BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010408
(511 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AC0|A Chain A, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|B Chain B, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|C Chain C, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|D Chain D, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
Length = 845
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 96/309 (31%), Positives = 146/309 (47%), Gaps = 47/309 (15%)
Query: 196 QAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSR 255
QAG + ++ AAE+AA+ D VL++GL+ E E DR + LP R ELV
Sbjct: 551 QAGVIKAIDDDEEIRNAAELAAKH-DKAVLIIGLNGEWETEGYDRENMDLPKRTNELVRA 609
Query: 256 VAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGK 315
V KA+ V+ V G PV+ + ++ A++ Y G G AIADVL+G P GK
Sbjct: 610 VLKANPNTVI-VNQSGTPVEFPWLED---ANALVQAWYGGNELGNAIADVLYGDVVPNGK 665
Query: 316 LPMTWYPQDYVSRLPMTDMRMRAARGYPGRT----YRFYKG---PVVFPFGHGMSYTTFA 368
L ++W P + + R G YR+Y+ V FPFG+G+SYTTF
Sbjct: 666 LSLSW-PFKLQDNPAFLNFKTEFGRVIYGEDIFVGYRYYEKLQRKVAFPFGYGLSYTTFE 724
Query: 369 HTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGD-MAGT 427
+S FK T +D +++ VD+KNTGD AG+
Sbjct: 725 LDISD---------------FKVT--------------DDKIAIS--VDVKNTGDKFAGS 753
Query: 428 HTLLVFAKPPAGNWS-PNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVV-DKFGIRRIP 485
+ V+ S P K+L GF+KVH+ G ++V +D+ + +S ++ G +
Sbjct: 754 EVVQVYFSALNSKVSRPVKELKGFEKVHLEPGEKKTVNIDLELKDAISYFNEELGKWHVE 813
Query: 486 MGEHSLHIG 494
GE+ + +G
Sbjct: 814 AGEYLVSVG 822
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 71/134 (52%), Gaps = 9/134 (6%)
Query: 14 PNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDN 73
P N+ R P GRG E+ EDP L G +S V+G+QG +AA KH+ DL++
Sbjct: 101 PTTNMQRGPLGGRGFESFSEDPYLAGMATSSVVKGMQGEG-----IAATVKHFVCNDLED 155
Query: 74 WNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNT 133
R+ N+ VS++ L + Y PF+ V +M +YN+VNG+ +L +
Sbjct: 156 ----QRFSSNSIVSERALREIYLEPFRLAVKHANPVCIMTAYNKVNGEHCSQSKKLLIDI 211
Query: 134 IHGQWRLDGYIVSD 147
+ +W+ DG ++SD
Sbjct: 212 LRDEWKWDGMLMSD 225
>pdb|3ABZ|A Chain A, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|B Chain B, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|C Chain C, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|D Chain D, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
Length = 845
Score = 115 bits (287), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 96/309 (31%), Positives = 145/309 (46%), Gaps = 47/309 (15%)
Query: 196 QAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSR 255
QAG + ++ AAE+AA+ D VL++GL+ E E DR LP R ELV
Sbjct: 551 QAGVIKAIDDDEEIRNAAELAAKH-DKAVLIIGLNGEWETEGYDRENXDLPKRTNELVRA 609
Query: 256 VAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGK 315
V KA+ V+V G PV+ + ++ A++ Y G G AIADVL+G P GK
Sbjct: 610 VLKANPN-TVIVNQSGTPVEFPWLED---ANALVQAWYGGNELGNAIADVLYGDVVPNGK 665
Query: 316 LPMTWYPQDYVSRLPMTDMRMRAARGYPGRT----YRFYKG---PVVFPFGHGMSYTTFA 368
L ++W P + + R G YR+Y+ V FPFG+G+SYTTF
Sbjct: 666 LSLSW-PFKLQDNPAFLNFKTEFGRVIYGEDIFVGYRYYEKLQRKVAFPFGYGLSYTTFE 724
Query: 369 HTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGD-MAGT 427
+S FK T +D +++ VD+KNTGD AG+
Sbjct: 725 LDISD---------------FKVT--------------DDKIAIS--VDVKNTGDKFAGS 753
Query: 428 HTLLVFAKPPAGNWS-PNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVV-DKFGIRRIP 485
+ V+ S P K+L GF+KVH+ G ++V +D+ + +S ++ G +
Sbjct: 754 EVVQVYFSALNSKVSRPVKELKGFEKVHLEPGEKKTVNIDLELKDAISYFNEELGKWHVE 813
Query: 486 MGEHSLHIG 494
GE+ + +G
Sbjct: 814 AGEYLVSVG 822
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 9/134 (6%)
Query: 14 PNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDN 73
P N R P GRG E+ EDP L G +S V+G QG +AA KH+ DL++
Sbjct: 101 PTTNXQRGPLGGRGFESFSEDPYLAGXATSSVVKGXQGEG-----IAATVKHFVCNDLED 155
Query: 74 WNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNT 133
R+ N+ VS++ L + Y PF+ V + +YN+VNG+ +L +
Sbjct: 156 ----QRFSSNSIVSERALREIYLEPFRLAVKHANPVCIXTAYNKVNGEHCSQSKKLLIDI 211
Query: 134 IHGQWRLDGYIVSD 147
+ +W+ DG + SD
Sbjct: 212 LRDEWKWDGXLXSD 225
>pdb|4I3G|A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose.
pdb|4I3G|B Chain B, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose
Length = 829
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 74/134 (55%), Gaps = 10/134 (7%)
Query: 14 PNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDN 73
P +N R P GR ET EDP+++ + A + ++G+QG + KH+ A + +N
Sbjct: 151 PMMNNIRVPHGGRNYETFSEDPLVSSRTAVAQIKGIQG-----AGLMTTAKHFAANNQEN 205
Query: 74 WNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNT 133
+R+ NA V +Q L + F+A G AS MC+YN +NGKP+C + ++L N
Sbjct: 206 ----NRFSVNANVDEQTLREIEFPAFEASSKAG-AASFMCAYNGLNGKPSCGNDELLNNV 260
Query: 134 IHGQWRLDGYIVSD 147
+ QW G+++SD
Sbjct: 261 LRTQWGFQGWVMSD 274
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 83/273 (30%), Positives = 123/273 (45%), Gaps = 68/273 (24%)
Query: 216 AARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVD 275
+AR+A T +V D E +DR L LPG Q +L+S VA A+ +V VL G V
Sbjct: 562 SARKAR-TAVVFAYDDGTEG--VDRPNLSLPGTQDKLISAVADANPNTIV-VLNTGSSVL 617
Query: 276 VSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYP----QDYVSRLPM 331
+ + + A+L + YPGQAG A A +L+G NP GKL + +P Q V+ P
Sbjct: 618 MPWLS---KTRAVLDMWYPGQAGAEATAALLYGDVNPSGKLTQS-FPAAENQHAVAGDPT 673
Query: 332 TDMRMRAARGYPG----RTYR---------FYKGPV--VFPFGHGMSYTTFAHTLSKAPN 376
+ YPG +TYR F K V +FPFGHG+SYT+F +
Sbjct: 674 S---------YPGVDNQQTYREGIHVGYRWFDKENVKPLFPFGHGLSYTSFTQS------ 718
Query: 377 QFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVF--A 434
A V T+ L + V ++N+G AG + + A
Sbjct: 719 ---------------------APTVVRTSTG---GLKVTVTVRNSGKRAGQEVVQAYLGA 754
Query: 435 KPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDI 467
P K+L+G+ KV + AG ++V +++
Sbjct: 755 SPNVTAPQAKKKLVGYTKVSLAAGEAKTVTVNV 787
>pdb|2X40|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glycerol
pdb|2X41|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glucose
Length = 721
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 76/135 (56%), Gaps = 9/135 (6%)
Query: 13 SPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLD 72
+P +NI R+P GR E EDPVL+G+ A+S+V+G+Q V AC KH+ A
Sbjct: 117 APAMNIHRNPLCGRNFEYYSEDPVLSGEMASSFVKGVQSQG-----VGACIKHFVA---- 167
Query: 73 NWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKN 132
N +R + VS++ L + Y F+ V + K SVM +YN++NGK + +LK
Sbjct: 168 NNQETNRMVVDTIVSERALREIYLRGFEIAVKKSKPWSVMSAYNKLNGKYCSQNEWLLKK 227
Query: 133 TIHGQWRLDGYIVSD 147
+ +W +G+++SD
Sbjct: 228 VLREEWGFEGFVMSD 242
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 87/318 (27%), Positives = 131/318 (41%), Gaps = 76/318 (23%)
Query: 217 ARQADATVLVMGLDQSIEAEFIDR----AGLLLPGRQQELVSRVAKA--SRGPVVLVLM- 269
A++ D V+V+ I E DR L + +L+ V++ +G V+VL+
Sbjct: 442 AKKNDVAVIVIS---RISGEGYDRKPVKGDFYLSDDETDLIKTVSREFHEQGKKVIVLLN 498
Query: 270 CGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRL 329
G PV+V ++ + IL V GQ G +ADVL GR NP GKLP T +P+DY S +
Sbjct: 499 IGSPVEVVSWRD--LVDGILLVWQAGQETGRIVADVLTGRINPSGKLPTT-FPRDY-SDV 554
Query: 330 PMTDMRMRAARGYPGRT----------------YRFYKGPVVFP---FGHGMSYTTFAHT 370
P + +PG YR+Y V P FG+G+SYTTF
Sbjct: 555 P--------SWTFPGEPKDNPQKVVYEEDIYVGYRYYDTFGVEPAYEFGYGLSYTTFE-- 604
Query: 371 LSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTL 430
Y+ N + +RV + I+NTG AG
Sbjct: 605 ----------------YSDLNVSFDGETLRVQYR-------------IENTGGRAGKEVS 635
Query: 431 LVFAKPPAGNW-SPNKQLIGFKKVH-VTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGE 488
V+ K P G P ++L F K + G + V L+I V S + + + GE
Sbjct: 636 QVYIKAPKGKIDKPFQELKAFHKTRLLNPGESEEVVLEIPVRDLASFNGEEWV--VEAGE 693
Query: 489 HSLHIGDLKHSISLQANL 506
+ + +G +I L+
Sbjct: 694 YEVRVGASSRNIKLKGTF 711
>pdb|3RRX|A Chain A, Crystal Structure Of Q683a Mutant Of
Exo-1,31,4-Beta-Glucanase (Exop) From Pseudoalteromonas
Sp. Bb1
Length = 822
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 84/172 (48%), Gaps = 18/172 (10%)
Query: 12 WS--PNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRL----KVAACCKH 65
WS P V + RD RWGR E+ EDP L +YA V G+QG+ G+ A KH
Sbjct: 157 WSFAPTVAVVRDDRWGRTYESYSEDPDLVKRYAGEMVTGIQGDVGADFLKGSNRIATAKH 216
Query: 66 YTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCA 125
+ D GVDR N + ++ L D ++ + + + +G V SVM S+N NGK
Sbjct: 217 FVG-DGGTERGVDRG--NTLIDEKGLRDIHSAGYFSAINQG-VQSVMASFNSWNGKRVHG 272
Query: 126 DPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPE-EAAADAIKAGV 176
D +L + + Q DG++VSD +N + + E A AI AGV
Sbjct: 273 DKHLLTDVLKNQLGFDGFVVSD-------WNAHKFVEGCDLEQCAQAINAGV 317
>pdb|3USZ|A Chain A, Crystal Structure Of Truncated Exo-1,31,4-Beta-Glucanase
(Exop) From Pseudoalteromonas Sp. Bb1
pdb|3UT0|A Chain A, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|B Chain B, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|C Chain C, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|D Chain D, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
Length = 822
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 84/172 (48%), Gaps = 18/172 (10%)
Query: 12 WS--PNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRL----KVAACCKH 65
WS P V + RD RWGR E+ EDP L +YA V G+QG+ G+ A KH
Sbjct: 157 WSFAPTVAVVRDDRWGRTYESYSEDPDLVKRYAGEMVTGIQGDVGADFLKGSNRIATAKH 216
Query: 66 YTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCA 125
+ D GVDR N + ++ L D ++ + + + +G V SVM S+N NGK
Sbjct: 217 FVG-DGGTERGVDR--GNTLIDEKGLRDIHSAGYFSAINQG-VQSVMASFNSWNGKRVHG 272
Query: 126 DPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPE-EAAADAIKAGV 176
D +L + + Q DG++VSD +N + + E A AI AGV
Sbjct: 273 DKHLLTDVLKNQLGFDGFVVSD-------WNAHKFVEGCDLEQCAQAINAGV 317
>pdb|2X42|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Alpha-D-Glucose
Length = 721
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 75/134 (55%), Gaps = 9/134 (6%)
Query: 13 SPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLD 72
+P +NI R+P GR E EDPVL+G+ A+S+V+G+Q V AC KH+ A
Sbjct: 117 APAMNIHRNPLCGRNFEYYSEDPVLSGEMASSFVKGVQSQG-----VGACIKHFVA---- 167
Query: 73 NWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKN 132
N +R + VS++ L + Y F+ V + K SVM +YN++NGK + +LK
Sbjct: 168 NNQETNRMVVDTIVSERALREIYLRGFEIAVKKSKPWSVMSAYNKLNGKYCSQNEWLLKK 227
Query: 133 TIHGQWRLDGYIVS 146
+ +W +G+++S
Sbjct: 228 VLREEWGFEGFVMS 241
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 87/318 (27%), Positives = 131/318 (41%), Gaps = 76/318 (23%)
Query: 217 ARQADATVLVMGLDQSIEAEFIDR----AGLLLPGRQQELVSRVAKA--SRGPVVLVLM- 269
A++ D V+V+ I E DR L + +L+ V++ +G V+VL+
Sbjct: 442 AKKNDVAVIVIS---RISGEGYDRKPVKGDFYLSDDETDLIKTVSREFHEQGKKVIVLLN 498
Query: 270 CGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRL 329
G PV+V ++ + IL V GQ G +ADVL GR NP GKLP T +P+DY S +
Sbjct: 499 IGSPVEVVSWRD--LVDGILLVWQAGQETGRIVADVLTGRINPSGKLPTT-FPRDY-SDV 554
Query: 330 PMTDMRMRAARGYPGRT----------------YRFYKGPVVFP---FGHGMSYTTFAHT 370
P + +PG YR+Y V P FG+G+SYTTF
Sbjct: 555 P--------SWTFPGEPKDNPQKVVYEEDIYVGYRYYDTFGVEPAYEFGYGLSYTTFE-- 604
Query: 371 LSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTL 430
Y+ N + +RV + I+NTG AG
Sbjct: 605 ----------------YSDLNVSFDGETLRVQYR-------------IENTGGRAGKEVS 635
Query: 431 LVFAKPPAGNW-SPNKQLIGFKKVH-VTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGE 488
V+ K P G P ++L F K + G + V L+I V S + + + GE
Sbjct: 636 QVYIKAPKGKIDKPFQELKAFHKTRLLNPGESEEVVLEIPVRDLASFNGEEWV--VEAGE 693
Query: 489 HSLHIGDLKHSISLQANL 506
+ + +G +I L+
Sbjct: 694 YEVRVGASSRNIKLKGTF 711
>pdb|3ZYZ|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
Resolution.
pdb|3ZZ1|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
Resolution
Length = 713
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 81/305 (26%), Positives = 130/305 (42%), Gaps = 30/305 (9%)
Query: 216 AARQADATVLVMGLDQ-----SIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMC 270
AAR D ++ + D ++E DR L LV VA A+ V++V+
Sbjct: 424 AARGKDVAIVFITADSGEGYITVEGNAGDRNNLDPWHNGNALVQAVAGANSN-VIVVVHS 482
Query: 271 GGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTW--YPQDYVSR 328
G + + P++ A++W G P Q G A+ DVL+G +P GKL T P DY +R
Sbjct: 483 VGAIILEQILALPQVKAVVWAGLPSQESGNALVDVLWGDVSPSGKLVYTIAKSPNDYNTR 542
Query: 329 LPMTDMRMRAARGYPGRTYRFYKGPVVFP---FGHGMSYTTFAHT-LSKAPNQFSVPIAT 384
+ ++ + G Y+ + + P FG+G+SYT F ++ LS S P
Sbjct: 543 I-VSGGSDSFSEGL-FIDYKHFDDANITPRYEFGYGLSYTKFNYSRLSVLSTAKSGPATG 600
Query: 385 SLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTL-LVFAKPPAGNWSP 443
++ + + N V VDI N+G + G L P + +P
Sbjct: 601 AVVPGGPSDLFQNVATVT-------------VDIANSGQVTGAEVAQLYITYPSSAPRTP 647
Query: 444 NKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRR-IPMGEHSLHIGDLKHSISL 502
KQL GF K+++T G + +I + LS D + +P G + +G I L
Sbjct: 648 PKQLRGFAKLNLTPGQSGTATFNIR-RRDLSYWDTASQKWVVPSGSFGISVGASSRDIRL 706
Query: 503 QANLE 507
+ L
Sbjct: 707 TSTLS 711
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 69/151 (45%), Gaps = 17/151 (11%)
Query: 20 RDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDR 79
+ P+ GR E G DP LTG + G+Q + V A KHY + N ++R
Sbjct: 119 KTPQGGRNWEGFGVDPYLTGIAMGQTINGIQ-----SVGVQATAKHY----ILNEQELNR 169
Query: 80 YHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWR 139
++ + L + Y PF A V+ VASVMCSYN+VN C D L+ + Q
Sbjct: 170 ETISSNPDDRTLHELYTWPF-ADAVQANVASVMCSYNKVNTTWACEDQYTLQTVLKDQLG 228
Query: 140 LDGYIVSDCDSVGVLYNTQHYTRTPEEAAAD 170
GY+++D +N QH T + D
Sbjct: 229 FPGYVMTD-------WNAQHTTVQSANSGLD 252
>pdb|4I8D|A Chain A, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
Trichoderma Reesei
pdb|4I8D|B Chain B, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
Trichoderma Reesei
Length = 714
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 81/305 (26%), Positives = 130/305 (42%), Gaps = 30/305 (9%)
Query: 216 AARQADATVLVMGLDQ-----SIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMC 270
AAR D ++ + D ++E DR L LV VA A+ V++V+
Sbjct: 425 AARGKDVAIVFITADSGEGYITVEGNAGDRNNLDPWHNGNALVQAVAGANSN-VIVVVHS 483
Query: 271 GGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTW--YPQDYVSR 328
G + + P++ A++W G P Q G A+ DVL+G +P GKL T P DY +R
Sbjct: 484 VGAIILEQILALPQVKAVVWAGLPSQESGNALVDVLWGDVSPSGKLVYTIAKSPNDYNTR 543
Query: 329 LPMTDMRMRAARGYPGRTYRFYKGPVVFP---FGHGMSYTTFAHT-LSKAPNQFSVPIAT 384
+ ++ + G Y+ + + P FG+G+SYT F ++ LS S P
Sbjct: 544 I-VSGGSDSFSEGL-FIDYKHFDDANITPRYEFGYGLSYTKFNYSRLSVLSTAKSGPATG 601
Query: 385 SLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTL-LVFAKPPAGNWSP 443
++ + + N V VDI N+G + G L P + +P
Sbjct: 602 AVVPGGPSDLFQNVATVT-------------VDIANSGQVTGAEVAQLYITYPSSAPRTP 648
Query: 444 NKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRR-IPMGEHSLHIGDLKHSISL 502
KQL GF K+++T G + +I + LS D + +P G + +G I L
Sbjct: 649 PKQLRGFAKLNLTPGQSGTATFNIR-RRDLSYWDTASQKWVVPSGSFGISVGASSRDIRL 707
Query: 503 QANLE 507
+ L
Sbjct: 708 TSTLS 712
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 69/151 (45%), Gaps = 17/151 (11%)
Query: 20 RDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDR 79
+ P+ GR E G DP LTG + G+Q + V A KHY + N ++R
Sbjct: 120 KTPQGGRNWEGFGVDPYLTGIAMGQTINGIQ-----SVGVQATAKHY----ILNEQELNR 170
Query: 80 YHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWR 139
++ + L + Y PF A V+ VASVMCSYN+VN C D L+ + Q
Sbjct: 171 ETISSNPDDRTLHELYTWPF-ADAVQANVASVMCSYNKVNTTWACEDQYTLQTVLKDQLG 229
Query: 140 LDGYIVSDCDSVGVLYNTQHYTRTPEEAAAD 170
GY+++D +N QH T + D
Sbjct: 230 FPGYVMTD-------WNAQHTTVQSANSGLD 253
>pdb|1EX1|A Chain A, Beta-D-Glucan Exohydrolase From Barley
pdb|1IEX|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
4i,4iii,4v-S-Trithiocellohexaose
pdb|1IEW|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
2-Deoxy-2-Fluoro-Alpha-D-Glucoside
pdb|1IEV|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Cyclohexitol
pdb|1IEQ|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1
pdb|1J8V|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With 4'-Nitrophenyl
3i-Thiolaminaritrioside
Length = 605
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 77/156 (49%), Gaps = 17/156 (10%)
Query: 8 GLTY-WSPNVNIFRDPRWGRGQETPGED-----------PVLTGKYAASYVRGLQGNTGS 55
G+ Y ++P + + RDPRWGR E+ ED P L G + G+ G
Sbjct: 139 GIQYAFAPCIAVCRDPRWGRCYESYSEDRRIVQSMTELIPGLQGDVPKDFTSGMPFVAGK 198
Query: 56 RLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSY 115
KVAAC KH+ D +G++ N ++++ L + + +K + +G V++VM SY
Sbjct: 199 N-KVAACAKHFVG-DGGTVDGINEN--NTIINREGLMNIHMPAYKNAMDKG-VSTVMISY 253
Query: 116 NQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSV 151
+ NG A+ D++ + + G+++SD + +
Sbjct: 254 SSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWEGI 289
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Query: 267 VLMCGGPVDVS--FAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQD 324
VL+ G PV V A +D + A L PG G + D LFG G+LP TW+
Sbjct: 521 VLISGRPVVVQPLLAASDALVAAWL----PGSEG-QGVTDALFGDFGFTGRLPRTWFKS- 574
Query: 325 YVSRLPM 331
V +LPM
Sbjct: 575 -VDQLPM 580
>pdb|1LQ2|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X38|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X39|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
Length = 602
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 77/156 (49%), Gaps = 17/156 (10%)
Query: 8 GLTY-WSPNVNIFRDPRWGRGQETPGED-----------PVLTGKYAASYVRGLQGNTGS 55
G+ Y ++P + + RDPRWGR E+ ED P L G + G+ G
Sbjct: 139 GIQYAFAPCIAVCRDPRWGRCYESYSEDRRIVQSMTELIPGLQGDVPKDFTSGMPFVAGK 198
Query: 56 RLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSY 115
KVAAC KH+ D +G++ N ++++ L + + +K + +G V++VM SY
Sbjct: 199 N-KVAACAKHFVG-DGGTVDGINEN--NTIINREGLMNIHMPAYKNAMDKG-VSTVMISY 253
Query: 116 NQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSV 151
+ NG A+ D++ + + G+++SD + +
Sbjct: 254 SSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWEGI 289
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Query: 267 VLMCGGPVDVS--FAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQD 324
VL+ G PV V A +D + A L PG G + D LFG G+LP TW+
Sbjct: 521 VLISGRPVVVQPLLAASDALVAAWL----PGSEG-QGVTDALFGDFGFTGRLPRTWFKS- 574
Query: 325 YVSRLPM 331
V +LPM
Sbjct: 575 -VDQLPM 580
>pdb|3TEV|A Chain A, The Crystal Structure Of Glycosyl Hydrolase From
Deinococcus Radiodurans R1
pdb|3TEV|B Chain B, The Crystal Structure Of Glycosyl Hydrolase From
Deinococcus Radiodurans R1
Length = 351
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 13/132 (9%)
Query: 48 GLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQ--DLEDTYNVPFKACVVE 105
L G+T R VA C KH+ + + D + RVSK +L+ PF+A + E
Sbjct: 164 ALAGHT--REGVAPCAKHFPGHGDTHQ---DSHLALPRVSKSRAELDAGELAPFRALLPE 218
Query: 106 G-KVASVMCSYNQVNGK-PTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRT 163
+ + Y+ ++ + P P IL + +W DG IV+ DS G +Y R
Sbjct: 219 TPAIXTAHIVYDALDAEHPATLSPRILTGLLREEWGYDGVIVT--DSXGXQAIDANYGRG 276
Query: 164 PEEAAADAIKAG 175
EAA A++AG
Sbjct: 277 --EAAVRALRAG 286
>pdb|3EOJ|A Chain A, Fmo Protein From Prosthecochloris Aestuarii 2k At 1.3a
Resolution
Length = 366
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 482 RRIPMGEHSLHIGDLKHSISLQANL 506
RRI +GE SL +GD HS S + ++
Sbjct: 94 RRIAVGEGSLSVGDFSHSFSFEGSV 118
>pdb|3P11|A Chain A, Anti-EgfrHER3 FAB DL11 IN COMPLEX WITH DOMAINS I-Iii Of
The Her3 Extracellular Region
Length = 522
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 12/71 (16%)
Query: 47 RGLQGNTGSRLKVAA---CCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACV 103
R L+ + R+ ++A C H++ NW V R +++ L+ +N P + CV
Sbjct: 425 RSLKEISAGRIYISANRQLCYHHSL----NWTKVLR-----GPTEERLDIKHNRPRRDCV 475
Query: 104 VEGKVASVMCS 114
EGKV +CS
Sbjct: 476 AEGKVCDPLCS 486
>pdb|1M6B|A Chain A, Structure Of The Her3 (Erbb3) Extracellular Domain
pdb|1M6B|B Chain B, Structure Of The Her3 (Erbb3) Extracellular Domain
Length = 621
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 12/71 (16%)
Query: 47 RGLQGNTGSRLKVAA---CCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACV 103
R L+ + R+ ++A C H++ NW V R +++ L+ +N P + CV
Sbjct: 425 RSLKEISAGRIYISANRQLCYHHSL----NWTKVLR-----GPTEERLDIKHNRPRRDCV 475
Query: 104 VEGKVASVMCS 114
EGKV +CS
Sbjct: 476 AEGKVCDPLCS 486
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,589,029
Number of Sequences: 62578
Number of extensions: 728208
Number of successful extensions: 1422
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1366
Number of HSP's gapped (non-prelim): 28
length of query: 511
length of database: 14,973,337
effective HSP length: 103
effective length of query: 408
effective length of database: 8,527,803
effective search space: 3479343624
effective search space used: 3479343624
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)