Query 010407
Match_columns 511
No_of_seqs 263 out of 1380
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 00:10:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010407.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010407hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02538 2,3-bisphosphoglycera 100.0 9E-178 2E-182 1417.6 54.6 505 4-508 9-515 (558)
2 TIGR01307 pgm_bpd_ind 2,3-bisp 100.0 4E-169 8E-174 1346.2 51.5 462 16-508 1-464 (501)
3 COG0696 GpmI Phosphoglyceromut 100.0 2E-167 5E-172 1304.1 44.1 466 14-507 2-470 (509)
4 PRK05434 phosphoglyceromutase; 100.0 8E-161 2E-165 1287.8 49.6 469 13-509 2-472 (507)
5 KOG4513 Phosphoglycerate mutas 100.0 1E-141 2E-146 1077.8 41.1 480 3-508 6-487 (531)
6 PF06415 iPGM_N: BPG-independe 100.0 1.1E-85 2.4E-90 641.3 22.4 221 97-327 1-223 (223)
7 PF01676 Metalloenzyme: Metall 100.0 6.1E-41 1.3E-45 332.8 10.8 149 331-509 70-218 (252)
8 PRK04024 cofactor-independent 99.9 1.1E-26 2.4E-31 245.9 11.6 151 337-509 199-369 (412)
9 TIGR00306 apgM 2,3-bisphosphog 99.9 1.1E-25 2.5E-30 237.3 11.2 155 333-509 189-363 (396)
10 PRK04200 cofactor-independent 99.9 6.9E-25 1.5E-29 231.3 11.7 155 333-509 185-361 (395)
11 TIGR02535 hyp_Hser_kinase prop 99.9 1.9E-24 4.1E-29 228.1 11.4 155 333-509 186-363 (396)
12 COG3635 Predicted phosphoglyce 99.9 5E-22 1.1E-26 204.9 11.5 152 335-509 200-371 (408)
13 PRK04135 cofactor-independent 99.8 7.7E-21 1.7E-25 199.8 11.1 141 333-509 199-352 (395)
14 TIGR01696 deoB phosphopentomut 99.8 1.6E-18 3.6E-23 181.6 16.1 131 335-509 216-347 (381)
15 PRK12383 putative mutase; Prov 99.8 2.4E-18 5.2E-23 181.8 14.8 130 336-509 234-363 (406)
16 COG1015 DeoB Phosphopentomutas 99.7 7.6E-18 1.6E-22 173.7 13.2 132 335-510 226-359 (397)
17 PRK05362 phosphopentomutase; P 99.7 5.3E-17 1.2E-21 171.3 15.6 131 335-509 223-355 (394)
18 cd00016 alkPPc Alkaline phosph 99.1 1.5E-09 3.2E-14 115.1 13.1 112 398-509 232-361 (384)
19 KOG2645 Type I phosphodiestera 98.5 3.9E-07 8.4E-12 97.6 10.2 117 345-473 115-239 (418)
20 PF01663 Phosphodiest: Type I 98.3 6.6E-07 1.4E-11 90.9 5.7 69 405-473 174-248 (365)
21 TIGR02335 hydr_PhnA phosphonoa 98.3 1E-05 2.2E-10 86.7 13.8 65 402-472 176-242 (408)
22 PRK10518 alkaline phosphatase; 97.9 7.1E-05 1.5E-09 81.6 11.7 111 398-509 325-452 (476)
23 KOG2126 Glycosylphosphatidylin 97.7 2.9E-05 6.2E-10 88.4 4.0 69 401-470 193-263 (895)
24 PF00884 Sulfatase: Sulfatase; 97.7 0.00046 1E-08 67.9 11.6 76 396-471 150-251 (308)
25 smart00098 alkPPc Alkaline pho 97.4 0.00064 1.4E-08 73.3 9.5 74 398-471 235-310 (419)
26 PF08665 PglZ: PglZ domain; I 97.3 0.00054 1.2E-08 65.3 7.0 59 413-471 110-175 (181)
27 COG1785 PhoA Alkaline phosphat 97.2 0.0013 2.8E-08 71.7 9.4 74 398-471 281-356 (482)
28 PRK11560 phosphoethanolamine t 97.0 0.013 2.8E-07 65.6 15.0 126 335-471 318-468 (558)
29 PF00245 Alk_phosphatase: Alka 97.0 0.00088 1.9E-08 72.3 5.5 74 398-471 238-313 (421)
30 COG1524 Uncharacterized protei 96.9 0.00065 1.4E-08 73.2 3.7 60 413-472 216-281 (450)
31 PRK04135 cofactor-independent 96.9 0.0013 2.8E-08 70.5 5.6 64 12-84 4-69 (395)
32 COG3635 Predicted phosphoglyce 96.6 0.0024 5.2E-08 67.7 5.3 69 15-92 3-76 (408)
33 TIGR02687 conserved hypothetic 96.6 0.0034 7.4E-08 73.1 6.9 58 414-473 569-631 (844)
34 TIGR03417 chol_sulfatase choli 96.4 0.0074 1.6E-07 66.2 7.5 37 435-471 253-293 (500)
35 TIGR02535 hyp_Hser_kinase prop 96.0 0.0081 1.8E-07 64.5 5.0 59 17-84 2-63 (396)
36 KOG4126 Alkaline phosphatase [ 96.0 0.021 4.6E-07 62.5 8.1 76 398-473 326-402 (529)
37 PRK04200 cofactor-independent 95.9 0.0094 2E-07 64.0 4.9 59 17-84 2-63 (395)
38 COG3119 AslA Arylsulfatase A a 95.8 0.023 5.1E-07 62.0 7.7 36 434-469 259-298 (475)
39 PRK13759 arylsulfatase; Provis 95.7 0.025 5.4E-07 61.8 7.2 65 434-509 267-335 (485)
40 PRK09598 lipid A phosphoethano 95.6 0.29 6.2E-06 54.6 15.2 36 435-470 404-441 (522)
41 PRK04024 cofactor-independent 95.4 0.02 4.4E-07 61.8 5.3 59 17-84 4-65 (412)
42 KOG2125 Glycosylphosphatidylin 95.1 0.021 4.6E-07 64.5 4.4 64 410-473 187-256 (760)
43 PRK11598 putative metal depend 95.1 0.29 6.2E-06 54.9 13.2 37 435-471 418-458 (545)
44 PRK03776 phosphoglycerol trans 95.0 0.27 5.8E-06 57.0 12.8 37 435-471 358-398 (762)
45 TIGR00306 apgM 2,3-bisphosphog 94.6 0.03 6.4E-07 60.2 3.8 59 19-86 1-63 (396)
46 PRK12363 phosphoglycerol trans 93.8 0.68 1.5E-05 53.4 12.6 128 336-471 240-395 (703)
47 COG3083 Predicted hydrolase of 92.5 0.52 1.1E-05 52.2 8.8 36 435-470 423-462 (600)
48 PRK10649 hypothetical protein; 92.2 1.1 2.4E-05 50.5 11.3 37 435-471 427-465 (577)
49 COG1368 MdoB Phosphoglycerol t 85.1 3.5 7.6E-05 47.1 8.9 129 333-472 340-495 (650)
50 cd01455 vWA_F11C1-5a_type Von 84.7 2.9 6.2E-05 41.0 6.9 75 123-225 111-186 (191)
51 KOG2124 Glycosylphosphatidylin 83.7 1.4 3.1E-05 51.3 4.9 57 416-472 199-261 (883)
52 KOG3867 Sulfatase [General fun 81.1 2.3 5E-05 47.6 5.2 40 433-472 267-310 (528)
53 PF01261 AP_endonuc_2: Xylose 79.2 9.2 0.0002 35.4 8.0 81 140-225 27-118 (213)
54 COG2861 Uncharacterized protei 77.5 5.9 0.00013 40.3 6.3 159 14-187 26-206 (250)
55 TIGR03397 acid_phos_Burk acid 77.2 11 0.00025 41.8 9.0 57 441-509 365-426 (483)
56 PRK09453 phosphodiesterase; Pr 72.2 11 0.00025 35.4 6.6 68 127-202 3-72 (182)
57 cd01453 vWA_transcription_fact 70.1 18 0.00039 34.5 7.5 72 124-225 108-179 (183)
58 COG4255 Uncharacterized protei 67.5 22 0.00049 36.6 7.7 127 334-474 166-299 (318)
59 PF01261 AP_endonuc_2: Xylose 67.1 16 0.00035 33.8 6.4 24 139-162 70-93 (213)
60 KOG3731 Sulfatases [Carbohydra 66.3 17 0.00036 40.3 7.0 37 434-470 272-312 (541)
61 smart00518 AP2Ec AP endonuclea 62.6 28 0.0006 34.6 7.5 81 138-225 43-128 (273)
62 PF07394 DUF1501: Protein of u 59.9 79 0.0017 33.5 10.8 80 413-508 244-327 (392)
63 TIGR02335 hydr_PhnA phosphonoa 59.9 6.5 0.00014 42.6 2.6 60 15-88 12-71 (408)
64 cd01467 vWA_BatA_type VWA BatA 56.3 31 0.00068 31.7 6.2 55 112-169 89-145 (180)
65 PRK09856 fructoselysine 3-epim 55.1 24 0.00052 35.1 5.6 31 138-168 88-118 (275)
66 COG3379 Uncharacterized conser 54.3 20 0.00044 39.2 5.1 67 405-471 182-265 (471)
67 COG2194 Predicted membrane-ass 52.9 23 0.0005 40.1 5.5 37 435-471 419-457 (555)
68 PRK06552 keto-hydroxyglutarate 51.4 43 0.00093 33.2 6.6 121 81-225 67-206 (213)
69 COG1954 GlpP Glycerol-3-phosph 51.4 71 0.0015 31.2 7.7 77 136-225 31-118 (181)
70 PRK13685 hypothetical protein; 50.4 53 0.0012 34.2 7.4 38 125-166 196-238 (326)
71 PTZ00441 sporozoite surface pr 47.3 98 0.0021 35.4 9.2 56 108-165 129-189 (576)
72 PRK01060 endonuclease IV; Prov 46.5 78 0.0017 31.5 7.7 80 138-222 45-131 (281)
73 cd07937 DRE_TIM_PC_TC_5S Pyruv 44.7 1.1E+02 0.0024 31.2 8.6 54 123-187 107-161 (275)
74 PF03279 Lip_A_acyltrans: Bact 44.6 86 0.0019 31.7 7.8 124 61-187 118-282 (295)
75 TIGR03417 chol_sulfatase choli 43.4 25 0.00055 38.8 3.9 32 18-51 5-38 (500)
76 cd01465 vWA_subgroup VWA subgr 43.4 82 0.0018 28.4 6.7 39 124-166 98-139 (170)
77 COG2515 Acd 1-aminocyclopropan 43.1 26 0.00056 37.0 3.7 34 129-167 67-100 (323)
78 KOG1434 Meiotic recombination 43.0 4.9 0.00011 41.6 -1.5 63 273-352 149-216 (335)
79 PF13768 VWA_3: von Willebrand 42.7 56 0.0012 29.4 5.5 137 19-180 3-145 (155)
80 TIGR03436 acidobact_VWFA VWFA- 42.4 92 0.002 31.5 7.6 37 126-165 167-203 (296)
81 PRK07114 keto-hydroxyglutarate 42.0 54 0.0012 32.9 5.7 120 80-224 69-212 (222)
82 PF02995 DUF229: Protein of un 41.9 31 0.00066 38.4 4.3 31 440-470 310-344 (497)
83 PF13519 VWA_2: von Willebrand 39.2 1.6E+02 0.0035 26.0 7.9 74 123-224 99-172 (172)
84 PF05827 ATP-synt_S1: Vacuolar 36.1 50 0.0011 33.6 4.5 50 414-468 127-177 (282)
85 COG1082 IolE Sugar phosphate i 35.2 1.8E+02 0.0038 28.5 8.1 65 123-187 60-138 (274)
86 cd00198 vWFA Von Willebrand fa 34.6 88 0.0019 26.8 5.3 42 122-166 100-141 (161)
87 cd00019 AP2Ec AP endonuclease 34.5 63 0.0014 32.3 4.9 26 138-163 83-108 (279)
88 PRK13753 dihydropteroate synth 34.3 2E+02 0.0044 29.9 8.6 65 124-188 2-73 (279)
89 PRK13125 trpA tryptophan synth 33.7 1.6E+02 0.0035 29.4 7.6 98 61-187 31-128 (244)
90 COG1015 DeoB Phosphopentomutas 33.5 40 0.00086 36.5 3.3 39 16-54 2-40 (397)
91 cd01477 vWA_F09G8-8_type VWA F 33.0 1E+02 0.0023 29.8 6.0 44 123-169 131-174 (193)
92 PRK13209 L-xylulose 5-phosphat 32.7 95 0.0021 31.0 5.8 26 138-163 97-122 (283)
93 TIGR01182 eda Entner-Doudoroff 32.6 1.1E+02 0.0024 30.3 6.0 120 80-222 58-198 (204)
94 TIGR01499 folC folylpolyglutam 31.9 1.1E+02 0.0025 32.3 6.6 109 284-433 2-125 (397)
95 cd01454 vWA_norD_type norD typ 31.6 1.3E+02 0.0029 27.7 6.2 51 124-178 104-163 (174)
96 cd02685 MIT_C MIT_C; domain fo 31.4 1E+02 0.0022 29.3 5.4 51 137-187 33-83 (148)
97 cd01465 vWA_subgroup VWA subgr 31.2 1.8E+02 0.0039 26.2 6.9 15 157-171 98-112 (170)
98 PRK12383 putative mutase; Prov 31.0 46 0.00099 36.4 3.4 39 16-54 2-42 (406)
99 PRK11613 folP dihydropteroate 30.0 2.2E+02 0.0047 29.7 8.0 89 123-223 14-109 (282)
100 cd01454 vWA_norD_type norD typ 29.9 2.2E+02 0.0048 26.2 7.4 40 158-199 106-148 (174)
101 cd07388 MPP_Tt1561 Thermus the 29.7 2.8E+02 0.0061 27.7 8.5 68 123-202 3-71 (224)
102 cd00842 MPP_ASMase acid sphing 29.6 2E+02 0.0043 29.1 7.6 31 400-433 52-84 (296)
103 PF07555 NAGidase: beta-N-acet 29.4 1.9E+02 0.004 30.5 7.5 52 138-192 54-105 (306)
104 PRK00994 F420-dependent methyl 29.4 1.7E+02 0.0038 30.1 6.8 69 395-467 41-118 (277)
105 PRK13759 arylsulfatase; Provis 29.0 36 0.00077 37.5 2.2 49 18-70 9-58 (485)
106 cd04501 SGNH_hydrolase_like_4 28.6 3E+02 0.0065 25.1 8.1 59 400-466 45-103 (183)
107 COG1456 CdhE CO dehydrogenase/ 27.2 2.5E+02 0.0055 30.6 7.9 117 342-475 61-198 (467)
108 cd03770 SR_TndX_transposase Se 26.9 2.7E+02 0.0058 25.2 7.2 26 141-169 86-112 (140)
109 TIGR01496 DHPS dihydropteroate 26.8 3.3E+02 0.0072 27.6 8.6 82 130-223 13-94 (257)
110 TIGR00853 pts-lac PTS system, 26.5 1.6E+02 0.0035 25.4 5.4 77 124-209 4-91 (95)
111 PRK01060 endonuclease IV; Prov 25.6 2.4E+02 0.0053 28.0 7.4 24 138-161 87-110 (281)
112 PF00072 Response_reg: Respons 25.3 2.9E+02 0.0062 22.5 6.7 24 404-427 33-56 (112)
113 cd00019 AP2Ec AP endonuclease 25.0 2.8E+02 0.006 27.7 7.6 83 140-225 45-129 (279)
114 PRK09140 2-dehydro-3-deoxy-6-p 24.9 3.5E+02 0.0075 26.6 8.1 83 82-184 63-148 (206)
115 COG2069 CdhD CO dehydrogenase/ 24.6 2E+02 0.0044 30.6 6.5 92 367-473 107-212 (403)
116 cd01450 vWFA_subfamily_ECM Von 23.2 2.2E+02 0.0047 24.9 5.9 31 123-154 103-133 (161)
117 TIGR00381 cdhD CO dehydrogenas 23.0 3E+02 0.0064 30.2 7.6 33 412-444 151-183 (389)
118 PRK05362 phosphopentomutase; P 23.0 83 0.0018 34.3 3.6 35 16-50 2-36 (394)
119 PTZ00445 p36-lilke protein; Pr 22.8 1.5E+02 0.0033 29.9 5.0 67 397-463 25-95 (219)
120 TIGR00438 rrmJ cell division p 22.7 3.1E+02 0.0067 25.7 7.1 61 402-467 86-147 (188)
121 TIGR01696 deoB phosphopentomut 22.7 82 0.0018 34.2 3.5 37 17-53 1-37 (381)
122 cd01829 SGNH_hydrolase_peri2 S 22.6 3E+02 0.0064 25.5 6.9 62 406-467 51-116 (200)
123 smart00518 AP2Ec AP endonuclea 22.5 1.6E+02 0.0034 29.2 5.3 25 137-161 81-105 (273)
124 cd01460 vWA_midasin VWA_Midasi 22.2 1.1E+02 0.0024 31.5 4.2 40 124-165 165-204 (266)
125 PRK13210 putative L-xylulose 5 22.2 1.8E+02 0.004 28.8 5.7 25 138-162 92-116 (284)
126 PF05368 NmrA: NmrA-like famil 22.1 5.2E+02 0.011 24.7 8.7 80 103-187 49-133 (233)
127 COG1574 Predicted metal-depend 21.9 87 0.0019 35.5 3.6 43 122-165 280-345 (535)
128 PF05705 DUF829: Eukaryotic pr 21.7 2.1E+02 0.0046 27.8 6.0 48 397-444 191-239 (240)
129 TIGR00542 hxl6Piso_put hexulos 21.6 1.6E+02 0.0035 29.4 5.2 55 138-197 92-150 (279)
130 cd00003 PNPsynthase Pyridoxine 21.5 2.4E+02 0.0053 28.7 6.3 103 89-209 49-161 (234)
131 PF01081 Aldolase: KDPG and KH 21.5 73 0.0016 31.4 2.6 89 78-185 56-147 (196)
132 TIGR02635 RhaI_grampos L-rhamn 21.4 2.6E+02 0.0056 30.3 6.9 33 138-171 114-146 (378)
133 PF03460 NIR_SIR_ferr: Nitrite 21.1 2.1E+02 0.0046 22.5 4.8 34 123-157 8-41 (69)
134 cd01822 Lysophospholipase_L1_l 21.0 5.5E+02 0.012 23.0 8.2 11 335-345 23-33 (177)
135 cd03174 DRE_TIM_metallolyase D 20.8 5.1E+02 0.011 25.4 8.5 36 123-161 90-135 (265)
136 cd01480 vWA_collagen_alpha_1-V 20.7 2.5E+02 0.0053 26.4 6.0 11 19-29 5-15 (186)
137 PRK06886 hypothetical protein; 20.5 1E+03 0.022 25.1 12.1 75 139-227 161-235 (329)
138 TIGR00433 bioB biotin syntheta 20.5 4.2E+02 0.009 26.7 7.9 47 139-187 64-110 (296)
139 PRK05265 pyridoxine 5'-phospha 20.3 2.7E+02 0.0057 28.6 6.3 98 89-204 52-159 (239)
No 1
>PLN02538 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
Probab=100.00 E-value=8.8e-178 Score=1417.62 Aligned_cols=505 Identities=82% Similarity=1.291 Sum_probs=475.0
Q ss_pred CccccCCCCCCCCcEEEEEEeccCCCCCCCCCccccCCCccHHHHHhhCCCCceeeeccccccCCCCCCCCCcchhhhcc
Q 010407 4 WKLKEHPQLSRNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNA 83 (511)
Q Consensus 4 ~~~~~~~~~~~~~~v~L~IlDGwG~~~~~~~NAi~~A~tp~~d~l~~~~p~~~~~L~asG~~VGLP~~gqmGNSEVGH~~ 83 (511)
|.+++++.+++++|||||||||||++++.++|||++|+||+||+|+++||+.+++|+|||++||||+.+|||||||||||
T Consensus 9 ~~~~~~~~~~~~~pv~LiILDGwG~~~~~~~NAi~~A~tP~~D~l~~~~p~~~~~l~AsG~~VGLP~~~qmGNSEVGHln 88 (558)
T PLN02538 9 WKLAPHPKIPKGKPLLLIVLDGWGENAPDEFNAIHVAPTPTMDSLKAGAPERWRLVKAHGTAVGLPSDDDMGNSEVGHNA 88 (558)
T ss_pred ccccCCCCCCCCCCEEEEEecCCCCCCCCCCCHhhhcCCCCHHHHHHhCCCCCceEEECCCcCCCCCCCCCcchHHhhhh
Confidence 78899998888899999999999999999999999999999999999999422799999999999933459999999999
Q ss_pred cCCccccccchHHHHHHHhcCCCcCchhHhhhhhhcCCCceEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEEee
Q 010407 84 LGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILT 163 (511)
Q Consensus 84 iGaGRiv~q~l~rI~~ai~~g~~~~n~~~~~~~~~~~~~~lHl~GLlSdGGVHsh~~Hl~al~~~a~~~g~~~v~vH~~~ 163 (511)
|||||||+|+++||++||++|+||+|++|+++++.+++++|||||||||||||||++||++|+++|+++|+++||||+|+
T Consensus 89 iGaGRiv~Q~l~rI~~ai~~g~~~~n~~l~~~~~~~~~~~lHl~GL~SdGGVHSh~~Hl~al~~~a~~~gv~~v~vH~f~ 168 (558)
T PLN02538 89 LGAGRIFAQGAKLVDLALASGKIFEGEGFKYIKEAFATGTLHLIGLLSDGGVHSRLDQLQLLLKGAAERGAKRIRVHVLT 168 (558)
T ss_pred hccceeecchhHHHHHHHhcCCcccCHHHHHHHHHhcCCeeEEEEeccCCCcccHHHHHHHHHHHHHHcCCCeEEEEEEc
Confidence 99999999999999999999999999999999998866799999999999999999999999999999999999999999
Q ss_pred cCCCCCCCchHHHHHHHHHHHHHHhcCCCCceEEEEeecccccccCCCCChHHHHHHHHHHHhCCCCCCccCHHHHHHHH
Q 010407 164 DGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKL 243 (511)
Q Consensus 164 DGRDt~p~s~~~yl~~l~~~~~~~~~~~~~~~iasv~GRyyvaMDR~d~rw~rv~~ay~a~~~g~g~~~~~~~~~ai~~~ 243 (511)
|||||+|+||++||++||+.|++++++|+.++||||+||||.||||||+||+||++||++||.|+|+..++|+.+||+++
T Consensus 169 DGRDt~p~S~~~yl~~l~~~l~~~~~~g~~g~iAsv~GR~yyaMDR~d~rW~rv~~ay~alv~g~~~~~~~~~~~ai~~~ 248 (558)
T PLN02538 169 DGRDVPDGSSVGFVETLEKDLAELREKGCDARIASGGGRMYVTMDRYENDWNVVKRGWDAHVLGEAPHKFKSALEAVKKL 248 (558)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHhhcCCCcEEEEEEeCCceeecccccccHHHHHHHHHHHhcCCCccccCCHHHHHHHH
Confidence 99999999999999999999998755565249999999953399999999999999999999999954789999999999
Q ss_pred HcCCC-CCCCCCCCEEeecCCCCccccccCCCEEEEeecCcchHHHHHHHcccCCCCCCccCCCCCeeEEeeecccCCCC
Q 010407 244 REQPN-ANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELK 322 (511)
Q Consensus 244 y~~~~-~tDefi~P~~~~~~~~~~~~~i~dgD~vif~NfR~DR~rqi~~a~~~~~f~~f~r~~~p~l~~~~mt~Y~~~~~ 322 (511)
|++|. +|||||+|++|.+++|+|+++|+|||+|||||||+|||||||+||++++|++|+|...|++.|+|||+|+++++
T Consensus 249 y~~g~~~tDEfi~P~vi~~~~g~~~~~i~dgD~ViffNFR~DRarqit~a~~~~~f~~f~r~~~p~~~~~~mt~Yd~~~~ 328 (558)
T PLN02538 249 REEPPPANDQYLPPFVIVDEDGKPVGPIEDGDAVVTFNFRADRMVMIAKALEYEDFDKFDRVRVPKIRYAGMLQYDGELK 328 (558)
T ss_pred HhCCCCCCCCcCCCeEEecCCCCCcccccCCCEEEEecCCChHHHHHHHHhcccCCcccCcCCCCCcEEEeCeEecccCC
Confidence 99942 49999999999876678889999999999999999999999999999999999998888899999999999999
Q ss_pred CccccccCCccccccHHHHHHhCCCcEEeeecCCccccEEEeeCCcccccccCCCceEEeecCCccccccCCcCCCHHHH
Q 010407 323 LPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEI 402 (511)
Q Consensus 323 ~~~~fl~~~~~~~~tl~evLs~~Gl~q~riAEteKyahvt~FfnGG~~~~~~~~ge~r~li~sp~V~tyDl~pemsa~ev 402 (511)
+|++|||||++++|||+|||+++|++|+||||||||||||||||||++.+|+.++|+|+++|||+|+|||++|+|||+++
T Consensus 329 ~p~~~~f~p~~~~ntLgevls~~Gl~QlriAETEKyaHVTfFfNGG~e~~f~~e~e~~i~ipsp~v~tyd~~PeMSA~eV 408 (558)
T PLN02538 329 LPSHYLVSPPLIERTSGEYLVANGVRTFACSETVKFGHVTFFWNGNRSGYFNEKLEEYVEIPSDNGIPFNVQPKMKALEI 408 (558)
T ss_pred CcceEeeCCCcCCCCHHHHHHhCCCceEEeecccccceeEEeecCCccccCCCCCceEEECCCCCCCCcccCCCCCHHHH
Confidence 99777889999999999999999999999999999999999999999999943379999999999999999999999999
Q ss_pred HHHHHHHHHcCCCcEEEEecCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEeCCCCChhhhhccCCCCC
Q 010407 403 AERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGE 482 (511)
Q Consensus 403 ~d~~i~al~~~~yDfV~vnfanpDmvGHtgd~ea~~kAIE~vD~~Lg~ll~al~~~g~~lIITADHGN~E~m~~~D~~~~ 482 (511)
+++++++|++++||||++||+|||||||+|+++++++|||+||+||++|++++++.|+.+||||||||+|+|++.|++|+
T Consensus 409 td~~i~~i~~~~ydfi~vNfan~DmvGHtG~~ea~ikAIE~vD~~Lg~Il~al~~~g~~liITADHGNaE~M~d~~~~G~ 488 (558)
T PLN02538 409 AEKARDALLSGKFDQVRVNLANGDMVGHTGDLEATIVACEAVDAAVKEILDAVEQVGGIYLVTADHGNAEDMVKRDKSGK 488 (558)
T ss_pred HHHHHHHHhcCCCCEEEEeccCcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEeCCCCCchhhccccccCC
Confidence 99999999999999999999999999999999999999999999999999999888899999999999999996566777
Q ss_pred Ccc-cCCCcccCCCCCCCCceEEEEcC
Q 010407 483 PLL-KDGNIQVLTSHTLKPVRFLNCLL 508 (511)
Q Consensus 483 ~~~-~~g~p~~~t~HT~npVP~ii~g~ 508 (511)
|.. ++|+|+|+|+||+||||||++++
T Consensus 489 p~~~~~Gtp~~~t~HT~npVP~Ii~g~ 515 (558)
T PLN02538 489 PLLDKDGNPQILTSHTLAPVPVAIGGP 515 (558)
T ss_pred ccccccCCCCCCCCCCCCCcCEEEEeC
Confidence 755 68999999999999999999985
No 2
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=100.00 E-value=3.8e-169 Score=1346.16 Aligned_cols=462 Identities=40% Similarity=0.664 Sum_probs=445.9
Q ss_pred CcEEEEEEeccCCCCCCCCCccccCCCccHHHHHhhCCCCceeeeccccccCCCCCCCCCcchhhhcccCCccccccchH
Q 010407 16 NIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAK 95 (511)
Q Consensus 16 ~~v~L~IlDGwG~~~~~~~NAi~~A~tp~~d~l~~~~p~~~~~L~asG~~VGLP~~gqmGNSEVGH~~iGaGRiv~q~l~ 95 (511)
+|||||||||||+++++++|||++|+||+||+|+++||+ ++|+|||++|||| +|||||||||||||||||||+|+++
T Consensus 1 ~p~~L~IlDG~G~~~~~~~nai~~A~tP~~d~l~~~~p~--~~l~asG~~VGLP-~gqmGNSEVGH~~iGaGRiv~q~~~ 77 (501)
T TIGR01307 1 KKVVLVILDGWGYRNDDDGNAIFAAKTPTMDELIAAYPY--SLLDASGLDVGLP-DGQMGNSEVGHLNIGAGRVVYQDLV 77 (501)
T ss_pred CCEEEEEecCCCCCCCCCCCHHHhcCCCcHHHHHHhCCC--eEeeeCCcccCCC-CCCCCchHHHHhhcCCCceeccchH
Confidence 589999999999999999999999999999999999999 9999999999999 9999999999999999999999999
Q ss_pred HHHHHHhcCCCcCchhHhhhhhhc-C-CCceEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEEeecCCCCCCCch
Q 010407 96 LVDLALASGKIYQDEGFNYIKPSF-E-TGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSS 173 (511)
Q Consensus 96 rI~~ai~~g~~~~n~~~~~~~~~~-~-~~~lHl~GLlSdGGVHsh~~Hl~al~~~a~~~g~~~v~vH~~~DGRDt~p~s~ 173 (511)
||++||++|+|++||+|+++++.+ + +++|||||||||||||||+|||++|+++|+++|+++||||+|+|||||+|+||
T Consensus 78 ri~~ai~~g~~~~n~~l~~~~~~~~~~~~~lHl~GL~SdGgVHsh~~hl~~l~~~a~~~g~~~v~vH~~~DGRD~~p~s~ 157 (501)
T TIGR01307 78 RISQAIKDGEFFANPALLGAIDRAKDNNGKLHLMGLVSDGGVHSHIDHLIALIELAAERGIEKVVLHAFTDGRDTAPKSA 157 (501)
T ss_pred HHHHHHhcCCcccCHHHHHHHHHHHhcCCceEEEEeccCCCCcchHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCchhH
Confidence 999999999999999999999999 4 46999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEeecccccccCCCCChHHHHHHHHHHHhCCCCCCccCHHHHHHHHHcCCCCCCCC
Q 010407 174 VGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQY 253 (511)
Q Consensus 174 ~~yl~~l~~~~~~~~~~~~~~~iasv~GRyyvaMDR~d~rw~rv~~ay~a~~~g~g~~~~~~~~~ai~~~y~~~~~tDef 253 (511)
.+||++||++|+++ |+| +||||+|||| |||| |+|||||++||++||.|+|+ .++||.+||+++|++ ++||||
T Consensus 158 ~~~~~~l~~~~~~~---~~~-~iasv~GRyy-aMDR-d~rw~rv~~ay~~~~~g~~~-~~~~~~~ai~~~y~~-~~~Def 229 (501)
T TIGR01307 158 ESYLEQLQAFLKEI---GNG-RIATISGRYY-AMDR-DQRWDRVEIAYKAITGGDGF-EFSDPVAYIQDAYAR-DITDEF 229 (501)
T ss_pred HHHHHHHHHHHHHh---CCE-EEEEEeCcce-eecC-ccchHHHHHHHHHHhcCCCC-CCCCHHHHHHHHHhC-CCCCCC
Confidence 99999999999987 775 9999999999 9999 99999999999999999995 789999999999999 599999
Q ss_pred CCCEEeecCCCCccccccCCCEEEEeecCcchHHHHHHHcccCCCCCCccCCCCCeeEEeeecccCCCCCccccccCCcc
Q 010407 254 LPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPE 333 (511)
Q Consensus 254 i~P~~~~~~~~~~~~~i~dgD~vif~NfR~DR~rqi~~a~~~~~f~~f~r~~~p~l~~~~mt~Y~~~~~~~~~fl~~~~~ 333 (511)
|+|++|.+ + ++|+|||+|||||||+|||||||+||.+++|++|+|...|++.|+|||+|++++++|++| ||++
T Consensus 230 i~p~vi~~--~---~~i~dgD~vif~NfR~DRarqi~~a~~~~~f~~f~r~~~~~~~~~~mt~Y~~~~~~~v~f--~~~~ 302 (501)
T TIGR01307 230 IKPTIIGN--G---GALKDGDAVIFFNFRADRAREITRALVNSDFDGFPREKNPKLDFVTMTQYDGTFPSPVAF--PPQS 302 (501)
T ss_pred CCCeEecC--C---CcccCCCEEEEecCCChHHHHHHHHhcCCCCCcCCcCCCCCceEEEeEEecCCCCCceec--CCCC
Confidence 99999963 2 479999999999999999999999999999999999888899999999999999999988 9999
Q ss_pred ccccHHHHHHhCCCcEEeeecCCccccEEEeeCCcccccccCCCceEEeecCCccccccCCcCCCHHHHHHHHHHHHHcC
Q 010407 334 IDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSR 413 (511)
Q Consensus 334 ~~~tl~evLs~~Gl~q~riAEteKyahvt~FfnGG~~~~~~~~ge~r~li~sp~V~tyDl~pemsa~ev~d~~i~al~~~ 413 (511)
+.|||+|+|+++|++|+||||||||||||||||||++.+| +||+|++++||+|+|||++|+||+++++++++++|+++
T Consensus 303 ~~n~lge~ls~~g~~qlriaETeKyaHVTfFfnGg~e~~f--~ge~r~lv~sp~v~tyd~~PeMsa~evtd~~i~~I~~~ 380 (501)
T TIGR01307 303 LTNTLGEVLAKHDLTQLRIAETEKYAHVTFFFNGGVEVPF--AGETRTLIPSPKVATYDLQPEMSAKAVTDAVLEAIAQG 380 (501)
T ss_pred CCCCHHHHHHHCCCcEEEEeeccccceeeeeecCCccccC--CCceeEEeCCCCCCccccCCccCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999 89999999999999999999999999999999999998
Q ss_pred CCcEEEEecCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEeCCCCChhhhhccCCCCCCcccCCCcccC
Q 010407 414 RFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVL 493 (511)
Q Consensus 414 ~yDfV~vnfanpDmvGHtgd~ea~~kAIE~vD~~Lg~ll~al~~~g~~lIITADHGN~E~m~~~D~~~~~~~~~g~p~~~ 493 (511)
+|||+++||+|+||+||+++++++++|||.+|+||++|++++++.|+.|||||||||+|.|. |+ +|+ ++
T Consensus 381 k~dfi~vnfan~DmvGHtg~~~a~v~AIE~vD~~LGrIl~aLke~G~~VIiTADHGnae~m~--d~-------~g~--p~ 449 (501)
T TIGR01307 381 KFDLIVVNFANPDMVGHTGNFEAAIKAVEALDVCLGRIVEACKKVGGTLFLTADHGNAEEMI--DE-------NGN--PH 449 (501)
T ss_pred CCCEEEEECCCcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCCChhhcc--CC-------CCC--cc
Confidence 99999999999999999999999999999999999999999999899999999999999997 43 344 48
Q ss_pred CCCCCCCceEEEEcC
Q 010407 494 TSHTLKPVRFLNCLL 508 (511)
Q Consensus 494 t~HT~npVP~ii~g~ 508 (511)
|+||+++||||++++
T Consensus 450 t~HT~~~VP~Ii~~p 464 (501)
T TIGR01307 450 TAHTTNPVPFVCVGA 464 (501)
T ss_pred cCCCCeEeeEEEEEC
Confidence 999999999999986
No 3
>COG0696 GpmI Phosphoglyceromutase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.3e-167 Score=1304.13 Aligned_cols=466 Identities=41% Similarity=0.676 Sum_probs=448.3
Q ss_pred CCCcEEEEEEeccCCCCCCCCCccccCCCccHHHHHhhCCCCceeeeccccccCCCCCCCCCcchhhhcccCCccccccc
Q 010407 14 RNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQG 93 (511)
Q Consensus 14 ~~~~v~L~IlDGwG~~~~~~~NAi~~A~tp~~d~l~~~~p~~~~~L~asG~~VGLP~~gqmGNSEVGH~~iGaGRiv~q~ 93 (511)
++||++|+||||||++++.++|||++|+||+||+||++||| ++|+|||++|||| +||||||||||+||||||||||+
T Consensus 2 ~~k~~~LiIlDG~G~~~~~~~NAv~~A~tP~~d~l~~~~P~--~~l~aSG~~VGLP-~GQmGNSEVGHlnIGAGRivyq~ 78 (509)
T COG0696 2 MKKPVVLIILDGWGYREETEGNAVALAKTPTMDALLNNYPH--TLLKASGLAVGLP-EGQMGNSEVGHLNIGAGRIVYQD 78 (509)
T ss_pred CCCcEEEEEecCCCCCcccccCHHHhcCCchHHHHHHhCCc--hhhhccccccCCC-CCcccCccccceeeecceEeecc
Confidence 47899999999999999999999999999999999999999 9999999999999 99999999999999999999999
Q ss_pred hHHHHHHHhcCCCcCchhHhhhhhhc-CC-CceEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEEeecCCCCCCC
Q 010407 94 AKLVDLALASGKIYQDEGFNYIKPSF-ET-GTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDG 171 (511)
Q Consensus 94 l~rI~~ai~~g~~~~n~~~~~~~~~~-~~-~~lHl~GLlSdGGVHsh~~Hl~al~~~a~~~g~~~v~vH~~~DGRDt~p~ 171 (511)
|+|||++|++|+|++|++|..+++.+ ++ ++||||||+||||||||+|||+||+++|+++|+++||+|+|+|||||+|+
T Consensus 79 l~rI~~aie~g~f~~n~~l~~~~~~v~~~~~~lHlmGl~S~GGVHSh~~Hl~ali~~a~k~g~~kV~~H~f~DGRD~~P~ 158 (509)
T COG0696 79 LTRIDKAIEDGSFFENPALLNAIDEVKANGSALHLMGLVSDGGVHSHIDHLLALIELAAKNGMKKVYLHAFLDGRDTAPR 158 (509)
T ss_pred cchhhhhhhcCcccccHHHHHHHHHhhhcCceEEEEecccCCcccchHHHHHHHHHHHHhcCCcEEEEEEecCCCCCCch
Confidence 99999999999999999999999999 54 59999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhcCCCCceEEEEeecccccccCCCCChHHHHHHHHHHHhCCCCCCccCHHHHHHHHHcCCCCCC
Q 010407 172 SSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNAND 251 (511)
Q Consensus 172 s~~~yl~~l~~~~~~~~~~~~~~~iasv~GRyyvaMDR~d~rw~rv~~ay~a~~~g~g~~~~~~~~~ai~~~y~~~~~tD 251 (511)
|++.||++|+++++++ |.| +|||++|||| |||| ||||||||+||++|+.++++..+.+|.++++.+|++ ++||
T Consensus 159 s~~~~le~l~~~~~~~---g~~-~iasi~GRYY-aMDR-D~rWdRve~Ay~a~~~~~~~~~~~~~~~~~~~~Y~~-~~tD 231 (509)
T COG0696 159 SALQYLEELEAKAKEY---GNG-RIASISGRYY-AMDR-DNRWDRVEKAYDALTYGEGEFTANSAVEAVQASYAR-GITD 231 (509)
T ss_pred hHHHHHHHHHHHhhcc---Cce-EEEEEeeeee-cccc-ccchHHHHHHHHHHHccccccccCCHHHHHHHHHhc-CCCc
Confidence 9999999999999988 875 9999999999 9999 999999999999999999866789999999999999 6999
Q ss_pred CCCCCEEeecCCCCccccccCCCEEEEeecCcchHHHHHHHcccCCCCCCccC-CCCCeeEEeeecccCCCCCccccccC
Q 010407 252 QYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRV-RFPKIRYAGMLQYDGELKLPSHYLVS 330 (511)
Q Consensus 252 efi~P~~~~~~~~~~~~~i~dgD~vif~NfR~DR~rqi~~a~~~~~f~~f~r~-~~p~l~~~~mt~Y~~~~~~~~~fl~~ 330 (511)
|||.|++|.+ .|.+.|+|||+|||||||+||||||+++|+.++|.+|.|. ++|+..|+|||+|+++++.|++| |
T Consensus 232 EFv~p~~i~~---~~~~~i~d~DsvIf~NFR~DRarQl~~~l~~~~f~gF~r~~~~~~~~~vtmt~Y~~~~~~~vaF--~ 306 (509)
T COG0696 232 EFVKPTVIYG---EPVAAIEDGDSVIFFNFRPDRARQLTRALTNDDFDGFSRDKKVPKNDFVTMTEYDGSDPLPVAF--P 306 (509)
T ss_pred ccccceeecC---cccccccCCCeEEEeccChhHHHHHHHHhccccccccCcccccccCceEEEEecCCCCCcceec--c
Confidence 9999999964 3677899999999999999999999999999999999995 34555799999999999999988 9
Q ss_pred CccccccHHHHHHhCCCcEEeeecCCccccEEEeeCCcccccccCCCceEEeecCCccccccCCcCCCHHHHHHHHHHHH
Q 010407 331 PPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAI 410 (511)
Q Consensus 331 ~~~~~~tl~evLs~~Gl~q~riAEteKyahvt~FfnGG~~~~~~~~ge~r~li~sp~V~tyDl~pemsa~ev~d~~i~al 410 (511)
|+++.|||+|+++++|++|+||||||||||||||||||+|.+| ++|+|++|+||+|+|||++||||+.+++++++++|
T Consensus 307 p~~i~NtlgEv~~~~gl~QlRiAETEKYAHVTfFfnGG~E~~~--~~e~r~li~SpkVaTYDl~PEMSa~evtd~~~~~i 384 (509)
T COG0696 307 PENLKNTLGEVLSKHGLTQLRIAETEKYAHVTFFFNGGVEEPF--KGEDRILIPSPKVATYDLKPEMSAKEVTDALVEAI 384 (509)
T ss_pred cccccccHHHHHHhcCchhhhhhhhccccceEEEecCcccccc--CCCccEeccCCCccccccCcccchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 89999999999999999999999999999999999
Q ss_pred HcCCCcEEEEecCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEeCCCCChhhhhccCCCCCCcccCCCc
Q 010407 411 LSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNI 490 (511)
Q Consensus 411 ~~~~yDfV~vnfanpDmvGHtgd~ea~~kAIE~vD~~Lg~ll~al~~~g~~lIITADHGN~E~m~~~D~~~~~~~~~g~p 490 (511)
++++||++++||+|||||||||++++++||||++|+||+++++++++.|+.++|||||||+|+|. |+ .|+
T Consensus 385 ~~g~~D~iV~N~ANpDMVGHTG~~eatiKAvEavD~~lg~ivd~~~~~gg~~~iTaDHGNaE~m~--d~-------~g~- 454 (509)
T COG0696 385 EKGKYDLIVLNYANPDMVGHTGNFEATIKAVEAVDECLGRIVDAVKKNGGTLLITADHGNAEQMS--DP-------AGN- 454 (509)
T ss_pred hCCCCCEEEEecCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeecCcchhhcc--CC-------CCC-
Confidence 99999999999999999999999999999999999999999999999999999999999999998 43 355
Q ss_pred ccCCCCCCCCceEEEEc
Q 010407 491 QVLTSHTLKPVRFLNCL 507 (511)
Q Consensus 491 ~~~t~HT~npVP~ii~g 507 (511)
|+|+||+||||||+++
T Consensus 455 -p~TaHT~npVp~i~~~ 470 (509)
T COG0696 455 -PHTAHTTNPVPVIYTG 470 (509)
T ss_pred -ceeccccCCccEEEEc
Confidence 4999999999999997
No 4
>PRK05434 phosphoglyceromutase; Provisional
Probab=100.00 E-value=8.5e-161 Score=1287.76 Aligned_cols=469 Identities=43% Similarity=0.700 Sum_probs=447.1
Q ss_pred CCCCcEEEEEEeccCCCCCCCCCccccCCCccHHHHHhhCCCCceeeeccccccCCCCCCCCCcchhhhcccCCcccccc
Q 010407 13 SRNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQ 92 (511)
Q Consensus 13 ~~~~~v~L~IlDGwG~~~~~~~NAi~~A~tp~~d~l~~~~p~~~~~L~asG~~VGLP~~gqmGNSEVGH~~iGaGRiv~q 92 (511)
.+++|||||||||||+++++++|||++|+||+||+|+++||+ ++|+|||++|||| +|||||||||||||||||||+|
T Consensus 2 ~~~~~~~L~IlDG~G~~~~~~~nai~~A~tp~~d~l~~~~p~--~~l~a~g~~VGLP-~gqmGNSEVGH~~iGaGriv~q 78 (507)
T PRK05434 2 MMKKPVVLIILDGWGYREETEGNAIALAKTPNLDRLWANYPH--TLLSASGLAVGLP-DGQMGNSEVGHLNIGAGRIVYQ 78 (507)
T ss_pred CCCCcEEEEEecCCCCCCCCCCCHHHhcCCCcHHHHHHhCCC--eEeecCCcccCCC-CCCccchHHhHhhcCCCceecc
Confidence 357899999999999999999999999999999999999999 9999999999999 9999999999999999999999
Q ss_pred chHHHHHHHhcCCCcCchhHhhhhhhc-C-CCceEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEEeecCCCCCC
Q 010407 93 GAKLVDLALASGKIYQDEGFNYIKPSF-E-TGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLD 170 (511)
Q Consensus 93 ~l~rI~~ai~~g~~~~n~~~~~~~~~~-~-~~~lHl~GLlSdGGVHsh~~Hl~al~~~a~~~g~~~v~vH~~~DGRDt~p 170 (511)
+++|||++|++|+|++||+|+++++.+ + +++|||||||||||||||++||++|+++|+++|+++|+||+|+|||||+|
T Consensus 79 ~~~~i~~ai~~g~~~~n~~~~~~~~~~~~~~~~lHl~GL~SdggVHsh~~hl~~l~~~a~~~g~~~v~vH~~~DGRD~~p 158 (507)
T PRK05434 79 DLTRINKAIEDGSFFENPALLDAIDKAKKNGGALHLMGLLSDGGVHSHIDHLFALLELAKEEGVKKVYVHAFLDGRDTPP 158 (507)
T ss_pred chHHHHHHHhcCCcccCHHHHHHHHHHHhcCCeEEEEEeccCCCcccHHHHHHHHHHHHHHcCCCEEEEEEecCCCCCCc
Confidence 999999999999999999999999999 4 46999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHhcCCCCceEEEEeecccccccCCCCChHHHHHHHHHHHhCCCCCCccCHHHHHHHHHcCCCCC
Q 010407 171 GSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNAN 250 (511)
Q Consensus 171 ~s~~~yl~~l~~~~~~~~~~~~~~~iasv~GRyyvaMDR~d~rw~rv~~ay~a~~~g~g~~~~~~~~~ai~~~y~~~~~t 250 (511)
+||++||++||+.|+++ |+| +||||+|||| |||| |+|||||++||++||.|+|+..+.||.+||+++|++ ++|
T Consensus 159 ~s~~~~i~~l~~~~~~~---~~~-~iasv~GRyy-amDR-d~rw~rv~~a~~~~~~g~~~~~~~~~~~~i~~~y~~-~~~ 231 (507)
T PRK05434 159 KSALGYLEELEAKLAEL---GVG-RIASVSGRYY-AMDR-DKRWDRVEKAYDALVLGEGPFTAESAVEALEASYAR-GET 231 (507)
T ss_pred hhHHHHHHHHHHHHHHh---CCe-eEEEEecccc-cccc-ccchHHHHHHHHHHhcCCCCcCCCCHHHHHHHHHhC-CCC
Confidence 99999999999999998 875 9999999999 9999 999999999999999999964579999999999999 589
Q ss_pred CCCCCCEEeecCCCCccccccCCCEEEEeecCcchHHHHHHHcccCCCCCCccCCCCCeeEEeeecccCCCCCccccccC
Q 010407 251 DQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVS 330 (511)
Q Consensus 251 Defi~P~~~~~~~~~~~~~i~dgD~vif~NfR~DR~rqi~~a~~~~~f~~f~r~~~p~l~~~~mt~Y~~~~~~~~~fl~~ 330 (511)
||||+|++|. ++|.++|+|||+|||||||+|||||||+||.+++|++|+| ..|++.|+|||+|++++++|++| |
T Consensus 232 Defi~p~vi~---~~~~~~i~d~D~vif~NfR~DRa~qi~~a~~~~~f~~f~~-~~~~~~~~~m~~Y~~~~~~~~~f--~ 305 (507)
T PRK05434 232 DEFVKPTVIG---GEPVAGIEDGDAVIFFNFRADRARQITRAFTDPDFDGFDR-VPKLLNFVTMTQYDADLKVPVAF--P 305 (507)
T ss_pred CCCCCCEEec---CCCcCcccCCCEEEEeccCChHHHHHHHHhcCcCcccCCC-CCCCceEEEceEccCCCCCceec--C
Confidence 9999999996 4567899999999999999999999999999999999999 35678899999999999999988 9
Q ss_pred CccccccHHHHHHhCCCcEEeeecCCccccEEEeeCCcccccccCCCceEEeecCCccccccCCcCCCHHHHHHHHHHHH
Q 010407 331 PPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAI 410 (511)
Q Consensus 331 ~~~~~~tl~evLs~~Gl~q~riAEteKyahvt~FfnGG~~~~~~~~ge~r~li~sp~V~tyDl~pemsa~ev~d~~i~al 410 (511)
|+++.|+++|+|+++|++|+|+||||||+|||||||||++++| ++|+|++++||+|++||+.|+|++.+++++++++|
T Consensus 306 ~~~~~~~l~e~L~~~gl~q~R~aEtek~ahvt~f~~GG~~~~~--~~e~r~~~~s~~va~yd~~p~Ms~~e~~d~~i~~l 383 (507)
T PRK05434 306 PESLKNTLGEVLAKAGLTQLRIAETEKYAHVTFFFNGGREEPF--PGEDRILIPSPKVATYDLKPEMSAYEVTDKLVEAI 383 (507)
T ss_pred CcccccHHHHHHhhCCCchhhhhcCCCCCeEEEecCCCcCCCC--CCceeeecCCceeecccCCCCCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 67999999999999999999999999999999999
Q ss_pred HcCCCcEEEEecCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEeCCCCChhhhhccCCCCCCcccCCCc
Q 010407 411 LSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNI 490 (511)
Q Consensus 411 ~~~~yDfV~vnfanpDmvGHtgd~ea~~kAIE~vD~~Lg~ll~al~~~g~~lIITADHGN~E~m~~~D~~~~~~~~~g~p 490 (511)
++++||||++||++|||+||+|+++++++|||.+|++|++|++++++.|+.+||||||||+|.|.+ + .+|.
T Consensus 384 ~~~~~Dfv~vnf~~~D~vGHtg~~~a~~~AIe~vD~~LGrll~aLk~~g~ivIITADHGn~e~m~d--~------~tg~- 454 (507)
T PRK05434 384 ESGKYDFIILNFANPDMVGHTGNLEAAVKAVEAVDECLGRVVDAVLKVGGTLLITADHGNAEQMID--P------ETGQ- 454 (507)
T ss_pred hccCCCEEEEEecCcchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCCccccccc--C------CCCC-
Confidence 988999999999999999999999999999999999999999999988899999999999999973 2 1243
Q ss_pred ccCCCCCCCCceEEEEcCC
Q 010407 491 QVLTSHTLKPVRFLNCLLE 509 (511)
Q Consensus 491 ~~~t~HT~npVP~ii~g~~ 509 (511)
+++.||++|||||++++.
T Consensus 455 -~~~~HT~~~VPlII~~p~ 472 (507)
T PRK05434 455 -PHTAHTTNPVPFILVGGK 472 (507)
T ss_pred -cccCCCCeeeEEEEEECC
Confidence 589999999999999864
No 5
>KOG4513 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.6e-142 Score=1077.84 Aligned_cols=480 Identities=67% Similarity=1.040 Sum_probs=453.7
Q ss_pred CCccccCCCCCCCCcEEEEEEeccCCCC-CCCCCccccCCCccHHHHHhhCCCCceeeeccccccCCCCCCCCCcchhhh
Q 010407 3 NWKLKEHPQLSRNNIVAVVVLDGWGEFK-PDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGH 81 (511)
Q Consensus 3 ~~~~~~~~~~~~~~~v~L~IlDGwG~~~-~~~~NAi~~A~tp~~d~l~~~~p~~~~~L~asG~~VGLP~~gqmGNSEVGH 81 (511)
+|.|..||..+..+.|.||++||||.++ +..||||..|.||.||+|.... .|++|+|||..|||| +|.||||||||
T Consensus 6 ~~~l~~~~~~~~~~sv~liViDGWG~se~d~ygNai~~a~tp~Md~L~~g~--~w~li~AHG~hVGLP-eglMGNSEVGH 82 (531)
T KOG4513|consen 6 MWKLFDHPKLPKGKSVALIVIDGWGESEPDQYGNAIHNAPTPAMDSLKRGR--TWFLIKAHGTHVGLP-EGLMGNSEVGH 82 (531)
T ss_pred hhhhhcccccCCCCeEEEEEEcccCCCCCccccchhhcCCChHHHHhhcCc--chhhhhhcCccccCC-ccccccccccc
Confidence 5899999999999999999999999997 4567999999999999998886 459999999999999 99999999999
Q ss_pred cccCCccccccchHHHHHHHhcCCCcCchhHhhhhhhcCCCceEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEE
Q 010407 82 NALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHI 161 (511)
Q Consensus 82 ~~iGaGRiv~q~l~rI~~ai~~g~~~~n~~~~~~~~~~~~~~lHl~GLlSdGGVHsh~~Hl~al~~~a~~~g~~~v~vH~ 161 (511)
++||||||++||++|||.|+++|.|++|+.|+.....+++|+|||+||+||||||||||||++|++..+++|.++||||+
T Consensus 83 l~iGaGRii~Qdivrid~Av~~gk~~~~e~~~d~~~~~~~g~lHlvGlvSDGGVHShidhl~allka~~erg~~ei~vH~ 162 (531)
T KOG4513|consen 83 LAIGAGRIIAQDIVRIDLAVASGKIKENEGFKDKSLSFEDGTLHLVGLVSDGGVHSHIDHLQALLKALAERGAKEIRVHI 162 (531)
T ss_pred cccccceeeecchhHHHHHHhcCceecccchhhHHhhccCCeEEEEEEecCCchhhhHHHHHHHHHHHHhcCCceEEEEE
Confidence 99999999999999999999999999999999998888788999999999999999999999999999999999999999
Q ss_pred eecCCCCCCCchHHHHHHHHHHHHHHhcCCCCceEEEEeecccccccCCCCChHHHHHHHHHHHhCCCCCCccCHHHHHH
Q 010407 162 LTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVK 241 (511)
Q Consensus 162 ~~DGRDt~p~s~~~yl~~l~~~~~~~~~~~~~~~iasv~GRyyvaMDR~d~rw~rv~~ay~a~~~g~g~~~~~~~~~ai~ 241 (511)
++|||||.|.|+.+||++-.++|++. ++.+++||+.|||| +||| +++||||+++|++|+.|+.++.+.+++|+++
T Consensus 163 ~tDGRDt~p~s~vgfLe~~l~fLr~~---t~~gkvAs~~GR~Y-~mDR-~N~werv~~~~~amv~ge~~~e~g~~ve~v~ 237 (531)
T KOG4513|consen 163 LTDGRDTLPGSSVGFLEADLDFLRKV---TVDGKVASGGGRMY-VMDR-ENDWERVKRGWDAMVLGEAPHEFGGAVEAVK 237 (531)
T ss_pred ecCCccCCCCcchhhHHHHHHHHHHc---cccceEeeccceEE-Eeec-cccHHHhhhhhhhhhhccCchhhcchHHHHh
Confidence 99999999999999999998888876 66679999999999 8999 9999999999999999998788999999999
Q ss_pred -HHHcCCCCCCCCCCCEEeecCCCCccccccCCCEEEEeecCcchHHHHHHHcccCCCCCCccCCCCCeeEEeeecccCC
Q 010407 242 -KLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGE 320 (511)
Q Consensus 242 -~~y~~~~~tDefi~P~~~~~~~~~~~~~i~dgD~vif~NfR~DR~rqi~~a~~~~~f~~f~r~~~p~l~~~~mt~Y~~~ 320 (511)
..|+. +.+|||++|++|.++.|+..+ +.|+|||||||+||||||+.+|.-.+|++|+|.+.|+++|++||||+.+
T Consensus 238 ~~rye~-g~~De~L~p~vi~ge~Gr~~~---~DdtiifFnfRADRMr~ia~a~~~~~~d~~~r~~~p~i~~~gMtqYk~e 313 (531)
T KOG4513|consen 238 TLRYEP-GANDEYLPPFVIVGERGRAVG---PDDTIIFFNFRADRMRMIAKALEYNDFDKFDRVRHPNIRYAGMTQYKGE 313 (531)
T ss_pred hhhhCC-CCCccccCCeEEECCCCcccC---CCCeEEEEecchHHHHHHHHHhccccccccccccCCcceEeehhhhccc
Confidence 66776 689999999999988765333 3689999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCCccccccHHHHHHhCCCcEEeeecCCccccEEEeeCCcccccccCCCceEEeecCCccccccCCcCCCHH
Q 010407 321 LKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKAL 400 (511)
Q Consensus 321 ~~~~~~fl~~~~~~~~tl~evLs~~Gl~q~riAEteKyahvt~FfnGG~~~~~~~~ge~r~li~sp~V~tyDl~pemsa~ 400 (511)
++ |.-+||.|+.+++||+|||+.+|+++++|||||||+|||||||||++..| ..|+++++|||+|++||++|+|++.
T Consensus 314 l~-psk~Lf~pp~i~~tlaE~La~~gv~~fhcaEteK~aHVTfFfNGgre~~F--~~ee~v~iPSp~v~sfd~qP~M~a~ 390 (531)
T KOG4513|consen 314 LK-PSKYLFSPPCIDRTLAEYLAHNGVRTFHCAETEKFAHVTFFFNGGREGYF--NEEEYVEIPSPSVISFDVQPKMKAL 390 (531)
T ss_pred cC-cceeeeccccccchHHHHHHhcCcceeeecccceeeeEEEEEcCCccccc--CcceEEEecCCCceeeecChhhhHH
Confidence 97 55557799999999999999999999999999999999999999999999 7799999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEecCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEeCCCCChhhhhccCCC
Q 010407 401 EIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKS 480 (511)
Q Consensus 401 ev~d~~i~al~~~~yDfV~vnfanpDmvGHtgd~ea~~kAIE~vD~~Lg~ll~al~~~g~~lIITADHGN~E~m~~~D~~ 480 (511)
+++++++++|+++++++|.||+++||||||||++|+++.|||.-|.|+++|++++++.++.++|||||||+|+|.++|
T Consensus 391 eva~ka~~~ie~G~~p~v~vNlappDMVGHTG~~EAtv~AcEatD~aig~Iy~A~~~~~y~lvvTADHGNAEkMv~~d-- 468 (531)
T KOG4513|consen 391 EVAEKARDAIESGKFPQVRVNLAPPDMVGHTGDIEATVVACEATDEAIGKIYDAIEQVGYILVVTADHGNAEKMVKRD-- 468 (531)
T ss_pred HHHHHHHHHHHcCCCCeEEEcCCCccccCcccchhhhhhHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCCHHHhccCC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998543
Q ss_pred CCCcccCCCcccCCCCCCCCceEEEEcC
Q 010407 481 GEPLLKDGNIQVLTSHTLKPVRFLNCLL 508 (511)
Q Consensus 481 ~~~~~~~g~p~~~t~HT~npVP~ii~g~ 508 (511)
|. .+|+||+.|||++|+++
T Consensus 469 -------gG--k~tsHT~~~VPl~i~~p 487 (531)
T KOG4513|consen 469 -------GG--KLTSHTLKPVPLAIGGP 487 (531)
T ss_pred -------CC--ccccccccccceEecCC
Confidence 33 38999999999999987
No 6
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=100.00 E-value=1.1e-85 Score=641.28 Aligned_cols=221 Identities=42% Similarity=0.742 Sum_probs=179.3
Q ss_pred HHHHHhcCCCcCchhHhhhhhhc-CC-CceEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEEeecCCCCCCCchH
Q 010407 97 VDLALASGKIYQDEGFNYIKPSF-ET-GTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSV 174 (511)
Q Consensus 97 I~~ai~~g~~~~n~~~~~~~~~~-~~-~~lHl~GLlSdGGVHsh~~Hl~al~~~a~~~g~~~v~vH~~~DGRDt~p~s~~ 174 (511)
||+||++|+|++||+|+++++.+ ++ ++|||||||||||||||++||++|+++|+++|+++||||+|+|||||+|+||+
T Consensus 1 I~~aI~~g~~~~n~~l~~~~~~~k~~~~~lHl~GLlSdGGVHSh~~Hl~al~~~a~~~gv~~V~vH~f~DGRDt~P~S~~ 80 (223)
T PF06415_consen 1 INKAIEDGSFFKNPVLLEAIEHAKKNGGRLHLMGLLSDGGVHSHIDHLFALIKLAKKQGVKKVYVHAFTDGRDTPPKSAL 80 (223)
T ss_dssp HHHHHHTTGGGTSHHHHHHHHHHCCTT--EEEEEEESS-SSS--HHHHHHHHHHHHHTT-SEEEEEEEE-SSSS-TTTHH
T ss_pred CchHHhCCCcccCHHHHHHHHHHHhcCCeEEEEEEecCCCccccHHHHHHHHHHHHHcCCCEEEEEEecCCCCCCcchHH
Confidence 89999999999999999999999 44 59999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeecccccccCCCCChHHHHHHHHHHHhCCCCCCccCHHHHHHHHHcCCCCCCCCC
Q 010407 175 GFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYL 254 (511)
Q Consensus 175 ~yl~~l~~~~~~~~~~~~~~~iasv~GRyyvaMDR~d~rw~rv~~ay~a~~~g~g~~~~~~~~~ai~~~y~~~~~tDefi 254 (511)
+||++|++.|+++ |.| +||||+|||| |||| |+|||||++||++||.|+|+..+.||.+||+++|++ ++|||||
T Consensus 81 ~yl~~l~~~l~~~---~~g-~IAsv~GRyy-aMDR-D~rWeRv~~Ay~alv~g~g~~~~~~~~~ai~~~Y~~-g~tDEFi 153 (223)
T PF06415_consen 81 KYLEELEEKLAEI---GIG-RIASVSGRYY-AMDR-DKRWERVEKAYDALVNGEGPNKFDDALEAIEASYAR-GITDEFI 153 (223)
T ss_dssp HHHHHHHHHHHHH---TCT-EEEEEEECCC-CT---TS-HHHHHHHHHHHCT--SE-EESSHHHHHHHHHHT-T--GGG-
T ss_pred HHHHHHHHHHHhh---CCc-eEEEEeceee-eecc-ccCHHHHHHHHHHHhcCccccccCCHHHHHHHHHcC-CCCCcCC
Confidence 9999999999998 886 9999999999 9999 999999999999999999965899999999999999 6999999
Q ss_pred CCEEeecCCCCccccccCCCEEEEeecCcchHHHHHHHcccCCCCCCccCCCCCeeEEeeecccCCCCCcccc
Q 010407 255 PPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHY 327 (511)
Q Consensus 255 ~P~~~~~~~~~~~~~i~dgD~vif~NfR~DR~rqi~~a~~~~~f~~f~r~~~p~l~~~~mt~Y~~~~~~~~~f 327 (511)
+|++|.+ .|.+.|+|||+|||||||+||||||++||++++|++|+|...|++.|+|||+|+++++.||+|
T Consensus 154 ~P~vi~~---~~~~~i~dgD~vif~NFR~DRarql~~al~~~~f~~f~r~~~~~l~~~~mt~Yd~~~~~pv~F 223 (223)
T PF06415_consen 154 PPTVISD---KPYGGIKDGDAVIFFNFRPDRARQLTRALTDPDFDGFDRGPKPNLNFVTMTEYDEDFPFPVAF 223 (223)
T ss_dssp --EEEB----SBS----TT-EEEE--S-STTTHHHHHHHH-SS--SS--STT-SSEEEECC-SBTTTTCCCSE
T ss_pred CCEEecC---CCCCCccCCCEEEEEecChhHHHHHHHHHcCCCCccCCcCCCCCcEEEECccccCCCCCcccC
Confidence 9999975 456789999999999999999999999999999999999988999999999999999999987
No 7
>PF01676 Metalloenzyme: Metalloenzyme superfamily; InterPro: IPR006124 This domain unites alkaline phosphatase, N-acetylgalactosamine-4-sulphatase, and cerebroside sulphatase, enzymes with known three-dimensional structures, with phosphopentomutase, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, phosphoglycerol transferase, phosphonate monoesterase, streptomycin-6-phosphate phosphatase, alkaline phosphodiesterase/nucleotide pyrophosphatase PC-1, and several closely related sulphatases. This domain is also related to alkaline phosphatase IPR001952 from INTERPRO []. The most conserved residues are probably involved in metal binding and catalysis.; GO: 0003824 catalytic activity, 0046872 metal ion binding; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3UN5_F 3UN3_B 3M8Y_C 3UO0_B 3UN2_B 3UNY_E ....
Probab=100.00 E-value=6.1e-41 Score=332.81 Aligned_cols=149 Identities=32% Similarity=0.446 Sum_probs=127.4
Q ss_pred CccccccHHHHHHhCCCcEEeeecCCccccEEEeeCCcccccccCCCceEEeecCCccccccCCcCCCHHHHHHHHHHHH
Q 010407 331 PPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAI 410 (511)
Q Consensus 331 ~~~~~~tl~evLs~~Gl~q~riAEteKyahvt~FfnGG~~~~~~~~ge~r~li~sp~V~tyDl~pemsa~ev~d~~i~al 410 (511)
+.+..+....+...+|+++.+++++.+++|++.||+| + .+.+++.+|++..|+|++++++++++++|
T Consensus 70 ~~~~~~~~~~~~~~~~l~~~~ia~~~~~~~i~~~~~g-----~--------~v~~~~g~t~~~~~~~~~~~~~~~~~~~l 136 (252)
T PF01676_consen 70 AGDYPNLPPSFTEKYGLKGAGIAETPKIGGIADFFGG-----M--------DVISVEGATGDVDPDMSAKEIAEAAIEAL 136 (252)
T ss_dssp EEEEES-HHHHHHHCTHHEEEEEECHHHHHHHHHTTT-----E--------EEE--STSSCCGSTTTTHHHHHHHHHHHH
T ss_pred cccccccccceeeccCceecceecccccceeHHHhCC-----c--------ccccccccccccccchhhHHHHHHHHHhh
Confidence 3344445567799999999999999999999999999 2 34555578999999999999999999999
Q ss_pred HcCCCcEEEEecCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEeCCCCChhhhhccCCCCCCcccCCCc
Q 010407 411 LSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNI 490 (511)
Q Consensus 411 ~~~~yDfV~vnfanpDmvGHtgd~ea~~kAIE~vD~~Lg~ll~al~~~g~~lIITADHGN~E~m~~~D~~~~~~~~~g~p 490 (511)
++.+||||++||.++|++||++++++++++||++|++|++|+++++..++.|||||||||++.|.
T Consensus 137 ~~~~~~~v~~~~~~~D~~GH~~~~~~~~~~ie~~D~~l~~l~~~~~~~~~~liiTaDHg~~~~~~--------------- 201 (252)
T PF01676_consen 137 KKDKYDFVFVHVKGTDEAGHRGDPEAYIEAIERIDRFLGRLLEALDKEDDLLIITADHGNDETMG--------------- 201 (252)
T ss_dssp HHTTSSEEEEEEEHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEESSBSTTTSB---------------
T ss_pred hcccCCeEEEeecCcchhhccCCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCccccC---------------
Confidence 88899999999999999999999999999999999999999999977788999999999987762
Q ss_pred ccCCCCCCCCceEEEEcCC
Q 010407 491 QVLTSHTLKPVRFLNCLLE 509 (511)
Q Consensus 491 ~~~t~HT~npVP~ii~g~~ 509 (511)
++.||+||||||++|+.
T Consensus 202 --~~~Ht~~~VPll~~g~~ 218 (252)
T PF01676_consen 202 --HTSHTREPVPLLIYGPG 218 (252)
T ss_dssp --SSS-B-B-EEEEEECTT
T ss_pred --CcCCCCceEEEEEEeCC
Confidence 57899999999999984
No 8
>PRK04024 cofactor-independent phosphoglycerate mutase; Provisional
Probab=99.94 E-value=1.1e-26 Score=245.90 Aligned_cols=151 Identities=17% Similarity=0.192 Sum_probs=131.6
Q ss_pred cHHHHHHhCCCcEEeeecCCccccEEEeeCCcccccccCCCceEEeecCCccccccC--------------Cc------C
Q 010407 337 TSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNV--------------QP------K 396 (511)
Q Consensus 337 tl~evLs~~Gl~q~riAEteKyahvt~FfnGG~~~~~~~~ge~r~li~sp~V~tyDl--------------~p------e 396 (511)
...++|.+|++|+.|.++++..+|..|+|++|+.+.+++ +++|+.++...|+.+++ -| .
T Consensus 199 ~~~~iL~~HPvN~~R~~~G~~paN~iwlwG~G~~p~lp~-f~er~gl~ga~is~~~l~kGLa~~~Gm~~~~vpg~tg~~~ 277 (412)
T PRK04024 199 KAYEVLDDHPVNKERRKQGLPPANIILLRGAGEVPEIPK-FTEKYGLKAACVAGTALIKGIARMVGMDVITVEGATGGKD 277 (412)
T ss_pred HHHHHHhcCcchHHHHhcCCCCceEEEecCCCCCCCCCC-HHHhcCCceEEEeChHHHHHHHHHcCCceeccCCCcCCCC
Confidence 348999999999999999999999999999999888864 88887666555566665 12 3
Q ss_pred CCHHHHHHHHHHHHHcCCCcEEEEecCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEeCCCCChhhhhc
Q 010407 397 MKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVK 476 (511)
Q Consensus 397 msa~ev~d~~i~al~~~~yDfV~vnfanpDmvGHtgd~ea~~kAIE~vD~~Lg~ll~al~~~g~~lIITADHGN~E~m~~ 476 (511)
.+..+.+++++++|+ +||||++||++|||+||++|++++++|||++|++|++|+++++..+.+|+|||||||++.
T Consensus 278 t~~~~k~~~~~~~l~--~~Dfv~vh~~~~D~~GH~gd~~~k~~aiE~iD~~l~~il~~l~~~~~~liITaDHgtp~~--- 352 (412)
T PRK04024 278 TNYMAKAKAAVELLK--EYDFVLLNIKGTDEAGHDGDFEGKVEVIEKIDKMLGYILDNLDLDEVYIAVTGDHSTPVE--- 352 (412)
T ss_pred CCHHHHHHHHHHHhc--cCCEEEEeccCcchhhcCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEecCCCCCcc---
Confidence 377889999999995 599999999999999999999999999999999999999999755779999999999743
Q ss_pred cCCCCCCcccCCCcccCCCCCCCCceEEEEcCC
Q 010407 477 RNKSGEPLLKDGNIQVLTSHTLKPVRFLNCLLE 509 (511)
Q Consensus 477 ~D~~~~~~~~~g~p~~~t~HT~npVP~ii~g~~ 509 (511)
.+.||+||||||++|+.
T Consensus 353 ----------------~~~HT~~pVP~ii~g~~ 369 (412)
T PRK04024 353 ----------------VKDHSGDPVPILIYGPG 369 (412)
T ss_pred ----------------cccCCCCCEeEEEEcCC
Confidence 46899999999999874
No 9
>TIGR00306 apgM 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal form. This model describes a set of proteins in the Archaea (two each in Methanococcus jannaschii, Methanobacterium thermoautotrophicum, and Archaeoglobus fulgidus) and in Aquifex aeolicus (1 member).
Probab=99.92 E-value=1.1e-25 Score=237.29 Aligned_cols=155 Identities=18% Similarity=0.141 Sum_probs=133.7
Q ss_pred cccccHHHHHHhCCCcEEeeecCCccccEEEeeCCcccccccCCCceEEeecCCccccccC--------------Cc---
Q 010407 333 EIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNV--------------QP--- 395 (511)
Q Consensus 333 ~~~~tl~evLs~~Gl~q~riAEteKyahvt~FfnGG~~~~~~~~ge~r~li~sp~V~tyDl--------------~p--- 395 (511)
++.+...++|.+|++|+.|.+++++.+|..|+|++|+.+.+++ +.+|+.++...|+.+++ .|
T Consensus 189 ~~~~~~~~iL~~HpvN~~R~~~G~~paN~iwl~G~G~~p~l~~-f~er~gl~~a~ia~~~l~kGLa~~~Gm~~~~v~gat 267 (396)
T TIGR00306 189 ELMLESAEVLQNHPINTKRAKKGKGPANMILPRGAGRMPRVES-FKERYGLRGAMIAEVDLIKGLARLIGMDVIRVEGAT 267 (396)
T ss_pred HHHHHHHHHHhcCcchHHHHhcCCCCceEEEecCCCCCCCCCC-HHHhcCCceEEEechHHHHHHHHHcCCeeecCCccc
Confidence 3456678999999999999999999999999999999888864 78887666555566665 12
Q ss_pred ---CCCHHHHHHHHHHHHHcCCCcEEEEecCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEeCCCCChh
Q 010407 396 ---KMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAE 472 (511)
Q Consensus 396 ---emsa~ev~d~~i~al~~~~yDfV~vnfanpDmvGHtgd~ea~~kAIE~vD~~Lg~ll~al~~~g~~lIITADHGN~E 472 (511)
..+.+..+++++++++ +||||++||+++||+||++|+++++++||++|+++.+++++++..+.+|+|||||||++
T Consensus 268 g~~dt~~~~k~~~~~~~l~--~yDfv~v~~~~~D~aGH~gd~~~k~~aIE~iD~~l~~~l~~l~~~~~~liiTaDHgtp~ 345 (396)
T TIGR00306 268 GGIDTDYRGKVRALILALE--EYDFVLVHTKGPDEAGHDGDPELKVRAIEKIDSKIVGPLLALDLDETRLILTADHSTPV 345 (396)
T ss_pred ccccccHHHHHHHHHHHhh--cCCEEEEEecCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhCCCEEEEeCCCCCCC
Confidence 3466778889999995 59999999999999999999999999999999999988999987778999999999973
Q ss_pred hhhccCCCCCCcccCCCcccCCCCCCCCceEEEEcCC
Q 010407 473 DMVKRNKSGEPLLKDGNIQVLTSHTLKPVRFLNCLLE 509 (511)
Q Consensus 473 ~m~~~D~~~~~~~~~g~p~~~t~HT~npVP~ii~g~~ 509 (511)
..+.||++|||||++++.
T Consensus 346 -------------------~~~~Ht~~pVP~ii~g~~ 363 (396)
T TIGR00306 346 -------------------EVKDHSADPVPIVIVGPG 363 (396)
T ss_pred -------------------CCCCCCCCCeeEEEEeCC
Confidence 257899999999999874
No 10
>PRK04200 cofactor-independent phosphoglycerate mutase; Provisional
Probab=99.92 E-value=6.9e-25 Score=231.32 Aligned_cols=155 Identities=26% Similarity=0.274 Sum_probs=131.7
Q ss_pred cccccHHHHHHhCCCcEEeeecCCccccEEEeeCCcccccccCCCceEEeecCCccccccC--------------Cc---
Q 010407 333 EIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNV--------------QP--- 395 (511)
Q Consensus 333 ~~~~tl~evLs~~Gl~q~riAEteKyahvt~FfnGG~~~~~~~~ge~r~li~sp~V~tyDl--------------~p--- 395 (511)
++.+...++|.+|++|+.|.++++..+|..|+|++|+.+.+++ +++|+..+...|+.+++ .|
T Consensus 185 ~~~~~~~~~L~~HPvN~~R~~~G~~paN~iwlwG~G~~p~~p~-f~e~~gl~~a~ia~~~l~kGla~~~Gm~~~~vpgat 263 (395)
T PRK04200 185 ELMLSSQEILEDHPVNLKRIEEGKLPANSIWLWGQGYAPKMPS-FKEKYGLKGAVISAVDLLKGIGIYAGLDVIEVPGAT 263 (395)
T ss_pred HHHHHHHHHHHhCcccHHHHHcCCCCceEEEecCCCCCCCCCC-HHHhcCCceEEEeccHHHHHHHHHcCCccccCCCcc
Confidence 3456778999999999999999999999999999999888864 88887665555555665 12
Q ss_pred ---CCCHHHHHHHHHHHHHcCCCcEEEEecCCcccCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHh-cCCEEEEeCCCCC
Q 010407 396 ---KMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEA-VKIIIDAIEK-VGGIYLVTADHGN 470 (511)
Q Consensus 396 ---emsa~ev~d~~i~al~~~~yDfV~vnfanpDmvGHtgd~ea~~kAIE~vD~~-Lg~ll~al~~-~g~~lIITADHGN 470 (511)
+.+..+.+++++++++ +||||++|++++||+||+||+++++++||++|++ +++|++++++ .+++++|||||||
T Consensus 264 g~~dt~~~~k~~~a~~~l~--~~DfV~vh~~~~D~aGH~gd~~~kv~aiE~lD~~~~~~ll~al~~~~~~~l~it~DH~t 341 (395)
T PRK04200 264 GYLDTNYEGKAEAALEALK--THDFVFVHVEAPDEAGHEGDLEAKIKAIEDIDERVVGPILEALKKYEDYRILVLPDHPT 341 (395)
T ss_pred cccccchHHHHHHHHHHhc--cCCEEEEEecCcchhhccCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCCEEEEeccCCc
Confidence 2466678899999995 5999999999999999999999999999999998 5589999964 4679999999999
Q ss_pred hhhhhccCCCCCCcccCCCcccCCCCCCCCceEEEEcCC
Q 010407 471 AEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVRFLNCLLE 509 (511)
Q Consensus 471 ~E~m~~~D~~~~~~~~~g~p~~~t~HT~npVP~ii~g~~ 509 (511)
+ ++.++||.||||||++++.
T Consensus 342 p-------------------~~~~~Ht~~pVP~ii~g~~ 361 (395)
T PRK04200 342 P-------------------IELKTHTADPVPFLIYGEG 361 (395)
T ss_pred C-------------------CCCCccCCCCEeEEEEcCC
Confidence 4 3578999999999999864
No 11
>TIGR02535 hyp_Hser_kinase proposed homoserine kinase. The proposal that this family encodes a kinase is based on analogy to phosphomutases which are intramolecular phosphotransferases. A mutase active site could evolve to bring together homoserine and a phosphate donor such as phosphoenolpyruvate resulting in a kinase activity.
Probab=99.91 E-value=1.9e-24 Score=228.07 Aligned_cols=155 Identities=23% Similarity=0.256 Sum_probs=131.2
Q ss_pred cccccHHHHHHhCCCcEEeeecCCccccEEEeeCCcccccccCCCceEEeecCCccccccC--------------Cc---
Q 010407 333 EIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNV--------------QP--- 395 (511)
Q Consensus 333 ~~~~tl~evLs~~Gl~q~riAEteKyahvt~FfnGG~~~~~~~~ge~r~li~sp~V~tyDl--------------~p--- 395 (511)
++.+...++|.+|++|+.|.++++..+|..|+|++|+.+.+++ +++++......|+.+++ .|
T Consensus 186 ~~~~~~~~lL~~HPvN~~R~a~G~~paN~iwlwG~G~~p~~p~-f~e~~gl~~a~ia~~~l~kGla~~~Gm~~~~vpgat 264 (396)
T TIGR02535 186 ELILASAEILKNHPVNLKRQSAGKDPANMIWLWGSGGAPKMPT-FSERYGIRGAMISAVDLLKGIGIYAGLERIEVEGAT 264 (396)
T ss_pred HHHHHHHHHHHhCcchHHHHhcCCCCceEEEecCCCCCCCCCC-HHHhcCCceEEEeccHHHHHHHHHcCCccccCCccc
Confidence 3567778999999999999999999999999999999888864 78777665555566665 12
Q ss_pred ---CCCHHHHHHHHHHHHHcCCCcEEEEecCCcccCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHhcCC--EEEEeCCCC
Q 010407 396 ---KMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEA-VKIIIDAIEKVGG--IYLVTADHG 469 (511)
Q Consensus 396 ---emsa~ev~d~~i~al~~~~yDfV~vnfanpDmvGHtgd~ea~~kAIE~vD~~-Lg~ll~al~~~g~--~lIITADHG 469 (511)
..+.++.+++++++++ +||||++||+++||+||+||+++++++||++|++ +++++++++..++ +++||||||
T Consensus 265 g~~dt~~~~k~~~~~~~l~--~~Dfv~vh~~~~D~aGH~gd~~~kv~aIE~lD~~~~~~ll~al~~~~~~~~~~vt~DH~ 342 (396)
T TIGR02535 265 GYLDTNYEGKVRAALEALE--TYDFVVVHVEAPDEAGHEGDLEAKIKAIELIDSRIVGPLLEALSDRDEPFRILVLPDHP 342 (396)
T ss_pred cccccchHHHHHHHHHHHh--hCCEEEEEeCCCChhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeeCc
Confidence 2355677899999995 4999999999999999999999999999999996 5689999976544 899999999
Q ss_pred ChhhhhccCCCCCCcccCCCcccCCCCCCCCceEEEEcCC
Q 010407 470 NAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVRFLNCLLE 509 (511)
Q Consensus 470 N~E~m~~~D~~~~~~~~~g~p~~~t~HT~npVP~ii~g~~ 509 (511)
|+ ++.++||.||||||++|+.
T Consensus 343 tp-------------------~~~~~Ht~~pVP~ii~g~~ 363 (396)
T TIGR02535 343 TP-------------------LELKTHTAEPVPFLLYGKG 363 (396)
T ss_pred cC-------------------CCCCccCCCCEeEEEEeCC
Confidence 94 3578999999999999864
No 12
>COG3635 Predicted phosphoglycerate mutase, AP superfamily [Carbohydrate transport and metabolism]
Probab=99.87 E-value=5e-22 Score=204.92 Aligned_cols=152 Identities=19% Similarity=0.174 Sum_probs=134.9
Q ss_pred cccHHHHHHhCCCcEEeeecCCccccEEEeeCCcccccccCCCceEEeecCCccccccC--------------------C
Q 010407 335 DRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNV--------------------Q 394 (511)
Q Consensus 335 ~~tl~evLs~~Gl~q~riAEteKyahvt~FfnGG~~~~~~~~ge~r~li~sp~V~tyDl--------------------~ 394 (511)
.....|+|.+|++|..|..+++.+||..|+|++|..+.+++ +++|+.++..+|+.+++ .
T Consensus 200 ~~~~~eiL~~hpvN~~R~~~Gk~paN~iL~rgag~~P~ip~-F~e~yglk~a~Ia~~~l~KGlar~~GmDvi~vegatG~ 278 (408)
T COG3635 200 VLKAYEILRDHPVNLKRRKQGKLPANAILLRGAGRYPKIPS-FQERYGLKGACIAAVPLIKGLARLVGMDVIEVEGATGY 278 (408)
T ss_pred HHHHHHHHhcCcccHHHHhcCCCCccEEEEcCCCCCCCCCC-HhHhhCcceEEEEecHHHHhHHHHhCCceeecccccCc
Confidence 34458999999999999999999999999999999999975 99999998888888888 2
Q ss_pred cCCCHHHHHHHHHHHHHcCCCcEEEEecCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEeCCCCChhhh
Q 010407 395 PKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDM 474 (511)
Q Consensus 395 pemsa~ev~d~~i~al~~~~yDfV~vnfanpDmvGHtgd~ea~~kAIE~vD~~Lg~ll~al~~~g~~lIITADHGN~E~m 474 (511)
.+.+..+.+++++++++ +||||++|+..+|.+||.||++.++++||.+|+.++.+++ +......++||+||.+|.
T Consensus 279 ~dtn~~~k~k~a~eal~--~yDfv~vhik~tDeagHdG~~e~Kv~~IE~iD~~i~pll~-~~~~~~~i~vt~DHsTPv-- 353 (408)
T COG3635 279 IDTNYRGKAKAAIEALK--EYDFVFVHIKATDEAGHDGDFEGKVRVIEDIDKAIGPLLD-LDLDEDVIAVTGDHSTPV-- 353 (408)
T ss_pred cCccHHHHHHHHHHHHh--hCCEEEEEeccCccccCCCCHHHhHHHHHHHHHHhhhhhc-cccCCcEEEEeCCCCCcc--
Confidence 23566788999999995 5999999999999999999999999999999999999998 554457999999999973
Q ss_pred hccCCCCCCcccCCCcccCCCCCCCCceEEEEcCC
Q 010407 475 VKRNKSGEPLLKDGNIQVLTSHTLKPVRFLNCLLE 509 (511)
Q Consensus 475 ~~~D~~~~~~~~~g~p~~~t~HT~npVP~ii~g~~ 509 (511)
+.+.||.+|||+++++++
T Consensus 354 -----------------~vk~Hs~dPVPili~~~~ 371 (408)
T COG3635 354 -----------------SVKDHSGDPVPILIYGPY 371 (408)
T ss_pred -----------------cccccCCCCccEEEecCC
Confidence 357899999999999876
No 13
>PRK04135 cofactor-independent phosphoglycerate mutase; Provisional
Probab=99.84 E-value=7.7e-21 Score=199.84 Aligned_cols=141 Identities=17% Similarity=0.243 Sum_probs=122.1
Q ss_pred cccccHHHHHHhCCCcEEeeecCCccccEEEeeCCcccccccCCCceEEeecCCccccccC-------------CcCCCH
Q 010407 333 EIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNV-------------QPKMKA 399 (511)
Q Consensus 333 ~~~~tl~evLs~~Gl~q~riAEteKyahvt~FfnGG~~~~~~~~ge~r~li~sp~V~tyDl-------------~pemsa 399 (511)
++.....|+|++|+ .||..|+|++|+.+.+|+ +++|+.++...|+.+|+ .|..+.
T Consensus 199 ~~~~~~~eiL~~hp-----------pAN~il~rg~G~~p~lp~-F~e~~Glkga~Ia~~~l~kGi~~~~Gm~~i~~ga~~ 266 (395)
T PRK04135 199 EFLKRAAEVLKDEP-----------KANFALLRGFSKKPDFPS-FEEVYKLKAAAIASYPMYRGLAKLVGMDVLPTGQTL 266 (395)
T ss_pred HHHHHHHHHHhcCC-----------cccEEEecCCCCCCCCCC-HHHHhCCceEEEehhHHHHHHHHHcCCeecCCCCCH
Confidence 34556688899988 899999999999999974 99999888877888887 344578
Q ss_pred HHHHHHHHHHHHcCCCcEEEEecCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEeCCCCChhhhhccCC
Q 010407 400 LEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNK 479 (511)
Q Consensus 400 ~ev~d~~i~al~~~~yDfV~vnfanpDmvGHtgd~ea~~kAIE~vD~~Lg~ll~al~~~g~~lIITADHGN~E~m~~~D~ 479 (511)
++.+++++++++ +||||++|++.||++||.+|+++++++||++|++|..|+ .++ +.+|+|||||+|++.
T Consensus 267 ~~k~~~a~~~l~--~~DfV~vhvk~~DeaGH~gd~~~Kv~~IE~iD~~l~~ll-~l~--~~~ivVT~DH~TP~~------ 335 (395)
T PRK04135 267 EDEIKTLKENWN--DYDFFFLHVKKTDSYGEDGNFEEKVKVIEEVDALLPEIL-ALK--PDVLVITGDHSTPAV------ 335 (395)
T ss_pred HHHHHHHHHHHh--cCCEEEEEeccCchhhccCCHHHHHHHHHHHHHHHHHHh-cCC--CcEEEEeCCCCCccc------
Confidence 889999999884 499999999999999999999999999999999999888 553 349999999999863
Q ss_pred CCCCcccCCCcccCCCCCCCCceEEEEcCC
Q 010407 480 SGEPLLKDGNIQVLTSHTLKPVRFLNCLLE 509 (511)
Q Consensus 480 ~~~~~~~~g~p~~~t~HT~npVP~ii~g~~ 509 (511)
.+.||.+||||+++|+.
T Consensus 336 -------------~~~Hs~dPVP~li~g~~ 352 (395)
T PRK04135 336 -------------LKGHSWHPVPLLLYSKY 352 (395)
T ss_pred -------------ccccCCCCEeEEEEcCC
Confidence 47899999999999974
No 14
>TIGR01696 deoB phosphopentomutase. This protein is involved in the purine and pyrimidine salvage pathway. It catalyzes the conversion of D-ribose 1-phosphate to D-ribose 5-phosphate and the conversion of 2-deoxy-D-ribose 1-phosphate to 2-deoxy-D-ribose 5-phosphate. The seed members of this protein are characterized deoB proteins from E.Coli and Bacillus. This model matches pfam01676 for Metalloenzyme superfamily.
Probab=99.79 E-value=1.6e-18 Score=181.60 Aligned_cols=131 Identities=18% Similarity=0.184 Sum_probs=109.9
Q ss_pred cccHHHHHHhCCCcEEeeecCCccccEEEeeCCcccccccCCCceEEeecCCccccccCCcCCCHHHHHHHHHHHHHcCC
Q 010407 335 DRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRR 414 (511)
Q Consensus 335 ~~tl~evLs~~Gl~q~riAEteKyahvt~FfnGG~~~~~~~~ge~r~li~sp~V~tyDl~pemsa~ev~d~~i~al~~~~ 414 (511)
..|+.|.|+++|+.+..| |+..+.| .+.. +..+- +.-+..+.++++++++++++
T Consensus 216 ~pTvld~l~~aG~~V~~V--------------Gki~DiF--~g~G--lt~a~--------~~~~~~~~~~~~l~aL~~~~ 269 (381)
T TIGR01696 216 APTVLQKLKDEGHDVISI--------------GKIADIY--DGEG--ITKKV--------RTTSNMDGMDATIKEMKEDF 269 (381)
T ss_pred CCCHHHHHHHCCCeEEEE--------------ccHHhEe--cCCC--ccccc--------CCCCHHHHHHHHHHHHhcCC
Confidence 468899999999999999 7777888 4432 22211 33456789999999998877
Q ss_pred CcEEEEecCCccc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEeCCCCChhhhhccCCCCCCcccCCCcccC
Q 010407 415 FHQVRVNLPNSDM-VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVL 493 (511)
Q Consensus 415 yDfV~vnfanpDm-vGHtgd~ea~~kAIE~vD~~Lg~ll~al~~~g~~lIITADHGN~E~m~~~D~~~~~~~~~g~p~~~ 493 (511)
+|||++||.++|| +||+++++++.++||.+|++|++|++++++ +..||||||||| |++ .++
T Consensus 270 ~~lif~nl~d~D~~~GH~~d~~~y~~ale~vD~~Lg~ll~~L~~-~tllIITADHG~-------Dp~----------~~~ 331 (381)
T TIGR01696 270 TGISFTNLVDFDALWGHRRDVAGYAAALELFDRRLPELFSLLRE-DDLLIITADHGN-------DPT----------WTG 331 (381)
T ss_pred CCEEEEEeCCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHhcc-CCEEEEECCCCC-------CCC----------CCC
Confidence 9999999999998 799999999999999999999999999975 569999999999 332 146
Q ss_pred CCCCCCCceEEEEcCC
Q 010407 494 TSHTLKPVRFLNCLLE 509 (511)
Q Consensus 494 t~HT~npVP~ii~g~~ 509 (511)
+.||+++||||++++.
T Consensus 332 t~HTre~VPlIi~gp~ 347 (381)
T TIGR01696 332 TDHTREYIPVLVYSPK 347 (381)
T ss_pred CcCCCCCEeEEEEECC
Confidence 8999999999999874
No 15
>PRK12383 putative mutase; Provisional
Probab=99.77 E-value=2.4e-18 Score=181.77 Aligned_cols=130 Identities=18% Similarity=0.264 Sum_probs=106.0
Q ss_pred ccHHHHHHhCCCcEEeeecCCccccEEEeeCCcccccccCCCceEEeecCCccccccCCcCCCHHHHHHHHHHHHHcCCC
Q 010407 336 RTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRF 415 (511)
Q Consensus 336 ~tl~evLs~~Gl~q~riAEteKyahvt~FfnGG~~~~~~~~ge~r~li~sp~V~tyDl~pemsa~ev~d~~i~al~~~~y 415 (511)
.++.+.++++|++...| |.....+ +.+ ....| .+.++..+.+++++++++++++
T Consensus 234 ~~v~~~l~~~G~~v~~V--------------GKi~Di~--s~~--------G~t~~--~~~~~t~~~~~~~l~aL~~~~~ 287 (406)
T PRK12383 234 VQVPQKLYEAGVPVVLV--------------GKVADIV--NNP--------YGVSW--QNLVDTQRVMDITLDEFNTHPT 287 (406)
T ss_pred chhhhHHHHcCCCEEEE--------------EEhHHee--ccC--------Ccccc--cccCCHHHHHHHHHHHHhcCCC
Confidence 67788999999999999 4444433 211 11111 1345666899999999988779
Q ss_pred cEEEEecCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEeCCCCChhhhhccCCCCCCcccCCCcccCCC
Q 010407 416 HQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTS 495 (511)
Q Consensus 416 DfV~vnfanpDmvGHtgd~ea~~kAIE~vD~~Lg~ll~al~~~g~~lIITADHGN~E~m~~~D~~~~~~~~~g~p~~~t~ 495 (511)
|||++|+.++|++||+++++++.++||.+|++|++|++++++ +..|||||||||++.+ +++.
T Consensus 288 dlvfvnl~~~D~~GH~~d~~~y~~aiE~iD~~lg~ll~~L~~-~~lliITaDHG~d~~~-----------------~~t~ 349 (406)
T PRK12383 288 AFICTNIQETDLAGHAEDVARYAERLEVVDRNLARLLEAMTP-DDCLVVMADHGNDPTI-----------------GHSH 349 (406)
T ss_pred CEEEEeccCCccccccCCHHHHHHHHHHHHHHHHHHHHHhcc-CCEEEEEcCCCCCCCC-----------------CCcC
Confidence 999999999999999999999999999999999999999975 6699999999994321 4789
Q ss_pred CCCCCceEEEEcCC
Q 010407 496 HTLKPVRFLNCLLE 509 (511)
Q Consensus 496 HT~npVP~ii~g~~ 509 (511)
||++|||||++++.
T Consensus 350 HTre~VPlLi~gp~ 363 (406)
T PRK12383 350 HTREVVPLLVYQKG 363 (406)
T ss_pred CCCcceEEEEEECC
Confidence 99999999999875
No 16
>COG1015 DeoB Phosphopentomutase [Carbohydrate transport and metabolism]
Probab=99.75 E-value=7.6e-18 Score=173.70 Aligned_cols=132 Identities=20% Similarity=0.216 Sum_probs=111.6
Q ss_pred cccHHHHHHhCCCcEEeeecCCccccEEEeeCCcccccccCCCceEEeecCCccccccCCcCCCHHHHHHHHHHHHHcCC
Q 010407 335 DRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRR 414 (511)
Q Consensus 335 ~~tl~evLs~~Gl~q~riAEteKyahvt~FfnGG~~~~~~~~ge~r~li~sp~V~tyDl~pemsa~ev~d~~i~al~~~~ 414 (511)
..|+.+.|.++|..+++| |++.+.| .++. +..+ + +.-+..+.+|++++.+++..
T Consensus 226 ~~tvl~~L~e~g~~vi~I--------------GKI~DI~--~~~G---it~~-~------~~~~n~~~~d~tl~~~~~~~ 279 (397)
T COG1015 226 APTVLDKLKEAGRPVIAI--------------GKIADIY--AGQG---ITEK-V------KAVSNMDGMDVTLEEMKTAE 279 (397)
T ss_pred hhhHHHHHHHcCCceEEE--------------eeHHhhh--cccc---cccc-c------cCCCcHHHHHHHHHHHhcCC
Confidence 368889999999999999 9999999 5442 2111 1 12355679999999998534
Q ss_pred -CcEEEEecCCccc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEeCCCCChhhhhccCCCCCCcccCCCccc
Q 010407 415 -FHQVRVNLPNSDM-VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQV 492 (511)
Q Consensus 415 -yDfV~vnfanpDm-vGHtgd~ea~~kAIE~vD~~Lg~ll~al~~~g~~lIITADHGN~E~m~~~D~~~~~~~~~g~p~~ 492 (511)
-+|+|+|+..+|+ .||++|..+|.+|||.+|+.|.+|++.|++ ++.||||||||| |||. +
T Consensus 280 ~~~~vFtNlVdfD~~yGHRrDv~gYa~aLe~FD~rL~e~~~~l~e-dDlLiiTADHGn-------DPT~----------~ 341 (397)
T COG1015 280 FNGLVFTNLVDFDSLYGHRRDVAGYAAALEEFDRRLPELIENLRE-DDLLIITADHGN-------DPTW----------G 341 (397)
T ss_pred CCcEEEEeeeecccccccccchHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEecCCCC-------CCCC----------C
Confidence 4599999999995 899999999999999999999999999998 559999999999 8884 7
Q ss_pred CCCCCCCCceEEEEcCCC
Q 010407 493 LTSHTLKPVRFLNCLLEM 510 (511)
Q Consensus 493 ~t~HT~npVP~ii~g~~~ 510 (511)
+|.||++.||+|+|++.+
T Consensus 342 gTdHTRE~iPvl~y~~~~ 359 (397)
T COG1015 342 GTDHTREYIPVLVYGPGL 359 (397)
T ss_pred CCCccccccceEEEcCCc
Confidence 999999999999999864
No 17
>PRK05362 phosphopentomutase; Provisional
Probab=99.72 E-value=5.3e-17 Score=171.31 Aligned_cols=131 Identities=21% Similarity=0.213 Sum_probs=107.0
Q ss_pred cccHHHHHHhCCCcEEeeecCCccccEEEeeCCcccccccCCCceEEeecCCccccccCCcCCCHHHHHHHHHHHHH-cC
Q 010407 335 DRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAIL-SR 413 (511)
Q Consensus 335 ~~tl~evLs~~Gl~q~riAEteKyahvt~FfnGG~~~~~~~~ge~r~li~sp~V~tyDl~pemsa~ev~d~~i~al~-~~ 413 (511)
..|+.+.|+++|++...| |+..+.| .+.. +...- +.-+..+++++++++++ ++
T Consensus 223 ~~Tl~d~L~~aG~~v~~V--------------Gki~DiF--a~~G--~t~~~--------~~~~~~~~~~~ale~L~~~~ 276 (394)
T PRK05362 223 APTVLDKLKEAGGEVIAV--------------GKIADIF--AGQG--ITEKV--------KTKSNMDGMDATIEEMKEAG 276 (394)
T ss_pred CCCHHHHHHHCCCeEEEE--------------Eehhhcc--cCCC--ccccc--------CCCCHHHHHHHHHHHHHhCC
Confidence 468889999999999999 6666667 3321 11110 12244589999999998 77
Q ss_pred CCcEEEEecCCcccC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEeCCCCChhhhhccCCCCCCcccCCCccc
Q 010407 414 RFHQVRVNLPNSDMV-GHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQV 492 (511)
Q Consensus 414 ~yDfV~vnfanpDmv-GHtgd~ea~~kAIE~vD~~Lg~ll~al~~~g~~lIITADHGN~E~m~~~D~~~~~~~~~g~p~~ 492 (511)
+++|+++||.++||+ ||+++++++.++||.+|++|++|++++++ +..||||||||| |++ .+
T Consensus 277 ~~~fvfvn~~~~D~~~GH~~~~~~y~~ale~~D~~lg~ll~~L~~-~tlliiTaDHG~-------d~t----------~~ 338 (394)
T PRK05362 277 DNGLVFTNLVDFDSLYGHRRDVAGYAAALEEFDARLPELLAALKE-DDLLIITADHGN-------DPT----------WP 338 (394)
T ss_pred CCcEEEEecccCccccCCcCCHHHHHHHHHHHHHHHHHHHHHhcc-CCEEEEeCCCCC-------CCC----------CC
Confidence 899999999999996 99999999999999999999999999976 579999999999 332 14
Q ss_pred CCCCCCCCceEEEEcCC
Q 010407 493 LTSHTLKPVRFLNCLLE 509 (511)
Q Consensus 493 ~t~HT~npVP~ii~g~~ 509 (511)
.+.||+++||||++++.
T Consensus 339 gt~HT~e~VPlIi~gp~ 355 (394)
T PRK05362 339 GTDHTREYVPLLVYGPK 355 (394)
T ss_pred CCCCCCCceeEEEEECC
Confidence 68999999999999874
No 18
>cd00016 alkPPc Alkaline phosphatase homologues; alkaline phosphatases are non-specific phosphomonoesterases that catalyze the hydrolysis reaction via a phosphoseryl intermediate to produce inorganic phosphate and the corresponding alcohol, optimally at high pH. Alkaline phosphatase exists as a dimer, each monomer binding 2 zinc atoms and one magnesium atom, which are essential for enzymatic activity.
Probab=99.05 E-value=1.5e-09 Score=115.05 Aligned_cols=112 Identities=21% Similarity=0.219 Sum_probs=84.1
Q ss_pred CHHHHHHHHHHHHHcCCCc-EEEEecCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-hcCCEEEEeCCCCChhhhh
Q 010407 398 KALEIAERAKKAILSRRFH-QVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIE-KVGGIYLVTADHGNAEDMV 475 (511)
Q Consensus 398 sa~ev~d~~i~al~~~~yD-fV~vnfanpDmvGHtgd~ea~~kAIE~vD~~Lg~ll~al~-~~g~~lIITADHGN~E~m~ 475 (511)
+..+.++++++.|++.+-. |+++++..+|+.||..+.+.++++++++|++|+.+++.++ ..+..||||||||+.-.+.
T Consensus 232 sL~emt~~al~~L~~~~~gFfl~ve~~~iD~~gH~~d~~~~~~~l~~~D~av~~~l~~l~~~~dTLiIvTADHg~~~~~~ 311 (384)
T cd00016 232 SLAEMTEKAIDVLSKNPNGFFLMVEGGRIDHAHHANDAAGALSETLAFDDAVEAALDFAKKDGDTLVVVTADHSHGGTIL 311 (384)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEEeCCCCCcccCCCcHHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCCcccc
Confidence 4457899999999754334 8888989999999999999999999999999999999997 3457999999999964332
Q ss_pred ccCCCCCCcc---------cCCCcc-------cCCCCCCCCceEEEEcCC
Q 010407 476 KRNKSGEPLL---------KDGNIQ-------VLTSHTLKPVRFLNCLLE 509 (511)
Q Consensus 476 ~~D~~~~~~~---------~~g~p~-------~~t~HT~npVP~ii~g~~ 509 (511)
-....+++.. .++.|. ....||.++||++.+|+.
T Consensus 312 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~Htg~~Vpv~a~Gp~ 361 (384)
T cd00016 312 GYAGRGNPILGLADAPELDVDGLPYTTLTYANTTGTHGGEDVPVFAYGPG 361 (384)
T ss_pred CCCCCCCcccccccccccccCCCCceEEEecCCCCCCcCceeeEEeecCC
Confidence 1001111111 122221 267899999999999974
No 19
>KOG2645 consensus Type I phosphodiesterase/nucleotide pyrophosphatase [General function prediction only]
Probab=98.52 E-value=3.9e-07 Score=97.55 Aligned_cols=117 Identities=19% Similarity=0.205 Sum_probs=84.2
Q ss_pred CCCcEEeeecCCccccEEEeeCCcccccccCCCceEEeecCCccccccCCcCCCHHHHHHHHHH--HHHcCCCcEEEEec
Q 010407 345 NGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKK--AILSRRFHQVRVNL 422 (511)
Q Consensus 345 ~Gl~q~riAEteKyahvt~FfnGG~~~~~~~~ge~r~li~sp~V~tyDl~pemsa~ev~d~~i~--al~~~~yDfV~vnf 422 (511)
.++-+. |..+...-.|+||.|.. ..+ .+- .+.+. ..|.. +.+.++..+.+++ +-++...||+.+++
T Consensus 115 ePiW~t--~~~~~~kaa~~~wpg~~-v~~--~~~----~~~~~-~~~n~--~~~~~~~~~~i~~~~~~~~e~p~l~~~Y~ 182 (418)
T KOG2645|consen 115 EPIWVT--ARKQGRKVATFFWPGCE-VEI--HGY----IPDPY-DIYNQ--SVPLEERADTVLDLDLPEKERPDLLLLYV 182 (418)
T ss_pred Ccchhh--hhhcCCceeEEecCCcc-ccc--ccc----ccccc-ccccc--cccHHHHHHHHhccccccccCCCceEEec
Confidence 444444 33344666799999986 444 232 33321 22332 3455566776666 22456799999999
Q ss_pred CCcccCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHhcC----CEEEEeCCCCChhh
Q 010407 423 PNSDMVGHTG--DIEATVVACKAADEAVKIIIDAIEKVG----GIYLVTADHGNAED 473 (511)
Q Consensus 423 anpDmvGHtg--d~ea~~kAIE~vD~~Lg~ll~al~~~g----~~lIITADHGN~E~ 473 (511)
++||.+||.. +.+...+++++||..+++|++.+++++ .++||+||||+...
T Consensus 183 ~~pD~~gh~~Gp~~~~v~~~l~~vD~~i~~L~~~Lk~r~L~~~vNvIi~SDHGM~~~ 239 (418)
T KOG2645|consen 183 EEPDHSGHRYGPDSPEVEKALKEVDDFIGYLIKGLKDRNLFEDVNVIIVSDHGMTDI 239 (418)
T ss_pred cCCCccccccCCCcHHHHHHHHHHHHHHHHHHHHHHHccccccceEEEeecCCcccc
Confidence 9999999974 456689999999999999999999887 49999999999765
No 20
>PF01663 Phosphodiest: Type I phosphodiesterase / nucleotide pyrophosphatase; InterPro: IPR002591 This family consists of phosphodiesterases, including human plasma-cell membrane glycoprotein PC-1 / alkaline phosphodiesterase I / nucleotide pyrophosphatase (nppase). These enzymes catalyse the cleavage of phosphodiester and phosphosulphate bonds in NAD, deoxynucleotides and nucleotide sugars []. Another member of this family is ATX an autotaxin, tumor cell motility-stimulating protein which exhibits type I phosphodiesterases activity []. The alignment encompasses the active site [, ]. Also present within this family is 60 kDa Ca2+-ATPase from Myroides odoratus []. This signature also hits a number of ethanolamine phosphate transferase involved in glycosylphosphatidylinositol-anchor biosynthesis.; GO: 0003824 catalytic activity; PDB: 2XRG_A 2XR9_A 3T02_A 3T01_A 3SZZ_A 3SZY_A 3T00_A 3NKM_A 3NKN_A 3NKR_A ....
Probab=98.32 E-value=6.6e-07 Score=90.90 Aligned_cols=69 Identities=28% Similarity=0.397 Sum_probs=55.4
Q ss_pred HHHHHHHcCCCcEEEEecCCcccCCCC-C-CHHHHHHHHHHHHHHHHHHHHHHHhc----CCEEEEeCCCCChhh
Q 010407 405 RAKKAILSRRFHQVRVNLPNSDMVGHT-G-DIEATVVACKAADEAVKIIIDAIEKV----GGIYLVTADHGNAED 473 (511)
Q Consensus 405 ~~i~al~~~~yDfV~vnfanpDmvGHt-g-d~ea~~kAIE~vD~~Lg~ll~al~~~----g~~lIITADHGN~E~ 473 (511)
.+...+++.++||++++|.++|.+||. | +.+++.++++.+|++|++|++++++. +.+|+||||||....
T Consensus 174 ~~~~l~~~~~pdl~~~~~~~~D~~~H~~g~~s~~~~~~~~~~D~~ig~l~~~l~~~~~~~~~~iiv~SDHG~~~~ 248 (365)
T PF01663_consen 174 AAEYLIQKERPDLIFVYFPEPDHIGHRYGPDSPEIEDAYRRIDQAIGRLLEALDENGLLEDTNIIVTSDHGMTPV 248 (365)
T ss_dssp HHHHHHHTTTESEEEEEEECCHHHHHHH-TTSHHHHHHHHHHHHHHHHHHHHHHHTT-TTTEEEEEEES---EEE
T ss_pred HHHHHHhhCCCCEEEEEecCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCCCceEEEEEccCccccc
Confidence 333446677899999999999999995 3 57789999999999999999999886 259999999999755
No 21
>TIGR02335 hydr_PhnA phosphonoacetate hydrolase. This family consists of examples of phosphonoacetate hydrolase, an enzyme specific for the cleavage of the C-P bond in phosphonoacetate. Phosphonates are organic compounds with a direct C-P bond that is far less labile that the C-O-P bonds of phosphate attachment sites. Phosphonates may be degraded for phosphorus and energy by broad spectrum C-P lyase encoded by large operon or by specific enzymes for some of the more common phosphonates in nature. This family represents an enzyme from the latter category. It may be found encoded near genes for phosphonate transport and for pther specific phosphonatases.
Probab=98.28 E-value=1e-05 Score=86.69 Aligned_cols=65 Identities=25% Similarity=0.276 Sum_probs=56.1
Q ss_pred HHHHHHHHHHcCCCcEEEEecCCcccCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEeCCCCChh
Q 010407 402 IAERAKKAILSRRFHQVRVNLPNSDMVGHTG--DIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAE 472 (511)
Q Consensus 402 v~d~~i~al~~~~yDfV~vnfanpDmvGHtg--d~ea~~kAIE~vD~~Lg~ll~al~~~g~~lIITADHGN~E 472 (511)
+++.+++++++.+.||++ +..+|.+||.- ++++..++++++|+.|++|++. |.+|+||||||+.+
T Consensus 176 ~~~~a~~~l~~~~pdlly--l~~~D~~gH~~Gp~S~e~~~~~~~lD~~l~~L~~~----~~~vvvtaDHG~~~ 242 (408)
T TIGR02335 176 VLDAGLSLLTNERPDLMY--LSTSDYVQHKHAPGEPESNAFYAAMDSRFKRYHEQ----GAIVAITADHGMNA 242 (408)
T ss_pred HHHHHHHHHhccCCcEEE--ecCcCccccccCCCCHHHHHHHHHHHHHHHHHHHC----CCEEEEECCCCCcc
Confidence 478888888888899976 46999999983 6889999999999999998763 78999999999964
No 22
>PRK10518 alkaline phosphatase; Provisional
Probab=97.92 E-value=7.1e-05 Score=81.62 Aligned_cols=111 Identities=19% Similarity=0.216 Sum_probs=84.7
Q ss_pred CHHHHHHHHHHHHHcCCCc-EEEEecCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc-CCEEEEeCCCCChhhhh
Q 010407 398 KALEIAERAKKAILSRRFH-QVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKV-GGIYLVTADHGNAEDMV 475 (511)
Q Consensus 398 sa~ev~d~~i~al~~~~yD-fV~vnfanpDmvGHtgd~ea~~kAIE~vD~~Lg~ll~al~~~-g~~lIITADHGN~E~m~ 475 (511)
+..+.++++|+.|++.+-. |.+|+=...|..+|..|....+..+-++|+.|+..++.++++ +.+|||||||++.-.+.
T Consensus 325 sLaeMT~kAI~~Lskn~~GFFLmVEGg~ID~a~H~nda~~~i~E~~~fD~AV~~A~~~~~~~~dTLVIVTADH~h~~~i~ 404 (476)
T PRK10518 325 TLAQMTDKAIDLLKKNEKGFFLQVEGASIDKQDHAANPCGQIGETVDLDEAVQKALEFARKDGNTLVIVTADHAHSSQII 404 (476)
T ss_pred CHHHHHHHHHHHhccCCCceEEEeeccccchhhccCCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEccCCCcceec
Confidence 4568899999999654333 778888999999999999999999999999999999999884 46899999999987665
Q ss_pred ccCCCCCCc-----c-cCCCc---------ccCCCCCCCCceEEEEcCC
Q 010407 476 KRNKSGEPL-----L-KDGNI---------QVLTSHTLKPVRFLNCLLE 509 (511)
Q Consensus 476 ~~D~~~~~~-----~-~~g~p---------~~~t~HT~npVP~ii~g~~ 509 (511)
-. ..++|- . .||.| -....||.+.||+..+|+.
T Consensus 405 g~-~~~~~g~~~~~~~~dg~~~~l~y~~g~g~s~~HtG~dV~v~A~GP~ 452 (476)
T PRK10518 405 AP-DAKAPGLTQALNTKDGAVMVVSYGNSEEDSQEHTGTQLRIAAYGPH 452 (476)
T ss_pred CC-CCCCCCcccccccCCCCeeEEEeccCCCCCcCcCCceeEEEecCCc
Confidence 21 111120 0 13332 0145899999999999874
No 23
>KOG2126 consensus Glycosylphosphatidylinositol anchor synthesis protein [Signal transduction mechanisms]
Probab=97.68 E-value=2.9e-05 Score=88.45 Aligned_cols=69 Identities=20% Similarity=0.322 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHcCCCcEEEEecCCcccCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEeCCCCC
Q 010407 401 EIAERAKKAILSRRFHQVRVNLPNSDMVGHTG--DIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGN 470 (511)
Q Consensus 401 ev~d~~i~al~~~~yDfV~vnfanpDmvGHtg--d~ea~~kAIE~vD~~Lg~ll~al~~~g~~lIITADHGN 470 (511)
++++++.+.++++++|+++.||=+.|++||.. |-+...+-+++.|++++++++.+++ +..++|.+|||+
T Consensus 193 ~v~~~if~~l~s~dwdVlIAHfLGVDH~GHk~GPdH~~M~~KL~qmD~vI~~ii~~mde-dTlLvVmGDHGM 263 (895)
T KOG2126|consen 193 GVIEKIFKSLNSKDWDVLIAHFLGVDHCGHKHGPDHPEMADKLVQMDRVINEIIKKMDE-DTLLVVMGDHGM 263 (895)
T ss_pred HHHHHhhhhhccCchHHHHHHHhCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHhcc-CeeEEEecCCCC
Confidence 78999999999999999999999999999983 7888899999999999999999986 678999999999
No 24
>PF00884 Sulfatase: Sulfatase; InterPro: IPR000917 Sulphatases 3.1.6. from EC are enzymes that hydrolyze various sulphate esters. The sequence of different types of sulphatases are available and have shown to be structurally related [, , ]; these include: arylsulphatase A 3.1.6.8 from EC (ASA), a lysosomal enzyme which hydrolyses cerebroside sulphate; arylsulphatase B 3.1.6.12 from EC (ASB), which hydrolyses the sulphate ester group from N-acetylgalactosamine 4-sulphate residues of dermatan sulphate; arylsulphatase C (ASD) and E (ASE); steryl-sulphatase 3.1.6.2 from EC (STS), a membrane bound microsomal enzyme which hydrolyses 3-beta-hydroxy steroid sulphates; iduronate 2-sulphatase precursor 3.1.6.13 from EC (IDS), a lysosomal enzyme that hydrolyses the 2-sulphate groups from non-reducing-terminal iduronic acid residues in dermatan sulphate and heparan sulphate; N-acetylgalactosamine-6-sulphatase 3.1.6.4 from EC, which hydrolyses the 6-sulphate groups of the N-acetyl-d-galactosamine 6-sulphate units of chondroitin sulphate and the D-galactose 6-sulphate units of keratan sulphate; glucosamine-6-sulphatase 3.1.6.14 from EC (G6S), which hydrolyses the N-acetyl-D-glucosamine 6-sulphate units of heparan sulphate and keratan sulphate; N-sulphoglucosamine sulphohydrolase 3.10.1.1 from EC (sulphamidase), the lysosomal enzyme that catalyses the hydrolysis of N-sulpho-d-glucosamine into glucosamine and sulphate; sea urchin embryo arylsulphatase 3.1.6.1 from EC; green algae arylsulphatase 3.1.6.1 from EC, which plays an important role in the mineralisation of sulphates; and arylsulphatase 3.1.6.1 from EC from Escherichia coli (aslA), Klebsiella aerogenes (gene atsA) and Pseudomonas aeruginosa (gene atsA). ; GO: 0008484 sulfuric ester hydrolase activity, 0008152 metabolic process; PDB: 1P49_A 1FSU_A 2QZU_A 2W5Q_A 2W5T_A 2W5S_A 2W5R_A 3LXQ_A 1HDH_B 1E33_P ....
Probab=97.65 E-value=0.00046 Score=67.89 Aligned_cols=76 Identities=13% Similarity=0.108 Sum_probs=55.9
Q ss_pred CCCHHHHHHHHHHHH--HcCCCcEEEEecCCcccC--CCC------------------CCHHHHHHHHHHHHHHHHHHHH
Q 010407 396 KMKALEIAERAKKAI--LSRRFHQVRVNLPNSDMV--GHT------------------GDIEATVVACKAADEAVKIIID 453 (511)
Q Consensus 396 emsa~ev~d~~i~al--~~~~yDfV~vnfanpDmv--GHt------------------gd~ea~~kAIE~vD~~Lg~ll~ 453 (511)
.++...+.+.++++| +.++.=|+++++..+-.. ... .....+..+|..+|++|+++++
T Consensus 150 ~~~d~~~~~~~~~~l~~~~~~p~f~~~~~~~~H~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~i~~~D~~l~~~~~ 229 (308)
T PF00884_consen 150 GYSDDALFDYAIDFLLNEDDKPFFLFIHTMGPHGPYPYPPDYAEKFPKFSPDIPDKDREMRNNYLNAIAYVDDQLGRFIE 229 (308)
T ss_dssp CEHHHHHHHHHHHHHHCTTTSSEEEEEEE-TTSSSTCTTCCHHHGGTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhhcccccceeEEeeccccccccccccccccccccccccccchhhhHHHHHHHHHHHHHHhhhhhh
Confidence 456677899999987 345566888887666431 111 1124678899999999999999
Q ss_pred HHHhcC----CEEEEeCCCCCh
Q 010407 454 AIEKVG----GIYLVTADHGNA 471 (511)
Q Consensus 454 al~~~g----~~lIITADHGN~ 471 (511)
.+++.+ ..||||||||..
T Consensus 230 ~l~~~~~~d~TiiiitsDHG~~ 251 (308)
T PF00884_consen 230 YLKEQGLYDNTIIIITSDHGES 251 (308)
T ss_dssp HHHHTTCGGGEEEEEEESSSSS
T ss_pred hhhhcCCcccceeEEecCcCcc
Confidence 997766 389999999994
No 25
>smart00098 alkPPc Alkaline phosphatase homologues.
Probab=97.40 E-value=0.00064 Score=73.35 Aligned_cols=74 Identities=20% Similarity=0.197 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHHHcCCCc-EEEEecCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh-cCCEEEEeCCCCCh
Q 010407 398 KALEIAERAKKAILSRRFH-QVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEK-VGGIYLVTADHGNA 471 (511)
Q Consensus 398 sa~ev~d~~i~al~~~~yD-fV~vnfanpDmvGHtgd~ea~~kAIE~vD~~Lg~ll~al~~-~g~~lIITADHGN~ 471 (511)
+..+.++++|+.|++.+-. |++|+=...|..+|..|....+..+.++|++|+..++.+++ .+.+|||||||++.
T Consensus 235 sL~eMt~~Al~~L~~~~~GFfLmVEgg~ID~a~H~nd~~~~i~E~~~fd~AV~~a~~~~~~~~dTLiiVTADH~~g 310 (419)
T smart00098 235 SLAEMTEVAIRLLSKNERGFFLMVEGGRIDHAHHENDACGALHETVDFDQAIQAALEFAKKEDETLVIVTADHSHV 310 (419)
T ss_pred CHHHHHHHHHHHhhcCCCceEEEEecccCChhhccCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEEecCCCc
Confidence 4558889999999653333 77889999999999999999999999999999999999984 34689999999876
No 26
>PF08665 PglZ: PglZ domain; InterPro: IPR013973 This entry is a member of the Alkaline phosphatase clan.
Probab=97.32 E-value=0.00054 Score=65.30 Aligned_cols=59 Identities=24% Similarity=0.298 Sum_probs=41.4
Q ss_pred CCCcEEEEecCCcccCCCC--C---CHHHHHHHHH--HHHHHHHHHHHHHHhcCCEEEEeCCCCCh
Q 010407 413 RRFHQVRVNLPNSDMVGHT--G---DIEATVVACK--AADEAVKIIIDAIEKVGGIYLVTADHGNA 471 (511)
Q Consensus 413 ~~yDfV~vnfanpDmvGHt--g---d~ea~~kAIE--~vD~~Lg~ll~al~~~g~~lIITADHGN~ 471 (511)
...++|++.+...|..||. . ..++..++|+ .....|..++..+...+..|+||||||+.
T Consensus 110 ~~~~vv~vv~n~ID~~~~~~~~~~~~~~~~~~~i~~~~~~~~L~~li~~l~~~~~~V~ITsDHG~v 175 (181)
T PF08665_consen 110 KGTRVVYVVHNFIDDLGHKRKSEQLGFEAMYRAIELWWFEHELRSLIKELRNAGRRVVITSDHGFV 175 (181)
T ss_pred CCCCEEEEEEcchhhhhCcccccchhHHHHHHHHhhhhhhHHHHHHHHHHHhcCceEEEECCCCCE
Confidence 4578999999999999993 2 2444444554 00114455666666668899999999995
No 27
>COG1785 PhoA Alkaline phosphatase [Inorganic ion transport and metabolism]
Probab=97.22 E-value=0.0013 Score=71.74 Aligned_cols=74 Identities=30% Similarity=0.339 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHHHHcCCCc-EEEEecCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC-EEEEeCCCCCh
Q 010407 398 KALEIAERAKKAILSRRFH-QVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGG-IYLVTADHGNA 471 (511)
Q Consensus 398 sa~ev~d~~i~al~~~~yD-fV~vnfanpDmvGHtgd~ea~~kAIE~vD~~Lg~ll~al~~~g~-~lIITADHGN~ 471 (511)
|..+.++++|+.|++++-. |.+|+=...|++||..|+...+.-++.+|+.+...++.+++.+. .||+||||-+-
T Consensus 281 sLaeMt~kAi~~L~kn~~GFFLMVEGg~ID~a~Hand~~~~i~e~~~fd~Avq~al~fA~k~~~TLVIvTADH~tg 356 (482)
T COG1785 281 SLAEMTEKAIDLLSKNKKGFFLMVEGGRIDWAGHANDPAGAIGETVAFDEAVQAALDFAEKDGNTLVIVTADHETG 356 (482)
T ss_pred cHHHHHHHHHHHhccCCCceEEEEeccccchhhcCcCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccCC
Confidence 4457889999999776655 67788889999999999999999999999999999999988754 79999999653
No 28
>PRK11560 phosphoethanolamine transferase; Provisional
Probab=97.03 E-value=0.013 Score=65.63 Aligned_cols=126 Identities=14% Similarity=0.203 Sum_probs=74.8
Q ss_pred cccHHHHHHhCCCcEEeeecCCccccEEEeeCCcccccccCCCceEEeecCCccccccCCcCCCHHHHHHHHHHHHHcC-
Q 010407 335 DRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSR- 413 (511)
Q Consensus 335 ~~tl~evLs~~Gl~q~riAEteKyahvt~FfnGG~~~~~~~~ge~r~li~sp~V~tyDl~pemsa~ev~d~~i~al~~~- 413 (511)
.+.+-+++.++|++..-++.. .+.|++|.+....+ +.++ ...+.. ..... +..-+.+.+.+.++|++.
T Consensus 318 ~~nlld~l~~aGy~t~w~SnQ----~~~w~~n~~~~~~~--~~~~--~~~~~~-~~~g~--~~~D~~LL~~l~~~L~~~~ 386 (558)
T PRK11560 318 EQNVFAVLKQLGFSSELFAMQ----SEMWFYNNTMADNY--AYRE--QIGAEP-RNRGK--PVDDMLLVDEMKQSLGRNP 386 (558)
T ss_pred cCCHHHHHHHCCCcEEEeecc----cceeeecCcccccc--hhhh--hccccc-CCCCC--CcChHHHHHHHHHHHHhcC
Confidence 457889999999998766432 23677764433333 2221 111110 00000 011123556667777532
Q ss_pred -CCcEEEEecCCccc-----------------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEeCCCC
Q 010407 414 -RFHQVRVNLPNSDM-----------------------VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHG 469 (511)
Q Consensus 414 -~yDfV~vnfanpDm-----------------------vGHtgd~ea~~kAIE~vD~~Lg~ll~al~~~g~~lIITADHG 469 (511)
+.-|+++|+-.+=. +.+.....++..+|..+|..|++|++.+++.+..+|+|||||
T Consensus 387 ~~~~~ivLH~~GSH~~Y~~RyP~~f~~F~p~~~~~~~~c~~~~~~n~YdnsI~ytD~~lg~ii~~Lk~~nTivIy~SDHG 466 (558)
T PRK11560 387 DGKHLIILHTKGSHYNYTQRYPRSFARYQPECIGVDSGCSKAQLINSYDNSVLYVDHFISSVIDQLRDKKAIVFYAADHG 466 (558)
T ss_pred CCCeEEEEeccCCCcChhhcCCHhhhccCCcCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEcCCC
Confidence 12388886544311 000111245788999999999999999998777889999999
Q ss_pred Ch
Q 010407 470 NA 471 (511)
Q Consensus 470 N~ 471 (511)
-.
T Consensus 467 e~ 468 (558)
T PRK11560 467 ES 468 (558)
T ss_pred Cc
Confidence 84
No 29
>PF00245 Alk_phosphatase: Alkaline phosphatase; InterPro: IPR001952 This entry represents alkaline phosphatases (3.1.3.1 from EC) (ALP), which act as non-specific phosphomonoesterases to hydrolyse phosphate esters, optimally at high pH. The reaction mechanism involves the attack of a serine alkoxide on a phosphorus of the substrate to form a transient covalent enzyme-phosphate complex, followed by the hydrolysis of the serine phosphate. Alkaline phosphatases are found in all kingdoms of life, with the exception of some plants. Alkaline phosphatases are metalloenzymes that exist as a dimer, each monomer binding metal ions. The metal ions they carry can differ, although zinc and magnesium are the most common. For example, Escherichia coli alkaline phosphatase (encoded by phoA) requires the presence of two zinc ions bound at the M1 and M2 metal sites, and one magnesium ion bound at the M3 site []. However, alkaline phosphatases from Thermotoga maritima and Bacillus subtilis require cobalt for maximal activity []. In mammals, there are four alkaline phosphatase isozymes: placental, placental-like (germ cell), intestinal and tissue-nonspecific (liver/bone/kidney). All four isozymes are anchored to the outer surface of the plasma membrane by a covalently attached glycosylphosphatidylinositol (GPI) anchor []. Human alkaline phosphatases have four metal binding sites: two for zinc, one for magnesium, and one for calcium ion. Placental alkaline phosphatase (ALPP or PLAP) is highly polymorphic, with at least three common alleles []. Its activity is down-regulated by a number of effectors such as l-phenylalanine, 5'-AMP, and by p-nitrophenyl-phosphonate (PNPPate) []. The placental-like isozyme (ALPPL or PLAP-like) is elevated in germ cell tumours. The intestinal isozyme (ALPI or IAP) has the ability to detoxify lipopolysaccharide and prevent bacterial invasion across the gut mucosal barrier []. The tissue-nonspecific isozyme (ALPL) is, and may play a role in skeletal mineralisation. Defects in ALPL are a cause of hypophosphatasia, including infantile-type (OMIM:241500), childhood-type (OMIM:241510) and adult-type (OMIM:146300). Hhypophosphatasia is an inherited metabolic bone disease characterised by defective skeletal mineralisation []. This entry also contains the related enzyme streptomycin-6-phosphate phosphatase (3.1.3.39 from EC) (encoded by strK) from Streptomyces species. This enzyme is involved in the synthesis of the antibiotic streptomycin, specifically cleaving both streptomycin-6-phosphate and, more slowly, streptomycin-3-phosphate [].; GO: 0016791 phosphatase activity, 0008152 metabolic process; PDB: 1AJD_B 1ALH_B 2ANH_B 3BDF_A 1ELZ_B 1ELX_B 1B8J_B 2GA3_A 1ANJ_B 1Y6V_B ....
Probab=97.00 E-value=0.00088 Score=72.31 Aligned_cols=74 Identities=27% Similarity=0.316 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHHcCCCc-EEEEecCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC-CEEEEeCCCCCh
Q 010407 398 KALEIAERAKKAILSRRFH-QVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVG-GIYLVTADHGNA 471 (511)
Q Consensus 398 sa~ev~d~~i~al~~~~yD-fV~vnfanpDmvGHtgd~ea~~kAIE~vD~~Lg~ll~al~~~g-~~lIITADHGN~ 471 (511)
+..+.++++|+.|.+.+-. |.+|+=...|.++|..|....+..+..+|++|+..++.++..+ ..||+||||++-
T Consensus 238 sL~eMt~~Al~~L~~~~~GFfLmVEg~~ID~a~H~nd~~~~i~E~~~fD~AV~~a~~~~~~~~~TLiIVTADHetg 313 (421)
T PF00245_consen 238 SLAEMTEKALEVLSKNPKGFFLMVEGGRIDWAGHANDAARAIEETLEFDDAVKVALDFAEKDDDTLIIVTADHETG 313 (421)
T ss_dssp HHHHHHHHHHHHHTTSTT-EEEEEEETHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHCSSEEEEEEESSEES
T ss_pred CHHHHHHHHHHHHhhCCCCcEEEecccchhhhhhhchHHHHHHHHHHHHHHHHHHHHHhccCCCeEEEEEecccCc
Confidence 4568889999999654433 7788999999999999999999999999999999999996554 478899999987
No 30
>COG1524 Uncharacterized proteins of the AP superfamily [General function prediction only]
Probab=96.92 E-value=0.00065 Score=73.15 Aligned_cols=60 Identities=27% Similarity=0.404 Sum_probs=55.4
Q ss_pred CCCcEEEEecCCcccCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHhcC----CEEEEeCCCCChh
Q 010407 413 RRFHQVRVNLPNSDMVGHTG--DIEATVVACKAADEAVKIIIDAIEKVG----GIYLVTADHGNAE 472 (511)
Q Consensus 413 ~~yDfV~vnfanpDmvGHtg--d~ea~~kAIE~vD~~Lg~ll~al~~~g----~~lIITADHGN~E 472 (511)
.++|+.++++.+.|.+||.- +.+++.++++++|..++++++.+++.+ ..++|+||||...
T Consensus 216 ~~p~~~l~~~~~iD~~~H~~G~~s~~~~~~~~~~d~~l~~ll~~l~~~~~~~~~~~ii~sDHG~~~ 281 (450)
T COG1524 216 ADPDLLLVYLPNIDAIGHKYGPDSPEYAEAVREVDSLLGELLELLKKRGLYEEYLVIITSDHGMSP 281 (450)
T ss_pred cCcchhhhhccccchhhhccCCCCHHHHhhhhhhhhhHHHHHHHHHhhccccceEEEEecccccch
Confidence 47999999999999999983 688999999999999999999999887 8999999999973
No 31
>PRK04135 cofactor-independent phosphoglycerate mutase; Provisional
Probab=96.90 E-value=0.0013 Score=70.49 Aligned_cols=64 Identities=25% Similarity=0.344 Sum_probs=47.9
Q ss_pred CCCCCcEEEEEEeccCCCCCCCC--CccccCCCccHHHHHhhCCCCceeeeccccccCCCCCCCCCcchhhhccc
Q 010407 12 LSRNNIVAVVVLDGWGEFKPDKY--NCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNAL 84 (511)
Q Consensus 12 ~~~~~~v~L~IlDGwG~~~~~~~--NAi~~A~tp~~d~l~~~~p~~~~~L~asG~~VGLP~~gqmGNSEVGH~~i 84 (511)
.++.+++|++|+||.|-.+-.++ =.++.|+|||||+|.++--. -++++ .| .|.-=-|||+||+|
T Consensus 4 ~~~~~K~v~ii~DGmgD~p~~e~gkTPLe~A~tPnlD~lA~~G~~--Gl~~~------v~-~G~~pGSD~a~lsl 69 (395)
T PRK04135 4 QKNDSKIVLLVLDGLGGLPHPENGKTELEAAKTPNLDALAKESDL--GLLIP------VL-PGITPGSGPGHLGL 69 (395)
T ss_pred ccCCCcEEEEEecCCCCCCCCCCCCChhhccCCCChHHHHHcCCc--cccee------eC-CCCCCCcHHHhhhh
Confidence 45667899999999998865443 38999999999999887433 33332 34 56656699999986
No 32
>COG3635 Predicted phosphoglycerate mutase, AP superfamily [Carbohydrate transport and metabolism]
Probab=96.65 E-value=0.0024 Score=67.65 Aligned_cols=69 Identities=23% Similarity=0.315 Sum_probs=51.9
Q ss_pred CCcEEEEEEeccCCCCCCCC---CccccCCCccHHHHHhhCCCCceeeeccccccCCCCCCCCCcchhhhccc-CCc-cc
Q 010407 15 NNIVAVVVLDGWGEFKPDKY---NCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNAL-GAG-RI 89 (511)
Q Consensus 15 ~~~v~L~IlDGwG~~~~~~~---NAi~~A~tp~~d~l~~~~p~~~~~L~asG~~VGLP~~gqmGNSEVGH~~i-GaG-Ri 89 (511)
+.+++|+|+||.|-++-.+. --++.|+|||||+|.+.--. |..--.+ .|.-=-|+++||+| |.- +.
T Consensus 3 ~~killiv~DGlgDrP~~~l~gkTpLq~A~tPNmD~LA~~g~~--------Gl~~~i~-pGi~pGSd~ahLsl~GYDP~~ 73 (408)
T COG3635 3 KMKILLIVLDGLGDRPVEELDGKTPLQAAKTPNMDRLAKEGIC--------GLMDPIK-PGIRPGSDTAHLSLFGYDPYK 73 (408)
T ss_pred cceEEEEEecCCCCCcccccCCCCchhhcCCCCHHHHHhcCCc--------ccccccC-CCCCCCCCcceeeeeccCcce
Confidence 56799999999999977763 47899999999999887433 3333345 67778899999985 554 44
Q ss_pred ccc
Q 010407 90 FAQ 92 (511)
Q Consensus 90 v~q 92 (511)
.|+
T Consensus 74 yy~ 76 (408)
T COG3635 74 YYT 76 (408)
T ss_pred eec
Confidence 443
No 33
>TIGR02687 conserved hypothetical protein TIGR02687. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 880 amino acids in length. This protein is repeatedly found upstream of another uncharacterized protein of about 470 amino acids in length, modeled by TIGR02688.
Probab=96.63 E-value=0.0034 Score=73.15 Aligned_cols=58 Identities=24% Similarity=0.277 Sum_probs=48.7
Q ss_pred CCcEEEEecCCcccCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEeCCCCChhh
Q 010407 414 RFHQVRVNLPNSDMVGHTGD-----IEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAED 473 (511)
Q Consensus 414 ~yDfV~vnfanpDmvGHtgd-----~ea~~kAIE~vD~~Lg~ll~al~~~g~~lIITADHGN~E~ 473 (511)
..++|+++...+|..||... +++..++++.+++++.+|++.+. +..++||||||..-.
T Consensus 569 ~~~~vyiY~~~ID~~g~~~~~e~~~f~a~~~~l~el~~~v~~l~~~l~--~~~i~iTADHGfi~~ 631 (844)
T TIGR02687 569 DKRVIYIYHNKIDATGDKQSSEENVFEAVEETIVELKKLVKYLINRLN--GTNIIVTADHGFLYQ 631 (844)
T ss_pred CCcEEEEecCccchhhcccCCcchHHHHHHHHHHHHHHHHHHHHHhcC--CcEEEEECCCccccc
Confidence 46899999999999999742 35788999999999999988775 359999999999643
No 34
>TIGR03417 chol_sulfatase choline-sulfatase.
Probab=96.41 E-value=0.0074 Score=66.16 Aligned_cols=37 Identities=27% Similarity=0.399 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC----EEEEeCCCCCh
Q 010407 435 EATVVACKAADEAVKIIIDAIEKVGG----IYLVTADHGNA 471 (511)
Q Consensus 435 ea~~kAIE~vD~~Lg~ll~al~~~g~----~lIITADHGN~ 471 (511)
..+..+|+.+|.+||+|+++|++.|. +||+|||||..
T Consensus 253 ~~Y~~~v~~~D~~iG~il~~L~~~g~~dnTivvf~sDHG~~ 293 (500)
T TIGR03417 253 RAYFGAISYLDDKIGELLQTLEETRQADDTIVLFTSDHGDM 293 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcCCcEEEEECCCchh
Confidence 45778899999999999999998774 89999999973
No 35
>TIGR02535 hyp_Hser_kinase proposed homoserine kinase. The proposal that this family encodes a kinase is based on analogy to phosphomutases which are intramolecular phosphotransferases. A mutase active site could evolve to bring together homoserine and a phosphate donor such as phosphoenolpyruvate resulting in a kinase activity.
Probab=96.00 E-value=0.0081 Score=64.48 Aligned_cols=59 Identities=29% Similarity=0.438 Sum_probs=45.0
Q ss_pred cEEEEEEeccCCCCCCC---CCccccCCCccHHHHHhhCCCCceeeeccccccCCCCCCCCCcchhhhccc
Q 010407 17 IVAVVVLDGWGEFKPDK---YNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNAL 84 (511)
Q Consensus 17 ~v~L~IlDGwG~~~~~~---~NAi~~A~tp~~d~l~~~~p~~~~~L~asG~~VGLP~~gqmGNSEVGH~~i 84 (511)
+.||+|+||.|-.+-.+ .=.++.|+|||||+|.++--. -++++ .| +|.-=-|||+||+|
T Consensus 2 k~v~~i~DG~~D~p~~~l~gkTpLe~A~tP~lD~lA~~g~~--Gl~~~------v~-~g~~pgSd~a~lsl 63 (396)
T TIGR02535 2 KYIILIGDGMADWPLEELGGRTPLQVANTPNMDKLAKRGRC--GLLRT------VP-EGFPPGSDVANMSL 63 (396)
T ss_pred CEEEEEecCCCCCcccccCCCChhhccCCCcHHHHHhcCCC--cceee------cC-CCCCCCcHHHHHHh
Confidence 58999999999887433 258999999999999987433 33333 34 56667799999976
No 36
>KOG4126 consensus Alkaline phosphatase [Inorganic ion transport and metabolism]
Probab=95.98 E-value=0.021 Score=62.53 Aligned_cols=76 Identities=18% Similarity=0.161 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHHHHcCCCc-EEEEecCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEeCCCCChhh
Q 010407 398 KALEIAERAKKAILSRRFH-QVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAED 473 (511)
Q Consensus 398 sa~ev~d~~i~al~~~~yD-fV~vnfanpDmvGHtgd~ea~~kAIE~vD~~Lg~ll~al~~~g~~lIITADHGN~E~ 473 (511)
|..|.++++|+.|.+..-. |++|.=.-.|+..|..+.-.++.-..++|+.+..-++-..+.+..+|+||||+..-.
T Consensus 326 sL~eMte~Al~vL~~~~~GffLfVEGgrID~ghH~~~a~~aL~Et~ef~~Aiq~a~~~t~~~dTLivvTaDHsh~~s 402 (529)
T KOG4126|consen 326 SLSEMTEKALEVLSKNSKGFFLFVEGGRIDHGHHETDARQALDETLEFDKAIQRALELTSEEDTLIVVTADHSHTFS 402 (529)
T ss_pred CHHHHHHHHHHHHhhCCCceEEEEecccccccccccHHHHHHHHHHHHHHHHHHHHHhcCccCCEEEEeccccccee
Confidence 3458999999999765545 777888889999999999999998999999999888888888889999999998643
No 37
>PRK04200 cofactor-independent phosphoglycerate mutase; Provisional
Probab=95.89 E-value=0.0094 Score=63.99 Aligned_cols=59 Identities=20% Similarity=0.307 Sum_probs=45.1
Q ss_pred cEEEEEEeccCCCCCCC---CCccccCCCccHHHHHhhCCCCceeeeccccccCCCCCCCCCcchhhhccc
Q 010407 17 IVAVVVLDGWGEFKPDK---YNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNAL 84 (511)
Q Consensus 17 ~v~L~IlDGwG~~~~~~---~NAi~~A~tp~~d~l~~~~p~~~~~L~asG~~VGLP~~gqmGNSEVGH~~i 84 (511)
+.||+|+||.|-.+..+ .=.++.|+|||||+|.++--. -++++ .| +|.-=-|||+||+|
T Consensus 2 k~v~~i~DG~~D~p~~~l~gkTpLe~A~tP~lD~lA~~g~~--Gl~~~------v~-~g~~pgSd~a~lsl 63 (395)
T PRK04200 2 KYIILIGDGMADEPIEELGGKTPLQAAKTPNMDKMAREGRV--GLAKT------VP-EGFPPGSDVANMSI 63 (395)
T ss_pred CEEEEEecCCCCCcccccCCCCccceeCCCchHHHHhcCCc--cccee------cC-CCCCCCcHHHHHHh
Confidence 58999999999876433 258999999999999887433 33332 45 67777899999976
No 38
>COG3119 AslA Arylsulfatase A and related enzymes [Inorganic ion transport and metabolism]
Probab=95.81 E-value=0.023 Score=62.00 Aligned_cols=36 Identities=25% Similarity=0.541 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC----CEEEEeCCCC
Q 010407 434 IEATVVACKAADEAVKIIIDAIEKVG----GIYLVTADHG 469 (511)
Q Consensus 434 ~ea~~kAIE~vD~~Lg~ll~al~~~g----~~lIITADHG 469 (511)
.+.+...|+.+|..||+|+++|++.| .+||+|||||
T Consensus 259 ~~~Y~a~v~~~D~~iGrll~~L~~~g~~DnTivvftsDhG 298 (475)
T COG3119 259 MTVYAACVRYLDDQIGRLLDALKELGLLDNTIVVFTSDHG 298 (475)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhCCccCcEEEEeCCCC
Confidence 55667789999999999999999887 4778899999
No 39
>PRK13759 arylsulfatase; Provisional
Probab=95.67 E-value=0.025 Score=61.81 Aligned_cols=65 Identities=18% Similarity=0.227 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC----CEEEEeCCCCChhhhhccCCCCCCcccCCCcccCCCCCCCCceEEEEcCC
Q 010407 434 IEATVVACKAADEAVKIIIDAIEKVG----GIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVRFLNCLLE 509 (511)
Q Consensus 434 ~ea~~kAIE~vD~~Lg~ll~al~~~g----~~lIITADHGN~E~m~~~D~~~~~~~~~g~p~~~t~HT~npVP~ii~g~~ 509 (511)
...+..+|+.+|.+||+|++++++.| .+||+|||||.. |- +.| ...++.+ .. ..-.|||||+++.
T Consensus 267 ~~~Y~~~i~~~D~~iG~l~~~l~~~g~~dnTiiv~tsDHG~~--~g---~~~--~~~k~~~--~e--~~~rVPlii~~p~ 335 (485)
T PRK13759 267 RAAYYGLITHIDHQIGRFLQALKEFGLLDNTIILFVSDHGDM--LG---DHY--LFRKGYP--YE--GSAHIPFIIYDPG 335 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccCeEEEEECCCccc--cc---ccc--cccCCcc--cc--ccceeeEEEecCC
Confidence 44677789999999999999999876 378889999963 21 111 0011111 11 1248999999764
No 40
>PRK09598 lipid A phosphoethanolamine transferase; Reviewed
Probab=95.61 E-value=0.29 Score=54.59 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC--CEEEEeCCCCC
Q 010407 435 EATVVACKAADEAVKIIIDAIEKVG--GIYLVTADHGN 470 (511)
Q Consensus 435 ea~~kAIE~vD~~Lg~ll~al~~~g--~~lIITADHGN 470 (511)
.++-.+|...|..|+++++.+++.+ ..+|.+||||-
T Consensus 404 n~YdnsI~ytD~~l~~ii~~Lk~~~~~t~iIy~SDHGe 441 (522)
T PRK09598 404 NAYDNTIFYNDYLLDKIISMLKNLKQPALMIYLSDHGE 441 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEccCcc
Confidence 4567799999999999999998754 58899999996
No 41
>PRK04024 cofactor-independent phosphoglycerate mutase; Provisional
Probab=95.41 E-value=0.02 Score=61.84 Aligned_cols=59 Identities=24% Similarity=0.375 Sum_probs=44.4
Q ss_pred cEEEEEEeccCCCCCCC---CCccccCCCccHHHHHhhCCCCceeeeccccccCCCCCCCCCcchhhhccc
Q 010407 17 IVAVVVLDGWGEFKPDK---YNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNAL 84 (511)
Q Consensus 17 ~v~L~IlDGwG~~~~~~---~NAi~~A~tp~~d~l~~~~p~~~~~L~asG~~VGLP~~gqmGNSEVGH~~i 84 (511)
+.||+|+||.|-.+-.+ .=.++.|+|||||+|.++--. -+++ =.| .|.-=-|||+||+|
T Consensus 4 k~v~~i~DG~~D~p~~~l~gkTpLe~A~tPnlD~lA~~g~~--Gl~~------~v~-~G~~pgSd~a~lsl 65 (412)
T PRK04024 4 KILLIILDGLGDRPVKELGGKTPLEAANTPNMDKLAKEGIC--GLMD------PIS-PGVRPGSDTAHLAI 65 (412)
T ss_pred cEEEEEecCCCCCcccccCCCChhhccCCCChHHHHHcCCc--ccce------eeC-CCCCCCcHHHHhhh
Confidence 69999999999887533 358999999999999887433 2222 234 56666799999985
No 42
>KOG2125 consensus Glycosylphosphatidylinositol anchor synthesis protein [Signal transduction mechanisms]
Probab=95.11 E-value=0.021 Score=64.52 Aligned_cols=64 Identities=23% Similarity=0.283 Sum_probs=53.1
Q ss_pred HHcCCCcEEEEecCCcccCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHhcC----CEEEEeCCCCChhh
Q 010407 410 ILSRRFHQVRVNLPNSDMVGHTG--DIEATVVACKAADEAVKIIIDAIEKVG----GIYLVTADHGNAED 473 (511)
Q Consensus 410 l~~~~yDfV~vnfanpDmvGHtg--d~ea~~kAIE~vD~~Lg~ll~al~~~g----~~lIITADHGN~E~ 473 (511)
....++|+.++||-..|++||.. .+...-.++++.|+.+++|.+.+.+.. ..+++++|||+.|.
T Consensus 187 ~~~~~Wd~lILHYLGlDHIGH~~G~~Sp~vp~KLkEmDeiv~~I~~~~~~~~s~d~tllil~gDHGM~e~ 256 (760)
T KOG2125|consen 187 LNSSDWDLLILHYLGLDHIGHVLGPSSPLVPAKLKEMDEIVKRIHDYLMEHRSGDQTLLILCGDHGMTES 256 (760)
T ss_pred hhhcchhHHHHHHhccceeccccCCcchhhhHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEcccccccc
Confidence 44567999999999999999983 466667789999999999999886643 36999999999764
No 43
>PRK11598 putative metal dependent hydrolase; Provisional
Probab=95.11 E-value=0.29 Score=54.89 Aligned_cols=37 Identities=16% Similarity=0.150 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC----CEEEEeCCCCCh
Q 010407 435 EATVVACKAADEAVKIIIDAIEKVG----GIYLVTADHGNA 471 (511)
Q Consensus 435 ea~~kAIE~vD~~Lg~ll~al~~~g----~~lIITADHGN~ 471 (511)
.++..+|..+|.+|+++++.+++.+ ..+|.+||||-.
T Consensus 418 n~YdnsI~ytD~~lg~ii~~Lk~~~~~~nT~iIy~SDHGe~ 458 (545)
T PRK11598 418 NTYDNTILYVDYIVDKAINLLKQHQDKFNTSLVYLSDHGES 458 (545)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcCCeEEEEECcCCCc
Confidence 4578899999999999999998865 378889999973
No 44
>PRK03776 phosphoglycerol transferase I; Provisional
Probab=94.99 E-value=0.27 Score=56.99 Aligned_cols=37 Identities=19% Similarity=0.332 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC----CEEEEeCCCCCh
Q 010407 435 EATVVACKAADEAVKIIIDAIEKVG----GIYLVTADHGNA 471 (511)
Q Consensus 435 ea~~kAIE~vD~~Lg~ll~al~~~g----~~lIITADHGN~ 471 (511)
.....+++.+|.+||++++++++.+ ..||+|||||..
T Consensus 358 ~~~~~~v~~~D~~iG~fi~~Lk~~g~~dNTiIV~~sDHG~m 398 (762)
T PRK03776 358 NQSFSAVSCSQENIAALINKIKASPWFKNTVIVVSSDHLAM 398 (762)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCccCeEEEEEccCCcc
Confidence 4456789999999999999999876 388999999984
No 45
>TIGR00306 apgM 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal form. This model describes a set of proteins in the Archaea (two each in Methanococcus jannaschii, Methanobacterium thermoautotrophicum, and Archaeoglobus fulgidus) and in Aquifex aeolicus (1 member).
Probab=94.63 E-value=0.03 Score=60.25 Aligned_cols=59 Identities=24% Similarity=0.416 Sum_probs=43.3
Q ss_pred EEEEEeccCCCCCCC---CCccccCCCccHHHHHhhCCCCceeeeccccccCCCCCCCCCcchhhhccc-CC
Q 010407 19 AVVVLDGWGEFKPDK---YNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNAL-GA 86 (511)
Q Consensus 19 ~L~IlDGwG~~~~~~---~NAi~~A~tp~~d~l~~~~p~~~~~L~asG~~VGLP~~gqmGNSEVGH~~i-Ga 86 (511)
|++|+||.|-.+-.+ .=.++.|+|||||+|.++--. -++++ .| +|.-=-||++||+| |.
T Consensus 1 v~~i~DG~~D~p~~~l~gkTpLe~A~tPnlD~lA~~g~~--Gl~~~------v~-~G~~pgSd~a~l~llGY 63 (396)
T TIGR00306 1 VLIIIDGLADRPLEELDGKTPLQVAKTPNMDRLAEEGIC--GLMRT------IK-EGIRPGSDTAHLSILGY 63 (396)
T ss_pred CEEEecCCCCCcccccCCCCchhccCCCChHHHHhcCCe--eeeee------eC-CCCCCCchhhhhhhccC
Confidence 589999999886433 348999999999999887433 33332 34 56666799999985 44
No 46
>PRK12363 phosphoglycerol transferase I; Provisional
Probab=93.79 E-value=0.68 Score=53.39 Aligned_cols=128 Identities=18% Similarity=0.206 Sum_probs=69.9
Q ss_pred ccHHHHHHhCCCcEEeeecCCccccEEEeeCCcccccccCCCceEEeecC----Ccccccc--CCcCCCHHHHHHHHHHH
Q 010407 336 RTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPS----DSGITFN--VQPKMKALEIAERAKKA 409 (511)
Q Consensus 336 ~tl~evLs~~Gl~q~riAEteKyahvt~FfnGG~~~~~~~~ge~r~li~s----p~V~tyD--l~pemsa~ev~d~~i~a 409 (511)
.+|+++|+++|.++.-+- ++...|||=+. .+..-|-+++.-.+ ....+.+ ....++-....+.+++.
T Consensus 240 ~~La~ILkq~GY~Taf~h-----G~~~sF~nrd~--fyk~hGFD~f~d~~~f~~~~~~~~~~~~~WGl~Dd~lfd~A~~~ 312 (703)
T PRK12363 240 RCLGDYLKDQGYTNHYVG-----GADASFAGKGK--FLSSHGFDEVHDVNYFLHDKGVAPKHFSAWGVHDDVLLDDAYDE 312 (703)
T ss_pred chHHHHHHhCCCcEEEEe-----CCCcCcCchhh--HHHhCCCCEEeechhhccccccCcccCCCCCcccHHHHHHHHHH
Confidence 678999999999988773 33334444221 11101222221100 0000000 01122335677777777
Q ss_pred HHc----CCCcEEEE-----ecCC--ccc-C-C-----CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC----EEEEeCC
Q 010407 410 ILS----RRFHQVRV-----NLPN--SDM-V-G-----HTGDIEATVVACKAADEAVKIIIDAIEKVGG----IYLVTAD 467 (511)
Q Consensus 410 l~~----~~yDfV~v-----nfan--pDm-v-G-----Htgd~ea~~kAIE~vD~~Lg~ll~al~~~g~----~lIITAD 467 (511)
|++ +++=|+.+ |++. .+. . . ..+ ...+..+++..|++|+++++.+++.|. +|||++|
T Consensus 313 Le~Ls~~~qPFfl~llTvsnH~Py~~lp~~~~~~~~~~~~g-d~~Yl~tI~ysD~aIG~FId~LKksglydNTIIV~~GD 391 (703)
T PRK12363 313 FETLSRAGQPFMLTTLTMDTHHPAGHLPSACKGQRYDSPLG-DIGMLHAIKCSDRLIGQLVDRIRNSRYGKNTIIVIASD 391 (703)
T ss_pred HHhhhccCCCEEEEeeCCCCCCCcccCchhccccccccccc-cHHHHHHHHHHHHHHHHHHHHHHhcCCcCCeEEEEEcC
Confidence 653 33323332 3321 010 1 0 011 256778999999999999999998763 8899999
Q ss_pred CCCh
Q 010407 468 HGNA 471 (511)
Q Consensus 468 HGN~ 471 (511)
||..
T Consensus 392 H~~~ 395 (703)
T PRK12363 392 HLAM 395 (703)
T ss_pred CCcc
Confidence 9963
No 47
>COG3083 Predicted hydrolase of alkaline phosphatase superfamily [General function prediction only]
Probab=92.53 E-value=0.52 Score=52.19 Aligned_cols=36 Identities=22% Similarity=0.470 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC----CEEEEeCCCCC
Q 010407 435 EATVVACKAADEAVKIIIDAIEKVG----GIYLVTADHGN 470 (511)
Q Consensus 435 ea~~kAIE~vD~~Lg~ll~al~~~g----~~lIITADHGN 470 (511)
..+..|+..+|+.|++++++++..| ..||||||||-
T Consensus 423 ~~Y~~a~~~vD~~I~~vLe~L~~~~~L~NTvVIITs~HG~ 462 (600)
T COG3083 423 NRYQNALREVDSQIGRVLEQLRNSGLLDNTVVIITADHGE 462 (600)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccceEEEEECCCCc
Confidence 6678899999999999999997655 48999999998
No 48
>PRK10649 hypothetical protein; Provisional
Probab=92.20 E-value=1.1 Score=50.51 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC--CEEEEeCCCCCh
Q 010407 435 EATVVACKAADEAVKIIIDAIEKVG--GIYLVTADHGNA 471 (511)
Q Consensus 435 ea~~kAIE~vD~~Lg~ll~al~~~g--~~lIITADHGN~ 471 (511)
..+..+|...|..|+++++.+++.+ ..+|.+||||-.
T Consensus 427 ~~Y~nsI~y~D~~l~~ii~~Lk~~~~nt~iiy~SDHGe~ 465 (577)
T PRK10649 427 NDYDNANLYNDHVVASLIKDFKATDPNGFLVYFSDHGEE 465 (577)
T ss_pred HhhhHHHHHHHHHHHHHHHHHhcCCCCeEEEEECCCCcc
Confidence 4688899999999999999998753 577889999984
No 49
>COG1368 MdoB Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]
Probab=85.09 E-value=3.5 Score=47.09 Aligned_cols=129 Identities=16% Similarity=0.094 Sum_probs=80.6
Q ss_pred cccccHHHHHHhCCCcEEeeecCCccccEEEeeCCcccccccCCCceEEeecCCccccccC------CcCCCHHHHHHHH
Q 010407 333 EIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNV------QPKMKALEIAERA 406 (511)
Q Consensus 333 ~~~~tl~evLs~~Gl~q~riAEteKyahvt~FfnGG~~~~~~~~ge~r~li~sp~V~tyDl------~pemsa~ev~d~~ 406 (511)
..-+++..+|+++|.++..+ ++..-+|||....-+- -|-+.+.-+ ..|+. ....|-+...+++
T Consensus 340 ~~~~slp~iLk~~GY~t~a~-----hg~~~~fwNr~~~yk~--~Gfd~f~~~----~~~~~~~~~~~~~G~sD~~l~~~~ 408 (650)
T COG1368 340 NKYSSLPAILKQQGYKTAAL-----HGGDGSFWNRKSFYKI--FGFDDFFDL----ESFDGNADSEIGWGLSDKDLFKES 408 (650)
T ss_pred CCcccHHHHHhcCCceEEEE-----eCCCcceecHHHHHHh--cChhhccch----hhcCCCcccccCCCCchHHHHHHH
Confidence 33789999999999999999 6777789998753332 232222211 12221 1133445567777
Q ss_pred HHHHHcCCC---cEEEEe-----cCCcccCC-------CCC--CHHHHHHHHHHHHHHHHHHHHHHHhcC----CEEEEe
Q 010407 407 KKAILSRRF---HQVRVN-----LPNSDMVG-------HTG--DIEATVVACKAADEAVKIIIDAIEKVG----GIYLVT 465 (511)
Q Consensus 407 i~al~~~~y---DfV~vn-----fanpDmvG-------Htg--d~ea~~kAIE~vD~~Lg~ll~al~~~g----~~lIIT 465 (511)
++.+++.+. .+++-- |.-++..- +.+ -...+.+++...|++++..++.+++.| ..++++
T Consensus 409 ~~~l~~~~~Pfy~~~iTlsnH~Pf~~~~~~~~~~~~~~~~~~~~l~~y~~~~~y~D~al~~F~~~lkk~~~~~~sviv~~ 488 (650)
T COG1368 409 LPLLKKLKKPFFSFVITLSNHGPFELPEGKRNELLEEPLSASTALANYLQAVHYADEALGQFIDKLKKSGLYKNSVIVLY 488 (650)
T ss_pred HHHHHhcCCChHheEEeccCCCCCCCChhhhcccccccCcCcccccchhhhhhhHHHHHHHHHHHHHhcCCCCCcEEEEE
Confidence 777764433 233210 11111111 111 245577789999999999999999886 389999
Q ss_pred CCCCChh
Q 010407 466 ADHGNAE 472 (511)
Q Consensus 466 ADHGN~E 472 (511)
+||.-+.
T Consensus 489 GDH~~~~ 495 (650)
T COG1368 489 GDHYGIS 495 (650)
T ss_pred CCCCCcc
Confidence 9999864
No 50
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=84.75 E-value=2.9 Score=41.04 Aligned_cols=75 Identities=17% Similarity=0.182 Sum_probs=50.2
Q ss_pred ceEEEEeecCCCc-cccHHhHHHHHHHHHHcCCCeEEEEEeecCCCCCCCchHHHHHHHHHHHHHHhcCCCCceEEEEee
Q 010407 123 TLHLIGLLSDGGV-HSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGG 201 (511)
Q Consensus 123 ~lHl~GLlSdGGV-Hsh~~Hl~al~~~a~~~g~~~v~vH~~~DGRDt~p~s~~~yl~~l~~~~~~~~~~~~~~~iasv~G 201 (511)
.-.++=|||||.- -+-++.+.+-.++|++.|| + ||.|.=|-. . ++..+.++++ -.|
T Consensus 111 ~~kvvILLTDG~n~~~~i~P~~aAa~lA~~~gV-~--iytIgiG~~---d------~~~l~~iA~~-----------tgG 167 (191)
T cd01455 111 DEAIVIVLSDANLERYGIQPKKLADALAREPNV-N--AFVIFIGSL---S------DEADQLQREL-----------PAG 167 (191)
T ss_pred CCcEEEEEeCCCcCCCCCChHHHHHHHHHhCCC-E--EEEEEecCC---C------HHHHHHHHhC-----------CCC
Confidence 3468999999996 5556888876889999998 3 555543431 0 2222222322 149
Q ss_pred cccccccCCCCChHHHHHHHHHHH
Q 010407 202 RMYVTMDRYENDWDVVKRGWDAQV 225 (511)
Q Consensus 202 RyyvaMDR~d~rw~rv~~ay~a~~ 225 (511)
|||+|.|. +-.++.|+.|.
T Consensus 168 ~~F~A~d~-----~~L~~iy~~I~ 186 (191)
T cd01455 168 KAFVCMDT-----SELPHIMQQIF 186 (191)
T ss_pred cEEEeCCH-----HHHHHHHHHHH
Confidence 99978776 78888888775
No 51
>KOG2124 consensus Glycosylphosphatidylinositol anchor synthesis protein [Signal transduction mechanisms]
Probab=83.68 E-value=1.4 Score=51.35 Aligned_cols=57 Identities=25% Similarity=0.306 Sum_probs=46.3
Q ss_pred cEEEEecCCcccCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHhc--C--CEEEEeCCCCChh
Q 010407 416 HQVRVNLPNSDMVGHTG--DIEATVVACKAADEAVKIIIDAIEKV--G--GIYLVTADHGNAE 472 (511)
Q Consensus 416 DfV~vnfanpDmvGHtg--d~ea~~kAIE~vD~~Lg~ll~al~~~--g--~~lIITADHGN~E 472 (511)
=..++|....|-.||.. +...+++.++.+|+-+.++.+..... + ..-+.|||||+..
T Consensus 199 vVfflhLlg~dt~gH~~~P~s~~y~~nl~~~d~~i~~~y~l~e~~fnD~kTayi~TaDhgms~ 261 (883)
T KOG2124|consen 199 IVFFLHLLGIDTAGHAHRPYSVEYRENLKYTDKGIRELYDLFENYFNDGKTAYIFTADHGMSD 261 (883)
T ss_pred eEEEEeecCcCccccccCCCcHHHHHHhhcCCccHHHHHHHHHHHhcCCcceEEEehhccccc
Confidence 46789999999999974 68889999999999887777766432 2 4789999999853
No 52
>KOG3867 consensus Sulfatase [General function prediction only]
Probab=81.08 E-value=2.3 Score=47.61 Aligned_cols=40 Identities=23% Similarity=0.284 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcC----CEEEEeCCCCChh
Q 010407 433 DIEATVVACKAADEAVKIIIDAIEKVG----GIYLVTADHGNAE 472 (511)
Q Consensus 433 d~ea~~kAIE~vD~~Lg~ll~al~~~g----~~lIITADHGN~E 472 (511)
....+..+|+.+|..+|+++++++..| ..++.|||||-+-
T Consensus 267 ~~~~y~~~V~~mD~~VG~ildaL~~~gl~nnTiv~FtSDnG~~~ 310 (528)
T KOG3867|consen 267 KRGLYGDMVSEMDWSVGRILDALDDLGLANNTLVIFTSDNGGPL 310 (528)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhCcccCeEEEEeCCCCccc
Confidence 356677889999999999999998876 3889999999863
No 53
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=79.21 E-value=9.2 Score=35.45 Aligned_cols=81 Identities=19% Similarity=0.215 Sum_probs=54.0
Q ss_pred HhHHHHHHHHHHcCCCeEEEEEeecCCCCCC---------CchHHHHHHHHHHHHHHhcCCCCceEEEEeecc--ccccc
Q 010407 140 DQLQLLLKGASERGAKRIRLHILTDGRDVLD---------GSSVGFVETIEKDLAELRGKGVDAQIASGGGRM--YVTMD 208 (511)
Q Consensus 140 ~Hl~al~~~a~~~g~~~v~vH~~~DGRDt~p---------~s~~~yl~~l~~~~~~~~~~~~~~~iasv~GRy--yvaMD 208 (511)
+.+..+.+++++.|++-+.+|+.+....... ..+.+++++..+..+.+ |+. .|.+.+|++ + .-+
T Consensus 27 ~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~l---g~~-~i~~~~g~~~~~-~~~ 101 (213)
T PF01261_consen 27 DEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKRL---GAK-YIVVHSGRYPSG-PED 101 (213)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHHH---TBS-EEEEECTTESSS-TTS
T ss_pred HHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHHHh---CCC-ceeecCcccccc-cCC
Confidence 4678899999999998788999988887643 12366666666666777 774 777888843 2 112
Q ss_pred CCCCChHHHHHHHHHHH
Q 010407 209 RYENDWDVVKRGWDAQV 225 (511)
Q Consensus 209 R~d~rw~rv~~ay~a~~ 225 (511)
-++.+|+++.+.++.++
T Consensus 102 ~~~~~~~~~~~~l~~l~ 118 (213)
T PF01261_consen 102 DTEENWERLAENLRELA 118 (213)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 11445666555555443
No 54
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.53 E-value=5.9 Score=40.30 Aligned_cols=159 Identities=19% Similarity=0.168 Sum_probs=94.8
Q ss_pred CCCcEEEEEEeccCCCCCCCC------CccccCCCccHHHHHhhCCCCceeeecccccc--CCCCC-CCCCcchhhhccc
Q 010407 14 RNNIVAVVVLDGWGEFKPDKY------NCIHVADTPTMDSFKKSAPGRWRLLRAHGSAV--GLPTE-DDMGNSEVGHNAL 84 (511)
Q Consensus 14 ~~~~v~L~IlDGwG~~~~~~~------NAi~~A~tp~~d~l~~~~p~~~~~L~asG~~V--GLP~~-gqmGNSEVGH~~i 84 (511)
..+|-+-||+||+|++..... =.|..|=-|+-.++.+.+ ..++++|..| =+|=+ -.-=++|-|+++.
T Consensus 26 ~~~~klaIVIddlG~~~~~~~~i~~Lp~eVTlA~~P~~~~~~~~~----~~A~~~G~evlih~PmeP~~~~~~e~gtL~~ 101 (250)
T COG2861 26 ARGPKLAIVIDDLGLSQTGTQAILALPPEVTLAFAPFAPHAREWA----QKARNAGHEVLIHMPMEPFSYPKIEPGTLRP 101 (250)
T ss_pred CCCceEEEEECCccccHHHHHHHHhCCccceEEecCCCchhHHHH----HHHHhcCCEEEEeccCCcccCCCCCCCCccc
Confidence 567788899999999976555 124455566666666654 4577888877 33410 0012567776655
Q ss_pred CCccccccchHHHHHHHhc-----------CC-CcCchhH-hhhhhhcCCCceEEEEeecCCCccccHHhHHHHHHHHHH
Q 010407 85 GAGRIFAQGAKLVDLALAS-----------GK-IYQDEGF-NYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASE 151 (511)
Q Consensus 85 GaGRiv~q~l~rI~~ai~~-----------g~-~~~n~~~-~~~~~~~~~~~lHl~GLlSdGGVHsh~~Hl~al~~~a~~ 151 (511)
+-= ...-..||.+|..+ || |-+|+.. +.+++.++. -+|+-| |-|-- -+-.+ -++|++
T Consensus 102 ~~s--~~e~~~rl~~a~~~v~~~~GlnNhmGs~~tsn~~aM~~~m~~Lk~--r~l~fl--Ds~T~---a~S~a-~~iAk~ 171 (250)
T COG2861 102 GMS--AEEILRRLRKAMNKVPDAVGLNNHMGSRFTSNEDAMEKLMEALKE--RGLYFL--DSGTI---ANSLA-GKIAKE 171 (250)
T ss_pred CCC--HHHHHHHHHHHHhhCccceeehhhhhhhhcCcHHHHHHHHHHHHH--CCeEEE--ccccc---ccchh-hhhHhh
Confidence 421 22334566666653 33 3355443 446666622 123322 32221 12223 468889
Q ss_pred cCCCeEEEEEeecCCCCCCCchHHHHHHHHHHHHHH
Q 010407 152 RGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAEL 187 (511)
Q Consensus 152 ~g~~~v~vH~~~DGRDt~p~s~~~yl~~l~~~~~~~ 187 (511)
.||+.+.=|+|+|+-|+ +.+-.+-++.++..-++.
T Consensus 172 ~gVp~~~rdvfLD~e~~-~~~V~kql~~~~~~Ark~ 206 (250)
T COG2861 172 IGVPVIKRDVFLDDEDT-EAAVLKQLDAAEKLARKN 206 (250)
T ss_pred cCCceeeeeeeecCcCC-HHHHHHHHHHHHHHHHhc
Confidence 99999999999999999 666666666666654443
No 55
>TIGR03397 acid_phos_Burk acid phosphatase, Burkholderia-type. A member of this family, AcpA from Burkholderia mallei, has been charactized as a surface-bound glycoprotein with acid phosphatase activity, as can be shown with the colorigenic substrate 5-bromo-4-chloro-3-indolyl phosphate. This family shares regions of sequence similarity with phosphocholine-preferring phospholipase C enzymes (TIGR03396) from many of the same species.
Probab=77.22 E-value=11 Score=41.81 Aligned_cols=57 Identities=18% Similarity=0.137 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHhcC----CEEEEeCC-CCChhhhhccCCCCCCcccCCCcccCCCCCCCCceEEEEcCC
Q 010407 441 CKAADEAVKIIIDAIEKVG----GIYLVTAD-HGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVRFLNCLLE 509 (511)
Q Consensus 441 IE~vD~~Lg~ll~al~~~g----~~lIITAD-HGN~E~m~~~D~~~~~~~~~g~p~~~t~HT~npVP~ii~g~~ 509 (511)
|+..|..|++|+++|++.+ ..||||+| ||..- | ...| +.+.+ ---...||+|++++.
T Consensus 365 v~~gD~~vg~vl~aL~~~p~w~NTlII~T~DENGG~~-----D-hv~p--Pk~~~----~ggG~RVP~IVisP~ 426 (483)
T TIGR03397 365 VAAGDRHIADVIAHLQKSPQWKNMVVIVTYDENGGFW-----D-HVAP--PKGDR----WGPGTRIPAIVVSPF 426 (483)
T ss_pred HHHHHHHHHHHHHHHHhCccccCcEEEEEEECCCCcC-----c-CCCC--CCcCC----CCCccEEEEEEEECC
Confidence 8899999999999998765 48999999 88621 1 0000 11111 122568999999874
No 56
>PRK09453 phosphodiesterase; Provisional
Probab=72.21 E-value=11 Score=35.39 Aligned_cols=68 Identities=16% Similarity=0.104 Sum_probs=41.1
Q ss_pred EEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEE--eecCCCCCCCchHHHHHHHHHHHHHHhcCCCCceEEEEeec
Q 010407 127 IGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHI--LTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGR 202 (511)
Q Consensus 127 ~GLlSdGGVHsh~~Hl~al~~~a~~~g~~~v~vH~--~~DGRDt~p~s~~~yl~~l~~~~~~~~~~~~~~~iasv~GR 202 (511)
++++|| +|.....+.++++.+++.+++.| ||+ +.|.-...+.......+++.+.++++ +. ++..|.|-
T Consensus 3 i~viSD--~Hg~~~~~~~~l~~~~~~~~d~i-i~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~---~~--~v~~V~GN 72 (182)
T PRK09453 3 LMFASD--THGSLPATEKALELFAQSGADWL-VHLGDVLYHGPRNPLPEGYAPKKVAELLNAY---AD--KIIAVRGN 72 (182)
T ss_pred EEEEEe--ccCCHHHHHHHHHHHHhcCCCEE-EEcccccccCcCCCCccccCHHHHHHHHHhc---CC--ceEEEccC
Confidence 578999 89999999999999989888655 774 33321111221111234454545554 43 56666664
No 57
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=70.10 E-value=18 Score=34.53 Aligned_cols=72 Identities=11% Similarity=0.141 Sum_probs=43.1
Q ss_pred eEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEEeecCCCCCCCchHHHHHHHHHHHHHHhcCCCCceEEEEeecc
Q 010407 124 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRM 203 (511)
Q Consensus 124 lHl~GLlSdGGVHsh~~Hl~al~~~a~~~g~~~v~vH~~~DGRDt~p~s~~~yl~~l~~~~~~~~~~~~~~~iasv~GRy 203 (511)
-+++=|+|||.-+-- .-+.++++.++++|| +|++=.| |-+ . +.|+ .+++. -.|||
T Consensus 108 ~~iiil~sd~~~~~~-~~~~~~~~~l~~~~I-~v~~Igi--G~~------~---~~L~-~ia~~-----------tgG~~ 162 (183)
T cd01453 108 REVLIIFSSLSTCDP-GNIYETIDKLKKENI-RVSVIGL--SAE------M---HICK-EICKA-----------TNGTY 162 (183)
T ss_pred eEEEEEEcCCCcCCh-hhHHHHHHHHHHcCc-EEEEEEe--chH------H---HHHH-HHHHH-----------hCCee
Confidence 446667888765422 124567889999998 4655555 411 1 2222 22332 25999
Q ss_pred cccccCCCCChHHHHHHHHHHH
Q 010407 204 YVTMDRYENDWDVVKRGWDAQV 225 (511)
Q Consensus 204 yvaMDR~d~rw~rv~~ay~a~~ 225 (511)
|.+.|. +.++..|..++
T Consensus 163 ~~~~~~-----~~l~~~~~~~~ 179 (183)
T cd01453 163 KVILDE-----THLKELLLEHV 179 (183)
T ss_pred EeeCCH-----HHHHHHHHhcC
Confidence 988887 67777666543
No 58
>COG4255 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.49 E-value=22 Score=36.62 Aligned_cols=127 Identities=13% Similarity=0.056 Sum_probs=78.8
Q ss_pred ccccHHHHHHhCCCcEEeeecCCccccEEEeeCCcccccccCCCceEEeecCCccccccCCcCCCHHHHHHHHHHHHHcC
Q 010407 334 IDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSR 413 (511)
Q Consensus 334 ~~~tl~evLs~~Gl~q~riAEteKyahvt~FfnGG~~~~~~~~ge~r~li~sp~V~tyDl~pemsa~ev~d~~i~al~~~ 413 (511)
+.+-+.-.|.+|++|.-|.|.+...-|..|||+.|- ..|+. -|-|+.+-.. | +......+.-+.- ..
T Consensus 166 ~qtEVQm~l~~HpvN~~R~aRGl~~~NslWlwgqG~-~v~a~------tv~~r~h~~~---r--~~~~l~RA~e~ta-a~ 232 (318)
T COG4255 166 VQTEVQMWLAAHPVNHNRKARGLPELNSLWLWGQGG-TVFAD------TVWSRFHGDR---R--ALPDLFRAYEETA-AH 232 (318)
T ss_pred HHHHHHHHHHhCccchhhhhcCCccccceeEecCCc-ccccc------cccccccccc---c--chhHHHHHHHHhh-cc
Confidence 344455679999999999999999999999999884 22311 1222211000 0 1112333222221 12
Q ss_pred CCcEEEEecCCcccCCC---CCCHHHHHHHHHHHHH-HHHHHHHHHHhcC---CEEEEeCCCCChhhh
Q 010407 414 RFHQVRVNLPNSDMVGH---TGDIEATVVACKAADE-AVKIIIDAIEKVG---GIYLVTADHGNAEDM 474 (511)
Q Consensus 414 ~yDfV~vnfanpDmvGH---tgd~ea~~kAIE~vD~-~Lg~ll~al~~~g---~~lIITADHGN~E~m 474 (511)
..|+. =+.-..|-.+| ++|.+.+++++++.|+ .+..+++++..-. ..|++-.|||-.--|
T Consensus 233 l~Dlt-h~~~~lddlr~~~lt~dr~~~~~~L~q~~~~wfAP~~~A~~~G~ik~l~~vldg~~G~~lt~ 299 (318)
T COG4255 233 LPDLT-HHILFLDDLRLTALTGDRERYAEALQQWEEDWFAPIYEAVRTGKIKRLDIVLDGQHGGTLTF 299 (318)
T ss_pred Cccch-hhHHHHHhcccccccccHHHHHHHHHHhHHhHhHHHHHHHhcCCcceEEEEeccCCCceeEE
Confidence 24442 22223455688 4899999999999997 8899999997521 245778888875333
No 59
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=67.14 E-value=16 Score=33.82 Aligned_cols=24 Identities=33% Similarity=0.290 Sum_probs=22.3
Q ss_pred HHhHHHHHHHHHHcCCCeEEEEEe
Q 010407 139 LDQLQLLLKGASERGAKRIRLHIL 162 (511)
Q Consensus 139 ~~Hl~al~~~a~~~g~~~v~vH~~ 162 (511)
.+++...+++|++.|++.+.+|..
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g 93 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSG 93 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECT
T ss_pred HHHHHHHHHHHHHhCCCceeecCc
Confidence 899999999999999999988865
No 60
>KOG3731 consensus Sulfatases [Carbohydrate transport and metabolism]
Probab=66.27 E-value=17 Score=40.28 Aligned_cols=37 Identities=19% Similarity=0.383 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC----CEEEEeCCCCC
Q 010407 434 IEATVVACKAADEAVKIIIDAIEKVG----GIYLVTADHGN 470 (511)
Q Consensus 434 ~ea~~kAIE~vD~~Lg~ll~al~~~g----~~lIITADHGN 470 (511)
+....+.++.||..+.+|.+.+.+.| ..||-|||||-
T Consensus 272 ~rkrlQtlqSvd~sve~l~n~l~elgeLdnTyivytsDhGy 312 (541)
T KOG3731|consen 272 PRKRLQTLQSVDDSVERLYNLLGELGELDNTYIVYTSDHGY 312 (541)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhcccceEEEEEcCCcc
Confidence 56677778888888888888776655 37888999998
No 61
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=62.65 E-value=28 Score=34.62 Aligned_cols=81 Identities=11% Similarity=0.092 Sum_probs=49.7
Q ss_pred cHHhHHHHHHHHHHcCCCeEEEEEeecCCCCCCC-----chHHHHHHHHHHHHHHhcCCCCceEEEEeecccccccCCCC
Q 010407 138 RLDQLQLLLKGASERGAKRIRLHILTDGRDVLDG-----SSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYEN 212 (511)
Q Consensus 138 h~~Hl~al~~~a~~~g~~~v~vH~~~DGRDt~p~-----s~~~yl~~l~~~~~~~~~~~~~~~iasv~GRyyvaMDR~d~ 212 (511)
-.+.+..+.+.+++.|++ +.+|+-...-=..|. .+.+++++.-+..+.+ |+. .|..-.|++. ..+| ..
T Consensus 43 ~~~~~~~l~~~~~~~gl~-ls~h~p~~~nl~s~d~~~r~~~~~~l~~~i~~A~~l---Ga~-~vv~h~g~~~-~~~~-e~ 115 (273)
T smart00518 43 SEETAEKFKEALKENNID-VSVHAPYLINLASPDKEKVEKSIERLIDEIKRCEEL---GIK-ALVFHPGSYL-KQSK-EE 115 (273)
T ss_pred CHHHHHHHHHHHHHcCCC-EEEECCceecCCCCCHHHHHHHHHHHHHHHHHHHHc---CCC-EEEEcccccc-CCCH-HH
Confidence 345688888899999994 889974322212221 2334555555555555 764 5666678775 5555 66
Q ss_pred ChHHHHHHHHHHH
Q 010407 213 DWDVVKRGWDAQV 225 (511)
Q Consensus 213 rw~rv~~ay~a~~ 225 (511)
.|++..++++.++
T Consensus 116 ~~~~~~~~l~~l~ 128 (273)
T smart00518 116 ALNRIIESLNEVI 128 (273)
T ss_pred HHHHHHHHHHHHH
Confidence 6777666666554
No 62
>PF07394 DUF1501: Protein of unknown function (DUF1501); InterPro: IPR010869 This family contains a number of hypothetical bacterial proteins of unknown function approximately 400 residues long.
Probab=59.93 E-value=79 Score=33.53 Aligned_cols=80 Identities=18% Similarity=0.133 Sum_probs=57.0
Q ss_pred CCCcEEEEecCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC----CEEEEeCCCCChhhhhccCCCCCCcccCC
Q 010407 413 RRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVG----GIYLVTADHGNAEDMVKRNKSGEPLLKDG 488 (511)
Q Consensus 413 ~~yDfV~vnfanpDmvGHtgd~ea~~kAIE~vD~~Lg~ll~al~~~g----~~lIITADHGN~E~m~~~D~~~~~~~~~g 488 (511)
..-.+++|++...|+ |.+.......-+..+|+.|..+++.|++.| .+++++||-|=.-. .++
T Consensus 244 ~g~~v~~V~~gGwDT--H~~~~~~~~~ll~~L~~alaaf~~dL~~~g~~d~t~vv~~SEFGRt~~------------~N~ 309 (392)
T PF07394_consen 244 AGVRVVFVSLGGWDT--HSNQGNRHARLLPELDQALAAFIQDLKERGLLDDTLVVTMSEFGRTPR------------ENG 309 (392)
T ss_pred cCCEEEEECCCCccC--ccccHhHHHHHHHHHHHHHHHHHHHHHhcCCcCceEEEEeeecCCCcc------------cCC
Confidence 456899999999998 444444556667999999999999999866 38888999997311 233
Q ss_pred CcccCCCCCCCCceEEEEcC
Q 010407 489 NIQVLTSHTLKPVRFLNCLL 508 (511)
Q Consensus 489 ~p~~~t~HT~npVP~ii~g~ 508 (511)
+ ..|.|-..-=+.++.|.
T Consensus 310 ~--~GtDH~g~g~~~~v~GG 327 (392)
T PF07394_consen 310 S--GGTDHWGWGGSMLVAGG 327 (392)
T ss_pred C--CCCCCCCCcceEEEeCC
Confidence 3 36899333335666664
No 63
>TIGR02335 hydr_PhnA phosphonoacetate hydrolase. This family consists of examples of phosphonoacetate hydrolase, an enzyme specific for the cleavage of the C-P bond in phosphonoacetate. Phosphonates are organic compounds with a direct C-P bond that is far less labile that the C-O-P bonds of phosphate attachment sites. Phosphonates may be degraded for phosphorus and energy by broad spectrum C-P lyase encoded by large operon or by specific enzymes for some of the more common phosphonates in nature. This family represents an enzyme from the latter category. It may be found encoded near genes for phosphonate transport and for pther specific phosphonatases.
Probab=59.92 E-value=6.5 Score=42.58 Aligned_cols=60 Identities=12% Similarity=0.066 Sum_probs=38.1
Q ss_pred CCcEEEEEEeccCCCCCCCCCccccCCCccHHHHHhhCCCCceeeeccccccCCCCCCCCCcchhhhcccCCcc
Q 010407 15 NNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGR 88 (511)
Q Consensus 15 ~~~v~L~IlDGwG~~~~~~~NAi~~A~tp~~d~l~~~~p~~~~~L~asG~~VGLP~~gqmGNSEVGH~~iGaGR 88 (511)
+++||+|.+||+|.. .-..++....+||+.+|.++--+ ..+. .++| --|-.-|.+|+.|.
T Consensus 12 ~~~vvvi~vDGl~~~--~l~~~~~~g~~P~L~~l~~~G~~--~~~~-----s~~P-----s~T~p~~tSi~TG~ 71 (408)
T TIGR02335 12 QRPTVVICVDGCDPE--YINRGIADGVAPFIAELTGFGTV--LTAD-----CVVP-----SFTNPNNLSIVTGA 71 (408)
T ss_pred CCCEEEEEeCCCCHH--HHHhhhhcCCCchHHHHHhcCce--eecc-----CCCC-----CcccccceeeecCC
Confidence 467999999999953 12234445689999999986311 2222 3466 24555566666664
No 64
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=56.28 E-value=31 Score=31.72 Aligned_cols=55 Identities=16% Similarity=0.160 Sum_probs=35.0
Q ss_pred Hhhhhhhc-C-CCceEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEEeecCCCCC
Q 010407 112 FNYIKPSF-E-TGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVL 169 (511)
Q Consensus 112 ~~~~~~~~-~-~~~lHl~GLlSdGGVHsh~~Hl~al~~~a~~~g~~~v~vH~~~DGRDt~ 169 (511)
|..+.+.+ + .+.-+.+=|+|||--++-..+.....+.+++.|+ .||++.=|.+.+
T Consensus 89 l~~a~~~l~~~~~~~~~iiliTDG~~~~g~~~~~~~~~~~~~~gi---~i~~i~ig~~~~ 145 (180)
T cd01467 89 IGLAIKRLKNSEAKERVIVLLTDGENNAGEIDPATAAELAKNKGV---RIYTIGVGKSGS 145 (180)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHCCC---EEEEEEecCCCC
Confidence 44444444 2 2345788899999766543444455677778776 578887776543
No 65
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=55.09 E-value=24 Score=35.06 Aligned_cols=31 Identities=23% Similarity=0.181 Sum_probs=26.1
Q ss_pred cHHhHHHHHHHHHHcCCCeEEEEEeecCCCC
Q 010407 138 RLDQLQLLLKGASERGAKRIRLHILTDGRDV 168 (511)
Q Consensus 138 h~~Hl~al~~~a~~~g~~~v~vH~~~DGRDt 168 (511)
.++++...+++|++.|++.+.+|....|+..
T Consensus 88 ~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~ 118 (275)
T PRK09856 88 SLDMIKLAMDMAKEMNAGYTLISAAHAGYLT 118 (275)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCCCCCCC
Confidence 5689999999999999999989887666543
No 66
>COG3379 Uncharacterized conserved protein [Function unknown]
Probab=54.31 E-value=20 Score=39.15 Aligned_cols=67 Identities=18% Similarity=0.180 Sum_probs=49.8
Q ss_pred HHHHHHHcCCCcEEEEecCCcccCCCCC----C------------HHHH-HHHHHHHHHHHHHHHHHHHhcCCEEEEeCC
Q 010407 405 RAKKAILSRRFHQVRVNLPNSDMVGHTG----D------------IEAT-VVACKAADEAVKIIIDAIEKVGGIYLVTAD 467 (511)
Q Consensus 405 ~~i~al~~~~yDfV~vnfanpDmvGHtg----d------------~ea~-~kAIE~vD~~Lg~ll~al~~~g~~lIITAD 467 (511)
.+.+++....+|+...-+-.+|-+=|.- | +|.+ -+--+-||+.+|.+++.+.-....++|.||
T Consensus 182 ~v~~~~~~k~wD~~~~v~~gTDRv~H~~w~y~dp~H~lypg~~n~yEnvi~eyy~LvD~~IG~~~~~i~~~e~~l~vvSD 261 (471)
T COG3379 182 VVKEYLSPKEWDCFGFVMIGTDRVHHALWKYLDPEHPLYPGEQNKYENVIPEYYSLVDKYIGLKLEIIGFEETYLTVVSD 261 (471)
T ss_pred HHHHhhCcccccceeEEEEehhHHhhhhhhhcCccccCCcccCchHhHHHHHHHHHHHHHHHHHHHhccccceEEEEEec
Confidence 3445555667898888888899887762 1 2332 334578999999999999755789999999
Q ss_pred CCCh
Q 010407 468 HGNA 471 (511)
Q Consensus 468 HGN~ 471 (511)
||.-
T Consensus 262 HGf~ 265 (471)
T COG3379 262 HGFK 265 (471)
T ss_pred cccc
Confidence 9984
No 67
>COG2194 Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]
Probab=52.86 E-value=23 Score=40.14 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC--CEEEEeCCCCCh
Q 010407 435 EATVVACKAADEAVKIIIDAIEKVG--GIYLVTADHGNA 471 (511)
Q Consensus 435 ea~~kAIE~vD~~Lg~ll~al~~~g--~~lIITADHGN~ 471 (511)
..+-..|--.|..|.++++.+++.+ ..+|=+||||=.
T Consensus 419 N~YDNtilYtD~~L~~vi~~Lk~~~~~~~liY~SDHGEs 457 (555)
T COG2194 419 NCYDNTILYTDYFLSKLIDQLKDKKDNTSLIYFSDHGES 457 (555)
T ss_pred HhhhchhhhhHHHHHHHHHHHHhCCCCeEEEEEcCccHh
Confidence 3455578889999999999999885 499999999973
No 68
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=51.41 E-value=43 Score=33.22 Aligned_cols=121 Identities=18% Similarity=0.281 Sum_probs=72.9
Q ss_pred hcccCCccccccchHHHHHHHhcC-CCcCchhHhh-hhhhc-CCCceEEEEeecCCCccccHHhHHHHHHHHHHcCCCeE
Q 010407 81 HNALGAGRIFAQGAKLVDLALASG-KIYQDEGFNY-IKPSF-ETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRI 157 (511)
Q Consensus 81 H~~iGaGRiv~q~l~rI~~ai~~g-~~~~n~~~~~-~~~~~-~~~~lHl~GLlSdGGVHsh~~Hl~al~~~a~~~g~~~v 157 (511)
.+.+|||-|.- .....++++.| +|.=.|.+.. +++.+ +.+-+.+- |+|+--+ +..|.+.|++-|
T Consensus 67 ~~~vGaGTV~~--~~~~~~a~~aGA~FivsP~~~~~v~~~~~~~~i~~iP------G~~T~~E-----~~~A~~~Gad~v 133 (213)
T PRK06552 67 EVLIGAGTVLD--AVTARLAILAGAQFIVSPSFNRETAKICNLYQIPYLP------GCMTVTE-----IVTALEAGSEIV 133 (213)
T ss_pred CeEEeeeeCCC--HHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEEC------CcCCHHH-----HHHHHHcCCCEE
Confidence 48999999975 66789999988 4546666654 55555 44555555 5665433 334557888644
Q ss_pred EEEEeecCCCCCCCchHHHHHHHHHHHH----------------HHhcCCCCceEEEEeecccccccCCCCChHHHHHHH
Q 010407 158 RLHILTDGRDVLDGSSVGFVETIEKDLA----------------ELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGW 221 (511)
Q Consensus 158 ~vH~~~DGRDt~p~s~~~yl~~l~~~~~----------------~~~~~~~~~~iasv~GRyyvaMDR~d~rw~rv~~ay 221 (511)
=+|- ..+ -+.+||+.|..-+. ++.+.|. ....+++-.+ .-.. .++|+.+++.-
T Consensus 134 --klFP----a~~-~G~~~ik~l~~~~p~ip~~atGGI~~~N~~~~l~aGa--~~vavgs~l~-~~~~-~~~~~~i~~~a 202 (213)
T PRK06552 134 --KLFP----GST-LGPSFIKAIKGPLPQVNVMVTGGVNLDNVKDWFAAGA--DAVGIGGELN-KLAS-QGDFDLITEKA 202 (213)
T ss_pred --EECC----ccc-CCHHHHHHHhhhCCCCEEEEECCCCHHHHHHHHHCCC--cEEEEchHHh-Cccc-cCCHHHHHHHH
Confidence 3453 223 45888887764332 2222343 3444555555 4445 67898887755
Q ss_pred HHHH
Q 010407 222 DAQV 225 (511)
Q Consensus 222 ~a~~ 225 (511)
+.++
T Consensus 203 ~~~~ 206 (213)
T PRK06552 203 KKYM 206 (213)
T ss_pred HHHH
Confidence 5443
No 69
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=51.36 E-value=71 Score=31.21 Aligned_cols=77 Identities=17% Similarity=0.394 Sum_probs=53.1
Q ss_pred cccHHhHHHHHHHHHHcCCCeEEEEE-eecCCCCCCCchHHHHHHHH----------HHHHHHhcCCCCceEEEEeeccc
Q 010407 136 HSRLDQLQLLLKGASERGAKRIRLHI-LTDGRDVLDGSSVGFVETIE----------KDLAELRGKGVDAQIASGGGRMY 204 (511)
Q Consensus 136 Hsh~~Hl~al~~~a~~~g~~~v~vH~-~~DGRDt~p~s~~~yl~~l~----------~~~~~~~~~~~~~~iasv~GRyy 204 (511)
-||+-+|+.+++.+++.| +.||||+ +.+|-- .-.-+..||.+.- ..++...+.|. . ..=|+|
T Consensus 31 ~~~i~~ik~ivk~lK~~g-K~vfiHvDLv~Gl~-~~e~~i~fi~~~~~pdGIISTk~~~i~~Akk~~~---~--aIqR~F 103 (181)
T COG1954 31 TGHILNIKEIVKKLKNRG-KTVFIHVDLVEGLS-NDEVAIEFIKEVIKPDGIISTKSNVIKKAKKLGI---L--AIQRLF 103 (181)
T ss_pred echhhhHHHHHHHHHhCC-cEEEEEeHHhcccC-CchHHHHHHHHhccCCeeEEccHHHHHHHHHcCC---c--eeeeee
Confidence 369999999999999998 5799998 556765 5556777877543 11111111132 1 357999
Q ss_pred ccccCCCCChHHHHHHHHHHH
Q 010407 205 VTMDRYENDWDVVKRGWDAQV 225 (511)
Q Consensus 205 vaMDR~d~rw~rv~~ay~a~~ 225 (511)
..|+ --.+++++.+-
T Consensus 104 -ilDS-----~Al~~~~~~i~ 118 (181)
T COG1954 104 -ILDS-----IALEKGIKQIE 118 (181)
T ss_pred -eecH-----HHHHHHHHHHH
Confidence 9999 77778777665
No 70
>PRK13685 hypothetical protein; Provisional
Probab=50.37 E-value=53 Score=34.18 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=24.2
Q ss_pred EEEEeecCCCccccH-----HhHHHHHHHHHHcCCCeEEEEEeecCC
Q 010407 125 HLIGLLSDGGVHSRL-----DQLQLLLKGASERGAKRIRLHILTDGR 166 (511)
Q Consensus 125 Hl~GLlSdGGVHsh~-----~Hl~al~~~a~~~g~~~v~vH~~~DGR 166 (511)
+++ |+|||.-.+-. ......++.+++.|++ ||.+.=|.
T Consensus 196 ~II-LlTDG~~~~~~~~~~~~~~~~aa~~a~~~gi~---i~~Ig~G~ 238 (326)
T PRK13685 196 RIV-LMSDGKETVPTNPDNPRGAYTAARTAKDQGVP---ISTISFGT 238 (326)
T ss_pred EEE-EEcCCCCCCCCCCCCcccHHHHHHHHHHcCCe---EEEEEECC
Confidence 454 99999877532 2234567888888873 55555343
No 71
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=47.30 E-value=98 Score=35.41 Aligned_cols=56 Identities=14% Similarity=0.248 Sum_probs=33.4
Q ss_pred CchhHhhhhhhc-C----CCceEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEEeecC
Q 010407 108 QDEGFNYIKPSF-E----TGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDG 165 (511)
Q Consensus 108 ~n~~~~~~~~~~-~----~~~lHl~GLlSdGGVHsh~~Hl~al~~~a~~~g~~~v~vH~~~DG 165 (511)
-..+|..+.+.+ . .+...++=|+|||--++- +.....++.+++.|++ |++=.+.+|
T Consensus 129 ig~AL~~Aae~L~sr~~R~nvpKVVILLTDG~sns~-~dvleaAq~LR~~GVe-I~vIGVG~g 189 (576)
T PTZ00441 129 MTDALLEVRKHLNDRVNRENAIQLVILMTDGIPNSK-YRALEESRKLKDRNVK-LAVIGIGQG 189 (576)
T ss_pred HHHHHHHHHHHHhhcccccCCceEEEEEecCCCCCc-ccHHHHHHHHHHCCCE-EEEEEeCCC
Confidence 334555444444 2 235678899999986544 3444456788899995 444334333
No 72
>PRK01060 endonuclease IV; Provisional
Probab=46.47 E-value=78 Score=31.54 Aligned_cols=80 Identities=13% Similarity=-0.008 Sum_probs=47.9
Q ss_pred cHHhHHHHHHHHHHcCCC--eEEEEEeecCCCCCCCc-----hHHHHHHHHHHHHHHhcCCCCceEEEEeecccccccCC
Q 010407 138 RLDQLQLLLKGASERGAK--RIRLHILTDGRDVLDGS-----SVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRY 210 (511)
Q Consensus 138 h~~Hl~al~~~a~~~g~~--~v~vH~~~DGRDt~p~s-----~~~yl~~l~~~~~~~~~~~~~~~iasv~GRyyvaMDR~ 210 (511)
--+.+.++-+++++.|++ .+.+|+-...+-..|.. +.+++++.-+..+++ |+. .|..-.|+++ -..+.
T Consensus 45 ~~~~~~~lk~~~~~~gl~~~~~~~h~~~~~nl~~~d~~~r~~s~~~~~~~i~~A~~l---ga~-~vv~h~G~~~-~~~~~ 119 (281)
T PRK01060 45 EELNIEAFKAACEKYGISPEDILVHAPYLINLGNPNKEILEKSRDFLIQEIERCAAL---GAK-LLVFHPGSHL-GDIDE 119 (281)
T ss_pred CHHHHHHHHHHHHHcCCCCCceEEecceEecCCCCCHHHHHHHHHHHHHHHHHHHHc---CCC-EEEEcCCcCC-CCCcH
Confidence 334577777888899995 37899977666666644 244555555555555 764 5666678765 33331
Q ss_pred CCChHHHHHHHH
Q 010407 211 ENDWDVVKRGWD 222 (511)
Q Consensus 211 d~rw~rv~~ay~ 222 (511)
+..|++..++.+
T Consensus 120 ~~~~~~~~e~l~ 131 (281)
T PRK01060 120 EDCLARIAESLN 131 (281)
T ss_pred HHHHHHHHHHHH
Confidence 224444444443
No 73
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=44.72 E-value=1.1e+02 Score=31.19 Aligned_cols=54 Identities=17% Similarity=0.377 Sum_probs=33.1
Q ss_pred ceEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEE-eecCCCCCCCchHHHHHHHHHHHHHH
Q 010407 123 TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHI-LTDGRDVLDGSSVGFVETIEKDLAEL 187 (511)
Q Consensus 123 ~lHl~GLlSdGGVHsh~~Hl~al~~~a~~~g~~~v~vH~-~~DGRDt~p~s~~~yl~~l~~~~~~~ 187 (511)
.+|+.-=+|| ++.+...++.|+++|. +|.+.+ ++|+ +..-.+|+.++-+.+.+.
T Consensus 107 ~iri~~~~~~------~~~~~~~i~~ak~~G~-~v~~~i~~~~~----~~~~~~~~~~~~~~~~~~ 161 (275)
T cd07937 107 IFRIFDALND------VRNLEVAIKAVKKAGK-HVEGAICYTGS----PVHTLEYYVKLAKELEDM 161 (275)
T ss_pred EEEEeecCCh------HHHHHHHHHHHHHCCC-eEEEEEEecCC----CCCCHHHHHHHHHHHHHc
Confidence 5677655555 7888888888888886 455543 2444 333445555554444554
No 74
>PF03279 Lip_A_acyltrans: Bacterial lipid A biosynthesis acyltransferase; InterPro: IPR004960 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A []. The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS []. The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids []. These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. The bacterial lipid A biosynthesis protein, or lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2.3.1 from EC, transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA during lipopolysaccharide core biosynthesis.; GO: 0016746 transferase activity, transferring acyl groups, 0009244 lipopolysaccharide core region biosynthetic process, 0016021 integral to membrane
Probab=44.58 E-value=86 Score=31.71 Aligned_cols=124 Identities=21% Similarity=0.238 Sum_probs=75.7
Q ss_pred ccccccCCCCCCCCCcchhhhcccCC-ccc---cc--cchHHHHHHHhcC-------CCcCchhHhhhhhhcCCCceEEE
Q 010407 61 AHGSAVGLPTEDDMGNSEVGHNALGA-GRI---FA--QGAKLVDLALASG-------KIYQDEGFNYIKPSFETGTLHLI 127 (511)
Q Consensus 61 asG~~VGLP~~gqmGNSEVGH~~iGa-GRi---v~--q~l~rI~~ai~~g-------~~~~n~~~~~~~~~~~~~~lHl~ 127 (511)
+.|+.|=|- .+=+||-|..-..++. |.. ++ +....+++-+.+. -+..+..++++++.+++|. ++
T Consensus 118 ~~g~gvIl~-t~H~GnwE~~~~~l~~~~~~~~~i~~~~~n~~~~~~~~~~R~~~g~~~i~~~~~~~~~~~~Lk~g~--~v 194 (295)
T PF03279_consen 118 AEGRGVILL-TGHFGNWELAGRALARRGPPVAVIYRPQKNPYIDRLLNKLRERFGIELIPKGEGIRELIRALKEGG--IV 194 (295)
T ss_pred hcCCCCEEe-CcCcChHHHHHHHHHhhCCceEEEecCCccHhHHHHHHHHHHhcCCeEecchhhHHHHHHHhccCC--EE
Confidence 466777666 7889999986555432 211 11 2234555544322 2234444677777774443 99
Q ss_pred EeecCCCcccc-----------HHhHHHHHHHHHHcCCCeEEEEEeecCCC------------CCCC-----chHHHHHH
Q 010407 128 GLLSDGGVHSR-----------LDQLQLLLKGASERGAKRIRLHILTDGRD------------VLDG-----SSVGFVET 179 (511)
Q Consensus 128 GLlSdGGVHsh-----------~~Hl~al~~~a~~~g~~~v~vH~~~DGRD------------t~p~-----s~~~yl~~ 179 (511)
++++|...... ..-......+|.+.|++=|.+++.-++.- .++. ....|.+.
T Consensus 195 ~~l~Dq~~~~~~~~~v~FfG~~a~~~~g~a~lA~~~~apvvp~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 274 (295)
T PF03279_consen 195 GLLGDQDPGKKDGVFVPFFGRPASTPTGPARLARKTGAPVVPVFAYREPDGSHYRIEIEPPLDFPSSEDIEELTQRYNDR 274 (295)
T ss_pred EEEECCCCCCCCceEEeECCeecccccHHHHHHHHhCCcEEEEEEEEeCCCCEEEEEEeecccCCccchHHHHHHHHHHH
Confidence 99999765443 22345678899999998788888776554 1222 34556666
Q ss_pred HHHHHHHH
Q 010407 180 IEKDLAEL 187 (511)
Q Consensus 180 l~~~~~~~ 187 (511)
||+.+++.
T Consensus 275 lE~~Ir~~ 282 (295)
T PF03279_consen 275 LEEWIREH 282 (295)
T ss_pred HHHHHHcC
Confidence 77766655
No 75
>TIGR03417 chol_sulfatase choline-sulfatase.
Probab=43.39 E-value=25 Score=38.77 Aligned_cols=32 Identities=9% Similarity=0.087 Sum_probs=24.8
Q ss_pred EEEEEEeccCCCCC-CCCC-ccccCCCccHHHHHhh
Q 010407 18 VAVVVLDGWGEFKP-DKYN-CIHVADTPTMDSFKKS 51 (511)
Q Consensus 18 v~L~IlDGwG~~~~-~~~N-Ai~~A~tp~~d~l~~~ 51 (511)
||||+.|-++...- .-|| . ..+|||||+|.++
T Consensus 5 IllI~~Dd~r~d~lg~~G~~~--~~~TPnLD~LA~e 38 (500)
T TIGR03417 5 ILILMADQLNGTLLPDYGPAR--WLHAPNLKRLAAR 38 (500)
T ss_pred EEEEEeCCCCccccccCCCCC--cCCCCcHHHHHHh
Confidence 99999999986543 2355 3 3689999999876
No 76
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=43.38 E-value=82 Score=28.39 Aligned_cols=39 Identities=31% Similarity=0.419 Sum_probs=25.6
Q ss_pred eEEEEeecCCCccccH---HhHHHHHHHHHHcCCCeEEEEEeecCC
Q 010407 124 LHLIGLLSDGGVHSRL---DQLQLLLKGASERGAKRIRLHILTDGR 166 (511)
Q Consensus 124 lHl~GLlSdGGVHsh~---~Hl~al~~~a~~~g~~~v~vH~~~DGR 166 (511)
-+++ |+|||...+.. +.+..+++.+++.| |.||+|.=|.
T Consensus 98 ~~iv-l~TDG~~~~~~~~~~~~~~~~~~~~~~~---v~i~~i~~g~ 139 (170)
T cd01465 98 NRIL-LATDGDFNVGETDPDELARLVAQKRESG---ITLSTLGFGD 139 (170)
T ss_pred eEEE-EEeCCCCCCCCCCHHHHHHHHHHhhcCC---eEEEEEEeCC
Confidence 5565 99999876543 44555555555555 5688888883
No 77
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=43.07 E-value=26 Score=37.01 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=27.8
Q ss_pred eecCCCccccHHhHHHHHHHHHHcCCCeEEEEEeecCCC
Q 010407 129 LLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 167 (511)
Q Consensus 129 LlSdGGVHsh~~Hl~al~~~a~~~g~~~v~vH~~~DGRD 167 (511)
|+|=||+|| +|+++..-.|++.|++-|+ +.++.-
T Consensus 67 lvT~GgiQS--Nh~r~tAavA~~lGl~~v~---ile~~~ 100 (323)
T COG2515 67 LVTYGGIQS--NHVRQTAAVAAKLGLKCVL---ILENIE 100 (323)
T ss_pred EEEecccch--hHHHHHHHHHHhcCCcEEE---EEeccc
Confidence 689999988 7999999999999998764 445543
No 78
>KOG1434 consensus Meiotic recombination protein Dmc1 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=42.99 E-value=4.9 Score=41.57 Aligned_cols=63 Identities=22% Similarity=0.393 Sum_probs=39.3
Q ss_pred CCEEEEee----cCcchHHHHHHHcc-cCCCCCCccCCCCCeeEEeeecccCCCCCccccccCCccccccHHHHHHhCCC
Q 010407 273 GDAVVTFN----FRADRMVMLAKALE-YEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGV 347 (511)
Q Consensus 273 gD~vif~N----fR~DR~rqi~~a~~-~~~f~~f~r~~~p~l~~~~mt~Y~~~~~~~~~fl~~~~~~~~tl~evLs~~Gl 347 (511)
|--+||+. ||+||++||+.-|. +|||. +.|+.|.--..|.. ...+.+.|++.|+++|.
T Consensus 149 ~Gk~ifIDTEgtFrpdRi~~IAe~~~~d~d~~------LdNI~y~Ra~~se~-----------qmelv~~L~~~~se~g~ 211 (335)
T KOG1434|consen 149 GGKAIFIDTEGTFRPDRIKDIAERFKVDPDFT------LDNILYFRAYNSEE-----------QMELVYLLGDFLSEHGK 211 (335)
T ss_pred CceEEEEecCCccchHHHHHHHHHhCCCHHHH------HHHHHHHHHcChHH-----------HHHHHHHHHHHHhhcCc
Confidence 44678875 99999999997774 44432 23443322122221 22345678999999987
Q ss_pred cEEee
Q 010407 348 RTFAC 352 (511)
Q Consensus 348 ~q~ri 352 (511)
-.+-|
T Consensus 212 ~rlvI 216 (335)
T KOG1434|consen 212 YRLVI 216 (335)
T ss_pred EEEEE
Confidence 66655
No 79
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=42.66 E-value=56 Score=29.40 Aligned_cols=137 Identities=18% Similarity=0.205 Sum_probs=70.3
Q ss_pred EEEEEeccCCCCCCCCCccccCCCccHHHHHhhCCCCceeeeccccccCCCCCCCCCcchhhhcccCCccccccchHHHH
Q 010407 19 AVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVD 98 (511)
Q Consensus 19 ~L~IlDGwG~~~~~~~NAi~~A~tp~~d~l~~~~p~~~~~L~asG~~VGLP~~gqmGNSEVGH~~iGaGRiv~q~l~rI~ 98 (511)
|.+++|-=|--.... ..++.|=.-.+..|-.+. .+..+.-.....-+. .+.+=.++ +.+...-
T Consensus 3 vvilvD~S~Sm~g~~-~~~k~al~~~l~~L~~~d--~fnii~f~~~~~~~~-~~~~~~~~-------------~~~~~a~ 65 (155)
T PF13768_consen 3 VVILVDTSGSMSGEK-ELVKDALRAILRSLPPGD--RFNIIAFGSSVRPLF-PGLVPATE-------------ENRQEAL 65 (155)
T ss_pred EEEEEeCCCCCCCcH-HHHHHHHHHHHHhCCCCC--EEEEEEeCCEeeEcc-hhHHHHhH-------------HHHHHHH
Confidence 455677776554444 555555444455543332 234444444444454 33221221 1222333
Q ss_pred HHHhc-----CCCcCchhHhhhhhhc-CCCceEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEEeecCCCCCCCc
Q 010407 99 LALAS-----GKIYQDEGFNYIKPSF-ETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGS 172 (511)
Q Consensus 99 ~ai~~-----g~~~~n~~~~~~~~~~-~~~~lHl~GLlSdGGVHsh~~Hl~al~~~a~~~g~~~v~vH~~~DGRDt~p~s 172 (511)
+.|++ |.=.=.++|+.+++.. ..+....+=|+|||..-+-.+.+...++ +.. .++.||+|.=|.++.+
T Consensus 66 ~~I~~~~~~~G~t~l~~aL~~a~~~~~~~~~~~~IilltDG~~~~~~~~i~~~v~---~~~-~~~~i~~~~~g~~~~~-- 139 (155)
T PF13768_consen 66 QWIKSLEANSGGTDLLAALRAALALLQRPGCVRAIILLTDGQPVSGEEEILDLVR---RAR-GHIRIFTFGIGSDADA-- 139 (155)
T ss_pred HHHHHhcccCCCccHHHHHHHHHHhcccCCCccEEEEEEeccCCCCHHHHHHHHH---hcC-CCceEEEEEECChhHH--
Confidence 33332 2222223344444433 2357888889999995444455555554 332 5688999988886664
Q ss_pred hHHHHHHH
Q 010407 173 SVGFVETI 180 (511)
Q Consensus 173 ~~~yl~~l 180 (511)
.++++|
T Consensus 140 --~~L~~L 145 (155)
T PF13768_consen 140 --DFLREL 145 (155)
T ss_pred --HHHHHH
Confidence 455555
No 80
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=42.45 E-value=92 Score=31.54 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=24.7
Q ss_pred EEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEEeecC
Q 010407 126 LIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDG 165 (511)
Q Consensus 126 l~GLlSdGGVHsh~~Hl~al~~~a~~~g~~~v~vH~~~DG 165 (511)
.+=|+|||.-++...-+..+++.|++.++ .||+|.=|
T Consensus 167 ~iIllTDG~~~~~~~~~~~~~~~~~~~~v---~vy~I~~~ 203 (296)
T TIGR03436 167 ALIVISDGGDNRSRDTLERAIDAAQRADV---AIYSIDAR 203 (296)
T ss_pred EEEEEecCCCcchHHHHHHHHHHHHHcCC---EEEEeccC
Confidence 46677888776666667777777777654 46666544
No 81
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=41.99 E-value=54 Score=32.87 Aligned_cols=120 Identities=21% Similarity=0.239 Sum_probs=76.3
Q ss_pred hhcccCCccccccchHHHHHHHhcC-CCcCchhHhh-hhhhc-CCCceEEEEeecCCCccccHHhHHHHHHHHHHcCCCe
Q 010407 80 GHNALGAGRIFAQGAKLVDLALASG-KIYQDEGFNY-IKPSF-ETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKR 156 (511)
Q Consensus 80 GH~~iGaGRiv~q~l~rI~~ai~~g-~~~~n~~~~~-~~~~~-~~~~lHl~GLlSdGGVHsh~~Hl~al~~~a~~~g~~~ 156 (511)
.++.+|||-|+- ......+++.| +|.=.|.+.. +++.+ +.+.+.+-|.+|..-+ ..|.+.|++
T Consensus 69 p~~~vGaGTVl~--~e~a~~a~~aGA~FiVsP~~~~~v~~~~~~~~i~~iPG~~TpsEi-----------~~A~~~Ga~- 134 (222)
T PRK07114 69 PGMILGVGSIVD--AATAALYIQLGANFIVTPLFNPDIAKVCNRRKVPYSPGCGSLSEI-----------GYAEELGCE- 134 (222)
T ss_pred CCeEEeeEeCcC--HHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEeCCCCCHHHH-----------HHHHHCCCC-
Confidence 358999999975 66778899988 5666777764 66666 5678999999987643 367788986
Q ss_pred EEEEEeecCCCCCCCchHHHHHHHH------------------HHHHHHhcCCCCceEEEEeeccccc---ccCCCCChH
Q 010407 157 IRLHILTDGRDVLDGSSVGFVETIE------------------KDLAELRGKGVDAQIASGGGRMYVT---MDRYENDWD 215 (511)
Q Consensus 157 v~vH~~~DGRDt~p~s~~~yl~~l~------------------~~~~~~~~~~~~~~iasv~GRyyva---MDR~d~rw~ 215 (511)
.|=+|==+ .-+..||+.|. +-+.++.+.| -+|-+.|..-+- ++ .++|+
T Consensus 135 -~vKlFPA~-----~~G~~~ikal~~p~p~i~~~ptGGV~~~~~n~~~yl~aG---a~avg~Gs~L~~~~~~~--~~~~~ 203 (222)
T PRK07114 135 -IVKLFPGS-----VYGPGFVKAIKGPMPWTKIMPTGGVEPTEENLKKWFGAG---VTCVGMGSKLIPKEALA--AKDYA 203 (222)
T ss_pred -EEEECccc-----ccCHHHHHHHhccCCCCeEEeCCCCCcchhcHHHHHhCC---CEEEEEChhhcCccccc--cccHH
Confidence 25556311 23577886665 2333332223 356566766411 22 46888
Q ss_pred HHHHHHHHH
Q 010407 216 VVKRGWDAQ 224 (511)
Q Consensus 216 rv~~ay~a~ 224 (511)
.+++..+..
T Consensus 204 ~i~~~a~~~ 212 (222)
T PRK07114 204 GIEQKVREA 212 (222)
T ss_pred HHHHHHHHH
Confidence 777654433
No 82
>PF02995 DUF229: Protein of unknown function (DUF229); InterPro: IPR004245 Members of this family are uncharacterised with a long conserved region that may contain several domains.
Probab=41.95 E-value=31 Score=38.41 Aligned_cols=31 Identities=16% Similarity=0.360 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHhcC----CEEEEeCCCCC
Q 010407 440 ACKAADEAVKIIIDAIEKVG----GIYLVTADHGN 470 (511)
Q Consensus 440 AIE~vD~~Lg~ll~al~~~g----~~lIITADHGN 470 (511)
.+..+|.-+.+.++.+.+.| ..|||.||||.
T Consensus 310 ~~~~~D~~~~~~l~~~~~~g~l~nT~vi~~SDHG~ 344 (497)
T PF02995_consen 310 GPSSLDDDLLDFLEKLQEEGVLDNTFVIFMSDHGL 344 (497)
T ss_pred hhHHHHHHHHHHHHHhhhcCcccccEEEEEcCCCc
Confidence 47888998888888888765 48999999999
No 83
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=39.19 E-value=1.6e+02 Score=25.97 Aligned_cols=74 Identities=24% Similarity=0.335 Sum_probs=41.5
Q ss_pred ceEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEEeecCCCCCCCchHHHHHHHHHHHHHHhcCCCCceEEEEeec
Q 010407 123 TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGR 202 (511)
Q Consensus 123 ~lHl~GLlSdGGVHsh~~Hl~al~~~a~~~g~~~v~vH~~~DGRDt~p~s~~~yl~~l~~~~~~~~~~~~~~~iasv~GR 202 (511)
.--.|=|+|||.-. .-....++.+++.| |.||++.=|.+..+ ...+++| .+. ..|+
T Consensus 99 ~~~~iv~iTDG~~~---~~~~~~~~~~~~~~---i~i~~v~~~~~~~~---~~~l~~l----a~~-----------tgG~ 154 (172)
T PF13519_consen 99 RRRAIVLITDGEDN---SSDIEAAKALKQQG---ITIYTVGIGSDSDA---NEFLQRL----AEA-----------TGGR 154 (172)
T ss_dssp EEEEEEEEES-TTH---CHHHHHHHHHHCTT---EEEEEEEES-TT-E---HHHHHHH----HHH-----------TEEE
T ss_pred CceEEEEecCCCCC---cchhHHHHHHHHcC---CeEEEEEECCCccH---HHHHHHH----HHh-----------cCCE
Confidence 45566789999766 22224677777665 56899988887776 2233333 222 1588
Q ss_pred ccccccCCCCChHHHHHHHHHH
Q 010407 203 MYVTMDRYENDWDVVKRGWDAQ 224 (511)
Q Consensus 203 yyvaMDR~d~rw~rv~~ay~a~ 224 (511)
|| .-+ +.=+.+..+++.|
T Consensus 155 ~~-~~~---~~~~~l~~~~~~I 172 (172)
T PF13519_consen 155 YF-HVD---NDPEDLDDAFQQI 172 (172)
T ss_dssp EE-EE----SSSHHHHHHHHH-
T ss_pred EE-Eec---CCHHHHHHHHhcC
Confidence 98 332 1226777776654
No 84
>PF05827 ATP-synt_S1: Vacuolar ATP synthase subunit S1 (ATP6S1); InterPro: IPR024722 This family consists of metazoan vacuolar ATP synthase subunit S1 proteins [] and fungal proteins belonging to the BIG family. In Candida albicans BIG is required for normal beta-1,6-glucan synthesis, hyphal morphogenesis, adhesion and virulence [].
Probab=36.08 E-value=50 Score=33.59 Aligned_cols=50 Identities=18% Similarity=0.216 Sum_probs=41.0
Q ss_pred CCcEEEEecCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC-CEEEEeCCC
Q 010407 414 RFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVG-GIYLVTADH 468 (511)
Q Consensus 414 ~yDfV~vnfanpDmvGHtgd~ea~~kAIE~vD~~Lg~ll~al~~~g-~~lIITADH 468 (511)
+..++.++|...-.-+ +...++++.-|..|++++..+...+ +++|.||+-
T Consensus 127 ~~~vi~V~l~~l~~~~-----~~R~~~L~~nD~~l~~vl~~l~s~~~ytvIyts~~ 177 (282)
T PF05827_consen 127 KPRVIRVDLPPLPSSS-----ESRKEALSDNDEFLRKVLSKLPSPDPYTVIYTSTP 177 (282)
T ss_pred CCcEEEEECCCCCCcc-----ccchhhhhhhhHHHHHHHHhcCCCCcEEEEEEccC
Confidence 3458888887664433 6677889999999999999998877 899999976
No 85
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=35.22 E-value=1.8e+02 Score=28.53 Aligned_cols=65 Identities=18% Similarity=0.140 Sum_probs=39.4
Q ss_pred ceEEEEeecCCCcccc-------HHhHHHHHHHHHHcCCCeEEEEEeecCCCCC---CCc----hHHHHHHHHHHHHHH
Q 010407 123 TLHLIGLLSDGGVHSR-------LDQLQLLLKGASERGAKRIRLHILTDGRDVL---DGS----SVGFVETIEKDLAEL 187 (511)
Q Consensus 123 ~lHl~GLlSdGGVHsh-------~~Hl~al~~~a~~~g~~~v~vH~~~DGRDt~---p~s----~~~yl~~l~~~~~~~ 187 (511)
.+-..+-+|+.-.+.. +++++..+++|++.|++.|.+|.-....... |.. ..+++++|.+..++.
T Consensus 60 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg~~~vv~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~ 138 (274)
T COG1082 60 EITSLAPFSNNLLSPDEEEREEALEELKRAIELAKELGAKVVVVHPGLGAGADDPDSPEEARERWAEALEELAEIAEEL 138 (274)
T ss_pred EEEeecccCCCcCCCchhhHHHHHHHHHHHHHHHHHcCCCeEEeecccCCcCCCCCCCcccHHHHHHHHHHHHHHHHHh
Confidence 5555555665433433 7788888888999888777777754443332 322 455666665555544
No 86
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=34.58 E-value=88 Score=26.79 Aligned_cols=42 Identities=19% Similarity=0.205 Sum_probs=33.5
Q ss_pred CceEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEEeecCC
Q 010407 122 GTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGR 166 (511)
Q Consensus 122 ~~lHl~GLlSdGGVHsh~~Hl~al~~~a~~~g~~~v~vH~~~DGR 166 (511)
...+++=++|||..++..+-+...++.+++.+++ ||++.=|-
T Consensus 100 ~~~~~lvvitDg~~~~~~~~~~~~~~~~~~~~v~---v~~v~~g~ 141 (161)
T cd00198 100 NARRVIILLTDGEPNDGPELLAEAARELRKLGIT---VYTIGIGD 141 (161)
T ss_pred CCceEEEEEeCCCCCCCcchhHHHHHHHHHcCCE---EEEEEcCC
Confidence 4789999999999988887888899999998764 55554443
No 87
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=34.47 E-value=63 Score=32.29 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=20.5
Q ss_pred cHHhHHHHHHHHHHcCCCeEEEEEee
Q 010407 138 RLDQLQLLLKGASERGAKRIRLHILT 163 (511)
Q Consensus 138 h~~Hl~al~~~a~~~g~~~v~vH~~~ 163 (511)
+++++...+++|++.|++.|.+|.-.
T Consensus 83 ~~~~~~~~i~~A~~lG~~~v~~~~g~ 108 (279)
T cd00019 83 SIERLKDEIERCEELGIRLLVFHPGS 108 (279)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 46788888999999998877777643
No 88
>PRK13753 dihydropteroate synthase; Provisional
Probab=34.34 E-value=2e+02 Score=29.89 Aligned_cols=65 Identities=14% Similarity=0.055 Sum_probs=44.4
Q ss_pred eEEEEee-------cCCCccccHHhHHHHHHHHHHcCCCeEEEEEeecCCCCCCCchHHHHHHHHHHHHHHh
Q 010407 124 LHLIGLL-------SDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELR 188 (511)
Q Consensus 124 lHl~GLl-------SdGGVHsh~~Hl~al~~~a~~~g~~~v~vH~~~DGRDt~p~s~~~yl~~l~~~~~~~~ 188 (511)
.|+||.| ||||.+...+...+=++...+.|..=|=|=.=+..-...|-|..+=++.+...++.+.
T Consensus 2 ~~iMGIlNvTPDSFsDGg~~~~~d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~ 73 (279)
T PRK13753 2 VTVFGILNLTEDSFFDESRRLDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALS 73 (279)
T ss_pred ceEEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHH
Confidence 5899987 9999998888888888888899986333322222222344555666776667777764
No 89
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=33.67 E-value=1.6e+02 Score=29.39 Aligned_cols=98 Identities=14% Similarity=0.083 Sum_probs=58.3
Q ss_pred ccccccCCCCCCCCCcchhhhcccCCccccccchHHHHHHHhcCCCcCchhHhhhhhhcCCCceEEEEeecCCCccccHH
Q 010407 61 AHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLD 140 (511)
Q Consensus 61 asG~~VGLP~~gqmGNSEVGH~~iGaGRiv~q~l~rI~~ai~~g~~~~n~~~~~~~~~~~~~~lHl~GLlSdGGVHsh~~ 140 (511)
|...-+|+| .... .+=|-++.+.. .+++++|. -+.+.++.+.. +-.+|||+-+|+ .++..+
T Consensus 31 ad~iElgip-~sdp---------~adG~~i~~~~---~~a~~~g~---~~~v~~vr~~~-~~Pl~lM~y~n~--~~~~~~ 91 (244)
T PRK13125 31 VDILELGIP-PKYP---------KYDGPVIRKSH---RKVKGLDI---WPLLEEVRKDV-SVPIILMTYLED--YVDSLD 91 (244)
T ss_pred CCEEEECCC-CCCC---------CCCCHHHHHHH---HHHHHcCc---HHHHHHHhccC-CCCEEEEEecch--hhhCHH
Confidence 667778998 4442 12244455553 56677777 12222233222 236899999999 355444
Q ss_pred hHHHHHHHHHHcCCCeEEEEEeecCCCCCCCchHHHHHHHHHHHHHH
Q 010407 141 QLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAEL 187 (511)
Q Consensus 141 Hl~al~~~a~~~g~~~v~vH~~~DGRDt~p~s~~~yl~~l~~~~~~~ 187 (511)
..++.+++.|+.-|.||. .++. +.+.++++-+.++++
T Consensus 92 ---~~i~~~~~~Gadgvii~d------lp~e-~~~~~~~~~~~~~~~ 128 (244)
T PRK13125 92 ---NFLNMARDVGADGVLFPD------LLID-YPDDLEKYVEIIKNK 128 (244)
T ss_pred ---HHHHHHHHcCCCEEEECC------CCCC-cHHHHHHHHHHHHHc
Confidence 457788899999898983 3332 234566666666665
No 90
>COG1015 DeoB Phosphopentomutase [Carbohydrate transport and metabolism]
Probab=33.50 E-value=40 Score=36.52 Aligned_cols=39 Identities=18% Similarity=0.232 Sum_probs=33.3
Q ss_pred CcEEEEEEeccCCCCCCCCCccccCCCccHHHHHhhCCC
Q 010407 16 NIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPG 54 (511)
Q Consensus 16 ~~v~L~IlDGwG~~~~~~~NAi~~A~tp~~d~l~~~~p~ 54 (511)
+.|.|++||.+|++...+...+..+..-++-++++.+++
T Consensus 2 ~Rv~liVlDSfGIGa~pDa~~fgd~ganTlgHi~e~~~~ 40 (397)
T COG1015 2 KRVFLIVLDSFGIGAAPDAEKFGDVGANTLGHIAEACAG 40 (397)
T ss_pred ceEEEEEecCcccCCCccHHHhCCCCchhHHHHHHHcCc
Confidence 459999999999998888888877888888888888874
No 91
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=33.03 E-value=1e+02 Score=29.78 Aligned_cols=44 Identities=5% Similarity=-0.019 Sum_probs=33.2
Q ss_pred ceEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEEeecCCCCC
Q 010407 123 TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVL 169 (511)
Q Consensus 123 ~lHl~GLlSdGGVHsh~~Hl~al~~~a~~~g~~~v~vH~~~DGRDt~ 169 (511)
....+=|++||+-.++-+......+.++++|| -||++.-|.+..
T Consensus 131 v~kvvIllTDg~~~~~~~~~~~~a~~l~~~GI---~i~tVGiG~~~d 174 (193)
T cd01477 131 YKKVVIVFASDYNDEGSNDPRPIAARLKSTGI---AIITVAFTQDES 174 (193)
T ss_pred CCeEEEEEecCccCCCCCCHHHHHHHHHHCCC---EEEEEEeCCCCC
Confidence 46778899998776664556677888899997 488888887644
No 92
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=32.66 E-value=95 Score=30.97 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=21.5
Q ss_pred cHHhHHHHHHHHHHcCCCeEEEEEee
Q 010407 138 RLDQLQLLLKGASERGAKRIRLHILT 163 (511)
Q Consensus 138 h~~Hl~al~~~a~~~g~~~v~vH~~~ 163 (511)
.++.+...++.|++.|++.|.++...
T Consensus 97 ~~~~~~~~i~~a~~lG~~~i~~~~~~ 122 (283)
T PRK13209 97 ALEIMRKAIQLAQDLGIRVIQLAGYD 122 (283)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcc
Confidence 46788999999999999988777543
No 93
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=32.58 E-value=1.1e+02 Score=30.35 Aligned_cols=120 Identities=18% Similarity=0.331 Sum_probs=73.1
Q ss_pred hhcccCCccccccchHHHHHHHhcC-CCcCchhHhh-hhhhc-CCCceEEEEeecCCCccccHHhHHHHHHHHHHcCCCe
Q 010407 80 GHNALGAGRIFAQGAKLVDLALASG-KIYQDEGFNY-IKPSF-ETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKR 156 (511)
Q Consensus 80 GH~~iGaGRiv~q~l~rI~~ai~~g-~~~~n~~~~~-~~~~~-~~~~lHl~GLlSdGGVHsh~~Hl~al~~~a~~~g~~~ 156 (511)
+++.+|||-|.- .....++++.| +|.=.|.+.. +++.+ +.+-..+-|.++..-+ ..|.+.|.+
T Consensus 58 ~~~~vGAGTVl~--~~~a~~a~~aGA~FivsP~~~~~v~~~~~~~~i~~iPG~~TptEi-----------~~A~~~Ga~- 123 (204)
T TIGR01182 58 PDALIGAGTVLN--PEQLRQAVDAGAQFIVSPGLTPELAKHAQDHGIPIIPGVATPSEI-----------MLALELGIT- 123 (204)
T ss_pred CCCEEEEEeCCC--HHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCcEECCCCCHHHH-----------HHHHHCCCC-
Confidence 358999999975 56788899988 5556666654 55656 5578888888887643 367788885
Q ss_pred EEEEEeecCCCCCCCchHHHHHHHHH----------------HHHHHhcCCCCceEEEEeeccccc--ccCCCCChHHHH
Q 010407 157 IRLHILTDGRDVLDGSSVGFVETIEK----------------DLAELRGKGVDAQIASGGGRMYVT--MDRYENDWDVVK 218 (511)
Q Consensus 157 v~vH~~~DGRDt~p~s~~~yl~~l~~----------------~~~~~~~~~~~~~iasv~GRyyva--MDR~d~rw~rv~ 218 (511)
.|=+|= -....|..|++.|.. -+++.-+.| -++-+.|..-+- .=. .++|+.++
T Consensus 124 -~vKlFP----A~~~GG~~yikal~~plp~i~~~ptGGV~~~N~~~~l~aG---a~~vg~Gs~L~~~~~~~-~~~~~~i~ 194 (204)
T TIGR01182 124 -ALKLFP----AEVSGGVKMLKALAGPFPQVRFCPTGGINLANVRDYLAAP---NVACGGGSWLVPKDLIA-AGDWDEIT 194 (204)
T ss_pred -EEEECC----chhcCCHHHHHHHhccCCCCcEEecCCCCHHHHHHHHhCC---CEEEEEChhhcCchhhc-cccHHHHH
Confidence 245552 111124778876652 222222223 466667766411 112 46887776
Q ss_pred HHHH
Q 010407 219 RGWD 222 (511)
Q Consensus 219 ~ay~ 222 (511)
+.-+
T Consensus 195 ~~a~ 198 (204)
T TIGR01182 195 RLAR 198 (204)
T ss_pred HHHH
Confidence 6444
No 94
>TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase. A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog.
Probab=31.91 E-value=1.1e+02 Score=32.34 Aligned_cols=109 Identities=17% Similarity=0.114 Sum_probs=60.4
Q ss_pred chHHHHHHHcccCCCCCCccCCCCCeeEEeeecccCCCCCccccccCCccccccHHHHHHhCCCcEEeeecCCccccEEE
Q 010407 284 DRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTF 363 (511)
Q Consensus 284 DR~rqi~~a~~~~~f~~f~r~~~p~l~~~~mt~Y~~~~~~~~~fl~~~~~~~~tl~evLs~~Gl~q~riAEteKyahvt~ 363 (511)
||++++.+.|..|.- .++-+.++| |+ .+-+....+..+|.++|++.-.+.
T Consensus 2 ~r~~~~l~~lg~p~~------~~~vI~VtG-TN-------------GKgSt~~~l~~iL~~~g~~vg~~t---------- 51 (397)
T TIGR01499 2 ERMKKLLEALGNPQD------LYPVIHVAG-TN-------------GKGSTCAFLESILRAAGYKVGLFT---------- 51 (397)
T ss_pred hHHHHHHHHcCCcHh------hCCEEEEeC-CC-------------ChHHHHHHHHHHHHHcCCCeeEEe----------
Confidence 799999999998741 223234444 32 223333458999999999886662
Q ss_pred eeCCcccccccCCCceEEeecCCccccccC--------------CcCCCHHHHHHH-HHHHHHcCCCcEEEEecCCcccC
Q 010407 364 FWNGNRSGYFDSNLEEYVEIPSDSGITFNV--------------QPKMKALEIAER-AKKAILSRRFHQVRVNLPNSDMV 428 (511)
Q Consensus 364 FfnGG~~~~~~~~ge~r~li~sp~V~tyDl--------------~pemsa~ev~d~-~i~al~~~~yDfV~vnfanpDmv 428 (511)
.+.+- ...||+.+....+..-++ ....++.|+... ++..+.+.+.|+++++.. +
T Consensus 52 ------Sphl~-~~~eri~i~g~~i~~~~~~~~~~~v~~~~~~~~~~~~~fe~~t~~A~~~f~~~~~d~~VlEvG---l- 120 (397)
T TIGR01499 52 ------SPHLV-SFNERIRINGEPISDEELAQAFEQVRPILEKLSQQPTYFELLTLLAFLYFAQAQVDVAVLEVG---L- 120 (397)
T ss_pred ------CCCcC-ccceEEEECCEECCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHCCCCEEEEeec---C-
Confidence 12211 233455444322211110 012345555444 255666778999999875 2
Q ss_pred CCCCC
Q 010407 429 GHTGD 433 (511)
Q Consensus 429 GHtgd 433 (511)
|++.|
T Consensus 121 ggrld 125 (397)
T TIGR01499 121 GGRLD 125 (397)
T ss_pred CCCcc
Confidence 66654
No 95
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=31.57 E-value=1.3e+02 Score=27.73 Aligned_cols=51 Identities=16% Similarity=0.167 Sum_probs=28.1
Q ss_pred eEEEEeecCCCcccc------HHhHHHH---HHHHHHcCCCeEEEEEeecCCCCCCCchHHHHH
Q 010407 124 LHLIGLLSDGGVHSR------LDQLQLL---LKGASERGAKRIRLHILTDGRDVLDGSSVGFVE 178 (511)
Q Consensus 124 lHl~GLlSdGGVHsh------~~Hl~al---~~~a~~~g~~~v~vH~~~DGRDt~p~s~~~yl~ 178 (511)
--++=|+|||--+.- +..+... ++.|.+.|| .+|++.=|.|..+ .=..+++
T Consensus 104 ~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi---~v~~igig~~~~~-~~~~~~~ 163 (174)
T cd01454 104 RKILLVISDGEPNDLDYYEGNVFATEDALRAVIEARKLGI---EVFGITIDRDATT-VDKEYLK 163 (174)
T ss_pred CcEEEEEeCCCcCcccccCcchhHHHHHHHHHHHHHhCCc---EEEEEEecCcccc-chHHHHH
Confidence 345667777766532 2134444 444555554 4677777777766 3333443
No 96
>cd02685 MIT_C MIT_C; domain found C-terminal to MIT (contained within Microtubule Interacting and Trafficking molecules) domains, as well as in some bacterial proteins. The function of this domain is unknown.
Probab=31.43 E-value=1e+02 Score=29.27 Aligned_cols=51 Identities=12% Similarity=0.144 Sum_probs=40.6
Q ss_pred ccHHhHHHHHHHHHHcCCCeEEEEEeecCCCCCCCchHHHHHHHHHHHHHH
Q 010407 137 SRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAEL 187 (511)
Q Consensus 137 sh~~Hl~al~~~a~~~g~~~v~vH~~~DGRDt~p~s~~~yl~~l~~~~~~~ 187 (511)
-++..|..++|++.+.-.+.++||++|=--+..|..-...+++|.+.|.+.
T Consensus 33 hQi~Nl~~F~El~vk~~~~~~~i~LvT~~d~~~~~~Q~~~l~~i~~sl~~~ 83 (148)
T cd02685 33 HQIRNFLRFCELVVKPPCELKYIHLVTGEDEDNGKQQIEALEEIKQSLASH 83 (148)
T ss_pred HHHHHHHHHHHHHhcCccceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhC
Confidence 378889999999998666689999999433345667778899999888876
No 97
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=31.23 E-value=1.8e+02 Score=26.16 Aligned_cols=15 Identities=27% Similarity=0.275 Sum_probs=10.9
Q ss_pred EEEEEeecCCCCCCC
Q 010407 157 IRLHILTDGRDVLDG 171 (511)
Q Consensus 157 v~vH~~~DGRDt~p~ 171 (511)
-.|-+||||.++...
T Consensus 98 ~~ivl~TDG~~~~~~ 112 (170)
T cd01465 98 NRILLATDGDFNVGE 112 (170)
T ss_pred eEEEEEeCCCCCCCC
Confidence 346799999986543
No 98
>PRK12383 putative mutase; Provisional
Probab=31.00 E-value=46 Score=36.41 Aligned_cols=39 Identities=18% Similarity=0.194 Sum_probs=30.7
Q ss_pred CcEEEEEEeccCCCCCCCCCcc--ccCCCccHHHHHhhCCC
Q 010407 16 NIVAVVVLDGWGEFKPDKYNCI--HVADTPTMDSFKKSAPG 54 (511)
Q Consensus 16 ~~v~L~IlDGwG~~~~~~~NAi--~~A~tp~~d~l~~~~p~ 54 (511)
++++||||||+|.+...+.+.+ .....-++-++.+.+|.
T Consensus 2 ~R~~~iVlDs~GiG~~~Da~~~~~~D~ganTl~hi~~~~~~ 42 (406)
T PRK12383 2 ARFVVLVIDSFGVGAMKDVTLVRPQDAGANTCGHILSQLPH 42 (406)
T ss_pred CeEEEEEecCCCCCCCCCHHHhCCCCCCcchHHHHHHhcCC
Confidence 4599999999999988888888 66666677777775543
No 99
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=29.97 E-value=2.2e+02 Score=29.66 Aligned_cols=89 Identities=18% Similarity=0.235 Sum_probs=56.1
Q ss_pred ceEEEEee-------cCCCccccHHhHHHHHHHHHHcCCCeEEEEEeecCCCCCCCchHHHHHHHHHHHHHHhcCCCCce
Q 010407 123 TLHLIGLL-------SDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQ 195 (511)
Q Consensus 123 ~lHl~GLl-------SdGGVHsh~~Hl~al~~~a~~~g~~~v~vH~~~DGRDt~p~s~~~yl~~l~~~~~~~~~~~~~~~ 195 (511)
+-++||.| ||||.|...+...+-++...++|..=|=|=+=+..-...|-|..+-++.+...++.+++. .+
T Consensus 14 ~~~imGIlNvTpDSFsdgg~~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~-~~-- 90 (282)
T PRK11613 14 HPHVMGILNVTPDSFSDGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQR-FE-- 90 (282)
T ss_pred CceEEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhc-CC--
Confidence 45799997 999999999999988888889998633222111113344556667777777666666321 11
Q ss_pred EEEEeecccccccCCCCChHHHHHHHHH
Q 010407 196 IASGGGRMYVTMDRYENDWDVVKRGWDA 223 (511)
Q Consensus 196 iasv~GRyyvaMDR~d~rw~rv~~ay~a 223 (511)
- -++.|= .+++-.++|.++
T Consensus 91 ------~-~ISIDT--~~~~va~~AL~~ 109 (282)
T PRK11613 91 ------V-WISVDT--SKPEVIRESAKA 109 (282)
T ss_pred ------C-eEEEEC--CCHHHHHHHHHc
Confidence 1 136673 445666666653
No 100
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=29.88 E-value=2.2e+02 Score=26.19 Aligned_cols=40 Identities=20% Similarity=0.131 Sum_probs=22.0
Q ss_pred EEEEeecCCCCCCCch---HHHHHHHHHHHHHHhcCCCCceEEEE
Q 010407 158 RLHILTDGRDVLDGSS---VGFVETIEKDLAELRGKGVDAQIASG 199 (511)
Q Consensus 158 ~vH~~~DGRDt~p~s~---~~yl~~l~~~~~~~~~~~~~~~iasv 199 (511)
.|-+||||.++..... ...+++..+..++..+.|+ ++-+|
T Consensus 106 ~iiliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi--~v~~i 148 (174)
T cd01454 106 ILLVISDGEPNDLDYYEGNVFATEDALRAVIEARKLGI--EVFGI 148 (174)
T ss_pred EEEEEeCCCcCcccccCcchhHHHHHHHHHHHHHhCCc--EEEEE
Confidence 4889999999865431 1134444222333333366 56544
No 101
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=29.70 E-value=2.8e+02 Score=27.70 Aligned_cols=68 Identities=22% Similarity=0.203 Sum_probs=43.3
Q ss_pred ceEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEEeecCCCCCCC-chHHHHHHHHHHHHHHhcCCCCceEEEEee
Q 010407 123 TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDG-SSVGFVETIEKDLAELRGKGVDAQIASGGG 201 (511)
Q Consensus 123 ~lHl~GLlSdGGVHsh~~Hl~al~~~a~~~g~~~v~vH~~~DGRDt~p~-s~~~yl~~l~~~~~~~~~~~~~~~iasv~G 201 (511)
++--++++|| +|+....+.++++.++++++. .+||+ |==|... ...+|.+-+ +.+.++ +. ++-.|-|
T Consensus 3 ~~~kIl~iSD--iHgn~~~le~l~~~~~~~~~D-~vv~~---GDl~~~g~~~~~~~~~l-~~l~~l---~~--pv~~V~G 70 (224)
T cd07388 3 TVRYVLATSN--PKGDLEALEKLVGLAPETGAD-AIVLI---GNLLPKAAKSEDYAAFF-RILGEA---HL--PTFYVPG 70 (224)
T ss_pred ceeEEEEEEe--cCCCHHHHHHHHHHHhhcCCC-EEEEC---CCCCCCCCCHHHHHHHH-HHHHhc---CC--ceEEEcC
Confidence 4556899999 999999999999999989985 44665 4333333 233333322 223333 33 5666666
Q ss_pred c
Q 010407 202 R 202 (511)
Q Consensus 202 R 202 (511)
-
T Consensus 71 N 71 (224)
T cd07388 71 P 71 (224)
T ss_pred C
Confidence 4
No 102
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=29.63 E-value=2e+02 Score=29.08 Aligned_cols=31 Identities=26% Similarity=0.275 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHcC--CCcEEEEecCCcccCCCCCC
Q 010407 400 LEIAERAKKAILSR--RFHQVRVNLPNSDMVGHTGD 433 (511)
Q Consensus 400 ~ev~d~~i~al~~~--~yDfV~vnfanpDmvGHtgd 433 (511)
..+.+.+++++++. +.|||++- .|++.|...
T Consensus 52 ~~l~~s~l~~i~~~~~~~dfii~t---GD~v~h~~~ 84 (296)
T cd00842 52 WRLVESALEAIKKNHPKPDFILWT---GDLVRHDVD 84 (296)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEc---CCCCCCCch
Confidence 46888889888776 89999887 999999864
No 103
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=29.44 E-value=1.9e+02 Score=30.50 Aligned_cols=52 Identities=25% Similarity=0.305 Sum_probs=39.4
Q ss_pred cHHhHHHHHHHHHHcCCCeEEEEEeecCCCCCCCchHHHHHHHHHHHHHHhcCCC
Q 010407 138 RLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGV 192 (511)
Q Consensus 138 h~~Hl~al~~~a~~~g~~~v~vH~~~DGRDt~p~s~~~yl~~l~~~~~~~~~~~~ 192 (511)
-+++|+.|++.|++.||. |+=+|.=|-|.. .|..+-++.|.+++.++...|+
T Consensus 54 el~~l~~L~~~a~~~~V~--Fv~aisPg~~~~-~s~~~d~~~L~~K~~ql~~lGv 105 (306)
T PF07555_consen 54 ELAELKELADAAKANGVD--FVYAISPGLDIC-YSSEEDFEALKAKFDQLYDLGV 105 (306)
T ss_dssp HHHHHHHHHHHHHHTT-E--EEEEEBGTTT---TSHHHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHHHcCCE--EEEEECcccccc-cCcHHHHHHHHHHHHHHHhcCC
Confidence 468899999999999995 566677676654 7788888999999888876666
No 104
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=29.41 E-value=1.7e+02 Score=30.13 Aligned_cols=69 Identities=35% Similarity=0.345 Sum_probs=46.5
Q ss_pred cCCCHHHHHHHHHHHHHcCCCcEEEEecCCcccCCCCCCHHHHHHHHHHH--------HHHHHHHHHHHHhcC-CEEEEe
Q 010407 395 PKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAA--------DEAVKIIIDAIEKVG-GIYLVT 465 (511)
Q Consensus 395 pemsa~ev~d~~i~al~~~~yDfV~vnfanpDmvGHtgd~ea~~kAIE~v--------D~~Lg~ll~al~~~g-~~lIIT 465 (511)
+.|+.+++.+.+...+++-++||+++--.|+-.-| +.++.+.+... |.--.+.-+++++.| +.+||.
T Consensus 41 aKm~pe~~~~~~~~~~~~~~pDf~i~isPN~a~PG----P~~ARE~l~~~~iP~IvI~D~p~~K~~d~l~~~g~GYIivk 116 (277)
T PRK00994 41 AKMGPEEVEEVVKKMLEEWKPDFVIVISPNPAAPG----PKKAREILKAAGIPCIVIGDAPGKKVKDAMEEQGLGYIIVK 116 (277)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEECCCCCCCC----chHHHHHHHhcCCCEEEEcCCCccchHHHHHhcCCcEEEEe
Confidence 46787777666666666678999999988885555 44556666655 322233447788777 577887
Q ss_pred CC
Q 010407 466 AD 467 (511)
Q Consensus 466 AD 467 (511)
+|
T Consensus 117 ~D 118 (277)
T PRK00994 117 AD 118 (277)
T ss_pred cC
Confidence 76
No 105
>PRK13759 arylsulfatase; Provisional
Probab=28.98 E-value=36 Score=37.46 Aligned_cols=49 Identities=12% Similarity=0.121 Sum_probs=30.5
Q ss_pred EEEEEEeccCCCCC-CCCCccccCCCccHHHHHhhCCCCceeeeccccccCCCC
Q 010407 18 VAVVVLDGWGEFKP-DKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPT 70 (511)
Q Consensus 18 v~L~IlDGwG~~~~-~~~NAi~~A~tp~~d~l~~~~p~~~~~L~asG~~VGLP~ 70 (511)
+|||+.|-+|...- ..|| ..+.|||||+|.++- -.++...+.+ .+.-||
T Consensus 9 Il~I~~Ddlr~d~l~~~G~--~~~~TPnld~La~~G-~~F~nay~~~-p~c~ps 58 (485)
T PRK13759 9 IILIMVDQMRGDCLGCNGN--KAVETPNLDMLASEG-YNFENAYSAV-PSCTPA 58 (485)
T ss_pred EEEEEECCCCHHHHHhcCC--CcCCCccHHHHHhcC-ceeeceecCC-Ccchhh
Confidence 99999999986422 2343 246899999998762 1233334333 344455
No 106
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=28.57 E-value=3e+02 Score=25.13 Aligned_cols=59 Identities=12% Similarity=0.185 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHcCCCcEEEEecCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEeC
Q 010407 400 LEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTA 466 (511)
Q Consensus 400 ~ev~d~~i~al~~~~yDfV~vnfanpDmvGHtgd~ea~~kAIE~vD~~Lg~ll~al~~~g~~lIITA 466 (511)
.+..+++-+.+...++|.|++++..=|...+. +.+.+. +.+.++++.+++.+-.+|+.+
T Consensus 45 ~~~l~~l~~~~~~~~~d~v~i~~G~ND~~~~~-~~~~~~-------~~~~~li~~~~~~~~~~il~~ 103 (183)
T cd04501 45 SQMLVRFYEDVIALKPAVVIIMGGTNDIIVNT-SLEMIK-------DNIRSMVELAEANGIKVILAS 103 (183)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEeccCccccCC-CHHHHH-------HHHHHHHHHHHHCCCcEEEEe
Confidence 34555555555556799999999888875332 333332 334556666777665555543
No 107
>COG1456 CdhE CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=27.20 E-value=2.5e+02 Score=30.60 Aligned_cols=117 Identities=19% Similarity=0.229 Sum_probs=74.6
Q ss_pred HHhCCCcEEeeecCCccccEEEeeCCcccccccCCCceEEeecCCccccccCCcCCCHHHHHHHHHHHH--H------cC
Q 010407 342 LVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAI--L------SR 413 (511)
Q Consensus 342 Ls~~Gl~q~riAEteKyahvt~FfnGG~~~~~~~~ge~r~li~sp~V~tyDl~pemsa~ev~d~~i~al--~------~~ 413 (511)
|-.-.++++.|.++||...+ ||-+..| ..|--+.-|.| .-||..-+|+.+++.+++-+-. + .-
T Consensus 61 LlaP~vkevtiG~ge~~v~i-----GGdeVly--RheLtffNpt~--~fvdv~D~m~e~el~~r~~~I~~f~~ervGe~L 131 (467)
T COG1456 61 LLAPEVKEVTIGVGEKAVVI-----GGDEVLY--RHELTFFNPTP--MFVDVADDMDEEELVERANEIANFRKERVGEKL 131 (467)
T ss_pred hcCcceeEEEecCCcceeee-----cccceeE--eeeeeeeCCCc--eEEECcccCCHHHHHHHHHHHHHHHHhhhccee
Confidence 44568999999999998876 8888888 45544445555 3456666899888877665422 1 11
Q ss_pred CCcEEEEecCCcccCCCCCCHHHHHHHHHHHHH-------------HHHHHHHHHHhcCCEEEEeCCCCChhhhh
Q 010407 414 RFHQVRVNLPNSDMVGHTGDIEATVVACKAADE-------------AVKIIIDAIEKVGGIYLVTADHGNAEDMV 475 (511)
Q Consensus 414 ~yDfV~vnfanpDmvGHtgd~ea~~kAIE~vD~-------------~Lg~ll~al~~~g~~lIITADHGN~E~m~ 475 (511)
+.|+|.+- --+||++.+.+|+|.+-+ ++..-++.+++.. -++-.|--+|.++|.
T Consensus 132 ~LDgvair-------~~Sgdpekfa~ave~v~~~~~pv~l~s~dpevmkaaLev~~dqk-PllYaAte~n~~e~~ 198 (467)
T COG1456 132 KLDGVAIR-------NRSGDPEKFAEAVEKVAEAGLPVILCSFDPEVMKAALEVVKDQK-PLLYAATEDNWKEFA 198 (467)
T ss_pred eeeeEEEE-------ecCCCHHHHHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhhccC-ceeeecccccHHHHH
Confidence 23444433 457899999999998743 3333334443311 466666677766664
No 108
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=26.92 E-value=2.7e+02 Score=25.24 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHc-CCCeEEEEEeecCCCCC
Q 010407 141 QLQLLLKGASER-GAKRIRLHILTDGRDVL 169 (511)
Q Consensus 141 Hl~al~~~a~~~-g~~~v~vH~~~DGRDt~ 169 (511)
++..+++.+.+. |+ .||.+.+|.|+.
T Consensus 86 d~~~~~~~l~~~~gv---~l~~~~~~~d~~ 112 (140)
T cd03770 86 KVGLYMEILFPKKGV---RFIAINDGVDSA 112 (140)
T ss_pred HHHHHHHHHHhhcCc---EEEEecCCcCCC
Confidence 334455555444 54 455566666553
No 109
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=26.75 E-value=3.3e+02 Score=27.63 Aligned_cols=82 Identities=18% Similarity=0.153 Sum_probs=51.2
Q ss_pred ecCCCccccHHhHHHHHHHHHHcCCCeEEEEEeecCCCCCCCchHHHHHHHHHHHHHHhcCCCCceEEEEeecccccccC
Q 010407 130 LSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDR 209 (511)
Q Consensus 130 lSdGGVHsh~~Hl~al~~~a~~~g~~~v~vH~~~DGRDt~p~s~~~yl~~l~~~~~~~~~~~~~~~iasv~GRyyvaMDR 209 (511)
+||||++...+.....++...+.|..=+=|=+-+-.-+..+.|..+-++.|...++.+++. .+- .++.|
T Consensus 13 F~dg~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~---------~~~-plsiD- 81 (257)
T TIGR01496 13 FSDGGRFLSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQ---------PDV-PISVD- 81 (257)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhc---------CCC-eEEEe-
Confidence 3999999888999998988899998644331122223344456666666677666665321 122 23666
Q ss_pred CCCChHHHHHHHHH
Q 010407 210 YENDWDVVKRGWDA 223 (511)
Q Consensus 210 ~d~rw~rv~~ay~a 223 (511)
-.+++-++.|.++
T Consensus 82 -T~~~~vi~~al~~ 94 (257)
T TIGR01496 82 -TYRAEVARAALEA 94 (257)
T ss_pred -CCCHHHHHHHHHc
Confidence 4566777777664
No 110
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=26.55 E-value=1.6e+02 Score=25.38 Aligned_cols=77 Identities=18% Similarity=0.348 Sum_probs=53.1
Q ss_pred eEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEEee--------cCCC---CCCCchHHHHHHHHHHHHHHhcCCC
Q 010407 124 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILT--------DGRD---VLDGSSVGFVETIEKDLAELRGKGV 192 (511)
Q Consensus 124 lHl~GLlSdGGVHsh~~Hl~al~~~a~~~g~~~v~vH~~~--------DGRD---t~p~s~~~yl~~l~~~~~~~~~~~~ 192 (511)
.+++ |+--+|+=|.+ =...+-+.|+++|++ +-|.+.. +.-| +.|+-+. .++++++.+.+. |+
T Consensus 4 ~~IL-l~C~~G~sSS~-l~~k~~~~~~~~gi~-~~v~a~~~~~~~~~~~~~Dvill~pqi~~-~~~~i~~~~~~~---~i 76 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSL-LVNKMNKAAEEYGVP-VKIAAGSYGAAGEKLDDADVVLLAPQVAY-MLPDLKKETDKK---GI 76 (95)
T ss_pred cEEE-EECCCchhHHH-HHHHHHHHHHHCCCc-EEEEEecHHHHHhhcCCCCEEEECchHHH-HHHHHHHHhhhc---CC
Confidence 3555 45556677777 558889999999995 6666654 2223 2455444 677777766655 65
Q ss_pred CceEEEEeecccccccC
Q 010407 193 DAQIASGGGRMYVTMDR 209 (511)
Q Consensus 193 ~~~iasv~GRyyvaMDR 209 (511)
+++++..+.|-.||-
T Consensus 77 --pv~~I~~~~Y~~mdg 91 (95)
T TIGR00853 77 --PVEVINGAQYGKLTG 91 (95)
T ss_pred --CEEEeChhhcccCCc
Confidence 899999999977875
No 111
>PRK01060 endonuclease IV; Provisional
Probab=25.57 E-value=2.4e+02 Score=27.99 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=21.5
Q ss_pred cHHhHHHHHHHHHHcCCCeEEEEE
Q 010407 138 RLDQLQLLLKGASERGAKRIRLHI 161 (511)
Q Consensus 138 h~~Hl~al~~~a~~~g~~~v~vH~ 161 (511)
.++.+...+++|++.|++.|.+|.
T Consensus 87 s~~~~~~~i~~A~~lga~~vv~h~ 110 (281)
T PRK01060 87 SRDFLIQEIERCAALGAKLLVFHP 110 (281)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcC
Confidence 367899999999999999998985
No 112
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=25.27 E-value=2.9e+02 Score=22.54 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=18.5
Q ss_pred HHHHHHHHcCCCcEEEEecCCccc
Q 010407 404 ERAKKAILSRRFHQVRVNLPNSDM 427 (511)
Q Consensus 404 d~~i~al~~~~yDfV~vnfanpDm 427 (511)
+.+++.+++..+|++++++..+|+
T Consensus 33 ~~~~~~~~~~~~d~iiid~~~~~~ 56 (112)
T PF00072_consen 33 EEALELLKKHPPDLIIIDLELPDG 56 (112)
T ss_dssp HHHHHHHHHSTESEEEEESSSSSS
T ss_pred HHHHHHhcccCceEEEEEeeeccc
Confidence 445566677789999999888864
No 113
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=25.04 E-value=2.8e+02 Score=27.67 Aligned_cols=83 Identities=10% Similarity=0.064 Sum_probs=46.0
Q ss_pred HhHHHHHHHHHHcCCCeEEEEEeecCCCCCCC--chHHHHHHHHHHHHHHhcCCCCceEEEEeecccccccCCCCChHHH
Q 010407 140 DQLQLLLKGASERGAKRIRLHILTDGRDVLDG--SSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVV 217 (511)
Q Consensus 140 ~Hl~al~~~a~~~g~~~v~vH~~~DGRDt~p~--s~~~yl~~l~~~~~~~~~~~~~~~iasv~GRyyvaMDR~d~rw~rv 217 (511)
+-+..+.++++++|...+.+|+-.++.-..|. --...++.+...++-..+.|+. .|....|++- .-++ +..|+++
T Consensus 45 ~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~A~~lG~~-~v~~~~g~~~-~~~~-~~~~~~~ 121 (279)
T cd00019 45 ERAEKFKAIAEEGPSICLSVHAPYLINLASPDKEKREKSIERLKDEIERCEELGIR-LLVFHPGSYL-GQSK-EEGLKRV 121 (279)
T ss_pred HHHHHHHHHHHHcCCCcEEEEcCceeccCCCCHHHHHHHHHHHHHHHHHHHHcCCC-EEEECCCCCC-CCCH-HHHHHHH
Confidence 67788888888883336888876655444443 2334444444444433333764 4444466543 3233 5556665
Q ss_pred HHHHHHHH
Q 010407 218 KRGWDAQV 225 (511)
Q Consensus 218 ~~ay~a~~ 225 (511)
.+.++.++
T Consensus 122 ~~~l~~l~ 129 (279)
T cd00019 122 IEALNELI 129 (279)
T ss_pred HHHHHHHH
Confidence 55555554
No 114
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=24.89 E-value=3.5e+02 Score=26.60 Aligned_cols=83 Identities=16% Similarity=0.253 Sum_probs=53.0
Q ss_pred cccCCccccccchHHHHHHHhcC-CCcCchhHhh-hhhhc-CCCceEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEE
Q 010407 82 NALGAGRIFAQGAKLVDLALASG-KIYQDEGFNY-IKPSF-ETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIR 158 (511)
Q Consensus 82 ~~iGaGRiv~q~l~rI~~ai~~g-~~~~n~~~~~-~~~~~-~~~~lHl~GLlSdGGVHsh~~Hl~al~~~a~~~g~~~v~ 158 (511)
+++|||.|+-. .+++.+++.| +|.-.|.+.. +.+.. ..+..-+.| +|+-.+ +..|.+.|++-|-
T Consensus 63 ~~iGaGTV~~~--~~~~~a~~aGA~fivsp~~~~~v~~~~~~~~~~~~~G------~~t~~E-----~~~A~~~Gad~vk 129 (206)
T PRK09140 63 ALIGAGTVLSP--EQVDRLADAGGRLIVTPNTDPEVIRRAVALGMVVMPG------VATPTE-----AFAALRAGAQALK 129 (206)
T ss_pred cEEeEEecCCH--HHHHHHHHcCCCEEECCCCCHHHHHHHHHCCCcEEcc------cCCHHH-----HHHHHHcCCCEEE
Confidence 78999999875 5889999988 4444454443 44444 346666766 665533 3566788987454
Q ss_pred EEEeecCCCCCCCchHHHHHHHHHHH
Q 010407 159 LHILTDGRDVLDGSSVGFVETIEKDL 184 (511)
Q Consensus 159 vH~~~DGRDt~p~s~~~yl~~l~~~~ 184 (511)
+|- +.+ -+.+|++++...+
T Consensus 130 --~Fp----a~~-~G~~~l~~l~~~~ 148 (206)
T PRK09140 130 --LFP----ASQ-LGPAGIKALRAVL 148 (206)
T ss_pred --ECC----CCC-CCHHHHHHHHhhc
Confidence 343 233 4588888776544
No 115
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=24.56 E-value=2e+02 Score=30.61 Aligned_cols=92 Identities=17% Similarity=0.283 Sum_probs=57.0
Q ss_pred CcccccccCCCceEEeecCCccccccCC----cC------CCHHHHHHHHHHHH----HcCCCcEEEEecCCcccCCCCC
Q 010407 367 GNRSGYFDSNLEEYVEIPSDSGITFNVQ----PK------MKALEIAERAKKAI----LSRRFHQVRVNLPNSDMVGHTG 432 (511)
Q Consensus 367 GG~~~~~~~~ge~r~li~sp~V~tyDl~----pe------msa~ev~d~~i~al----~~~~yDfV~vnfanpDmvGHtg 432 (511)
||....| .+|+ -.|.|.|.|+|.. |. +...++++.=.+|- ++-..|+|.+|+-.+|=-=|.-
T Consensus 107 GGera~y--~Fee--PqPnppvVtfDVFD~p~pglpkpire~~~dVmedP~eWArk~Vk~fgadmvTiHlIsTdPki~D~ 182 (403)
T COG2069 107 GGERAFY--RFEE--PQPNPPVVTFDVFDIPRPGLPKPIREHYDDVMEDPGEWARKCVKKFGADMVTIHLISTDPKIKDT 182 (403)
T ss_pred cCccccc--ccCC--CCCCCCeeEEEeccCCCCCCchhHHHHHHHHhhCHHHHHHHHHHHhCCceEEEEeecCCccccCC
Confidence 5555666 5665 3466668888762 11 22233333333332 3345799999999999888887
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEeCCCCChhh
Q 010407 433 DIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAED 473 (511)
Q Consensus 433 d~ea~~kAIE~vD~~Lg~ll~al~~~g~~lIITADHGN~E~ 473 (511)
..+.+.+.+|.| +++++ .=||..--||+|.
T Consensus 183 p~~EAak~lEdv-------LqAVd----vPiiiGGSGnpeK 212 (403)
T COG2069 183 PAKEAAKTLEDV-------LQAVD----VPIIIGGSGNPEK 212 (403)
T ss_pred CHHHHHHHHHHH-------HHhcC----cCEEecCCCCCcc
Confidence 777777666654 55554 3455566888875
No 116
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=23.15 E-value=2.2e+02 Score=24.92 Aligned_cols=31 Identities=16% Similarity=0.141 Sum_probs=14.4
Q ss_pred ceEEEEeecCCCccccHHhHHHHHHHHHHcCC
Q 010407 123 TLHLIGLLSDGGVHSRLDQLQLLLKGASERGA 154 (511)
Q Consensus 123 ~lHl~GLlSdGGVHsh~~Hl~al~~~a~~~g~ 154 (511)
...++=|+|||-.++-. ....+++.++++|+
T Consensus 103 ~~~~iiliTDG~~~~~~-~~~~~~~~~~~~~v 133 (161)
T cd01450 103 VPKVIIVLTDGRSDDGG-DPKEAAAKLKDEGI 133 (161)
T ss_pred CCeEEEEECCCCCCCCc-chHHHHHHHHHCCC
Confidence 33444555555443322 34455555555543
No 117
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=23.00 E-value=3e+02 Score=30.17 Aligned_cols=33 Identities=9% Similarity=-0.032 Sum_probs=28.8
Q ss_pred cCCCcEEEEecCCcccCCCCCCHHHHHHHHHHH
Q 010407 412 SRRFHQVRVNLPNSDMVGHTGDIEATVVACKAA 444 (511)
Q Consensus 412 ~~~yDfV~vnfanpDmvGHtgd~ea~~kAIE~v 444 (511)
.-..|+|++++...|=-|....++.+.++++.|
T Consensus 151 ~~~aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V 183 (389)
T TIGR00381 151 EFGADMVTIHLISTDPKLDDKSPSEAAKVLEDV 183 (389)
T ss_pred HhCCCEEEEEecCCCccccccCHHHHHHHHHHH
Confidence 446899999999999989988888888888887
No 118
>PRK05362 phosphopentomutase; Provisional
Probab=22.95 E-value=83 Score=34.28 Aligned_cols=35 Identities=17% Similarity=0.108 Sum_probs=25.3
Q ss_pred CcEEEEEEeccCCCCCCCCCccccCCCccHHHHHh
Q 010407 16 NIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKK 50 (511)
Q Consensus 16 ~~v~L~IlDGwG~~~~~~~NAi~~A~tp~~d~l~~ 50 (511)
++++|||||++|++...+.+.+-....-++-++.+
T Consensus 2 ~r~~~ivlDs~GiG~~~Da~~~~D~ganTl~hi~~ 36 (394)
T PRK05362 2 KRVFLIVLDSVGIGAAPDAAKFGDEGADTLGHIAE 36 (394)
T ss_pred CeEEEEEecCCcCCCCCCHHHhCCCCccHHHHHHH
Confidence 45999999999999777666555555555555554
No 119
>PTZ00445 p36-lilke protein; Provisional
Probab=22.76 E-value=1.5e+02 Score=29.93 Aligned_cols=67 Identities=9% Similarity=0.103 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHHHHHcCCCcEEEEecCCcccCCCCCC---HH-HHHHHHHHHHHHHHHHHHHHHhcCCEEE
Q 010407 397 MKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGD---IE-ATVVACKAADEAVKIIIDAIEKVGGIYL 463 (511)
Q Consensus 397 msa~ev~d~~i~al~~~~yDfV~vnfanpDmvGHtgd---~e-a~~kAIE~vD~~Lg~ll~al~~~g~~lI 463 (511)
.+..+.++..++.|++...-+|++.|.|+=+.=|+|- +. .-...++.+-..+..+++++++.|..|+
T Consensus 25 ~~~~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~ 95 (219)
T PTZ00445 25 LNPHESADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKIS 95 (219)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEE
Confidence 3566889999999998888999999999976779863 22 2355677778888899999998886433
No 120
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=22.74 E-value=3.1e+02 Score=25.73 Aligned_cols=61 Identities=11% Similarity=0.159 Sum_probs=35.3
Q ss_pred HHHHHHHHHHcCCCcEEEEecCCcccCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEeCC
Q 010407 402 IAERAKKAILSRRFHQVRVNLPNSDMVGHT-GDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTAD 467 (511)
Q Consensus 402 v~d~~i~al~~~~yDfV~vnfanpDmvGHt-gd~ea~~kAIE~vD~~Lg~ll~al~~~g~~lIITAD 467 (511)
..+.+.+.+....+|+|+++.. +...|+. -+.. ..++.+..++..+.+.++. |+.+++...
T Consensus 86 ~~~~l~~~~~~~~~D~V~~~~~-~~~~g~~~~~~~---~~~~~~~~~l~~~~~~Lkp-gG~lvi~~~ 147 (188)
T TIGR00438 86 VLNKIRERVGDDKVDVVMSDAA-PNISGYWDIDHL---RSIDLVELALDIAKEVLKP-KGNFVVKVF 147 (188)
T ss_pred HHHHHHHHhCCCCccEEEcCCC-CCCCCCccccHH---HHHHHHHHHHHHHHHHccC-CCEEEEEEc
Confidence 3344444454557999998764 4445543 2221 1234456677777777776 557777543
No 121
>TIGR01696 deoB phosphopentomutase. This protein is involved in the purine and pyrimidine salvage pathway. It catalyzes the conversion of D-ribose 1-phosphate to D-ribose 5-phosphate and the conversion of 2-deoxy-D-ribose 1-phosphate to 2-deoxy-D-ribose 5-phosphate. The seed members of this protein are characterized deoB proteins from E.Coli and Bacillus. This model matches pfam01676 for Metalloenzyme superfamily.
Probab=22.65 E-value=82 Score=34.20 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=29.8
Q ss_pred cEEEEEEeccCCCCCCCCCccccCCCccHHHHHhhCC
Q 010407 17 IVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAP 53 (511)
Q Consensus 17 ~v~L~IlDGwG~~~~~~~NAi~~A~tp~~d~l~~~~p 53 (511)
+++|+|||++|++...+.+.+-....-++-++.+..+
T Consensus 1 R~~~iVlDs~GiG~~pDa~~~~D~ganTl~hi~~~~~ 37 (381)
T TIGR01696 1 RVFLIVMDSVGIGEAPDAADFGDEGAHTLGHIAEACA 37 (381)
T ss_pred CEEEEEecCCcCCCCCCHHHhCCCCccHHHHHHHhcC
Confidence 3899999999999888877777777777777777543
No 122
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=22.62 E-value=3e+02 Score=25.52 Aligned_cols=62 Identities=11% Similarity=-0.031 Sum_probs=35.5
Q ss_pred HHHHHHcCCCcEEEEecCCcccCCCCCCH----HHHHHHHHHHHHHHHHHHHHHHhcCCEEEEeCC
Q 010407 406 AKKAILSRRFHQVRVNLPNSDMVGHTGDI----EATVVACKAADEAVKIIIDAIEKVGGIYLVTAD 467 (511)
Q Consensus 406 ~i~al~~~~yDfV~vnfanpDmvGHtgd~----ea~~kAIE~vD~~Lg~ll~al~~~g~~lIITAD 467 (511)
+.+.+.+.++|+|++.+..=|......+. ....+-.+.+.+.+..+++.+++.+-.+|+.+.
T Consensus 51 ~~~~l~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~~~~~~~~vili~~ 116 (200)
T cd01829 51 LKELIAEEKPDVVVVFLGANDRQDIRDGDGYLKFGSPEWEEEYRQRIDELLNVARAKGVPVIWVGL 116 (200)
T ss_pred HHHHHhcCCCCEEEEEecCCCCccccCCCceeecCChhHHHHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 34445567899999999887864222210 000112344455666677777766666666654
No 123
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=22.51 E-value=1.6e+02 Score=29.21 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.4
Q ss_pred ccHHhHHHHHHHHHHcCCCeEEEEE
Q 010407 137 SRLDQLQLLLKGASERGAKRIRLHI 161 (511)
Q Consensus 137 sh~~Hl~al~~~a~~~g~~~v~vH~ 161 (511)
..+++++..+++|++.|++.|.+|.
T Consensus 81 ~~~~~l~~~i~~A~~lGa~~vv~h~ 105 (273)
T smart00518 81 KSIERLIDEIKRCEELGIKALVFHP 105 (273)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 4578999999999999999999986
No 124
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=22.19 E-value=1.1e+02 Score=31.50 Aligned_cols=40 Identities=23% Similarity=0.320 Sum_probs=31.3
Q ss_pred eEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEEeecC
Q 010407 124 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDG 165 (511)
Q Consensus 124 lHl~GLlSdGGVHsh~~Hl~al~~~a~~~g~~~v~vH~~~DG 165 (511)
-.++=|+|||.-+-|-.-...+++.|+++|+. + +=+++|.
T Consensus 165 ~qlilLISDG~~~~~e~~~~~~~r~a~e~~i~-l-~~I~ld~ 204 (266)
T cd01460 165 WQLLLIISDGRGEFSEGAQKVRLREAREQNVF-V-VFIIIDN 204 (266)
T ss_pred ccEEEEEECCCcccCccHHHHHHHHHHHcCCe-E-EEEEEcC
Confidence 48999999999877777777779999999984 3 3345655
No 125
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=22.17 E-value=1.8e+02 Score=28.75 Aligned_cols=25 Identities=20% Similarity=0.293 Sum_probs=21.1
Q ss_pred cHHhHHHHHHHHHHcCCCeEEEEEe
Q 010407 138 RLDQLQLLLKGASERGAKRIRLHIL 162 (511)
Q Consensus 138 h~~Hl~al~~~a~~~g~~~v~vH~~ 162 (511)
.++++..+++.|++.|++.|.++.+
T Consensus 92 ~~~~~~~~i~~a~~lG~~~v~~~~~ 116 (284)
T PRK13210 92 ALEIMKKAIRLAQDLGIRTIQLAGY 116 (284)
T ss_pred HHHHHHHHHHHHHHhCCCEEEECCc
Confidence 4688999999999999998877643
No 126
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=22.09 E-value=5.2e+02 Score=24.65 Aligned_cols=80 Identities=16% Similarity=0.104 Sum_probs=45.3
Q ss_pred cCCCcCchhHhhhhhhcCCCceEEEEeecCCCccccHHhHHHHHHHHHHcCCCeEEEEEeecCCC-C-CCCchHHHH---
Q 010407 103 SGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD-V-LDGSSVGFV--- 177 (511)
Q Consensus 103 ~g~~~~n~~~~~~~~~~~~~~lHl~GLlSdGGVHsh~~Hl~al~~~a~~~g~~~v~vH~~~DGRD-t-~p~s~~~yl--- 177 (511)
.+++.+.+.|.++++.+ |.+-++...=.+...+....|+++|++.||+.+..--|.-.-+ . .+.....+.
T Consensus 49 ~~d~~~~~~l~~al~g~-----d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~~~~~~~~~~~~p~~~~~~~k 123 (233)
T PF05368_consen 49 EADYDDPESLVAALKGV-----DAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSSFGADYDESSGSEPEIPHFDQK 123 (233)
T ss_dssp ES-TT-HHHHHHHHTTC-----SEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESEESSGTTTTTTSTTHHHHHHHH
T ss_pred ecccCCHHHHHHHHcCC-----ceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEEecccccccccccccchhhhhh
Confidence 35565656665555443 3344444433377899999999999999998774444432221 1 112233333
Q ss_pred HHHHHHHHHH
Q 010407 178 ETIEKDLAEL 187 (511)
Q Consensus 178 ~~l~~~~~~~ 187 (511)
.++|+.|++.
T Consensus 124 ~~ie~~l~~~ 133 (233)
T PF05368_consen 124 AEIEEYLRES 133 (233)
T ss_dssp HHHHHHHHHC
T ss_pred hhhhhhhhhc
Confidence 4677777776
No 127
>COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=21.88 E-value=87 Score=35.47 Aligned_cols=43 Identities=35% Similarity=0.614 Sum_probs=35.4
Q ss_pred CceEEEE--eecCCCccc---------------------cHHhHHHHHHHHHHcCCCeEEEEEeecC
Q 010407 122 GTLHLIG--LLSDGGVHS---------------------RLDQLQLLLKGASERGAKRIRLHILTDG 165 (511)
Q Consensus 122 ~~lHl~G--LlSdGGVHs---------------------h~~Hl~al~~~a~~~g~~~v~vH~~~DG 165 (511)
+.+.+.| ++.||+..+ -.+.|..+++.|.++|+ +|.||+|.|+
T Consensus 280 ~~~~~g~~K~f~Dgslg~rtA~l~~~y~d~~~~~G~~l~~~e~l~~~v~~a~~~gl-~v~vHAiGD~ 345 (535)
T COG1574 280 GLLQGGGVKLFADGSLGERTALLAAPYADGPGPSGELLLTEEELEELVRAADERGL-PVAVHAIGDG 345 (535)
T ss_pred ceeecCceEEEEeCCCCcchhhccCcccCCCCCCCCcccCHHHHHHHHHHHHHCCC-cEEEEEechH
Confidence 3677777 777777654 45789999999999999 6999999997
No 128
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=21.70 E-value=2.1e+02 Score=27.79 Aligned_cols=48 Identities=10% Similarity=0.028 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHHHHcCCCcEEEEecCCcccCCCC-CCHHHHHHHHHHH
Q 010407 397 MKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHT-GDIEATVVACKAA 444 (511)
Q Consensus 397 msa~ev~d~~i~al~~~~yDfV~vnfanpDmvGHt-gd~ea~~kAIE~v 444 (511)
+...+-+++.++..++...+.-..-|....+|+|- .+++.+.++|.++
T Consensus 191 l~~~~~ve~~~~~~~~~G~~V~~~~f~~S~HV~H~r~~p~~Y~~~v~~f 239 (240)
T PF05705_consen 191 LIPWRDVEEHAEEARRKGWDVRAEKFEDSPHVAHLRKHPDRYWRAVDEF 239 (240)
T ss_pred CcCHHHHHHHHHHHHHcCCeEEEecCCCCchhhhcccCHHHHHHHHHhh
Confidence 33345566777766667789999999999999996 5799999888753
No 129
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=21.56 E-value=1.6e+02 Score=29.43 Aligned_cols=55 Identities=15% Similarity=0.030 Sum_probs=0.0
Q ss_pred cHHhHHHHHHHHHHcCCCeEEEEE--eecCCCCC--CCchHHHHHHHHHHHHHHhcCCCCceEE
Q 010407 138 RLDQLQLLLKGASERGAKRIRLHI--LTDGRDVL--DGSSVGFVETIEKDLAELRGKGVDAQIA 197 (511)
Q Consensus 138 h~~Hl~al~~~a~~~g~~~v~vH~--~~DGRDt~--p~s~~~yl~~l~~~~~~~~~~~~~~~ia 197 (511)
.++++...+++|++.|++.|.++. ..++.++. -....++++++.+..++. |+ +|+
T Consensus 92 ~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~---Gv--~l~ 150 (279)
T TIGR00542 92 GLEIMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVELAARA---QV--TLA 150 (279)
T ss_pred HHHHHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHHHHHc---CC--EEE
No 130
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=21.48 E-value=2.4e+02 Score=28.72 Aligned_cols=103 Identities=20% Similarity=0.355 Sum_probs=70.2
Q ss_pred ccccchHHHHHHHhcC---CCcCchhHhhhhhhcCCCceEEE-----EeecCCC--ccccHHhHHHHHHHHHHcCCCeEE
Q 010407 89 IFAQGAKLVDLALASG---KIYQDEGFNYIKPSFETGTLHLI-----GLLSDGG--VHSRLDQLQLLLKGASERGAKRIR 158 (511)
Q Consensus 89 iv~q~l~rI~~ai~~g---~~~~n~~~~~~~~~~~~~~lHl~-----GLlSdGG--VHsh~~Hl~al~~~a~~~g~~~v~ 158 (511)
|-.+|+.++.+.++.. ++.-++.+.++...++...+=|+ -+-|+|| |.++.++|..+++.+++.|+ .
T Consensus 49 I~d~Dv~~L~~~~~~~lNlE~a~t~em~~ia~~~kP~~vtLVPEkr~E~TTegGldv~~~~~~l~~~i~~l~~~gI---~ 125 (234)
T cd00003 49 IQDRDVRLLRELVRTELNLEMAPTEEMLEIALEVKPHQVTLVPEKREELTTEGGLDVAGQAEKLKPIIERLKDAGI---R 125 (234)
T ss_pred CCHHHHHHHHHHcCCCEEeccCCCHHHHHHHHHCCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCC---E
Confidence 5678899999988632 55566676666554443333332 4568998 67799999999999999998 4
Q ss_pred EEEeecCCCCCCCchHHHHHHHHHHHHHHhcCCCCceEEEEeecccccccC
Q 010407 159 LHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDR 209 (511)
Q Consensus 159 vH~~~DGRDt~p~s~~~yl~~l~~~~~~~~~~~~~~~iasv~GRyyvaMDR 209 (511)
|=+|.|- . .++++.. +++ |.. .|===.|.|--+++.
T Consensus 126 VSLFiDP-----d-----~~qi~~A-~~~---GAd-~VELhTG~Ya~a~~~ 161 (234)
T cd00003 126 VSLFIDP-----D-----PEQIEAA-KEV---GAD-RVELHTGPYANAYDK 161 (234)
T ss_pred EEEEeCC-----C-----HHHHHHH-HHh---CcC-EEEEechhhhcCCCc
Confidence 6778862 2 3555543 344 665 676668999546654
No 131
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=21.46 E-value=73 Score=31.36 Aligned_cols=89 Identities=19% Similarity=0.317 Sum_probs=60.1
Q ss_pred hhhhcccCCccccccchHHHHHHHhcC-CCcCchhHhh-hhhhc-CCCceEEEEeecCCCccccHHhHHHHHHHHHHcCC
Q 010407 78 EVGHNALGAGRIFAQGAKLVDLALASG-KIYQDEGFNY-IKPSF-ETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGA 154 (511)
Q Consensus 78 EVGH~~iGaGRiv~q~l~rI~~ai~~g-~~~~n~~~~~-~~~~~-~~~~lHl~GLlSdGGVHsh~~Hl~al~~~a~~~g~ 154 (511)
+..++.+|||-|.- .....++++.| +|.=.|.+.. +++.+ +.+-+.+=|-++..- +..|.+.|+
T Consensus 56 ~~p~~~vGAGTV~~--~e~a~~a~~aGA~FivSP~~~~~v~~~~~~~~i~~iPG~~TptE-----------i~~A~~~G~ 122 (196)
T PF01081_consen 56 EFPDLLVGAGTVLT--AEQAEAAIAAGAQFIVSPGFDPEVIEYAREYGIPYIPGVMTPTE-----------IMQALEAGA 122 (196)
T ss_dssp HHTTSEEEEES--S--HHHHHHHHHHT-SEEEESS--HHHHHHHHHHTSEEEEEESSHHH-----------HHHHHHTT-
T ss_pred HCCCCeeEEEeccC--HHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCcccCCcCCHHH-----------HHHHHHCCC
Confidence 45678999999965 67899999988 5667777765 66666 568899999998753 336778898
Q ss_pred CeEEEEEeecCCCCCCCchHHHHHHHHHHHH
Q 010407 155 KRIRLHILTDGRDVLDGSSVGFVETIEKDLA 185 (511)
Q Consensus 155 ~~v~vH~~~DGRDt~p~s~~~yl~~l~~~~~ 185 (511)
+ .|=+| ......|.+|++.|..-+.
T Consensus 123 ~--~vK~F----PA~~~GG~~~ik~l~~p~p 147 (196)
T PF01081_consen 123 D--IVKLF----PAGALGGPSYIKALRGPFP 147 (196)
T ss_dssp S--EEEET----TTTTTTHHHHHHHHHTTTT
T ss_pred C--EEEEe----cchhcCcHHHHHHHhccCC
Confidence 6 35556 2333345889998876444
No 132
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=21.43 E-value=2.6e+02 Score=30.34 Aligned_cols=33 Identities=27% Similarity=0.304 Sum_probs=26.0
Q ss_pred cHHhHHHHHHHHHHcCCCeEEEEEeecCCCCCCC
Q 010407 138 RLDQLQLLLKGASERGAKRIRLHILTDGRDVLDG 171 (511)
Q Consensus 138 h~~Hl~al~~~a~~~g~~~v~vH~~~DGRDt~p~ 171 (511)
-|+|++..+++|++.|.+.| .-.+-||.+-+++
T Consensus 114 AIe~~k~~idiA~eLGa~~I-~iW~~DG~~~~g~ 146 (378)
T TIGR02635 114 AIDHLLECVDIAKKTGSKDI-SLWLADGTNYPGQ 146 (378)
T ss_pred HHHHHHHHHHHHHHhCCCeE-EEecCCcCcCCcc
Confidence 37999999999999999743 3334599998883
No 133
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=21.13 E-value=2.1e+02 Score=22.49 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=29.0
Q ss_pred ceEEEEeecCCCccccHHhHHHHHHHHHHcCCCeE
Q 010407 123 TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRI 157 (511)
Q Consensus 123 ~lHl~GLlSdGGVHsh~~Hl~al~~~a~~~g~~~v 157 (511)
.++.+++-..+|.- .-+.|.+|.++|++.|...+
T Consensus 8 g~~~v~~~~~~G~i-~~~~l~~la~ia~~yg~~~i 41 (69)
T PF03460_consen 8 GFYMVRIRIPGGRI-SAEQLRALAEIAEKYGDGEI 41 (69)
T ss_dssp TEEEEEEB-GGGEE-EHHHHHHHHHHHHHHSTSEE
T ss_pred eEEEEEEeCCCEEE-CHHHHHHHHHHHHHhCCCeE
Confidence 68999999999999 77899999999999997533
No 134
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=20.99 E-value=5.5e+02 Score=22.99 Aligned_cols=11 Identities=9% Similarity=-0.170 Sum_probs=5.5
Q ss_pred cccHHHHHHhC
Q 010407 335 DRTSGEYLVHN 345 (511)
Q Consensus 335 ~~tl~evLs~~ 345 (511)
...+.+.|++.
T Consensus 23 ~~~l~~~l~~~ 33 (177)
T cd01822 23 PALLQKRLDAR 33 (177)
T ss_pred HHHHHHHHHHh
Confidence 34455555543
No 135
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=20.85 E-value=5.1e+02 Score=25.36 Aligned_cols=36 Identities=19% Similarity=0.345 Sum_probs=20.1
Q ss_pred ceEEEEeecCCCccc----------cHHhHHHHHHHHHHcCCCeEEEEE
Q 010407 123 TLHLIGLLSDGGVHS----------RLDQLQLLLKGASERGAKRIRLHI 161 (511)
Q Consensus 123 ~lHl~GLlSdGGVHs----------h~~Hl~al~~~a~~~g~~~v~vH~ 161 (511)
.+++..-.|| .|. +++.+...++.|++.|+ +|.+.+
T Consensus 90 ~i~i~~~~s~--~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~-~v~~~~ 135 (265)
T cd03174 90 EVRIFDSASE--THSRKNLNKSREEDLENAEEAIEAAKEAGL-EVEGSL 135 (265)
T ss_pred EEEEEEecCH--HHHHHHhCCCHHHHHHHHHHHHHHHHHCCC-eEEEEE
Confidence 5666666665 333 23555666666666665 344444
No 136
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=20.71 E-value=2.5e+02 Score=26.43 Aligned_cols=11 Identities=27% Similarity=0.244 Sum_probs=7.7
Q ss_pred EEEEEeccCCC
Q 010407 19 AVVVLDGWGEF 29 (511)
Q Consensus 19 ~L~IlDGwG~~ 29 (511)
|+++||+=|-=
T Consensus 5 vv~vlD~S~Sm 15 (186)
T cd01480 5 ITFVLDSSESV 15 (186)
T ss_pred EEEEEeCCCcc
Confidence 56789986643
No 137
>PRK06886 hypothetical protein; Validated
Probab=20.48 E-value=1e+03 Score=25.13 Aligned_cols=75 Identities=13% Similarity=0.128 Sum_probs=44.1
Q ss_pred HHhHHHHHHHHHHcCCCeEEEEEeecCCCCCCCchHHHHHHHHHHHHHHhcCCCCceEEEEeecccccccCCCCChHHHH
Q 010407 139 LDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVK 218 (511)
Q Consensus 139 ~~Hl~al~~~a~~~g~~~v~vH~~~DGRDt~p~s~~~yl~~l~~~~~~~~~~~~~~~iasv~GRyyvaMDR~d~rw~rv~ 218 (511)
.+|+..+.++|++.|+ .|-+|+- -.+.+.. ..++.+.+...+. |..++ .+++=-. +|+- ...+...
T Consensus 161 ~e~l~~~~~lA~~~g~-~Id~Hld--e~~~~~~---~~le~l~~~~~~~---Gl~gr--V~~sH~~-~L~~--~~~~~~~ 226 (329)
T PRK06886 161 LEAMDILLDTAKSLGK-MVHVHVD--QFNTPKE---KETEQLCDKTIEH---GMQGR--VVAIHGI-SIGA--HSKEYRY 226 (329)
T ss_pred HHHHHHHHHHHHHcCC-CeEEeEC--CCCchhH---HHHHHHHHHHHHc---CCCCC--EEEEEec-cccC--cChhhHH
Confidence 5789999999999998 4667764 3333332 3344444433344 66545 3344445 6663 3334555
Q ss_pred HHHHHHHhC
Q 010407 219 RGWDAQVLG 227 (511)
Q Consensus 219 ~ay~a~~~g 227 (511)
+.++.|..-
T Consensus 227 ~~i~~La~a 235 (329)
T PRK06886 227 RLYQKMREA 235 (329)
T ss_pred HHHHHHHHc
Confidence 666766643
No 138
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=20.47 E-value=4.2e+02 Score=26.65 Aligned_cols=47 Identities=23% Similarity=0.384 Sum_probs=30.3
Q ss_pred HHhHHHHHHHHHHcCCCeEEEEEeecCCCCCCCchHHHHHHHHHHHHHH
Q 010407 139 LDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAEL 187 (511)
Q Consensus 139 ~~Hl~al~~~a~~~g~~~v~vH~~~DGRDt~p~s~~~yl~~l~~~~~~~ 187 (511)
.+.+...++.+++.|++ .+|+++.|.+..+....+|++++.+.+++.
T Consensus 64 ~eei~~~~~~~~~~g~~--~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~ 110 (296)
T TIGR00433 64 VDEVLEEARKAKAAGAT--RFCLVASGRGPKDREFMEYVEAMVQIVEEM 110 (296)
T ss_pred HHHHHHHHHHHHHCCCC--EEEEEEecCCCChHHHHHHHHHHHHHHHhC
Confidence 34555556666677775 355667777777766677777776655544
No 139
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=20.31 E-value=2.7e+02 Score=28.57 Aligned_cols=98 Identities=24% Similarity=0.380 Sum_probs=65.9
Q ss_pred ccccchHHHHHHHhcC---CCcCchhHhhhhhhcCCCceEEE-----EeecCCC--ccccHHhHHHHHHHHHHcCCCeEE
Q 010407 89 IFAQGAKLVDLALASG---KIYQDEGFNYIKPSFETGTLHLI-----GLLSDGG--VHSRLDQLQLLLKGASERGAKRIR 158 (511)
Q Consensus 89 iv~q~l~rI~~ai~~g---~~~~n~~~~~~~~~~~~~~lHl~-----GLlSdGG--VHsh~~Hl~al~~~a~~~g~~~v~ 158 (511)
|-.+|+.+|.+.+... ++.-++.+.++...++...+=|+ .+-|+|| |.+|.++|..+++.+++.|+ .
T Consensus 52 I~d~Dv~~L~~~~~~~lNlE~a~~~em~~ia~~~kP~~vtLVPE~r~E~TTegGldv~~~~~~l~~~i~~L~~~gI---r 128 (239)
T PRK05265 52 IRDRDVRLLRETLKTELNLEMAATEEMLDIALEVKPHQVTLVPEKREELTTEGGLDVAGQFDKLKPAIARLKDAGI---R 128 (239)
T ss_pred CCHHHHHHHHHhcCCCEEeccCCCHHHHHHHHHCCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCC---E
Confidence 4578899999998632 44556666665544443333332 4568999 56699999999999999997 4
Q ss_pred EEEeecCCCCCCCchHHHHHHHHHHHHHHhcCCCCceEEEEeeccc
Q 010407 159 LHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMY 204 (511)
Q Consensus 159 vH~~~DGRDt~p~s~~~yl~~l~~~~~~~~~~~~~~~iasv~GRyy 204 (511)
|=+|.| |. .++++.. +++ |.. +|===.|.|-
T Consensus 129 VSLFid-----P~-----~~qi~~A-~~~---GAd-~VELhTG~yA 159 (239)
T PRK05265 129 VSLFID-----PD-----PEQIEAA-AEV---GAD-RIELHTGPYA 159 (239)
T ss_pred EEEEeC-----CC-----HHHHHHH-HHh---CcC-EEEEechhhh
Confidence 677886 32 3455432 344 665 6666678885
Done!