: 481 VRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
R L+ ++E+++F LG +++P ERN
Sbjct: 438 --KRIFLEAESEEDIFAHLGLEYIDPWERN 465
>gi|403217348|emb|CCK71842.1| hypothetical protein KNAG_0I00510 [Kazachstania naganishii CBS
8797]
Length = 588
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 122/275 (44%), Gaps = 16/275 (5%)
Query: 124 QIQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNA-LSEAPNSPMSSESLTNT 182
+ Q N +SS + +D + +ES+ D+E +S + NSPM + S+
Sbjct: 119 ETQENFPSSSANSEQPSPACTAEMKDTKTSHSESETDIEGFVEMSPSSNSPMPAPSVIPD 178
Query: 183 LSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPV 242
A+ + L P +N + + +L Y G+ RS Y A
Sbjct: 179 PPVIKANEKYVR--------LTEIPRMNSQLIDAMQRLYKKYDIKGDHFRSRGYKLAKAS 230
Query: 243 IEKLPFKIESADQVK-GLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVW 301
IEK PF+I+S +Q + L IG S+ IQ I+ +G L L+ + E + + F
Sbjct: 231 IEKCPFQIKSGEQAQLELANIGPSIAKKIQTILASGTLPGLD--DSSELDQRLEYFTNCH 288
Query: 302 GIGPATAQKLYEKGHRTLDDL----KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERL 357
GIG TA++ + + D+ E LG YF+D +I R E E+ +
Sbjct: 289 GIGTHTAKRWLALQYTSFTDVLRGSPQEFVSGWPSLLGWSYFEDWSRKISRTECEKHLSV 348
Query: 358 LQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIM 392
+++ E+ P+ + GSY RG +CGD+D++
Sbjct: 349 VKQCLSEIDPDCQVELQGSYNRGSQTCGDIDLLFF 383
Score = 39.7 bits (91), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 12/70 (17%)
Query: 440 IAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFL 499
I WTG+ NR +RL A GY+L GLF GG++ L+ E +FD L
Sbjct: 515 IQWTGSGEFNRWIRLRAAKMGYKLTQHGLF-----KGGQK-------LESFDEGVIFDTL 562
Query: 500 GFPWLEPHER 509
P + P ER
Sbjct: 563 DVPRIPPEER 572
>gi|242776717|ref|XP_002478888.1| terminal deoxynucleotidyl transferase, putative [Talaromyces
stipitatus ATCC 10500]
gi|218722507|gb|EED21925.1| terminal deoxynucleotidyl transferase, putative [Talaromyces
stipitatus ATCC 10500]
Length = 707
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 101/202 (50%), Gaps = 16/202 (7%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVR 292
+Y +I + P+++ + +V LPG + + E + G+L + + D +
Sbjct: 358 AYSTSIAALAAYPYELRTPVEVLSLPGCDTKIANLFVEFRNSSDGRLEAADVLDTDPVIS 417
Query: 293 TISLFGEVWGIGPATAQKLY-EKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRH 349
TI F +WG+G TA++ Y ++ R LDD+ ++L+ Q++GLKY+D+ IPR
Sbjct: 418 TIHQFYNIWGVGARTAREFYYQRQWRDLDDVIVHGWNNLSRVQQIGLKYYDEFLAGIPRT 477
Query: 350 EVEQMERLLQKAGEEVLP---------EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHK 400
EV ++ + + + P E II+ G YRRGK + GD+D+V+ H D + K
Sbjct: 478 EVAEIAKTIHRHAILARPGCEYDGQGIECIIV--GGYRRGKETQGDIDLVLSHRDERVTK 535
Query: 401 GFLSKYVKKLKEMKFLREDLIF 422
+ V L+ +++ L
Sbjct: 536 DLVLDVVGSLENGGWIKHTLAL 557
>gi|401888944|gb|EJT52888.1| beta DNA polymerase [Trichosporon asahii var. asahii CBS 2479]
gi|406697654|gb|EKD00910.1| beta DNA polymerase [Trichosporon asahii var. asahii CBS 8904]
Length = 605
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 79/351 (22%), Positives = 144/351 (41%), Gaps = 95/351 (27%)
Query: 234 FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRT 293
SY +++ +++ +P +I S ++ + L +G + + I E + TG++S+ E+ +
Sbjct: 273 LSYRRSMAILKSVPRRIRSGEEAQTLVDVGGKVANRIDEYLATGQISESASILASERYKA 332
Query: 294 ISLFGEVWGIGPATAQKLYEKGHRTLDDL---------------------KNEDSLTHSQ 332
+ LF V+ IG TA +L++ G RTLDD+ + E ++T +
Sbjct: 333 LRLFSSVFTIGTHTAVQLWDAGCRTLDDVLQHYDWTPPSTPKEERKARKRRMEGTMTKPE 392
Query: 333 --RLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVV 390
+K D + P+ +V + L+++ + + P+ + G +RRGK GD+DV+
Sbjct: 393 IVHAWVKLRDQLDQ--PK-DVAAISSLVREHLQALRPDTQQVIAGGFRRGKQDTGDVDVI 449
Query: 391 IMH------------PDRKSHKGFLSKYVKKLKEMKFL---------------------- 416
PD G L + V++L + +
Sbjct: 450 FTAGPYPSHATSPQTPDSDPTDGLLFRLVRRLCRLGIITHVLQLTQRARVGPLHSSGANF 509
Query: 417 -----------------REDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK 459
R DLI S PR YA +++W+G+ + R LR E +
Sbjct: 510 DNLDKAFVILKIGGQHRRVDLIAS-------PRTRYAAAVLSWSGSMMFERDLRRYVEDR 562
Query: 460 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
G + + P T + + F TE+E+F FL P++ P RN
Sbjct: 563 GLKFRAGLMDPHT-----------QKEINFATERELFAFLELPYVPPQLRN 602
>gi|260893633|ref|YP_003239730.1| DNA-directed DNA polymerase [Ammonifex degensii KC4]
gi|260865774|gb|ACX52880.1| DNA-directed DNA polymerase [Ammonifex degensii KC4]
Length = 576
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 139/332 (41%), Gaps = 54/332 (16%)
Query: 210 NKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLP---FKIESADQVKGLPGIGKS 265
N + IF ++ I LGED R +Y +A+ IE LP I + ++ +PGIGK
Sbjct: 3 NAEVCAIFREMAAIMEILGEDPYRIRAYQRAVQNIENLPEDIAVIAARGELTKIPGIGKE 62
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE----KGHRTLDD 321
+ I+EI+ TG L K E ++ + L +V GIGP TA+ LYE K L+
Sbjct: 63 LARKIEEILATGTLQKYEELKRKVPPGLVELL-QVPGIGPKTAKLLYERLGVKSLAELEQ 121
Query: 322 LKNEDSLT----------HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII 371
L E L + R G+ ++ R P V + R + E P +
Sbjct: 122 LAKEGKLKGLPGIGAKTEENIRRGIALLRSVEERRPLGLVLPLARAVVNLLREKAPVKRV 181
Query: 372 LCGGSYRRGKASCGDLDVVIM--HPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE-- 427
GS RR K + GD+D++ P+ + +K + + E L
Sbjct: 182 DLAGSIRRFKETVGDVDILAASTRPE---------EVIKIFTTLPLVAEVLAQGPTKASV 232
Query: 428 ----------EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGG 477
V P + Y L +TG+ N R+R LA +G ++++ G+F
Sbjct: 233 RTGDGLQIDLRVVPPESYGAALCYFTGSKAHNIRVRELAVKQGLKVNEYGVF-------- 284
Query: 478 KQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
R + TE+EV+ +G P++ P R
Sbjct: 285 ----RGEERIAGATEEEVYAAVGLPYIPPEIR 312
>gi|301615444|ref|XP_002937182.1| PREDICTED: hypothetical protein LOC100495475, partial [Xenopus
(Silurana) tropicalis]
Length = 913
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 79/356 (22%), Positives = 138/356 (38%), Gaps = 88/356 (24%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
D N+ ++ F L + R ++ +A +I+ LPF I + +V+ LP +G M+
Sbjct: 592 DTNRCFSDAFDILAEYFEFSENKGRKVAFLRASSLIKSLPFPITAMKEVERLPWLGDQMK 651
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ GK K+ +E+ ++ + ++ G
Sbjct: 652 AIIEEILEEGKSYKVLELMSEERYKSFK------------RKIVFITGR----------- 688
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 387
Q LG Y++DI + + E E ++L++ + +P+ ++ G +RRGK + D+
Sbjct: 689 --MCQMLGFLYYEDITSSVSWAEAETTDQLIKSIVWKFVPDAVVTLTGGFRRGKKNGHDV 746
Query: 388 DVVIMHPDRKSHKGFLSKYVKKLKEMKFLR-EDLIFSTHSEE------------------ 428
D++I P + K L + LK L D+I ST E
Sbjct: 747 DIIITCPRKGKEKNILHNTISVLKNQGLLLFSDIIESTFVETKLPSKHVDALDHFQKAFL 806
Query: 429 ---------------------------------VYPRDIYAFGLIAWTGNDVLNRRL-RL 454
+ P + Y + L+ WTG+ R L R
Sbjct: 807 ILKLLTQQTAIGDIIDPCGCEGRKWKAVRLDLVITPYEQYPYALLGWTGSRQFERDLRRY 866
Query: 455 LAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+ LD+ GL+ + + LK E+E+F+ LG +LEP ERN
Sbjct: 867 TTHERKMMLDNHGLYDKS----------KKVFLKASNEEEIFEHLGLDYLEPWERN 912
>gi|346322989|gb|EGX92587.1| cohesin complex subunit (Psm1), putative [Cordyceps militaris CM01]
Length = 2364
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 122/241 (50%), Gaps = 11/241 (4%)
Query: 192 FSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKI 250
++++ P+ + NPP+ + I E+ K I R L D+ +Y +I + P+KI
Sbjct: 2041 YTTYSCQRPTPM-NPPN-DAFIEEL--KNIRTLRLLQGDKIGIRAYSTSIASLAAYPYKI 2096
Query: 251 ESADQVKGLPGIGKS-MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQ 309
++ +G S + + QE TG+ + ++D +++ + F +WG+G A A+
Sbjct: 2097 QTP---QGTSICWFSFIAELYQEWHATGQTEETRKSKEDTEIQVLRTFYNIWGVGDANAR 2153
Query: 310 KLYEKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
+ Y+KG R LDD+ SL+ Q++G+KY+DD + +I R EV ++ ++ +
Sbjct: 2154 EFYQKGWRDLDDIVEYGWQSLSRVQQIGVKYYDDFQEKINREEVARIANIILNHARRLDH 2213
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 427
+ G YRRG+ GD+DV++ H + + + V L+ K++ L ST +
Sbjct: 2214 GYEMAVVGGYRRGRDENGDIDVLLTHREELKTFKLVERLVLSLESEKYISHTLSLSTRNS 2273
Query: 428 E 428
E
Sbjct: 2274 E 2274
>gi|145517943|ref|XP_001444849.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124412282|emb|CAK77452.1| unnamed protein product [Paramecium tetraurelia]
Length = 434
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 75/142 (52%), Gaps = 11/142 (7%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N I E KL+ IY R +Y KAI +++ LP+ I+S+D +K +P IG ++
Sbjct: 290 NNEIIEELEKLLKIYTNEKNKGRCIAYRKAIGLLKALPYPIKSSDDLKDMPTIGDKIK-- 347
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSL 328
K + E EK I VWGIGP TA Y KG RTL+DL KN+ L
Sbjct: 348 --------KEDNRNYLEGQEKNVAIGQLSRVWGIGPTTAATFYFKGIRTLEDLRKNKHLL 399
Query: 329 THSQRLGLKYFDDIKTRIPRHE 350
+Q++GL +D++ RIPR E
Sbjct: 400 NRNQQVGLHLVEDLEQRIPREE 421
>gi|425766657|gb|EKV05260.1| Terminal deoxynucleotidyl transferase, putative [Penicillium
digitatum Pd1]
gi|425775308|gb|EKV13586.1| Terminal deoxynucleotidyl transferase, putative [Penicillium
digitatum PHI26]
Length = 663
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 96/203 (47%), Gaps = 17/203 (8%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSM-------QDH--IQEIVTTGKLSKLEHF 285
+Y +I + P I+ ++ LPG + Q H G ++ +
Sbjct: 315 AYSTSIASLAAYPHPIQRPSEILALPGCNAKIAELFSQFQQHGGCNHTDDDGNVATADAL 374
Query: 286 EKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIK 343
E D + ++ F ++WG+G TA++ Y++G R LDD+ +L+ Q++G+K++++ +
Sbjct: 375 ETDPALCVLNSFYQIWGVGAKTAREFYQRGWRDLDDIVEHGWSTLSRVQQIGVKFYEEFQ 434
Query: 344 TRIPRHEVEQMERLLQKAGEEVLPEVIILCG------GSYRRGKASCGDLDVVIMHPDRK 397
+PR E E + +++ V PE CG G YRRGK GD+DVV+ H D
Sbjct: 435 QGVPRAESEGIATVIRDHAGRVRPEAGGGCGIECVIVGGYRRGKGLSGDVDVVLSHRDDA 494
Query: 398 SHKGFLSKYVKKLKEMKFLREDL 420
+ + V L+ + + L
Sbjct: 495 VTRNLVVDVVASLEAERCITHTL 517
>gi|327303324|ref|XP_003236354.1| high affinity nickel transporter [Trichophyton rubrum CBS 118892]
gi|326461696|gb|EGD87149.1| high affinity nickel transporter [Trichophyton rubrum CBS 118892]
Length = 683
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 92/379 (24%), Positives = 163/379 (43%), Gaps = 51/379 (13%)
Query: 85 VIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSHRKKIK 144
VIR W+ +SL+ + + + + + EG I+ + ++ ++++ ++
Sbjct: 111 VIRLSWIHESLKAKKPLPFEQFTVY---EGHKISKPPTASLEKASSSTTFPGRCAAQETA 167
Query: 145 SSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTN----------TLSTASASPDFSS 194
+ ++GD + ++ P+SP T+ L AS S
Sbjct: 168 LNQSPGSSILGRARGDTASPSMKFIPSSPSHRMKATSDSPSVLKQRPKLYRASTSDLEEE 227
Query: 195 HHITDP----------SLLYNPPDLNKNITEIFGKLINI--YRALGEDRRSF-SYYKAIP 241
I DP S + P L+ N E +L+ I R L D +Y +I
Sbjct: 228 ASIPDPPEWVRNKVVYSCCRSTPLLSPN-AEFIDQLLKIKKIRELTLDEVGVRAYSTSIA 286
Query: 242 VIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSK---LEH---FEKDEKVRTIS 295
+ P+K++S ++V LPG ++ I + T K SK LE D +R I
Sbjct: 287 SLSAYPYKLKSPEEVLSLPGC----ENRIANLFTEWKHSKDGILESTLPLTTDPALRVIQ 342
Query: 296 LFGEVWGIGPATAQKLY-EKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRHEVE 352
F +WG+G +A+ Y +K R LDD+ + D+L+ Q++G+KY+++ T IP+ E
Sbjct: 343 SFHNIWGVGAKSARDFYYQKQWRDLDDIVEQGWDALSRVQQIGVKYYEEFLTGIPKEETV 402
Query: 353 QMERLLQKAGEEVLP---------EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFL 403
+ + + V P E II+ G YRRGK GD+DV++ H D + +
Sbjct: 403 SIANTILHHAKLVRPDSDFDGEGVECIIV--GGYRRGKEESGDVDVILTHRDERVTSNLV 460
Query: 404 SKYVKKLKEMKFLREDLIF 422
V L++ ++ L
Sbjct: 461 FDVVASLEQEGWITHTLAL 479
>gi|342181099|emb|CCC90577.1| putative mitochondrial DNA polymerase beta-PAK [Trypanosoma
congolense IL3000]
Length = 929
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 109/231 (47%), Gaps = 53/231 (22%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEK------------LPFKIESAD 254
PD + + +IF L +I +AL E ++ SY A+ +++ +P ++ A
Sbjct: 444 PDHREKLLQIFQSLADINKALDEPYKASSYVIAVEKLKRNDYVYTNIPPNIMPPGVDDAK 503
Query: 255 Q------VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATA 308
+ V P +G ++ + EI+TTG L++L + +R + +V G+GP TA
Sbjct: 504 RKQLIAAVNATPSVGAKLKGKMVEILTTGDLAELHSLQAKPVIRAVRELTQVHGVGPRTA 563
Query: 309 QKLYEK-GHRTLDDLKNED-------------------SLTHSQRLGLKYFDDIKTRIPR 348
++K G +T+++LK LT +QRLGLKY DIK RIP
Sbjct: 564 VTFFKKHGVKTVEELKQRVEEQEAAEGGKGNSREKPALQLTEAQRLGLKYHSDIKQRIPH 623
Query: 349 HEVE--------QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVI 391
EV ++ + L K E + +C GSYRR + GD+DV++
Sbjct: 624 EEVRLHEAYLKLRLRKYLGKGYE------LSIC-GSYRRRLPTSGDIDVLV 667
>gi|161830379|ref|YP_001596420.1| DNA-binding/PHP domain-containing protein [Coxiella burnetii RSA
331]
gi|164686005|ref|ZP_01947535.2| PHP domain protein [Coxiella burnetii 'MSU Goat Q177']
gi|161762246|gb|ABX77888.1| putative DNA-binding/PHP domain protein [Coxiella burnetii RSA 331]
gi|164601535|gb|EAX31846.2| PHP domain protein [Coxiella burnetii 'MSU Goat Q177']
Length = 578
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 92/338 (27%), Positives = 154/338 (45%), Gaps = 53/338 (15%)
Query: 204 YNPPDLNKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKI----ESADQVKG 258
Y P N I + KL ++ GE+ R +Y A +I++LP + + + +
Sbjct: 4 YFMPVHNPEIAAMLYKLADLLEIRGENPFRIRAYRSAARLIDELPKSVAEMLKEGEDLTE 63
Query: 259 LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-R 317
LPGIG ++ + I+ IVTTGKL +L+ EK L + G+GP + L+EK H +
Sbjct: 64 LPGIGAALAEKIKTIVTTGKLPQLDRLEKKMPTALTELL-MIEGLGPKRIKILHEKLHIK 122
Query: 318 TLDDLKNE-DSLT---------HSQRL---GLKYFDDIKTRIPRHEVEQME----RLLQK 360
LDDLK E D T +++L GLK F K R+ + E++ L+K
Sbjct: 123 NLDDLKKELDRGTIRDLHGFGEKTEKLIFIGLKSFTKGKRRMKLADAEKIAVPLLDYLKK 182
Query: 361 AGEEVLPEV-IILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMK----- 414
A P++ + GS+RR K + GDLD++ + + + +K+ + L+ +
Sbjct: 183 A-----PDIKKVDIAGSFRRRKETVGDLDILAVATKGRKVVDYFTKFEEVLRVISHGTTR 237
Query: 415 ---FLREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPA 471
FLR + V P Y + +TG+ N +R +A + ++++ G++
Sbjct: 238 STVFLRSGIQVDLR---VVPEKSYGAAMHYFTGSKSHNITIRKMALKRNLKVNEYGVYKG 294
Query: 472 TYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
GK TEKE + F P++EP R
Sbjct: 295 NRQVAGK------------TEKEFYAFFNMPYIEPELR 320
>gi|209364119|ref|YP_001424924.2| DNA Polymerase X family [Coxiella burnetii Dugway 5J108-111]
gi|212218905|ref|YP_002305692.1| DNA Polymerase X family [Coxiella burnetii CbuK_Q154]
gi|215918974|ref|NP_819524.2| DNA polymerase X family/PHP domain-containing protein [Coxiella
burnetii RSA 493]
gi|206583859|gb|AAO90038.2| DNA Polymerase X family [Coxiella burnetii RSA 493]
gi|207082052|gb|ABS78173.2| DNA Polymerase X family [Coxiella burnetii Dugway 5J108-111]
gi|212013167|gb|ACJ20547.1| DNA Polymerase X family [Coxiella burnetii CbuK_Q154]
Length = 594
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 92/338 (27%), Positives = 154/338 (45%), Gaps = 53/338 (15%)
Query: 204 YNPPDLNKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKI----ESADQVKG 258
Y P N I + KL ++ GE+ R +Y A +I++LP + + + +
Sbjct: 20 YFMPVHNPEIAAMLYKLADLLEIRGENPFRIRAYRSAARLIDELPKSVAEMLKEGEDLTE 79
Query: 259 LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-R 317
LPGIG ++ + I+ IVTTGKL +L+ EK L + G+GP + L+EK H +
Sbjct: 80 LPGIGAALAEKIKTIVTTGKLPQLDRLEKKMPTALTELL-MIEGLGPKRIKILHEKLHIK 138
Query: 318 TLDDLKNE-DSLT---------HSQRL---GLKYFDDIKTRIPRHEVEQME----RLLQK 360
LDDLK E D T +++L GLK F K R+ + E++ L+K
Sbjct: 139 NLDDLKKELDRGTIRDLHGFGEKTEKLIFIGLKSFTKGKRRMKLADAEKIAVPLLDYLKK 198
Query: 361 AGEEVLPEV-IILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMK----- 414
A P++ + GS+RR K + GDLD++ + + + +K+ + L+ +
Sbjct: 199 A-----PDIKKVDIAGSFRRRKETVGDLDILAVATKGRKVVDYFTKFEEVLRVISHGTTR 253
Query: 415 ---FLREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPA 471
FLR + V P Y + +TG+ N +R +A + ++++ G++
Sbjct: 254 STVFLRSGIQVDLR---VVPEKSYGAAMHYFTGSKSHNITIRKMALKRNLKVNEYGVYKG 310
Query: 472 TYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
GK TEKE + F P++EP R
Sbjct: 311 NRQVAGK------------TEKEFYAFFNMPYIEPELR 336
>gi|385867297|pdb|3B0Y|A Chain A, K263d Mutant Of Polx From Thermus Thermophilus Hb8
Complexed With Ca- Dgtp
Length = 575
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 102/332 (30%), Positives = 153/332 (46%), Gaps = 50/332 (15%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIE-----SADQVKGLPGIG 263
N+ + IF ++ + LG++ R +Y++A + L IE + + LPG+G
Sbjct: 3 NQELARIFEEIGLMSEFLGDNPFRVRAYHQAARTLYDLDTPIEEIAEKGKEALMELPGVG 62
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKV-RTISLFGEVWGIGPATAQKLYEK-GHRTLDD 321
+ + I E + TGK+ K H E KV R + EV G+GP TA+ LYE G +L+
Sbjct: 63 PDLAEKILEFLRTGKVRK--HEELSRKVPRGVLEVMEVPGVGPKTARLLYEGLGIDSLEK 120
Query: 322 LK---NEDSLTHSQRLGLKYFDDIK----------TRIPRHEVEQMERLLQKAGEEVLPE 368
LK + LT + G K + I+ R P V + R L +A LP
Sbjct: 121 LKAALDRGDLTRLKGFGPKRAERIREGLALAQAAGKRRPLGAVLSLARSLLEA-IRALPG 179
Query: 369 V--IILCGGSYRRGKASCGDLDVVIMHPD-RKSHKGFL------SKYVK-KLKEMKFLRE 418
V LCG S RR K + GDLD ++ + ++ +GF+ Y K K + FL+
Sbjct: 180 VERAELCG-SARRYKDTVGDLDFLVASREGERAVEGFVRLPQVKEVYAKGKERATVFLKN 238
Query: 419 DLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGK 478
L V P + Y GL TG+D + RLR LA+ KG +L + G+F
Sbjct: 239 GLQVDLR---VVPPESYGAGLQYLTGSDAHSIRLRALAQEKGLKLSEYGVF--------- 286
Query: 479 QGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
R + +TE+EV+ LG PW+ P R
Sbjct: 287 ---RGEKRIAGETEEEVYAALGLPWIPPPLRE 315
>gi|343427145|emb|CBQ70673.1| probable DNA polymerase X-putative [Sporisorium reilianum SRZ2]
Length = 714
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 127/278 (45%), Gaps = 43/278 (15%)
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLT 329
I++ + ++ ++ ++++ R +F V+GIG A++ G TL+ L++ SL
Sbjct: 432 IRQRLLEDRVDAIDGLSREDRSRV--MFQRVYGIGATKAERFVHAGFLTLEQLRDA-SLE 488
Query: 330 HSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
+QR+GLK+ DDI+ IPR E E+ ++ V E+ GS+RRG DLD
Sbjct: 489 RAQRIGLKHMDDIECLIPRAESERWREVMLDVFRTVDAELGAELLGSFRRGDHYSSDLDF 548
Query: 390 VIMHP-----------------DRKSHKGFLSKYVKKLKEMKFLREDLI----------- 421
V+ HP R L++ V +L+ L ++L+
Sbjct: 549 VLFHPAVTDMRIPRADNPSKSDARPLAASLLTRIVDELRNRHLLADELLAHGPLAIKGLV 608
Query: 422 -FSTHSE------EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATY- 473
S S+ P AF +A TG+ L LR A+++G+ L++ G+ P
Sbjct: 609 RLSPASKVRRIDLNFAPFTRRAFYTLAKTGDADLMVHLRAKAKARGWALNEYGVGPPNAN 668
Query: 474 GSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 511
GS + + + E+++F+ L P+LEP ER+
Sbjct: 669 GSAWTENLLPDAT----DERQIFELLQVPYLEPEERSF 702
>gi|239606327|gb|EEQ83314.1| terminal deoxynucleotidyl transferase [Ajellomyces dermatitidis
ER-3]
Length = 723
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 95/395 (24%), Positives = 162/395 (41%), Gaps = 64/395 (16%)
Query: 85 VIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSHRKKIK 144
++++ WL+DSL+ G V Y + +A R + G + + +S R ++
Sbjct: 202 ILKFSWLDDSLKAGHAVPLAPYIVY---HARKVAPRDNISVDGTSSNVTSVVASPRSPLR 258
Query: 145 SSTEDVEHFQAESKGDVETNALSEAPN--SPMSSES------------------------ 178
+K D A S APN SP ++ S
Sbjct: 259 PRESPSRAILERAKADA---ASSPAPNHFSPGTARSRRARVQHGPPAQKEPPRLLRETTE 315
Query: 179 LTNTLSTASASPDFSSH---HITDPSLLYNPPDLNKNITEIFGKLINI--YRALGEDRRS 233
T +P + + S NPP+ +LI I R L D
Sbjct: 316 EHEAAETGPPTPAWVRDKLIYACQRSAFLNPPN-----EAFINQLIKIKKIRELTLDEIG 370
Query: 234 F-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEK 290
+Y AI I P+K++S +V LPG + E + G L + D
Sbjct: 371 VRAYSTAIAAIAAYPYKLQSPKEVSTLPGCESKIAILFSEFNQSKDGTLEAANQLDTDPV 430
Query: 291 VRTISLFGEVWGIGPATAQKLYEKGH-RTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIP 347
+ ++ F +WG+G TA+ Y H R++DD+ + + L+ Q++G+KYFD+ IP
Sbjct: 431 LSVLNQFYNIWGVGAKTARDFYYHYHWRSIDDVIEQGWNMLSRVQQIGIKYFDEFMAGIP 490
Query: 348 RHEVEQMERLLQKAGEEVLP-----------EVIILCGGSYRRGKASCGDLDVVIMHPDR 396
R EVE + ++ + ++V P E II+ G YRRGK GD+D+++ H D
Sbjct: 491 RSEVESIADIVLQHAKQVRPHSQKDYDGKGIECIIV--GGYRRGKEVSGDVDLILSHRDE 548
Query: 397 KSHKGFLSKYVKKLKEMKFLREDL---IFSTHSEE 428
+ + V L++ ++ L + ++H E+
Sbjct: 549 RVTHNLVYDVVASLEKEGWITHTLALHLTTSHREQ 583
>gi|327353100|gb|EGE81957.1| terminal deoxynucleotidyl transferase [Ajellomyces dermatitidis
ATCC 18188]
Length = 723
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 95/395 (24%), Positives = 162/395 (41%), Gaps = 64/395 (16%)
Query: 85 VIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSHRKKIK 144
++++ WL+DSL+ G V Y + +A R + G + + +S R ++
Sbjct: 202 ILKFSWLDDSLKAGHAVPLAPYIVY---HARKVAPRDNISVDGTSSNVTSVVASPRSPLR 258
Query: 145 SSTEDVEHFQAESKGDVETNALSEAPN--SPMSSES------------------------ 178
+K D A S APN SP ++ S
Sbjct: 259 PRESPSRAILERAKADA---ASSPAPNHFSPGTARSRRARVQHGPPAQKEPPRLLRETTE 315
Query: 179 LTNTLSTASASPDFSSH---HITDPSLLYNPPDLNKNITEIFGKLINI--YRALGEDRRS 233
T +P + + S NPP+ +LI I R L D
Sbjct: 316 EHEAAETGPPTPAWVRDKLIYACQRSAFLNPPN-----EAFINQLIKIKKIRELTLDEIG 370
Query: 234 F-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEK 290
+Y AI I P+K++S +V LPG + E + G L + D
Sbjct: 371 VRAYSTAIAAIAAYPYKLQSPKEVSTLPGCESKIAILFSEFNQSKDGTLESANQLDTDPV 430
Query: 291 VRTISLFGEVWGIGPATAQKLYEKGH-RTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIP 347
+ ++ F +WG+G TA+ Y H R++DD+ + + L+ Q++G+KYFD+ IP
Sbjct: 431 LSVLNQFYNIWGVGAKTARDFYYHYHWRSIDDVIEQGWNMLSRVQQIGIKYFDEFMAGIP 490
Query: 348 RHEVEQMERLLQKAGEEVLP-----------EVIILCGGSYRRGKASCGDLDVVIMHPDR 396
R EVE + ++ + ++V P E II+ G YRRGK GD+D+++ H D
Sbjct: 491 RSEVESIADIVLQHAKQVRPHSQKDYDGKGIECIIV--GGYRRGKEVSGDVDLILSHRDE 548
Query: 397 KSHKGFLSKYVKKLKEMKFLREDL---IFSTHSEE 428
+ + V L++ ++ L + ++H E+
Sbjct: 549 RVTHNLVYDVVASLEKEGWITHTLALHLTTSHREQ 583
>gi|261190052|ref|XP_002621436.1| terminal deoxynucleotidyl transferase [Ajellomyces dermatitidis
SLH14081]
gi|239591264|gb|EEQ73845.1| terminal deoxynucleotidyl transferase [Ajellomyces dermatitidis
SLH14081]
Length = 698
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 95/395 (24%), Positives = 162/395 (41%), Gaps = 64/395 (16%)
Query: 85 VIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSHRKKIK 144
++++ WL+DSL+ G V Y + +A R + G + + +S R ++
Sbjct: 177 ILKFSWLDDSLKAGHAVPLAPYIVY---HARKVAPRDNISVDGTSSNVTSVVASPRSPLR 233
Query: 145 SSTEDVEHFQAESKGDVETNALSEAPN--SPMSSES------------------------ 178
+K D A S APN SP ++ S
Sbjct: 234 PRESPSRAILERAKADA---ASSPAPNHFSPGTARSRRARVQHGPPAQKEPPRLLRETTE 290
Query: 179 LTNTLSTASASPDFSSH---HITDPSLLYNPPDLNKNITEIFGKLINI--YRALGEDRRS 233
T +P + + S NPP+ +LI I R L D
Sbjct: 291 EHEAAETGPPTPAWVRDKLIYACQRSAFLNPPN-----EAFINQLIKIKKIRELTLDEIG 345
Query: 234 F-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEK 290
+Y AI I P+K++S +V LPG + E + G L + D
Sbjct: 346 VRAYSTAIAAIAAYPYKLQSPKEVSTLPGCESKIAILFSEFNQSKDGTLESANQLDTDPV 405
Query: 291 VRTISLFGEVWGIGPATAQKLYEKGH-RTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIP 347
+ ++ F +WG+G TA+ Y H R++DD+ + + L+ Q++G+KYFD+ IP
Sbjct: 406 LSVLNQFYNIWGVGAKTARDFYYHYHWRSIDDVIEQGWNMLSRVQQIGIKYFDEFMAGIP 465
Query: 348 RHEVEQMERLLQKAGEEVLP-----------EVIILCGGSYRRGKASCGDLDVVIMHPDR 396
R EVE + ++ + ++V P E II+ G YRRGK GD+D+++ H D
Sbjct: 466 RSEVESIADIVLQHAKQVRPHSQKDYDGKGIECIIV--GGYRRGKEVSGDVDLILSHRDE 523
Query: 397 KSHKGFLSKYVKKLKEMKFLREDL---IFSTHSEE 428
+ + V L++ ++ L + ++H E+
Sbjct: 524 RVTHNLVYDVVASLEKEGWITHTLALHLTTSHREQ 558
>gi|188997236|ref|YP_001931487.1| PHP domain-containing protein [Sulfurihydrogenibium sp. YO3AOP1]
gi|188932303|gb|ACD66933.1| PHP domain protein [Sulfurihydrogenibium sp. YO3AOP1]
Length = 582
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 90/331 (27%), Positives = 154/331 (46%), Gaps = 44/331 (13%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE---SADQVKGLPGIGK 264
++NK + +IF + +IY L + R+ +Y KA ++E LP I + ++ + GIG
Sbjct: 4 NINKELAKIFKNMSHIYEFLDDKFRALAYVKAAQILEDLPDDIRNYIATGKINDIRGIGS 63
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 323
D I E + TGK+ K E +K + L EV G GP T +++YE+ G DL
Sbjct: 64 HTFDKILEYIKTGKIQKYEELKKLIPEDFLELM-EVPGFGPKTLKRIYEELGINNKKDLI 122
Query: 324 NEDSLTHSQRLGLKYFDDIKTR-----IPRHEVEQMERLLQKA---GEEVLPEVI----- 370
++L + LK F + K + + +E + LL +A GE +L ++
Sbjct: 123 --EALKDGRVAKLKGFGEKKVQNMLKGLELYEASKNRLLLWEALQIGETLLAKLKQLKEI 180
Query: 371 --ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFL------REDLIF 422
I GS RR K + GD+D++I D+ K + Y L+++K + + +I
Sbjct: 181 KNIELAGSLRRRKETIGDIDILISCDDKDRDK--IINYFVNLEDVKEVLAKGDTKASVII 238
Query: 423 STHSEEVYPRDI----YAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGK 478
+V R + + GL +TG+ N R +A+ KG ++ + G+F A
Sbjct: 239 KEKDRQVDLRVLKPEEWGSGLQYFTGSKEHNVHFREIAKQKGLKVSEYGVFDA------- 291
Query: 479 QGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ L TE+EV++ +G W+ P R
Sbjct: 292 ---KTEKRLAGATEEEVYEIVGMQWIPPEMR 319
>gi|54304023|emb|CAH59754.1| DNA polymerase lambda [Homo sapiens]
Length = 167
Score = 87.8 bits (216), Expect = 1e-14, Method: Composition-based stats.
Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 23/167 (13%)
Query: 358 LQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLR 417
+QKA + ++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL
Sbjct: 1 VQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLT 60
Query: 418 EDLIFSTHSEE-----------------------VYPRDIYAFGLIAWTGNDVLNRRLRL 454
+DL+ + + V P +A L+ +TG+ NR +R
Sbjct: 61 DDLVSQEENGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRA 120
Query: 455 LAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGF 501
LA++KG L + L A + V L TEK+VF LG
Sbjct: 121 LAKTKGMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGL 167
>gi|326469542|gb|EGD93551.1| high affinity nickel transporter [Trichophyton tonsurans CBS
112818]
gi|326478931|gb|EGE02941.1| high-affinity nickel transporter [Trichophyton equinum CBS 127.97]
Length = 683
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 87/384 (22%), Positives = 162/384 (42%), Gaps = 61/384 (15%)
Query: 85 VIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGNTSSDGESSHRKKIK 144
VIR W+ +SL+ E + + + + EG I + ++ +T++ ++
Sbjct: 111 VIRLSWVHESLKAREPLPFEQFTVY---EGRKIPKPPTASLEKTSSTTTSPGRCAAQETA 167
Query: 145 SSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDF----------SS 194
++GD +++ P++P + + S SP S+
Sbjct: 168 LHQSPGSSILERARGDTASSSTQFIPSTP------SRRMKATSGSPSVLKQRPKLYRAST 221
Query: 195 HHITDPSLLYNPPDLNKNI---------------TEIFGKLINI--YRALGEDRRSF-SY 236
+ + + +PP+ +N E +L+ + R L D +Y
Sbjct: 222 SDFEEEASIPDPPEWVRNKVVYSCCRSTPLHSPNAEFIDQLLKVKKIRELTLDEVGVRAY 281
Query: 237 YKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSK---LEH---FEKDEK 290
+I + P+K++S ++V LPG ++ I + T K SK LE D
Sbjct: 282 STSIASLSAYPYKLKSPEEVLSLPGC----ENRIANLFTEWKHSKDGILESTLPLTADPA 337
Query: 291 VRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIP 347
+R I F +WG+G +A+ Y +K R LDD+ + D+L+ Q++G+KY+++ T IP
Sbjct: 338 LRVIHSFYNIWGVGAKSARDFYYQKQWRDLDDIVEQGWDTLSRVQQIGVKYYEEFLTGIP 397
Query: 348 RHEVEQMERLLQKAGEEVLP---------EVIILCGGSYRRGKASCGDLDVVIMHPDRKS 398
+ E + + + V P E II+ G YRRGK GD+DV++ H D +
Sbjct: 398 KEETVSIANTILHHAKLVRPDSDFDGKGVECIIV--GGYRRGKEESGDVDVILTHRDERV 455
Query: 399 HKGFLSKYVKKLKEMKFLREDLIF 422
+ V L++ ++ L
Sbjct: 456 TSNLVFDVVASLEQEGWITHTLAL 479
>gi|198417873|ref|XP_002122503.1| PREDICTED: similar to DNA polymerase mu (Pol Mu) [Ciona
intestinalis]
Length = 486
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 77/337 (22%), Positives = 137/337 (40%), Gaps = 75/337 (22%)
Query: 232 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKS-------MQDHIQEIVTTGKLSKLEH 284
R+ S+ + ++ L K+ +Q+ +P + + + I+EI+ G + E
Sbjct: 164 RALSFRRGSASLKALHHKVTHVEQLANIPYVDSTNSSKIGHCKKVIKEILEEGFSDEAEG 223
Query: 285 FEKDEKVRTISLFGEVWGIGPATAQK-LYEKGHRTLDDLKNED-SLTHSQRLGLKYFDDI 342
E +++ +F ++G+GP T +K Y RTL+D++ E+ L Q +G KY++D+
Sbjct: 224 IANSEFYKSMKIFCGIFGVGPNTERKWFYNLKMRTLEDVRKENVHLNKDQAVGFKYYEDL 283
Query: 343 KTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGF 402
+ E + +L+Q + + + G +RRGK DLD++I HP +G
Sbjct: 284 NEPLLLEEANHIAKLVQDTCVALRKDTTVTVVGGFRRGKTKGHDLDLMISHPIEGKEEGL 343
Query: 403 LSKYVKKLKE---------------------------------MKFL------------- 416
L + +LKE KF
Sbjct: 344 LGLILDQLKEHFVYTEKKGSIKKVTTPSDSKNTMDHFEKCFSIFKFQPQWVGRSCPSGKG 403
Query: 417 ----REDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPAT 472
R DLI + S+ +AF ++ WTG R +R A S+
Sbjct: 404 WTAKRVDLIVVSKSQ-------FAFAVLGWTGTKHFEREIRRYARSEK---------KIV 447
Query: 473 YGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
S G + + S +TE+++F+ LG +L P+ER
Sbjct: 448 LTSHGMYDLDMKESYAAETEEDIFNKLGLKYLPPNER 484
>gi|225851436|ref|YP_002731670.1| DNA polymerase beta family [Persephonella marina EX-H1]
gi|225645277|gb|ACO03463.1| DNA polymerase beta family [Persephonella marina EX-H1]
Length = 586
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 157/337 (46%), Gaps = 46/337 (13%)
Query: 203 LYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIES---ADQVKGL 259
+YN +N+++ IF K+ IY L + R+ +Y +A +IE LP I + + ++ +
Sbjct: 1 MYN---INRDLANIFKKMAAIYEFLDDRFRAMAYQRAAHIIEDLPEDIRNYIVSGKLYMI 57
Query: 260 PGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRT 318
GIG S+ I+E V TGK+ K E +K I L ++ G GP T +K++ E G T
Sbjct: 58 RGIGPSIASKIEEYVKTGKIQKFEELKKQVPEDFIELI-DLPGFGPKTLKKIHDELGIST 116
Query: 319 LDDLKNEDSLTHSQRL-------------GLKYFDDIKTRIPRHEVEQMERLLQKAGEEV 365
++L ++L GL+ ++ K RI E Q+ L++ +
Sbjct: 117 KEELVKALKDGRVEKLEGFGPKKVENMLKGLQMYEISKRRIILWEALQISEYLKEKLKSG 176
Query: 366 LPEV-IILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFL------RE 418
L E+ I GS RR K + GD+D+++ D+ K + + ++E+ + +
Sbjct: 177 LKEIKKIEVAGSVRRRKETIGDIDILVTAEDKYRSK--IMDFFTSIEEVSEVLVKGPKKS 234
Query: 419 DLIFSTHSEE------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPAT 472
+I +E ++ D + L +TG+ N LR +A+ KG ++++ G+F A
Sbjct: 235 SVIMKFEGKERQVDLRIFNDDEWGAALQYFTGSKQHNVHLREIAKEKGLKINEYGVFDA- 293
Query: 473 YGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ + +TE+ V+ +G W+ P R
Sbjct: 294 ---------KTDKKIAGETEESVYQSVGLKWIPPELR 321
>gi|402863620|ref|XP_003896105.1| PREDICTED: DNA-directed DNA/RNA polymerase mu isoform 2 [Papio
anubis]
Length = 457
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/331 (22%), Positives = 138/331 (41%), Gaps = 57/331 (17%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N +++E L G + R ++ +A V++ LP + + Q++GLP +G+
Sbjct: 153 NTSLSEALETLAEAAGFEGSEGRLLTFCRAASVLKALPSPVTTLSQLQGLPHLGEHSSRV 212
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 328
+QE++ G ++E E+ +T+ LF +++G+G TA + Y +G RTLDDL+ + L
Sbjct: 213 VQELLELGVCKEVERVRCSERYQTMKLFTQIFGVGVRTADRWYREGLRTLDDLREQPQKL 272
Query: 329 THSQRLGLKYFDD----IKTRIPRHEVEQMERLLQKAG----EEVLPEVIILCGGSYRRG 380
T Q+ + ++ R P G + LP+ +IL Y +
Sbjct: 273 TQQQKAAPPGSEHPSPAVRCRCPAAGSGGSCGAGPAWGHRHADRRLPQGLIL----YHQH 328
Query: 381 KASCGDLDVVIMHPDRKSHKGFLSKY--------------------VKKLKEMKFLREDL 420
+ S + P R + + + + + K +R DL
Sbjct: 329 QHSRWE------SPTRLAQQSHMDTFERSFCIFRLPQPPGAAVGGSTRPCASWKAVRVDL 382
Query: 421 IFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPATYGSGGKQ 479
+ V P + F L+ WTG+ + LR + + KG L+ GLF
Sbjct: 383 V-------VAPISQFPFALLGWTGSKLFQWELRRFSRKEKGLWLNSHGLF---------- 425
Query: 480 GVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+T +E+++F LG +L P +RN
Sbjct: 426 DPEQKTFFHVTSEEDIFRHLGLEYLPPEQRN 456
>gi|238588542|ref|XP_002391755.1| hypothetical protein MPER_08770 [Moniliophthora perniciosa FA553]
gi|215456861|gb|EEB92685.1| hypothetical protein MPER_08770 [Moniliophthora perniciosa FA553]
Length = 173
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 85/148 (57%), Gaps = 7/148 (4%)
Query: 210 NKNITEIFGKLINIYRALG---EDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSM 266
N+N+ + +L+ ++RA E R +SY +AI + P +I+S + + + G+GK
Sbjct: 26 NQNVVDKLQELLELHRAKPGKEEGWRVYSYTRAIRALRSYPKRIKSLKKAEAIDGVGKKT 85
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL---K 323
I EI+ TG L +L+ +E+ + V + L ++G+G +TA K Y+ G RTL+DL K
Sbjct: 86 ALKIMEIIETGDLKRLK-YERTDMVEVLQLLQGIYGVGQSTAVKWYQNGCRTLEDLRKGK 144
Query: 324 NEDSLTHSQRLGLKYFDDIKTRIPRHEV 351
L+ +Q++GL+Y+D + P EV
Sbjct: 145 GGIKLSRAQKIGLQYYDGVSVTYPFGEV 172
>gi|443896495|dbj|GAC73839.1| DNA polymerase IV [Pseudozyma antarctica T-34]
Length = 570
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 93/377 (24%), Positives = 155/377 (41%), Gaps = 96/377 (25%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIES----AD----------- 254
N+ + E + N R G+ +Y +AI ++ PF I AD
Sbjct: 213 NQMLVEQLELIRNERRLTGDTYAEMAYMRAISALKAYPFHIPDSVTDADFSAELRDLRLA 272
Query: 255 QVKGLPGIGKSMQDHIQEIVTT-----GKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQ 309
+V+ L G+GK + +++ + ++ + + ++D V ++ F E++GIGP A+
Sbjct: 273 EVEKLKGVGKKVFSLVRQFYHSTSTQEARIVEAKVIQRDRAVFVMNAFAELYGIGPIGAR 332
Query: 310 KLYEKGHRTLDD-LKNEDSL-TH-SQRLGLKYFDDIKTRIPRHEVE----QMERLLQKA- 361
+ Y G R+ D L+ + SL TH S + ++ D++ I R E E ++ RLL +
Sbjct: 333 EAYNAGARSFRDVLERKKSLATHLSAKESVRILADLRQPIGRVECESIADEIMRLLTQLM 392
Query: 362 -GEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP------------DRKSHKGFLSKYVK 408
G EV ++ CGG YRRGK DLD++I H D +G ++ V
Sbjct: 393 RGAEVRWQI---CGG-YRRGKPRTYDLDIIIGHTLTASRALHVQLLDDMKKRGLITHIVN 448
Query: 409 ----------------------KLKEMKFL------------REDLIFSTHSEEVYPRDI 434
+ + L R DL+F P +
Sbjct: 449 ISTPHINLEADPDPSAPPPVHIDIANIVVLPPASGAHRALHRRVDLVFC-------PLHV 501
Query: 435 YAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKE 494
Y ++ WTG+ R LRL A +KG+ GL + T + TE++
Sbjct: 502 YGATVLGWTGSLTFERDLRLWARTKGFNFSFDGL----------TNLAENTLVPTATERD 551
Query: 495 VFDFLGFPWLEPHERNL 511
VF+ L P++ P RN
Sbjct: 552 VFELLQLPYMPPEWRNC 568
>gi|393212574|gb|EJC98074.1| Nucleotidyltransferase [Fomitiporia mediterranea MF3/22]
Length = 476
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 86/171 (50%), Gaps = 14/171 (8%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGK--------LSKLEHFE 286
++ A ++ LP I S ++ + G+GK + I ++ G + E
Sbjct: 73 AFQHAFKALDALPQAITSGEEALKVVGVGKGIARRIDVYLSQGAEGSSPKPAAPPKKTPE 132
Query: 287 KDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED---SLTHSQRLGLKYFDDIK 343
E+ RT+ F V GIG A++LY+ G R+LDDL+N + SL+ R L Y D +
Sbjct: 133 DIERERTLLEFRRVPGIGQVKAKRLYDAGCRSLDDLRNPEHFKSLSAPIRAALDYVDHLS 192
Query: 344 TRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
R+ R E+E + ++ G + E + GSYRRG SCGD+D++ HP
Sbjct: 193 ERVTRAEIETVTNII---GPLISSETRMHAVGSYRRGLPSCGDVDIIFFHP 240
>gi|337289031|ref|YP_004628503.1| PHP domain-containing protein [Thermodesulfobacterium sp. OPB45]
gi|334902769|gb|AEH23575.1| PHP domain protein [Thermodesulfobacterium geofontis OPF15]
Length = 606
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 89/332 (26%), Positives = 145/332 (43%), Gaps = 54/332 (16%)
Query: 210 NKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIES---ADQVKGLPGIGKS 265
NK + EIF K+ + G++ R +Y KA IE L IE +++ LPGIG
Sbjct: 33 NKEVAEIFNKVAALLEIKGDNPYRIRAYQKAAQTIEALTTDIEELARQGKLEKLPGIGAD 92
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKN 324
+ I+EI+ TG LS E +K+ + + F E+ +GP + LYEK G +++L+
Sbjct: 93 LAGKIKEILRTGTLSLYEELKKEIPLVLLD-FLEIPSLGPKKVKVLYEKLGITNIEELEK 151
Query: 325 EDSLTHSQRL-------------GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII 371
+L G+ F + + R P EV + + + + P I
Sbjct: 152 ACKEHKIAKLPGFGWKTEENILKGIALFREKRGRRPLGEVLPLAEEIIETLKRESPVENI 211
Query: 372 LCGGSYRRGKASCGDLDVVI--MHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEV 429
GS RR K + D+D++I + P+ K +KK+ E+ + E + F V
Sbjct: 212 AVAGSIRRKKETVKDIDILITSVQPE---------KVMKKVTELPLVEEVIAFGETKTSV 262
Query: 430 YPR------------DIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGG 477
R D + L +TG+ N R+R LA KG ++++ G+F G
Sbjct: 263 RLRTGIQMDVRVVEPDSWGAALAYFTGSKAHNIRVRELALEKGLKINEYGVFRGEEKIAG 322
Query: 478 KQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
K TE+EV+ +G P++ P R
Sbjct: 323 K------------TEEEVYASIGLPFIPPELR 342
>gi|321257082|ref|XP_003193463.1| beta DNA polymerase [Cryptococcus gattii WM276]
gi|317459933|gb|ADV21676.1| beta DNA polymerase, putative [Cryptococcus gattii WM276]
Length = 556
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 78/349 (22%), Positives = 138/349 (39%), Gaps = 97/349 (27%)
Query: 234 FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRT 293
SY +++ +++ +P +I S + L G+G+ + I E + TG++++ + +
Sbjct: 230 LSYRRSLSMLKSVPRRITSGKEALRLQGVGEKVASRIDEFLQTGEIAESQEILASPRYNA 289
Query: 294 ISLFGEVWGIGPATAQKLYEKGH-RTLDDLKNEDSLTHSQRLGLKYFDD----------- 341
+ F V+ IG A++LYE+ H RTL+D+K +YF D
Sbjct: 290 LQTFASVYTIGHFRAKELYERHHCRTLEDVK-------------RYFADMEKDGEAEQGR 336
Query: 342 ----------------------IKTRI-PRHEVEQMERLLQKAGEEVLPEV-IILCGGSY 377
+K + + EVE++ + + E +P +CGG Y
Sbjct: 337 GKGRRRMRGGMKEYEIVEEWMKLKNELDQKEEVEEIAACVLENLEAFIPNCEYTICGG-Y 395
Query: 378 RRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE--------- 428
RRGK D+D+V P G L +L E++ + ++ TH +
Sbjct: 396 RRGKTQSSDVDIVFRPPKDDQDIGLLRALYLRLSELRIVTH-VLHVTHRDPNQPIRAAAQ 454
Query: 429 ---------------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGY 461
PRD YA +++WTG+ + R L+ AE++
Sbjct: 455 NFDNLDKAFVIFKLPGKGRLHRRVDLISAPRDRYASAVLSWTGSMMFERDLKRYAENETG 514
Query: 462 RLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
GL G + +TE+E+FD+LG ++ P RN
Sbjct: 515 HKFRAGLIKIATGE----------EINLETEREIFDYLGLRYIPPELRN 553
>gi|397779769|ref|YP_006544242.1| DNA polymerase (family X) [Methanoculleus bourgensis MS2]
gi|396938271|emb|CCJ35526.1| DNA polymerase (family X) [Methanoculleus bourgensis MS2]
Length = 576
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 90/319 (28%), Positives = 141/319 (44%), Gaps = 39/319 (12%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPV-IEKLPFKIESADQ--VKGLPGIGKSM 266
N+++ E + + G D+ Y +E+L + D+ + +PGIG +
Sbjct: 29 NRDVAEQLALMGRLLEVAGADQHRAGAYARAARQVERLSIPVAGLDEEALTRIPGIGVRI 88
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNE 325
IQEI TG +L+ + I L +V G+GP T L++K G +T+DDL E
Sbjct: 89 AAQIQEIAGTGSFRELDDLQATIPGSVIDLL-DVSGVGPRTLHTLWKKLGIQTIDDL--E 145
Query: 326 DSLTHSQRLGLKYF----DDIKTRIPRHEVEQMERLLQKAGEEVLPEVIIL-------CG 374
++ + GL+ F ++ R R E+ R+ + + VL V L
Sbjct: 146 AAVKGRRIRGLRGFGAKKEEAIGRGIRRYRERSNRMTRPQADAVLGSVAALFPDGQYAVA 205
Query: 375 GSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEVYPR-- 432
GSYRRG ++ G +D+V DR + + + E K E++ S V R
Sbjct: 206 GSYRRGASTVGKIDIVTT-ADRAA---LMDHLLAGPGEDK---EEVSLSISGARVNVRFT 258
Query: 433 --DIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFD 490
D Y L+ TG+ RL +A+ +GYRL+ GL +T SG Q F
Sbjct: 259 DPDQYGTALLCATGSGAFLARLAAVAQEQGYRLEPGGLVEST--SGRLQ--------AFG 308
Query: 491 TEKEVFDFLGFPWLEPHER 509
+E+EVF FLG + P R
Sbjct: 309 SEEEVFGFLGMETVPPELR 327
>gi|55981119|ref|YP_144416.1| DNA polymerase beta family protein [Thermus thermophilus HB8]
gi|374074063|pdb|3AU2|A Chain A, Dna Polymerase X From Thermus Thermophilus Hb8 Complexed
With Ca-Dgtp
gi|374074064|pdb|3AU6|A Chain A, Dna Polymerase X From Thermus Thermophilus Hb8 Ternary
Complex With PrimerTEMPLATE DNA AND DDGTP
gi|374074067|pdb|3AUO|A Chain A, Dna Polymerase X From Thermus Thermophilus Hb8 Ternary
Complex With 1- Nt Gapped Dna And Ddgtp
gi|374074068|pdb|3AUO|B Chain B, Dna Polymerase X From Thermus Thermophilus Hb8 Ternary
Complex With 1- Nt Gapped Dna And Ddgtp
gi|55772532|dbj|BAD70973.1| DNA polymerase beta family (X family) [Thermus thermophilus HB8]
Length = 575
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 101/332 (30%), Positives = 152/332 (45%), Gaps = 50/332 (15%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIE-----SADQVKGLPGIG 263
N+ + IF ++ + LG++ R +Y++A + L IE + + LPG+G
Sbjct: 3 NQELARIFEEIGLMSEFLGDNPFRVRAYHQAARTLYDLDTPIEEIAEKGKEALMELPGVG 62
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKV-RTISLFGEVWGIGPATAQKLYEK-GHRTLDD 321
+ + I E + TGK+ K H E KV R + EV G+GP TA+ LYE G +L+
Sbjct: 63 PDLAEKILEFLRTGKVRK--HEELSRKVPRGVLEVMEVPGVGPKTARLLYEGLGIDSLEK 120
Query: 322 LK---NEDSLTHSQRLGLKYFDDIK----------TRIPRHEVEQMERLLQKAGEEVLPE 368
LK + LT + G K + I+ R P V + R L +A LP
Sbjct: 121 LKAALDRGDLTRLKGFGPKRAERIREGLALAQAAGKRRPLGAVLSLARSLLEA-IRALPG 179
Query: 369 V--IILCGGSYRRGKASCGDLDVVIMHPD-RKSHKGFL------SKYVK-KLKEMKFLRE 418
V LCG S RR K + GDLD ++ + ++ +GF+ Y K K + FL+
Sbjct: 180 VERAELCG-SARRYKDTVGDLDFLVASREGERAVEGFVRLPQVKEVYAKGKERATVFLKN 238
Query: 419 DLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGK 478
L V P + Y GL TG+ + RLR LA+ KG +L + G+F
Sbjct: 239 GLQVDLR---VVPPESYGAGLQYLTGSKAHSIRLRALAQEKGLKLSEYGVF--------- 286
Query: 479 QGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
R + +TE+EV+ LG PW+ P R
Sbjct: 287 ---RGEKRIAGETEEEVYAALGLPWIPPPLRE 315
>gi|385867296|pdb|3B0X|A Chain A, K263a Mutant Of Polx From Thermus Thermophilus Hb8
Complexed With Ca- Dgtp
Length = 575
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 101/332 (30%), Positives = 152/332 (45%), Gaps = 50/332 (15%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIE-----SADQVKGLPGIG 263
N+ + IF ++ + LG++ R +Y++A + L IE + + LPG+G
Sbjct: 3 NQELARIFEEIGLMSEFLGDNPFRVRAYHQAARTLYDLDTPIEEIAEKGKEALMELPGVG 62
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKV-RTISLFGEVWGIGPATAQKLYEK-GHRTLDD 321
+ + I E + TGK+ K H E KV R + EV G+GP TA+ LYE G +L+
Sbjct: 63 PDLAEKILEFLRTGKVRK--HEELSRKVPRGVLEVMEVPGVGPKTARLLYEGLGIDSLEK 120
Query: 322 LK---NEDSLTHSQRLGLKYFDDIK----------TRIPRHEVEQMERLLQKAGEEVLPE 368
LK + LT + G K + I+ R P V + R L +A LP
Sbjct: 121 LKAALDRGDLTRLKGFGPKRAERIREGLALAQAAGKRRPLGAVLSLARSLLEA-IRALPG 179
Query: 369 V--IILCGGSYRRGKASCGDLDVVIMHPD-RKSHKGFL------SKYVK-KLKEMKFLRE 418
V LCG S RR K + GDLD ++ + ++ +GF+ Y K K + FL+
Sbjct: 180 VERAELCG-SARRYKDTVGDLDFLVASREGERAVEGFVRLPQVKEVYAKGKERATVFLKN 238
Query: 419 DLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGK 478
L V P + Y GL TG+ + RLR LA+ KG +L + G+F
Sbjct: 239 GLQVDLR---VVPPESYGAGLQYLTGSAAHSIRLRALAQEKGLKLSEYGVF--------- 286
Query: 479 QGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
R + +TE+EV+ LG PW+ P R
Sbjct: 287 ---RGEKRIAGETEEEVYAALGLPWIPPPLRE 315
>gi|408383066|ref|ZP_11180605.1| PHP domain-containing protein [Methanobacterium formicicum DSM
3637]
gi|407814174|gb|EKF84806.1| PHP domain-containing protein [Methanobacterium formicicum DSM
3637]
Length = 566
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 89/337 (26%), Positives = 148/337 (43%), Gaps = 65/337 (19%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKI---ESADQVKGLPGIGKSM 266
N + I ++ + G D R+ +Y +A IE L + + +++ LPGIGK +
Sbjct: 3 NHKVASILQQVADYLELDGVDFRTKAYRRAAHTIETLSVDVADMQKQGKLEELPGIGKHI 62
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNE 325
+ I+EI+ TG L LE+ K E + +V G+GP + LY E G + LDDL+ E
Sbjct: 63 HEKIEEILETGNLEYLENL-KSEFPLDMDALMQVEGLGPKKIKLLYQELGIKNLDDLEKE 121
Query: 326 DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILC------------ 373
H +RL + T+ ++ +E + G ++L +V+ L
Sbjct: 122 AKRHHIRRL-----KGMGTKTEAEILQNIEFARKSIGRQLLGDVLPLAIEIKQRISTLDT 176
Query: 374 ------GGSYRRGKASCGDLDV--VIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTH 425
GS RR K + GD+D+ V HPD + + +M + E +I H
Sbjct: 177 VDQVQIAGSIRRRKETVGDIDILTVTQHPD---------EVMDYFTQMDLVGE-VIVKGH 226
Query: 426 SEE-------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPAT 472
++ V+ + ++ +TG+ LN LR +A SK +L++ G+F
Sbjct: 227 AKSTVRLYNGMDADIRVFKESDFGSAMVYFTGSRELNIVLRKIALSKSMKLNEYGVF--- 283
Query: 473 YGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
++ VR L TE EVF LG ++ P R
Sbjct: 284 -----QEDVR----LAGQTESEVFRALGLDYIPPELR 311
>gi|46199091|ref|YP_004758.1| DNA-dependent DNA polymerase beta chain [Thermus thermophilus HB27]
gi|46196715|gb|AAS81131.1| DNA-dependent DNA polymerase beta chain [Thermus thermophilus HB27]
Length = 575
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 101/332 (30%), Positives = 153/332 (46%), Gaps = 50/332 (15%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIE-----SADQVKGLPGIG 263
N+ + IF ++ + LG++ R +Y++A + L IE + + LPG+G
Sbjct: 3 NQELARIFEEIGLMSEFLGDNPFRVRAYHQAARTLYDLDTPIEEIAEKGKEALMELPGVG 62
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKV-RTISLFGEVWGIGPATAQKLYEK-GHRTLDD 321
+ + I E + TGK+ K H E +KV R + EV G+GP TA+ LYE G +L+
Sbjct: 63 PDLAEKILEFLRTGKVRK--HEELSQKVPRGVLEVMEVPGVGPKTARLLYEGLGIDSLEK 120
Query: 322 LK---NEDSLTHSQRLGLKYFDDIK----------TRIPRHEVEQMERLLQKAGEEVLPE 368
LK + LT + G K + I+ R P V + R L +A LP
Sbjct: 121 LKAALDRGDLTRLKGFGPKRAERIREGLALAQAAGKRRPLGAVLSLARSLLEAIRG-LPG 179
Query: 369 V--IILCGGSYRRGKASCGDLDVVIMHPD-RKSHKGFL------SKYVK-KLKEMKFLRE 418
V LCG S RR K + GDLD ++ + ++ +GF+ Y K K + FL+
Sbjct: 180 VERAELCG-SARRYKDTVGDLDFLVASREGERAVEGFVRLPQVKEVYAKGKERATVFLKN 238
Query: 419 DLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGK 478
L V P + Y GL TG+ + RLR LA+ KG +L + G+F
Sbjct: 239 GLQVDLR---VVPPESYGAGLQYLTGSKAHSIRLRALAQEKGLKLSEYGVF--------- 286
Query: 479 QGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
R + +TE+EV+ LG PW+ P R
Sbjct: 287 ---RGEKRIAGETEEEVYAALGLPWIPPPLRE 315
>gi|299472566|emb|CBN80507.1| DNA polymerase mu [Ectocarpus siliculosus]
Length = 587
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 111/218 (50%), Gaps = 25/218 (11%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N IT++ + +Y+ +G+ +R+ S+ + V+ L I S +++ + +G+ M +
Sbjct: 201 NHEITDVLDAMTKMYKVVGDGQRADSFMRLSSVLRFLDRTIRSGSEIRHVHHVGERMVEA 260
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDD-----LKN 324
+ EI+ TG L +LE + + + +V G+G TA+ Y +G R+++D L N
Sbjct: 261 VDEILATGTLGRLEELKSHPRNQVCQQLMKVHGVGSRTAKDWYNRGIRSVEDARRTLLPN 320
Query: 325 EDSLTHSQR---------LGLKYFDDIKTRIPRHEV----EQMERLLQKAGEEVLPEVII 371
+D ++ +GLK+F D++ I R EV +++ ++ G E PE +
Sbjct: 321 DDDTEGDEKRPNLKPEVVMGLKHFHDMQVPIGRDEVVGIADEVREEAERFGRERDPEGTL 380
Query: 372 L---CGGSYRRGKASCGDLDVVIMH---PDRKSHKGFL 403
L CGG +RRGK + D+DV++ H+GF+
Sbjct: 381 LFEVCGG-FRRGKETLHDVDVLVSFRRGNGEPGHQGFV 417
>gi|325959164|ref|YP_004290630.1| PHP domain-containing protein [Methanobacterium sp. AL-21]
gi|325330596|gb|ADZ09658.1| PHP domain protein [Methanobacterium sp. AL-21]
Length = 569
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 93/332 (28%), Positives = 148/332 (44%), Gaps = 54/332 (16%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESA---DQVKGLPGIGKSM 266
N+ + I ++ ++ D R+ +Y +A +E IE +++ LPGIG +
Sbjct: 3 NQLVASILNQVADLMEMESVDFRTKAYRRAAHTVEIQSEAIEDIRKQGKLQDLPGIGGKI 62
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNE 325
I+EI+ TG L LE+ +K+ V L V G+GP ++LY E G ++LDDL+ +
Sbjct: 63 AGKIEEIIDTGSLKYLENLKKEFPVNYDELM-TVEGLGPKGIKQLYQELGVKSLDDLEKQ 121
Query: 326 DSLTHSQRL---GLKYFDDIKTRIPRHE--------------VEQMERLLQKAGEEVLPE 368
H +RL G K +I + + +++ LL+ GE+ +
Sbjct: 122 AKNHHIRRLKGMGEKTERNILVNLGFAKKSGGRSLIGDILPVATKIKDLLR--GEDYVDR 179
Query: 369 VIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY-----------VKKLKEMKFLR 417
V I GS RR K + GD+DV++ P F +K K +K
Sbjct: 180 VEI--AGSIRRMKETVGDIDVLVTTPKPLEVMDFFTKMDMVDDVVVSGPTKSTVRLKETG 237
Query: 418 EDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGG 477
D+ T S+E + L+ +TG+ N LR LA S GY+L++ G+F G
Sbjct: 238 MDVDIRTFSDES-----FGSALMYFTGSKETNVELRKLAISLGYKLNEYGVFDGDELVAG 292
Query: 478 KQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
TEKEVF+ LG ++EP R
Sbjct: 293 T------------TEKEVFNSLGMDYIEPELR 312
>gi|67539888|ref|XP_663718.1| hypothetical protein AN6114.2 [Aspergillus nidulans FGSC A4]
gi|40738899|gb|EAA58089.1| hypothetical protein AN6114.2 [Aspergillus nidulans FGSC A4]
gi|259479696|tpe|CBF70157.1| TPA: terminal deoxynucleotidyl transferase, putative
(AFU_orthologue; AFUA_2G08840) [Aspergillus nidulans
FGSC A4]
Length = 665
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 92/192 (47%), Gaps = 18/192 (9%)
Query: 247 PFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVRTISLFGEVWGIG 304
P++I Q+ LPG + + E + G L+ E +KD +RT+ F +WG+G
Sbjct: 331 PYEIRRGSQILSLPGCDSKIANLFVEFKASESGTLAAAEALDKDPDLRTLHTFYNIWGVG 390
Query: 305 PATAQK-LYEKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKA 361
TA++ Y + R LDD+ SL+ Q++G+KY+D+ IPR E E + +++ +
Sbjct: 391 SKTAREFFYARQWRDLDDIVEHGWHSLSRVQQIGVKYYDEFLLDIPREETEAIGKIICQH 450
Query: 362 GE--EVLP---------EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 410
V P E II+ GSYRRGK D+D+++ H D + V L
Sbjct: 451 ANSASVRPTAQYDGHGVECIIV--GSYRRGKPVSHDVDIILSHRDEAITHNLVVDVVASL 508
Query: 411 KEMKFLREDLIF 422
+ ++ L
Sbjct: 509 ESEGWITHTLAL 520
>gi|386360348|ref|YP_006058593.1| DNA polymerase IV [Thermus thermophilus JL-18]
gi|383509375|gb|AFH38807.1| DNA polymerase IV (family X) [Thermus thermophilus JL-18]
Length = 575
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 101/334 (30%), Positives = 154/334 (46%), Gaps = 54/334 (16%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIE-----SADQVKGLPGIG 263
N+ + IF ++ + LG++ R +YY+A + L IE + + LPG+G
Sbjct: 3 NQELARIFEEIGLMSEFLGDNPFRVRAYYQAARTLYDLDTPIEEIAEKGKEALMELPGVG 62
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKV-RTISLFGEVWGIGPATAQKLYEK-GHRTLDD 321
+ + I E + TGK+ K H E +KV R + EV G+GP TA+ LYE G +L+
Sbjct: 63 PDLAEKILEFLRTGKVRK--HEELSQKVPRGVLEVMEVPGVGPKTARLLYEGLGIDSLEK 120
Query: 322 LK---NEDSLTHSQRLGLKYFDDIK----------TRIPRHEVEQMERLLQKAGEEVLPE 368
LK + LT + G K + I+ R P V + R L +A LP
Sbjct: 121 LKEALDRGDLTRLKGFGPKKAERIREGLALAQAAGKRRPLGAVLSLARSLLEAIRG-LPG 179
Query: 369 V--IILCGGSYRRGKASCGDLDVVIMHPD-RKSHKGFLSKYVKKLKEM---------KFL 416
V LCG S RR K + GDLD ++ + + +GF+ + ++KE+ FL
Sbjct: 180 VERAELCG-SARRYKDTVGDLDFLVASREGERVVEGFVR--LPQVKEVFAKGKERATVFL 236
Query: 417 REDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSG 476
+ L V P + Y GL TG+ + RLR LA+ KG +L + G+F
Sbjct: 237 KNGLQVDLR---VVPPESYGAGLQYLTGSKAHSIRLRALAQEKGLKLSEYGVF------- 286
Query: 477 GKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
R + +TE+EV+ LG PW+ P R
Sbjct: 287 -----RGEKRIAGETEEEVYAALGLPWIPPPLRE 315
>gi|380487421|emb|CCF38050.1| hypothetical protein CH063_09247 [Colletotrichum higginsianum]
Length = 607
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 72/334 (21%), Positives = 126/334 (37%), Gaps = 98/334 (29%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
+Y +I + P+ I + +V LPG G + + E +G+L +++ + D ++ +
Sbjct: 264 AYSTSIATLSAYPYAIATPQEVARLPGCGVKVAELWHEWKESGRLCEVDEAQADPRLSVV 323
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQM 354
F ++WG+G TA+ Y + D + L H++ + +
Sbjct: 324 KKFYDIWGVGDITARDFYNRVESIADTI-----LVHARNINPGF---------------- 362
Query: 355 ERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMK 414
E++I+ G YRRGK GD+DVVI H D + F++K V L++ +
Sbjct: 363 -------------ELVIV--GGYRRGKQGSGDVDVVISHRDESATLHFVNKLVVSLEKSR 407
Query: 415 FLREDLIFSTHSEE-------------------------------------VYPRD---- 433
+ L S H+ E YP++
Sbjct: 408 HITHTLTLSNHNSERGQRPVXWKGNESKGCGFDTLDKALVVWQELEIESHKRYPKNEREA 467
Query: 434 ------------IYAFGLIAWTGNDVLNRRL-RLLAESKGYRLDDTGLFPATYGS----- 475
++ W+G+ R L R + K ++ D +G+ GS
Sbjct: 468 APAGGHHHQPWKTVGCAVLGWSGDTTFQRDLRRYCKKQKSFKFDSSGIRSRVDGSWIDLE 527
Query: 476 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
GGK G + EK VF+ LG W+ P +R
Sbjct: 528 GGKLG---KAPDMLTAEKRVFEGLGLEWVRPEDR 558
>gi|119570148|gb|EAW49763.1| polymerase (DNA directed), lambda, isoform CRA_g [Homo sapiens]
Length = 106
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 63/98 (64%), Gaps = 2/98 (2%)
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE 325
M + I EI+ +G L KL+H E V + LF +WG G TAQ Y++G R+L+D++++
Sbjct: 1 MAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQ 58
Query: 326 DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGE 363
SLT Q +GLK++ D R+PR E ++E+ +QKA +
Sbjct: 59 ASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQ 96
>gi|303312517|ref|XP_003066270.1| hypothetical protein CPC735_054950 [Coccidioides posadasii C735
delta SOWgp]
gi|240105932|gb|EER24125.1| hypothetical protein CPC735_054950 [Coccidioides posadasii C735
delta SOWgp]
Length = 731
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 95/202 (47%), Gaps = 16/202 (7%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVR 292
+Y +I I P+ +++ ++V +PG + + E + G L + D
Sbjct: 347 AYSTSIAAIAAYPYPLQTPEEVLTIPGCETRIANWFAEWKQSPDGILEAANQLDTDPVYS 406
Query: 293 TISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRH 349
T+++F +WG+G +A+ Y + R LDD+ DSL+ Q++G+KY+D+ I R
Sbjct: 407 TLNMFYNIWGVGAKSARDFYYHRNWRDLDDVVEHGWDSLSRVQQIGVKYYDEFMEGITRA 466
Query: 350 EVEQMERLLQKAGEEVLP---------EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHK 400
EVE + ++ + P E II+ G YRRGK GD+D+++ H D
Sbjct: 467 EVESISHVVLEHARRARPDSDYDGKGIECIIV--GGYRRGKERSGDVDIILSHRDEGVTH 524
Query: 401 GFLSKYVKKLKEMKFLREDLIF 422
+ V L+E ++ L
Sbjct: 525 NLVYDVVSSLEEDGWITHTLAL 546
>gi|323508140|emb|CBQ68011.1| related to DNA polymerase mu [Sporisorium reilianum SRZ2]
Length = 612
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 90/367 (24%), Positives = 142/367 (38%), Gaps = 95/367 (25%)
Query: 222 NIYRALGEDRRSFSYYKAIPVIEKLPFKIESA-----------------DQVKGLPGIGK 264
N R G+ +Y +AI ++ PF I +V+ L G+GK
Sbjct: 262 NERRLTGDTYSEMAYMRAISALKAYPFPIPDPVLDPPHVFDAALLAVRLGEVEKLKGVGK 321
Query: 265 SMQDHIQEIVTT------GKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRT 318
+ I++ + G++ + + +D V ++ E++GIGP A++ Y G R+
Sbjct: 322 KVFSLIRQFYSRCEAGAGGRIVEAKVIRRDRAVYVMNALTELYGIGPIGARQAYNAGARS 381
Query: 319 LDDL--KNEDSLTH-SQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP---EVII- 371
D+ + + TH S + ++ D++ I R E + + VLP EV
Sbjct: 382 FADVLHRGKSLATHLSAKESVRILGDLRKPIGRDECRAITEDIMTLVRSVLPHDAEVKYE 441
Query: 372 LCGGSYRRGKASCGDLDVVIMH---PDRKSH---------KGFLSKYVK----------- 408
+CGG YRRGKA DLDV+I H P R H KG ++ V
Sbjct: 442 ICGG-YRRGKAHTFDLDVIIGHGEAPSRALHMRLLDEMKRKGLITHIVNVSTPAPSDLDP 500
Query: 409 ------------KLKEMKFL------------REDLIFSTHSEEVYPRDIYAFGLIAWTG 444
+ + L R DL+F P +Y ++ WTG
Sbjct: 501 DPTPHTAGAVHIDIANIVVLPTPSSAAKPVHRRVDLVFC-------PLRVYGATVLGWTG 553
Query: 445 NDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWL 504
+ R LRL A+SKG+ GL + ++ E +VFD LG W+
Sbjct: 554 SLTFERDLRLWAKSKGFNFSFDGL----------TNLAEECLVETRDESDVFDALGLEWM 603
Query: 505 EPHERNL 511
P R
Sbjct: 604 PPEWRKC 610
>gi|45190568|ref|NP_984822.1| AEL039Wp [Ashbya gossypii ATCC 10895]
gi|44983510|gb|AAS52646.1| AEL039Wp [Ashbya gossypii ATCC 10895]
gi|374108044|gb|AEY96951.1| FAEL039Wp [Ashbya gossypii FDAG1]
Length = 508
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 9/191 (4%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGK 264
P + N + +L R GE R+ +Y A + +LP+ I++ +Q + LP +G
Sbjct: 130 TPLEGNAKVACALQQLAERCRLQGEAFRNRAYLLAREAVLELPYSIQTYEQARSLPNVGD 189
Query: 265 SMQDHIQEIVTTGKLSKLE-HFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 323
+ I + G + LE DE++ + F +GP AQ+ G + D+
Sbjct: 190 GIAQKIALLAAGGSVPGLELELTPDERI--VRYFAACHDVGPGRAQQWRALGFESFADVL 247
Query: 324 NEDS---LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRG 380
L + G+++++D + RIPR EV + +L++ + VI GSY RG
Sbjct: 248 RASPQWRLPWAMLYGMRFYEDWQLRIPRDEVGEHAAVLEQCAPAGMSVVI---AGSYSRG 304
Query: 381 KASCGDLDVVI 391
+CGD+DVV+
Sbjct: 305 STTCGDIDVVL 315
>gi|58737085|dbj|BAD89435.1| DNA polymerase mu [Coprinopsis cinerea]
Length = 608
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 89/409 (21%), Positives = 151/409 (36%), Gaps = 126/409 (30%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESAD---QVKGLPGIGKSM 266
N+++ E L G + +Y +A+ VI+ P KI+ + +V LPG+G +
Sbjct: 215 NQDLVEALSVLCRDRELEGLHPNALAYQRAVAVIKSYPHKIDQDNLESEVSKLPGMGGKI 274
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIG---------------------- 304
+QE + G +S+++ ++ +T+S F ++GIG
Sbjct: 275 FSKVQEFLEKGSISEVQETLASDRYQTLSTFATIYGIGPGKAQHFYDMGMRTISDLERYY 334
Query: 305 ---PATAQKLY-----------EKGHRTLDDLKNEDSLTHSQR----------------- 333
P +A++ Y E+ R ++D + + T + +
Sbjct: 335 DIDPPSAEEGYSATSVESMQAVERLLREMEDWGYDVTFTPNGKRVPSKTSKRGNKPPDLT 394
Query: 334 --LGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVI 391
+ L + IPR EVE+M ++ + +E+ P + G YRRGK D+D+V
Sbjct: 395 VPVALALRGEFDLPIPREEVEEMRDVVMRELDELQPGCVSTIVGGYRRGKPQSNDVDIVF 454
Query: 392 MHPDRKSH----KGFLSKYVKKLKEMKFL------------------------------- 416
H D ++ KG ++ + +
Sbjct: 455 SHTDWENGAEIIKGLCTRLTAHMHRKGLITHVMHLSGFHAHDALKTDHWDSLEKSLCVFR 514
Query: 417 -------------REDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYR 462
R DLIF+ Y +I WTG+ + R LRL A + +G +
Sbjct: 515 LPETPTSGPRLHRRLDLIFAAPQS-------YWTAVIGWTGSKMFQRDLRLWAKQERGMK 567
Query: 463 LDDTGLFPATYGSGGKQGVRARTSLKF-DTEKEVFDFLGFPWLEPHERN 510
D GL R T L +EKEVF LG W++P RN
Sbjct: 568 FDSNGL-----------TRRHDTRLYLPKSEKEVFSILGLDWIDPTMRN 605
>gi|410697475|gb|AFV76543.1| DNA polymerase IV (family X) [Thermus oshimai JL-2]
Length = 575
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 103/338 (30%), Positives = 151/338 (44%), Gaps = 62/338 (18%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESADQVKG------LPGI 262
N+ + ++F ++ + LG++ R +Y +A + L IE+ Q KG LPGI
Sbjct: 3 NEELAQVFEEIALMSEFLGDNPFRVRAYLEAARTLRDLDIPIETVAQ-KGKEALLELPGI 61
Query: 263 GKSMQDHIQEIVTTGKLSKLEHFEKDEKV-RTISLFGEVWGIGPATAQKLYEK-GHRTLD 320
G + + I E + TG++ K H E +V R + V G+GP TA++LYE G +L+
Sbjct: 62 GPDLAEKILEFLATGRVKK--HQELLAQVPRGVLAVMAVPGVGPKTARQLYEALGIDSLE 119
Query: 321 DLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAG----------------EE 364
LK ++L L LK F K R ++ LLQ G EE
Sbjct: 120 GLK--EALERGDLLKLKGFGPKKAERIREGLD----LLQATGRRRPLGAVLSFARNFLEE 173
Query: 365 V--LPEV--IILCGGSYRRGKASCGDLDVVIMHPDRKS-------HKGFLSKYVK-KLKE 412
+ LP V LCG S RR K + GDLD + P + KG Y K + +
Sbjct: 174 IRALPGVEKAELCG-SARRYKETVGDLDYLAASPTPERVVEGFVRLKGVARVYAKGEERA 232
Query: 413 MKFLREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPAT 472
FL++ L V P + + GL TG+ + RLR LA+ KG +L + G+F
Sbjct: 233 TVFLKDGLQVDLR---VVPPESFGSGLQYLTGSKDHSIRLRALAQEKGLKLSEYGVF--- 286
Query: 473 YGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
R L TE+EV+ LG PW+ P R
Sbjct: 287 ---------RGEERLAGATEEEVYAALGLPWIPPPLRE 315
>gi|221632593|ref|YP_002521814.1| PHP domain-containing protein [Thermomicrobium roseum DSM 5159]
gi|221156427|gb|ACM05554.1| PHP domain protein [Thermomicrobium roseum DSM 5159]
Length = 581
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 126/274 (45%), Gaps = 39/274 (14%)
Query: 259 LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHR 317
+PG+GK++ I+E + TG+L E +++ ++ + L EV GIGPA A LYE+ G
Sbjct: 57 IPGVGKAIAAKIEEYLRTGRLEYYEQLKREVPLQAVDLL-EVPGIGPARAHLLYEQLGIT 115
Query: 318 TLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQME---RLLQKAGEEVLPEVI---- 370
T+ DL + + H R + + ++ RI R M+ RLL V EV+
Sbjct: 116 TIQDLL-QAAQEHKLRKLPGFGEKLEERIAREAARLMQRSKRLLLGIALPVAEEVVAALR 174
Query: 371 -------ILCGGSYRRGKASCGDLDVVIMHPDRKS------HKGFLSKY--VKKLKEMKF 415
I GS RR K + GD+D+++ D + H F+ + V +
Sbjct: 175 PHAAIRAIDPAGSLRRMKETIGDIDILVASDDPPAVVDAFVHLPFVKEVLAVGPTRPSIL 234
Query: 416 LREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS 475
REDL V P + Y L+ +TG+ N LR + +G++L + GLF T
Sbjct: 235 TREDLQVDLRV--VRPHE-YGSALLYFTGSKEHNIALRSFVQERGWKLSEYGLFDET--- 288
Query: 476 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
GK L +TE E++ LG W+ P R
Sbjct: 289 -GKL-------LASETEHEIYALLGMDWIPPELR 314
>gi|72138850|ref|XP_796033.1| PREDICTED: DNA-directed DNA/RNA polymerase mu-like
[Strongylocentrotus purpuratus]
Length = 573
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 100/189 (52%), Gaps = 4/189 (2%)
Query: 232 RSFSYYKAIPVIEKLPFKIESADQVKGLPGI--GKSMQDHIQEIVTTGKLSKLEHFEKDE 289
R+ ++ KA ++ LP +I+ + V+ L I G + I +I+ G +++E ++ +
Sbjct: 188 RALAFRKASAALKALPEEIKKPEDVENLYDIRGGAHCKGVILDILENGYSAEVEGIKRSD 247
Query: 290 KVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDIKTRIP 347
+ +SLF ++G G +T+ K + G R+LDD+K +LT SQ G++Y++D+ T +
Sbjct: 248 WYQNMSLFTGIYGCGISTSAKWCQMGLRSLDDVKGSYILNLTRSQLKGIEYYNDLNTPVT 307
Query: 348 RHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYV 407
+ E + + + + + P ++ G + RGK D+D +I HP+ KG L +
Sbjct: 308 KEEAKWIHDAVSQEVAAIQPGSTVVMTGGFLRGKDMGHDVDFLISHPEEGKEKGILGTLL 367
Query: 408 KKLKEMKFL 416
+ L + L
Sbjct: 368 QALTKKGLL 376
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
Query: 429 VYPRDIYAFGLIAWTGNDVLNRRLR-LLAESKGYRLDDTGLFPATYGSGGKQGVRARTSL 487
+ P YAF L+ WTG+ + NR +R + L GLF T SL
Sbjct: 500 IAPAGQYAFALLGWTGSKMFNRSMRDYTNKVMNMNLSSHGLFDKTNN----------CSL 549
Query: 488 KFDTEKEVFDFLGFPWLEPHERNL 511
+ TE+E+F+ L + P ERN
Sbjct: 550 QAKTEEEIFELLKLDYKPPEERNC 573
>gi|410721408|ref|ZP_11360745.1| DNA polymerase IV (family X) [Methanobacterium sp. Maddingley
MBC34]
gi|410598990|gb|EKQ53550.1| DNA polymerase IV (family X) [Methanobacterium sp. Maddingley
MBC34]
Length = 566
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 145/338 (42%), Gaps = 67/338 (19%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKI---ESADQVKGLPGIGKSM 266
N + I ++ + G D R+ +Y +A +E L I + +++ LPGIGK +
Sbjct: 3 NHKVASILHRVADYLEMDGVDFRTKAYRRAAHTVETLSIDIADIQKQGKLEELPGIGKHI 62
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNE 325
I+EI+ TG L LE+ K+E + V G+GP + LY E G + LDDL+ E
Sbjct: 63 HGKIEEILDTGSLEYLENL-KEEFPLDLDALMSVEGLGPKKIKLLYHELGIKNLDDLERE 121
Query: 326 DSLTHSQRL-GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILC----------- 373
H +RL G+ + K + +E + G ++L +V+ L
Sbjct: 122 AKRHHIRRLKGMGAKTEAKI------LHNLEFARKGIGRQLLGDVLPLASEIKERISALD 175
Query: 374 -------GGSYRRGKASCGDLDV--VIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFST 424
GS RR K + GD+D+ V HPD + Y ++ L +D+I
Sbjct: 176 VVDQAEIAGSIRRRKETVGDIDILTVTKHPDE------VMNYFTQMD----LVDDIIVRG 225
Query: 425 HSE-------------EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPA 471
HS+ V+ + ++ +TG+ LN LR +A SK +L++ G+F
Sbjct: 226 HSKSTVRLYNGMDADIRVFKEADFGSAMVYFTGSRELNIHLRKIAISKSMKLNEYGVFRG 285
Query: 472 TYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
GK+ E +VF LG ++ P R
Sbjct: 286 DERLAGKR------------ESDVFRVLGLDYIPPELR 311
>gi|224373470|ref|YP_002607842.1| DNA polymerase X family/PHP domain protein [Nautilia profundicola
AmH]
gi|223589333|gb|ACM93069.1| DNA polymerase X family/PHP domain protein [Nautilia profundicola
AmH]
Length = 546
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 90/330 (27%), Positives = 148/330 (44%), Gaps = 49/330 (14%)
Query: 210 NKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEK----LPFKIESADQVKGLPGIGK 264
NK I +I K ++ GE+ + +Y A ++E ++ + LPGIG
Sbjct: 4 NKQIADILSKTADLMEIKGENPFKVRAYRNAARILENSAKDFSKLVKEGFDLTKLPGIGH 63
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 323
+ ++I+EIV TGK KLE +K+ + L + G+GP ++LYE G + +DDLK
Sbjct: 64 DLSEYIKEIVNTGKFHKLEELQKEIPKGVVELLS-IEGLGPKRVKQLYETFGIKNMDDLK 122
Query: 324 NEDSLTHSQRL-------------GLKYFDDIKTRIPRHEVEQM-----ERLLQKAGEEV 365
+L G+K R EVE + LL+ G E
Sbjct: 123 KYAYSGELDKLPGFGPKLIEKILKGVKQLKKAGIRFLWAEVEDTANELKDYLLEFEGVET 182
Query: 366 LPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEM--KFLREDLIFS 423
+ GS+RR K S GDLD++++ D + K+ K+KE+ K L +F
Sbjct: 183 VD-----IAGSFRRKKESVGDLDILVIAKDYPKVSEYFIKF-HKVKEVYSKGLTRSTVFL 236
Query: 424 THSEEVYPRDI----YAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQ 479
+ +V R + Y L +TG+ N +R LA KG ++++ G++ +
Sbjct: 237 DNDLQVDLRAVAKESYGAALHYFTGSKSHNIEIRKLAIQKGLKINEYGVY---------K 287
Query: 480 GVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
G SL TE++V+ +G ++EP R
Sbjct: 288 GNERIASL---TEEDVYKSVGLEYVEPELR 314
>gi|170097211|ref|XP_001879825.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645228|gb|EDR09476.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 811
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 111/214 (51%), Gaps = 33/214 (15%)
Query: 191 DFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRA-LG-EDR-RSFSYYKAIPVIEKLP 247
+FS D ++Y P K +TE L+ ++ A +G EDR R+FSY K+I + P
Sbjct: 604 NFSEGDEKDEKVVYGGP-APKRLTE----LMELHEAKMGDEDRWRAFSYNKSIRALRNYP 658
Query: 248 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307
++ S + + + G+G+ I+EI+ TG+L ++ +E+ ++V++ LF ++G+G +T
Sbjct: 659 KRLNSYAEARNIRGVGERTARKIEEILETGELRRI-RYERTDEVKSTRLFQGIYGVGRST 717
Query: 308 AQKLYEKGHRTLDDL---KNEDSLTHSQRLGLKYFD----------------DIKTRIPR 348
A K Y G RTLDD+ K SL+ +Q +G++++D DI R+PR
Sbjct: 718 AFKWYAAGCRTLDDISAGKFGVSLSRAQEIGIRFYDGANANFTPHTTLILQTDINDRMPR 777
Query: 349 HEVEQMERLLQKAG-----EEVLPEVIILCGGSY 377
E + + L++ G V +LC Y
Sbjct: 778 IEAKAIFDLIKPIGFNLFMSSVFQRASLLCSTLY 811
>gi|148654262|ref|YP_001274467.1| phosphotransferase domain-containing protein [Roseiflexus sp. RS-1]
gi|148566372|gb|ABQ88517.1| PHP C-terminal domain protein [Roseiflexus sp. RS-1]
Length = 580
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/326 (25%), Positives = 141/326 (43%), Gaps = 40/326 (12%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIES---ADQVKGLPGIGKS 265
N + E+F + ++ L EDR R +Y +A I LP + + +++ +PG+GK+
Sbjct: 7 NHEVAEMFSAIADLMEILDEDRFRVQAYRRASDAIRDLPAPLATYRDRGELEAIPGVGKA 66
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKN 324
+ I E++ TG+L ++ L V G+GP TA +LY E G +L +LK
Sbjct: 67 IAGKISELLDTGELQYYNRLQEKAPPGVRELL-RVPGVGPRTAGRLYRELGITSLAELKR 125
Query: 325 ---EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILC-------- 373
E L + G K + I I E ++ LL A E E +IL
Sbjct: 126 AAEEGRLATLKGFGAKMIEGILQGISVAERQERRMLLAHALETA--EELILALRTAAPTL 183
Query: 374 -----GGSYRRGKASCGDLDVVIMHPDRKS-HKGFLS-KYVKKLKEMKFLREDLIFSTHS 426
GS RRG+ + GDLD+++ D + + F + V +++ + ++ +
Sbjct: 184 RQATYAGSLRRGRPTVGDLDILVAADDAPAVVRAFTTLPLVARVESAGDEKASILLHNGT 243
Query: 427 EE---VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRA 483
+ P ++ L +TG+ N R R LA ++G + G A
Sbjct: 244 QADLIAVPPALWGSALQHFTGSKAHNIRFRELALARGSSFSEHGFRRADG---------- 293
Query: 484 RTSLKFDTEKEVFDFLGFPWLEPHER 509
T L TE+EV+ + PW+ P R
Sbjct: 294 -TVLTCATEEEVYAAVDLPWIPPELR 318
>gi|296812843|ref|XP_002846759.1| high-affinity nickel transport protein [Arthroderma otae CBS
113480]
gi|238842015|gb|EEQ31677.1| high-affinity nickel transport protein [Arthroderma otae CBS
113480]
Length = 685
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 94/201 (46%), Gaps = 14/201 (6%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEI--VTTGKLSKLEHFEKDEKVR 292
+Y +I + P K++ ++V LPG + + E G L D +
Sbjct: 279 AYSTSIASLAAYPHKLKLPEEVVSLPGCENRIANLFAEWKHSKNGTLDSATPLTTDPALS 338
Query: 293 TISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRH 349
I F +WG+G +A++ Y ++ R LDD+ + D+L+ Q++G+KY+D+ IPR
Sbjct: 339 VIHSFYNIWGVGAKSAREFYYQRQWRDLDDIVEQGWDTLSRVQQIGVKYYDEFLAGIPRE 398
Query: 350 EVEQMERLLQKAGEEVLPEV--------IILCGGSYRRGKASCGDLDVVIMHPDRKSHKG 401
E + + + + V P+ I+ GG YRRGK GD+DV++ H D +
Sbjct: 399 ETASIAATIWRHAKRVRPDADFDGEGVEYIIVGG-YRRGKEVSGDVDVILTHRDERVTSN 457
Query: 402 FLSKYVKKLKEMKFLREDLIF 422
+ V L++ ++ L
Sbjct: 458 LVFDVVASLEQEGWITHTLAL 478
>gi|71004160|ref|XP_756746.1| hypothetical protein UM00599.1 [Ustilago maydis 521]
gi|46096015|gb|EAK81248.1| hypothetical protein UM00599.1 [Ustilago maydis 521]
Length = 616
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 118/525 (22%), Positives = 202/525 (38%), Gaps = 116/525 (22%)
Query: 71 QQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGN 130
+Q+ ++ L ++ V+ QWL+ V DL+ + I D ++ +
Sbjct: 122 RQLGEEVLRDWRRFVVTPQWLDAVKAEARLVDPDLFAVV------AIKDES-KTLESKPS 174
Query: 131 TSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASP 190
+SD + H H A + LS +P +S S + + + P
Sbjct: 175 ATSDRKRKHSPSGSPLLAPSHH--ASPPAVLRRKHLSSSPTPTTASSSYYDAIYPPAPCP 232
Query: 191 DF--SSHHITDPSLLYNPPDLNKN-ITEIFGKLINIYRALGEDRRS-FSYYKAIPVIEKL 246
+ + + PS L++P N+ ITE+ +LI R L D S +Y +AI ++
Sbjct: 233 RWQNTRYACRRPSPLHSP---NQALITEL--ELIRTERRLTGDTYSEMAYMRAISALKAF 287
Query: 247 PFKIES-----------------ADQVKGLPGIGKSMQDHIQEIVTTG-----KLSKLEH 284
PF I +V+ L G+GK + I++ + ++ + +
Sbjct: 288 PFPIPDRILDPPEVFDPALLELRLSEVEKLKGVGKKVFSLIKQFYASENKSGERIVEAKV 347
Query: 285 FEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL--KNEDSLTH-SQRLGLKYFDD 341
+D V ++ F E++GIGP A++ Y G R+ D+ + + TH S + ++ D
Sbjct: 348 IARDPAVYIMNAFTELYGIGPIGAREAYNSGARSFSDVLHRGKSLATHLSVQESVRILAD 407
Query: 342 IKTRIPRHEVEQMERLLQKAGEEVLPEVI----ILCGGSYRRGKASCGDLDVVIMH---P 394
++ I R E + + +L + + +CGG YRRGK S D+D++I H P
Sbjct: 408 LRKPIGREECRSITAHIMALVRSMLADDVEVKYEICGG-YRRGKESTYDVDIIIGHSEPP 466
Query: 395 DRKSH---------KGFLSKYVK-----------------------------------KL 410
R H KG ++ V L
Sbjct: 467 SRALHMRLLNEMKRKGLITHLVNVSTPASSYLDPDTTIHDKHTPPPVHIDIANIVVLPPL 526
Query: 411 KEMKFL----REDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDT 466
+ L R DL+F P +Y ++ WTG+ R LRL A+SKG+
Sbjct: 527 SDRTHLAMHRRVDLVFC-------PLRVYGATVLGWTGSMTFERDLRLWAKSKGFNFSFD 579
Query: 467 GLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 511
GL + + + EK VFD L ++ P RN
Sbjct: 580 GL----------TNLADESLVDTTDEKAVFDALDLQYMPPEWRNC 614
>gi|389739400|gb|EIM80593.1| Nucleotidyltransferase [Stereum hirsutum FP-91666 SS1]
Length = 631
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 94/227 (41%), Gaps = 64/227 (28%)
Query: 334 LGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMH 393
LGL+ +D+ +IPR EV ++ R++ +E+ P + G YRRGK D+DVV H
Sbjct: 416 LGLR--EDLSVKIPRDEVREIHRVIMGELDELQPGCVSTIVGGYRRGKEESNDVDVVFTH 473
Query: 394 PDRKSHKGFLSKYVKKLKE----------MKFLREDLIFSTH---------------SEE 428
PD + KG + + L + F + + +TH +
Sbjct: 474 PDPEKAKGLCKRLMHVLYDKGLVTHVMHLSSFHAHNALRTTHWDSLEKSLTVFVLPGTSP 533
Query: 429 VYP-----------------------RDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDD 465
+YP Y ++ WTG+ + R LR A+ +G + D
Sbjct: 534 IYPLPSDHDPSKTRRRRRRVDFIFAQPKTYWTAVVGWTGSMMFERDLRSWAKKRGLKFDS 593
Query: 466 TGLFPATYGSGGKQGVRARTS--LKFDTEKEVFDFLGFPWLEPHERN 510
+G+ R R S + TEKEVFD LG PW++P RN
Sbjct: 594 SGI------------TRRRDSKLIYPRTEKEVFDVLGLPWIDPTMRN 628
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 56/97 (57%), Gaps = 2/97 (2%)
Query: 228 GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEK 287
GE+R + SY KA+ V P KI S ++ LP +G + I++ + G +S++
Sbjct: 204 GEERSALSYRKAVSV--AYPTKINSTRDIQRLPFVGSKISSMIEQFIDQGYISEVRTTLH 261
Query: 288 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN 324
+ +T+++F ++GIGP TA++LY G +L+ L+
Sbjct: 262 SARFKTLTVFNSIYGIGPHTARQLYALGLSSLEQLEQ 298
>gi|159484785|ref|XP_001700433.1| pol lambda-related class X DNA repair polymerase [Chlamydomonas
reinhardtii]
gi|158272320|gb|EDO98122.1| pol lambda-related class X DNA repair polymerase [Chlamydomonas
reinhardtii]
Length = 1599
Score = 82.8 bits (203), Expect = 4e-13, Method: Composition-based stats.
Identities = 57/166 (34%), Positives = 86/166 (51%), Gaps = 13/166 (7%)
Query: 238 KAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLF 297
+A+ V +L ++S DQV+ L G+G ++EI+ TG+L + +E E T+ LF
Sbjct: 1115 RALAVCARLTQPLQSPDQVQRL-GLGAKTAKKLEEILATGRLQRNAVWEGSELRATMKLF 1173
Query: 298 GEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERL 357
+VWG +TA+K Y G R+L D+ LT QRLGL +F D R+ R EV +
Sbjct: 1174 TQVWGCAESTARKWYVGGARSLSDVAARSDLTAQQRLGLTHFHDFSRRLARAEVAEAAAG 1233
Query: 358 LQKAGEEVLPEVIILCG------------GSYRRGKASCGDLDVVI 391
+++ EVL ++ L GSY RG S D+D +I
Sbjct: 1234 VRRVTLEVLQDLTGLPQHVVADRLHVRPMGSYARGAPSSSDVDFII 1279
>gi|170097213|ref|XP_001879826.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645229|gb|EDR09477.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 168
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 76/164 (46%), Gaps = 29/164 (17%)
Query: 375 GSYRRGKASCGDLDVVIMHP--DRKSHKGFLSKYVKKLKEMKFLREDLIFSTHS---EEV 429
GSYRRGK CGD+DV++ D K+H G L + +K L+ + EDL S E
Sbjct: 2 GSYRRGKMDCGDIDVLLTRSTKDGKTHAGILPRLLKALRGAGIIVEDLALPEDSDGLEAT 61
Query: 430 Y----------------------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTG 467
Y P L+ +TG+D+ NR +RL A + GY L+ G
Sbjct: 62 YRGLCCLPDVKGSKYRRIDFLTVPWQSRGAALLYYTGDDIFNRAMRLKANALGYSLNQRG 121
Query: 468 LFPATYGSGGKQGVRARTS--LKFDTEKEVFDFLGFPWLEPHER 509
LF + ++ + +TE+E+FD LG PW EP ER
Sbjct: 122 LFGNVIRDPHDRRIKMNAGKLVASETEEEIFDILGVPWQEPLER 165
>gi|356501983|ref|XP_003519802.1| PREDICTED: uncharacterized protein LOC100785228 [Glycine max]
Length = 142
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/57 (66%), Positives = 43/57 (75%)
Query: 452 LRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHE 508
L+ AESKG+R DDT LFP+T SGGK G + SLKF TEKE+FDFL PWLEPHE
Sbjct: 75 LKQQAESKGFRFDDTRLFPSTQPSGGKWGAKGSASLKFYTEKEIFDFLDLPWLEPHE 131
>gi|392580109|gb|EIW73236.1| hypothetical protein TREMEDRAFT_25387, partial [Tremella
mesenterica DSM 1558]
Length = 258
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 109/239 (45%), Gaps = 42/239 (17%)
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-- 327
I +I+ G + +LE E E++R F V IG A+ + G RT +DL N
Sbjct: 10 IHDILKYGLVPQLE--ELTEEMRATVAFNRVHAIGNIYAKTFAKNGARTFEDLINSTGDE 67
Query: 328 ----LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKAS 383
++ +Q+L LKY +++ IPR EV++ + L++ A + P + GSYRRG+ +
Sbjct: 68 YGKKVSKAQKLALKYHHEMEIMIPRQEVDKFDMLIKDALNKADPTIKYEIMGSYRRGEET 127
Query: 384 CGDLDVVIMH-------PDRKSHKG------FLSKYVKKLKEMKFLREDLIFSTHSEEVY 430
D+D+V+ H PD K KG + + + + D +F+T ++V+
Sbjct: 128 SSDIDMVVWHDSLKRRDPDAKVRKGNPAPDSIMGRVLNAMFSAGLFSSDKMFATGEKKVW 187
Query: 431 ---------------------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGL 468
P + + L+ TG++ L R LR AE K L++ G+
Sbjct: 188 GLSRLPGDPKALHRQVDVRLCPTESLPYMLLGNTGDNDLMRFLRYKAEEKDLLLNEYGM 246
>gi|375145599|ref|YP_005008040.1| PHP domain-containing protein [Niastella koreensis GR20-10]
gi|361059645|gb|AEV98636.1| PHP domain protein [Niastella koreensis GR20-10]
Length = 596
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 87/334 (26%), Positives = 150/334 (44%), Gaps = 51/334 (15%)
Query: 210 NKNITEIFGKLINIYRALGEDRR--SFSYYKAIPVIEKLPFKIE----SADQVKGLPGIG 263
N + IF ++ + YR LG R +Y A I L I D + L GIG
Sbjct: 14 NPELAAIFHQMASCYRYLGAKHRFRVMAYDSANRTINNLKNDISEYAGKNDGLHELKGIG 73
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 323
+S+ + I E + TGK++ + +K + + L ++ G+GPAT + L+ + H +
Sbjct: 74 ESIGEKIIEYLHTGKINTFDQLKKKVPLGLLELM-DINGLGPATVKTLHRRLH-----IN 127
Query: 324 NEDSLTHSQRLG----LKYF-----DDIKTRIPRHEVEQMERLL---QKAGEEVLPEVII 371
N++ L + G LK F ++IK + + LL Q+ GE++L +V+
Sbjct: 128 NKEELIAAIEAGKLENLKGFASKKVENIKRGLKLFKQAHSRMLLWDAQRTGEDILQQVLQ 187
Query: 372 LCG-------GSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFL-----RED 419
L G GS RR K + GD+D+V D+K K ++++ + + L R
Sbjct: 188 LPGIKKAALAGSLRRKKETIGDIDIVAT-ADKKDWKKIVTRFASLPQTDRVLAKGDTRAA 246
Query: 420 LIFSTHSEEVYPRDI----YAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS 475
++ +V R + Y L+ +TG+ N LR LA ++GY+L++ G+F A
Sbjct: 247 IVLKGSGTQVDLRLVQAHEYGAALLYFTGSKEHNIALRALARAQGYKLNEYGVFDAV--- 303
Query: 476 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
L TE+E++ ++ P R
Sbjct: 304 -------TDRKLPGTTEEEIYRLFDLQFIPPELR 330
>gi|432885097|ref|XP_004074656.1| PREDICTED: DNA-directed DNA/RNA polymerase mu-like [Oryzias
latipes]
Length = 358
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 84/152 (55%), Gaps = 1/152 (0%)
Query: 229 EDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKD 288
E+ R ++ +A +++ LP + SA Q++GLP +G+ I+EI+ TG +++E +
Sbjct: 207 EEGRGVAFRRAAALLKTLPSAVMSASQLRGLPCLGEHSLRVIKEILETGTSTEVESTKGS 266
Query: 289 EKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-LTHSQRLGLKYFDDIKTRIP 347
E+ + + + ++G+G TA + +G L L+ L +QR GL+++ DI +
Sbjct: 267 ERFKALKVLTGIFGVGAKTADRWIREGIHDLHQLRASGQVLNRAQRAGLQHYADINQPVT 326
Query: 348 RHEVEQMERLLQKAGEEVLPEVIILCGGSYRR 379
R E + +E +++KA VL I+ G +RR
Sbjct: 327 RAEADAIEAIVEKAVSSVLRGAQIVLTGGFRR 358
>gi|219850796|ref|YP_002465228.1| PHP domain-containing protein [Methanosphaerula palustris E1-9c]
gi|219545055|gb|ACL15505.1| PHP domain protein [Methanosphaerula palustris E1-9c]
Length = 562
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 88/305 (28%), Positives = 142/305 (46%), Gaps = 43/305 (14%)
Query: 228 GEDR-RSFSYYKAIPVIEKL--PFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEH 284
GED R ++ +A IE L P + +QV +PGIG I+E+ + S L+
Sbjct: 23 GEDPFRVRAFQRAAMAIEGLGEPVCSMAPEQVLAVPGIGPHTAAQIRELCAGEESSLLQD 82
Query: 285 FEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNEDSLTHS----QRLGLKYF 339
++ I+L E+ +GP T +L+ E G T++DL+ +L H + G K
Sbjct: 83 LQQSIPASVIALL-ELDQVGPKTVHRLWHELGISTIEDLEKA-ALAHQVSTLKGFGAKKE 140
Query: 340 DDIKTRIPRHEVEQMERLLQKAGEEVLPEVIIL-------CGGSYRRGKASCGDLDVVIM 392
+++ I RH R+ + A E VL EV L GSYRRG+A+ GD+D+V
Sbjct: 141 EELVKAIARHR-RSTGRMTRVAAEAVLREVTALLVEGTYTIAGSYRRGRATIGDIDIVST 199
Query: 393 HPDRKSHKGFLS------KYVKKLKEMKFL--REDLIFSTHSEEVYPRDIYAFGLIAWTG 444
+ + +S +K ++ + R D+ F T ++ P +Y TG
Sbjct: 200 EAPAEVNSRLVSLADEVIDQGEKRTSIRVMGQRVDVRFCT-PDQCGPMLLY------LTG 252
Query: 445 NDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWL 504
+ N +LR +A S G+RL++ G+ T G+ RT+ TE+E+F LG +
Sbjct: 253 SKDFNIKLREIALSAGWRLNEYGVEERTTGA-------HRTAA---TEEEIFSMLGMDPV 302
Query: 505 EPHER 509
P R
Sbjct: 303 PPELR 307
>gi|50303085|ref|XP_451480.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640611|emb|CAH03068.1| KLLA0A11033p [Kluyveromyces lactis]
Length = 506
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 121/260 (46%), Gaps = 12/260 (4%)
Query: 161 VETNALSEAPNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKL 220
VET+ S+ N+ + + S + D + H +D +L+ + N + ++ L
Sbjct: 100 VETD--SQESNTGVPDTHQVTSPSETHDTADTNVSHSSDANLIMPMNNPNYKLIKVLKSL 157
Query: 221 INIYRALGEDRRSFSYYKAIPVIEKLPFKIESA-DQVKGLPGIGKSMQDHIQEIVTTGKL 279
Y+ + R Y K I +++ + KIES D ++ G+ K + I ++ G+
Sbjct: 158 EKRYKLQNDTFRYLGYMKMIKILQNVRVKIESEEDAIEN--GLSKGLSKKIPFLLKLGES 215
Query: 280 SKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYF 339
+ D +T+ F E GIG +++ G+ T +DL + +Q GL ++
Sbjct: 216 G--SELKMDTSEQTLLYFQECHGIGAFKSKQYVNMGYSTFEDLI--PYMNWTQLTGLAFY 271
Query: 340 DDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSH 399
+D + IPR E + E +++KA EV + + GSYRRG+ GD+D+V+ P +
Sbjct: 272 EDWQLSIPREETMKHEAIIRKAMNEVNENLCMEITGSYRRGQPRSGDIDIVVHMPGQNDL 331
Query: 400 KGF---LSKYVKKLKEMKFL 416
L K + KL E ++
Sbjct: 332 NYISRELEKVIIKLTETGYI 351
Score = 39.7 bits (91), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 12/72 (16%)
Query: 440 IAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFL 499
+ +TGN+ N++ R +A+ KGY L + G++ K G + E E+ D +
Sbjct: 447 VYFTGNNNFNKKCRTIAKQKGYVLSNDGIY--------KDGQLIPVA----DEYEILDMI 494
Query: 500 GFPWLEPHERNL 511
G L+P ERNL
Sbjct: 495 GVDKLKPTERNL 506
>gi|366988055|ref|XP_003673794.1| hypothetical protein NCAS_0A08550 [Naumovozyma castellii CBS 4309]
gi|342299657|emb|CCC67413.1| hypothetical protein NCAS_0A08550 [Naumovozyma castellii CBS 4309]
Length = 576
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 134/300 (44%), Gaps = 36/300 (12%)
Query: 148 EDVEHFQAESKGDVETNALSEAPN-SPMSSESLTNTLSTASASPDFSSHHITDPSLLYNP 206
E+V +AE++G++E + + N + M E HI +P + +
Sbjct: 140 ENVPDSEAETEGNIELESFEDVENRNSMQYE------------------HINEPLIESSY 181
Query: 207 PDLNKNITEIFGKLINI----YRALGEDRRSFSYYKAIPVIEKLPFKIESADQV-KGLPG 261
+L KN ++ K +N+ YR G+ R+ SY A IEK P+KIES Q + L
Sbjct: 182 INLGKN--DVLIKALNLLAKKYRLKGDQFRARSYTLAKASIEKCPYKIESGAQAQRELTN 239
Query: 262 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDD 321
IG S+ I I+ TG L LE E R + F +G A++ + D
Sbjct: 240 IGLSIAKKIDIILKTGILPGLEEVNLVE--RKLDYFTNCHAVGSYKAKRWELFKLSSFSD 297
Query: 322 LKN---EDSLTHSQRL-GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSY 377
+ +D +T L G Y++D RI R E E ++++ + + P + GSY
Sbjct: 298 VVTRFPDDFITDWTMLFGWSYYEDWSKRISREECECHLKIVKDTLKTIDPSCHVELQGSY 357
Query: 378 RRGKASCGDLDVVIMHP---DRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEVYPRDI 434
RG +CGD+D++ D K K V+ L F++ L+ ++ +E + +DI
Sbjct: 358 VRGSETCGDIDLLFYKQYCDDTKEIGIIFEKLVRLLFRKGFIQCSLMLTSKLQETF-KDI 416
>gi|405120890|gb|AFR95660.1| hypothetical protein CNAG_02160 [Cryptococcus neoformans var.
grubii H99]
Length = 398
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 122/277 (44%), Gaps = 51/277 (18%)
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL------- 322
IQ ++ G + +LE D+ + + F +V G G A++ E+G R+LDDL
Sbjct: 130 IQNLIEDGVIPELEDL--DDSWKAMIEFHKVQGFGRVKARQYVEEGARSLDDLLSAREGN 187
Query: 323 KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA 382
+ L+ L ++Y + + T IPR EVE+ ++L+++A P++ GSYRRG++
Sbjct: 188 AQKYKLSEPLTLAVRYHNQMSTMIPRSEVEEFDKLIKQALHLADPKISYQILGSYRRGES 247
Query: 383 SCGDLDVVIMH---PDRKSHK---------GFLSKYVKKLKEMKFLREDLIFSTHSEE-- 428
++DVV+ H P ++ + K + + + L +D IFS+ ++
Sbjct: 248 ISAEIDVVVWHESFPRWNKNEPRVRKILSISLMGKIMDQFHRSRLLDQDKIFSSGLKQFS 307
Query: 429 -------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGL- 468
+ P + F L+ TG+D L LR A GY L++ +
Sbjct: 308 ALTTLPTKADAIHRRLNLRICPLESLPFFLLMNTGDDRLITILRKKAGDMGYNLNELAMG 367
Query: 469 FPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLE 505
P G T K E E+F L P+LE
Sbjct: 368 LPVDDKDG--------TEFKVKDEAEIFAKLKLPYLE 396
>gi|206895366|ref|YP_002246803.1| DNA polymerase beta family [Coprothermobacter proteolyticus DSM
5265]
gi|206737983|gb|ACI17061.1| DNA polymerase beta family [Coprothermobacter proteolyticus DSM
5265]
Length = 571
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 89/330 (26%), Positives = 149/330 (45%), Gaps = 49/330 (14%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESA---DQVKGLPGIGKS 265
N+ + + ++ I G+ R +Y +A +E L IE ++ +PGIG+S
Sbjct: 3 NQEVANLLRQIAKILEIKGDSTFRIRAYEEAATRVENLAEPIEDIWKRGELTNVPGIGES 62
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKN 324
+ I+E + TGK S LE KD + EV GIGP A +LY E G +++++L
Sbjct: 63 IAAKIEEYLKTGKSSYLEEISKDIPKGLFEMM-EVPGIGPRLAWRLYTEAGIQSIEEL-- 119
Query: 325 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGE-------EVLPEVI------- 370
E +L + GL+ F ++ + ++ ++ Q +G ++ VI
Sbjct: 120 ERALVEHKLQGLRGFG---AKMEKKLLDGIQMYRQLSGRIPLYLALPIVHNVITYLKGHA 176
Query: 371 ----ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLRED----LIF 422
I GS RRG+A GD DV++ D + +VK + L + +F
Sbjct: 177 KFVDIAPAGSLRRGRADIGDCDVLVATDDPIP---VMEAFVKMPGVAQVLAKGDTKASVF 233
Query: 423 STHSE---EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQ 479
+ + P + + L +TG+ N +LR LA KGY+L++ GLF +
Sbjct: 234 TGGLQVDLRAVPVESWGAALQYFTGSKAHNIKLRELAIKKGYKLNEYGLFKMDT----DE 289
Query: 480 GVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
V R TE+E+++ LG PW+ P R
Sbjct: 290 KVAGR------TEEEIYNALGLPWIPPTMR 313
>gi|410730677|ref|XP_003980159.1| hypothetical protein NDAI_0G05000 [Naumovozyma dairenensis CBS 421]
gi|401780336|emb|CCK73483.1| hypothetical protein NDAI_0G05000 [Naumovozyma dairenensis CBS 421]
Length = 570
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 104/221 (47%), Gaps = 10/221 (4%)
Query: 218 GKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKG-LPGIGKSMQDHIQEIVTT 276
G L Y+ G+ R+ Y A IE+ PFKIES Q + L IG S+ IQ I+
Sbjct: 196 GTLAKKYKLKGDQFRARGYRLARASIEECPFKIESGAQAQQQLANIGPSIAKKIQLILNV 255
Query: 277 GKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL--KNEDSLTHSQ-- 332
G L LE E T+ F G+G TA++ + +L D+ K D LT
Sbjct: 256 GSLPGLEETVNLET--TLDYFSNCHGVGAYTAKRWHLFKLNSLTDVVKKFPDELTKDWPI 313
Query: 333 RLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIM 392
LG Y++D RI R E E+ ++++ ++ + GSY RG +CGD+D++
Sbjct: 314 LLGWSYYEDWSKRIRRKECEEHLAIVKRKLAKIDSNFQVELQGSYARGAETCGDIDLMFY 373
Query: 393 HP--DRKSHKGF-LSKYVKKLKEMKFLREDLIFSTHSEEVY 430
P D G+ L + +L E KF+ L + E+++
Sbjct: 374 KPGCDDTREIGYTLERLALELYEDKFVECFLQLTPTLEKIF 414
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 11/70 (15%)
Query: 440 IAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFL 499
+ W G+ NR LR+LA KG++L GLF +G + FD EK +F L
Sbjct: 502 MQWIGSAEFNRWLRILASKKGFKLSQHGLFT-------NEGQLLES---FD-EKNMFKLL 550
Query: 500 GFPWLEPHER 509
G +LEP +R
Sbjct: 551 GVDYLEPTQR 560
>gi|15678578|ref|NP_275693.1| DNA-dependent DNA polymerase X protein [Methanothermobacter
thermautotrophicus str. Delta H]
gi|2621626|gb|AAB85056.1| DNA-dependent DNA polymerase family X [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 550
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 88/325 (27%), Positives = 149/325 (45%), Gaps = 41/325 (12%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESA---DQVKGLPGIGKSM 266
N + I ++ + G++ R+ +Y +A +E L IE +++ LPGIG+++
Sbjct: 3 NHLVAHILNRVADYMELAGDEFRTKAYRRAARTVEFLNEDIEEVAARGRLQELPGIGRNI 62
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNE 325
I+EI++TG L LE ++ V SL V G+GP T + LYE+ G +TL DL+ +
Sbjct: 63 AGKIEEILSTGSLQLLERLSEEYPVDLDSLLS-VEGVGPRTVKLLYEELGIKTLADLEEQ 121
Query: 326 DSLTHS----------QRLGLKYFDDIKTRIPRHEVEQMERLLQ--KAGEEVLPEVI-IL 372
+ + L+ + ++RI R + + L KAG L V +
Sbjct: 122 ARRHRIRRLRGMGEKREAMILRNIELARSRISRRPLAYVVPLASRIKAGLLELEGVQRVE 181
Query: 373 CGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY--VKKL------KEMKFLREDLIFST 424
GS RRG+ + GD+D+++ D ++ + V+++ K LRE L
Sbjct: 182 VAGSIRRGRETVGDIDILVTATDPEAVMDHFTSMDEVEEVVVRGPRKSTVRLREGLDCDL 241
Query: 425 HSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRAR 484
V+ +++ L+ +TG+ N LR A S +L + GLF G + V R
Sbjct: 242 R---VFDDEVFGSALLYFTGSWEFNVELRRRAISSSMKLSEYGLFR------GDERVAGR 292
Query: 485 TSLKFDTEKEVFDFLGFPWLEPHER 509
TE V + LG ++EP R
Sbjct: 293 ------TEAGVLEALGLSYIEPELR 311
>gi|337286473|ref|YP_004625946.1| PHP domain-containing protein [Thermodesulfatator indicus DSM
15286]
gi|335359301|gb|AEH44982.1| PHP domain protein [Thermodesulfatator indicus DSM 15286]
Length = 579
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 88/328 (26%), Positives = 145/328 (44%), Gaps = 46/328 (14%)
Query: 210 NKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIE---SADQVKGLPGIGKS 265
NK + +IF K+ + G++ R +Y +A IE L +E + +++ +PGIGK
Sbjct: 3 NKEVADIFRKIAALLEIKGDNPYRIRAYQRAAQNIEALTVDVEELAAKGKLERIPGIGKD 62
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKN 324
+ I EI+ TG L K E K E + F E+ G GP A+ +YE G +T+++L+
Sbjct: 63 LAQKIIEILETGTLQKYEEL-KQEIPPELLKFLEIPGFGPKKAKIVYETLGIKTIEELEK 121
Query: 325 EDSLTHSQRL-------------GLKYFDDIKTRIPRHEV----EQMERLLQKAGEEVLP 367
RL G+K + R+P V E++ LL+K P
Sbjct: 122 ACLEHRLSRLPGFGPKTEQNILKGIKLLKQKRGRLPIGLVLPWAEEIVALLKKKS----P 177
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPDR-KSHKGFLS-----KYVKKLKEMKFLREDLI 421
I GS RR + + D+D+++ D K F+S + + K + +R
Sbjct: 178 VERIDVAGSIRRRRETVKDIDILVTAKDHLKVMDVFVSLPMIDEVIAKGETKTSVRLKQG 237
Query: 422 FSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGV 481
+ P + Y L +TG+ N R+R L +G ++++ G+F GGK+
Sbjct: 238 IQVDLRVLDP-ECYGAALAYFTGSKAHNIRIRELGVQRGLKINEYGIFRGQERIGGKE-- 294
Query: 482 RARTSLKFDTEKEVFDFLGFPWLEPHER 509
E+EVF +G PW+ P R
Sbjct: 295 ----------EEEVFAAVGLPWIPPELR 312
>gi|225848762|ref|YP_002728926.1| DNA polymerase X family protein [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225644290|gb|ACN99340.1| DNA polymerase X family protein [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 582
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 150/330 (45%), Gaps = 42/330 (12%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE---SADQVKGLPGIGK 264
++NK I +IF + +IY L + R+ +Y KA V+E LP + + ++ + GIG
Sbjct: 4 NINKEIAKIFRDMAHIYEFLDDKFRALAYQKAAQVLEDLPDDVRNYIALGKLSEIRGIGT 63
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDL- 322
Q+ I E + TGK+ K E +K + L +V G GP T +++Y E G T ++L
Sbjct: 64 HTQEKIIEYIKTGKIQKYEELKKLVPPDFLELM-DVPGFGPKTLKRIYQELGISTKEELI 122
Query: 323 --KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI---------- 370
+ + + G K +++ + +E + ERLL + ++
Sbjct: 123 KALKDGRVAKLKGFGPKKVENMLKGLELYE-KSKERLLLWEALNIANTIVEKLKTLKEIK 181
Query: 371 -ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFL------REDLIFS 423
I GS RR K + GD+D++I D+ K + + L+++K + + +I
Sbjct: 182 NIELAGSLRRKKETIGDIDILISCDDKDREK--VIDFFINLEDVKEVLAKGDTKASVIIK 239
Query: 424 THSEEVYPR----DIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQ 479
+V R D + GL +TG+ N LR A+S G ++ + G+F A G
Sbjct: 240 EKDRQVDLRVLKPDEWGSGLQYFTGSKEHNVHLRDYAKSIGLKISEYGVFDAKTGE---- 295
Query: 480 GVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ DTE+ V+ +G W+ P R
Sbjct: 296 ------KIAGDTEESVYKAVGMQWIPPELR 319
>gi|194238174|ref|XP_001916245.1| PREDICTED: DNA polymerase beta-like, partial [Equus caballus]
Length = 123
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 67/113 (59%), Gaps = 1/113 (0%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN+ IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNEGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLD 320
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLE 123
>gi|374849850|dbj|BAL52854.1| DNA Polymerase X family [uncultured gamma proteobacterium]
Length = 574
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 85/325 (26%), Positives = 141/325 (43%), Gaps = 39/325 (12%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFK----IESADQVKGLPGIGK 264
N I +F +L + GE+ R +Y+ A I P + + + + LPGIG+
Sbjct: 5 NSEIAGLFDQLAELLDIEGENPFRVRAYHNAARTIRSYPKSLAEMVAAGEDLTELPGIGE 64
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL-YEKGHRTLDDLK 323
++ I+ IV TG+L +LE K + L + G+GP + L Y +TL+DL+
Sbjct: 65 AIAKKIETIVRTGRLPQLEQVLKRTPKSLLELL-RIEGLGPKRVKTLFYLLKIKTLEDLE 123
Query: 324 NEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI---------- 370
+ L GLK + I + +H +++ +R L+ E V ++
Sbjct: 124 RAARSGRIRELPGFGLKTEELILNHLQKHALQE-KRFLRFEAESVAEAILAHLKGCPGLD 182
Query: 371 -ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY--VKKLKEMKFLREDLIFSTHSE 427
I GS+RR K + GDLD++ D Y V+++ R + +
Sbjct: 183 RIEVAGSFRRWKETVGDLDILATVRDGGEVMARFLAYEGVEEVLSHGSTRSSVRLKNGLQ 242
Query: 428 ---EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRAR 484
V P + + L +TG+ N LR LA +G ++++ G+F RA
Sbjct: 243 VDLRVVPTESFGAALQYFTGSKAHNIALRTLAVKQGLKINEYGVF------------RAG 290
Query: 485 TSLKFDTEKEVFDFLGFPWLEPHER 509
L TE+EV+ LG PW+ P R
Sbjct: 291 ERLAGATEEEVYASLGLPWIAPELR 315
>gi|408406101|ref|YP_006864085.1| DNA polymerase X family [Candidatus Nitrososphaera gargensis Ga9.2]
gi|408366697|gb|AFU60427.1| DNA polymerase X family [Candidatus Nitrososphaera gargensis Ga9.2]
Length = 589
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 83/316 (26%), Positives = 141/316 (44%), Gaps = 64/316 (20%)
Query: 232 RSFSYYKAIPVIEKLPFKIE---SADQVKGL---PGIGKSMQDHIQEIVTTGKLSKLEHF 285
R+ +YY+A I LP + S + +KGL P IGK++ I+E + TGK+ LE
Sbjct: 43 RARAYYRAADTIASLPEDVAVMYSRNGIKGLLEIPSIGKAIAAKIEEYIKTGKVHTLEKM 102
Query: 286 EKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLG---------- 335
+ + + L+G + G+GP T + LY+K +KN L + R G
Sbjct: 103 KAEIPINIDELYG-LEGVGPKTIRALYDKLQ-----VKNLADLEKAAREGRLRTVPGFTE 156
Query: 336 ------LKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII---LCGGSYRRGKASCGD 386
LK + +T RH + ++ L+++ + +L + + GS RR K + GD
Sbjct: 157 RKEQDVLKKIEFFRTGRGRHIIGEVYPLIKQIEKSLLQVAGVKNAVAAGSVRRMKETIGD 216
Query: 387 LDVVIMHPDRKSHKGFLSKYVKKLKEM-------KFLR------EDLIFSTHSEEVYPRD 433
+D ++ D + F +K + +++E+ F+R DL+ V P +
Sbjct: 217 IDYLVAASDPEPVMDFFTK-MPEVQEVFGRGPAKAFVRLTSGIDADLL-------VVPEE 268
Query: 434 IYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEK 493
+ L +TG+ + LR +A SKG RL++ G+F G E+
Sbjct: 269 SWGSALQYFTGSKEHSVELRKIALSKGLRLNEWGVFKGEKRVAGA------------AEE 316
Query: 494 EVFDFLGFPWLEPHER 509
EV+ LG W+ P R
Sbjct: 317 EVYQALGLQWMPPEMR 332
>gi|392574923|gb|EIW68058.1| hypothetical protein TREMEDRAFT_32680 [Tremella mesenterica DSM
1558]
Length = 553
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 75/364 (20%), Positives = 152/364 (41%), Gaps = 75/364 (20%)
Query: 209 LNKNITEIFGKLINIYRALGEDR-----RSFSYYKAIPVIEKLPFKIESADQVKGLPGIG 263
+N++I + K I +YR EDR SY +++ +++ +P +I S + L +G
Sbjct: 200 VNQDIIDAI-KPILLYREY-EDRDQVNSNVLSYRRSLSMLKSVPRRIRSGKEAMKLADVG 257
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLDDL 322
+ + I E ++TG +++ ++ + + ++ F V+ IG TA++LY+K + RTL+D+
Sbjct: 258 EKVAIRIDEYLSTGSVAESQNILSSSRYQALNEFASVYTIGKVTAKELYDKWNCRTLEDV 317
Query: 323 KN--------------EDSLTHSQRLGLKYFDDIKTRI-------PRHEVEQMERLLQKA 361
+ ++ + + G+ + D ++ + EV+++ + +
Sbjct: 318 RKHYEFLAGEAPEVREKEKIRRRKSGGMLHVDIVEAWMGLKSELDTPDEVQEIADCVMEH 377
Query: 362 GEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLI 421
+L G YRRGK D+D+V P G L +L + + L
Sbjct: 378 LSALLDGCQYTITGGYRRGKPQSNDVDIVFCPPREGQDVGLLRDLTLRLSTVDIITHVLH 437
Query: 422 FSTHSEEV-----------------------------------YPRDIYAFGLIAWTGND 446
++ E P++ YA +++W+G+
Sbjct: 438 TTSRDAETPIHSTPNNFDNLDKAFVIFRLPGKGRLHRRVDLISAPKERYAAAVLSWSGSM 497
Query: 447 VLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEP 506
+ R LR E +G + + P+T T + TE+E+FD++G ++ P
Sbjct: 498 MFERDLRRHIERRGLKFRAGLIDPSTT-----------TEINLPTEREIFDYVGLRYVPP 546
Query: 507 HERN 510
RN
Sbjct: 547 ELRN 550
>gi|163782603|ref|ZP_02177600.1| DNA polymerase beta family protein [Hydrogenivirga sp. 128-5-R1-1]
gi|159882176|gb|EDP75683.1| DNA polymerase beta family protein [Hydrogenivirga sp. 128-5-R1-1]
Length = 581
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 90/327 (27%), Positives = 152/327 (46%), Gaps = 40/327 (12%)
Query: 210 NKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIESA---DQVKGLPGIGKS 265
NK + +IF K+ +I LG++ R SY +A +I +LP IE ++ LPGIG S
Sbjct: 5 NKELAQIFEKIADILEFLGDNIYRVNSYRRAANLISELPEDIEELYRRGKLTKLPGIGSS 64
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKN 324
I+E + TG + K E K + L +V GIGP T + YEK G R+ +D
Sbjct: 65 TLLKIEEFLRTGTVKKYEDLRKRVPEDLLELM-DVPGIGPKTLKVAYEKLGVRSKEDFIR 123
Query: 325 EDSLTHSQRL-------------GLKYFDDIKTRIPRHEVEQMER-LLQKAGEEVLPEVI 370
+L G++ ++ ++ RIP E M + +L+ E E I
Sbjct: 124 ALKDGSLAKLPGFGPKKVEKILKGIELWESVQERIPLIEAYPMAQDVLEYMKREESIENI 183
Query: 371 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFST----HS 426
+ GS RR K + GD+D+++ +RK+ + +V+ K L + S+ +
Sbjct: 184 SVA-GSLRRMKETIGDIDILVT-AERKNWRRIHEYFVRYPDVNKILAKGETKSSVVLKNG 241
Query: 427 EEVYPRDI----YAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVR 482
+V R + + L +TG+ N R+R +A+ KG ++++ G+F A
Sbjct: 242 RQVDLRTVEPESWGAALQYFTGSKEHNVRVRDIAKEKGLKVNEYGVFRAD---------- 291
Query: 483 ARTSLKFDTEKEVFDFLGFPWLEPHER 509
L ++E+EV+ +G W+ P R
Sbjct: 292 TEERLGGESEEEVYRLVGMQWIPPEIR 318
>gi|422294312|gb|EKU21612.1| DNA polymerase lambda subunit, partial [Nannochloropsis gaditana
CCMP526]
Length = 281
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 86/151 (56%), Gaps = 13/151 (8%)
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIIL-CGGSYRRGKASCGD 386
L +QR+GL+Y+++ + RIPR EV ++E +++A E + P V +L GSYRRG + CGD
Sbjct: 56 LNENQRVGLRYYEEFQERIPRSEVRKIEERVREATEALYPGVFMLTTCGSYRRGASHCGD 115
Query: 387 LDVVIMH-PDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEVYPRDIYAFGLIAWTGN 445
+D+++ +R +GFL + + L++ FL + L +T + D Y FG + G+
Sbjct: 116 VDILLAPVSERVQARGFLGRLILHLEKEGFLTDHLTDATDDKS----DSY-FG-VCRLGD 169
Query: 446 DVLNRRLRLLAESKGYRLDDTGLFPATYGSG 476
L+RRL L + L D + PA + G
Sbjct: 170 GYLHRRLDL-----KWSLTDKSMGPAVWERG 195
>gi|149195333|ref|ZP_01872420.1| DNA polymerase X family/PHP domain protein [Caminibacter
mediatlanticus TB-2]
gi|149134525|gb|EDM23014.1| DNA polymerase X family/PHP domain protein [Caminibacter
mediatlanticus TB-2]
Length = 567
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 143/328 (43%), Gaps = 45/328 (13%)
Query: 210 NKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEK----LPFKIESADQVKGLPGIGK 264
NK I I K ++ GE+ + +Y A ++E ++ + LPGIGK
Sbjct: 4 NKEIASILSKTADLLEIKGENPFKVRAYRNAARIVENSSKDFNKLVKEGFDLTRLPGIGK 63
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRT-LDDLK 323
+ I+EIV TGK KLE +K+ + + + G+GP +++Y+ T LD+LK
Sbjct: 64 DLSLFIKEIVETGKFHKLEELQKEIPPGLVDMLS-IEGLGPKRIRQIYDAFKVTSLDELK 122
Query: 324 NEDSLTHSQRL-------------GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI 370
+L G+K R +VE++ ++K + I
Sbjct: 123 KYAESGELDKLPGFGPKLIEKILKGVKQIKKAGIRFLWADVEEIAEDIRKYLLKFRGVEI 182
Query: 371 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMK---------FLREDLI 421
+ GSYRR K + GDLD++++ D + KY K++KE+ FL DL
Sbjct: 183 VEIAGSYRRKKETVGDLDILVVAEDYPKVSEYFIKY-KRVKEVHSAGLTRSTVFLDNDLQ 241
Query: 422 FSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGV 481
+ ++ Y L +TG+ N +R LA KG ++++ G++ GK
Sbjct: 242 VDLRA---VSKESYGAALHYFTGSKAHNIEIRKLAIEKGLKVNEYGVYRGDERIAGK--- 295
Query: 482 RARTSLKFDTEKEVFDFLGFPWLEPHER 509
+E+EV+ +G ++EP R
Sbjct: 296 ---------SEEEVYKAVGLCFIEPELR 314
>gi|281351517|gb|EFB27101.1| hypothetical protein PANDA_006859 [Ailuropoda melanoleuca]
Length = 208
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 104/213 (48%), Gaps = 45/213 (21%)
Query: 337 KYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRR-------------GKAS 383
+YF+D + RIPR E+ QM+ ++ ++V E I GS+ G S
Sbjct: 1 RYFEDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFXXVAVSEEVTYFLILGAES 60
Query: 384 CGDLDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL------------IFSTHSE 427
GD+DV++ HP S L + V++L+++ F+ + L + S + E
Sbjct: 61 SGDMDVLLTHPSFTSESTKQPKLLHRVVEQLQKVHFITDTLSKGDTKFMGVCQLPSKNDE 120
Query: 428 EVYP----------RDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGG 477
+ YP +D Y G++ +TG+D+ N+ +R A KG+ +++ + P G
Sbjct: 121 KEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----G 175
Query: 478 KQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
GV A L D+EK++FD++ + + EP +R+
Sbjct: 176 VTGV-AGEPLPVDSEKDIFDYIQWKYREPKDRS 207
>gi|218295448|ref|ZP_03496261.1| PHP domain protein [Thermus aquaticus Y51MC23]
gi|218244080|gb|EED10606.1| PHP domain protein [Thermus aquaticus Y51MC23]
Length = 575
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 102/336 (30%), Positives = 151/336 (44%), Gaps = 58/336 (17%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIE-----SADQVKGLPGIG 263
N+ + IF ++ + LG++ R +YY+A + L IE + + LPGIG
Sbjct: 3 NQELARIFEEIGLMGEFLGDNPFRVRAYYQAARTLYDLDTPIEEIAKKGKEALLELPGIG 62
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKV-RTISLFGEVWGIGPATAQKLYEK-GHRTLDD 321
+ D I E + TG++ K H E KV R + EV G+GP TA+ LYE G +L+
Sbjct: 63 PDLADKILEFLATGRVKK--HEELSGKVPRGVLEVMEVPGVGPKTARGLYEALGIDSLEK 120
Query: 322 LKNEDSLTHSQRLGLKYFDDIKT---------------RIPRHEVEQMER-LLQKAGEEV 365
LK ++L L LK F K R P V + R LL++
Sbjct: 121 LK--EALERGDLLRLKGFGAKKAERIKEGLLLAQAASKRRPLGAVLSLARNLLEQI--RA 176
Query: 366 LPEV--IILCGGSYRRGKASCGDLDVVI--MHPDRKSHKGFLS------KYVK-KLKEMK 414
LP V LCG S RR K + GDLD ++ + P+R GF++ Y K + +
Sbjct: 177 LPGVKKAELCG-SARRYKDTVGDLDYLVASLEPERVV-AGFVALPGVKEVYAKGRERATV 234
Query: 415 FLREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYG 474
FL+ L V P + Y GL TG+ + RLR LA+ G +L + G+F
Sbjct: 235 FLKNGLQVDLR---VVPEESYGAGLQYLTGSKEHSIRLRALAQGMGLKLSEYGVF----- 286
Query: 475 SGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
R + +TE+ V+ LG P++ P R
Sbjct: 287 -------RGEERIAGETEEGVYAALGLPFIPPPLRE 315
>gi|206901108|ref|YP_002251308.1| DNA polymerase subunit beta [Dictyoglomus thermophilum H-6-12]
gi|206740211|gb|ACI19269.1| DNA polymerase beta family [Dictyoglomus thermophilum H-6-12]
Length = 580
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 88/333 (26%), Positives = 149/333 (44%), Gaps = 51/333 (15%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYK-AIPVIEKLPFKIES---ADQVKGLPGIGKS 265
NK + +I ++ + GE++ + Y+ A IE LP IE ++ + GIG+S
Sbjct: 3 NKEVAQILDEIATLLEIKGENKYKIAAYQEAARRIENLPEDIEKLFKQGKLYQIKGIGES 62
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKN 324
+ I+E +TTGK++ LE ++ + L ++ GIGP A +LY E G + +D L+
Sbjct: 63 IGQKIKEYLTTGKVTYLEELRREIPPEILELL-KIPGIGPKLAYRLYTELGIKDIDSLEK 121
Query: 325 ---EDSLTHSQRLGLKYFDDIKTRIPRHEVEQM--ERLLQKAGEEVLPEVI--------- 370
E + RLG K +I I + +Q ER+ + E++
Sbjct: 122 AAREGKIRLLPRLGPKVEQNILEAIKEYREKQNVPERIPLGVALPLTEEIVNYLSQYPFI 181
Query: 371 --ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE 428
I+ GS RR K + GD+D++I D + K + LK + LR L T
Sbjct: 182 ENIVPAGSLRRRKETIGDIDILITTSD-------MDKVNQVLKNLPILRNILAAGTTKTS 234
Query: 429 VYPR----------DIYAFG--LIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSG 476
+ D +FG L +TG+ N +LR LA KG ++++ G+F
Sbjct: 235 IIVEPGIQVDFRVVDKSSFGAALQYFTGSKQHNIKLRELAIKKGLKINEYGVF------- 287
Query: 477 GKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ + + E+EV++ LG ++ P R
Sbjct: 288 ---RISDNRKIGGEKEEEVYEILGLQYIPPELR 317
>gi|390595703|gb|EIN05107.1| Nucleotidyltransferase, partial [Punctularia strigosozonata
HHB-11173 SS5]
Length = 165
Score = 79.0 bits (193), Expect = 6e-12, Method: Composition-based stats.
Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 31/162 (19%)
Query: 379 RGKASCGDLDVVIMHP--DRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE-------- 428
RGKA CGD+D++I P DR+ H+G L + ++ L+E K + EDL + E
Sbjct: 1 RGKADCGDIDILITRPTYDRRDHRGILRRLLRALREAKIITEDLAVPNYDELDGLEGCYR 60
Query: 429 -------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLF 469
P + L+ +TG+D+ NR +RL A G+ L+ GLF
Sbjct: 61 GLCRLPNVEGAKRRRIDFLTVPWECRGAALLYYTGDDIFNRSMRLKANKMGWSLNQRGLF 120
Query: 470 PATYGSGGKQGVRARTSLKFD--TEKEVFDFLGFPWLEPHER 509
+ V+ + TE+E+F+ LG PW EPHER
Sbjct: 121 ANVVRDPRDRRVKMTQGKRIAGATEREIFEKLGVPWQEPHER 162
>gi|256393553|ref|YP_003115117.1| PHP domain-containing protein [Catenulispora acidiphila DSM 44928]
gi|256359779|gb|ACU73276.1| PHP domain protein [Catenulispora acidiphila DSM 44928]
Length = 579
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 83/311 (26%), Positives = 136/311 (43%), Gaps = 48/311 (15%)
Query: 228 GEDRRSFSYYKAIPVIEKLPFKIESADQ--VKGLPGIGKSMQDHIQEIVTTGKLSKLEHF 285
G R+ SY KA + P + D+ ++ +PG+G S + I E + +G++ LE
Sbjct: 24 GNAFRARSYEKAARSVGGYPGDLAHLDEAGLRAIPGVGDSTAEKISEYLASGRMEALESL 83
Query: 286 EKD--EKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK---NEDSLTHSQRLGLKYF 339
VR ++ ++ G+GP TA LY K G +++D+L+ + L LG K
Sbjct: 84 RAKIPPGVREVT---QIPGVGPKTAVLLYRKLGIKSVDELRKAADAGKLKGLPGLGEKTV 140
Query: 340 DDIKTRIPRHEVEQMER-----LLQKA---GEEVLPEVIILCG-------GSYRRGKASC 384
++I RH +EQ+ + LL A E+++ E+ + G GS RR + +
Sbjct: 141 ENI-----RHGIEQLSQASGRTLLSIALDLAEDLVAELGAVPGCKKCDYAGSLRRMRETV 195
Query: 385 GDLDVVIMHPDRKSHKGFL------SKYVKKLKEMKFLREDLIFSTHSEEVYPRDIYAFG 438
GD+D++ D L + + +R D V P + +
Sbjct: 196 GDIDILATAKDSAPLMAALLARPEVADVIGSGTTKTSIRTDKGLQVDLRVVQPAE-WGAA 254
Query: 439 LIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDF 498
L+ +TG+ N +LR A +G +L + GLF G L TEKEV+
Sbjct: 255 LVYFTGSRAHNIKLRGRAVKEGLKLSEYGLFDVESGK----------KLASRTEKEVYAA 304
Query: 499 LGFPWLEPHER 509
LG PW+ P R
Sbjct: 305 LGLPWIPPTLR 315
>gi|9631347|ref|NP_048188.1| ORF MSV117 putative DNA polymerase beta/AP endonuclease, similar to
Rattus norvegicus GB:M13962 and Caenorhabditis elegans
GB:Z47812 [Melanoplus sanguinipes entomopoxvirus]
gi|4049700|gb|AAC97660.1| ORF MSV117 putative DNA polymerase beta/AP endonuclease, similar to
Rattus norvegicus GB:M13962 and Caenorhabditis elegans
GB:Z47812 [Melanoplus sanguinipes entomopoxvirus]
Length = 603
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 90/338 (26%), Positives = 154/338 (45%), Gaps = 61/338 (18%)
Query: 209 LNK-NITEIFGKLINIYRALGEDRRSFSYYKAIPVIE-----------------KLPFKI 250
LNK I + + NIY L E++ +Y KAI I KL +
Sbjct: 288 LNKRKIIYMLHNIANIYEKLDENKYK-AYNKAINSIYEQGIIILKYNNTTINSPKLVDNM 346
Query: 251 ESA-DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQ 309
E+ + K +P IG S+ I I++ + +++ ++ + I+ V IGP TA+
Sbjct: 347 ETVISKYKDIPNIGDSISKKIYNIISN---TYIDNISNTKEYKYITELMNVLYIGPKTAK 403
Query: 310 KLYEKGHRTLDDL-KNEDSLTHS-QRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
L KG +T+ DL KN+D +S Q++ ++Y+D +K I R + +E ++ + +
Sbjct: 404 NLISKGIKTIKDLKKNKDKYLNSQQQIAIEYYDKLKP-INRSFISNLESSIKLSPNK--- 459
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKK---LKEMKFLREDL---- 420
E IL GSY RGK + D+D++I+ D + KY K+ L+ K + +
Sbjct: 460 EWYIL--GSYARGKLTSKDIDILIVDFDIDEILKEIYKYAKEEAVLRHGKIMYSGIFKKD 517
Query: 421 -------IFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATY 473
I+ T E Y Y +TG+ N LR LA SK RL+ ++
Sbjct: 518 KTYFLIDIYKTTESEKYTSIQY------FTGSKEFNIALRSLALSKDIRLNQHEMY---- 567
Query: 474 GSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 511
++ + +EK++FD LG ++ P +R++
Sbjct: 568 ------DLQTQKKYNIKSEKDIFDILGVKYVPPSKRDI 599
>gi|290559313|gb|EFD92648.1| PHP domain protein [Candidatus Parvarchaeum acidophilus ARMAN-5]
Length = 569
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 136/281 (48%), Gaps = 35/281 (12%)
Query: 250 IESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQ 309
I A ++ L G+GKS+ + I E + TGK+ K + ++D + ++ F ++ G+GP
Sbjct: 47 IYKAGKLTQLEGVGKSIAESITEYIETGKIKKYDKLKRDYPI-DLTTFRKIRGLGPKRVY 105
Query: 310 KLYEKGH-RTLDDLKN---EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQ----KA 361
LY+K + LDDLK+ + + + G K D++K I + ERLL
Sbjct: 106 FLYKKLKIKNLDDLKSAIESHKIMNLEGFGEKSEDELKRSIESFMSIKEERLLLGYVIDY 165
Query: 362 GEEVLPEVI-------ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEM- 413
E ++ +++ + GS RR K + GD+D++ + + ++ F S + ++K +
Sbjct: 166 TENIINKLVKSGFFEKVKIAGSMRRMKETIGDIDILAISENPEAGMNFFSN-LDEVKSII 224
Query: 414 -----KFLREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGL 468
K E I +T + RD + + +TGN N +LR +A SKG +L++ GL
Sbjct: 225 VSGPTKTTVELGIGTTCDIRILKRDSFGAAMQYFTGNKDHNVKLRKIAISKGLKLNEYGL 284
Query: 469 FPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
F GK+ + + E++++ LG W+ P R
Sbjct: 285 FK------GKKIIAEK------DEEKIYRELGMDWIPPELR 313
>gi|381190731|ref|ZP_09898248.1| DNA-dependent DNA polymerase beta chain [Thermus sp. RL]
gi|380451440|gb|EIA39047.1| DNA-dependent DNA polymerase beta chain [Thermus sp. RL]
Length = 575
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 102/333 (30%), Positives = 152/333 (45%), Gaps = 52/333 (15%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESADQVKG------LPGI 262
N+ + IF ++ + LG++ R +Y++A + L IE + KG LPGI
Sbjct: 3 NQELARIFEEIGLMSEFLGDNPFRVRAYHQAARTLYDLDTPIEEIAE-KGKEALLELPGI 61
Query: 263 GKSMQDHIQEIVTTGKLSKLEHFEKDEKV-RTISLFGEVWGIGPATAQKLYEK-GHRTLD 320
G + + I E + TG+++K H E +KV R + EV G+GP TA+ LYE G +L+
Sbjct: 62 GPDLAEKILEFLKTGRIAK--HEELAQKVPRGVLEVMEVPGVGPKTARLLYEGLGIDSLE 119
Query: 321 DLK---NEDSLTHSQRLGLKYFDDIK----------TRIPRHEVEQMERLLQKAGEEVLP 367
LK + LT + G K + I+ R P V + R L +A LP
Sbjct: 120 KLKAALDRGDLTRLKGFGPKKAERIREGLALAQAAGKRRPLGAVLSLARSLLEAIRG-LP 178
Query: 368 EV--IILCGGSYRRGKASCGDLDVVIMHPD-RKSHKGFL------SKYVK-KLKEMKFLR 417
V LCG S RR K + GDLD ++ + + +GF+ Y K K + FL
Sbjct: 179 GVERAELCG-SARRYKDTVGDLDFLVASREGERVVEGFVRLPQVKEXYAKGKERATVFLN 237
Query: 418 EDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGG 477
L V P + Y GL TG+ + RLR LA+ KG +L + G+F
Sbjct: 238 NGLQVDLR---VVPPESYGAGLQYLTGSKAHSIRLRALAQEKGLKLSEYGVF-------- 286
Query: 478 KQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
R L +TE+ V+ LG P++ P R
Sbjct: 287 ----RGEKRLAGETEEGVYAALGLPFIPPPLRE 315
>gi|126179729|ref|YP_001047694.1| phosphotransferase domain-containing protein [Methanoculleus
marisnigri JR1]
gi|125862523|gb|ABN57712.1| PHP C-terminal domain protein [Methanoculleus marisnigri JR1]
Length = 543
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 86/314 (27%), Positives = 135/314 (42%), Gaps = 43/314 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESADQ--VKGLPGIGKSM 266
N+++ E + + GEDR R +Y +A I++L F + D+ + +PGIG +
Sbjct: 10 NRDVAERLAFMARLLGIAGEDRYRIAAYERAARQIDRLSFPVAGLDEEELTRIPGIGDRI 69
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNE 325
I+EI TG +L+ + + + G V G+GP T LY++ G R+LDDL+
Sbjct: 70 AGQIREIAATGTFGELKDLQATIPGSVVEMLG-VAGLGPRTLHILYKRLGIRSLDDLERA 128
Query: 326 DSLTHSQRL----GLKYFDDIKTRIP--RHEVEQMER----LLQKAGEEVLPEVIILCGG 375
H R+ G K + IK I R +M R + LP+ G
Sbjct: 129 VK-GHRLRVLSGFGSKKEEAIKRGIAQFRQRSNRMTRPQAEAVLAYVAAALPDGRYTVAG 187
Query: 376 SYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEVYPRDIY 435
SYRRG ++ G L++V+ G S ++ D + S +D Y
Sbjct: 188 SYRRGSSTVGRLEIVV--------AGNGSAVADRIP------PDAGVNVRST---GKDRY 230
Query: 436 AFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEV 495
L+ TG+ L +A ++GYRL GL + G +F +E+EV
Sbjct: 231 GTALLCATGSAGFLAGLGHVAAARGYRLTPDGLTDSANGR----------LQEFASEEEV 280
Query: 496 FDFLGFPWLEPHER 509
F FLG + P R
Sbjct: 281 FSFLGMETVPPELR 294
>gi|401416300|ref|XP_003872645.1| putative mitochondrial DNA polymerase beta-PAK [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322488869|emb|CBZ24119.1| putative mitochondrial DNA polymerase beta-PAK [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 673
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 112/266 (42%), Gaps = 81/266 (30%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAI-------------------------- 240
PD + + +IF +L I ALGE +S SY + +
Sbjct: 141 PDYRERVVQIFEQLTQINSALGERFKSQSYGRTVERFKRGDKVFQLLPPNLLPLPEDDPK 200
Query: 241 --PVIEKLPFKIESADQVKG--------------------LPGIGKSMQDHIQEIVTTGK 278
VIE L +K + A Q K +PG+G +++ + EI+ TG
Sbjct: 201 KKAVIEAL-YKDDPAAQKKRVEEVERNRAKRSLVLSSDNLIPGLGTKLREKVIEILVTGG 259
Query: 279 LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLD------------DLKNE 325
L +L H E +R I +V G+GP TA ++K RT+ D+ N+
Sbjct: 260 LEELHHQEAKPIIRAIRELTQVHGVGPRTAIDYFKKYDIRTVAQLRDYAIKAGELDMSNK 319
Query: 326 DS----------------LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE- 368
DS L +QRLGL Y++D+ RIP E E ++ + L +
Sbjct: 320 DSGKPSNLVVCADKSKFHLNDAQRLGLVYYEDMCHRIPHEEGRLHEAFMKLRMRKYLGKD 379
Query: 369 -VIILCGGSYRRGKASCGDLDVVIMH 393
+++C GSYRR S GD+DV+I H
Sbjct: 380 YELVVC-GSYRRQVESAGDIDVLITH 404
>gi|410080590|ref|XP_003957875.1| hypothetical protein KAFR_0F01440 [Kazachstania africana CBS 2517]
gi|372464462|emb|CCF58740.1| hypothetical protein KAFR_0F01440 [Kazachstania africana CBS 2517]
Length = 591
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 77/270 (28%), Positives = 115/270 (42%), Gaps = 24/270 (8%)
Query: 133 SDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPDF 192
S ES I+ S++ + A K V+ N ++ +SE ++N D
Sbjct: 141 SANESQEETDIEGSSDII----AMPKKKVKLNGSEMKVDNLDASEPVSNN--------DT 188
Query: 193 SSHHITDPSLLYNPPDLNKN--ITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKI 250
H+TD L P KN + + +L Y G+ R+ SY A IE+ PF I
Sbjct: 189 PGMHVTD---LIASPSRAKNALLLDAMSRLYQKYETKGDKFRAKSYKFAKTSIEQCPFVI 245
Query: 251 ESADQVKG-LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQ 309
ES Q + L IG S+ IQ I+ G L L + E + F G+GP A+
Sbjct: 246 ESGKQAQEELQTIGPSIAKKIQTILDFGTLPGLT--DTSELETKVDYFKTCHGVGPHRAK 303
Query: 310 KL----YEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEV 365
+ YE L E S G YF++ RI R E ++++ E V
Sbjct: 304 RWHLLRYESFSDVLRKAPEEMSNDWPILFGWSYFEEWSKRITRKECNVHLEIIKEELERV 363
Query: 366 LPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
P V + GSY RG ++CGD+D++ P+
Sbjct: 364 DPSVEVEIQGSYIRGASTCGDIDLLFFKPN 393
>gi|390466524|ref|XP_002751420.2| PREDICTED: DNA-directed DNA/RNA polymerase mu isoform 3 [Callithrix
jacchus]
Length = 302
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 71/127 (55%), Gaps = 1/127 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N ++TE L G + R ++ +A V++ LP + + Q++GLP +G+
Sbjct: 153 NTSLTEALETLAEAAGFEGSEGRLLAFCRAASVLKALPSPVTTLSQLQGLPQLGEHSSRV 212
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-L 328
+QE++ G ++E E+ +T+ LF +V+G+G TA + Y +G RTLDDL+ + L
Sbjct: 213 VQELLEHGVCEEVERVRSSERYQTMKLFTQVFGVGVRTADRWYREGLRTLDDLREQPQKL 272
Query: 329 THSQRLG 335
T Q++G
Sbjct: 273 TQQQKVG 279
>gi|384431336|ref|YP_005640696.1| PHP domain-containing protein [Thermus thermophilus SG0.5JP17-16]
gi|333966804|gb|AEG33569.1| PHP domain protein [Thermus thermophilus SG0.5JP17-16]
Length = 575
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 102/333 (30%), Positives = 152/333 (45%), Gaps = 52/333 (15%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESADQVKG------LPGI 262
N+ + IF ++ + LG++ R +Y++A + L IE + KG LPGI
Sbjct: 3 NQELARIFEEIGLMSEFLGDNPFRVRAYHQAARTLYDLDTPIEEIAE-KGKEALLELPGI 61
Query: 263 GKSMQDHIQEIVTTGKLSKLEHFEKDEKV-RTISLFGEVWGIGPATAQKLYEK-GHRTLD 320
G + + I E + TG+++K H E +KV R + EV G+GP TA+ LYE G +L+
Sbjct: 62 GPDLAEKILEFLKTGRIAK--HEELAQKVPRGVLEVMEVPGVGPKTARLLYEGLGIDSLE 119
Query: 321 DLK---NEDSLTHSQRLGLKYFDDIK----------TRIPRHEVEQMERLLQKAGEEVLP 367
LK + LT + G K + I+ R P V + R L +A LP
Sbjct: 120 KLKAALDRGDLTRLKGFGPKKAERIREGLALAQAAGKRRPLGAVLSLARSLLEAIRG-LP 178
Query: 368 EV--IILCGGSYRRGKASCGDLDVVIMHPD-RKSHKGFL------SKYVK-KLKEMKFLR 417
V LCG S RR K + GDLD ++ + + +GF+ Y K K + FL
Sbjct: 179 GVERAELCG-SARRYKDTVGDLDFLVASREGERVVEGFVRLPQVKEIYAKGKERATVFLN 237
Query: 418 EDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGG 477
L V P + Y GL TG+ + RLR LA+ KG +L + G+F
Sbjct: 238 NGLQVDLR---VVPPESYGAGLQYLTGSKAHSIRLRALAQEKGLKLSEYGVF-------- 286
Query: 478 KQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
R L +TE+ V+ LG P++ P R
Sbjct: 287 ----RGEKRLAGETEEGVYAALGLPFIPPPLRE 315
>gi|73669152|ref|YP_305167.1| bifunctional DNA polymerase X family protein/ histidinol
phosphatase [Methanosarcina barkeri str. Fusaro]
gi|72396314|gb|AAZ70587.1| DNA polymerase X family / putative histidinol phosphatase
[Methanosarcina barkeri str. Fusaro]
Length = 584
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 91/338 (26%), Positives = 142/338 (42%), Gaps = 53/338 (15%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKG------LPGIG 263
N+ I E+F + +I + + +Y KA +IE L IE +G +PGIG
Sbjct: 3 NREIAELFYEAADILEYQQVEWKPRAYRKAAQMIENLGEDIEKIYAREGKAGLTKIPGIG 62
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDL 322
+S+ DHI E + T K+ K E ++ T L E+ G+G +KL + G RTL DL
Sbjct: 63 ESIADHISEYLETNKVEKFEKLKEKAPSGTAELM-EIRGLGAKKIKKLSDTLGVRTLSDL 121
Query: 323 KNEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVLPEVIILC--- 373
KN +RL G K ++ I ++E L KA +EV+ + C
Sbjct: 122 KNAIIAHRLKRLEGFGEKSEKNLARAIEQYEKSHARLALGKALPLADEVISALKAQCESR 181
Query: 374 -----------GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVK-----------KLK 411
GS RR K + GD+D ++ +++ + +V K
Sbjct: 182 TSKIDLSKIIYTGSLRRLKETIGDID-ILAEAEKEEALKVMDCFVSLPDVEQVILKGSTK 240
Query: 412 EMKFLREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPA 471
LRE V P + Y L +TG+ N LR +A GY+L + GL+
Sbjct: 241 SSVILREGTAIDLR---VVPPESYGAALQYFTGSKEHNIELRNVAIKNGYKLSEYGLY-- 295
Query: 472 TYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
GKQ + +E E+++ LG ++ P R
Sbjct: 296 -LKESGKQ-------IAGSSEAEIYERLGLAYIPPELR 325
>gi|333987104|ref|YP_004519711.1| PHP domain-containing protein [Methanobacterium sp. SWAN-1]
gi|333825248|gb|AEG17910.1| PHP domain protein [Methanobacterium sp. SWAN-1]
Length = 566
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 75/326 (23%), Positives = 146/326 (44%), Gaps = 44/326 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESA---DQVKGLPGIGKSM 266
N+ + I ++ ++ G D R+ +Y +A +E L I+ +++ LPGIGK++
Sbjct: 3 NRKVATILNRIADLLEMDGVDFRTKAYRRAAHTVEFLSRDIQDVRNEGKLEELPGIGKNL 62
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNE 325
I+EI+ TG L E+ +K+ V +L + G+GP + + LY E G + L+DL+
Sbjct: 63 SKKIEEIIDTGSLEYYENLKKEFPVDFEALVA-IEGLGPKSIKLLYDELGIKNLEDLEK- 120
Query: 326 DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILC------------ 373
++R ++ + + +E ++ + G +L +++ L
Sbjct: 121 ----AAKRHRIRRLKGMGDKKEHQIIENLKFARKTTGRTLLGQILPLAEGIKKELEKSDV 176
Query: 374 -----GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY--VKKLKEMKFLREDLIFSTHS 426
GS RR + + GD+D++++ K + + V K+ L+ +
Sbjct: 177 SDVEIAGSIRRMQETVGDIDILVVTDKPKQVMDYFTSMDEVGKIIVKGLLKSTIRLKNGV 236
Query: 427 E---EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRA 483
+ V+ D + L+ +TG+ N +R +A G +L++ G++ GK
Sbjct: 237 QVDIRVFNEDSFGSALLYFTGSKETNIDMRKIAIRNGLKLNEYGVYMDEKQIAGK----- 291
Query: 484 RTSLKFDTEKEVFDFLGFPWLEPHER 509
TE+EVF LG ++EP R
Sbjct: 292 -------TEEEVFRKLGMQYIEPELR 310
>gi|407832611|gb|EKF98510.1| mitochondrial DNA polymerase beta-PAK, putative [Trypanosoma cruzi]
Length = 629
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 89/376 (23%), Positives = 148/376 (39%), Gaps = 114/376 (30%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPF------------------ 248
PD + + +IF +L I AL E ++ SY A+ +++ F
Sbjct: 98 PDHREKVLQIFQRLAEINNALQERYKAQSYQIAVDNLKRDDFIFVHLPPNILPPGVDDAK 157
Query: 249 KIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATA 308
+ E + V P +G+ ++ I EI++ G L++L + +R I +V G+GP TA
Sbjct: 158 RTEQLNAVSATPVVGEKLKAKIVEILSMGDLAELHSLQAKPIIRAIQELTQVHGVGPRTA 217
Query: 309 QKLYEK-GHRTLDDLK--------------------------------------NEDS-- 327
Y+K G +++ +L+ N+D
Sbjct: 218 VTFYKKYGIKSVAELQQRVKDHEAEKGIGDGDRDGSNCGNSGGAKKGSKKTSAGNDDPVL 277
Query: 328 -LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE--VIILCGGSYRRGKASC 384
LT +QRLGLKY DI RIP EV E L+ + L + + +C GSYRR + +
Sbjct: 278 HLTEAQRLGLKYHRDIMQRIPYEEVRLHEAFLKLRLRKYLGKGYELSIC-GSYRRRQPTS 336
Query: 385 GDLDVVIMHP---------DRKSHKG--------------FLSKYVKKLKEMKFLREDLI 421
GD+DV+I KS KG L+ +V+ LK +++ L
Sbjct: 337 GDIDVLITRKMNGKGPVIRRTKSKKGGQHHSDEQVLAPQEVLAAFVEALKRERYIEATLA 396
Query: 422 ------------------FSTHSEEVYPR----------DIYAFGLIAWTGNDVLNRRLR 453
S ++YP + + L+ +TG+ N +R
Sbjct: 397 QGATKFMGVSRLRSYNYNAGATSPKLYPARRLDIRFVEPECFPAALLYFTGSKHFNVVMR 456
Query: 454 LLAESKGYRLDDTGLF 469
A + + L++ GLF
Sbjct: 457 AEAIKQNFVLNEYGLF 472
>gi|296121981|ref|YP_003629759.1| DNA-directed DNA polymerase [Planctomyces limnophilus DSM 3776]
gi|296014321|gb|ADG67560.1| DNA-directed DNA polymerase [Planctomyces limnophilus DSM 3776]
Length = 570
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 87/334 (26%), Positives = 138/334 (41%), Gaps = 56/334 (16%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKI-----ESADQVKGLPGIG 263
N I +L ++ LGE+ R +Y A IE LP ++ +S + L GIG
Sbjct: 3 NSQIAAALTELADLLELLGENAFRVRAYRNAARTIESLPDEVTLLLDQSPHALLELEGIG 62
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLDDL 322
K + I + TTG+L +L+ + + ++ G+GP L+++ TLDDL
Sbjct: 63 KDLAQKISSLATTGQLDQLDEVRSQVPPGVVQML-KIPGLGPKKVATLWKELQVNTLDDL 121
Query: 323 -----------------KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQK-AGEE 364
K E S+ L + + I R EQ+ + L+K AG E
Sbjct: 122 QAAATAGRVAELKGFGKKTEQSILEGISLAAEAGRRVLISIAREAAEQIAQSLRKVAGVE 181
Query: 365 VLPEVIILCGGSYRRGKASCGDLDVVIMHPDRK------SHKGFLSKYVKKLKEMKFLRE 418
+ GS RR K +CGDLD++ + D S +S+ V + + + +R
Sbjct: 182 RVE-----IAGSARRWKETCGDLDLLAIAADSTTAMDELSQHPLVSQVVARGETKQHVRL 236
Query: 419 DLIFSTHSEEVYPRDIYAFGLIAW---TGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS 475
V P +FG AW TG+ N +R LA+ KG +L++ GLF
Sbjct: 237 KSGIDLDLRVVPPE---SFG-AAWQYFTGSKEHNVVMRRLAQEKGLKLNEYGLF------ 286
Query: 476 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
R + E+ ++ L PW+ P R
Sbjct: 287 ------RGEEMVAGTDEESIYKTLELPWIPPELR 314
>gi|345806421|ref|XP_003435430.1| PREDICTED: DNA-directed DNA/RNA polymerase mu-like, partial [Canis
lupus familiaris]
Length = 645
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 84/396 (21%), Positives = 154/396 (38%), Gaps = 70/396 (17%)
Query: 132 SSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPD 191
+S E+SH ++ +++T + + D+ S A P+ E + L A+
Sbjct: 11 TSAEEASHWQEHRAATASPQRCSRPALLDISWFTESMAAGQPVPVEC-RHRLEVAAPRKG 69
Query: 192 FSSHHITDPSLLYNPPDL---NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPF 248
P P L N +++E L G + R S+ +A V++ LP
Sbjct: 70 LPCPARMLPYACQRPTPLTHHNSSLSEALEMLAEAAGFEGSEGRFLSFRRAAAVLKALPS 129
Query: 249 KIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATA 308
+ + Q++GLP G+ + +QE++ G ++E E+ +T+ P
Sbjct: 130 PVTALSQLQGLPHFGEHSRRVVQELLEQGVCEEVERVRLSERYQTMK--------APPRE 181
Query: 309 QKLY--EKGH---RTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGE 363
L+ E+G R K ++ S GL+++ D+ T + R + E + +L++ A
Sbjct: 182 SLLWKREEGRWRARAGGAWKVRRAVLSS---GLQHYRDLSTPVQRPDAEALLQLVKAAVA 238
Query: 364 EVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFL------- 416
+LP + G +RRGK D+D+++ HP G L K ++ L++ +
Sbjct: 239 PILPGATVTLAGGFRRGKLQGHDVDLLLSHPQEGREAGLLPKVMQCLEKQGLVLYQQHHR 298
Query: 417 -----REDLIFSTHSEEVYPR------------------------------DIYA----- 436
E +H + + R D+ A
Sbjct: 299 GGCGHAEPPPRQSHPMDAFERTFCILGLPQPSGVPVGSTQGPCPTRKAVRVDLVAVPISR 358
Query: 437 --FGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLF 469
F L+ WTG+ R LR + +G L+ GLF
Sbjct: 359 LPFALLGWTGSKHFQRELRRFCRKERGLWLNSCGLF 394
>gi|71666010|ref|XP_819969.1| mitochondrial DNA polymerase beta-PAK [Trypanosoma cruzi strain CL
Brener]
gi|70885293|gb|EAN98118.1| mitochondrial DNA polymerase beta-PAK, putative [Trypanosoma cruzi]
Length = 629
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 89/376 (23%), Positives = 148/376 (39%), Gaps = 114/376 (30%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPF------------------ 248
PD + + +IF +L I AL E ++ SY A+ +++ F
Sbjct: 98 PDHREKVLQIFQRLAEINNALQERYKAQSYQIAVDNLKRDDFIFVHLPPNILPPGVDDAK 157
Query: 249 KIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATA 308
+ E + V P +G+ ++ I EI++ G L++L + +R I +V G+GP TA
Sbjct: 158 RTEQLNAVSATPVVGEKLKAKIVEILSMGDLAELHSLQAKPIIRAIQELTQVHGVGPRTA 217
Query: 309 QKLYEK-GHRTLDDLK--------------------------------------NEDS-- 327
Y+K G +++ +L+ +ED
Sbjct: 218 VTFYKKYGIKSVAELQQRVKDHEAEKGIGDGDRDGGNCGNSGGAKKGSKKTSAGDEDPVL 277
Query: 328 -LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE--VIILCGGSYRRGKASC 384
LT +QRLGLKY DI RIP EV E L+ + L + + +C GSYRR + +
Sbjct: 278 HLTEAQRLGLKYHRDIMQRIPYEEVRLHEAFLKLRLRKYLGKGYELSIC-GSYRRRQPTS 336
Query: 385 GDLDVVIMHP---------DRKSHKG--------------FLSKYVKKLKEMKFLREDLI 421
GD+DV+I KS KG L+ +V+ LK +++ L
Sbjct: 337 GDIDVLITRKMNGKGPAIRRTKSKKGGHHHSDEQVLAPQEVLAAFVEALKRERYIEATLA 396
Query: 422 ------------------FSTHSEEVYPR----------DIYAFGLIAWTGNDVLNRRLR 453
S ++YP + + L+ +TG+ N +R
Sbjct: 397 QGATKFMGVSRLRSYNYNAGATSPKLYPARRLDIRFVEPECFPAALLYFTGSKHFNVVMR 456
Query: 454 LLAESKGYRLDDTGLF 469
A + + L++ GLF
Sbjct: 457 AEAIKQNFVLNEYGLF 472
>gi|386812371|ref|ZP_10099596.1| DNA polymerase [planctomycete KSU-1]
gi|386404641|dbj|GAB62477.1| DNA polymerase [planctomycete KSU-1]
Length = 574
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 89/332 (26%), Positives = 142/332 (42%), Gaps = 54/332 (16%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIE---SADQVKGLPGIGKS 265
N I +F ++ N+ GE+ R SY KA ++ + IE ++K +PGIG+
Sbjct: 3 NHEIAALFERIANVLELKGENAFRINSYRKAARILGDVTEDIEVLAREGKLKDIPGIGEG 62
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKN 324
M + I E + TGK+SK + K+ TI+L ++ G+GP T L +K G +L DL
Sbjct: 63 MAEKIMEYIHTGKMSKYDEVMKEISEETITLM-QIPGLGPKTVAMLNKKLGIVSLSDL-- 119
Query: 325 EDSLTHSQRLGLKYFDDIKTRIPRHEVE----QMERLLQKAGEEVLPEVI---------- 370
E +L + GL D K + +E +R+ V+ +I
Sbjct: 120 EKALQEGKLKGLFGMGDKKIQNIMRGIELFKTSQQRIPIGMAYPVVKGIIEVLKHHSQTR 179
Query: 371 -ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLRE-----DLIFST 424
I GS RR K + GD+D++ + VK M+ + + D S
Sbjct: 180 DIQSAGSLRRMKETVGDIDILATGTHGED-------IVKSFVTMRGVTQILAAGDTKGSV 232
Query: 425 HSEE-------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGG 477
EE V D + L +TG+ N LR +A+ KGY++ + G+F GG
Sbjct: 233 RVEEGVQVDLRVVREDEFGSALQYFTGSKEHNVHLREIAKKKGYKISEYGIFKDNKKIGG 292
Query: 478 KQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ E+E++ LG W+ P R
Sbjct: 293 SR------------EEEIYKVLGMDWIPPELR 312
>gi|47228542|emb|CAG05362.1| unnamed protein product [Tetraodon nigroviridis]
Length = 451
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 101/222 (45%), Gaps = 37/222 (16%)
Query: 229 EDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKD 288
ED R ++ +A V++ LP + ++KGLP +G + ++ I +GK +++E ++
Sbjct: 25 EDGRGIAFRRAEAVLKALPRAVRKLTELKGLPCLG---EHSLRIIKASGKAAEVEATKQS 81
Query: 289 EKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED-SLTHSQRLGLKYFDDIKTRIP 347
E+ + + L ++G+G TA + G L L++ +L +Q+ GL++++D+ +
Sbjct: 82 ERYKALKLLTGIFGVGAKTADRWITMGIYNLQQLQSSGPTLNQAQQAGLEHYEDLNQPVT 141
Query: 348 RHEVEQMERLLQKAGEEVLPEVIILCGGSYR----------------------------- 378
R E + + ++++ VLP + G +R
Sbjct: 142 RAEADHIGEIVRRVVLCVLPGAQLTLIGGFRRYTSRAALDLINIADHLTAKICTDADGIV 201
Query: 379 ----RGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFL 416
RGK + D+D +I HP+ G L K V LK FL
Sbjct: 202 DILNRGKPTGHDVDFLITHPEEGREVGLLPKVVSLLKSQGFL 243
>gi|50293401|ref|XP_449112.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528425|emb|CAG62082.1| unnamed protein product [Candida glabrata]
Length = 568
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 114/274 (41%), Gaps = 36/274 (13%)
Query: 134 DGESSHR--KKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASASPD 191
D ES R K ++ + E ++ + DVE N S + +S ++ T L ++ S
Sbjct: 115 DSESQERDTKNVQFHSAGNEEAGSDDETDVEGNKESTGDMTDVS-DTATPQLQSSPLSKY 173
Query: 192 FSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE 251
D +L N G+L+ Y G+ RS SY A +EK P KI
Sbjct: 174 IKQEEDIDNQVLINA----------LGRLVKKYEVKGDQYRSRSYRLAKQAVEKYPHKIT 223
Query: 252 SADQV-KGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 310
S Q + L IG S+ IQ ++ TG L LE DE ++ F E +GIG A+K
Sbjct: 224 SGSQAQRQLSNIGSSIAKKIQLLLDTGTLPGLEDPATDEYESSLGYFSECYGIGVPMAKK 283
Query: 311 LYEKGHRTLDDLKNEDSLTHSQRL-------------GLKYFDDIKTRIPRHEVEQMERL 357
TL N + + RL G Y++D RIPR EV L
Sbjct: 284 WI-----TL----NISTFYRAVRLHPKLFISDWPILYGWTYYEDWSKRIPRDEVTAHFEL 334
Query: 358 LQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVI 391
+++ V + GSY RG GD+D++
Sbjct: 335 VKEEVRRVGNGCSVEMQGSYVRGARDTGDVDLMF 368
Score = 39.7 bits (91), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 12/71 (16%)
Query: 440 IAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFL 499
I +TGN NR LR+ A GY+L G+F K V + FD E+++F++L
Sbjct: 499 IHYTGNTDYNRWLRVRAMDMGYKLTQHGIF--------KDDVLLES---FD-ERKIFEYL 546
Query: 500 GFPWLEPHERN 510
P+L P +RN
Sbjct: 547 HVPYLNPVDRN 557
>gi|156848274|ref|XP_001647019.1| hypothetical protein Kpol_1050p18 [Vanderwaltozyma polyspora DSM
70294]
gi|156117702|gb|EDO19161.1| hypothetical protein Kpol_1050p18 [Vanderwaltozyma polyspora DSM
70294]
Length = 596
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 88/190 (46%), Gaps = 7/190 (3%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQV-KGLPGIGKSMQD 268
N I KL Y+ G+ R+ SY AI I+K I S Q K +P IG S+
Sbjct: 215 NDRIVNPLAKLARKYKVEGDTFRARSYNLAILSIDKYTLPITSGIQAQKEIPNIGPSIAK 274
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL----YEKGHRTLDDLKN 324
IQ I+ TG L LE + E+ ++ F G+G TA++ + L+ N
Sbjct: 275 KIQRILDTGTLPGLE--QASEQFDSLQYFSTCHGVGSETAKRWNSLKLDSFKDVLEKFPN 332
Query: 325 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 384
E ++ G Y++D + +IPR + ++++ + P+ + GS+ RG C
Sbjct: 333 EFAVEWPILFGWSYYEDWQKKIPRSVCAKYLQIVEDELFLLDPDFKVELQGSFNRGLPEC 392
Query: 385 GDLDVVIMHP 394
GDLD++ P
Sbjct: 393 GDLDLLFYKP 402
>gi|319790038|ref|YP_004151671.1| PHP domain protein [Thermovibrio ammonificans HB-1]
gi|317114540|gb|ADU97030.1| PHP domain protein [Thermovibrio ammonificans HB-1]
Length = 575
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 88/329 (26%), Positives = 146/329 (44%), Gaps = 48/329 (14%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYK-AIPVIEKLPFKIE---SADQVKGLPGIGKS 265
NK + +IF K +I +G++ Y+ A +I L IE ++ LPGIG+
Sbjct: 3 NKELAQIFEKWADILEFMGDNPYHVRAYRNAARLINDLSEDIEVLAREGKLSQLPGIGQR 62
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKN 324
+Q I E + TGK+ + E K + TI ++ G+GP T + LYE+ G R+++DLK
Sbjct: 63 LQAKILEFLRTGKIEEFEKL-KQQVPDTIFTLLDIPGVGPKTVKLLYEELGIRSIEDLKR 121
Query: 325 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQME----------------RLLQKAGEEVLPE 368
++ + L L F + + +E +E R++ E E
Sbjct: 122 --AIERGELLKLPGFGPKRVEKIKKGIELLEKSGGRILLGVAVFIADRIVNHLKEHSAVE 179
Query: 369 VIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVK--KLKEM--KFLREDLIFST 424
I +CG S RR K + GD+D++ K++ + +V +KE+ K ++ +
Sbjct: 180 RISVCG-STRRMKETVGDIDIL---ASGKNNLEIVEAFVNLPNVKEVLWKGPKKATVIVE 235
Query: 425 HSEEVYPR----DIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
E+V R D Y L +TG+ N LR + GY+L++ GLF G+
Sbjct: 236 EGEQVDLRVIEPDSYGAALQYFTGSKAHNIHLRTICLKMGYKLNEYGLFKGDKRIAGR-- 293
Query: 481 VRARTSLKFDTEKEVFDFLGFPWLEPHER 509
TE+E++ LG P R
Sbjct: 294 ----------TEEEIYSALGMDTPPPEIR 312
>gi|330506782|ref|YP_004383210.1| PHP domain/helix-hairpin-helix motif protein [Methanosaeta concilii
GP6]
gi|328927590|gb|AEB67392.1| PHP domain/helix-hairpin-helix motif protein [Methanosaeta concilii
GP6]
Length = 577
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 84/331 (25%), Positives = 141/331 (42%), Gaps = 50/331 (15%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESA---DQVKGLPGIGKS 265
N+ I I ++ + E+R + +Y +A IE L IE +++G+PG+GK+
Sbjct: 7 NREIAGILYQMAELLELHAENRFKIIAYSRAARAIESLTEDIEQVCRDGRLEGIPGVGKA 66
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRT-LDDLKN 324
+ + I+E + TG++ + D L ++ G+GP T L+EK T LD+L+
Sbjct: 67 IAEKIKEYLRTGRIQSHQDLLADTPQGLAELL-QISGLGPKTVFMLHEKLDITNLDELEK 125
Query: 325 ---EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCG------- 374
E + R+G+ +I I R+ ++ R+L E ++ E++ G
Sbjct: 126 AAREHRIRRLPRMGVVREKNILKSIERYR-KRSNRILYSTAESIVDEILTYLGGIEGLEH 184
Query: 375 ----GSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEVY 430
GSYRR K + GD+D++ + ++ +VK M + E L V
Sbjct: 185 ATAAGSYRRRKETVGDIDILATAARPEE---IVAAFVK----MPLVEEVLAKGPTKASVI 237
Query: 431 PRDI------------YAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGK 478
D Y L +TG+ N +R LA +GY L + L G
Sbjct: 238 MNDTIQVDLRIVEHRSYGTVLQYFTGSKEHNVSMRQLALDRGYSLSEYSLTRLANGQ--- 294
Query: 479 QGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
L FD E+EV+ LG ++ P R
Sbjct: 295 -------DLFFDQEEEVYQALGLQYIPPELR 318
>gi|355572672|ref|ZP_09043760.1| PHP domain protein [Methanolinea tarda NOBI-1]
gi|354824363|gb|EHF08615.1| PHP domain protein [Methanolinea tarda NOBI-1]
Length = 571
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 88/330 (26%), Positives = 147/330 (44%), Gaps = 47/330 (14%)
Query: 205 NPPDLNKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKL--PFKIESADQVKGLPG 261
NP N+ + E + I L E+ + +Y +A IE+L P S ++++ +PG
Sbjct: 9 NPEMSNREVAEKLSLMGEILEILDENPFKVRAYRRAAESIERLGVPVGNLSPEELEAVPG 68
Query: 262 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLD 320
IG ++ ++EI+ TG +LE + + + G+GP T + L++K G +++D
Sbjct: 69 IGTAIAKKVREIIATGTFHELEEARSSVPASLVEMLA-LDGVGPKTIKTLWKKLGIQSID 127
Query: 321 DLKNEDSLTHSQR----LGLK----YFDDIKT-RIPRHEVEQMERLLQKAGEE----VLP 367
DL+ + H R G + + + I+ R PR +M RL E V
Sbjct: 128 DLERA-ARGHRIRAVRGFGPRKEEAFLEAIENYRQPR---ARMTRLFADQVIEGIRGVFA 183
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMH--PDRKSHKGFLSKYV------KKLKEMKFLRED 419
E + GSYRR K++ GD+D+V + P S +++ V K K R D
Sbjct: 184 EGTFVVAGSYRRKKSTIGDIDIVTVDSPPSVNSRIRQIAEEVIDEGDKKTSFRFKKTRID 243
Query: 420 LIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQ 479
+ F R+ L+ TG+ N RLR +A +G +L++ G+ A G
Sbjct: 244 VRF-------IERNRCGAMLLYLTGSKAFNIRLREIALERGLKLNEYGIEDAGRGK---- 292
Query: 480 GVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
F E+E+F FLG ++ P R
Sbjct: 293 ------VHSFAREEEIFSFLGMDYIVPELR 316
>gi|320450381|ref|YP_004202477.1| DNA-dependent DNA polymerase subunit beta [Thermus scotoductus
SA-01]
gi|320150550|gb|ADW21928.1| DNA-dependent DNA polymerase beta chain [Thermus scotoductus SA-01]
Length = 575
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 99/337 (29%), Positives = 156/337 (46%), Gaps = 60/337 (17%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESA-----DQVKGLPGIG 263
N+ + +F ++ + LG++ R +YY+A + L IE + + LPGIG
Sbjct: 3 NQELARLFEEIGLMSEFLGDNPFRVRAYYQAARTLYDLDTPIEEVAKGGREALLALPGIG 62
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKV-RTISLFGEVWGIGPATAQKLY-EKGHRTLDD 321
+ + I E + TG++ K H E E+V + + EV G+GP TA++LY E G +L+
Sbjct: 63 PDLAEKILEFLKTGEIKK--HRELAERVPKGVLAVMEVPGVGPKTARQLYDELGIDSLEK 120
Query: 322 LKNEDSLTHSQRLGLKYFDDIKT---------------RIPRHEVEQMERLLQKAGEEVL 366
L+ ++L L LK F K R P V + R L A E L
Sbjct: 121 LR--EALDRGDLLRLKGFGQKKAERIREGLALVQVAGKRRPLGAVLSLARNLLAAIRE-L 177
Query: 367 PEV--IILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVK--KLKEMK-------- 414
P V LCG S RR K + GDLD ++ + + + +VK ++KE+
Sbjct: 178 PGVERAELCG-SARRYKDTVGDLDYLVAS---ERSEEVVRAFVKLPQVKEVYAQGKERAT 233
Query: 415 -FLREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATY 473
FL+ L V P + + GL TG+ + RLR LA+ KG +L + G+F
Sbjct: 234 VFLKNGLQVDLR---VVPPESWGSGLQYLTGSKEHSIRLRSLAQEKGLKLSEYGVF---- 286
Query: 474 GSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
GG++ L +TE+ V++ LG P++ P R
Sbjct: 287 -RGGER-------LAGETEEGVYEALGLPFIPPALRE 315
>gi|47221680|emb|CAG10152.1| unnamed protein product [Tetraodon nigroviridis]
Length = 407
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 100/229 (43%), Gaps = 30/229 (13%)
Query: 213 ITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKS------- 265
+ + F L Y + R ++ +A V++ LP + S + LP +G
Sbjct: 8 LQDAFEVLAECYEFNQMEGRCLAFRRAASVLKSLPRVLSSLEDTHHLPCLGDHAKAIIDL 67
Query: 266 ---------------MQDHIQ------EIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIG 304
M +H + E++ G+ ++ DE+ +T+ LF V+G+G
Sbjct: 68 RHPPSTLMEDLLADFMPEHSEDFKVAPELLQHGRAFDVQKVLSDERYQTLKLFTSVFGVG 127
Query: 305 PATAQKLYEKGHRTLDDLKNEDS--LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAG 362
P TA+K Y G R + + + S L H Q+ G +++DI + + E + +++ +
Sbjct: 128 PKTAEKWYRTGLRAFEHILADRSIHLNHMQQNGFLHYEDISRAVSKAEARALTKVIDEVV 187
Query: 363 EEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLK 411
+ P+ I+ G +RRGK D+D++ + + L +K L+
Sbjct: 188 HAITPDAIVALTGGFRRGKEFGHDVDIIFTTLEVGKEENLLLDVIKSLE 236
>gi|328954246|ref|YP_004371580.1| PHP domain-containing protein [Desulfobacca acetoxidans DSM 11109]
gi|328454570|gb|AEB10399.1| PHP domain protein [Desulfobacca acetoxidans DSM 11109]
Length = 577
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 91/333 (27%), Positives = 140/333 (42%), Gaps = 54/333 (16%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESA------DQVKGLPGIG 263
N I IF + G + ++Y KA +E L +E +K +PG+G
Sbjct: 3 NHEIARIFQVIAEYLEMEGVRFKPYAYQKAALTLENLKDSVEDIYNQGGLKGLKAIPGVG 62
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDL 322
+S+ I+E + TGK+ E F + + +L V G+GP A+ L+EK G L +L
Sbjct: 63 ESIAQKIEEYLNTGKIEYYEEFRRKLPIDLDALIA-VEGMGPKKAKMLFEKLGITNLTEL 121
Query: 323 KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILC--------- 373
E++ + LK F D + + +E +E + + G +L EV+ L
Sbjct: 122 --EEAARSHKIAPLKGFGD---KTEANIIEGIEFVKKSTGRFLLGEVLPLADRVLATLRA 176
Query: 374 ---------GGSYRRGKASCGDLD-VVIMHPDRKSHKGFLSK--YVK-----KLKEMKFL 416
GS RR K + GDLD + I K F+S+ VK + K L
Sbjct: 177 LPEVQRADVAGSLRRMKETIGDLDFLAISSQPEKVMDFFVSQPEVVKVYGRGQTKSSVRL 236
Query: 417 REDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSG 476
R+ + V P Y L ++G+ N LR +A K Y+L++ GLF
Sbjct: 237 RQGVDMDLR---VIPPGSYGAALQYFSGSKEHNIALRQIAIDKDYKLNEYGLFEGDRMIA 293
Query: 477 GKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
G TE+EV+ LG PW+ P R
Sbjct: 294 GA------------TEEEVYAKLGLPWIPPELR 314
>gi|221039776|dbj|BAH11651.1| unnamed protein product [Homo sapiens]
Length = 181
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 94/184 (51%), Gaps = 32/184 (17%)
Query: 353 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKG----FLSKYVK 408
QM+ ++ ++V E I GS+RRG S GD+DV++ HP S L + V+
Sbjct: 3 QMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVE 62
Query: 409 KLKEMKFLREDL------------IFSTHSEEVY----------PRDIYAFGLIAWTGND 446
+L+++ F+ + L + S + E+ Y P+D Y G++ +TG+D
Sbjct: 63 QLQKVHFITDTLSKGETKFMGVCQLPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSD 122
Query: 447 VLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEP 506
+ N+ +R A KG+ +++ + P G GV A L D+EK++FD++ + + EP
Sbjct: 123 IFNKNMRAHALEKGFTINEYTIRPL-----GVTGV-AGEPLPVDSEKDIFDYIQWKYREP 176
Query: 507 HERN 510
+R+
Sbjct: 177 KDRS 180
>gi|390559470|ref|ZP_10243802.1| PHP domain protein [Nitrolancetus hollandicus Lb]
gi|390173984|emb|CCF83096.1| PHP domain protein [Nitrolancetus hollandicus Lb]
Length = 594
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 141/324 (43%), Gaps = 37/324 (11%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIES---ADQVKGLPGIGKS 265
N + ++ + + GE R +Y +A I+ + ++S A +++ +PG+G S
Sbjct: 5 NHEVAQLLNGIAELLALKGETPFRIRAYTEAAQYIDTMTEDVDSLYQAGRLEDIPGVGAS 64
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKN 324
+ I E + TG S E + L EV GIGPA A L+ + G T+ L
Sbjct: 65 IATKIAEYLKTGHSSYYEQLRQQIPSSAAELL-EVPGIGPARAHLLFTRLGITTVRQLL- 122
Query: 325 EDSLTHSQRLGLKYFDDIKTRIPRHEV---EQMERLLQKAGEEVLPEVIILC-------- 373
+ + H R + + ++TRI R ++ +R+L A V EVI L
Sbjct: 123 QAAEAHQLRDLPGFGEQLETRIAREAARVTQRTQRMLLGAAVPVAEEVIQLLRDSSAVDA 182
Query: 374 ---GGSYRRGKASCGDLDVVIM--HPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE- 427
GS RR + + GD+D+++ P+ V+++ R ++ + +
Sbjct: 183 IDPAGSLRRMRETIGDIDILVASSRPETVVEAFTRLPIVQEVLAKGITRPSILTRANVQV 242
Query: 428 --EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRART 485
V D Y L +TG+ N LR L KG++L + GLF +QG R
Sbjct: 243 DLRVIAPDEYGAALQYFTGSKAHNIALRSLVIEKGWKLSEYGLF-------DQQGRR--- 292
Query: 486 SLKFDTEKEVFDFLGFPWLEPHER 509
+ TE+E+++ LG W+ P R
Sbjct: 293 -IAGRTEQEIYEALGMDWMPPEIR 315
>gi|89899639|ref|YP_522110.1| PHP-like protein [Rhodoferax ferrireducens T118]
gi|89344376|gb|ABD68579.1| PHP-like [Rhodoferax ferrireducens T118]
Length = 580
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 81/336 (24%), Positives = 150/336 (44%), Gaps = 55/336 (16%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESA----DQVKGLPG 261
P N ++ +F ++ ++ G + R +Y A ++ +L + + +++ LPG
Sbjct: 2 PITNADVVAVFSEIADLLEIEGANPFRVRAYRNAARMLGELGRSVRTMVDRPEELDALPG 61
Query: 262 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLD 320
IG + I E+VTTG + L+ K E I+ ++ G+GP + L+ E G TL
Sbjct: 62 IGPDLAGKIVEVVTTGSCALLQRLRK-ELPPVITELLKIPGLGPKRVRTLHRELGIETLA 120
Query: 321 DLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQK------AGEEVLPEVII--- 371
L+ +++ ++ + R +E RLLQ+ A E + + ++
Sbjct: 121 QLRQA-----AEQGRVQSVHGFGAKSERQILEATGRLLQQERRYKWADMEPVAQALLADL 175
Query: 372 ---------LCGGSYRRGKASCGDLDVVIM--HPDRKSHKGFLSKYVKKLKEMKFLREDL 420
+ GS RRG+ + GDLD+++ +P + S+ ++++ E R +
Sbjct: 176 HATPGVHRAVAAGSLRRGRETVGDLDLLVTAENPGTVMDRLTASEDIQRVLEQGVTRSSV 235
Query: 421 IFSTHSE----EVYPRDIYAFGLIAW---TGNDVLNRRLRLLAESKGYRLDDTGLFPATY 473
+ + + V P +FG AW TG+ N LR LA+ K +L++ GL+
Sbjct: 236 VLKSGLQVDLRAVAP---ASFG-AAWLYFTGSKAHNIALRKLAQDKDLKLNEYGLY---- 287
Query: 474 GSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
R + + DTE V+ LG P++EP R
Sbjct: 288 --------RGKQRIAGDTETAVYKALGLPFIEPELR 315
>gi|13541687|ref|NP_111375.1| family X DNA polymerase [Thermoplasma volcanium GSS1]
gi|14325087|dbj|BAB60012.1| DNA-dependent DNA polymerase family X [Thermoplasma volcanium GSS1]
Length = 516
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 88/333 (26%), Positives = 148/333 (44%), Gaps = 48/333 (14%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF---SYYKAIPVIEKLPFKIESA------DQVKGL 259
+N++I IF ++ + A GE + F +Y KA I + +E+ D + +
Sbjct: 2 INQDIARIFTEIAYLLEAAGEQKSQFEANAYLKASRAISSMQEDLETIYEKGGKDALLSI 61
Query: 260 PGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRT 318
PGIGK + D I E + +G + K E +K + ISL ++ G+GP LY+ G
Sbjct: 62 PGIGKGIADKIVEYINSGSIQKYEDLKKKYPIDFISLM-KIEGLGPKKLAVLYQALGITN 120
Query: 319 LDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERL-----LQKAGEEVLP------ 367
+++L+N L H R G+ F + +E ER+ + KA E L
Sbjct: 121 VEELRNA-ILNHKVR-GIPGFGEKSENQLLKNIEMAERVSERIPIWKAYPEALRIKNYLE 178
Query: 368 ----EVIILCGGSYRRGKASCGDLDVVIM--HPDRKSHK-----GFLSKYVKKLKEMKFL 416
+I+ GS RR K + GD+D++ +P+ K G S K K+
Sbjct: 179 STGYALIVEIAGSTRRMKETIGDIDILAASEYPNALMDKFVEMDGVSSIIAKGDKKSTVS 238
Query: 417 REDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSG 476
+ I +T + ++ + + +TG+ N +LR LA KG +L++ GLF SG
Sbjct: 239 LK--IGTTCDLRIVSKESFGAAMQYFTGSKDHNIKLRRLAIGKGMKLNEYGLF-----SG 291
Query: 477 GKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
K V E++V++ L ++ P R
Sbjct: 292 DKNIVSGM------PEEKVYETLDLAYIPPELR 318
>gi|441497932|ref|ZP_20980137.1| DNA polymerase X family [Fulvivirga imtechensis AK7]
gi|441438269|gb|ELR71608.1| DNA polymerase X family [Fulvivirga imtechensis AK7]
Length = 581
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 83/333 (24%), Positives = 151/333 (45%), Gaps = 46/333 (13%)
Query: 208 DLNKNITEIFGKLINIYRALGEDR--RSFSYYKAIPVIEKLPFKIE---SADQVKGLPGI 262
D NK + I L ++YR LG + ++ +Y KA I+ LP I V+ +PG+
Sbjct: 3 DHNKQLAAILHDLGSMYRYLGGENLFKAIAYMKASQAIKGLPGDISVYLKDGTVRDIPGV 62
Query: 263 GKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH------ 316
G+S++ I+E +TG +++ E+ K + L ++ G GP + ++L++ H
Sbjct: 63 GESLEKDIREFTSTGTVTRFENLIKIVPHGLMELI-DISGFGPQSLKRLHQDLHIETKEE 121
Query: 317 --RTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGE---------EV 365
+ L+D + + + G K +++ + H+ + LL A E +
Sbjct: 122 VVKALEDGR----IGQLKGFGPKKVENMLRGLKLHKHVEERMLLCDALEVSEKLLTLLKA 177
Query: 366 LPEVI-ILCGGSYRRGKASCGDLDVV--IMHPDRKSHKGFL--SKYVKKLKEMKFLREDL 420
LPEV + GS RR K + GDLD++ + DRK SK +K+ R +
Sbjct: 178 LPEVKRVELAGSLRRKKETIGDLDILAAVNIKDRKKVIAVFTDSKLAQKVLAKGDTRVSI 237
Query: 421 IFSTHSEEVYPRDI----YAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSG 476
I ++++ R + + L +TG+ N LR +A KGY++ + G+F
Sbjct: 238 IMKENAKQADLRMVDESEWGAALQYFTGSKDHNIHLRGIARDKGYKISEYGIF------- 290
Query: 477 GKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ + TE+E++ LG ++ P R
Sbjct: 291 ---NIHNHKRIAGKTEEELYSQLGMQYIPPEMR 320
>gi|443926823|gb|ELU45383.1| fingers domain of DNA polymerase lambda domain-containing protein
[Rhizoctonia solani AG-1 IA]
Length = 473
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 8/149 (5%)
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN--EDS 327
I+E + TG +++ E+ + +SL +V G+G A A++ Y G R+L+DL+
Sbjct: 207 IEEYLKTGNIAEARKAAASERFQVLSLLTQVHGVGAAKAREHYAAGRRSLEDLRKFYRAK 266
Query: 328 LTHSQRLG----LKYFDDIKTRIPRHEVEQMER-LLQKAGEEVLPEVIILCGGSYRRGKA 382
+ LG L+ D++ T IPR EVE + + + L +CGG YRRGK
Sbjct: 267 VEAGTHLGIAAALELHDELNTTIPREEVEAIANGVFGELSAVQLGCEYTICGG-YRRGKP 325
Query: 383 SCGDLDVVIMHPDRKSHKGFLSKYVKKLK 411
D+D+V HP+ + + +K V +LK
Sbjct: 326 YSNDIDIVFTHPEVGTERHLCTKLVDRLK 354
>gi|407395990|gb|EKF27317.1| mitochondrial DNA polymerase beta-PAK, putative [Trypanosoma cruzi
marinkellei]
Length = 627
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 89/376 (23%), Positives = 147/376 (39%), Gaps = 114/376 (30%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPF------------------ 248
PD + + +IF +L I AL E ++ SY A+ +++ F
Sbjct: 98 PDHREKVLQIFQRLAEINNALLERYKAQSYQIAVDNLKRDDFIFLHLPPNILPPGVDDAK 157
Query: 249 KIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATA 308
+ E + V P +G+ ++ I EI++ G L++L + +R I +V G+GP TA
Sbjct: 158 RTEQLNAVSATPVVGEKLKAKIVEILSMGDLAELHSLQAKPIIRAIQELTQVHGVGPRTA 217
Query: 309 QKLYEK-GHRTLDDLKN--------------------------------------EDS-- 327
Y+K G +++ +L+ +DS
Sbjct: 218 VTFYKKYGIKSVAELQQRVKDHETEKGTGDGDKDGSKCGNSGGAKKGSKKNSAGGDDSVL 277
Query: 328 -LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE--VIILCGGSYRRGKASC 384
LT +QRLGLKY DI RIP EV E L+ + L + + +C GSYRR +
Sbjct: 278 HLTEAQRLGLKYHRDIMQRIPYEEVRLHEAFLKLRLRKYLGKGYELSIC-GSYRRRLPTS 336
Query: 385 GDLDVVIMHPDR---------KSHKG--------------FLSKYVKKLKEMKFLREDLI 421
GD+DV+I KS KG L+ +V+ LK +++ L
Sbjct: 337 GDIDVLITRKTNGKGPAIRRTKSKKGGHHHTDEQVLAPQEVLAAFVEALKRERYIEATLA 396
Query: 422 ------------------FSTHSEEVYPR----------DIYAFGLIAWTGNDVLNRRLR 453
S ++YP + + L+ +TG+ N +R
Sbjct: 397 QGATKFMGVSRLRSYNYNAGATSPKLYPARRLDIRFVEPECFPAALLYFTGSKNFNVVMR 456
Query: 454 LLAESKGYRLDDTGLF 469
A + + L++ GLF
Sbjct: 457 AEAIKQNFVLNEYGLF 472
>gi|410670506|ref|YP_006922877.1| PHP domain-containing protein [Methanolobus psychrophilus R15]
gi|409169634|gb|AFV23509.1| PHP domain-containing protein [Methanolobus psychrophilus R15]
Length = 586
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 91/348 (26%), Positives = 156/348 (44%), Gaps = 69/348 (19%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESADQ---VKGLPGIGKS 265
N I +I ++ + GED + +Y KA I+KL I+S Q + +PG+GK+
Sbjct: 3 NAEIADILSRMSRLLEFKGEDPFKIMAYEKAARSIKKLEMDIDSIHQEGHLSDVPGVGKA 62
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKN 324
++D I+E++TTG E + I + ++ GIGP TA+ LYE+ G ++ +L
Sbjct: 63 IEDKIKELLTTGTFEAYERILAEIPSGIIEIM-DISGIGPKTAKILYERLGIESIGELIK 121
Query: 325 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEV-------LPEVI------- 370
+ H R R+PR +Q ER+L+ A V P +
Sbjct: 122 A-AEEHRIR-----------RLPRMGPKQEERILKAARNRVQSSDFRRTPLAVATAIARQ 169
Query: 371 -------------ILCGGSYRRGKASCGDLDVVIMHPD-RKSHKGFLSKYVKKLKEMKFL 416
++ GS RR K + G++D+V + + K+ F+ +++K + +
Sbjct: 170 ITEELSASPYIDTVVPAGSLRRRKETVGNIDLVALSDEPEKAVDAFM--HLEKTAPVPEV 227
Query: 417 REDLIFSTHSEEVYPRDI----------YAFGLIAW-TGNDVLNRRLRLLAESKGYRLDD 465
+ STH+ V+ I Y LI + TG+ N L+ +A +KGY +
Sbjct: 228 LDIYEGSTHAAIVHESGIRVDLYVGSRGYCGSLIQYLTGSKEHNIHLQEVARAKGYTISK 287
Query: 466 TGLFPATYGSGGK----QGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+G S GK +G R + +F E E+++ LG +L+P R
Sbjct: 288 SGSI-----SKGKPVETEGPRNKAR-EFSNEAELYESLGLGYLQPELR 329
>gi|217967981|ref|YP_002353487.1| PHP domain-containing protein [Dictyoglomus turgidum DSM 6724]
gi|217337080|gb|ACK42873.1| PHP domain protein [Dictyoglomus turgidum DSM 6724]
Length = 580
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 87/335 (25%), Positives = 146/335 (43%), Gaps = 55/335 (16%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYK-AIPVIEKLPFKIE---SADQVKGLPGIGKS 265
NK + +I ++ + GE++ + Y+ A IE LP IE ++ + GIG+S
Sbjct: 3 NKEVAQILDEIAALLEIKGENKYKIAAYQEAARRIENLPEDIERLFKQGKLYQIKGIGES 62
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLK- 323
+ I+E +TTGK+S LE K+ + L ++ GIGP A +LY E G + +D L+
Sbjct: 63 IGQKIKEYLTTGKVSYLEELRKEIPPEILELL-KIPGIGPKLAYRLYAELGIKDIDSLEK 121
Query: 324 --NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQM--ERLLQKAGEEVLPEVI--------- 370
E + RLG K +I I + +Q ER+ + E++
Sbjct: 122 AAKEGKIRVLPRLGPKVEQNILEAIKEYREKQTVPERIPLGVALPLTEEIVNYLSQYPFI 181
Query: 371 --ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE- 427
I+ GS RR K + GD+D++I D + + + LK + L+ L
Sbjct: 182 ENIVPAGSLRRRKETIGDIDILITTSD-------MDRVNQVLKNLPILKNILAAGPTKTS 234
Query: 428 -----------EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSG 476
V + + L +TG+ N +LR LA KG ++++ G+F
Sbjct: 235 IIVEPGIQVDFRVVEKSSFGAALQYFTGSKQHNIKLRELAIKKGLKINEYGVF------- 287
Query: 477 GKQGVRARTSLKFDTEKE--VFDFLGFPWLEPHER 509
R + K EKE +++ LG ++ P R
Sbjct: 288 -----RISDNKKIGGEKEEDIYEILGLQYIPPELR 317
>gi|395645114|ref|ZP_10432974.1| PHP domain protein [Methanofollis liminatans DSM 4140]
gi|395441854|gb|EJG06611.1| PHP domain protein [Methanofollis liminatans DSM 4140]
Length = 561
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 87/320 (27%), Positives = 137/320 (42%), Gaps = 38/320 (11%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKL--PFKIESADQVKGLPGIGKSM 266
N+ + + G++ + GE+ + +Y +A I+ L P S + ++ +PG+G+++
Sbjct: 5 NREVARLLGEIGALLEIQGENPFKIRAYTRAAEQIDHLAEPISSLSTEDLEAIPGVGEAI 64
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE----KGHRTLDDL 322
IQ+I+ G ++LE I L ++ G+GP T +KL+ G L+
Sbjct: 65 AGKIQDILNAGTCAELERLRAATPPGLIRLL-DLNGVGPKTVRKLWTGLGVDGIEALEAA 123
Query: 323 KNEDSLTHSQRLGLKYFDDIKTRI--PRHEVEQMERLLQKAGEEVLPEVI---ILCGGSY 377
+ + G K DDI I R +M R + L I GS
Sbjct: 124 ARSRRIRALKGFGAKKEDDILKAIAEAREGAGRMNRAEAERLAAALTAAIPGDSWVAGSL 183
Query: 378 RRGKASCGDLDVVIMHPDRKSHKGF--LSKYVKKLKEMKF------LREDLIFSTHSEEV 429
RRG+++ GD+D+V P R++ ++ V E K R D+ F+
Sbjct: 184 RRGRSTIGDIDIVTTAPPRETSLALRRIADAVIDEGERKISVTVGGRRADIRFAD----- 238
Query: 430 YPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKF 489
P I A LI TG+ N RLR +A K RL++ GL GSG Q F
Sbjct: 239 -PGSIGAM-LIYLTGSKAFNIRLREIAGRKEMRLNEYGL--TDRGSGNLQ--------IF 286
Query: 490 DTEKEVFDFLGFPWLEPHER 509
TE+ VF LG + P R
Sbjct: 287 PTEEGVFSALGMSQVPPELR 306
>gi|148263726|ref|YP_001230432.1| phosphotransferase domain-containing protein [Geobacter
uraniireducens Rf4]
gi|146397226|gb|ABQ25859.1| PHP C-terminal domain protein [Geobacter uraniireducens Rf4]
Length = 577
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 84/323 (26%), Positives = 153/323 (47%), Gaps = 35/323 (10%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIE--SADQVKGLPGIGKSM 266
N+ I IF ++ +I G++ +Y +A IE L +E S D++ +PGIG+ +
Sbjct: 3 NQEIARIFSEMADILEIKGDNPFKIRAYRRAALNIEGLSRSVEDLSRDELLEIPGIGEEL 62
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLDDLK-- 323
I+E + TG + + + + +SL V G+GP TA++++E+ H ++DDL+
Sbjct: 63 AAKIEEYIGTGAIHAHDKLKGEIPSGLLSLLA-VPGLGPKTARQIFEQRHIASIDDLERA 121
Query: 324 -NEDSLTHSQRLGLKYFDDIKTRIPR----HEVEQMERLLQKAGEEVLPEV-------II 371
E L + K ++I I HE + R+L A +++ E+ I
Sbjct: 122 AREHKLAGIPGIQKKTEENILKGIATVQQGHERRPLGRVLPLA-LDLVEELRKRARFGAI 180
Query: 372 LCGGSYRRGKASCGDLDVVIMHPD-RKSHKGFLS-KYVKKLKEMKFLREDLIFSTHSE-- 427
GS RR K +C D+D+V P ++ K F++ V+++ R ++ S +
Sbjct: 181 EIAGSIRRRKETCKDIDIVATSPAPEEAMKAFITLPAVEQIIMHGPTRSSVVISDGLQVD 240
Query: 428 -EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTS 486
V + + L TG+ N RLR +A +G ++++ G+F ++ AR
Sbjct: 241 LRVVAEESFGAALAYLTGSKGHNVRLRDMAVKQGLKINEYGIF--------REKDEAR-- 290
Query: 487 LKFDTEKEVFDFLGFPWLEPHER 509
L E++V+ LG P++ P R
Sbjct: 291 LGGAKEEDVYRLLGLPFIPPEMR 313
>gi|29825708|gb|AAO92254.1| terminal deoxynucleotidyl transferase isoform 2 [Ambystoma
mexicanum]
Length = 453
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 88/163 (53%), Gaps = 3/163 (1%)
Query: 272 EIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHS 331
+++ G+ SK+ DE R++ LF ++G+G TA+K + G RTL+++K+ ++L S
Sbjct: 166 DLIEDGESSKVSEVLNDEVYRSLKLFTTIFGVGLRTAEKWHRLGIRTLEEIKSNENLKFS 225
Query: 332 --QRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
Q GL++++DI + + E + + +++ A LP+ ++ G +RRG + D+D+
Sbjct: 226 KMQIAGLQHYEDILGGVRKAEADAVAMVVRDAVWTFLPDAVVTLTGGFRRGNKTGHDVDM 285
Query: 390 VIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIF-STHSEEVYP 431
+I P + K L K + K+ L I ST E+ P
Sbjct: 286 LITSPIQGKEKELLHKVINLWKKQDLLLCHTIHESTMDEDNLP 328
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 18/98 (18%)
Query: 414 KFLREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPAT 472
K +R DL+F P + YAF L+ WTG+ R LR A K +D+ L+ T
Sbjct: 372 KAIRVDLVFC-------PFEQYAFALLGWTGSRQFERDLRRYASHEKKMMIDNHALYDKT 424
Query: 473 YGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
R +K ++E+E+F LG +++P ERN
Sbjct: 425 ----------KRVFVKCESEEEIFGHLGLEYIDPVERN 452
>gi|260837479|ref|XP_002613731.1| hypothetical protein BRAFLDRAFT_123875 [Branchiostoma floridae]
gi|229299120|gb|EEN69740.1| hypothetical protein BRAFLDRAFT_123875 [Branchiostoma floridae]
Length = 186
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 96/196 (48%), Gaps = 35/196 (17%)
Query: 319 LDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVII-LCGGS 376
L DL KN L H Q+LGLKYF+D + RIPR E+ +M+ E+L +V+ L
Sbjct: 19 LTDLRKNPGKLNHHQQLGLKYFEDFEKRIPREEMLEMQ-------PELLKQVVHHLEKSK 71
Query: 377 YRRGKASCGDLDV--VIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEVYPRDI 434
+ S GD V P K K E F R D+ + P D
Sbjct: 72 FVVDTISLGDTKFMGVCRLPAGKGSK-----------ERTFRRIDI-------RLLPNDQ 113
Query: 435 YAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKE 494
Y G++ +TG+DV N+++R A +G+ L++ + P GS G G +L +E++
Sbjct: 114 YYCGVLYFTGSDVFNKKMRAHALEQGFTLNEYTIRPL--GSTGVPG----EALPVSSEED 167
Query: 495 VFDFLGFPWLEPHERN 510
VFD +G +L+P +R+
Sbjct: 168 VFDIIGMKYLKPSQRS 183
>gi|152991030|ref|YP_001356752.1| family X DNA polymerase IV [Nitratiruptor sp. SB155-2]
gi|151422891|dbj|BAF70395.1| DNA polymerase IV, family X [Nitratiruptor sp. SB155-2]
Length = 571
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 88/329 (26%), Positives = 142/329 (43%), Gaps = 48/329 (14%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIES----ADQVKGLPGIGK 264
N I +IF + ++ GE+ + +Y A +E + +E + LPGIG
Sbjct: 5 NSEIAKIFNEYADLLEIKGENPFKVRAYRNAARTVENIGKSLEELVNEGYDLTKLPGIGT 64
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLDDLK 323
+ +I+EIV TGK SKLE K+E T+ + G+GP + LYEK H ++++DL+
Sbjct: 65 DLSLYIKEIVKTGKFSKLEQI-KEEIPPTLVEMLSIEGLGPKRIKTLYEKLHIQSMEDLR 123
Query: 324 NEDSLTHSQRL-------------GLKYFDDIKTRIPRHEV-EQMERLLQKAGEEVLPEV 369
++L G+K R E E ++ LL+ + L +
Sbjct: 124 RAAESGEIEKLPGFGPTLVQKILKGVKLAKKAGQRFKWSEAKEYVDDLLEYLHQIELTHL 183
Query: 370 IILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEM---------KFLREDL 420
+ GS+RR K + GDLD++ D KY K+KE+ L DL
Sbjct: 184 EV--AGSFRRKKETVGDLDILATAKDFSEVIRHFIKY-PKIKEVVSAGSTRSTVILNNDL 240
Query: 421 IFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
S E + Y L +TG+ N +R +A G ++++ G+F GK
Sbjct: 241 QVDLRSVE---DESYGSALHYFTGSKAHNIEVRKIAIELGLKVNEYGVFKGNERIAGK-- 295
Query: 481 VRARTSLKFDTEKEVFDFLGFPWLEPHER 509
TE+EV+ +G ++EP R
Sbjct: 296 ----------TEEEVYQAVGLCYIEPELR 314
>gi|152992587|ref|YP_001358308.1| family X DNA polymerase IV [Sulfurovum sp. NBC37-1]
gi|151424448|dbj|BAF71951.1| DNA polymerase IV, family X [Sulfurovum sp. NBC37-1]
Length = 571
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 75/343 (21%), Positives = 142/343 (41%), Gaps = 75/343 (21%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKL----PFKIESADQVKGLPGIGK 264
N I IF ++ ++ GED R+ +Y A IE L +E+ + + +P IG+
Sbjct: 5 NAEIASIFTQIADLLEIRGEDPFRTRAYRNAARTIENLGKDLSKMVEAGEDISKIPTIGE 64
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN 324
+ + I+EIV TG+L+KLE+ + + + ++ GIGP A+ LY
Sbjct: 65 RIANKIREIVQTGRLAKLEYLKHSFPPHLLDIL-KIEGIGPKRAKILY------------ 111
Query: 325 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI-------------- 370
Q L + + ++ H++ Q++ +K +++L +
Sbjct: 112 -------QELNIGSLEALRKAAEAHKISQLKGFSEKMEQKILKGTMLAKKEGKRFLYSVA 164
Query: 371 -------------------ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY--VKK 409
+ GS+RR K + GDLD++ D + Y +K+
Sbjct: 165 EPHAQALEAYLKNFSGAEQVTVAGSFRRRKETVGDLDILATSKDPAKLIDYFVNYPGIKE 224
Query: 410 LKEMKFLREDLIFSTHSE---EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDT 466
+ R +I ++ + + Y L +TG+ N +R++A G ++++
Sbjct: 225 VVSHGDTRSTVILNSDLQVDLRCVKAESYGAALHYFTGSKSHNIAVRIMARDMGMKVNEY 284
Query: 467 GLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
GLF K G R + TE E+++ +G ++EP R
Sbjct: 285 GLF--------KNGKRIAGA----TEAEMYEGVGLRYIEPELR 315
>gi|299740693|ref|XP_001833920.2| DNA polymerase lambda [Coprinopsis cinerea okayama7#130]
gi|298404368|gb|EAU87950.2| DNA polymerase lambda [Coprinopsis cinerea okayama7#130]
Length = 1047
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 99/226 (43%), Gaps = 56/226 (24%)
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 323
K ++ I EI+ TGKL ++E +E+ V +LF ++G+G +TA K Y G RTLDD++
Sbjct: 628 KQVKFAIVEILETGKLRRIE-YERTGDVVAAALFQGIYGVGRSTAYKWYNAGCRTLDDIR 686
Query: 324 NEDS---LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAG-----------------E 363
L+ Q +GLKY+DDI +R+PR E + + +++ G +
Sbjct: 687 QGKGGVKLSAVQEIGLKYYDDINSRMPREEAKAIYDIIKPIGVLGRLIQELHAVGVLTED 746
Query: 364 EVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFS 423
LPE I G YR C +V P+ K + + FL
Sbjct: 747 LALPEEIDDLEGVYR---GLCRLPNV----PNSKRRR------------IDFL------- 780
Query: 424 THSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLF 469
P LI +T NR +RL A GY L+ GLF
Sbjct: 781 -----TVPYHSRGAALIYYT----FNRAMRLKANVMGYSLNQRGLF 817
>gi|392585337|gb|EIW74677.1| Nucleotidyltransferase [Coniophora puteana RWD-64-598 SS2]
Length = 526
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 81/163 (49%), Gaps = 7/163 (4%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
++ AI I+ L + IESA Q++ L G+G + + + + K S + ++ I
Sbjct: 17 AFKNAIRAIQSLDYPIESAQQIRSLKGVGSGIVKRVDDYLNQHKASPSSQSKAAARL-II 75
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNED---SLTHSQRLGLKYFDDIKTRIPRHEV 351
+ +V G+GP A+ LY+ G +L + L +QR L Y + + +PR E
Sbjct: 76 NELQQVPGVGPTMAKSLYDAGCTSLVQMHQPQYSAMLKPAQRACLPYVSHLTSPVPRAES 135
Query: 352 EQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
E + +++ + E ++ GSYRRG + D+D+++ HP
Sbjct: 136 EAVVDFVRR---HIPREFEVVVAGSYRRGAPASSDIDILLFHP 175
>gi|449018861|dbj|BAM82263.1| similar to DNA polymerase lambda [Cyanidioschyzon merolae strain
10D]
Length = 715
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 92/200 (46%), Gaps = 30/200 (15%)
Query: 278 KLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQ-RLGL 336
L +L F + + ++LF VW A + Y G +TL+++ + LT + +LG+
Sbjct: 272 NLLELRTFRDESAAQALTLFHCVWHAKRIRAMQWYHAGCKTLEEVASRCRLTDKRFQLGI 331
Query: 337 KYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVI----- 391
Y+DD + +P EV + + A E+ ++ ++ G+ RR CGD+D+++
Sbjct: 332 LYYDDFRLLVPYGEVAAITSIFASASTEIDADLSVIPVGALRRNYQECGDVDLIVTGEPE 391
Query: 392 -MHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNR 450
+HPD + + G L +K L+E F+ ++ + +V +
Sbjct: 392 TLHPDGERY-GSLKALIKLLRERHFITDEAV----------------------SIEVAMQ 428
Query: 451 RLRLLAESKGYRLDDTGLFP 470
RL+ + ES+ Y GL P
Sbjct: 429 RLQRIRESEAYMAAHMGLLP 448
>gi|444319590|ref|XP_004180452.1| hypothetical protein TBLA_0D04370 [Tetrapisispora blattae CBS 6284]
gi|387513494|emb|CCH60933.1| hypothetical protein TBLA_0D04370 [Tetrapisispora blattae CBS 6284]
Length = 613
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 95/186 (51%), Gaps = 7/186 (3%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVK-GLPGIGKSMQD 268
N+ + + KL I+ G++ RS Y A + K P KI+SA + + +P IG S+
Sbjct: 225 NELLIKTLDKLSKIHTIRGDEFRSRGYKLAKISVSKYPHKIKSAKEAQEKIPHIGASIAK 284
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDD-LKNEDS 327
I+ ++ TGKL LE K E + F +GIGP TA+ +L++ LK
Sbjct: 285 KIETLLKTGKLPGLEIASKLESRK--EYFSSCYGIGPVTAENWDSLQINSLNEALKRFPK 342
Query: 328 LTH---SQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 384
+ S G KY++D +IPR E + +++++ + + + GS+RR +A C
Sbjct: 343 IFQHDWSILFGWKYYEDWNKKIPRSECVKHMQIIKEELKLLDDSIECEIQGSFRRNRALC 402
Query: 385 GDLDVV 390
GD+D++
Sbjct: 403 GDIDIL 408
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 22/96 (22%)
Query: 424 THSEEVYPRDIYAFGLIAW----------TGNDVLNRRLRLLAESKGYRLDDTGLFPATY 473
+H+ E YP F + W TG+ NR +R +A SKG +L GL+
Sbjct: 525 SHALEEYPCRRIDFFICKWSEIGASKLHYTGSGEFNREVRKIAISKGMKLTQHGLY---- 580
Query: 474 GSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ L+ EK +FD L P++EP +R
Sbjct: 581 --------QNDILLESFNEKRIFDLLDIPFIEPPDR 608
>gi|167521203|ref|XP_001744940.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776554|gb|EDQ90173.1| predicted protein [Monosiga brevicollis MX1]
Length = 503
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/338 (18%), Positives = 126/338 (37%), Gaps = 82/338 (24%)
Query: 236 YYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTIS 295
Y +A + +PF+++S DQ+ LP + ++ + +Q ++ G L+ + + +
Sbjct: 184 YRRAAMALRAIPFEVQSLDQLTNLPLLNRAAHEAVQWVLDHGTLAGFPRLYHESDLDALR 243
Query: 296 LFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRL---------GLKYFDDIKTRI 346
+WG+G A + + G R+ + + H +L + + D+ I
Sbjct: 244 DLRRLWGVGVRLAWQFLQHGWRSAEAVVKA---VHEGKLKPANAQLEACCRDWTDLCLPI 300
Query: 347 PRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMH------------- 393
PR ++ + + + P + G YRRG + C D+D++I
Sbjct: 301 PRERIDALRVWILGLVQAADPGARVTVTGGYRRGNSECHDVDLIIAASAMAPGALLQRVL 360
Query: 394 ------------------------------------PDRKSHKGF--LSKYVKKLKEMKF 415
P ++SH F L + + + E +
Sbjct: 361 ADVRQAGCLVYAQDGAGPAAAEAHQSLQRKLSSRALPLQRSHSTFDDLPRALCIICEPET 420
Query: 416 ---LREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPAT 472
R DL+ ++E F ++ WTGN + NR +R A++ G+ L GL+
Sbjct: 421 KTKRRVDLVLCAAAQE-------PFAVLGWTGNRMYNREIRRWADAHGFHLTAAGLWDLE 473
Query: 473 YGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
G + ++ + LG P L P +R+
Sbjct: 474 QGG---------VFVPAESPTAIQRLLGLPTLSPEQRH 502
>gi|395850044|ref|XP_003797611.1| PREDICTED: DNA-directed DNA/RNA polymerase mu isoform 2 [Otolemur
garnettii]
Length = 454
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 103/224 (45%), Gaps = 23/224 (10%)
Query: 132 SSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEA-PNSPMSSESLTNTLSTASASP 190
+ E +H ++S E+ +Q T A SE P + + LT +L+ P
Sbjct: 61 ACSSEVTHIVMEQTSAEEAVCWQEHRA----TAAPSECTPATLLDISWLTESLAAGQPVP 116
Query: 191 DFSSHHI-------TDPSLLYNPPDLNKNITEIFGKLINIYRAL----------GEDRRS 233
S H + PS ++ P + T + I++ AL G + S
Sbjct: 117 MESRHRLEVAEPRKAPPSSIWMPAYACQRPTPLTHHNISLSEALETLAEAAGFEGREGHS 176
Query: 234 FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRT 293
++ +A V+ LP + + Q++GLP G+ +QE++ G ++E E+ +T
Sbjct: 177 LTFLRAASVLRALPRPVVALTQLRGLPHFGEHSFRVVQELLEHGVCEEVERVRHSERFQT 236
Query: 294 ISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-LTHSQRLGL 336
+ LF +++G+G TA + Y++G RTLDDL+ + LT Q+ L
Sbjct: 237 MKLFTQIFGVGVRTADRWYQEGLRTLDDLREQPQRLTQQQKAVL 280
Score = 42.7 bits (99), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 18/98 (18%)
Query: 414 KFLREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLA-ESKGYRLDDTGLFPAT 472
K +R DL+ V P + F L+ WTG+ + R LR + + KG L+ GLF
Sbjct: 373 KAVRVDLV-------VAPISQFPFALLGWTGSKLFQRELRRFSRKEKGLCLNSHGLF--- 422
Query: 473 YGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
T +E+++F LG +L P +RN
Sbjct: 423 -------NPEQNTVFHVASEEDIFRHLGLEYLPPEQRN 453
>gi|294495750|ref|YP_003542243.1| PHP domain protein [Methanohalophilus mahii DSM 5219]
gi|292666749|gb|ADE36598.1| PHP domain protein [Methanohalophilus mahii DSM 5219]
Length = 570
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 82/327 (25%), Positives = 145/327 (44%), Gaps = 38/327 (11%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKG------LPGI 262
+N++I ++ ++ +I+ + + +Y KA I + I KG +PG+
Sbjct: 2 INRDIAKLLYEIADIFEYKEVEWKPRAYRKAARKIGDMREDISGLYSKKGREGLENIPGV 61
Query: 263 GKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDD 321
G + DHI E + G + + E K E R S ++ G+GP A+KL E +++ D
Sbjct: 62 GSRIADHIVEYIEAGSVREFEKIRK-ETPRGASNIIKIRGLGPKKAKKLMDELDIQSIPD 120
Query: 322 LK---NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI-------- 370
LK N + + G K +++ I ++E + ER+L ++ E+I
Sbjct: 121 LKEAINNQEIRKLEGFGKKTEENLDKAISQYE-KSHERMLLPKATDLAEEIISYMEENTT 179
Query: 371 ---ILCGGSYRRGKASCGDLDVVIMHPD-RKSHKGFLS-KYVKKLKEMKFLREDLIFSTH 425
I GS RR K + GD+D++++ D + F++ + V +++ R +I
Sbjct: 180 LKKIDYAGSLRRMKETIGDIDILVVASDPEEVMDAFVNFENVDEVESRGKTRSTIILQNG 239
Query: 426 SE---EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVR 482
V P Y L +TG+ N LR LA SKGY+L + GLF
Sbjct: 240 GHIDLRVVPESSYGAALQYFTGSKDHNIELRNLALSKGYKLSEYGLFKED---------- 289
Query: 483 ARTSLKFDTEKEVFDFLGFPWLEPHER 509
++ L+ E ++ LG ++ P R
Sbjct: 290 SKKKLEGKKEDRIYGKLGLSFIPPELR 316
>gi|398010899|ref|XP_003858646.1| mitochondrial DNA polymerase beta-PAK, putative [Leishmania donovani]
gi|322496855|emb|CBZ31925.1| mitochondrial DNA polymerase beta-PAK, putative [Leishmania donovani]
Length = 1480
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 121/302 (40%), Gaps = 90/302 (29%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAI-------------------------- 240
PD + + +IF +L I ALGE +S Y + +
Sbjct: 955 PDYRERVVQIFEQLTQINSALGERFKSQLYGRTVERFKRGDKVFQLLPPNLLPLPEEDPK 1014
Query: 241 --PVIEKLPFKIESADQVKG--------------------LPGIGKSMQDHIQEIVTTGK 278
+IE L +K + A Q K +PG+G +++ + EI+ TG
Sbjct: 1015 KKAIIEAL-YKDDPAAQKKRVEEVERNRAKRSLVLSSDNLIPGLGTKLREKVIEILVTGG 1073
Query: 279 LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLD------------DLKNE 325
L +L E +R I +V G+GP TA ++K G T+ D+ N+
Sbjct: 1074 LEELHRQEAKPIIRAIRELTQVHGVGPRTAIDYFKKYGISTVAQLRDYAIKAGELDMSNK 1133
Query: 326 DS----------------LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE- 368
DS L +QRLGL Y++D+ RIP E E ++ + L +
Sbjct: 1134 DSGKPSNLVVCADKSKFHLNDAQRLGLVYYEDMCHRIPHEEGRLHEAFMKLRMRKYLGKD 1193
Query: 369 -VIILCGGSYRRGKASCGDLDVVIMHPDRKSHKG---------FLSKYVKKLKEMKFLRE 418
+++C GSYRR S GD+DV+I H + G L ++ LK K++
Sbjct: 1194 YELVVC-GSYRRQVESAGDIDVLITHKRSATEGGDRPLLPPSEVLGSFLAGLKADKYIEA 1252
Query: 419 DL 420
L
Sbjct: 1253 TL 1254
>gi|146078013|ref|XP_001463421.1| putative mitochondrial DNA polymerase beta-PAK [Leishmania infantum
JPCM5]
gi|134067506|emb|CAM65785.1| putative mitochondrial DNA polymerase beta-PAK [Leishmania infantum
JPCM5]
Length = 1481
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 121/302 (40%), Gaps = 90/302 (29%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAI-------------------------- 240
PD + + +IF +L I ALGE +S Y + +
Sbjct: 956 PDYRERVVQIFEQLTQINSALGERFKSQLYGRTVERFKRGDKVFQLLPPNLLPLPEEDPK 1015
Query: 241 --PVIEKLPFKIESADQVKG--------------------LPGIGKSMQDHIQEIVTTGK 278
+IE L +K + A Q K +PG+G +++ + EI+ TG
Sbjct: 1016 KKAIIEAL-YKDDPAAQKKRVEEVERNRAKRSLVLSSDNLIPGLGTKLREKVIEILVTGG 1074
Query: 279 LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLD------------DLKNE 325
L +L E +R I +V G+GP TA ++K G T+ D+ N+
Sbjct: 1075 LEELHRQEAKPIIRAIRELTQVHGVGPRTAIDYFKKYGISTVAQLRDYAIKAGELDMSNK 1134
Query: 326 DS----------------LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE- 368
DS L +QRLGL Y++D+ RIP E E ++ + L +
Sbjct: 1135 DSGKPSNLVVCADKSKFHLNDAQRLGLVYYEDMCHRIPHEEGRLHEAFMKLRMRKYLGKD 1194
Query: 369 -VIILCGGSYRRGKASCGDLDVVIMHPDRKSHKG---------FLSKYVKKLKEMKFLRE 418
+++C GSYRR S GD+DV+I H + G L ++ LK K++
Sbjct: 1195 YELVVC-GSYRRQVESAGDIDVLITHKRSATEGGGRPLLPPSEVLGSFLAGLKADKYIEA 1253
Query: 419 DL 420
L
Sbjct: 1254 TL 1255
>gi|297190382|ref|ZP_06907780.1| PHP domain-containing protein [Streptomyces pristinaespiralis ATCC
25486]
gi|197720406|gb|EDY64314.1| PHP domain-containing protein [Streptomyces pristinaespiralis ATCC
25486]
Length = 575
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 86/317 (27%), Positives = 139/317 (43%), Gaps = 59/317 (18%)
Query: 228 GEDRRSFSYYKAIPVIEKLPFKIESADQVKGL---PGIGKSMQDHIQEIVTTGKLSKLEH 284
GE ++ +Y KA + P + D KGL P +G+S+ D I E + TG++S +E
Sbjct: 24 GEAFKARAYEKAARAVGGFPTDVSKLD-AKGLREIPNVGRSVADKIVEYLRTGRMSVVEE 82
Query: 285 FEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLDDLKNEDSLTHSQRL-GLKYFDDI 342
L + G+GP A LYE+ ++D L + H +RL LK F +
Sbjct: 83 ARASVPAGVRELI-MIPGLGPRKAMVLYEELEVASVDQLLDA---IHKERLRDLKGFGER 138
Query: 343 KTRIPRHEVEQME-----RLLQKAGEEVLPEVI---------ILC--GGSYRRGKASCGD 386
H + ++ R+L A +V +++ + C GS RR K + GD
Sbjct: 139 TESNLLHGISVLQKAGEGRILVSAAMDVAEQLVAELSDIRGCVRCSYAGSLRRMKETIGD 198
Query: 387 LDVVIMHPDRKS-----------HKG-FLSKYVKK--LKEMKFLREDLIFSTHSEEVYPR 432
+D+++ R+S H +++ KK ++ L+ DL V P
Sbjct: 199 VDILVAA--RRSAPFMDALTALPHTAEVIARGEKKTSVRTTTGLQVDL-------RVLPP 249
Query: 433 DIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTE 492
+ GL +TG+ N R R +A +G +L + GLF A G S+ TE
Sbjct: 250 ASWGAGLQYFTGSKAHNIRTRAIAVRQGLKLSEYGLFDAESGE----------SITSGTE 299
Query: 493 KEVFDFLGFPWLEPHER 509
+E++D LG PW+ P R
Sbjct: 300 EEIYDRLGLPWIPPTLR 316
>gi|254582759|ref|XP_002499111.1| ZYRO0E04048p [Zygosaccharomyces rouxii]
gi|186703773|emb|CAQ43463.1| DNA polymerase IV [Zygosaccharomyces rouxii]
gi|238942685|emb|CAR30856.1| ZYRO0E04048p [Zygosaccharomyces rouxii]
Length = 552
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 90/189 (47%), Gaps = 11/189 (5%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQV-KGLPGIGKSMQD 268
N+ + + L + Y+ G++ RS Y A I++LP +IES Q K + +G S+
Sbjct: 175 NELVIKFLDILAHRYKVKGDNFRSRGYNLAKIGIQRLPHEIESGVQAQKEVSNVGSSIAK 234
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL 328
IQ I+ TG L +E + ++ + +G TA++ G ++ ++ +
Sbjct: 235 KIQTILDTGTLPGA--YESPQFEESLQYLSKCHNVGTYTARRWTNLGLKSFAEVSQK--F 290
Query: 329 THSQR------LGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA 382
H + G +++D IPR E Q+ER++ + + V P + GSY RG
Sbjct: 291 PHELKTDWPILFGWSFYEDWSIPIPRQECSQIERIVNQELKSVDPACQVEIQGSYLRGAD 350
Query: 383 SCGDLDVVI 391
CGDLD++
Sbjct: 351 YCGDLDMLF 359
>gi|157864821|ref|XP_001681119.1| putative mitochondrial DNA polymerase beta-PAK [Leishmania major
strain Friedlin]
gi|68124413|emb|CAJ02269.1| putative mitochondrial DNA polymerase beta-PAK [Leishmania major
strain Friedlin]
Length = 673
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 81/166 (48%), Gaps = 32/166 (19%)
Query: 259 LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHR 317
+PG+G +++ + EI+ TG L +L E +R I +V G+GP TA ++K G
Sbjct: 239 IPGLGTKLREKVIEILVTGGLEELHRQEAKPIIRAIRELTQVHGVGPRTAIDYFKKYGIS 298
Query: 318 TLD------------DLKNEDS----------------LTHSQRLGLKYFDDIKTRIPRH 349
T+ D+ N+DS L +QRLGL Y++D+ RIP
Sbjct: 299 TVAQLRDYAIKAGELDMSNKDSGKPSNLVVCADKSKFHLNDAQRLGLVYYEDMCHRIPHE 358
Query: 350 EVEQMERLLQKAGEEVLPE--VIILCGGSYRRGKASCGDLDVVIMH 393
E E ++ + L + +++C GSYRR S GD+DV+I H
Sbjct: 359 EGRLHEAFMKLRMRKYLGKDYELVVC-GSYRRQVESAGDIDVLITH 403
>gi|108803335|ref|YP_643272.1| PHP-like protein [Rubrobacter xylanophilus DSM 9941]
gi|108764578|gb|ABG03460.1| PHP-like protein [Rubrobacter xylanophilus DSM 9941]
Length = 574
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 85/326 (26%), Positives = 143/326 (43%), Gaps = 36/326 (11%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIES----ADQVKGLPG 261
P N I EI ++ ++ GE+ R +Y +A +E P + + + LPG
Sbjct: 2 PVHNAEIAEILYEVADLLEIEGENPFRVRAYREAARTVENHPRSLAEMAGEGEDLTRLPG 61
Query: 262 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLD 320
IG+ + D I+EI TG L + E + L G V G+GP ++L+ + G +
Sbjct: 62 IGEDLADKIREIARTGTLRQAEELRERVPPGLRGLLG-VPGLGPRRVRELHRRLGVESAA 120
Query: 321 DLKNEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERL-LQKAGEEVLPEVIILCG-- 374
+L+ +RL G K +I + R E Q RL + L E + CG
Sbjct: 121 ELERAAREGRVRRLPGFGAKTERNILEALGRKERPQRFRLSAAEPAARALEEHLEGCGAV 180
Query: 375 ------GSYRRGKASCGDLDVVIMHPD-RKSHKGFLS-KYVKKLKEMKFLREDLIFSTHS 426
GS+RR K + GDLDVV + R+ + F++ + ++++ R ++
Sbjct: 181 REAVVAGSFRRRKETVGDLDVVACSQEGRRVIEHFVAFEDIERVVSKGSTRSSVVLKNGL 240
Query: 427 E---EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRA 483
E V P + + L+ +TG + LR +A + +L++ GLF G+
Sbjct: 241 EADLRVVPEESFGTALLYFTGAQPHHVALRDMALKRRLKLNEYGLFRGEERVAGR----- 295
Query: 484 RTSLKFDTEKEVFDFLGFPWLEPHER 509
TE+EV+ LG ++EP R
Sbjct: 296 -------TEEEVYAQLGLRYIEPELR 314
>gi|149173335|ref|ZP_01851965.1| DNA polymerase beta family protein [Planctomyces maris DSM 8797]
gi|148847517|gb|EDL61850.1| DNA polymerase beta family protein [Planctomyces maris DSM 8797]
Length = 573
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 83/325 (25%), Positives = 138/325 (42%), Gaps = 38/325 (11%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIES-----ADQVKGLPGIG 263
N I F +L ++ G + R +Y A I LP I+ +++ LPGIG
Sbjct: 3 NSEIARQFEELADLLEIQGANPFRLRAYRNAARTISGLPDSIQDIVESDPRELQDLPGIG 62
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDL 322
K + + I IV T L +LE ++ + + ++ GIGP L+ E ++LDDL
Sbjct: 63 KDLAEKIVTIVETSTLPQLEELKEQIPADVVRML-DIPGIGPKKVAFLFSELSIQSLDDL 121
Query: 323 K--NEDSLTHSQR-----------LGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEV 369
K E+ + Q+ GL++ + R+ E + + ++
Sbjct: 122 KAAAENGVIAEQKGFGKKTEQIILEGLEHLNQAGNRVRLAEAKAQSDAIIHDLSKLDSVQ 181
Query: 370 IILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY--VKKLKEMKFLREDLIFSTHSE 427
I GS RR K S GDLDV++ L+ + V K+ ++ + ++ E
Sbjct: 182 QISEAGSCRRRKESVGDLDVLVTSSQPAEVMDALADHELVNKVLARGDTKQRVRLNSGLE 241
Query: 428 ---EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRAR 484
V P + Y L+ +TG+ N LR ++ +G +L++ GLF GK
Sbjct: 242 LDLRVVPEESYGAALLYFTGSKEHNIVLRRRSQDRGLKLNEYGLFREDELISGK------ 295
Query: 485 TSLKFDTEKEVFDFLGFPWLEPHER 509
TE+EV+ L PW+ P R
Sbjct: 296 ------TEEEVYKALDLPWIPPEIR 314
>gi|325294733|ref|YP_004281247.1| PHP domain-containing protein [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065181|gb|ADY73188.1| PHP domain protein [Desulfurobacterium thermolithotrophum DSM
11699]
Length = 574
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 122/280 (43%), Gaps = 53/280 (18%)
Query: 259 LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHR 317
LPGIG+ +Q I E + TGK+ + E ++ SL ++ G+GP T + LYE G R
Sbjct: 56 LPGIGQKLQAKIIEFLKTGKIEEFEKLKQQVPDTIFSLL-DIPGVGPKTVKLLYETLGIR 114
Query: 318 TLDDLK---NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIIL-- 372
+++DLK + L GLK + IK I LL+K G +L V +
Sbjct: 115 SVEDLKRAIEKGELLKLPGFGLKKVEKIKKGI---------ELLEKNGGRILLGVAVFIA 165
Query: 373 -----------------CGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEM-- 413
GS RR K + GD+D++ + + + F++ + +KE+
Sbjct: 166 DRIINLLKEHSAVERISVAGSTRRMKETVGDIDILATGKNLEIIEAFVN--LPNIKEVLW 223
Query: 414 KFLREDLIFSTHSEEVYPR----DIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLF 469
K ++ + E+V R + Y L +TG+ N LR + +GY+L++ GLF
Sbjct: 224 KGTKKATVIVEEGEQVDLRVTEPESYGAALQYFTGSKAHNIHLRTICLKQGYKLNEYGLF 283
Query: 470 PATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
GK TE+E++ LG P R
Sbjct: 284 KEEEKIAGK------------TEEEIYKALGMETPPPEIR 311
>gi|21227996|ref|NP_633918.1| DNA polymerase beta [Methanosarcina mazei Go1]
gi|20906424|gb|AAM31590.1| DNA polymerase beta [Methanosarcina mazei Go1]
Length = 584
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 144/337 (42%), Gaps = 51/337 (15%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKG------LPGIG 263
N+ + E+ + +I + + +Y +A IE IE + KG +PG+G
Sbjct: 3 NREVAELLYETADIMEFQQIEWKPRAYRRAAQNIENFGEDIEKVYEKKGKKGLTEIPGVG 62
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLDDL 322
+S+ DHI E + TGK+ K E + T L E+ G+G +KL +K +T+ DL
Sbjct: 63 ESIADHIAEYLKTGKVEKFEGLKGKAPSGTAELM-EIRGLGAKKMKKLADKLEIKTMSDL 121
Query: 323 KNEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVLPEVI------ 370
KN +RL G+K ++I I +E L KA EE++ +
Sbjct: 122 KNAVKSHRIRRLSGFGVKSEENIARAIENYEKSHSRIPLGKALPLAEEIISGLKEELKNG 181
Query: 371 --------ILCGGSYRRGKASCGDLDVVIMHPDRKSHK---GFLS-----KYVKK--LKE 412
I+ GS RR K + GD+D++ + + K F+S + V K +
Sbjct: 182 TPGLDLSRIIYTGSLRRLKETIGDIDILAEAEEADAGKIMDAFVSLPEAGQVVSKGRTRS 241
Query: 413 MKFLREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPAT 472
L+E V P + Y L +TG+ N LR +A +GY+L + GL+
Sbjct: 242 SVILKEGFAIDLR---VVPPESYGAALQYFTGSKEHNIGLRNIALREGYKLSEYGLYSKN 298
Query: 473 YGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
G + +E+E++ LG ++ P R
Sbjct: 299 SGE----------RIAGKSEEEIYRKLGLEYIAPELR 325
>gi|340053719|emb|CCC48012.1| putative mitochondrial DNA polymerase beta-PAK [Trypanosoma vivax
Y486]
Length = 1118
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 83/371 (22%), Positives = 150/371 (40%), Gaps = 110/371 (29%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEK------------LPFKIESAD 254
PD + + +F KL +I AL E ++ SY A+ +++ +P ++ A+
Sbjct: 618 PDHREKVLTVFQKLSDINIALQERYKAHSYQFALERLKRDDYIYTHLPPHIMPPGVDDAE 677
Query: 255 Q------VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATA 308
+ V+ +P IG ++ I EI+TTG L +L + ++ I ++ G+GP TA
Sbjct: 678 RRRRVAAVEAIPNIGDKLKTKIVEILTTGDLEELHGLQAKPVIKAIRELTQIHGVGPRTA 737
Query: 309 QKLYEK-GHRTLDD----LKNEDS------------------------------------ 327
L++K G +T+++ ++ +++
Sbjct: 738 VVLFKKYGLKTVEEVEKRIREQEAAQASSGVAGSDGKTNKGGAKKGRGGKVADGEVPLLQ 797
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEV--IILCGGSYRRGKASCG 385
LT +QR GLKY D RIP EV E L+ + L + + +C GSYRR + G
Sbjct: 798 LTEAQRCGLKYHSDFAQRIPHEEVRLHEAFLKLRLRKYLGKSYELSIC-GSYRRRLPTSG 856
Query: 386 DLDVVIMH-------------------PDRKSHKGFLSKYVKKLKEMKFLREDLI----- 421
D+DV++ D K + L+ +V LK+ ++ L
Sbjct: 857 DIDVLLTRRMGSKDASDGEDDETAGDVQDVKPQE-VLAAFVDALKKEHYIEATLAQGATK 915
Query: 422 -------------FSTHSEEVYPR----------DIYAFGLIAWTGNDVLNRRLRLLAES 458
+ S ++YP + + L+ +TG+ N +R A
Sbjct: 916 FMGVSRLKSYGYNTDSASPKMYPARRLDIRFVEPECFPAALLYFTGSKTFNVVMRAEAIK 975
Query: 459 KGYRLDDTGLF 469
+ + L++ GLF
Sbjct: 976 QNFVLNEYGLF 986
>gi|20067735|emb|CAD29108.1| chimeric DNA-directed DNA polymerase xf4-6h [synthetic construct]
Length = 192
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 95/188 (50%), Gaps = 30/188 (15%)
Query: 340 DDIKTRIPRHEVEQMERLLQKAGEEVLPEVI-ILCG-GSYRRGKASCGDLDVVIMHPDRK 397
+D + RIPR E+ QM+ ++ +++ PE I +CG GS RR + D+D++I+ P++K
Sbjct: 16 EDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSGSLRREEKMLNDVDLLIIVPEKK 75
Query: 398 SHKGFLS---KYVKKLK---EMKFLREDLIFSTHSEEVYP----------RDIYAFGLIA 441
K L +++ + E KF+ + S + E YP +D Y G++
Sbjct: 76 LLKHVLPNIRRFITDTRSKGETKFMGVCQLPSENDENEYPHRRIDIRLIPKDQYYCGVLY 135
Query: 442 WTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGF 501
+TG+D+ N+ +R A + Y+L+ GLF + LK TEKE+ LGF
Sbjct: 136 FTGSDIFNKNMR--AHALNYKLNQYGLFKN----------QTLVPLKITTEKELIKELGF 183
Query: 502 PWLEPHER 509
+ P +R
Sbjct: 184 TYRIPKKR 191
>gi|20067745|emb|CAD29113.1| chimeric DNA-directed DNA polymerase xf4-5n [synthetic construct]
Length = 191
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 39/167 (23%)
Query: 372 LCGGSYRRGKASCGDLDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLR-EDLIFS--- 423
+ GS+RRG S GD+DV++ HP+ S L + V++L++++F+R + L FS
Sbjct: 34 IVAGSFRRGAESSGDMDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFIRIKGLSFSVKV 93
Query: 424 ---------------THSEEVY------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 462
T+ +++ P+D Y G++ +TG+D+ N+ +R A K Y+
Sbjct: 94 CGERKCVLFIEWEKKTYQLDLFTALAEEPKDQYYCGVLYFTGSDIFNKNMRAHALEKNYK 153
Query: 463 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
L+ GLF + LK TEKE+ LGF + P +R
Sbjct: 154 LNQYGLFKN----------QTLVPLKITTEKELIKELGFTYRIPKKR 190
>gi|289549356|ref|YP_003474344.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484]
gi|289182973|gb|ADC90217.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484]
Length = 574
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 93/332 (28%), Positives = 152/332 (45%), Gaps = 49/332 (14%)
Query: 210 NKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIES---ADQVKGLPGIGKS 265
NK I IF ++ +I LG++ R +Y + ++ +L +E ++ +PGIG S
Sbjct: 4 NKEIARIFERMADILEFLGDNPYRINTYRRVANILSELGTDVEELVKTGKIYHIPGIGPS 63
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDL-- 322
+ I E + TGK+SK E ++ + L +V GIGP T + Y+K G R+ DD
Sbjct: 64 SVEKILEYLRTGKISKYEELKEKVPEDLLELL-DVPGIGPKTLKLAYDKLGIRSKDDFVR 122
Query: 323 ------------KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQM--ERLLQKAGEEVLPE 368
E L + R GL+ ++ K R+ E Q+ + LL E L
Sbjct: 123 AVRSGVLASLPGMGEKKLQNIMR-GLELYERAKERMSLIEAYQLGEDILLHMQKIEDLYT 181
Query: 369 VIILCGGSYRRGKASCGDLDVVIMHPDR---KSHKGFLSKYVKKLKEM--KFLREDLIFS 423
I L GS RR K + GD+D+++ P K H F++ + +KE+ K + I
Sbjct: 182 NIELA-GSLRRRKETVGDIDLLVAAPKEVWSKIHNHFVT--FQGVKEILGKGETKSSILL 238
Query: 424 THSEEVYPRDI----YAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQ 479
+ +V R + + L +TG+ N R+R +A+++G +L + G+F
Sbjct: 239 ENGRQVDMRTVEPHQWGSALQYFTGSKEHNVRVRDIAKARGLKLSEYGVF---------- 288
Query: 480 GVRARTS--LKFDTEKEVFDFLGFPWLEPHER 509
RA T L TE+EV+ +G P R
Sbjct: 289 --RADTEEWLGGRTEEEVYSLVGMQTPPPEIR 318
>gi|20067741|emb|CAD29111.1| chimeric DNA-directed DNA polymerase xf4-5m [synthetic construct]
Length = 197
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 96/192 (50%), Gaps = 34/192 (17%)
Query: 340 DDIKTRIPRHEVEQMERLLQKAGEEVLPEVI-ILCG--GSYRRGKASCGDLDVVIMHPDR 396
+D + RIPR E+ QM+ ++ +++ PE I +CG GS RR + D+D++I+ P++
Sbjct: 17 EDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFGSLRREEKMLNDVDLLIIVPEK 76
Query: 397 KSHKGFLSKYVKKLKEMKFL------REDLIFSTHSEEVY----------PRDIYAFGLI 440
K K L ++K + F R+ ++F ++ Y P+D Y G++
Sbjct: 77 KLLKHVLPNI--RIKGLSFSVKVCGERKCVLFIEWEKKTYQLDLFMALAEPKDQYYCGVL 134
Query: 441 AWTGNDVLNRRLRLLAESKG---YRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFD 497
+TG+D+ N+ +R A KG Y+L+ GLF + LK TEKE+
Sbjct: 135 YFTGSDIFNKNIRAHALEKGFTNYKLNQYGLFKN----------QTLVPLKITTEKELIK 184
Query: 498 FLGFPWLEPHER 509
LGF + P +R
Sbjct: 185 ELGFTYRIPKKR 196
>gi|313127204|ref|YP_004037474.1| DNA polymerase iv (family x) [Halogeometricum borinquense DSM
11551]
gi|448288324|ref|ZP_21479524.1| DNA polymerase iv (family x) [Halogeometricum borinquense DSM
11551]
gi|312293569|gb|ADQ68029.1| DNA polymerase IV (family X) [Halogeometricum borinquense DSM
11551]
gi|445569843|gb|ELY24413.1| DNA polymerase iv (family x) [Halogeometricum borinquense DSM
11551]
Length = 582
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 82/330 (24%), Positives = 142/330 (43%), Gaps = 38/330 (11%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE-----SADQVKGLPGIGK 264
N + +F + ++ A + +Y +A I + P IE AD V + G+G
Sbjct: 4 NDEVASLFEEFADLLDAKDVSYKPNTYRRAAENIREYPHPIEELAADGADAVGEIQGVGD 63
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 323
++ I E TG++ +LE + V +L V G+GP T KLY+ G TLD+L+
Sbjct: 64 AISAKIIEYFETGEIEELEALRAELPVEMATLTS-VEGVGPKTVGKLYDALGITTLDELE 122
Query: 324 ---NEDSLTHSQRLGLKYFDDIKTRIP-RHEVEQMERL--LQKAGEEVLPEV-------I 370
E+ + + G K +I+ IP E ++ ERL + ++VL +
Sbjct: 123 RAAEEEQIREVKGFGPKTEANIRENIPFAREAQKRERLGNARPLADDVLAYLREADTVQA 182
Query: 371 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY-----------VKKLKEMKFLRED 419
GS RR + + GD+DV++ S + + K +R D
Sbjct: 183 AEVAGSIRRWRDTIGDVDVLVAAESGDSVVEAFTDWPAANTVIEAGPSKASVRSSGIRVD 242
Query: 420 LIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQ 479
L V P + + L +TG+ N LR +A KG ++++ G+F + +
Sbjct: 243 LRV------VVPEE-FGAALQYFTGSKDHNVALRNIAIEKGLKMNEYGVFDVSDVEDPET 295
Query: 480 GVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
RA + +TE +++ LG P++ P R
Sbjct: 296 DQRAGEKIAGETEASMYEALGLPFIPPELR 325
>gi|302039123|ref|YP_003799445.1| putative DNA-directed DNA polymerase [Candidatus Nitrospira
defluvii]
gi|300607187|emb|CBK43520.1| putative DNA-directed DNA polymerase, family X, modulated with
phosphoesterase domain [Candidatus Nitrospira defluvii]
Length = 576
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 78/328 (23%), Positives = 138/328 (42%), Gaps = 45/328 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKI----ESADQVKGLPGIGK 264
N + F ++ ++ G + R +Y A + LP ++ + + GLPGIG
Sbjct: 5 NAEVATAFEEMADLLEIEGANPFRVRAYRFAARTLRDLPAEVGEMVAKGEDLTGLPGIGD 64
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGP---------------ATAQ 309
+ I+EI++TG + +E K T++ + G+GP + Q
Sbjct: 65 DLAGKIKEILSTGTAAAIEAQRKRVPA-TVTELLRIPGLGPKRVKTLTQELKIRSPSELQ 123
Query: 310 KLYEKGH-RTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVL 366
K ++G RTL K E + + L +K + E + L E++
Sbjct: 124 KAAQEGRVRTLAGFGEKTEQHILAALAARLAEAPRVKRAVAIPYAEALVAYL----EQLS 179
Query: 367 PEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY--VKKLKEMKFLREDLIFST 424
++ GSYRRG + GDLD++ + P + Y V+ + + + +
Sbjct: 180 GVGRVMAAGSYRRGLETIGDLDILAVAPAGRPVTDRFVAYQEVRDVLAHGETKASVRLQS 239
Query: 425 HSE---EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGV 481
+ V P++ Y L+ +TG+ N LR LA+ +G +L++ GLF
Sbjct: 240 GLQVDLRVVPQESYGAALLYFTGSKSHNVVLRQLAQQRGLKLNEYGLF------------ 287
Query: 482 RARTSLKFDTEKEVFDFLGFPWLEPHER 509
R T + +TE+ V+ LG PW+ P R
Sbjct: 288 RGDTRVAGETEESVYAALGLPWIPPELR 315
>gi|389740563|gb|EIM81754.1| Nucleotidyltransferase, partial [Stereum hirsutum FP-91666 SS1]
Length = 393
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 85/163 (52%), Gaps = 8/163 (4%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
S+ AI VI+ L + ++S + + L GIG + I + GK K + + +K +
Sbjct: 7 SFQTAINVIKTLDYPLKSGKEAEKLRGIGPKISARIDAFIN-GKGPKTQA-KALKKTKAA 64
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNE---DSLTHSQRLGLKYFDDIKTRIPRHEV 351
SLF V G+G ATA KL G ++ D++ D LT +Q++GL Y D + + R +
Sbjct: 65 SLFQTVPGVGYATAMKLVNAGCTSIKDMRKPEYFDMLTPAQKVGLMYIDHLDMPVTREQS 124
Query: 352 EQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
E + ++ + + + I+ GSYRR + D+D+++ HP
Sbjct: 125 ESVADFIR---DHISSKFEIVHSGSYRRKALTSSDIDILLFHP 164
>gi|408533755|emb|CCK31929.1| PHP domain protein [Streptomyces davawensis JCM 4913]
Length = 591
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 84/333 (25%), Positives = 149/333 (44%), Gaps = 55/333 (16%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESADQ--VKGLPGIGKSM 266
N + +F + ++ G D R+ Y KA I + + D +K +PG+GKS+
Sbjct: 23 NDEVAALFREYADLISITGGDAFRARVYEKAARAIGGHHTDVSTLDAKGLKEIPGVGKSI 82
Query: 267 QDHIQEIVTTGKLSKLEHFEK--DEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 323
D + E + +G ++ +E E VR ++ + +GP A LYE+ G ++D+L
Sbjct: 83 ADKVVEYLDSGSVAAVEELRARIPEGVRRLT---AIPSLGPRKALMLYEELGISSVDELA 139
Query: 324 NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQME--RLLQKAG------------EEVLPEV 369
+ H +RL D+K PR E + LL+ +G EEV+ +
Sbjct: 140 DA---IHEERL-----RDLKGFGPRTEENLLHGIDLLRSSGGRVHIDVAAELAEEVVAAL 191
Query: 370 IILCG-------GSYRRGKASCGDLDVVIMH----PDRKSHK--GFLSKYVKKLKEMKFL 416
+ G GS RRG+ + GD+DV++ P K+ ++++ + ++ +
Sbjct: 192 SEVSGVQRCAYAGSLRRGRETIGDIDVLVAARTSGPVMKAFTELPYVTEVIGSGEKKTSV 251
Query: 417 REDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSG 476
R D S V P+D + ++ +TG+ N ++R A + +L + GLF A G
Sbjct: 252 RTDRGLSV-DLRVVPKDSWGAAMLYFTGSKAHNIKVRERAVHQKLKLSEYGLFDAESGK- 309
Query: 477 GKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ TE++V+ LG PW+ P R
Sbjct: 310 ---------KIVSRTEEDVYARLGLPWIAPALR 333
>gi|405117777|gb|AFR92552.1| hypothetical protein CNAG_00419 [Cryptococcus neoformans var.
grubii H99]
Length = 343
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 79/153 (51%), Gaps = 16/153 (10%)
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--- 326
I ++VT + +LE D + + F + GIG A+ E+G TL DL +
Sbjct: 102 IYDLVTKKVIPRLEVL--DNRWNAMVKFNRIHGIGKIRARAFAEEGIETLSDLMIAEGGR 159
Query: 327 -SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
+++ +Q+L ++Y +++ IPR EVEQ +R+++ A P++ GSYRRG++
Sbjct: 160 FTVSDAQKLAIQYHEEMDVMIPRAEVEQFDRIIKDALRREDPKLDFATMGSYRRGESLSS 219
Query: 386 DLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLRE 418
D+DVV+ H Y KK KE K R+
Sbjct: 220 DIDVVVWH----------ESYTKKEKEGKRARK 242
>gi|363748350|ref|XP_003644393.1| hypothetical protein Ecym_1342 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888025|gb|AET37576.1| hypothetical protein Ecym_1342 [Eremothecium cymbalariae
DBVPG#7215]
Length = 531
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 94/191 (49%), Gaps = 18/191 (9%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N I+E +L GE + +Y A + + + + + LP +G +
Sbjct: 154 NVIISEALQRLATKSNLQGEPFKRRAYMMASAALLECGHPVRTYEDALALPDVGSGIATK 213
Query: 270 IQEIVTTG-KLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL 328
I ++V G ++ LE + E+ + + F + +GP TA + +++ D+ L
Sbjct: 214 IAQLVANGGRIPGLE-LDLSEQEKILEYFVQCHEVGPTTASQWQALHYKSFKDV-----L 267
Query: 329 THSQRL--------GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRG 380
TH+++ G+++F++ + R+PR EVE+ ++K + P ++I GSYRRG
Sbjct: 268 THTKQWNLHWSILYGMRFFEEWQLRMPRSEVEEHLEFIRKHAQ---PGLVIEAMGSYRRG 324
Query: 381 KASCGDLDVVI 391
+ CGD+D+++
Sbjct: 325 RKDCGDIDLLV 335
>gi|167537826|ref|XP_001750580.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163770876|gb|EDQ84553.1| predicted protein [Monosiga brevicollis MX1]
Length = 499
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/332 (23%), Positives = 124/332 (37%), Gaps = 90/332 (27%)
Query: 221 INIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLS 280
++I AL ED + Y I + + KI + D ++ LP IG I++I+ TG L
Sbjct: 215 VHILSAL-EDMKELLYDPRIDKLRGVRTKITTTDGLEDLPFIGAKTIRKIEDILETGTLE 273
Query: 281 KLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFD 340
+LEH EK++ AQ+L+ K
Sbjct: 274 RLEH-ANTEKIQ---------------AQRLFAK-------------------------- 291
Query: 341 DIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHK 400
RIPR EV+ M L+ ++ + ++L GSY RG+ +CGD+D ++ H D +
Sbjct: 292 ---ERIPRSEVDDMVTLVTSTLRDIDADAVVLPSGSYTRGRQTCGDVDFLLTHGDPRRVP 348
Query: 401 GFLSKYVKKLKEMKFLREDLIFSTHSEE-------------------------------- 428
L+ + LK FL DL +
Sbjct: 349 HLLAPLLHALKATNFLTHDLTTVDAASTGTTDYGGDDDDAEARDYIDKYMGVARLRGGLH 408
Query: 429 ------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVR 482
V P +A + + G+ NR +RLLA + L+ L A ++
Sbjct: 409 RRVDFIVLPPHEWACAALYFAGSGTFNRSMRLLARKANWSLNQRHLMVAV--KRDREDAN 466
Query: 483 ARTSLKFDT----EKEVFDFLGFPWLEPHERN 510
+T F E ++F +LG + PH RN
Sbjct: 467 TKTFAGFVVPCLDEYDIFAWLGIEYQPPHLRN 498
>gi|367010826|ref|XP_003679914.1| hypothetical protein TDEL_0B05740 [Torulaspora delbrueckii]
gi|359747572|emb|CCE90703.1| hypothetical protein TDEL_0B05740 [Torulaspora delbrueckii]
Length = 578
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 120/254 (47%), Gaps = 27/254 (10%)
Query: 163 TNALSEAPNSPMSSESLTNTLSTASASPD--------FSSHHITDPS--------LLYNP 206
N+++E P+ + +S + T + + AS D S ++ PS L +
Sbjct: 129 VNSINEVPSEEVQYKSQSETAAGSHASADKHMDTGENLPSEKLSSPSEVPTERLTRLIDE 188
Query: 207 PDLNKN--ITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVK-GLPGIG 263
+KN + + G+L Y G+ RS Y A +E+ PF+I S +Q + + +G
Sbjct: 189 DKTSKNELLIKALGRLAKRYDVKGDRYRSRGYKLAKIGVERYPFEILSGEQARREIASVG 248
Query: 264 KSMQDHIQEIVTTGKLSKL-EHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL 322
S+ IQ I+ TG L L E F+ ++K ++ + + +G +A++ G T ++
Sbjct: 249 SSIARKIQIILDTGGLPGLDEAFDLEKK---LNYYTQCHDVGVYSAKRWNLLGLTTFSEV 305
Query: 323 KN---EDSLTHSQRL-GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYR 378
E L L G Y++D RI R E E++ ++++ +++ PE + GSY
Sbjct: 306 SKKFPEIFLRDWTVLFGWSYYEDWLKRISRAECEEVLKVVKDNLKQIDPEFKVELQGSYV 365
Query: 379 RGKASCGDLDVVIM 392
RG CGD+D++
Sbjct: 366 RGALECGDIDLLFF 379
Score = 38.5 bits (88), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 15/73 (20%)
Query: 440 IAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSL--KFDTEKEVFD 497
+ WTG NR +R+ A KG +L GL+ R T+L FD E+ +F+
Sbjct: 510 LQWTGPKEFNRWIRIQAAQKGMKLTQHGLY------------RGETTLLESFDEER-IFE 556
Query: 498 FLGFPWLEPHERN 510
LG ++ P ERN
Sbjct: 557 LLGEEYVGPEERN 569
>gi|198284782|ref|YP_002221103.1| PHP domain-containing protein [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218666221|ref|YP_002427466.1| DNA polymerase X family protein [Acidithiobacillus ferrooxidans
ATCC 23270]
gi|198249303|gb|ACH84896.1| PHP domain protein [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218518434|gb|ACK79020.1| DNA polymerase X family protein [Acidithiobacillus ferrooxidans
ATCC 23270]
Length = 576
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 82/339 (24%), Positives = 137/339 (40%), Gaps = 61/339 (17%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSF---SYYKAIPVI----EKLPFKIESADQVKGL 259
P LN +I F ++ ++ ED F +Y A ++ L +E+ + + L
Sbjct: 2 PVLNPDIARAFDEIADLLEI--EDANPFRVRAYRTAARLVLGLSSDLKTMVEAGEDLTEL 59
Query: 260 PGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTL 319
PGIG+ + I EIVTTG S LE EK L +V G+GP + L+ +
Sbjct: 60 PGIGEDLAKKIIEIVTTGHCSFLEKLEKQTPPALTELL-KVPGLGPKRVKALWHEL---- 114
Query: 320 DDLKNEDSLTHSQRLG----------------LKYFDDIKTRIPRHEV-------EQMER 356
D++ D LT + R G L+ +PR + + R
Sbjct: 115 -DVETVDQLTRAAREGRIRSIPGFGEKTEARILEALQAQIAAVPRFPIAVAAPYAAALVR 173
Query: 357 LLQKAGEEVLPEV-IILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY--VKKLKEM 413
LQ +P V ++ GS+RRG+ + GDLD++ + Y V ++
Sbjct: 174 YLQN-----VPGVRRVVVAGSFRRGRDTVGDLDILATATADSPVMERFTAYEDVAEVFSQ 228
Query: 414 KFLREDLIFSTHSE---EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 470
R +I + Y L +TG+ N +R + + G ++++ GLF
Sbjct: 229 GTTRATVILRNKLQVDLRAVDESSYGAALHYFTGSKSHNIAIRRMGQDMGLKVNEYGLF- 287
Query: 471 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
R + + DTE+ V+ +G P++EP R
Sbjct: 288 -----------RGKERIAGDTEESVYAAVGLPYIEPELR 315
>gi|116754615|ref|YP_843733.1| phosphotransferase domain-containing protein [Methanosaeta
thermophila PT]
gi|116666066|gb|ABK15093.1| PHP C-terminal domain protein [Methanosaeta thermophila PT]
Length = 588
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 92/343 (26%), Positives = 143/343 (41%), Gaps = 48/343 (13%)
Query: 199 DPSLLYNPPDLN----KNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESA 253
+PSLLY+ N K I I ++ + GE+R + +Y +A IE L IE
Sbjct: 5 EPSLLYHLVRFNHVRNKEIAAILYEMGELLEIRGENRFKVIAYSRAARAIESLKEDIEDV 64
Query: 254 ---DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 310
++ +PG+GK++ + I E +TTG + + L ++ G+GP T
Sbjct: 65 WRRGELDRIPGVGKAIAEKISEYLTTGHIKAYDDLVSSTPKGMKELL-QLQGVGPKTVAL 123
Query: 311 LYEK-GHRTLDDLKNEDSLTHSQRL---GLKYFDDIKTRIPRHE--------------VE 352
L+EK G T+D+L+ +RL G +I I RH VE
Sbjct: 124 LHEKLGVSTVDELEAAARQHRIRRLPGMGPTKEANILKAIERHRRRSTRIPLSVAVRIVE 183
Query: 353 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIM--HPDRKSHKGFLSKYVKKL 410
+ R L+ G E L + + GSYRRGK + GD+D++ P V +
Sbjct: 184 HIMRHLE--GIEGLSNITV--AGSYRRGKETVGDIDILATSSRPSESIAAFVRMPMVDDI 239
Query: 411 KEMKFLREDLIFSTHSEE----VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDT 466
+ +I + V PR Y L +TG+ N +LR +A +GY L +
Sbjct: 240 LGQGPTKASIIIEGTVQVDLRIVEPRS-YGTLLQYFTGSKEHNVKLRGIALQRGYSLSEY 298
Query: 467 GLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
L G L FD E++V+ LG ++ P R
Sbjct: 299 SLKRLDTGE----------ELFFDREEDVYKALGMQYIPPELR 331
>gi|154332627|ref|XP_001562130.1| putative mitochondrial DNA polymerase beta-PAK [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134059578|emb|CAM37160.1| putative mitochondrial DNA polymerase beta-PAK [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 1438
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 110/269 (40%), Gaps = 87/269 (32%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAI-------------------------- 240
PD + + ++F +L I ALGE +S SY + +
Sbjct: 910 PDYRERVVQLFEQLAQINSALGERFKSQSYGRTVEHLKRGDKVFQLLPPNLLPLPEDDPE 969
Query: 241 --PVIEKLPFKIESADQVKG--------------------LPGIGKSMQDHIQEIVTTGK 278
+E L +K +SA Q + +PG+G +++ + EI+ TG
Sbjct: 970 KKAAVEAL-YKDDSAAQRRRAEEVERNRAKRSLVLSPDNLIPGLGTKLREKVIEILVTGG 1028
Query: 279 LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLD-------------DLKNE 325
L +L E +R I +V G+GP TA ++K + D+ N+
Sbjct: 1029 LEELHRQEAKPIIRAIRELTQVHGVGPRTAIDYFKKHDISTVAQLRDYAIKAGELDMNNK 1088
Query: 326 DS----------------LTHSQRLGLKYFDDIKTRIPR-----HEVEQMERLLQKAGEE 364
DS L +QRLGL Y++D+ RIP HE R+ + G++
Sbjct: 1089 DSGKPSNLVACSDKSKFHLNDAQRLGLVYYEDMCHRIPHDEGRLHEAFMKLRMRKYLGKD 1148
Query: 365 VLPEVIILCGGSYRRGKASCGDLDVVIMH 393
+++C GSYRR S GD+DV+I H
Sbjct: 1149 Y---ELVVC-GSYRRQVESAGDIDVLITH 1173
>gi|119480717|ref|XP_001260387.1| terminal deoxynucleotidyl transferase, putative [Neosartorya
fischeri NRRL 181]
gi|119408541|gb|EAW18490.1| terminal deoxynucleotidyl transferase, putative [Neosartorya
fischeri NRRL 181]
Length = 673
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 5/138 (3%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT--GKLSKLEHFEKDEKVR 292
+Y +I + P++I ++ LPG + E + G L+ + + D ++
Sbjct: 339 AYSTSIAALAAYPYQIRRPSEILTLPGCDSKIAALFAEFKASEHGTLAAADALDTDPVLK 398
Query: 293 TISLFGEVWGIGPATAQKLYEKGH-RTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRH 349
T+ LF +WG+G TA+ Y K R LDD+ DSL+ Q++GLKY+D+ +PR
Sbjct: 399 TLHLFWNIWGVGAKTARDFYYKRQWRDLDDIIEHGWDSLSRVQQIGLKYYDEFLQGVPRP 458
Query: 350 EVEQMERLLQKAGEEVLP 367
E E + + + V P
Sbjct: 459 ETEAIAATITQHANRVRP 476
>gi|20067739|emb|CAD29110.1| chimeric DNA-directed DNA polymerase xf4-4l [synthetic construct]
Length = 186
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 93/184 (50%), Gaps = 29/184 (15%)
Query: 340 DDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSH 399
+D + RIPR E+ QM+ ++ +++ PE I GS RR + D+D++I+ P++K
Sbjct: 17 EDFEKRIPREEMLQMQDIVLNEVKKLDPEYI---AGSLRREEKMLNDVDLLIIVPEKKLL 73
Query: 400 KGFL-SKYVKKLK---EMKFLREDLIFSTHSEEVYP----------RDIYAFGLIAWTGN 445
K L ++++ + E KF+ + S + E YP +D Y G++ +TG+
Sbjct: 74 KHVLPNRFITDTRSKGETKFMGVCQLPSENDENEYPHRRIDIRLIPKDQYYCGVLYFTGS 133
Query: 446 DVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLE 505
D+ N+ +R A + Y+L+ GLF + LK TEKE+ LGF +
Sbjct: 134 DIFNKNMR--AHALNYKLNQYGLFKN----------QTLVPLKITTEKELIKELGFTYRI 181
Query: 506 PHER 509
P +R
Sbjct: 182 PKKR 185
>gi|319956700|ref|YP_004167963.1| php domain-containing protein [Nitratifractor salsuginis DSM 16511]
gi|319419104|gb|ADV46214.1| PHP domain protein [Nitratifractor salsuginis DSM 16511]
Length = 578
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 87/327 (26%), Positives = 144/327 (44%), Gaps = 42/327 (12%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFK----IESADQVKGLPGIGK 264
N I + F +L + G++ R +Y A IE + +E + LP IG+
Sbjct: 8 NSEIAQFFKELADYLEIKGDNPFRIRAYRNAARTIETSGYDFAKLVEEGYDLSQLPDIGE 67
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 323
+ I EIVTTGKLSKLE +K+ + L ++ G+GP + LYEK G +L++LK
Sbjct: 68 RIAKKIVEIVTTGKLSKLEEVKKEFPPHILDLL-KIEGLGPKKVKTLYEKLGIGSLEELK 126
Query: 324 N---EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKA------------GEEVLPE 368
E + G K + I + ++ E L +A G + + +
Sbjct: 127 KAAEEHKIRELPGFGEKTEEKILKGVVLYKKEGKRFLFAEAEPYASELYEYLKGFKAIHQ 186
Query: 369 VIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEM--KFLREDLIFSTHS 426
+ I GS+RR K + GDLD+V D + Y K+KE+ K I ++
Sbjct: 187 LTI--AGSFRRRKETVGDLDIVSTSDDPLGAMDHFASY-GKIKEIVSKGDTRSTIILENN 243
Query: 427 EEVYPRDI----YAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVR 482
+V R + Y L +TG+ N +R +A KG+++++ G+F
Sbjct: 244 LQVDFRCVSDLSYGAALHYFTGSKAHNIAVRKMAVEKGWKVNEYGVFNEKM--------- 294
Query: 483 ARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ TE+E++ G ++EP R
Sbjct: 295 --ERIAGKTEEEIYRLFGMDYIEPELR 319
>gi|374851400|dbj|BAL54361.1| phosphotransferase domain-containing protein [uncultured
Chloroflexi bacterium]
Length = 575
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 83/326 (25%), Positives = 150/326 (46%), Gaps = 40/326 (12%)
Query: 210 NKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIESADQ---VKGLPGIGKS 265
N+ + +F +L ++ GE + +Y + +E LPF+ + Q ++ +PG+G++
Sbjct: 3 NRQLAAVFRRLADLLEIRGEVVYKVLAYRRVADSLEALPFEAQRYWQEGRLREIPGVGEA 62
Query: 266 MQDHIQEIVTTGKLSKLEHFEKD------EKVRTISL----FGEVW-GIGPATAQKLYEK 314
+++ + E++ TG+L LE E + E +R L G +W +G AT ++L E
Sbjct: 63 IEEKLDELLRTGRLGFLERLEAEVPPTLTEWLRVPGLGPKRVGTIWRALGIATLEELEEA 122
Query: 315 GHR-TLDDLKNEDSLTHSQRL-GLKYFDDIKTRIPRHEVEQM-ERLLQKAGEEVLPEVI- 370
+ L L + T + L GL+ RIP + + ER+L++ +P V+
Sbjct: 123 ARQGRLRHLPGFGARTEANILAGLEALKRSHGRIPLGQALPLAERILEELRH--VPGVVR 180
Query: 371 ILCGGSYRRGKASCGDLDVVIM--HPDRKSHKGF--LSKYVKKLKEMKFLREDLIFSTHS 426
+ GS RR +++ GD+D++ HP+ + F L V+ L + + F
Sbjct: 181 VEMAGSLRRMRSTVGDIDLLAAASHPE-ALMEAFVRLDGVVRILAQGETKSSVEFFDGLR 239
Query: 427 EEVYPRDIYAFGLIAW---TGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRA 483
+++ FG AW TG+ N RLR A ++G+ L + L + G
Sbjct: 240 AQLWVHPPERFG-SAWQYATGSKDHNVRLRERALARGFSLSEHALTRLSDG--------- 289
Query: 484 RTSLKFDTEKEVFDFLGFPWLEPHER 509
+ E+EV+ LG PW+ P R
Sbjct: 290 -VEILCANEEEVYAALGLPWIPPELR 314
>gi|383788361|ref|YP_005472930.1| putative DNA polymerase family X [Caldisericum exile AZM16c01]
gi|381363998|dbj|BAL80827.1| putative DNA polymerase family X [Caldisericum exile AZM16c01]
Length = 574
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 85/329 (25%), Positives = 148/329 (44%), Gaps = 45/329 (13%)
Query: 210 NKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIES---ADQVKGLPGIGKS 265
NK + E F +L + GE+ + +Y +A VIE L IE D++ G+ G+GKS
Sbjct: 3 NKEVAEKFYELAEVAELAGENPFKVKAYLEAARVIENLTIPIEDLAKEDKLDGIKGVGKS 62
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK- 323
+ + I+E + TGK++KLE +K + L +V G+G + LYEK G + L+DL+
Sbjct: 63 IAEKIKEYLETGKITKLEELKKVVPEGLLEL-EKVKGLGAKRVKILYEKLGIKNLEDLEK 121
Query: 324 --NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI----------- 370
E + + G K I I ++ +R L + ++
Sbjct: 122 AAKEHKIRDLEGFGEKTEQKILEGIKSLRDKRTDRFLIGIALPIAESIVNLLSKNTPIEK 181
Query: 371 -ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMK--FLREDLIFSTHSE 427
++C GS RR K + GD+D+++ + F+ Y ++ +K + D S ++
Sbjct: 182 HMIC-GSLRRMKDTIGDIDILVTS----KNPSFVMDYFVQIPFVKEVLAKGDTKSSIITQ 236
Query: 428 E-------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
E V D + + +TG+ N RLR +A K +L++ G+F + G
Sbjct: 237 EGIQVDLRVVENDSFGAAIQYFTGSKNHNVRLREIAIKKNLKLNEYGVFRLD-DNAIIAG 295
Query: 481 VRARTSLKFDTEKEVFDFLGFPWLEPHER 509
V+ E +V++ L W+ P R
Sbjct: 296 VK---------ETDVYEALDLDWIPPEMR 315
>gi|406874088|gb|EKD24116.1| hypothetical protein ACD_81C00106G0008 [uncultured bacterium]
Length = 581
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 126/290 (43%), Gaps = 61/290 (21%)
Query: 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV--RTISLFGEVWGIGPATAQKLY- 312
++ +PG+G S+ + I+E + TG++ E +K V RT+S V G+GP +KLY
Sbjct: 57 IEKIPGVGVSIAEKIEEYIKTGRIQHYEELKKKIPVDLRTLS---AVEGLGPKKIKKLYW 113
Query: 313 EKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI-- 370
E +TL DL+ + +L+ + L D + + ++ +E + G VL V
Sbjct: 114 ELDIKTLADLE-QAALSGA----LNKVDGFGPKSTENIIKGIEFVKTSGGRLVLGNVFPA 168
Query: 371 ----------------ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMK 414
+ GS RR K + GD D++++ D + F K
Sbjct: 169 IAHIKSELEGIKGVEKVSIVGSARRKKETVGDFDLLVVAKDAQPVMDFFVK--------- 219
Query: 415 FLREDLIFSTHSE---------------EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESK 459
+RE + H V ++ Y L+ +TG+ N LR LA K
Sbjct: 220 -MREVIRVHAHGATKSSVRIKSGIDVDIRVVSKESYGAALVYFTGSKAHNVLLRQLAIKK 278
Query: 460 GYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
G +L++ GLF GGK+ + DTE+ +++ LG ++EP R
Sbjct: 279 GLKLNEYGLFRM---KGGKE----EKMVAGDTEEGIYNTLGLEYIEPEMR 321
>gi|384439577|ref|YP_005654301.1| DNA polymerase beta family (X family) [Thermus sp. CCB_US3_UF1]
gi|359290710|gb|AEV16227.1| DNA polymerase beta family (X family) [Thermus sp. CCB_US3_UF1]
Length = 577
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 138/313 (44%), Gaps = 57/313 (18%)
Query: 232 RSFSYYKAIPVIEKLPFKIE-----SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFE 286
R +Y++A + L IE + + LPGIG + + I E + TG+L K H E
Sbjct: 26 RVRAYHQAARTLYDLDIPIEDLARGGKEALLALPGIGPDLAEKILEFLATGRLKK--HEE 83
Query: 287 KDEKV-RTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKT 344
+KV R + V G+GP TA++LY E G +L+ LK +L L LK F K
Sbjct: 84 LAQKVPRGVLAVMAVPGVGPKTARQLYHELGIDSLEGLKA--ALERGDLLRLKGFGPKKA 141
Query: 345 ---------------RIPRHEVEQMERLLQKAGEEV--LPEV--IILCGGSYRRGKASCG 385
R P V + R L EE+ LP V LCG S RR + + G
Sbjct: 142 ERIREGLALAQAASQRRPLGAVLSLARGLL---EEIRRLPGVEKAELCG-SARRYQDTVG 197
Query: 386 DLDVVIMHPD-RKSHKGFL------SKYVK-KLKEMKFLREDLIFSTHSEEVYPRDIYAF 437
DLD ++ + + K FL Y K + + FL+ L V P + +
Sbjct: 198 DLDFLVASLEGERVVKAFLRLPQVGEVYAKGEERATVFLKNGLQVDLR---VVPPESWGA 254
Query: 438 GLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFD 497
GL TG+ + +LR LA+ +G +L + G+F RA L +TE+ V+
Sbjct: 255 GLQYLTGSKGHSIKLRSLAQDRGLKLSEYGVF------------RAGVRLAGETEEGVYA 302
Query: 498 FLGFPWLEPHERN 510
LG P++ P R
Sbjct: 303 ALGLPYIPPPLRE 315
>gi|113913511|gb|ABI48899.1| POL4 [Saccharomyces pastorianus]
Length = 583
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 85/190 (44%), Gaps = 7/190 (3%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIES-ADQVKGLPGIGKSMQD 268
N+ + E +L Y GE R+ Y A +E F I S A+ L IG S+
Sbjct: 189 NELVIEALKRLTKKYEIKGERFRARGYRLAKQSVENCDFDISSGAEAHTKLRNIGPSIAR 248
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK--LYEKGHRTLDDLKNED 326
IQ I+ TG L L E ++ F +G+GP A++ L + K+ D
Sbjct: 249 KIQVILDTGALPGLNDSMGLED--KLNYFKNCYGVGPEIAKRWNLLSYESFCIASKKDPD 306
Query: 327 SLTH--SQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 384
S G Y+DD ++ R+E ++Q A E+ P+ ++ GSY RG + C
Sbjct: 307 DFISDWSVLFGWSYYDDWLHKMSRNECLAHLDVVQNALNEIDPDCLVELQGSYNRGYSKC 366
Query: 385 GDLDVVIMHP 394
GD+D++ P
Sbjct: 367 GDIDLLFFKP 376
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 12/73 (16%)
Query: 438 GLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFD 497
G I +TG+ NR +R+LA KG++L GLF R L+ E ++F+
Sbjct: 513 GRIHYTGSKEYNRWIRILAAQKGFKLTQHGLF------------RDSVLLESFNEYKIFE 560
Query: 498 FLGFPWLEPHERN 510
L ++EP +RN
Sbjct: 561 LLDLKYVEPKDRN 573
>gi|365761819|gb|EHN03448.1| Pol4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 545
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 95/218 (43%), Gaps = 19/218 (8%)
Query: 193 SSHHITDP-------SLLYNPPDLNKN---ITEIFGKLINIYRALGEDRRSFSYYKAIPV 242
+S + DP +LL N KN I E +L Y GE R+ SY A
Sbjct: 157 TSQPVKDPVYSNESTTLLVNNKSKYKNNELIVEALKRLTKKYEVKGEKFRARSYRLAKQS 216
Query: 243 IEKLPFKIESADQV-KGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVW 301
IE F I S ++ L IG S+ IQ I+ TG L L E ++ F +
Sbjct: 217 IENCDFDISSGEEAHTKLRNIGPSIARKIQIILDTGVLPGLNDSIGLED--SLKYFKNCY 274
Query: 302 GIGPATAQKL----YEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHE-VEQMER 356
GIGP A++ +E + E S G Y++D ++ R+E + +ER
Sbjct: 275 GIGPEIAKRWNLLNFESFCSAAKNDPEEFISDWSVLFGWSYYEDWLRKMSRNECLAHLER 334
Query: 357 LLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
+ GE + PE + GSY RG + CGD+D++ P
Sbjct: 335 VKSSLGE-IDPECQVELQGSYNRGYSKCGDIDLLFFKP 371
>gi|336323485|ref|YP_004603452.1| PHP domain-containing protein [Flexistipes sinusarabici DSM 4947]
gi|336107066|gb|AEI14884.1| PHP domain protein [Flexistipes sinusarabici DSM 4947]
Length = 569
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 86/332 (25%), Positives = 150/332 (45%), Gaps = 54/332 (16%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKI----ESADQVKGLPGIGK 264
N +I EI + ED R +Y A + L F I +S +++ + G+GK
Sbjct: 3 NASIAEILEEYAKYLEINNEDFFRVRAYNSAARSVLGLDFNIAEILKSGEELPKIKGVGK 62
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLK 323
++Q HI+EIV +G +LE K + + + ++ G+G A K++ E G +L +L+
Sbjct: 63 NIQGHIEEIVNSGTFHELEEI-KSNTPQILIVMNKIPGVGAKKAFKIHKELGVNSLGELE 121
Query: 324 N---EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIIL-------- 372
E+ L G K + I I ++ RLL A EE ++
Sbjct: 122 YACIENRLAMLDGFGEKSQNKILKNIEYVKLSMQRRLLADA-EETAEKIHSFFESIDYVE 180
Query: 373 ---CGGSYRRGKASCGDLDVVIMHP------DRKSHKGFLSKYVKKLKEMKF------LR 417
GSYRR + DLD+VI+ D+ + +GF + +++ E K L
Sbjct: 181 KYEIAGSYRRKLETVKDLDLVIVAQGESNVLDKIAKEGFFDE-IREGGEKKISAALDGLP 239
Query: 418 EDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGG 477
DL + +D + L +TG+ + RLR +A+SK +++++ G+F G
Sbjct: 240 VDL-------RCFEKDDFYTALHHFTGSKAHHERLRGIAKSKNFKINEYGIF-----QGD 287
Query: 478 KQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
K+ LK +E+E+++ LG ++ P R
Sbjct: 288 KK-------LKVSSEEEIYEILGLHYIPPELR 312
>gi|344201179|ref|YP_004785505.1| PHP domain-containing protein [Acidithiobacillus ferrivorans SS3]
gi|343776623|gb|AEM49179.1| PHP domain protein [Acidithiobacillus ferrivorans SS3]
Length = 576
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 138/334 (41%), Gaps = 51/334 (15%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSF---SYYKAIPVIEKLP----FKIESADQVKGL 259
P LN +I IF ++ ++ ED F +Y A +++ L +ES + + L
Sbjct: 2 PVLNPDIARIFDEIADLLEI--EDANPFRVRAYRNAARLVQGLSNDVKTMVESGEDLTEL 59
Query: 260 PGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY------- 312
PGIG + I EIVTTG S LE EK L +V G+GP + L+
Sbjct: 60 PGIGDDLAKKIIEIVTTGHCSFLEKLEKQTPPALTELL-KVPGLGPKRVKALWHELDVET 118
Query: 313 ---------EKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKA 361
EK R++ K E + + L I + R LQ
Sbjct: 119 VEQLARAAQEKRIRSIPGFGEKTEARIQKTLLAHLAAVPRFPIAIAAPYAAALVRYLQN- 177
Query: 362 GEEVLPEV-IILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY--VKKLKEMKFLRE 418
+P V ++ GS+RRGK + GDLD++ + Y V ++ R
Sbjct: 178 ----IPGVRRVVVAGSFRRGKDTVGDLDILATATADSPVMERFTAYEDVAEVLSQGTTRA 233
Query: 419 DLIFSTHSE-EVYPRDIYAFG--LIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS 475
+I + ++ D A+G L +TG+ N +R + + G ++++ G+F
Sbjct: 234 TVILRNKLQVDLRAVDESAYGAALHYFTGSKTHNIAIRRMGQDMGLKVNEYGIF------ 287
Query: 476 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
R + + DTE+ V+ +G P++EP R
Sbjct: 288 ------RGKERIAGDTEESVYATVGLPYIEPELR 315
>gi|193222378|emb|CAL62495.2| Putative DNA polymerase X [Herminiimonas arsenicoxydans]
Length = 576
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 83/329 (25%), Positives = 143/329 (43%), Gaps = 47/329 (14%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESADQVK----GLPGIGK 264
N ++ IF ++ ++ G++ R +Y A + L F +++ + K LPGIG
Sbjct: 5 NTDVATIFNQIADLLEIKGDNPFRIRAYRNAARTLNTLAFSVQTMVKEKRNLTDLPGIGI 64
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLK 323
+ I EIVTTG + E + E +I + G+GP + LY E+ +TLD L
Sbjct: 65 DLAGKIVEIVTTGTCALREQLHR-ELPSSIHELLNLPGLGPKRVKALYQERNIQTLDQLY 123
Query: 324 NEDS-----------LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGE-----EVLP 367
+ + QR+ L+ +++ R+ ++ E + AG + P
Sbjct: 124 SSACNGQIRNVPGFGIRTEQRI-LEAIRAQQSKKKRYRLDLAETI---AGSLLKYFQASP 179
Query: 368 EV-IILCGGSYRRGKASCGDLDVVI--MHPDRK-SHKGFLSKYVKKLKEMKFLREDLIFS 423
V I GS+RR + + GDLD++I HPD H + V+ L + K R ++
Sbjct: 180 HVRKIDIAGSFRRRQETVGDLDILISSSHPDSVIQHFIKFEEIVQVLAQGK-TRASVVLR 238
Query: 424 THSE---EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
+ V + L TG+ N +R LA+ +G ++++ G+F G
Sbjct: 239 QGMQVDLRVVANVSFGAALYYSTGSKAHNIAVRTLAQKRGLKINEYGVFSGAQRIAG--- 295
Query: 481 VRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+TE VF +G P++EP R
Sbjct: 296 ---------ETELTVFQSVGLPYIEPELR 315
>gi|401838825|gb|EJT42265.1| POL4-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 579
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 95/218 (43%), Gaps = 19/218 (8%)
Query: 193 SSHHITDP-------SLLYNPPDLNKN---ITEIFGKLINIYRALGEDRRSFSYYKAIPV 242
+S + DP +LL N KN I E +L Y GE R+ SY A
Sbjct: 157 TSQPVKDPVYSNESTTLLVNNRSKYKNNELIVEALKRLTKKYEVKGEKFRARSYRLAKQS 216
Query: 243 IEKLPFKIESADQV-KGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVW 301
IE F I S ++ L IG S+ IQ I+ TG L L E ++ F +
Sbjct: 217 IENCDFDISSGEEAHTKLRNIGPSIARKIQIILDTGVLPGLNDSIGLED--SLKYFKNCY 274
Query: 302 GIGPATAQKL----YEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHE-VEQMER 356
GIGP A++ +E + E S G Y++D ++ R+E + +ER
Sbjct: 275 GIGPEIAKRWNLLNFESFCSAAKNDPEEFISDWSVLFGWSYYEDWLRKMSRNECLAHLER 334
Query: 357 LLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
+ GE + PE + GSY RG + CGD+D++ P
Sbjct: 335 VKSSLGE-IDPECQVELQGSYNRGYSKCGDIDLLFFKP 371
Score = 39.7 bits (91), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 12/73 (16%)
Query: 438 GLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFD 497
G I +TG+ NR +R+LA KG +L GLF R L+ E+ +F+
Sbjct: 508 GRIHYTGSKEYNRWIRILAAQKGLKLTQHGLF------------RDNILLESFNERRIFE 555
Query: 498 FLGFPWLEPHERN 510
L ++EP +RN
Sbjct: 556 LLNLKYVEPKDRN 568
>gi|448377467|ref|ZP_21560163.1| PHP domain protein [Halovivax asiaticus JCM 14624]
gi|445655411|gb|ELZ08256.1| PHP domain protein [Halovivax asiaticus JCM 14624]
Length = 591
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 94/348 (27%), Positives = 140/348 (40%), Gaps = 65/348 (18%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESA------DQVKGLPGIG 263
N + F + ++ A + + +Y +A I P I A D V + G+G
Sbjct: 4 NAELAARFEEFADLLEADDVEYKPRAYRRAAENILAHPVPIAEAVESGDEDAVDDIEGVG 63
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDL 322
++ I E V TG++ +LE + V IS V G+GP T LY E G TLDDL
Sbjct: 64 DAISSKIVEYVETGEIEELEDLRAELPV-DISDLTRVEGVGPKTVGTLYRELGIETLDDL 122
Query: 323 KNEDSLTHSQRLG----------LKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIIL 372
+ Q + L+ D +T RH V + L ++VL + +
Sbjct: 123 ETAAEAGEIQDVKGFGAKTEQNILENIDFARTVGQRHLVGEARPL----ADDVLGYLEGI 178
Query: 373 CG-------GSYRRGKASCGDLDVVIM--HPDRKSHKGFL----------SKYVKKLKEM 413
G GS RR + + GD+DV+ PD FL S K +
Sbjct: 179 AGVERCEVAGSIRRWRETIGDVDVLAATDEPDAVVDD-FLAWDSIDDEIESGPAKASVRV 237
Query: 414 KFLREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLF---- 469
+R DL V P D + L +TG+ N RLR A +G +L++ G F
Sbjct: 238 GEVRVDLRL------VVP-DEFGSALQYFTGSKAHNVRLRNYAIDRGMKLNEYGAFDVSK 290
Query: 470 --------PATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
P G G + G R + +TE+ ++D LG PW+ P R
Sbjct: 291 LDADPDADPQHVGGGQRVGER----VAGETEESMYDALGLPWIPPELR 334
>gi|406936466|gb|EKD70180.1| hypothetical protein ACD_46C00611G0005 [uncultured bacterium]
Length = 572
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 84/325 (25%), Positives = 138/325 (42%), Gaps = 39/325 (12%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVI----EKLPFKIESADQVKGLPGIGK 264
N I IF K+ N+ GE+ R +Y A VI + + IE D + LPGIGK
Sbjct: 5 NTEIAAIFSKVANLLDIKGENPFRIRAYRNAARVIYGQSKSIAKMIEDNDDLTLLPGIGK 64
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLDDLK 323
+ I+ IV TG+L L EK ++ ++ G+GP Q +Y K +T DLK
Sbjct: 65 DLAGKIKTIVQTGQLPLLTQMEK-RLPPVLNELMQIEGLGPRRIQIIYRKLKVKTSADLK 123
Query: 324 NEDSLTHSQRLGLKYFDDIKTRIPR--HEVEQMERLLQKAGEEVLPEVIIL--------- 372
Q++ + D I +I R V Q + ++ A + + II
Sbjct: 124 LAIEKGRLQKMK-GFGDKIAQKILRGIEHVSQYSKRIKLADAFPIVDSIIHYLKQEKNIS 182
Query: 373 ---CGGSYRRGKASCGDLDVVIM--HPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 427
C GS+RR K + GDLD++ +P++ V+ + R + + +
Sbjct: 183 KVECAGSFRRRKETVGDLDILATGKNPEKIIQHFVEFDEVENILSKGSTRSTVRLRSGIQ 242
Query: 428 ---EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRAR 484
V Y L+ +TG+ N +R +A K ++++ G+F T G+
Sbjct: 243 VDLRVVAAKSYGAALLYFTGSKEHNIAIRRIALEKKLKINEYGVFKKTKQIAGQ------ 296
Query: 485 TSLKFDTEKEVFDFLGFPWLEPHER 509
TE E + +G P+++P R
Sbjct: 297 ------TETESYRQVGLPYIDPELR 315
>gi|312143800|ref|YP_003995246.1| PHP domain-containing protein [Halanaerobium hydrogeniformans]
gi|311904451|gb|ADQ14892.1| PHP domain protein [Halanaerobium hydrogeniformans]
Length = 575
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 148/337 (43%), Gaps = 60/337 (17%)
Query: 210 NKNITEIFGKLINIYRALGE-DRRSFSYYKAIPVIEKLPFKIES---ADQVKGLPGIGKS 265
NK I +I + ++ GE D + +Y A IE L I S D++K + GIG
Sbjct: 6 NKEIAKILNEFADLLAIKGENDFKIRAYSNAARKIESLSDDISSLAAEDKLKEIKGIGSG 65
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKN 324
+ + + EI+ G + ++E K E + + G+GP TA + Y E G L L+N
Sbjct: 66 IAETLMEILENGIIEEMETI-KAELPHGVVEMTNIPGLGPKTAHRFYYELGIEDLISLEN 124
Query: 325 -----------------EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
E+ L H + KY D I I ++ ++ + E+V
Sbjct: 125 ALKEAKVRELKGFGKKSEEKLLHGLKNYEKYVDKI---ILSEALKTAGIIIAEIKEKVES 181
Query: 368 EV---IILCGGSYRRGKASCGDLDVVIM--HPDRKS----HKGFLSKYVK------KLKE 412
E I +CG S RRGK GDLD++I P+ S F ++ + ++
Sbjct: 182 EYFSQIEVCGSS-RRGKEMTGDLDILIATEKPEELSPLLTQLDFAAEIIGAGDTKVSIRT 240
Query: 413 MKFLREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPAT 472
K ++ D F +E+ +P ++ F TG+ N R+R LA+ K +L++ GL
Sbjct: 241 RKGIQTD--FRLVAEDEFPSALHYF-----TGSQAHNVRMRQLAKDKNLKLNEYGLIRE- 292
Query: 473 YGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
G K+ + ++E ++F+ LG ++ P R
Sbjct: 293 --DGSKE--------ELNSESDIFNILGLDYIIPELR 319
>gi|348029395|ref|YP_004872081.1| DNA polymerase X [Glaciecola nitratireducens FR1064]
gi|347946738|gb|AEP30088.1| DNA polymerase X [Glaciecola nitratireducens FR1064]
Length = 573
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 74/324 (22%), Positives = 133/324 (41%), Gaps = 37/324 (11%)
Query: 210 NKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKI----ESADQVKGLPGIGK 264
N +I IF ++ +I G + R +Y KA + + + E + LP IG
Sbjct: 5 NNDIANIFEEIADILTLQGANFYRIRAYRKAAAQLRDMSVDVAEYVEKGQDLSQLPAIGT 64
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL-YEKGHRTLDDL- 322
+ I EI+ G+ S LE + L + G+GP L + G T + L
Sbjct: 65 KLAQKIVEIIQQGRCSALETLREQSPFGLTELL-HIPGLGPKRVNALVHVLGVHTQEQLL 123
Query: 323 --KNEDSLTHSQRLGLKYFDDI----------KTRIPRHEVEQMERLLQKAGEEVLPEVI 370
+ ++ LG K +I KTR+ R +Q + +++
Sbjct: 124 QAAKDGRVSSVAGLGQKIQANIIHTIESNLKRKTRLSRAIAKQYAEPILAYLKQIQGVEH 183
Query: 371 ILCGGSYRRGKASCGDLDVVIM--HPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE- 427
+ GSYRR K + GD+D+++ + D +H V+ + R +I + +
Sbjct: 184 AVIAGSYRRCKETVGDIDILVTTGNEDSVTHAFINYDQVRDVLSTGPTRSSVILYSGLQV 243
Query: 428 --EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRART 485
V P D Y L +TG+ N LRL A+++G ++++ G++ + +
Sbjct: 244 DLRVVPNDCYGAALYYFTGSRSHNIALRLRAKARGLKINEYGVY------------KDKR 291
Query: 486 SLKFDTEKEVFDFLGFPWLEPHER 509
+ +TE+ V + PW+ P R
Sbjct: 292 HIAGETEESVLAAIDLPWIPPELR 315
>gi|307106980|gb|EFN55224.1| hypothetical protein CHLNCDRAFT_134478 [Chlorella variabilis]
Length = 666
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 87/393 (22%), Positives = 148/393 (37%), Gaps = 110/393 (27%)
Query: 210 NKNITEIFGKLINIYRALGED--------------RRSFSYYKAIPVIEKLPFKIESADQ 255
N+ + + +L RAL +D R+ Y +A + +K++ +
Sbjct: 290 NEPVVKALSELSRYERALHDDYFTVQETGKQDQVNHRALRYSRAASAVRACAYKLQPNLR 349
Query: 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEK-------DEKVR---------TISLFGE 299
LP +G I++I+ +G LE F + D K R T +LF
Sbjct: 350 GGQLPFVGDVTASQIKDILESGTCQALECFRRVADVAVTDSKGRRRRDSVGGATRALFHS 409
Query: 300 VWGIGPATAQKLYEKGHRTLDDLK------------NEDSLTHSQRLGLKYFDDI-KTRI 346
+ G+G A++ ++ G R +D++ LT QR L + D+ + I
Sbjct: 410 LPGVGVQAAKRWWDLGCRCFEDVELAAEPGGPLGQGGAFPLTRDQRFSLGHRGDLLEVAI 469
Query: 347 PRHEVEQMERLLQKAGEEVLPE--VIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLS 404
P EV +M +Q+ E V + L GG R A+ D D + HP + +S
Sbjct: 470 P-GEVREMLVAVQQGLEAVSHPGWRVELVGGGRR--SAAAHDADFLATHPSQP-----VS 521
Query: 405 KYVKKLKEMKFLREDLI---------------FSTHSEEV-------YPRDIYAFGLIAW 442
V++L++ L+ F T S +V P D + F L+ W
Sbjct: 522 GVVRRLRDRLVAAGRLVPPERGICWFDHIYGVFRTASGKVRRMDVIIAPPDEFCFALVGW 581
Query: 443 TGNDVLNRRLRLLAESKGYRLDDTGL-------------------------FPATYGSGG 477
G+ R +R A+ +G L+ L +P +G G
Sbjct: 582 IGSRTYLRFMRAFAKDQGLYLNSHRLMQKQGNESFVVPDERSPLDKAGQERWPPGWGPG- 640
Query: 478 KQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+ + E++VF+ L P+ EPHER+
Sbjct: 641 ---------RRVECERDVFELLQVPYREPHERD 664
>gi|194333788|ref|YP_002015648.1| PHP domain-containing protein [Prosthecochloris aestuarii DSM 271]
gi|194311606|gb|ACF46001.1| PHP domain protein [Prosthecochloris aestuarii DSM 271]
Length = 574
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 138/328 (42%), Gaps = 43/328 (13%)
Query: 209 LNKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESADQVKG------LPG 261
+N +I IF K+ ++ L + R +Y A I L + AD V LPG
Sbjct: 4 VNADIETIFRKVADLLDILNANPFRIRAYRNAAATIAGLSRDV--ADMVSRNEDLTRLPG 61
Query: 262 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE----KGHR 317
IG+ + I EIV TG L L+ EK+ + S E+ G+GP + LY+ +
Sbjct: 62 IGRDLSKKILEIVETGHLRFLDTLEKNAHA-SFSELMEIPGLGPRKVKALYDALDIRNIE 120
Query: 318 TLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVLPEVIILC- 373
L++ + + G K +I I R + E+ R+ +A E L + C
Sbjct: 121 ELEEAAEQGRIALVAGFGKKSQQNILKEIVRRK-ERSRRITYQAAMFAAEPLLSYLRACD 179
Query: 374 -------GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY--VKKLKEMKFLREDLIFST 424
GS+RR + + GDLD+++ ++Y V + R ++ +
Sbjct: 180 DITQVAIAGSFRRCRETIGDLDLLVTCRRGADAVRHFTRYDGVADILSSGNTRSSVVLHS 239
Query: 425 HSE---EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGV 481
+ V P+ + L+ +TG+ N LR LA +G +L++ GLF GK
Sbjct: 240 GLQVDLRVVPQVSWGAALLYFTGSWQHNIALRKLAIGRGLKLNEYGLFREHERIAGK--- 296
Query: 482 RARTSLKFDTEKEVFDFLGFPWLEPHER 509
+EKEV+ L P++ P R
Sbjct: 297 ---------SEKEVYACLDIPFIAPELR 315
>gi|398356135|ref|YP_006529462.1| DNA polymerase/3'-5' exonuclease PolX [Sinorhizobium fredii USDA
257]
gi|399995354|ref|YP_006575592.1| K02347 DNA polymerase (family X) [Sinorhizobium fredii HH103]
gi|365182201|emb|CCE99051.1| K02347 DNA polymerase (family X) [Sinorhizobium fredii HH103]
gi|390131382|gb|AFL54762.1| DNA polymerase/3'-5' exonuclease PolX [Sinorhizobium fredii USDA
257]
Length = 611
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 82/335 (24%), Positives = 132/335 (39%), Gaps = 39/335 (11%)
Query: 200 PSLLYNPPDLNKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIES----AD 254
P L+ N +I +F ++ ++ + R +Y +A IE LP +
Sbjct: 31 PDHLHTMTVHNADIAALFNRMADLLEIEAANPFRIRAYRRAASTIEDLPENVAQMMAEGR 90
Query: 255 QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK 314
+ LPGIG+ + I E V TG L LE E ++ + G+GP L++
Sbjct: 91 SLSDLPGIGEDLAGKIAEFVETGHLKSLEEVEA-RTPSALAALTAIPGLGPKRVHVLHQS 149
Query: 315 -GHRTLDDLKNEDSLTHSQRLGLKYFDDIKTR----IPRHE----------VEQMERLLQ 359
G TL+ L + H R ++ I+T+ I +H E R L
Sbjct: 150 LGITTLEQLAKA-AREHRVRELPRFSAAIETKILDEIAKHRTAEKRFKISTAEDFARGLV 208
Query: 360 KAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY--VKKLKEMKFLR 417
L L GS+RR K + GDLDV+ D + Y V+ + R
Sbjct: 209 DYLRSALGITQTLVAGSFRRRKETVGDLDVLATCADGPAAIEHFVAYDEVETVLSKGPTR 268
Query: 418 EDLIFSTHSE---EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYG 474
++ + V + Y L +TG+ N +R + KG++L++ G+F
Sbjct: 269 STVLLKAGIQVDLRVVAEESYGAALHYFTGSKAHNIAVRKRIQDKGWKLNEYGIFDGEKR 328
Query: 475 SGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
GG+ TE+EVF P++EP R
Sbjct: 329 IGGR------------TEEEVFRAADLPYIEPELR 351
>gi|397773040|ref|YP_006540586.1| PHP domain protein [Natrinema sp. J7-2]
gi|397682133|gb|AFO56510.1| PHP domain protein [Natrinema sp. J7-2]
Length = 583
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 80/325 (24%), Positives = 140/325 (43%), Gaps = 25/325 (7%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPF----KIESADQ--VKGLPGIG 263
N + F + ++ A G + + +Y +A I P +IE+ D+ V+ + G+G
Sbjct: 4 NAELAARFEEFADLLEADGVEYKPRAYRRAAENIRAHPSPIADRIEAGDREAVENIDGVG 63
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDL 322
++ I E V TG++ +LE + + I+ + G+GP TA KLY E G TLDDL
Sbjct: 64 DAISSKIVEYVETGEIDELEALRAELPI-DIAAITRIEGVGPKTAGKLYRELGIETLDDL 122
Query: 323 KNEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVLP-----EVII 371
+ Q + G K +I + +LL +A ++VL +
Sbjct: 123 ETVAEAGEVQEIKGFGPKTEQNILENLEFARTVGQRQLLGEARPLADDVLAFLESVPAVD 182
Query: 372 LC--GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEV 429
C GS RR + + GD+DV+ D ++ + E++ E V
Sbjct: 183 RCEVAGSIRRWRETVGDVDVLAATADGEAVVERFVAWESVDDEIESGPEKASVRVGESRV 242
Query: 430 YPRDI----YAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRART 485
R + + L +TG+ N LR A +G +L++ G F + + + R
Sbjct: 243 DLRVVVPAEFGSALQYFTGSKDHNVSLRNYAIDRGMKLNEYGAFNVSDIADHEADQRIGD 302
Query: 486 SLKFDTEKEVFDFLGFPWLEPHERN 510
+ +TE+ +++ LG PW+ P R
Sbjct: 303 RVAGETEEGMYEALGLPWIPPELRT 327
>gi|288818571|ref|YP_003432919.1| DNA polymerase beta family protein [Hydrogenobacter thermophilus
TK-6]
gi|384129325|ref|YP_005511938.1| PHP domain-containing protein [Hydrogenobacter thermophilus TK-6]
gi|288787971|dbj|BAI69718.1| DNA polymerase beta family protein [Hydrogenobacter thermophilus
TK-6]
gi|308752162|gb|ADO45645.1| PHP domain protein [Hydrogenobacter thermophilus TK-6]
Length = 580
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 91/328 (27%), Positives = 148/328 (45%), Gaps = 41/328 (12%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIP-VIEKLPFKIES---ADQVKGLPGIGKS 265
NK I EIF ++ +I LG++ S Y+ + ++ +L +E + ++ +PGIG S
Sbjct: 4 NKEIAEIFERMADILEFLGDNPYRISTYRRVANILSELNVDVEDLVKSGKIHHIPGIGAS 63
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDL-- 322
+ I E + TGK+SK E + + L V IGP T + YE+ G RT DD
Sbjct: 64 SVEKILEYLRTGKISKYEELKGKVPEDLLELMN-VPSIGPKTLKLAYERLGIRTKDDFIR 122
Query: 323 -KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVLP------EVI-- 370
L G K +I I E + L +A G+E L ++I
Sbjct: 123 AVRSGMLATLPGFGEKKLQNIMRGIELWEKSKERMTLIEAFEIGQEYLSYMKRLGDIIER 182
Query: 371 ILCGGSYRRGKASCGDLDVVI--MHPD-RKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 427
I GS RR K + GD+D+++ MH + K H+ F+S K +K + + ++
Sbjct: 183 IELAGSLRRRKETVGDIDMLVSAMHENWSKIHEHFVSFPDVKDVLLKGETKSSVVLKNAR 242
Query: 428 EVYPRDI----YAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS--GGKQGV 481
+V R + + L +TG+ N R+R +A+ KG ++ + G+F A GGK
Sbjct: 243 QVDLRTVEPHQWGAALQYFTGSKEHNIRVRDIAKMKGLKVSEYGVFRADTDQWIGGK--- 299
Query: 482 RARTSLKFDTEKEVFDFLGFPWLEPHER 509
+E+EV+ +G P R
Sbjct: 300 ---------SEEEVYALIGMQTPPPEIR 318
>gi|448337012|ref|ZP_21526097.1| PHP domain protein [Natrinema pallidum DSM 3751]
gi|445627007|gb|ELY80339.1| PHP domain protein [Natrinema pallidum DSM 3751]
Length = 583
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 82/325 (25%), Positives = 141/325 (43%), Gaps = 25/325 (7%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPF----KIESADQ--VKGLPGIG 263
N + F + ++ A G + + +Y +A I P +IE+ D+ V+ + G+G
Sbjct: 4 NAELAARFEEFADLLEADGVEYKPRAYRRAAENIRAHPSPIADRIEAGDREAVETIDGVG 63
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDL 322
++ I E V TG++ +LE + + I+ + G+GP TA KLY E G TLDDL
Sbjct: 64 DAISSKIVEYVETGEIDELEALRAELPI-DIADITRIEGVGPKTAGKLYRELGIETLDDL 122
Query: 323 KNEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVL------PEVI 370
+ Q + G K +I + +LL +A ++VL PEV
Sbjct: 123 EAAAEAGEVQEVKGFGPKTERNILENLEFARTVGQRQLLGEARPLADDVLAFLESVPEVD 182
Query: 371 -ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEV 429
GS RR + + GD+DV+ D ++ + E++ E V
Sbjct: 183 RCEVAGSIRRWRETIGDVDVLAATADGEAVVERFVAWDSVDDEIESGPEKASVRVGESRV 242
Query: 430 YPRDI----YAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRART 485
R + + L +TG+ N LR A +G +L++ G F + + + R
Sbjct: 243 DLRVVVPAEFGSALQYFTGSKDHNVSLRNYAIDRGMKLNEYGAFDVSAIADHEADQRIGD 302
Query: 486 SLKFDTEKEVFDFLGFPWLEPHERN 510
+ +TE+ +++ LG PW+ P R
Sbjct: 303 RVAGETEEGMYEALGLPWIPPELRT 327
>gi|134106753|ref|XP_777918.1| hypothetical protein CNBA3870 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260618|gb|EAL23271.1| hypothetical protein CNBA3870 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 264
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 71/128 (55%), Gaps = 6/128 (4%)
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--- 326
I ++VT + +LE D+K + + F + G G A+ E+G TL+DL +
Sbjct: 15 IYDLVTKKFVPRLEAL--DDKWKAMVKFNRIHGFGKIRARAFAEEGIETLNDLMIAEGGR 72
Query: 327 -SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
S++ +Q+L ++Y +++ IPR EVE+ + +++ A P++ GSYRRG+
Sbjct: 73 FSISEAQKLAIQYHEEMDVMIPRAEVEEFDGIIKDALRREDPKLNFAIMGSYRRGENLSS 132
Query: 386 DLDVVIMH 393
D+DVV+ H
Sbjct: 133 DMDVVVWH 140
>gi|448346157|ref|ZP_21535045.1| PHP domain protein [Natrinema altunense JCM 12890]
gi|445633167|gb|ELY86367.1| PHP domain protein [Natrinema altunense JCM 12890]
Length = 583
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 82/325 (25%), Positives = 140/325 (43%), Gaps = 25/325 (7%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPF----KIESADQ--VKGLPGIG 263
N + F + ++ A G + + +Y +A I P +IE+ D+ V+ + G+G
Sbjct: 4 NAELAARFEEFADLLEADGVEYKPRAYRRAAENIRAHPSPIADRIEAGDREAVENIDGVG 63
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDL 322
++ I E V TG + +LE + + I+ + G+GP TA KLY E G TLDDL
Sbjct: 64 DAISSKIVEYVETGGIDELEALRAELPI-DIADITRIEGVGPKTAGKLYRELGIETLDDL 122
Query: 323 KNEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVL------PEVI 370
+ Q + G K +I + +LL +A ++VL PEV
Sbjct: 123 EAAAEAGEVQEVTGFGPKTEQNILENLEFARTVGQRQLLGEARPLADDVLAFLESVPEVD 182
Query: 371 -ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEV 429
GS RR + + GD+DV+ D ++ + E++ E V
Sbjct: 183 RCEVAGSIRRWRETIGDVDVLAATADGEAVVERFVAWDSVDDEIESGPEKASVRVGESRV 242
Query: 430 YPRDI----YAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRART 485
R + + L +TG+ N LR A +G +L++ G F + + + R
Sbjct: 243 DLRVVVPAEFGSALQYFTGSKDHNVSLRNYAIDRGMKLNEYGAFDVSDIADHEADQRIGD 302
Query: 486 SLKFDTEKEVFDFLGFPWLEPHERN 510
+ +TE+ +++ LG PW+ P R
Sbjct: 303 RVAGETEEGMYEALGLPWIPPELRT 327
>gi|156740035|ref|YP_001430164.1| phosphotransferase domain-containing protein [Roseiflexus
castenholzii DSM 13941]
gi|156231363|gb|ABU56146.1| PHP domain protein [Roseiflexus castenholzii DSM 13941]
Length = 580
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 85/324 (26%), Positives = 138/324 (42%), Gaps = 36/324 (11%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKI---ESADQVKGLPGIGKS 265
N +I E+F + ++ L EDR R +Y +A VI LP + + +++ +PG+GK+
Sbjct: 7 NHDIAEVFSAIADLMEILDEDRFRVQAYRRAGDVIRHLPAPLATYRARGELEQIPGVGKA 66
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLK- 323
+ + I E++ TG+L + L V GIGP TA +LY E G +L +LK
Sbjct: 67 IAEKIGELLDTGELPYYNRLREKVPPGVRELL-RVPGIGPRTAGRLYRELGITSLAELKV 125
Query: 324 --NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKA--GEEVLPEVIILC------ 373
L + G K D I I E ++ LL A E L +
Sbjct: 126 AAEAGRLAALKGFGAKTIDSILQGISAAERQERRMLLAHAIDSAEALINALRAAVPALSQ 185
Query: 374 ---GGSYRRGKASCGDLDVVIMHPDRKS-HKGF-LSKYVKKLKEMKFLREDLIFSTHSEE 428
GS RRG+ + GDLD++ D + + F + V +++ + ++ +
Sbjct: 186 AAYAGSLRRGRPTVGDLDILAAADDAPAVVRAFTMLPLVARVESAGDEKASILLHNGMQA 245
Query: 429 ---VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRART 485
P ++ L +TG+ N R LA ++G + G A T
Sbjct: 246 DLIAVPPGMWGSALQHFTGSKAHNIHFRELALAQGLSFSEHGFRRADG-----------T 294
Query: 486 SLKFDTEKEVFDFLGFPWLEPHER 509
L TE+EV+ +G PW+ P R
Sbjct: 295 LLTCATEEEVYAAIGLPWIPPELR 318
>gi|170090083|ref|XP_001876264.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164649524|gb|EDR13766.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 446
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 86/166 (51%), Gaps = 12/166 (7%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQE-IVTTGKLSKLEHFEKDE-KVR 292
++ AI VI L + I S QV + GIG + + I + ++ G L+ +K+ + R
Sbjct: 76 AFVNAIKVISNLDYPIHSGKQVSAIHGIGAGIANRINDFLIEEGHLND----QKEALQTR 131
Query: 293 TISLFGEVWGIGPATAQKLYEKGHRTLDDL---KNEDSLTHSQRLGLKYFDDIKTRIPRH 349
+S + GIG A+ L + G + DL K L+ +Q +G+KY ++ + R
Sbjct: 132 ALSELLRIPGIGRIKAKALVDAGCMGIADLVAQKYTHLLSPTQLIGIKYMKHLERPVRRE 191
Query: 350 EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
E +Q+ L+ E + P+ I+ G +RRG ++ ++ V+++HPD
Sbjct: 192 EADQVIDFLR---ENLCPKYEIIVVGDHRRGASTSLEISVILLHPD 234
>gi|269987017|gb|EEZ93292.1| PHP domain protein [Candidatus Parvarchaeum acidiphilum ARMAN-4]
Length = 568
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 81/327 (24%), Positives = 142/327 (43%), Gaps = 44/327 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP---FKIESADQVKGLPGIGKSM 266
NK++ E + +I G +Y A I L KI ++ L G+GKS+
Sbjct: 4 NKDLAEKLNNIADILELEGVKWEPRAYRTAALTISSLSEDINKIYKEGKLLSLEGVGKSI 63
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK-- 323
+ I+E + GK+SK E ++ + F ++ G+GP LY+ G R + DLK
Sbjct: 64 ANSIEEYLQNGKISKYEKLKEKYPI-DFETFRKIRGLGPKRVYALYKALGIRDIKDLKEA 122
Query: 324 -NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLL-------------QKAGEEVLPEV 369
+++ + G K ++I+ + + +RLL + V V
Sbjct: 123 LENHKISNIEGFGEKSEEEIRKNLQSFMTVKNDRLLLGYVIDYTNLILKKLRNSNVFERV 182
Query: 370 IILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSK-------YVKKLKEMKFLREDLIF 422
I GS RR K + GD+D++ + + F SK VK K K E I
Sbjct: 183 EI--AGSLRRRKETIGDVDILAISDKPEIGMDFFSKIDEVTGIVVKGPK--KTTVELSIG 238
Query: 423 STHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVR 482
+T + ++ + + +TGN N ++R +A SKG +L++ GLF R
Sbjct: 239 TTCDIRILSKESFGAAMQYFTGNKDHNVKIRKIAISKGLKLNEYGLF------------R 286
Query: 483 ARTSLKFDTEKEVFDFLGFPWLEPHER 509
++++ E+E+++ LG ++ P R
Sbjct: 287 GKSAIAGKDEEEIYNKLGMEFIPPELR 313
>gi|433639242|ref|YP_007285002.1| DNA polymerase IV (family X) [Halovivax ruber XH-70]
gi|433291046|gb|AGB16869.1| DNA polymerase IV (family X) [Halovivax ruber XH-70]
Length = 591
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 92/347 (26%), Positives = 140/347 (40%), Gaps = 63/347 (18%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESA------DQVKGLPGIG 263
N + F + ++ A + + +Y +A I P I A D V + G+G
Sbjct: 4 NAELAARFEEFADLLEADDVEYKPRAYRRAAENILSHPVPIAEAVESGDEDAVDDIEGVG 63
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDL 322
++ I E V TG++ +LE + V I+ V G+GP T LY E G TLDDL
Sbjct: 64 DAISSKIVEYVETGEIEELEDLRAELPV-DIADLTRVEGVGPKTVGTLYRELGIETLDDL 122
Query: 323 KNEDSLTHSQRLG----------LKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEV--- 369
+ Q + L+ D +T RH V + L ++VL +
Sbjct: 123 EAAAEAGEIQDVKGFGAKTEQNILENIDFARTVGQRHLVGEARPL----ADDVLAYLEGI 178
Query: 370 --IILC--GGSYRRGKASCGDLDVVIMHPDRKS-HKGFL----------SKYVKKLKEMK 414
+ C GS RR + + GD+DV+ D + FL S K +
Sbjct: 179 ADVERCEVAGSIRRWRETIGDVDVLAATDDPDAVVDDFLAWDSIDDEIESGPAKASVRVG 238
Query: 415 FLREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLF----- 469
+R DL V P D + L +TG+ N RLR A +G +L++ G F
Sbjct: 239 EVRVDLRL------VVP-DEFGSALQYFTGSKAHNVRLRNYAIDRGMKLNEYGAFDVSEL 291
Query: 470 -------PATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
P G G + G R + +TE+ ++D LG PW+ P R
Sbjct: 292 ESDPDADPQHVGGGQRVGER----VAGETEESMYDALGLPWIPPELR 334
>gi|421614601|ref|ZP_16055654.1| phosphotransferase domain-containing protein [Rhodopirellula
baltica SH28]
gi|408494610|gb|EKJ99215.1| phosphotransferase domain-containing protein [Rhodopirellula
baltica SH28]
Length = 589
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/347 (22%), Positives = 143/347 (41%), Gaps = 74/347 (21%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKL--PFKIESAD---QVKGLP 260
P N + +F +L + GE+ R +Y I L P ++D + LP
Sbjct: 12 PMDNSAVAAVFEELAELLEFRGENPFRIRAYQNGARAIRDLDEPIANLASDPERDLSKLP 71
Query: 261 GIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTL 319
GIGK++ + + ++ TG L +LE ++ + + G+G A KL E+ G +L
Sbjct: 72 GIGKTIAEKTKVLLETGSLPQLEEL-REAVPEVVIQMSRIPGLGAKKASKLREELGIESL 130
Query: 320 DDL-----------------KNEDSL--------THSQRLGLKYFDDIKTRIPRH----- 349
+DL K E ++ S+R+ DD+ I +H
Sbjct: 131 EDLAAACREGRVASLKGFAKKTEAAILDGMAIAKAASERIYWSKADDLTREIGKHMQACD 190
Query: 350 EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKK 409
+EQME GSYRRG+ + GDLD++ + DR++ L+ +
Sbjct: 191 AIEQME-----------------WAGSYRRGRDTVGDLDLLAVASDREAAMDHLANFPGL 233
Query: 410 LKEMKFLREDLIFSTHSEEVYPRDI-------YAFGLIAWTGNDVLNRRLRLLAESKGYR 462
+ + R D S + + D+ + L +TG+ N +R +A+ G +
Sbjct: 234 VSVIG--RGDTKMSIRVGKAFQVDMRLVDAEEFGAALQYFTGSQAHNIHVRRIAKDHGLK 291
Query: 463 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+++ G+F + + + TE++V+ +G PW+ P R
Sbjct: 292 INEYGVFK----------LDDESRVAGATEEDVYQSIGLPWIAPELR 328
>gi|390603160|gb|EIN12552.1| Nucleotidyltransferase [Punctularia strigosozonata HHB-11173 SS5]
Length = 388
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/295 (24%), Positives = 115/295 (38%), Gaps = 71/295 (24%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV--- 291
++ AI I L I S +Q K L GIG + I + L+ +D
Sbjct: 22 AFKLAIRTINALEDPITSGEQAKDLRGIGPRIAARIDQF--------LQELNRDVSHESH 73
Query: 292 ---------------RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN----EDSLTHSQ 332
R ++ GIGP+ A+ L G ++ L+ ++ LT SQ
Sbjct: 74 HSSSAAAESEDVIADRAAKELQQITGIGPSKARTLVAAGCTSIAQLRASPELKNKLTRSQ 133
Query: 333 RLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIM 392
R+ L + +K + R + EQ +L++ ++ GSYRRG A D+D++I+
Sbjct: 134 RIALDFHGQLKKGVTRAQSEQALKLVRMCVPSSCEAHLV---GSYRRGAAQPSDIDILIL 190
Query: 393 HPD---------------RKSHKGFLSKYVKKLKE------------------MKFLRED 419
PD R+ G L++ +K L+ + L D
Sbjct: 191 DPDMPAPSSPIPQRASAGRRRPTGVLAETIKALERDESGAAVTISGGLTQWQGIVRLNND 250
Query: 420 LIFSTHSEE-----VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLF 469
T + VYP++ A L+A TG+ R R A +G L+D GL+
Sbjct: 251 QHARTPAYRRMDIWVYPKECAAAALLARTGDVEFVRDTRERASRRGLHLNDYGLW 305
>gi|116619976|ref|YP_822132.1| phosphotransferase domain-containing protein [Candidatus Solibacter
usitatus Ellin6076]
gi|116223138|gb|ABJ81847.1| PHP C-terminal domain protein [Candidatus Solibacter usitatus
Ellin6076]
Length = 581
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 138/334 (41%), Gaps = 53/334 (15%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKI-----ESADQVKGLPGIG 263
NK I + + ++ GED R SY +E P +I ++A +V +PGIG
Sbjct: 8 NKEIARVLWETADLMEIAGEDGFRIRSYRNGATAVEGYPERIVDILRDAARKVTDIPGIG 67
Query: 264 KSMQDHIQEIVTTGKLSK----LEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RT 318
K + + EI G + L F T F ++ G+GP + ++E T
Sbjct: 68 KGLAQVLIEITERGSCERRDLLLAKFPP-----TALEFLKIQGLGPKSIALIFEHFRTST 122
Query: 319 LDDLK---NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAG--EEVLPEVI--- 370
+D+L+ E L R+G K + + I ++ LL A + L EV+
Sbjct: 123 IDELERLCQEQKLRDLPRMGAKLEEKVLRSIAQYRQRTGRYLLSYAEGMAQELAEVLGKT 182
Query: 371 -----ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEM----------KF 415
+ GS RRG+ + GDLD+++ P + Y +++E+ K
Sbjct: 183 PGVDRVTTAGSLRRGRETVGDLDLLVTGPAPTAALDVFVAY-PRVEEVLGHGENKASAKV 241
Query: 416 LREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS 475
RE L + P + + + +TG+ N +R+ A G +L++ GLF
Sbjct: 242 GREGLQVDVRT---LPPESFGAAMQYFTGSKDHNVAIRMRAVKMGLKLNEYGLFR----- 293
Query: 476 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
V + +TE+ ++ LG PW+ P R
Sbjct: 294 -----VEDEARVAGETEEGIYRALGLPWIPPELR 322
>gi|385799732|ref|YP_005836136.1| PHP domain-containing protein [Halanaerobium praevalens DSM 2228]
gi|309389096|gb|ADO76976.1| PHP domain protein [Halanaerobium praevalens DSM 2228]
Length = 575
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 144/332 (43%), Gaps = 50/332 (15%)
Query: 210 NKNITEIFGKLINIYRALGE-DRRSFSYYKAIPVIEKLPFKIE---SADQVKGLPGIGKS 265
NK I +I + ++ GE D + +Y A IE KI + +++K + GIG
Sbjct: 6 NKEIAKILSEFADLMAIKGENDFKIKAYTNAARQIESYQTKISELVATNELKEIKGIGSG 65
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-----------EK 314
+ + I E++ G +S++E + + I + + G+GP TA + Y EK
Sbjct: 66 IAETITELLENGSISEMEAIKAELPPGVIEMTN-IQGLGPKTAHRFYYELEIEDLERLEK 124
Query: 315 GHRT--LDDLK-----NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
+T + LK +E L + + KY D I Q+ + ++ + L
Sbjct: 125 ALQTGKIQKLKGFGKKSEAKLLKALKNHEKYVDKINLNKALKTANQIIKKIKHQVDSSLF 184
Query: 368 EVIILCGGSYRRGKASCGDLDVVIM--HPDRKSHK----GFLSKYVKKLKEMKFLREDLI 421
I +CG S RR K GDLD++I P+ + K F ++ + K +R +
Sbjct: 185 SQIEVCGSS-RRAKEMTGDLDILIATSQPEAIAAKLKNLDFTAEVIGAGKTKVSIRTEAG 243
Query: 422 FSTH----SEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGG 477
T S+ +P ++ F TG+ N R+R LA++ +L + GLF G
Sbjct: 244 VQTDFRLVSQAEFPSALHYF-----TGSKAHNVRMRQLAKNNNLKLSEYGLFKK---DGS 295
Query: 478 KQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
K+ + ++E ++F LG ++ P R
Sbjct: 296 KKLI--------ESEADIFSILGLDYIIPELR 319
>gi|417301507|ref|ZP_12088659.1| phosphotransferase domain-containing protein [Rhodopirellula
baltica WH47]
gi|327542194|gb|EGF28686.1| phosphotransferase domain-containing protein [Rhodopirellula
baltica WH47]
Length = 589
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/347 (22%), Positives = 143/347 (41%), Gaps = 74/347 (21%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKL--PFKIESAD---QVKGLP 260
P N + +F +L + GE+ R +Y I L P ++D + LP
Sbjct: 12 PMDNSAVAAVFEELAELLEFRGENPFRIRAYQNGARAIRDLDEPIANLASDPERDLSKLP 71
Query: 261 GIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTL 319
GIGK++ + + ++ TG L +LE ++ + + G+G A KL E+ G +L
Sbjct: 72 GIGKTIAEKTKVLLETGSLPQLEEL-REAVPEVVIQMSRIPGLGAKKASKLREELGIESL 130
Query: 320 DDL-----------------KNEDSL--------THSQRLGLKYFDDIKTRIPRH----- 349
+DL K E ++ S+R+ DD+ I +H
Sbjct: 131 EDLAAACREGRVASLKGFAKKTEAAILDGMAIAKAASERIYWSKADDLTREIGKHMQVCD 190
Query: 350 EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKK 409
+EQME GSYRRG+ + GDLD++ + DR++ L+ +
Sbjct: 191 AIEQME-----------------WAGSYRRGRDTVGDLDLLAVATDREAAMDHLANFPGL 233
Query: 410 LKEMKFLREDLIFSTHSEEVYPRDI-------YAFGLIAWTGNDVLNRRLRLLAESKGYR 462
+ + R D S + + D+ + L +TG+ N +R +A+ G +
Sbjct: 234 VSIIG--RGDTKMSIRVGKAFQVDMRLVDAEEFGAALQYFTGSQAHNIHVRRIAKDHGLK 291
Query: 463 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+++ G+F + + + TE++V+ +G PW+ P R
Sbjct: 292 INEYGVFK----------LDDESRVAGATEEDVYQSIGLPWIAPELR 328
>gi|154300650|ref|XP_001550740.1| hypothetical protein BC1G_10913 [Botryotinia fuckeliana B05.10]
Length = 461
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 75/136 (55%), Gaps = 3/136 (2%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
+Y +I I P+ + S +++ LPG + + + + + + TG ++ FE++ +++ +
Sbjct: 171 AYSTSIASIAAYPYPLHSPNELIRLPGCDQKIANLLHQFLNTGTTDEVFDFEQNPRMQVL 230
Query: 295 SLFGEVWGIGPATAQKLY-EKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRHEV 351
F +WG+ TA++ + ++ + LDD+ E + L Q++G+KY++++ T IPR E
Sbjct: 231 KTFYNIWGVADITAREFHDQREWKDLDDIVVEGWNDLKPVQKIGVKYYEELNTPIPRCET 290
Query: 352 EQMERLLQKAGEEVLP 367
E + ++ + P
Sbjct: 291 EAIGSIILSEARRIDP 306
>gi|440713720|ref|ZP_20894317.1| phosphotransferase domain-containing protein [Rhodopirellula
baltica SWK14]
gi|436441436|gb|ELP34663.1| phosphotransferase domain-containing protein [Rhodopirellula
baltica SWK14]
Length = 577
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 78/344 (22%), Positives = 142/344 (41%), Gaps = 74/344 (21%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKL--PFKIESAD---QVKGLPGIG 263
N + +F +L + GE+ R +Y I L P ++D + LPGIG
Sbjct: 3 NSAVAAVFEELAELLEFRGENPFRIRAYQNGARAIRDLDEPIANLASDPERDLSKLPGIG 62
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDL 322
K++ + + ++ TG L +LE ++ + + G+G A KL E+ G +L+DL
Sbjct: 63 KTIAEKTKVLLETGSLPQLEEL-REAVPEVVIQMSRIPGLGAKKASKLREELGIESLEDL 121
Query: 323 -----------------KNEDSL--------THSQRLGLKYFDDIKTRIPRH-----EVE 352
K E ++ S+R+ DD+ I +H +E
Sbjct: 122 AAACREGRVASLKGFAKKTEAAILDGMAIAKAASERIYWSKADDLTREIGKHMQACDAIE 181
Query: 353 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKE 412
QME GSYRRG+ + GDLD++ + DR++ L+ + +
Sbjct: 182 QME-----------------WAGSYRRGRDTVGDLDLLAVASDREAAMDHLANFPGLVSI 224
Query: 413 MKFLREDLIFSTHSEEVYPRDI-------YAFGLIAWTGNDVLNRRLRLLAESKGYRLDD 465
+ R D S + + D+ + L +TG+ N +R +A+ G ++++
Sbjct: 225 IG--RGDTKMSIRVGKAFQVDMRLVDAEEFGAALQYFTGSQAHNIHVRRIAKDHGLKINE 282
Query: 466 TGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
G+F + + + TE++V+ +G PW+ P R
Sbjct: 283 YGVFK----------LDDESRVAGATEEDVYQSIGLPWIAPELR 316
>gi|366162711|ref|ZP_09462466.1| PHP domain-containing protein [Acetivibrio cellulolyticus CD2]
Length = 569
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 136/305 (44%), Gaps = 45/305 (14%)
Query: 232 RSFSYYKAIPVIEKLPFKIESA---DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKD 288
+S +YY A IE L +E+ D++K + GIG ++ I E+VTTGKL E+ +K
Sbjct: 26 KSKAYYDASRTIELLDEDLEALILNDRLKEIKGIGNALTQKITELVTTGKLEYYENLKKS 85
Query: 289 EKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIP 347
+ + ++ G GP +Y++ G T+ +LK + ++ + L F + +
Sbjct: 86 IPHGLVEML-KIPGFGPKKVAAVYKQLGITTIGELKY--ACEENRLIKLAGFGE---KTQ 139
Query: 348 RHEVEQMERLLQKAGEEVLP-----------------EVIILC-GGSYRRGKASCGDLDV 389
+ +E +E L + + + P +VI +C GGS RR K + D+D+
Sbjct: 140 KKILEGIENLNKYSNQFYYPFAKTLADMIIATLKESGQVIRVCEGGSLRRKKETVKDIDI 199
Query: 390 VIMHPDRKSHKGFLSKY--VKKLKEMKFLREDLIFSTHSE---EVYPRDIYAFGLIAWTG 444
+ + ++ + + V + + +I V D Y + L +TG
Sbjct: 200 LASSNNAEAVMALFTNHPLVSSVTSKGETKSAVILKDGINVDLRVVSDDEYPYALHHFTG 259
Query: 445 NDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWL 504
+ N LR +A+ +G ++++ GLF + ++K EK++F G ++
Sbjct: 260 SKEHNTALRHIAKQQGIKINEYGLF------------KGNETIKCSDEKDIFKVFGMDYI 307
Query: 505 EPHER 509
EP R
Sbjct: 308 EPELR 312
>gi|452210459|ref|YP_007490573.1| DNA polymerase X family [Methanosarcina mazei Tuc01]
gi|452100361|gb|AGF97301.1| DNA polymerase X family [Methanosarcina mazei Tuc01]
Length = 584
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 143/337 (42%), Gaps = 51/337 (15%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKG------LPGIG 263
N+ + E+ + +I + + +Y +A IE IE + KG + G+G
Sbjct: 3 NREVAELLYETADIMEFQQIEWKPRAYRRAAQNIENFGEDIEKVYEKKGKKGLTEISGVG 62
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLDDL 322
+S+ DHI E + TGK+ K E + T L E+ G+G +KL +K +T+ DL
Sbjct: 63 ESIADHIAEYLKTGKVEKFEGLKGKAPSGTAELM-EIRGLGAKKMKKLADKLEIKTMLDL 121
Query: 323 KNEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVLPEVI------ 370
KN +RL G+K ++I I +E L KA EE++ +
Sbjct: 122 KNAVKSHRIRRLSGFGVKSEENIARAIENYEKSHSRIPLGKALPLAEEIISGLKEELKNG 181
Query: 371 --------ILCGGSYRRGKASCGDLDVVIMHPDRKSHK---GFLS-----KYVKK--LKE 412
I+ GS RR K + GD+D++ + + K F+S + V K +
Sbjct: 182 TPGLDLSRIIYTGSLRRLKETIGDIDILAEAEEADAGKIMDAFVSLPEAGQVVSKGRTRS 241
Query: 413 MKFLREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPAT 472
L+E V P + Y L +TG+ N LR +A +GY+L + GL+
Sbjct: 242 SVILKEGFAIDLR---VVPPESYGAALQYFTGSKEHNIGLRNIALREGYKLSEYGLYSKN 298
Query: 473 YGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
G + +E+E++ LG ++ P R
Sbjct: 299 SGE----------RIAGKSEEEIYRKLGLEYIAPELR 325
>gi|449138171|ref|ZP_21773466.1| phosphotransferase domain-containing protein [Rhodopirellula
europaea 6C]
gi|448883195|gb|EMB13733.1| phosphotransferase domain-containing protein [Rhodopirellula
europaea 6C]
Length = 589
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 79/347 (22%), Positives = 143/347 (41%), Gaps = 74/347 (21%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKL--PFKIESAD---QVKGLP 260
P N + +F +L + GE+ R +Y I L P +AD + LP
Sbjct: 12 PMDNSAVAAVFEELAELLEFRGENPFRIRAYQNGARAIRDLDEPIANLAADPERDLSKLP 71
Query: 261 GIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTL 319
GIGK++ + + ++ TG L +LE ++ + + G+G A KL E+ G +L
Sbjct: 72 GIGKTIAEKTKVLLETGSLPQLEEL-REAVPEVVIQMSRIPGLGAKKASKLREELGIESL 130
Query: 320 DDL-----------------KNEDSL--------THSQRLGLKYFDDIKTRIPRH----- 349
+DL K E ++ S+R+ D++ I H
Sbjct: 131 EDLAAACREGRVASLKGFAKKTEAAILDGMAIAKAASERIYWSKADELTREIGGHMQACD 190
Query: 350 EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKK 409
+EQME GSYRRG+ + GDLD++ + DR++ L+ +
Sbjct: 191 AIEQME-----------------WAGSYRRGRDTVGDLDLLAVASDREAAMDHLANFPGL 233
Query: 410 LKEMKFLREDLIFSTHSEEVYPRDI-------YAFGLIAWTGNDVLNRRLRLLAESKGYR 462
+ + R D S + + D+ + L +TG+ N +R +A+ G++
Sbjct: 234 VSIIG--RGDTKMSIRVGKAFQVDMRLVDAEEFGAALQYFTGSQAHNIHVRRIAKDHGFK 291
Query: 463 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+++ G+F + + + TE++V+ +G PW+ P R
Sbjct: 292 INEYGVFK----------LDDESRVAGATEEDVYQSIGLPWIAPELR 328
>gi|85860568|ref|YP_462770.1| DNA polymerase IV [Syntrophus aciditrophicus SB]
gi|85723659|gb|ABC78602.1| DNA polymerase IV [Syntrophus aciditrophicus SB]
Length = 584
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 88/330 (26%), Positives = 151/330 (45%), Gaps = 47/330 (14%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIES----ADQVKGLPGIGK 264
N ++ IF ++ + GE+ +Y +A VIE LP ++ + + +K LPGIG+
Sbjct: 7 NADMAGIFEQMADFLEIRGENPFKIRAYRRAAQVIEHLPREVATMLAEGEDLKALPGIGE 66
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLK 323
++ + E+V TG L E +D +S E+ GIGP TA +L E G ++D+L+
Sbjct: 67 AIASKMAELVRTGHLVAWETL-RDSLPEGLSTLLEIPGIGPKTAYRLATELGISSVDELE 125
Query: 324 N---EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAG--------EEVLPEVIIL 372
E + H RLG + +I H + M R Q+ EE+L + L
Sbjct: 126 QAILEGKVAHLFRLGDRTAQNIL-----HSIRSMRRKDQRIPLGQALPIVEEILSALRPL 180
Query: 373 CG-------GSYRRGKASCGDLDVVIMHPDRKSH-KGFLS-KYVKKLKEMKFLREDLIFS 423
G GS RR + + GD+D++ + ++ + F+S V+++ + +I S
Sbjct: 181 PGVRNLVPAGSLRRFRETLGDIDLMGTADNPEAVIRSFVSLPQVREVLAQGPTKASVILS 240
Query: 424 THSE-EVYPRDIYAFG--LIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
+ ++ + AFG L +TG+ N LR + KG +L + G+
Sbjct: 241 GGLQADLRMVEHEAFGSLLQYFTGSRQHNIALRTRMQKKGLKLSEYGITDT--------- 291
Query: 481 VRARTSL-KFDTEKEVFDFLGFPWLEPHER 509
A L KF TE+ ++ LG ++ P R
Sbjct: 292 --ATDRLEKFSTEEAFYERLGLQYIPPEIR 319
>gi|302677012|ref|XP_003028189.1| hypothetical protein SCHCODRAFT_60166 [Schizophyllum commune H4-8]
gi|300101877|gb|EFI93286.1| hypothetical protein SCHCODRAFT_60166 [Schizophyllum commune H4-8]
Length = 163
Score = 66.6 bits (161), Expect = 3e-08, Method: Composition-based stats.
Identities = 49/164 (29%), Positives = 72/164 (43%), Gaps = 39/164 (23%)
Query: 380 GKASCGDLDVVIMHP--DRKSHKGFLSKYVKKLKEMKFLREDLIFST---HSEEVY---- 430
GK CGD+D++I P D +H G + + +K L+ + EDL E VY
Sbjct: 1 GKKDCGDIDIMITRPTDDGGTHAGAMHELLKYLRRADIITEDLAVPEDPYDPECVYHGLC 60
Query: 431 ------------------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPAT 472
P LI +TG+D+ NR +R A + GY L+ GL+
Sbjct: 61 HLPKTPGAKQRRIDFLAVPWKSKGAALIYYTGDDIFNRAMRYKAGTMGYSLNQKGLY--- 117
Query: 473 YGSGGKQGVRARTS-------LKFDTEKEVFDFLGFPWLEPHER 509
+G + V RT + +TE+E+F LG PW EP +R
Sbjct: 118 --AGVVRDVHDRTKKLNQGNIIASETEEEIFKILGVPWQEPCQR 159
>gi|406956854|gb|EKD84891.1| hypothetical protein ACD_38C00146G0023 [uncultured bacterium]
Length = 583
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 76/301 (25%), Positives = 130/301 (43%), Gaps = 39/301 (12%)
Query: 235 SYYKAIPVIEKLPFKIES---ADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
+Y A IE L +I ++ +PGIG S++DH+ E+ TG++ E +K
Sbjct: 31 AYENAASAIENLTSEIHDLWEEGKLDQIPGIGASLKDHLNELFKTGQVQHWEIIKKGVAP 90
Query: 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEV 351
T F E+ G+GP TA+KL G L+DLK + S L K F +I ++ +
Sbjct: 91 ATFE-FLEIAGVGPKTAEKLAGLGVNNLEDLKKK---LKSGELVKKGFS---AKIAQNIL 143
Query: 352 EQMERLLQKAGEEVLPEVIILCG------------------GSYRRGKASCGDLDVVIMH 393
+++ QK +LP + GS RR A+ GDLD +
Sbjct: 144 GGLDQAGQKGNRMLLPYAAVQADRILNYLKKSPDILQAHPLGSLRRMVATVGDLDFAVSS 203
Query: 394 PDRK---SHKGFLSKYVKKLKEMKFLREDLIFSTHSEEVYPRDIYAFG--LIAWTGNDVL 448
+ K H + + L + ++ ++ S ++ ++G L +TG+
Sbjct: 204 RNPKKVVEHFCKMPGIARILDQGEYKATVVLNSGIQADLLVGKPQSYGALLQHFTGSKPH 263
Query: 449 NRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHE 508
N +LR LA+ KG+ L + G+ K+ + ++ +TE+E + LG P
Sbjct: 264 NIKLRTLAQRKGFSLSEYGV------RSDKRKATSDKLIQTETEEEFYKLLGMQVPPPEI 317
Query: 509 R 509
R
Sbjct: 318 R 318
>gi|307726755|ref|YP_003909968.1| PHP domain-containing protein [Burkholderia sp. CCGE1003]
gi|307587280|gb|ADN60677.1| PHP domain protein [Burkholderia sp. CCGE1003]
Length = 580
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/314 (24%), Positives = 131/314 (41%), Gaps = 58/314 (18%)
Query: 222 NIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSK 281
N R++GE RS I + +K +PGIG + I EI +G
Sbjct: 34 NAARSVGEHGRSVQTM------------IGQGEDLKIIPGIGDDLAGKIAEIAGSGTCEL 81
Query: 282 LEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNEDSLTHSQRLGL---- 336
LE K L ++ G+GP + L+E +TL+DL D R+ L
Sbjct: 82 LERLRKTLPAAITELL-QIPGLGPKRVRALHEALDIQTLEDL---DRAARQGRIRLLPGF 137
Query: 337 ------KYFDDIKTRIPRHE-------VEQMERLLQ--KAGEEVLPEVIILCGGSYRRGK 381
+ ++I+ R+ + + E LL+ +AG+ V + GS+RR +
Sbjct: 138 GEKTEQRIIENIEARLNKSRRFRLDVATQYAEPLLKYLQAGQGVDA---VFAAGSFRRLR 194
Query: 382 ASCGDLDVVIMHPDRKSHKGFLSKY--VKKLKEMKFLREDLIFSTHSEE----VYPRDIY 435
+ GDLDV++ D + + Y VK + R ++ + + V P I
Sbjct: 195 DTVGDLDVLVAARDSAAATRRFTHYEEVKTVLASGDTRSSVVLACGMQVDLRVVAPESIG 254
Query: 436 AFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEV 495
A L+ +TG+ N LR +A+++G ++++ G+F T G +TE V
Sbjct: 255 A-ALVYFTGSKAHNIALRRVAQTQGLKINEYGVFKGTQRIAG------------ETEDSV 301
Query: 496 FDFLGFPWLEPHER 509
+ +G W+ P R
Sbjct: 302 YRTIGLGWVPPELR 315
>gi|307110951|gb|EFN59186.1| hypothetical protein CHLNCDRAFT_138090 [Chlorella variabilis]
Length = 433
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 74/131 (56%), Gaps = 4/131 (3%)
Query: 239 AIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFG 298
A+ V+ +L + +ESA V+ L G+G + I+ TG ++ + + K++ + LF
Sbjct: 300 ALWVLGRLTYPLESACDVEQL-GLGPKTTAKLCSILRTGTCHQVLAAQLNSKLQELRLFM 358
Query: 299 EVWGIGPATAQKLYEKGHRTLDDLKNED---SLTHSQRLGLKYFDDIKTRIPRHEVEQME 355
V G+G TA+ + TL+D++ LT Q++GL++F D++ ++PR EV Q E
Sbjct: 359 SVMGVGEQTAKHWVAQNCYTLEDVRRRQQDLGLTQGQKVGLRHFGDMQHKVPRMEVAQAE 418
Query: 356 RLLQKAGEEVL 366
++Q+ E++
Sbjct: 419 AIVQERCFELI 429
>gi|113913509|gb|ABI48898.1| POL4 [Saccharomyces cariocanus]
Length = 582
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 87/200 (43%), Gaps = 27/200 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVK-GLPGIGKSMQD 268
N+ + +L Y GE R+ SY A +E F I S ++ L IG S+
Sbjct: 188 NELVIAALKRLTKKYEIKGEKFRARSYRLAKQSLENCDFNISSGEEAHIKLRNIGPSIAR 247
Query: 269 HIQEIVTTGKLSKL-EHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
IQ I+ TG L L + ++K++ F +GIGP A++ +L N +S
Sbjct: 248 KIQVILDTGVLPGLNDSMGLEDKLK---YFKNCYGIGPEIAKRW---------NLLNFES 295
Query: 328 LTHSQR-------------LGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCG 374
+ + G Y+DD ++ R+E +Q A E+ PE +
Sbjct: 296 FCVAAKKDPEEFVSDWTILFGWSYYDDWLCKMSRNECFAHLEKVQNALSEIDPECQVELQ 355
Query: 375 GSYRRGKASCGDLDVVIMHP 394
GSY RG + CGD+D++ P
Sbjct: 356 GSYNRGYSKCGDIDLLFFKP 375
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 12/73 (16%)
Query: 438 GLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFD 497
G I +TG+ NR +R+LA KG++L GLF R T L+ E+++F+
Sbjct: 513 GRIHYTGSKEYNRWIRILAAQKGFKLTQHGLF------------RNNTLLESFNERKIFE 560
Query: 498 FLGFPWLEPHERN 510
L ++EP RN
Sbjct: 561 LLNLKYVEPKHRN 573
>gi|20067727|emb|CAD29104.1| chimeric DNA-directed DNA polymerase xf3-9e [synthetic construct]
Length = 205
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 99/197 (50%), Gaps = 35/197 (17%)
Query: 340 DDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSH 399
+D + RIPR E+ QM+ ++ +++ PE I GS+RRG S GD+DV++ HP+ S
Sbjct: 17 EDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPNFTSE 76
Query: 400 KG----FLSKYVKKLKEMKFLREDL------------IFSTHSEEVYP------RDIYA- 436
L + V++L++++F+ + L + S + E YP R I A
Sbjct: 77 SSKQPKLLHRVVEQLQKVRFITDTLSKGETKFMGVCQLPSENDENEYPHRRIDIRLIPAE 136
Query: 437 ---FGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEK 493
+ + +TG R+R + G+ +++ + P G GV A L D+E+
Sbjct: 137 EKPYTIFHFTGPVSYLIRIR---AALGFTINEYTIRPL-----GVTGV-AGEPLPVDSEQ 187
Query: 494 EVFDFLGFPWLEPHERN 510
++FD++ + + EP +R+
Sbjct: 188 DIFDYIQWRYREPKDRS 204
>gi|386839206|ref|YP_006244264.1| DNA polymerase beta [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374099507|gb|AEY88391.1| DNA polymerase beta [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451792498|gb|AGF62547.1| DNA polymerase beta [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 575
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 80/316 (25%), Positives = 134/316 (42%), Gaps = 58/316 (18%)
Query: 228 GEDRRSFSYYKAIPVIEKLPFKIES--ADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF 285
G+ ++ +Y KA I P + + AD ++ +P +G+S+ + + E + TG ++ +E
Sbjct: 24 GDAFKARAYEKAARAIGGYPVDVSTLDADGLREIPNVGRSIAEKVAEYLRTGTMAVVE-- 81
Query: 286 EKDEKVRT-ISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKT 344
E+ K+ + + +GP A +LYE H + + LK F +
Sbjct: 82 ERRAKIPAGVRELITIPTLGPKKALRLYEDLHISSVSELAAAIEADALAD-LKGFGEKTQ 140
Query: 345 RIPRHEVEQMERLLQKAG------------EEVLPEVIILCG-------GSYRRGKASCG 385
RH +E LLQ+AG EE+ E+ + G GS RR + + G
Sbjct: 141 ENIRHGIE----LLQRAGSRVPLALALDTAEEITAELSAVTGCERCAYAGSLRRMRETVG 196
Query: 386 DLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE------------EVYPRD 433
DLDV++ R+S + ++ L E+ E + V P +
Sbjct: 197 DLDVLV--SARRS-----APFMDALCELPVTAEVIARGAKKTSVRTGKGLQLDLRVVPPE 249
Query: 434 IYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEK 493
+ L +TG+ N R R +A G +L + G+F GSG S+ TE+
Sbjct: 250 SWGAALQYFTGSKAHNIRTRTIAVHLGLKLSEYGVFDT--GSG--------ESVASRTEE 299
Query: 494 EVFDFLGFPWLEPHER 509
EV+ LG PW+ P R
Sbjct: 300 EVYARLGLPWIPPTLR 315
>gi|448709366|ref|ZP_21701183.1| PHP domain protein [Halobiforma nitratireducens JCM 10879]
gi|445792296|gb|EMA42906.1| PHP domain protein [Halobiforma nitratireducens JCM 10879]
Length = 583
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 86/334 (25%), Positives = 140/334 (41%), Gaps = 45/334 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIES--AD----QVKGLPGIG 263
N I F + ++ A G + + +Y +A + P I AD ++G+ G+G
Sbjct: 4 NAEIAGRFEEFADLLEADGVEYKPRAYRRAAENVRSHPTPIADYVADGDREAIEGIEGVG 63
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDL 322
++ I E V TG + +LE + I+ + G+GP TA KLY E G TLDDL
Sbjct: 64 DAIASKIVEYVETGGIEELEELRAALPI-DIADITRIEGVGPKTAGKLYRELGIETLDDL 122
Query: 323 KNEDSLTHSQRL---GLKYFDDIKTRIP-RHEVEQMERLLQ--KAGEEVLP-----EVII 371
+ Q + G K +I+ + EV Q L + ++VL E +
Sbjct: 123 EVAAEAGEIQEVTGFGPKTEQNIRDNLEFAREVGQRHLLGEGRPLADDVLAYLEDLETVE 182
Query: 372 LC--GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYV--------------KKLKEMKF 415
C GS RR + + GD+DV+ S + + +V K +
Sbjct: 183 RCEVAGSIRRWRETIGDVDVLAA---TDSPEAVVEAFVDWGSVDSEIESGPAKASVRIGE 239
Query: 416 LREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS 475
+R DL E + L +TG+ N RLR A +G +L++ G F +
Sbjct: 240 IRVDLRVVAPEE-------FGSALQYFTGSKDHNVRLRNYAIDRGMKLNEYGAFDVSDLE 292
Query: 476 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
++G R + DTE+ +++ LG P + P R
Sbjct: 293 DSQEGQRVGDRVAGDTEEGMYEALGLPAIPPELR 326
>gi|292492014|ref|YP_003527453.1| PHP domain-containing protein [Nitrosococcus halophilus Nc4]
gi|291580609|gb|ADE15066.1| PHP domain protein [Nitrosococcus halophilus Nc4]
Length = 573
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 87/331 (26%), Positives = 136/331 (41%), Gaps = 51/331 (15%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIES----ADQVKGLPGIGK 264
N I EIF L ++ G + R +Y + I S + LP IG
Sbjct: 5 NTEIAEIFNTLADLLEIEGANPFRVRAYRNGARTVGGFSQNIASLLKEGKDLTELPHIGS 64
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHR-----TL 319
+ D I+ IV TG+L LE E+ RT ++ I P K HR +L
Sbjct: 65 DLADKIRTIVDTGRLPLLEEVEQ----RTPEALSKLMAI-PGLGAKRIAALHRELKVDSL 119
Query: 320 DDLKNEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIIL---- 372
+DLK + + L G K D IK I R + L +A V P + L
Sbjct: 120 EDLKRVIRMGKVRELEGFGKKTEDLIKAGIERIASSEKRFPLLQAESIVKPLLAYLETIA 179
Query: 373 ------CGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYV-----KKLKEMKFLREDLI 421
GSYRR K + GDLD+++ K + ++V KK+ R ++
Sbjct: 180 GIKDIEVAGSYRRRKETVGDLDILVTC---KRGSPVMERFVTYEEIKKVLSQGETRATVL 236
Query: 422 FSTHSE---EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGK 478
+ + V P+ Y L +TG+ N +R + K ++++ G+F G+
Sbjct: 237 LRSGIQVDLRVVPQVSYGAALHYFTGSQAHNIAVRQIGVKKNLKINEYGVFK------GE 290
Query: 479 QGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
Q V +TE+E+F+ +G P++EP R
Sbjct: 291 QRVAG------ETEQEIFEQVGLPYIEPELR 315
>gi|452944608|ref|YP_007500773.1| PHP domain protein [Hydrogenobaculum sp. HO]
gi|452883026|gb|AGG15730.1| PHP domain protein [Hydrogenobaculum sp. HO]
Length = 576
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 80/332 (24%), Positives = 157/332 (47%), Gaps = 47/332 (14%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESADQVK------GLPGI 262
K+I ++F ++ LGE++ R +Y K ++ ++ I+S D++K + GI
Sbjct: 4 TKDIAKLFKEMALAAEFLGENKFRVLAYQKVADILFEIDKDIKSVDELKEYLSSNQIHGI 63
Query: 263 GKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE----KGHRT 318
G+S + I+E + TG++ K + F + + + + GIGP T + LY+ K
Sbjct: 64 GESSLEKIEEYLKTGRIKKHDEFLQKVPKELLDIM-DAPGIGPKTLKTLYDVFGIKNKEE 122
Query: 319 LDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVL------PEV 369
L ++ + + G K ++IK I E + + +A +++L E+
Sbjct: 123 LLKALDDPRIKTIKGFGPKKIENIKRGIALFEQSKERMFITEAYSLAQDILNYMKGCKEI 182
Query: 370 I-ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFL-----REDLIFS 423
I I GS RR K + GD+D+++ +K + +Y K K+++ + + I
Sbjct: 183 INISVAGSLRRMKETIGDIDILV--SAKKEDFPKIHEYFKAYKDIEQVIGSGETKTSILL 240
Query: 424 THSEEVYPRDI----YAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS--GG 477
+S++V R + + GL +TG+ N R+R +A+ KGY++ + G+F + G GG
Sbjct: 241 KNSKQVDLRVLKEEEWGSGLQYFTGSKEHNVRIRDIAKEKGYKISEYGIFEISSGKRLGG 300
Query: 478 KQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
++ E+++++ LG P R
Sbjct: 301 EK------------EEDIYNILGMVMPPPEIR 320
>gi|20089612|ref|NP_615687.1| DNA-dependent DNA polymerase family X protein [Methanosarcina
acetivorans C2A]
gi|19914532|gb|AAM04167.1| DNA-directed DNA polymerase, family X [Methanosarcina acetivorans
C2A]
Length = 588
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 87/338 (25%), Positives = 145/338 (42%), Gaps = 49/338 (14%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKG------LPGIG 263
N+ I E+ + +I + + +Y +A IE L IE + KG +PGIG
Sbjct: 3 NREIAELLYETADIMEFQQIEWKPRAYRRAAQNIENLGEDIEKVYEKKGKKGLTEIPGIG 62
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDL 322
+++ DHI E + TGK+ K E + T L E+ G+G ++L E +T+ DL
Sbjct: 63 EAIADHIAEYLETGKVKKFEDLKGKAPSGTTELM-EIRGLGAKKTKRLADELKVKTIPDL 121
Query: 323 K---NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVL---------- 366
K N + + G ++I + +E L K EE++
Sbjct: 122 KAAVNAHRIRRLEGFGEISEENIARSLRNYEKSHSRMALGKVLPLAEEIISALKTTLKTE 181
Query: 367 -----PEV---IILCGGSYRRGKASCGDLDVVIMHPDRKSHK---GFLS-KYVKKLKEMK 414
PE+ ++ GS RR K + GD+D++ + K F+S V ++
Sbjct: 182 LGSKTPEIDFSKLIYTGSLRRLKETIGDIDILAEAEGEQVGKVMNAFVSLPAVGQVVSKG 241
Query: 415 FLREDLIFSTHSE---EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPA 471
R +I E V P + Y L +TG+ N LR +A+ +GY+L + GL+
Sbjct: 242 NTRSSVILKEGLEVDLRVVPPESYGAALQYFTGSKEHNIELRNIAQREGYKLSEYGLYEK 301
Query: 472 TYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ GKQ + +E+EV+ LG ++ P R
Sbjct: 302 ---ASGKQ-------VAGKSEEEVYRKLGLEYIVPELR 329
>gi|392375791|ref|YP_003207624.1| phP C-terminal domain-containing protein, partial [Candidatus
Methylomirabilis oxyfera]
gi|258593484|emb|CBE69823.1| PHP C-terminal domain protein [Candidatus Methylomirabilis oxyfera]
Length = 577
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 83/328 (25%), Positives = 145/328 (44%), Gaps = 44/328 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSF---SYYKAIPVIEKLPFKIESADQVKGLP---GIG 263
N +I ++F ++ ++ +D F +Y +A +E L +IE+ GL GIG
Sbjct: 3 NLDIAKLFHEIADLLEI--QDENIFKIRAYRRAAMNLESLTEEIEAVAARGGLAEIAGIG 60
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 323
K + IQ+ + TG++ LE + L + G+GP T + L+++ +D ++
Sbjct: 61 KDLAAKIQQAIETGRIEYLEELRTAIPRGVVELMA-IPGVGPKTTKLLFQQLQ--VDSVE 117
Query: 324 NEDSLT-HSQRLGL-----KYFDDI--KTRIPRHEVEQME--RLLQKAGE-----EVLPE 368
++L + LGL K D+I ++ + E+M R L A E E LPE
Sbjct: 118 RLETLALQGKLLGLPGIKQKTVDNILKGIQVVKTGRERMPLGRALPLALELVRILETLPE 177
Query: 369 VI-ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 427
V I GS RR + + DLD++ + + + ++ E+ E H +
Sbjct: 178 VTQISLAGSLRRMRETVKDLDLLATSTKPATVMAVFTS-LPQVAEVLLQGETKATIRHRD 236
Query: 428 ------EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGV 481
V D + L +TG+ N R+R LA KG ++ + G+F G
Sbjct: 237 GIQVDLRVVEPDCFGAALQYFTGSKAHNIRVRELAVRKGLKVSEYGVFKEATG------- 289
Query: 482 RARTSLKFDTEKEVFDFLGFPWLEPHER 509
T + TE+EV++ +G P++ P R
Sbjct: 290 ---TRIAGATEEEVYETIGLPYIPPELR 314
>gi|195953813|ref|YP_002122103.1| PHP domain-containing protein [Hydrogenobaculum sp. Y04AAS1]
gi|195933425|gb|ACG58125.1| PHP domain protein [Hydrogenobaculum sp. Y04AAS1]
Length = 576
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 76/296 (25%), Positives = 146/296 (49%), Gaps = 35/296 (11%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESADQVK------GLPGI 262
K+I ++F ++ LGE++ R +Y K ++ ++ I+S D++K + GI
Sbjct: 4 TKDIAKLFKEMALAAEFLGENKFRVLAYQKVADILFEIDKDIKSVDELKEYLTTNQIHGI 63
Query: 263 GKSMQDHIQEIVTTGKLSKLEHFEKDEKV-RTISLFGEVWGIGPATAQKLYE----KGHR 317
G+S + I+E + TG++ K H+E +KV + + + GIGP T + LY+ K
Sbjct: 64 GESSLEKIEEYLKTGRIKK--HYEFLQKVPKELLDIMDAPGIGPKTLKTLYDVFGIKNKE 121
Query: 318 TLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVLP------E 368
L ++ + + G K ++IK I E + + +A +++L E
Sbjct: 122 ELLKALDDPRIKTIKGFGPKKIENIKRGIALFEQSKERMFITEAYSLAQDILSYMKGCKE 181
Query: 369 VI-ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFL-----REDLIF 422
+I I GS RR K + GD+D+++ +K + +Y K K+M+ + + I
Sbjct: 182 IINISVAGSLRRMKETIGDIDILV--STKKEDFPKVHEYFKAYKDMEQVIGSGETKTSIL 239
Query: 423 STHSEEVYPRDI----YAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYG 474
+S++V R + + GL +TG+ N ++R +A+ KGY++ + G+F + G
Sbjct: 240 LKNSKQVDLRVLKEEEWGSGLQYFTGSKEHNIKIRDIAKEKGYKISEYGIFEISSG 295
>gi|292654904|ref|YP_003534801.1| DNA polymerase X [Haloferax volcanii DS2]
gi|448292878|ref|ZP_21483199.1| DNA polymerase X [Haloferax volcanii DS2]
gi|291371449|gb|ADE03676.1| DNA polymerase X [Haloferax volcanii DS2]
gi|445571853|gb|ELY26396.1| DNA polymerase X [Haloferax volcanii DS2]
Length = 582
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 135/334 (40%), Gaps = 46/334 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE-----SADQVKGLPGIGK 264
N I + + ++ A + SY +A + + P +E D V+ + +G
Sbjct: 4 NDEIATLLEEFADLLEAKDVAYKPSSYRRAAENVREHPTPVEELAEAGEDAVQEIDRVGD 63
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 323
++ I E V TG++ +LE +D V L V G+GP T KLYE G LDDL+
Sbjct: 64 AIAAKIVEYVETGRIEELEDLREDLPVDMAGLTS-VEGVGPKTVGKLYEALGVSDLDDLE 122
Query: 324 ---NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCG------ 374
+ + + G K +I I LL +A V +++ G
Sbjct: 123 AAARDGEIQEVKGFGAKTETNILDGIEFAREATGRELLGRA-RPVADDLLTYLGDYDAVG 181
Query: 375 -----GSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYV--------------KKLKEMKF 415
GS RR + + GD+DV+ D ++ + +++ K +
Sbjct: 182 RVEPAGSMRRWRETVGDIDVLAESADAEA---VIDRFLAWDLVGDTIEAGEQKASVRVNG 238
Query: 416 LREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS 475
+R DL SE Y L +TG+ N LR +A +G ++++ G+F +
Sbjct: 239 MRVDLRVVEPSE-------YGAALQYFTGSKDHNVHLRNIAIDRGLKMNEYGMFDTSDVD 291
Query: 476 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
G RA T + DTE ++ L P + P R
Sbjct: 292 DPDDGPRAGTRVAGDTEASMYAALDLPLVPPELR 325
>gi|448572783|ref|ZP_21640544.1| DNA polymerase X [Haloferax lucentense DSM 14919]
gi|445719555|gb|ELZ71234.1| DNA polymerase X [Haloferax lucentense DSM 14919]
Length = 582
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 135/334 (40%), Gaps = 46/334 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE-----SADQVKGLPGIGK 264
N I + + ++ A + SY +A + + P +E D V+ + +G
Sbjct: 4 NDEIASLLEEFADLLEAKDVAYKPSSYRRAAENVREHPTPVEELAEAGEDAVQKIDRVGD 63
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 323
++ I E V TG++ +LE +D V L V G+GP T KLYE G LDDL+
Sbjct: 64 AIAAKIVEYVETGRIEELEDLREDLPVDMAGLTS-VEGVGPKTVGKLYEALGVSDLDDLE 122
Query: 324 ---NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCG------ 374
+ + + G K +I I LL +A V +++ G
Sbjct: 123 AAARDGEIQEVKGFGAKTEANILDGIEFAREATGRELLGRA-RPVADDLLAYLGDYDAVG 181
Query: 375 -----GSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYV--------------KKLKEMKF 415
GS RR + + GD+DV+ D ++ + +++ K +
Sbjct: 182 RVEPAGSMRRWRETVGDIDVLAESADAEA---VIDRFLAWDLVGDTIEAGEQKASVRVNG 238
Query: 416 LREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS 475
+R DL SE Y L +TG+ N LR +A +G ++++ G+F +
Sbjct: 239 MRVDLRVVEPSE-------YGAALQYFTGSKDHNVHLRNIAIDRGLKMNEYGMFDISDVD 291
Query: 476 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
G RA T + DTE ++ L P + P R
Sbjct: 292 DPDDGPRAGTRVAGDTEASMYAALDLPLVPPELR 325
>gi|20067743|emb|CAD29112.1| chimeric DNA-directed DNA polymerase xf4-3n [synthetic construct]
Length = 188
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 38/172 (22%)
Query: 364 EVLPEVIILCG---GSYRRGKASCGDLDVVIMHPDRKSHKG----FLSKYVKKLKEMKFL 416
++L + I+ G GS+RRG S GD+DV++ HP+ S L + V++L++++ +
Sbjct: 28 KILSKNIVAVGSLRGSFRRGAESSGDMDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRRI 87
Query: 417 ------------REDLIFSTHSEEVY-------PRDIYAFGLIAWTGNDVLNRRLRLLAE 457
R+ ++F ++ Y P+D Y G++ +TG+D+ N+ +R A
Sbjct: 88 KGLSFSVKVCGERKCVLFIEWEKKTYQLDLFTAPKDQYYCGVLYFTGSDIFNKNMR--AH 145
Query: 458 SKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ Y+L+ GLF + LK TEKE+ LGF + P +R
Sbjct: 146 ALNYKLNQYGLFKN----------QTLVPLKITTEKELIKELGFTYRIPKKR 187
>gi|375096600|ref|ZP_09742865.1| DNA polymerase IV (family X) [Saccharomonospora marina XMU15]
gi|374657333|gb|EHR52166.1| DNA polymerase IV (family X) [Saccharomonospora marina XMU15]
Length = 578
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 72/298 (24%), Positives = 135/298 (45%), Gaps = 42/298 (14%)
Query: 235 SYYKAIPVIEKLPFKIES--ADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVR 292
+Y KA +E P ++ + + ++ +P +G + I+E + TG + +L+
Sbjct: 31 AYEKAAQAVEGHPAELATLRSAELDEIPNVGSQLARKIREFLDTGSVGELDELRARVPTG 90
Query: 293 TISLFGEVWGIGPATAQKLYEK-GHRTLDDL-----------------KNEDSLTHSQRL 334
SL + G+GP A+++YE+ G + DDL ++ED+L + R
Sbjct: 91 LRSLL-TIPGLGPRRARQVYEELGITSPDDLLAALHEHRLRELRGWGARSEDNLAAAVRE 149
Query: 335 GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI-ILCGGSYRRGKASCGDLDVVIMH 393
+ ++ + + ERLLQ+ LP+V + GS RR + S GD+D+++
Sbjct: 150 AQSAGERVRLGL---ALGVAERLLQRL--RPLPQVQRVEYAGSLRRMRDSIGDIDILVAS 204
Query: 394 PDRKSHKGFLSK--YVKKLKEMKFLREDLIFSTHSE---EVYPRDIYAFGLIAWTGNDVL 448
D + +++ V+++ R ++ +T + V + L+ +TG+
Sbjct: 205 DDPEPIMRAVTELPVVERVISHGSTRTSVLTATGLQVDVRVVAPPSWGAALLYFTGSKAH 264
Query: 449 NRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEP 506
N +LR LA G +L + GLF V + + E+EV+ LG PW+EP
Sbjct: 265 NIQLRELALRAGLKLSEYGLFE----------VETDRRVAGEREEEVYARLGLPWIEP 312
>gi|448362121|ref|ZP_21550733.1| PHP domain-containing protein [Natrialba asiatica DSM 12278]
gi|445648991|gb|ELZ01935.1| PHP domain-containing protein [Natrialba asiatica DSM 12278]
Length = 594
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 130/297 (43%), Gaps = 54/297 (18%)
Query: 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY- 312
D ++ + G+G ++ I E V TG + +LE + + + I+ + G+GP TA KLY
Sbjct: 54 DAIEDIDGVGDAIATKIVEYVETGSIDELEELQTELPI-DIADITRIEGVGPKTAGKLYH 112
Query: 313 EKGHRTLDDLKNEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVL 366
E G TLDDL+ Q + G K +I+ I +LL +A ++VL
Sbjct: 113 ELGIETLDDLEAAAEANEIQAVSGFGPKTEQNIRDNIEFAREVGTRQLLGEARPLADDVL 172
Query: 367 P-----EVIILC--GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYV------------ 407
E + C GS RR + + GD+DV++ D ++ + ++V
Sbjct: 173 AFLEGIEEVERCEVAGSIRRWRETIGDVDVLVGTNDNEA---VIEQFVEWGSVDSEIESG 229
Query: 408 --KKLKEMKFLREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDD 465
K + +R DL V D + L +TGN N LR A +G ++++
Sbjct: 230 PAKASVRVGEIRVDL-------RVVVPDEFGAALQYFTGNKDHNVSLRNYAIDRGLKVNE 282
Query: 466 TGLF-----------PATYGS--GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
G+F A GS GG Q + R L +TE+ +++ LG W+ P R
Sbjct: 283 YGVFDVSEVDAGPDGSAESGSATGGSQRIGDR--LAGETEEGMYEALGLSWMPPELR 337
>gi|383621730|ref|ZP_09948136.1| PHP domain-containing protein [Halobiforma lacisalsi AJ5]
gi|448702579|ref|ZP_21700012.1| PHP domain-containing protein [Halobiforma lacisalsi AJ5]
gi|445777140|gb|EMA28110.1| PHP domain-containing protein [Halobiforma lacisalsi AJ5]
Length = 583
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 81/336 (24%), Positives = 141/336 (41%), Gaps = 49/336 (14%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIES------ADQVKGLPGIG 263
N I F + ++ A + + +Y +A + P I D ++ + G+G
Sbjct: 4 NAEIAGRFEEFADLLEADDVEYKPRAYRRAAENVRSHPTPIADYVAEGDRDAIEDIDGVG 63
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDL 322
++ I E V TG + +LE + + I+ V G+GP TA KLY E G TLDDL
Sbjct: 64 DAIASKIVEYVETGSIDELEELRAELPI-DIADITRVEGVGPKTAGKLYRELGIETLDDL 122
Query: 323 KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQK--------AGEEVLP-----EV 369
E++ + + +K F + R +E ++ Q+ ++VL E
Sbjct: 123 --EEAAENGEIQEVKGFGPKTEQNIRDNLEFARQVGQRYLLGEGRPLADDVLAFLESLEE 180
Query: 370 IILC--GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYV--------------KKLKEM 413
+ C GS RR + + GD+DV+ S + + ++V K +
Sbjct: 181 VDRCEVAGSIRRWRETIGDVDVLAA---TDSPEAVVERFVDWDSVDGEIESGPAKASVRV 237
Query: 414 KFLREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATY 473
+R DL E + L +TG+ N LR A +G +L++ G F +
Sbjct: 238 GEIRIDLRVVAPEE-------FGSALQYFTGSKDHNVTLRNYAIDRGMKLNEYGAFDVSD 290
Query: 474 GSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
++G R + +TE+ +++ LG PW+ P R
Sbjct: 291 LEDAEEGQRVGDRVAGETEEGMYEALGLPWIPPELR 326
>gi|342319290|gb|EGU11239.1| Sorting nexin-41 [Rhodotorula glutinis ATCC 204091]
Length = 808
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 77/322 (23%), Positives = 125/322 (38%), Gaps = 114/322 (35%)
Query: 231 RRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEK 290
+ S SY A+ I PFKIE+ +Q +P IG+ + IQE + G F K+ +
Sbjct: 58 KESISYATAVSCIIGTPFKIETVEQAAKIPKIGEKLTLKIQEFLDYG-------FIKESR 110
Query: 291 VRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHE 350
A A +LYE+G RTL+DL+ + + LKY+DD++ +
Sbjct: 111 Y--------------AKANELYERGVRTLEDLRRAMNRPRIKSY-LKYYDDMQEK----- 150
Query: 351 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSH-KGFLSKYVKK 409
YRRGK D+D++ +P R +G L V++
Sbjct: 151 --------------------------YRRGKEFSNDVDILFTYPHRDGEERGVLQALVER 184
Query: 410 LKEMKFLRED------------------------------LIF------STHSEEVYPR- 432
+++ + ED +IF +T + Y R
Sbjct: 185 MQQKNLIPEDGILTLTTCGTDRTITPNRSATLLDALDKALIIFRHPANGTTRVRDKYRRV 244
Query: 433 DI-------YAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRART 485
D+ + ++ WTG+ R LR A+ + D SG G+R RT
Sbjct: 245 DLVVTTWREWGSAVVGWTGSTQFERDLRRHAKRINLKFD----------SG---GIRNRT 291
Query: 486 S---LKFDTEKEVFDFLGFPWL 504
+ ++ TEK+VF LG ++
Sbjct: 292 TDEPVEAVTEKDVFRVLGLDYI 313
>gi|13879400|gb|AAH06681.1| Polb protein [Mus musculus]
Length = 111
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIG 304
+ I E + TGKL KLE +D+ +I+ V GIG
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIG 107
>gi|169831315|ref|YP_001717297.1| phosphotransferase domain-containing protein [Candidatus
Desulforudis audaxviator MP104C]
gi|169638159|gb|ACA59665.1| PHP C-terminal domain protein [Candidatus Desulforudis audaxviator
MP104C]
Length = 578
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 83/327 (25%), Positives = 135/327 (41%), Gaps = 43/327 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPF---KIESADQVKGLPGIGKS 265
NK++ I + +I GE+ R +Y +A IE L ++ AD++ +PG+G+
Sbjct: 3 NKHVARILQNIGDILEIRGENPFRVRAYRRAAHSIEALGVDLAELRRADRLTDIPGVGRD 62
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK----GHRTLDD 321
+ I EI+ TG + + ++ + L V GIGP TA+ LYE+ G L+
Sbjct: 63 LAGKITEILDTGTCAYYDRLIREIPAGIVQLL-TVPGIGPRTARILYEELQISGLDELER 121
Query: 322 LKNEDSLTHSQRLGLKYFDDI----------KTRIPRHEVEQMERLLQ---KAGEEVLPE 368
L L + LG K + I + R+P V L +AG P
Sbjct: 122 LGRAGRLAELRGLGEKTQNKILSGLELVRRGRERLPLGRVYPFASALVETIRAGGA--PV 179
Query: 369 VIILCGGSYRRGKASCGDLDVVIMHPDRKS------HKGFLSKYVKKLKEMKFLREDLIF 422
I GS RR + + D+D+V ++ GF ++ +++ R +
Sbjct: 180 ERISVAGSIRRFQDTVKDVDIVAASGKPEAVIRFFTRLGFWTEILEEGSTRAAARTEEGL 239
Query: 423 STHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVR 482
V P +Y L TG+ N R+R LA KG +L++ G+F R
Sbjct: 240 RVDLRVVDP-AVYGAALCYLTGSKAHNIRMRQLAAQKGLKLNEYGVF------------R 286
Query: 483 ARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ E +VF L P++ P R
Sbjct: 287 DDRCIAGAEEDDVFAALELPFIPPELR 313
>gi|448582195|ref|ZP_21645699.1| DNA polymerase X [Haloferax gibbonsii ATCC 33959]
gi|445731843|gb|ELZ83426.1| DNA polymerase X [Haloferax gibbonsii ATCC 33959]
Length = 583
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 133/334 (39%), Gaps = 46/334 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP-----FKIESADQVKGLPGIGK 264
N I + + ++ A + SY +A + + P E D V+ + +G
Sbjct: 4 NDEIASLLEEFADLLEAKDVAYKPSSYRRAAENVREHPKPVEELAAEGEDAVQEIDRVGD 63
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 323
++ I E V TG + +LE D V L V G+GP T KLYE G LDDL+
Sbjct: 64 AIASKIVEYVETGSIEELEELRADLPVDMAGLTS-VEGVGPKTVGKLYEALGVADLDDLE 122
Query: 324 ---NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCG------ 374
+ + + G K +I I LL KA V +++ G
Sbjct: 123 AAARDGEIQEVKGFGAKTEANILDGIEFAREATGRELLGKA-RPVADDLLSYLGDHDAVG 181
Query: 375 -----GSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYV--------------KKLKEMKF 415
GS RR + + GD+DV+ D ++ + +++ K +
Sbjct: 182 RVEPAGSMRRWRETVGDIDVLAESADAEA---VIDRFLAWDLVGDTIEAGEQKASVRVNG 238
Query: 416 LREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS 475
+R DL +E Y L +TG+ N LR +A +G ++++ G+F +
Sbjct: 239 MRVDLRVVAPAE-------YGAALQYFTGSKDHNVHLRNIAIDRGLKMNEYGMFDVSDVD 291
Query: 476 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
G RA T + DTE+ ++ L P + P R
Sbjct: 292 DPDDGPRAGTRVAGDTEESMYAALDLPLVPPELR 325
>gi|294055403|ref|YP_003549061.1| PHP domain-containing protein [Coraliomargarita akajimensis DSM
45221]
gi|293614736|gb|ADE54891.1| PHP domain protein [Coraliomargarita akajimensis DSM 45221]
Length = 577
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 129/280 (46%), Gaps = 30/280 (10%)
Query: 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 311
++ ++ + GIG ++ D I + TG+L+ + I + E+ G+G +KL
Sbjct: 49 ASGELASVKGIGSALVDKIATLHETGELAYYTDLRESIAPGLIEML-EIPGVGGKKVKKL 107
Query: 312 YEK-GHRTLDDLKNEDSLTHSQRLGLKYF---------DDIKTRIP---RH---EVEQME 355
++ G T++ LK+ + Q LK F I+ R RH E ++
Sbjct: 108 HDALGVETIEALKH--ACEAGQVAALKGFGAKSEAKILTGIENRAAYAKRHLWWEAAEVA 165
Query: 356 RLLQKAGEEVLPEV-IILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY--VKKLKE 412
L+ K G LPEV + GS RR + + GDLD ++ ++ + +K VK++
Sbjct: 166 GLIVK-GLRQLPEVERVEAAGSLRRLRETVGDLDFIVASSAPEAVMEWFTKQGGVKEVTA 224
Query: 413 MKFLREDLIFSTHSE---EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLF 469
+ + F + V P + +AF L +TG+ N +R A S+GY L + GL
Sbjct: 225 NGLTKSSVRFENGLQADLRVVPAEQFAFALHHFTGSKEHNVAMRQRALSRGYSLSEWGL- 283
Query: 470 PATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
T GG + A TS+ TE E+F+FLG P + P R
Sbjct: 284 SETSDKGGAESA-ADTSIT--TEAELFEFLGLPEIPPELR 320
>gi|20067725|emb|CAD29103.1| chimeric DNA-directed DNA polymerase xf3-9d [synthetic construct]
Length = 207
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 98/199 (49%), Gaps = 37/199 (18%)
Query: 340 DDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSH 399
+D + RIPR E+ QM+ ++ +++ PE I GS+RRG S GD+DV++ HP+ S
Sbjct: 17 EDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPNFTSE 76
Query: 400 KG----FLSKYVKKLKEMKFLREDL------------IFSTHSEEVYPR---DIY----- 435
L + V++L++++F+ + L + S + E YP DI
Sbjct: 77 SSKQPKLLHRVVEQLQKVRFITDTLSKGETKFMGVCQLPSENDENEYPHRRIDIRLIPKD 136
Query: 436 ----AFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDT 491
+ + +TG R+R + G+ +++ + P G GV A L D+
Sbjct: 137 AEEKPYTIFHFTGPVSYLIRIR---AALGFTINEYTIRPL-----GVTGV-AGEPLPVDS 187
Query: 492 EKEVFDFLGFPWLEPHERN 510
E+++FD++ + + EP +R+
Sbjct: 188 EQDIFDYIQWRYREPKDRS 206
>gi|82702030|ref|YP_411596.1| PHP-like protein [Nitrosospira multiformis ATCC 25196]
gi|82410095|gb|ABB74204.1| PHP-like protein [Nitrosospira multiformis ATCC 25196]
Length = 598
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 76/331 (22%), Positives = 140/331 (42%), Gaps = 45/331 (13%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFK----IESADQVKGLPG 261
P N +I +F ++ N+ G + R +Y A+ I L + +E+ + + LPG
Sbjct: 2 PSHNADIAAVFEEIANLLEIEGANPFRIRAYRNAVQAIGALSTEAYVLLENKEDLTELPG 61
Query: 262 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLD 320
IG+ + I+EI+ TG + L+ + + L +V G+GP + LY + +T++
Sbjct: 62 IGRDLAGKIEEIIATGHCALLDRLQTELPPAVTELL-KVPGLGPKRVRHLYHDLDVQTVE 120
Query: 321 DL---KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP---------- 367
L E + G K +I I H ++ L A + P
Sbjct: 121 QLYGAAREGRIRALSGFGEKTELNILQAIEAHTDQKGRFKLAVAAQYAEPLRAFLADVPG 180
Query: 368 --EVIILCGGSYRRGKASCGDLDVVIM----HPDRKSHKGFLSKYVKKLKEMKFLREDLI 421
E I+ GSYRR + + GDLD+V+ P + G+ + V ++ R ++
Sbjct: 181 VKEAIV--AGSYRRMRETVGDLDIVVTAASGSPVMERFTGY--EEVAEILAAGSTRASVV 236
Query: 422 FSTHSE---EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGK 478
+ V + Y L +TG+ N +R +A+ KG ++++ G+F
Sbjct: 237 LKCGLQVDLRVVADESYGAALHYFTGSKAHNVAVRYIAQKKGLKVNEYGVF--------- 287
Query: 479 QGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
R + + +TE+ V+ G ++ P R
Sbjct: 288 ---RGKNRIAGETEESVYRAAGLSFIPPELR 315
>gi|297172010|gb|ADI22994.1| DNA polymerase IV (family X) [uncultured Planctomycetales bacterium
HF0500_40D21]
gi|297183360|gb|ADI19495.1| DNA polymerase IV (family x) [uncultured Planctomycetales bacterium
HF0500_40D21]
Length = 583
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 122/289 (42%), Gaps = 59/289 (20%)
Query: 259 LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHR 317
LPGIGK + + I IV TG+L++LE + +++ + G+GP L++ G
Sbjct: 58 LPGIGKDLAEKITSIVETGRLAQLEELREQVPAEVVAML-RIPGLGPKKVGVLFQDLGIE 116
Query: 318 TLDDLK---NEDSLTHSQRLGLKYFDDIKTRIP--RHE----------------VEQMER 356
+LD L+ +E + + G K I IP RH VE ++R
Sbjct: 117 SLDALEAAASEGVIAERKGFGAKTEQSILEGIPIARHGSTRTWLATARVAVDRIVEDLDR 176
Query: 357 LLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFL 416
L E + V + GS RR K + GDLDV+ + S+ + L E + +
Sbjct: 177 L------ESVTRVSL--AGSSRRLKETVGDLDVLATIAEGVES----SEVMAALAEHELV 224
Query: 417 REDLIFSTHSE----------------EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKG 460
E L + V P + Y + +TG+ N +R A+ +G
Sbjct: 225 EEVLAQGETKQRVRLLEREAGGLEMDLRVVPEESYGAAMQYFTGSKEHNIVVRRRAQERG 284
Query: 461 YRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
++++ G+FP + V R TE++V++ +G PW+ P R
Sbjct: 285 LKVNEYGVFPEN--DEDAKAVAGR------TEEDVYEAVGLPWIPPELR 325
>gi|357419195|ref|YP_004932187.1| PHP domain-containing protein [Thermovirga lienii DSM 17291]
gi|355396661|gb|AER66090.1| PHP domain protein [Thermovirga lienii DSM 17291]
Length = 581
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 135/311 (43%), Gaps = 44/311 (14%)
Query: 221 INIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLS 280
+N YR E+ RS + V + F +E GIGK++ + I E+VT G+L
Sbjct: 31 VNAYRRAAENIRSLGRDLSSMVQDGSIFAVE---------GIGKAIGEKITELVTKGRL- 80
Query: 281 KLEHFEK--DEKVRTISLFGEVWGIGPATAQKLYEKGHRT----LDDLKNEDSLTHSQRL 334
E++EK E R++ E+ +GP + ++EK T L++ L
Sbjct: 81 --EYYEKLSQEVPRSLLEILEIPDMGPKRVKAVWEKLKVTTIEELEEAAKSGRLAELPGF 138
Query: 335 GLKYFDDIKTRIP-RHEVEQMERL----------LQKAGEEVLPEVIILCGGSYRRGKAS 383
G K I I R + R+ + K G LP + I GGS+RR K +
Sbjct: 139 GPKSVARILAGIEERKRALETHRIPLVSAWILAEMVKEGLLGLPGLRIEVGGSFRRKKET 198
Query: 384 CGDLDVVI-MHPDRKSHKGFLS-KYVKKLKEMKFLREDLIFSTHSE---EVYPRDIYAFG 438
GDLD ++ H + + F S V+K+ + ++F + V R +
Sbjct: 199 VGDLDFLVSSHDPEAAVERFCSLPMVQKVLLRGSKKASVLFKGSIQGDLRVIERSRWGTA 258
Query: 439 LIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDF 498
L +TG+ N ++R LA KG+ L + F A GG + + A E+EV+ F
Sbjct: 259 LQYFTGSKEHNVQMRELALKKGFSLSEYS-FKAV--DGGDEILCAE-------EEEVYAF 308
Query: 499 LGFPWLEPHER 509
LG PW+ P R
Sbjct: 309 LGLPWILPELR 319
>gi|374983694|ref|YP_004959189.1| PHP domain-containing protein [Streptomyces bingchenggensis BCW-1]
gi|297154346|gb|ADI04058.1| PHP domain protein [Streptomyces bingchenggensis BCW-1]
Length = 580
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 136/324 (41%), Gaps = 74/324 (22%)
Query: 228 GEDRRSFSYYKAIPVIEKLPFKIESADQVKGL---PGIGKSMQDHIQEIVTTGKLSKLEH 284
G+ ++ +Y KA I P + D KGL PG+GKS+ D + E + TG + ++
Sbjct: 24 GDAFKARAYEKAARAIGGHPRDVSELD-AKGLREIPGVGKSIADKVVEYLRTGSVPAVDE 82
Query: 285 FEKD--EKVRTISLFGEVWGIGPATAQKLYEKGH-RTLDDLKNEDSLTHSQRLGLKYFDD 341
VR ++ + +GP A LYE+ H ++D L + H +L D
Sbjct: 83 VRAAIPAGVRQLT---AIPALGPKKAMLLYEELHIASVDQLSDA---IHDHKL-----RD 131
Query: 342 IKTRIPRHEVEQME--RLLQKAGEEVLPEVII-----------------LC--GGSYRRG 380
+K P+ E + L+Q AG+ V V + C GS RR
Sbjct: 132 LKGFGPKTEENILHGISLMQAAGDRVPLNVAMSVADDIVAELSRVTGCEACEYAGSLRRM 191
Query: 381 KASCGDLDVVIMHPDRKSHKGFLSKYVK---------------KLKEMKFLREDLIFSTH 425
K + GD+D+++ + F+ + + ++ K L+ DL
Sbjct: 192 KETVGDIDILVAADESIP---FMEAFTRLPYTAEVIARGEKKTSIRTTKGLQVDL----- 243
Query: 426 SEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRART 485
V P D + GL+ +TG+ N R+R +A G +L + GLF A K G R +
Sbjct: 244 --RVLPLDSWGAGLLYFTGSKAHNIRVRAIAMRHGLKLSEYGLFDA------KSGERIAS 295
Query: 486 SLKFDTEKEVFDFLGFPWLEPHER 509
+E++V+ LG W+ P R
Sbjct: 296 R----SEEDVYARLGMDWIPPTLR 315
>gi|448597005|ref|ZP_21654143.1| DNA polymerase X [Haloferax alexandrinus JCM 10717]
gi|445740886|gb|ELZ92391.1| DNA polymerase X [Haloferax alexandrinus JCM 10717]
Length = 582
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 135/334 (40%), Gaps = 46/334 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE-----SADQVKGLPGIGK 264
N I + + ++ A + SY +A + + P +E D V+ + +G
Sbjct: 4 NDEIATLLEEFADLLEAKDVAYKPSSYRRAAENVREHPTPVEELAEAGEDAVQEIDRVGD 63
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 323
++ I E V TG++ +LE +D V L V G+GP T KLYE G LDDL+
Sbjct: 64 AIAAKIVEYVETGRIEELEDLREDLPVDMAGLTS-VEGVGPKTVGKLYEALGVSDLDDLE 122
Query: 324 ---NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCG------ 374
+ + + G K +I I LL +A V +++ G
Sbjct: 123 AAARDGEIQAVKGFGAKTEANILDGIEFAREATGRELLGRA-RPVADDLLTYLGDYDAVG 181
Query: 375 -----GSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYV--------------KKLKEMKF 415
GS RR + + GD+DV+ D ++ + +++ K +
Sbjct: 182 RVEPAGSMRRWRETVGDIDVLAESADAEA---VIDRFLAWDLVGDTIEAGEQKASVRVNG 238
Query: 416 LREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS 475
+R DL SE Y L +TG+ N LR +A +G ++++ G+F +
Sbjct: 239 MRVDLRVVEPSE-------YGAALQYFTGSKDHNVHLRNIAIDRGLKMNEYGMFDISDVD 291
Query: 476 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
G RA T + DTE ++ L P + P R
Sbjct: 292 DPDDGPRAGTRVAGDTEASMYAALDLPLVPPELR 325
>gi|255514119|gb|EET90382.1| PHP domain protein [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 580
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 87/335 (25%), Positives = 144/335 (42%), Gaps = 54/335 (16%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFS------YYKAIPVIEKLP------FKIESADQVK 257
NK I +IF NI LG D S Y +A IE L + D +
Sbjct: 5 NKEIADIFN---NIAAMLGIDNSPSSKFEIRAYQRAALTIEGLQEDLGLIYGRGGIDALM 61
Query: 258 GLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GH 316
LPGIGK + I+E + TG++ K E K + + L ++ G+G LY++ G
Sbjct: 62 ELPGIGKGLAQKIEEYLKTGRIRKYEEMRKKYPIDFVEL-SKIEGLGAKKIGVLYKRLGV 120
Query: 317 RTLDDLKNEDSLTHSQRL-------------GLKYFDDIKTRIPRHEV-EQMERLLQKAG 362
+ ++ LK+ + L G+K + K R+ +V + E ++ K
Sbjct: 121 KDVETLKDALEKHKVRELAGFGAKSEEVLADGIKILESSKGRLLLGDVLPEAESIVSKLA 180
Query: 363 EEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY--VKKL------KEMK 414
L E +++ GS RR + + GD+D++ + + F S VK + K
Sbjct: 181 GSGLAEGVVIA-GSIRRMRETVGDIDILALSKSPEKVMDFFSGMDEVKSIISKGPTKTTV 239
Query: 415 FLREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYG 474
+L+ I ++ V D + + +TG+ N +R +A KGY+L++ GLF
Sbjct: 240 WLK---IGTSCDLRVIEPDSFGAAIQYFTGSKNHNIGVRTIAVKKGYKLNEYGLFE---- 292
Query: 475 SGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
K G R +SL E+ ++ LG W+ P R
Sbjct: 293 ---KSG-RLISSL---NEETIYAKLGMQWIPPEMR 320
>gi|225873244|ref|YP_002754703.1| PHP domain-containing protein [Acidobacterium capsulatum ATCC
51196]
gi|225793638|gb|ACO33728.1| PHP domain protein [Acidobacterium capsulatum ATCC 51196]
Length = 580
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 80/313 (25%), Positives = 126/313 (40%), Gaps = 45/313 (14%)
Query: 228 GEDRRSFSYYKAIPVIEKLPFKIES----ADQVKGLPGIGKSMQDHIQEIVTTGKLSKLE 283
G+ R SY +A +E + + A +++ +PGIGK M +I +I TG
Sbjct: 22 GDSFRIRSYRRAAEAVEATTVTLATIAGDAKKLQEIPGIGKGMAANIAQIEETGSFDLRR 81
Query: 284 HFEKDEKVRTISLFGEVWGIGPATAQKLYEK----GHRTLDDLKNEDSLTHSQRLGLKYF 339
+ + L ++ G+GP T L+ TL+ L R G K
Sbjct: 82 ELLEKYNASILELL-KLPGMGPKTVALLFSALKVDSIETLEAALKAGKLNGLPRFGKKLI 140
Query: 340 DDIKTRIP---RHEVEQMERLLQKAGEEVLPEVIILCG-------GSYRRGKASCGDLDV 389
D+IK I +H + + Q+A +E+ + L G GS RRG+ + GDLD+
Sbjct: 141 DNIKKGIEEYRQHHGRFLVSVSQRAADEIAEYLRKLEGIETVTPAGSTRRGRETAGDLDL 200
Query: 390 VIMHPD------------RKSHKGFLSKYVKKLKEMKF-LREDLIFSTHSEEVYPRDIYA 436
++ P S+ G S + ++ F L L + P + Y
Sbjct: 201 LVTGPACAEDVCAEAVEYTASYPGIDSMIARGQNKVSFKLHNGLQVDVR---LLPEESYG 257
Query: 437 FGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVF 496
L +TG+ + N LR A +GY L + L GS V AR TE+E++
Sbjct: 258 AALQYFTGSKMHNVTLRQRALRRGYTLSEYALANVADGS----VVAAR------TEEEIY 307
Query: 497 DFLGFPWLEPHER 509
L W+ P R
Sbjct: 308 AALDLDWIPPELR 320
>gi|448369652|ref|ZP_21556204.1| PHP domain-containing protein [Natrialba aegyptia DSM 13077]
gi|445650827|gb|ELZ03743.1| PHP domain-containing protein [Natrialba aegyptia DSM 13077]
Length = 593
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 127/294 (43%), Gaps = 49/294 (16%)
Query: 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY- 312
D ++ + G+G ++ I E V TG + +LE + + + I+ + G+GP TA KLY
Sbjct: 54 DAIEDIDGVGDAIATKIVEYVETGSIDELEELQAELPI-DIADITRIEGVGPKTAGKLYH 112
Query: 313 EKGHRTLDDLKNEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVL 366
E G TLDDL+ Q + G K +I+ I +LL +A ++VL
Sbjct: 113 ELGIETLDDLEAAAEANEIQAVSGFGPKTEQNIRDNIEFAREVGTRQLLGEARPLADDVL 172
Query: 367 PEV-----IILC--GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYV------------ 407
E+ + C GS RR + + GD+DV++ D ++ + ++V
Sbjct: 173 AELEGIEEVERCEVAGSIRRWRETIGDVDVLVGTNDNEA---VIEQFVEWDSVDSEIESG 229
Query: 408 --KKLKEMKFLREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDD 465
K + +R DL V D + L +TG+ N LR A +G ++++
Sbjct: 230 PAKASVRVGEIRVDL-------RVVVPDEFGAALQYFTGSKDHNVSLRNYAIDRGLKVNE 282
Query: 466 TGLFPATYGSGGKQG----------VRARTSLKFDTEKEVFDFLGFPWLEPHER 509
G+F + G G R L +TE+ +++ LG W+ P R
Sbjct: 283 YGVFDVSEVDAGPDGDGSDSATDGSQRVGDRLAGETEEGMYEALGLDWMPPELR 336
>gi|32471446|ref|NP_864439.1| DNA polymerase beta family protein [Rhodopirellula baltica SH 1]
gi|32443287|emb|CAD72118.1| DNA polymerase beta family [Rhodopirellula baltica SH 1]
Length = 589
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 78/347 (22%), Positives = 142/347 (40%), Gaps = 74/347 (21%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKL--PFKIESAD---QVKGLP 260
P N + +F +L + GE+ R +Y I L P ++D + LP
Sbjct: 12 PMDNSAVAAVFEELAELLEFRGENPFRIRAYQNGARAIRDLDEPIANLASDPERDLSKLP 71
Query: 261 GIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTL 319
GIGK++ + + ++ TG L +LE ++ + + G+G A KL E+ G +L
Sbjct: 72 GIGKTIAEKTKVLLETGSLPQLEEL-REAVPEVVIQMSRIPGLGAKKASKLREELGIESL 130
Query: 320 DDL-----------------KNEDSL--------THSQRLGLKYFDDIKTRIPRH----- 349
+DL K E ++ S+R+ DD+ I +H
Sbjct: 131 EDLAAACREGRVASLKGFAKKTEAAILDGMAIAKAASERIYWSKADDLTREIGKHMQVCD 190
Query: 350 EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKK 409
+EQME GSYRRG+ + GDLD++ + DR++ L+ +
Sbjct: 191 AIEQME-----------------WAGSYRRGRDTVGDLDLLAVASDREAAMDHLANFPGL 233
Query: 410 LKEMKFLREDLIFSTHSEEVYPRDI-------YAFGLIAWTGNDVLNRRLRLLAESKGYR 462
+ + D S + + D+ + L +TG+ N +R +A+ G +
Sbjct: 234 VSVIG--SGDTKMSIRVGKAFQVDMRLVDAEEFGAALQYFTGSQAHNIHVRRIAKDHGLK 291
Query: 463 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+++ G+F + + + TE++V+ +G PW+ P R
Sbjct: 292 INEYGVFK----------LDDESRVAGATEEDVYQSIGLPWIAPELR 328
>gi|71411546|ref|XP_808017.1| mitochondrial DNA polymerase beta-PAK [Trypanosoma cruzi strain CL
Brener]
gi|70872136|gb|EAN86166.1| mitochondrial DNA polymerase beta-PAK, putative [Trypanosoma cruzi]
Length = 332
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 100/235 (42%), Gaps = 63/235 (26%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEK-------LPFKI--------- 250
PD + + +IF +L I AL E ++ SY A+ +++ LP I
Sbjct: 98 PDHREKVLQIFQRLAEINNALQERYKAQSYQIAVDNLKRDDFIFVHLPPNILPPGVDDAK 157
Query: 251 --ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATA 308
E + V P +G+ ++ I EI++ G L++L + +R I +V G+GP TA
Sbjct: 158 RTEQLNAVNATPVVGEKLKAKIVEILSMGDLAELHSLQAKPIIRAIQELTQVHGVGPRTA 217
Query: 309 QKLYEK-GHRTLDDLK--------------------------------------NEDS-- 327
Y+K G +++ +L+ +ED
Sbjct: 218 VTFYKKYGIKSVAELQQRVKDHEAEKGIGDGDRDGGNCGNSGGAKKGSKKTSAGDEDPVL 277
Query: 328 -LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE--VIILCGGSYRR 379
LT +QRLGLKY DI RIP EV E L+ + L + + +C GSYRR
Sbjct: 278 HLTEAQRLGLKYHRDIMQRIPYEEVRLHEAFLKLRLRKYLGKGYELSIC-GSYRR 331
>gi|257389025|ref|YP_003178798.1| PHP domain-containing protein [Halomicrobium mukohataei DSM 12286]
gi|257171332|gb|ACV49091.1| PHP domain protein [Halomicrobium mukohataei DSM 12286]
Length = 577
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 81/325 (24%), Positives = 136/325 (41%), Gaps = 30/325 (9%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIES-----ADQVKGLPGIGK 264
N I F ++ A G D + +Y +A I + P +E D V + G+G
Sbjct: 4 NDEIARQFEAFADLLDAKGVDYKPRAYRRAAENIREYPQAVEGLAQEGEDAVGEIDGVGD 63
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 323
++ + E V TG + +LE ++E ++ V G+GP TA LYE+ G TLDDL+
Sbjct: 64 AIASKVVEYVDTGHIEELEAL-REEYPLDMAAITSVEGVGPKTAGTLYEELGIETLDDLE 122
Query: 324 NEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVLPEVIIL----- 372
+ Q + G K +I I +LL A GE V+ + +
Sbjct: 123 SAAEAGDIQTVKGFGAKTEQNILDGIDFAREAHERQLLGDARPNGERVVEYLDTVDAIAS 182
Query: 373 --CGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY------VKKLKEMKFLREDLIFST 424
GS RR +A+ GD+DV++ D + + + ++ LR D +
Sbjct: 183 VELAGSLRRWRATIGDVDVLVGSDDAERVVAAFADWPEADSVIEAGDTKASLRADGV-RI 241
Query: 425 HSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRAR 484
V P + + L +TG+ N +R A + ++++ G+F Q RA
Sbjct: 242 DLRVVVPEE-FGAALQYFTGSKAHNVAVRNRAIERDLKVNEYGIFDVAGVEDDDQ--RAG 298
Query: 485 TSLKFDTEKEVFDFLGFPWLEPHER 509
+ +TE V++ L W+ P R
Sbjct: 299 ERIGGETEASVYEPLEMDWVPPELR 323
>gi|448561173|ref|ZP_21634525.1| DNA polymerase X [Haloferax prahovense DSM 18310]
gi|445721405|gb|ELZ73073.1| DNA polymerase X [Haloferax prahovense DSM 18310]
Length = 582
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 133/334 (39%), Gaps = 46/334 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP-----FKIESADQVKGLPGIGK 264
N I + + ++ A + SY +A + + P E D V+ + +G
Sbjct: 4 NDEIASLLEEFADLLEAKDVAYKPSSYRRAAENVREHPKPVEELAAEGEDAVQEIDRVGD 63
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 323
++ I E V TG++ +LE D V L V G+GP T KLYE G LDDL+
Sbjct: 64 AIASKIVEYVETGRIEELEELRADLPVDMAGLTS-VEGVGPKTVGKLYEALGVADLDDLE 122
Query: 324 ---NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCG------ 374
+ + + G K +I I LL KA V +++ G
Sbjct: 123 AAARDGKIQEVKGFGAKTEANILDGIEFAREATGRELLGKA-RPVADDLLAYLGGHDAVG 181
Query: 375 -----GSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYV--------------KKLKEMKF 415
GS RR + + GD+DV+ D ++ + +++ K +
Sbjct: 182 RVEPAGSMRRWRETVGDIDVLAESADAEA---VIDRFLAWDLVGDTIEAGEQKASVRVNG 238
Query: 416 LREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS 475
+R DL +E Y L +TG+ N LR +A +G ++++ G+F +
Sbjct: 239 MRVDLRVVDPAE-------YGAALQYFTGSKDHNVHLRNIAIDRGLKMNEYGMFDISDVD 291
Query: 476 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
G RA + DTE+ ++ L P + P R
Sbjct: 292 DPDDGPRAGARVAGDTEESMYAALDLPLVPPEMR 325
>gi|339435|gb|AAA61136.1| terminal deoxynucleotidyltransferase, partial [Homo sapiens]
Length = 238
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 99/246 (40%), Gaps = 62/246 (25%)
Query: 317 RTLDDLKNEDSL--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCG 374
RTL ++++ SL T Q+ G Y++D+ + + R E E + L+++A LP+ +
Sbjct: 2 RTLSKVRSDKSLKFTRMQKAGFLYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFVTMT 61
Query: 375 GSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMK--FLREDLIFST-------- 424
G +RRGK D+D +I P + L + V L E K L DL+ ST
Sbjct: 62 GGFRRGKKMGHDVDFLITSPGSTEDEEQLLQKVMNLWEKKGLLLYYDLVESTFEKLRLPS 121
Query: 425 -------HSEEVY---------------------------------PRDIYAFGLIAWTG 444
H ++ + P + AF L+ WTG
Sbjct: 122 RKVDALDHFQKCFLIFKLPRQRVDSDQSSWQEGKTWKAIRVDLVLCPYERRAFALLGWTG 181
Query: 445 NDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWL 504
+ R + LD+ L+ T R LK ++E+E+F LG ++
Sbjct: 182 SRFERDLRRYATHERKMILDNHALYDKT----------KRIFLKAESEEEIFAHLGLDYI 231
Query: 505 EPHERN 510
EP ERN
Sbjct: 232 EPWERN 237
>gi|443694526|gb|ELT95637.1| hypothetical protein CAPTEDRAFT_213338 [Capitella teleta]
Length = 400
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 84/167 (50%), Gaps = 15/167 (8%)
Query: 230 DRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDE 289
+ R+ ++ + + I L I+ +KGLP IGK ++ +Q+I+ TG H E+ E
Sbjct: 156 NSRALAFRRGMCTIASLENPIKRWSDIKGLPHIGKHIELVVQDILETG------HSEEAE 209
Query: 290 KVRTISLF---GEVWGIGPATAQKLYEKGHRTLDD-LKNEDSLTH-SQRL--GLKYFDDI 342
+++ F V+G+GP+TAQK + G R + D +++ D H +RL GL + D+
Sbjct: 210 CIQSSVWFKVVDGVFGVGPSTAQKWFNAGFRNICDVIQSSDVQNHRDERLLYGLAFHADL 269
Query: 343 KTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRR--GKASCGDL 387
+ + E E L++K + PE + G + G +C ++
Sbjct: 270 NIPVCKSEAVFWEDLVKKELAAIDPEATVTLTGGFSSYGGIGTCTNI 316
>gi|358393213|gb|EHK42614.1| hypothetical protein TRIATDRAFT_35082, partial [Trichoderma
atroviride IMI 206040]
Length = 110
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 52/95 (54%)
Query: 326 DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
SL +Q++G+KY+ D + RIPR E E + ++ + P ++ SYR+GK G
Sbjct: 1 SSLQRAQQIGVKYYVDFQLRIPRAETEAIANVIFTHARRINPGFQMVIVSSYRQGKLESG 60
Query: 386 DLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDL 420
D++V+I HPD + + + L++ F++ L
Sbjct: 61 DVNVIISHPDEAQTLNVVKRLIYILEKSSFIKHTL 95
>gi|15606601|ref|NP_213981.1| DNA polymerase beta family protein [Aquifex aeolicus VF5]
gi|2983818|gb|AAC07374.1| DNA polymerase beta family [Aquifex aeolicus VF5]
Length = 581
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 79/328 (24%), Positives = 146/328 (44%), Gaps = 41/328 (12%)
Query: 210 NKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIESADQVKGL---PGIGKS 265
N+ + +IF ++ +I LGE+ R +Y + +I +L +E A + L PGIG+S
Sbjct: 5 NQELAKIFERMADILEFLGENPYRIRTYRRVANLISELQEDVEKAFYTRKLHHMPGIGES 64
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKN 324
I+E + TG + K E + + L + G+GP T + YE+ G RT ++
Sbjct: 65 TLLKIEEFLKTGTIKKYEELRRMVPEDLLELL-DAPGVGPKTLKIAYEQLGIRTKEEFIE 123
Query: 325 EDSLTHSQRL-------------GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEV-I 370
++ G++ ++ K RI E M + + K E + +
Sbjct: 124 ALKKGKFNKIRGFGPVKALKILRGIELWEKSKERISLIEAYPMAQEVLKYMERIKDKYEN 183
Query: 371 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFL-----REDLIFSTH 425
I GS RR K + GD+D+++ +++ K + K ++ L + +I T
Sbjct: 184 ISIAGSLRRMKETIGDIDILV-SAKKENWKAIHEHFTKYPGLLEVLAKGETKSSIILDT- 241
Query: 426 SEEVYPRDI----YAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGV 481
+V R + + L +TG+ N R+R +A+ KG ++++ G+F V
Sbjct: 242 GRQVDLRTVEPISWGAALQYFTGSKQHNIRIRDIAKEKGLKVNEYGVFK----------V 291
Query: 482 RARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ +TE+ V++ LG W+ P R
Sbjct: 292 DTEERIAGETEEGVYEVLGMQWIPPELR 319
>gi|448399930|ref|ZP_21571148.1| PHP domain protein [Haloterrigena limicola JCM 13563]
gi|445668052|gb|ELZ20686.1| PHP domain protein [Haloterrigena limicola JCM 13563]
Length = 583
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 142/334 (42%), Gaps = 45/334 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPF----KIESADQ--VKGLPGIG 263
N + F + ++ A G + + +Y +A + P ++++ D+ V+ + G+G
Sbjct: 4 NAELAARFEEFADLLEADGVEYKPRAYRRAAENVRAYPSPIADRVDAGDREAVESIEGVG 63
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDL 322
++ I E V TG + +LE + + + + G+GP TA KLY E G TLDDL
Sbjct: 64 DAIASKIVEYVETGSIEELEELRAELPIDMADIT-RIEGVGPKTAGKLYRELGIETLDDL 122
Query: 323 KNEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVLP-----EVII 371
+ Q + G K +I + +LL +A ++VL + +
Sbjct: 123 EAAAEAGEVQEVKGFGPKTEQNILDNLEFARTVGQRQLLGEARPLADDVLAFLESIDAVE 182
Query: 372 LC--GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYV--------------KKLKEMKF 415
C GS RR +A+ GD+D ++ R+ + ++V K +
Sbjct: 183 RCEVAGSIRRWRATIGDVDALVATDARED---VIDQFVAWESVDDEIESGPEKASVRVGE 239
Query: 416 LREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS 475
+R DL V P + + L +TG+ N LR A +G +L++ G F
Sbjct: 240 IRVDLRV------VVPEE-FGSALQYFTGSKDHNVSLRNYAIDRGMKLNEYGAFDVNEID 292
Query: 476 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
G R + +TE+ ++D LG PW+ P R
Sbjct: 293 DPDSGQRVGERVAGETEESMYDALGLPWIPPELR 326
>gi|386002425|ref|YP_005920724.1| PHP C-terminal domain-containing protein, partial [Methanosaeta
harundinacea 6Ac]
gi|357210481|gb|AET65101.1| PHP C-terminal domain protein [Methanosaeta harundinacea 6Ac]
Length = 572
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 75/330 (22%), Positives = 146/330 (44%), Gaps = 48/330 (14%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESA---DQVKGLPGIGKS 265
N+ + + ++ ++ GE + +Y +A +E + +E+ +++ +PG+GK+
Sbjct: 3 NEEVARLLREMGDLLELRGESSFKVVAYRRAARTVESMKEDLEAIAGRGELEAIPGVGKA 62
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKN 324
+ I E + TG++ + ++ L ++ G+GP T L++K G T+ +L+
Sbjct: 63 IAGKISEFLETGRIEARDRLLQETPPGLAELL-QISGLGPKTVSMLHQKLGVSTVAELEV 121
Query: 325 EDSLTHSQRL-------------GLKYFDDIKTRIP-------RHEVEQMERLLQKAGEE 364
+RL G++ + +RIP E+ R ++ G+
Sbjct: 122 AAREHRVRRLPRMGPTSEKNILRGIERWKKRSSRIPLGVALPLAQEILGHLRKVEGIGD- 180
Query: 365 VLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSH-KGFLSKYVKKLKEMKFLREDLIFS 423
+ GS RRG+ + GD+D++ P ++ + F+S V + MK + +
Sbjct: 181 ------LNVAGSLRRGRETVGDIDILATSPAPEAAIRAFVSIPVVEEVLMKGPTKASVIV 234
Query: 424 THSEEVYPR--DIYAFGLIA--WTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQ 479
+ +V R D +FG + +TG+ N +LR +A SKGY L + L G
Sbjct: 235 EETIQVDLRIVDPRSFGTVIQYFTGSKEHNVKLRHVALSKGYSLSEYSLTRLADGE---- 290
Query: 480 GVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
L FD E++++ LG W+ P R
Sbjct: 291 ------ELFFDREEDLYHHLGMDWIPPEIR 314
>gi|429192003|ref|YP_007177681.1| DNA polymerase IV [Natronobacterium gregoryi SP2]
gi|448324754|ref|ZP_21514166.1| PHP domain-containing protein [Natronobacterium gregoryi SP2]
gi|429136221|gb|AFZ73232.1| DNA polymerase IV (family X) [Natronobacterium gregoryi SP2]
gi|445617717|gb|ELY71310.1| PHP domain-containing protein [Natronobacterium gregoryi SP2]
Length = 583
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 85/331 (25%), Positives = 139/331 (41%), Gaps = 39/331 (11%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE---SADQ---VKGLPGIG 263
N I F + ++ A + + +Y +A + P I +AD ++G+ G+G
Sbjct: 4 NAEIAGRFEEFADLLEADDVEYKPRAYRRAAENVRSHPTPIADYVAADDREAIEGIEGVG 63
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDL 322
++ I E V TG + +LE + I+ + G+GP TA KLY E G TLDDL
Sbjct: 64 DAIASKIVEYVETGAIEELEELRAALPI-DIADITRIEGVGPKTAGKLYRELGIETLDDL 122
Query: 323 KNEDSLTHSQRL---GLKYFDDIKTRIP-RHEVEQMERLLQ--KAGEEVLP-----EVII 371
+ Q + G K +I+ + EV Q L + ++VL E +
Sbjct: 123 EAAAEAGEIQAVKGFGPKTEQNIRDNLEFAREVGQRHLLGEGRPLADDVLAYLEDLETVE 182
Query: 372 LC--GGSYRRGKASCGDLDVVIMHPDRKS-HKGFL----------SKYVKKLKEMKFLRE 418
C GS RR + + GD+DV+ ++ + F+ S K + +R
Sbjct: 183 RCEVAGSIRRWRETIGDVDVLAATDAPEAVVEAFVDWGSVGSEIESGPAKASVRIGEIRV 242
Query: 419 DLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGK 478
DL E + L +TG+ N RLR A +G +L++ G F + +
Sbjct: 243 DLRVVAPEE-------FGSALQYFTGSKDHNVRLRNYAIDQGMKLNEYGAFDVSDLEDAE 295
Query: 479 QGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
G R + DTE +++ LG W+ P R
Sbjct: 296 DGQRVGDRVAGDTEAGMYEALGLSWMPPELR 326
>gi|238577033|ref|XP_002388251.1| hypothetical protein MPER_12749 [Moniliophthora perniciosa FA553]
gi|215449367|gb|EEB89181.1| hypothetical protein MPER_12749 [Moniliophthora perniciosa FA553]
Length = 332
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 96/196 (48%), Gaps = 16/196 (8%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPG--IGKSMQ 267
N+++ I GK + + + S+ +AI V+ L I A+ VK L G IG S+Q
Sbjct: 15 NRHVQPIKGKEVEEESPVRNPYKVRSFQRAINVVGGLDKPIGKAEDVKALKGLGIGSSIQ 74
Query: 268 DHIQEIV----TTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 323
I +++ T K+ E + K+ +V IGP A++L KG ++DDL
Sbjct: 75 KRIVDLLNGNYTPRKVDPEERKNEQRKLLIRLELEKVPYIGPTAAEQLVNKGCESIDDLL 134
Query: 324 NED---SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE--VIILCGGSYR 378
+ L +QR+G+K++ ++ + R E E + L++ E +P +I+C GSYR
Sbjct: 135 RKKYFIELKPTQRIGVKFYQHLQQPVVREEAEAIAELVR----ETMPADGDVIIC-GSYR 189
Query: 379 RGKASCGDLDVVIMHP 394
R + ++I HP
Sbjct: 190 RNFPIASSVVLLIQHP 205
>gi|349576753|dbj|GAA21923.1| K7_Pol4p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 581
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 143/347 (41%), Gaps = 65/347 (18%)
Query: 65 DLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQ 124
D++ L ++ + + K S I +W+++ +K +DL IK P I+D
Sbjct: 77 DVDEFLGKIEQSGIQCVKTSCIT-KWVQNDKFAFQK--DDL--IKFQPSIIVISD----- 126
Query: 125 IQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPM--SSESLTNT 182
+ DG+SS K+ + ST DVE+ ++ N M +S+ L
Sbjct: 127 ------NADDGQSSTDKESEIST------------DVESERNDDSNNKDMIQASKPLKRL 168
Query: 183 LSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPV 242
L +TD + N N+ I +L Y GE R+ SY A
Sbjct: 169 LQEDKGRASL----VTDKTKYKN----NELIIGALKRLTKKYEIEGEKFRARSYRLAKQS 220
Query: 243 IEKLPFKIESADQV-KGLPGIGKSMQDHIQEIVTTGKLSKL-EHFEKDEKVRTISLFGEV 300
+E F + S ++ L IG S+ IQ I+ TG L L + ++K++ F
Sbjct: 221 MENCDFNVRSGEEAHTKLRNIGPSIAKKIQVILDTGVLPGLNDSVGLEDKLK---YFKNC 277
Query: 301 WGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQR-------------LGLKYFDDIKTRIP 347
+GIG A++ +L N +S + + G Y+DD ++
Sbjct: 278 YGIGSEIAKRW---------NLLNFESFCVAAKKDPEEFVSDWTILFGWSYYDDWLCKMS 328
Query: 348 RHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
R+E + +QKA + PE + GSY RG + CGD+D++ P
Sbjct: 329 RNECFAHLKKVQKALRGIDPECQVELQGSYNRGYSKCGDIDLLFFKP 375
Score = 41.6 bits (96), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 12/74 (16%)
Query: 438 GLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFD 497
G I +TG+ NR +R+LA KG++L GLF R L+ E+ +F+
Sbjct: 513 GRIHYTGSKEYNRWIRILAAQKGFKLTQHGLF------------RNNILLESFNERRIFE 560
Query: 498 FLGFPWLEPHERNL 511
L + EP RN+
Sbjct: 561 LLNLKYAEPEHRNI 574
>gi|336476630|ref|YP_004615771.1| PHP domain-containing protein [Methanosalsum zhilinae DSM 4017]
gi|335930011|gb|AEH60552.1| PHP domain protein [Methanosalsum zhilinae DSM 4017]
Length = 573
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/298 (24%), Positives = 140/298 (46%), Gaps = 38/298 (12%)
Query: 235 SYYKAIPVIEKLP------FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKD 288
+Y KA IE L ++ E + +K + GIG ++ HI E + TGK+ K E +K
Sbjct: 28 AYRKAARGIENLTEDISDIYEREGTEGLKSITGIGSNICTHIVEYLKTGKIEKFEKLKK- 86
Query: 289 EKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKN---EDSLTHSQRLGLK----YFD 340
+ + S E+ G+GP T +KL+ E +++ DL++ + + + +G K +
Sbjct: 87 QSMSGASELIEIEGLGPKTIRKLHDELDIKSISDLRDAILKHKIQELEGMGEKTEQNLLE 146
Query: 341 DIKTRIPRHEVEQMERLLQKAGEEVLPEV-------IILCGGSYRRGKASCGDLDVVIMH 393
I+ HE Q++ ++ A E+V+ + II GS RR K + GD+DV+ +
Sbjct: 147 AIRNFEKSHERMQIDVAIETA-EDVISYLKEQNKPDIINYAGSLRRMKETIGDIDVLAVT 205
Query: 394 PDRKSH-KGFLS-KYVKKLKEMKFLREDLIFSTHSE---EVYPRDIYAFGLIAWTGNDVL 448
+ + + F++ + ++++ R ++ V + Y + +TG+
Sbjct: 206 DNSEELIESFVNMEDIERIVSKGRTRSTVVLKNGVSVDIRVIKNESYGSAMQYFTGSKQH 265
Query: 449 NRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEP 506
N LR +A KGY+L + GLF G + + R +E+ ++ LG ++ P
Sbjct: 266 NIELRNIALEKGYKLSEYGLFEKESG----KKIEGR------SEERIYGTLGLAFIPP 313
>gi|10383782|ref|NP_009940.2| Pol4p [Saccharomyces cerevisiae S288c]
gi|46397824|sp|P25615.4|DPO4_YEAST RecName: Full=DNA polymerase IV; Short=POL IV
gi|14588928|emb|CAA42331.2| DNA polymerase [Saccharomyces cerevisiae]
gi|256271878|gb|EEU06905.1| Pol4p [Saccharomyces cerevisiae JAY291]
gi|285810707|tpg|DAA07491.1| TPA: Pol4p [Saccharomyces cerevisiae S288c]
gi|290770666|emb|CAY78217.2| Pol4p [Saccharomyces cerevisiae EC1118]
Length = 582
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 143/347 (41%), Gaps = 65/347 (18%)
Query: 65 DLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQ 124
D++ L ++ + + K S I +W+++ +K +DL IK P I+D
Sbjct: 77 DVDEFLGKIEQSGIQCVKTSCIT-KWVQNDKFAFQK--DDL--IKFQPSIIVISD----- 126
Query: 125 IQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPM--SSESLTNT 182
+ DG+SS K+ + ST DVE+ ++ N M +S+ L
Sbjct: 127 ------NADDGQSSTDKESEIST------------DVESERNDDSNNKDMIQASKPLKRL 168
Query: 183 LSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPV 242
L +TD + N N+ I +L Y GE R+ SY A
Sbjct: 169 LQGDKGRASL----VTDKTKYKN----NELIIGALKRLTKKYEIEGEKFRARSYRLAKQS 220
Query: 243 IEKLPFKIESADQV-KGLPGIGKSMQDHIQEIVTTGKLSKL-EHFEKDEKVRTISLFGEV 300
+E F + S ++ L IG S+ IQ I+ TG L L + ++K++ F
Sbjct: 221 MENCDFNVRSGEEAHTKLRNIGPSIAKKIQVILDTGVLPGLNDSVGLEDKLK---YFKNC 277
Query: 301 WGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQR-------------LGLKYFDDIKTRIP 347
+GIG A++ +L N +S + + G Y+DD ++
Sbjct: 278 YGIGSEIAKRW---------NLLNFESFCVAAKKDPEEFVSDWTILFGWSYYDDWLCKMS 328
Query: 348 RHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
R+E + +QKA + PE + GSY RG + CGD+D++ P
Sbjct: 329 RNECFTHLKKVQKALRGIDPECQVELQGSYNRGYSKCGDIDLLFFKP 375
Score = 41.6 bits (96), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 12/74 (16%)
Query: 438 GLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFD 497
G I +TG+ NR +R+LA KG++L GLF R L+ E+ +F+
Sbjct: 514 GRIHYTGSKEYNRWIRILAAQKGFKLTQHGLF------------RNNILLESFNERRIFE 561
Query: 498 FLGFPWLEPHERNL 511
L + EP RN+
Sbjct: 562 LLNLKYAEPEHRNI 575
>gi|297566359|ref|YP_003685331.1| PHP domain-containing protein [Meiothermus silvanus DSM 9946]
gi|296850808|gb|ADH63823.1| PHP domain protein [Meiothermus silvanus DSM 9946]
Length = 576
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/333 (22%), Positives = 145/333 (43%), Gaps = 54/333 (16%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIE-----SADQVKGLPGIG 263
N I+ +F ++ ++ LG++ R +Y +A V+ L IE + ++G+PGIG
Sbjct: 3 NAEISRLFQEMADMLEFLGDNPFRIRAYRQAARVLADLETPIEDLARQGPNTLEGIPGIG 62
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 323
+ IQE + +GK++ E + + + + G+GP TAQ L+ + +D L
Sbjct: 63 PDLAAKIQEYLQSGKIAAHEELARKVPAGVLEVM-RIPGVGPKTAQLLWSR--LGVDSLA 119
Query: 324 NEDSLTHSQRL----------GLKYFDDIKTRIPRHEVEQMERLLQKAGEEV-----LPE 368
+ S+R+ L+ +++ + + +L + E + LP+
Sbjct: 120 KLRAALESKRVLELPRFGEKKRLRLLENLALAQSATQRRPLGSVLWRVRELLAAIRGLPQ 179
Query: 369 V-IILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY-----------VKKLKEMKFL 416
V C GS RR K + GDLD ++ + + L+++ V + + FL
Sbjct: 180 VEQAECCGSVRRYKETVGDLDFLVAT---RQGEQVLARFTQLPGIADVEAVGENRATVFL 236
Query: 417 REDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSG 476
+ L ++ P + + GL TG+ + RLR LA +G +L++ G++
Sbjct: 237 EDGLQVDL---KIVPPESWGSGLQYLTGSKAHSIRLRKLALEQGLKLNEYGVWKGEKRIA 293
Query: 477 GKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
G+ E+ V+ LG P++ P R
Sbjct: 294 GRD------------EESVYAALGLPFIPPPLR 314
>gi|392300802|gb|EIW11892.1| Pol4p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 589
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 86/346 (24%), Positives = 139/346 (40%), Gaps = 63/346 (18%)
Query: 65 DLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQ 124
D++ L ++ + + K S I +W+++ +K +DL IK P I+D
Sbjct: 77 DVDEFLGKIEQSGIQCVKTSCIT-KWVQNDKFAFQK--DDL--IKFQPSIIVISD----- 126
Query: 125 IQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPM--SSESLTNT 182
+ DG+SS K+ + ST DVE+ ++ N M +S+ L
Sbjct: 127 ------NADDGQSSTDKESEIST------------DVESERNDDSNNKDMIQASKPLKRL 168
Query: 183 LSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPV 242
L +TD + N N+ I +L Y GE R+ SY A
Sbjct: 169 LQGDKGRASL----VTDKTKYKN----NELIIGALKRLTKKYEIEGEKFRARSYRLAKQS 220
Query: 243 IEKLPFKIESADQV-KGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVW 301
+E F + S ++ L IG S+ IQ I+ TG L L E + F +
Sbjct: 221 MENCDFNVRSGEEAHTKLRNIGPSIAKKIQVILDTGVLPGLNDSVGLED--KLKYFKNCY 278
Query: 302 GIGPATAQKLYEKGHRTLDDLKNEDSLTHSQR-------------LGLKYFDDIKTRIPR 348
GIG A++ +L N +S + + G Y+DD ++ R
Sbjct: 279 GIGSEIAKRW---------NLLNFESFCVAAKKDPEEFVSDWTILFGWSYYDDWLCKMSR 329
Query: 349 HEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
+E + +QKA + PE + GSY RG + CGD+D++ P
Sbjct: 330 NECFTHLKKVQKALRGIDPECQVELQGSYNRGYSKCGDIDLLFFKP 375
Score = 41.6 bits (96), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 12/74 (16%)
Query: 438 GLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFD 497
G I +TG+ NR +R+LA KG++L GLF R L+ E+ +F+
Sbjct: 514 GRIHYTGSKEYNRWIRILAAQKGFKLTQHGLF------------RNNILLESFNERRIFE 561
Query: 498 FLGFPWLEPHERNL 511
L + EP RN+
Sbjct: 562 LLNLKYAEPEHRNI 575
>gi|354611985|ref|ZP_09029937.1| PHP domain protein [Halobacterium sp. DL1]
gi|353191563|gb|EHB57069.1| PHP domain protein [Halobacterium sp. DL1]
Length = 582
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 123/284 (43%), Gaps = 33/284 (11%)
Query: 251 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK 310
E + V+ + G+G+++ I E V TG++++LE + V I V G+GP T
Sbjct: 50 EGVEAVQRIDGVGEAIAAKIVEYVETGEIAELEEEREKLPV-DIEELTAVEGVGPKTVGA 108
Query: 311 LYEK-GHRTLDDLK---NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKA---GE 363
LYE G ++LDDL+ + G +I + I Q LL A GE
Sbjct: 109 LYEALGIQSLDDLEAAAEAGEIREVSGFGETTEQNILSGIAFAREAQERELLGNARPVGE 168
Query: 364 EVLPEVI-------ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY---------- 406
VL V GGS RR K + GD+DV+ D ++ L+++
Sbjct: 169 SVLEFVRSHDAVERADVGGSLRRWKPTIGDVDVLAASDDGEAVGRALTEWKRVGDTIDFG 228
Query: 407 -VKKLKEMKFLREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDD 465
K M +R DL +E Y L +TGN N LR A + ++++
Sbjct: 229 PTKTSVRMNGVRVDLRVVEDAE-------YGAALQYFTGNKGHNLTLRNRAIGRDLKVNE 281
Query: 466 TGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
G+F + + G R L +TE++V++ +G PW+ P R
Sbjct: 282 YGVFDVSGVADEDAGQRVGELLASETEEDVYEAVGLPWMPPELR 325
>gi|323349577|gb|EGA83798.1| Pol4p [Saccharomyces cerevisiae Lalvin QA23]
Length = 600
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 86/346 (24%), Positives = 139/346 (40%), Gaps = 63/346 (18%)
Query: 65 DLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQ 124
D++ L ++ + + K S I +W+++ +K +DL IK P I+D
Sbjct: 77 DVDEFLGKIEQSGIQCXKTSCIT-KWVQNDKFAFQK--DDL--IKFQPSIIVISD----- 126
Query: 125 IQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPM--SSESLTNT 182
+ DG+SS K+ + ST DVE+ ++ N M +S+ L
Sbjct: 127 ------NADDGQSSTDKESEIST------------DVESERNDDSNNKDMIQASKPLKRL 168
Query: 183 LSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPV 242
L +TD + N N+ I +L Y GE R+ SY A
Sbjct: 169 LQGDKGRASL----VTDKTKYKN----NELIIGALKRLTKKYEIEGEKFRARSYRLAKQS 220
Query: 243 IEKLPFKIESADQV-KGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVW 301
+E F + S ++ L IG S+ IQ I+ TG L L E + F +
Sbjct: 221 MENCDFNVRSGEEAHTKLRNIGPSIAKKIQVILDTGVLPGLNDSVGLED--KLKYFKNCY 278
Query: 302 GIGPATAQKLYEKGHRTLDDLKNEDSLTHSQR-------------LGLKYFDDIKTRIPR 348
GIG A++ +L N +S + + G Y+DD ++ R
Sbjct: 279 GIGSEIAKRW---------NLLNFESFCVAAKKDPEEFVSDWTILFGWSYYDDWLCKMSR 329
Query: 349 HEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
+E + +QKA + PE + GSY RG + CGD+D++ P
Sbjct: 330 NECFTHLKKVQKALRGIDPECQVELQGSYNRGYSKCGDIDLLFFKP 375
Score = 42.0 bits (97), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 12/74 (16%)
Query: 438 GLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFD 497
G I +TG+ NR +R+LA KG++L GLF R L+ E+ +F+
Sbjct: 514 GRIHYTGSKEYNRWIRILAAQKGFKLTQHGLF------------RNNILLESFNERRIFE 561
Query: 498 FLGFPWLEPHERNL 511
L + EP RN+
Sbjct: 562 LLNLKYAEPEHRNI 575
>gi|406909441|gb|EKD49692.1| hypothetical protein ACD_63C00070G0010 [uncultured bacterium]
Length = 580
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 86/331 (25%), Positives = 145/331 (43%), Gaps = 45/331 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYK-AIPVIEKLPFKIESADQVKG------LPGI 262
N + ++IF ++ I G + S Y+ A IE + +E + KG L GI
Sbjct: 3 NSDFSKIFSEISRILELRGTNNFKVSAYRNAGREIEHMAEDLEDIYKEKGVNGLVNLTGI 62
Query: 263 GKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISL-FGEVWGIGPATAQKLY-EKGHRTLD 320
G+S+ + I+E++ TGK E+ +K K+ + L V GIG TA+KLY E R+L
Sbjct: 63 GESIAEKIEELIKTGKCKYYENLKK--KIPKVELEMLNVPGIGAKTARKLYKELNLRSLS 120
Query: 321 DLKNEDSLTHSQRL-GLKYFDD---IKTRIPRHEVEQMERLLQKAGEEVLPEVI------ 370
DL+ + + L G + + +++ E +++ R L E + +V+
Sbjct: 121 DLEEKAKAGKVRELEGFRARTEENILQSLKSLRERKKITRYLLTFAEPIAQDVLKYLKKC 180
Query: 371 -----ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFST- 424
GS RR K + GD+D+++ + + KY K K + L+ D +
Sbjct: 181 KDVKKCDVVGSLRRMKETVGDIDLIVGSSNPEKVIEHFVKYPNKKKVI--LKGDTKGAIL 238
Query: 425 HSE------EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGK 478
H E EV P Y L +TG+ N LR A+ +GY + + G+
Sbjct: 239 HKEIVQIDLEVLPMKNYGSLLQHFTGSKEHNVHLRTWAKKEGYSISEYGVIKG------- 291
Query: 479 QGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ART F E++ + + G + P R
Sbjct: 292 ---KARTHKLFSDEQDFYKYFGMQNIPPELR 319
>gi|1526547|dbj|BAA13425.1| DNA polymerase family X [Thermus aquaticus]
Length = 320
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 131/293 (44%), Gaps = 50/293 (17%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESADQVKG------LPGI 262
N+ + +F ++ + LG++ R +YY+A + L IE + KG LPGI
Sbjct: 3 NQELARVFEEIGLMSEFLGDNPFRVRAYYQAARTLYDLDTPIEEIAK-KGKEALLELPGI 61
Query: 263 GKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDD 321
G + D I E + TG++ K E + R + EV G+GP TA+ LYE G +L+
Sbjct: 62 GPDLADKILEFLATGRVKKDEEL-SGKVPRGVLEVMEVPGVGPKTARGLYEALGIDSLEK 120
Query: 322 LKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGE------------------ 363
LK ++L L LK F K +++ L Q AG+
Sbjct: 121 LK--EALERGDLLRLKGFGAKKA----ERIKEGLLLAQAAGKRRPLGAVLFLARNLLEQN 174
Query: 364 EVLPEV--IILCGGSYRRGKASCGDLDVVI--MHPDRKSHKGFLS------KYVK-KLKE 412
LP V LC GS RR K + GDLD ++ + P+ K GF++ Y K + +
Sbjct: 175 RALPGVKKAELC-GSARRYKDTVGDLDYLVASLEPE-KVVAGFVALPGVKEVYAKGRERA 232
Query: 413 MKFLREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDD 465
FL+ L V P + Y GL TG+ + RLR LA+ G +L +
Sbjct: 233 TVFLKNGLQVDLR---VVPEESYGAGLQYLTGSKEHSIRLRALAQGMGLKLSE 282
>gi|323356006|gb|EGA87813.1| Pol4p [Saccharomyces cerevisiae VL3]
Length = 547
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 143/347 (41%), Gaps = 65/347 (18%)
Query: 65 DLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQ 124
D++ L ++ + + K S I +W+++ +K +DL IK P I+D
Sbjct: 77 DVDEFLGKIEQSGIQCAKTSCIT-KWVQNDKFAFQK--DDL--IKFQPSIIVISD----- 126
Query: 125 IQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPM--SSESLTNT 182
+ DG+SS K+ + ST DVE+ ++ N M +S+ L
Sbjct: 127 ------NADDGQSSTDKESEIST------------DVESERNDDSNNKDMIQASKPLKRL 168
Query: 183 LSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPV 242
L +TD + N N+ I +L Y GE R+ SY A
Sbjct: 169 LQGDKGRASL----VTDKTKYKN----NELIIGALKRLTKKYEIEGEKFRARSYRLAKQS 220
Query: 243 IEKLPFKIESADQV-KGLPGIGKSMQDHIQEIVTTGKLSKL-EHFEKDEKVRTISLFGEV 300
+E F + S ++ L IG S+ IQ I+ TG L L + ++K++ F
Sbjct: 221 MENCDFNVRSGEEAHTKLRNIGPSIAKKIQVILDTGVLPGLNDSVGLEDKLK---YFKNC 277
Query: 301 WGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQR-------------LGLKYFDDIKTRIP 347
+GIG A++ +L N +S + + G Y+DD ++
Sbjct: 278 YGIGSEIAKRW---------NLLNFESFCVAAKKDPEEFVSDWTILFGWSYYDDWLCKMS 328
Query: 348 RHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
R+E + +QKA + PE + GSY RG + CGD+D++ P
Sbjct: 329 RNECFTHLKKVQKALRGIDPECQVELQGSYNRGYSKCGDIDLLFFKP 375
>gi|151943833|gb|EDN62133.1| DNA polymerase IV [Saccharomyces cerevisiae YJM789]
gi|190406448|gb|EDV09715.1| DNA polymerase IV [Saccharomyces cerevisiae RM11-1a]
gi|207347327|gb|EDZ73534.1| YCR014Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|365766764|gb|EHN08257.1| Pol4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 582
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 86/346 (24%), Positives = 139/346 (40%), Gaps = 63/346 (18%)
Query: 65 DLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQ 124
D++ L ++ + + K S I +W+++ +K +DL IK P I+D
Sbjct: 77 DVDEFLGKIEQSGIQCAKTSCIT-KWVQNDKFAFQK--DDL--IKFQPSIIVISD----- 126
Query: 125 IQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPM--SSESLTNT 182
+ DG+SS K+ + ST DVE+ ++ N M +S+ L
Sbjct: 127 ------NADDGQSSTDKESEIST------------DVESERNDDSNNKDMIQASKPLKRL 168
Query: 183 LSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPV 242
L +TD + N N+ I +L Y GE R+ SY A
Sbjct: 169 LQGDKGRASL----VTDKTKYKN----NELIIGALKRLTKKYEIEGEKFRARSYRLAKQS 220
Query: 243 IEKLPFKIESADQV-KGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVW 301
+E F + S ++ L IG S+ IQ I+ TG L L E + F +
Sbjct: 221 MENCDFNVRSGEEAHTKLRNIGPSIAKKIQVILDTGVLPGLNDSVGLED--KLKYFKNCY 278
Query: 302 GIGPATAQKLYEKGHRTLDDLKNEDSLTHSQR-------------LGLKYFDDIKTRIPR 348
GIG A++ +L N +S + + G Y+DD ++ R
Sbjct: 279 GIGSEIAKRW---------NLLNFESFCVAAKKDPEEFVSDWTILFGWSYYDDWLCKMSR 329
Query: 349 HEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
+E + +QKA + PE + GSY RG + CGD+D++ P
Sbjct: 330 NECFTHLKKVQKALRGIDPECQVELQGSYNRGYSKCGDIDLLFFKP 375
Score = 41.6 bits (96), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 12/74 (16%)
Query: 438 GLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFD 497
G I +TG+ NR +R+LA KG++L GLF R L+ E+ +F+
Sbjct: 514 GRIHYTGSKEYNRWIRILAAQKGFKLTQHGLF------------RNNILLESFNERRIFE 561
Query: 498 FLGFPWLEPHERNL 511
L + EP RN+
Sbjct: 562 LLNLKYAEPEHRNI 575
>gi|325111069|ref|YP_004272137.1| PHP domain-containing protein [Planctomyces brasiliensis DSM 5305]
gi|324971337|gb|ADY62115.1| PHP domain protein [Planctomyces brasiliensis DSM 5305]
Length = 584
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 82/341 (24%), Positives = 149/341 (43%), Gaps = 56/341 (16%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIES--ADQ---VKGLPGIG 263
N I ++F +L ++ G + R +Y A I+ LP +E AD+ + L GIG
Sbjct: 3 NATIADMFDQLADLLELDGANGFRVRAYRNAARTIDALPDSLEEMIADESQKLTDLSGIG 62
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLDDL 322
K + + I+ IV TG+L +LE ++ + + + G+GP L+ + H ++LD+L
Sbjct: 63 KDLAEKIRNIVETGELKQLEEYKAKIPADVMKML-RIPGLGPKKVAILFYELHLKSLDEL 121
Query: 323 KN--EDSLTHSQR-----------LGLKYFDDIKTRI----PRHEVEQMERLLQKAGEEV 365
K+ E+ + ++ GL++ + +R+ + VEQ+ L+ G
Sbjct: 122 KHAAENGVIAQKKGFGKKTEQLILEGLEHLEQSGSRMYLADAKPFVEQILSGLRGLGSVH 181
Query: 366 LPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFL------SKYVKKLKEMKFLRED 419
EV GS RR K + GDLD++ D FL K + + + + +R
Sbjct: 182 QAEV----AGSVRRLKETIGDLDILATADDPAEAMDFLENHPQTDKVLARGETKQRVRFK 237
Query: 420 LIFSTHSEE-----------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGL 468
+ + + V P + + +TG+ N R LA+ + +L++ GL
Sbjct: 238 PLVRCMTPDGNRMRLEMDLRVVPAASFGAAMQYFTGSKEHNIVTRRLAQQRDLKLNEYGL 297
Query: 469 FPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
F G ++ V + TE+ ++ L PW+ P R
Sbjct: 298 FR----EGDEEAVAGK------TEEAIYKTLDLPWIPPELR 328
>gi|449548816|gb|EMD39782.1| DNA polymerase IV [Ceriporiopsis subvermispora B]
Length = 406
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 87/180 (48%), Gaps = 17/180 (9%)
Query: 229 EDRRSF---SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHI--------QEIVTTG 277
ED+ + ++ AI VI + +IES ++V+ + GIGK + I QE
Sbjct: 32 EDKNPYKIKAFTSAIAVINRFDHRIESVEEVRDVKGIGKGIAKRIALFLSGEQQEEAENH 91
Query: 278 KLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE---DSLTHSQRL 334
++E E++++ + + + G+G A KL G +L+ L+ + L S ++
Sbjct: 92 VSVQVEDTEENKQRKAMQELTTIHGVGRVLAGKLVALGCMSLEHLRQPEFYNQLAPSMKV 151
Query: 335 GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
GL + D + R+ R + E + ++ + + + I GSYRR + D+DV+I HP
Sbjct: 152 GLDFVDHLDHRVTRPQAEAVIDFMK---DNMSSKFEISLVGSYRRESPTSSDVDVLIFHP 208
>gi|334341003|ref|YP_004545983.1| PHP domain-containing protein [Desulfotomaculum ruminis DSM 2154]
gi|334092357|gb|AEG60697.1| PHP domain protein [Desulfotomaculum ruminis DSM 2154]
Length = 569
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 132/278 (47%), Gaps = 41/278 (14%)
Query: 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EK 314
V +PGIGK+++ I+EI+ TGKLSK + ++ + + ++ GIGP A+ L+ E
Sbjct: 53 VGKIPGIGKAIEAKIKEIIETGKLSKHQELLREIPPGVLEI-KKLPGIGPNRARILHREL 111
Query: 315 GHRTLDDL-----------------KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERL 357
G LD+L K E + + + D + + R E++
Sbjct: 112 GVTGLDELAQAAKERRVRVLKGFSAKMEWEILNGIGMMRNRHDRVLLSVARELAEELTEF 171
Query: 358 LQKAGEEVLPEV-IILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY--VKKL--KE 412
++ +LP V + GS RR K + GDLD+VI + ++ L+ + VK++ ++
Sbjct: 172 IK-----ILPGVRQVAVAGSTRRWKETVGDLDLVIAAEEAEALLNALATHPRVKEIIDRQ 226
Query: 413 MKFLREDLIFSTHSE-EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPA 471
K LR + + +V P + + L TG+ +RL+ +AE +G +L+ G+
Sbjct: 227 EKRLRVYTWWGLAVDFQVVPPGEFLYCLHRSTGSKGHYQRLQEIAEEQGLQLNHHGM--- 283
Query: 472 TYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
GKQG + +TE+E++ LG ++ P R
Sbjct: 284 -----GKQG---EAPILLNTEEEIYSSLGMNYVAPELR 313
>gi|291279404|ref|YP_003496239.1| DNA polymerase family X [Deferribacter desulfuricans SSM1]
gi|290754106|dbj|BAI80483.1| DNA polymerase, family X [Deferribacter desulfuricans SSM1]
Length = 568
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 77/327 (23%), Positives = 143/327 (43%), Gaps = 43/327 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDR--RSFSYYKAIPVIEKLPFKI----ESADQVKGLPGIG 263
N++I IF + + Y L D + +Y KA +I L F I ++ ++ + G+G
Sbjct: 3 NEHIASIFDEYAD-YLELNNDDPFKVVAYRKAARIIRGLDFDIVEYIQNGGNLEKIKGVG 61
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL------------ 311
K++ I EIV TG L LE K+E + + ++ G+GP A +L
Sbjct: 62 KAIAKKIIEIVNTGSLDSLEKL-KEETPKILIEMTKIPGLGPKKAYRLHRELNINSIGEL 120
Query: 312 -YEKGHRTLDDLKNEDSLTHSQRL-GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEV 369
Y + LK T L GL+Y+ K + EVE + ++ ++
Sbjct: 121 EYACKENRIKLLKGFGGKTQDMILKGLEYYKKHKGKKLFFEVELIANDFKQTVSKIDGVC 180
Query: 370 IILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEM-----KFLREDLIFST 424
+ GS RR K D+D++++ + + + + + E+ KF+R +F
Sbjct: 181 DVEFAGSLRRKKEIVKDIDLILLIDNVTTLENIRKYFAESGIEVIEFGDKFIR--CLFRN 238
Query: 425 HSEEVYPRDIYAF--GLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVR 482
+ ++ + F L +TG+ N LR+ A+ KG+++++ G+F R
Sbjct: 239 INVDLRIANAENFVTMLHHFTGSKEHNEVLRMKAKEKGFKINEYGIF------------R 286
Query: 483 ARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ +EKE+++ L P++ P R
Sbjct: 287 GAEKINIKSEKEIYELLDLPYIIPELR 313
>gi|307107168|gb|EFN55412.1| hypothetical protein CHLNCDRAFT_52641 [Chlorella variabilis]
Length = 691
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 32/175 (18%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
++ +T+ GK + + +S +Y A V+ +++ Q LP + S +
Sbjct: 150 SQFLTDALGKQVV-------NHKSLAYAHAAAVVRTCAYRLSPPLQPGRLPYLADSTAEE 202
Query: 270 IQEIVTTGKLSKLEHFEKDEKVR--------------TISLFGEVWGIGPATAQKLYEKG 315
+ EI+ TG KLE F +DE VR T F + G+G +TA+K + +G
Sbjct: 203 VSEILLTGTCDKLERFRRDEAVRDSKGVLRLDSAGAATRRRFARLVGVGASTARKWWGRG 262
Query: 316 HRTLDDLKNED-----------SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQ 359
T +D++ +LT +QR GL+Y D+ I ++ +M + ++
Sbjct: 263 LSTCEDVEAAAAGQAASWQPPLALTAAQRFGLRYRRDLLEGISAQDLAEMRQAVE 317
>gi|357397843|ref|YP_004909768.1| PHP C-terminal domain-containing protein, partial [Streptomyces
cattleya NRRL 8057 = DSM 46488]
gi|386353882|ref|YP_006052128.1| PHP C-terminal domain-containing protein, partial [Streptomyces
cattleya NRRL 8057 = DSM 46488]
gi|337764252|emb|CCB72961.1| PHP C-terminal domain-containing protein [Streptomyces cattleya
NRRL 8057 = DSM 46488]
gi|365804390|gb|AEW92606.1| PHP C-terminal domain-containing protein [Streptomyces cattleya
NRRL 8057 = DSM 46488]
Length = 573
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 81/339 (23%), Positives = 135/339 (39%), Gaps = 67/339 (19%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESAD--QVKGLPGIGKSM 266
N+ I + + ++ G D ++ +Y KA + + D Q++ +PG+G S+
Sbjct: 5 NEEIAGLIQEYADLLSVTGGDAFKARAYEKAARALGGHHADVSRLDVRQLREIPGVGASI 64
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGI---GPATAQKLYEK-GHRTLDDL 322
+ + E TG + L+ + + R S E+ I GP A L+E G ++D L
Sbjct: 65 AEKVAEYFRTGHIPALD----ERRTRIPSGVRELIRIPTLGPKKAMALHEDLGIASVDQL 120
Query: 323 -----------------KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEV 365
K E++L H G+ RIP + Q + A V
Sbjct: 121 SAALDAGRLHGLKGFGPKTEENLRH----GITLLRQAGGRIPLDQALQTAEDVVAALSAV 176
Query: 366 LPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVK---------------KL 410
V GS RR + + GD+DV++ D F++ + + L
Sbjct: 177 PGCVRCAYAGSLRRMRETIGDVDVLVAAEDSAP---FMTAFTELPCAAEVIAHGGTKSSL 233
Query: 411 KEMKFLREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFP 470
+ + ++ DL V P + GL +TG+ N LR +A G +L + GLF
Sbjct: 234 RTAEGVQVDL-------RVLPPAAWGAGLQYFTGSKAHNIGLRTIAVRHGLKLSEYGLFD 286
Query: 471 ATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
A G + +TE+EV+ LG PW+ P R
Sbjct: 287 ADSGE----------LVVSETEEEVYARLGLPWIPPPMR 315
>gi|443629593|ref|ZP_21113915.1| putative PHP domain protein [Streptomyces viridochromogenes Tue57]
gi|443336889|gb|ELS51209.1| putative PHP domain protein [Streptomyces viridochromogenes Tue57]
Length = 593
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 87/349 (24%), Positives = 149/349 (42%), Gaps = 76/349 (21%)
Query: 203 LYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGL--- 259
+ P D + + + LI+I G+ ++ Y KA I + + D VKGL
Sbjct: 1 MARPNDEVAALLQEYADLISITG--GDAFKARVYEKAARAIGGHHADVSTLD-VKGLKEI 57
Query: 260 PGIGKSMQDHIQEIVTTGKLSKLEHFEKD--EKVRTISLFGEVWGIGPATAQKLYEK-GH 316
P +GKS+ + + E ++G++S +E VR ++ + +GP A LYE+ G
Sbjct: 58 PNVGKSIAEKVVEYFSSGRVSAVEELRAKIPAGVRQLT---AIPTLGPKKALVLYEELGI 114
Query: 317 RTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQME--RLLQKAGEEVLPEV----- 369
T ++L + H +RL D+K P+ E + LLQ +G+ VL +V
Sbjct: 115 STTEELADA---IHEERL-----RDLKGFGPKTEENILHGISLLQSSGDRVLIDVAMGLA 166
Query: 370 ---------IILC-----GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKF 415
+ C GS RR + + GD+D+++ RK+ ++ E+ +
Sbjct: 167 EDIVAEMTRVTGCERCSYAGSLRRLRETIGDIDILVAA--RKA-----EPLMRAFTELPY 219
Query: 416 LREDLIFSTHSEE---------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKG 460
+ E + H E+ V P D + + +TG+ N R R LA +
Sbjct: 220 VSEVI---AHGEKKTSVRTSKGLQVDLRVVPPDSWGAAMQYFTGSKAHNIRTRELAVRQK 276
Query: 461 YRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+L + GLF A G + +TE++V+ LG PW+ P R
Sbjct: 277 LKLSEYGLFDAESGK----------KIVSETEEDVYARLGLPWIPPTLR 315
>gi|149919633|ref|ZP_01908112.1| PHP-like protein [Plesiocystis pacifica SIR-1]
gi|149819576|gb|EDM79004.1| PHP-like protein [Plesiocystis pacifica SIR-1]
Length = 743
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 83/337 (24%), Positives = 145/337 (43%), Gaps = 52/337 (15%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESADQVKGLP---GI 262
P N I +F ++ ++ + G DR R ++ ++ +IE LP + LP G+
Sbjct: 2 PLENTEIAAMFVEMADLLQIKGGDRHRVGAFRRSARIIEGLPRPAAQMLERGELPKIRGV 61
Query: 263 GKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDD 321
GK I++++ L+ + + L ++ GIGP + ++ + G TLD
Sbjct: 62 GKGTIHRIKQMLRRHSCDDLDELRRSVPLGLRELL-KIKGIGPTMVRNIHNRLGVTTLDQ 120
Query: 322 LKNED-----------SLTHSQRL--GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE 368
L++ L+H+Q++ G++ + + + + E++ R + A E LP
Sbjct: 121 LEHAAKAGAIETIPRMGLSHAQKILAGIEAYRKRRGKTALIDAERVGRRIVAALRE-LPA 179
Query: 369 V-IILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 427
V I GS RR KA+ GDLDV++ D L+++ + L E++ + LI +E
Sbjct: 180 VEGIALAGSVRRRKATIGDLDVLVATRDPAP---VLARF-QTLPEVESV---LIGGRGTE 232
Query: 428 ---------------EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPAT 472
+ P + GL +TG+ N LR A + G ++ D G+F
Sbjct: 233 GRCSVRLRNQQQADLRLLPPASFGAGLHYFTGSKQHNIELRKRANAMGLKVSDKGVF-HR 291
Query: 473 YGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
G G E+ VF LG PW+ P R
Sbjct: 292 EGEALIDGC--------ADEEAVFRHLGLPWIAPELR 320
>gi|323338571|gb|EGA79790.1| Pol4p [Saccharomyces cerevisiae Vin13]
Length = 509
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 143/347 (41%), Gaps = 65/347 (18%)
Query: 65 DLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQ 124
D++ L ++ + + K S I +W+++ +K +DL IK P I+D
Sbjct: 77 DVDEFLGKIEQSGIQCAKTSCIT-KWVQNDKFAFQK--DDL--IKFQPSIIVISD----- 126
Query: 125 IQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPM--SSESLTNT 182
+ DG+SS K+ + ST DVE+ ++ N M +S+ L
Sbjct: 127 ------NADDGQSSTDKESEIST------------DVESERNDDSNNKDMIQASKPLKRL 168
Query: 183 LSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPV 242
L +TD + N N+ I +L Y GE R+ SY A
Sbjct: 169 LQGDKGRASL----VTDKTKYKN----NELIIGALKRLTKKYEIEGEKFRARSYRLAKQS 220
Query: 243 IEKLPFKIESADQV-KGLPGIGKSMQDHIQEIVTTGKLSKL-EHFEKDEKVRTISLFGEV 300
+E F + S ++ L IG S+ IQ I+ TG L L + ++K++ F
Sbjct: 221 MENCDFNVRSGEEAHTKLRNIGPSIAXKIQVILDTGVLPGLNDSVGLEDKLK---YFKNC 277
Query: 301 WGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQR-------------LGLKYFDDIKTRIP 347
+GIG A++ +L N +S + + G Y+DD ++
Sbjct: 278 YGIGSEIAKRW---------NLLNFESFCVAAKKDPEEFVSDWTILFGWSYYDDWLCKMS 328
Query: 348 RHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
R+E + +QKA + PE + GSY RG + CGD+D++ P
Sbjct: 329 RNECFTHLKKVQKALRGIDPECQVELQGSYNRGYSKCGDIDLLFFKP 375
>gi|384485891|gb|EIE78071.1| hypothetical protein RO3G_02775 [Rhizopus delemar RA 99-880]
Length = 217
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 6/134 (4%)
Query: 207 PDLNKNITEIFGKLINIYRAL-GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKS 265
P+ NK + + L+ R L GE+ R+ SY I ++ P + S + + + G+G
Sbjct: 80 PNYNKRLICLLS-LVEQSRELEGENIRAASYAHVISALKTYPRPLGSIKEAEKIIGVGVR 138
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE 325
++ IQ+ + TG + + E E+ RT LF +GP TA+ ++ G+RTL ++ +
Sbjct: 139 IRQKIQQFLETGTIEEAEGLRHSEEFRTRRLF----RVGPVTAKIWWDVGYRTLQEVFDN 194
Query: 326 DSLTHSQRLGLKYF 339
LT + RLG++ F
Sbjct: 195 AQLTSTVRLGIQLF 208
>gi|386393892|ref|ZP_10078673.1| DNA polymerase IV (family X) [Desulfovibrio sp. U5L]
gi|385734770|gb|EIG54968.1| DNA polymerase IV (family X) [Desulfovibrio sp. U5L]
Length = 574
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 85/334 (25%), Positives = 143/334 (42%), Gaps = 55/334 (16%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESADQVKG------LPGI 262
N +I IF ++ ++ G + R +Y A + L + AD V +PG+
Sbjct: 5 NSDIARIFDEVADLLEIEGANPFRVRAYRNAAQTVASLGEAV--ADMVAAGRDLTEIPGV 62
Query: 263 GKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDD 321
G+ + ++ IV TGKL L RT+ V G+GP L++ G L+
Sbjct: 63 GQDLAGKMEVIVGTGKLPLLAEL-AGRTPRTLEGLLAVPGLGPKRVAALHKALGITDLEG 121
Query: 322 LKNEDSLTHSQRL---GLKYFDDIKTRIPRHE---------VEQME--------RLLQKA 361
L+ + Q L G K +I T + R + Q E L + A
Sbjct: 122 LRQAAAAGRLQALPGFGAKAEANILTALDRKSKSGDTGRFTLAQAEPQAEALRAHLARSA 181
Query: 362 GEEVLPEVIILCGGSYRRGKASCGDLDVVIM-HPDRKSHKGFLSKY--VKKLKEMKFLRE 418
G E ++ GSYRR + + GDLD+++ D K F +++ V+++ R
Sbjct: 182 GVER-----VVVAGSYRRRRETVGDLDLLVTGAADSPVLKDF-TRFPDVRQVTAKGPTRA 235
Query: 419 DLIFSTHSE---EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS 475
+I T + + PR+ Y L +TG+ N +R L KG ++++ G+F
Sbjct: 236 AVILRTGLQVDARLVPRESYGAALHYFTGSKAHNLAVRNLGIDKGLKVNEYGVF-----R 290
Query: 476 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
GG + V R TE+E++ +G ++EP R
Sbjct: 291 GGDR-VAGR------TEEEIYALMGLGYVEPELR 317
>gi|402878108|ref|XP_003902745.1| PREDICTED: DNA polymerase beta-like [Papio anubis]
Length = 164
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 80/157 (50%), Gaps = 32/157 (20%)
Query: 380 GKASCGDLDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL------------IFS 423
G S GD+DV++ HP S L + V++L++++F+ + L + S
Sbjct: 13 GAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVRFITDTLSKGETKFMGVCQLPS 72
Query: 424 THSEEVYP----------RDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATY 473
+ E+ YP +D Y G++ +TG+D+ N+ +R A KG+ +++ + P
Sbjct: 73 KNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-- 130
Query: 474 GSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
G GV A L D+EK++FD++ + + EP +R+
Sbjct: 131 ---GVTGV-AGEPLPVDSEKDIFDYIQWKYREPKDRS 163
>gi|406984248|gb|EKE05334.1| hypothetical protein ACD_19C00355G0014 [uncultured bacterium]
Length = 555
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 118/265 (44%), Gaps = 43/265 (16%)
Query: 259 LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GH 316
+P IGKS+ +H+ EI TGK + E KD L + +G TA K+ + +
Sbjct: 58 IPSIGKSIAEHLNEIFRTGKSTHFEELMKDIPQEAFVLMA-LPKVGLKTAMKMMSELPKN 116
Query: 317 RTLDDLKNEDSL-THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGG 375
++ ++ L T +RL L Y +++ + + VE ++ ++ +VL G
Sbjct: 117 ELIEKIREAQKLMTKDKRLLLPYAENVASEV----VEWIKNGVEVEKIDVL--------G 164
Query: 376 SYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEVYPRDI- 434
S RR A+ GD+D+ + + + ++V K+ K + + + S+ + P D+
Sbjct: 165 SLRRKSATVGDIDIAVATNNPTE---VIERFVNYSKKQKIIEKGEVTSSI---LLPGDVQ 218
Query: 435 ----------YAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRAR 484
Y L +TG+ N LR + KGY + + G+ +G G+R
Sbjct: 219 VDLLVMIPDAYGNALQHFTGSKNHNIALREYSLKKGYSMSEHGI--KNTKTGKTVGIR-- 274
Query: 485 TSLKFDTEKEVFDFLGFPWLEPHER 509
TEKE++ LG ++EP R
Sbjct: 275 ------TEKELYKLLGLNYIEPELR 293
>gi|220931411|ref|YP_002508319.1| DNA polymerase X family protein [Halothermothrix orenii H 168]
gi|219992721|gb|ACL69324.1| DNA polymerase X family protein [Halothermothrix orenii H 168]
Length = 573
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 72/326 (22%), Positives = 154/326 (47%), Gaps = 42/326 (12%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIES---ADQVKGLPGIGKS 265
NK ++ I +L + GE++ + +YY A + + I+ +++ +PG+G+
Sbjct: 6 NKEVSRILKELAKLMELKGENKFKVRAYYNASRQLINMSDNIQDLAREGKIRNIPGVGEG 65
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKN 324
+ I+EI+ G +LE + + + + ++ G+GP A +L+ E G L++LK+
Sbjct: 66 IARSIKEIMEKGYSPELEELKAELPGGLLEII-KIPGLGPKRAYQLFNELGVTNLEELKS 124
Query: 325 EDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKAGE--EVLPEVIILC------ 373
+ +++L G+K +++K +I ++E + LL++A + L I C
Sbjct: 125 ALNTGKARKLKGFGVKTEENLKNKIEKYESFKNTYLLKEALGILDELKRYIKKCPGVSRV 184
Query: 374 --GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSK--YVKKLKEMKFLREDLIFSTHSEEV 429
G RR K L++++ +++S +L K + K ++E + E+ T +++
Sbjct: 185 KMTGEARRKKELVNSLEILVASKEKESVLEYLRKLSFAKSIEEKE---ENGYLLTFEDDI 241
Query: 430 ------YPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRA 483
P D++ F L TG+ +++ +A+ GY+L GL+ +
Sbjct: 242 RIKVFIVPPDMFCFYLFYLTGSKDHVQKMETIADDAGYQLTIKGLYKDS----------- 290
Query: 484 RTSLKFDTEKEVFDFLGFPWLEPHER 509
+ +K E+E++ LG ++ P R
Sbjct: 291 -SKIKVKNEEEIYTTLGVSYIIPELR 315
>gi|448736635|ref|ZP_21718730.1| DNA polymerase (family X) [Halococcus thailandensis JCM 13552]
gi|445805938|gb|EMA56125.1| DNA polymerase (family X) [Halococcus thailandensis JCM 13552]
Length = 575
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 81/324 (25%), Positives = 143/324 (44%), Gaps = 27/324 (8%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESA---DQVKGLPGIGKSM 266
N+ I + F ++ + + + +Y A IE L IE ++++ + GIG+S+
Sbjct: 3 NQEIAKTFYEIADFLEIKEVEYKPRAYRTAAENIESLSTDIEDIHDRNELEEIEGIGESI 62
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKN- 324
+ + E + TG L+ E + D + I V G+GP TA+KLY E TL+DL++
Sbjct: 63 AEKVAEYLDTGYLAYYEDLKADLPI-DIEAITSVKGVGPKTAKKLYLELDVLTLEDLEHA 121
Query: 325 --EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKA------------GEEVLPEVI 370
++ + G +I RI + Q LL +A + V
Sbjct: 122 AENGAIAELEGFGKASQQNILDRIEWAKRSQERMLLGRAFPIARSIETRLQNSDAFDRVD 181
Query: 371 ILCGGSYRRGKASCGDLDVVIMH--PDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE- 427
I+ GS+RR + + GDLD++ P+ + VK++ + +I S +
Sbjct: 182 IV--GSFRRRRPTVGDLDILATASAPEVAMEEFCTHDNVKEVLARGNTKSSVIVSGGLQI 239
Query: 428 --EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRART 485
+ Y LI +TG+ N LR A G++L++ GLF + + G R
Sbjct: 240 DLRIVDDSEYGAALIYFTGSKDHNITLRNRAIDHGWKLNEYGLFDVSDVDDVRGGQRVGK 299
Query: 486 SLKFDTEKEVFDFLGFPWLEPHER 509
+ +TE +++D L W++P R
Sbjct: 300 RIASETEPDIYDTLNTTWIQPELR 323
>gi|448340713|ref|ZP_21529683.1| PHP domain protein [Natrinema gari JCM 14663]
gi|445629653|gb|ELY82929.1| PHP domain protein [Natrinema gari JCM 14663]
Length = 583
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 79/327 (24%), Positives = 137/327 (41%), Gaps = 29/327 (8%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQV--------KGLPG 261
N + F + ++ A G + + +Y +A I P I AD+V + + G
Sbjct: 4 NAELAARFEEFADLLEADGVEYKPRAYRRAAENIRAHPSPI--ADRVAEGDEAVLENIDG 61
Query: 262 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLD 320
+G ++ I E V TG++ +LE + + I+ + G+GP TA KLY E G TLD
Sbjct: 62 VGDAISSKIVEYVETGEIDELEALRAELPI-DIAAITRIEGVGPKTAGKLYRELGIETLD 120
Query: 321 DLKNEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVLP-----EV 369
DL+ Q + G K +I + +LL +A ++VL
Sbjct: 121 DLETVAEAGEVQEIKGFGPKTEQNILENLEFARTVGQRQLLGEARPLADDVLAFLESVPA 180
Query: 370 IILC--GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 427
+ C GS RR + + GD+DV+ D ++ + E++ E
Sbjct: 181 VDRCEVAGSIRRWRETVGDVDVLAATADGEAVVERFVAWESVDDEIESGPEKASVRVGES 240
Query: 428 EVYPRDI----YAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRA 483
V R + + L +TG+ N LR A + +L++ G F + + + R
Sbjct: 241 RVDLRVVVPAEFGSALQYFTGSKDHNVSLRNYAIDRDMKLNEYGAFDVSDIADHEADQRI 300
Query: 484 RTSLKFDTEKEVFDFLGFPWLEPHERN 510
+ +TE+ +++ LG PW+ P R
Sbjct: 301 GDRVAGETEEGMYEALGLPWIPPELRT 327
>gi|448579986|ref|ZP_21644815.1| DNA polymerase IV [Haloferax larsenii JCM 13917]
gi|445722659|gb|ELZ74316.1| DNA polymerase IV [Haloferax larsenii JCM 13917]
Length = 582
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 78/334 (23%), Positives = 135/334 (40%), Gaps = 46/334 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIES-----ADQVKGLPGIGK 264
N I + + ++ A G + + SY +A + + P IE D V+ + +G
Sbjct: 4 NDEIATLLEEFADLLDAKGVEYKPSSYRRAAENVREHPNPIEDLADEGEDAVQTIDRVGD 63
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 323
++ I E TG + +L+ +DE ++ V G+GP T LYE G LD+L+
Sbjct: 64 AISSKIVEYFETGHIEELDAL-RDELPVDMAGLTSVEGVGPKTVGTLYEALGVTDLDELE 122
Query: 324 ---NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVLPEVI------- 370
+ + + G K +I I LL KA +++L +
Sbjct: 123 AAARDGEIQEVKGFGAKTEQNILDGIDFARESTGRELLGKARPVADDLLASLSENDAVER 182
Query: 371 ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYV--------------KKLKEMKFL 416
GS RR + + GD+D+++ D +S + +V K + +
Sbjct: 183 AEPAGSMRRWRETVGDIDILVASDDPQS---VIDSFVDFELAGDTIEAGEQKASIRVNAM 239
Query: 417 REDL-IFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS 475
R DL + H Y L +TG+ N LR +A +G ++++ G+F T S
Sbjct: 240 RVDLRVVDPHE--------YGAALQYFTGSKDHNVHLRNIAIDRGLKMNEYGMFDITAVS 291
Query: 476 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
G R + DTE+ ++ L P + P R
Sbjct: 292 DTDDGPRVGERVAGDTEESMYAALDLPLVPPEMR 325
>gi|433591283|ref|YP_007280779.1| DNA polymerase IV (family X) [Natrinema pellirubrum DSM 15624]
gi|448333040|ref|ZP_21522258.1| PHP domain protein [Natrinema pellirubrum DSM 15624]
gi|433306063|gb|AGB31875.1| DNA polymerase IV (family X) [Natrinema pellirubrum DSM 15624]
gi|445624394|gb|ELY77778.1| PHP domain protein [Natrinema pellirubrum DSM 15624]
Length = 583
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 138/334 (41%), Gaps = 45/334 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQV--------KGLPG 261
N I F + ++ A + + +Y +A + P I AD+V + + G
Sbjct: 4 NAEIAARFEEFADLLEADDVEYKPRAYRRAAENVRAHPSPI--ADRVADGDREVLENIDG 61
Query: 262 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLD 320
+G ++ I E V TG++ +L + + I+ + G+GP TA KLY E G TLD
Sbjct: 62 VGDAISSKIVEYVETGEIEELAELRAELPI-DIADITRIEGVGPKTAGKLYRELGVETLD 120
Query: 321 DLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQME-----------RLLQKA---GEEVL 366
DL++ Q D+K P+ E +E +LL +A ++VL
Sbjct: 121 DLEDAAEAGEIQ--------DVKGFGPKTEANILENLEFARTVGQRQLLGEARPLADDVL 172
Query: 367 P-----EVIILC--GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLRED 419
E + C GS RR + + GD+DV+ D ++ + E++ E
Sbjct: 173 AYLEGLEAVERCEVAGSIRRWRETIGDVDVLAATEDGEAVVEQFVSWESVDDEIESGPEK 232
Query: 420 LIFSTHSEEVYPRDI----YAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS 475
V R + + L +TG+ N LR A +G +L++ G F +
Sbjct: 233 ASVRVGESRVDLRVVVPAEFGSALQYFTGSKDHNVALRNYAIDRGMKLNEYGAFDVSDVE 292
Query: 476 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ G R + +TE +++ LG W+ P R
Sbjct: 293 DHEAGQRVGDRVAGETEAGMYEALGLAWIPPELR 326
>gi|300311698|ref|YP_003775790.1| DNA polymerase IV protein [Herbaspirillum seropedicae SmR1]
gi|300074483|gb|ADJ63882.1| DNA polymerase IV protein [Herbaspirillum seropedicae SmR1]
Length = 593
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 83/331 (25%), Positives = 141/331 (42%), Gaps = 46/331 (13%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIES---ADQVKGLPGI 262
P LN ++ +IF ++ ++ E+ R +Y A I F+ + Q LPGI
Sbjct: 2 PILNSDVAKIFEEIADLLEINDENPFRIRAYRSAARTIRNFKFQFHTLIGQGQFPKLPGI 61
Query: 263 GKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL-YEKGHRTLDD 321
G+ +++ ++EI+ TG+ LE ++ L + G+GP Q+L + G ++
Sbjct: 62 GQDLEEKVREIIATGRCLLLEALRRNFPPHFNDLLA-IPGLGPKRVQRLNHALGISSIKQ 120
Query: 322 LKNEDSLTHSQR----LGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILC---- 373
L+ E ++ R G K I + I V + Q V+P+ L
Sbjct: 121 LR-EAAIAGKVRDIPGFGPKTEQSILSAIAVQAVHSGGFIRQT----VMPQATALASYLS 175
Query: 374 ----------GGSYRRGKASCGDLDVVIMHPDR-KSHKGFLSKYVKKLKEMKF-LREDLI 421
GS RR K GD+D++ D + + FLS K+ M+ +R +I
Sbjct: 176 ESTHIDRIAIAGSCRRLKDVVGDIDLLATGSDSGELMERFLSYGDVKVVLMRGPIRGSVI 235
Query: 422 FSTHSE---EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGK 478
+ + P + Y L +TG+ N LR +A ++ +L++ GLF K
Sbjct: 236 LGSGIQVDLRFVPPESYGAALHYFTGSKPHNIALRQIALAQKMKLNEYGLF--------K 287
Query: 479 QGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
G R + DTE V+ LG P++ P R
Sbjct: 288 DGKR----IAGDTEISVYQALGLPFIPPELR 314
>gi|302539938|ref|ZP_07292280.1| cell division topological specificity factor MinE [Streptomyces
hygroscopicus ATCC 53653]
gi|302457556|gb|EFL20649.1| cell division topological specificity factor MinE [Streptomyces
himastatinicus ATCC 53653]
Length = 581
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 80/321 (24%), Positives = 132/321 (41%), Gaps = 68/321 (21%)
Query: 228 GEDRRSFSYYKAIPVIEKLPFKIESADQVKGL---PGIGKSMQDHIQEIVTTGKLSKLEH 284
G+ R+ +Y KA I P + D VKGL P +GKS+ + + E + TG + +E
Sbjct: 24 GDAFRARAYEKAARSIGGHPTDVSGLD-VKGLREIPNVGKSIAEKVVEYLRTGHVPAVEQ 82
Query: 285 FEKD--EKVRTISLFGEVWGIGPATAQKLYEK--------------GHRTLDDLK----- 323
VR ++ + +GP A LYE+ HR L DLK
Sbjct: 83 ARSKIPAGVRELT---AIPALGPKKAMLLYEELDIASVEQLATAIEEHR-LRDLKGFGPK 138
Query: 324 NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKAS 383
+E+++ H G+ R+P + + + A V + GS RR + +
Sbjct: 139 SEENILH----GIGLLRAAGGRVPLDDAMDVADDIVAALSRVPGCERVAYAGSLRRMRET 194
Query: 384 CGDLDVVIMHPDRKSHKGFLSKYVK---------------KLKEMKFLREDLIFSTHSEE 428
GD+D+++ + + F+ + ++ K L+ DL
Sbjct: 195 VGDVDILVAAAESAA---FMDAFTALPYTAEIIAHGEKKTSIRTTKGLQVDL-------R 244
Query: 429 VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLK 488
V P D + GL+ +TG+ N R+R +A G +L + GLF SG K R
Sbjct: 245 VLPLDSWGAGLLYFTGSKAHNIRVRAIAVRHGLKLSEYGLFETK--SGKKIASR------ 296
Query: 489 FDTEKEVFDFLGFPWLEPHER 509
+E++V+ LG W+ P R
Sbjct: 297 --SEEDVYARLGMDWIPPTMR 315
>gi|170701355|ref|ZP_02892317.1| PHP domain protein [Burkholderia ambifaria IOP40-10]
gi|170133740|gb|EDT02106.1| PHP domain protein [Burkholderia ambifaria IOP40-10]
Length = 592
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 78/334 (23%), Positives = 139/334 (41%), Gaps = 50/334 (14%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVI----EKLPFKIESADQVKGLPG 261
P N +F ++ ++ G + R +Y A I +P I + + +P
Sbjct: 2 PIHNAECAAVFAEIADMLEIQGANPFRVRAYRNAARTIADYGRDIPAMIANGSDLGQIPS 61
Query: 262 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLD 320
IG + ++EI TG +L+ + I +V G+G + L++ H +L+
Sbjct: 62 IGADLAAKLREIAATGT-CELQQTLRHALPGAIVELLDVPGLGAKRVKALHDALHVDSLE 120
Query: 321 DLKNEDSLTHSQRLG-------LKYFDDIKTRIPRH-------EVEQ-----MERLLQKA 361
L+ E H + L + D I R+ R + Q +ERL Q A
Sbjct: 121 QLRAEAKSGHVRALAGFGAKTEAQLLDAIDERLQREPQRFLLPDAAQSLRPMLERLRQVA 180
Query: 362 G-EEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKS-HKGFLS--KYVKKLKEMKFLR 417
G EV+P GS+RR + + GDLD+++ D + F+S + L K
Sbjct: 181 GVGEVVP------AGSFRRCRETVGDLDILVSARDPAAVADAFVSCGDVARVLAHGKTRS 234
Query: 418 EDLIFSTHSEEVYPRDIYAFG--LIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS 475
++ + ++ D AFG L+ +TG+ N LR +A++ G ++++ G+F
Sbjct: 235 SVMLGNGLQVDLRVVDADAFGAALVYFTGSKAHNIALRRIAQAGGLKINEYGVF------ 288
Query: 476 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
R + TE V++ +G W+ P R
Sbjct: 289 ------RGDERIAGATEASVYEAIGLHWVPPELR 316
>gi|448419747|ref|ZP_21580591.1| DNA polymerase iv (family x) [Halosarcina pallida JCM 14848]
gi|445674661|gb|ELZ27198.1| DNA polymerase iv (family x) [Halosarcina pallida JCM 14848]
Length = 582
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 80/317 (25%), Positives = 138/317 (43%), Gaps = 48/317 (15%)
Query: 222 NIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSK 281
N YR E+ R+ A PV E E + V + G+G+++ + E TG++++
Sbjct: 28 NTYRRAAENIRAH----ARPVEE---LAAEGQEAVGEIQGVGEAISSKVVEYFETGEIAE 80
Query: 282 LEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK---NEDSLTHSQRLGLK 337
LE + V +L V G+GP T LYE G TLD+L+ E + + G K
Sbjct: 81 LEELRAELPVDMAALTS-VEGVGPKTVASLYEALGITTLDELEAAAEEGRIREVKGFGPK 139
Query: 338 YFDDIKTRIP-RHEVEQMERL-------------LQKAGEEVLPEVIILCGGSYRRGKAS 383
++I+ +P ++ ERL L+ G +V GS RR + +
Sbjct: 140 TEENIRENVPFARRAQERERLGDARPLADDALAYLRADGAVERADV----AGSIRRWRDT 195
Query: 384 CGDLDVVIMHPDRKS-HKGFL----SKYVKKLKEMKF------LREDLIFSTHSEEVYPR 432
GD+DV++ + + F+ + V + E K +R DL V P
Sbjct: 196 IGDVDVLVASEEAAAVVDAFVDWPAANDVIEAGESKASVRSNGIRVDLRV------VVPE 249
Query: 433 DIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTE 492
+ + L +TGN NRR+R +A +G ++++ G+F + + G R + +TE
Sbjct: 250 E-FGAALQYFTGNREHNRRVRNVAIERGLKMNEYGVFDVSDVADPDAGQRVGERVAGETE 308
Query: 493 KEVFDFLGFPWLEPHER 509
++ + P + P R
Sbjct: 309 DSMYAAVDLPPIPPELR 325
>gi|257053513|ref|YP_003131346.1| PHP domain protein [Halorhabdus utahensis DSM 12940]
gi|256692276|gb|ACV12613.1| PHP domain protein [Halorhabdus utahensis DSM 12940]
Length = 580
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 131/300 (43%), Gaps = 28/300 (9%)
Query: 235 SYYKAIPVIEKLPFKI-----ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDE 289
+Y +A + + P + + + V+ + +G+++ D + E V TG + +LE +
Sbjct: 29 AYRRAAENVAEYPGDVVDLAEDGVEAVQEIDRVGEAIADKLVEYVETGAIEELEDLRAEL 88
Query: 290 KVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNEDSLTHSQRL---GLKYFDDIKTR 345
V +L V G+GP T LYE G +TLDDL+ Q + G K +I
Sbjct: 89 PVEMDALT-SVEGVGPKTVGTLYEALGIQTLDDLEAAAEAGEIQNVSGFGAKTEQNILDG 147
Query: 346 IPRHEVEQMERLLQKA---GEEV-----LPEVIILC--GGSYRRGKASCGDLDVVIMHPD 395
I +LL +A GE V E + C GGS RR K + GD+D ++ +
Sbjct: 148 IDFAREAHERQLLGEARPRGERVREYLRAVEAVQQCELGGSLRRWKPTIGDVDALVASTE 207
Query: 396 RKSHKGFLSKY-----VKKLKEMKF-LREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLN 449
+ + + V + E K LR D + V P + + L +TG+ N
Sbjct: 208 GPAVVEAFTDWDGADRVIEAGEGKASLRADGV-RIDLRVVDPAE-FGAALQYFTGSKDHN 265
Query: 450 RRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
LR A + +L++ G+F + G RA + ++E EV++ L PW+ P R
Sbjct: 266 VDLRNRAIDRDLKLNEYGVFDISAVEGEVDDQRAGERVAGESEAEVYEALDLPWIPPELR 325
>gi|448303190|ref|ZP_21493140.1| DNA-directed DNA polymerase [Natronorubrum sulfidifaciens JCM
14089]
gi|445594197|gb|ELY48364.1| DNA-directed DNA polymerase [Natronorubrum sulfidifaciens JCM
14089]
Length = 583
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 80/306 (26%), Positives = 129/306 (42%), Gaps = 37/306 (12%)
Query: 231 RRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEK 290
RR+ +A PV P + ++ + G+G ++ I E V TG + +LE +
Sbjct: 31 RRAAENIRAHPVPIADPVASGNEAVLEEIDGVGDAISAKIVEYVETGTIEELEELRAELP 90
Query: 291 VRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRH 349
+ I+ + G+GP TA KLY E G +LDDL+ Q + K F + R
Sbjct: 91 I-DIADITRIEGVGPKTAGKLYRELGVESLDDLEAAAEAGDVQEI--KGFGPKTEQNIRD 147
Query: 350 EVEQMERLLQK--------AGEEVLP-----EVIILC--GGSYRRGKASCGDLDV----- 389
+E ++ Q+ ++VL E + C GS RR + + GD+DV
Sbjct: 148 NLEFARQIGQRYLLGEGRPLADDVLAFLEGLEAVERCEVAGSIRRWRETIGDVDVLAATD 207
Query: 390 -----VIMHPDRKSHKGFLSKYVKKLK-EMKFLREDLIFSTHSEEVYPRDIYAFGLIAWT 443
V D +S G + +K + +R DL E + L +T
Sbjct: 208 AGEDVVEAFVDWESVDGEIESGPEKASVRIGEIRVDLRVVVPEE-------FGSALQYFT 260
Query: 444 GNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPW 503
G+ N RLR A +G +L++ G F + G+R + DTE +++ LG PW
Sbjct: 261 GSKDHNVRLRNYAIDRGMKLNEYGAFDVSEIDDPDAGLRVGDRVAGDTEAGMYEALGLPW 320
Query: 504 LEPHER 509
+ P R
Sbjct: 321 IPPELR 326
>gi|448348385|ref|ZP_21537234.1| PHP domain-containing protein [Natrialba taiwanensis DSM 12281]
gi|445642752|gb|ELY95814.1| PHP domain-containing protein [Natrialba taiwanensis DSM 12281]
Length = 593
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 130/296 (43%), Gaps = 53/296 (17%)
Query: 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY- 312
D ++ + G+G ++ I E V TG + +LE + + + I+ + G+GP TA KLY
Sbjct: 54 DAIEDIDGVGDAIATKIVEYVETGSIDELEELQAELPI-DIADITRIEGVGPKTAGKLYH 112
Query: 313 EKGHRTLDDLKNEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVL 366
E G TLDDL+ Q + G K +I+ I +LL +A ++VL
Sbjct: 113 ELGIETLDDLEAAAEANEIQEVSGFGPKTEQNIRDNIEFAREVGTRQLLGEARPLADDVL 172
Query: 367 P-----EVIILC--GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYV------------ 407
+ + C GS RR + + GD+DV++ D ++ + ++V
Sbjct: 173 GFLEGIQEVERCEVAGSIRRWRETIGDVDVLVGTNDNEA---VIEQFVGWDSVDSEIESG 229
Query: 408 --KKLKEMKFLREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDD 465
K + +R DL V D + L +TG+ N LR A +G ++++
Sbjct: 230 PAKASVLVGEIRVDL-------RVVVPDEFGAALQYFTGSKDHNVSLRNYAIDRGLKVNE 282
Query: 466 TGLF--------PATYGSG----GKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
G+F P GSG G Q + R L +TE+ +++ LG W+ P R
Sbjct: 283 YGVFDVSEIDAGPDGDGSGSATDGSQRIGDR--LAGETEEGMYEALGLDWMPPELR 336
>gi|389691724|ref|ZP_10180518.1| PHP family phosphohydrolase, histidinol phosphatase [Microvirga sp.
WSM3557]
gi|388588707|gb|EIM28997.1| PHP family phosphohydrolase, histidinol phosphatase [Microvirga sp.
WSM3557]
Length = 580
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/275 (24%), Positives = 117/275 (42%), Gaps = 49/275 (17%)
Query: 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 311
+A +++ +PG+G ++ + IQ + S+LE + + L + G+ P L
Sbjct: 69 AAGRLQEIPGVGAALSETIQRLHRDSTTSRLEALRTEVPAGVLELLA-IPGLRPQKVLDL 127
Query: 312 YEK-GHRTLDDLK---NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVL- 366
Y K G ++D+L+ +D L ++ G + + + T I +RL+ +AGE +
Sbjct: 128 YRKLGITSVDELEAACRQDRLKATKGFGPAFQNKVLTGIELMRRSHGQRLIHRAGEHLST 187
Query: 367 ---------PEVI-ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFL 416
PE+ I+ G +RRG DL +V P +H G
Sbjct: 188 LEANLRRSHPELTRIVPAGDFRRGSELVSDLALVAETP---AHLGV-------------- 230
Query: 417 REDLIFSTHSEEVY--PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYG 474
+++ + +V+ R Y L+ TG+ LR +AE G RLD+ GL+
Sbjct: 231 --EIVNVSEGAKVWLADRQHYGVALLLATGSSEHINELRSVAEGHGLRLDERGLY----- 283
Query: 475 SGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
R + + EK+V+ L P++EP R
Sbjct: 284 -------RGQHLVDCVDEKDVYAALDLPFIEPELR 311
>gi|435851850|ref|YP_007313436.1| DNA polymerase IV (family X) [Methanomethylovorans hollandica DSM
15978]
gi|433662480|gb|AGB49906.1| DNA polymerase IV (family X) [Methanomethylovorans hollandica DSM
15978]
Length = 574
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 77/305 (25%), Positives = 131/305 (42%), Gaps = 47/305 (15%)
Query: 235 SYYKAIPVIEKLPFKIE---SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKD--E 289
+Y KA IE+L + D + +PG+G++++ I+E++ TG E E
Sbjct: 29 AYQKAARHIEELEEDLNVLCKKDDLAHIPGVGEAIEAKIKEMLETGTFMAYEELRHTIPE 88
Query: 290 KVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDL---KNEDSLTHSQRLGLKYFDDIKTR 345
K+ I+ V GIGP TA LY K G + L L E + +G+K +++
Sbjct: 89 KIEEIT---AVQGIGPRTAYLLYTKLGVKDLKGLLRAAEEHRIRRIPGMGVKMEENVLIA 145
Query: 346 IPRH----------------EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDV 389
R E++ R L E++ EV I GS RR K + GD+D+
Sbjct: 146 AKRQFAEGNTGRFPLGLALPIAEEISRKLVDG--ELIREVQI--AGSIRRWKETVGDIDL 201
Query: 390 VIM--HPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE---EVYPRDIYAFGLIAWTG 444
+ P+R L V+++ E + +I+ H + + D + L +TG
Sbjct: 202 IACSNEPERAIEAFTLMDNVQEILEKGTTKGSVIYKEHIQVDMRIVKDDSFGSLLQHFTG 261
Query: 445 NDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWL 504
+ N +LR +A +KG L + GL + V + F E++ ++ LG ++
Sbjct: 262 SKDHNVKLRNIALAKGLHLSEYGL----------KNVETGEQMPFSAEEQQYEMLGLQFI 311
Query: 505 EPHER 509
P R
Sbjct: 312 PPELR 316
>gi|429198766|ref|ZP_19190565.1| PHP domain protein [Streptomyces ipomoeae 91-03]
gi|428665535|gb|EKX64759.1| PHP domain protein [Streptomyces ipomoeae 91-03]
Length = 587
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 86/342 (25%), Positives = 142/342 (41%), Gaps = 73/342 (21%)
Query: 210 NKNITEIFGKLINIYRALG-EDRRSFSYYKAIPVIEKLPFKIESADQVKGL---PGIGKS 265
N + +F + ++ G E ++ Y KA + + + D VKGL P +GKS
Sbjct: 5 NDEVAALFAEYADLISITGGEAYKARVYEKAARSVGGYHADVSTLD-VKGLQEIPNVGKS 63
Query: 266 MQDHIQEIVTTGKLSKLEHFEKD--EKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDL 322
+ + I E TG +S +E VR ++ + +GP A LYE+ G ++++L
Sbjct: 64 IAEKIVEYFRTGSVSAVEEVRAKIPAGVRRLT---AIPTLGPKKACVLYEELGIASVEEL 120
Query: 323 KNEDSLTHSQRL-GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEV------------ 369
+ H +RL LK F H +E LLQ +G+ VL +V
Sbjct: 121 ADA---IHEERLRDLKGFGPKTEENILHGIE----LLQSSGDRVLLDVAMDLAEDVVTEL 173
Query: 370 --IILC-----GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIF 422
+ C GS RR + + GD+DV++ + ++ E+ ++ E +
Sbjct: 174 SRVTGCRKCTYAGSLRRIRETIGDIDVLVAAEKP-------APLMRAFTELPYVSEVI-- 224
Query: 423 STHSEE---------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTG 467
H E+ V P D + L +TG+ N R R LA + +L + G
Sbjct: 225 -AHGEKKTSIRTTKGLAVDLRVVPPDSWGAALQYFTGSKAHNIRTRELALHQKLKLSEYG 283
Query: 468 LFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
LF A G + +TE++V+ LG PW+ P R
Sbjct: 284 LFDAESGK----------KIVSETEEDVYARLGLPWIPPALR 315
>gi|448313810|ref|ZP_21503522.1| DNA-directed DNA polymerase [Natronolimnobius innermongolicus JCM
12255]
gi|445597120|gb|ELY51198.1| DNA-directed DNA polymerase [Natronolimnobius innermongolicus JCM
12255]
Length = 583
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 79/309 (25%), Positives = 133/309 (43%), Gaps = 43/309 (13%)
Query: 231 RRSFSYYKAIPVIEKLPFKIESADQ--VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKD 288
RR+ +A PV + +IE D+ + + G+G ++ + E V TG + +LE +
Sbjct: 31 RRAAENIQAHPV--PIADRIEDGDEEILDEIDGVGDAISSKVVEYVETGSIEELEELRAE 88
Query: 289 EKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNEDSLTHSQRL---GLKYFDDIKT 344
+ I+ + G+GP TA KLY E G TLDDL+ + Q + G K ++I+
Sbjct: 89 LPI-DIADITRIEGVGPKTAGKLYRELGIETLDDLEAAAEASEIQAVKGFGPKTEENIRD 147
Query: 345 RIPRHEVEQMERLLQKA---GEEVLP-----EVIILC--GGSYRRGKASCGDLDVVIMHP 394
I +LL +A ++VL E + C GS RR +A+ GD+D ++
Sbjct: 148 GIEFAREVGQRQLLGEARPLADDVLAFLEGLEAVERCEVAGSIRRWRATIGDVDALVA-- 205
Query: 395 DRKSHKGFLSKYV--------------KKLKEMKFLREDLIFSTHSEEVYPRDIYAFGLI 440
+ + + +V K + +R DL E + L
Sbjct: 206 -TDAGEEVIESFVDWDSVDAEIESGPEKASIRVGEIRVDLRVVVPGE-------FGSALQ 257
Query: 441 AWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLG 500
+TG+ N LR A + +L++ G F + + G R + +TE ++D LG
Sbjct: 258 YFTGSKDHNVALRNYAIDREMKLNEYGAFDVSDLEDAETGQRVGDRVAGETEAGMYDALG 317
Query: 501 FPWLEPHER 509
PW+ P R
Sbjct: 318 LPWIPPELR 326
>gi|9964524|ref|NP_064992.1| putative DNA polymerase beta/AP endonuclease [Amsacta moorei
entomopoxvirus 'L']
gi|9944733|gb|AAG02916.1|AF250284_210 AMV210 [Amsacta moorei entomopoxvirus 'L']
Length = 612
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 81/335 (24%), Positives = 146/335 (43%), Gaps = 59/335 (17%)
Query: 213 ITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKI-------------ESADQV--- 256
I + K +IY L E + ++ A VI+ P I ES + +
Sbjct: 301 ILLVLNKFADIYNILNEIKYK-AFLNAAYVIQNTPVIIFKYKNVNNKFILNESKENIIQK 359
Query: 257 -KGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKG 315
K L IG S+ D I E+++T K+ KL + E + + I + + IGP AQ L +
Sbjct: 360 YKNLKSIGTSISDIIYELLSTNKVEKLINLENNSSYKYIKILTSILFIGPKKAQSLLKLN 419
Query: 316 HRTLDDL-------KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE 368
+ ++DL N LT + ++Y D++ + R+ + +++ + + E E
Sbjct: 420 IKNINDLIEKKDNIINMGILTIHEIKIIEYIKDMEP-VSRNFINDLKQNINLSSE---CE 475
Query: 369 VIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLRE-DLIFS---- 423
IL GSY RG D+D++I+ D K FL + K K M +R+ + IFS
Sbjct: 476 WYIL--GSYARGLDYSKDIDILII--DFTIDK-FLEELKKIAKLMYIIRKGNNIFSGVFL 530
Query: 424 -------THSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSG 476
+V ++ Y ++ +TG+ N +R +A+S+ L+ L
Sbjct: 531 WQGKKFILEINKVNNKEKYT-AIMHFTGSKKFNIFMRNIAKSENMILNQYSL-------- 581
Query: 477 GKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 511
+ L E+++FD+L ++ ++RN+
Sbjct: 582 ----KKDNVELPITKEEDIFDYLKIKYIPNNKRNI 612
>gi|339484269|ref|YP_004696055.1| PHP domain-containing protein [Nitrosomonas sp. Is79A3]
gi|338806414|gb|AEJ02656.1| PHP domain protein [Nitrosomonas sp. Is79A3]
Length = 577
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/334 (21%), Positives = 139/334 (41%), Gaps = 49/334 (14%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVI----EKLPFKIESADQVKGLPG 261
P N +I +F ++ ++ G + R +Y A V+ +++ +E + + LPG
Sbjct: 2 PKHNADIAAVFEEIADLLEIQGANPFRIRAYRNAARVVGEFSQEVSRLLEKGEDLTELPG 61
Query: 262 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLD 320
IG + I+EIV +G S L+ E I+ ++ G+GP + LY + +TL+
Sbjct: 62 IGDDLAGKIKEIVGSGHCSLLDRLHT-ELPSAITELLKIPGLGPKRVKALYHDLDVQTLE 120
Query: 321 DL-----------------KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGE 363
L K E+++ + + K I E +E+ L
Sbjct: 121 QLYRAARDGRIRALPGFGEKTENNILQAIEVHANQTRRFKLAIAAQYAEALEKFLV---- 176
Query: 364 EVLPEVI-ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGF--LSKY--VKKLKEMKFLRE 418
+P V+ + GSYRR + + GDLD++ + + + Y V ++ R
Sbjct: 177 -AIPGVLKVTVAGSYRRMRETVGDLDILATASTTATSQVVQRFTNYDEVAEILSAGPTRA 235
Query: 419 DLIFSTHSE---EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS 475
+I + V + Y L +TG+ N +R +A+ G ++++ G+F
Sbjct: 236 SVILKCGLQVDLRVVKEESYGAALHYFTGSKSHNIAIRRMAQKSGLKINEYGVF------ 289
Query: 476 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
R +T + +TE V+ +G ++ P R
Sbjct: 290 ------RDKTRIAGETEASVYAAVGLSYIPPELR 317
>gi|298674967|ref|YP_003726717.1| PHP domain-containing protein [Methanohalobium evestigatum Z-7303]
gi|298287955|gb|ADI73921.1| PHP domain protein [Methanohalobium evestigatum Z-7303]
Length = 573
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 78/153 (50%), Gaps = 17/153 (11%)
Query: 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313
D++ +PG+GKS ++ I +I+ TG S+ E ++ V L + G+GP Q LY+
Sbjct: 51 DRLDSIPGVGKSFKNKIVDILNTGTFSEYEKIRQEIPVNIEELMA-IPGMGPRITQFLYK 109
Query: 314 K-GHRTLDDLKNEDSLTHSQR----LGLKYFDDIKTRIPRHEVEQMERLLQKAGEEV--- 365
+ G RT+DDLK E + TH R +G + I I R+E +R+L + +V
Sbjct: 110 RLGIRTIDDLK-EAARTHRIRRLPNMGAIKEERILNAIKRYEKRGADRILLETARQVADD 168
Query: 366 -------LPEVIILCGGSYRRGKASCGDLDVVI 391
+P + GS RR K + ++++++
Sbjct: 169 IKSILETIPYTKVSVVGSVRRQKETVNNINLIV 201
>gi|406834591|ref|ZP_11094185.1| DNA-directed DNA polymerase [Schlesneria paludicola DSM 18645]
Length = 572
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 74/326 (22%), Positives = 131/326 (40%), Gaps = 40/326 (12%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESADQVKG-----LPGIG 263
N++I +F ++ ++ G + R +Y +E L + G L GIG
Sbjct: 3 NQHIAALFNEVADLLEIQGANSFRVRAYRNGARTLENLSQSVAELVAAPGGGLETLDGIG 62
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDL 322
K + I ++ TG+L +LE + + + + G+GP L+ E +L+ L
Sbjct: 63 KDLASKIAVVLQTGQLPQLEELRQQVPAGVVEML-RIPGLGPKKVAALFHELTITSLEQL 121
Query: 323 K---NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI--------- 370
K + + G K I +P H +E +R L E++
Sbjct: 122 KIACEAGKVAELKGFGKKTEKSILEGLP-HALEAGKRFLISVARASADEIVADLKQLPTV 180
Query: 371 --ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY--VKKLKEMKFLREDLIFSTHS 426
+ GS RR K +CGDLD++ D L+ + V+K+ +E + T
Sbjct: 181 SQVSVAGSCRRRKETCGDLDILATADDSTVVMDRLAAHPLVEKVLARGETKERVRLHTGI 240
Query: 427 E---EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRA 483
E V P + Y + +TG+ N +R A +G ++++ G+F GK
Sbjct: 241 ELDLRVVPIESYGAAMQYFTGSKEHNIVIRKRAIERGLKVNEYGVFRGDEYVAGK----- 295
Query: 484 RTSLKFDTEKEVFDFLGFPWLEPHER 509
TE++V+ +G P + P R
Sbjct: 296 -------TEEDVYAAVGLPVIPPELR 314
>gi|397779792|ref|YP_006544265.1| DNA polymerase (family X) [Methanoculleus bourgensis MS2]
gi|396938294|emb|CCJ35549.1| DNA polymerase (family X) [Methanoculleus bourgensis MS2]
Length = 577
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 81/331 (24%), Positives = 132/331 (39%), Gaps = 51/331 (15%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESA---DQVKGLPGIGKSM 266
N + + ++ ++ G + +Y +A IE LP I ++ +PG+GK +
Sbjct: 9 NIEVAAVLYEVADLLEIKGVRFKPHAYRRAAQAIETLPEDIADVAREGRLGEIPGVGKGI 68
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNE 325
+ E+V TG L LE ++E + + GIGP A L E G RT+DDL+
Sbjct: 69 AGKVMEVVETGSLGYLESL-REELPEGVQELTRIEGIGPKKALVLSRELGIRTIDDLEAA 127
Query: 326 DSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKAGEE-----VLPEVIIL----- 372
+ + L G K +I I QM R+ AG+ +LP ++
Sbjct: 128 ATAGRIRDLPGFGEKTEQNILAGI------QMSRM---AGKRHLLGYILPTARVIERRLS 178
Query: 373 ---------CGGSYRRGKASCGDLDVVI--MHPDRKSHKGFLSKYVKKLKEMKFLREDLI 421
GS RR K + GDLD++ P+ V ++ + ++
Sbjct: 179 SLGSVGQVSLAGSIRRRKETIGDLDLLATSTRPEEVMEVFATLPGVSRVLARGTTKTSVV 238
Query: 422 FSTHSE---EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGK 478
T + V Y L +TG+ N LR LA ++ +RL++ GL G
Sbjct: 239 LETGLQVDLRVVEEKHYGAALQYFTGSKEHNIALRKLAIARNWRLNEYGLVDLADGR--- 295
Query: 479 QGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ + E V+ LG W+EP R
Sbjct: 296 -------MIAGEDEAGVYRALGLSWIEPELR 319
>gi|134095542|ref|YP_001100617.1| DNA polymerase [Herminiimonas arsenicoxydans]
Length = 528
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 119/275 (43%), Gaps = 42/275 (15%)
Query: 259 LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHR 317
LPGIG + I EIVTTG + E + E +I + G+GP + LY E+ +
Sbjct: 11 LPGIGIDLAGKIVEIVTTGTCALREQLHR-ELPSSIHELLNLPGLGPKRVKALYQERNIQ 69
Query: 318 TLDDLKNEDS-----------LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGE--- 363
TLD L + + QR+ L+ +++ R+ ++ E + AG
Sbjct: 70 TLDQLYSSACNGQIRNVPGFGIRTEQRI-LEAIRAQQSKKKRYRLDLAETI---AGSLLK 125
Query: 364 --EVLPEV-IILCGGSYRRGKASCGDLDVVI--MHPDRK-SHKGFLSKYVKKLKEMKFLR 417
+ P V I GS+RR + + GDLD++I HPD H + V+ L + K R
Sbjct: 126 YFQASPHVRKIDIAGSFRRRQETVGDLDILISSSHPDSVIQHFIKFEEIVQVLAQGK-TR 184
Query: 418 EDLIFSTHSE---EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYG 474
++ + V + L TG+ N +R LA+ +G ++++ G+F
Sbjct: 185 ASVVLRQGMQVDLRVVANVSFGAALYYSTGSKAHNIAVRTLAQKRGLKINEYGVFSGAQR 244
Query: 475 SGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
G +TE VF +G P++EP R
Sbjct: 245 IAG------------ETELTVFQSVGLPYIEPELR 267
>gi|390959340|ref|YP_006423097.1| DNA polymerase IV [Terriglobus roseus DSM 18391]
gi|390414258|gb|AFL89762.1| DNA polymerase IV (family X) [Terriglobus roseus DSM 18391]
Length = 584
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 118/310 (38%), Gaps = 43/310 (13%)
Query: 232 RSFSYYKAIPVIEK----LPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEK 287
R SY +A +E+ L ++ Q+ + GIGK M +I ++ TG + +
Sbjct: 21 RVRSYRRAAEAVEQQTTPLASLVDDPKQLLAIAGIGKGMAANIVDLERTGSMPLRDELLT 80
Query: 288 DEKVRTISLFGEVWGIGPATAQKLYE----KGHRTLDDLKNEDSLTHSQRLGLKYFDDIK 343
+ + L + +GP T L+ + L+ E L R G K D +
Sbjct: 81 KYRPSMLDLL-RLPSMGPKTVALLFSALQIENMDQLETAAKEGHLAKLPRFGQKQVDKLL 139
Query: 344 TRIPRHEVEQMERLLQKAGEEV---------LPEV-IILCGGSYRRGKASCGDLDVVIMH 393
I H + AGE P + I GS RRG+ + GDLD+++
Sbjct: 140 KGIEDHRRNSGRFRIDNAGETADKIAAMLREFPGIETITPAGSLRRGRETVGDLDLLVTG 199
Query: 394 PDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEV--------------YPRDIYAFGL 439
P +S V+ + + + D++ + +V PR Y L
Sbjct: 200 P--ACEADVVSAAVEYVATLPLI--DVLLAKGQNKVSFTLRNGLQVDVRLLPRASYGAAL 255
Query: 440 IAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFL 499
+TG+ + N LR A +GY L + L G V A TE+E++ L
Sbjct: 256 QYFTGSKMHNVSLRQKALKRGYTLSEYALARLNPEEGESSIVAAA------TEEEIYAAL 309
Query: 500 GFPWLEPHER 509
G W+ P R
Sbjct: 310 GMQWIAPELR 319
>gi|262199755|ref|YP_003270964.1| DNA-directed DNA polymerase [Haliangium ochraceum DSM 14365]
gi|262083102|gb|ACY19071.1| DNA-directed DNA polymerase [Haliangium ochraceum DSM 14365]
Length = 586
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 129/287 (44%), Gaps = 48/287 (16%)
Query: 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 311
S ++K + G+G S I+E++ TG + KLE + L + G+GP T +L
Sbjct: 58 SVRELKAIDGVGASTAAKIRELLDTGAIDKLEKLRAKYPPAFVEL-SRIPGLGPKTLMRL 116
Query: 312 Y-EKGHRTLDDL-----------------KNEDSLTHS-QRLGLKYFDDIKTRIPRHEVE 352
E ++DDL K+ED+L + +RLG+ D R P +
Sbjct: 117 RGELDVHSVDDLRKALEAKKLRTLSGFGAKSEDNLRRAIERLGMSGKD---RRTPIADAL 173
Query: 353 QMERLLQKAGEEVLPEV--IILCGGSYRRGKASCGDLDVVIMHPDRKS-HKGFLSKYVKK 409
+ + + A E LPEV + C GS RR + + GD+D+V+ D + F++ V
Sbjct: 174 PIAQRI-TAALEALPEVERVSYC-GSLRRFRETIGDIDIVVAAGDSAPVMEAFVALNV-- 229
Query: 410 LKEMKFLREDLIFSTHSEEVYPRDI-----YAFG--LIAWTGNDVLNRRLRLLAESKGYR 462
+ E+ R D S + E D+ AFG ++ +TG+ N +LR A +G
Sbjct: 230 VAEV-LARGDTKTSVLTREGLQIDLRVVAPAAFGAAILYFTGSRNHNIKLRQRALQRGAT 288
Query: 463 LDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
L++ GL + G L ++E+ +++ L PW+ P R
Sbjct: 289 LNEYGLSDSDSGE----------VLASESEEAIYEALSLPWIPPPMR 325
>gi|345011461|ref|YP_004813815.1| PHP domain-containing protein [Streptomyces violaceusniger Tu 4113]
gi|344037810|gb|AEM83535.1| PHP domain protein [Streptomyces violaceusniger Tu 4113]
Length = 581
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 76/319 (23%), Positives = 125/319 (39%), Gaps = 64/319 (20%)
Query: 228 GEDRRSFSYYKAIPVIEKLPFKIESADQ--VKGLPGIGKSMQDHIQEIVTTGKLSKLEHF 285
G+ R+ +Y KA I I D ++ +P +G+S D + E + TG + +E
Sbjct: 24 GDAYRARAYEKAARAIGGHAADISQFDAKALRDIPNVGRSTADKVVEYLRTGTMPAVEEA 83
Query: 286 EKD--EKVRTISLFGEVWGIGPATAQKLYEK-------------GHRTLDDLK-----NE 325
VR ++ + +GP A LYE+ L DLK +E
Sbjct: 84 RAAIPAGVRELT---AIPALGPKKAMILYEELEISSVDQLAQAIEEHQLRDLKGFGPKSE 140
Query: 326 DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
+++ H G+ RIP E + + A +V GS RR K + G
Sbjct: 141 ENILH----GIALMRAAGDRIPLDEAMDVADDIVAALSKVRGCRRCAYAGSLRRMKETVG 196
Query: 386 DLDVVIMHPDRKSHKGFLSKYV---------------KKLKEMKFLREDLIFSTHSEEVY 430
D+D+++ D F+ + ++ K L+ DL V
Sbjct: 197 DVDILVAAEDSGP---FMEAFTGLPLTAEVIAHGQKKTSIRTTKGLQVDL-------RVL 246
Query: 431 PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFD 490
P D + GL+ +TG+ N R+R +A G +L + GLF G S+
Sbjct: 247 PLDSWGAGLLYFTGSKAHNIRVRAIAVRHGLKLSEYGLFETKSGK----------SIASR 296
Query: 491 TEKEVFDFLGFPWLEPHER 509
+E++V+ LG W+ P R
Sbjct: 297 SEEDVYARLGMDWIPPTLR 315
>gi|309782694|ref|ZP_07677415.1| cell division topological specificity factor MinE [Ralstonia sp.
5_7_47FAA]
gi|308918472|gb|EFP64148.1| cell division topological specificity factor MinE [Ralstonia sp.
5_7_47FAA]
Length = 580
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 71/327 (21%), Positives = 130/327 (39%), Gaps = 43/327 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSF---SYYKAIPVIEKLPFKIES----ADQVKGLPGI 262
N+ I IF ++ N+ E+ F +Y A ++E L +++ + LPG+
Sbjct: 10 NQAIAAIFNEIANLLEI--EEANPFRVRAYRNAARMVEGLTEGVDAMLARGADLTALPGV 67
Query: 263 GKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL 322
G + ++EIV TG + L + + L +E G +LD+L
Sbjct: 68 GVDLAAKMREIVETGSCAMLTRVRTEVPAYVLQLLQLPGLGPRRARALQHELGITSLDEL 127
Query: 323 KNEDSLTHSQRL-GL------KYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCG- 374
+ + L G + + + R+ R + + K + L ++ G
Sbjct: 128 ARAAAAHRIRELHGFGARSEQRLLEALNARLTRDRRYGLA--IAKPCADALTHYLLASGL 185
Query: 375 -------GSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKF--LREDLIFSTH 425
GSYRRG+ + GDLD++I R L Y + + R ++
Sbjct: 186 VDQLVVAGSYRRGRDTVGDLDLLITGRKRAQIVEHLVHYNEVATRISAGPTRASVVLKNG 245
Query: 426 SE---EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVR 482
+ V D + L+ +TG+ N LR LA+++G ++++ G+F R
Sbjct: 246 MQVDLRVVRPDAFGAALVYFTGSKPHNIALRKLAQAQGLKINEYGVF------------R 293
Query: 483 ARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ + TE V+ +G PW+ P R
Sbjct: 294 GKERIAGQTEASVYRAVGLPWICPELR 320
>gi|404397391|ref|ZP_10989182.1| hypothetical protein HMPREF0989_02834 [Ralstonia sp. 5_2_56FAA]
gi|348614002|gb|EGY63565.1| hypothetical protein HMPREF0989_02834 [Ralstonia sp. 5_2_56FAA]
Length = 582
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 71/327 (21%), Positives = 130/327 (39%), Gaps = 43/327 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSF---SYYKAIPVIEKLPFKIES----ADQVKGLPGI 262
N+ I IF ++ N+ E+ F +Y A ++E L +++ + LPG+
Sbjct: 12 NQAIAAIFNEIANLLEI--EEANPFRVRAYRNAARMVEGLTEGVDAMLARGADLTALPGV 69
Query: 263 GKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL 322
G + ++EIV TG + L + + L +E G +LD+L
Sbjct: 70 GVDLAAKMREIVETGSCAMLTRVRTEVPAYVLQLLQLPGLGPRRARALQHELGITSLDEL 129
Query: 323 KNEDSLTHSQRL-GL------KYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCG- 374
+ + L G + + + R+ R + + K + L ++ G
Sbjct: 130 ARAAAAHRIRELHGFGARSEQRLLEALNARLTRDRRYGLA--IAKPCADALTHYLLASGL 187
Query: 375 -------GSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKF--LREDLIFSTH 425
GSYRRG+ + GDLD++I R L Y + + R ++
Sbjct: 188 VDQLVVAGSYRRGRDTVGDLDLLITGRKRAQIVEHLVHYNEVATRISAGPTRASVVLKNG 247
Query: 426 SE---EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVR 482
+ V D + L+ +TG+ N LR LA+++G ++++ G+F R
Sbjct: 248 MQVDLRVVRPDAFGAALVYFTGSKPHNIALRKLAQAQGLKINEYGVF------------R 295
Query: 483 ARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ + TE V+ +G PW+ P R
Sbjct: 296 GKERIAGQTEASVYRAVGLPWICPELR 322
>gi|229918289|ref|YP_002886935.1| hypothetical protein EAT1b_2572 [Exiguobacterium sp. AT1b]
gi|229469718|gb|ACQ71490.1| PHP domain protein [Exiguobacterium sp. AT1b]
Length = 564
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 72/298 (24%), Positives = 130/298 (43%), Gaps = 39/298 (13%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
++ KA +E ++E D + + GIGK ++E TG+ LE +++ +
Sbjct: 29 AFRKAATALENTDLELEDIDDLTSISGIGKGTAAVLEEYRDTGRSEVLEALQEEIPFGLM 88
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDLKN--EDSLTHS---------QRLGLKYFDDIK 343
L ++ G+G KL E G L+ L ED S ++L L +++
Sbjct: 89 KLL-KIQGLGGKKLAKLREIGVVDLESLIRVLEDGTAASLPGFGAKSVEKL-LAAAKNLE 146
Query: 344 TRIPRHEVEQMERLLQKAGEEVLPEVIIL---CGGSYRRGKASCGDLDVVIM--HPDRKS 398
+R R M ++++ E + E ++L GGS+RR + +C DLD +I P
Sbjct: 147 SRPERLAYAVMRPIVEEINEVLEKETLVLRHSVGGSFRRAEETCKDLDFIIATEEPIELR 206
Query: 399 HKGFLSKYVKKLKEMKFLREDLIFSTHSEEVYPRDI-------YAFGLIAWTGNDVLNRR 451
K ++ ++ + L+ EE+ D +A L +TG+ N R
Sbjct: 207 EKLLALPFINEVIAAGETKVSLVL--EREEMVSVDFRMVEPGAFAATLHHFTGSKDHNVR 264
Query: 452 LRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+R LA++KG + + YG G+ + +TE+E+F+ G P++ P R
Sbjct: 265 MRQLAKAKGESISE-------YGVETADGL-----WQPETEEELFERYGLPFIPPELR 310
>gi|167584773|ref|ZP_02377161.1| DNA polymerase IV (family X) [Burkholderia ubonensis Bu]
Length = 602
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 69/329 (20%), Positives = 131/329 (39%), Gaps = 46/329 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVI----EKLPFKIESADQVKGLPGIGK 264
N +F ++ ++ G + R +Y A I +P + D + +P IG
Sbjct: 19 NAECAAVFAEIADMLEIQGANPFRVRAYRNAARTIADYGRDIPTMVAHGDDLGRIPSIGA 78
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLDDLK 323
+ ++EI TG + + L +V G+G + L+E H TL++LK
Sbjct: 79 DLASKLREIAATGTCELQQTLRHALPAAIVELL-DVPGLGAKRVKALHEGLHVDTLEELK 137
Query: 324 NEDSLTHSQRL---GLK----YFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI------ 370
+ L G K + I TR+ + +R L E+ L ++
Sbjct: 138 AAAKTGRVRELPGFGAKSEAHLLEAIDTRLDHAQ----QRFLLPFAEQCLTPLLERLRAV 193
Query: 371 -----ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY--VKKLKEMKFLREDLIFS 423
+ GS+RR + + GDLD+++ D + Y V+++ R ++
Sbjct: 194 PGVGDTVPAGSFRRRRETVGDLDILVTASDPAAVTDAFVGYAEVERVLASGATRSSVVLH 253
Query: 424 THSE---EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
+ + V D + L+ +TG+ N LR +A++ G ++++ G+F
Sbjct: 254 SGIQVDLRVVDADAFGAALVYFTGSKAHNIALRRIAQAGGLKINEYGVF----------- 302
Query: 481 VRARTSLKFDTEKEVFDFLGFPWLEPHER 509
R + TE V++ +G W+ P R
Sbjct: 303 -RDDERIAGATEASVYESIGLRWVPPELR 330
>gi|268323588|emb|CBH37176.1| conserved hypothetical protein, containing PHP domain [uncultured
archaeon]
Length = 577
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 150/331 (45%), Gaps = 48/331 (14%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIE------SADQVKGLPG 261
+N ++ IF ++ +I+ GE+ +Y +A IE L ++ ++K +PG
Sbjct: 2 INLDMARIFDEIADIFEVKGENPFKIRAYRRAARTIESLTQDLKVIAERGGVSELKKIPG 61
Query: 262 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISL-FGEVWGIGPATAQKLY-EKGHRTL 319
+G+ + I EI TG K H E ++V + L + +GP T K++ E G ++
Sbjct: 62 VGEGIAKKILEIAETGDCKK--HIELKQEVPSGVLELLAIPRVGPKTIAKVHDELGICSI 119
Query: 320 DDLKNEDSLTHSQR----LGLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVLPEVI-- 370
DL+ E + +H + LG K ++I I ++ + LL +A E ++ E+
Sbjct: 120 ADLE-EAARSHKLKKLPGLGAKVEENILKGIAQYRSYKGRVLLSEALPRAESIVTELKKL 178
Query: 371 -----ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY-----VKKLKEMKFLREDL 420
I GS RR + + GD+D++++ K + ++ + V+ + + +
Sbjct: 179 DAVAKITIAGSLRRMRETIGDIDILVVS---KRPRDIMNAFTCLDGVEDIVAKGDTKSSI 235
Query: 421 IFSTHSEEVYPRDIYAFGLIA--WTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGK 478
+ S ++ D +FG A +TG+ N R+R L +G ++++ G+F GG+
Sbjct: 236 LLRGISVDLRVVDEASFGAAAHYFTGSKHHNIRIRELGMKQGLKINEYGIFRGDERIGGE 295
Query: 479 QGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
E +VF +G ++ P R
Sbjct: 296 D------------EADVFASVGLAYIPPELR 314
>gi|20067737|emb|CAD29109.1| chimeric DNA-directed DNA polymerase xf4-7b [synthetic construct]
Length = 190
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 26/185 (14%)
Query: 340 DDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSH 399
+D + RIPR E+ QM+ ++ +++ PE I GS RR + D+D++I+ P++K
Sbjct: 16 EDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSLRREEKMLNDVDLLIIVPEKKLL 75
Query: 400 KG-----FLSKYVKKLKEMKFLREDLIFSTHSEEVYP------RDIYA----FGLIAWTG 444
K F++ + K E KF+ + S + E YP R I A + + +TG
Sbjct: 76 KHVLPNRFITDTLSK-GETKFMGVCQLPSENDENEYPHRRIDIRLIPAEEKPYAIFHFTG 134
Query: 445 NDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWL 504
R+R + K Y+L+ GLF + LK TEKE+ LGF +
Sbjct: 135 PVSYLIRIRAALKKKNYKLNQYGLFKN----------QTLVPLKITTEKELIKELGFTYR 184
Query: 505 EPHER 509
P +R
Sbjct: 185 IPKKR 189
>gi|448589970|ref|ZP_21650029.1| DNA polymerase IV [Haloferax elongans ATCC BAA-1513]
gi|445735085|gb|ELZ86638.1| DNA polymerase IV [Haloferax elongans ATCC BAA-1513]
Length = 582
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 82/331 (24%), Positives = 135/331 (40%), Gaps = 40/331 (12%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIES-----ADQVKGLPGIGK 264
N I + + + A G + + SY +A I + P IE D V+ + +G
Sbjct: 4 NDEIATLLEEFADRLDATGVEYKPSSYRRAAENIREHPKPIEDLAAEGEDAVQTIDRVGD 63
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 323
++ I E TG + +L+ +DE ++ V G+GP T LYE G LD+L+
Sbjct: 64 AISSKIVEYFETGHIEELDDL-RDELPVDMAGLTSVEGVGPKTVGTLYEALGITDLDELE 122
Query: 324 ---NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILC------- 373
+ + + G K +I I LL KA V +++
Sbjct: 123 AAARDGEIQEVKGFGAKTEQNILDGIDFARKSTGRELLGKA-RPVADDLLAYLSENNAVE 181
Query: 374 ----GGSYRRGKASCGDLDVVIM--HPDR--KSHKGF-LSKYVKKLKEMKF------LRE 418
GS RR + + GD+D+++ HP S F L+ + + E K +R
Sbjct: 182 RAEPAGSMRRWRETVGDIDILVASDHPQSVIDSFVDFELTGDIIEAGEQKASIRVNAMRV 241
Query: 419 DLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGK 478
DL V D Y L +TG+ N LR +A +G ++++ G+F + S
Sbjct: 242 DL-------RVVDPDEYGAALQYFTGSKDHNVHLRNIAIDRGLKMNEYGMFDISAVSDAD 294
Query: 479 QGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
G R + DTE+ ++ L P + P R
Sbjct: 295 DGPRVGERVGGDTEESMYAALDVPLVPPEMR 325
>gi|354613311|ref|ZP_09031236.1| PHP domain protein [Saccharomonospora paurometabolica YIM 90007]
gi|353222353|gb|EHB86666.1| PHP domain protein [Saccharomonospora paurometabolica YIM 90007]
Length = 574
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 119/280 (42%), Gaps = 44/280 (15%)
Query: 253 ADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY 312
AD+++ +PG+G S+ + E + TG+++ LE + + E+ +GP A +++
Sbjct: 51 ADELRAVPGVGSSIAKKVDEYLRTGRVAALERL-RGRIPAGVRALTEIPTLGPRKAMQIH 109
Query: 313 -EKGHRTLDDL-----------------KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQM 354
E G ++D+L + E++L R G+ + R+ +
Sbjct: 110 TELGVSSVDELERALDAERVRELKGFGPRTEENL----RRGIDVLRQSEGRVHLDVALSV 165
Query: 355 ERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMK 414
+ A EV+ V GS RR + + GD+DV+ D ++ +V+ + +
Sbjct: 166 AEEVTAALREVIGCVDCAWAGSLRRMRETVGDVDVLASAEDSAP---LMAAFVELPQVAE 222
Query: 415 FLREDLI---FSTHSE-----EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDT 466
L TH + P + L +TG+ N R R +A G++L +
Sbjct: 223 VLAHGTTKTSVRTHKNLQVDLRLVPPQAWGAALQYFTGSKAHNIRTRGIAVRHGWKLSEY 282
Query: 467 GLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEP 506
GLF A + V +R TE++V+ LG PW+ P
Sbjct: 283 GLFDADT----DELVVSR------TEEDVYARLGLPWIPP 312
>gi|172063147|ref|YP_001810798.1| phosphotransferase domain-containing protein [Burkholderia
ambifaria MC40-6]
gi|171995664|gb|ACB66582.1| PHP domain protein [Burkholderia ambifaria MC40-6]
Length = 592
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 78/335 (23%), Positives = 136/335 (40%), Gaps = 52/335 (15%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEK----LPFKIESADQVKGLPG 261
P N +F ++ ++ G + R +Y A I + +P I + + +P
Sbjct: 2 PIHNAECAAVFAEIADMLEIQGANPFRVRAYRNAARTIAEYGRDIPAMIANGSDLSQIPS 61
Query: 262 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLD 320
IG + ++EI TG +L+ + I +V G+G + L++ H +L+
Sbjct: 62 IGADLAAKLREIAATGT-CELQQTLRHALPGAIVELLDVPGLGAKRVKALHDALHVDSLE 120
Query: 321 DLKNEDSLTHSQRL---GLK----YFDDIKTRIPRHEVE------------QMERLLQKA 361
L+ E H + L G K D I R+ R +ERL Q A
Sbjct: 121 QLRAEAKSGHVRALPGFGAKTEAHLLDAIDERLQREPQRFLLPDAAQSLRPMLERLRQVA 180
Query: 362 G-EEVLPEVIILCGGSYRRGKASCGDLDVVI-MHPDRKSHKGFLS--KYVKKLKEMKFLR 417
G E +P GS+RR + + GDLD+++ F+S V+ L K R
Sbjct: 181 GVGEAVP------AGSFRRCRETVGDLDILVSAQDAAAVADAFVSCGDVVRVLANGK-TR 233
Query: 418 EDLIFSTHSE---EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYG 474
++F + V D + L+ +TG+ N LR +A++ G ++++ G+F
Sbjct: 234 SSVMFGNGLQVDLRVVDADAFGAALVYFTGSKAHNIALRRIAQAGGLKINEYGVF----- 288
Query: 475 SGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
R + TE V++ +G W+ P R
Sbjct: 289 -------RGDERIAGATEASVYEAIGLRWVPPELR 316
>gi|448358656|ref|ZP_21547333.1| DNA-directed DNA polymerase [Natrialba chahannaoensis JCM 10990]
gi|445645238|gb|ELY98244.1| DNA-directed DNA polymerase [Natrialba chahannaoensis JCM 10990]
Length = 583
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 88/340 (25%), Positives = 148/340 (43%), Gaps = 57/340 (16%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKG--------LPG 261
N + F + ++ A + + +Y +A I P I DQV + G
Sbjct: 4 NAELAGRFEEFADLLEADDVEYKPRAYRRAAENIRAYPVPI--GDQVADGNEEILDEIDG 61
Query: 262 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLD 320
+G ++ I E V TG++ +LE + + + I+ + G+GP TA KLY E G TLD
Sbjct: 62 VGDAISAKIVEYVETGEIEELEELKAELPI-DIADITRIEGVGPKTAGKLYRELGIETLD 120
Query: 321 DLKNEDSLTHSQRLGLKYF-----DDIKTRIP-RHEVEQMERLLQKAGEEVLPEVIIL-- 372
+L ED+ S+ G+K F ++I+ I EV Q R L G + +V+
Sbjct: 121 EL--EDAAEASEIQGVKGFGPKTEENIRDNIEFAREVGQ--RQLLGEGRPLADDVLAFLE 176
Query: 373 -------C--GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYV--------------KK 409
C GS RR + + GD+DV++ + ++ + ++V K
Sbjct: 177 SLEGVERCEVAGSIRRWRETIGDVDVLVATNENET---VIEQFVGWNSVDSEIESGPAKA 233
Query: 410 LKEMKFLREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLF 469
+ R DL V D + L +TG+ N RLR A +G ++++ G+F
Sbjct: 234 SVRIGESRVDL-------RVVVPDEFGSALQYFTGSKDHNVRLRNYAIDRGLKVNEYGVF 286
Query: 470 PATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ G +G R + +TE +++ LG PW+ P R
Sbjct: 287 DVSDLDEGDEGQRVGERIAGETEDGMYNALGLPWIPPELR 326
>gi|448284480|ref|ZP_21475740.1| DNA-directed DNA polymerase [Natrialba magadii ATCC 43099]
gi|445570815|gb|ELY25374.1| DNA-directed DNA polymerase [Natrialba magadii ATCC 43099]
Length = 583
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 137/306 (44%), Gaps = 37/306 (12%)
Query: 231 RRSFSYYKAIPVIEKLPFKIESADQ--VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKD 288
RR+ +A PV + ++ D+ + + G+G ++ I E V TG++ +LE + +
Sbjct: 31 RRAAENIRAHPV--PIGDRVADGDEEILDEIDGVGDAISAKIVEYVETGEIEELEELKAE 88
Query: 289 EKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNEDSLTHSQRL---GLKYFDDIKT 344
+ I+ + G+GP TA KLY E G TLDDL++ Q + G K ++I+
Sbjct: 89 LPI-DIADITRIEGVGPKTAGKLYRELGIETLDDLEDAAEAGEIQEVKGFGPKTEENIRD 147
Query: 345 RIPRHEVEQMERLLQKA---GEEVLP-----EVIILC--GGSYRRGKASCGDLDVVIMHP 394
I +LL +A ++VL + + C GS RR + + GD+DV++
Sbjct: 148 NIEFAREVGQRQLLGEARPLADDVLAFLESLDAVERCEVAGSIRRWRETIGDVDVLVATN 207
Query: 395 DRKS-----------HKGFLSKYVKKLKEMKFLREDLIFSTHSEEVYPRDIYAFGLIAWT 443
+ ++ S K + R DL SE + L +T
Sbjct: 208 ENETVVEEFVGWNSVDSEIESGPAKASVRIGESRVDLRVVVPSE-------FGSALQYFT 260
Query: 444 GNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPW 503
G+ N RLR A +G ++++ G+F + G +G R + +TE +++ LG PW
Sbjct: 261 GSKDHNVRLRNYAIDRGLKVNEYGVFDVSDLDEGDEGQRVGERIAGETEDGMYNALGLPW 320
Query: 504 LEPHER 509
+ P R
Sbjct: 321 IPPELR 326
>gi|448613421|ref|ZP_21663301.1| DNA polymerase IV [Haloferax mucosum ATCC BAA-1512]
gi|445740318|gb|ELZ91824.1| DNA polymerase IV [Haloferax mucosum ATCC BAA-1512]
Length = 582
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 80/330 (24%), Positives = 136/330 (41%), Gaps = 38/330 (11%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIES-----ADQVKGLPGIGK 264
N + + + ++ A G + SY +A + + P IES D VK + +G
Sbjct: 4 NDEVAALLEEFADLLDANGVAYKPSSYRRAAENVREHPNPIESLAAEGEDTVKTVNRVGD 63
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 323
++ I E + TG + +L+ ++ V L V G+GP T LYE+ G LD+L+
Sbjct: 64 AIASKIVEYIETGHIEELDALREELPVDMAGLTS-VEGVGPKTVGTLYEELGITDLDELE 122
Query: 324 N---EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKA---GEEVLPEVIILCG--- 374
E + + G K +I I +LL A +++ + L G
Sbjct: 123 TAAREGRIQEVKGFGAKTEANILDGIEFARQATGRQLLGNARPVADDLRSYLADLDGVGR 182
Query: 375 ----GSYRRGKASCGDLDVVIMHPDRKS---------HKG--FLSKYVKKLKEMKFLRED 419
GS RR + + GD+DV+ D +S H G + K + +R D
Sbjct: 183 VEPAGSMRRWRETVGDIDVLAESDDAESVIDHFLAWDHLGDTIEAGEQKASARVNAMRVD 242
Query: 420 LIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQ 479
L SE Y L +TG+ N LR +A +G ++++ G+F +
Sbjct: 243 LRVIDPSE-------YGAALQYFTGSKDHNVHLRNIAIDRGLKMNEYGMFDISDVDDPDG 295
Query: 480 GVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
G + +TE+ +++ LG P + P R
Sbjct: 296 GPHVGERIAGETEESMYEALGLPHVPPEMR 325
>gi|289580814|ref|YP_003479280.1| DNA-directed DNA polymerase [Natrialba magadii ATCC 43099]
gi|289530367|gb|ADD04718.1| DNA-directed DNA polymerase [Natrialba magadii ATCC 43099]
Length = 586
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 137/306 (44%), Gaps = 37/306 (12%)
Query: 231 RRSFSYYKAIPVIEKLPFKIESADQ--VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKD 288
RR+ +A PV + ++ D+ + + G+G ++ I E V TG++ +LE + +
Sbjct: 34 RRAAENIRAHPV--PIGDRVADGDEEILDEIDGVGDAISAKIVEYVETGEIEELEELKAE 91
Query: 289 EKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNEDSLTHSQRL---GLKYFDDIKT 344
+ I+ + G+GP TA KLY E G TLDDL++ Q + G K ++I+
Sbjct: 92 LPI-DIADITRIEGVGPKTAGKLYRELGIETLDDLEDAAEAGEIQEVKGFGPKTEENIRD 150
Query: 345 RIPRHEVEQMERLLQKA---GEEVLP-----EVIILC--GGSYRRGKASCGDLDVVIMHP 394
I +LL +A ++VL + + C GS RR + + GD+DV++
Sbjct: 151 NIEFAREVGQRQLLGEARPLADDVLAFLESLDAVERCEVAGSIRRWRETIGDVDVLVATN 210
Query: 395 DRKS-----------HKGFLSKYVKKLKEMKFLREDLIFSTHSEEVYPRDIYAFGLIAWT 443
+ ++ S K + R DL SE + L +T
Sbjct: 211 ENETVVEEFVGWNSVDSEIESGPAKASVRIGESRVDLRVVVPSE-------FGSALQYFT 263
Query: 444 GNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPW 503
G+ N RLR A +G ++++ G+F + G +G R + +TE +++ LG PW
Sbjct: 264 GSKDHNVRLRNYAIDRGLKVNEYGVFDVSDLDEGDEGQRVGERIAGETEDGMYNALGLPW 323
Query: 504 LEPHER 509
+ P R
Sbjct: 324 IPPELR 329
>gi|302391193|ref|YP_003827013.1| PHP domain-containing protein [Acetohalobium arabaticum DSM 5501]
gi|302203270|gb|ADL11948.1| PHP domain protein [Acetohalobium arabaticum DSM 5501]
Length = 571
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 75/309 (24%), Positives = 137/309 (44%), Gaps = 57/309 (18%)
Query: 235 SYYKAIPVIEKLPFKIE---SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
SYY I+ L I+ + ++++ + GIG+S+ I EI+ TG SK + +++ +
Sbjct: 29 SYYNVSKRIKNLETNIKKLVANNRLQDIEGIGESLAVTIDEILQTGTCSKYKELKEEIPI 88
Query: 292 RTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNEDSLTHSQRLG-------LKYFDDIK 343
+ + ++ G+GP + Y E G LD+LK ++L LK D I
Sbjct: 89 GLLEIL-DLPGVGPKKVKLFYDELGITDLDELKKAAKKQKLRKLSGIGAKTELKILDAIM 147
Query: 344 TRIPRHEVEQMERLLQKAGEEVLPEVIILCG-----------GSYRRGKASCGDLDVVIM 392
R++ +++ L A E E++ +C G RR K DLD++++
Sbjct: 148 KAKNRND--KIDLGLATALAE---ELLDICAKLKSVTKVEVVGGLRRKKELISDLDLLVV 202
Query: 393 HPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEV-----YPRDIYAF-------GLI 440
+ K + + +K++ + E L + S E+ P +I+ L+
Sbjct: 203 TDNSKQVR-------EVMKDVPLVTEVLTETDKSLELASKPGVPIEIFFIVEDEFYSALV 255
Query: 441 AWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLG 500
A TGN L LA KGY L++TG++ + +++ D+EKE++ L
Sbjct: 256 AATGNQEHYEALSELAAQKGYCLNNTGVYQ----------LDTNETVEIDSEKEIYQLLD 305
Query: 501 FPWLEPHER 509
P++ P R
Sbjct: 306 LPYIIPELR 314
>gi|20067721|emb|CAD29101.1| chimeric DNA-directed DNA polymerase xf5-2e [synthetic construct]
Length = 194
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 94/186 (50%), Gaps = 24/186 (12%)
Query: 340 DDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSH 399
+D + RIPR E+ QM+ ++ +++ PE I GS RR + D+D++I+ P++K
Sbjct: 17 EDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSLRREEKMLNDVDLLIIVPEKKLL 76
Query: 400 KG------FLSKYVKKLKEMKFLREDLIFSTHSEEVYPRDIYAFGLIA---------WTG 444
K F++ + K E KF+ + S + E YP LIA +TG
Sbjct: 77 KHVLPNIRFITDTLSK-GETKFMGVCQLPSENDENEYPHRRIDIRLIAEEKPYAIFHFTG 135
Query: 445 NDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWL 504
++ +R+ A KG+ +++ + P G GV A L D+E+++FD++ + +
Sbjct: 136 P--VSYLIRIRAALKGFTINEYTIRPL-----GVTGV-AGEPLPVDSEQDIFDYIQWRYR 187
Query: 505 EPHERN 510
EP +R+
Sbjct: 188 EPKDRS 193
>gi|20067715|emb|CAD29098.1| chimeric DNA-directed DNA polymerase xf5-2c [synthetic construct]
Length = 203
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 101/200 (50%), Gaps = 33/200 (16%)
Query: 336 LKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI-ILCG--GSYRRGKASCGDLDVVIM 392
+ + +D + RIPR E+ QM+ ++ +++ PE I +CG GS RR + D+D++I+
Sbjct: 11 VNHLEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFGSLRREEKMLNDVDLLII 70
Query: 393 HPDRKSHKGFLSKY-VKKL-------KEMKFLREDLIFSTHSEEVY----------PRDI 434
P++K K L +K+ E KF+ + S + E Y P+D
Sbjct: 71 VPEKKLLKHVLPNIRIKRFITDTLSKGETKFMGVCQLPSENDENEYPHRRIDIRLIPKDQ 130
Query: 435 YA----FGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFD 490
YA + + +TG ++ +R+ A KG+ +++ + P G GV A L D
Sbjct: 131 YAEEKPYAIFHFTGP--VSYLIRIRAALKGFTINEYTIRPL-----GVTGV-AGEPLPVD 182
Query: 491 TEKEVFDFLGFPWLEPHERN 510
+E+++FD++ + + EP +R+
Sbjct: 183 SEQDIFDYIQWRYREPKDRS 202
>gi|373952080|ref|ZP_09612040.1| PHP domain protein [Mucilaginibacter paludis DSM 18603]
gi|373888680|gb|EHQ24577.1| PHP domain protein [Mucilaginibacter paludis DSM 18603]
Length = 565
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 88/179 (49%), Gaps = 17/179 (9%)
Query: 243 IEKLPFKIESA--DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEV 300
++KLPF I S D+++ + GIGKS+ I E++TTG + +L+ + + G +
Sbjct: 37 VDKLPFAIASKPLDELEKIDGIGKSLAAKIAELLTTGTMIELDELLAATPPGVVEMMG-I 95
Query: 301 WGIGP-ATAQKLYEKGHRTLDDL---KNEDSLTHSQRLGLKYFDDIKTRIP--------- 347
GIGP A ++ T+ +L NE+ L ++ GLK ++I+ I
Sbjct: 96 KGIGPKKIAVIWHDLNIETVGELFYACNENRLIEAKGFGLKTQEEIRKAIEFRMASNGKF 155
Query: 348 -RHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSK 405
+VE + LQ+ +++LP+ ++ G YRR +L +VI D + G L +
Sbjct: 156 LYSQVEPLVAGLQEQLQKILPDAAMMVCGQYRRRCEIVTELCLVIGSGDPQEDIGVLQQ 214
>gi|283778801|ref|YP_003369556.1| PHP domain-containing protein [Pirellula staleyi DSM 6068]
gi|283437254|gb|ADB15696.1| PHP domain protein [Pirellula staleyi DSM 6068]
Length = 578
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 120/277 (43%), Gaps = 35/277 (12%)
Query: 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EK 314
+K + GIG + I +V TGKL+ L+ ++L + G+GP A LY E
Sbjct: 55 LKEIEGIGDDLAAKIIAMVETGKLAMLDELRSQVPESVLALL-RIPGVGPKKAAALYKEL 113
Query: 315 GHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRH----EVEQMERLLQKAGEEVLPEVI 370
G ++L++LK+ + + LK F ++ ER+L ++V+ ++
Sbjct: 114 GVKSLEELKS--ACEQGKVRELKGFAAKTEQLILQGLTIAAAGNERMLWYDADKVVQALL 171
Query: 371 -----------ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLRED 419
+ GSYRRGK S GDLD++++ D +K+ L+++ R D
Sbjct: 172 AHMRPCQAIDKLEVAGSYRRGKDSIGDLDLLVISRDVAGVMDHFAKF-PPLQDV-IARGD 229
Query: 420 LIFSTHSEEVYPRDIYAFG-------LIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPAT 472
S + D+ G L +TG+ N +LR LA+ +G ++++ G++
Sbjct: 230 TKMSIRLDSNLQVDLRVVGEESFGAALQYFTGSKEHNVKLRSLAKERGLKINEYGVYRVE 289
Query: 473 YGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ T + TE EV+ + P P R
Sbjct: 290 ADG-------SETLVAGSTEAEVYATVDLPCFPPESR 319
>gi|421470204|ref|ZP_15918604.1| PHP domain protein [Burkholderia multivorans ATCC BAA-247]
gi|400228302|gb|EJO58244.1| PHP domain protein [Burkholderia multivorans ATCC BAA-247]
Length = 587
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 70/327 (21%), Positives = 131/327 (40%), Gaps = 42/327 (12%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVI----EKLPFKIESADQVKGLPGIGK 264
N +F ++ ++ G + R +Y A I +P + Q+ +P IG
Sbjct: 5 NAECAAVFAEIADMLEIQGANPFRVRAYRNAARTIADYGRDIPSMLADGGQLVRIPSIGP 64
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLDDLK 323
+ ++EI TG + + + L +V G+G + L++ TL+ L+
Sbjct: 65 DLASKLREIAQTGTCDLQQTLRRALPGAIVQLL-DVPGLGAKRVKALHDALRIETLEQLR 123
Query: 324 NEDSLTHSQRLG----------LKYFDDIKTRIPRH-----EVEQMERLLQKAGEEVLPE 368
E H + L L D+ R PR + LL++ LP
Sbjct: 124 VETKNGHVRALPGFGAKTEAQLLDALDERLRRTPRRCLLPAATGVLAPLLERL--RALPG 181
Query: 369 VI-ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSK--YVKKLKEMKFLREDLIFSTH 425
VI + GS RR + + GDLD+++ D + ++ V+++ R ++ +
Sbjct: 182 VIEAVAAGSVRRRRETVGDLDILVSARDAAAVADAFTRGDAVERVLAKGKTRSSIVLACG 241
Query: 426 SE---EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVR 482
+ V D + L+ +TG+ N LR +A++ G ++++ G+F R
Sbjct: 242 LQVDLRVVDADAFGAALVYFTGSKAHNIALRRIAQAAGLKINEYGVF------------R 289
Query: 483 ARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ TE V+D +G W+ P R
Sbjct: 290 GEERIAGATEASVYDAIGLQWVPPELR 316
>gi|94969416|ref|YP_591464.1| DNA polymerase X family protein [Candidatus Koribacter versatilis
Ellin345]
gi|94551466|gb|ABF41390.1| DNA polymerase X family protein [Candidatus Koribacter versatilis
Ellin345]
Length = 584
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 78/295 (26%), Positives = 124/295 (42%), Gaps = 43/295 (14%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIE---SADQ-VKGLPGIGK 264
N+ + IF + ++ G+D R SY +A +E P +I S D+ V +PGIGK
Sbjct: 3 NRQLANIFYETADLMEVQGDDPFRIRSYRRAAEALESQPTQIADIISDDKAVLAIPGIGK 62
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISL-FGEVWGIGPATAQKLYEKGHRTLDDLK 323
M ++QEI G+L KL H E EK R L ++ G+GP T ++ + DL
Sbjct: 63 GMLLNLQEIFREGRL-KL-HAELLEKYRPSMLELLKIQGLGPKTIALIWSAFQ--VSDLA 118
Query: 324 NEDSLTHSQRL----------------GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
++L +L ++ + I R +Q + EV
Sbjct: 119 GVETLAREGKLRTLPRLSEKTEQKILKSIETYRSISGRFLIDTADQTAEKMIAHLREVKG 178
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHK-------------GFLSKYVKKLKEMK 414
I GS RRG+ + GDLD+++ P K+ + G L VK ++
Sbjct: 179 VEKITPAGSLRRGRETVGDLDILVTGPCAKNEQQRDAVIEHILKFPGILDILVKGENKVS 238
Query: 415 F-LREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGL 468
F LR + + P + + + +TG+ N LR A GY L++ GL
Sbjct: 239 FKLRTGMQVDV---RILPPESFGAAMQYFTGSKNHNVTLRQRALKMGYTLNEYGL 290
>gi|448624081|ref|ZP_21670154.1| DNA polymerase X [Haloferax denitrificans ATCC 35960]
gi|445750048|gb|EMA01487.1| DNA polymerase X [Haloferax denitrificans ATCC 35960]
Length = 582
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 134/334 (40%), Gaps = 46/334 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP-----FKIESADQVKGLPGIGK 264
N I + + ++ A + SY +A + + P E D V+ + +G
Sbjct: 4 NDEIATLLEEFADLLEAKDVAYKPSSYRRAAENVREYPKPVEELAAEGEDAVQEIDRVGD 63
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 323
++ I E V TG++ +L ++ V L V G+GP T KLYE G LDDL+
Sbjct: 64 AIASKIVEYVETGRIEELAELREELPVDMAGLT-SVEGVGPKTVGKLYEALGVADLDDLE 122
Query: 324 ---NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCG------ 374
E + + G K +I I LL +A V +++ G
Sbjct: 123 AAAREGQIQEVKGFGAKTEANILDGIEFAREATGRELLGRA-RPVADDLLAYLGDHDAVG 181
Query: 375 -----GSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYV--------------KKLKEMKF 415
GS RR + + GD+DV+ D + + +++ K +
Sbjct: 182 RVEPAGSMRRWRETVGDIDVLAESADAAA---VIDRFLAWDLVGDTIEAGEQKASVRVNG 238
Query: 416 LREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS 475
+R DL +E Y L +TG+ N LR +A +G ++++ G+F + +
Sbjct: 239 MRVDLRVVDPAE-------YGAALQYFTGSKDHNVHLRNIAIDRGLKMNEYGMFDISDMA 291
Query: 476 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
G RA T + DTE+ ++ L P + P R
Sbjct: 292 DPDDGPRAGTRVAGDTEESMYAALDLPLVPPEMR 325
>gi|313680568|ref|YP_004058307.1| php domain protein [Oceanithermus profundus DSM 14977]
gi|313153283|gb|ADR37134.1| PHP domain protein [Oceanithermus profundus DSM 14977]
Length = 579
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 82/325 (25%), Positives = 138/325 (42%), Gaps = 44/325 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIESADQ-----VKGLPGIG 263
N I IF ++ ++ LG+ R +Y A + + IE + + LP IG
Sbjct: 7 NAEIARIFSEIADMLDFLGDSPFRVRAYRSAARYLMDMEEPIERVAEGGEKALDELPYIG 66
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDL 322
+ I E + TG++ K E +K + + V G+GP TA+ LY E G +L
Sbjct: 67 HDLAAKILEYLATGRVRKHEELKKQVPPGVLEVM-RVPGVGPKTAKLLYDELGVDSLAAF 125
Query: 323 KNEDSLTHSQRLGLKYFDDIKT---------------RIPRHEVEQMERLLQKAGEEVLP 367
K ++L + L L F + K R P EV + R L + E+ LP
Sbjct: 126 K--EALESGRVLELPGFGEKKRARLLHNLELVEAAGRRRPLGEVLWVARALVERLEQ-LP 182
Query: 368 EV-IILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY--VKKLKEMKFLREDLIFST 424
+V GS RR K + GDLD++ ++ ++ V ++ R + T
Sbjct: 183 QVEHAALAGSARRYKETVGDLDLLAASRRGRAVTDAFVRFPEVDEVLLSGASRATVFLKT 242
Query: 425 HSE---EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGV 481
+ ++ D + GL +TG+ + LR +A +G ++++ G++ GK
Sbjct: 243 GLQVDLKIVEPDAWGSGLQYFTGSKDHSIHLRTMALDRGLKINEYGVWKGARRIAGK--- 299
Query: 482 RARTSLKFDTEKEVFDFLGFPWLEP 506
TE+EV+ LG PW+ P
Sbjct: 300 ---------TEEEVYSALGLPWIPP 315
>gi|357633696|ref|ZP_09131574.1| PHP domain protein [Desulfovibrio sp. FW1012B]
gi|357582250|gb|EHJ47583.1| PHP domain protein [Desulfovibrio sp. FW1012B]
Length = 574
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 72/327 (22%), Positives = 133/327 (40%), Gaps = 41/327 (12%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVI----EKLPFKIESADQVKGLPGIGK 264
N +I IF ++ ++ G + R +Y A + E + + + + +PG+G+
Sbjct: 5 NSDIARIFDEVADLLEIEGANPFRVRAYRNAAQTVASLGEAVAGMVAAGRDLTEIPGVGQ 64
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 323
+ + IV TGKL L RT+ V G+GP L++ G L+ L+
Sbjct: 65 DLAGKMVAIVETGKLPLLAEL-AGRTPRTLEGLLAVPGLGPKRVAALHKALGITDLEGLR 123
Query: 324 NEDSLTHSQRL---GLKYFDDIKTRIPRHEVE-------------QMERLLQKAGEEVLP 367
+ Q L G K +I + R Q E L
Sbjct: 124 QAAAAGKLQTLPGFGAKAEANILAALDRKSKSGDTGRFTLAQAEPQAEALCAHLARSAGV 183
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY--VKKLKEMKFLREDLIFSTH 425
E +++ G SYRR + + GDLD+++ +++ V+++ R +I T
Sbjct: 184 ERVVVAG-SYRRRRETVGDLDLLVTGAADSPVLQDFTRFPDVRQVTAKGPTRAAVILRTG 242
Query: 426 SE---EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVR 482
+ + PR+ L +TG+ N +R L +KG+++++ G+F R
Sbjct: 243 LQVDARLVPRESCGAALHYFTGSKAHNLAVRNLGIAKGFKVNEYGVF------------R 290
Query: 483 ARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ TE+E++ +G ++EP R
Sbjct: 291 GEDRIAGRTEEEIYACMGLGYVEPELR 317
>gi|254253911|ref|ZP_04947228.1| DNA polymerase IV (family X) [Burkholderia dolosa AUO158]
gi|124898556|gb|EAY70399.1| DNA polymerase IV (family X) [Burkholderia dolosa AUO158]
Length = 588
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 73/331 (22%), Positives = 128/331 (38%), Gaps = 44/331 (13%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEK----LPFKIESADQVKGLPG 261
P N +F ++ ++ G + R +Y A I +P I S + +P
Sbjct: 2 PIHNAECAAVFAEIADMLEIQGANPFRVRAYRNAARTIANYGRDIPTLIASGGDLAKIPS 61
Query: 262 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLD 320
IG + ++EI TG + + + L +V G+G + L++ TL+
Sbjct: 62 IGADLASKLREIAATGTCELQQTLRRALPGAVVELL-DVPGLGAKRVKALHDALQVDTLE 120
Query: 321 DLKNEDSLTHSQRL---GLK----YFDDIKTRIPRHEVEQMERLLQKAGEEVLP------ 367
L+ E H + L G K D I R+ R E LL A ++P
Sbjct: 121 QLRAEAKSGHVRALPGFGAKTEAQLLDAIDERLQR---EPQRFLLPDAARSLMPLLERLR 177
Query: 368 ----EVIILCGGSYRRGKASCGDLDVVIM--HPDRKSHKGFLSKYVKKLKEMKFLREDLI 421
V + GS+RR + + GDLD+++ P H V ++ R ++
Sbjct: 178 AVDGVVEAVPAGSFRRRRETVGDLDILVTARDPAAVGHAFVACADVGRVLANGNTRSSVL 237
Query: 422 FSTHSE---EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGK 478
+ V D + L+ +TG+ N LR LA++ G ++++ G+F
Sbjct: 238 LKNGLQVDLRVVDADAFGAALVYFTGSKAHNIALRRLAQAAGLKINEYGVF--------- 288
Query: 479 QGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
R + TE V+ +G ++ P R
Sbjct: 289 ---RGDERIAGATEASVYAAIGLQYVPPELR 316
>gi|168699735|ref|ZP_02732012.1| DNA polymerase IV (family X) [Gemmata obscuriglobus UQM 2246]
Length = 581
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 80/311 (25%), Positives = 137/311 (44%), Gaps = 50/311 (16%)
Query: 232 RSFSYYKAIPVIEKLPFKIES--AD-QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKD 288
R+ +Y+ A V+++LP ++ AD ++ + GIG+++ I +VTTGKL LE
Sbjct: 26 RTNAYHNAARVVQQLPGDLKQLVADGKLGAVRGIGEALSLKITTLVTTGKLPYLEDLRAS 85
Query: 289 EKVRTISLFGEVWGIGPATAQKLYE-KGHRTLDDLK---NEDSLTHSQRLGLKYFDDIKT 344
+ L + G+GP + L++ G +++ LK + + G K D I
Sbjct: 86 IPAGMVELL-RLPGLGPKKVKALHDLLGIDSIEKLKAACESGQVAKQKGFGAKTQDKILE 144
Query: 345 RIP-RHEVEQMERL-----LQKAGEEVL---PEVII--LCGGSYRRGKASCGDLDVVIMH 393
I R +V R+ L A E + P VI LC GS RR K + DLD+++
Sbjct: 145 GIRFRDQVGHRVRIDYALPLGTALLEQIRGFPGVIRSELC-GSLRRRKETVADLDILVSS 203
Query: 394 PDRKSHKGFLSKYVKKLKEMKFL-----REDLIFSTHSE----------EVYPRDIYAFG 438
D + + ++VK + ++ L + ++ + H V D + F
Sbjct: 204 ADAQP---IMDRFVKLPEVLQVLGQGPTKSSVLAALHVHGTKVTMQADLRVVEDDQFPFA 260
Query: 439 LIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDF 498
L +TG+ N R+R A +G L++ L S+ TE+++F
Sbjct: 261 LHYFTGSKEHNIRMRQRAIDRGLTLNEYAL------------ANDSRSVPCKTEEDIFAA 308
Query: 499 LGFPWLEPHER 509
LG P++EP R
Sbjct: 309 LGLPYIEPELR 319
>gi|406899026|gb|EKD42415.1| hypothetical protein ACD_73C00166G0001, partial [uncultured
bacterium]
Length = 507
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 80/300 (26%), Positives = 132/300 (44%), Gaps = 41/300 (13%)
Query: 235 SYYKAIPVIEKLPFKIESA---DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
+Y KA V+E+ IE ++ L GIG+++ + I ++V TGKL E + +
Sbjct: 29 AYEKAARVLEQESRDIEELVERGELSALAGIGETLNEKITQLVKTGKLKFYEDLKAEIPE 88
Query: 292 RTISLFGEVWGIGPATAQKL-YEKGHRTLDDLK---NEDSLTHSQRLGLKYFDDIKTRIP 347
I L E+ GIGP A+ L Y+ G +++ +L+ E+ L + G K D+I I
Sbjct: 89 GLIQL-NELPGIGPKKARHLFYDLGLQSIGELEYACQENRLLKLKSFGEKTQDNILKAIK 147
Query: 348 RHEVEQMERL----LQKAGEEV------LPEVIILCGGSYRRGKASCGDLDVVIMHPDRK 397
++ L L +A E V +P + I GS RR K + GD+D+V+
Sbjct: 148 FYKKSHKRFLIPVALAQAQEFVDYLKAKIPHLKIEIAGSLRRKKETIGDIDLVV--ATEN 205
Query: 398 SHKGFLSKYVKKLKEMKFLRE-DLIFSTHSEEVYPRDI-------YAFGLIAWTGNDVLN 449
HK + +V + + L D + + DI Y F L TG+ N
Sbjct: 206 PHK-VMDAFVGYEQSAEILAHGDTKSALRLKSGIQVDIRCVSAVEYPFALHHLTGSKEHN 264
Query: 450 RRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
LR A++ G +L++ GLF + + E+E++ LG ++ P R
Sbjct: 265 VALRQQAQALGLKLNEYGLF------------KDEKLIPCKIEEEIYHVLGLSYVPPELR 312
>gi|271967572|ref|YP_003341768.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
gi|270510747|gb|ACZ89025.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
Length = 560
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 70/301 (23%), Positives = 130/301 (43%), Gaps = 45/301 (14%)
Query: 228 GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEK 287
G+ R SY KA I P I +A V+ +PG+G+++ ++E + G +L+ +
Sbjct: 24 GDAFRVRSYQKAAKAIAGFPEDI-AATAVRSVPGVGEAIAKKVEEYLERGSFRQLDDL-R 81
Query: 288 DEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRI 346
+ + + +GP A L+ E G + + L +++ + GLK F
Sbjct: 82 GKVPGGVRRLTRIASLGPKKAVFLFQELGIDSPEALA--EAIGQGRLKGLKGFGPKTEEN 139
Query: 347 PRHEVEQMERLLQKAGEEV---LPEVIILC--------GGSYRRGKASCGDLDVVIMHP- 394
+EQ+ER + V L E II GS RR K + GD+D++ + P
Sbjct: 140 LLRGIEQLERTSARVHTGVAMDLAERIIASLSAERIAYAGSLRRMKDTIGDIDILAVGPA 199
Query: 395 ---DRKSHKGFLSKYVKK------LKEMKFLREDLIFSTHSEEVYPRDIYAFGLIAWTGN 445
D + ++++ + ++ + ++ DL V P + + + +TG+
Sbjct: 200 SLMDDFKSRPYVAEVIASGEKKTSIRTTEGIQVDL-------RVVPAESWGAAMQYFTGS 252
Query: 446 DVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLE 505
N LR + KG++L + GLF G R + + E++++ LG PW+
Sbjct: 253 KEHNVHLREITVKKGWKLSEYGLF---------DGDRV---IAAEREEDIYQALGMPWIP 300
Query: 506 P 506
P
Sbjct: 301 P 301
>gi|421477725|ref|ZP_15925525.1| PHP domain protein [Burkholderia multivorans CF2]
gi|400226001|gb|EJO56119.1| PHP domain protein [Burkholderia multivorans CF2]
Length = 633
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 68/327 (20%), Positives = 132/327 (40%), Gaps = 42/327 (12%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVI----EKLPFKIESADQVKGLPGIGK 264
N +F ++ ++ G + R +Y A I +P + ++ +P IG
Sbjct: 50 NAECAAVFAEIADMLEIQGANPFRVRAYRNAARTIADYGRDIPSMLADGGELARIPSIGP 109
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLDDLK 323
+ ++EI TG + + + L +V G+G + L++ TL+ L+
Sbjct: 110 DLASKLREIAQTGTCELQQTLRRALPGAIVQLL-DVPGLGAKRVKALHDALRIETLEQLR 168
Query: 324 NEDSLTHSQRLG----------LKYFDDIKTRIPRH-----EVEQMERLLQKAGEEVLPE 368
E H + L L D+ R PR + + LL++ +P
Sbjct: 169 VETKNGHVRALPGFGAKTEAQLLDALDERLRRTPRRCLLPVATDVLAPLLERL--RAVPG 226
Query: 369 VI-ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSK--YVKKLKEMKFLREDLIFSTH 425
VI + GS RR + + GDLD+++ D + ++ V+++ R ++ +
Sbjct: 227 VIEAVAAGSVRRRRETVGDLDILVSARDAAAVADAFTRGDAVERVLAKGKTRSSIVLACG 286
Query: 426 SE---EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVR 482
+ V D + L+ +TG+ N LR +A++ G ++++ G+F R
Sbjct: 287 LQVDLRVVDADAFGAALVYFTGSKAHNIALRRIAQAAGLKINEYGVF------------R 334
Query: 483 ARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ TE V+D +G W+ P R
Sbjct: 335 GEERIAGATEASVYDAIGLQWVPPELR 361
>gi|149183060|ref|ZP_01861513.1| hypothetical protein BSG1_17740 [Bacillus sp. SG-1]
gi|148849241|gb|EDL63438.1| hypothetical protein BSG1_17740 [Bacillus sp. SG-1]
Length = 573
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 87/324 (26%), Positives = 141/324 (43%), Gaps = 39/324 (12%)
Query: 211 KNITEIFGKLINIYRAL-GEDRRSFSYY-KAIPVIEKLPFKIESADQVKGLPGIGKSMQD 268
KNI ++ + I IY L GE+ S + KA +E + D + GIGK
Sbjct: 6 KNIIKLL-ETIAIYMELKGENTFKVSAFRKAANALETDDRSLNEIDSFTAINGIGKGTAA 64
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRT-LDDLKN--- 324
I+E +T GK S LE +++ + L ++ G+G KLY++ + T ++DLK+
Sbjct: 65 VIEEYITDGKSSVLEELQQEVPDGLVPLL-KLPGLGGKKIAKLYQELNVTNIEDLKDVCE 123
Query: 325 EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERL-------LQKAGEEVLPEVIILC---- 373
++ G K + I I Q ERL + + EE L ++ +
Sbjct: 124 AGKVSSLSGFGKKTEEKILAAI-ESAGSQPERLPIAYMLPVAEKIEEALSKMKGIKEYSR 182
Query: 374 GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY--VKKLKEMKFLREDLIF------STH 425
GS RR + + DLD +I D ++ K + +K+ + LIF S
Sbjct: 183 AGSLRRMRETVKDLDFIIAVEDVQAVKEQIMNLPDIKESSAAGDTKISLIFRYEWEVSVD 242
Query: 426 SEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRART 485
V P + YA L +TG+ N R+R +A+ +G ++ + G+ A G
Sbjct: 243 FRLVKPEE-YATALHHFTGSKDHNVRMRQIAKERGEKISEYGVENAETGEMA-------- 293
Query: 486 SLKFDTEKEVFDFLGFPWLEPHER 509
F +E+E FD G PW+ P R
Sbjct: 294 --TFRSEEEFFDHFGLPWIPPELR 315
>gi|222054249|ref|YP_002536611.1| PHP domain-containing protein [Geobacter daltonii FRC-32]
gi|221563538|gb|ACM19510.1| PHP domain protein [Geobacter daltonii FRC-32]
Length = 579
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 83/336 (24%), Positives = 141/336 (41%), Gaps = 60/336 (17%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIE--SADQVKGLPGIGKSM 266
N I IF ++ +I G D +Y +A +E L I+ S ++ +PGIGK
Sbjct: 3 NHEIARIFSEIADIQEFRGYDIFKIRAYRRAALNLEGLSQAIDNLSHKELLKIPGIGKDF 62
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNE 325
I+E + TGK+ E +++ + + L + G+GPA A+ LY+K G + +DDL+
Sbjct: 63 AAKIEEYLATGKIEAHEKLKEEVPLGMLELL-VIPGLGPAKAKLLYDKLGVKGMDDLERA 121
Query: 326 DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQ-----KAGEEVLPEVIIL-------- 372
+ RL IP+ + + E +L+ K G E P +L
Sbjct: 122 AA---EHRLA--------GAIPKIQSKTEENILKGIEMVKRGRERFPLGRVLPLADSLVD 170
Query: 373 ------C------GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY--VKKLKEMKFLRE 418
C GS RR K + D+D+V D + + V +L R
Sbjct: 171 SLRKQGCVERIELAGSIRRWKETVKDIDIVATASDPAALMIAFTTLPQVTRLLLKGPTRS 230
Query: 419 DLIFSTHSE---EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS 475
++ + + V R + L TG+ N RLR +A +G ++++ G+F S
Sbjct: 231 SVLVTDGIQVDLRVVERGSFGAALAYLTGSKNHNVRLRDMAVRQGLKINEYGIFRTEDDS 290
Query: 476 --GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
GG + E++V+ +G P++ P R
Sbjct: 291 RIGGAE------------EEDVYRVVGLPFIPPELR 314
>gi|224476250|ref|YP_002633856.1| hypothetical protein Sca_0761 [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222420857|emb|CAL27671.1| DNA polymerase family X protein [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 574
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 84/326 (25%), Positives = 138/326 (42%), Gaps = 49/326 (15%)
Query: 211 KNITEIFGKLINIYRALGEDRRSFSYY-KAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
K++ + K+ GE+ S Y KA +E ++ D V L GIGK + +
Sbjct: 8 KDVVRLLEKIATYMELKGENAFKVSAYRKAAQSLETDERTLDEIDDVTELKGIGKGVGEV 67
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLK----- 323
I E ++TG+ LE EK+ + L ++ G+G KLY E G + L+
Sbjct: 68 INEYLSTGQSETLEALEKEVPEGLVPLL-KIQGLGSKKIAKLYKELGITNKETLQKACEN 126
Query: 324 NEDSL-------THSQRL-GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCG- 374
NE S T L G+K + KT P + LL K E+ + + G
Sbjct: 127 NEVSALSGFGKKTEENILAGVKALSERKTHFPIN-------LLIKLNNEIEEYLTTIEGI 179
Query: 375 ------GSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKF----LREDLIFST 424
GS+RR K DLD +I ++ + L + K+K++ + ++ F
Sbjct: 180 DKFHVAGSFRRVKEMSKDLDYIISSTQPENVQKALLEIPHKVKDVAVGLTKVSVEVEFDD 239
Query: 425 HSEEVYPRDI----YAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQG 480
E+ R I Y L +TG+ N R+R LA+ + ++ + G+ A
Sbjct: 240 EVIEIDFRIIEPAAYYHTLQHFTGSKDHNIRIRQLAKERDEKVSEYGIEQAD-------- 291
Query: 481 VRARTSLKFDTEKEVFDFLGFPWLEP 506
T L+FD+E +++ G PW+ P
Sbjct: 292 ---GTLLQFDSEAAIYEHFGRPWIAP 314
>gi|126179709|ref|YP_001047674.1| phosphotransferase domain-containing protein [Methanoculleus
marisnigri JR1]
gi|125862503|gb|ABN57692.1| PHP C-terminal domain protein [Methanoculleus marisnigri JR1]
Length = 576
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 76/322 (23%), Positives = 131/322 (40%), Gaps = 33/322 (10%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQ---VKGLPGIGKSM 266
N + I ++ ++ G + +Y +A IE LP + + + +PG+GK +
Sbjct: 9 NIEVATILHEVADLLELKGVRFKPQAYRRAALAIETLPENVADVAREGDLDEIPGVGKGI 68
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL-YEKGHRTLDDLKNE 325
I+EI+ TG L L ++E + + GIGP A L E G RT+DDL+ +
Sbjct: 69 AKKIREILETGSLGYLSSL-REELPEGVQHLTRLEGIGPKKAIALSRELGIRTVDDLEAK 127
Query: 326 DSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQK---AGEEVLPEVIILC------ 373
+ L G K +I + RLL + E+ + L
Sbjct: 128 ALAGRIRDLPGFGEKTEANILASVRASRTATERRLLGQILPVAREIERRLASLASVRQVS 187
Query: 374 -GGSYRRGKASCGDLDVVI--MHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE--- 427
GS RR K + GD+D++ P+ V+++ + ++ ST +
Sbjct: 188 LAGSIRRRKETIGDVDILATSTRPEEVMEVFATLPGVERVLVRGMTKTSVVLSTGIQVDL 247
Query: 428 EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSL 487
V + L +TG+ N LR LA ++ +RL++ GL G ++
Sbjct: 248 RVVEDGHFGAALQYFTGSKEHNITLRKLAIARNWRLNEYGLADLATGR----------TV 297
Query: 488 KFDTEKEVFDFLGFPWLEPHER 509
+ E ++ LG W+EP R
Sbjct: 298 AGEDEAGIYRALGLAWIEPELR 319
>gi|171319413|ref|ZP_02908520.1| PHP domain protein [Burkholderia ambifaria MEX-5]
gi|171095377|gb|EDT40354.1| PHP domain protein [Burkholderia ambifaria MEX-5]
Length = 592
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 78/334 (23%), Positives = 138/334 (41%), Gaps = 50/334 (14%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVI----EKLPFKIESADQVKGLPG 261
P N +F ++ ++ G + R +Y A I +P I + + +P
Sbjct: 2 PIHNAECAAVFAEIADMLEIQGANPFRVRAYRNAARTIADYGRDIPAMIANGGDLGQIPS 61
Query: 262 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLD 320
IG + ++EI TG +L+ + I +V G+G + L++ H +L+
Sbjct: 62 IGADLAAKLREIAATGT-CELQQTLRHALPGAIVELLDVPGLGAKRVKALHDALHVDSLE 120
Query: 321 DLKNEDSLTHSQRL---GLK----YFDDIKTRIPRH-------EVEQ-----MERLLQKA 361
L+ E H + L G K D I R+ R + Q +ERL Q A
Sbjct: 121 QLRAEAKSGHVRALPGFGAKTEAHLLDAIDERLQREPQRFLLPDAAQSLRPMLERLRQVA 180
Query: 362 G-EEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKS-HKGFLS--KYVKKLKEMKFLR 417
G E +P GS+RR + + GDLD+++ D + F+ + L K
Sbjct: 181 GVGEAVP------AGSFRRCRETVGDLDILVSARDPAAVADAFVGCGDVARVLANGKTRS 234
Query: 418 EDLIFSTHSEEVYPRDIYAFG--LIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS 475
++ + ++ D AFG L+ +TG+ N LR +A++ G ++++ G+F
Sbjct: 235 SVMLGNGLQVDLRVVDADAFGAALVYFTGSKAHNIALRRIAQAGGLKINEYGVF------ 288
Query: 476 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
R + TE V++ +G W+ P R
Sbjct: 289 ------RGDERIAGATEASVYEAIGLHWVPPELR 316
>gi|302389951|ref|YP_003825772.1| PHP domain-containing protein [Thermosediminibacter oceani DSM
16646]
gi|302200579|gb|ADL08149.1| PHP domain protein [Thermosediminibacter oceani DSM 16646]
Length = 572
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 75/325 (23%), Positives = 138/325 (42%), Gaps = 44/325 (13%)
Query: 213 ITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGL---PGIGKSMQD 268
++ IF + ++ GE+ +Y KA VI LP IE + L GIGK+++
Sbjct: 6 VSYIFSDIADMMEIKGENFFKIRAYRKASQVIANLPEDIEEIMKTSSLGSIEGIGKALEG 65
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL 328
I+EI+ TG E +KD + + ++ G+G + +Y+ + T D + +
Sbjct: 66 KIKEIIETGTCRHYEELKKDIPRGLVEML-KIPGLGAKRIKTIYDALNITTIDELEQAAK 124
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILC--------------- 373
+H L+ I + + ++ ++ L KAG+ +L + L
Sbjct: 125 SHK----LRGLPGIGVKTEQAILKGIQMLKGKAGKMLLSTALYLAEEIKDMLKFLPAVEK 180
Query: 374 ---GGSYRRGKASCGDLDVVI-MHPDRKSHKGFL-----SKYVKKLKEMKFLREDLIFST 424
GS RR K G++ +V+ + +GFL ++ V + + + DL
Sbjct: 181 VEEAGSLRRRKELIGNIYLVVSSQSPAEVLEGFLDYPRITEVVARDTDKTSVVLDLGVQV 240
Query: 425 HSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRAR 484
V PR +A L +TGN+ N +L+ +A ++G +++ G+F G
Sbjct: 241 DLRVVEPRSFWA-ALHHYTGNEDHNVKLKEIARTRGLDINENGVFKEKNNEVIYPG---- 295
Query: 485 TSLKFDTEKEVFDFLGFPWLEPHER 509
E+EV+ L P++ P R
Sbjct: 296 ------NEEEVYKLLDMPYIIPELR 314
>gi|365158084|ref|ZP_09354325.1| histidinol phosphate phosphatase HisJ family protein [Bacillus
smithii 7_3_47FAA]
gi|363621913|gb|EHL73095.1| histidinol phosphate phosphatase HisJ family protein [Bacillus
smithii 7_3_47FAA]
Length = 571
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 78/314 (24%), Positives = 125/314 (39%), Gaps = 38/314 (12%)
Query: 221 INIYRAL-GEDRRSFSYY-KAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGK 278
I IY L GE+ S + KA +EK + +PGIGK+ I+E + TG
Sbjct: 15 IAIYMELKGENSFKVSAFRKAAAALEKDERGLNEIKDFTSIPGIGKATSSVIEEFIETGT 74
Query: 279 LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNEDSLTHSQRL--- 334
S LE +++ I L ++ G+G KLY E G ++LK Q L
Sbjct: 75 SSVLEQLQQEVPKGLIPLL-QIPGLGGKKISKLYQELGITNAEELKAACEKGEVQNLPGF 133
Query: 335 ----------GLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASC 384
+K D R+P + ++ ++K + + GS RR +
Sbjct: 134 GKKTEEKILAAIKQVGDRPERLPIWHMLELCEHIEKNLANIDGILQFARAGSIRRLREMV 193
Query: 385 GDLDVVIMHPDRKSHKGFLSKYVKKLKEMK---------FLREDLIFSTHSEEVYPRDIY 435
DLD +I D + L ++ +KE+ L + S V P +
Sbjct: 194 KDLDFIIAAADPQKVADALI-HLPGIKEVTAAGKTKVSVVLEDSYGVSVDFRIVEPEQ-F 251
Query: 436 AFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEV 495
A L +TG+ N R+R LA+ +G R+ + G+ G + F TE++
Sbjct: 252 ATALHHFTGSKDHNVRMRQLAKQRGERISEYGIENKETGE----------IVTFSTEEDF 301
Query: 496 FDFLGFPWLEPHER 509
+ G PW+ P R
Sbjct: 302 YRHFGLPWIPPEIR 315
>gi|187926586|ref|YP_001892931.1| PHP domain-containing protein [Ralstonia pickettii 12J]
gi|241666097|ref|YP_002984456.1| PHP domain-containing protein [Ralstonia pickettii 12D]
gi|187728340|gb|ACD29504.1| PHP domain protein [Ralstonia pickettii 12J]
gi|240868124|gb|ACS65784.1| PHP domain protein [Ralstonia pickettii 12D]
Length = 582
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/327 (21%), Positives = 129/327 (39%), Gaps = 43/327 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSF---SYYKAIPVIEKLPFKIES----ADQVKGLPGI 262
N+ I IF ++ ++ E+ F +Y A +E + +++ + LPG+
Sbjct: 12 NQAIAAIFNEIADLLEI--EEANPFRVRAYRNAARTVEGMTEGVDAMLARGADLTALPGV 69
Query: 263 GKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL 322
G + ++EIV TG + L + + L +E G +LD+L
Sbjct: 70 GVDLAAKMREIVETGSCAMLTRVRTEVPAYVLQLLQLPGLGPRRARALQHELGITSLDEL 129
Query: 323 KNEDSLTHSQRL-GL------KYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCG- 374
+ + L G + + + R+ R + + K + L ++ G
Sbjct: 130 ARAAAAHRIRELHGFGARSEQRLLEALNARLTRDRRYGLA--IAKPCADALTHYLLASGL 187
Query: 375 -------GSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKF--LREDLIFSTH 425
GSYRRG+ + GDLD++I R L Y + + R ++
Sbjct: 188 VDQLVVAGSYRRGRDTVGDLDLLITGRKRAQIVEHLVHYNEVATRISAGPTRASVVLKNG 247
Query: 426 SE---EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVR 482
+ V D + L+ +TG+ N LR LA+++G ++++ G+F R
Sbjct: 248 MQVDLRVVRPDAFGAALVYFTGSKPHNIALRKLAQAQGLKINEYGVF------------R 295
Query: 483 ARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ + TE V+ +G PW+ P R
Sbjct: 296 GKERIAGQTEASVYSAVGLPWICPELR 322
>gi|448353174|ref|ZP_21541951.1| DNA-directed DNA polymerase [Natrialba hulunbeirensis JCM 10989]
gi|445640751|gb|ELY93837.1| DNA-directed DNA polymerase [Natrialba hulunbeirensis JCM 10989]
Length = 583
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/309 (25%), Positives = 140/309 (45%), Gaps = 43/309 (13%)
Query: 231 RRSFSYYKAIPVIEKLPFKIESADQ--VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKD 288
RR+ +A PV + ++ D+ + + G+G ++ I E V TG++ +LE + +
Sbjct: 31 RRAAENIRAHPV--PIGDRVADGDEEILDEIDGVGDAISAKIVEYVETGEIEELEELKAE 88
Query: 289 EKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKNEDSLTHSQRL---GLKYFDDIKT 344
+ I+ + G+GP TA KLY E G TLDDL++ Q + G K ++I+
Sbjct: 89 LPI-DIADITRIEGVGPKTAGKLYRELGIETLDDLEDAAEAGEIQAVKGFGPKTEENIRD 147
Query: 345 RIPRHEVEQMERLLQKA---GEEVLP-----EVIILC--GGSYRRGKASCGDLDVVIMHP 394
I +LL +A ++VL +V+ C GS RR + + GD+DV++
Sbjct: 148 NIEFAREVGQRQLLGEARPLADDVLAFLESLDVVERCEVAGSIRRWRETIGDVDVLVATN 207
Query: 395 DRKSHKGFLSKYV--------------KKLKEMKFLREDLIFSTHSEEVYPRDIYAFGLI 440
+ ++ + ++V K + R DL V D + L
Sbjct: 208 ENET---VIEQFVGWDSVDSEIESGPAKASVRIGESRVDL-------RVVVPDEFGSALQ 257
Query: 441 AWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLG 500
+TG+ N RLR A + ++++ G+F + G +G R + +TE +++ LG
Sbjct: 258 YFTGSKDHNVRLRNYAIDRDLKVNEYGVFDVSDLEDGDEGQRVGERIAGETEGGMYNALG 317
Query: 501 FPWLEPHER 509
PW+ P R
Sbjct: 318 LPWIPPELR 326
>gi|402569140|ref|YP_006618484.1| PHP domain-containing protein [Burkholderia cepacia GG4]
gi|402250337|gb|AFQ50790.1| PHP domain protein [Burkholderia cepacia GG4]
Length = 584
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/333 (20%), Positives = 130/333 (39%), Gaps = 48/333 (14%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVI----EKLPFKIESADQVKGLPG 261
P N +F ++ ++ G + R +Y A I +P I S +P
Sbjct: 2 PIHNAECAAVFAEIADMLEIQGANPFRVRAYRNAARTIADYGRDIPAMIASGGDPGQIPS 61
Query: 262 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLD 320
IG + ++EI TG +L+ + I +V G+G + L++ H +L+
Sbjct: 62 IGTDLASKLREIAATGT-CELQQTLRHALPGAIVELLDVPGLGAKRVKALHDALHVDSLE 120
Query: 321 DLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEE-VLPEVI--------- 370
L+ E H ++ R H ++ ++ LQ+ + +LP+
Sbjct: 121 QLRAEAKSGH-----VRALPGFGARTEAHLLDAIDDRLQREPQRFLLPDAARSLLPLLER 175
Query: 371 ---------ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKY--VKKLKEMKFLRED 419
+ GS+RR + + GDLD+++ D + Y V ++ R
Sbjct: 176 LREVAGVGEAVPAGSFRRCRETVGDLDILVTAKDPAAVADAFVAYDEVARVLANGKTRSS 235
Query: 420 LIFSTHSE---EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSG 476
++ + V D + L+ +TG+ N LR +A++ G ++++ G+F
Sbjct: 236 VVLGNGLQVDLRVVDADAFGAALVYFTGSKAHNITLRRIAQAGGLKINEYGVF------- 288
Query: 477 GKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
R + TE V++ +G W+ P R
Sbjct: 289 -----RGDERIAGATEASVYEAIGLHWVPPELR 316
>gi|448385519|ref|ZP_21564025.1| PHP domain protein [Haloterrigena thermotolerans DSM 11522]
gi|445657014|gb|ELZ09846.1| PHP domain protein [Haloterrigena thermotolerans DSM 11522]
Length = 583
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 80/335 (23%), Positives = 136/335 (40%), Gaps = 45/335 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQV--------KGLPG 261
N I F + ++ A + + +Y +A + P I AD+V + + G
Sbjct: 4 NAEIAARFEEFADLLEADDVEYKPRAYRRAAENVRAHPSPI--ADRVAAGDREVLENIDG 61
Query: 262 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY-EKGHRTLD 320
+G ++ I E V TG + +L + + I+ + G+GP TA KLY E G TLD
Sbjct: 62 VGDAISAKIVEYVETGGIEELAELRAELPI-DIADITRIEGVGPKTAGKLYRELGVETLD 120
Query: 321 DLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQME-----------RLLQKA---GEEVL 366
DL++ Q D+K P+ E +E +LL +A ++VL
Sbjct: 121 DLEDAAEAGEIQ--------DVKGFGPKTEANILENLEFARTVGQRQLLGEARPLADDVL 172
Query: 367 P-----EVIILC--GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLRED 419
E + C GS RR + + GD+DV+ D ++ + E++ E
Sbjct: 173 AYLEGLEAVERCEVAGSIRRWRETIGDVDVLAATEDGEAVVEQFVSWESVDDEIESGPEK 232
Query: 420 LIFSTHSEEVYPRDI----YAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS 475
V R + + L +TG+ N LR A +G +L++ G F +
Sbjct: 233 ASVRVGESRVDLRVVVPAEFGSALQYFTGSKDHNVALRNYAIDRGMKLNEYGAFDVSGVE 292
Query: 476 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
+ R + +TE +++ LG W+ P R
Sbjct: 293 DHEADQRIGDRIAGETEAGMYEALGLDWIPPELRT 327
>gi|20067723|emb|CAD29102.1| chimeric DNA-directed DNA polymerase xf5-5c [synthetic construct]
Length = 202
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 99/196 (50%), Gaps = 29/196 (14%)
Query: 336 LKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVI-ILCG-GSYRRGKASCGDLDVVIMH 393
L+ +D + RIPR E+ QM+ ++ +++ PE I +CG GS RR + D+D++I+
Sbjct: 14 LRSREDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSGSLRREEKMLNDVDLLIIV 73
Query: 394 PDRKSHKGFLSKYVKKLK---------EMKFLREDLIFSTHSEEVYP------RDIYA-- 436
P++K K L K + E KF+ + S + E YP R I A
Sbjct: 74 PEKKLLKHVLPNIRIKGRFITDTLSKGETKFMGVCQLPSENDENEYPHRRIDIRLIPAEE 133
Query: 437 --FGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKE 494
+ + +TG ++ +R+ A KG+ +++ + P G GV A L D+E++
Sbjct: 134 KPYAIFHFTGP--VSYLIRIRAALKGFTINEYTIRPL-----GVTGV-AGEPLPVDSEQD 185
Query: 495 VFDFLGFPWLEPHERN 510
+FD++ + + EP +R+
Sbjct: 186 IFDYIQWRYREPKDRS 201
>gi|169845525|ref|XP_001829482.1| hypothetical protein CC1G_00661 [Coprinopsis cinerea okayama7#130]
gi|116509547|gb|EAU92442.1| hypothetical protein CC1G_00661 [Coprinopsis cinerea okayama7#130]
Length = 444
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 81/170 (47%), Gaps = 11/170 (6%)
Query: 234 FSYYKAIPVIEKLPFKIESAD-QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDE--- 289
++ AI VI +L I+S D QV + GIG +++ I L+ E+ + E
Sbjct: 61 LAFSNAINVISQLQQPIKSGDDQVLEMKGIGIGIKNRINTYFIQKSLASSENSVERENAL 120
Query: 290 KVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS----LTHSQRLGLKYFDDIKTR 345
K R I V GIG A+ L E G L L + L+ Q +GLKY + ++
Sbjct: 121 KKRAILDLQRVPGIGAVKAKALVEGGCTGLASLIASEEFHSLLSAQQIIGLKYMEHLEKP 180
Query: 346 IPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
R +VE + L KA E+I + G YRRG + ++++++HPD
Sbjct: 181 ASRDQVESVLNLC-KANLSSRYEIIPV--GEYRRGLSESSTIEMLVLHPD 227
>gi|448666862|ref|ZP_21685507.1| DNA polymerase IV [Haloarcula amylolytica JCM 13557]
gi|445771993|gb|EMA23049.1| DNA polymerase IV [Haloarcula amylolytica JCM 13557]
Length = 578
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 76/332 (22%), Positives = 131/332 (39%), Gaps = 44/332 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIES-----ADQVKGLPGIGK 264
N I + + ++ A G + + +Y +A I P IE D V + G+G
Sbjct: 4 NDEIATLLEEFADLLDAKGVEYKPRAYRRAAENIRDFPGAIEGLATEGEDSVGEIDGVGD 63
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 323
++ + E V TG++ +L + V +L V G+GP + LYE G TLD+L+
Sbjct: 64 AISSKVVEYVNTGEIEELTELRAELPVEMDALTA-VEGVGPKSVGSLYEALGITTLDELE 122
Query: 324 NEDSLTHSQRL---GLKYFDDIKTRIPRHEVEQMERLLQKA------------GEEVLPE 368
Q + G K +I + LL +A G + + E
Sbjct: 123 AAAEAGEIQEVSGFGAKTEQNILDNLDFAREAHERSLLGEARPYGDRIRSFMAGGDAVAE 182
Query: 369 VIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE 428
+ GGS RR + + GD+DV++ D ++ V++ + L +
Sbjct: 183 CAL--GGSIRRWRPTIGDVDVLVGSTDPEA-------VVERFTDWDGLDRVIESGETKAS 233
Query: 429 VYPRDI-----------YAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGG 477
Y D+ + L +TG+ N +R A + ++++ G+F
Sbjct: 234 AYADDVRVDLRIVDPSEFGAALQYFTGSKDHNVAVRNRAIERDLKVNEYGVFDVEGVE-- 291
Query: 478 KQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
G RA + +TE V+D LG W+ P R
Sbjct: 292 DDGQRAGELVASETEDAVYDALGMDWVPPELR 323
>gi|367007543|ref|XP_003688501.1| hypothetical protein TPHA_0O00980 [Tetrapisispora phaffii CBS 4417]
gi|357526810|emb|CCE66067.1| hypothetical protein TPHA_0O00980 [Tetrapisispora phaffii CBS 4417]
Length = 565
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 98/240 (40%), Gaps = 18/240 (7%)
Query: 228 GEDRRSFSYYKAIPVIEKLPFKIESADQV-KGLPGIGKSMQDHIQEIVTTGKLSKLEHFE 286
GE R+ SY A I K F I+S Q K + IG S+ I ++ G L L
Sbjct: 203 GEKFRARSYQLAADSILKAQFAIKSGHQAQKNMMHIGPSISRKIDILLKEGTLPGLS--V 260
Query: 287 KDEKVRTISLFGEVWGIGPATAQKL----YEKGHRTLDDLKNEDSLTHSQRLGLKYFDDI 342
K EK I+ F IG A+K + L+ + T G+ Y++D
Sbjct: 261 KSEKDDNIAYFMGCHNIGIGLAKKWELLKIKTFKEALEKQPTDFQTTWPTLFGISYYEDW 320
Query: 343 KTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGF 402
I R E E+ + +Q + + + GSYRRG +CGD+D++ F
Sbjct: 321 SRPIMREECEEHLKTVQDELRLIDKDCKVELQGSYRRGAKTCGDIDLL-----------F 369
Query: 403 LSKYVKKLKEMKFLREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYR 462
+ + ++ + EDL S + + + IA +D +N R ++ + YR
Sbjct: 370 YKEGCDDIAQLGKVIEDLAISLYERNYVQCFLLSSSKIANIFDDKINERYKVAGIERKYR 429
>gi|448391554|ref|ZP_21566700.1| DNA-directed DNA polymerase [Haloterrigena salina JCM 13891]
gi|445665875|gb|ELZ18550.1| DNA-directed DNA polymerase [Haloterrigena salina JCM 13891]
Length = 583
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 76/299 (25%), Positives = 134/299 (44%), Gaps = 23/299 (7%)
Query: 231 RRSFSYYKAIPVIEKLPFKIESADQ--VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKD 288
RR+ A PV + ++E D+ ++ + G+G ++ + E V TG++ +LE +
Sbjct: 31 RRAAENIAAHPV--PIADRVEDGDEEILEEIDGVGDAIASKVIEYVETGEIEELEELRAE 88
Query: 289 EKVRTISLFGEVWGIGPATAQKLY-EKGHRTLDDLKN---EDSLTHSQRLGLKYFDDIKT 344
+ IS + G+GP TA KLY E G +TLDDL+ + + + G K +I+
Sbjct: 89 LPI-DISDITRIEGVGPKTAGKLYRELGIQTLDDLEEAAENEEIQEVKGFGPKTEQNIRE 147
Query: 345 RIPRHEVEQMERLLQKA---GEEVLP-----EVIILC--GGSYRRGKASCGDLDVVIMHP 394
I +LL +A ++VL E + C GS RR + + GD+D ++
Sbjct: 148 NIDFAREVGQRQLLGEARPLADDVLDFLEGLEAVERCEVAGSIRRWRETIGDVDALVATE 207
Query: 395 DRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEVYPRDI----YAFGLIAWTGNDVLNR 450
D ++ + E++ E V R + + L +TG+ N
Sbjct: 208 DGEAVVEAFVDWDSVDSEIESGPEKASIRVGEIRVDLRVVVPEEFGSALQYFTGSKDHNV 267
Query: 451 RLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
LR A +G +L++ G F + + G R + +TE+ +++ LG PW+ P R
Sbjct: 268 TLRNYAIDRGMKLNEYGAFDVSDVEDHEAGQRVGERVAGETEEGMYEALGLPWIPPELR 326
>gi|221196590|ref|ZP_03569637.1| DNA polymerase IV [Burkholderia multivorans CGD2M]
gi|221203259|ref|ZP_03576278.1| DNA polymerase IV [Burkholderia multivorans CGD2]
gi|221177193|gb|EEE09621.1| DNA polymerase IV [Burkholderia multivorans CGD2]
gi|221183144|gb|EEE15544.1| DNA polymerase IV [Burkholderia multivorans CGD2M]
Length = 588
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/327 (21%), Positives = 135/327 (41%), Gaps = 42/327 (12%)
Query: 210 NKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVI----EKLPFKIESADQVKGLPGIGK 264
N +F ++ ++ G + R +Y A I +P + ++ +P IG
Sbjct: 5 NAECAAVFAEIADMLEIQGANPFRVRAYRNAARTIADYGRDIPSMLADGGELVRIPSIGP 64
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLDDLK 323
+ ++EI TG + + + L +V G+G + L++ TL+ L+
Sbjct: 65 DLASKLREIAQTGTCELQQTLRRALPGAIVQLL-DVPGLGAKRVKALHDALRIETLEQLR 123
Query: 324 NEDSLTHSQRLG----------LKYFDDIKTRIPRH-----EVEQMERLLQKAGEEVLPE 368
E H + L L D+ R PR + + LL++ +P
Sbjct: 124 VETKNGHVRALPGFGAKTEAQLLDALDERLRRTPRRCLLPVATDVLAPLLERL--RAVPG 181
Query: 369 VI-ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSK--YVKKLKEMKFLREDLIFSTH 425
VI + GS RR + + GDLD+++ D + ++ V+++ R ++ +
Sbjct: 182 VIEAVAAGSVRRRRETVGDLDILVSARDAAAVADAFTRGDAVERVLAKGKTRSSIVLACG 241
Query: 426 SE-EVYPRDIYAFG--LIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVR 482
+ ++ D AFG L+ +TG+ N LR +A++ G ++++ G+F R
Sbjct: 242 LQVDLRVVDAEAFGAALVYFTGSKAHNIALRRIAQAAGLKINEYGVF------------R 289
Query: 483 ARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ TE V+D +G W+ P R
Sbjct: 290 GEERIAGATEASVYDAIGLQWVPPELR 316
>gi|448309428|ref|ZP_21499289.1| DNA-directed DNA polymerase [Natronorubrum bangense JCM 10635]
gi|445590733|gb|ELY44946.1| DNA-directed DNA polymerase [Natronorubrum bangense JCM 10635]
Length = 583
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 76/322 (23%), Positives = 129/322 (40%), Gaps = 69/322 (21%)
Query: 231 RRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEK 290
RR+ +A PV P + D ++ + G+G ++ I E V TG + +LE +
Sbjct: 31 RRAAENIRAHPVPISDPVASGNEDVLEEIDGVGDAISAKIVEYVETGTIEELEELRAELP 90
Query: 291 VRTISLFGEVWGIGPATAQKLYEK------------------------GHRTLDDLKNED 326
+ I+ + G+GP TA KLY + G +T +++ D
Sbjct: 91 I-DIADITRIEGVGPKTAGKLYRELGVESLDALEAAAEAGDVQEIKGFGPKTEQNIR--D 147
Query: 327 SLTHSQRLGLKYF--------DDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYR 378
+L ++++G +Y DD+ + +E +ER GS R
Sbjct: 148 NLEFARQIGQRYLLGEGRPLADDVLAFL--EGLEAVERCE--------------VAGSIR 191
Query: 379 RGKASCGDLDV----------VIMHPDRKSHKGFLSKYVKKLK-EMKFLREDLIFSTHSE 427
R + + GD+DV V D +S G + +K + +R DL E
Sbjct: 192 RWRETIGDVDVLAATDAGEDVVEAFVDWESVDGEIESGPEKASVRVGEIRVDLRVVVPEE 251
Query: 428 EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSL 487
+ L +TG+ N RLR A +G +L++ G F + G+R +
Sbjct: 252 -------FGSALQYFTGSKDHNVRLRNYAIDRGMKLNEYGAFDVSEIDAPDAGLRVGDRV 304
Query: 488 KFDTEKEVFDFLGFPWLEPHER 509
DTE +++ LG PW+ P R
Sbjct: 305 AGDTEAGMYEALGLPWIPPELR 326
>gi|383766497|ref|YP_005445478.1| putative DNA polymerase/3'-5' exonuclease [Phycisphaera mikurensis
NBRC 102666]
gi|381386765|dbj|BAM03581.1| putative DNA polymerase/3'-5' exonuclease [Phycisphaera mikurensis
NBRC 102666]
Length = 597
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/341 (23%), Positives = 129/341 (37%), Gaps = 49/341 (14%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEKLPFKIES--ADQVKGLPGIG 263
P N ++T +F + + LG + + ++ KA V+E L S ++ LPG+G
Sbjct: 2 PSTNASLTAVFEDMARLTEVLGGNGFKVNAFVKAARVVEALERDAASFSRSELVALPGVG 61
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLDDL 322
D I E V +G ++ E ++ ++L G + GIGP +A + + + ++DDL
Sbjct: 62 TGTADRILEFVESGAVADHEDLKERVPAGVVALMG-ISGIGPKSAARFWHEAEVESIDDL 120
Query: 323 K---NEDSLTHSQRLGLKYFDDIKTRIP-------RHEVEQMERLLQKAGEEVLPEVI-- 370
K ++ L + G K D I + RH L E V
Sbjct: 121 KAAIDDGRLAALKGFGQKKIDGIAKSLAFAERFGDRHRRGVAAALAGAVAEAVAGVEGVR 180
Query: 371 -ILCGGSYRRGKASCGDLDVVIM---------HPDRKSHKGFLSKYVKKLKEMKFLREDL 420
+ GS RRG + GD+DV+ P G + ++++ + E L
Sbjct: 181 RVEAAGSLRRGAETIGDVDVLAAVPGPGPSAEDPTPAPDPGVTAAVFDAVEKLDGVEEVL 240
Query: 421 IFSTHSEEV------------YPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGL 468
+ V P + L +TG+ N LR A +G L + L
Sbjct: 241 VRGDTKLSVRFGAGLQADVRAVPAACFGAALAYFTGSKEHNVALRERAGKRGMSLSEYAL 300
Query: 469 FPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
T GG A TE E+ LG ++ P R
Sbjct: 301 ---TDKRGGAVVASA-------TEAEIHGALGLAFVPPELR 331
>gi|115358392|ref|YP_775530.1| phosphotransferase domain-containing protein [Burkholderia
ambifaria AMMD]
gi|115283680|gb|ABI89196.1| PHP C-terminal domain protein [Burkholderia ambifaria AMMD]
Length = 592
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 78/334 (23%), Positives = 138/334 (41%), Gaps = 50/334 (14%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDR-RSFSYYKAIPVIEK----LPFKIESADQVKGLPG 261
P N +F ++ ++ G + R +Y A I + +P I + + +P
Sbjct: 2 PIHNAECAAVFAEIADMLEIQGANPFRVRAYRNAARTIAEYGRDIPAMIANGSDLGQIPS 61
Query: 262 IGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLD 320
IG + ++EI TG +L+ + I +V G+G + L++ H +L+
Sbjct: 62 IGADLAAKLREIAATGT-CELQQTLRHALPGAIVELLDVPGLGAKRVKALHDALHVDSLE 120
Query: 321 DLKNEDSLTHSQRL---GLK----YFDDIKTRIPRH-------EVEQ-----MERLLQKA 361
L+ E H + L G K D I R+ R + Q +ERL Q A
Sbjct: 121 QLRAEAKSGHVRALPGFGAKTEAHLLDAIDERLQREPQRFLLPDAAQSLRPMLERLRQVA 180
Query: 362 G-EEVLPEVIILCGGSYRRGKASCGDLDVVI-MHPDRKSHKGFLS--KYVKKLKEMKFLR 417
G E +P GS+RR + + GDLD+++ F+S + L K
Sbjct: 181 GVGEAVP------AGSFRRCRETVGDLDILVSAQDAAAVADAFVSCGDVARVLANGKTRS 234
Query: 418 EDLIFSTHSEEVYPRDIYAFG--LIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS 475
++ + ++ D AFG L+ +TG+ N LR +A++ G ++++ G+F
Sbjct: 235 SVMLGNGLQVDLRVVDADAFGAALVYFTGSKAHNIALRRIAQAGGLKINEYGVF------ 288
Query: 476 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
R + TE V++ +G W+ P R
Sbjct: 289 ------RGDERIAGATEASVYEAIGLHWVPPELR 316
>gi|448604353|ref|ZP_21657605.1| DNA polymerase X [Haloferax sulfurifontis ATCC BAA-897]
gi|445744513|gb|ELZ95989.1| DNA polymerase X [Haloferax sulfurifontis ATCC BAA-897]
Length = 582
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 134/334 (40%), Gaps = 46/334 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIE-----SADQVKGLPGIGK 264
N I + + ++ A + SY +A + + P +E D V+ + +G
Sbjct: 4 NDEIATLLEEFADLLEAKDVAYKPSSYRRAAENVREHPKPVEELAEEGEDAVQEIDRVGD 63
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLK 323
++ I E V TG++ +L ++ V L V G+GP T KLYE G LDDL+
Sbjct: 64 AIASKIVEYVETGRIEELAELREELPVDMAGLT-SVEGVGPKTVGKLYEALGVADLDDLE 122
Query: 324 ---NEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCG------ 374
E + + G K +I I LL +A V +++ G
Sbjct: 123 AAAREGKIQEVKGFGAKTEANILDGIEFAREATGRELLGRA-RPVADDLLAHLGDHDAVG 181
Query: 375 -----GSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYV--------------KKLKEMKF 415
GS RR + + GD+DV+ D + + +++ K +
Sbjct: 182 RVEPAGSMRRWRETVGDIDVLAESADAAA---VIDRFLAWDLVGDTIEAGDQKASVRVNG 238
Query: 416 LREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS 475
+R DL +E Y L +TG+ N LR +A +G ++++ G+F +
Sbjct: 239 MRVDLRVVDPAE-------YGAALQYFTGSKDHNVHLRNIAIDRGLKMNEYGMFDISDVE 291
Query: 476 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
G RA T + DTE+ ++ L P + P R
Sbjct: 292 DPDDGPRAGTRVAGDTEESMYAALDLPLVPPEMR 325
>gi|384249488|gb|EIE22969.1| Nucleotidyltransferase [Coccomyxa subellipsoidea C-169]
Length = 549
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 89/395 (22%), Positives = 139/395 (35%), Gaps = 126/395 (31%)
Query: 230 DRRSFSYYKAIPVIEKLPFKIESA----DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF 285
+ +S + +A + FKIE D LP +G + I EI TG +LE
Sbjct: 165 NHKSLGFARAASAVRACAFKIEPGTRPEDLKNQLPFVGGARAVQICEIAATGTTLELEQH 224
Query: 286 EKDEKVRTIS-------------------LFGEVWGIGPATAQKLYEKGHRTLDDLKNE- 325
+V + F ++ G+G ATA++ Y+ G RTLDD+
Sbjct: 225 RAGVQVYSSPDANGQRKMYEHAVGSVARRQFKKLPGVGSATAKRWYDLGLRTLDDVAEAA 284
Query: 326 -----------DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPE--VIIL 372
LT +Q + + D+ +V++M R + A V V+ +
Sbjct: 285 KPGGPLAIGGVAPLTVAQAFSVAHRGDLLETCTEDDVDEMRREVLDALTTVAGNGWVLQI 344
Query: 373 CGGSYRRGKASCGDLDVVIMHPDR---------------------KSHKGFLSKYVKKLK 411
GG+ RG AS D D V+ + + KS L++ +
Sbjct: 345 VGGAA-RGLAS-HDADFVVSNKETSTEGIGNLLYDELCARGRLFPKSEAMCLTQSSRMPT 402
Query: 412 EMKFLRE---------------------DLIFSTHSEE----------VYPRDIYAFGLI 440
++ +RE D IF + E + P A ++
Sbjct: 403 HLQSMREEVSRKQTASFFTLHNLSADRHDHIFGNYLTEAGKVRRLDVIIAPPQERAACIL 462
Query: 441 AWTGNDVLNRRLRLLAESKGYRL-------------------------DDTGLFPATYGS 475
WTG+ R LR A +G L D T +P +GS
Sbjct: 463 GWTGSRQYLRFLRQYAADRGMHLNSHRIMRRVGNTAIVVPDEGPPLDRDGTPRWPPGWGS 522
Query: 476 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510
G RT +TE ++F+ LG P+ PHERN
Sbjct: 523 G-------RT---VETEADIFELLGLPYRPPHERN 547
>gi|415986835|ref|ZP_11559699.1| DNA polymerase X family protein, partial [Acidithiobacillus sp.
GGI-221]
gi|339834872|gb|EGQ62600.1| DNA polymerase X family protein [Acidithiobacillus sp. GGI-221]
Length = 218
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 92/215 (42%), Gaps = 44/215 (20%)
Query: 207 PDLNKNITEIFGKLINIYRALGEDRRSF---SYYKAIPVI----EKLPFKIESADQVKGL 259
P LN +I F ++ ++ ED F +Y A ++ L +E+ + + L
Sbjct: 2 PVLNPDIARAFDEIADLLEI--EDANPFRVRAYRTAARLVLGLSSDLKTMVEAGEDLTEL 59
Query: 260 PGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTL 319
PGIG+ + I EIVTTG S LE EK L +V G+GP + L+ +
Sbjct: 60 PGIGEDLAKKIIEIVTTGHCSFLEKLEKQTPPALTELL-KVPGLGPKRVKALWHEL---- 114
Query: 320 DDLKNEDSLTHSQRLG----------------LKYFDDIKTRIPRHEV-------EQMER 356
D++ D LT + R G L+ +PR + + R
Sbjct: 115 -DVETVDQLTRAAREGRIRSIPGFGEKTEARILEALQAQIAAVPRFPIAVAAPYAAALVR 173
Query: 357 LLQKAGEEVLPEV-IILCGGSYRRGKASCGDLDVV 390
LQ +P V ++ GS+RRG+ + GDLD++
Sbjct: 174 YLQN-----VPGVRRVVVAGSFRRGRDTVGDLDIL 203
>gi|414153032|ref|ZP_11409359.1| PHP C-terminal domain protein [Desulfotomaculum hydrothermale Lam5
= DSM 18033]
gi|411455414|emb|CCO07261.1| PHP C-terminal domain protein [Desulfotomaculum hydrothermale Lam5
= DSM 18033]
Length = 569
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 72/328 (21%), Positives = 142/328 (43%), Gaps = 45/328 (13%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYY----KAIPVIEKLPFKIESADQVKGLPGIGKS 265
N I IF +L ++ GED Y KA+ +E+ ++ + ++ +PGIGK+
Sbjct: 3 NFEIAWIFSELADLLEIKGEDFFKVRAYRRAAKALARLEQPVQELYRSGKLSQVPGIGKA 62
Query: 266 MQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY------------- 312
+ I+EI+ TGKL+K + K+ +++ ++ GIG A+ L+
Sbjct: 63 IAAKIKEIIETGKLAKHQELLKEIPAGVLAV-RQLPGIGAGRARALFKELAITDLTELEQ 121
Query: 313 ---EKGHRTLDDL--KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
E+ R+L K E + H + + I+ + R +++ ++ +LP
Sbjct: 122 AAKERKVRSLKGFSAKLESDILHGIEMMRNRQNSIRLSVARELAAELKEFIK-----LLP 176
Query: 368 EVIILC-GGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTH- 425
V + GS RR + + GDLD+V+ D + ++ Y + + ++ + ++ +T
Sbjct: 177 GVKAVSEAGSTRRWRDTVGDLDLVVAADDPATVLHAMAAYPRVKEVVRQESQRMVVNTWW 236
Query: 426 ----SEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGV 481
+V Y L TG +L+ +A+ +G L+ GLF
Sbjct: 237 GLAVDLQVADPAAYITTLHRNTGCKAHYAKLQEIAQQQGLHLNHRGLFN----------- 285
Query: 482 RARTSLKFDTEKEVFDFLGFPWLEPHER 509
+A L E+++++ L ++ P R
Sbjct: 286 QAGQHLPIQHEQDIYETLQMTYIPPELR 313
>gi|406993738|gb|EKE12843.1| hypothetical protein ACD_13C00134G0004 [uncultured bacterium]
Length = 571
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 79/321 (24%), Positives = 136/321 (42%), Gaps = 49/321 (15%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSF---SYYKAIPVIEKLPFKIESA---DQVKGLPGIG 263
N I E+ + Y+ +D+ F +Y +A +E +++ +++ +PGIG
Sbjct: 7 NLQIAELLRDVAASYQLRDKDKYKFQIIAYERAADAVEHASSELKDLWDDGKLEDVPGIG 66
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH--RTLDD 321
S+ +H+ E+ TG + KD L E+ GIG TA K+ + G+ +
Sbjct: 67 PSIAEHLGELFKTGHSKHFDSLMKDIPADAFKLM-ELPGIGIKTAMKMIKAGNPKEVREK 125
Query: 322 LKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQK-AGEEVLPEVIILCGGSYRRG 380
LK + ++ G ++ + HEV ME L + A V P GS RR
Sbjct: 126 LK---EVAEKEKKGKRHLLPYAATVA-HEV--MEYLSENPATMRVDP------LGSLRRQ 173
Query: 381 KASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMK------------FLREDLIFSTHSEE 428
++ GD+D+ + D + + +KY K K ++ ++ DL+
Sbjct: 174 ASTIGDIDIAVATNDPVAVIDYFTKYPKSQKMIEKGEHTASILLPGGIQVDLM------- 226
Query: 429 VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLK 488
P + Y L +TG+ N LR LA KG L + G+ + + Q K
Sbjct: 227 TQPIESYGSLLQHFTGSKHHNIALRELALKKGLSLSEYGIRKSQEPNSKIQ--------K 278
Query: 489 FDTEKEVFDFLGFPWLEPHER 509
F TE+E + +L ++EP R
Sbjct: 279 FKTEEEFYKYLRLDYIEPELR 299
>gi|406958539|gb|EKD86168.1| hypothetical protein ACD_37C00435G0003 [uncultured bacterium]
Length = 599
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 75/334 (22%), Positives = 140/334 (41%), Gaps = 47/334 (14%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSF---SYYKAIPVIEKLPFKIES---ADQVKGLPGIG 263
NK I ++F ++ Y E + F +Y A +E L +I+ +++ +PGIG
Sbjct: 16 NKEIAQLFRQVAASYSIKNEAKFRFQMLAYQNAADAVEGLTTQIKDLYKENKLDVIPGIG 75
Query: 264 KSMQDHIQEIVTTGKLSKLEHFEK--DEKVRTISLFGEVWGIGPATAQKLY--------E 313
++Q ++E+ TG K++HFE+ + T+ +F ++ GP A KL +
Sbjct: 76 ATIQGRLEELFKTG---KVKHFEQVMEGIPPTVFIFMQIPSFGPKKAFKLATHFKLNNPK 132
Query: 314 KGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIP--RHEVEQMERLLQKAGEEVLPEVII 371
L+ + + + + G K DI I R + ++L +V ++I
Sbjct: 133 TAIDELEKIAKKGEIASLEGFGEKSEADIIRAINEFREGKGKTTKMLLPYANDVAEQIIT 192
Query: 372 LCG-----------GSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVK--KLKEMKFLRE 418
GS RR K GD+D+ + P+ + + KY + ++ E
Sbjct: 193 YLKQSEFVKEAQVLGSLRRMKPLVGDIDIAVTSPNPEKVIEYFIKYPRTDRIIEKGPTTS 252
Query: 419 DLIFSTHSE---EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS 475
L+ S ++ V + + L +TG+ N LR A KG L + G+
Sbjct: 253 SLLTSGGNQVDLMVLSPNQWGSLLQHFTGSKDHNVHLREYAIKKGLSLSEKGI------- 305
Query: 476 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ ++ +F TE+E ++ +G W+ P R
Sbjct: 306 ---KNLKTEKMQEFKTEEEFYNAIGMSWIPPEMR 336
>gi|161520931|ref|YP_001584358.1| phosphotransferase domain-containing protein [Burkholderia
multivorans ATCC 17616]
gi|189352887|ref|YP_001948514.1| family X DNA polymerase [Burkholderia multivorans ATCC 17616]
gi|160344981|gb|ABX18066.1| PHP domain protein [Burkholderia multivorans ATCC 17616]
gi|189336909|dbj|BAG45978.1| family X DNA polymerase [Burkholderia multivorans ATCC 17616]
Length = 588
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/327 (19%), Positives = 130/327 (39%), Gaps = 42/327 (12%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVI-----EKLPFKIESADQVKGLPGIGK 264
N +F ++ ++ G + Y+ + +P + ++ +P IG
Sbjct: 5 NAECAAVFAEIADMLEIQGANPFRVRAYRNVARTIADYGHDIPSMLADGGELVRIPSIGP 64
Query: 265 SMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH-RTLDDLK 323
+ ++EI TG + + + L +V G+G + L++ TL+ L+
Sbjct: 65 DLASKLREIAQTGTCELQQTLRRALPGAIVQLL-DVPGLGAKRVKALHDALRIETLEQLR 123
Query: 324 NEDSLTHSQRLG----------LKYFDDIKTRIPRH-----EVEQMERLLQKAGEEVLPE 368
E H + L L D+ R PR + + LL++ +P
Sbjct: 124 VETKNGHVRALPGFGAKTEAQLLDALDERLRRTPRRCLLPVATDVLAPLLERL--HAVPG 181
Query: 369 VI-ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSK--YVKKLKEMKFLREDLIFSTH 425
VI + GS RR + + GDLD+++ D + ++ V+++ R ++ +
Sbjct: 182 VIEAVAAGSVRRRRETVGDLDILVSARDAAAVADAFTRGDAVERVLAKGKTRSSIVLACG 241
Query: 426 SE---EVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVR 482
+ V D + L+ +TG+ N LR +A++ G ++++ G+F R
Sbjct: 242 LQVDLRVVDADAFGAALVYFTGSKAHNIALRRIAQAAGLKINEYGVF------------R 289
Query: 483 ARTSLKFDTEKEVFDFLGFPWLEPHER 509
+ TE V+D +G W+ P R
Sbjct: 290 GEERIAGATEASVYDAIGLQWVPPELR 316
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.134 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,133,035,722
Number of Sequences: 23463169
Number of extensions: 344104391
Number of successful extensions: 1096016
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 897
Number of HSP's that attempted gapping in prelim test: 1091555
Number of HSP's gapped (non-prelim): 2561
length of query: 511
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 364
effective length of database: 8,910,109,524
effective search space: 3243279866736
effective search space used: 3243279866736
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 79 (35.0 bits)