Query 010406
Match_columns 511
No_of_seqs 338 out of 983
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 06:07:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010406.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010406hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ihm_A POL MU, DNA polymerase 100.0 1.2E-78 4.1E-83 630.0 30.7 295 207-511 14-360 (360)
2 2bcq_A DNA polymerase lambda; 100.0 1.6E-78 5.5E-83 623.4 28.4 307 202-511 5-335 (335)
3 1jms_A Terminal deoxynucleotid 100.0 4.2E-78 1.4E-82 629.4 31.6 295 207-511 33-381 (381)
4 2fmp_A DNA polymerase beta; nu 100.0 2.2E-75 7.5E-80 600.5 30.3 298 208-511 10-335 (335)
5 3b0x_A DNA polymerase beta fam 100.0 4E-60 1.4E-64 520.4 25.6 283 208-510 1-315 (575)
6 2w9m_A Polymerase X; SAXS, DNA 100.0 3E-57 1E-61 497.5 23.5 274 207-510 7-305 (578)
7 1jaj_A DNA polymerase beta-lik 100.0 3.6E-39 1.2E-43 300.8 -3.8 151 334-510 6-174 (174)
8 2dun_A POL MU, DNA polymerase 99.9 4.4E-26 1.5E-30 200.4 9.6 98 12-109 4-107 (133)
9 2coe_A Deoxynucleotidyltransfe 99.9 1.4E-23 4.7E-28 183.6 9.8 101 10-110 12-116 (120)
10 2jw5_A DNA polymerase lambda; 99.8 1.1E-21 3.7E-26 169.0 2.0 98 13-111 6-106 (106)
11 3pa6_A Microcephalin; BRCT dom 99.6 2.3E-15 7.9E-20 129.5 9.3 91 17-111 6-98 (107)
12 1wf6_A Similar to S.pombe -RAD 99.6 3.4E-15 1.2E-19 133.3 9.6 94 12-109 34-127 (132)
13 1vq8_Y 50S ribosomal protein L 99.5 5.8E-17 2E-21 158.4 -6.8 166 295-466 15-232 (241)
14 3ii6_X DNA ligase 4; XRCC4, NH 99.5 3.1E-14 1.1E-18 141.4 9.3 93 14-108 160-263 (263)
15 4id3_A DNA repair protein REV1 99.5 4.8E-14 1.7E-18 117.1 8.3 88 13-108 2-91 (92)
16 2ebw_A DNA repair protein REV1 99.4 1.9E-13 6.7E-18 114.9 8.6 91 11-109 5-96 (97)
17 3l3e_A DNA topoisomerase 2-bin 99.4 2.8E-13 9.7E-18 116.3 6.0 93 14-111 11-105 (107)
18 2d8m_A DNA-repair protein XRCC 99.4 1E-12 3.4E-17 116.7 8.6 96 11-112 15-110 (129)
19 2cou_A ECT2 protein; BRCT doma 99.3 6.3E-13 2.1E-17 114.7 3.9 87 17-109 11-97 (109)
20 3pc6_A DNA repair protein XRCC 99.3 1.1E-11 3.9E-16 105.7 9.1 90 16-109 5-95 (104)
21 3l46_A Protein ECT2; alternati 99.3 2.9E-12 1E-16 110.9 5.1 88 17-110 20-107 (112)
22 2ep8_A Pescadillo homolog 1; A 99.1 5.3E-11 1.8E-15 101.0 7.2 84 12-107 6-100 (100)
23 1z56_C DNA ligase IV; DNA repa 99.1 1.1E-11 3.8E-16 122.6 2.8 95 13-108 155-261 (264)
24 2nte_A BARD-1, BRCA1-associate 99.1 2.1E-10 7.3E-15 109.6 7.6 84 21-109 2-87 (210)
25 1t15_A Breast cancer type 1 su 99.0 2.3E-10 7.9E-15 109.1 6.5 84 21-109 4-92 (214)
26 2kp7_A Crossover junction endo 99.0 5.6E-10 1.9E-14 92.1 7.8 68 208-276 13-80 (87)
27 1l0b_A BRCA1; TANDEM-BRCT, thr 99.0 4.9E-10 1.7E-14 108.2 7.6 87 18-109 4-95 (229)
28 3ef0_A RNA polymerase II subun 98.9 1.3E-09 4.5E-14 113.1 7.5 89 17-108 281-371 (372)
29 3olc_X DNA topoisomerase 2-bin 98.9 3.2E-09 1.1E-13 107.2 8.3 89 16-110 197-286 (298)
30 3pc7_A DNA ligase 3; DNA repai 98.9 2.8E-09 9.6E-14 87.9 6.1 75 14-103 12-87 (88)
31 3ef1_A RNA polymerase II subun 98.8 5.1E-09 1.8E-13 110.3 6.8 88 17-108 351-441 (442)
32 1kzy_C Tumor suppressor P53-bi 98.8 1.1E-08 3.7E-13 101.2 8.7 96 11-109 8-136 (259)
33 3ii6_X DNA ligase 4; XRCC4, NH 98.8 1.1E-08 3.8E-13 101.3 8.0 93 12-109 4-96 (263)
34 2etx_A Mediator of DNA damage 98.8 1E-08 3.4E-13 98.1 7.3 83 18-109 9-91 (209)
35 3u3z_A Microcephalin; DNA repa 98.8 9.9E-09 3.4E-13 97.5 7.1 81 26-109 14-95 (199)
36 3sqd_A PAX-interacting protein 98.7 8.7E-09 3E-13 99.4 6.2 86 18-109 13-98 (219)
37 3al2_A DNA topoisomerase 2-bin 98.7 1.6E-08 5.4E-13 98.6 7.9 85 20-109 8-94 (235)
38 2vxb_A DNA repair protein RHP9 98.5 1.4E-07 4.7E-12 92.3 8.0 90 17-110 1-118 (241)
39 3olc_X DNA topoisomerase 2-bin 98.5 1.8E-07 6.1E-12 94.3 8.5 88 13-106 100-187 (298)
40 1l0b_A BRCA1; TANDEM-BRCT, thr 98.4 2.6E-07 8.9E-12 88.9 7.3 89 16-109 115-213 (229)
41 3l41_A BRCT-containing protein 98.3 2.1E-07 7.2E-12 89.8 4.2 81 20-109 7-87 (220)
42 1t15_A Breast cancer type 1 su 98.3 4E-07 1.4E-11 86.5 5.5 94 15-109 112-211 (214)
43 1z56_C DNA ligase IV; DNA repa 98.3 9.4E-08 3.2E-12 94.3 -0.5 89 16-109 3-101 (264)
44 1kzy_C Tumor suppressor P53-bi 98.2 1.4E-06 4.8E-11 86.0 7.1 88 16-106 153-249 (259)
45 3u3z_A Microcephalin; DNA repa 98.1 1.2E-06 4.1E-11 83.1 4.1 83 15-109 116-198 (199)
46 2vxb_A DNA repair protein RHP9 98.0 6E-06 2.1E-10 80.6 6.4 80 16-103 149-241 (241)
47 2etx_A Mediator of DNA damage 97.9 2.2E-05 7.6E-10 74.7 7.9 85 17-109 114-202 (209)
48 2k6g_A Replication factor C su 97.8 0.0001 3.5E-09 63.1 10.2 80 15-98 29-108 (109)
49 2nte_A BARD-1, BRCA1-associate 97.8 1.2E-05 4.1E-10 76.4 4.7 85 16-104 102-209 (210)
50 2edu_A Kinesin-like protein KI 97.7 2.7E-05 9.1E-10 65.4 4.7 57 252-322 38-95 (98)
51 2ebu_A Replication factor C su 97.6 0.0002 7E-09 61.5 8.9 79 15-97 19-97 (112)
52 2cok_A Poly [ADP-ribose] polym 97.6 0.00011 3.6E-09 63.4 7.1 85 16-105 8-104 (113)
53 1l7b_A DNA ligase; BRCT, autos 97.6 9.2E-05 3.1E-09 61.4 5.7 77 15-97 4-80 (92)
54 2duy_A Competence protein come 97.4 5E-05 1.7E-09 60.4 1.6 46 253-313 26-71 (75)
55 3al2_A DNA topoisomerase 2-bin 97.2 0.00032 1.1E-08 68.0 5.7 91 16-109 133-229 (235)
56 2l42_A DNA-binding protein RAP 97.2 0.00038 1.3E-08 57.6 5.1 84 16-111 9-97 (106)
57 3arc_U Photosystem II 12 kDa e 97.1 0.00049 1.7E-08 57.6 4.9 47 252-313 24-70 (97)
58 1s5l_U Photosystem II 12 kDa e 97.0 0.0007 2.4E-08 59.5 5.1 46 252-312 61-106 (134)
59 1x2i_A HEF helicase/nuclease; 96.7 0.0032 1.1E-07 49.2 6.5 51 254-313 14-64 (75)
60 1ixr_A Holliday junction DNA h 96.5 0.0016 5.5E-08 61.1 4.2 53 255-313 73-125 (191)
61 2i5h_A Hypothetical protein AF 96.5 0.0021 7.3E-08 60.1 4.5 46 249-305 126-172 (205)
62 1kft_A UVRC, excinuclease ABC 96.4 0.0027 9.3E-08 50.5 4.3 51 254-313 24-74 (78)
63 2ztd_A Holliday junction ATP-d 96.3 0.0031 1.1E-07 60.1 4.9 52 255-313 89-141 (212)
64 1z00_A DNA excision repair pro 96.3 0.005 1.7E-07 50.2 5.4 52 254-314 19-70 (89)
65 1cuk_A RUVA protein; DNA repai 96.3 0.0022 7.5E-08 60.8 3.4 53 255-313 74-126 (203)
66 2owo_A DNA ligase; protein-DNA 96.2 0.0078 2.7E-07 66.5 8.2 87 254-350 480-568 (671)
67 2duy_A Competence protein come 96.2 0.0028 9.5E-08 50.1 3.1 47 293-345 25-72 (75)
68 3sqd_A PAX-interacting protein 96.2 0.011 3.8E-07 56.5 7.9 85 16-108 120-218 (219)
69 2a1j_B DNA excision repair pro 96.1 0.0059 2E-07 50.1 5.0 51 254-313 32-82 (91)
70 1dgs_A DNA ligase; AMP complex 96.1 0.0053 1.8E-07 67.8 6.0 84 254-347 475-560 (667)
71 3arc_U Photosystem II 12 kDa e 96.1 0.0014 4.7E-08 54.8 0.8 48 293-346 24-72 (97)
72 2a1j_B DNA excision repair pro 95.6 0.0098 3.4E-07 48.7 4.0 52 290-342 27-80 (91)
73 3qbz_A DDK kinase regulatory s 95.4 0.01 3.6E-07 53.3 3.9 48 17-64 57-115 (160)
74 1s5l_U Photosystem II 12 kDa e 95.3 0.0057 2E-07 53.7 1.8 43 293-341 61-104 (134)
75 1z00_A DNA excision repair pro 95.2 0.015 5.2E-07 47.3 4.0 50 291-341 15-66 (89)
76 3bqs_A Uncharacterized protein 95.1 0.014 4.7E-07 48.4 3.4 31 296-326 5-35 (93)
77 3oq0_A DBF4, protein DNA52; DD 95.1 0.029 1E-06 50.0 5.7 47 18-64 20-77 (151)
78 1kft_A UVRC, excinuclease ABC 94.8 0.0072 2.5E-07 48.0 0.9 49 294-343 23-73 (78)
79 1x2i_A HEF helicase/nuclease; 94.7 0.014 4.9E-07 45.4 2.5 49 293-342 12-62 (75)
80 2bgw_A XPF endonuclease; hydro 94.7 0.029 1E-06 53.3 5.1 51 255-314 163-213 (219)
81 3oq4_A DBF4, protein DNA52; DD 94.6 0.056 1.9E-06 47.3 6.1 47 18-64 4-60 (134)
82 2i5h_A Hypothetical protein AF 94.1 0.023 7.8E-07 53.2 2.8 76 268-343 104-186 (205)
83 4b21_A Probable DNA-3-methylad 94.1 0.074 2.5E-06 51.2 6.6 62 254-316 107-171 (232)
84 2w9m_A Polymerase X; SAXS, DNA 94.1 0.033 1.1E-06 60.8 4.3 53 252-311 95-147 (578)
85 4glx_A DNA ligase; inhibitor, 93.9 0.057 1.9E-06 58.8 5.9 83 254-346 480-564 (586)
86 3mab_A Uncharacterized protein 93.8 0.044 1.5E-06 45.3 3.7 31 296-326 5-35 (93)
87 1vq8_Y 50S ribosomal protein L 93.7 0.012 4.1E-07 57.1 0.0 54 253-314 14-67 (241)
88 3s6i_A DNA-3-methyladenine gly 93.6 0.1 3.5E-06 50.1 6.5 55 261-315 102-159 (228)
89 3l41_A BRCT-containing protein 93.6 0.12 4.1E-06 49.3 6.9 84 16-100 111-206 (220)
90 2ztd_A Holliday junction ATP-d 93.5 0.019 6.4E-07 54.7 1.1 53 290-342 83-139 (212)
91 3b0x_A DNA polymerase beta fam 93.0 0.061 2.1E-06 58.6 4.2 55 252-312 91-145 (575)
92 1u9l_A Transcription elongatio 92.8 0.062 2.1E-06 42.0 2.9 51 293-343 4-56 (70)
93 2a1j_A DNA repair endonuclease 92.8 0.094 3.2E-06 40.0 3.9 30 295-325 4-33 (63)
94 1ixr_A Holliday junction DNA h 92.8 0.034 1.2E-06 52.1 1.7 51 292-342 69-123 (191)
95 3fhg_A Mjogg, N-glycosylase/DN 92.3 0.48 1.6E-05 44.6 9.0 123 238-364 50-185 (207)
96 1cuk_A RUVA protein; DNA repai 92.3 0.042 1.4E-06 51.9 1.5 52 291-342 69-124 (203)
97 1dgs_A DNA ligase; AMP complex 92.1 0.032 1.1E-06 61.6 0.6 48 299-346 445-495 (667)
98 1z00_B DNA repair endonuclease 92.1 0.15 5.1E-06 41.2 4.3 34 291-325 14-47 (84)
99 4gfj_A Topoisomerase V; helix- 92.0 0.1 3.4E-06 53.9 4.0 32 294-325 467-505 (685)
100 2owo_A DNA ligase; protein-DNA 91.9 0.025 8.6E-07 62.5 -0.5 49 298-346 449-500 (671)
101 3nyb_A Poly(A) RNA polymerase 91.9 0.98 3.3E-05 45.4 11.2 63 355-417 46-110 (323)
102 1wcn_A Transcription elongatio 91.6 0.096 3.3E-06 40.9 2.6 29 297-325 9-37 (70)
103 3t7k_A RTT107, regulator of TY 91.4 0.15 5.2E-06 49.3 4.3 66 41-109 41-119 (256)
104 2a1j_A DNA repair endonuclease 91.0 0.25 8.6E-06 37.5 4.4 49 254-313 4-53 (63)
105 3c65_A Uvrabc system protein C 90.8 0.037 1.3E-06 53.1 -0.6 50 254-313 173-222 (226)
106 2yg9_A DNA-3-methyladenine gly 90.1 0.48 1.7E-05 45.2 6.6 59 255-315 105-166 (225)
107 3sgi_A DNA ligase; HET: DNA AM 89.9 0.059 2E-06 58.9 0.0 88 254-351 491-586 (615)
108 3huf_A DNA repair and telomere 89.5 0.36 1.2E-05 48.4 5.3 58 36-97 126-187 (325)
109 4dez_A POL IV 1, DNA polymeras 89.2 0.19 6.7E-06 51.1 3.3 29 298-326 181-209 (356)
110 1b22_A DNA repair protein RAD5 89.2 0.12 4E-06 44.3 1.3 49 293-342 24-74 (114)
111 3i0w_A 8-oxoguanine-DNA-glycos 88.8 0.93 3.2E-05 44.9 7.8 58 254-314 170-230 (290)
112 2edu_A Kinesin-like protein KI 88.7 0.19 6.6E-06 41.5 2.3 43 294-342 39-86 (98)
113 3n0u_A Probable N-glycosylase/ 88.1 0.26 8.8E-06 47.0 3.0 95 264-364 100-197 (219)
114 3bzc_A TEX; helix-turn-helix, 87.1 0.55 1.9E-05 52.8 5.4 50 252-313 506-556 (785)
115 3osn_A DNA polymerase IOTA; ho 87.0 0.31 1.1E-05 50.9 3.2 29 297-325 236-264 (420)
116 1z00_B DNA repair endonuclease 87.0 0.65 2.2E-05 37.4 4.3 50 254-314 18-68 (84)
117 2jhn_A ALKA, 3-methyladenine D 86.9 0.66 2.3E-05 46.0 5.4 59 255-317 174-232 (295)
118 2va8_A SSO2462, SKI2-type heli 86.8 0.32 1.1E-05 53.9 3.3 35 288-323 651-685 (715)
119 2zj8_A DNA helicase, putative 86.7 0.19 6.4E-06 55.9 1.3 49 291-340 643-693 (720)
120 1jx4_A DNA polymerase IV (fami 86.3 0.23 7.7E-06 50.5 1.6 29 297-325 180-208 (352)
121 3c1y_A DNA integrity scanning 86.2 0.46 1.6E-05 48.8 3.8 51 291-342 311-363 (377)
122 3gqc_A DNA repair protein REV1 86.2 0.35 1.2E-05 51.8 3.0 29 297-325 317-345 (504)
123 4e8f_A Poly(A) RNA polymerase 86.0 1.2 4.1E-05 46.2 7.0 58 357-414 71-129 (405)
124 1wcn_A Transcription elongatio 85.7 0.74 2.5E-05 35.8 3.9 52 254-313 7-58 (70)
125 1im4_A DBH; DNA polymerase PAL 85.6 0.27 9.3E-06 46.8 1.7 28 297-324 186-213 (221)
126 2bgw_A XPF endonuclease; hydro 85.1 0.46 1.6E-05 44.9 3.0 49 293-342 160-210 (219)
127 2h56_A DNA-3-methyladenine gly 85.1 1.2 4.2E-05 42.5 6.1 60 254-315 96-158 (233)
128 1ylq_A Putative nucleotidyltra 84.9 1.6 5.4E-05 35.6 5.9 31 365-395 14-46 (96)
129 4glx_A DNA ligase; inhibitor, 84.8 0.15 5.3E-06 55.4 -0.5 49 298-346 449-500 (586)
130 3bq0_A POL IV, DBH, DNA polyme 84.2 0.27 9.2E-06 50.0 1.0 29 297-325 181-209 (354)
131 2aq4_A DNA repair protein REV1 83.9 0.57 1.9E-05 49.1 3.3 29 297-325 243-273 (434)
132 1no5_A Hypothetical protein HI 82.6 4.2 0.00014 34.0 7.8 63 346-413 9-72 (114)
133 4gns_A Chitin biosynthesis pro 82.0 1.3 4.5E-05 40.3 4.5 89 19-111 162-256 (290)
134 3c65_A Uvrabc system protein C 82.0 0.27 9.4E-06 47.0 0.0 48 295-344 173-222 (226)
135 3bqs_A Uncharacterized protein 81.6 1.1 3.6E-05 36.9 3.4 56 252-313 2-57 (93)
136 3vdp_A Recombination protein R 81.1 0.81 2.8E-05 43.1 2.9 21 292-312 23-43 (212)
137 4f4y_A POL IV, DNA polymerase 81.0 0.32 1.1E-05 49.7 0.1 28 298-325 182-209 (362)
138 2nrt_A Uvrabc system protein C 80.8 0.87 3E-05 43.3 3.0 49 254-313 168-217 (220)
139 4fh3_A Poly(A) RNA polymerase 80.7 2.6 9E-05 42.3 6.8 58 357-414 43-101 (349)
140 2p6r_A Afuhel308 helicase; pro 79.8 1.1 3.6E-05 49.6 3.8 40 285-325 623-662 (702)
141 2nrt_A Uvrabc system protein C 79.8 1.3 4.6E-05 42.1 3.9 31 294-325 167-197 (220)
142 3im1_A Protein SNU246, PRE-mRN 79.6 3.9 0.00013 40.9 7.6 28 297-324 159-186 (328)
143 1vdd_A Recombination protein R 79.1 1 3.5E-05 42.8 2.9 22 291-312 8-29 (228)
144 1exn_A 5'-exonuclease, 5'-nucl 79.1 1 3.4E-05 44.7 3.0 26 299-325 207-232 (290)
145 1kea_A Possible G-T mismatches 78.2 1.3 4.6E-05 41.9 3.4 23 292-314 112-134 (221)
146 3fhf_A Mjogg, N-glycosylase/DN 77.7 2 7E-05 40.6 4.5 93 266-365 96-193 (214)
147 3q8k_A Flap endonuclease 1; he 76.7 1.3 4.4E-05 44.9 3.0 25 299-325 236-261 (341)
148 3pzp_A DNA polymerase kappa; D 76.7 1.4 4.8E-05 47.2 3.5 28 298-325 341-368 (517)
149 1kg2_A A/G-specific adenine gl 76.6 1.5 5.2E-05 41.6 3.3 22 293-314 107-128 (225)
150 3n5n_X A/G-specific adenine DN 75.2 5.9 0.0002 39.1 7.2 22 293-314 126-148 (287)
151 2abk_A Endonuclease III; DNA-r 74.9 2.5 8.4E-05 39.7 4.3 23 292-314 106-128 (211)
152 3psf_A Transcription elongatio 74.6 2.2 7.5E-05 49.4 4.5 47 254-312 717-765 (1030)
153 2xhi_A N-glycosylase/DNA lyase 74.3 3.6 0.00012 42.0 5.6 53 261-314 215-272 (360)
154 1t94_A Polymerase (DNA directe 74.3 1.8 6.2E-05 45.5 3.5 29 297-325 284-312 (459)
155 1wot_A Putative minimal nucleo 74.0 5.1 0.00017 32.6 5.5 48 346-395 4-53 (98)
156 2rff_A Putative nucleotidyltra 73.3 4.8 0.00016 33.8 5.3 41 354-395 19-61 (111)
157 2q0z_X Protein Pro2281; SEC63, 73.3 5.1 0.00017 40.3 6.4 28 297-324 163-190 (339)
158 3sgi_A DNA ligase; HET: DNA AM 72.5 0.75 2.6E-05 50.2 0.0 65 296-361 459-532 (615)
159 4ecq_A DNA polymerase ETA; tra 72.4 1.2 4.1E-05 46.6 1.5 28 298-325 256-284 (435)
160 3qe9_Y Exonuclease 1; exonucle 71.9 2.2 7.6E-05 43.4 3.4 27 298-324 228-255 (352)
161 1orn_A Endonuclease III; DNA r 70.4 3.1 0.00011 39.5 3.8 22 293-314 111-132 (226)
162 1kg2_A A/G-specific adenine gl 69.9 6 0.0002 37.4 5.7 66 232-304 85-152 (225)
163 1pu6_A 3-methyladenine DNA gly 69.8 2.2 7.5E-05 40.3 2.6 25 292-316 118-142 (218)
164 3psi_A Transcription elongatio 69.8 3.2 0.00011 48.8 4.5 46 254-311 714-761 (1219)
165 1rxw_A Flap structure-specific 69.7 2.4 8.1E-05 42.7 3.0 25 299-325 239-264 (336)
166 1a76_A Flap endonuclease-1 pro 68.9 2.6 8.8E-05 42.3 3.1 25 299-325 229-254 (326)
167 1ci4_A Protein (barrier-TO-aut 68.3 4.3 0.00015 32.9 3.6 44 278-323 3-46 (89)
168 1b22_A DNA repair protein RAD5 67.2 3.1 0.00011 35.4 2.8 63 252-323 24-93 (114)
169 1kea_A Possible G-T mismatches 67.2 5.1 0.00017 37.8 4.6 43 232-274 91-135 (221)
170 1jx4_A DNA polymerase IV (fami 67.1 6.8 0.00023 39.4 5.8 53 256-318 180-234 (352)
171 3mab_A Uncharacterized protein 67.1 2.3 8E-05 34.8 1.9 38 252-293 2-39 (93)
172 4f92_B U5 small nuclear ribonu 66.6 7.9 0.00027 47.4 7.1 29 297-325 1559-1587(1724)
173 1q79_A Poly(A) polymerase alph 66.4 7.2 0.00025 41.7 6.0 50 366-415 92-142 (514)
174 2fmp_A DNA polymerase beta; nu 65.7 2.3 7.8E-05 43.0 1.9 49 294-342 56-114 (335)
175 4e9f_A Methyl-CPG-binding doma 65.3 2.5 8.6E-05 38.1 1.9 23 252-274 102-124 (161)
176 1z3e_B DNA-directed RNA polyme 64.7 7.4 0.00025 30.3 4.3 23 254-276 41-63 (73)
177 2hhp_A Poly(A) polymerase; tem 64.2 11 0.00039 40.3 7.0 49 368-416 81-130 (530)
178 4gfj_A Topoisomerase V; helix- 63.8 4.4 0.00015 42.0 3.5 55 256-322 470-524 (685)
179 2bcq_A DNA polymerase lambda; 63.5 2 6.9E-05 43.4 1.0 50 294-343 56-113 (335)
180 2ikf_A RNA uridylyl transferas 63.5 7.2 0.00025 39.4 5.2 65 348-416 49-131 (353)
181 2ihm_A POL MU, DNA polymerase 63.4 2.1 7.2E-05 43.7 1.1 46 297-342 63-118 (360)
182 3psf_A Transcription elongatio 62.9 2.8 9.6E-05 48.5 2.1 32 293-324 715-752 (1030)
183 1ul1_X Flap endonuclease-1; pr 62.7 4 0.00014 41.8 3.1 32 293-325 224-261 (379)
184 3vdp_A Recombination protein R 62.4 3.5 0.00012 38.8 2.3 32 254-285 26-57 (212)
185 3n5n_X A/G-specific adenine DN 62.1 5.9 0.0002 39.1 4.1 66 232-304 104-172 (287)
186 2kng_A Protein LSR2; DNA-bindi 62.1 5.1 0.00018 29.5 2.7 22 449-470 15-36 (55)
187 3bzc_A TEX; helix-turn-helix, 61.7 3.8 0.00013 46.0 2.9 32 293-324 506-542 (785)
188 3fsp_A A/G-specific adenine gl 61.5 6.6 0.00023 39.9 4.5 66 232-304 94-161 (369)
189 3r8n_M 30S ribosomal protein S 61.0 6.3 0.00022 33.5 3.5 25 293-317 14-39 (114)
190 1orn_A Endonuclease III; DNA r 60.7 9 0.00031 36.2 5.0 43 232-274 89-133 (226)
191 2abk_A Endonuclease III; DNA-r 59.0 8 0.00027 36.1 4.2 43 232-274 85-129 (211)
192 4dez_A POL IV 1, DNA polymeras 58.9 13 0.00043 37.5 6.0 53 256-318 180-234 (356)
193 3c1y_A DNA integrity scanning 58.9 4.2 0.00014 41.6 2.4 20 294-313 346-365 (377)
194 3u5c_S 40S ribosomal protein S 57.9 5.7 0.0002 35.2 2.8 25 293-317 28-53 (146)
195 1b43_A Protein (FEN-1); nuclea 57.5 4.4 0.00015 40.8 2.3 26 299-325 241-266 (340)
196 3fhg_A Mjogg, N-glycosylase/DN 57.5 4.5 0.00015 37.8 2.2 22 252-273 115-136 (207)
197 1pzn_A RAD51, DNA repair and r 57.4 2.6 8.8E-05 42.6 0.5 30 296-325 36-65 (349)
198 1mpg_A ALKA, 3-methyladenine D 56.9 11 0.00036 36.9 4.9 24 291-314 203-226 (282)
199 2izo_A FEN1, flap structure-sp 56.9 4 0.00014 41.2 1.8 25 299-324 238-262 (346)
200 3psi_A Transcription elongatio 56.5 4.1 0.00014 47.9 2.1 44 293-342 712-761 (1219)
201 1kny_A Kntase, kanamycin nucle 55.8 11 0.00038 36.1 4.8 51 345-395 6-59 (253)
202 2b4v_A RNA editing complex pro 55.7 12 0.0004 39.5 5.3 40 356-395 46-87 (468)
203 3osn_A DNA polymerase IOTA; ho 55.7 12 0.00042 38.7 5.3 53 256-318 236-290 (420)
204 3k4g_A DNA-directed RNA polyme 54.7 14 0.00047 29.8 4.3 23 254-276 44-66 (86)
205 3iz6_M 40S ribosomal protein S 53.9 7 0.00024 34.9 2.7 26 292-317 25-51 (152)
206 3j20_O 30S ribosomal protein S 53.0 7.1 0.00024 34.7 2.6 25 293-317 21-46 (148)
207 1px5_A 2'-5'-oligoadenylate sy 52.6 22 0.00075 35.6 6.6 26 370-395 56-83 (349)
208 1jms_A Terminal deoxynucleotid 52.2 4.3 0.00015 41.7 1.2 46 297-342 82-137 (381)
209 1vdd_A Recombination protein R 52.0 6.6 0.00023 37.3 2.3 32 254-285 12-43 (228)
210 4ebj_A Aminoglycoside nucleoti 51.9 15 0.00051 35.6 4.8 48 347-395 18-68 (272)
211 3gqc_A DNA repair protein REV1 51.3 18 0.00061 38.5 5.8 53 256-318 317-371 (504)
212 3gfk_B DNA-directed RNA polyme 51.1 15 0.0005 29.1 3.9 23 254-276 48-70 (79)
213 2xhi_A N-glycosylase/DNA lyase 50.8 16 0.00054 37.1 5.2 50 224-273 211-272 (360)
214 1pu6_A 3-methyladenine DNA gly 50.8 11 0.00039 35.3 3.8 43 232-274 93-141 (218)
215 1z3e_B DNA-directed RNA polyme 50.6 4.5 0.00016 31.6 0.8 44 300-343 13-58 (73)
216 3ory_A Flap endonuclease 1; hy 50.5 6.5 0.00022 40.1 2.2 24 299-324 255-279 (363)
217 3bq0_A POL IV, DBH, DNA polyme 50.3 15 0.00051 36.9 4.9 53 256-318 181-235 (354)
218 3mfi_A DNA polymerase ETA; DNA 49.7 5.3 0.00018 42.7 1.5 27 298-324 310-340 (520)
219 1gm5_A RECG; helicase, replica 49.5 4.9 0.00017 45.2 1.2 27 297-323 117-143 (780)
220 3fsp_A A/G-specific adenine gl 48.7 15 0.00053 37.1 4.7 22 293-314 116-137 (369)
221 3i0w_A 8-oxoguanine-DNA-glycos 48.5 19 0.00063 35.4 5.1 50 228-278 176-234 (290)
222 4f4y_A POL IV, DNA polymerase 48.2 15 0.0005 37.2 4.4 53 256-318 181-235 (362)
223 1mpg_A ALKA, 3-methyladenine D 48.1 18 0.00061 35.2 4.9 53 225-278 170-230 (282)
224 2h56_A DNA-3-methyladenine gly 47.9 11 0.00036 35.9 3.1 21 253-273 137-157 (233)
225 2vqe_M 30S ribosomal protein S 47.7 5.6 0.00019 34.4 1.0 25 293-317 15-40 (126)
226 4b21_A Probable DNA-3-methylad 47.7 15 0.0005 35.0 4.1 42 232-273 118-169 (232)
227 2xzm_M RPS18E; ribosome, trans 47.3 13 0.00044 33.3 3.4 25 293-317 28-53 (155)
228 2aq4_A DNA repair protein REV1 46.2 18 0.0006 37.6 4.8 56 256-319 243-301 (434)
229 3ci0_K Pseudopilin GSPK; gener 45.9 5.1 0.00017 39.6 0.5 76 249-325 153-235 (298)
230 3gfk_B DNA-directed RNA polyme 45.3 7.5 0.00026 30.8 1.3 43 301-343 21-65 (79)
231 3k4g_A DNA-directed RNA polyme 45.0 8.5 0.00029 31.0 1.6 42 302-343 18-61 (86)
232 2i1q_A DNA repair and recombin 44.8 10 0.00034 37.3 2.5 29 297-325 5-33 (322)
233 3hj4_A Minor editosome-associa 44.4 25 0.00086 36.0 5.5 36 361-396 38-74 (384)
234 2ziu_A MUS81 protein; helix-ha 43.7 15 0.00053 36.1 3.7 59 254-314 237-303 (311)
235 4e9f_A Methyl-CPG-binding doma 42.0 11 0.00037 33.9 2.0 19 294-312 103-121 (161)
236 2zc2_A DNAD-like replication p 41.7 14 0.00048 28.6 2.4 19 305-323 59-77 (78)
237 1r89_A TRNA nucleotidyltransfe 41.4 27 0.00092 36.4 5.2 30 369-398 40-71 (437)
238 2yg9_A DNA-3-methyladenine gly 41.2 25 0.00086 33.1 4.6 42 232-273 115-165 (225)
239 1coo_A RNA polymerase alpha su 38.8 26 0.0009 28.8 3.7 23 254-276 56-78 (98)
240 3s6i_A DNA-3-methyladenine gly 38.1 26 0.00089 33.1 4.2 46 228-273 102-158 (228)
241 2csb_A Topoisomerase V, TOP61; 36.9 48 0.0016 32.1 5.7 66 270-337 388-458 (519)
242 1t94_A Polymerase (DNA directe 36.6 41 0.0014 35.0 5.8 52 256-318 284-337 (459)
243 3fhf_A Mjogg, N-glycosylase/DN 36.0 20 0.00069 33.7 2.9 21 253-273 123-144 (214)
244 2va8_A SSO2462, SKI2-type heli 34.4 1.9E+02 0.0065 31.3 11.0 49 254-313 657-705 (715)
245 3n0u_A Probable N-glycosylase/ 34.2 14 0.00048 34.8 1.6 21 253-273 128-149 (219)
246 1ci4_A Protein (barrier-TO-aut 33.2 20 0.00067 29.0 2.0 57 254-313 18-79 (89)
247 3im1_A Protein SNU246, PRE-mRN 32.9 3E+02 0.01 26.8 11.3 52 254-313 157-208 (328)
248 3e1s_A Exodeoxyribonuclease V, 31.8 9.9 0.00034 41.1 0.0 47 299-345 15-63 (574)
249 3mfi_A DNA polymerase ETA; DNA 30.7 20 0.00069 38.2 2.2 59 256-318 309-390 (520)
250 4ecq_A DNA polymerase ETA; tra 30.6 61 0.0021 33.5 5.9 54 256-318 255-310 (435)
251 3pkr_A FLIG, flagellar motor s 30.2 82 0.0028 30.7 6.3 96 227-323 71-188 (279)
252 2z43_A DNA repair and recombin 28.9 12 0.0004 37.0 0.0 47 297-343 14-62 (324)
253 3pq1_A Poly(A) RNA polymerase; 28.2 57 0.0019 34.2 5.1 39 357-395 161-200 (464)
254 2kp7_A Crossover junction endo 26.7 37 0.0013 27.1 2.6 20 294-313 57-76 (87)
255 2kz3_A Putative uncharacterize 25.9 1.1E+02 0.0036 24.3 5.2 51 300-360 9-59 (83)
256 3bbn_M Ribosomal protein S13; 25.7 7 0.00024 34.6 -2.0 22 295-316 62-84 (145)
257 2i5u_A DNAD domain protein; st 25.6 31 0.0011 27.1 2.0 19 305-323 64-82 (83)
258 3e1s_A Exodeoxyribonuclease V, 25.1 14 0.00049 39.8 -0.2 49 261-317 18-67 (574)
259 2i1q_A DNA repair and recombin 24.5 96 0.0033 30.0 5.8 87 254-348 3-97 (322)
260 2zix_A Crossover junction endo 24.2 12 0.00041 36.9 -0.9 59 254-314 233-299 (307)
261 2jhn_A ALKA, 3-methyladenine D 23.1 74 0.0025 31.0 4.6 21 253-273 209-229 (295)
262 3pzp_A DNA polymerase kappa; D 22.8 96 0.0033 32.9 5.7 52 256-318 340-393 (517)
No 1
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=100.00 E-value=1.2e-78 Score=629.95 Aligned_cols=295 Identities=30% Similarity=0.566 Sum_probs=272.5
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCccccchhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHH
Q 010406 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFE 286 (511)
Q Consensus 207 ~~~N~~ia~~l~~la~~~e~~g~~~r~~aY~rAa~~l~~l~~~i~s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~ 286 (511)
+|+|++|+++|++||++||+.|+.+|++||++||++|+++|++|+++.++.+|||||+++|++|.||++||++.++|+|+
T Consensus 14 ~~~N~~i~~~L~~ia~~~e~~g~~~r~~AYr~Aa~~l~~l~~~i~~~~~l~~lpGIG~~~A~kI~E~l~tG~~~~le~L~ 93 (360)
T 2ihm_A 14 THHNTLLSEALETLAEAAGFEANEGRLLSFSRAASVLKSLPCPVASLSQLHGLPYFGEHSTRVIQELLEHGTCEEVKQVR 93 (360)
T ss_dssp SCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCSSCCCSGGGGTTCTTCCHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCcccCCHHHHhcCCCCCHHHHHHHHHHHHcCChHHHHHHh
Confidence 47899999999999999999996689999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhHHHHHHhcccCCCHHHHHHHHHhCCCCHHHHhhc-cCcchhhhhcccchhhhccCcCHHHHHHHHHHHHHHhhhc
Q 010406 287 KDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEV 365 (511)
Q Consensus 287 ~~~~~~~l~lf~~I~GvGpktA~~l~~~Gi~tledL~~~-~~L~~~q~~Glk~~~d~~~~i~r~ea~~~~~iv~~~~~~~ 365 (511)
+++.+.++..|++|||||||||++||++||+||+||+.. ++|+..|++|++||+|+.+||||+||+++.++|.+.+..+
T Consensus 94 ~d~~~~~l~~l~~I~GvG~kta~~l~~~Gi~tledL~~~~~~L~~~~~~Gl~~~~d~~~ripr~ea~~i~~~i~~~l~~~ 173 (360)
T 2ihm_A 94 CSERYQTMKLFTQVFGVGVKTANRWYQEGLRTLDELREQPQRLTQQQKAGLQYYQDLSTPVRRADAEALQQLIEAAVRQT 173 (360)
T ss_dssp HSHHHHHHHHHHTSTTCCHHHHHHHHHTTCCSHHHHHTCCTTCCHHHHHHHHTHHHHHSCEEHHHHHHHHHHHHHHHHTT
T ss_pred cccchHHHHHHhCCCCCCHHHHHHHHHcCCCCHHHHHhcccchHHHHHHHHHHHHHhcCCEEHHHHHHHHHHHHHHHHhc
Confidence 988889999999999999999999999999999999943 5899999999999999999999999999999999988888
Q ss_pred CCCeEEEEccceeecCCccCCeeEEEecCCcchhhhHHHHHHHHHHHhcceeeeeE----e-------------------
Q 010406 366 LPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLI----F------------------- 422 (511)
Q Consensus 366 ~p~~~v~~~Gs~RRgke~~gDvDiLit~~~~~~~~~~l~~~v~~l~~~g~l~~~l~----~------------------- 422 (511)
.|+++|++||||||||++||||||||||+++..+.++|.++++.|.+.|++++.+. +
T Consensus 174 ~~~~~v~i~GSyRRgket~gDvDilit~~~~~~~~~ll~~v~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~k 253 (360)
T 2ihm_A 174 LPGATVTLTGGFRRGKLQGHDVDFLITHPEEGQEVGLLPKVMSCLQSQGLVLYHQYHRSHLADSAHNLRQRSSTMDVFER 253 (360)
T ss_dssp CTTCEEEECHHHHTTCSEESEEEEEEECSSTTTTTTHHHHHHHHHHHTTCEEEEEEECCC---------------CCCCE
T ss_pred CCCcEEEEccccccCCCccCCeEEEEecCChhhhhhHHHHHHHHHHhCCCeeeecchhhhhccccccccccccccccccc
Confidence 99999999999999999999999999999999888999999999999999974210 0
Q ss_pred -------e--------------------cccccccCcchHHHHHHHhcCcHHHHHHHHHHHHH-cCCccCCCCCcccccC
Q 010406 423 -------S--------------------THSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAES-KGYRLDDTGLFPATYG 474 (511)
Q Consensus 423 -------~--------------------~~~~~~~p~~~~~~aLl~~TGS~~fnr~lR~~A~~-kg~~L~~~gL~~~~~~ 474 (511)
. ..+..+||+++||+||+|||||++|||+||++|++ |||+||+||||+...
T Consensus 254 ~~~v~~lp~~~~~~~g~~~~~~~~~~~~rVDl~~vp~~~~g~ALl~fTGS~~fnr~lR~~A~~~kG~~L~e~Gl~~~~~- 332 (360)
T 2ihm_A 254 SFCILGLPQPQQAALAGALPPCPTWKAVRVDLVVTPSSQFPFALLGWTGSQFFERELRRFSRQEKGLWLNSHGLFDPEQ- 332 (360)
T ss_dssp EEEEEEEECC-------------CEEEEEEEEEECCTTSHHHHHHHHHSCHHHHHHHHHHHHHHHSCEECSSCEECSST-
T ss_pred eeeEeecCccccccccccccccccCCceEEEEEEECHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCcCccccccCCC-
Confidence 0 01234999999999999999999999999999986 999999999996431
Q ss_pred CCCcccccccccCCCCCHHHHHhhcCCCCCCCCCcCC
Q 010406 475 SGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 511 (511)
Q Consensus 475 ~~~~~~~~~~~~~~~~tEedIf~~LGL~yipPe~Rn~ 511 (511)
+..+++.+|+|||++|||||||||+||.
T Consensus 333 ---------~~~i~~~~E~~If~~LGl~yipPe~Re~ 360 (360)
T 2ihm_A 333 ---------KRVFHATSEEDVFRLLGLKYLPPEQRNA 360 (360)
T ss_dssp ---------TCCCCCSSHHHHHHHTTCCCCCGGGBCC
T ss_pred ---------CccCCCCCHHHHHHHcCCCCCCccccCC
Confidence 3578999999999999999999999984
No 2
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=100.00 E-value=1.6e-78 Score=623.43 Aligned_cols=307 Identities=37% Similarity=0.649 Sum_probs=274.5
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCccccchhhhcCCCCCCHHHHHHHHHHHHhCCchh
Q 010406 202 LLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSK 281 (511)
Q Consensus 202 ~~~~~~~~N~~ia~~l~~la~~~e~~g~~~r~~aY~rAa~~l~~l~~~i~s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~ 281 (511)
|+.+++|+|++|+++|++||++|++.|+++|++||++||++|+++|++|+++.++.+|||||+++|++|.||++||++.+
T Consensus 5 ~~~~~~~~N~~i~~~L~~ia~~~e~~g~~~r~~AYr~Aa~~l~~l~~~i~~~~~l~~lpGIG~~~A~kI~E~l~tG~~~~ 84 (335)
T 2bcq_A 5 SSQKATNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRK 84 (335)
T ss_dssp -------CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSCCSCCCCHHHHHTSTTCCHHHHHHHHHHHHSSSCGG
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHcCccHhHHHHHHHHHHHHhCCccccCHHHHhcCCCccHHHHHHHHHHHHcCCchH
Confidence 33466799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhchhHHHHHHhcccCCCHHHHHHHHHhCCCCHHHHhhccCcchhhhhcccchhhhccCcCHHHHHHHHHHHHHH
Q 010406 282 LEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKA 361 (511)
Q Consensus 282 le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~Gi~tledL~~~~~L~~~q~~Glk~~~d~~~~i~r~ea~~~~~iv~~~ 361 (511)
+|+|+.+ +++++||++|||||||||++||++||+||+||+.+.+++..|++|++||+|+.+||||+||+++.+.|.+.
T Consensus 85 le~l~~~--~p~l~ll~~v~GiG~k~a~~l~~~Gi~tledL~~a~~~k~~q~Igl~~~~~~~~ripr~ea~~ia~~i~~~ 162 (335)
T 2bcq_A 85 LDHISES--VPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKA 162 (335)
T ss_dssp GGGCCTT--HHHHHHHHTSTTCCHHHHHHHHHTTCCSHHHHHHHCCCCHHHHHHHHTTTGGGCCEEHHHHHHHHHHHHHH
T ss_pred HHHHhhh--hHHHHHHhcCCCcCHHHHHHHHHcCCCCHHHHHHHhcccHHHHHHHHHHHHhcCCEEHHHHHHHHHHHHHH
Confidence 9999754 45999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhcCCCeEEEEccceeecCCccCCeeEEEecCCcchhhhHHHHHHHHHHHhcceeeeeEe-----------ec------
Q 010406 362 GEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIF-----------ST------ 424 (511)
Q Consensus 362 ~~~~~p~~~v~~~Gs~RRgke~~gDvDiLit~~~~~~~~~~l~~~v~~l~~~g~l~~~l~~-----------~~------ 424 (511)
+..+.|+++|++||||||||++||||||||||+++.++.++|.++++.|.+.|++++++.. +.
T Consensus 163 l~~~~~~~~v~i~GS~RRgket~gDiDilit~~~~~~~~~ll~~v~~~l~~~~~i~~~l~~~~~~g~~~k~~~v~~l~~~ 242 (335)
T 2bcq_A 163 AQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGP 242 (335)
T ss_dssp HHTTCTTCEEEECHHHHTTCSEESSEEEEEECTTSSTTTTCHHHHHHHHHHTTCEEEEEECCTTSTTCCEEEEEECCSST
T ss_pred HHhcCCCcEEEEccccccCCCCCCCeEEEEecCCchhhhhHHHHHHHHHHhCCchHHHhhccccCCCCceEEEEEEccCC
Confidence 8888899999999999999999999999999999998899999999999999999865433 11
Q ss_pred ------ccccccCcchHHHHHHHhcCcHHHHHHHHHHHHHcCCccCCCCCcccccCC-CCcccccccccCCCCCHHHHHh
Q 010406 425 ------HSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS-GGKQGVRARTSLKFDTEKEVFD 497 (511)
Q Consensus 425 ------~~~~~~p~~~~~~aLl~~TGS~~fnr~lR~~A~~kg~~L~~~gL~~~~~~~-~~~~~~~~~~~~~~~tEedIf~ 497 (511)
.+..+||+++||+||+|||||++|||+||++|+++||+||+||||+.+... ++.+ ...+..+++.+|++||+
T Consensus 243 ~~~~~rVDl~~vp~~~~g~ALl~fTGS~~fnr~lR~~A~~~G~kL~e~Gl~~~~~r~~~~~~-~~~~~~~~~~~E~~If~ 321 (335)
T 2bcq_A 243 GRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCK-VGPGRVLPTPTEKDVFR 321 (335)
T ss_dssp TCCCEEEEEEECCGGGHHHHHHHHHCCHHHHHHHHHHHHHTTCEECSSCEEESCEECTTSCE-EECCEECCCSSHHHHHH
T ss_pred CCCceEEEEEEECHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCcccccccccccccccccc-ccCCCcCCCCCHHHHHH
Confidence 012399999999999999999999999999999999999999999753211 1211 11245799999999999
Q ss_pred hcCCCCCCCCCcCC
Q 010406 498 FLGFPWLEPHERNL 511 (511)
Q Consensus 498 ~LGL~yipPe~Rn~ 511 (511)
+|||||||||+||+
T Consensus 322 ~LGl~yipPe~Rn~ 335 (335)
T 2bcq_A 322 LLGLPYREPAERDW 335 (335)
T ss_dssp HTTCCCCCGGGGCC
T ss_pred HcCCCCcCccccCc
Confidence 99999999999996
No 3
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=100.00 E-value=4.2e-78 Score=629.38 Aligned_cols=295 Identities=29% Similarity=0.515 Sum_probs=271.3
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCccccchhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHH
Q 010406 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFE 286 (511)
Q Consensus 207 ~~~N~~ia~~l~~la~~~e~~g~~~r~~aY~rAa~~l~~l~~~i~s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~ 286 (511)
+|+|++|+++|++||++||+.|+.+|++||++||++|++||++|+++.++.+|||||++||++|.||++||++.+||+++
T Consensus 33 ~~~N~~i~~~L~~ia~~~e~~g~~~rv~AYr~Aa~~l~~l~~~i~~~~~l~~lpGIG~~ia~kI~E~l~tG~~~~le~l~ 112 (381)
T 1jms_A 33 NNYNQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLPFPITSMKDTEGIPCLGDKVKSIIEGIIEDGESSEAKAVL 112 (381)
T ss_dssp CCTTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTCSSCCCSGGGGTTCSSCCHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHhCCccccCHHHHhcCCCCcHHHHHHHHHHHHcCCcHHHHHHh
Confidence 58899999999999999999996689999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhHHHHHHhcccCCCHHHHHHHHHhCCCCHHHHhh-c-cCcchhhhhcccchhhhccCcCHHHHHHHHHHHHHHhhh
Q 010406 287 KDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-E-DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEE 364 (511)
Q Consensus 287 ~~~~~~~l~lf~~I~GvGpktA~~l~~~Gi~tledL~~-~-~~L~~~q~~Glk~~~d~~~~i~r~ea~~~~~iv~~~~~~ 364 (511)
+++.+.+|.+|++|||||||||++||++||+||+||++ . .+++..|++|++||+|+.+||||+||+++.++|.+.+..
T Consensus 113 ~d~~~~~l~~l~~I~GvGpk~a~~ly~~Gi~tledL~~~~g~kl~~~q~~Gl~~~~d~~~ripr~ea~~ia~~i~~~l~~ 192 (381)
T 1jms_A 113 NDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQSDKSLRFTQMQKAGFLYYEDLVSCVNRPEAEAVSMLVKEAVVT 192 (381)
T ss_dssp HCHHHHHHHHHHTSTTCCHHHHHHHHHTTCCSHHHHHHCSSCCCCHHHHHHHHTHHHHHSCBCHHHHHHHHHHHHHHHHH
T ss_pred cCcchhHHHHHHccCCCCHHHHHHHHHcCCCcHHHHHhCcccchHHHHHHHHHHHHHhcCCEEHHHHHHHHHHHHHHHHh
Confidence 98888999999999999999999999999999999995 2 379999999999999999999999999999999988888
Q ss_pred cCCCeEEEEccceeecCCccCCeeEEEecCCcchhhh--HHHHHHHHHHHhcceeeeeEe-e------------------
Q 010406 365 VLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKG--FLSKYVKKLKEMKFLREDLIF-S------------------ 423 (511)
Q Consensus 365 ~~p~~~v~~~Gs~RRgke~~gDvDiLit~~~~~~~~~--~l~~~v~~l~~~g~l~~~l~~-~------------------ 423 (511)
+.|+++|++||||||||++||||||||||+++..+.+ +|.++++.|.+.|++++.+.. +
T Consensus 193 ~~~~~~v~i~GSyRRgket~gDvDilit~~~~~~~~~~~ll~~vv~~L~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~~ 272 (381)
T 1jms_A 193 FLPDALVTMTGGFRRGKMTGHDVDFLITSPEATEDEEQQLLHKVTDFWKQQGLLLYCDILESTFEKFKQPSRKVDALDHF 272 (381)
T ss_dssp HCTTCEEEECHHHHTTCSCBSSEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEECCCCCTTCCCCSSCCSCCCC
T ss_pred cCCCcEEEEccccccCCCCcCCeEEEEeCCCccccchhhHHHHHHHHHHhCCCccccccccccccccccccccccccccc
Confidence 8999999999999999999999999999999987777 899999999999999542110 0
Q ss_pred ------------------------------cccccccCcchHHHHHHHhcCcHHHHHHHHHHHHH-cCCccCCCCCcccc
Q 010406 424 ------------------------------THSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAES-KGYRLDDTGLFPAT 472 (511)
Q Consensus 424 ------------------------------~~~~~~~p~~~~~~aLl~~TGS~~fnr~lR~~A~~-kg~~L~~~gL~~~~ 472 (511)
..++.+||+++||+||+|||||++|||+||++|++ |||+||+||||+..
T Consensus 273 ~k~~~i~~lp~~~~~~g~~~~~~~~~~~~~rVDl~~vp~~~~g~ALlyfTGS~~fnr~lR~~A~~~kG~kLne~GL~~~~ 352 (381)
T 1jms_A 273 QKCFLILKLDHGRVHSEKSGQQEGKGWKAIRVDLVMCPYDRRAFALLGWTGSRQFERDLRRYATHERKMMLDNHALYDRT 352 (381)
T ss_dssp EEEEEEEEEEGGGCCSSCC---CCSSEEEEEEEEEECCGGGHHHHHHHHHCCHHHHHHHHHHHHHHHCEEECSSCEEETT
T ss_pred cceeeEeecCccccccccccccccCCCCceEEEEEEECHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCcchhhcccCC
Confidence 01234999999999999999999999999999996 99999999999643
Q ss_pred cCCCCcccccccccCCCCCHHHHHhhcCCCCCCCCCcCC
Q 010406 473 YGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERNL 511 (511)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~tEedIf~~LGL~yipPe~Rn~ 511 (511)
. +..+++.+|+|||++|||||||||+||.
T Consensus 353 ~----------g~~i~~~sE~~If~~LGL~yipPe~Re~ 381 (381)
T 1jms_A 353 K----------RVFLEAESEEEIFAHLGLDYIEPWERNA 381 (381)
T ss_dssp T----------TEECCCSSHHHHHHHHTCCCCCGGGBCC
T ss_pred C----------CccCCCCCHHHHHHHcCCCCCChhhcCC
Confidence 1 3578999999999999999999999984
No 4
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=100.00 E-value=2.2e-75 Score=600.46 Aligned_cols=298 Identities=36% Similarity=0.659 Sum_probs=273.5
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCC-hhHHHHHHHHHHHhcCCccccchhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHH
Q 010406 208 DLNKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFE 286 (511)
Q Consensus 208 ~~N~~ia~~l~~la~~~e~~g~~-~r~~aY~rAa~~l~~l~~~i~s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~ 286 (511)
.+|++|+++|++||++|++.|+| +|++||++||++|++||++|+++.++.+|||||+++|++|.||++||++.+||+++
T Consensus 10 ~~N~~i~~~L~~ia~l~e~~~~~~~rv~AYr~Aa~~l~~l~~~i~~~~~l~~LpGIG~~~A~kI~E~l~tG~~~~le~l~ 89 (335)
T 2fmp_A 10 TLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIR 89 (335)
T ss_dssp CTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHCSSCCCCHHHHHTSTTCCHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhCCccccCHHHHhcCCCCcHHHHHHHHHHHHhCCcHHHHHHH
Confidence 36999999999999999999888 79999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhHHHHHHhcccCCCHHHHHHHHHhCCCCHHHHhh-ccCcchhhhhcccchhhhccCcCHHHHHHHHHHHHHHhhhc
Q 010406 287 KDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEV 365 (511)
Q Consensus 287 ~~~~~~~l~lf~~I~GvGpktA~~l~~~Gi~tledL~~-~~~L~~~q~~Glk~~~d~~~~i~r~ea~~~~~iv~~~~~~~ 365 (511)
+++.+..+..|++|||||||||++||++||+||+||++ +++|+..|++|++||+|+.+||||+||+++.+.|.+.+..+
T Consensus 90 ~~~~~~~l~~l~~V~GiGpk~a~~l~~~Gi~tledL~~a~~~l~~~~~~gl~~~~~~~~ripr~ea~~ia~~i~~~l~~~ 169 (335)
T 2fmp_A 90 QDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKV 169 (335)
T ss_dssp HCHHHHHHHHHTTSTTCCHHHHHHHHHTTCCSHHHHHTCGGGSCHHHHHHHHTHHHHTSCEEHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHhCCCCCCHHHHHHHHHcCCCCHHHHHHhhhhhHHHHHHHHHHHHHhcCcEEHHHHHHHHHHHHHHHHhc
Confidence 99888999999999999999999999999999999997 67899999999999999999999999999999998888888
Q ss_pred CCCeEEEEccceeecCCccCCeeEEEecCCcchhh----hHHHHHHHHHHHhcceeeeeEee-----c------------
Q 010406 366 LPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHK----GFLSKYVKKLKEMKFLREDLIFS-----T------------ 424 (511)
Q Consensus 366 ~p~~~v~~~Gs~RRgke~~gDvDiLit~~~~~~~~----~~l~~~v~~l~~~g~l~~~l~~~-----~------------ 424 (511)
.|++++++||||||||++||||||||||++..++. +++.++++.|.+.|++++.+..+ .
T Consensus 170 ~~~~~v~i~GS~RRgket~gDiDilit~~~~~~~~~~~~~l~~~v~~~l~~~~~v~~~l~~g~~k~~~v~~l~~~~~~~~ 249 (335)
T 2fmp_A 170 DSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKE 249 (335)
T ss_dssp CTTCEEEECHHHHTTCSEESSEEEEEECTTBCSSCBCSSCHHHHHHHHHHHTTSEEEEEEECSSEEEEEECCCCCTTCCC
T ss_pred CCCcEEEeccccccccCccCCeEEEEECCCccccccchhhhHHHHHHHHHhCCcceeeeecCCceEEEEEEeCCcccccC
Confidence 89999999999999999999999999999876655 78999999999999998654321 0
Q ss_pred -----ccccccCcchHHHHHHHhcCcHHHHHHHHHHHHHcCCccCCCCCcccccCCCCcccccccccCCCCCHHHHHhhc
Q 010406 425 -----HSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFL 499 (511)
Q Consensus 425 -----~~~~~~p~~~~~~aLl~~TGS~~fnr~lR~~A~~kg~~L~~~gL~~~~~~~~~~~~~~~~~~~~~~tEedIf~~L 499 (511)
.+..+||+++||+||+|||||++|||+||++|++|||+||+||||+... +|. .+..+++.+|++||++|
T Consensus 250 ~~~~rVDl~~vp~~~~~~aLl~fTGS~~fnr~lR~~A~~kG~kl~e~Gl~~~~~--~~~----~g~~~~~~~E~~If~~L 323 (335)
T 2fmp_A 250 YPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGV--TGV----AGEPLPVDSEKDIFDYI 323 (335)
T ss_dssp CCCEEEEEEECCGGGHHHHHHHHHCCHHHHHHHHHHHHHTTEEECSSCEEECCT--TCC----CCCCCCCCSHHHHHHHT
T ss_pred CCceEEEEEEECHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCcccccccccccc--ccc----CCCccCCCCHHHHHHHc
Confidence 1234999999999999999999999999999999999999999997532 221 23578999999999999
Q ss_pred CCCCCCCCCcCC
Q 010406 500 GFPWLEPHERNL 511 (511)
Q Consensus 500 GL~yipPe~Rn~ 511 (511)
||||||||+||+
T Consensus 324 Gl~yipPe~Re~ 335 (335)
T 2fmp_A 324 QWKYREPKDRSE 335 (335)
T ss_dssp TCCCCCGGGCCC
T ss_pred CCCCCCccccCC
Confidence 999999999985
No 5
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=100.00 E-value=4e-60 Score=520.36 Aligned_cols=283 Identities=30% Similarity=0.427 Sum_probs=252.2
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCC-hhHHHHHHHHHHHhcCCccccchhh-----hcCCCCCCHHHHHHHHHHHHhCCchh
Q 010406 208 DLNKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIESADQ-----VKGLPGIGKSMQDHIQEIVTTGKLSK 281 (511)
Q Consensus 208 ~~N~~ia~~l~~la~~~e~~g~~-~r~~aY~rAa~~l~~l~~~i~s~~~-----l~~lpgIG~~ia~kI~Eil~tG~~~~ 281 (511)
|+|++|+++|++||++||++|+| +|++||+|||++|+++|++|+++.+ +..|||||++++.+|.|+++||.+..
T Consensus 1 ~~N~~i~~~l~~~a~~~e~~g~~~~r~~aYr~Aa~~l~~~~~~i~~~~~~~~~~~~~lp~iG~~~~~~i~~~v~~g~~~l 80 (575)
T 3b0x_A 1 MRNQELARIFEEIGLMSEFLGDNPFRVRAYHQAARTLYDLDTPIEEIAEKGKEALMELPGVGPDLAEKILEFLRTGKVRK 80 (575)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHCCSCHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHHHSSCHH
T ss_pred CChHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhCCcchhhHhhcchhHHHhCCCCCHHHHHHHHHHHHcCcHHH
Confidence 57999999999999999999998 7999999999999999999999976 99999999999999999999999999
Q ss_pred hHHHHhhchhHHHHHHhcccCCCHHHHHHHHHh-CCCCHHHHhhc---cCcchhhhh----------cccchhhhccCcC
Q 010406 282 LEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNE---DSLTHSQRL----------GLKYFDDIKTRIP 347 (511)
Q Consensus 282 le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~-Gi~tledL~~~---~~L~~~q~~----------Glk~~~d~~~~i~ 347 (511)
++.+..+++. .+.+|++|+|||||+|.+||.. |++|++||+.+ +.|+++++| ||++|+++.+|||
T Consensus 81 ~~~~~~~~~~-~~~~l~~v~GvGpk~A~~~~~~lg~~~~~~l~~a~~~~~l~~~~GiG~k~a~~i~~~l~~~~~~~~r~~ 159 (575)
T 3b0x_A 81 HEELSRKVPR-GVLEVMEVPGVGPKTARLLYEGLGIDSLEKLKAALDRGDLTRLKGFGPKRAERIREGLALAQAAGKRRP 159 (575)
T ss_dssp HHHHHHHSCH-HHHHHHTSTTTCHHHHHHHHHTSCCCSHHHHHHHHHHTGGGGSTTCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred HhhhhhhhHH-HHHHHhcCCCcCHHHHHHHHHhcCCCCHHHHHHHHHcCCcccCCCCCccHHHHHHHHHHHHHHhcccee
Confidence 9999988764 6777779999999999999997 99999999863 457766655 6999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCeEEEEccceeecCCccCCeeEEEecCCcchhhhHHHHHHHHHHHhcceeeeeEe-----
Q 010406 348 RHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIF----- 422 (511)
Q Consensus 348 r~ea~~~~~iv~~~~~~~~p~~~v~~~Gs~RRgke~~gDvDiLit~~~~~~~~~~l~~~v~~l~~~g~l~~~l~~----- 422 (511)
|+||+++.+.|.+.+..+.|..+|++||||||||++||||||||||+++.. +++.|.+.+++.+.+..
T Consensus 160 ~~e~~~~~~~i~~~l~~~~~~~~~~~~Gs~RRgke~~gDiD~li~~~~~~~-------v~~~l~~~~~~~~~~~~g~~k~ 232 (575)
T 3b0x_A 160 LGAVLSLARSLLEAIRALPGVERAELCGSARRYKDTVGDLDFLVASREGER-------AVEGFVRLPQVKEVYAKGKERA 232 (575)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCCEEEECHHHHTTCSEESSEEEEEECSSHHH-------HHHHHHTSTTEEEEEEECSSEE
T ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEccccccCCCccCCeEEEEeCCCHHH-------HHHHHHhCcchhhHhhcCCCce
Confidence 999999988888887777777799999999999999999999999998764 66677777887653321
Q ss_pred ec-------ccccccCcchHHHHHHHhcCcHHHHHHHHHHHHHcCCccCCCCCcccccCCCCcccccccccCCCCCHHHH
Q 010406 423 ST-------HSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEV 495 (511)
Q Consensus 423 ~~-------~~~~~~p~~~~~~aLl~~TGS~~fnr~lR~~A~~kg~~L~~~gL~~~~~~~~~~~~~~~~~~~~~~tEedI 495 (511)
+. .+..+||+++||+||+|||||++|||+||++|++|||+||+||||+.. ..+++.+|++|
T Consensus 233 ~~~~~~~~rvDl~~~~~~~~~~al~~~TGs~~~n~~lR~~A~~~g~~l~~~gl~~~~------------~~~~~~~E~~i 300 (575)
T 3b0x_A 233 TVFLKNGLQVDLRVVPPESYGAGLQYLTGSAAHSIRLRALAQEKGLKLSEYGVFRGE------------KRIAGETEEEV 300 (575)
T ss_dssp EEEETTSCEEEEEEECGGGHHHHHHHHHCCHHHHHHHHHHHHHTTCEEETTEEEETT------------EEEECSSHHHH
T ss_pred EEEccCCcEEEEEEECHHHHHHHHHHhhCCHHHHHHHHHHHHHcCCCcchhhccCCC------------cccCCCCHHHH
Confidence 11 133499999999999999999999999999999999999999999421 16889999999
Q ss_pred HhhcCCCCCCCCCcC
Q 010406 496 FDFLGFPWLEPHERN 510 (511)
Q Consensus 496 f~~LGL~yipPe~Rn 510 (511)
|+.+||+||||++|+
T Consensus 301 f~~lgl~~i~p~~R~ 315 (575)
T 3b0x_A 301 YAALGLPWIPPPLRE 315 (575)
T ss_dssp HHHTTCCCCCGGGCS
T ss_pred HHHcCCCCCCHHHcC
Confidence 999999999999997
No 6
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=100.00 E-value=3e-57 Score=497.55 Aligned_cols=274 Identities=18% Similarity=0.251 Sum_probs=229.5
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCCC-hhHHHHHHHHHHHhcCCccccchhh--hcCCCCCCHHHHHHHHHHHHhCCchhhH
Q 010406 207 PDLNKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIESADQ--VKGLPGIGKSMQDHIQEIVTTGKLSKLE 283 (511)
Q Consensus 207 ~~~N~~ia~~l~~la~~~e~~g~~-~r~~aY~rAa~~l~~l~~~i~s~~~--l~~lpgIG~~ia~kI~Eil~tG~~~~le 283 (511)
.++|++|+++|++||++|++.|++ +|++||++|+++|+++|.+|++..+ +..|||||++++.+|.|++++|.+..++
T Consensus 7 ~~~N~~i~~~l~~~a~~~e~~g~~~~r~~ay~~Aa~~i~~l~~~i~~~~~~~~~~lp~iG~~~~~~i~~~v~~g~~~~~~ 86 (578)
T 2w9m_A 7 APSRHRLVHALERTADLLDILGGEDFKSRAYRSAARSLEELNEETPELLAREFTGIPKVGKGIAAELSDFARSGTFAPLE 86 (578)
T ss_dssp -CCHHHHHHHHHHHHHHHHHC---CCSHHHHHHHHHHHHSCC----------CCSSTTCCHHHHHHHHHHHHHSSCHHHH
T ss_pred CCChHHHHHHHHHHHHHHHhhCCCcccHHHHHHHHHHHHhCchhhhhhhHhhhhhcCCCChhHHHHHHHHHcCChHHHHH
Confidence 457999999999999999999988 7999999999999999999999977 9999999999999999999999999999
Q ss_pred HHHhhchhHHHHHHhcccCCCHHHHHHHHHhCCCCHHHHhhc---cCcch--------hhhh--cccchhhhccCcCHHH
Q 010406 284 HFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE---DSLTH--------SQRL--GLKYFDDIKTRIPRHE 350 (511)
Q Consensus 284 ~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~Gi~tledL~~~---~~L~~--------~q~~--Glk~~~d~~~~i~r~e 350 (511)
.+..+++. .+..|++|+|||||+|++||+.||+|++||+++ ++|++ +|++ |+++|+++.+||||+|
T Consensus 87 ~~~~~~~~-~~~~L~~v~GVGpk~A~~i~~~G~~s~edL~~a~~~~~L~~~~GiG~Ktaq~I~~~l~~~~~~~~r~~~~e 165 (578)
T 2w9m_A 87 AAAGQLPP-GLLDLLGVRGLGPKKIRSLWLAGIDSLERLREAAESGELAGLKGFGAKSAATILENVVFLFEARQRQSLRA 165 (578)
T ss_dssp HHHHHSCH-HHHHHTTSTTCCHHHHHHHHHTTCCSHHHHHHHHHHTTTTTSTTCCHHHHHHHHHHHHHHHHHCSSEEHHH
T ss_pred HHhhhhHH-HHHHHhCCCCcCHHHHHHHHHcCCCCHHHHHHHHhhCccccCCCCCHHHHHHHHHHHHHHHhhcCCeeHHH
Confidence 99988865 666777999999999999999999999999964 57887 5666 8999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCeEEEEccceeecCCccCCeeEEEecCCcchhhhHHHHHHHHHHHhcceee--e----eEeec
Q 010406 351 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLRE--D----LIFST 424 (511)
Q Consensus 351 a~~~~~iv~~~~~~~~p~~~v~~~Gs~RRgke~~gDvDiLit~~~~~~~~~~l~~~v~~l~~~g~l~~--~----l~~~~ 424 (511)
|+++.+.|.+.+..+ + |++||||||||++|||||||||+ ++..+ |.+.++++. + ..+..
T Consensus 166 ~~~~~~~i~~~l~~~-~---~~~~Gs~RR~~e~~gDiD~li~~-~~~~v----------l~~~~~v~~~g~~k~~~~~~~ 230 (578)
T 2w9m_A 166 GLAVAEELAGALTDL-S---PAPAGDVRRGLETVRAAELTVTG-TPDDV----------LARLPELTVQGDGVLSGDYEG 230 (578)
T ss_dssp HHHHHHHHHHHTGGG-C---CEECHHHHHTCSEESSEEEEEES-CHHHH----------HHHCTTCEEC---CEEEEETT
T ss_pred HHHHHHHHHHHHHhC-C---CEEecccccCCCccCCEEEEEec-ChHHH----------HhcCccceecCCceEEEEECC
Confidence 999988888877654 3 89999999999999999999999 76542 455555541 1 11110
Q ss_pred --ccccccCcchHHHHHHHhcCcHHHH-HHHHHHHHHcCCccCCCCCcccccCCCCcccccccccCCCCCHHHHHhhcCC
Q 010406 425 --HSEEVYPRDIYAFGLIAWTGNDVLN-RRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGF 501 (511)
Q Consensus 425 --~~~~~~p~~~~~~aLl~~TGS~~fn-r~lR~~A~~kg~~L~~~gL~~~~~~~~~~~~~~~~~~~~~~tEedIf~~LGL 501 (511)
.+..+||+++||+||+|||| .|| |+||++|++|||+||+||||+.. ..+++.+|++||++|||
T Consensus 231 ~~vDl~~~~~~~~~~al~~~TG--~~n~~~lr~~A~~~g~~l~~~gl~~~~------------~~~~~~~E~~if~~lgl 296 (578)
T 2w9m_A 231 VPVEIACAPAEARGALDLLRSG--EHFAGQVQAAAQARGFTLTAGGLSRGD------------EVLPTPTEAVVFHALDL 296 (578)
T ss_dssp EEEEEEEECTTTHHHHHHHTSC--HHHHHHHHHHHHTTTCEEETTEEEETT------------EEECCCSHHHHHHHTTC
T ss_pred EEEEEEEECHHHHHHHHHHHhh--hhHHHHHHHHHHHcCCCcChhhccCCC------------ccCCCCCHHHHHHHcCC
Confidence 23459999999999999999 888 99999999999999999999421 16889999999999999
Q ss_pred CCCCCCCcC
Q 010406 502 PWLEPHERN 510 (511)
Q Consensus 502 ~yipPe~Rn 510 (511)
||||||+||
T Consensus 297 ~~i~Pe~Re 305 (578)
T 2w9m_A 297 PFRPAEYRE 305 (578)
T ss_dssp CCCCGGGCS
T ss_pred CCCChhhcC
Confidence 999999997
No 7
>1jaj_A DNA polymerase beta-like protein; CIS peptide, viral protein; HET: DNA; NMR {African swine fever virus} SCOP: d.218.1.2 PDB: 1jqr_A*
Probab=100.00 E-value=3.6e-39 Score=300.80 Aligned_cols=151 Identities=25% Similarity=0.343 Sum_probs=127.1
Q ss_pred hcccchhhhccCcCHHHHHHHHHHHHHHhhhcCCCeEEEEccceeecCCccCCeeEEEecCCcchhhhHHHHHHHHHHH-
Q 010406 334 LGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKE- 412 (511)
Q Consensus 334 ~Glk~~~d~~~~i~r~ea~~~~~iv~~~~~~~~p~~~v~~~Gs~RRgke~~gDvDiLit~~~~~~~~~~l~~~v~~l~~- 412 (511)
+|+++++++.+++.++.+.++ . -.||+++++||||||||++||||||||||+++. ++++.|.+
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~-------i--k~~g~~v~iaGS~RRgket~gDiDiLit~~~~~-------~v~~~L~~~ 69 (174)
T 1jaj_A 6 QGKKIVNHLRSRLAFEYNGQL-------I--KILSKNIVAVGSLRREEKMLNDVDLLIIVPEKK-------LLKHVLPNI 69 (174)
T ss_dssp HHHHHHHHHHHSEEEEETTEE-------E--EECTTTEEEEEHHHHTCSEECCEEEEEEESSHH-------HHHTSSSEE
T ss_pred hHHHHHHHHHhhhhHHhhccc-------c--cCCCcEEEEeccccCCCCCCCCEEEEEecCCHH-------HHHHHHHhc
Confidence 699999999999998777442 1 158999999999999999999999999999864 47777888
Q ss_pred -hccee-eeeEe---------e---c---ccccccCcchHHHHHHHhcCcHHHHHHHHHHHHHcCCccCCCCCcccccCC
Q 010406 413 -MKFLR-EDLIF---------S---T---HSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGS 475 (511)
Q Consensus 413 -~g~l~-~~l~~---------~---~---~~~~~~p~~~~~~aLl~~TGS~~fnr~lR~~A~~kg~~L~~~gL~~~~~~~ 475 (511)
.|+++ +.+.. . . .+..+||+++|++||+|||||++||+.||++|++|||+||+||||+..
T Consensus 70 ~~~~v~~~~l~~g~~k~~~~l~~~~~~~rVDl~~vp~~~fg~ALl~fTGSk~hn~~lR~~A~~kG~~L~e~Gl~~~~--- 146 (174)
T 1jaj_A 70 RIKGLSFSVKVCGERKCVLFIEWEKKTYQLDLFTALAEEKPYAIFHFTGPVSYLIRIRAALKKKNYKLNQYGLFKNQ--- 146 (174)
T ss_dssp EESSCEEEEEEETTTEEEEEEESSSCCEEEEEEEEETTCHHHHHHHHHSCHHHHHHHHHHHHHTTEEEETTEEEETT---
T ss_pred cCCceeHhHeecCCCeEEEEeCCCCCceEEEEEEeCHHHHHHHHHHhHCCHHHHHHHHHHHHHcCCCcCccccccCC---
Confidence 88887 54321 1 0 123489999999999999999999999999999999999999999532
Q ss_pred CCcccccccccCCCCCHHHHHhhcCCCCCCCCCcC
Q 010406 476 GGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 510 (511)
Q Consensus 476 ~~~~~~~~~~~~~~~tEedIf~~LGL~yipPe~Rn 510 (511)
.+..+++++|+|||++|||||||||+|.
T Consensus 147 -------~g~~i~~~sE~~If~~LGL~yipPelR~ 174 (174)
T 1jaj_A 147 -------TLVPLKITTEKELIKELGFTYRIPKKRL 174 (174)
T ss_dssp -------EEECCCCSSHHHHHHHHTSCCCCGGGCC
T ss_pred -------CCcccCCCCHHHHHHHcCCCCcCccccC
Confidence 1247899999999999999999999994
No 8
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=99.93 E-value=4.4e-26 Score=200.44 Aligned_cols=98 Identities=19% Similarity=0.240 Sum_probs=86.3
Q ss_pred CCCCCCCCCCeEEEEecCCCcchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChH--HHHHH--HHHhhh--ccCCcc
Q 010406 12 ALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEA--LLQQV--SKQHLA--RFKGSV 85 (511)
Q Consensus 12 ~~~~~~~F~g~~iy~~~~~~g~~r~~~l~~~~~~~Gg~v~~~~s~~VTHVV~~~~s~--~~~~l--~~~~~~--~~~~~i 85 (511)
.+.++.+|++|+|||++.+||.+|++||+++|+++||+|++.++++|||||+++.+. +++|| +...++ ...++|
T Consensus 4 ~~~~~~~F~~v~iyive~kmG~sRr~fL~~la~~kGf~v~~~~S~~VTHVV~E~~s~~~~~~~L~~~~~~l~~~~~~~~l 83 (133)
T 2dun_A 4 GSSGSTRFPGVAIYLVEPRMGRSRRAFLTGLARSKGFRVLDACSSEATHVVMEETSAEEAVSWQERRMAAAPPGCTPPAL 83 (133)
T ss_dssp CCCSSCSEEEEEEEECHHHHCSHHHHHHHHHHHHHTEEECSSCCTTCCEEEESSCCHHHHHHHHHHHHHHSCTTCCCCEE
T ss_pred CCCCccccCccEEEEecCCcCHHHHHHHHHHHHhcCCEeccccCCCceEEEecCCCHHHHHHHHHHhhcccCcCCCCcEE
Confidence 567789999999999999999999999999999999999999999999999988764 78899 666554 125899
Q ss_pred cccchHHHHHhcCCCCCccccccc
Q 010406 86 IRYQWLEDSLRLGEKVSEDLYRIK 109 (511)
Q Consensus 86 V~~~Wl~ecik~g~lvde~~y~l~ 109 (511)
|+++||+|||++|+|||++.|.+.
T Consensus 84 LdisWltecm~~g~pV~~e~~~~l 107 (133)
T 2dun_A 84 LDISWLTESLGAGQPVPVECRHRL 107 (133)
T ss_dssp EEHHHHHHHHHHTSCCCCCTTTSC
T ss_pred eccHHHHHHHhcCCcCCcccceEe
Confidence 999999999999999998555443
No 9
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=1.4e-23 Score=183.56 Aligned_cols=101 Identities=21% Similarity=0.300 Sum_probs=87.0
Q ss_pred CCCCCCCCCCCCeEEEEecCCCcchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChH--HHHHHHHHhhhc-cCCccc
Q 010406 10 TPALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEA--LLQQVSKQHLAR-FKGSVI 86 (511)
Q Consensus 10 ~~~~~~~~~F~g~~iy~~~~~~g~~r~~~l~~~~~~~Gg~v~~~~s~~VTHVV~~~~s~--~~~~l~~~~~~~-~~~~iV 86 (511)
+++++|.++|+||+|||++.+|+.+|++||+++++++||+|++.++++|||||+++.+. ++++++..++.. ..++||
T Consensus 12 ~~~~~p~~~F~g~~iy~v~~~~g~~R~~~l~~l~r~~G~~V~~~ls~~VTHVVve~~~~~e~~~~l~~~~l~~~~~~~lv 91 (120)
T 2coe_A 12 MASSPQDIKFQDLVVFILEKKMGTTRRALLMELARRKGFRVENELSDSVTHIVAENNSGSDVLEWLQAQKVQVSSQPELL 91 (120)
T ss_dssp SSSCSSCCSCTTCEEEEECTTTCHHHHHHHHHHHHHHTCEECSSCCTTCCEEEESSCCHHHHHHHHHHCCCCCSSCCEEE
T ss_pred CCCCCcccccCCeEEEEeecccchHHHHHHHHHHHHcCCEEeeccCCCcCEEEecCCCHHHHHHHHhccccccccccEEe
Confidence 45788899999999999999999999999999999999999999999999999986654 566776554443 258999
Q ss_pred ccchHHHHHhcCCCCCccc-ccccc
Q 010406 87 RYQWLEDSLRLGEKVSEDL-YRIKL 110 (511)
Q Consensus 87 ~~~Wl~ecik~g~lvde~~-y~l~~ 110 (511)
+++||+|||++|++|||++ |.|.+
T Consensus 92 ~i~Wl~esmk~g~lv~ee~~~~l~~ 116 (120)
T 2coe_A 92 DVSWLIECIGAGKPVEMTGKHQLSG 116 (120)
T ss_dssp EHHHHHHHHHTTSCCCCSSSSBCCC
T ss_pred ecHHHHHHHHcCCccCcccceEecc
Confidence 9999999999999999855 55543
No 10
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-21 Score=169.00 Aligned_cols=98 Identities=17% Similarity=0.338 Sum_probs=84.7
Q ss_pred CCCCCCCCCeEEEEecCCCcchHHHHHHHHHHhcCCEEEeecCCCccEEEEcC-Ch--HHHHHHHHHhhhccCCcccccc
Q 010406 13 LDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMD-LE--ALLQQVSKQHLARFKGSVIRYQ 89 (511)
Q Consensus 13 ~~~~~~F~g~~iy~~~~~~g~~r~~~l~~~~~~~Gg~v~~~~s~~VTHVV~~~-~s--~~~~~l~~~~~~~~~~~iV~~~ 89 (511)
..+.++|+||++||++.+++..|++++.++++++||+|++.++++|||||+++ .+ ..+++++...++ ..++||+.+
T Consensus 6 ~~~~~~F~g~~v~~~p~~~~~~r~~i~~~~a~~~Ga~v~~~~~~~vTHVVvd~~~s~~~~l~~l~~~~l~-~~~~iV~~~ 84 (106)
T 2jw5_A 6 EEAEEWLSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQGPGVTHIVVDEGMDYERALRLLRLPQLP-PGAQLVKSA 84 (106)
T ss_dssp CCGGGCGGGSCCCBCTTTCCSSSTTHHHHHHHHTTCCCCSTTCTTCCEEEECSSSCHHHHHHHTTCSSCC-SSCEEEEHH
T ss_pred ccCcCEeCCeEEEEEecCCchHHHHHHHHHHHHcCCEEeeccCCCccEEEEcCCCCHHHHHHHHhhcccC-CCcEEecCc
Confidence 45789999999999999999999999999999999999999999999999974 32 356777653333 257999999
Q ss_pred hHHHHHhcCCCCCccccccccC
Q 010406 90 WLEDSLRLGEKVSEDLYRIKLD 111 (511)
Q Consensus 90 Wl~ecik~g~lvde~~y~l~~~ 111 (511)
|++|||++|++|||++|.+.++
T Consensus 85 Wv~dci~~~~llde~~y~~~~~ 106 (106)
T 2jw5_A 85 WLSLCLQERRLVDVAGFSIFIP 106 (106)
T ss_dssp HHHHHHHTCSCCCGGGTBCSCC
T ss_pred hHHHHHhcCcccCcccccccCC
Confidence 9999999999999999988753
No 11
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*
Probab=99.60 E-value=2.3e-15 Score=129.51 Aligned_cols=91 Identities=21% Similarity=0.272 Sum_probs=73.3
Q ss_pred CCCCCeEEEEecCC-Ccc-hHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCCcccccchHHHH
Q 010406 17 GIFAGMRVFLVEKG-VQN-RRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDS 94 (511)
Q Consensus 17 ~~F~g~~iy~~~~~-~g~-~r~~~l~~~~~~~Gg~v~~~~s~~VTHVV~~~~s~~~~~l~~~~~~~~~~~iV~~~Wl~ec 94 (511)
.+|+||+|||.... .|. .|.+.+.++++++||+|++.++.+|||||+.+.... ++.++. ..+++||+++||+||
T Consensus 6 p~f~g~vvyvd~~~~~g~~~~s~~l~~~l~~~GA~v~~~l~~~vTHvV~~~~~~~-~~~~A~---~~~i~iV~~~Wv~~C 81 (107)
T 3pa6_A 6 PILKDVVAYVEVWSSNGTENYSKTFTTQLVDMGAKVSKTFNKQVTHVIFKDGYQS-TWDKAQ---KRGVKLVSVLWVEKC 81 (107)
T ss_dssp CTTTTCEEEEEEBCTTSCCBCHHHHHHHHHHTTCEECSSCCTTCCEEEEESCCHH-HHHHHH---HHTCEEECHHHHHHH
T ss_pred cccCCEEEEEeccCCCChhhHHHHHHHHHHHcCCEEecccCCCccEEEEeCCCCh-HHHHHh---cCCCEEECHHHHHHH
Confidence 49999999997663 454 466889999999999999999999999999765421 121211 126799999999999
Q ss_pred HhcCCCCCccccccccC
Q 010406 95 LRLGEKVSEDLYRIKLD 111 (511)
Q Consensus 95 ik~g~lvde~~y~l~~~ 111 (511)
+++|++|||++|.+..+
T Consensus 82 ~~~~~~vdE~~Y~i~~~ 98 (107)
T 3pa6_A 82 RTAGAHIDESLFPAANM 98 (107)
T ss_dssp HHHTSCCCGGGSBCCCT
T ss_pred HHhCccCChhcccCCCC
Confidence 99999999999998644
No 12
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=99.58 E-value=3.4e-15 Score=133.25 Aligned_cols=94 Identities=23% Similarity=0.377 Sum_probs=74.5
Q ss_pred CCCCCCCCCCeEEEEecCCCcchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCCcccccchH
Q 010406 12 ALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWL 91 (511)
Q Consensus 12 ~~~~~~~F~g~~iy~~~~~~g~~r~~~l~~~~~~~Gg~v~~~~s~~VTHVV~~~~s~~~~~l~~~~~~~~~~~iV~~~Wl 91 (511)
...+..+|+||+|||.+. ...+++.|+++++++||+|++.+++.|||||+.+....++..... ....++||+++||
T Consensus 34 ~~~~~~lF~g~~i~i~G~--~~~~~~~L~~~i~~~Gg~v~~~l~~~vTHvI~~~~~~~~~~~~~~--~~~~~~iV~~~Wv 109 (132)
T 1wf6_A 34 FQAPEDLLDGCRIYLCGF--SGRKLDKLRRLINSGGGVRFNQLNEDVTHVIVGDYDDELKQFWNK--SAHRPHVVGAKWL 109 (132)
T ss_dssp CCCCTTTTTTCEEEEESC--CSHHHHHHHHHHHHTTCEEESSCCSSCCEEEESSCCSHHHHHHHH--SCCCCCEEEHHHH
T ss_pred ccccccccCCEEEEEECC--ChHHHHHHHHHHHHCCCEEeCcCCCCCeEEEECCchHHHHHHHHh--hCCCCeEechHHH
Confidence 334568999999999853 456779999999999999999999999999997643222221111 1235799999999
Q ss_pred HHHHhcCCCCCccccccc
Q 010406 92 EDSLRLGEKVSEDLYRIK 109 (511)
Q Consensus 92 ~ecik~g~lvde~~y~l~ 109 (511)
.|||++|++|||+.|.+.
T Consensus 110 ~dsi~~~~ll~e~~Y~~~ 127 (132)
T 1wf6_A 110 LECFSKGYMLSEEPYIHS 127 (132)
T ss_dssp HHHHHHSSCCCSGGGBCC
T ss_pred HHHHHcCCcCCHhhccCC
Confidence 999999999999999774
No 13
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=99.54 E-value=5.8e-17 Score=158.37 Aligned_cols=166 Identities=17% Similarity=0.133 Sum_probs=67.9
Q ss_pred HHHhcccCCCHHHHHHHHHhCCCCHHHHhhc--cCcchhhhhcccchhhhcc----------C---cC-HHHHHHH-HHH
Q 010406 295 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKT----------R---IP-RHEVEQM-ERL 357 (511)
Q Consensus 295 ~lf~~I~GvGpktA~~l~~~Gi~tledL~~~--~~L~~~q~~Glk~~~d~~~----------~---i~-r~ea~~~-~~i 357 (511)
..|.+|+||||++|++|++.||.|+++|..+ ..|..+.+||.+..+.|.. + ++ ..++..+ +.+
T Consensus 15 ~~L~~IpGIGpk~a~~Ll~~gf~sve~L~~a~~~eL~~v~GIG~ktAe~I~~~l~~~~~~~~r~~~~~~~~~a~~~a~~i 94 (241)
T 1vq8_Y 15 TELTDISGVGPSKAESLREAGFESVEDVRGADQSALADVSGIGNALAARIKADVGGLEVESETEAEVEEEGGEEAPDEDV 94 (241)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHhcCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHhccCCCHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHH
Confidence 3556999999999999999999999999754 3688899999888877764 3 44 4455443 333
Q ss_pred HHHHhhhcCCC-e-EEEEccceeecC---------CccC-CeeEEE----ecCCcchhhhHHHHHHHHHHHhcce-----
Q 010406 358 LQKAGEEVLPE-V-IILCGGSYRRGK---------ASCG-DLDVVI----MHPDRKSHKGFLSKYVKKLKEMKFL----- 416 (511)
Q Consensus 358 v~~~~~~~~p~-~-~v~~~Gs~RRgk---------e~~g-DvDiLi----t~~~~~~~~~~l~~~v~~l~~~g~l----- 416 (511)
+..+. -.|+ + +++++||+||.+ ++++ |+|+++ +...+.-..+ ++...++..+.+
T Consensus 95 ~~~l~--~~~~~~~~~~~ags~RR~~~~~~~~~~~efvr~d~d~~~~~~~~wrkP~g~d~---~vr~~f~g~~~~~~ig~ 169 (241)
T 1vq8_Y 95 ETELQ--ARGLTEKTPDLSDEDARLLTQRHRVGKPQFNRQDHHKKKRVSTSWRKPRGQLS---KQRRGIKGKGDTVEAGF 169 (241)
T ss_dssp -CCEE--ECSCTTCCCCCCHHHHHHHHHHHHHCCCCCCCTTGGGCTTSCSSCCCCCCTTC---TTTTTCTTSCCCCCGGG
T ss_pred HHHHH--hCCCCcCceecChHHHHHHHHhcccCCCCeeccchhheeecccCcCCCCCccH---HHHHHHhCCCCCCcccc
Confidence 33332 2455 4 789999999999 9999 999999 5544441000 011111111111
Q ss_pred ----------e----eeeEeecccccccCcchHHHHHHHhcCcHHHHHHHHHHHHHcCCccCCC
Q 010406 417 ----------R----EDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDT 466 (511)
Q Consensus 417 ----------~----~~l~~~~~~~~~~p~~~~~~aLl~~TGS~~fnr~lR~~A~~kg~~L~~~ 466 (511)
. .-+..+..++++++++.|+++|.|||||+.|| .|+..|.++|+++.+-
T Consensus 170 ~s~~k~r~~lp~G~~~~~v~n~~dL~~l~~~~~~a~i~~~tGskkh~-~i~~~A~~~gikv~n~ 232 (241)
T 1vq8_Y 170 RSPTAVRGKHPSGFEEVRVHNVDDLEGVDGDTEAVRIASKVGARKRE-RIEEEAEDAGIRVLNP 232 (241)
T ss_dssp CCCTTTTTCCTTSCEEEEESSGGGGTTCCTTTEEEEECTTSCHHHHH-HHHHHHHHTTCCBSSC
T ss_pred CCCCceEEECCCCCEeeeccCHhHhhccCcHHHHHHHHHHhccHhHH-HHHHHHHHcCCcccCC
Confidence 0 11112223456889999999999999999999 9999999999998654
No 14
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=99.50 E-value=3.1e-14 Score=141.41 Aligned_cols=93 Identities=24% Similarity=0.309 Sum_probs=74.6
Q ss_pred CCCCCCCCeEEEEecC--------CCcchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCC-hHH--HHHHHHHhhhccC
Q 010406 14 DSNGIFAGMRVFLVEK--------GVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDL-EAL--LQQVSKQHLARFK 82 (511)
Q Consensus 14 ~~~~~F~g~~iy~~~~--------~~g~~r~~~l~~~~~~~Gg~v~~~~s~~VTHVV~~~~-s~~--~~~l~~~~~~~~~ 82 (511)
.+.++|+||+|||... .++..|+++++++++++||+|++.++++|||||+.+. ++. ++.++.. ....
T Consensus 160 ~~~~lF~~~~vy~~~~~~~~~~~~~i~~~~l~~~~~~i~~~GG~v~~~l~~~vTHVVv~~~~~r~~~~~~~~~~--~~~~ 237 (263)
T 3ii6_X 160 SPLSMFRRHTVYLDSYAVINDLSTKNEGTRLAIKALELRFHGAKVVSCLAEGVSHVIIGEDHSRVADFKAFRRT--FKRK 237 (263)
T ss_dssp CGGGTTTTCEEEECCBSSTTCGGGBCCSSHHHHHHHHHHHTTCEEESSCCTTCCEEEECSCCTTHHHHHHHHHT--CSSC
T ss_pred CcchhhCCeEEEEecccccCCcccccchhHHHHHHHHHHccCCEEecCCCCCceEEEECCCCccHHHHHHHHhh--cCCC
Confidence 4678999999999642 3455689999999999999999999999999999753 222 3322221 1236
Q ss_pred CcccccchHHHHHhcCCCCCcccccc
Q 010406 83 GSVIRYQWLEDSLRLGEKVSEDLYRI 108 (511)
Q Consensus 83 ~~iV~~~Wl~ecik~g~lvde~~y~l 108 (511)
++||+++||.|||++|++|||++|.+
T Consensus 238 ~~iV~~~Wv~dci~~~~~l~E~~Y~i 263 (263)
T 3ii6_X 238 FKILKESWVTDSIDKCELQEENQYLI 263 (263)
T ss_dssp CEEEETHHHHHHHHTTSCCCGGGTBC
T ss_pred CEEeChHHHHHHHHcCCcCCHhhCCC
Confidence 89999999999999999999999975
No 15
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=99.49 E-value=4.8e-14 Score=117.08 Aligned_cols=88 Identities=20% Similarity=0.274 Sum_probs=68.6
Q ss_pred CCCCCCCCCeEEEEecCCCcchHHHHHHHHHHhcCCEEEeecC--CCccEEEEcCChHHHHHHHHHhhhccCCcccccch
Q 010406 13 LDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLS--KKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQW 90 (511)
Q Consensus 13 ~~~~~~F~g~~iy~~~~~~g~~r~~~l~~~~~~~Gg~v~~~~s--~~VTHVV~~~~s~~~~~l~~~~~~~~~~~iV~~~W 90 (511)
++...+|+||+|||.+.... . +..|+++++.+||++++.++ +.+||||+.+.... +.. . ..+.+||+++|
T Consensus 2 ~~~~~~f~g~~~~i~g~~~~-~-~~~l~~~i~~~GG~~~~~~~~~~~~THlI~~~~~~~-K~~---~--~~~~~iV~~~W 73 (92)
T 4id3_A 2 SQSSKIFKNCVIYINGYTKP-G-RLQLHEMIVLHGGKFLHYLSSKKTVTHIVASNLPLK-KRI---E--FANYKVVSPDW 73 (92)
T ss_dssp ----CTTTTCEEEECSCCSS-C-HHHHHHHHHHTTCEEESSCCCTTTCCEEECSCCCHH-HHH---H--TTTSCEECTHH
T ss_pred CccccccCCEEEEEeCCCCc-C-HHHHHHHHHHCCCEEEEEecCCCceEEEEecCCCHH-HHH---H--cCCCCEEcccH
Confidence 46678999999999763332 3 46689999999999999998 89999999775432 111 1 13689999999
Q ss_pred HHHHHhcCCCCCcccccc
Q 010406 91 LEDSLRLGEKVSEDLYRI 108 (511)
Q Consensus 91 l~ecik~g~lvde~~y~l 108 (511)
|.||+++|++|||++|.+
T Consensus 74 i~dci~~~~~l~e~~Y~l 91 (92)
T 4id3_A 74 IVDSVKEARLLPWQNYSL 91 (92)
T ss_dssp HHHHHHHTSCCCGGGGBC
T ss_pred HHHHHHcCCcCChhhccc
Confidence 999999999999999986
No 16
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=99.44 E-value=1.9e-13 Score=114.95 Aligned_cols=91 Identities=23% Similarity=0.354 Sum_probs=71.5
Q ss_pred CCCCCCCCCCCeEEEEecCCCcchHHHHHHHHHHhcCCEEEeecC-CCccEEEEcCChHHHHHHHHHhhhccCCcccccc
Q 010406 11 PALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLS-KKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQ 89 (511)
Q Consensus 11 ~~~~~~~~F~g~~iy~~~~~~g~~r~~~l~~~~~~~Gg~v~~~~s-~~VTHVV~~~~s~~~~~l~~~~~~~~~~~iV~~~ 89 (511)
..++...+|+||+||+.+..... ++.|+++++.+||++...++ +.+||||+...+.. +... +. +.+||+++
T Consensus 5 ~~~~~~~lF~g~~~~isg~~~~~--~~~L~~~i~~~GG~~~~~~~~~~~THlI~~~~~~~-k~~~---~~--~~~iV~p~ 76 (97)
T 2ebw_A 5 SSGTSSTIFSGVAIYVNGYTDPS--AEELRKLMMLHGGQYHVYYSRSKTTHIIATNLPNA-KIKE---LK--GEKVIRPE 76 (97)
T ss_dssp CCSCCCCTTTTCEEEECSSCSSC--HHHHHHHHHHTTCEECSSCCSSSCCEEECSCCCTT-HHHH---TS--SSCCBCTH
T ss_pred cCCCCCCCCCCeEEEEeCCCccc--HHHHHHHHHHcCCEEeeecCCCCCEEEEecCCChH-HHHH---hc--CCCEeChH
Confidence 45567789999999996544332 47789999999999998876 68999999765321 1111 11 67899999
Q ss_pred hHHHHHhcCCCCCccccccc
Q 010406 90 WLEDSLRLGEKVSEDLYRIK 109 (511)
Q Consensus 90 Wl~ecik~g~lvde~~y~l~ 109 (511)
||.||+++|++||++.|.+.
T Consensus 77 Wl~dci~~~~~l~~~~Y~l~ 96 (97)
T 2ebw_A 77 WIVESIKAGRLLSYIPYQLY 96 (97)
T ss_dssp HHHHHHHHTSCCCSGGGBSC
T ss_pred HHHHHHHcCCccCchHcEec
Confidence 99999999999999999874
No 17
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=99.39 E-value=2.8e-13 Score=116.26 Aligned_cols=93 Identities=15% Similarity=0.182 Sum_probs=71.6
Q ss_pred CCCCCCCCeEEEEecCCCcchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCCh--HHHHHHHHHhhhccCCcccccchH
Q 010406 14 DSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLE--ALLQQVSKQHLARFKGSVIRYQWL 91 (511)
Q Consensus 14 ~~~~~F~g~~iy~~~~~~g~~r~~~l~~~~~~~Gg~v~~~~s~~VTHVV~~~~s--~~~~~l~~~~~~~~~~~iV~~~Wl 91 (511)
....+|.||+|+|.+.-. ..+..|++++..+||+|...++..|||||+.... ...++.++.. .+.+||+++||
T Consensus 11 ~~~~~l~g~~i~isg~~~--~~r~~l~~li~~~Gg~v~~~~s~~~THlI~~~~~~~~~~K~~~A~~---~gi~IV~~~Wl 85 (107)
T 3l3e_A 11 EAPKPLHKVVVCVSKKLS--KKQSELNGIAASLGADYRRSFDETVTHFIYQGRPNDTNREYKSVKE---RGVHIVSEHWL 85 (107)
T ss_dssp ---CTTTTCEEEECGGGG--GGHHHHHHHHHHTTCEEESSCCTTCCEEECCCCTTCCCHHHHHHHH---TTCEEECHHHH
T ss_pred cccCCCCCeEEEEeCCCh--HhHHHHHHHHHHcCCEEeccccCCceEEEecCCCCCCCHHHHHHHH---CCCeEecHHHH
Confidence 345799999999975532 3457789999999999999999999999994321 1233333322 37899999999
Q ss_pred HHHHhcCCCCCccccccccC
Q 010406 92 EDSLRLGEKVSEDLYRIKLD 111 (511)
Q Consensus 92 ~ecik~g~lvde~~y~l~~~ 111 (511)
.+|+++|++|||+.|.+...
T Consensus 86 ~~c~~~~~~l~e~~Y~~~~~ 105 (107)
T 3l3e_A 86 LDCAQECKHLPESLYPHTYN 105 (107)
T ss_dssp HHHHHHTSCCCGGGCCTTCC
T ss_pred HHHHHhCCCCchhhCCCCCC
Confidence 99999999999999998643
No 18
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=1e-12 Score=116.74 Aligned_cols=96 Identities=17% Similarity=0.245 Sum_probs=75.1
Q ss_pred CCCCCCCCCCCeEEEEecCCCcchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCCcccccch
Q 010406 11 PALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQW 90 (511)
Q Consensus 11 ~~~~~~~~F~g~~iy~~~~~~g~~r~~~l~~~~~~~Gg~v~~~~s~~VTHVV~~~~s~~~~~l~~~~~~~~~~~iV~~~W 90 (511)
...+...+|.||+|+|.+.. +.. +..|++++..+||+|...++..+||||+.+.. ..++.++.. .+++||+.+|
T Consensus 15 ~~~~~~~~f~g~~i~itG~~-~~~-r~~l~~~i~~~Gg~v~~~~s~~~ThLI~~~~~-~~K~~~A~~---~gi~IV~~~W 88 (129)
T 2d8m_A 15 GPEELGKILQGVVVVLSGFQ-NPF-RSELRDKALELGAKYRPDWTRDSTHLICAFAN-TPKYSQVLG---LGGRIVRKEW 88 (129)
T ss_dssp CHHHHTTTSTTEEEEEESCC-TTH-HHHHHHHHHHTTEEEESSCCTTCCEEEESSSS-CHHHHHHHH---HTCEEEETHH
T ss_pred cCCCccccCCCeEEEEeCCC-cHH-HHHHHHHHHHcCCEEeCCcCCCCeEEEecCCC-ChHHHHHHH---CCCcEecHHH
Confidence 34445578999999997654 333 46788999999999999999999999997543 223333222 3789999999
Q ss_pred HHHHHhcCCCCCccccccccCC
Q 010406 91 LEDSLRLGEKVSEDLYRIKLDP 112 (511)
Q Consensus 91 l~ecik~g~lvde~~y~l~~~~ 112 (511)
|.+|+++|++|||+.|.+..++
T Consensus 89 l~d~~~~~~~l~e~~Y~l~~~~ 110 (129)
T 2d8m_A 89 VLDCHRMRRRLPSQRYLMAGPG 110 (129)
T ss_dssp HHHHHHTTSCCCGGGGBCSSSS
T ss_pred HHHHHHhCCcCChHhcccCCCC
Confidence 9999999999999999997543
No 19
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.32 E-value=6.3e-13 Score=114.69 Aligned_cols=87 Identities=11% Similarity=0.165 Sum_probs=69.8
Q ss_pred CCCCCeEEEEecCCCcchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCCcccccchHHHHHh
Q 010406 17 GIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLR 96 (511)
Q Consensus 17 ~~F~g~~iy~~~~~~g~~r~~~l~~~~~~~Gg~v~~~~s~~VTHVV~~~~s~~~~~l~~~~~~~~~~~iV~~~Wl~ecik 96 (511)
.+|.||+|+|.+ +....+..+++++.++||++...++..+||||+.+.... + .......+.+||+.+||.||++
T Consensus 11 ~~F~g~~i~~sg--~~~~~r~~l~~~i~~~GG~~~~~~~~~~THLV~~~~~~~-K---~~~a~~~~i~IV~~~Wl~dsi~ 84 (109)
T 2cou_A 11 PPFQDCILSFLG--FSDEEKHSMEEMTEMQGGSYLPVGDERCTHLIVEENTVK-D---LPFEPSKKLFVVKQEWFWGSIQ 84 (109)
T ss_dssp CTTTTCBEEEES--SCHHHHHHHHHHHHHHTCBCCCTTCTTCSEEEECTTTCS-S---CSSCCCTTSEEECHHHHHHHHH
T ss_pred CcCCCeEEEecC--CCHHHHHHHHHHHHHcCCEEecccCCCccEEEEeCCccH-H---HHHHHHCCCeEecHHHHHHHHH
Confidence 589999999954 544456777899999999999999999999999754311 1 1111234689999999999999
Q ss_pred cCCCCCccccccc
Q 010406 97 LGEKVSEDLYRIK 109 (511)
Q Consensus 97 ~g~lvde~~y~l~ 109 (511)
.|+++||+.|.+.
T Consensus 85 ~g~~ldE~~Y~~~ 97 (109)
T 2cou_A 85 MDARAGETMYLYE 97 (109)
T ss_dssp TTSCCCGGGTBCC
T ss_pred cCCcCChhccCCC
Confidence 9999999999885
No 20
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=99.27 E-value=1.1e-11 Score=105.73 Aligned_cols=90 Identities=12% Similarity=0.237 Sum_probs=71.7
Q ss_pred CCCCCCeEEEEecCCCcchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCC-hHHHHHHHHHhhhccCCcccccchHHHH
Q 010406 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDL-EALLQQVSKQHLARFKGSVIRYQWLEDS 94 (511)
Q Consensus 16 ~~~F~g~~iy~~~~~~g~~r~~~l~~~~~~~Gg~v~~~~s~~VTHVV~~~~-s~~~~~l~~~~~~~~~~~iV~~~Wl~ec 94 (511)
..+|.||++||...... ..+..+.+++..+||.|++.+++.|||||++.. +..++... .......+|+++||.+|
T Consensus 5 pd~F~g~~f~l~~~~p~-~~r~~l~ryiia~GG~v~~~~~~~vTHvIt~~~~d~~~~~a~---~~~p~~~~V~P~WI~~C 80 (104)
T 3pc6_A 5 PDFFEGKHFFLYGEFPG-DERRRLIRYVTAFNGELEDYMNERVQFVITAQEWDPNFEEAL---MENPSLAFVRPRWIYSC 80 (104)
T ss_dssp CCTTTTCEEEEESCCST-THHHHHHHHHHHTTCEECSSCCTTCCEEEESSCCCHHHHHHH---TTCTTCEEECHHHHHHH
T ss_pred chhhCCeEEEEcCCCcH-HHHHHHHHHHHHcCCEEEcccCCCceEEEeCCCCChhHHHHh---hhCCCCeEEccHHHHHH
Confidence 46999999999776533 345778899999999999999999999999754 23333222 12235789999999999
Q ss_pred HhcCCCCCccccccc
Q 010406 95 LRLGEKVSEDLYRIK 109 (511)
Q Consensus 95 ik~g~lvde~~y~l~ 109 (511)
++.+++|+++.|.+.
T Consensus 81 i~~~klvp~~~y~~~ 95 (104)
T 3pc6_A 81 NEKQKLLPHQLYGVV 95 (104)
T ss_dssp HHHTSCCCGGGGBCC
T ss_pred HhcCccCCcccceec
Confidence 999999999999885
No 21
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=99.26 E-value=2.9e-12 Score=110.91 Aligned_cols=88 Identities=13% Similarity=0.160 Sum_probs=71.8
Q ss_pred CCCCCeEEEEecCCCcchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCCcccccchHHHHHh
Q 010406 17 GIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLR 96 (511)
Q Consensus 17 ~~F~g~~iy~~~~~~g~~r~~~l~~~~~~~Gg~v~~~~s~~VTHVV~~~~s~~~~~l~~~~~~~~~~~iV~~~Wl~ecik 96 (511)
.+|.||+|+|. |+....+..+++++.++||.+...++..+||+|+.+.+.. ++ .....++.+||+.+||.||++
T Consensus 20 p~F~g~~Ic~s--Gf~~~er~~l~~~i~~~GG~~~~~l~~~cTHLV~~~~~~~-K~---~~A~~~~i~IVs~eWl~dsi~ 93 (112)
T 3l46_A 20 PPFQDCILSFL--GFSDEEKTNMEEMTEMQGGKYLPLGDERCTHLVVEENIVK-DL---PFEPSKKLYVVKQEWFWGSIQ 93 (112)
T ss_dssp CTTTTCEECEE--SCCHHHHHHHHHHHHHTTCEECCTTCTTCSEEEECTTTBS-SC---SSCCCSSCEEEEHHHHHHHHH
T ss_pred CccCCeEEEEe--CCCHHHHHHHHHHHHHcCCEECcccCCCceEEEecCCchh-hH---HHHHHCCeeEecHHHHHHHHH
Confidence 58999999995 4554556778999999999999999999999999765422 11 112234789999999999999
Q ss_pred cCCCCCcccccccc
Q 010406 97 LGEKVSEDLYRIKL 110 (511)
Q Consensus 97 ~g~lvde~~y~l~~ 110 (511)
.|.++||..|.+..
T Consensus 94 ~g~~ldE~~Y~~~~ 107 (112)
T 3l46_A 94 MDARAGETMYLYEK 107 (112)
T ss_dssp HTSCCCGGGSBCCC
T ss_pred cCCccChhhceecc
Confidence 99999999999953
No 22
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=5.3e-11 Score=100.98 Aligned_cols=84 Identities=15% Similarity=0.215 Sum_probs=65.4
Q ss_pred CCCCCCCCCCeEEEEecCCCcchHHHHHHHHHHhcCCEEEee-----------cCCCccEEEEcCChHHHHHHHHHhhhc
Q 010406 12 ALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEK-----------LSKKVTHVLAMDLEALLQQVSKQHLAR 80 (511)
Q Consensus 12 ~~~~~~~F~g~~iy~~~~~~g~~r~~~l~~~~~~~Gg~v~~~-----------~s~~VTHVV~~~~s~~~~~l~~~~~~~ 80 (511)
..+...+|+|+++||.. ...++.|+.+++++||.|+.. .+..|||+|++.... +. ..
T Consensus 6 ~~~~~~LF~g~~F~i~~----e~p~~~le~~I~~~GG~v~~~~~~~~g~~~~~~~~~iTh~I~drp~~-----~~---~~ 73 (100)
T 2ep8_A 6 SGKHKKLFEGLKFFLNR----EVPREALAFIIRSFGGEVSWDKSLCIGATYDVTDSRITHQIVDRPGQ-----QT---SV 73 (100)
T ss_dssp CSCSCCTTSSCEEECCS----SSCHHHHHHHHHHTTCEEECCTTTSSCCCSCTTCTTCCEEECSCTTT-----SC---CB
T ss_pred cCchHHHcCCcEEEEec----CCCHHHHHHHHHHcCCEEEeccccccCcccccCCCceEEEEecccch-----hh---hc
Confidence 45667899999999954 234578889999999999875 246899999975321 10 11
Q ss_pred cCCcccccchHHHHHhcCCCCCccccc
Q 010406 81 FKGSVIRYQWLEDSLRLGEKVSEDLYR 107 (511)
Q Consensus 81 ~~~~iV~~~Wl~ecik~g~lvde~~y~ 107 (511)
.+..+|.++||.||+.++++||+++|.
T Consensus 74 ~~r~~VqPqWV~Dcin~~~lLp~~~Y~ 100 (100)
T 2ep8_A 74 IGRCYVQPQWVFDSVNARLLLPVAEYF 100 (100)
T ss_dssp TTBEEECTHHHHHHHHHTSCCCTTTCC
T ss_pred CCCeEEcchHHHHHHhcCCcCChhhcC
Confidence 245799999999999999999999984
No 23
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=99.13 E-value=1.1e-11 Score=122.63 Aligned_cols=95 Identities=13% Similarity=0.185 Sum_probs=54.0
Q ss_pred CCCCCCCCCeEEEEecCCCcchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCCh--H--HHHHHHHHhhhc-------c
Q 010406 13 LDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLE--A--LLQQVSKQHLAR-------F 81 (511)
Q Consensus 13 ~~~~~~F~g~~iy~~~~~~g~~r~~~l~~~~~~~Gg~v~~~~s~~VTHVV~~~~s--~--~~~~l~~~~~~~-------~ 81 (511)
..+..+|+||+|||.... +..++++++.+++++||+|++.++..+||||+...+ + .++.++.....+ .
T Consensus 155 ~~~~~lF~g~~~yl~~~~-~~~~~~~l~~~i~~~GG~v~~~l~~~t~hVV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (264)
T 1z56_C 155 RFPLFLFSNRIAYVPRRK-ISTEDDIIEMKIKLFGGKITDQQSLCNLIIIPYTDPILRKDCMNEVHEKIKEQIKASDTIP 233 (264)
T ss_dssp CCCCC---------------------CHHHHHHHTTSCCCCSSSCSEEECCCSSTTTHHHHSSHHHHTTTTTTTSSSSCC
T ss_pred cCchhhhCCeEEEEecCC-CchhHHHHHHHHHHcCCEEecccCCCEEEEEeCCCccchHHHHHHHHHHHHhhcccccccC
Confidence 466789999999997652 345678899999999999999998777777775332 2 222233221111 1
Q ss_pred C-CcccccchHHHHHhcCCCCCcccccc
Q 010406 82 K-GSVIRYQWLEDSLRLGEKVSEDLYRI 108 (511)
Q Consensus 82 ~-~~iV~~~Wl~ecik~g~lvde~~y~l 108 (511)
. ++||+++||.+||++|++|||+.|.+
T Consensus 234 ~~~~iV~~~Wv~dci~~~~ll~e~~Y~~ 261 (264)
T 1z56_C 234 KIARVVAPEWVDHSINENCQVPEEDFPV 261 (264)
T ss_dssp CCCEEECTHHHHHHHTTSCCCSSCCC--
T ss_pred CCCEEecHHHHHHHHHcCCcCCHHHcCC
Confidence 2 59999999999999999999999976
No 24
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=99.05 E-value=2.1e-10 Score=109.56 Aligned_cols=84 Identities=17% Similarity=0.247 Sum_probs=69.2
Q ss_pred CeEEEEecCCCcchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCC--hHHHHHHHHHhhhccCCcccccchHHHHHhcC
Q 010406 21 GMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDL--EALLQQVSKQHLARFKGSVIRYQWLEDSLRLG 98 (511)
Q Consensus 21 g~~iy~~~~~~g~~r~~~l~~~~~~~Gg~v~~~~s~~VTHVV~~~~--s~~~~~l~~~~~~~~~~~iV~~~Wl~ecik~g 98 (511)
+++|.+ +++...++..+.++++++||++++.+++.|||||+.+. .+..+.+.+.. .+.+||+++||++|+++|
T Consensus 2 ~~vi~~--sg~~~~~~~~l~~~~~~~G~~~~~~~~~~~THlV~~~~~~~rt~K~l~a~~---~g~~IV~~~Wl~~c~~~~ 76 (210)
T 2nte_A 2 PLVLIG--SGLSSEQQKMLSELAVILKAKKYTEFDSTVTHVVVPGDAVQSTLKCMLGIL---NGCWILKFEWVKACLRRK 76 (210)
T ss_dssp CCEEEE--SSCCHHHHHHHHHHHHHTTCEEESSCCTTCCEEEESSSSCCCSHHHHHHHH---TTCEEEETHHHHHHHHHT
T ss_pred CEEEEE--CCCCHHHHHHHHHHHHHcCCEEeCCCCCCCeEEEEcCCCcchHHHHHHHHh---cCCEEecHHHHHHHHHcC
Confidence 344444 67877778899999999999999999999999999763 34556655322 367899999999999999
Q ss_pred CCCCccccccc
Q 010406 99 EKVSEDLYRIK 109 (511)
Q Consensus 99 ~lvde~~y~l~ 109 (511)
++|||+.|.+.
T Consensus 77 ~~~~e~~y~~~ 87 (210)
T 2nte_A 77 VCEQEEKYEIP 87 (210)
T ss_dssp SCCCGGGTBCT
T ss_pred CcCChhhccCC
Confidence 99999999985
No 25
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=99.02 E-value=2.3e-10 Score=109.07 Aligned_cols=84 Identities=15% Similarity=0.239 Sum_probs=69.1
Q ss_pred CeEEEEecCCCcchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCC-----hHHHHHHHHHhhhccCCcccccchHHHHH
Q 010406 21 GMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDL-----EALLQQVSKQHLARFKGSVIRYQWLEDSL 95 (511)
Q Consensus 21 g~~iy~~~~~~g~~r~~~l~~~~~~~Gg~v~~~~s~~VTHVV~~~~-----s~~~~~l~~~~~~~~~~~iV~~~Wl~eci 95 (511)
++++.+ ++++..++..+.++++.+||.+++.+++.|||||+.+. .+..+++.+.. .+.+||+++||.+|+
T Consensus 4 ~~~~~~--sg~~~~~~~~l~~~~~~~G~~~~~~~~~~~THli~~~~~~~~~~rt~k~~~a~~---~g~~IV~~~Wl~~~~ 78 (214)
T 1t15_A 4 RMSMVV--SGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIA---GGKWVVSYFWVTQSI 78 (214)
T ss_dssp CCEEEE--ESCCHHHHHHHHHHHHHHTCEECSSCCTTCCEEEECBCTTSEECCBHHHHHHHH---TTCEEEETHHHHHHH
T ss_pred cEEEEE--CCCCHHHHHHHHHHHHHhCCEEeCccCCCCcEEEEeCCcccchhhhHHHHHHHh---cCCEEeCHHHHHHHH
Confidence 445544 66777788899999999999999999999999999765 34556555432 367899999999999
Q ss_pred hcCCCCCccccccc
Q 010406 96 RLGEKVSEDLYRIK 109 (511)
Q Consensus 96 k~g~lvde~~y~l~ 109 (511)
++|+++||+.|.+.
T Consensus 79 ~~~~~~~e~~y~~~ 92 (214)
T 1t15_A 79 KERKMLNEHDFEVR 92 (214)
T ss_dssp HTTSCCCGGGGBCC
T ss_pred HCCCcCChHHeEee
Confidence 99999999999986
No 26
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=99.02 E-value=5.6e-10 Score=92.06 Aligned_cols=68 Identities=15% Similarity=0.214 Sum_probs=62.1
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCccccchhhhcCCCCCCHHHHHHHHHHHHh
Q 010406 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT 276 (511)
Q Consensus 208 ~~N~~ia~~l~~la~~~e~~g~~~r~~aY~rAa~~l~~l~~~i~s~~~l~~lpgIG~~ia~kI~Eil~t 276 (511)
..|..|++-|+++++.++-. +..++.+|++|+.+|+++|.+|.+..|+..|+|||++|+++|.|+|..
T Consensus 13 ~~N~lf~~wL~e~~~~a~~r-~~k~~~~Y~KA~~sLk~~P~~i~s~~e~~~L~giG~ki~~~L~e~L~~ 80 (87)
T 2kp7_A 13 CPNPLFVRWLTEWRDEAASR-GRHTRFVFQKALRSLQRYPLPLRSGKEAKILQHFGDRLCRMLDEKLKQ 80 (87)
T ss_dssp SCCCHHHHHHHHHHHHHHHH-TCTTHHHHHHHHHHHHHCCSCCCSHHHHHTCTTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHhCCCCCCCHHHHHHhhcccHHHHHHHHHHHHH
Confidence 45999999999999988844 456789999999999999999999999999999999999999999863
No 27
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=98.99 E-value=4.9e-10 Score=108.15 Aligned_cols=87 Identities=14% Similarity=0.223 Sum_probs=71.8
Q ss_pred CCCCeEEEEecCCCcchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCC-----hHHHHHHHHHhhhccCCcccccchHH
Q 010406 18 IFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDL-----EALLQQVSKQHLARFKGSVIRYQWLE 92 (511)
Q Consensus 18 ~F~g~~iy~~~~~~g~~r~~~l~~~~~~~Gg~v~~~~s~~VTHVV~~~~-----s~~~~~l~~~~~~~~~~~iV~~~Wl~ 92 (511)
-+++++|.+ +++.......+.++++.+||.+++.+++.|||||+... .+..+.+.+.. .+.+||+++||.
T Consensus 4 ~~~~~~i~~--sg~~~~~~~~l~~~~~~~G~~~~~~~~~~~THlI~~~~~~~~~~rt~K~~~a~~---~g~~IV~~~Wl~ 78 (229)
T 1l0b_A 4 AERDISMVV--SGLTPKEVMIVQKFAEKYRLALTDVITEETTHVIIKTDAEFVCERTLKYFLGIA---GGKWIVSYSWVI 78 (229)
T ss_dssp CCCCCEEEE--ESCCHHHHHHHHHHHHHTTCEECSSCCSSCCEEEECBCTTSEECCCHHHHHHHH---TTCEEEETHHHH
T ss_pred CCCCeEEEE--cCCCHHHHHHHHHHHHHcCCEEeCCcCCCCCEEEEcCCccccccccHHHHHHHH---CCCcEecHHHHH
Confidence 468888888 55666667889999999999999999999999999765 23455544322 367899999999
Q ss_pred HHHhcCCCCCccccccc
Q 010406 93 DSLRLGEKVSEDLYRIK 109 (511)
Q Consensus 93 ecik~g~lvde~~y~l~ 109 (511)
+|+++|++|||+.|.+.
T Consensus 79 ~~~~~~~~~~e~~y~~~ 95 (229)
T 1l0b_A 79 KSIQERKLLSVHEFEVK 95 (229)
T ss_dssp HHHTTTSCCCSGGGBCC
T ss_pred HHHHCCCcCChHHeEec
Confidence 99999999999999885
No 28
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=98.91 E-value=1.3e-09 Score=113.07 Aligned_cols=89 Identities=18% Similarity=0.216 Sum_probs=69.3
Q ss_pred CCCCCeEEEEecCCC--cchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCCcccccchHHHH
Q 010406 17 GIFAGMRVFLVEKGV--QNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDS 94 (511)
Q Consensus 17 ~~F~g~~iy~~~~~~--g~~r~~~l~~~~~~~Gg~v~~~~s~~VTHVV~~~~s~~~~~l~~~~~~~~~~~iV~~~Wl~ec 94 (511)
.+|+||+|+|.+... ....+..+.+++..+||+|+.+++++|||||+.... ..+...+... .+++||+++||.+|
T Consensus 281 ~~L~G~~ivfSG~~~~~~~~~~~~l~~l~~~lGa~v~~~vs~~vTHLVa~~~~-t~K~~~A~~~--~~I~IV~~~Wl~~c 357 (372)
T 3ef0_A 281 KVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIR-TEKVKKAVSM--GNIKVVKLNWLTES 357 (372)
T ss_dssp TTSTTCEEEEESSSCTTSCTTTSHHHHHHHHTTCEEESSSSSCCSEEEECSCC-CHHHHHHHHS--SSCCEEEHHHHHHH
T ss_pred hhcCCcEEEEecccCCCcchhHHHHHHHHHHcCCEEeCcCCCCceEEEEcCCC-chHHHHHHhc--CCCEEEcHHHHHHH
Confidence 689999999976632 111235678999999999999999999999997542 2222232221 26799999999999
Q ss_pred HhcCCCCCcccccc
Q 010406 95 LRLGEKVSEDLYRI 108 (511)
Q Consensus 95 ik~g~lvde~~y~l 108 (511)
++.++++||+.|.+
T Consensus 358 ~~~~~~vdE~~Y~l 371 (372)
T 3ef0_A 358 LSQWKRLPESDYLL 371 (372)
T ss_dssp HHTTSCCCGGGGBC
T ss_pred HHhCCcCChhhcee
Confidence 99999999999986
No 29
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=98.87 E-value=3.2e-09 Score=107.16 Aligned_cols=89 Identities=19% Similarity=0.284 Sum_probs=71.2
Q ss_pred CCCCCCeEEEEecCCCcchHHHHHHHHHHhcCCEEEeecC-CCccEEEEcCChHHHHHHHHHhhhccCCcccccchHHHH
Q 010406 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLS-KKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDS 94 (511)
Q Consensus 16 ~~~F~g~~iy~~~~~~g~~r~~~l~~~~~~~Gg~v~~~~s-~~VTHVV~~~~s~~~~~l~~~~~~~~~~~iV~~~Wl~ec 94 (511)
..+|+||+|+|.+ .....+..+++++..+||++.+.++ ..+||||+.+... .++..+. ..+.+||+.+||.||
T Consensus 197 ~~~f~g~~i~~tG--~~~~~r~~l~~li~~~GG~~~~~ls~~~~THLI~~~~~g-~K~~~A~---~~gi~IV~~~Wl~ds 270 (298)
T 3olc_X 197 CPIFLGCIICVTG--LCGLDRKEVQQLTVKHGGQYMGQLKMNECTHLIVQEPKG-QKYECAK---RWNVHCVTTQWFFDS 270 (298)
T ss_dssp CCTTTTCEEEECS--CCHHHHHHHHHHHHHTTCEECSSCCTTTCCEEECSSSCS-HHHHHHH---HTTCEEECHHHHHHH
T ss_pred ccccCCeEEEEeC--CCCccHHHHHHHHHHcCCEEeceecCCCceEEEEeCCCc-hHHHHHH---HCCCeEEeHHHHHHH
Confidence 4689999999954 4333457789999999999999999 7999999976532 2222222 236899999999999
Q ss_pred HhcCCCCCcccccccc
Q 010406 95 LRLGEKVSEDLYRIKL 110 (511)
Q Consensus 95 ik~g~lvde~~y~l~~ 110 (511)
++.|+++||+.|.+..
T Consensus 271 i~~g~~lde~~Y~l~~ 286 (298)
T 3olc_X 271 IEKGFCQDESIYKTEP 286 (298)
T ss_dssp HHHTSCCCGGGSBSCC
T ss_pred HHCCCCCCchhcCCCC
Confidence 9999999999999964
No 30
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=98.85 E-value=2.8e-09 Score=87.87 Aligned_cols=75 Identities=19% Similarity=0.296 Sum_probs=60.3
Q ss_pred CCCCCCCCeEEEEecCCCcchHHHHHHHHHHhcCCEEEeecC-CCccEEEEcCChHHHHHHHHHhhhccCCcccccchHH
Q 010406 14 DSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLS-KKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLE 92 (511)
Q Consensus 14 ~~~~~F~g~~iy~~~~~~g~~r~~~l~~~~~~~Gg~v~~~~s-~~VTHVV~~~~s~~~~~l~~~~~~~~~~~iV~~~Wl~ 92 (511)
.-..+|.|+++|+.... . +..+|.+++..+||.|+...+ +.|||||+.+. ......+|+++||-
T Consensus 12 ~LpdiFsg~~~~l~~~v-~--~~~~l~RyiiAfgG~v~~~~~~~~vTHvI~~~~------------~~~~~~~V~p~WI~ 76 (88)
T 3pc7_A 12 VLLDIFTGVRLYLPPST-P--DFSRLRRYFVAFDGDLVQEFDMTSATHVLGSRD------------KNPAAQQVSPEWIW 76 (88)
T ss_dssp CCCCCSTTCEECCCTTS-T--THHHHHHHHHHTTCEECCGGGGGGCSEEESCCT------------TCTTSEEECHHHHH
T ss_pred cCChhhcCeEEEccCCc-C--chhhheeeeeecCCEEecccCCCcCeEEecCCC------------cCCCCcEEchHHHH
Confidence 33579999999996543 2 236788999999999998876 49999997653 12356899999999
Q ss_pred HHHhcCCCCCc
Q 010406 93 DSLRLGEKVSE 103 (511)
Q Consensus 93 ecik~g~lvde 103 (511)
||++.|++|++
T Consensus 77 dcI~k~~Ll~~ 87 (88)
T 3pc7_A 77 ACIRKRRLVAP 87 (88)
T ss_dssp HHHHHTSCCSC
T ss_pred HHHhCCcccCC
Confidence 99999999985
No 31
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=98.78 E-value=5.1e-09 Score=110.29 Aligned_cols=88 Identities=18% Similarity=0.226 Sum_probs=69.2
Q ss_pred CCCCCeEEEEecCCC---cchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCCcccccchHHH
Q 010406 17 GIFAGMRVFLVEKGV---QNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLED 93 (511)
Q Consensus 17 ~~F~g~~iy~~~~~~---g~~r~~~l~~~~~~~Gg~v~~~~s~~VTHVV~~~~s~~~~~l~~~~~~~~~~~iV~~~Wl~e 93 (511)
.+|+||+|+|.+.-. ...| ..+.+++..+||++..+++..|||||+.... ..++..+... .+++||+.+||.+
T Consensus 351 ~~L~G~~IvfSG~~p~~~~~~r-~~l~~~~~~lGa~~~~~vs~~vTHLVa~~~~-t~K~~~A~~~--g~IkIVs~~WL~d 426 (442)
T 3ef1_A 351 KVLKGCRLLFSGVIPLGVDVLS-SDIAKWAMSFGAEVVLDFSVPPTHLIAAKIR-TEKVKKAVSM--GNIKVVKLNWLTE 426 (442)
T ss_dssp TTSTTCEEEEESSSCTTSCSTT-SHHHHHHHTTTCEECSSSSSCCSEEEECSCC-CHHHHHHHHH--SSSEEEEHHHHHH
T ss_pred cccCCcEEEEecccCCCCCccH-HHHHHHHHHcCCEEeCCCCCCceEEEeCCCC-CHHHHHHHhc--CCCEEEeHHHHHH
Confidence 689999999986532 2233 4567999999999999999999999997542 2233333222 1579999999999
Q ss_pred HHhcCCCCCcccccc
Q 010406 94 SLRLGEKVSEDLYRI 108 (511)
Q Consensus 94 cik~g~lvde~~y~l 108 (511)
|++.|+++||..|.+
T Consensus 427 cl~~~krldE~~YlL 441 (442)
T 3ef1_A 427 SLSQWKRLPESDYLL 441 (442)
T ss_dssp HHHHTSCCCGGGTBC
T ss_pred HHHcCCcCChhcccc
Confidence 999999999999986
No 32
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=98.78 E-value=1.1e-08 Score=101.22 Aligned_cols=96 Identities=13% Similarity=0.059 Sum_probs=74.9
Q ss_pred CCCCCCCCCCCeEEEEecCCCc---------------------------chHHHHHHHHHHhcCCEEEeecCCC------
Q 010406 11 PALDSNGIFAGMRVFLVEKGVQ---------------------------NRRLQIWRQKLVQMGATVEEKLSKK------ 57 (511)
Q Consensus 11 ~~~~~~~~F~g~~iy~~~~~~g---------------------------~~r~~~l~~~~~~~Gg~v~~~~s~~------ 57 (511)
|.+....+|.|+.++|...... ......|+++++.+||.|++++++.
T Consensus 8 p~p~~~~iF~g~~F~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~I~~~GG~v~~~~~~~~~~~~~ 87 (259)
T 1kzy_C 8 PLPLNKTLFLGYAFLLTMATTSDKLASRSKLPDGPTGSSEEEEEFLEIPPFNKQYTESQLRAGAGYILEDFNEAQCNTAY 87 (259)
T ss_dssp CCCSSTTTTTTEEEEECCCC---------------------------CCCCCHHHHHHHHHTTTCEECSSCCTTTTTTTC
T ss_pred CCCCCCcCcCCcEEEEEcccccccccccccccccccccccccccccccCcccHHHHHHHHHHCCCEEecCccccccccCC
Confidence 4556678999999998543211 1234678999999999999998754
Q ss_pred ccEEEEcCChHHHHHHHHHhhhccCCcccccchHHHHHhcCCCCCccccccc
Q 010406 58 VTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIK 109 (511)
Q Consensus 58 VTHVV~~~~s~~~~~l~~~~~~~~~~~iV~~~Wl~ecik~g~lvde~~y~l~ 109 (511)
+||+|+....+..+.+.+-. .+..||+.+||.+|+++++++|++.|.+.
T Consensus 88 ~t~LIa~~~~rt~K~l~ala---~g~~iVs~~Wl~dc~~~~~~l~~~~Y~l~ 136 (259)
T 1kzy_C 88 QCLLIADQHCRTRKYFLCLA---SGIPCVSHVWVHDSCHANQLQNYRNYLLP 136 (259)
T ss_dssp EEEEEESSCCCSHHHHHHHH---HTCCEEETHHHHHHHHHTSCCCGGGSBCC
T ss_pred CeEEEcCCCCCcHHHHHHHh---cCCCCccHHHHHHHHHcCCcCCHHHccCC
Confidence 79999977656566665432 26789999999999999999999999995
No 33
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=98.76 E-value=1.1e-08 Score=101.30 Aligned_cols=93 Identities=11% Similarity=0.123 Sum_probs=67.4
Q ss_pred CCCCCCCCCCeEEEEecCCCcchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCCcccccchH
Q 010406 12 ALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWL 91 (511)
Q Consensus 12 ~~~~~~~F~g~~iy~~~~~~g~~r~~~l~~~~~~~Gg~v~~~~s~~VTHVV~~~~s~~~~~l~~~~~~~~~~~iV~~~Wl 91 (511)
.++...+|+|++||+..-..... ++.|++++..+||+|+...++.+||||+..... +.... ..+....||+++||
T Consensus 4 ~~~~s~lF~G~~f~V~sg~~~~~-k~~L~~lI~~~GG~v~~n~~~~t~~iIa~~~~~--k~~~~--~~~g~~~IV~p~Wv 78 (263)
T 3ii6_X 4 GSKISNIFEDVEFCVMSGTDSQP-KPDLENRIAEFGGYIVQNPGPDTYCVIAGSENI--RVKNI--ILSNKHDVVKPAWL 78 (263)
T ss_dssp --CCCCTTTTCEEEECCCC--CC-HHHHHHHHHHTTCEECSSCCTTEEEEECSSCCH--HHHHH--HHSCSCCEECHHHH
T ss_pred CCcCcccCCCeEEEEEcCCCCCC-HHHHHHHHHHcCCEEEecCCCCEEEEEeCCCCH--HHHHH--HhcCCCCEeehHHH
Confidence 34566899999999864222223 467889999999999988888888888876542 22111 11124789999999
Q ss_pred HHHHhcCCCCCccccccc
Q 010406 92 EDSLRLGEKVSEDLYRIK 109 (511)
Q Consensus 92 ~ecik~g~lvde~~y~l~ 109 (511)
.||+++|++||.++|.+.
T Consensus 79 ~Dci~~~~llp~~p~~~~ 96 (263)
T 3ii6_X 79 LECFKTKSFVPWQPRFMI 96 (263)
T ss_dssp HHHHHHTSCCCCCGGGEE
T ss_pred HHHHhcCCcCCCCHHHHh
Confidence 999999999998887665
No 34
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=98.76 E-value=1e-08 Score=98.11 Aligned_cols=83 Identities=14% Similarity=0.294 Sum_probs=63.3
Q ss_pred CCCCeEEEEecCCCcchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCCcccccchHHHHHhc
Q 010406 18 IFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRL 97 (511)
Q Consensus 18 ~F~g~~iy~~~~~~g~~r~~~l~~~~~~~Gg~v~~~~s~~VTHVV~~~~s~~~~~l~~~~~~~~~~~iV~~~Wl~ecik~ 97 (511)
...+++|.| +|+.... +++.++.+||.+++++++ +||+|+....+..+.+.+-. .+.+||+.+||.+|+++
T Consensus 9 ~~~~~~v~~--sG~~~~~---~~~~i~~lGg~~~~~~~~-~THlI~~~~~rt~K~l~a~~---~g~~IV~~~Wl~~~~~~ 79 (209)
T 2etx_A 9 ESTAPKVLF--TGVVDAR---GERAVLALGGSLAGSAAE-ASHLVTDRIRRTVKFLCALG---RGIPILSLDWLHQSRKA 79 (209)
T ss_dssp ---CCEEEE--CSSCCHH---HHHHHHHTTCEECSSTTT-CSEEECSSCCCSHHHHHHHH---HTCCEECTHHHHHHHHH
T ss_pred cCCCcEEEE--eCCCcHH---HHHHHHHCCCEEeCCCCC-ceEEEECCCCCCHHHHHHHh---cCCccccHHHHHHHHHc
Confidence 567888888 4444332 379999999999999985 99999976555555554432 26789999999999999
Q ss_pred CCCCCccccccc
Q 010406 98 GEKVSEDLYRIK 109 (511)
Q Consensus 98 g~lvde~~y~l~ 109 (511)
|+.|||+.|.+.
T Consensus 80 ~~~l~e~~y~~~ 91 (209)
T 2etx_A 80 GFFLPPDEYVVT 91 (209)
T ss_dssp TSCCCSGGGBCC
T ss_pred CCCCChhhcccc
Confidence 999999999884
No 35
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=98.75 E-value=9.9e-09 Score=97.54 Aligned_cols=81 Identities=21% Similarity=0.293 Sum_probs=64.7
Q ss_pred EecCCCcchHHHHHHHHHHhcCC-EEEeecCCCccEEEEcCChHHHHHHHHHhhhccCCcccccchHHHHHhcCCCCCcc
Q 010406 26 LVEKGVQNRRLQIWRQKLVQMGA-TVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSED 104 (511)
Q Consensus 26 ~~~~~~g~~r~~~l~~~~~~~Gg-~v~~~~s~~VTHVV~~~~s~~~~~l~~~~~~~~~~~iV~~~Wl~ecik~g~lvde~ 104 (511)
|+-+++.......+.+.++.+|| .+++.+++.+||||+....+..+.+.+-. .+.+||+.+||.+|+++|+.+||+
T Consensus 14 ~~~sgl~~~~~~~l~~~i~~lgG~~~~~~~~~~~THlv~~~~~rT~K~l~ai~---~g~~Iv~~~Wv~~~~~~g~~l~e~ 90 (199)
T 3u3z_A 14 LVMTSMPSEKQNVVIQVVDKLKGFSIAPDVCETTTHVLSGKPLRTLNVLLGIA---RGCWVLSYDWVLWSLELGHWISEE 90 (199)
T ss_dssp EEEESCCHHHHHHHHHHHHHHCSCEEESSCCTTEEEEEESSCCCBHHHHHHHH---TTCEEEETHHHHHHHHHTSCCCSG
T ss_pred EEEcCCCHHHHHHHHHHHHHcCCcEEecCCCCCCeEEEECCCCCCHHHHHHHH---CCCcEEeHHHHHHHhhCCCCCChh
Confidence 44467776666778899999866 77789999999999976545455555332 367899999999999999999999
Q ss_pred ccccc
Q 010406 105 LYRIK 109 (511)
Q Consensus 105 ~y~l~ 109 (511)
.|.+.
T Consensus 91 ~y~~~ 95 (199)
T 3u3z_A 91 PFELS 95 (199)
T ss_dssp GGBCT
T ss_pred hcccc
Confidence 99885
No 36
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=98.74 E-value=8.7e-09 Score=99.41 Aligned_cols=86 Identities=21% Similarity=0.353 Sum_probs=70.1
Q ss_pred CCCCeEEEEecCCCcchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCCcccccchHHHHHhc
Q 010406 18 IFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRL 97 (511)
Q Consensus 18 ~F~g~~iy~~~~~~g~~r~~~l~~~~~~~Gg~v~~~~s~~VTHVV~~~~s~~~~~l~~~~~~~~~~~iV~~~Wl~ecik~ 97 (511)
.+.+++|.| +|+.......+++.++.+||.|++++ .++||+|+....+..+.+.+. ..+.+||+.+||.+|+++
T Consensus 13 ~~~~~~i~~--SG~~~~~~~~l~~~i~~lGg~v~~~~-~~~THLI~~~~~rT~K~l~A~---~~g~~IVs~~Wl~~c~~~ 86 (219)
T 3sqd_A 13 PELTPFVLF--TGFEPVQVQQYIKKLYILGGEVAESA-QKCTHLIASKVTRTVKFLTAI---SVVKHIVTPEWLEECFRC 86 (219)
T ss_dssp GGGCCEEEE--CSCCHHHHHHHHHHHHHTTCEECSSG-GGCSEEECSSCCCCHHHHHHT---TTCSEEECHHHHHHHHHH
T ss_pred CCCCeEEEE--eCCChHHHHHHHHHHHHCCCEEeCCC-CCceEEEECCCCCCHHHHHHH---HcCCCEecHHHHHHHHHc
Confidence 467888888 45665556778999999999999886 789999998765555555532 236789999999999999
Q ss_pred CCCCCccccccc
Q 010406 98 GEKVSEDLYRIK 109 (511)
Q Consensus 98 g~lvde~~y~l~ 109 (511)
|+.|||+.|.+.
T Consensus 87 ~~~l~e~~y~l~ 98 (219)
T 3sqd_A 87 QKFIDEQNYILR 98 (219)
T ss_dssp TSCCCSGGGBCC
T ss_pred CCCCChHhccCC
Confidence 999999999985
No 37
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=98.73 E-value=1.6e-08 Score=98.62 Aligned_cols=85 Identities=15% Similarity=0.115 Sum_probs=68.1
Q ss_pred CCeEEEEecCCCcchHHHHHHHHHHhcCCEEEe--ecCCCccEEEEcCChHHHHHHHHHhhhccCCcccccchHHHHHhc
Q 010406 20 AGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEE--KLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRL 97 (511)
Q Consensus 20 ~g~~iy~~~~~~g~~r~~~l~~~~~~~Gg~v~~--~~s~~VTHVV~~~~s~~~~~l~~~~~~~~~~~iV~~~Wl~ecik~ 97 (511)
++.+|.| +++....+..+.+.++..||.|++ .+++.+||||+....+..+.+.+-. .+.+||+.+||++|+++
T Consensus 8 ~~~~~~~--Sg~~~~~~~~l~~~i~~LGg~~~~~~~~~~~~THlV~~~~~RT~K~l~aia---~G~wIvs~~wl~~s~~~ 82 (235)
T 3al2_A 8 KQYIFQL--SSLNPQERIDYCHLIEKLGGLVIEKQCFDPTCTHIVVGHPLRNEKYLASVA---AGKWVLHRSYLEACRTA 82 (235)
T ss_dssp CCCEEEE--ESCCHHHHHHHHHHHHHTTCEECCSSSCCTTCCEEEESSCCCSHHHHHHHH---TTCEEECTHHHHHHHHH
T ss_pred CCEEEEE--cCCCHHHHHHHHHHHHHcCCEEeccCCCCCCCcEEEECCCCCCHHHHHHHH---cCCcCccHHHHHHHHHc
Confidence 4556666 455544456689999999999986 5789999999987766666665432 37899999999999999
Q ss_pred CCCCCccccccc
Q 010406 98 GEKVSEDLYRIK 109 (511)
Q Consensus 98 g~lvde~~y~l~ 109 (511)
|+.|||+.|.+.
T Consensus 83 g~~l~E~~ye~~ 94 (235)
T 3al2_A 83 GHFVQEEDYEWG 94 (235)
T ss_dssp TSCCCSGGGBTT
T ss_pred CCCCChhceeec
Confidence 999999999986
No 38
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=98.53 E-value=1.4e-07 Score=92.32 Aligned_cols=90 Identities=11% Similarity=0.113 Sum_probs=69.7
Q ss_pred CCCCCeEEEEecC--CCcchHHHHHHHHHHhcCCEEEee-----c--CC-------------------CccEEEEcCChH
Q 010406 17 GIFAGMRVFLVEK--GVQNRRLQIWRQKLVQMGATVEEK-----L--SK-------------------KVTHVLAMDLEA 68 (511)
Q Consensus 17 ~~F~g~~iy~~~~--~~g~~r~~~l~~~~~~~Gg~v~~~-----~--s~-------------------~VTHVV~~~~s~ 68 (511)
.+|+||+++|... ..+ .+...|++++..+||+|.+. + .. +.||||+....+
T Consensus 1 ~lF~g~~F~ls~~~~~~~-~~k~~L~~~I~~~GG~v~~~g~~~lf~~~~~~~~~~~~~~k~~~~~~~~~~t~lia~~~~r 79 (241)
T 2vxb_A 1 LIFDDCVFAFSGPVHEDA-YDRSALETVVQDHGGLVLDTGLRPLFNDPFKSKQKKLRHLKPQKRSKSWNQAFVVSDTFSR 79 (241)
T ss_dssp CTTTTEEEEECCCSSTTS-SCHHHHHHHHHHTTCEECTTCSGGGBCCSCC----CCCSCCBCGGGGGCSEEEEECSSCCC
T ss_pred CCCCCcEEEEecCCCCch-hhHHHHHHHHHHCCCEEecCcchhhccCccccccccccccccccccccccceEEEcCCCCC
Confidence 3799999999765 223 34566899999999999986 2 11 359999986655
Q ss_pred HHHHHHHHhhhccCCcccccchHHHHHhcCCCCCcccccccc
Q 010406 69 LLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKL 110 (511)
Q Consensus 69 ~~~~l~~~~~~~~~~~iV~~~Wl~ecik~g~lvde~~y~l~~ 110 (511)
..+++++.. .+..||+.+||.+|+++++++|++.|.+..
T Consensus 80 t~K~~~ala---~gipiV~~~Wi~dc~~~~~~~~~~~ylL~~ 118 (241)
T 2vxb_A 80 KVKYLEALA---FNIPCVHPQFIKQCLKMNRVVDFSPYLLAS 118 (241)
T ss_dssp CHHHHHHHH---HTCCEECTHHHHHHHHHTSCCCSGGGBBEE
T ss_pred cHHHHHHHH---cCCCEecHHHHHHHHHcCCcCChhhccCCC
Confidence 555555432 267999999999999999999999999963
No 39
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=98.51 E-value=1.8e-07 Score=94.30 Aligned_cols=88 Identities=14% Similarity=0.215 Sum_probs=68.3
Q ss_pred CCCCCCCCCeEEEEecCCCcchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCCcccccchHH
Q 010406 13 LDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLE 92 (511)
Q Consensus 13 ~~~~~~F~g~~iy~~~~~~g~~r~~~l~~~~~~~Gg~v~~~~s~~VTHVV~~~~s~~~~~l~~~~~~~~~~~iV~~~Wl~ 92 (511)
+.....|+|++|.+. ++....+..+.+++..+||++++.++.++||||+.+.. ..++..+.. .+.+||+++||.
T Consensus 100 P~y~~~l~g~~~~~t--G~~~~~r~~l~~~i~~~GG~v~~~~t~~tTHLI~~~~~-t~Ky~~A~~---~gi~IV~~~Wl~ 173 (298)
T 3olc_X 100 PVYNMVMSDVTISCT--SLEKEKREEVHKYVQMMGGRVYRDLNVSVTHLIAGEVG-SKKYLVAAN---LKKPILLPSWIK 173 (298)
T ss_dssp CBCCCTTTTCEEEEE--SCCHHHHHHHHHHHHHTTCEECSSCCTTCCEEEESSSC-SHHHHHHHH---TTCCEECHHHHH
T ss_pred cccccccCCeEEEeC--CCcHHhHHHHHHHHHHCCCEEecCcCCCeeEEEEeCCC-ChHHHHHHH---CCCeEeeHHHHH
Confidence 333679999999995 44444567789999999999999999999999997643 223333222 378999999999
Q ss_pred HHHhcCCCCCcccc
Q 010406 93 DSLRLGEKVSEDLY 106 (511)
Q Consensus 93 ecik~g~lvde~~y 106 (511)
+||+.|+.++..+|
T Consensus 174 ~c~~~~~~~~~~~~ 187 (298)
T 3olc_X 174 TLWEKSQEKKITRY 187 (298)
T ss_dssp HHHHHHHTTCCSSG
T ss_pred HHHHcCCcCCcccc
Confidence 99999998876554
No 40
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=98.44 E-value=2.6e-07 Score=88.91 Aligned_cols=89 Identities=18% Similarity=0.302 Sum_probs=61.3
Q ss_pred CCCCCCeEEEEecCCCcchHHHHHHHHHHhcCCEEEeecCC-----CccEEEEcCChH-----HHHHHHHHhhhccCCcc
Q 010406 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSK-----KVTHVLAMDLEA-----LLQQVSKQHLARFKGSV 85 (511)
Q Consensus 16 ~~~F~g~~iy~~~~~~g~~r~~~l~~~~~~~Gg~v~~~~s~-----~VTHVV~~~~s~-----~~~~l~~~~~~~~~~~i 85 (511)
..+|.|+.|||.+...... ...|+++++.+||+|++.+.. ..||+|+...+. ..+.+. ...+++|
T Consensus 115 ~~lF~g~~~~~~~~~~~~~-~~~l~~li~~~GG~v~~~~~~~~~~~~~~~~vvv~~~~~~~~~~~~~l~----~~~~i~i 189 (229)
T 1l0b_A 115 EKLFEGLQIYCCEPFTNMP-KDELERMLQLCGASVVKELPLLTRDTGAHPIVLVQPSAWTEDNDCPDIG----QLCKGRL 189 (229)
T ss_dssp --CCTTCEEEECSCCSSSC-HHHHHHHHHHTTCEEECSSSCGGGCCSSCCEEEEC-----------------------CE
T ss_pred hhhhcCceEEEEecCCCCC-HHHHHHHHHHCCCEEeCCcccccccCCCceEEEEcCCccchhhhHHHHH----HHcCCeE
Confidence 3799999999976544433 466789999999999999854 368865533221 111111 1236899
Q ss_pred cccchHHHHHhcCCCCCccccccc
Q 010406 86 IRYQWLEDSLRLGEKVSEDLYRIK 109 (511)
Q Consensus 86 V~~~Wl~ecik~g~lvde~~y~l~ 109 (511)
|+.+||.||+..+++++++.|.+.
T Consensus 190 Vs~~WlldsI~~~~~~~~~~Y~l~ 213 (229)
T 1l0b_A 190 VMWDWVLDSISVYRCRDLDAYLVQ 213 (229)
T ss_dssp EETHHHHHHHHTTSCCCGGGGBCC
T ss_pred eehhHHHHHHhcCCcCCccceEcc
Confidence 999999999999999999999886
No 41
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=98.35 E-value=2.1e-07 Score=89.78 Aligned_cols=81 Identities=17% Similarity=0.323 Sum_probs=62.4
Q ss_pred CCeEEEEecCCCcchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCCcccccchHHHHHhcCC
Q 010406 20 AGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGE 99 (511)
Q Consensus 20 ~g~~iy~~~~~~g~~r~~~l~~~~~~~Gg~v~~~~s~~VTHVV~~~~s~~~~~l~~~~~~~~~~~iV~~~Wl~ecik~g~ 99 (511)
++++|.|. |+.... ..+.++.+||.|+++++ .+||||+....+..+.+.+-. .+.+||+++||.+|+++|+
T Consensus 7 ~~~~v~fS--G~~~~~---~~~~i~~lGg~v~~~~~-~~THlV~~~~~RT~K~l~Aia---~g~~IVs~~Wl~~~~~~~~ 77 (220)
T 3l41_A 7 KRVYITFT--GYDKKP---SIDNLKKLDMSITSNPS-KCTHLIAPRILRTSKFLCSIP---YGPCVVTMDWINSCLKTHE 77 (220)
T ss_dssp CCEEEEEC--SCSSCC---CCGGGGGGTEEECSCTT-TCSEEECSSCCCBHHHHHHGG---GCCEEECHHHHHHHHHHTS
T ss_pred ceEEEEEe--ccCCCC---CcchHhhcceeeccCch-hhhhhhhhhHhhhcceeecCC---CCCeEEEhHHHHhhhhhhh
Confidence 45566664 333221 16889999999999885 599999987656666665432 3679999999999999999
Q ss_pred CCCccccccc
Q 010406 100 KVSEDLYRIK 109 (511)
Q Consensus 100 lvde~~y~l~ 109 (511)
.+||+.|.+.
T Consensus 78 ~l~e~~y~l~ 87 (220)
T 3l41_A 78 IVDEEPYLLN 87 (220)
T ss_dssp CCCSGGGBCC
T ss_pred ccccCccccC
Confidence 9999999985
No 42
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=98.33 E-value=4e-07 Score=86.47 Aligned_cols=94 Identities=19% Similarity=0.207 Sum_probs=64.8
Q ss_pred CCCCCCCeEEEEecCCCcchHHHHHHHHHHhcCCEEEeecCC-----CccEEEEcCChHHHHHHHHH-hhhccCCccccc
Q 010406 15 SNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSK-----KVTHVLAMDLEALLQQVSKQ-HLARFKGSVIRY 88 (511)
Q Consensus 15 ~~~~F~g~~iy~~~~~~g~~r~~~l~~~~~~~Gg~v~~~~s~-----~VTHVV~~~~s~~~~~l~~~-~~~~~~~~iV~~ 88 (511)
...+|+|+.|||........ +..|+.+++.+||+|++.+.. +++|||+.+.+......... .....++++|+.
T Consensus 112 ~~~lF~g~~~~~~~~~~~~~-~~~l~~li~~~GG~v~~~~~~~~~~~~~~~ivi~~~~~~~~~~~~~~~a~~~~~~iV~~ 190 (214)
T 1t15_A 112 DRKIFRGLEICCYGPFTNMP-TDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPVVTR 190 (214)
T ss_dssp TSCTTTTCEEEECSCCSSSC-HHHHHHHHHHTTCEECCSGGGCCCSTTCCEEEEECGGGCSSCGGGGSSTTTCSSCEEEH
T ss_pred CCcccCCCEEEEEecCCCCC-HHHHHHHHHHCCCEEecCccccccCCCCccEEEECCCcccchhhHHHHHHhcCCcEEec
Confidence 45799999999977544333 466799999999999998854 22346554322100000000 011236899999
Q ss_pred chHHHHHhcCCCCCccccccc
Q 010406 89 QWLEDSLRLGEKVSEDLYRIK 109 (511)
Q Consensus 89 ~Wl~ecik~g~lvde~~y~l~ 109 (511)
+||.||+..++++|++.|.+.
T Consensus 191 ~Wi~dsi~~~~~l~~~~Y~l~ 211 (214)
T 1t15_A 191 EWVLDSVALYQCQELDTYLIP 211 (214)
T ss_dssp HHHHHHHHHTSCCCSGGGBCC
T ss_pred cHHHHhHhhcCcCCCcceeec
Confidence 999999999999999999874
No 43
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=98.26 E-value=9.4e-08 Score=94.30 Aligned_cols=89 Identities=12% Similarity=0.159 Sum_probs=61.7
Q ss_pred CCCCCCeEEEEecCCCc-----chHHHHHHHHHHhcCCEEEeecCCC-----ccEEEEcCChHHHHHHHHHhhhccCCcc
Q 010406 16 NGIFAGMRVFLVEKGVQ-----NRRLQIWRQKLVQMGATVEEKLSKK-----VTHVLAMDLEALLQQVSKQHLARFKGSV 85 (511)
Q Consensus 16 ~~~F~g~~iy~~~~~~g-----~~r~~~l~~~~~~~Gg~v~~~~s~~-----VTHVV~~~~s~~~~~l~~~~~~~~~~~i 85 (511)
..+|+||++|++..... ...++-|.++++.+||+++...... .||||++..... .......+..|
T Consensus 3 s~lF~g~~f~v~~~~~~p~~~~~~~~~~L~~li~~~GG~~~~~~~~~t~~~~~~~iI~~~~t~k-----~~~~~~~~~~v 77 (264)
T 1z56_C 3 SNIFAGLLFYVLSDYVTEDTGIRITRAELEKTIVEHGGKLIYNVILKRHSIGDVRLISCKTTTE-----CKALIDRGYDI 77 (264)
T ss_dssp CCCCCTTCCCCSEEEECCCCCSSSSCCCTHHHHHHHHTTSCCCSSCCCCCSSCCEEEECSCCGG-----GGGGTTTTCCC
T ss_pred cccCCCcEEEEEcCCCCccccccCCHHHHHHHHHHcCCEEeecCCCCccCccceEEEecCCcHH-----HHHHHhCCCCE
Confidence 46999999998632111 1123557899999999887644322 478888654321 11111224689
Q ss_pred cccchHHHHHhcCCCCCccccccc
Q 010406 86 IRYQWLEDSLRLGEKVSEDLYRIK 109 (511)
Q Consensus 86 V~~~Wl~ecik~g~lvde~~y~l~ 109 (511)
|+++||.||+++|++|+.+.|.+.
T Consensus 78 V~p~Wv~dci~~~~llp~~~y~~~ 101 (264)
T 1z56_C 78 LHPNWVLDCIAYKRLILIEPNYCF 101 (264)
T ss_dssp BCSSTTHHHHSSCSCCCCCSCBSC
T ss_pred EechHHHHHhhcCCCCCCChHHhh
Confidence 999999999999999999998765
No 44
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=98.23 E-value=1.4e-06 Score=86.00 Aligned_cols=88 Identities=20% Similarity=0.324 Sum_probs=64.8
Q ss_pred CCCCCCeEEEEecCCCcchHHHHHHHHHHhcCCEEEeecC---------CCccEEEEcCChHHHHHHHHHhhhccCCccc
Q 010406 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLS---------KKVTHVLAMDLEALLQQVSKQHLARFKGSVI 86 (511)
Q Consensus 16 ~~~F~g~~iy~~~~~~g~~r~~~l~~~~~~~Gg~v~~~~s---------~~VTHVV~~~~s~~~~~l~~~~~~~~~~~iV 86 (511)
..+|+|++||+.+...+ ....+++.+++.+||.|+..+. .+.+|||+.+.+......+. ....+++||
T Consensus 153 ~~LF~G~~I~i~~~~~~-~~~~~~~~Il~~~Ga~vv~~~~s~~~~~d~~~~~~~viv~d~~~~~~~~~~--a~~~~i~iV 229 (259)
T 1kzy_C 153 ENPFQNLKVLLVSDQQQ-NFLELWSEILMTGGAASVKQHHSSAHNKDIALGVFDVVVTDPSCPASVLKC--AEALQLPVV 229 (259)
T ss_dssp CCTTTTCEEEEEESCTT-TTHHHHHHHHHHTTCSEEEEEESSSSCCCSCGGGCSEEEECTTCCHHHHHH--HHHHTCCEE
T ss_pred CCCCCCeEEEEecCCCC-CHHHHHHHHHHhcCCEEEeccccchhhhhccCCCCeEEEECCCChHHHHHH--HHhcCCCEe
Confidence 57999999999887543 3468899999999999998773 25778887543311111111 122368999
Q ss_pred ccchHHHHHhcCCCCCcccc
Q 010406 87 RYQWLEDSLRLGEKVSEDLY 106 (511)
Q Consensus 87 ~~~Wl~ecik~g~lvde~~y 106 (511)
+.+||.+||..|+++|++.|
T Consensus 230 s~EWv~~sI~~~~ll~~~~h 249 (259)
T 1kzy_C 230 SQEWVIQCLIVGERIGFKQH 249 (259)
T ss_dssp CHHHHHHHHHHTSCCCTTSS
T ss_pred cHHHHHHHHHhCCcCCCCcC
Confidence 99999999999999998765
No 45
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=98.13 E-value=1.2e-06 Score=83.12 Aligned_cols=83 Identities=12% Similarity=0.170 Sum_probs=61.8
Q ss_pred CCCCCCCeEEEEecCCCcchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCCcccccchHHHH
Q 010406 15 SNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDS 94 (511)
Q Consensus 15 ~~~~F~g~~iy~~~~~~g~~r~~~l~~~~~~~Gg~v~~~~s~~VTHVV~~~~s~~~~~l~~~~~~~~~~~iV~~~Wl~ec 94 (511)
...+|.|+.+|++.......+ +.|+.+++.+||+|+..+. ..+ ||+.+.... ......+|+++||.||
T Consensus 116 ~~~LF~g~~~~~v~~~~~~~~-~~L~~lI~~~GG~v~~~~~-~~~-iiI~~~~~~---------~~~~~~~V~p~Wi~Ds 183 (199)
T 3u3z_A 116 RGTLFADQPVMFVSPASSPPV-AKLCELVHLCGGRVSQVPR-QAS-IVIGPYSGK---------KKATVKYLSEKWVLDS 183 (199)
T ss_dssp CCCTTTTSCCEEECTTCSSCH-HHHHHHHHHTTCCBCSSGG-GCS-EEESCCCSC---------CCTTCEEECHHHHHHH
T ss_pred cchhhCCCeEEEECCCCCCCH-HHHHHHHHHcCCEEeccCC-CCE-EEEeCCchh---------ccCCCcEEChhHHHHH
Confidence 348999997666655443343 7789999999999999885 344 444443211 1235679999999999
Q ss_pred HhcCCCCCccccccc
Q 010406 95 LRLGEKVSEDLYRIK 109 (511)
Q Consensus 95 ik~g~lvde~~y~l~ 109 (511)
+.+++++|++.|.+.
T Consensus 184 I~~~~llp~~~Y~~~ 198 (199)
T 3u3z_A 184 ITQHKVCAPENYLLS 198 (199)
T ss_dssp HHHTSCCCGGGGBCC
T ss_pred HHcCCcCChHhccCC
Confidence 999999999999873
No 46
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=98.01 E-value=6e-06 Score=80.59 Aligned_cols=80 Identities=11% Similarity=0.226 Sum_probs=60.8
Q ss_pred CCCCCCeEEEEecCCCcch-----------HHHHHHHHHHhcCCEE--EeecCCCccEEEEcCChHHHHHHHHHhhhccC
Q 010406 16 NGIFAGMRVFLVEKGVQNR-----------RLQIWRQKLVQMGATV--EEKLSKKVTHVLAMDLEALLQQVSKQHLARFK 82 (511)
Q Consensus 16 ~~~F~g~~iy~~~~~~g~~-----------r~~~l~~~~~~~Gg~v--~~~~s~~VTHVV~~~~s~~~~~l~~~~~~~~~ 82 (511)
..+|+|++|||+....+.. .++.+..+++.+||.+ +..+....+|+|+.+.... ....+
T Consensus 149 ~~Lf~g~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~Ga~~~~v~~~~~~~~d~v~~~~~~~--------~~~~~ 220 (241)
T 2vxb_A 149 KGPLFGKKILFIIPEAKSWQKKIENTEQGQKALAHVYHALALGADVEIRPNVAHLECDLILTMDGNI--------VDETN 220 (241)
T ss_dssp CCTTTTCEEEECCCC------------CHHHHHHHHHHHHHTTCEEECCSCCSSCCCSEEECSSSCC--------CSSCS
T ss_pred CcCCCCcEEEEEeCCCcccccccccccccchHHHHHHHHHHcCCceecccccccCCccEEEECCccc--------cccCC
Confidence 5899999999986532211 2588999999999999 5555667899999754321 22347
Q ss_pred CcccccchHHHHHhcCCCCCc
Q 010406 83 GSVIRYQWLEDSLRLGEKVSE 103 (511)
Q Consensus 83 ~~iV~~~Wl~ecik~g~lvde 103 (511)
++||+.+||.+||..|+++|.
T Consensus 221 ~~iV~~eWv~~~i~~g~~l~~ 241 (241)
T 2vxb_A 221 CPVVDPEWIVECLISQSDIST 241 (241)
T ss_dssp SCEECHHHHHHHHHHTSCTTC
T ss_pred CCEecHHHHHHHHHhceecCC
Confidence 899999999999999999984
No 47
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=97.89 E-value=2.2e-05 Score=74.68 Aligned_cols=85 Identities=8% Similarity=0.085 Sum_probs=63.0
Q ss_pred CCCCCeEEEEecCCCcchHHHHHHHHHHhcCCEEEeecCCC--ccEEEEcCChH--HHHHHHHHhhhccCCcccccchHH
Q 010406 17 GIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKK--VTHVLAMDLEA--LLQQVSKQHLARFKGSVIRYQWLE 92 (511)
Q Consensus 17 ~~F~g~~iy~~~~~~g~~r~~~l~~~~~~~Gg~v~~~~s~~--VTHVV~~~~s~--~~~~l~~~~~~~~~~~iV~~~Wl~ 92 (511)
.+|.|++|||.+...+ . ...++.+++.+||+|....... -+|||+...+. ..+.. ...+.++|+.+||.
T Consensus 114 ~lF~g~~~~~~~~~~~-~-~~~l~~li~~~GG~v~~~~~~~~~~~~ivI~~~~d~~~~~~~-----~~~~i~vvs~eWi~ 186 (209)
T 2etx_A 114 RLLEGYEIYVTPGVQP-P-PPQMGEIISCCGGTYLPSMPRSYKPQRVVITCPQDFPHCSIP-----LRVGLPLLSPEFLL 186 (209)
T ss_dssp CTTTTCEEEECTTCSS-C-HHHHHHHHHHTTCEECSSCCCSCCTTEEEECCGGGGGGCHHH-----HHHTCCEECTHHHH
T ss_pred CCcCCcEEEEeCCCCC-C-HHHHHHHHHHCCCEEECCCCCCCCCceEEEECcccHHHHHHH-----HHCCCeEEcHHHHH
Confidence 7999999999765433 2 3567899999999999888654 37888743322 11111 12257899999999
Q ss_pred HHHhcCCCCCccccccc
Q 010406 93 DSLRLGEKVSEDLYRIK 109 (511)
Q Consensus 93 ecik~g~lvde~~y~l~ 109 (511)
+||..+++ |.+.|.+.
T Consensus 187 ~sI~~q~l-d~e~y~l~ 202 (209)
T 2etx_A 187 TGVLKQEA-KPEAFVLS 202 (209)
T ss_dssp HHHHHTCC-CGGGGBCC
T ss_pred HHHHhccc-ChHHheec
Confidence 99999775 99999986
No 48
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=97.82 E-value=0.0001 Score=63.09 Aligned_cols=80 Identities=13% Similarity=0.069 Sum_probs=60.9
Q ss_pred CCCCCCCeEEEEecCCCcchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCCcccccchHHHH
Q 010406 15 SNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDS 94 (511)
Q Consensus 15 ~~~~F~g~~iy~~~~~~g~~r~~~l~~~~~~~Gg~v~~~~s~~VTHVV~~~~s~~~~~l~~~~~~~~~~~iV~~~Wl~ec 94 (511)
....|.|.+|.|-+.-....| +-+++++..+||.|..+++..++|||+.+.....+..++. ..+++||+.+||.++
T Consensus 29 ~~~~l~G~~~v~TG~l~~~~R-~e~~~~i~~~Gg~v~~sVSkkTd~LV~G~~~g~sK~~kA~---~lgI~Ii~E~~f~~l 104 (109)
T 2k6g_A 29 AENCLEGLIFVITGVLESIER-DEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAA---ALGTKIIDEDGLLNL 104 (109)
T ss_dssp CTTTTTTCEEEEESBCSSCCH-HHHHHHHHHTTCEEESSCCTTCCEEEECBCCCHHHHHHHH---HHTCEEECHHHHHHH
T ss_pred CCCCCCCCEEEEeeeCCCCCH-HHHHHHHHHcCCEeeCcccCCceEEEECCCCChHHHHHHH---HcCCeEEeHHHHHHH
Confidence 345799999999876433344 5678999999999999999999999997643212333322 237899999999999
Q ss_pred HhcC
Q 010406 95 LRLG 98 (511)
Q Consensus 95 ik~g 98 (511)
+..+
T Consensus 105 l~~~ 108 (109)
T 2k6g_A 105 IRNL 108 (109)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 9765
No 49
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=97.82 E-value=1.2e-05 Score=76.37 Aligned_cols=85 Identities=12% Similarity=0.049 Sum_probs=58.4
Q ss_pred CCCCCCeEEEEecCCCcchHHHHHHHHHHhcCCEEEeecC-----------------------CCccEEEEcCChHHHHH
Q 010406 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLS-----------------------KKVTHVLAMDLEALLQQ 72 (511)
Q Consensus 16 ~~~F~g~~iy~~~~~~g~~r~~~l~~~~~~~Gg~v~~~~s-----------------------~~VTHVV~~~~s~~~~~ 72 (511)
..+|.|+.|||.+..... .+..|+++++.+||+|++... ..+||.|+...... +
T Consensus 102 ~~lF~g~~~~l~~~~~~~-~~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~~t~~iv~~~~~~--~ 178 (210)
T 2nte_A 102 PKLFDGCYFYLWGTFKHH-PKDNLIKLVTAGGGQILSRKPKPDSDVTQTINTVAYHARPDSDQRFCTQYIIYEDLCN--Y 178 (210)
T ss_dssp CCTTTTCEEEECSCCSSS-CHHHHHHHHHHTTCEEESSCCCGGGCGGGSSCCCCTTSCTTCGGGTCCEEEEECSCSS--C
T ss_pred ccccCceEEEEeccCCCC-CHHHHHHHHHHCCCEEEecCCCCccccccccceeeeccCCCcccccceEEEEeccccc--c
Confidence 469999999998753333 347789999999999996321 23578877542110 0
Q ss_pred HHHHhhhccCCcccccchHHHHHhcCCCCCcc
Q 010406 73 VSKQHLARFKGSVIRYQWLEDSLRLGEKVSED 104 (511)
Q Consensus 73 l~~~~~~~~~~~iV~~~Wl~ecik~g~lvde~ 104 (511)
. ..+....+.++|+.+||.|||..++++|.+
T Consensus 179 ~-~~~~~~~~v~~V~~~Wl~dcI~~~~llp~~ 209 (210)
T 2nte_A 179 H-PERVRQGKVWKAPSSWFIDCVMSFELLPLD 209 (210)
T ss_dssp C-CSCSEETTEEEEEHHHHHHHHHHTSCCCSC
T ss_pred C-HHHHhccCcccccHHHHHHHHHhCeeccCC
Confidence 0 001112245799999999999999999975
No 50
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=97.72 E-value=2.7e-05 Score=65.37 Aligned_cols=57 Identities=23% Similarity=0.263 Sum_probs=46.6
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHH-hCCchhhHHHHhhchhHHHHHHhcccCCCHHHHHHHHHhCCCCHHHH
Q 010406 252 SADQVKGLPGIGKSMQDHIQEIVT-TGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL 322 (511)
Q Consensus 252 s~~~l~~lpgIG~~ia~kI~Eil~-tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~Gi~tledL 322 (511)
+.++|..|||||+.+|.+|.+..+ +|.+..+++ |.+|+|||++++++|++.|+ +++|
T Consensus 38 ~~~~L~~ipGIG~~~A~~Il~~r~~~g~f~s~ed------------L~~v~Gig~k~~~~l~~~g~--ld~~ 95 (98)
T 2edu_A 38 SARDLRSLQRIGPKKAQLIVGWRELHGPFSQVED------------LERVEGITGKQMESFLKANI--LGLA 95 (98)
T ss_dssp CHHHHHHSTTCCHHHHHHHHHHHHHHCCCSSGGG------------GGGSTTCCHHHHHHHHHHHH--HHHH
T ss_pred CHHHHHHCCCCCHHHHHHHHHHHHhcCCcCCHHH------------HHhCCCCCHHHHHHHHHCcC--hhcc
Confidence 356799999999999999999986 487755544 46999999999999999885 4444
No 51
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.62 E-value=0.0002 Score=61.49 Aligned_cols=79 Identities=13% Similarity=0.095 Sum_probs=59.9
Q ss_pred CCCCCCCeEEEEecCCCcchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCCcccccchHHHH
Q 010406 15 SNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDS 94 (511)
Q Consensus 15 ~~~~F~g~~iy~~~~~~g~~r~~~l~~~~~~~Gg~v~~~~s~~VTHVV~~~~s~~~~~l~~~~~~~~~~~iV~~~Wl~ec 94 (511)
....|.|.+|.|-+.-....| .-+++++..+||.|..+++..++|||+-+.....+..++. ..+++||+.+||.+.
T Consensus 19 ~~~~l~G~~~v~TG~l~~~~R-~e~~~~i~~~Ggkv~~sVSkkTd~LV~G~~~g~sKl~KA~---~lgI~IisE~~f~~l 94 (112)
T 2ebu_A 19 AENCLEGLIFVITGVLESIER-DEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAA---ALGTKIIDEDGLLNL 94 (112)
T ss_dssp CSSSSTTCEEEECSCCSSSCH-HHHHHHHHHTTCEECSSCCSSCCEEEECSSCCSHHHHHHH---HHTCEEEEHHHHHHH
T ss_pred CCCCcCCCEEEEeeeCCCCCH-HHHHHHHHHcCCEEeccccCCeeEEEecCCCChHHHHHHH---HcCCeEEeHHHHHHH
Confidence 345799999999776433344 5678999999999999999999999997643212323322 237899999999999
Q ss_pred Hhc
Q 010406 95 LRL 97 (511)
Q Consensus 95 ik~ 97 (511)
+..
T Consensus 95 l~~ 97 (112)
T 2ebu_A 95 IRT 97 (112)
T ss_dssp HHH
T ss_pred Hhh
Confidence 975
No 52
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=97.62 E-value=0.00011 Score=63.40 Aligned_cols=85 Identities=9% Similarity=0.067 Sum_probs=60.3
Q ss_pred CCCCCCeEEEEecCCCcchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCC-hH-HHHHHHHHhhhccCCcccccchHH-
Q 010406 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDL-EA-LLQQVSKQHLARFKGSVIRYQWLE- 92 (511)
Q Consensus 16 ~~~F~g~~iy~~~~~~g~~r~~~l~~~~~~~Gg~v~~~~s~~VTHVV~~~~-s~-~~~~l~~~~~~~~~~~iV~~~Wl~- 92 (511)
...|.|++|.|.+.-.. .| +-+++++..+||.|...++..+||||+.++ +. -.+..+++ ..+++||+.+||.
T Consensus 8 ~~~l~G~~~ViTG~l~~-~R-~e~k~~ie~~Ggkv~~sVskkT~~lV~g~~~e~~gsKl~kA~---~lgI~IvsE~~l~~ 82 (113)
T 2cok_A 8 DKPLSNMKILTLGKLSR-NK-DEVKAMIEKLGGKLTGTANKASLCISTKKEVEKMNKKMEEVK---EANIRVVSEDFLQD 82 (113)
T ss_dssp CCSSSSCEEEECSCCSS-CH-HHHHHHHHHTTCEEESCSTTCSEEECCHHHHHHCCHHHHHHH---HTTCCEECTHHHHH
T ss_pred CCCcCCCEEEEEecCCC-CH-HHHHHHHHHCCCEEcCccccCccEEEECCCCCCCChHHHHHH---HCCCcEEeHHHHHH
Confidence 45799999999876433 44 667899999999999999999999999732 11 12223322 3478999999955
Q ss_pred ---------HHHhcCCCCCccc
Q 010406 93 ---------DSLRLGEKVSEDL 105 (511)
Q Consensus 93 ---------ecik~g~lvde~~ 105 (511)
+|++..+..|++.
T Consensus 83 ~~~~~~~~~~~i~k~~i~~w~~ 104 (113)
T 2cok_A 83 VSASTKSLQELFLAHILSSWGA 104 (113)
T ss_dssp HHSCCSCHHHHHHHTBCSSCCC
T ss_pred HHhhchhHHHHHHHhcCCCCCC
Confidence 5555555555443
No 53
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=97.56 E-value=9.2e-05 Score=61.45 Aligned_cols=77 Identities=13% Similarity=0.139 Sum_probs=59.5
Q ss_pred CCCCCCCeEEEEecCCCcchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCCcccccchHHHH
Q 010406 15 SNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDS 94 (511)
Q Consensus 15 ~~~~F~g~~iy~~~~~~g~~r~~~l~~~~~~~Gg~v~~~~s~~VTHVV~~~~s~~~~~l~~~~~~~~~~~iV~~~Wl~ec 94 (511)
+...|.|.+|.|-+.-.. .| +-+++++..+||.|..+++..+||||+.+... .+..+ ....+++||+.+|+.++
T Consensus 4 ~~~~l~G~~~v~TG~l~~-~R-~e~~~~i~~~Gg~v~~sVskkt~~LV~g~~~g-sK~~k---A~~lgI~Ii~E~~f~~~ 77 (92)
T 1l7b_A 4 GGEALKGLTFVITGELSR-PR-EEVKALLRRLGAKVTDSVSRKTSYLVVGENPG-SKLEK---ARALGVPTLTEEELYRL 77 (92)
T ss_dssp CCCSSTTCEEECSTTTTS-CH-HHHHHHHHHTTCEEESCCSSSCCCBEECSSSS-TTHHH---HHCSSSCCEEHHHHHHH
T ss_pred CCCCcCCcEEEEecCCCC-CH-HHHHHHHHHcCCEEeCcccCCeeEEEeCCCCC-hHHHH---HHHcCCcEEeHHHHHHH
Confidence 445799999999776444 44 66789999999999999999999999975432 22222 22347899999999999
Q ss_pred Hhc
Q 010406 95 LRL 97 (511)
Q Consensus 95 ik~ 97 (511)
+..
T Consensus 78 l~~ 80 (92)
T 1l7b_A 78 LEA 80 (92)
T ss_dssp HHH
T ss_pred HHh
Confidence 864
No 54
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=97.36 E-value=5e-05 Score=60.35 Aligned_cols=46 Identities=33% Similarity=0.464 Sum_probs=37.2
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhcccCCCHHHHHHHHH
Q 010406 253 ADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (511)
Q Consensus 253 ~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~ 313 (511)
.++|..|||||+++|.+|.+.. +...++.|.+|+|+|++++++++.
T Consensus 26 ~~~L~~ipGIG~~~A~~Il~~r---------------~~~s~~eL~~v~Gig~k~~~~i~~ 71 (75)
T 2duy_A 26 LEELMALPGIGPVLARRIVEGR---------------PYARVEDLLKVKGIGPATLERLRP 71 (75)
T ss_dssp HHHHTTSTTCCHHHHHHHHHTC---------------CCSSGGGGGGSTTCCHHHHHHHGG
T ss_pred HHHHHhCCCCCHHHHHHHHHHc---------------ccCCHHHHHhCCCCCHHHHHHHHH
Confidence 4679999999999999999864 223444566999999999999864
No 55
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=97.20 E-value=0.00032 Score=68.01 Aligned_cols=91 Identities=22% Similarity=0.223 Sum_probs=65.2
Q ss_pred CCCCCCeEEEEecCCCcchHHHHHHHHHHhcCCEEEeecC----CCccEEEEcCChHHHHH--HHHHhhhccCCcccccc
Q 010406 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLS----KKVTHVLAMDLEALLQQ--VSKQHLARFKGSVIRYQ 89 (511)
Q Consensus 16 ~~~F~g~~iy~~~~~~g~~r~~~l~~~~~~~Gg~v~~~~s----~~VTHVV~~~~s~~~~~--l~~~~~~~~~~~iV~~~ 89 (511)
..+|.|+.|||..+ ..+...|+++++..||+|....+ ...||++++-....... .....+...++++|+.+
T Consensus 133 ~~lF~g~~v~l~~~---~~~~~~l~~ii~agGg~vl~~~~~~~~~~~t~~~vd~~~~~~~~~~~~~~~~~~~~i~~v~~e 209 (235)
T 3al2_A 133 EGAFSGWKVILHVD---QSREAGFKRLLQSGGAKVLPGHSVPLFKEATHLFSDLNKLKPDDSGVNIAEAAAQNVYCLRTE 209 (235)
T ss_dssp SSTTTTCEEEEECC---HHHHHHHHHHHHHTTCEECSSCCGGGGGGCSEEEECC--------CCCHHHHHHTTCEEEETH
T ss_pred CCCCCCcEEEEecC---CCcHHHHHHHHHcCCcEEecCCCCCccccCceEEEecccCCccchhHHHHHHHHcCCcEEcHH
Confidence 57999999999874 34567789999999999987653 35799887532110000 00111112368999999
Q ss_pred hHHHHHhcCCCCCccccccc
Q 010406 90 WLEDSLRLGEKVSEDLYRIK 109 (511)
Q Consensus 90 Wl~ecik~g~lvde~~y~l~ 109 (511)
||.+|+-..++.+.+.|.+.
T Consensus 210 wlld~i~~~~~~~~~~y~l~ 229 (235)
T 3al2_A 210 YIADYLMQESPPHVENYCLP 229 (235)
T ss_dssp HHHHHHHCSSCCCHHHHBCG
T ss_pred HHHHHHhcCCCCChhheEcc
Confidence 99999999999999999885
No 56
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=97.19 E-value=0.00038 Score=57.62 Aligned_cols=84 Identities=7% Similarity=0.124 Sum_probs=63.0
Q ss_pred CCCCCCeEEEEecCCC---cchHHHHHHHHHHhcCCEEEeecCCCc--cEEEEcCChHHHHHHHHHhhhccCCcccccch
Q 010406 16 NGIFAGMRVFLVEKGV---QNRRLQIWRQKLVQMGATVEEKLSKKV--THVLAMDLEALLQQVSKQHLARFKGSVIRYQW 90 (511)
Q Consensus 16 ~~~F~g~~iy~~~~~~---g~~r~~~l~~~~~~~Gg~v~~~~s~~V--THVV~~~~s~~~~~l~~~~~~~~~~~iV~~~W 90 (511)
...|+|+.+||..... ...-.+.|+++++.+||.|...+..+. -+.|+..... .....|+..+
T Consensus 9 ~~vF~g~~Fyin~d~~a~ds~~d~d~L~~lI~~nGG~Vl~~lP~~s~~~~yVVSpyN~------------t~LpTVtpTY 76 (106)
T 2l42_A 9 GPPLSNMKFYLNRDADAHDSLNDIDQLARLIRANGGEVLDSKPRESKENVFIVSPYNH------------TNLPTVTPTY 76 (106)
T ss_dssp SCSSCCCCBEECCSSSCSSCSSTHHHHHHHHHTTTSCCCEECCCCCSSCCCCBCTTCC------------CSSSBCCTTH
T ss_pred CccccCcEEEEcCCCccchhhhHHHHHHHHHHhcCcEEhhhCcccccCCeEEEeCCCC------------CCCccccHHH
Confidence 4569999999986421 123467899999999999999985432 3444433211 1457899999
Q ss_pred HHHHHhcCCCCCccccccccC
Q 010406 91 LEDSLRLGEKVSEDLYRIKLD 111 (511)
Q Consensus 91 l~ecik~g~lvde~~y~l~~~ 111 (511)
+..|+..+++|+.+.|.+..+
T Consensus 77 I~aC~~~nTLLnv~~YLvp~d 97 (106)
T 2l42_A 77 IKACCQSNSLLNMENYLVPYD 97 (106)
T ss_dssp HHHHHHSTTSCGGGGCCBCSC
T ss_pred HHHHHhcCceecccccccCch
Confidence 999999999999999999754
No 57
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=97.10 E-value=0.00049 Score=57.57 Aligned_cols=47 Identities=15% Similarity=0.153 Sum_probs=39.0
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhcccCCCHHHHHHHHH
Q 010406 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (511)
Q Consensus 252 s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~ 313 (511)
+.++|..|||||+.+|+.|.+ .|.+..+++| .+|+|+|+++..++-.
T Consensus 24 s~~eL~~lpGIG~~~A~~IV~---~GpF~s~edL------------~~V~Gig~~~~e~l~~ 70 (97)
T 3arc_U 24 NIAAFIQYRGLYPTLAKLIVK---NAPYESVEDV------------LNIPGLTERQKQILRE 70 (97)
T ss_dssp CGGGGGGSTTCTTHHHHHHHH---HCCCSSGGGG------------GGCTTCCHHHHHHHHH
T ss_pred CHHHHhHCCCCCHHHHHHHHH---cCCCCCHHHH------------HhccCCCHHHHHHHHH
Confidence 458899999999999999988 5666655554 4999999999998855
No 58
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=96.99 E-value=0.0007 Score=59.46 Aligned_cols=46 Identities=13% Similarity=0.122 Sum_probs=38.0
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhcccCCCHHHHHHHH
Q 010406 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY 312 (511)
Q Consensus 252 s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~ 312 (511)
+.++++.|||||++.|++|. +.|-+..+|+| ++|+|||+|+.+.+-
T Consensus 61 ~~~eL~~LpGiGp~~A~~II---~~GpF~svedL------------~~V~GIg~k~~e~l~ 106 (134)
T 1s5l_U 61 NIAAFIQYRGLYPTLAKLIV---KNAPYESVEDV------------LNIPGLTERQKQILR 106 (134)
T ss_dssp CGGGGGGSTTCTHHHHHHHH---HTCCCSSGGGG------------GGCTTCCHHHHHHHH
T ss_pred CHHHHHHCCCCCHHHHHHHH---HcCCCCCHHHH------------HhCCCCCHHHHHHHH
Confidence 35789999999999999998 57777777665 499999999877763
No 59
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=96.71 E-value=0.0032 Score=49.23 Aligned_cols=51 Identities=22% Similarity=0.367 Sum_probs=38.9
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhcccCCCHHHHHHHHH
Q 010406 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (511)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~ 313 (511)
..|.+|||||..++..|.+.. |.+ +.+.+. ..+.|..|+|||+++|..++.
T Consensus 14 ~~L~~i~giG~~~a~~Ll~~f--gs~---~~l~~a----~~~~L~~i~Gig~~~a~~i~~ 64 (75)
T 1x2i_A 14 LIVEGLPHVSATLARRLLKHF--GSV---ERVFTA----SVAELMKVEGIGEKIAKEIRR 64 (75)
T ss_dssp HHHTTSTTCCHHHHHHHHHHH--CSH---HHHHHC----CHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHcCCCCCCHHHHHHHHHHc--CCH---HHHHhC----CHHHHhcCCCCCHHHHHHHHH
Confidence 458999999999999988854 554 444332 234567999999999999976
No 60
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=96.53 E-value=0.0016 Score=61.14 Aligned_cols=53 Identities=13% Similarity=0.192 Sum_probs=38.6
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhcccCCCHHHHHHHHH
Q 010406 255 QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (511)
Q Consensus 255 ~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~ 313 (511)
.|.++||||+++|..|-..+....+ .+.+. ....+.|++|||||+|+|++++.
T Consensus 73 ~L~~v~GIGpk~A~~iL~~f~~~~l--~~aI~----~~d~~~L~~vpGIG~K~A~rI~~ 125 (191)
T 1ixr_A 73 LLLSVSGVGPKVALALLSALPPRLL--ARALL----EGDARLLTSASGVGRRLAERIAL 125 (191)
T ss_dssp HHHSSSCCCHHHHHHHHHHSCHHHH--HHHHH----TTCHHHHTTSTTCCHHHHHHHHH
T ss_pred HHhcCCCcCHHHHHHHHHhCChHHH--HHHHH----hCCHHHHHhCCCCCHHHHHHHHH
Confidence 5778999999999998765433211 22233 23456788999999999999975
No 61
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=96.46 E-value=0.0021 Score=60.14 Aligned_cols=46 Identities=30% Similarity=0.383 Sum_probs=38.2
Q ss_pred ccc-chhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhcccCCCH
Q 010406 249 KIE-SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGP 305 (511)
Q Consensus 249 ~i~-s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGp 305 (511)
+|+ +.++|..|||||+++|..|.++-+.|.+..+|+|.+ +|.|||.
T Consensus 126 pITA~~~eL~~LpGIG~k~A~~IIeyRe~G~F~s~eDL~~-----------RV~GIg~ 172 (205)
T 2i5h_A 126 SITTRMHQLELLPGVGKKMMWAIIEERKKRPFESFEDIAQ-----------RVKGIQR 172 (205)
T ss_dssp CBCSSSBGGGGSTTCCHHHHHHHHHHHHHSCCCSHHHHHH-----------HSTTCCC
T ss_pred CccCCHHHHhcCCCcCHHHHHHHHHHHhcCCCCCHHHHHH-----------hcCCCCc
Confidence 443 568899999999999999999998899988888754 6889554
No 62
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=96.41 E-value=0.0027 Score=50.55 Aligned_cols=51 Identities=18% Similarity=0.394 Sum_probs=38.9
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhcccCCCHHHHHHHHH
Q 010406 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (511)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~ 313 (511)
..|..|||||+..+.+|.+.. |. ++.+.+. ..+.|.+|+|||+++|..+++
T Consensus 24 ~~L~~I~gIG~~~A~~Ll~~f--gs---l~~l~~a----~~eeL~~i~GIG~~~a~~I~~ 74 (78)
T 1kft_A 24 SSLETIEGVGPKRRQMLLKYM--GG---LQGLRNA----SVEEIAKVPGISQGLAEKIFW 74 (78)
T ss_dssp CGGGGCTTCSSSHHHHHHHHH--SC---HHHHHHC----CHHHHTTSSSTTSHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHc--CC---HHHHHHC----CHHHHHHCCCCCHHHHHHHHH
Confidence 458899999999999988764 44 4444432 234677999999999999975
No 63
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=96.32 E-value=0.0031 Score=60.06 Aligned_cols=52 Identities=15% Similarity=0.281 Sum_probs=37.8
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhCCchhhH-HHHhhchhHHHHHHhcccCCCHHHHHHHHH
Q 010406 255 QVKGLPGIGKSMQDHIQEIVTTGKLSKLE-HFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (511)
Q Consensus 255 ~l~~lpgIG~~ia~kI~Eil~tG~~~~le-~l~~~~~~~~l~lf~~I~GvGpktA~~l~~ 313 (511)
.|.+++|||+++|..|.+.+.. ..+. .+.+ .-.+.|++|||||+|||+++..
T Consensus 89 ~L~sv~GIGpk~A~~Ils~~~~---~~l~~aI~~----~d~~~L~~vpGIG~KtA~rIi~ 141 (212)
T 2ztd_A 89 TLLSVSGVGPRLAMAALAVHDA---PALRQVLAD----GNVAALTRVPGIGKRGAERMVL 141 (212)
T ss_dssp HHHTSTTCCHHHHHHHHHHSCH---HHHHHHHHT----TCHHHHHTSTTCCHHHHHHHHH
T ss_pred HhcCcCCcCHHHHHHHHHhCCH---HHHHHHHHh----CCHHHHhhCCCCCHHHHHHHHH
Confidence 4777999999999998875433 2332 1222 2345678999999999999975
No 64
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=96.29 E-value=0.005 Score=50.21 Aligned_cols=52 Identities=17% Similarity=0.337 Sum_probs=38.7
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhcccCCCHHHHHHHHHh
Q 010406 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK 314 (511)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~ 314 (511)
..|.+|||||+..+.+|.+.. |. ++.+.+.. .+.|.+|+|||+++|.+++..
T Consensus 19 ~~L~~IpgIG~~~A~~Ll~~f--gs---l~~l~~a~----~~eL~~i~GIG~~~a~~I~~~ 70 (89)
T 1z00_A 19 ECLTTVKSVNKTDSQTLLTTF--GS---LEQLIAAS----REDLALCPGLGPQKARRLFDV 70 (89)
T ss_dssp HHHTTSSSCCHHHHHHHHHHT--CB---HHHHHHCC----HHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHHC--CC---HHHHHhCC----HHHHHhCCCCCHHHHHHHHHH
Confidence 458899999999999887753 44 34444322 345679999999999999863
No 65
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=96.25 E-value=0.0022 Score=60.77 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=38.0
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhcccCCCHHHHHHHHH
Q 010406 255 QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (511)
Q Consensus 255 ~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~ 313 (511)
.|.++||||+++|..|-.......+ .+.+. ....+.|++|||||+|||++++.
T Consensus 74 ~L~~V~GIGpk~A~~iL~~f~~~~l--~~aI~----~~d~~~L~~vpGIG~K~A~rI~~ 126 (203)
T 1cuk_A 74 ELIKTNGVGPKLALAILSGMSAQQF--VNAVE----REEVGALVKLPGIGKKTAERLIV 126 (203)
T ss_dssp HHHHSSSCCHHHHHHHHHHSCHHHH--HHHHH----TTCHHHHHTSTTCCHHHHHHHHH
T ss_pred HHhcCCCcCHHHHHHHHhhCChHHH--HHHHH----hCCHHHHhhCCCCCHHHHHHHHH
Confidence 4667999999999998765432111 22333 23456788999999999999975
No 66
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=96.24 E-value=0.0078 Score=66.54 Aligned_cols=87 Identities=17% Similarity=0.291 Sum_probs=64.8
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhcccCCCHHHHHHHHHhCCCCHHHHhhcc--Ccchh
Q 010406 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHS 331 (511)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~Gi~tledL~~~~--~L~~~ 331 (511)
++|..++|+|++.+++|.+=++.-+-..| .+.+--| .|+|||+++|+.|.+. +.|++.|.++. .|...
T Consensus 480 ~~L~~l~gfG~Ksa~nLl~aIe~sk~~~l--------~R~L~al-gi~~VG~~~Ak~La~~-Fgsl~~l~~As~eeL~~i 549 (671)
T 2owo_A 480 GKLTGLERMGPKSAQNVVNALEKAKETTF--------ARFLYAL-GIREVGEATAAGLAAY-FGTLEALEAASIEELQKV 549 (671)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHHHHTBCCH--------HHHHHHT-TCTTCCHHHHHHHHHH-HCSHHHHHTCCHHHHTTS
T ss_pred HHhhcccccchhHHHHHHHHHHHHhcCCh--------hheehhh-cccCccHHHHHHHHHH-cCCHHHHHhCCHHHHhhc
Confidence 67899999999999999876664222222 2334444 9999999999999886 67899998653 57788
Q ss_pred hhhcccchhhhccCcCHHH
Q 010406 332 QRLGLKYFDDIKTRIPRHE 350 (511)
Q Consensus 332 q~~Glk~~~d~~~~i~r~e 350 (511)
.++|.+..+.|..-+.-++
T Consensus 550 ~GIG~~~A~sI~~ff~~~~ 568 (671)
T 2owo_A 550 PDVGIVVASHVHNFFAEES 568 (671)
T ss_dssp TTCCHHHHHHHHHHHTCHH
T ss_pred CCCCHHHHHHHHHHHHhHH
Confidence 8999888877766554333
No 67
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=96.17 E-value=0.0028 Score=50.09 Aligned_cols=47 Identities=19% Similarity=0.364 Sum_probs=37.3
Q ss_pred HHHHHhcccCCCHHHHHHHHHh-CCCCHHHHhhccCcchhhhhcccchhhhccC
Q 010406 293 TISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNEDSLTHSQRLGLKYFDDIKTR 345 (511)
Q Consensus 293 ~l~lf~~I~GvGpktA~~l~~~-Gi~tledL~~~~~L~~~q~~Glk~~~d~~~~ 345 (511)
....|.+|+|||+++|+++++. ++.|++||.+ ..++|.+.++.+...
T Consensus 25 ~~~~L~~ipGIG~~~A~~Il~~r~~~s~~eL~~------v~Gig~k~~~~i~~~ 72 (75)
T 2duy_A 25 SLEELMALPGIGPVLARRIVEGRPYARVEDLLK------VKGIGPATLERLRPY 72 (75)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHTCCCSSGGGGGG------STTCCHHHHHHHGGG
T ss_pred CHHHHHhCCCCCHHHHHHHHHHcccCCHHHHHh------CCCCCHHHHHHHHHh
Confidence 4556779999999999999998 8889888874 567777777766543
No 68
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=96.16 E-value=0.011 Score=56.46 Aligned_cols=85 Identities=9% Similarity=0.091 Sum_probs=58.1
Q ss_pred CCCCCCeEEEEecCCCcchHHHHHHHHHHhcCCEEEeecCC-----------C-c-cEEEEcCChH-HHHHHHHHhhhcc
Q 010406 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSK-----------K-V-THVLAMDLEA-LLQQVSKQHLARF 81 (511)
Q Consensus 16 ~~~F~g~~iy~~~~~~g~~r~~~l~~~~~~~Gg~v~~~~s~-----------~-V-THVV~~~~s~-~~~~l~~~~~~~~ 81 (511)
..+|.|+.||+.+.-.+. ...++.++..+||+|+..... . . ..||+.+.+. ..+.+. +.
T Consensus 120 ~~LF~G~~f~it~~~~~~--~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~~~~~~ivis~~~d~~~~~~~~-----~~ 192 (219)
T 3sqd_A 120 SPLFKAKYFYITPGICPS--LSTMKAIVECAGGKVLSKQPSFRKLMEHKQNSSLSEIILISCENDLHLCREYF-----AR 192 (219)
T ss_dssp SCTTTTEEEEECTTCSSC--HHHHHHHHHHTTCEEESSCCCHHHHHHHHHCTTSCEEEEEECGGGGGGGHHHH-----HT
T ss_pred ccccCCcEEEEeCCCCCC--HHHHHHHHHHCCCEEECCCCchHHhhhhhcccCCCCEEEEecccHHHHHHHHH-----HC
Confidence 469999999998764443 467899999999999988642 1 2 2333332222 222221 12
Q ss_pred CCcccccchHHHHHhcCCCCCcccccc
Q 010406 82 KGSVIRYQWLEDSLRLGEKVSEDLYRI 108 (511)
Q Consensus 82 ~~~iV~~~Wl~ecik~g~lvde~~y~l 108 (511)
+..|++.+|+.+||=..++ |-+.|.+
T Consensus 193 ~~~v~s~E~il~~Il~q~l-d~~~~~~ 218 (219)
T 3sqd_A 193 GIDVHNAEFVLTGVLTQTL-DYESYKF 218 (219)
T ss_dssp TCCCEETHHHHHHHHHTCC-CTTTSBC
T ss_pred CCcEEeHHHHHHHHHheee-cchhccc
Confidence 6789999999999996554 8888876
No 69
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=96.14 E-value=0.0059 Score=50.09 Aligned_cols=51 Identities=18% Similarity=0.354 Sum_probs=38.3
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhcccCCCHHHHHHHHH
Q 010406 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (511)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~ 313 (511)
..|.+|||||+..+.+|.+.. |.+ +.+.... .+.|.+|+|||+++|.++++
T Consensus 32 ~~L~~IpgIG~~~A~~Ll~~f--gs~---~~l~~as----~~eL~~i~GIG~~~a~~I~~ 82 (91)
T 2a1j_B 32 ECLTTVKSVNKTDSQTLLTTF--GSL---EQLIAAS----REDLALCPGLGPQKARRLFD 82 (91)
T ss_dssp HHHTTSTTCCHHHHHHHHHHH--SSH---HHHHSCC----HHHHHTSSSCCSHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHHC--CCH---HHHHhCC----HHHHHhCCCCCHHHHHHHHH
Confidence 357899999999999887754 443 4444322 34567999999999999976
No 70
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=96.10 E-value=0.0053 Score=67.82 Aligned_cols=84 Identities=19% Similarity=0.292 Sum_probs=62.5
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhcccCCCHHHHHHHHHhCCCCHHHHhhcc--Ccchh
Q 010406 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHS 331 (511)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~Gi~tledL~~~~--~L~~~ 331 (511)
++|..++|+|++.+++|.+=++.-+-..+ ...+--| +|+|||+++|+.|.+. +.|++.|.++. .|...
T Consensus 475 e~L~~l~g~G~Ksa~nLl~aIe~sk~~~l--------~R~L~al-GI~~VG~~~Ak~La~~-Fgsl~~l~~As~eeL~~I 544 (667)
T 1dgs_A 475 EDLLGLERMGEKSAQNLLRQIEESKHRGL--------ERLLYAL-GLPGVGEVLARNLARR-FGTMDRLLEASLEELIEV 544 (667)
T ss_dssp HHHHTTSSCCSTTHHHHHHHHHHGGGCCH--------HHHHHHT-TCSSCCHHHHHHHHHT-TSBHHHHTTCCHHHHHTS
T ss_pred HHHhcccccchhhHHHHHHHHHHHhcCcH--------HHhhHhh-ccCCccHHHHHHHHHH-cCCHHHHHhCCHHHHHhc
Confidence 57899999999999999876654222211 2234444 9999999999999875 67899997653 47788
Q ss_pred hhhcccchhhhccCcC
Q 010406 332 QRLGLKYFDDIKTRIP 347 (511)
Q Consensus 332 q~~Glk~~~d~~~~i~ 347 (511)
.++|.+..+.|...+.
T Consensus 545 ~GIG~~~A~sI~~ff~ 560 (667)
T 1dgs_A 545 EEVGELTARAILETLK 560 (667)
T ss_dssp TTCCHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHHh
Confidence 8999888887766553
No 71
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=96.06 E-value=0.0014 Score=54.82 Aligned_cols=48 Identities=17% Similarity=0.244 Sum_probs=39.0
Q ss_pred HHHHHhcccCCCHHHHHHHHHh-CCCCHHHHhhccCcchhhhhcccchhhhccCc
Q 010406 293 TISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRI 346 (511)
Q Consensus 293 ~l~lf~~I~GvGpktA~~l~~~-Gi~tledL~~~~~L~~~q~~Glk~~~d~~~~i 346 (511)
..+.|+.||||||++|+++.+. +|+|++||.+ ..++|.+.++.+...+
T Consensus 24 s~~eL~~lpGIG~~~A~~IV~~GpF~s~edL~~------V~Gig~~~~e~l~~~l 72 (97)
T 3arc_U 24 NIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLN------IPGLTERQKQILRENL 72 (97)
T ss_dssp CGGGGGGSTTCTTHHHHHHHHHCCCSSGGGGGG------CTTCCHHHHHHHHHTG
T ss_pred CHHHHhHCCCCCHHHHHHHHHcCCCCCHHHHHh------ccCCCHHHHHHHHHHh
Confidence 4567889999999999999998 7999999985 5677877777765433
No 72
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=95.56 E-value=0.0098 Score=48.73 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=38.0
Q ss_pred hhHHHHHHhcccCCCHHHHHHHHHhCCCCHHHHhhcc--Ccchhhhhcccchhhh
Q 010406 290 KVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDI 342 (511)
Q Consensus 290 ~~~~l~lf~~I~GvGpktA~~l~~~Gi~tledL~~~~--~L~~~q~~Glk~~~d~ 342 (511)
....+..|+.|+|||+++|++|++. +.|+++|..+. .|....++|.+..+.|
T Consensus 27 ~~~~~~~L~~IpgIG~~~A~~Ll~~-fgs~~~l~~as~~eL~~i~GIG~~~a~~I 80 (91)
T 2a1j_B 27 VSRVTECLTTVKSVNKTDSQTLLTT-FGSLEQLIAASREDLALCPGLGPQKARRL 80 (91)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHHHHH-HSSHHHHHSCCHHHHHTSSSCCSHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH-CCCHHHHHhCCHHHHHhCCCCCHHHHHHH
Confidence 3445667779999999999999987 33788887543 4666777776655544
No 73
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}
Probab=95.42 E-value=0.01 Score=53.34 Aligned_cols=48 Identities=17% Similarity=0.317 Sum_probs=37.7
Q ss_pred CCCC-CeEEEEecCCCc-c---------hHHHHHHHHHHhcCCEEEeecCCCccEEEEc
Q 010406 17 GIFA-GMRVFLVEKGVQ-N---------RRLQIWRQKLVQMGATVEEKLSKKVTHVLAM 64 (511)
Q Consensus 17 ~~F~-g~~iy~~~~~~g-~---------~r~~~l~~~~~~~Gg~v~~~~s~~VTHVV~~ 64 (511)
-+|+ +++|||...... . .+...+++.+...||+|+.-++..|||||+.
T Consensus 57 kifk~~~vfYFDt~~~~~~~~~~k~kl~K~~~llkr~f~~LGA~I~~FFd~~VTiVIT~ 115 (160)
T 3qbz_A 57 KIMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITR 115 (160)
T ss_dssp HHHHHHCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHTTTCEEESSCCTTCCEEEES
T ss_pred HhCccCcEEEecCCChhhhhHHHHHHHHHHHHHHHHHHHHcCCEeeeeccCCeEEEEec
Confidence 4788 899999866432 1 1235566788999999999999999999984
No 74
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=95.30 E-value=0.0057 Score=53.69 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=34.1
Q ss_pred HHHHHhcccCCCHHHHHHHHHh-CCCCHHHHhhccCcchhhhhcccchhh
Q 010406 293 TISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNEDSLTHSQRLGLKYFDD 341 (511)
Q Consensus 293 ~l~lf~~I~GvGpktA~~l~~~-Gi~tledL~~~~~L~~~q~~Glk~~~d 341 (511)
..+.|+++|||||++|+++.+. .+.|+|||.+ ..++|-+.++.
T Consensus 61 ~~~eL~~LpGiGp~~A~~II~~GpF~svedL~~------V~GIg~k~~e~ 104 (134)
T 1s5l_U 61 NIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLN------IPGLTERQKQI 104 (134)
T ss_dssp CGGGGGGSTTCTHHHHHHHHHTCCCSSGGGGGG------CTTCCHHHHHH
T ss_pred CHHHHHHCCCCCHHHHHHHHHcCCCCCHHHHHh------CCCCCHHHHHH
Confidence 4556779999999999999987 7999999986 45677554333
No 75
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=95.19 E-value=0.015 Score=47.30 Aligned_cols=50 Identities=18% Similarity=0.211 Sum_probs=36.2
Q ss_pred hHHHHHHhcccCCCHHHHHHHHHhCCCCHHHHhhcc--Ccchhhhhcccchhh
Q 010406 291 VRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDD 341 (511)
Q Consensus 291 ~~~l~lf~~I~GvGpktA~~l~~~Gi~tledL~~~~--~L~~~q~~Glk~~~d 341 (511)
......|..|+|||+++|++|++. +.|+++|..+. .|....++|.+..+.
T Consensus 15 ~~~~~~L~~IpgIG~~~A~~Ll~~-fgsl~~l~~a~~~eL~~i~GIG~~~a~~ 66 (89)
T 1z00_A 15 SRVTECLTTVKSVNKTDSQTLLTT-FGSLEQLIAASREDLALCPGLGPQKARR 66 (89)
T ss_dssp HHHHHHHTTSSSCCHHHHHHHHHH-TCBHHHHHHCCHHHHHTSTTCCHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHH-CCCHHHHHhCCHHHHHhCCCCCHHHHHH
Confidence 345667779999999999999986 44788887543 366666677554443
No 76
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=95.09 E-value=0.014 Score=48.37 Aligned_cols=31 Identities=29% Similarity=0.335 Sum_probs=28.1
Q ss_pred HHhcccCCCHHHHHHHHHhCCCCHHHHhhcc
Q 010406 296 LFGEVWGIGPATAQKLYEKGHRTLDDLKNED 326 (511)
Q Consensus 296 lf~~I~GvGpktA~~l~~~Gi~tledL~~~~ 326 (511)
-|+.+|+|||++++.|++.||.|++||+..+
T Consensus 5 ~L~~LPNiG~~~e~~L~~vGI~s~e~L~~~G 35 (93)
T 3bqs_A 5 NLSELPNIGKVLEQDLIKAGIKTPVELKDVG 35 (93)
T ss_dssp CGGGSTTCCHHHHHHHHHTTCCSHHHHHHHH
T ss_pred HhhcCCCCCHHHHHHHHHcCCCCHHHHHhCC
Confidence 4679999999999999999999999999654
No 77
>3oq0_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.70A {Saccharomyces cerevisiae}
Probab=95.07 E-value=0.029 Score=50.02 Aligned_cols=47 Identities=15% Similarity=0.318 Sum_probs=39.0
Q ss_pred CC-CCeEEEEecCCCc----------chHHHHHHHHHHhcCCEEEeecCCCccEEEEc
Q 010406 18 IF-AGMRVFLVEKGVQ----------NRRLQIWRQKLVQMGATVEEKLSKKVTHVLAM 64 (511)
Q Consensus 18 ~F-~g~~iy~~~~~~g----------~~r~~~l~~~~~~~Gg~v~~~~s~~VTHVV~~ 64 (511)
|. ++-+|||...+.. ..+.+.|++.+...||.|++-++..|||||..
T Consensus 20 IM~r~s~iYFdt~~~~~~~~~~~~~l~k~~~llkk~f~~LGa~I~~FFd~~VTiIITr 77 (151)
T 3oq0_A 20 HMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITR 77 (151)
T ss_dssp -CCCCCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHHHTCEEESSCCTTCCEEEES
T ss_pred HhccCCEEEEeCCCcchhhHHHHHHHHHHHHHHHHHHHHcCCEEeeecCCceEEEEeC
Confidence 44 8999999977542 23567888999999999999999999999985
No 78
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=94.78 E-value=0.0072 Score=48.02 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=36.8
Q ss_pred HHHHhcccCCCHHHHHHHHHhCCCCHHHHhhcc--Ccchhhhhcccchhhhc
Q 010406 294 ISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDIK 343 (511)
Q Consensus 294 l~lf~~I~GvGpktA~~l~~~Gi~tledL~~~~--~L~~~q~~Glk~~~d~~ 343 (511)
...|..|+||||++|++|++. +.|+++|..+. .|....++|.+..+.|.
T Consensus 23 ~~~L~~I~gIG~~~A~~Ll~~-fgsl~~l~~a~~eeL~~i~GIG~~~a~~I~ 73 (78)
T 1kft_A 23 TSSLETIEGVGPKRRQMLLKY-MGGLQGLRNASVEEIAKVPGISQGLAEKIF 73 (78)
T ss_dssp CCGGGGCTTCSSSHHHHHHHH-HSCHHHHHHCCHHHHTTSSSTTSHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHH-cCCHHHHHHCCHHHHHHCCCCCHHHHHHHH
Confidence 334679999999999999998 44799888653 46677778876665543
No 79
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=94.70 E-value=0.014 Score=45.39 Aligned_cols=49 Identities=12% Similarity=0.204 Sum_probs=36.3
Q ss_pred HHHHHhcccCCCHHHHHHHHHhCCCCHHHHhhcc--Ccchhhhhcccchhhh
Q 010406 293 TISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDI 342 (511)
Q Consensus 293 ~l~lf~~I~GvGpktA~~l~~~Gi~tledL~~~~--~L~~~q~~Glk~~~d~ 342 (511)
....|+.|+|||+++|++|++. +.|+++|..+. .|....++|.+..+.|
T Consensus 12 ~~~~L~~i~giG~~~a~~Ll~~-fgs~~~l~~a~~~~L~~i~Gig~~~a~~i 62 (75)
T 1x2i_A 12 QRLIVEGLPHVSATLARRLLKH-FGSVERVFTASVAELMKVEGIGEKIAKEI 62 (75)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHH-HCSHHHHHHCCHHHHTTSTTCCHHHHHHH
T ss_pred HHHHHcCCCCCCHHHHHHHHHH-cCCHHHHHhCCHHHHhcCCCCCHHHHHHH
Confidence 4556779999999999999985 56788887543 4666677776655444
No 80
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=94.70 E-value=0.029 Score=53.27 Aligned_cols=51 Identities=29% Similarity=0.487 Sum_probs=38.4
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhcccCCCHHHHHHHHHh
Q 010406 255 QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK 314 (511)
Q Consensus 255 ~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~ 314 (511)
.|.+|||||+..|..|.+.. |+ ++.+.+.. .+.|.+|+|||+++|+++++.
T Consensus 163 ~L~~i~gVg~~~a~~Ll~~f--gs---~~~l~~a~----~e~L~~v~GiG~~~a~~i~~~ 213 (219)
T 2bgw_A 163 ILQSFPGIGRRTAERILERF--GS---LERFFTAS----KAEISKVEGIGEKRAEEIKKI 213 (219)
T ss_dssp HHHTSTTCCHHHHHHHHHHH--SS---HHHHTTCC----HHHHHHSTTCCHHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHc--CC---HHHHHhCC----HHHHhhCCCCCHHHHHHHHHH
Confidence 47899999999999988754 33 44444322 235679999999999999863
No 81
>3oq4_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.40A {Saccharomyces cerevisiae}
Probab=94.61 E-value=0.056 Score=47.34 Aligned_cols=47 Identities=15% Similarity=0.316 Sum_probs=39.3
Q ss_pred CCCCeEEEEecCCCc----------chHHHHHHHHHHhcCCEEEeecCCCccEEEEc
Q 010406 18 IFAGMRVFLVEKGVQ----------NRRLQIWRQKLVQMGATVEEKLSKKVTHVLAM 64 (511)
Q Consensus 18 ~F~g~~iy~~~~~~g----------~~r~~~l~~~~~~~Gg~v~~~~s~~VTHVV~~ 64 (511)
|=+..+|||..+... ..|.+.|++-+...||.|++-++..|||||..
T Consensus 4 m~r~s~iyfd~~~~~~~~~~~~~k~~k~~~llk~~f~~LGa~I~~FFd~~VTiiITr 60 (134)
T 3oq4_A 4 MKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITR 60 (134)
T ss_dssp CCTTCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHHTTCEEESSCCTTCCEEEES
T ss_pred ccccceEEecCCchHHHHHHHHHhhHHHHHHHHHHHHHcCCEEeeecCCceEEEEeC
Confidence 557889999977422 13668999999999999999999999999985
No 82
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=94.12 E-value=0.023 Score=53.22 Aligned_cols=76 Identities=13% Similarity=0.232 Sum_probs=44.2
Q ss_pred HHHHHHHHhCCchhhHHHHhhch-hHHHHHHhcccCCCHHHHHHHHHh----CCCCHHHHhhc--cCcchhhhhcccchh
Q 010406 268 DHIQEIVTTGKLSKLEHFEKDEK-VRTISLFGEVWGIGPATAQKLYEK----GHRTLDDLKNE--DSLTHSQRLGLKYFD 340 (511)
Q Consensus 268 ~kI~Eil~tG~~~~le~l~~~~~-~~~l~lf~~I~GvGpktA~~l~~~----Gi~tledL~~~--~~L~~~q~~Glk~~~ 340 (511)
..|+++++...-..++-+....+ ...+..|..+|||||++|+++.+. .++|++||.+. |-=....-+|-+.++
T Consensus 104 ~~v~~iV~~~E~~fv~f~n~a~pITA~~~eL~~LpGIG~k~A~~IIeyRe~G~F~s~eDL~~RV~GIg~~~~~Ig~r~le 183 (205)
T 2i5h_A 104 YVIEHIIKQDEKKYVDFFNKADSITTRMHQLELLPGVGKKMMWAIIEERKKRPFESFEDIAQRVKGIQRPEKLIVSRIIY 183 (205)
T ss_dssp HHHHHHHHTTHHHHHHHHC--CCBCSSSBGGGGSTTCCHHHHHHHHHHHHHSCCCSHHHHHHHSTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhchhhhhhhccccCCccCCHHHHhcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHhcCCCCcchhHHHHHHHH
Confidence 44566665544333332222222 114456679999999999999863 69999999752 111122336666666
Q ss_pred hhc
Q 010406 341 DIK 343 (511)
Q Consensus 341 d~~ 343 (511)
.+.
T Consensus 184 ~lk 186 (205)
T 2i5h_A 184 EIK 186 (205)
T ss_dssp HHH
T ss_pred Hhh
Confidence 653
No 83
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=94.12 E-value=0.074 Score=51.21 Aligned_cols=62 Identities=11% Similarity=0.097 Sum_probs=44.6
Q ss_pred hhhcCCCCCCHHHHHHHHH---HHHhCCchhhHHHHhhchhHHHHHHhcccCCCHHHHHHHHHhCC
Q 010406 254 DQVKGLPGIGKSMQDHIQE---IVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH 316 (511)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~E---il~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~Gi 316 (511)
++|..+ |+|..=++-|.+ .+..|.++.++.+..-....+++.|++|+||||+||..+---++
T Consensus 107 e~Lr~~-Gl~~~Ka~~l~~~A~~~~~g~~p~l~~l~~~~~~~~~~~L~~l~GIG~~TA~~ill~al 171 (232)
T 4b21_A 107 ETLHEC-GFSKLKSQEIHIVAEAALNKQIPSKSEIEKMSEEELMESLSKIKGVKRWTIEMYSIFTL 171 (232)
T ss_dssp HHHHTT-TCCHHHHHHHHHHHHHHHTTCSCCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHHTS
T ss_pred HHHHHc-CCcHHHHHHHHHHHHHHHhCCCCCHHHHHcCCHHHHHHHHHhCCCcCHHHHHHHHHHhC
Confidence 445553 888764554444 44568887777777666667899999999999999998865443
No 84
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=94.06 E-value=0.033 Score=60.82 Aligned_cols=53 Identities=15% Similarity=0.277 Sum_probs=42.0
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhcccCCCHHHHHHH
Q 010406 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 311 (511)
Q Consensus 252 s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l 311 (511)
...+|.+|||||+++|.+|.+ . .+..+++|.+....+ .+++|+|||+|||+++
T Consensus 95 ~~~~L~~v~GVGpk~A~~i~~---~-G~~s~edL~~a~~~~---~L~~~~GiG~Ktaq~I 147 (578)
T 2w9m_A 95 GLLDLLGVRGLGPKKIRSLWL---A-GIDSLERLREAAESG---ELAGLKGFGAKSAATI 147 (578)
T ss_dssp HHHHHTTSTTCCHHHHHHHHH---T-TCCSHHHHHHHHHHT---TTTTSTTCCHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHH---c-CCCCHHHHHHHHhhC---ccccCCCCCHHHHHHH
Confidence 467899999999999999875 3 556777776533222 6779999999999999
No 85
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=93.95 E-value=0.057 Score=58.82 Aligned_cols=83 Identities=18% Similarity=0.292 Sum_probs=64.0
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhcccCCCHHHHHHHHHhCCCCHHHHhhcc--Ccchh
Q 010406 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHS 331 (511)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~Gi~tledL~~~~--~L~~~ 331 (511)
++|.+|+|+|++.+++|.+=++.-+-..| .+.|--| +|++||.++|+.|-+ .+.|++.|.++. .|..+
T Consensus 480 ~~L~~l~g~geKsa~nL~~aIe~sk~~~l--------~r~l~aL-GI~~vG~~~a~~La~-~f~sl~~l~~a~~e~l~~i 549 (586)
T 4glx_A 480 GKLTGLERMGPKSAQNVVNALEKAKETTF--------ARFLYAL-GIREVGEATAAGLAA-YFGTLEALEAASIEELQKV 549 (586)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHHHHTBCCH--------HHHHHHT-TCTTCCHHHHHHHHH-HHCSHHHHHHCCHHHHTTS
T ss_pred HHHhcccCccHHHHHHHHHHHHHHcCCCH--------HHHHHHc-CCCchhHHHHHHHHH-HcCCHHHHHccCHHHHhcC
Confidence 78999999999999999876654333333 3345566 999999999998865 466999998653 58888
Q ss_pred hhhcccchhhhccCc
Q 010406 332 QRLGLKYFDDIKTRI 346 (511)
Q Consensus 332 q~~Glk~~~d~~~~i 346 (511)
.++|.+..+.+..-+
T Consensus 550 ~giG~~~A~si~~ff 564 (586)
T 4glx_A 550 PDVGIVVASHVHNFF 564 (586)
T ss_dssp TTCCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHH
Confidence 899988887776654
No 86
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=93.84 E-value=0.044 Score=45.27 Aligned_cols=31 Identities=29% Similarity=0.335 Sum_probs=28.4
Q ss_pred HHhcccCCCHHHHHHHHHhCCCCHHHHhhcc
Q 010406 296 LFGEVWGIGPATAQKLYEKGHRTLDDLKNED 326 (511)
Q Consensus 296 lf~~I~GvGpktA~~l~~~Gi~tledL~~~~ 326 (511)
-|+.+|.|||++++.|++-||.|++||+..+
T Consensus 5 ~L~dLPNig~~~e~~L~~~GI~t~~~Lr~~G 35 (93)
T 3mab_A 5 NLSELPNIGKVLEQDLIKAGIKTPVELKDVG 35 (93)
T ss_dssp CGGGSTTCCHHHHHHHHHTTCCSHHHHHHHC
T ss_pred HHhhCCCCCHHHHHHHHHcCCCCHHHHHhCC
Confidence 4679999999999999999999999999765
No 87
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=93.66 E-value=0.012 Score=57.12 Aligned_cols=54 Identities=24% Similarity=0.445 Sum_probs=0.0
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhcccCCCHHHHHHHHHh
Q 010406 253 ADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK 314 (511)
Q Consensus 253 ~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~ 314 (511)
..+|..|||||++.+.+|.+. | +..++.|.+ ...+.|.+|+|||+++|+++++.
T Consensus 14 ~~~L~~IpGIGpk~a~~Ll~~---g-f~sve~L~~----a~~~eL~~v~GIG~ktAe~I~~~ 67 (241)
T 1vq8_Y 14 YTELTDISGVGPSKAESLREA---G-FESVEDVRG----ADQSALADVSGIGNALAARIKAD 67 (241)
T ss_dssp --------------------------------------------------------------
T ss_pred hhHHhcCCCCCHHHHHHHHHc---C-CCCHHHHHh----CCHHHHHhccCCCHHHHHHHHHH
Confidence 357899999999999998875 2 233555542 23456679999999999999764
No 88
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=93.65 E-value=0.1 Score=50.09 Aligned_cols=55 Identities=20% Similarity=0.240 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHH---HHHhCCchhhHHHHhhchhHHHHHHhcccCCCHHHHHHHHHhC
Q 010406 261 GIGKSMQDHIQE---IVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKG 315 (511)
Q Consensus 261 gIG~~ia~kI~E---il~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~G 315 (511)
|++..=++-|.+ .+..|.+..++.+..-....+++.|++|+||||+||..+---+
T Consensus 102 G~~~rKa~~i~~~A~~~~~g~~p~~~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~~ 159 (228)
T 3s6i_A 102 GFSARKIDSLKSIAEATISGLIPTKEEAERLSNEELIERLTQIKGIGRWTVEMLLIFS 159 (228)
T ss_dssp TCCHHHHHHHHHHHHHHHHTSSCCHHHHTTSCHHHHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCCCChHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHh
Confidence 777764444443 4457888777888776667789999999999999999886543
No 89
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=93.60 E-value=0.12 Score=49.32 Aligned_cols=84 Identities=11% Similarity=0.108 Sum_probs=53.5
Q ss_pred CCCCCCeEEEEecCCC-cchHHHHHHHHHHhcCCEEEeec----------CCCccEEEEcCChHH-HHHHHHHhhhccCC
Q 010406 16 NGIFAGMRVFLVEKGV-QNRRLQIWRQKLVQMGATVEEKL----------SKKVTHVLAMDLEAL-LQQVSKQHLARFKG 83 (511)
Q Consensus 16 ~~~F~g~~iy~~~~~~-g~~r~~~l~~~~~~~Gg~v~~~~----------s~~VTHVV~~~~s~~-~~~l~~~~~~~~~~ 83 (511)
..+|+|+.||+.+.-. ... .+.++.+++.+||+|...- +++-.+||+.+.+.. ...+.........+
T Consensus 111 ~~LF~G~~f~it~~~~~~p~-~~~l~~iI~~~GG~v~~~p~~~~~~~~~~~~~~~~vis~~~d~~~~~~f~~~~~~~~~~ 189 (220)
T 3l41_A 111 PSLLEDYVVYLTSKTVAPEN-VPAVISIVKSNGGVCSTLNVYNKRLARHLEDGNVVLITCNEDSHIWTNFLDNASQNKTI 189 (220)
T ss_dssp SCTTTTSEEEEETTSSCGGG-HHHHHHHHHHTTCEEEEECSCCHHHHHHHHHCCEEEEECGGGHHHHTTTHHHHTTCTTE
T ss_pred chhhhheeEEEeccccCCCC-CceEEEEEecCCcEechhhHHHHHHHHhcccCCEEEEEeCCcchHHHHhhccccccceE
Confidence 5799999999987652 223 4778999999999999811 012246666533322 12222111112256
Q ss_pred cccccchHHHHHhcCCC
Q 010406 84 SVIRYQWLEDSLRLGEK 100 (511)
Q Consensus 84 ~iV~~~Wl~ecik~g~l 100 (511)
+||+.+|+.+|+=..++
T Consensus 190 ~i~~~e~ll~~il~q~l 206 (220)
T 3l41_A 190 FLQNYDWLIKTVLRQEI 206 (220)
T ss_dssp EEEEHHHHHHHHHHTCC
T ss_pred EEechhHHHHHHHHHHc
Confidence 79999999999986554
No 90
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=93.54 E-value=0.019 Score=54.67 Aligned_cols=53 Identities=19% Similarity=0.222 Sum_probs=41.5
Q ss_pred hhHHHHHHhcccCCCHHHHHHHHHh-CCCCHHH-Hhhc--cCcchhhhhcccchhhh
Q 010406 290 KVRTISLFGEVWGIGPATAQKLYEK-GHRTLDD-LKNE--DSLTHSQRLGLKYFDDI 342 (511)
Q Consensus 290 ~~~~l~lf~~I~GvGpktA~~l~~~-Gi~tled-L~~~--~~L~~~q~~Glk~~~d~ 342 (511)
....+.+|.+|+|||||+|.++... |..+|.. +... ..|++.+++|-|..+.|
T Consensus 83 Er~lf~~L~sv~GIGpk~A~~Ils~~~~~~l~~aI~~~d~~~L~~vpGIG~KtA~rI 139 (212)
T 2ztd_A 83 TRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERM 139 (212)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHH
T ss_pred HHHHHHHhcCcCCcCHHHHHHHHHhCCHHHHHHHHHhCCHHHHhhCCCCCHHHHHHH
Confidence 3457777889999999999999997 8888874 3332 36889999999887654
No 91
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=93.00 E-value=0.061 Score=58.61 Aligned_cols=55 Identities=22% Similarity=0.349 Sum_probs=38.3
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhcccCCCHHHHHHHH
Q 010406 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY 312 (511)
Q Consensus 252 s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~ 312 (511)
...+|.+++|||+++|.+|..-+-.-++..|...-.+.. ++++||||+|||+++.
T Consensus 91 ~~~~l~~v~GvGpk~A~~~~~~lg~~~~~~l~~a~~~~~------l~~~~GiG~k~a~~i~ 145 (575)
T 3b0x_A 91 GVLEVMEVPGVGPKTARLLYEGLGIDSLEKLKAALDRGD------LTRLKGFGPKRAERIR 145 (575)
T ss_dssp HHHHHHTSTTTCHHHHHHHHHTSCCCSHHHHHHHHHHTG------GGGSTTCCHHHHHHHH
T ss_pred HHHHHhcCCCcCHHHHHHHHHhcCCCCHHHHHHHHHcCC------cccCCCCCccHHHHHH
Confidence 357899999999999998865432233444433221111 5799999999999984
No 92
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=92.84 E-value=0.062 Score=42.01 Aligned_cols=51 Identities=24% Similarity=0.307 Sum_probs=40.8
Q ss_pred HHHHHhcccCCCHHHHHHHHHhCCCCHHHHhhc--cCcchhhhhcccchhhhc
Q 010406 293 TISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIK 343 (511)
Q Consensus 293 ~l~lf~~I~GvGpktA~~l~~~Gi~tledL~~~--~~L~~~q~~Glk~~~d~~ 343 (511)
..++|+++.||+...|++|.+.||.|+++|--. ..|....||.-...++|.
T Consensus 4 ~~~~f~~~lgI~e~~a~~L~~~Gf~tve~vA~~~~~eL~~I~G~dE~~a~~l~ 56 (70)
T 1u9l_A 4 AIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALR 56 (70)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHTTCCCHHHHHHSCHHHHTTSTTCCHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHcCcCcHHHHHcCCHHHHhhccCCCHHHHHHHH
Confidence 567899999999999999999999999999853 246666777665555554
No 93
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=92.82 E-value=0.094 Score=39.96 Aligned_cols=30 Identities=10% Similarity=0.226 Sum_probs=24.9
Q ss_pred HHHhcccCCCHHHHHHHHHhCCCCHHHHhhc
Q 010406 295 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (511)
Q Consensus 295 ~lf~~I~GvGpktA~~l~~~Gi~tledL~~~ 325 (511)
..|.+||||||+++++|.+ .+.|+++|.++
T Consensus 4 s~L~~IpGIG~kr~~~LL~-~Fgs~~~i~~A 33 (63)
T 2a1j_A 4 DFLLKMPGVNAKNCRSLMH-HVKNIAELAAL 33 (63)
T ss_dssp HHHHTSTTCCHHHHHHHHH-HCSSHHHHHTC
T ss_pred hHHHcCCCCCHHHHHHHHH-HcCCHHHHHHC
Confidence 4567999999999999996 56688888864
No 94
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=92.82 E-value=0.034 Score=52.05 Aligned_cols=51 Identities=29% Similarity=0.375 Sum_probs=38.0
Q ss_pred HHHHHHhcccCCCHHHHHHHHHh-CCCCHHH-Hhhcc--Ccchhhhhcccchhhh
Q 010406 292 RTISLFGEVWGIGPATAQKLYEK-GHRTLDD-LKNED--SLTHSQRLGLKYFDDI 342 (511)
Q Consensus 292 ~~l~lf~~I~GvGpktA~~l~~~-Gi~tled-L~~~~--~L~~~q~~Glk~~~d~ 342 (511)
..+..|.+|+|||||+|.++... |-.++.+ +.++. .|++.+|+|-|..+.|
T Consensus 69 ~~f~~L~~v~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI 123 (191)
T 1ixr_A 69 ALFELLLSVSGVGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERI 123 (191)
T ss_dssp HHHHHHHSSSCCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSTTCCHHHHHHH
T ss_pred HHHHHHhcCCCcCHHHHHHHHHhCChHHHHHHHHhCCHHHHHhCCCCCHHHHHHH
Confidence 45667779999999999999997 7766654 33332 5888888887776554
No 95
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=92.33 E-value=0.48 Score=44.56 Aligned_cols=123 Identities=15% Similarity=0.170 Sum_probs=72.0
Q ss_pred HHHHHHhcCCccccch--hhhcC-CC--CCC--HHHHHHHHHHHHh---CCchhhHHHHhhchhHHHHHHhcccCCCHHH
Q 010406 238 KAIPVIEKLPFKIESA--DQVKG-LP--GIG--KSMQDHIQEIVTT---GKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307 (511)
Q Consensus 238 rAa~~l~~l~~~i~s~--~~l~~-lp--gIG--~~ia~kI~Eil~t---G~~~~le~l~~~~~~~~l~lf~~I~GvGpkt 307 (511)
+|..+..+||..+... +++.+ |. |+| ..=|+.|.++.+. +.-..++.+....+..+.+.|+++|||||+|
T Consensus 50 ~~~~~~~~L~~~l~~~~~e~l~~~ir~~G~g~~~~KA~~l~~~a~~~~~~~~~~l~~~~~~~~~~~~~~L~~lpGIG~kT 129 (207)
T 3fhg_A 50 SAYQALNCLGQKIYYANEEEIRNILKSCKYRFYNLKAKYIIMAREKVYGRLKEEIKPLADEDQQLARERLLNIKGIGMQE 129 (207)
T ss_dssp HHHHHHHHHGGGGGTCCHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHTTTHHHHHHHHHHHCHHHHHHHHTTSTTCCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCHHHHHHHHHcCCCcCHHH
Confidence 4445555556555433 34332 33 433 3455666665541 1112366666666778999999999999999
Q ss_pred HHHHHHh-CCCCHHHHh-hcc-CcchhhhhcccchhhhccCcCHHHHHHHHHHHHHHhhh
Q 010406 308 AQKLYEK-GHRTLDDLK-NED-SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEE 364 (511)
Q Consensus 308 A~~l~~~-Gi~tledL~-~~~-~L~~~q~~Glk~~~d~~~~i~r~ea~~~~~iv~~~~~~ 364 (511)
|..+-.. |+. +.- -+. -..-++++|+-. +++...++..+-.+++..+...++.
T Consensus 130 A~~il~~~~~~---~~~~vD~~v~Ri~~rlg~~~-~~~~k~~~~k~y~~~~~~l~~~~~~ 185 (207)
T 3fhg_A 130 ASHFLRNVGYF---DLAIIDRHIIDFMRRIGAIG-ETNVKQLSKSLYISFENILKSIASN 185 (207)
T ss_dssp HHHHHHHTTCC---SSCCCCHHHHHHHHHTTSSC-CCCCSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC---CcceecHHHHHHHHHcCCCC-ccccccCCHHHHHHHHHHHHHHHHH
Confidence 9998775 662 222 111 123345566532 1256778888888877776666543
No 96
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=92.26 E-value=0.042 Score=51.93 Aligned_cols=52 Identities=15% Similarity=0.260 Sum_probs=38.7
Q ss_pred hHHHHHHhcccCCCHHHHHHHHHh-CCCCHHH-Hhhcc--Ccchhhhhcccchhhh
Q 010406 291 VRTISLFGEVWGIGPATAQKLYEK-GHRTLDD-LKNED--SLTHSQRLGLKYFDDI 342 (511)
Q Consensus 291 ~~~l~lf~~I~GvGpktA~~l~~~-Gi~tled-L~~~~--~L~~~q~~Glk~~~d~ 342 (511)
...+..|.+|+|||||+|.++... |..+|.+ +.++. .|++.+|+|-|..+.|
T Consensus 69 k~~f~~L~~V~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI 124 (203)
T 1cuk_A 69 RTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERL 124 (203)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHH
T ss_pred HHHHHHHhcCCCcCHHHHHHHHhhCChHHHHHHHHhCCHHHHhhCCCCCHHHHHHH
Confidence 345667779999999999999996 7766654 44332 5888888898876654
No 97
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=92.12 E-value=0.032 Score=61.64 Aligned_cols=48 Identities=27% Similarity=0.404 Sum_probs=41.4
Q ss_pred cccCCCHHHHHHHHHh-CCCCHHHHhhc--cCcchhhhhcccchhhhccCc
Q 010406 299 EVWGIGPATAQKLYEK-GHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRI 346 (511)
Q Consensus 299 ~I~GvGpktA~~l~~~-Gi~tledL~~~--~~L~~~q~~Glk~~~d~~~~i 346 (511)
.|.|+|+|++.+||+. +++|+.||... .+|..+.+||-|..+.|.+.|
T Consensus 445 dI~GLG~k~i~~L~~~g~I~~~~DL~~L~~e~L~~l~g~G~Ksa~nLl~aI 495 (667)
T 1dgs_A 445 DIEGLGEKLIERLLEKGLVRDVADLYHLRKEDLLGLERMGEKSAQNLLRQI 495 (667)
T ss_dssp CCTTCCHHHHHHHHHTTSCSSGGGGGGGCCHHHHTTSSCCSTTHHHHHHHH
T ss_pred CcCcCCHHHHHHHHHcCCCCCHHHHHhcCHHHHhcccccchhhHHHHHHHH
Confidence 8999999999999999 68999999864 357778899999988887554
No 98
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=92.05 E-value=0.15 Score=41.25 Aligned_cols=34 Identities=9% Similarity=0.155 Sum_probs=28.2
Q ss_pred hHHHHHHhcccCCCHHHHHHHHHhCCCCHHHHhhc
Q 010406 291 VRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (511)
Q Consensus 291 ~~~l~lf~~I~GvGpktA~~l~~~Gi~tledL~~~ 325 (511)
.....+|..|||||||++++|.+ .+.|+++|.++
T Consensus 14 ~~~~s~L~~IpGIG~kr~~~LL~-~FgSl~~i~~A 47 (84)
T 1z00_B 14 PGPQDFLLKMPGVNAKNCRSLMH-HVKNIAELAAL 47 (84)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHH-HSSCHHHHHHS
T ss_pred ccHHHHHHhCCCCCHHHHHHHHH-HcCCHHHHHHC
Confidence 44667778999999999999996 67788888864
No 99
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=92.03 E-value=0.1 Score=53.86 Aligned_cols=32 Identities=22% Similarity=0.444 Sum_probs=25.3
Q ss_pred HHHHhcccCCCHHHHHHHHHh-C-C-----CCHHHHhhc
Q 010406 294 ISLFGEVWGIGPATAQKLYEK-G-H-----RTLDDLKNE 325 (511)
Q Consensus 294 l~lf~~I~GvGpktA~~l~~~-G-i-----~tledL~~~ 325 (511)
..++++|+||||.+|++|.+. | + -|.+||+.+
T Consensus 467 eamLtAIaGIGp~tAeRLLEkFGSVe~Vm~AteDELRed 505 (685)
T 4gfj_A 467 YASLISIRGIDRERAERLLKKYGGYSKVREAGVEELRED 505 (685)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHTSHHHHHHSCHHHHHHT
T ss_pred eeeeeccCCCCHHHHHHHHHHhcCHHHHHhCCHHHHHHc
Confidence 468889999999999999987 5 2 366677553
No 100
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=91.93 E-value=0.025 Score=62.52 Aligned_cols=49 Identities=29% Similarity=0.297 Sum_probs=41.2
Q ss_pred hcccCCCHHHHHHHHHh-CCCCHHHHhhc--cCcchhhhhcccchhhhccCc
Q 010406 298 GEVWGIGPATAQKLYEK-GHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRI 346 (511)
Q Consensus 298 ~~I~GvGpktA~~l~~~-Gi~tledL~~~--~~L~~~q~~Glk~~~d~~~~i 346 (511)
+.|+|+|+|++.+||+. +|++++||... .+|..+.+||-|..+.|.+.|
T Consensus 449 ldI~GLG~k~i~~L~~~g~I~~~aDL~~L~~~~L~~l~gfG~Ksa~nLl~aI 500 (671)
T 2owo_A 449 MDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVVNAL 500 (671)
T ss_dssp TCCTTCCHHHHHHHHHTTCCSSGGGGGTCCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHcCCCCCHHHHHhhCHHHhhcccccchhHHHHHHHHH
Confidence 49999999999999999 57999999853 357778899988888887544
No 101
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=91.89 E-value=0.98 Score=45.40 Aligned_cols=63 Identities=17% Similarity=0.214 Sum_probs=46.6
Q ss_pred HHHHHHHhhhcCCCeEEEEccceeecCC-ccCCeeEEEecCCcch-hhhHHHHHHHHHHHhccee
Q 010406 355 ERLLQKAGEEVLPEVIILCGGSYRRGKA-SCGDLDVVIMHPDRKS-HKGFLSKYVKKLKEMKFLR 417 (511)
Q Consensus 355 ~~iv~~~~~~~~p~~~v~~~Gs~RRgke-~~gDvDiLit~~~~~~-~~~~l~~~v~~l~~~g~l~ 417 (511)
-..++++.....|++.|.+-||+++|.- ..+|||++|..|.... ....|..+.+.|++.+...
T Consensus 46 ~~~l~~~~~~~~p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~~~~~~~~l~~l~~~L~~~~~~~ 110 (323)
T 3nyb_A 46 ISTIREAVKQLWPDADLHVFGSYSTDLYLPGSDIDCVVTSELGGKESRNNLYSLASHLKKKNLAT 110 (323)
T ss_dssp HHHHHHHHHTTCTTCCEEEESTTTTTCCCTTSCEEEEECSSCCGGGHHHHHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHHCCCCEEEEeCccccCCCCCCCCceEEEecCCCChhHHHHHHHHHHHHhhCCCce
Confidence 3334455555679999999999999976 4689999998877542 2456777888888877653
No 102
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=91.60 E-value=0.096 Score=40.86 Aligned_cols=29 Identities=31% Similarity=0.384 Sum_probs=26.2
Q ss_pred HhcccCCCHHHHHHHHHhCCCCHHHHhhc
Q 010406 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (511)
Q Consensus 297 f~~I~GvGpktA~~l~~~Gi~tledL~~~ 325 (511)
+.+++|||+.++.+|-+.||.|++||-..
T Consensus 9 l~~L~Gi~~~~~~kL~e~Gi~TvedlA~~ 37 (70)
T 1wcn_A 9 LLNLEGVDRDLAFKLAARGVCTLEDLAEQ 37 (70)
T ss_dssp HHSSTTCCHHHHHHHHTTTCCSHHHHHTS
T ss_pred HHHcCCCCHHHHHHHHHcCCCcHHHHHcC
Confidence 44889999999999999999999999853
No 103
>3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA repair, phospho-peptide, protein binding; HET: SEP; 2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A
Probab=91.41 E-value=0.15 Score=49.34 Aligned_cols=66 Identities=17% Similarity=0.281 Sum_probs=49.9
Q ss_pred HHHHhcCCEEEeecCC--CccEEEEcCChHHHHHHHHHhhhccCC--cccccchHHHHHhc---CC------CCCccccc
Q 010406 41 QKLVQMGATVEEKLSK--KVTHVLAMDLEALLQQVSKQHLARFKG--SVIRYQWLEDSLRL---GE------KVSEDLYR 107 (511)
Q Consensus 41 ~~~~~~Gg~v~~~~s~--~VTHVV~~~~s~~~~~l~~~~~~~~~~--~iV~~~Wl~ecik~---g~------lvde~~y~ 107 (511)
+.+|..|-.|+++.+. .++|+++-.--|..+.+.. + ++.| .+|+++|+++|++. |+ +++.+.|.
T Consensus 41 ~~Lr~LGI~Iv~d~~~~~~~n~LiAPkilRT~KFL~s--L-a~~P~~~il~p~FI~~~Lk~ih~~~~~~~~~~l~~~dY~ 117 (256)
T 3t7k_A 41 EILNQLGIKIFDNIKETDKLNCIFAPKILRTEKFLKS--L-SFEPLKFALKPEFIIDLLKQIHSKKDKLSQININLFDYE 117 (256)
T ss_dssp HHHHHTTEEECSSCCGGGCCCEEECSSCCCBHHHHHH--T-TSTTCCEEECTHHHHHHHHHHC-------CCCCCSSTTB
T ss_pred HHHHHcCeEEEecCcccCCCCEEEcCchhhHHHHHHH--h-ccCccceEeCHHHHHHHHHHhhcCCcccccccCChhhcc
Confidence 7889999999999964 7999999654444555542 1 2233 59999999999999 88 88899999
Q ss_pred cc
Q 010406 108 IK 109 (511)
Q Consensus 108 l~ 109 (511)
+.
T Consensus 118 L~ 119 (256)
T 3t7k_A 118 IN 119 (256)
T ss_dssp CT
T ss_pred CC
Confidence 74
No 104
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=91.04 E-value=0.25 Score=37.54 Aligned_cols=49 Identities=16% Similarity=0.349 Sum_probs=34.5
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhcccCCCHHH-HHHHHH
Q 010406 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT-AQKLYE 313 (511)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpkt-A~~l~~ 313 (511)
+.|.+|||||++-+..+.. .-|.+ +++++- .++.|.+| +|.+. |+++|+
T Consensus 4 s~L~~IpGIG~kr~~~LL~--~Fgs~---~~i~~A----s~eeL~~v--ig~~~~A~~I~~ 53 (63)
T 2a1j_A 4 DFLLKMPGVNAKNCRSLMH--HVKNI---AELAAL----SQDELTSI--LGNAANAKQLYD 53 (63)
T ss_dssp HHHHTSTTCCHHHHHHHHH--HCSSH---HHHHTC----CHHHHHHH--HSCHHHHHHHHH
T ss_pred hHHHcCCCCCHHHHHHHHH--HcCCH---HHHHHC----CHHHHHHH--cCchHHHHHHHH
Confidence 4688999999998887764 34444 444432 24455566 78999 999997
No 105
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=90.77 E-value=0.037 Score=53.09 Aligned_cols=50 Identities=24% Similarity=0.515 Sum_probs=0.0
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhcccCCCHHHHHHHHH
Q 010406 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (511)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~ 313 (511)
..|.+|||||++.+.++.+.. |++..+ .+ -..+.|.+| |||+++|+.+|+
T Consensus 173 s~L~~IpGIG~k~ak~Ll~~F--GSl~~i---~~----As~eeL~~V-GIG~~~A~~I~~ 222 (226)
T 3c65_A 173 SVLDDIPGVGEKRKKALLNYF--GSVKKM---KE----ATVEELQRA-NIPRAVAEKIYE 222 (226)
T ss_dssp ------------------------------------------------------------
T ss_pred ccccccCCCCHHHHHHHHHHh--CCHHHH---Hh----CCHHHHHHc-CCCHHHHHHHHH
Confidence 468999999999999987753 444443 32 234567799 999999999986
No 106
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=90.11 E-value=0.48 Score=45.18 Aligned_cols=59 Identities=19% Similarity=0.315 Sum_probs=38.1
Q ss_pred hhcCCCCCCHHHHHHHHHH---HHhCCchhhHHHHhhchhHHHHHHhcccCCCHHHHHHHHHhC
Q 010406 255 QVKGLPGIGKSMQDHIQEI---VTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKG 315 (511)
Q Consensus 255 ~l~~lpgIG~~ia~kI~Ei---l~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~G 315 (511)
+|..+ |++..=++.|.++ +..|.+ .++.+..-....+++.|++|+||||+||..+---+
T Consensus 105 ~Lr~~-G~~~~KA~~i~~lA~~~~~g~~-~l~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~~ 166 (225)
T 2yg9_A 105 DLRGV-GLSWAKVRTVQAAAAAAVSGQI-DFAHLSGQPDELVIAELVQLPGIGRWTAEMFLLFA 166 (225)
T ss_dssp HHHHT-TCCHHHHHHHHHHHHHHHTTSS-CGGGCTTSCHHHHHHHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHHC-CCcHHHHHHHHHHHHHHHhCCc-CHHHHhcCCHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 44433 6766544444443 345664 34555544555688889999999999999886543
No 107
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=89.94 E-value=0.059 Score=58.90 Aligned_cols=88 Identities=13% Similarity=0.140 Sum_probs=0.0
Q ss_pred hhhcCCCCC------CHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhcccCCCHHHHHHHHHhCCCCHHHHhhcc-
Q 010406 254 DQVKGLPGI------GKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED- 326 (511)
Q Consensus 254 ~~l~~lpgI------G~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~Gi~tledL~~~~- 326 (511)
++|..|+|+ |++.++++.+-++.-+-..| .+.|--| +|+|||+++|+.|.+. +.|++.|.++.
T Consensus 491 ~~L~~l~~~~~~~g~g~ksa~nLl~aIe~sk~~~l--------~r~L~aL-GIp~VG~~~ak~La~~-Fgsle~L~~As~ 560 (615)
T 3sgi_A 491 RDLLRTDLFRTKAGELSANGKRLLVNLDKAKAAPL--------WRVLVAL-SIRHVGPTAARALATE-FGSLDAIAAAST 560 (615)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhccccccccCccchHHHHHHHHHHHhcCCCH--------HHHHHHc-CCCCCCHHHHHHHHHH-cCCHHHHHhCCH
Confidence 567777755 57888777665554332222 3345556 9999999999999654 67899998653
Q ss_pred -CcchhhhhcccchhhhccCcCHHHH
Q 010406 327 -SLTHSQRLGLKYFDDIKTRIPRHEV 351 (511)
Q Consensus 327 -~L~~~q~~Glk~~~d~~~~i~r~ea 351 (511)
.|..+.++|.+..+.|..-+.-++.
T Consensus 561 eeL~~I~GIG~~~A~sI~~ff~~~~n 586 (615)
T 3sgi_A 561 DQLAAVEGVGPTIAAAVTEWFAVDWH 586 (615)
T ss_dssp --------------------------
T ss_pred HHHhhCCCCCHHHHHHHHHHHcCHHH
Confidence 5888889999888888776654443
No 108
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=89.52 E-value=0.36 Score=48.39 Aligned_cols=58 Identities=17% Similarity=0.196 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcCCEEEeec-CCCccEEEEcC--ChH-HHHHHHHHhhhccCCcccccchHHHHHhc
Q 010406 36 LQIWRQKLVQMGATVEEKL-SKKVTHVLAMD--LEA-LLQQVSKQHLARFKGSVIRYQWLEDSLRL 97 (511)
Q Consensus 36 ~~~l~~~~~~~Gg~v~~~~-s~~VTHVV~~~--~s~-~~~~l~~~~~~~~~~~iV~~~Wl~ecik~ 97 (511)
+..|++.+.+.|+.++ .+ ++.+||||+.. ... ..+.+.+-. . +.+||+.+|+.+.-+.
T Consensus 126 ~~~L~~~L~~LGik~v-~~~~detTHlVm~krnT~KvTvK~L~ALI--~-gkPIV~~~Fl~al~~~ 187 (325)
T 3huf_A 126 LSQWASNLNLLGIPTG-LRDSDATTHFVMNRQAGSSITVGTMYAFL--K-KTVIIDDSYLQYLSTV 187 (325)
T ss_dssp HHHHHHHHHTTTCCEE-SSCCTTCCEEECCCCCSSCCCHHHHHHHH--T-TCEEECHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCEEE-EccCCCEEEEEEeccccccchHHHHHHHH--C-CCcEecHHHHHHHHHh
Confidence 3448899999999999 77 78899999963 212 233343221 1 5689999999997543
No 109
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=89.23 E-value=0.19 Score=51.09 Aligned_cols=29 Identities=41% Similarity=0.767 Sum_probs=26.3
Q ss_pred hcccCCCHHHHHHHHHhCCCCHHHHhhcc
Q 010406 298 GEVWGIGPATAQKLYEKGHRTLDDLKNED 326 (511)
Q Consensus 298 ~~I~GvGpktA~~l~~~Gi~tledL~~~~ 326 (511)
..|||||++++++|.+.||+|+.||.+..
T Consensus 181 ~~l~GiG~~~~~~L~~~GI~Ti~dL~~~~ 209 (356)
T 4dez_A 181 DALWGVGPKTTKKLAAMGITTVADLAVTD 209 (356)
T ss_dssp GGSTTCCHHHHHHHHHTTCCSHHHHHTSC
T ss_pred HHHcCCchhHHHHHHHcCCCeecccccCC
Confidence 58999999999999999999999998643
No 110
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=89.15 E-value=0.12 Score=44.31 Aligned_cols=49 Identities=24% Similarity=0.333 Sum_probs=36.8
Q ss_pred HHHHHhcccCCCHHHHHHHHHhCCCCHHHHhhcc--Ccchhhhhcccchhhh
Q 010406 293 TISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDI 342 (511)
Q Consensus 293 ~l~lf~~I~GvGpktA~~l~~~Gi~tledL~~~~--~L~~~q~~Glk~~~d~ 342 (511)
.+..|.++ ||||.++++|.+.||.|+++|.... .|...+++|-...++|
T Consensus 24 ~I~~L~~~-GIg~~~i~kL~eAG~~Tve~va~a~~~eL~~i~GIse~ka~kI 74 (114)
T 1b22_A 24 PISRLEQC-GINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKI 74 (114)
T ss_dssp CHHHHHHT-TCSHHHHHHHHTTCCSSGGGBTSSBHHHHHTTTTCSTTHHHHH
T ss_pred cHHHHHhc-CCCHHHHHHHHHcCcCcHHHHHhCCHHHHHHccCCCHHHHHHH
Confidence 34455455 9999999999999999999998543 4777777775554443
No 111
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=88.81 E-value=0.93 Score=44.89 Aligned_cols=58 Identities=16% Similarity=0.233 Sum_probs=38.7
Q ss_pred hhhcCCCCCCHHHHHHHHHH---HHhCCchhhHHHHhhchhHHHHHHhcccCCCHHHHHHHHHh
Q 010406 254 DQVKGLPGIGKSMQDHIQEI---VTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK 314 (511)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Ei---l~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~ 314 (511)
++|..+ |+|-+ ++-|.++ +..|.+ .++.+..-....+++.|+++|||||+||..+--.
T Consensus 170 e~L~~~-g~g~R-a~~I~~~A~~i~~g~~-~l~~l~~~~~~~~~~~L~~lpGIG~~TA~~ill~ 230 (290)
T 3i0w_A 170 KDFEEC-TAGFR-AKYLKDTVDRIYNGEL-NLEYIKSLNDNECHEELKKFMGVGPQVADCIMLF 230 (290)
T ss_dssp HHHHHT-TCGGG-HHHHHHHHHHHHTTSS-CHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHc-CCchH-HHHHHHHHHHHHhCCC-CHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 445553 67765 4444443 445654 3455555456678899999999999999987654
No 112
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=88.74 E-value=0.19 Score=41.50 Aligned_cols=43 Identities=19% Similarity=0.232 Sum_probs=30.5
Q ss_pred HHHHhcccCCCHHHHHHHHHh-----CCCCHHHHhhccCcchhhhhcccchhhh
Q 010406 294 ISLFGEVWGIGPATAQKLYEK-----GHRTLDDLKNEDSLTHSQRLGLKYFDDI 342 (511)
Q Consensus 294 l~lf~~I~GvGpktA~~l~~~-----Gi~tledL~~~~~L~~~q~~Glk~~~d~ 342 (511)
...|..|+|||+++|+++++. .+.+++||.+ ..++|.+.++.|
T Consensus 39 ~~~L~~ipGIG~~~A~~Il~~r~~~g~f~s~edL~~------v~Gig~k~~~~l 86 (98)
T 2edu_A 39 ARDLRSLQRIGPKKAQLIVGWRELHGPFSQVEDLER------VEGITGKQMESF 86 (98)
T ss_dssp HHHHHHSTTCCHHHHHHHHHHHHHHCCCSSGGGGGG------STTCCHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHhcCCcCCHHHHHh------CCCCCHHHHHHH
Confidence 345679999999999999963 4677777643 345666655554
No 113
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=88.10 E-value=0.26 Score=47.01 Aligned_cols=95 Identities=22% Similarity=0.278 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHh-cccCCCHHHHHHHHHh-CCCCHHHHhhc-cCcchhhhhcccchh
Q 010406 264 KSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFG-EVWGIGPATAQKLYEK-GHRTLDDLKNE-DSLTHSQRLGLKYFD 340 (511)
Q Consensus 264 ~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~-~I~GvGpktA~~l~~~-Gi~tledL~~~-~~L~~~q~~Glk~~~ 340 (511)
..=|..|.++.+. +..+.++.......+++.|+ +++|||||||.-+-.. |.... +--+ .-+.-+.++|+-.
T Consensus 100 ~~KA~~I~~~a~~--ig~l~~~~~~~~~~~r~~L~~~l~GVG~kTA~~vL~~~g~~~~--~~VDthv~Ri~~rlg~~~-- 173 (219)
T 3n0u_A 100 QKRAEFIVENRKL--LGKLKNLVKGDPFQSREFLVRNAKGIGWKEASHFLRNTGVEDL--AILDKHVLRLMKRHGLIQ-- 173 (219)
T ss_dssp HHHHHHHHHHGGG--TTTHHHHHHSCHHHHHHHHHHHSTTCCHHHHHHHHHTTTCCSC--CCCCHHHHHHHHHTTSCS--
T ss_pred HHHHHHHHHHHHH--HHHHHHHhcCCcHHHHHHHHHhCCCCCHHHHHHHHHHcCCCCe--eeecHHHHHHHHHcCCCC--
Confidence 4445555555432 11234444455567899999 9999999999988764 55211 1111 1122344555422
Q ss_pred hhccCcCHHHHHHHHHHHHHHhhh
Q 010406 341 DIKTRIPRHEVEQMERLLQKAGEE 364 (511)
Q Consensus 341 d~~~~i~r~ea~~~~~iv~~~~~~ 364 (511)
.+....+...-.+++..+.+.+.+
T Consensus 174 ~~~k~~t~k~y~~ie~~~~~~a~~ 197 (219)
T 3n0u_A 174 EIPKGWSKKRYLYVEEILRKVAEA 197 (219)
T ss_dssp SCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred cCcCcCCHHHHHHHHHHHHHHHHH
Confidence 233455655556666666665543
No 114
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=87.10 E-value=0.55 Score=52.84 Aligned_cols=50 Identities=16% Similarity=0.278 Sum_probs=40.8
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHH-hCCchhhHHHHhhchhHHHHHHhcccCCCHHHHHHHHH
Q 010406 252 SADQVKGLPGIGKSMQDHIQEIVT-TGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (511)
Q Consensus 252 s~~~l~~lpgIG~~ia~kI~Eil~-tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~ 313 (511)
+.++|..|||||+..|+.|.++.+ .|.+...++|. +|+|+|+++..++-.
T Consensus 506 s~~~L~~v~GiG~~~A~~Iv~yR~~~G~f~sr~~L~------------~V~giG~k~~ekl~~ 556 (785)
T 3bzc_A 506 SAALLARISGLNSTLAQNIVAHRDANGAFRTRDELK------------KVSRLGEKTFEQAAG 556 (785)
T ss_dssp CHHHHHTSTTCCHHHHHHHHHHHHHHCCCSSGGGGG------------GSTTCCHHHHHHHGG
T ss_pred CHHHHhhcCCCCHHHHHHHHHHHHhcCCCCCHHHHH------------hcCCCCHHHHHHhhh
Confidence 457899999999999999999975 57777766653 788999888888765
No 115
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=87.01 E-value=0.31 Score=50.91 Aligned_cols=29 Identities=34% Similarity=0.376 Sum_probs=26.4
Q ss_pred HhcccCCCHHHHHHHHHhCCCCHHHHhhc
Q 010406 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (511)
Q Consensus 297 f~~I~GvGpktA~~l~~~Gi~tledL~~~ 325 (511)
+..|||||++++++|-+.||+|+.||.+.
T Consensus 236 v~~l~GIG~~t~~~L~~lGI~TigdLa~~ 264 (420)
T 3osn_A 236 IKEIPGIGYKTAKCLEALGINSVRDLQTF 264 (420)
T ss_dssp GGGSTTCCHHHHHHHHHTTCCSHHHHHHS
T ss_pred HHHccCCCHHHHHHHHHhCCCcHHHHhhC
Confidence 46899999999999998999999999864
No 116
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=86.97 E-value=0.65 Score=37.44 Aligned_cols=50 Identities=16% Similarity=0.333 Sum_probs=35.1
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhcccCCCHHH-HHHHHHh
Q 010406 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT-AQKLYEK 314 (511)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpkt-A~~l~~~ 314 (511)
+.|..|||||++-+..+.. ..|.+.. +++- .++.|..| ||.+. |+++|+-
T Consensus 18 s~L~~IpGIG~kr~~~LL~--~FgSl~~---i~~A----S~eEL~~v--ig~~~~A~~I~~~ 68 (84)
T 1z00_B 18 DFLLKMPGVNAKNCRSLMH--HVKNIAE---LAAL----SQDELTSI--LGNAANAKQLYDF 68 (84)
T ss_dssp HHHHTCSSCCHHHHHHHHH--HSSCHHH---HHHS----CHHHHHHH--HSCHHHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHH--HcCCHHH---HHHC----CHHHHHHH--hCchHHHHHHHHH
Confidence 4588999999998888764 3444444 4432 24445566 78999 9999984
No 117
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=86.93 E-value=0.66 Score=46.03 Aligned_cols=59 Identities=19% Similarity=0.236 Sum_probs=43.1
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhcccCCCHHHHHHHHHhCCC
Q 010406 255 QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHR 317 (511)
Q Consensus 255 ~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~Gi~ 317 (511)
+|..+ |++..=++-|.++.+.| .++.+..-....+++.|++|+||||+||..+--.++.
T Consensus 174 ~Lr~~-G~~~rKa~~i~~~A~~g---~l~~l~~~~~~e~~~~L~~lpGIG~~TA~~ill~~lg 232 (295)
T 2jhn_A 174 GLREC-GLSRRKAELIVEIAKEE---NLEELKEWGEEEAYEYLTSFKGIGRWTAELVLSIALG 232 (295)
T ss_dssp HHHHT-TCCHHHHHHHHHHHTCS---SGGGGGGSCHHHHHHHHHTSTTCCHHHHHHHHHHTTC
T ss_pred HHHHc-CCCHHHHHHHHHHHHCC---CHhhhhcCCHHHHHHHHhcCCCcCHHHHHHHHHHccC
Confidence 45444 78888788888888775 4444443344558888999999999999998776554
No 118
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=86.82 E-value=0.32 Score=53.90 Aligned_cols=35 Identities=29% Similarity=0.500 Sum_probs=29.8
Q ss_pred hchhHHHHHHhcccCCCHHHHHHHHHhCCCCHHHHh
Q 010406 288 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 323 (511)
Q Consensus 288 ~~~~~~l~lf~~I~GvGpktA~~l~~~Gi~tledL~ 323 (511)
-.+...+.|+ +|||||+.+|++||+.|++|++||.
T Consensus 651 gv~~e~~~L~-qlp~i~~~rar~L~~~g~~s~~~l~ 685 (715)
T 2va8_A 651 GIKEELLELV-QISGVGRKRARLLYNNGIKELGDVV 685 (715)
T ss_dssp TCCGGGHHHH-TSTTCCHHHHHHHHHTTCCSHHHHH
T ss_pred CCChhhcchh-hCCCCCHHHHHHHHHcCCCCHHHHh
Confidence 3344456666 9999999999999999999999998
No 119
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=86.69 E-value=0.19 Score=55.88 Aligned_cols=49 Identities=24% Similarity=0.474 Sum_probs=34.8
Q ss_pred hHHHHHHhcccCCCHHHHHHHHHhCCCCHHHHhhcc--Ccchhhhhcccchh
Q 010406 291 VRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFD 340 (511)
Q Consensus 291 ~~~l~lf~~I~GvGpktA~~l~~~Gi~tledL~~~~--~L~~~q~~Glk~~~ 340 (511)
...+.|+ +|||||..+|+++|+.|++|+.||.+.. .+..+.++|-+-++
T Consensus 643 ~e~~~L~-qlp~v~~~rar~L~~~G~~s~~dl~~~~~~~l~~~~~~~~~i~~ 693 (720)
T 2zj8_A 643 EELIPLM-QLPLVGRRRARALYNSGFRSIEDISQARPEELLKIEGIGVKTVE 693 (720)
T ss_dssp GGGGGGT-TSTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHTSTTCCHHHHH
T ss_pred ccchhhh-hCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHhHhHHHHHHH
Confidence 3344455 9999999999999999999999998643 23333444444433
No 120
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=86.34 E-value=0.23 Score=50.53 Aligned_cols=29 Identities=38% Similarity=0.396 Sum_probs=26.1
Q ss_pred HhcccCCCHHHHHHHHHhCCCCHHHHhhc
Q 010406 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (511)
Q Consensus 297 f~~I~GvGpktA~~l~~~Gi~tledL~~~ 325 (511)
+..+||||++++++|.+.||+|+.||.+.
T Consensus 180 v~~l~GiG~~~~~~L~~~Gi~t~~dL~~~ 208 (352)
T 1jx4_A 180 IADVPGIGNITAEKLKKLGINKLVDTLSI 208 (352)
T ss_dssp GGGSTTCCHHHHHHHHTTTCCBGGGGGSS
T ss_pred CCcccccCHHHHHHHHHcCCchHHHHHCC
Confidence 46899999999999988899999999863
No 121
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=86.16 E-value=0.46 Score=48.76 Aligned_cols=51 Identities=22% Similarity=0.258 Sum_probs=24.6
Q ss_pred hHHHHHHhcccCCCHHHHHHHHHhCCCCHHHHhhcc--Ccchhhhhcccchhhh
Q 010406 291 VRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDI 342 (511)
Q Consensus 291 ~~~l~lf~~I~GvGpktA~~l~~~Gi~tledL~~~~--~L~~~q~~Glk~~~d~ 342 (511)
+...+++.+||+|||+.|++|.+. |-||+.|.++. .|....|+|-+....|
T Consensus 311 prGyRiLs~IPrl~~~iae~Lv~~-FGsLq~Il~AS~eEL~~VeGIGe~rAr~I 363 (377)
T 3c1y_A 311 ARGYRLLKTVARIPLSIGYNVVRM-FKTLDQISKASVEDLKKVEGIGEKRARAI 363 (377)
T ss_dssp CCSHHHHHHTSCCCHHHHHHHHHH-HCSHHHHTTCCHHHHTTSTTCCHHHHHHH
T ss_pred chHHHHHhhCCCCCHHHHHHHHHH-hCCHHHHHhCCHHHHHhccCccHHHHHHH
Confidence 334455555666666666665553 22444444332 2444445554444443
No 122
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=86.15 E-value=0.35 Score=51.79 Aligned_cols=29 Identities=28% Similarity=0.354 Sum_probs=26.3
Q ss_pred HhcccCCCHHHHHHHHHhCCCCHHHHhhc
Q 010406 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (511)
Q Consensus 297 f~~I~GvGpktA~~l~~~Gi~tledL~~~ 325 (511)
+..+||||++++++|.+.||+|+.||.+.
T Consensus 317 V~~l~GIG~~t~~kL~~lGI~TigDLa~~ 345 (504)
T 3gqc_A 317 VTNLPGVGHSMESKLASLGIKTCGDLQYM 345 (504)
T ss_dssp GGGSTTCCHHHHHHHHHTTCCBHHHHTTS
T ss_pred hhHhhCcCHHHHHHHHHcCCCcHHHHHhc
Confidence 35889999999999999999999999864
No 123
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=86.03 E-value=1.2 Score=46.25 Aligned_cols=58 Identities=17% Similarity=0.266 Sum_probs=41.1
Q ss_pred HHHHHhhhcCCCeEEEEccceeecCCc-cCCeeEEEecCCcchhhhHHHHHHHHHHHhc
Q 010406 357 LLQKAGEEVLPEVIILCGGSYRRGKAS-CGDLDVVIMHPDRKSHKGFLSKYVKKLKEMK 414 (511)
Q Consensus 357 iv~~~~~~~~p~~~v~~~Gs~RRgke~-~gDvDiLit~~~~~~~~~~l~~~v~~l~~~g 414 (511)
.|+.+.....|++.|.+.||++.|.-. .+|||++|..+.......++..+.+.|++.+
T Consensus 71 ~l~~~i~~~~p~~~v~~fGS~~~G~~~~~SDiDl~v~~~~~~~~~~~l~~l~~~L~~~~ 129 (405)
T 4e8f_A 71 TLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDSRVQSDTIALQFYEELIAEG 129 (405)
T ss_dssp HHHHHHHHHCTTCEEEEESHHHHTCCBSSCCEEEEEECCC---CTTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCCEEEEEeeccCCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHHhcC
Confidence 344444556899999999999999876 7899999987764333346667777776653
No 124
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=85.74 E-value=0.74 Score=35.76 Aligned_cols=52 Identities=19% Similarity=0.373 Sum_probs=39.3
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhcccCCCHHHHHHHHH
Q 010406 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (511)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~ 313 (511)
+++..|||||..++.++.| .| +.-+|.+-. ...+.|..|.|++..+|.++..
T Consensus 7 ~~l~~L~Gi~~~~~~kL~e---~G-i~TvedlA~----~~~~eL~~i~gise~kA~~ii~ 58 (70)
T 1wcn_A 7 DDLLNLEGVDRDLAFKLAA---RG-VCTLEDLAE----QGIDDLADIEGLTDEKAGALIM 58 (70)
T ss_dssp HHHHSSTTCCHHHHHHHHT---TT-CCSHHHHHT----SCHHHHHTSSSCCHHHHHHHHH
T ss_pred hHHHHcCCCCHHHHHHHHH---cC-CCcHHHHHc----CCHHHHHHccCCCHHHHHHHHH
Confidence 5689999999999887664 44 455666643 2455666899999999999975
No 125
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7
Probab=85.60 E-value=0.27 Score=46.80 Aligned_cols=28 Identities=36% Similarity=0.547 Sum_probs=23.3
Q ss_pred HhcccCCCHHHHHHHHHhCCCCHHHHhh
Q 010406 297 FGEVWGIGPATAQKLYEKGHRTLDDLKN 324 (511)
Q Consensus 297 f~~I~GvGpktA~~l~~~Gi~tledL~~ 324 (511)
+..+||||++++++|.+.||+|+.||.+
T Consensus 186 v~~l~giG~~~~~~L~~~Gi~TigdL~~ 213 (221)
T 1im4_A 186 IDEIPGIGSVLARRLNELGIQKLRDILS 213 (221)
T ss_dssp GGGSTTCCHHHHHHHHHTTCCBTTC---
T ss_pred cccccCCCHHHHHHHHHcCCCcHHHHHC
Confidence 4688999999999999999999999985
No 126
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=85.11 E-value=0.46 Score=44.86 Aligned_cols=49 Identities=20% Similarity=0.413 Sum_probs=35.6
Q ss_pred HHHHHhcccCCCHHHHHHHHHhCCCCHHHHhhcc--Ccchhhhhcccchhhh
Q 010406 293 TISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDI 342 (511)
Q Consensus 293 ~l~lf~~I~GvGpktA~~l~~~Gi~tledL~~~~--~L~~~q~~Glk~~~d~ 342 (511)
...+|+.|+|||+++|+.|.+. +.|+++|.++. .|....++|.+..+.+
T Consensus 160 ~~~~L~~i~gVg~~~a~~Ll~~-fgs~~~l~~a~~e~L~~v~GiG~~~a~~i 210 (219)
T 2bgw_A 160 QLYILQSFPGIGRRTAERILER-FGSLERFFTASKAEISKVEGIGEKRAEEI 210 (219)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHH-HSSHHHHTTCCHHHHHHSTTCCHHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHH-cCCHHHHHhCCHHHHhhCCCCCHHHHHHH
Confidence 3445679999999999999986 44588887543 4666677776655544
No 127
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=85.09 E-value=1.2 Score=42.54 Aligned_cols=60 Identities=22% Similarity=0.373 Sum_probs=37.9
Q ss_pred hhhcCCCCCCHHHHHHHHHHH---HhCCchhhHHHHhhchhHHHHHHhcccCCCHHHHHHHHHhC
Q 010406 254 DQVKGLPGIGKSMQDHIQEIV---TTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKG 315 (511)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil---~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~G 315 (511)
++|..+ |++..=|+.|.++. ..|.+ .++.+..-....+++.|++|+||||+||..+---+
T Consensus 96 e~Lr~~-G~~~~KA~~I~~~A~~i~~~~~-~~~~l~~~p~~~~~~~L~~lpGIG~kTA~~ill~a 158 (233)
T 2h56_A 96 EALRQA-GVSKRKIEYIRHVCEHVESGRL-DFTELEGAEATTVIEKLTAIKGIGQWTAEMFMMFS 158 (233)
T ss_dssp HHHHHT-TCCHHHHHHHHHHHHHHHTTSS-CHHHHTTSCHHHHHHHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHHHc-CCCHHHHHHHHHHHHHHHhCCC-CHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHh
Confidence 345443 67775455554444 34542 34444433445688889999999999999986643
No 128
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=84.92 E-value=1.6 Score=35.61 Aligned_cols=31 Identities=32% Similarity=0.362 Sum_probs=25.4
Q ss_pred cCCCeEEEEccceeecCCccC--CeeEEEecCC
Q 010406 365 VLPEVIILCGGSYRRGKASCG--DLDVVIMHPD 395 (511)
Q Consensus 365 ~~p~~~v~~~Gs~RRgke~~g--DvDiLit~~~ 395 (511)
..+...+.+-||+=||...-+ ||||+|..++
T Consensus 14 ~~~~~~v~LFGS~ArG~~~~~~SDiDllV~~~~ 46 (96)
T 1ylq_A 14 DVQDAEIYLYGSVVEGDYSIGLSDIDVAIVSDV 46 (96)
T ss_dssp HCTTCEEEEESHHHHCCSSSCCCSEEEEEECGG
T ss_pred HcCCcEEEEEEEEEeCCCCCCCCceEEEEEeCC
Confidence 355578999999999998765 9999997654
No 129
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=84.77 E-value=0.15 Score=55.42 Aligned_cols=49 Identities=29% Similarity=0.338 Sum_probs=40.8
Q ss_pred hcccCCCHHHHHHHHHhC-CCCHHHHhh--ccCcchhhhhcccchhhhccCc
Q 010406 298 GEVWGIGPATAQKLYEKG-HRTLDDLKN--EDSLTHSQRLGLKYFDDIKTRI 346 (511)
Q Consensus 298 ~~I~GvGpktA~~l~~~G-i~tledL~~--~~~L~~~q~~Glk~~~d~~~~i 346 (511)
++|.|+|++++++|++.| ++++.||.. ...|..+.+||-|..+.+...|
T Consensus 449 mdI~GlG~~~i~~L~~~g~i~~~~Dly~L~~~~L~~l~g~geKsa~nL~~aI 500 (586)
T 4glx_A 449 MDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVVNAL 500 (586)
T ss_dssp TCCTTCCHHHHHHHHHTTCCSSGGGGGTCCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred ccCCCcCHHHHHHHHhcCCCCCHHHHhCCCHHHHhcccCccHHHHHHHHHHH
Confidence 489999999999999997 599999974 3457778889988888876554
No 130
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=84.24 E-value=0.27 Score=49.98 Aligned_cols=29 Identities=34% Similarity=0.542 Sum_probs=26.1
Q ss_pred HhcccCCCHHHHHHHHHhCCCCHHHHhhc
Q 010406 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (511)
Q Consensus 297 f~~I~GvGpktA~~l~~~Gi~tledL~~~ 325 (511)
+..+||||++++++|.+.||+|+.||.+.
T Consensus 181 v~~l~GiG~~~~~~L~~~Gi~t~~dL~~~ 209 (354)
T 3bq0_A 181 IDEIPGIGSVLARRLNELGIQKLRDILSK 209 (354)
T ss_dssp STTSTTCCHHHHHHHTTTTCCBGGGGGGS
T ss_pred cccccCcCHHHHHHHHHcCCccHHHHhcC
Confidence 36889999999999988899999999864
No 131
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=83.87 E-value=0.57 Score=49.08 Aligned_cols=29 Identities=24% Similarity=0.510 Sum_probs=26.7
Q ss_pred HhcccCCCHHHHHHHHH--hCCCCHHHHhhc
Q 010406 297 FGEVWGIGPATAQKLYE--KGHRTLDDLKNE 325 (511)
Q Consensus 297 f~~I~GvGpktA~~l~~--~Gi~tledL~~~ 325 (511)
+..+||||++++++|.+ .||+|+.||.+.
T Consensus 243 v~~l~GiG~~~~~~L~~~~~GI~ti~dL~~~ 273 (434)
T 2aq4_A 243 LDDLPGVGHSTLSRLESTFDSPHSLNDLRKR 273 (434)
T ss_dssp GGGSTTCCHHHHHHHHHHTTCCCSHHHHHHH
T ss_pred cccccCcCHHHHHHHHHhcCCceEHHHHHhc
Confidence 46899999999999999 899999999875
No 132
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=82.62 E-value=4.2 Score=34.04 Aligned_cols=63 Identities=24% Similarity=0.381 Sum_probs=37.4
Q ss_pred cCHHHHHHHHHHHHHHhhhcCCCeEEEEccceeecCC-ccCCeeEEEecCCcchhhhHHHHHHHHHHHh
Q 010406 346 IPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA-SCGDLDVVIMHPDRKSHKGFLSKYVKKLKEM 413 (511)
Q Consensus 346 i~r~ea~~~~~iv~~~~~~~~p~~~v~~~Gs~RRgke-~~gDvDiLit~~~~~~~~~~l~~~v~~l~~~ 413 (511)
++..+.+.+..++++ ..+...+.+-||+=||.. ..+||||+|-.+++.... .+.++...|.+.
T Consensus 9 l~~~~~~~i~~~l~~----~~~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~~~~~~-~~~~l~~~l~~~ 72 (114)
T 1no5_A 9 IKSEELAIVKTILQQ----LVPDYTVWAFGSRVKGKAKKYSDLDLAIISEEPLDFL-ARDRLKEAFSES 72 (114)
T ss_dssp SCHHHHHHHHHHHHH----HCTTSEEEEEGGGTTTCCCTTCCEEEEEECSSCCCHH-HHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHH----hCCCCEEEEEeccCCCCCCCCCCeEEEEEeCCCCCHH-HHHHHHHHHHhc
Confidence 344445555555544 234458999999999974 458999999766543221 123444545443
No 133
>4gns_A Chitin biosynthesis protein CHS5; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=82.04 E-value=1.3 Score=40.28 Aligned_cols=89 Identities=21% Similarity=0.274 Sum_probs=58.6
Q ss_pred CCCeEEEEecCCC--cchHHHHHHHHHHhcCCEEEeec-CCCccEEEEcCChH---HHHHHHHHhhhccCCcccccchHH
Q 010406 19 FAGMRVFLVEKGV--QNRRLQIWRQKLVQMGATVEEKL-SKKVTHVLAMDLEA---LLQQVSKQHLARFKGSVIRYQWLE 92 (511)
Q Consensus 19 F~g~~iy~~~~~~--g~~r~~~l~~~~~~~Gg~v~~~~-s~~VTHVV~~~~s~---~~~~l~~~~~~~~~~~iV~~~Wl~ 92 (511)
++|+++.+-+-.. .-+.+++ .+-+...|++-...- .-+.||.|+.+.+. ....++++. ....||.++|+-
T Consensus 162 msgitvclgpldplkeisdlqi-sqclshigarplqrhvaidtthfvcndldneesneelirakh---nnipivrpewvr 237 (290)
T 4gns_A 162 MSGITVCLGPLDPLKEISDLQI-SQCLSHIGARPLQRHVAIDTTHFVCNDLDNEESNEELIRAKH---NNIPIVRPEWVR 237 (290)
T ss_dssp CTTCCEEECCCCGGGTCCHHHH-HHHHHHTTCCCCBSSCCTTCCEEECSCCTTCTTCHHHHHHHH---TTCCEECTHHHH
T ss_pred ccCceEEecCCChhhhhhhccH-HHHHHHhCCchhhheeeeecceeeecCCCcccchHHHHhhhc---cCCCccCHHHHH
Confidence 3556665543321 1234554 466677788766543 44789999965432 233344333 267899999999
Q ss_pred HHHhcCCCCCccccccccC
Q 010406 93 DSLRLGEKVSEDLYRIKLD 111 (511)
Q Consensus 93 ecik~g~lvde~~y~l~~~ 111 (511)
.|--+++.|-...|.+..+
T Consensus 238 acevekrivgvrgfyldad 256 (290)
T 4gns_A 238 ACEVEKRIVGVRGFYLDAD 256 (290)
T ss_dssp HHHHTTSCCCSGGGBTTSC
T ss_pred HHhhhheeeeeeeEEEccc
Confidence 9999999999999988644
No 134
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=81.97 E-value=0.27 Score=47.02 Aligned_cols=48 Identities=15% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHhcccCCCHHHHHHHHHhCCCCHHHHhhcc--Ccchhhhhcccchhhhcc
Q 010406 295 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDIKT 344 (511)
Q Consensus 295 ~lf~~I~GvGpktA~~l~~~Gi~tledL~~~~--~L~~~q~~Glk~~~d~~~ 344 (511)
..|..|+|||+++|++|.+. +.|++.|.++. .|... ++|.+..+.|..
T Consensus 173 s~L~~IpGIG~k~ak~Ll~~-FGSl~~i~~As~eeL~~V-GIG~~~A~~I~~ 222 (226)
T 3c65_A 173 SVLDDIPGVGEKRKKALLNY-FGSVKKMKEATVEELQRA-NIPRAVAEKIYE 222 (226)
T ss_dssp ----------------------------------------------------
T ss_pred ccccccCCCCHHHHHHHHHH-hCCHHHHHhCCHHHHHHc-CCCHHHHHHHHH
Confidence 45679999999999999885 66788887543 47777 888777666543
No 135
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=81.63 E-value=1.1 Score=36.92 Aligned_cols=56 Identities=16% Similarity=0.222 Sum_probs=38.1
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhcccCCCHHHHHHHHH
Q 010406 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (511)
Q Consensus 252 s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~ 313 (511)
|+.+|++||+||+++++...++ -+..+++|+..-+..+..-+... |..|-. ..||.
T Consensus 2 ~~~~L~~LPNiG~~~e~~L~~v----GI~s~e~L~~~Ga~~ay~rL~~~-~~~~c~-~~L~a 57 (93)
T 3bqs_A 2 SLANLSELPNIGKVLEQDLIKA----GIKTPVELKDVGSKEAFLRIWEN-DSSVCM-SELYA 57 (93)
T ss_dssp CCSCGGGSTTCCHHHHHHHHHT----TCCSHHHHHHHHHHHHHHHHHTT-CTTCCH-HHHHH
T ss_pred ChHHhhcCCCCCHHHHHHHHHc----CCCCHHHHHhCCHHHHHHHHHHH-CCCCCH-HHHHH
Confidence 5778999999999998876654 45667777765555555555444 555544 55554
No 136
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=81.10 E-value=0.81 Score=43.13 Aligned_cols=21 Identities=43% Similarity=0.631 Sum_probs=18.7
Q ss_pred HHHHHHhcccCCCHHHHHHHH
Q 010406 292 RTISLFGEVWGIGPATAQKLY 312 (511)
Q Consensus 292 ~~l~lf~~I~GvGpktA~~l~ 312 (511)
..++.|.++||||||+|+++-
T Consensus 23 ~LI~~l~~LPGIG~KsA~RlA 43 (212)
T 3vdp_A 23 KLIEELSKLPGIGPKTAQRLA 43 (212)
T ss_dssp HHHHHHHTSTTCCHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHH
Confidence 478899999999999999983
No 137
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=81.01 E-value=0.32 Score=49.71 Aligned_cols=28 Identities=36% Similarity=0.550 Sum_probs=25.7
Q ss_pred hcccCCCHHHHHHHHHhCCCCHHHHhhc
Q 010406 298 GEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (511)
Q Consensus 298 ~~I~GvGpktA~~l~~~Gi~tledL~~~ 325 (511)
..+||||++++++|.+.||+|+.||.+.
T Consensus 182 ~~l~GiG~~~~~~L~~~GI~Ti~dL~~~ 209 (362)
T 4f4y_A 182 DEIPGIGSVLARRLNELGIQKLRDILSK 209 (362)
T ss_dssp TTSTTCCSTTHHHHHHTTCCBGGGGTTS
T ss_pred hhccCCCHHHHHHHHHcCCChHHHHhcC
Confidence 5789999999999999999999999853
No 138
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=80.84 E-value=0.87 Score=43.35 Aligned_cols=49 Identities=24% Similarity=0.498 Sum_probs=35.9
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhcccCCCH-HHHHHHHH
Q 010406 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGP-ATAQKLYE 313 (511)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGp-ktA~~l~~ 313 (511)
..|.+|||||++.+.++.... |++ +.+.+.. .+.|.+| ||+ ++|+.+|+
T Consensus 168 s~LdgIpGIG~k~ak~Ll~~F--gSl---~~i~~As----~EeL~~V--IG~~~~A~~I~~ 217 (220)
T 2nrt_A 168 SVLDNVPGIGPIRKKKLIEHF--GSL---ENIRSAS----LEEIARV--IGSTEIARRVLD 217 (220)
T ss_dssp HHHTTSTTCCHHHHHHHHHHH--CSH---HHHHTSC----HHHHHHH--HTCHHHHHHHHH
T ss_pred ccccCCCCcCHHHHHHHHHHc--CCH---HHHHhCC----HHHHHHH--hChHHHHHHHHH
Confidence 458999999999999987743 444 4444322 3455677 999 99999986
No 139
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=80.68 E-value=2.6 Score=42.33 Aligned_cols=58 Identities=17% Similarity=0.266 Sum_probs=40.5
Q ss_pred HHHHHhhhcCCCeEEEEccceeecCCc-cCCeeEEEecCCcchhhhHHHHHHHHHHHhc
Q 010406 357 LLQKAGEEVLPEVIILCGGSYRRGKAS-CGDLDVVIMHPDRKSHKGFLSKYVKKLKEMK 414 (511)
Q Consensus 357 iv~~~~~~~~p~~~v~~~Gs~RRgke~-~gDvDiLit~~~~~~~~~~l~~~v~~l~~~g 414 (511)
.|+.+.....|+++|.+-|||+-|--. .+|||+.|..+.......++..+...+...+
T Consensus 43 ~l~~~i~~~~p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~~~~~~~~~~~~~~~~~~~ 101 (349)
T 4fh3_A 43 TLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDSRVQSDTIALQFYEELIAEG 101 (349)
T ss_dssp HHHHHHHTTCTTCEEEEESHHHHTCCBSSCCEEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCCEEEEEeeccCCCCCCCCCEEEEEecCCCCChHHHHHHHHHHHHhhc
Confidence 344445557899999999999998754 4699999987765544445555555555544
No 140
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=79.79 E-value=1.1 Score=49.60 Aligned_cols=40 Identities=28% Similarity=0.464 Sum_probs=32.7
Q ss_pred HHhhchhHHHHHHhcccCCCHHHHHHHHHhCCCCHHHHhhc
Q 010406 285 FEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (511)
Q Consensus 285 l~~~~~~~~l~lf~~I~GvGpktA~~l~~~Gi~tledL~~~ 325 (511)
+....+...+.|+ +|||||..+|+++|+.|++|+.||.+.
T Consensus 623 i~~gv~~~~~~L~-qlp~v~~~~ar~l~~~g~~s~~~l~~~ 662 (702)
T 2p6r_A 623 IKHGVKEELLELV-RIRHIGRVRARKLYNAGIRNAEDIVRH 662 (702)
T ss_dssp HHHTCCGGGHHHH-TSTTCCHHHHHHHHTTTCCSHHHHHHT
T ss_pred HHcCCCcchHhhh-cCCCCCHHHHHHHHHcCCCCHHHHHhh
Confidence 3444455566666 999999999999999999999999854
No 141
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=79.75 E-value=1.3 Score=42.06 Aligned_cols=31 Identities=32% Similarity=0.584 Sum_probs=25.2
Q ss_pred HHHHhcccCCCHHHHHHHHHhCCCCHHHHhhc
Q 010406 294 ISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (511)
Q Consensus 294 l~lf~~I~GvGpktA~~l~~~Gi~tledL~~~ 325 (511)
-..|..|+|||+++|++|.+. +.|++.|.++
T Consensus 167 ~s~LdgIpGIG~k~ak~Ll~~-FgSl~~i~~A 197 (220)
T 2nrt_A 167 RSVLDNVPGIGPIRKKKLIEH-FGSLENIRSA 197 (220)
T ss_dssp HHHHTTSTTCCHHHHHHHHHH-HCSHHHHHTS
T ss_pred cccccCCCCcCHHHHHHHHHH-cCCHHHHHhC
Confidence 345679999999999999996 3389988765
No 142
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=79.64 E-value=3.9 Score=40.86 Aligned_cols=28 Identities=14% Similarity=0.081 Sum_probs=25.9
Q ss_pred HhcccCCCHHHHHHHHHhCCCCHHHHhh
Q 010406 297 FGEVWGIGPATAQKLYEKGHRTLDDLKN 324 (511)
Q Consensus 297 f~~I~GvGpktA~~l~~~Gi~tledL~~ 324 (511)
|.++||||+..++++++.|++|++||..
T Consensus 159 L~Qlp~i~~~~~~~l~~~~i~s~~~l~~ 186 (328)
T 3im1_A 159 LRQIPHFNNKILEKCKEINVETVYDIMA 186 (328)
T ss_dssp GGGSTTCCHHHHHHHHHTTCCSHHHHHH
T ss_pred eeCCCCCCHHHHHHHHhCCCCCHHHHhc
Confidence 4599999999999999999999999985
No 143
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=79.11 E-value=1 Score=42.84 Aligned_cols=22 Identities=41% Similarity=0.576 Sum_probs=19.4
Q ss_pred hHHHHHHhcccCCCHHHHHHHH
Q 010406 291 VRTISLFGEVWGIGPATAQKLY 312 (511)
Q Consensus 291 ~~~l~lf~~I~GvGpktA~~l~ 312 (511)
...++.|.++||||||+|+++-
T Consensus 8 ~~LI~~l~~LPGIG~KSA~RlA 29 (228)
T 1vdd_A 8 VSLIRELSRLPGIGPKSAQRLA 29 (228)
T ss_dssp HHHHHHHHTSTTCCHHHHHHHH
T ss_pred HHHHHHHhHCCCCCHHHHHHHH
Confidence 3478899999999999999984
No 144
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=79.07 E-value=1 Score=44.73 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=22.0
Q ss_pred cccCCCHHHHHHHHHhCCCCHHHHhhc
Q 010406 299 EVWGIGPATAQKLYEKGHRTLDDLKNE 325 (511)
Q Consensus 299 ~I~GvGpktA~~l~~~Gi~tledL~~~ 325 (511)
+|+|||||||.+|.++ +.|||.|...
T Consensus 207 GVpGIG~KTA~kLL~~-~gsle~i~~~ 232 (290)
T 1exn_A 207 GVEGIGAKRGYNIIRE-FGNVLDIIDQ 232 (290)
T ss_dssp CCTTCCHHHHHHHHHH-HCSHHHHHHH
T ss_pred CCCcCCHhHHHHHHHH-cCCHHHHHHH
Confidence 4999999999999997 3489998754
No 145
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=78.15 E-value=1.3 Score=41.87 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=19.0
Q ss_pred HHHHHHhcccCCCHHHHHHHHHh
Q 010406 292 RTISLFGEVWGIGPATAQKLYEK 314 (511)
Q Consensus 292 ~~l~lf~~I~GvGpktA~~l~~~ 314 (511)
.+++.|++++||||+||..+--.
T Consensus 112 ~~~~~L~~lpGIG~~TA~~il~~ 134 (221)
T 1kea_A 112 RNRKAILDLPGVGKYTCAAVMCL 134 (221)
T ss_dssp SCHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcHHHHHHHHHH
Confidence 35667779999999999998765
No 146
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=77.68 E-value=2 Score=40.57 Aligned_cols=93 Identities=18% Similarity=0.213 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhCCchhhHHHHh-hchhHHHHHHh-cccCCCHHHHHHHHHh-CCCCHH--HHhhccCcchhhhhcccchh
Q 010406 266 MQDHIQEIVTTGKLSKLEHFEK-DEKVRTISLFG-EVWGIGPATAQKLYEK-GHRTLD--DLKNEDSLTHSQRLGLKYFD 340 (511)
Q Consensus 266 ia~kI~Eil~tG~~~~le~l~~-~~~~~~l~lf~-~I~GvGpktA~~l~~~-Gi~tle--dL~~~~~L~~~q~~Glk~~~ 340 (511)
=|..|.++.+-| .-++.+.. .....+.+.|+ ++||||||||.-+-.. |...+. |.- -.+-++++|+-.
T Consensus 96 KA~~I~~~a~~~--~l~~~~~~~~~~~~~re~Ll~~LpGVG~KTA~~vL~~~g~~~~~vVDth---v~Ri~~RlG~~~-- 168 (214)
T 3fhf_A 96 RAEYIVLARRFK--NIKDIVESFENEKVAREFLVRNIKGIGYKEASHFLRNVGYDDVAIIDRH---ILRELYENNYID-- 168 (214)
T ss_dssp HHHHHHHHGGGC--CHHHHHHHSSSHHHHHHHHHHHSTTCCHHHHHHHHHHTTCCSCCCCCHH---HHHHHHHTTSSS--
T ss_pred HHHHHHHHHHhh--HHHHHhcccCCcHHHHHHHHHhCCCCCHHHHHHHHHHcCCCCcccCcHH---HHHHHHHcCCCC--
Confidence 355555554422 12344433 24456888898 9999999999986543 553221 111 122244556532
Q ss_pred hhccCcCHHHHHHHHHHHHHHhhhc
Q 010406 341 DIKTRIPRHEVEQMERLLQKAGEEV 365 (511)
Q Consensus 341 d~~~~i~r~ea~~~~~iv~~~~~~~ 365 (511)
...+.+|...-.+++..+...++.+
T Consensus 169 ~~~k~lt~~~y~e~~~~l~~~g~~~ 193 (214)
T 3fhf_A 169 EIPKTLSRRKYLEIENILRDIGEEV 193 (214)
T ss_dssp SCCSSCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 1225667666666766666655443
No 147
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=76.75 E-value=1.3 Score=44.93 Aligned_cols=25 Identities=28% Similarity=0.613 Sum_probs=22.0
Q ss_pred cccCCCHHHHHHHHHh-CCCCHHHHhhc
Q 010406 299 EVWGIGPATAQKLYEK-GHRTLDDLKNE 325 (511)
Q Consensus 299 ~I~GvGpktA~~l~~~-Gi~tledL~~~ 325 (511)
+|||||||||.+|.++ | ||+.+...
T Consensus 236 gipGiG~KtA~kll~~~g--sle~i~~~ 261 (341)
T 3q8k_A 236 SIRGIGPKRAVDLIQKHK--SIEEIVRR 261 (341)
T ss_dssp CCTTCCHHHHHHHHHHHC--SHHHHHHH
T ss_pred CCCCccHHHHHHHHHHcC--CHHHHHHH
Confidence 6999999999999998 5 89988754
No 148
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=76.67 E-value=1.4 Score=47.19 Aligned_cols=28 Identities=32% Similarity=0.351 Sum_probs=25.6
Q ss_pred hcccCCCHHHHHHHHHhCCCCHHHHhhc
Q 010406 298 GEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (511)
Q Consensus 298 ~~I~GvGpktA~~l~~~Gi~tledL~~~ 325 (511)
..|||||++++++|-..||+|+.||...
T Consensus 341 ~kl~GIG~~t~~~L~~lGI~TigDL~~~ 368 (517)
T 3pzp_A 341 RKVSGIGKVTEKMLKALGIITCTELYQQ 368 (517)
T ss_dssp GGSTTCCHHHHHHHHHTTCCBHHHHHHH
T ss_pred hhhccccHHHHHHHHHhCCCcHHHHHhh
Confidence 5799999999999999999999999863
No 149
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=76.58 E-value=1.5 Score=41.60 Aligned_cols=22 Identities=23% Similarity=0.293 Sum_probs=18.5
Q ss_pred HHHHHhcccCCCHHHHHHHHHh
Q 010406 293 TISLFGEVWGIGPATAQKLYEK 314 (511)
Q Consensus 293 ~l~lf~~I~GvGpktA~~l~~~ 314 (511)
+++.|++++||||+||..+--.
T Consensus 107 ~~~~L~~lpGIG~~TA~~il~~ 128 (225)
T 1kg2_A 107 TFEEVAALPGVGRSTAGAILSL 128 (225)
T ss_dssp SHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHhcCCCCcHHHHHHHHHH
Confidence 5677789999999999987654
No 150
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=75.22 E-value=5.9 Score=39.13 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=17.1
Q ss_pred HHHHHhc-ccCCCHHHHHHHHHh
Q 010406 293 TISLFGE-VWGIGPATAQKLYEK 314 (511)
Q Consensus 293 ~l~lf~~-I~GvGpktA~~l~~~ 314 (511)
.++.|++ ++|||++||..+---
T Consensus 126 ~~~~Ll~~LpGIG~kTA~~iL~~ 148 (287)
T 3n5n_X 126 TAETLQQLLPGVGRYTAGAIASI 148 (287)
T ss_dssp SHHHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHH
Confidence 3555667 999999999987654
No 151
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=74.86 E-value=2.5 Score=39.67 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=19.0
Q ss_pred HHHHHHhcccCCCHHHHHHHHHh
Q 010406 292 RTISLFGEVWGIGPATAQKLYEK 314 (511)
Q Consensus 292 ~~l~lf~~I~GvGpktA~~l~~~ 314 (511)
.+++.|++++||||+||..+--.
T Consensus 106 ~~~~~L~~l~GIG~~tA~~il~~ 128 (211)
T 2abk_A 106 EDRAALEALPGVGRKTANVVLNT 128 (211)
T ss_dssp SCHHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCChHHHHHHHHH
Confidence 35677789999999999988654
No 152
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=74.57 E-value=2.2 Score=49.38 Aligned_cols=47 Identities=11% Similarity=0.017 Sum_probs=37.9
Q ss_pred hhhcCCCCCCHHHHHHHHHHH-H-hCCchhhHHHHhhchhHHHHHHhcccCCCHHHHHHHH
Q 010406 254 DQVKGLPGIGKSMQDHIQEIV-T-TGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY 312 (511)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil-~-tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~ 312 (511)
..|.-|+|||+..|+.|.++. + .|.+...++|. +|+|+|||+-.+.-
T Consensus 717 ~lL~~v~GlGp~kA~~Iv~~r~~~~G~f~sr~~L~------------~v~~iG~k~fe~~a 765 (1030)
T 3psf_A 717 SALKYISGFGKRKAIDFLQSLQRLNEPLLARQQLI------------THNILHKTIFMNSA 765 (1030)
T ss_dssp TTGGGSTTCCHHHHHHHHHHHHHTCSCCCCTTHHH------------HTTSSCHHHHHHHT
T ss_pred HHHhhCCCCCHHHHHHHHHHHHHhCCCCCCHHHHH------------hcCCccHHHHHhcc
Confidence 468899999999999999998 4 68877666543 68999998876653
No 153
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=74.30 E-value=3.6 Score=42.00 Aligned_cols=53 Identities=15% Similarity=0.216 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHH---HhCC--chhhHHHHhhchhHHHHHHhcccCCCHHHHHHHHHh
Q 010406 261 GIGKSMQDHIQEIV---TTGK--LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK 314 (511)
Q Consensus 261 gIG~~ia~kI~Eil---~tG~--~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~ 314 (511)
|+|.+ ++-|.++. ..|. --.++.+..-....+++.|++|+||||+||..+--.
T Consensus 215 Gl~~R-A~~I~~~A~~i~~~~~G~~~L~~l~~~~~~~~~~~L~~LpGIGp~TA~~ill~ 272 (360)
T 2xhi_A 215 GLGYR-ARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGTCVADKICLM 272 (360)
T ss_dssp TCTTH-HHHHHHHHHHHHHTTCTHHHHHGGGTSCHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred CCcHH-HHHHHHHHHHHHhccCCccCHHHHhcCCHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 55654 55555443 3332 123566654445568999999999999999988654
No 154
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=74.25 E-value=1.8 Score=45.49 Aligned_cols=29 Identities=31% Similarity=0.351 Sum_probs=25.8
Q ss_pred HhcccCCCHHHHHHHHHhCCCCHHHHhhc
Q 010406 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (511)
Q Consensus 297 f~~I~GvGpktA~~l~~~Gi~tledL~~~ 325 (511)
+..|||||++++++|-..||+|+.||...
T Consensus 284 v~~l~GiG~~~~~~L~~lGI~T~gdL~~~ 312 (459)
T 1t94_A 284 IRKVSGIGKVTEKMLKALGIITCTELYQQ 312 (459)
T ss_dssp GGGCTTSCHHHHHHHHHTTCCBHHHHHHT
T ss_pred HHhcCCcCHHHHHHHHHcCCCcHHHHHhh
Confidence 35899999999999988899999999863
No 155
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=74.04 E-value=5.1 Score=32.63 Aligned_cols=48 Identities=21% Similarity=0.205 Sum_probs=31.9
Q ss_pred cCHHHHH-HHHHHHHHHhhhcCCCeEEEEccceeecCCc-cCCeeEEEecCC
Q 010406 346 IPRHEVE-QMERLLQKAGEEVLPEVIILCGGSYRRGKAS-CGDLDVVIMHPD 395 (511)
Q Consensus 346 i~r~ea~-~~~~iv~~~~~~~~p~~~v~~~Gs~RRgke~-~gDvDiLit~~~ 395 (511)
|.+ ++. .+.+.+..++... +-..+.+-|||=||..+ .+||||+|..++
T Consensus 4 m~~-~~l~~l~~~i~~l~~~~-~v~~v~LFGS~arG~~~~~SDiDl~V~~~~ 53 (98)
T 1wot_A 4 MDL-ETLRARREAVLSLCARH-GAVRVRVFGSVARGEAREDSDLDLLVAFEE 53 (98)
T ss_dssp CCH-HHHHHHHHHHHHHHHHH-TCSSCEECSHHHHTCCCTTCCCEEEECCCS
T ss_pred CCH-HHHHHHHHHHHHHHHHc-CCcEEEEEccccCCCCCCCCCEEEEEEeCC
Confidence 444 433 3566666665443 32368899999999864 589999995544
No 156
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}
Probab=73.35 E-value=4.8 Score=33.78 Aligned_cols=41 Identities=17% Similarity=0.418 Sum_probs=30.2
Q ss_pred HHHHHHHHhhhcCCCe-EEEEccceeecCC-ccCCeeEEEecCC
Q 010406 354 MERLLQKAGEEVLPEV-IILCGGSYRRGKA-SCGDLDVVIMHPD 395 (511)
Q Consensus 354 ~~~iv~~~~~~~~p~~-~v~~~Gs~RRgke-~~gDvDiLit~~~ 395 (511)
+.+++..++.. .|++ .+.+-||+=||.. ..+||||+|..++
T Consensus 19 l~~~~~~l~~~-~~~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~ 61 (111)
T 2rff_A 19 AKEIVEEVASS-FPNLEEVYIFGSRARGDYLDTSDIDILFVFKG 61 (111)
T ss_dssp HHHHHHHHHHH-CTTEEEEEEESHHHHSCCCTTCCEEEEEEESS
T ss_pred HHHHHHHHHHH-cCCccEEEEEeeeecCCCCCCCCEEEEEEecC
Confidence 46666666543 4676 6889999999985 3589999996554
No 157
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=73.27 E-value=5.1 Score=40.26 Aligned_cols=28 Identities=11% Similarity=0.177 Sum_probs=26.0
Q ss_pred HhcccCCCHHHHHHHHHhCCCCHHHHhh
Q 010406 297 FGEVWGIGPATAQKLYEKGHRTLDDLKN 324 (511)
Q Consensus 297 f~~I~GvGpktA~~l~~~Gi~tledL~~ 324 (511)
|.++||||+..++++++.|++|++||..
T Consensus 163 L~Qlp~i~~~~~~~l~~~~i~s~~~l~~ 190 (339)
T 2q0z_X 163 LKQLPHFTSEHIKRCTDKGVESVFDIME 190 (339)
T ss_dssp GGGSTTCCHHHHHHHHHTTCCSHHHHHH
T ss_pred eecCCCCCHHHHHHHHhcCCCCHHHHHh
Confidence 4599999999999999999999999985
No 158
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=72.46 E-value=0.75 Score=50.23 Aligned_cols=65 Identities=11% Similarity=0.059 Sum_probs=0.0
Q ss_pred HHhcccCCCHHHHHHHHHhC-CCCHHHHhh--ccCcchhhhh------cccchhhhccCcCHHHHHHHHHHHHHH
Q 010406 296 LFGEVWGIGPATAQKLYEKG-HRTLDDLKN--EDSLTHSQRL------GLKYFDDIKTRIPRHEVEQMERLLQKA 361 (511)
Q Consensus 296 lf~~I~GvGpktA~~l~~~G-i~tledL~~--~~~L~~~q~~------Glk~~~d~~~~i~r~ea~~~~~iv~~~ 361 (511)
.| +|-|+|++++++|++.| |+++.||.. ...|..+.+| |-|..+.|...|-..--..+..++-.+
T Consensus 459 am-dI~GlG~~~i~~L~~~g~i~~~aDly~L~~~~L~~l~~~~~~~g~g~ksa~nLl~aIe~sk~~~l~r~L~aL 532 (615)
T 3sgi_A 459 GL-DIEVLGYEAGVALLQAKVIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVNLDKAKAAPLWRVLVAL 532 (615)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cc-CccccCHHHHHHHHHCCCcCCHHHHhhCCHHHHhhccccccccCccchHHHHHHHHHHHhcCCCHHHHHHHc
Confidence 44 99999999999999997 799999874 3346666655 578888887766554444455555544
No 159
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=72.37 E-value=1.2 Score=46.63 Aligned_cols=28 Identities=11% Similarity=0.160 Sum_probs=24.0
Q ss_pred hcccCCCHHHHHH-HHHhCCCCHHHHhhc
Q 010406 298 GEVWGIGPATAQK-LYEKGHRTLDDLKNE 325 (511)
Q Consensus 298 ~~I~GvGpktA~~-l~~~Gi~tledL~~~ 325 (511)
..|||||++++++ |...||+|+.||.+.
T Consensus 256 ~~l~GiG~~~~~~lL~~lGI~TigdLa~~ 284 (435)
T 4ecq_A 256 RKIRSLGGKLGASVIEILGIEYMGELTQF 284 (435)
T ss_dssp GGSTTCSSHHHHHHHHHHTCCBGGGGGGS
T ss_pred HHhcCCCHHHHHHHHHHcCCCcHHHHhhC
Confidence 5889999999887 566799999999864
No 160
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=71.92 E-value=2.2 Score=43.38 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=23.7
Q ss_pred hcccCCCHHHHHHHHHh-CCCCHHHHhh
Q 010406 298 GEVWGIGPATAQKLYEK-GHRTLDDLKN 324 (511)
Q Consensus 298 ~~I~GvGpktA~~l~~~-Gi~tledL~~ 324 (511)
-+|+|||||||.+|.++ |-.||+.+.+
T Consensus 228 pgv~GiG~ktA~kli~~~~~~~l~~il~ 255 (352)
T 3qe9_Y 228 SSLRGIGLAKACKVLRLANNPDIVKVIK 255 (352)
T ss_dssp CCCTTCCHHHHHHHHHHCCCSCHHHHHT
T ss_pred CCCCCeeHHHHHHHHHHhCCCCHHHHHH
Confidence 48999999999999998 6678988875
No 161
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=70.39 E-value=3.1 Score=39.53 Aligned_cols=22 Identities=18% Similarity=0.152 Sum_probs=18.8
Q ss_pred HHHHHhcccCCCHHHHHHHHHh
Q 010406 293 TISLFGEVWGIGPATAQKLYEK 314 (511)
Q Consensus 293 ~l~lf~~I~GvGpktA~~l~~~ 314 (511)
+++.|++++||||+||..+--.
T Consensus 111 ~~~~L~~lpGIG~~TA~~il~~ 132 (226)
T 1orn_A 111 DRDELMKLPGVGRKTANVVVSV 132 (226)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHCCCccHHHHHHHHHH
Confidence 5777889999999999988754
No 162
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=69.90 E-value=6 Score=37.40 Aligned_cols=66 Identities=20% Similarity=0.227 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHh-cCCcccc-chhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhcccCCC
Q 010406 232 RSFSYYKAIPVIE-KLPFKIE-SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIG 304 (511)
Q Consensus 232 r~~aY~rAa~~l~-~l~~~i~-s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvG 304 (511)
|+..-.++|..|. .+...+. ..++|..|||||+.+|+.|.-+. -|.-. + -....+...+.+++|+.
T Consensus 85 kA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~TA~~il~~a-~~~~~----~--~vD~~v~Rv~~rl~~~~ 152 (225)
T 1kg2_A 85 RARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLS-LGKHF----P--ILDGNVKRVLARCYAVS 152 (225)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCCSHHHHHTSTTCCHHHHHHHHHHH-HCCSC----C--CCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHhCCCchHHHHHHhcCCCCcHHHHHHHHHHh-CCCCc----c--eeCHHHHHHHHHHcCCC
Confidence 6666667776654 3333332 46889999999999999997664 33321 1 12344666666666654
No 163
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=69.82 E-value=2.2 Score=40.34 Aligned_cols=25 Identities=20% Similarity=0.146 Sum_probs=20.4
Q ss_pred HHHHHHhcccCCCHHHHHHHHHhCC
Q 010406 292 RTISLFGEVWGIGPATAQKLYEKGH 316 (511)
Q Consensus 292 ~~l~lf~~I~GvGpktA~~l~~~Gi 316 (511)
.+++.|+++|||||+||..+--.++
T Consensus 118 ~~~~~L~~lpGIG~kTA~~il~~a~ 142 (218)
T 1pu6_A 118 VTREWLLDQKGIGKESADAILCYAC 142 (218)
T ss_dssp CCHHHHHTSTTCCHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHHC
Confidence 4677778999999999999877533
No 164
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=69.78 E-value=3.2 Score=48.83 Aligned_cols=46 Identities=11% Similarity=0.033 Sum_probs=36.3
Q ss_pred hhhcCCCCCCHHHHHHHHHHH-H-hCCchhhHHHHhhchhHHHHHHhcccCCCHHHHHHH
Q 010406 254 DQVKGLPGIGKSMQDHIQEIV-T-TGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 311 (511)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil-~-tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l 311 (511)
..|.-|+|||+..|+.|.++. + .|.+...++|. +|+|+|||+-.+.
T Consensus 714 ~lL~~v~GlGp~kA~~Iv~~r~~~~G~f~sr~~L~------------~v~~iG~k~fe~~ 761 (1219)
T 3psi_A 714 SALKYISGFGKRKAIDFLQSLQRLNEPLLARQQLI------------THNILHKTIFMNS 761 (1219)
T ss_dssp TTGGGSTTCCHHHHHHHHHHHHHHCSCCCCTTHHH------------HTTCSCHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHhCCCCCCHHHHh------------hCCCccHHHHHhc
Confidence 458899999999999999998 4 58887666543 6788888875554
No 165
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=69.74 E-value=2.4 Score=42.73 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=21.9
Q ss_pred cccCCCHHHHHHHHHh-CCCCHHHHhhc
Q 010406 299 EVWGIGPATAQKLYEK-GHRTLDDLKNE 325 (511)
Q Consensus 299 ~I~GvGpktA~~l~~~-Gi~tledL~~~ 325 (511)
+|+|||||||.+|.++ | |++.+.+.
T Consensus 239 Gv~GiG~KtA~kLl~~~g--sle~i~~~ 264 (336)
T 1rxw_A 239 GVKGVGVKKALNYIKTYG--DIFRALKA 264 (336)
T ss_dssp CCTTCCHHHHHHHHHHHS--SHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHcC--CHHHHHHh
Confidence 7999999999999998 5 78888754
No 166
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=68.90 E-value=2.6 Score=42.25 Aligned_cols=25 Identities=32% Similarity=0.326 Sum_probs=22.5
Q ss_pred cccCCCHHHHHHHHHhCCCCHHHHh-hc
Q 010406 299 EVWGIGPATAQKLYEKGHRTLDDLK-NE 325 (511)
Q Consensus 299 ~I~GvGpktA~~l~~~Gi~tledL~-~~ 325 (511)
+|+|||||||.+|.++ .|++.+. ..
T Consensus 229 GvpGiG~ktA~kli~~--gsle~i~~~~ 254 (326)
T 1a76_A 229 GVKGIGFKRAYELVRS--GVAKDVLKKE 254 (326)
T ss_dssp TTTTCCHHHHHHHHHH--TCHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHc--CCHHHHHHHH
Confidence 7999999999999999 8999987 53
No 167
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=68.29 E-value=4.3 Score=32.91 Aligned_cols=44 Identities=23% Similarity=0.268 Sum_probs=30.6
Q ss_pred CchhhHHHHhhchhHHHHHHhcccCCCHHHHHHHHHhCCCCHHHHh
Q 010406 278 KLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 323 (511)
Q Consensus 278 ~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~Gi~tledL~ 323 (511)
++.++.++-++ |. .=+-.+.|+||||..+++|-++||..--.|.
T Consensus 3 ts~Kh~~Fv~E-Pm-geK~V~evpGIG~~~~~~L~~~Gf~kAy~lL 46 (89)
T 1ci4_A 3 TSQKHRDFVAE-PM-GEKPVGSLAGIGEVLGKKLEERGFDKAYVVL 46 (89)
T ss_dssp SCHHHHHHHTS-CC-TTCCGGGSTTCCHHHHHHHHHTTCCSHHHHH
T ss_pred ccHHHHHHHhC-CC-CCCCcccCCCcCHHHHHHHHHcCccHHHHHH
Confidence 34455554432 21 1134579999999999999999999877766
No 168
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=67.24 E-value=3.1 Score=35.37 Aligned_cols=63 Identities=19% Similarity=0.288 Sum_probs=36.5
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhcccCCCHHHHHHHHHh-------CCCCHHHHh
Q 010406 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-------GHRTLDDLK 323 (511)
Q Consensus 252 s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~-------Gi~tledL~ 323 (511)
.+++|.++ |||...++|+.+ .|. .-++.+..- .-+.|..|+|||+.+|.+|.+. |+.|-.|+.
T Consensus 24 ~I~~L~~~-GIg~~~i~kL~e---AG~-~Tve~va~a----~~~eL~~i~GIse~ka~kIi~aA~kl~~~gF~ta~e~~ 93 (114)
T 1b22_A 24 PISRLEQC-GINANDVKKLEE---AGF-HTVEAVAYA----PKKELINIKGISEAKADKILAEAAKLVPMGFTTATEFH 93 (114)
T ss_dssp CHHHHHHT-TCSHHHHHHHHT---TCC-SSGGGBTSS----BHHHHHTTTTCSTTHHHHHHHHHHHHSCCC--------
T ss_pred cHHHHHhc-CCCHHHHHHHHH---cCc-CcHHHHHhC----CHHHHHHccCCCHHHHHHHHHHHHHHcccCCCcHHHHH
Confidence 45555555 999998888664 443 334444322 2345669999999999999752 566666655
No 169
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=67.24 E-value=5.1 Score=37.82 Aligned_cols=43 Identities=16% Similarity=0.243 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHhc-CCccc-cchhhhcCCCCCCHHHHHHHHHHH
Q 010406 232 RSFSYYKAIPVIEK-LPFKI-ESADQVKGLPGIGKSMQDHIQEIV 274 (511)
Q Consensus 232 r~~aY~rAa~~l~~-l~~~i-~s~~~l~~lpgIG~~ia~kI~Eil 274 (511)
|+..-..+|..+.. +...+ ...++|..|||||+.+|+.|.-+.
T Consensus 91 KA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~TA~~il~~~ 135 (221)
T 1kea_A 91 RAEQLKELARVVINDYGGRVPRNRKAILDLPGVGKYTCAAVMCLA 135 (221)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSCHHHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCCchHHHHHHHhCCCCcHHHHHHHHHHh
Confidence 56666666666543 22233 346889999999999999987553
No 170
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=67.14 E-value=6.8 Score=39.43 Aligned_cols=53 Identities=21% Similarity=0.320 Sum_probs=38.3
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhcccCCCHHHHHHHHHh--CCCC
Q 010406 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRT 318 (511)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~--Gi~t 318 (511)
+..|||||+++++++..+ -+..+.+|.+-.+....+.| |+.+..++|+. |+..
T Consensus 180 v~~l~GiG~~~~~~L~~~----Gi~t~~dL~~~~~~~L~~~f------G~~~g~~l~~~a~G~d~ 234 (352)
T 1jx4_A 180 IADVPGIGNITAEKLKKL----GINKLVDTLSIEFDKLKGMI------GEAKAKYLISLARDEYN 234 (352)
T ss_dssp GGGSTTCCHHHHHHHHTT----TCCBGGGGGSSCHHHHHHHH------CHHHHHHHHHHHTTCCC
T ss_pred CCcccccCHHHHHHHHHc----CCchHHHHHCCCHHHHHHhc------ChhHHHHHHHHhCCCCC
Confidence 677899999988886643 35666677665555566667 77878888875 8864
No 171
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=67.09 E-value=2.3 Score=34.82 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=26.3
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHH
Q 010406 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRT 293 (511)
Q Consensus 252 s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~ 293 (511)
|+.+|++||+||+.+.+...++ -+.-+++|+.--+..+
T Consensus 2 sm~~L~dLPNig~~~e~~L~~~----GI~t~~~Lr~~Ga~~a 39 (93)
T 3mab_A 2 SLANLSELPNIGKVLEQDLIKA----GIKTPVELKDVGSKEA 39 (93)
T ss_dssp -CCCGGGSTTCCHHHHHHHHHT----TCCSHHHHHHHCHHHH
T ss_pred CHHHHhhCCCCCHHHHHHHHHc----CCCCHHHHHhCCHHHH
Confidence 5778999999999998876654 4556667665444333
No 172
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=66.56 E-value=7.9 Score=47.45 Aligned_cols=29 Identities=10% Similarity=0.148 Sum_probs=26.7
Q ss_pred HhcccCCCHHHHHHHHHhCCCCHHHHhhc
Q 010406 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (511)
Q Consensus 297 f~~I~GvGpktA~~l~~~Gi~tledL~~~ 325 (511)
|.+|||||+.+|+++|+.||+|+.||.+.
T Consensus 1559 L~qip~i~~~~ar~l~~~gi~t~~dl~~~ 1587 (1724)
T 4f92_B 1559 LKQLPHFTSEHIKRCTDKGVESVFDIMEM 1587 (1724)
T ss_dssp GGGSTTCCHHHHHHHHHHTCCSHHHHHSS
T ss_pred EecCCCCCHHHHHHHHHCCCCCHHHHHhC
Confidence 46999999999999999999999999854
No 173
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=66.38 E-value=7.2 Score=41.65 Aligned_cols=50 Identities=26% Similarity=0.353 Sum_probs=36.7
Q ss_pred CCCeEEEEccceeecCCc-cCCeeEEEecCCcchhhhHHHHHHHHHHHhcc
Q 010406 366 LPEVIILCGGSYRRGKAS-CGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKF 415 (511)
Q Consensus 366 ~p~~~v~~~Gs~RRgke~-~gDvDiLit~~~~~~~~~~l~~~v~~l~~~g~ 415 (511)
.++++|.+.||||-|--. .+|||+++..|.......++..+.+.|++...
T Consensus 92 ~~~~~v~~FGS~~lG~~~p~SDID~~~v~p~~~~~~dff~~l~~~L~~~~~ 142 (514)
T 1q79_A 92 NVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRSDFFTSFYDKLKLQEE 142 (514)
T ss_dssp TCBCEEEEEHHHHHTCCCTTCCEEEEEEECTTSCHHHHTTHHHHHHHTCTT
T ss_pred cCCceEEEeeeeccCCCCCCCceeEEEecCCcCCHHHHHHHHHHHHhcCcc
Confidence 467899999999998753 57999999877654334566677777776443
No 174
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=65.66 E-value=2.3 Score=42.98 Aligned_cols=49 Identities=24% Similarity=0.329 Sum_probs=34.9
Q ss_pred HHHHhcccCCCHHHHHHHHHh---C-CCCHHHHhhcc------Ccchhhhhcccchhhh
Q 010406 294 ISLFGEVWGIGPATAQKLYEK---G-HRTLDDLKNED------SLTHSQRLGLKYFDDI 342 (511)
Q Consensus 294 l~lf~~I~GvGpktA~~l~~~---G-i~tledL~~~~------~L~~~q~~Glk~~~d~ 342 (511)
+..+++|||||+++|+++.+- | +..+++|+.+. .|....|+|.+....|
T Consensus 56 ~~~l~~LpGIG~~~A~kI~E~l~tG~~~~le~l~~~~~~~~l~~l~~V~GiGpk~a~~l 114 (335)
T 2fmp_A 56 GAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKF 114 (335)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHTTSTTCCHHHHHHH
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCcHHHHHHHcccchhHHHHHhCCCCCCHHHHHHH
Confidence 334679999999999998873 4 57788887542 2556677776665555
No 175
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=65.25 E-value=2.5 Score=38.14 Aligned_cols=23 Identities=26% Similarity=0.189 Sum_probs=19.6
Q ss_pred chhhhcCCCCCCHHHHHHHHHHH
Q 010406 252 SADQVKGLPGIGKSMQDHIQEIV 274 (511)
Q Consensus 252 s~~~l~~lpgIG~~ia~kI~Eil 274 (511)
+.++|.+|||||+.+|+-|.=|.
T Consensus 102 ~~~~L~~LpGVG~yTAdav~~F~ 124 (161)
T 4e9f_A 102 QWKYPIELHGIGKYGNDSYRIFC 124 (161)
T ss_dssp CCSSGGGSTTCCHHHHHHHHHHT
T ss_pred ChhhhhcCCCchHHHHHHHHHHH
Confidence 45789999999999999987554
No 176
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=64.74 E-value=7.4 Score=30.34 Aligned_cols=23 Identities=4% Similarity=0.297 Sum_probs=20.6
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHh
Q 010406 254 DQVKGLPGIGKSMQDHIQEIVTT 276 (511)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~t 276 (511)
+++..++|+|++..+.|.+.|+.
T Consensus 41 ~dLlki~n~G~kSl~EI~~~L~~ 63 (73)
T 1z3e_B 41 EDMMKVRNLGRKSLEEVKAKLEE 63 (73)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999863
No 177
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=64.19 E-value=11 Score=40.32 Aligned_cols=49 Identities=29% Similarity=0.445 Sum_probs=36.6
Q ss_pred CeEEEEccceeecCC-ccCCeeEEEecCCcchhhhHHHHHHHHHHHhcce
Q 010406 368 EVIILCGGSYRRGKA-SCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFL 416 (511)
Q Consensus 368 ~~~v~~~Gs~RRgke-~~gDvDiLit~~~~~~~~~~l~~~v~~l~~~g~l 416 (511)
+++|.+.||||-|-- -.+|||++|..|..-....+|..+.+.|++.+.+
T Consensus 81 ~~~V~~FGSy~lG~~~p~SDID~~v~~p~~~~~~dff~~l~~~L~~~~~v 130 (530)
T 2hhp_A 81 GGKIFTYGSYRLGVHGPGSDIDTLVVVPKHVTREDFFTVFDSLLRERKEL 130 (530)
T ss_dssp BCEEEEEHHHHHTCCCTTCCEEEEEEECTTCCHHHHHHHHHHHHHTCTTE
T ss_pred CceEEEecccccCCCCCCCceeEEEecCCcCCHHHHHHHHHHHHhcCCCC
Confidence 689999999999875 3589999998876444456777777777765433
No 178
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=63.80 E-value=4.4 Score=41.95 Aligned_cols=55 Identities=22% Similarity=0.380 Sum_probs=38.5
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhcccCCCHHHHHHHHHhCCCCHHHH
Q 010406 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL 322 (511)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~Gi~tledL 322 (511)
|..|||||+..|+.+-| .-|+++.+-.. ....| ..-|||.|+|+++ .|++||+..
T Consensus 470 LtAIaGIGp~tAeRLLE--kFGSVe~Vm~A-------teDEL-RedGIGekqarrI--~gl~~l~~~ 524 (685)
T 4gfj_A 470 LISIRGIDRERAERLLK--KYGGYSKVREA-------GVEEL-REDGLTDAQIREL--KGLKTLESI 524 (685)
T ss_dssp HHTSTTCCHHHHHHHHH--HHTSHHHHHHS-------CHHHH-HHTTCCHHHHHHH--HTCHHHHHH
T ss_pred eeccCCCCHHHHHHHHH--HhcCHHHHHhC-------CHHHH-HHccccHHHHHHH--hhHHHHHHH
Confidence 67888999988888766 34666665442 12234 4499999999988 477777644
No 179
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=63.50 E-value=2 Score=43.36 Aligned_cols=50 Identities=24% Similarity=0.223 Sum_probs=34.7
Q ss_pred HHHHhcccCCCHHHHHHHHHh---C-CCCHHHHhhcc---C-cchhhhhcccchhhhc
Q 010406 294 ISLFGEVWGIGPATAQKLYEK---G-HRTLDDLKNED---S-LTHSQRLGLKYFDDIK 343 (511)
Q Consensus 294 l~lf~~I~GvGpktA~~l~~~---G-i~tledL~~~~---~-L~~~q~~Glk~~~d~~ 343 (511)
+..+++|||||+++|+++.+- | +..+++|+..- . |+...|+|.+....|-
T Consensus 56 ~~~l~~lpGIG~~~A~kI~E~l~tG~~~~le~l~~~~p~l~ll~~v~GiG~k~a~~l~ 113 (335)
T 2bcq_A 56 YQEACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWY 113 (335)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHHSSSCGGGGGCCTTHHHHHHHHTSTTCCHHHHHHHH
T ss_pred HHHHhcCCCccHHHHHHHHHHHHcCCchHHHHHhhhhHHHHHHhcCCCcCHHHHHHHH
Confidence 434779999999999999873 4 67788875322 1 3466677776666553
No 180
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=63.47 E-value=7.2 Score=39.39 Aligned_cols=65 Identities=17% Similarity=0.230 Sum_probs=41.9
Q ss_pred HHHHHH-HHHHHHHHhhhcCCCeEEEEcccee-ecC-CccCCeeEEEecCC----cc---h--------hhhHHHHHHHH
Q 010406 348 RHEVEQ-MERLLQKAGEEVLPEVIILCGGSYR-RGK-ASCGDLDVVIMHPD----RK---S--------HKGFLSKYVKK 409 (511)
Q Consensus 348 r~ea~~-~~~iv~~~~~~~~p~~~v~~~Gs~R-Rgk-e~~gDvDiLit~~~----~~---~--------~~~~l~~~v~~ 409 (511)
|.++.. ++.+++. ..|+++|.+-|||+ -|- .-.+|||++|..+. +. . ...+|.++-+.
T Consensus 49 r~~~~~~l~~~i~~----~~p~~~v~~FGS~~vtGl~lp~SDIDl~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 124 (353)
T 2ikf_A 49 VDATYRLVLDCVAA----VDPLMRLYTFGSTVVYGVHEKGSDVDFVVLNKTDVEDGKGGDAATQVAKGLQADILAKLARV 124 (353)
T ss_dssp HHHHHHHHHHHHHH----HCTTCEEEEESHHHHHSSCCTTCCEEEEEECHHHHHSTTCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HCCCcEEEEecCccccCCCCCCcceeEEEeecccccccccccchhhhhhhhHHHHHHHHHHH
Confidence 444433 5555554 58999999999998 665 34689999997542 10 0 13456666666
Q ss_pred HHHhcce
Q 010406 410 LKEMKFL 416 (511)
Q Consensus 410 l~~~g~l 416 (511)
|++.+..
T Consensus 125 L~~~~~~ 131 (353)
T 2ikf_A 125 IRQKHLS 131 (353)
T ss_dssp HHHHCTT
T ss_pred HHhcCCC
Confidence 7766653
No 181
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=63.40 E-value=2.1 Score=43.68 Aligned_cols=46 Identities=13% Similarity=0.191 Sum_probs=34.0
Q ss_pred HhcccCCCHHHHHHHHHh---C-CCCHHHHhhcc------Ccchhhhhcccchhhh
Q 010406 297 FGEVWGIGPATAQKLYEK---G-HRTLDDLKNED------SLTHSQRLGLKYFDDI 342 (511)
Q Consensus 297 f~~I~GvGpktA~~l~~~---G-i~tledL~~~~------~L~~~q~~Glk~~~d~ 342 (511)
+++|||||+++|+++.+- | +..+++|+.+. .|....|+|.+....|
T Consensus 63 l~~lpGIG~~~A~kI~E~l~tG~~~~le~L~~d~~~~~l~~l~~I~GvG~kta~~l 118 (360)
T 2ihm_A 63 LHGLPYFGEHSTRVIQELLEHGTCEEVKQVRCSERYQTMKLFTQVFGVGVKTANRW 118 (360)
T ss_dssp GTTCTTCCHHHHHHHHHHHHHSCCHHHHHHHHSHHHHHHHHHHTSTTCCHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHHcCChHHHHHHhcccchHHHHHHhCCCCCCHHHHHHH
Confidence 679999999999998863 4 67888887532 3566677776665555
No 182
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=62.88 E-value=2.8 Score=48.50 Aligned_cols=32 Identities=16% Similarity=0.145 Sum_probs=26.7
Q ss_pred HHHHHhcccCCCHHHHHHHHH---h---CCCCHHHHhh
Q 010406 293 TISLFGEVWGIGPATAQKLYE---K---GHRTLDDLKN 324 (511)
Q Consensus 293 ~l~lf~~I~GvGpktA~~l~~---~---Gi~tledL~~ 324 (511)
...+|..|+||||++|+.+.+ + .+.|.+||.+
T Consensus 715 s~~lL~~v~GlGp~kA~~Iv~~r~~~~G~f~sr~~L~~ 752 (1030)
T 3psf_A 715 YASALKYISGFGKRKAIDFLQSLQRLNEPLLARQQLIT 752 (1030)
T ss_dssp HHTTGGGSTTCCHHHHHHHHHHHHHTCSCCCCTTHHHH
T ss_pred CHHHHhhCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHh
Confidence 567888999999999999953 2 4799999986
No 183
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=62.71 E-value=4 Score=41.83 Aligned_cols=32 Identities=25% Similarity=0.605 Sum_probs=25.1
Q ss_pred HHHHHhc------ccCCCHHHHHHHHHhCCCCHHHHhhc
Q 010406 293 TISLFGE------VWGIGPATAQKLYEKGHRTLDDLKNE 325 (511)
Q Consensus 293 ~l~lf~~------I~GvGpktA~~l~~~Gi~tledL~~~ 325 (511)
-+.+|++ |||||||||.+|.++ +.|++.+...
T Consensus 224 d~~~L~G~D~~d~IpGIG~KtA~kLl~~-~gsle~i~~~ 261 (379)
T 1ul1_X 224 DLCILLGSDYCESIRGIGPKRAVDLIQK-HKSIEEIVRR 261 (379)
T ss_dssp HHHHHHHCSSSCCCTTCCHHHHHHHHHH-SSSHHHHHTT
T ss_pred HHHHHhCCCcCCCCCCcCHHHHHHHHHH-cCCHHHHHHH
Confidence 3445556 999999999999997 2489988754
No 184
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=62.39 E-value=3.5 Score=38.81 Aligned_cols=32 Identities=19% Similarity=0.444 Sum_probs=23.4
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHH
Q 010406 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF 285 (511)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l 285 (511)
+++..|||||++.|.++.=.|-.-.-..++.|
T Consensus 26 ~~l~~LPGIG~KsA~RlA~hLL~~~~~~~~~L 57 (212)
T 3vdp_A 26 EELSKLPGIGPKTAQRLAFFIINMPLDEVRSL 57 (212)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHcCCHHHHHHH
Confidence 67899999999999999876654333334433
No 185
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=62.15 E-value=5.9 Score=39.08 Aligned_cols=66 Identities=20% Similarity=0.276 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHhc-CCccc-cchhhhcC-CCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhcccCCC
Q 010406 232 RSFSYYKAIPVIEK-LPFKI-ESADQVKG-LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIG 304 (511)
Q Consensus 232 r~~aY~rAa~~l~~-l~~~i-~s~~~l~~-lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvG 304 (511)
|+..-.++|..|.. +...+ .+.++|.. |||||..+|+.|.-+. -|.-. +- ....+..++.++.+++
T Consensus 104 KA~~L~~~A~~i~~~~~g~~p~~~~~Ll~~LpGIG~kTA~~iL~~a-~g~p~----~~--VDt~V~Rv~~Rlg~i~ 172 (287)
T 3n5n_X 104 RGRRLQEGARKVVEELGGHMPRTAETLQQLLPGVGRYTAGAIASIA-FGQAT----GV--VDGNVARVLCRVRAIG 172 (287)
T ss_dssp HHHHHHHHHHHHHHHSTTCCCSSHHHHHHHSTTCCHHHHHHHHHHH-SCCCC----CC--CCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHcCCCCHHHHHHHHHHh-cCCCC----cc--ccHHHHHHHHHhCCCC
Confidence 66666666666543 33333 24688988 9999999999997543 34421 11 2334666776666655
No 186
>2kng_A Protein LSR2; DNA-binding domain, immune response, DNA binding protein; NMR {Mycobacterium tuberculosis}
Probab=62.09 E-value=5.1 Score=29.47 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=19.9
Q ss_pred HHHHHHHHHHcCCccCCCCCcc
Q 010406 449 NRRLRLLAESKGYRLDDTGLFP 470 (511)
Q Consensus 449 nr~lR~~A~~kg~~L~~~gL~~ 470 (511)
++.+|.||++.||..++.|-..
T Consensus 15 ~~aIR~WAr~nG~~VsdRGRIp 36 (55)
T 2kng_A 15 SAAIREWARRNGHNVSTRGRIP 36 (55)
T ss_dssp HHHHHHHHHHTTCCCCSSSCCC
T ss_pred hHHHHHHHHHcCCcCCCCCCCC
Confidence 7899999999999999999764
No 187
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=61.74 E-value=3.8 Score=46.03 Aligned_cols=32 Identities=28% Similarity=0.480 Sum_probs=26.6
Q ss_pred HHHHHhcccCCCHHHHHHHHH---h--CCCCHHHHhh
Q 010406 293 TISLFGEVWGIGPATAQKLYE---K--GHRTLDDLKN 324 (511)
Q Consensus 293 ~l~lf~~I~GvGpktA~~l~~---~--Gi~tledL~~ 324 (511)
...+|..|+||||++|+.+.+ + +|.|.+||.+
T Consensus 506 s~~~L~~v~GiG~~~A~~Iv~yR~~~G~f~sr~~L~~ 542 (785)
T 3bzc_A 506 SAALLARISGLNSTLAQNIVAHRDANGAFRTRDELKK 542 (785)
T ss_dssp CHHHHHTSTTCCHHHHHHHHHHHHHHCCCSSGGGGGG
T ss_pred CHHHHhhcCCCCHHHHHHHHHHHHhcCCCCCHHHHHh
Confidence 356788999999999999764 2 6899999975
No 188
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=61.51 E-value=6.6 Score=39.87 Aligned_cols=66 Identities=12% Similarity=0.184 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHhc-CCccc-cchhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhcccCCC
Q 010406 232 RSFSYYKAIPVIEK-LPFKI-ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIG 304 (511)
Q Consensus 232 r~~aY~rAa~~l~~-l~~~i-~s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvG 304 (511)
|+..-.++|..|.. +...+ ...++|..|||||+.+|+.|.-+. -|.-. + -....+...+.++.|+.
T Consensus 94 ra~~l~~~a~~~~~~~~g~~p~~~~~L~~l~GIG~~tA~~il~~~-~~~~~----~--~vD~~v~Rv~~rl~~~~ 161 (369)
T 3fsp_A 94 RVRNLHAAVKEVKTRYGGKVPDDPDEFSRLKGVGPYTVGAVLSLA-YGVPE----P--AVDGNVMRVLSRLFLVT 161 (369)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCSHHHHHTSTTCCHHHHHHHHHHH-HCCCC----C--CCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHcCCCChhHHHHHhcCCCcCHHHHHHHHHHH-CCCCc----c--cccHHHHHHHHHHcCcc
Confidence 66666666666543 22222 356889999999999999998775 33321 1 11234666666666654
No 189
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=60.98 E-value=6.3 Score=33.48 Aligned_cols=25 Identities=12% Similarity=0.448 Sum_probs=21.4
Q ss_pred HHHHHhcccCCCHHHHHHHHHh-CCC
Q 010406 293 TISLFGEVWGIGPATAQKLYEK-GHR 317 (511)
Q Consensus 293 ~l~lf~~I~GvGpktA~~l~~~-Gi~ 317 (511)
+.--|+.|+|||+.+|..+.+. ||.
T Consensus 14 v~~aLt~I~GIG~~~A~~I~~~~gid 39 (114)
T 3r8n_M 14 AVIALTSIYGVGKTRSKAILAAAGIA 39 (114)
T ss_dssp HHHHGGGSTTCCHHHHHHHHHHTTCC
T ss_pred eHhhHhhhcCcCHHHHHHHHHHcCcC
Confidence 5556789999999999999987 875
No 190
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=60.75 E-value=9 Score=36.24 Aligned_cols=43 Identities=16% Similarity=0.346 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHh-cCCccc-cchhhhcCCCCCCHHHHHHHHHHH
Q 010406 232 RSFSYYKAIPVIE-KLPFKI-ESADQVKGLPGIGKSMQDHIQEIV 274 (511)
Q Consensus 232 r~~aY~rAa~~l~-~l~~~i-~s~~~l~~lpgIG~~ia~kI~Eil 274 (511)
|+..-..++..+. .+...+ ...++|..|||||+.+|+.|.-+.
T Consensus 89 KA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~TA~~il~~a 133 (226)
T 1orn_A 89 KARNIQKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSVA 133 (226)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCSCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHHCCCccHHHHHHHHHHH
Confidence 5555566666554 333333 346889999999999999988654
No 191
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=58.96 E-value=8 Score=36.10 Aligned_cols=43 Identities=14% Similarity=0.314 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHhc-CCccc-cchhhhcCCCCCCHHHHHHHHHHH
Q 010406 232 RSFSYYKAIPVIEK-LPFKI-ESADQVKGLPGIGKSMQDHIQEIV 274 (511)
Q Consensus 232 r~~aY~rAa~~l~~-l~~~i-~s~~~l~~lpgIG~~ia~kI~Eil 274 (511)
|+..-..+|..+.. +..++ ...++|..|||||+.+|+.|.=+.
T Consensus 85 KA~~l~~~a~~~~~~~~g~~~~~~~~L~~l~GIG~~tA~~il~~~ 129 (211)
T 2abk_A 85 KAENIIKTCRILLEQHNGEVPEDRAALEALPGVGRKTANVVLNTA 129 (211)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCSCHHHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCchHHHHHHHhCCCCChHHHHHHHHHH
Confidence 66666677766643 33333 346789999999999999987654
No 192
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=58.95 E-value=13 Score=37.46 Aligned_cols=53 Identities=17% Similarity=0.293 Sum_probs=40.3
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhcccCCCHHHHHHHHHh--CCCC
Q 010406 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRT 318 (511)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~--Gi~t 318 (511)
+..|||||+.+++++..+ -+..+.+|.+-.+....+.| |+++..++|+. |+..
T Consensus 180 v~~l~GiG~~~~~~L~~~----GI~Ti~dL~~~~~~~L~~~f------G~~~g~~l~~~a~G~d~ 234 (356)
T 4dez_A 180 PDALWGVGPKTTKKLAAM----GITTVADLAVTDPSVLTTAF------GPSTGLWLLLLAKGGGD 234 (356)
T ss_dssp GGGSTTCCHHHHHHHHHT----TCCSHHHHHTSCHHHHHHHH------CHHHHHHHHHHHTTCCC
T ss_pred HHHHcCCchhHHHHHHHc----CCCeecccccCCHHHHHHHh------CChHHHHHHHHHcCCCc
Confidence 678999999999987754 35566777765666677777 88888998875 8753
No 193
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=58.90 E-value=4.2 Score=41.62 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=12.8
Q ss_pred HHHHhcccCCCHHHHHHHHH
Q 010406 294 ISLFGEVWGIGPATAQKLYE 313 (511)
Q Consensus 294 l~lf~~I~GvGpktA~~l~~ 313 (511)
.+.|.+|.|||+++|+.+++
T Consensus 346 ~eEL~~VeGIGe~rAr~Ire 365 (377)
T 3c1y_A 346 VEDLKKVEGIGEKRARAISE 365 (377)
T ss_dssp HHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHhccCccHHHHHHHHH
Confidence 44556777777777776654
No 194
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=57.95 E-value=5.7 Score=35.24 Aligned_cols=25 Identities=12% Similarity=0.214 Sum_probs=20.6
Q ss_pred HHHHHhcccCCCHHHHHHHHHh-CCC
Q 010406 293 TISLFGEVWGIGPATAQKLYEK-GHR 317 (511)
Q Consensus 293 ~l~lf~~I~GvGpktA~~l~~~-Gi~ 317 (511)
+.--|+.|+|||+++|..+.+. ||.
T Consensus 28 v~~ALt~I~GIG~~~A~~I~~~~gid 53 (146)
T 3u5c_S 28 IVYALTTIKGVGRRYSNLVCKKADVD 53 (146)
T ss_dssp TTTTGGGSTTCCHHHHHHHHHHHTCC
T ss_pred hHhhHhhhcCCCHHHHHHHHHHcCCC
Confidence 3445789999999999999886 774
No 195
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=57.54 E-value=4.4 Score=40.76 Aligned_cols=26 Identities=15% Similarity=0.144 Sum_probs=21.2
Q ss_pred cccCCCHHHHHHHHHhCCCCHHHHhhc
Q 010406 299 EVWGIGPATAQKLYEKGHRTLDDLKNE 325 (511)
Q Consensus 299 ~I~GvGpktA~~l~~~Gi~tledL~~~ 325 (511)
+|+|||||||.+|.++. .|++.+...
T Consensus 241 gv~GiG~ktA~kli~~~-gsle~il~~ 266 (340)
T 1b43_A 241 GIKGIGLKKALEIVRHS-KDPLAKFQK 266 (340)
T ss_dssp CSTTCCHHHHHHHHHTC-SSGGGGTGG
T ss_pred CCCCccHHHHHHHHHHc-CCHHHHHcC
Confidence 79999999999999973 477777643
No 196
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=57.47 E-value=4.5 Score=37.83 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=18.5
Q ss_pred chhhhcCCCCCCHHHHHHHHHH
Q 010406 252 SADQVKGLPGIGKSMQDHIQEI 273 (511)
Q Consensus 252 s~~~l~~lpgIG~~ia~kI~Ei 273 (511)
..++|.+|||||+.+|+.|--+
T Consensus 115 ~~~~L~~lpGIG~kTA~~il~~ 136 (207)
T 3fhg_A 115 ARERLLNIKGIGMQEASHFLRN 136 (207)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHcCCCcCHHHHHHHHHH
Confidence 3577999999999999998643
No 197
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=57.41 E-value=2.6 Score=42.59 Aligned_cols=30 Identities=40% Similarity=0.582 Sum_probs=26.6
Q ss_pred HHhcccCCCHHHHHHHHHhCCCCHHHHhhc
Q 010406 296 LFGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (511)
Q Consensus 296 lf~~I~GvGpktA~~l~~~Gi~tledL~~~ 325 (511)
.+..++||||.++++|-+.||.|++++...
T Consensus 36 ~l~~l~Gi~~~~~~kL~~ag~~t~~~~~~~ 65 (349)
T 1pzn_A 36 SIEDLPGVGPATAEKLREAGYDTLEAIAVA 65 (349)
T ss_dssp CSSCCTTCCHHHHHHHHTTTCCSHHHHHTC
T ss_pred cHHHcCCCCHHHHHHHHHcCCCcHHHHHhC
Confidence 456889999999999999999999999743
No 198
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=56.89 E-value=11 Score=36.92 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=20.2
Q ss_pred hHHHHHHhcccCCCHHHHHHHHHh
Q 010406 291 VRTISLFGEVWGIGPATAQKLYEK 314 (511)
Q Consensus 291 ~~~l~lf~~I~GvGpktA~~l~~~ 314 (511)
..+++.|++++||||+||..+--.
T Consensus 203 ~~~~~~L~~lpGIG~~TA~~ill~ 226 (282)
T 1mpg_A 203 EQAMKTLQTFPGIGRWTANYFALR 226 (282)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcCHHHHHHHHHH
Confidence 457888899999999999987654
No 199
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=56.88 E-value=4 Score=41.25 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=17.3
Q ss_pred cccCCCHHHHHHHHHhCCCCHHHHhh
Q 010406 299 EVWGIGPATAQKLYEKGHRTLDDLKN 324 (511)
Q Consensus 299 ~I~GvGpktA~~l~~~Gi~tledL~~ 324 (511)
+|+|||||||.+|.++. .|++.+..
T Consensus 238 Gv~GIG~KtA~kLi~~~-gsle~i~~ 262 (346)
T 2izo_A 238 GIRGIGPERALKIIKKY-GKIEKAME 262 (346)
T ss_dssp CSTTCCHHHHHHHHHHS-SCC-----
T ss_pred CCCCcCHHHHHHHHHHc-CCHHHHHH
Confidence 79999999999999982 36777654
No 200
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=56.46 E-value=4.1 Score=47.91 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=31.9
Q ss_pred HHHHHhcccCCCHHHHHHHHH---h---CCCCHHHHhhccCcchhhhhcccchhhh
Q 010406 293 TISLFGEVWGIGPATAQKLYE---K---GHRTLDDLKNEDSLTHSQRLGLKYFDDI 342 (511)
Q Consensus 293 ~l~lf~~I~GvGpktA~~l~~---~---Gi~tledL~~~~~L~~~q~~Glk~~~d~ 342 (511)
.-.+|..|+||||++|+.+.+ + .+.|.+||.+- .++|-+.|+..
T Consensus 712 s~~lL~~v~GlGp~kA~~Iv~~r~~~~G~f~sr~~L~~v------~~iG~k~fe~~ 761 (1219)
T 3psi_A 712 YASALKYISGFGKRKAIDFLQSLQRLNEPLLARQQLITH------NILHKTIFMNS 761 (1219)
T ss_dssp HHTTGGGSTTCCHHHHHHHHHHHHHHCSCCCCTTHHHHT------TCSCHHHHHHH
T ss_pred CHHHHHhCCCCCHHHHHHHHHHHHHhCCCCCCHHHHhhC------CCccHHHHHhc
Confidence 567888999999999999952 2 47899999863 34554444443
No 201
>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} SCOP: a.24.16.1 d.218.1.1 PDB: 1kan_A
Probab=55.83 E-value=11 Score=36.08 Aligned_cols=51 Identities=16% Similarity=0.210 Sum_probs=34.0
Q ss_pred CcCHHHHHH-HHHHHHHHhhhcCCCe-EEEEccceeecCCc-cCCeeEEEecCC
Q 010406 345 RIPRHEVEQ-MERLLQKAGEEVLPEV-IILCGGSYRRGKAS-CGDLDVVIMHPD 395 (511)
Q Consensus 345 ~i~r~ea~~-~~~iv~~~~~~~~p~~-~v~~~Gs~RRgke~-~gDvDiLit~~~ 395 (511)
.|.+.++.. +..++..+....-..+ .+.+-||+=||..+ -.||||+|...+
T Consensus 6 ~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~lfGS~arg~~~~~SDiD~~v~~~~ 59 (253)
T 1kny_A 6 IMTREERMKIVHEIKERILDKYGDDVKAIGVYGSLGRQTDGPYSDIEMMCVMST 59 (253)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHGGGEEEEEEEHHHHHTCCCTTCCEEEEEEESS
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCeeEEEEEccccCCCCCCCCCeeEEEEecC
Confidence 355666555 4666665553322235 68899999999875 489999986544
No 202
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=55.67 E-value=12 Score=39.53 Aligned_cols=40 Identities=30% Similarity=0.503 Sum_probs=31.0
Q ss_pred HHHHHHhhhcCCCeEEEEccce-eecCC-ccCCeeEEEecCC
Q 010406 356 RLLQKAGEEVLPEVIILCGGSY-RRGKA-SCGDLDVVIMHPD 395 (511)
Q Consensus 356 ~iv~~~~~~~~p~~~v~~~Gs~-RRgke-~~gDvDiLit~~~ 395 (511)
+-|+.+++.+.|++.|.+.||| +-|.- -.+|||+++..++
T Consensus 46 ~~l~~~v~~~~p~a~v~~FGS~v~~Gl~lp~SDiDl~~~~~~ 87 (468)
T 2b4v_A 46 QQLQGLADKWTPDAKVYCCGSMVTYGQMERGSDLDLACMFDD 87 (468)
T ss_dssp HHHHHHHHHHCTTCEEEEETHHHHHSSCBTTCCEEEEEECSS
T ss_pred HHHHHHHHHHCCCcEEEEeeCchhcCCCCCCCceeEEEecCC
Confidence 3345555557899999999999 66764 6899999998764
No 203
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=55.65 E-value=12 Score=38.74 Aligned_cols=53 Identities=19% Similarity=0.380 Sum_probs=39.0
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhcccCCCHHHHHHHHHh--CCCC
Q 010406 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRT 318 (511)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~--Gi~t 318 (511)
+.+|||||+++++++..+ | +..+.+|.+-.+....+.| |.+.+..||+. |+..
T Consensus 236 v~~l~GIG~~t~~~L~~l---G-I~TigdLa~~~~~~L~~~f------G~~~g~~L~~~a~G~d~ 290 (420)
T 3osn_A 236 IKEIPGIGYKTAKCLEAL---G-INSVRDLQTFSPKILEKEL------GISVAQRIQKLSFGEDN 290 (420)
T ss_dssp GGGSTTCCHHHHHHHHHT---T-CCSHHHHHHSCHHHHHHHH------HHHHHHHHHHHHTTCCC
T ss_pred HHHccCCCHHHHHHHHHh---C-CCcHHHHhhCCHHHHHHHh------CchHHHHHHHHhcCCCc
Confidence 678999999999998764 3 4556666654555555666 77889999984 8864
No 204
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=54.69 E-value=14 Score=29.77 Aligned_cols=23 Identities=13% Similarity=0.361 Sum_probs=20.9
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHh
Q 010406 254 DQVKGLPGIGKSMQDHIQEIVTT 276 (511)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~t 276 (511)
+++..++|+|++..+.|.+.|+.
T Consensus 44 ~dLlki~n~G~KSl~EI~~~L~~ 66 (86)
T 3k4g_A 44 VELLXTPNLGXXSLTEIXDVLAS 66 (86)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHHT
T ss_pred HHHhhccccCcccHHHHHHHHHH
Confidence 57899999999999999999864
No 205
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=53.85 E-value=7 Score=34.92 Aligned_cols=26 Identities=12% Similarity=0.219 Sum_probs=21.5
Q ss_pred HHHHHHhcccCCCHHHHHHHHHh-CCC
Q 010406 292 RTISLFGEVWGIGPATAQKLYEK-GHR 317 (511)
Q Consensus 292 ~~l~lf~~I~GvGpktA~~l~~~-Gi~ 317 (511)
.+.--|+.|+|||+++|..+.+. ||.
T Consensus 25 ~v~~ALt~I~GIG~~~A~~I~~~~gid 51 (152)
T 3iz6_M 25 KIMFALTSIKGVGRRFSNIVCKKADID 51 (152)
T ss_dssp BHHHHHTTSTTCCHHHHHHHHHHHTCC
T ss_pred EeHhhhhhccCcCHHHHHHHHHHcCCC
Confidence 35566789999999999999876 764
No 206
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=53.05 E-value=7.1 Score=34.70 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=21.0
Q ss_pred HHHHHhcccCCCHHHHHHHHHh-CCC
Q 010406 293 TISLFGEVWGIGPATAQKLYEK-GHR 317 (511)
Q Consensus 293 ~l~lf~~I~GvGpktA~~l~~~-Gi~ 317 (511)
+.--|+.|+|||+++|..+.+. ||.
T Consensus 21 v~~aLt~I~GIG~~~A~~I~~~~gid 46 (148)
T 3j20_O 21 LRWALTAIKGIGINFATMVCRVAGLD 46 (148)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHHHTCC
T ss_pred ehhhhhhccCcCHHHHHHHHHHhCCC
Confidence 5556789999999999999876 764
No 207
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6
Probab=52.62 E-value=22 Score=35.61 Aligned_cols=26 Identities=31% Similarity=0.534 Sum_probs=14.5
Q ss_pred EEEEccceeecCCccC--CeeEEEecCC
Q 010406 370 IILCGGSYRRGKASCG--DLDVVIMHPD 395 (511)
Q Consensus 370 ~v~~~Gs~RRgke~~g--DvDiLit~~~ 395 (511)
.+...|||.||-..-| ||||+|--+.
T Consensus 56 ~v~~~GSyargT~lrg~sDiDlvV~l~~ 83 (349)
T 1px5_A 56 KVVKGGSSGKGTTLRGRSDADLVVFLTK 83 (349)
T ss_dssp EEEEEEEC--------CEEEEEEEEEES
T ss_pred EEEEecCcCCCcccCCCCceeEEEEECC
Confidence 5778999999988865 9999995543
No 208
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=52.19 E-value=4.3 Score=41.70 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=33.5
Q ss_pred HhcccCCCHHHHHHHHHh---C-CCCHHHHhhcc------Ccchhhhhcccchhhh
Q 010406 297 FGEVWGIGPATAQKLYEK---G-HRTLDDLKNED------SLTHSQRLGLKYFDDI 342 (511)
Q Consensus 297 f~~I~GvGpktA~~l~~~---G-i~tledL~~~~------~L~~~q~~Glk~~~d~ 342 (511)
+++|||||+++|+++.+- | +..+++|+.+. .|..+.|+|.+....|
T Consensus 82 l~~lpGIG~~ia~kI~E~l~tG~~~~le~l~~d~~~~~l~~l~~I~GvGpk~a~~l 137 (381)
T 1jms_A 82 TEGIPCLGDKVKSIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKW 137 (381)
T ss_dssp GTTCSSCCHHHHHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHHTSTTCCHHHHHHH
T ss_pred HhcCCCCcHHHHHHHHHHHHcCCcHHHHHHhcCcchhHHHHHHccCCCCHHHHHHH
Confidence 679999999999999873 5 67888888632 2556667776655544
No 209
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=51.95 E-value=6.6 Score=37.31 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=24.2
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHH
Q 010406 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF 285 (511)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l 285 (511)
+++..|||||++.|.++.-.|-.-.-..++.|
T Consensus 12 ~~l~~LPGIG~KSA~RlA~hLL~~~~~~~~~L 43 (228)
T 1vdd_A 12 RELSRLPGIGPKSAQRLAFHLFEQPREDIERL 43 (228)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHSSSCHHHHHHH
T ss_pred HHHhHCCCCCHHHHHHHHHHHHcCCHHHHHHH
Confidence 67999999999999999877754444444444
No 210
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A*
Probab=51.88 E-value=15 Score=35.59 Aligned_cols=48 Identities=29% Similarity=0.483 Sum_probs=33.7
Q ss_pred CHHHHHH-HHHHHHHHhhhcCCCe-EEEEccceeecCCc-cCCeeEEEecCC
Q 010406 347 PRHEVEQ-MERLLQKAGEEVLPEV-IILCGGSYRRGKAS-CGDLDVVIMHPD 395 (511)
Q Consensus 347 ~r~ea~~-~~~iv~~~~~~~~p~~-~v~~~Gs~RRgke~-~gDvDiLit~~~ 395 (511)
.++++.. +.++++.+... .+++ .+.+-|||-||... -+||||+|...+
T Consensus 18 ~~q~Vq~eL~~ive~L~~~-~~~i~~I~LFGS~ARG~~~~~SDIDilVv~~~ 68 (272)
T 4ebj_A 18 YFQGVQHTIARWVDRLREE-YADAVAILLKGSYARGDAATWSDIDFDVLVST 68 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHH-CTTEEEEEEEHHHHHTCCCTTCCEEEEEEESS
T ss_pred ChHHHHHHHHHHHHHHHHh-cCCceEEEEEeceeCCCCCCCCceEEEEEecC
Confidence 3445543 56676666643 4455 78899999999865 589999996544
No 211
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=51.27 E-value=18 Score=38.52 Aligned_cols=53 Identities=28% Similarity=0.502 Sum_probs=40.7
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhcccCCCHHHHHHHHHh--CCCC
Q 010406 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRT 318 (511)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~--Gi~t 318 (511)
+..|||||+.+++++..+ -+..+.+|.+-.+..+.+.| |+++...||+. |+..
T Consensus 317 V~~l~GIG~~t~~kL~~l----GI~TigDLa~~~~~~L~~~f------G~~~g~~L~~~a~GiD~ 371 (504)
T 3gqc_A 317 VTNLPGVGHSMESKLASL----GIKTCGDLQYMTMAKLQKEF------GPKTGQMLYRFCRGLDD 371 (504)
T ss_dssp GGGSTTCCHHHHHHHHHT----TCCBHHHHTTSCHHHHHHHH------CHHHHHHHHHHTTTCCC
T ss_pred hhHhhCcCHHHHHHHHHc----CCCcHHHHHhccHHHHHHhh------ChhHHHHHHHHhcCCCc
Confidence 688999999999998765 35667777765555566677 88899999974 8853
No 212
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=51.11 E-value=15 Score=29.14 Aligned_cols=23 Identities=4% Similarity=0.297 Sum_probs=20.6
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHh
Q 010406 254 DQVKGLPGIGKSMQDHIQEIVTT 276 (511)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~t 276 (511)
+++..++|+|++..+.|.+.|..
T Consensus 48 ~dLlki~n~G~kSl~EI~~~L~e 70 (79)
T 3gfk_B 48 EDMMKVRNLGRKSLEEVKAKLEE 70 (79)
T ss_dssp HHHTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHhHHHHHHHHHHH
Confidence 57999999999999999998853
No 213
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=50.83 E-value=16 Score=37.14 Aligned_cols=50 Identities=24% Similarity=0.238 Sum_probs=31.9
Q ss_pred HHHcCCChhHHHHHHHHHHHhc-CCc----------cc-cchhhhcCCCCCCHHHHHHHHHH
Q 010406 224 YRALGEDRRSFSYYKAIPVIEK-LPF----------KI-ESADQVKGLPGIGKSMQDHIQEI 273 (511)
Q Consensus 224 ~e~~g~~~r~~aY~rAa~~l~~-l~~----------~i-~s~~~l~~lpgIG~~ia~kI~Ei 273 (511)
+.-.|-..|+..-..+|..+.. ... +. +..++|..|||||..+|+.|.=+
T Consensus 211 Lr~~Gl~~RA~~I~~~A~~i~~~~~G~~~L~~l~~~~~~~~~~~L~~LpGIGp~TA~~ill~ 272 (360)
T 2xhi_A 211 LRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGTCVADKICLM 272 (360)
T ss_dssp HHHTTCTTHHHHHHHHHHHHHHTTCTHHHHHGGGTSCHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHHhccCCccCHHHHhcCCHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 3344554576666666666543 110 11 23467999999999999998754
No 214
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=50.75 E-value=11 Score=35.34 Aligned_cols=43 Identities=21% Similarity=0.128 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHhc-CCc----cc-cchhhhcCCCCCCHHHHHHHHHHH
Q 010406 232 RSFSYYKAIPVIEK-LPF----KI-ESADQVKGLPGIGKSMQDHIQEIV 274 (511)
Q Consensus 232 r~~aY~rAa~~l~~-l~~----~i-~s~~~l~~lpgIG~~ia~kI~Eil 274 (511)
|+..-..++..+.. ... ++ ...++|.+|||||+.+|+.|.=+.
T Consensus 93 KA~~L~~~a~~i~~~~~~l~~~~~~~~~~~L~~lpGIG~kTA~~il~~a 141 (218)
T 1pu6_A 93 KAKRLIDLSGNILKDFQSFENFKQEVTREWLLDQKGIGKESADAILCYA 141 (218)
T ss_dssp HHHHHHHHHHHHHHHHSSHHHHHHHCCHHHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCChhhccchHHHHHHHcCCCcCHHHHHHHHHHH
Confidence 55555566655532 211 11 345779999999999999998654
No 215
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=50.59 E-value=4.5 Score=31.56 Aligned_cols=44 Identities=20% Similarity=0.371 Sum_probs=33.3
Q ss_pred ccCCCHHHHHHHHHhCCCCHHHHhhc--cCcchhhhhcccchhhhc
Q 010406 300 VWGIGPATAQKLYEKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIK 343 (511)
Q Consensus 300 I~GvGpktA~~l~~~Gi~tledL~~~--~~L~~~q~~Glk~~~d~~ 343 (511)
--++.+....-|-+.||.|+.||.+- ..|-++.+||.+..+++.
T Consensus 13 ~L~LS~Ra~NcLkragI~Tv~dL~~~s~~dLlki~n~G~kSl~EI~ 58 (73)
T 1z3e_B 13 ELDLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVK 58 (73)
T ss_dssp GSCCBHHHHHHHHHTTCCBHHHHHTSCHHHHHTSTTCCHHHHHHHH
T ss_pred HhCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHcCCCCHHHHHHHH
Confidence 33677888888888899999999853 347778888888766654
No 216
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=50.46 E-value=6.5 Score=40.10 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=19.6
Q ss_pred cccCCCHHHHHHHHHh-CCCCHHHHhh
Q 010406 299 EVWGIGPATAQKLYEK-GHRTLDDLKN 324 (511)
Q Consensus 299 ~I~GvGpktA~~l~~~-Gi~tledL~~ 324 (511)
+|+|||||||.+|.++ | ||+.+.+
T Consensus 255 GVpGIG~KtA~kLl~~~g--sle~il~ 279 (363)
T 3ory_A 255 GFEGIGPKKALQLVKAYG--GIEKIPK 279 (363)
T ss_dssp CSTTCCHHHHHHHHHHHT--SSTTSCG
T ss_pred CCCCcCHHHHHHHHHHcC--CHHHHHH
Confidence 8899999999999987 5 5665553
No 217
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=50.32 E-value=15 Score=36.90 Aligned_cols=53 Identities=21% Similarity=0.352 Sum_probs=38.8
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhcccCCCHHHHHHHHHh--CCCC
Q 010406 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRT 318 (511)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~--Gi~t 318 (511)
+..|||||+++++++..+ -+..+.+|.+-.+....+.| |+.+..++|+. |+..
T Consensus 181 v~~l~GiG~~~~~~L~~~----Gi~t~~dL~~~~~~~L~~~f------G~~~g~~l~~~a~G~d~ 235 (354)
T 3bq0_A 181 IDEIPGIGSVLARRLNEL----GIQKLRDILSKNYNELEKIT------GKAKALYLLKLAQNKYS 235 (354)
T ss_dssp STTSTTCCHHHHHHHTTT----TCCBGGGGGGSCHHHHHHHH------CHHHHHHHHHHHTTCCC
T ss_pred cccccCcCHHHHHHHHHc----CCccHHHHhcCCHHHHHHHH------CHHHHHHHHHHhCCCCC
Confidence 678899999988876643 35666677665555566677 78878888875 8864
No 218
>3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A*
Probab=49.68 E-value=5.3 Score=42.75 Aligned_cols=27 Identities=11% Similarity=0.452 Sum_probs=23.1
Q ss_pred hcccCCCHHHHHHHHHh-CC---CCHHHHhh
Q 010406 298 GEVWGIGPATAQKLYEK-GH---RTLDDLKN 324 (511)
Q Consensus 298 ~~I~GvGpktA~~l~~~-Gi---~tledL~~ 324 (511)
..|||||++++++|.+. || +|+.+|..
T Consensus 310 ~~l~GIG~~t~~~L~~llGI~~~~ti~~i~~ 340 (520)
T 3mfi_A 310 TSFWTLGGVLGKELIDVLDLPHENSIKHIRE 340 (520)
T ss_dssp GGSTTCSSHHHHHHHHHTTCCSSSHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHhcCCCcccchhhhhh
Confidence 47999999999999999 99 88766553
No 219
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=49.49 E-value=4.9 Score=45.22 Aligned_cols=27 Identities=37% Similarity=0.497 Sum_probs=24.6
Q ss_pred HhcccCCCHHHHHHHHHhCCCCHHHHh
Q 010406 297 FGEVWGIGPATAQKLYEKGHRTLDDLK 323 (511)
Q Consensus 297 f~~I~GvGpktA~~l~~~Gi~tledL~ 323 (511)
++.++|||||+|+.|-+.||.|+.||.
T Consensus 117 ~~~l~gvg~~~~~~l~~lgi~~~~dll 143 (780)
T 1gm5_A 117 IQYAKGVGPNRKKKLKKLGIETLRDLL 143 (780)
T ss_dssp SSSSSSCCHHHHHHHHTTTCCSSGGGT
T ss_pred chhcCCCCHHHHHHHHHCCCCcHHHHH
Confidence 357899999999999888999999997
No 220
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=48.67 E-value=15 Score=37.09 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=18.5
Q ss_pred HHHHHhcccCCCHHHHHHHHHh
Q 010406 293 TISLFGEVWGIGPATAQKLYEK 314 (511)
Q Consensus 293 ~l~lf~~I~GvGpktA~~l~~~ 314 (511)
+++.|++++|||++||..+---
T Consensus 116 ~~~~L~~l~GIG~~tA~~il~~ 137 (369)
T 3fsp_A 116 DPDEFSRLKGVGPYTVGAVLSL 137 (369)
T ss_dssp SHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHhcCCCcCHHHHHHHHHH
Confidence 5677789999999999987654
No 221
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=48.54 E-value=19 Score=35.40 Aligned_cols=50 Identities=18% Similarity=0.231 Sum_probs=33.6
Q ss_pred CCChhHHHHHHHHHHHhcCCcccc---------chhhhcCCCCCCHHHHHHHHHHHHhCC
Q 010406 228 GEDRRSFSYYKAIPVIEKLPFKIE---------SADQVKGLPGIGKSMQDHIQEIVTTGK 278 (511)
Q Consensus 228 g~~~r~~aY~rAa~~l~~l~~~i~---------s~~~l~~lpgIG~~ia~kI~Eil~tG~ 278 (511)
|-.+|+..-..+|..+..-...+. ..++|..|||||+.+|+.|.=+ .-|.
T Consensus 176 g~g~Ra~~I~~~A~~i~~g~~~l~~l~~~~~~~~~~~L~~lpGIG~~TA~~ill~-~lg~ 234 (290)
T 3i0w_A 176 TAGFRAKYLKDTVDRIYNGELNLEYIKSLNDNECHEELKKFMGVGPQVADCIMLF-SMQK 234 (290)
T ss_dssp TCGGGHHHHHHHHHHHHTTSSCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHH-HHCC
T ss_pred CCchHHHHHHHHHHHHHhCCCCHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHH-hCCC
Confidence 444577777777777764322221 2367999999999999999844 3444
No 222
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=48.16 E-value=15 Score=37.23 Aligned_cols=53 Identities=21% Similarity=0.342 Sum_probs=39.8
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhcccCCCHHHHHHHHHh--CCCC
Q 010406 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRT 318 (511)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~--Gi~t 318 (511)
+..|||||+++++++..+ -+..+.+|.+-.+....+.| |++...+||+. |+..
T Consensus 181 v~~l~GiG~~~~~~L~~~----GI~Ti~dL~~~~~~~L~~~f------G~~~g~~l~~~a~G~d~ 235 (362)
T 4f4y_A 181 IDEIPGIGSVLARRLNEL----GIQKLRDILSKNYNELEKIT------GKAKALYLLKLAQDEYN 235 (362)
T ss_dssp STTSTTCCSTTHHHHHHT----TCCBGGGGTTSCHHHHHHHH------CHHHHHHHHHHHTTCCC
T ss_pred hhhccCCCHHHHHHHHHc----CCChHHHHhcCCHHHHHHHh------ChHHHHHHHHHhcCCCC
Confidence 678999999999988764 35556666665555566777 88899999974 8864
No 223
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=48.07 E-value=18 Score=35.23 Aligned_cols=53 Identities=21% Similarity=0.265 Sum_probs=35.7
Q ss_pred HHcCC-ChhHHHHHHHHHHHhc--CCccc-cc----hhhhcCCCCCCHHHHHHHHHHHHhCC
Q 010406 225 RALGE-DRRSFSYYKAIPVIEK--LPFKI-ES----ADQVKGLPGIGKSMQDHIQEIVTTGK 278 (511)
Q Consensus 225 e~~g~-~~r~~aY~rAa~~l~~--l~~~i-~s----~~~l~~lpgIG~~ia~kI~Eil~tG~ 278 (511)
.-.|- ..|+..-.++|..+.. ++... .+ .++|..|||||+.+|+.|.-+. -|.
T Consensus 170 r~~G~~~~ra~~i~~~A~~~~~~~~~~~~~~~~~~~~~~L~~lpGIG~~TA~~ill~~-lg~ 230 (282)
T 1mpg_A 170 KALGMPLKRAEALIHLANAALEGTLPMTIPGDVEQAMKTLQTFPGIGRWTANYFALRG-WQA 230 (282)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHHTCSCSSCCSCHHHHHHHHTTSTTCCHHHHHHHHHHH-SCC
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCCCccccCCHHHHHHHHhcCCCcCHHHHHHHHHHh-CCC
Confidence 33455 3477777888877764 33222 12 4679999999999999987543 444
No 224
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=47.91 E-value=11 Score=35.93 Aligned_cols=21 Identities=14% Similarity=0.366 Sum_probs=18.2
Q ss_pred hhhhcCCCCCCHHHHHHHHHH
Q 010406 253 ADQVKGLPGIGKSMQDHIQEI 273 (511)
Q Consensus 253 ~~~l~~lpgIG~~ia~kI~Ei 273 (511)
.++|..|||||..+|+.|.-+
T Consensus 137 ~~~L~~lpGIG~kTA~~ill~ 157 (233)
T 2h56_A 137 IEKLTAIKGIGQWTAEMFMMF 157 (233)
T ss_dssp HHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHhCCCcCHHHHHHHHHH
Confidence 467999999999999998754
No 225
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=47.72 E-value=5.6 Score=34.42 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=20.9
Q ss_pred HHHHHhcccCCCHHHHHHHHHh-CCC
Q 010406 293 TISLFGEVWGIGPATAQKLYEK-GHR 317 (511)
Q Consensus 293 ~l~lf~~I~GvGpktA~~l~~~-Gi~ 317 (511)
+.--|+.|+|||+.+|..+.+. ||.
T Consensus 15 v~~aLt~I~GIG~~~A~~I~~~~gi~ 40 (126)
T 2vqe_M 15 VDVALTYIYGIGKARAKEALEKTGIN 40 (126)
T ss_dssp HHHHHTTSSSCCSHHHHHHTTTTTCC
T ss_pred eeeehhccccccHHHHHHHHHHcCCC
Confidence 4556789999999999999876 774
No 226
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=47.71 E-value=15 Score=34.99 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHhc--CC--ccc------cchhhhcCCCCCCHHHHHHHHHH
Q 010406 232 RSFSYYKAIPVIEK--LP--FKI------ESADQVKGLPGIGKSMQDHIQEI 273 (511)
Q Consensus 232 r~~aY~rAa~~l~~--l~--~~i------~s~~~l~~lpgIG~~ia~kI~Ei 273 (511)
|+..-..+|..+.. +| ..+ +..++|..|||||..+|+.|.=+
T Consensus 118 Ka~~l~~~A~~~~~g~~p~l~~l~~~~~~~~~~~L~~l~GIG~~TA~~ill~ 169 (232)
T 4b21_A 118 KSQEIHIVAEAALNKQIPSKSEIEKMSEEELMESLSKIKGVKRWTIEMYSIF 169 (232)
T ss_dssp HHHHHHHHHHHHHTTCSCCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHcCCHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 45555556666654 22 001 23467999999999999988744
No 227
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=47.25 E-value=13 Score=33.26 Aligned_cols=25 Identities=20% Similarity=0.120 Sum_probs=21.1
Q ss_pred HHHHHhcccCCCHHHHHHHHHh-CCC
Q 010406 293 TISLFGEVWGIGPATAQKLYEK-GHR 317 (511)
Q Consensus 293 ~l~lf~~I~GvGpktA~~l~~~-Gi~ 317 (511)
+.--|+.|+|||..+|..+.+. ||.
T Consensus 28 v~~aLt~I~GIG~~~A~~I~~~~gid 53 (155)
T 2xzm_M 28 TPIALTGIRGIGRRFAYIICKVLKID 53 (155)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHTTCC
T ss_pred EEEeeecccccCHHHHHHHHHHcCCC
Confidence 5556789999999999999876 764
No 228
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=46.18 E-value=18 Score=37.59 Aligned_cols=56 Identities=18% Similarity=0.268 Sum_probs=38.9
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhh-chhHHHHHHhcccCCCHHHHHHHHHh--CCCCH
Q 010406 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKD-EKVRTISLFGEVWGIGPATAQKLYEK--GHRTL 319 (511)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~-~~~~~l~lf~~I~GvGpktA~~l~~~--Gi~tl 319 (511)
+..|||||+++++++..-+ .-+..+.+|.+- .+....+.| |++...++|+. |+..-
T Consensus 243 v~~l~GiG~~~~~~L~~~~--~GI~ti~dL~~~~~~~~L~~~f------G~~~g~~l~~~a~G~d~~ 301 (434)
T 2aq4_A 243 LDDLPGVGHSTLSRLESTF--DSPHSLNDLRKRYTLDALKASV------GSKLGMKIHLALQGQDDE 301 (434)
T ss_dssp GGGSTTCCHHHHHHHHHHT--TCCCSHHHHHHHCCHHHHHHHH------CSSHHHHHHHHTTTCCCH
T ss_pred cccccCcCHHHHHHHHHhc--CCceEHHHHHhcCCHHHHHHHh------CHHHHHHHHHHhcCCCcc
Confidence 6789999999999888721 124555666654 455556666 67778888875 98763
No 229
>3ci0_K Pseudopilin GSPK; general secretory pathway, pseudopilus, type 4 pilin biogene methylation, protein transport; 2.20A {Escherichia coli} SCOP: a.60.16.1 a.60.16.1 d.24.1.6
Probab=45.87 E-value=5.1 Score=39.62 Aligned_cols=76 Identities=9% Similarity=0.253 Sum_probs=44.4
Q ss_pred cccchhhhcCCCCCCHHHHHHHHHHHHhCCch-hhHHHHhhchhHHHHHHhcc--cCCCHHHHHHHHHh----CCCCHHH
Q 010406 249 KIESADQVKGLPGIGKSMQDHIQEIVTTGKLS-KLEHFEKDEKVRTISLFGEV--WGIGPATAQKLYEK----GHRTLDD 321 (511)
Q Consensus 249 ~i~s~~~l~~lpgIG~~ia~kI~Eil~tG~~~-~le~l~~~~~~~~l~lf~~I--~GvGpktA~~l~~~----Gi~tled 321 (511)
++.+.+||..|+|+...+-.++..++.---.. ..-.+..-.+.. ..+|..+ +|||+..|+++.+. |+.+++|
T Consensus 153 ~~~~~~EL~~v~G~~~~~~~~l~p~vtv~p~~~~~iNiNTa~~~~-a~vL~al~~~~i~~~~A~~ii~~R~~~gf~~v~~ 231 (298)
T 3ci0_K 153 PLADISEMRVVQGMDAGLYQKLKPLVCALPMTRQQININTLDVTQ-SVILEALFDPWLSPVQARALLQQRPAKGWEDVDQ 231 (298)
T ss_dssp CCSSGGGGGGSTTCCHHHHHHHTTTEECCSCSSCCEETTTCCGGG-THHHHHHTC-------CCHHHHTCCTTCCSCHHH
T ss_pred CCCCHHHHHhccCCCHHHHHhhcCeEEEecCCCcceeccccChhh-HHHHHHhcCCCCCHHHHHHHHHhcccCCCCCHHH
Confidence 57888999999999999999998887542100 000111111111 2233345 89999999999973 8999999
Q ss_pred Hhhc
Q 010406 322 LKNE 325 (511)
Q Consensus 322 L~~~ 325 (511)
+.+.
T Consensus 232 ~~~~ 235 (298)
T 3ci0_K 232 FLAQ 235 (298)
T ss_dssp HHTS
T ss_pred HHhh
Confidence 9853
No 230
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=45.31 E-value=7.5 Score=30.81 Aligned_cols=43 Identities=21% Similarity=0.394 Sum_probs=33.4
Q ss_pred cCCCHHHHHHHHHhCCCCHHHHhhc--cCcchhhhhcccchhhhc
Q 010406 301 WGIGPATAQKLYEKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIK 343 (511)
Q Consensus 301 ~GvGpktA~~l~~~Gi~tledL~~~--~~L~~~q~~Glk~~~d~~ 343 (511)
-++.+....-|-+.||.|+.||..- ..|..+.+||-+..++|.
T Consensus 21 L~LS~Ra~NcLk~agI~Tv~dL~~~se~dLlki~n~G~kSl~EI~ 65 (79)
T 3gfk_B 21 LDLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVK 65 (79)
T ss_dssp SCCBHHHHHHHHHTTCCBHHHHTTCCHHHHTTSTTCHHHHHHHHH
T ss_pred hCCCHHHHHHHHHhCCCCHHHHHhCCHHHHHHcCCCCHhHHHHHH
Confidence 3677888888888899999999853 357778888888776654
No 231
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=44.97 E-value=8.5 Score=31.03 Aligned_cols=42 Identities=19% Similarity=0.240 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHhCCCCHHHHhhc--cCcchhhhhcccchhhhc
Q 010406 302 GIGPATAQKLYEKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIK 343 (511)
Q Consensus 302 GvGpktA~~l~~~Gi~tledL~~~--~~L~~~q~~Glk~~~d~~ 343 (511)
++.++...-|-+.||.|+.||..- ..|-+..+||-+..++|.
T Consensus 18 ~LSvRa~NcLkragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~ 61 (86)
T 3k4g_A 18 ELTVRSANCLXAEAIHYIGDLVQRTEVELLXTPNLGXXSLTEIX 61 (86)
T ss_dssp CCCHHHHHHHHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCcHHHHHhCCHHHHhhccccCcccHHHHH
Confidence 677888888888899999999853 347777888887766543
No 232
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=44.84 E-value=10 Score=37.27 Aligned_cols=29 Identities=31% Similarity=0.526 Sum_probs=25.6
Q ss_pred HhcccCCCHHHHHHHHHhCCCCHHHHhhc
Q 010406 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (511)
Q Consensus 297 f~~I~GvGpktA~~l~~~Gi~tledL~~~ 325 (511)
+..++||++..+++|-+.||.|++||...
T Consensus 5 ~~~l~gi~~~~~~kL~~~gi~t~~~~~~~ 33 (322)
T 2i1q_A 5 LTDLPGVGPSTAEKLVEAGYIDFMKIATA 33 (322)
T ss_dssp CTTSTTCCHHHHHHHHHHTCCSHHHHHTC
T ss_pred HhhcCCCCHHHHHHHHHcCCCcHHHHHhC
Confidence 34788999999999999999999999753
No 233
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=44.42 E-value=25 Score=36.01 Aligned_cols=36 Identities=17% Similarity=0.112 Sum_probs=28.7
Q ss_pred HhhhcCCCeEEEEccceeecCCc-cCCeeEEEecCCc
Q 010406 361 AGEEVLPEVIILCGGSYRRGKAS-CGDLDVVIMHPDR 396 (511)
Q Consensus 361 ~~~~~~p~~~v~~~Gs~RRgke~-~gDvDiLit~~~~ 396 (511)
+.....|++.|.+-||+.-|.-. .+|||+.|..++.
T Consensus 38 ii~~~~p~~~v~~FGS~~tgl~lp~SDiDlvI~~~~~ 74 (384)
T 3hj4_A 38 IGMLAVNKAHVELFGSHVSGFCTPHSDADISLTYRNF 74 (384)
T ss_dssp HHHHHSTTCEEEEESHHHHSCCCTTCCEEEEEECTTC
T ss_pred HHHHHCCCcEEEEeeeccCCCCCCCCCeeEEEecCCC
Confidence 33345799999999999998765 6899999987653
No 234
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=43.66 E-value=15 Score=36.12 Aligned_cols=59 Identities=20% Similarity=0.336 Sum_probs=39.2
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhh--chhHHHHHHhccc-C-----CCHHHHHHHHHh
Q 010406 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKD--EKVRTISLFGEVW-G-----IGPATAQKLYEK 314 (511)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~--~~~~~l~lf~~I~-G-----vGpktA~~l~~~ 314 (511)
.+|..||||+...|..|.+- -++...|-....+ .+....+||.++. | |||..++++|+-
T Consensus 237 ~mL~~IpGVs~~~A~~I~~~--ypTp~~L~~Ay~~~~~~~e~~~lL~~i~~g~~~r~IG~~lS~kI~~~ 303 (311)
T 2ziu_A 237 RQLMQISGVSGDKAAAVLEH--YSTVSSLLQAYDKCSSETEKEKLLSSVKYGKLKRNLGPALSRTIYQL 303 (311)
T ss_dssp HHHTTBTTCCHHHHHHHHHH--CSSHHHHHHHHHHCSSHHHHTTTTTTCEETTTTEECHHHHHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHH--CCCHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCcCHHHHHHHHHH
Confidence 57999999999999988763 4455554332211 1222333565663 4 999999999974
No 235
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=42.01 E-value=11 Score=33.91 Aligned_cols=19 Identities=21% Similarity=0.121 Sum_probs=15.5
Q ss_pred HHHHhcccCCCHHHHHHHH
Q 010406 294 ISLFGEVWGIGPATAQKLY 312 (511)
Q Consensus 294 l~lf~~I~GvGpktA~~l~ 312 (511)
.+.++++||||+.||..+-
T Consensus 103 ~~~L~~LpGVG~yTAdav~ 121 (161)
T 4e9f_A 103 WKYPIELHGIGKYGNDSYR 121 (161)
T ss_dssp CSSGGGSTTCCHHHHHHHH
T ss_pred hhhhhcCCCchHHHHHHHH
Confidence 4456799999999999863
No 236
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=41.74 E-value=14 Score=28.55 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=16.4
Q ss_pred HHHHHHHHHhCCCCHHHHh
Q 010406 305 PATAQKLYEKGHRTLDDLK 323 (511)
Q Consensus 305 pktA~~l~~~Gi~tledL~ 323 (511)
-+.+..|.+.||+|++|++
T Consensus 59 ~~Il~~W~~~gi~T~e~a~ 77 (78)
T 2zc2_A 59 QAILRNWRHEGISTLRQVE 77 (78)
T ss_dssp HHHHHHHHHTTCCSHHHHC
T ss_pred HHHHHHHHHcCCCCHHHHh
Confidence 4668999999999999975
No 237
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=41.40 E-value=27 Score=36.44 Aligned_cols=30 Identities=30% Similarity=0.388 Sum_probs=24.6
Q ss_pred eEEEEccceeecCCcc--CCeeEEEecCCcch
Q 010406 369 VIILCGGSYRRGKASC--GDLDVVIMHPDRKS 398 (511)
Q Consensus 369 ~~v~~~Gs~RRgke~~--gDvDiLit~~~~~~ 398 (511)
+.+..+|||.||--.- +||||.|.-|....
T Consensus 40 ~~v~~~GS~AkgT~Lrg~sDIDIfv~f~~~~~ 71 (437)
T 1r89_A 40 VEYVFVGSYARNTWLKGSLEIDVFLLFPEEFS 71 (437)
T ss_dssp CCEEEEHHHHHTCCCTTCCEEEEEEEECTTSC
T ss_pred CeEEEeccccCCCcCCCCCCceEEEEcCCCCC
Confidence 6888999999998887 58999998776543
No 238
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=41.23 E-value=25 Score=33.10 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHhcCCcccc---------chhhhcCCCCCCHHHHHHHHHH
Q 010406 232 RSFSYYKAIPVIEKLPFKIE---------SADQVKGLPGIGKSMQDHIQEI 273 (511)
Q Consensus 232 r~~aY~rAa~~l~~l~~~i~---------s~~~l~~lpgIG~~ia~kI~Ei 273 (511)
|+..-..++..+..=...+. ..++|..|||||..+|+.|.=+
T Consensus 115 KA~~i~~lA~~~~~g~~~l~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~ 165 (225)
T 2yg9_A 115 KVRTVQAAAAAAVSGQIDFAHLSGQPDELVIAELVQLPGIGRWTAEMFLLF 165 (225)
T ss_dssp HHHHHHHHHHHHHTTSSCGGGCTTSCHHHHHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcCHHHHhcCCHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 55555666666654111111 1367999999999999988744
No 239
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=38.84 E-value=26 Score=28.82 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=20.8
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHh
Q 010406 254 DQVKGLPGIGKSMQDHIQEIVTT 276 (511)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~t 276 (511)
+++.+++|+|++..+.|.+.|+.
T Consensus 56 ~dLlki~n~G~KSl~EI~~~L~~ 78 (98)
T 1coo_A 56 VELLKTPNLGKKSLTEIKDVLAS 78 (98)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999964
No 240
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=38.12 E-value=26 Score=33.06 Aligned_cols=46 Identities=15% Similarity=0.204 Sum_probs=29.1
Q ss_pred CCCh-hHHHHHHHHHHHhc--CCc--cccc------hhhhcCCCCCCHHHHHHHHHH
Q 010406 228 GEDR-RSFSYYKAIPVIEK--LPF--KIES------ADQVKGLPGIGKSMQDHIQEI 273 (511)
Q Consensus 228 g~~~-r~~aY~rAa~~l~~--l~~--~i~s------~~~l~~lpgIG~~ia~kI~Ei 273 (511)
|-.. |+..-..+|..+.. +|. .+.. .++|..|||||..+|+.|.-+
T Consensus 102 G~~~rKa~~i~~~A~~~~~g~~p~~~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~ 158 (228)
T 3s6i_A 102 GFSARKIDSLKSIAEATISGLIPTKEEAERLSNEELIERLTQIKGIGRWTVEMLLIF 158 (228)
T ss_dssp TCCHHHHHHHHHHHHHHHHTSSCCHHHHTTSCHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCCChHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 4443 45555666666653 221 1111 467999999999999988744
No 241
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=36.95 E-value=48 Score=32.14 Aligned_cols=66 Identities=23% Similarity=0.436 Sum_probs=36.1
Q ss_pred HHHHHHhCCchhhHHHHhhchhHHHHHHhcccCCCHHHHHHHHHh-CC-CCHHHHhhcc---Ccchhhhhccc
Q 010406 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GH-RTLDDLKNED---SLTHSQRLGLK 337 (511)
Q Consensus 270 I~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~-Gi-~tledL~~~~---~L~~~q~~Glk 337 (511)
|+-..+.|++++ |..+..... .+..+++--|||.|||.+|... |- .-+.+|-++- +|+...+.|-+
T Consensus 388 iermyeegrlse-eayraavei-qlaeltkkegvgrktaerllrafgnpervkqlarefeieklasvegvger 458 (519)
T 2csb_A 388 IERMYEEGRLSE-EAYRAAVEI-QLAELTKKEGVGRKTAERLLRAFGNPERVKQLAREFEIEKLASVEGVGER 458 (519)
T ss_dssp HHHHHHHTSSCH-HHHHHHHHH-HHHHHHTSTTCCHHHHHHHHHHHSSHHHHHHHHHTTCHHHHHTSTTCSHH
T ss_pred HHHHHHcccccH-HHHHHHHHH-HHHHHhhhcccchhHHHHHHHHhCCHHHHHHHHHHHhHHHHhhccchHHH
Confidence 333444555554 223332222 2445679999999999999886 53 3333343322 34455555533
No 242
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=36.64 E-value=41 Score=35.01 Aligned_cols=52 Identities=15% Similarity=0.330 Sum_probs=35.5
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhcccCCCHHHHHHHHHh--CCCC
Q 010406 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRT 318 (511)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~--Gi~t 318 (511)
+..|||||+.+++++..+ | +..+.+|... +....+.| |++++..||+. |+..
T Consensus 284 v~~l~GiG~~~~~~L~~l---G-I~T~gdL~~~-~~~L~~~f------G~~~~~~l~~~a~G~d~ 337 (459)
T 1t94_A 284 IRKVSGIGKVTEKMLKAL---G-IITCTELYQQ-RALLSLLF------SETSWHYFLHISLGLGS 337 (459)
T ss_dssp GGGCTTSCHHHHHHHHHT---T-CCBHHHHHHT-HHHHHHHS------CHHHHHHHHHHHTTCCC
T ss_pred HHhcCCcCHHHHHHHHHc---C-CCcHHHHHhh-HHHHHHHh------ChHhHHHHHHHHcCCCC
Confidence 678999999998887653 3 4455555543 33344455 78888989875 8854
No 243
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=35.99 E-value=20 Score=33.66 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=17.9
Q ss_pred hhhhc-CCCCCCHHHHHHHHHH
Q 010406 253 ADQVK-GLPGIGKSMQDHIQEI 273 (511)
Q Consensus 253 ~~~l~-~lpgIG~~ia~kI~Ei 273 (511)
.++|. +|||||.++|+.|--+
T Consensus 123 re~Ll~~LpGVG~KTA~~vL~~ 144 (214)
T 3fhf_A 123 REFLVRNIKGIGYKEASHFLRN 144 (214)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHH
Confidence 46788 9999999999998654
No 244
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=34.38 E-value=1.9e+02 Score=31.31 Aligned_cols=49 Identities=14% Similarity=0.301 Sum_probs=36.8
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhcccCCCHHHHHHHHH
Q 010406 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (511)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~ 313 (511)
-.|.+|||||...|.++. +.| +..++++. ..+....+++ |++.++++++
T Consensus 657 ~~L~qlp~i~~~rar~L~---~~g-~~s~~~l~-~~~~~l~~~l------~~~~~~~i~~ 705 (715)
T 2va8_A 657 LELVQISGVGRKRARLLY---NNG-IKELGDVV-MNPDKVKNLL------GQKLGEKVVQ 705 (715)
T ss_dssp HHHHTSTTCCHHHHHHHH---HTT-CCSHHHHH-HCHHHHHHHH------CHHHHHHHHH
T ss_pred cchhhCCCCCHHHHHHHH---HcC-CCCHHHHh-CCHHHHHHHh------ChhHHHHHHH
Confidence 458899999999999875 555 47778887 6666677776 4777777765
No 245
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=34.16 E-value=14 Score=34.83 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=17.7
Q ss_pred hhhhc-CCCCCCHHHHHHHHHH
Q 010406 253 ADQVK-GLPGIGKSMQDHIQEI 273 (511)
Q Consensus 253 ~~~l~-~lpgIG~~ia~kI~Ei 273 (511)
.++|. +|||||..+|+.|--+
T Consensus 128 r~~L~~~l~GVG~kTA~~vL~~ 149 (219)
T 3n0u_A 128 REFLVRNAKGIGWKEASHFLRN 149 (219)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHT
T ss_pred HHHHHHhCCCCCHHHHHHHHHH
Confidence 36788 9999999999998644
No 246
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=33.18 E-value=20 Score=29.02 Aligned_cols=57 Identities=16% Similarity=0.246 Sum_probs=32.8
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHH-----HhhchhHHHHHHhcccCCCHHHHHHHHH
Q 010406 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF-----EKDEKVRTISLFGEVWGIGPATAQKLYE 313 (511)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l-----~~~~~~~~l~lf~~I~GvGpktA~~l~~ 313 (511)
.++..|||||+..+.++.| .|--.-+.-| .......-.+-|..+-|+-.|-|..-|+
T Consensus 18 K~V~evpGIG~~~~~~L~~---~Gf~kAy~lLGqFL~l~kd~~~F~~WLk~~~gan~kq~~dc~~ 79 (89)
T 1ci4_A 18 KPVGSLAGIGEVLGKKLEE---RGFDKAYVVLGQFLVLKKDEDLFREWLKDTCGANAKQSRDCFG 79 (89)
T ss_dssp CCGGGSTTCCHHHHHHHHH---TTCCSHHHHHHHHHHTTTCHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred CCcccCCCcCHHHHHHHHH---cCccHHHHHHHHHHHcCCCHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 3589999999999999887 4433222211 1111122233344555777777766554
No 247
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=32.87 E-value=3e+02 Score=26.83 Aligned_cols=52 Identities=4% Similarity=0.143 Sum_probs=32.4
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhcccCCCHHHHHHHHH
Q 010406 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (511)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~ 313 (511)
..|..|||||..+++++. +. .+..+++|..-.+...-+++ |+++..++.+++
T Consensus 157 ~pL~Qlp~i~~~~~~~l~---~~-~i~s~~~l~~~~~~e~~~ll----~~~~~~~~~v~~ 208 (328)
T 3im1_A 157 NPLRQIPHFNNKILEKCK---EI-NVETVYDIMALEDEERDEIL----TLTDSQLAQVAA 208 (328)
T ss_dssp CGGGGSTTCCHHHHHHHH---HT-TCCSHHHHHHSCHHHHHHHC----CCCHHHHHHHHH
T ss_pred CceeCCCCCCHHHHHHHH---hC-CCCCHHHHhcCCHHHHHhHh----CCCHHHHHHHHH
Confidence 458899999999988865 33 34556666543343333333 677766666644
No 248
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=31.77 E-value=9.9 Score=41.06 Aligned_cols=47 Identities=23% Similarity=0.333 Sum_probs=9.9
Q ss_pred cccCCCHHHHHHHHHh-CCCCHHHHhhcc-CcchhhhhcccchhhhccC
Q 010406 299 EVWGIGPATAQKLYEK-GHRTLDDLKNED-SLTHSQRLGLKYFDDIKTR 345 (511)
Q Consensus 299 ~I~GvGpktA~~l~~~-Gi~tledL~~~~-~L~~~q~~Glk~~~d~~~~ 345 (511)
+=+||+++.|.++|+. |-.+++-|+++. +|....++|++..+.|..+
T Consensus 15 ~~~g~~~~~a~~i~~~yg~~~~~~i~~nPy~l~~i~gigf~~aD~ia~~ 63 (574)
T 3e1s_A 15 QGLGLTINQAQRAVKHFGADALDRLEKDLFTLTEVEGIGFLTADKLWQA 63 (574)
T ss_dssp -----------------------------CGGGTSSSCCHHHHHTTC--
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHhCCcccCCcCCCCHHHHHHHHHH
Confidence 6666666666666666 666666666442 4544556666666665543
No 249
>3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A*
Probab=30.73 E-value=20 Score=38.23 Aligned_cols=59 Identities=8% Similarity=0.091 Sum_probs=35.4
Q ss_pred hcCCCCCCHHHHHHHHHHHHh------CCchh-----hHHHHhhchhHHHHHHhcccCCC----------HHHHHHHHHh
Q 010406 256 VKGLPGIGKSMQDHIQEIVTT------GKLSK-----LEHFEKDEKVRTISLFGEVWGIG----------PATAQKLYEK 314 (511)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~t------G~~~~-----le~l~~~~~~~~l~lf~~I~GvG----------pktA~~l~~~ 314 (511)
+..|+|||+++++++..++-- |.+.. +.+|..-. ...|.+.+|-+ .+++.++|+.
T Consensus 309 V~~l~GIG~~t~~~L~~llGI~~~~ti~~i~~l~~~t~~dL~~~~----~~~L~~~fG~~~~~~~d~~~~g~~g~~L~~~ 384 (520)
T 3mfi_A 309 ITSFWTLGGVLGKELIDVLDLPHENSIKHIRETWPDNAGQLKEFL----DAKVKQSDYDRSTSNIDPLKTADLAEKLFKL 384 (520)
T ss_dssp GGGSTTCSSHHHHHHHHHTTCCSSSHHHHHHHHSCSCHHHHHHHH----HHHHHSTTCC---CCCCTTCHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHhcCCCcccchhhhhhccCCCHHHHHhcC----HHHHHHhcCccccccccchhhhHHHHHHHHH
Confidence 567899999999999988421 22222 13333211 23344555531 2788999885
Q ss_pred --CCCC
Q 010406 315 --GHRT 318 (511)
Q Consensus 315 --Gi~t 318 (511)
|+..
T Consensus 385 arGid~ 390 (520)
T 3mfi_A 385 SRGRYG 390 (520)
T ss_dssp TTTCCC
T ss_pred hCCCCC
Confidence 8864
No 250
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=30.64 E-value=61 Score=33.49 Aligned_cols=54 Identities=19% Similarity=0.372 Sum_probs=35.2
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhcccCCCHHHHHHHHHh--CCCC
Q 010406 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRT 318 (511)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~--Gi~t 318 (511)
+..|+|||.++..++.+-+ | +..+.+|.+-.+..+.+.| |++++.+||+. |+..
T Consensus 255 v~~l~GiG~~~~~~lL~~l--G-I~TigdLa~~~~~~L~~~f------G~~~g~~L~~~a~G~d~ 310 (435)
T 4ecq_A 255 IRKIRSLGGKLGASVIEIL--G-IEYMGELTQFTESQLQSHF------GEKNGSWLYAMCRGIEH 310 (435)
T ss_dssp GGGSTTCSSHHHHHHHHHH--T-CCBGGGGGGSCHHHHHHHH------CHHHHHHHHHHTTTCCC
T ss_pred HHHhcCCCHHHHHHHHHHc--C-CCcHHHHhhCCHHHHHHHh------CccHHHHHHHHhhCCCC
Confidence 6788999999877643322 2 3444455544444455566 68899999974 8763
No 251
>3pkr_A FLIG, flagellar motor switch protein; FLIF, FLIM, MOTA, motor prote; 2.60A {Helicobacter pylori} PDB: 3usw_A 3pl4_A 3usy_A
Probab=30.22 E-value=82 Score=30.71 Aligned_cols=96 Identities=10% Similarity=0.198 Sum_probs=63.3
Q ss_pred cCCChhHHH-------HHHHHHHHhcCCccccc--hhhhcCCCCCCHHHHHHHHHHHHh------------CCchhhHHH
Q 010406 227 LGEDRRSFS-------YYKAIPVIEKLPFKIES--ADQVKGLPGIGKSMQDHIQEIVTT------------GKLSKLEHF 285 (511)
Q Consensus 227 ~g~~~r~~a-------Y~rAa~~l~~l~~~i~s--~~~l~~lpgIG~~ia~kI~Eil~t------------G~~~~le~l 285 (511)
.++.+...| -.+||.+|..||..+.. +..+..+.+|-+.+.+.|.+.|+. |-...+-++
T Consensus 71 ~~EhPQtiAlILs~L~~~~AA~VL~~Lp~~~r~dV~~Ria~l~~v~p~~l~~le~~L~~~l~~~~~~~~~~gG~~~vA~I 150 (279)
T 3pkr_A 71 INEHPQTIALILAHMEAPNAAETLSYFPDEMKAEISIRMANLGEISPQVVKRVSTVLENKLESLTSYKIEVGGLRAVAEI 150 (279)
T ss_dssp TTSCHHHHHHHHHTSCHHHHHHHHTTSCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHTCC---CCCCSHHHHHHH
T ss_pred HhcCHHHHHHHHHcCCHHHHHHHHHHCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhccccccccCcHHHHHHH
Confidence 355554443 46899999999998765 356788888899999999888864 223445555
Q ss_pred HhhchhHHH-HHHhcccCCCHHHHHHHHHhCCCCHHHHh
Q 010406 286 EKDEKVRTI-SLFGEVWGIGPATAQKLYEKGHRTLDDLK 323 (511)
Q Consensus 286 ~~~~~~~~l-~lf~~I~GvGpktA~~l~~~Gi~tledL~ 323 (511)
.|......- .+|..+--.-|..|.++ +.-+=+++||.
T Consensus 151 LN~~d~~~e~~iL~~L~~~dpelAe~I-r~~MF~FeDl~ 188 (279)
T 3pkr_A 151 FNRLGQKSAKTTLARIESVDNKLAGAI-KEMMFTFEDIV 188 (279)
T ss_dssp HHTSCHHHHHHHHHHHHTTCHHHHHHH-HTTSCCGGGGG
T ss_pred HHcCChHHHHHHHHHHHhhCHHHHHHH-HHhccCHHHHh
Confidence 554444433 35556666677777776 33445566654
No 252
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=28.91 E-value=12 Score=37.03 Aligned_cols=47 Identities=23% Similarity=0.317 Sum_probs=0.0
Q ss_pred HhcccCCCHHHHHHHHHhCCCCHHHHhhcc--Ccchhhhhcccchhhhc
Q 010406 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDIK 343 (511)
Q Consensus 297 f~~I~GvGpktA~~l~~~Gi~tledL~~~~--~L~~~q~~Glk~~~d~~ 343 (511)
+..++||++.++++|-+.||.|++++.... .|....++.....+++.
T Consensus 14 ~~~l~g~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~g~s~~~~~~~~ 62 (324)
T 2z43_A 14 INDLPGISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKII 62 (324)
T ss_dssp -------------------------------------------------
T ss_pred HHHcCCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHhhCCCHHHHHHHH
Confidence 446779999999999999999999998542 35555555444444443
No 253
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=28.17 E-value=57 Score=34.25 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=28.7
Q ss_pred HHHHHhhhcCCCeEEEEccceeecCCc-cCCeeEEEecCC
Q 010406 357 LLQKAGEEVLPEVIILCGGSYRRGKAS-CGDLDVVIMHPD 395 (511)
Q Consensus 357 iv~~~~~~~~p~~~v~~~Gs~RRgke~-~gDvDiLit~~~ 395 (511)
.|+++.....|+++|.+-||+.=|--. .+|||++|..++
T Consensus 161 ~le~ii~~~fP~a~V~~FGS~~tGL~lp~SDIDlvl~~~~ 200 (464)
T 3pq1_A 161 LIEDMAAAYFPDCIVRPFGSSVNTFGKLGCDLDMFLDLDE 200 (464)
T ss_dssp HHHHHHTTTSTTCEEEEEGGGTSSCCBTTCCEEEEEECC-
T ss_pred HHHHHHHHHCCCCEEEEeCCCccCCCCCCCCeEEEEecCC
Confidence 344455556899999999999876554 589999986543
No 254
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=26.74 E-value=37 Score=27.15 Aligned_cols=20 Identities=15% Similarity=-0.084 Sum_probs=16.4
Q ss_pred HHHHhcccCCCHHHHHHHHH
Q 010406 294 ISLFGEVWGIGPATAQKLYE 313 (511)
Q Consensus 294 l~lf~~I~GvGpktA~~l~~ 313 (511)
-.....++|||++++++|-+
T Consensus 57 ~~e~~~L~giG~ki~~~L~e 76 (87)
T 2kp7_A 57 GKEAKILQHFGDRLCRMLDE 76 (87)
T ss_dssp HHHHHTCTTTCHHHHHHHHH
T ss_pred HHHHHHhhcccHHHHHHHHH
Confidence 44556999999999999865
No 255
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=25.88 E-value=1.1e+02 Score=24.25 Aligned_cols=51 Identities=24% Similarity=0.248 Sum_probs=35.5
Q ss_pred ccCCCHHHHHHHHHhCCCCHHHHhhccCcchhhhhcccchhhhccCcCHHHHHHHHHHHHH
Q 010406 300 VWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQK 360 (511)
Q Consensus 300 I~GvGpktA~~l~~~Gi~tledL~~~~~L~~~q~~Glk~~~d~~~~i~r~ea~~~~~iv~~ 360 (511)
+||+-+-.++.|-+.||+|.+|+.....+.-++..|+ ++.++.++...+.+
T Consensus 9 ~p~Lse~~~~~L~~~~I~Tv~Dfl~~d~~eL~~~~~l----------s~~~v~~l~r~l~~ 59 (83)
T 2kz3_A 9 CPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGL----------SYKALVALRRVLLA 59 (83)
T ss_dssp STTCCHHHHHHHHHTTCCCHHHHTTSCHHHHHHHHTC----------CHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHhCC----------CHHHHHHHHHHHHH
Confidence 4899999999999999999999987654333444444 35556665444443
No 256
>3bbn_M Ribosomal protein S13; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=25.73 E-value=7 Score=34.57 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=19.6
Q ss_pred HHHhcccCCCHHHHHHHHHh-CC
Q 010406 295 SLFGEVWGIGPATAQKLYEK-GH 316 (511)
Q Consensus 295 ~lf~~I~GvGpktA~~l~~~-Gi 316 (511)
--|+.|+|||+.+|.++.+. ||
T Consensus 62 ~aLt~IyGIG~~~A~~I~~~~gI 84 (145)
T 3bbn_M 62 YSLQYIHGIGRSRSRQILLDLNF 84 (145)
T ss_dssp TGGGGSTTCCSSTTTGGGTTTTC
T ss_pred EeeeeecCccHHHHHHHHHHcCC
Confidence 35689999999999999987 98
No 257
>2i5u_A DNAD domain protein; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG, U function; HET: MSE; 1.50A {Enterococcus faecalis} SCOP: a.275.1.1
Probab=25.65 E-value=31 Score=27.06 Aligned_cols=19 Identities=11% Similarity=0.345 Sum_probs=11.7
Q ss_pred HHHHHHHHHhCCCCHHHHh
Q 010406 305 PATAQKLYEKGHRTLDDLK 323 (511)
Q Consensus 305 pktA~~l~~~Gi~tledL~ 323 (511)
-+..+.|.++|++|++|++
T Consensus 64 ~~IL~~W~~~gi~T~e~v~ 82 (83)
T 2i5u_A 64 NAILKDWEQRGFKSVEERE 82 (83)
T ss_dssp HHHHHHHHHHTCCC-----
T ss_pred HHHHHHHHHcCCCCHHHHh
Confidence 3567889999999999985
No 258
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=25.15 E-value=14 Score=39.81 Aligned_cols=49 Identities=29% Similarity=0.379 Sum_probs=15.7
Q ss_pred CCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhcccCCCHHHHHHHHHh-CCC
Q 010406 261 GIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHR 317 (511)
Q Consensus 261 gIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~-Gi~ 317 (511)
||+.++|.+|....-... ++.+++ .||.. ..|+|||.++|..+-.. |+.
T Consensus 18 g~~~~~a~~i~~~yg~~~---~~~i~~-nPy~l----~~i~gigf~~aD~ia~~~g~~ 67 (574)
T 3e1s_A 18 GLTINQAQRAVKHFGADA---LDRLEK-DLFTL----TEVEGIGFLTADKLWQARGGA 67 (574)
T ss_dssp ------------------------------CGG----GTSSSCCHHHHHTTC------
T ss_pred CCCHHHHHHHHHHHHHHH---HHHHHh-CCccc----CCcCCCCHHHHHHHHHHcCCC
Confidence 899999999988775433 444444 46654 49999999999999887 885
No 259
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=24.54 E-value=96 Score=30.02 Aligned_cols=87 Identities=20% Similarity=0.310 Sum_probs=53.5
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhcccCCCHHHHHHHHHh-------CCCCHHHHhhcc
Q 010406 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-------GHRTLDDLKNED 326 (511)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~-------Gi~tledL~~~~ 326 (511)
.++..||||++.++.|+.+- | +.-++.+.... ...|.++.|+..++|.+|.+. |+.|-.++....
T Consensus 3 ~~~~~l~gi~~~~~~kL~~~---g-i~t~~~~~~~~----~~~L~~~~gis~~~a~~~i~~a~~~~~~~~~~~~~~~~~~ 74 (322)
T 2i1q_A 3 DNLTDLPGVGPSTAEKLVEA---G-YIDFMKIATAT----VGELTDIEGISEKAAAKMIMGARDLCDLGFKSGIDLLKQR 74 (322)
T ss_dssp --CTTSTTCCHHHHHHHHHH---T-CCSHHHHHTCC----HHHHHTSTTCCHHHHHHHHHHHHHHTTCSCCCTHHHHHHH
T ss_pred ccHhhcCCCCHHHHHHHHHc---C-CCcHHHHHhCC----HHHHHHhhCcCHHHHHHHHHHHHHhhhhcCCcHHHHHHHh
Confidence 36888999999999987763 4 45566655433 234558999999988888752 677777775321
Q ss_pred Ccchhhhhcccchhhhc-cCcCH
Q 010406 327 SLTHSQRLGLKYFDDIK-TRIPR 348 (511)
Q Consensus 327 ~L~~~q~~Glk~~~d~~-~~i~r 348 (511)
.-...-..|+.-.+++. ..+++
T Consensus 75 ~~~~~i~TG~~~LD~~l~GGl~~ 97 (322)
T 2i1q_A 75 STVWKLSTSSSELDSVLGGGLES 97 (322)
T ss_dssp TTCCEECCSCHHHHHHTTSSEET
T ss_pred ccCCeecCCChhHHHhcCCCccC
Confidence 10011124666666665 34444
No 260
>2zix_A Crossover junction endonuclease MUS81; helix-hairpin-helix, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium, metal-binding, nucleus; 3.50A {Homo sapiens}
Probab=24.22 E-value=12 Score=36.93 Aligned_cols=59 Identities=15% Similarity=0.305 Sum_probs=36.3
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhh-HHHHh-hchhHHHHHHhcc-cC-----CCHHHHHHHHHh
Q 010406 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKL-EHFEK-DEKVRTISLFGEV-WG-----IGPATAQKLYEK 314 (511)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~l-e~l~~-~~~~~~l~lf~~I-~G-----vGpktA~~l~~~ 314 (511)
.+|..|||||...|..|.+.. .+...| +.++. ..+.....+|.++ .| |||..++++|+-
T Consensus 233 ~~L~~I~GVs~~~A~~I~~~y--pTp~~L~~Ay~~~~~~~e~~~lL~~l~~g~~~r~IG~~lSrkI~~~ 299 (307)
T 2zix_A 233 RQLMQVRGVSGEKAAALVDRY--STPASLLAAYDACATPKEQETLLSTIKCGRLQRNLGPALSRTLSQL 299 (307)
T ss_dssp HTTTCSTTCCSTTTTTSSSSS--CSHHHHHHHHHCCSSGGGTTTTTSCCCCTTTTCCCCHHHHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHHc--CCHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCccCHHHHHHHHHH
Confidence 679999999999988887633 233333 22221 0111122344455 23 999999999985
No 261
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=23.12 E-value=74 Score=31.04 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=18.2
Q ss_pred hhhhcCCCCCCHHHHHHHHHH
Q 010406 253 ADQVKGLPGIGKSMQDHIQEI 273 (511)
Q Consensus 253 ~~~l~~lpgIG~~ia~kI~Ei 273 (511)
.++|..|||||..+|+.|.-+
T Consensus 209 ~~~L~~lpGIG~~TA~~ill~ 229 (295)
T 2jhn_A 209 YEYLTSFKGIGRWTAELVLSI 229 (295)
T ss_dssp HHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHhcCCCcCHHHHHHHHHH
Confidence 467999999999999998755
No 262
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=22.82 E-value=96 Score=32.86 Aligned_cols=52 Identities=15% Similarity=0.330 Sum_probs=33.2
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHHhcccCCCHHHHHHHHHh--CCCC
Q 010406 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRT 318 (511)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l~~~--Gi~t 318 (511)
+..|||||+.+++++..+ | +..+.+|.+. +...-..| |+.....||+. |+..
T Consensus 340 V~kl~GIG~~t~~~L~~l---G-I~TigDL~~~-~~~L~~~f------G~~~~~~l~~~a~Gid~ 393 (517)
T 3pzp_A 340 IRKVSGIGKVTEKMLKAL---G-IITCTELYQQ-RALLSLLF------SETSWHYFLHISLGLGS 393 (517)
T ss_dssp GGGSTTCCHHHHHHHHHT---T-CCBHHHHHHH-HHHHHHHS------CHHHHHHHHHHHTTCCC
T ss_pred hhhhccccHHHHHHHHHh---C-CCcHHHHHhh-HHHHHHHh------ChHHHHHHHHHHcCCCc
Confidence 678999999998887754 3 4445555542 22223334 67778888764 8754
Done!