Query 010408
Match_columns 511
No_of_seqs 274 out of 1546
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 00:11:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010408.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010408hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03080 Probable beta-xylosid 100.0 4E-121 9E-126 1022.5 43.7 499 2-504 144-779 (779)
2 PRK15098 beta-D-glucoside gluc 100.0 3E-112 7E-117 953.6 42.6 456 8-501 150-758 (765)
3 PF00933 Glyco_hydro_3: Glycos 100.0 5E-43 1.1E-47 355.6 11.1 156 8-175 102-258 (299)
4 COG1472 BglX Beta-glucosidase- 100.0 2.5E-42 5.4E-47 360.3 11.2 157 8-175 113-273 (397)
5 PRK05337 beta-hexosaminidase; 100.0 5E-39 1.1E-43 329.4 13.6 157 8-176 114-274 (337)
6 PF01915 Glyco_hydro_3_C: Glyc 100.0 5.1E-32 1.1E-36 264.5 10.1 175 177-366 42-227 (227)
7 PF14310 Fn3-like: Fibronectin 99.8 1.2E-21 2.5E-26 156.5 6.8 69 428-497 1-71 (71)
8 PF07705 CARDB: CARDB; InterP 96.6 0.0079 1.7E-07 50.2 7.4 61 411-494 20-82 (101)
9 PF12690 BsuPI: Intracellular 96.1 0.045 9.7E-07 44.8 8.5 67 412-492 2-81 (82)
10 PF10633 NPCBM_assoc: NPCBM-as 95.1 0.11 2.5E-06 41.7 7.6 66 411-494 6-74 (78)
11 TIGR00192 urease_beta urease, 92.2 0.26 5.7E-06 41.4 4.7 51 412-466 20-82 (101)
12 PF00699 Urease_beta: Urease b 92.0 0.25 5.5E-06 41.4 4.4 51 412-466 19-81 (100)
13 PF14874 PapD-like: Flagellar- 91.0 2.3 4.9E-05 35.7 9.5 60 411-476 21-80 (102)
14 PRK13203 ureB urease subunit b 88.9 0.75 1.6E-05 38.8 4.7 51 412-466 20-82 (102)
15 cd00407 Urease_beta Urease bet 88.7 0.83 1.8E-05 38.5 4.8 51 412-466 20-82 (101)
16 COG1470 Predicted membrane pro 87.7 1.7 3.6E-05 46.4 7.3 74 411-497 285-360 (513)
17 PRK13201 ureB urease subunit b 85.6 1.5 3.2E-05 38.8 4.7 51 412-466 20-82 (136)
18 PRK13202 ureB urease subunit b 85.2 1.9 4.1E-05 36.5 5.0 50 413-466 22-83 (104)
19 PF05506 DUF756: Domain of unk 84.8 9.2 0.0002 31.4 9.1 46 413-469 21-67 (89)
20 PRK13205 ureB urease subunit b 83.7 1.9 4.1E-05 39.0 4.7 51 412-466 20-82 (162)
21 COG1470 Predicted membrane pro 83.0 7.7 0.00017 41.5 9.5 81 411-507 398-485 (513)
22 PF00345 PapD_N: Pili and flag 80.2 5 0.00011 34.8 6.2 54 413-469 17-73 (122)
23 PF07610 DUF1573: Protein of u 79.4 4.6 0.0001 28.9 4.6 43 415-466 1-44 (45)
24 PF06280 DUF1034: Fn3-like dom 78.2 16 0.00036 31.2 8.7 59 411-469 9-80 (112)
25 PRK13204 ureB urease subunit b 78.1 4.3 9.2E-05 36.8 5.0 51 412-466 43-105 (159)
26 PF13473 Cupredoxin_1: Cupredo 77.3 7.2 0.00016 32.9 6.1 39 413-467 44-82 (104)
27 PRK13198 ureB urease subunit b 76.2 5.2 0.00011 36.3 5.0 51 412-466 48-110 (158)
28 PF06510 DUF1102: Protein of u 73.9 20 0.00044 32.4 8.1 54 411-469 69-124 (146)
29 PF06030 DUF916: Bacterial pro 72.6 14 0.00031 32.4 6.8 57 411-469 28-103 (121)
30 PRK13192 bifunctional urease s 70.5 7.3 0.00016 37.1 4.7 51 412-466 129-191 (208)
31 PF04744 Monooxygenase_B: Mono 70.4 9.3 0.0002 39.7 5.9 53 411-468 264-334 (381)
32 PF00927 Transglut_C: Transglu 69.1 9.9 0.00021 32.2 5.0 58 411-469 16-76 (107)
33 PF14796 AP3B1_C: Clathrin-ada 68.7 17 0.00036 33.1 6.5 54 411-469 86-140 (145)
34 PF07385 DUF1498: Protein of u 67.7 5.8 0.00013 38.4 3.5 56 417-478 111-177 (225)
35 TIGR02695 azurin azurin. Azuri 66.8 14 0.00031 32.6 5.5 52 413-468 26-98 (125)
36 PF09624 DUF2393: Protein of u 66.5 15 0.00033 33.1 6.0 59 411-469 63-133 (149)
37 PRK13986 urease subunit alpha; 65.4 11 0.00023 36.4 4.8 51 412-466 125-187 (225)
38 PF14016 DUF4232: Protein of u 63.0 24 0.00052 31.1 6.5 57 411-469 19-82 (131)
39 COG0486 ThdF Predicted GTPase 59.3 59 0.0013 35.1 9.5 47 102-150 60-111 (454)
40 cd03708 GTPBP_III Domain III o 58.2 69 0.0015 25.7 7.9 77 411-494 5-82 (87)
41 PF06858 NOG1: Nucleolar GTP-b 55.7 33 0.00071 26.2 5.0 24 246-269 31-55 (58)
42 COG2003 RadC DNA repair protei 52.0 27 0.00058 34.1 5.1 100 33-151 104-210 (224)
43 COG1160 Predicted GTPases [Gen 50.8 44 0.00096 35.9 6.9 46 211-269 75-120 (444)
44 TIGR01759 MalateDH-SF1 malate 50.5 12 0.00026 38.6 2.7 56 215-276 75-134 (323)
45 PF08530 PepX_C: X-Pro dipepti 47.2 82 0.0018 30.1 7.8 56 411-469 97-162 (218)
46 PF05753 TRAP_beta: Translocon 46.7 1E+02 0.0022 29.2 8.0 83 411-498 39-128 (181)
47 PRK13211 N-acetylglucosamine-b 46.4 81 0.0018 34.4 8.2 59 411-494 328-386 (478)
48 TIGR01756 LDH_protist lactate 46.1 14 0.00031 37.9 2.4 56 215-276 56-115 (313)
49 TIGR03079 CH4_NH3mon_ox_B meth 42.8 57 0.0012 34.1 6.0 54 411-469 283-354 (399)
50 PF06205 GT36_AF: Glycosyltran 42.2 18 0.0004 29.9 2.0 27 441-469 58-84 (90)
51 PRK05442 malate dehydrogenase; 42.1 16 0.00035 37.8 2.0 56 215-276 76-135 (326)
52 PRK13556 azoreductase; Provisi 42.1 73 0.0016 30.4 6.5 38 210-258 80-117 (208)
53 PLN02424 ketopantoate hydroxym 41.8 1.7E+02 0.0038 30.3 9.4 122 98-231 26-162 (332)
54 PRK09918 putative fimbrial cha 41.7 95 0.0021 30.3 7.3 52 413-468 41-93 (230)
55 COG0832 UreB Urea amidohydrola 40.9 25 0.00053 29.7 2.5 52 412-467 20-83 (106)
56 PF13653 GDPD_2: Glycerophosph 40.6 24 0.00051 23.2 1.9 17 98-115 12-28 (30)
57 PRK13555 azoreductase; Provisi 40.2 72 0.0016 30.7 6.1 39 209-258 79-117 (208)
58 PF00703 Glyco_hydro_2: Glycos 40.1 1.2E+02 0.0025 24.8 6.8 63 411-478 19-81 (110)
59 TIGR01757 Malate-DH_plant mala 39.3 16 0.00035 38.8 1.5 56 215-276 116-175 (387)
60 TIGR03352 VI_chp_3 type VI sec 38.8 63 0.0014 29.3 5.2 24 446-469 81-104 (146)
61 PRK15249 fimbrial chaperone pr 38.6 72 0.0016 31.7 6.0 54 413-468 45-103 (253)
62 PF10087 DUF2325: Uncharacteri 38.0 69 0.0015 26.6 5.0 40 213-267 42-81 (97)
63 PRK09926 putative chaperone pr 37.1 81 0.0018 31.2 6.1 55 413-469 42-100 (246)
64 PRK15295 fimbrial assembly cha 36.0 1.4E+02 0.003 29.2 7.4 55 413-469 36-91 (226)
65 cd00704 MDH Malate dehydrogena 35.1 29 0.00063 35.8 2.7 56 215-276 72-131 (323)
66 cd01338 MDH_choloroplast_like 34.3 33 0.00073 35.4 2.9 56 215-276 74-133 (322)
67 TIGR03096 nitroso_cyanin nitro 34.1 1.2E+02 0.0026 27.3 6.0 16 454-469 95-110 (135)
68 PLN02303 urease 33.7 55 0.0012 38.0 4.7 50 413-466 151-212 (837)
69 PLN02591 tryptophan synthase 33.6 1.9E+02 0.0041 28.8 8.0 79 211-306 145-225 (250)
70 PRK15218 fimbrial chaperone pr 33.1 1.5E+02 0.0033 28.9 7.2 55 413-469 35-93 (226)
71 cd01336 MDH_cytoplasmic_cytoso 33.1 32 0.0007 35.5 2.6 56 215-276 74-133 (325)
72 cd00300 LDH_like L-lactate deh 33.0 26 0.00057 35.6 1.9 57 215-276 62-120 (300)
73 PF11611 DUF4352: Domain of un 32.9 72 0.0016 27.1 4.5 58 411-468 37-100 (123)
74 PRK05086 malate dehydrogenase; 32.8 33 0.00072 35.2 2.6 56 215-276 65-123 (312)
75 PRK00170 azoreductase; Reviewe 32.4 1.1E+02 0.0023 28.7 5.9 38 209-257 76-113 (201)
76 PRK15299 fimbrial chaperone pr 32.1 1.2E+02 0.0026 29.6 6.3 54 413-468 39-94 (227)
77 PLN00112 malate dehydrogenase 31.6 25 0.00054 38.0 1.5 56 215-276 172-231 (444)
78 TIGR01758 MDH_euk_cyt malate d 31.4 35 0.00075 35.3 2.5 56 215-276 71-130 (324)
79 PLN00135 malate dehydrogenase 30.8 28 0.00061 35.7 1.7 56 215-276 54-113 (309)
80 cd01857 HSR1_MMR1 HSR1/MMR1. 30.4 1.6E+02 0.0035 25.8 6.4 18 211-228 3-20 (141)
81 cd05290 LDH_3 A subgroup of L- 30.3 42 0.00092 34.4 2.9 57 215-276 64-124 (307)
82 PF02450 LCAT: Lecithin:choles 29.5 53 0.0012 34.7 3.6 60 250-309 107-174 (389)
83 PF00056 Ldh_1_N: lactate/mala 29.5 9.9 0.00021 34.2 -1.7 54 216-276 66-123 (141)
84 TIGR00608 radc DNA repair prot 29.0 2E+02 0.0043 28.0 7.2 90 34-142 99-195 (218)
85 PF07495 Y_Y_Y: Y_Y_Y domain; 28.9 82 0.0018 23.6 3.7 12 484-495 36-47 (66)
86 COG0039 Mdh Malate/lactate deh 28.7 44 0.00095 34.4 2.6 57 215-276 65-123 (313)
87 PF11906 DUF3426: Protein of u 28.5 2.2E+02 0.0047 25.4 7.0 59 411-469 69-136 (149)
88 COG0084 TatD Mg-dependent DNas 28.4 2.4E+02 0.0052 28.2 7.8 101 207-317 73-181 (256)
89 cd03707 EFTU_III Domain III of 28.3 3.1E+02 0.0068 22.0 8.8 67 411-484 5-78 (90)
90 PF11071 DUF2872: Protein of u 28.0 1.2E+02 0.0025 27.2 4.8 17 214-230 67-83 (141)
91 PF11614 FixG_C: IG-like fold 27.6 1.7E+02 0.0037 25.0 5.9 49 414-469 35-84 (118)
92 PF01926 MMR_HSR1: 50S ribosom 27.0 98 0.0021 25.9 4.2 46 210-269 70-115 (116)
93 TIGR03566 FMN_reduc_MsuE FMN r 26.9 1.6E+02 0.0035 27.0 6.0 54 208-272 57-112 (174)
94 TIGR01451 B_ant_repeat conserv 26.6 1E+02 0.0022 22.7 3.6 22 411-433 13-34 (53)
95 PRK15246 fimbrial assembly cha 26.5 1.9E+02 0.004 28.5 6.5 54 413-468 27-84 (233)
96 PF01345 DUF11: Domain of unkn 25.9 91 0.002 24.4 3.5 18 411-428 42-59 (76)
97 PF13598 DUF4139: Domain of un 25.1 1.9E+02 0.004 29.4 6.6 57 411-469 243-313 (317)
98 cd09030 DUF1425 Putative perip 24.9 3.2E+02 0.007 22.8 6.9 57 411-469 33-90 (101)
99 TIGR03646 YtoQ_fam YtoQ family 24.9 1.4E+02 0.0031 26.7 4.8 17 214-230 70-86 (144)
100 PF07233 DUF1425: Protein of u 24.8 4E+02 0.0087 22.0 8.2 57 411-469 25-82 (94)
101 PRK15253 putative fimbrial ass 24.7 2.6E+02 0.0056 27.7 7.2 54 413-468 50-107 (242)
102 cd01337 MDH_glyoxysomal_mitoch 24.7 52 0.0011 33.8 2.4 55 215-276 64-122 (310)
103 COG1182 AcpD Acyl carrier prot 24.6 2.4E+02 0.0051 27.2 6.5 37 212-259 80-116 (202)
104 TIGR01763 MalateDH_bact malate 24.6 47 0.001 33.9 2.1 53 217-276 67-123 (305)
105 TIGR02231 conserved hypothetic 24.4 2E+02 0.0044 31.6 7.1 57 411-469 443-516 (525)
106 TIGR01772 MDH_euk_gproteo mala 24.2 66 0.0014 33.0 3.0 56 215-276 63-121 (312)
107 KOG0742 AAA+-type ATPase [Post 24.0 75 0.0016 34.0 3.3 69 240-309 459-530 (630)
108 PF00009 GTP_EFTU: Elongation 24.0 2.7E+02 0.0058 25.7 7.0 47 210-269 84-130 (188)
109 PLN02602 lactate dehydrogenase 23.9 46 0.001 34.8 1.9 54 216-276 102-159 (350)
110 PTZ00325 malate dehydrogenase; 23.8 51 0.0011 34.1 2.1 57 214-276 71-130 (321)
111 PF02102 Peptidase_M35: Deuter 23.7 26 0.00057 36.7 0.0 64 411-474 39-121 (359)
112 TIGR00222 panB 3-methyl-2-oxob 23.6 5.9E+02 0.013 25.5 9.5 66 98-175 6-73 (263)
113 PRK01355 azoreductase; Reviewe 23.2 2.5E+02 0.0055 26.4 6.7 39 208-257 66-104 (199)
114 COG1361 S-layer domain [Cell e 23.2 1.7E+02 0.0037 31.9 6.2 58 411-469 168-226 (500)
115 TIGR03396 PC_PLC phospholipase 23.2 3.6E+02 0.0078 31.0 8.8 47 413-469 606-652 (690)
116 PRK00024 hypothetical protein; 22.9 2.5E+02 0.0053 27.4 6.6 90 34-142 105-201 (224)
117 PRK15224 pili assembly chapero 22.9 2.8E+02 0.0062 27.3 7.0 50 413-469 45-98 (237)
118 PF12790 T6SS-SciN: Type VI se 22.3 94 0.002 27.8 3.3 24 446-469 76-99 (142)
119 PF09544 DUF2381: Protein of u 22.2 4.7E+02 0.01 26.5 8.7 57 411-469 203-260 (289)
120 cd05294 LDH-like_MDH_nadp A la 22.1 75 0.0016 32.5 2.9 54 216-276 69-126 (309)
121 PF14079 DUF4260: Domain of un 21.7 45 0.00098 29.0 1.0 17 357-373 94-111 (113)
122 PRK15452 putative protease; Pr 21.5 76 0.0016 34.4 2.9 24 130-153 78-103 (443)
123 PF08853 DUF1823: Domain of un 21.2 38 0.00082 29.3 0.5 15 132-146 79-93 (116)
124 PF06165 Glyco_transf_36: Glyc 21.2 1.4E+02 0.0029 25.6 3.9 58 355-436 31-89 (110)
125 PRK09739 hypothetical protein; 20.6 2.4E+02 0.0052 26.5 6.0 56 208-274 68-133 (199)
126 PF09587 PGA_cap: Bacterial ca 20.6 3.1E+02 0.0067 26.8 6.9 72 210-296 173-245 (250)
127 PRK15233 putative fimbrial cha 20.2 3.4E+02 0.0074 26.9 7.0 49 413-469 57-110 (246)
No 1
>PLN03080 Probable beta-xylosidase; Provisional
Probab=100.00 E-value=4.1e-121 Score=1022.51 Aligned_cols=499 Identities=51% Similarity=0.989 Sum_probs=418.1
Q ss_pred CCccccceeeecccccccCCCCCcccccccCCCHHHHHHHHHHHHHHHhcCC---------CCCCcEEEeecccccCCcc
Q 010408 2 YNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNT---------GSRLKVAACCKHYTAYDLD 72 (511)
Q Consensus 2 ~~~~~~Gi~~~aP~vdi~r~Pr~gR~~EsfgEDP~l~~~~a~a~v~G~Q~~~---------~~~~~V~a~~KHF~g~g~~ 72 (511)
++.+.+|+++|||++||+|||||||++|||||||+|+++||+|+|+|||+.+ .++.+|+||+||||||+++
T Consensus 144 g~~~~~G~~~~aP~vdi~rdPrwGR~~EtfGEDP~lv~~~a~a~V~GlQ~~~~~~~~~~~~~~~~~V~a~~KHF~g~~~e 223 (779)
T PLN03080 144 YNAGQAGLTFWAPNINIFRDPRWGRGQETPGEDPAVASAYSVEFVKGFQGGKWKKVRDDGEDGKLMLSACCKHYTAYDLE 223 (779)
T ss_pred ccccccCcceeecccccccCCCcCccccCcCCCHHHHHHHHHHHHHHhcCCCcccccccccCCCceEEEECCeeeCCCcc
Confidence 3445568998999999999999999999999999999999999999999842 2344699999999999998
Q ss_pred CCCCCCccccccccCHhHHHhhcCHHHHHHHHhCCcceeEeeccCCCCccCccChHHHHHhhhhhcCCCcEEECCCCccc
Q 010408 73 NWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVG 152 (511)
Q Consensus 73 ~~~~~~r~~~~~~~s~~~L~e~~L~PF~~ai~~g~~~sVM~syn~vng~pa~~s~~ll~~lLR~e~gF~G~VvSD~~~~~ 152 (511)
++++.+|..+++.+++++|+|+||+||++||++|.+.+||||||++||+|||+|++||++ ||+||||+|+|||||++|.
T Consensus 224 ~~~~~~r~~~~~~v~~~~L~e~yl~PF~~ai~~g~~~~VM~sYn~vnG~Pa~~s~~lL~~-LR~ewGF~G~VvSD~~a~~ 302 (779)
T PLN03080 224 KWGNFSRYTFNAVVTEQDMEDTYQPPFKSCIQEGKASCLMCSYNQVNGVPACARKDLLQK-ARDEWGFQGYITSDCDAVA 302 (779)
T ss_pred ccCCccccCccCccCHHHHHhhhhHHHHHHHHhcCCeEEEeCCcCcCCccccCCHHHHHH-HHHHhCcCCeEecchHHHH
Confidence 766667888889999999999999999999999988899999999999999999999986 9999999999999999999
Q ss_pred ccccCCCCCCCHHHHHHHchhcc---------------------------------------------------------
Q 010408 153 VLYNTQHYTRTPEEAAADAIKAG--------------------------------------------------------- 175 (511)
Q Consensus 153 ~~~~~~~~~~~~~~a~~~ai~AG--------------------------------------------------------- 175 (511)
.+...|++..+.++++++||+||
T Consensus 303 ~~~~~~~~~~~~~ea~~~Al~AG~Dl~~~~~~~~~l~~av~~G~i~e~~ID~av~RiL~~k~rlGlfd~~~~~~~~~~~~ 382 (779)
T PLN03080 303 TIFEYQTYTKSPEDAVADVLKAGMDINCGSYMLRHTQSAIEKGKVQEEDIDRALFNLFSVQLRLGLFDGDPRNGWYGKLG 382 (779)
T ss_pred HhhhcccccCCHHHHHHHHHHcCCCcccCchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcCCCccccccccc
Confidence 98877888778899999999999
Q ss_pred ------------------------------------------------------------ccCCccchhhhhhhhe-eee
Q 010408 176 ------------------------------------------------------------VACGYTTPLQGISRYA-KTI 194 (511)
Q Consensus 176 ------------------------------------------------------------~~~~~~~~l~~~~~~~-~~~ 194 (511)
.|++.++|+++|+++. .+.
T Consensus 383 ~~~v~~~~h~~lA~eaA~~siVLLKN~~~~LPL~~~~~~~IaViGp~A~~~~~~~g~~~~~~~~~~t~~~gl~~~~~~~~ 462 (779)
T PLN03080 383 PNNVCTKEHRELALEAARQGIVLLKNDKKFLPLNKSEVSSLAIIGPMANDPYNLGGDYTGVPCQPTTLFKGLQAYVKKTS 462 (779)
T ss_pred ccccCCHHHHHHHHHHHHhCEEEEecCCCCCCCCCCCCCEEEEECCCCCCcCcCCCCCCCCCCCCCCHHHHHHHHhhcce
Confidence 0112234444544432 234
Q ss_pred ccCCccccccCCcchHHHHHHHHhhCCEEEEEeccCCCCccccCCCCCCCCChhHHHHHHHHHHhCCCCEEEEEeCCceE
Q 010408 195 HQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPV 274 (511)
Q Consensus 195 ~~~G~~~~~~~~~~~~~~a~~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~va~~~~kpvVvVl~~g~P~ 274 (511)
|..||....+.....+++|+++|++||+|||++|.+...++|+.||.+|.||+.|.+||++|++++++|||||+++|+|+
T Consensus 463 y~~g~~~~~~~~~~~~~~A~~~A~~aD~vIv~~G~~~~~e~E~~Dr~~l~Lp~~Q~~LI~~va~~~~~pvIvVl~~g~Pv 542 (779)
T PLN03080 463 FAAGCKDVSCNSDTGFGEAIAIAKRADFVVVVAGLDLSQETEDHDRVSLLLPGKQMDLISSVASVSKKPVVLVLTGGGPV 542 (779)
T ss_pred eccCccccccCchhhHHHHHHHhccCCEEEEEeCCCccccccCCCcccccCCccHHHHHHHHHhhcCCCEEEEEeCCcee
Confidence 55555443333345688999999999999999999999999999999999999999999999987777999999999999
Q ss_pred EccCccCCCCccEEEEecCCChhHHHHHHHHHcCCCCCCeecCceecccccCCCCCCccccccc--cCCCCCCcccccCC
Q 010408 275 DVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRA--ARGYPGRTYRFYKG 352 (511)
Q Consensus 275 ~l~~~~~~~~v~Ail~a~~pG~e~g~AiAdVL~G~~nPsGkLPvT~~p~~~~~~~p~~~~~~~~--~~~~~~~~Yr~~~~ 352 (511)
+|+|+.+.++++|||++|||||++|+|+||||||++|||||||+||||+++ +++|++++++++ ..+|++++||||+.
T Consensus 543 ~l~~~~~~~~v~AIl~~~ypGqegG~AiAdvLfG~vnPsGkLPvT~~p~~~-~~~P~~~~~~~~~~~~~~pg~~Yr~~~~ 621 (779)
T PLN03080 543 DVSFAKQDPRIASILWIGYPGEVGGQALAEIIFGDYNPGGRLPMTWYPESF-TAVPMTDMNMRADPSRGYPGRTYRFYTG 621 (779)
T ss_pred eccchhccCCCCeEEEccCCcccchhhhHHHHcCCCCCCCcCeeeeccccc-ccCCccccCcccccccCCCCCCceeCCC
Confidence 999986667899999999999999999999999999999999999989987 789988887754 35688999999999
Q ss_pred CcccccCcCCCcCCceecccccCCCcccccccccccccccccc---c---cceeecc-ccCCCceeEEEEEEEEeCCCCC
Q 010408 353 PVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTIS---S---NAIRVAH-TNCNDAMSLGLHVDIKNTGDMA 425 (511)
Q Consensus 353 ~~lypFG~GLSYTtF~ys~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~-~~~~~~~~~~v~v~V~NtG~~~ 425 (511)
+|+||||||||||||+||+++++...++...... .+...... . ...++.. ..|+.. .++|+|+|||||+++
T Consensus 622 ~p~ypFG~GLSYTtF~ys~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~VtNtG~~~ 699 (779)
T PLN03080 622 DVVYGFGYGLSYTKFSYKILSAPKKLSLSRSSVQ-DSISRKPLLQRRDELDYVQIEDIASCESL-RFNVHISVSNVGEMD 699 (779)
T ss_pred CcceeccCCCccceeEeccccccccccccccccc-cccccccccccccccccccccccccCCCc-eEEEEEEEEECCccc
Confidence 9999999999999999999975421111100000 00000000 0 0000000 112322 489999999999999
Q ss_pred cceEEEEEeeCCCCC-CCcccccccccccccCCCCeEEEEEEecCCCCeeEEeCCCCEEecCeEEEEEEeCCCceEEEEE
Q 010408 426 GTHTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQA 504 (511)
Q Consensus 426 G~evvQlY~~~~~~~-~~P~k~L~gF~kv~L~pGe~~~v~~~l~~~~~ls~~d~~~~~~~~~G~y~i~vG~ss~~~~~~~ 504 (511)
|+||||||+++|.++ .+|+||||||+||+|+|||+++|+|+|+++++|++||++++|++|+|+|+|+||.+++++++++
T Consensus 700 G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L~~Ges~~V~~~l~~~~~ls~~d~~~~~~v~~G~y~l~vG~~~~~~~~~~ 779 (779)
T PLN03080 700 GSHVVMLFSRSPPVVPGVPEKQLVGFDRVHTASGRSTETEIVVDPCKHLSVANEEGKRVLPLGDHVLMLGDLEHSLSIEI 779 (779)
T ss_pred CcEEEEEEEecCccCCCCcchhccCcEeEeeCCCCEEEEEEEeCchHHceEEcCCCcEEEeCccEEEEEeCCccceEEeC
Confidence 999999999999876 8999999999999999999999999999658999999999999999999999999999988864
No 2
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=100.00 E-value=3.1e-112 Score=953.59 Aligned_cols=456 Identities=32% Similarity=0.515 Sum_probs=386.3
Q ss_pred ceee-ecccccccCCCCCcccccccCCCHHHHHHHHHHHHHHHhcCC-CCCCcEEEeecccccCCccCCCCCCccccccc
Q 010408 8 GLTY-WSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNT-GSRLKVAACCKHYTAYDLDNWNGVDRYHFNAR 85 (511)
Q Consensus 8 Gi~~-~aP~vdi~r~Pr~gR~~EsfgEDP~l~~~~a~a~v~G~Q~~~-~~~~~V~a~~KHF~g~g~~~~~~~~r~~~~~~ 85 (511)
|||+ |||++||+|||+|||++|||||||+|+++|+.|+|+|||+++ ....||+||+|||||||.++ .+|+...+.
T Consensus 150 Gin~~laPv~Dv~r~p~~gr~~rsfgeDP~lv~~~~~a~v~GlQ~~~~~~~~gV~a~~KHFpG~g~~~---~~~~~~~~~ 226 (765)
T PRK15098 150 GLNMTWAPMVDISRDPRWGRASEGFGEDTYLTSIMGKTMVKAMQGKSPADRYSVMTSVKHFALYGAVE---GGRDYNTVD 226 (765)
T ss_pred CCCEEeeCcccccCCCCccccccCcCCCHHHHHHHHHHHHHHHcCCCCCCCCCEEEECcEEeCCCCcc---cCccCccCc
Confidence 9999 999999999999999999999999999999999999999863 22347999999999999764 356656788
Q ss_pred cCHhHHHhhcCHHHHHHHHhCCcceeEeeccCCCCccCccChHHHHHhhhhhcCCCcEEECCCCcccccccCCCCCCCHH
Q 010408 86 VSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPE 165 (511)
Q Consensus 86 ~s~~~L~e~~L~PF~~ai~~g~~~sVM~syn~vng~pa~~s~~ll~~lLR~e~gF~G~VvSD~~~~~~~~~~~~~~~~~~ 165 (511)
+++++|+|+||+||+++|++| +++||||||.+||+|||.|+++|++|||+||||+|+|||||++|..+.. |++..+..
T Consensus 227 ~~~~~l~e~~l~PF~~ai~ag-~~~VM~sy~~~~g~pa~~s~~ll~~lLR~e~GF~G~VvSD~~a~~~l~~-~~~~~~~~ 304 (765)
T PRK15098 227 MSPQRMFNDYLPPYKAGLDAG-SGGVMVALNSLNGTPATSDSWLLKDLLRDQWGFKGITVSDHGAIKELIK-HGVAADPE 304 (765)
T ss_pred CCHHHHHHHHHHHHHHHHHhC-CCEEEecccCcCCEeccCCHHHHHHHHHHhcCCCcEEEecchhHHHHHh-cccCCCHH
Confidence 999999999999999999987 9999999999999999999999999999999999999999999988764 66667788
Q ss_pred HHHHHchhcc----------------------------------------------c-----------------------
Q 010408 166 EAAADAIKAG----------------------------------------------V----------------------- 176 (511)
Q Consensus 166 ~a~~~ai~AG----------------------------------------------~----------------------- 176 (511)
+++++||+|| .
T Consensus 305 ea~~~Al~AG~Dl~m~~~~~~~~l~~av~~G~i~~~~id~av~RIL~~k~~~glf~~p~~~~~~~~~~~~~~~~~~~~~~ 384 (765)
T PRK15098 305 DAVRLALKSGIDMSMSDEYYSKYLPGLVKSGKVTMAELDDAVRHVLNVKYDMGLFNDPYSHLGPKESDPVDTNAESRLHR 384 (765)
T ss_pred HHHHHHHHcCCCcccCchhHHHHHHHHHHcCcCCHHHHHHHHHHHHHHHHHhCCCCCCccccccccccccccccCCHHHH
Confidence 8999999999 0
Q ss_pred ---------------------------------------------------cCCccchhhhhhhhe----eeeccCCccc
Q 010408 177 ---------------------------------------------------ACGYTTPLQGISRYA----KTIHQAGCFG 201 (511)
Q Consensus 177 ---------------------------------------------------~~~~~~~l~~~~~~~----~~~~~~G~~~ 201 (511)
+.+.++|++++++.. .+.|..||..
T Consensus 385 ~~a~~~a~~sivLLKN~~~~LPL~~~~~IaviG~~a~~~~~~~G~~s~~~~~~~~vt~~~gl~~~~~~~~~v~y~~G~~~ 464 (765)
T PRK15098 385 KEAREVARESLVLLKNRLETLPLKKSGTIAVVGPLADSQRDVMGSWSAAGVADQSVTVLQGIKNAVGDKAKVLYAKGANV 464 (765)
T ss_pred HHHHHHHHhcEEEEecCCCCCCCCCCCEEEEECCCcccccccCCCccccCccCCCCCHHHHHHHhhcCCceEEEeccccc
Confidence 011233333333321 2334444421
Q ss_pred ccc-------------------CCcchHHHHHHHHhhCCEEEEEeccCCCCccccCCCCCCCCChhHHHHHHHHHHhCCC
Q 010408 202 VAC-------------------NGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRG 262 (511)
Q Consensus 202 ~~~-------------------~~~~~~~~a~~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~va~~~~k 262 (511)
... .....+++|+++|++||++||++|++...++|+.||.+|.||+.|.+||++|++. +|
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~A~~aD~vIv~vg~~~~~~~E~~Dr~~l~Lp~~Q~~Li~~v~~~-~~ 543 (765)
T PRK15098 465 TDDKGIIDFLNQYEEAVKVDPRSPQAMIDEAVQAAKQADVVVAVVGEAQGMAHEASSRTDITIPQSQRDLIAALKAT-GK 543 (765)
T ss_pred ccCcccchhhhccccccccccccchhhHHHHHHHHhcCCEEEEEEcCCCCccccCCCcccccCCHHHHHHHHHHHHh-Cc
Confidence 100 0123578899999999999999999988999999999999999999999999864 67
Q ss_pred CEEEEEeCCceEEccCccCCCCccEEEEecCCChhHHHHHHHHHcCCCCCCeecCceecccccCCCCCCccccccccCCC
Q 010408 263 PVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGY 342 (511)
Q Consensus 263 pvVvVl~~g~P~~l~~~~~~~~v~Ail~a~~pG~e~g~AiAdVL~G~~nPsGkLPvT~~p~~~~~~~p~~~~~~~~~~~~ 342 (511)
|+|||+++|+|++|+|+. ++++|||++|+||+++|+|+||||||++|||||||+|| |++. +++|.+++.......|
T Consensus 544 ~vVvVl~~g~P~~l~~~~--~~v~AiL~a~~pG~e~G~AiAdvLfG~~nPsGkLPvT~-p~~~-~~~P~~~~~~~~~~~y 619 (765)
T PRK15098 544 PLVLVLMNGRPLALVKED--QQADAILETWFAGTEGGNAIADVLFGDYNPSGKLPMSF-PRSV-GQIPVYYNHLNTGRPY 619 (765)
T ss_pred CEEEEEeCCceeeccchh--hcCCeEEeecCCchhhhHHHHHHHcCCCCCCCCCccce-eCCC-CcCccccccCCCCCcc
Confidence 999999999999999863 58999999999999999999999999999999999997 8887 7888654221111112
Q ss_pred -----CCCcccccCC--CcccccCcCCCcCCceecccccCCCccccccccccccccccccccceeeccccCCCceeEEEE
Q 010408 343 -----PGRTYRFYKG--PVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLH 415 (511)
Q Consensus 343 -----~~~~Yr~~~~--~~lypFG~GLSYTtF~ys~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 415 (511)
.+.+||||+. +|+||||||||||+|+||++++++. . .. .+. .++|+
T Consensus 620 ~e~~~~~y~yry~d~~~~plypFG~GLSYT~F~ys~l~v~~~--------------------~--~~----~~~-~i~v~ 672 (765)
T PRK15098 620 NPDKPNKYTSRYFDEANGPLYPFGYGLSYTTFTVSDVKLSSP--------------------T--MK----RDG-KVTAS 672 (765)
T ss_pred ccCcccccccceeccCCCccccccCCCCCccEEeeccEeccc--------------------c--cc----CCC-eEEEE
Confidence 1235899986 5999999999999999999987520 0 11 012 69999
Q ss_pred EEEEeCCCCCcceEEEEEeeCCCCC-CCcccccccccccccCCCCeEEEEEEecCCCCeeEEeCCCCEEecCeEEEEEEe
Q 010408 416 VDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIG 494 (511)
Q Consensus 416 v~V~NtG~~~G~evvQlY~~~~~~~-~~P~k~L~gF~kv~L~pGe~~~v~~~l~~~~~ls~~d~~~~~~~~~G~y~i~vG 494 (511)
|+|||||+++|+||||||+++|.++ .+|.||||||+||+|+|||+++|+|+|++ ++|++||.+++|++|+|+|+|+||
T Consensus 673 v~V~NtG~~~G~EVvQlYv~~~~~~~~~P~k~L~gF~Kv~L~pGes~~V~~~l~~-~~L~~~d~~~~~~~e~G~y~v~vG 751 (765)
T PRK15098 673 VTVTNTGKREGATVVQLYLQDVTASMSRPVKELKGFEKIMLKPGETQTVSFPIDI-EALKFWNQQMKYVAEPGKFNVFIG 751 (765)
T ss_pred EEEEECCCCCccEEEEEeccCCCCCCCCHHHhccCceeEeECCCCeEEEEEeecH-HHhceECCCCcEEEeCceEEEEEE
Confidence 9999999999999999999999877 89999999999999999999999999998 999999999999999999999999
Q ss_pred CCCceEE
Q 010408 495 DLKHSIS 501 (511)
Q Consensus 495 ~ss~~~~ 501 (511)
.||++++
T Consensus 752 ~ss~d~~ 758 (765)
T PRK15098 752 LDSARVK 758 (765)
T ss_pred CCCCccc
Confidence 9999875
No 3
>PF00933 Glyco_hydro_3: Glycosyl hydrolase family 3 N terminal domain; InterPro: IPR001764 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase (3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often N-terminal to the glycoside hydrolase family 3, C-terminal domain IPR002772 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1Y65_A 2OXN_A 3GS6_A 1TR9_A 3GSM_A 3UT0_B 3RRX_A 3USZ_A 2X42_A 2X40_A ....
Probab=100.00 E-value=5e-43 Score=355.62 Aligned_cols=156 Identities=36% Similarity=0.633 Sum_probs=130.3
Q ss_pred ceee-ecccccccCCCCCcccccccCCCHHHHHHHHHHHHHHHhcCCCCCCcEEEeecccccCCccCCCCCCcccccccc
Q 010408 8 GLTY-WSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNARV 86 (511)
Q Consensus 8 Gi~~-~aP~vdi~r~Pr~gR~~EsfgEDP~l~~~~a~a~v~G~Q~~~~~~~~V~a~~KHF~g~g~~~~~~~~r~~~~~~~ 86 (511)
|||+ |||++||.|||+|||+.|||||||+++++|+.|+|+|+|+. ||++|+||||||+.. +.++....+.+
T Consensus 102 Gin~~~aPv~Dv~~~p~~~~~~rsfgeDp~~v~~~~~a~v~G~q~~-----gv~~~~KHFpG~~~~---d~~~~~~~~~~ 173 (299)
T PF00933_consen 102 GINVNFAPVVDVNRNPRWGRGERSFGEDPDLVAEMARAFVRGLQGA-----GVAATAKHFPGHGAQ---DSHRDLPSVDV 173 (299)
T ss_dssp T-SEEEEEB----SSTTSTTGGGSS-SSHHHHHHHHHHHHHHHHCT-----TSEEEEEEETTGGCS---CTTTTTEEEE-
T ss_pred hhccccccceeeeeeccccccccccchhHHHHHHHHHHHhcccccc-----ccccccccccccccc---ccccccceecC
Confidence 9999 99999999999999999999999999999999999999998 899999999999533 35566667889
Q ss_pred CHhHHHhhcCHHHHHHHHhCCcceeEeeccCCCCccCccChHHHHHhhhhhcCCCcEEECCCCcccccccCCCCCCCHHH
Q 010408 87 SKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEE 166 (511)
Q Consensus 87 s~~~L~e~~L~PF~~ai~~g~~~sVM~syn~vng~pa~~s~~ll~~lLR~e~gF~G~VvSD~~~~~~~~~~~~~~~~~~~ 166 (511)
++++|+|.||+||+++|+++++.+||+|||.+|++|+|.|+.+|+++||+||||+|+|||||.+|..+...+. ..+
T Consensus 174 ~~~~l~~~~l~pF~~~i~~ag~~~VM~sy~~id~~pas~s~~~l~~lLR~~lgf~G~viSD~~~m~~~~~~~~----~~~ 249 (299)
T PF00933_consen 174 SERELREIDLPPFRAAIKDAGADAVMTSYPAIDGTPASLSPKILTDLLRNELGFDGVVISDDLEMGALSSNYS----IEE 249 (299)
T ss_dssp -HHHHHHTTSHHHHHHHHHTT-SEEEE-STCCTTEEGGG-HHHHCCCCCCCS---SEEEESTTTSHHHHCCTT----HHH
T ss_pred CcccccchhcccchhcccccccceeeeeccccCCccchhhhccchhhCcCcccCCCeEecccchHHHHHhccc----cch
Confidence 9999999999999999955559999999999999999999999999999999999999999999998875332 789
Q ss_pred HHHHchhcc
Q 010408 167 AAADAIKAG 175 (511)
Q Consensus 167 a~~~ai~AG 175 (511)
++.+||+||
T Consensus 250 ~~~~al~AG 258 (299)
T PF00933_consen 250 AAVRALNAG 258 (299)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhCc
Confidence 999999999
No 4
>COG1472 BglX Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.5e-42 Score=360.33 Aligned_cols=157 Identities=30% Similarity=0.562 Sum_probs=144.2
Q ss_pred ceee-ecccccccCCCCCcccccc-cCCCHHHHHHHHHHHHHHHhcCCCCCCcEEEeecccccCCccCCCCCCccccccc
Q 010408 8 GLTY-WSPNVNIFRDPRWGRGQET-PGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNAR 85 (511)
Q Consensus 8 Gi~~-~aP~vdi~r~Pr~gR~~Es-fgEDP~l~~~~a~a~v~G~Q~~~~~~~~V~a~~KHF~g~g~~~~~~~~r~~~~~~ 85 (511)
|||+ |||++||.|||+|||+.|+ |||||++++.|+.|+|+|||+. ||++|+|||||||.++ .++|..++.
T Consensus 113 Gin~~fAPvlDv~~~p~~~ri~ersfgeDP~lv~~l~~a~i~Glq~~-----gv~at~KHFpGhG~~~---~dsh~~~~~ 184 (397)
T COG1472 113 GINLDFAPVLDVARDPRWGRIGERSFGEDPELVALLAAAFIKGLQGA-----GVAATIKHFPGHGAVE---GDSHYGLLP 184 (397)
T ss_pred CCCccccceeecccCCCcCccccccCCCCHHHHHHHHHHHHHHHhhC-----CceeeeccccCCCCCc---CCcccccCC
Confidence 9999 9999999999999998887 9999999999999999999998 8999999999999876 456654489
Q ss_pred cCHhHHHhhcCHHHHHHHHhCC--cceeEeeccCCCCccCccChHHHHHhhhhhcCCCcEEECCCCcccccccCCCCCCC
Q 010408 86 VSKQDLEDTYNVPFKACVVEGK--VASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRT 163 (511)
Q Consensus 86 ~s~~~L~e~~L~PF~~ai~~g~--~~sVM~syn~vng~pa~~s~~ll~~lLR~e~gF~G~VvSD~~~~~~~~~~~~~~~~ 163 (511)
++++.|+|+|++||+.+++.+. ++++|++||++||.|||.|+++|++|||++|||+|+|||||++|..+...+ .+
T Consensus 185 v~~~~L~e~~~~~f~~~~~~~~~~~mtahv~y~~id~~Pat~s~~ll~diLR~~~GF~G~ViSD~~~m~~~~~~~---g~ 261 (397)
T COG1472 185 IDPRALRELYLPPFQPAIALGDDAAMTAHVAYPKIDGTPATLSRKLLTDILRDEWGFDGVVISDDLSMKAIAAAH---GS 261 (397)
T ss_pred CChHHHHHhhccchHHHHHhccccceEEeeeccCCCCCcccCCHHHHHHHHHhccCCCeEEEeecchhHHHHHhc---cC
Confidence 9999999999999999999996 899999999999999999999999999999999999999999999876543 34
Q ss_pred HHHHHHHchhcc
Q 010408 164 PEEAAADAIKAG 175 (511)
Q Consensus 164 ~~~a~~~ai~AG 175 (511)
..+.+..+|+||
T Consensus 262 ~~d~~~~al~AG 273 (397)
T COG1472 262 AADRAEAALKAG 273 (397)
T ss_pred HHHHHHHHHhcC
Confidence 566777799999
No 5
>PRK05337 beta-hexosaminidase; Provisional
Probab=100.00 E-value=5e-39 Score=329.35 Aligned_cols=157 Identities=21% Similarity=0.293 Sum_probs=136.9
Q ss_pred ceee-ecccccccCCCCCcccccccCCCHHHHHHHHHHHHHHHhcCCCCCCcEEEeecccccCCccCCCCCCcccccccc
Q 010408 8 GLTY-WSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNARV 86 (511)
Q Consensus 8 Gi~~-~aP~vdi~r~Pr~gR~~EsfgEDP~l~~~~a~a~v~G~Q~~~~~~~~V~a~~KHF~g~g~~~~~~~~r~~~~~~~ 86 (511)
|||+ |||++||.++++| |+.|||||||+++++|+.|+|+|+|+. ||++|+|||||||.+..+.+... .....
T Consensus 114 Gin~~~aPvlDv~~~~~~-ig~RsfgeDp~lv~~~a~a~i~Glq~~-----gv~~~~KHFpG~G~~~~dsh~~~-~~~~~ 186 (337)
T PRK05337 114 GIDLSFAPVLDLDGISAV-IGDRAFHRDPQVVAALASAFIDGMHAA-----GMAATGKHFPGHGAVEADSHVET-PVDER 186 (337)
T ss_pred CCCccccCccCCCCCCCe-eeccCCCCCHHHHHHHHHHHHHHHHHC-----CCEEEecccCCCCCCcCCCCCCC-CCCCC
Confidence 9999 9999999966555 778999999999999999999999998 89999999999998864332221 22345
Q ss_pred CHhHHHhhcCHHHHHHHHhCCcceeEee---ccCCCCccCccChHHHHHhhhhhcCCCcEEECCCCcccccccCCCCCCC
Q 010408 87 SKQDLEDTYNVPFKACVVEGKVASVMCS---YNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRT 163 (511)
Q Consensus 87 s~~~L~e~~L~PF~~ai~~g~~~sVM~s---yn~vng~pa~~s~~ll~~lLR~e~gF~G~VvSD~~~~~~~~~~~~~~~~ 163 (511)
+.++|++.||+||+++|++| +.+|||| ||.+|++|||.|+++|++|||+||||+|+|||||.+|..+. ...+
T Consensus 187 ~~~el~~~~l~PF~~ai~~g-~~~vM~aHv~y~~id~~Pa~~S~~~l~~lLR~elGF~G~ViSD~l~m~a~~----~~~~ 261 (337)
T PRK05337 187 PLEEIRAEDMAPFRALIAAG-LDAVMPAHVIYPQVDPRPAGFSRYWLQDILRQELGFDGVIFSDDLSMEGAA----VAGD 261 (337)
T ss_pred CHHHHHhhhHHHHHHHHhcC-CCEEEeCceeccCCCCCCCcCCHHHHHHHHHHhcCCCEEEEecchhhhhhh----hcCC
Confidence 66799999999999999988 9999999 99999999999999999999999999999999999987542 2346
Q ss_pred HHHHHHHchhccc
Q 010408 164 PEEAAADAIKAGV 176 (511)
Q Consensus 164 ~~~a~~~ai~AG~ 176 (511)
..+++.+||+||.
T Consensus 262 ~~~~~~~al~AG~ 274 (337)
T PRK05337 262 YAERAQAALDAGC 274 (337)
T ss_pred HHHHHHHHHHcCC
Confidence 7889999999993
No 6
>PF01915 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-terminal domain; InterPro: IPR002772 Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase(3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often C-terminal to the glycoside hydrolase family 3, N-terminal domain IPR001764 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3LK6_D 3NVD_B 3BMX_B 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A 1J8V_A 1IEX_A ....
Probab=99.97 E-value=5.1e-32 Score=264.54 Aligned_cols=175 Identities=39% Similarity=0.594 Sum_probs=124.9
Q ss_pred cCCccchhhhhhhhee---eeccCCccccccCCcchHHHHHHHHhhCCEEEEEeccCCCCcccc--------CCCCCCCC
Q 010408 177 ACGYTTPLQGISRYAK---TIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEF--------IDRAGLLL 245 (511)
Q Consensus 177 ~~~~~~~l~~~~~~~~---~~~~~G~~~~~~~~~~~~~~a~~~a~~aD~vVv~vG~~~~~e~Eg--------~Dr~~l~L 245 (511)
+....++++++++... ..+..++. .......++++++.++++|++|+++|.. ++|+ .||.++.|
T Consensus 42 ~~~~~t~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~aD~vIv~~~~~---~~e~~~~~~~~~~~~~~~~l 116 (227)
T PF01915_consen 42 PGYGVTPLDALKQRFGNAGVVVPEGGD--AVDDDEGIDEAVAAAKEADVVIVFVGRP---SGEGNDNNTEGESDRSDLAL 116 (227)
T ss_dssp CSTHBHHHHHHHHHHHTTSEEEECCCC--CCCCCSCHHHHHHHHHCSSEEEEEEETT---SBCCCSS-EETTGSCSSTBC
T ss_pred ccccccHHhhhccccCCCceEEeeecc--ccccccchHHHHHHhhcCCEEEEecccc---ccccccccccccCCcccccc
Confidence 4457788899887732 22221111 1123567889999999999999999922 2333 69999999
Q ss_pred ChhHHHHHHHHHHhCCCCEEEEEeCCceEEccCccCCCCccEEEEecCCChhHHHHHHHHHcCCCCCCeecCceeccccc
Q 010408 246 PGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDY 325 (511)
Q Consensus 246 p~~q~~Li~~va~~~~kpvVvVl~~g~P~~l~~~~~~~~v~Ail~a~~pG~e~g~AiAdVL~G~~nPsGkLPvT~~p~~~ 325 (511)
+..|.+||+++++.+ +|+|||+++|+||+|.++. ++++|||++|++|+++++|+||||||++|||||||+|| |++.
T Consensus 117 ~~~q~~li~~v~~~~-~~~Ivvv~~~~P~~l~~~~--~~~~Ail~~~~~g~~~~~A~advL~G~~~PsGkLPvT~-p~~~ 192 (227)
T PF01915_consen 117 PANQQELIKAVAAAG-KKVIVVVNSGNPYDLDPWE--DNVDAILAAYYPGQEGGEAIADVLFGDVNPSGKLPVTI-PKSM 192 (227)
T ss_dssp CCHHHHHHHHHHHHH-SCEEEEEE-SSGGCGHCCH--HC-SEEEEEES-GSBHHHHHHHHHTTSS---B--SS-B-ESSG
T ss_pred hhhHHHHHHHHHHhc-CCeEEEEecCCccccHHHH--hhhceEeeccccchHHHHHHHHHHcCCCCCCCCcceec-cCCh
Confidence 999999999999764 6899999999999997664 48999999999999999999999999999999999997 8886
Q ss_pred CCCCCCccccccccCCCCCCcccccCCCcccccCcCCCcCC
Q 010408 326 VSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMSYTT 366 (511)
Q Consensus 326 ~~~~p~~~~~~~~~~~~~~~~Yr~~~~~~lypFG~GLSYTt 366 (511)
+++|...... ..+++|++....++||||||||||+
T Consensus 193 -~~~p~~~~~~-----~~~~~~~~~~~~~~~~fG~GLsyt~ 227 (227)
T PF01915_consen 193 -EDIPAYYNYG-----MYGRTYDYDSGPPLYPFGYGLSYTY 227 (227)
T ss_dssp -GGTTTTTTTS------THCCHHHHTTSESB-TT--B-TT-
T ss_pred -hhCCCccccc-----ccCcccccCCCCccCcCCCCCEeeC
Confidence 7788543211 1345677778899999999999996
No 7
>PF14310 Fn3-like: Fibronectin type III-like domain; PDB: 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A.
Probab=99.85 E-value=1.2e-21 Score=156.50 Aligned_cols=69 Identities=26% Similarity=0.463 Sum_probs=59.9
Q ss_pred eEEEEEeeCCCCC-CCcccccccccccccCCCCeEEEEEEecCCCCeeEEeCC-CCEEecCeEEEEEEeCCC
Q 010408 428 HTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKF-GIRRIPMGEHSLHIGDLK 497 (511)
Q Consensus 428 evvQlY~~~~~~~-~~P~k~L~gF~kv~L~pGe~~~v~~~l~~~~~ls~~d~~-~~~~~~~G~y~i~vG~ss 497 (511)
||||||+++|.++ .+|.|+|+||+||+|+|||+++|+|+|++ ++|++||.+ ++|++++|+|+|+||+||
T Consensus 1 EVvqlY~~~~~~~~~~P~~~L~gF~rv~l~pGes~~v~~~l~~-~~l~~~d~~~~~~~~~~G~~~l~vG~sS 71 (71)
T PF14310_consen 1 EVVQLYVSDPQSSVQRPVKQLVGFERVSLAPGESKTVSFTLPP-EDLAYWDEDAGKWVIEPGTYTLSVGDSS 71 (71)
T ss_dssp EEEEEEEEESSSSS---S-EEEEEEEEEE-TT-EEEEEEEEEH-HHHEEEETTTTCEEE-SEEEEEEEECCT
T ss_pred CEEEEEEEeCCCCCCCchheecceEEEEECCCCEEEEEEEECH-HHEeeEcCCCCEEEEeCCeEEEEEECCC
Confidence 8999999999987 89999999999999999999999999999 999999998 699999999999999987
No 8
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=96.62 E-value=0.0079 Score=50.15 Aligned_cols=61 Identities=15% Similarity=0.283 Sum_probs=44.7
Q ss_pred eEEEEEEEEeCCCC-CcceEEEEEeeCCCCCCCccccccccccc-ccCCCCeEEEEEEecCCCCeeEEeCCCCEEecCeE
Q 010408 411 SLGLHVDIKNTGDM-AGTHTLLVFAKPPAGNWSPNKQLIGFKKV-HVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGE 488 (511)
Q Consensus 411 ~~~v~v~V~NtG~~-~G~evvQlY~~~~~~~~~P~k~L~gF~kv-~L~pGe~~~v~~~l~~~~~ls~~d~~~~~~~~~G~ 488 (511)
.++++++|+|.|.. ++.-.+++|+.... .+-..| .|+||++++++|.+.. . .+|.
T Consensus 20 ~~~i~~~V~N~G~~~~~~~~v~~~~~~~~---------~~~~~i~~L~~g~~~~v~~~~~~-~-------------~~G~ 76 (101)
T PF07705_consen 20 PVTITVTVKNNGTADAENVTVRLYLDGNS---------VSTVTIPSLAPGESETVTFTWTP-P-------------SPGS 76 (101)
T ss_dssp EEEEEEEEEE-SSS-BEEEEEEEEETTEE---------EEEEEESEB-TTEEEEEEEEEE--S-------------S-CE
T ss_pred EEEEEEEEEECCCCCCCCEEEEEEECCce---------eccEEECCcCCCcEEEEEEEEEe-C-------------CCCe
Confidence 68999999999987 46678888876542 255556 6999999999999997 3 5688
Q ss_pred EEEEEe
Q 010408 489 HSLHIG 494 (511)
Q Consensus 489 y~i~vG 494 (511)
|+|.+-
T Consensus 77 ~~i~~~ 82 (101)
T PF07705_consen 77 YTIRVV 82 (101)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 877664
No 9
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=96.06 E-value=0.045 Score=44.81 Aligned_cols=67 Identities=16% Similarity=0.182 Sum_probs=34.0
Q ss_pred EEEEEEEEeCCCCC------cceEEEEEeeCCCCC-------CCcccccccccccccCCCCeEEEEEEecCCCCeeEEeC
Q 010408 412 LGLHVDIKNTGDMA------GTHTLLVFAKPPAGN-------WSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDK 478 (511)
Q Consensus 412 ~~v~v~V~NtG~~~------G~evvQlY~~~~~~~-------~~P~k~L~gF~kv~L~pGe~~~v~~~l~~~~~ls~~d~ 478 (511)
+.+.++|+|.++.+ .---.-+.|.++.+. ++.- ...++.+.|+|||+.+.+++++. .+++
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~F--tQal~~~~l~pGe~~~~~~~~~~-~~~~---- 74 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMF--TQALQEETLEPGESLTYEETWDL-KDLS---- 74 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT---------EEEEE-TT-EEEEEEEESS---------
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchh--hheeeEEEECCCCEEEEEEEECC-CCCC----
Confidence 45677777777642 122234445544432 2222 33456778999999999999998 6554
Q ss_pred CCCEEecCeEEEEE
Q 010408 479 FGIRRIPMGEHSLH 492 (511)
Q Consensus 479 ~~~~~~~~G~y~i~ 492 (511)
||+|++.
T Consensus 75 -------~G~Y~~~ 81 (82)
T PF12690_consen 75 -------PGEYTLE 81 (82)
T ss_dssp -------SEEEEEE
T ss_pred -------CceEEEe
Confidence 8999985
No 10
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=95.08 E-value=0.11 Score=41.68 Aligned_cols=66 Identities=18% Similarity=0.286 Sum_probs=36.3
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEeeCCCC-C--CCcccccccccccccCCCCeEEEEEEecCCCCeeEEeCCCCEEecCe
Q 010408 411 SLGLHVDIKNTGDMAGTHTLLVFAKPPAG-N--WSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMG 487 (511)
Q Consensus 411 ~~~v~v~V~NtG~~~G~evvQlY~~~~~~-~--~~P~k~L~gF~kv~L~pGe~~~v~~~l~~~~~ls~~d~~~~~~~~~G 487 (511)
.++++++|+|.|..+-. -+.|=+..|.+ . ..|. ++. .|+|||+++++|.|..-.+ .++|
T Consensus 6 ~~~~~~tv~N~g~~~~~-~v~~~l~~P~GW~~~~~~~-~~~-----~l~pG~s~~~~~~V~vp~~-----------a~~G 67 (78)
T PF10633_consen 6 TVTVTLTVTNTGTAPLT-NVSLSLSLPEGWTVSASPA-SVP-----SLPPGESVTVTFTVTVPAD-----------AAPG 67 (78)
T ss_dssp EEEEEEEEE--SSS-BS-S-EEEEE--TTSE---EEE-EE-------B-TTSEEEEEEEEEE-TT-------------SE
T ss_pred EEEEEEEEEECCCCcee-eEEEEEeCCCCccccCCcc-ccc-----cCCCCCEEEEEEEEECCCC-----------CCCc
Confidence 68999999999976532 23444444543 1 1221 111 7999999999999997221 2689
Q ss_pred EEEEEEe
Q 010408 488 EHSLHIG 494 (511)
Q Consensus 488 ~y~i~vG 494 (511)
+|.|.+-
T Consensus 68 ~y~v~~~ 74 (78)
T PF10633_consen 68 TYTVTVT 74 (78)
T ss_dssp EEEEEEE
T ss_pred eEEEEEE
Confidence 9988764
No 11
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=92.18 E-value=0.26 Score=41.45 Aligned_cols=51 Identities=24% Similarity=0.156 Sum_probs=30.2
Q ss_pred EEEEEEEEeCCCCCcceEEEEEeeCCCCCCCc-----ccc-------cccccccccCCCCeEEEEEE
Q 010408 412 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQ-------LIGFKKVHVTAGALQSVRLD 466 (511)
Q Consensus 412 ~~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P-----~k~-------L~gF~kv~L~pGe~~~v~~~ 466 (511)
-+++++|+|||+|+ +|+=-...--...| ... +-.=+-|+.+|||+++|++-
T Consensus 20 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T TIGR00192 20 KTVSVKVKNTGDRP----IQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELV 82 (101)
T ss_pred cEEEEEEEeCCCcc----eEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 36889999999998 78733221110111 011 11123467789999999875
No 12
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=91.95 E-value=0.25 Score=41.44 Aligned_cols=51 Identities=22% Similarity=0.228 Sum_probs=26.1
Q ss_pred EEEEEEEEeCCCCCcceEEEEEeeCCCCCCCcc-----ccccc-------ccccccCCCCeEEEEEE
Q 010408 412 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPN-----KQLIG-------FKKVHVTAGALQSVRLD 466 (511)
Q Consensus 412 ~~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~-----k~L~g-------F~kv~L~pGe~~~v~~~ 466 (511)
-+++++|+|||+|+ +|+=-...-....|. ..=.| =+-|+.+|||+++|++-
T Consensus 19 ~~~~l~V~N~GDRP----IQVGSH~HF~E~N~aL~FDR~~A~G~RLdIPaGTavRFEPG~~k~V~LV 81 (100)
T PF00699_consen 19 ERITLEVTNTGDRP----IQVGSHYHFFEVNPALEFDREAAYGMRLDIPAGTAVRFEPGDTKEVELV 81 (100)
T ss_dssp EEEEEEEEE-SSS-----EEEETTS-GGGS-TTEES-HHHHTTEEE-SSTT-EEEE-TT-EEEEEEE
T ss_pred cEEEEEEEeCCCcc----eEEccccCHHHHhHHhhhhHHHhCCcccCcCCCCeEEECCCCcEEEEEE
Confidence 57889999999998 887322211111111 00111 13466789999999874
No 13
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=90.95 E-value=2.3 Score=35.67 Aligned_cols=60 Identities=13% Similarity=0.128 Sum_probs=38.2
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEeeCCCCCCCcccccccccccccCCCCeEEEEEEecCCCCeeEE
Q 010408 411 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVV 476 (511)
Q Consensus 411 ~~~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv~L~pGe~~~v~~~l~~~~~ls~~ 476 (511)
..+.+++|+|+|....+--+ ..+....... + .-+.+-.|+||++.++++++.+......+
T Consensus 21 ~~~~~v~l~N~s~~p~~f~v----~~~~~~~~~~-~-v~~~~g~l~PG~~~~~~V~~~~~~~~g~~ 80 (102)
T PF14874_consen 21 TYSRTVTLTNTSSIPARFRV----RQPESLSSFF-S-VEPPSGFLAPGESVELEVTFSPTKPLGDY 80 (102)
T ss_pred EEEEEEEEEECCCCCEEEEE----EeCCcCCCCE-E-EECCCCEECCCCEEEEEEEEEeCCCCceE
Confidence 57889999999999865443 3333111111 1 12345569999999999999931445444
No 14
>PRK13203 ureB urease subunit beta; Reviewed
Probab=88.94 E-value=0.75 Score=38.82 Aligned_cols=51 Identities=20% Similarity=0.178 Sum_probs=30.1
Q ss_pred EEEEEEEEeCCCCCcceEEEEEeeCCCCCCCc-----ccc-------cccccccccCCCCeEEEEEE
Q 010408 412 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQ-------LIGFKKVHVTAGALQSVRLD 466 (511)
Q Consensus 412 ~~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P-----~k~-------L~gF~kv~L~pGe~~~v~~~ 466 (511)
-.++++|+|||+|+ +|+=-...--...| ... +-.=+-|+.+|||+++|++-
T Consensus 20 ~~~~l~V~NtGDRP----IQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (102)
T PRK13203 20 ETVTLTVANTGDRP----IQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVELV 82 (102)
T ss_pred CEEEEEEEeCCCCc----eEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 36889999999998 78733321110111 001 11123466789999999875
No 15
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=88.72 E-value=0.83 Score=38.53 Aligned_cols=51 Identities=24% Similarity=0.244 Sum_probs=30.1
Q ss_pred EEEEEEEEeCCCCCcceEEEEEeeCCCCCCCc-----cccccc-------ccccccCCCCeEEEEEE
Q 010408 412 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQLIG-------FKKVHVTAGALQSVRLD 466 (511)
Q Consensus 412 ~~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P-----~k~L~g-------F~kv~L~pGe~~~v~~~ 466 (511)
-.++++|+|||+|+ +|+=-...--...| ...=.| =+-|..+|||+++|++-
T Consensus 20 ~~~~l~V~NtGDRp----IQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T cd00407 20 EAVTLKVKNTGDRP----IQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELV 82 (101)
T ss_pred CEEEEEEEeCCCcc----eEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEEE
Confidence 36889999999998 78733221110111 111111 13466789999999875
No 16
>COG1470 Predicted membrane protein [Function unknown]
Probab=87.68 E-value=1.7 Score=46.40 Aligned_cols=74 Identities=20% Similarity=0.258 Sum_probs=46.5
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEeeCCCC-C-CCcccccccccccccCCCCeEEEEEEecCCCCeeEEeCCCCEEecCeE
Q 010408 411 SLGLHVDIKNTGDMAGTHTLLVFAKPPAG-N-WSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGE 488 (511)
Q Consensus 411 ~~~v~v~V~NtG~~~G~evvQlY~~~~~~-~-~~P~k~L~gF~kv~L~pGe~~~v~~~l~~~~~ls~~d~~~~~~~~~G~ 488 (511)
+..++|++.|-|+-+-.-..-+= +.|.. . ..-.-+|+ -.||.|+|||+++|++++.+. + -.+||+
T Consensus 285 t~sf~V~IeN~g~~~d~y~Le~~-g~pe~w~~~Fteg~~~-vt~vkL~~gE~kdvtleV~ps--~---------na~pG~ 351 (513)
T COG1470 285 TASFTVSIENRGKQDDEYALELS-GLPEGWTAEFTEGELR-VTSVKLKPGEEKDVTLEVYPS--L---------NATPGT 351 (513)
T ss_pred ceEEEEEEccCCCCCceeEEEec-cCCCCcceEEeeCceE-EEEEEecCCCceEEEEEEecC--C---------CCCCCc
Confidence 56788999999987633322221 12221 1 11122222 567889999999999999982 1 237888
Q ss_pred EEEEEeCCC
Q 010408 489 HSLHIGDLK 497 (511)
Q Consensus 489 y~i~vG~ss 497 (511)
|.+.|-.++
T Consensus 352 Ynv~I~A~s 360 (513)
T COG1470 352 YNVTITASS 360 (513)
T ss_pred eeEEEEEec
Confidence 888776544
No 17
>PRK13201 ureB urease subunit beta; Reviewed
Probab=85.61 E-value=1.5 Score=38.82 Aligned_cols=51 Identities=20% Similarity=0.157 Sum_probs=30.8
Q ss_pred EEEEEEEEeCCCCCcceEEEEEeeCCCCCCCc-----cccccc-------ccccccCCCCeEEEEEE
Q 010408 412 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQLIG-------FKKVHVTAGALQSVRLD 466 (511)
Q Consensus 412 ~~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P-----~k~L~g-------F~kv~L~pGe~~~v~~~ 466 (511)
-+++++|+|||+|+ +|+=-...--...| ...=.| =+-|+.+|||+++|++-
T Consensus 20 ~~~~l~V~NtGDRP----IQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 82 (136)
T PRK13201 20 PETVIEVENTGDRP----IQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRFEPGDKKEVQLV 82 (136)
T ss_pred CEEEEEEEeCCCcc----eEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 36889999999998 88733221110111 011111 13467899999999986
No 18
>PRK13202 ureB urease subunit beta; Reviewed
Probab=85.20 E-value=1.9 Score=36.54 Aligned_cols=50 Identities=22% Similarity=0.154 Sum_probs=29.8
Q ss_pred EEEEEEEeCCCCCcceEEEEEeeCCCCCCCcc-----cc-------cccccccccCCCCeEEEEEE
Q 010408 413 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPN-----KQ-------LIGFKKVHVTAGALQSVRLD 466 (511)
Q Consensus 413 ~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~-----k~-------L~gF~kv~L~pGe~~~v~~~ 466 (511)
+++++|+|||+|+ +|+=-...--...|. .. +-.=+-|..+|||+++|++-
T Consensus 22 ~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 83 (104)
T PRK13202 22 RLQMRIINAGDRP----VQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLV 83 (104)
T ss_pred eEEEEEEeCCCCc----eEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEE
Confidence 6889999999998 787332211101110 01 11123466789999999875
No 19
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=84.82 E-value=9.2 Score=31.42 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=31.5
Q ss_pred EEEEEEEeCCCCCcceEEEEEeeCC-CCCCCcccccccccccccCCCCeEEEEEEecC
Q 010408 413 GLHVDIKNTGDMAGTHTLLVFAKPP-AGNWSPNKQLIGFKKVHVTAGALQSVRLDIHV 469 (511)
Q Consensus 413 ~v~v~V~NtG~~~G~evvQlY~~~~-~~~~~P~k~L~gF~kv~L~pGe~~~v~~~l~~ 469 (511)
.+.++++|.|+.+ +.+-|.+. .....| .++.|+||++.++.+.+..
T Consensus 21 ~l~l~l~N~g~~~----~~~~v~~~~y~~~~~-------~~~~v~ag~~~~~~w~l~~ 67 (89)
T PF05506_consen 21 NLRLTLSNPGSAA----VTFTVYDNAYGGGGP-------WTYTVAAGQTVSLTWPLAA 67 (89)
T ss_pred EEEEEEEeCCCCc----EEEEEEeCCcCCCCC-------EEEEECCCCEEEEEEeecC
Confidence 6888899986554 44444442 211233 6778999999999999953
No 20
>PRK13205 ureB urease subunit beta; Reviewed
Probab=83.74 E-value=1.9 Score=38.96 Aligned_cols=51 Identities=22% Similarity=0.238 Sum_probs=31.2
Q ss_pred EEEEEEEEeCCCCCcceEEEEEeeCCCCCCCc-----cccccc-------ccccccCCCCeEEEEEE
Q 010408 412 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQLIG-------FKKVHVTAGALQSVRLD 466 (511)
Q Consensus 412 ~~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P-----~k~L~g-------F~kv~L~pGe~~~v~~~ 466 (511)
-.++++|+|||+|+ +|+=-+..--...| ...=.| =.-|..+||++++|++.
T Consensus 20 ~~i~L~V~NtGDRP----IQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRFEPGe~ktV~LV 82 (162)
T PRK13205 20 EAKTIEIINTGDRP----VQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRLEPGDARTVNLV 82 (162)
T ss_pred cEEEEEEEeCCCCc----eEeccccchhhcCccccccHHHhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 36889999999998 78733321111111 111111 13467899999999987
No 21
>COG1470 Predicted membrane protein [Function unknown]
Probab=82.95 E-value=7.7 Score=41.53 Aligned_cols=81 Identities=16% Similarity=0.262 Sum_probs=53.4
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEeeCCCCCCCccccccccccc-ccCCCCeEEEEEEecCCCCeeEEeCCCCEEecCeEE
Q 010408 411 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKV-HVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEH 489 (511)
Q Consensus 411 ~~~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv-~L~pGe~~~v~~~l~~~~~ls~~d~~~~~~~~~G~y 489 (511)
..++.+.|.|+|..+=.. +-|=+..|..= ..+.-.+ ++ .|+|||+++|+++|+.-+ + ..+|+|
T Consensus 398 e~~i~i~I~NsGna~Ltd-Ikl~v~~PqgW---ei~Vd~~-~I~sL~pge~~tV~ltI~vP~--------~---a~aGdY 461 (513)
T COG1470 398 EKTIRISIENSGNAPLTD-IKLTVNGPQGW---EIEVDES-TIPSLEPGESKTVSLTITVPE--------D---AGAGDY 461 (513)
T ss_pred cceEEEEEEecCCCccce-eeEEecCCccc---eEEECcc-cccccCCCCcceEEEEEEcCC--------C---CCCCcE
Confidence 467888889999665444 34555555431 1244455 45 699999999999998611 1 267999
Q ss_pred EEEEeC------CCceEEEEEEEc
Q 010408 490 SLHIGD------LKHSISLQANLE 507 (511)
Q Consensus 490 ~i~vG~------ss~~~~~~~~~~ 507 (511)
+|.+-. ++..+++.|+..
T Consensus 462 ~i~i~~ksDq~s~e~tlrV~V~~s 485 (513)
T COG1470 462 RITITAKSDQASSEDTLRVVVGQS 485 (513)
T ss_pred EEEEEEeeccccccceEEEEEecc
Confidence 988874 445666666653
No 22
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=80.21 E-value=5 Score=34.83 Aligned_cols=54 Identities=17% Similarity=0.233 Sum_probs=38.0
Q ss_pred EEEEEEEeCCCCCcceEEEEEeeCCC-C-CCCccccccccccc-ccCCCCeEEEEEEecC
Q 010408 413 GLHVDIKNTGDMAGTHTLLVFAKPPA-G-NWSPNKQLIGFKKV-HVTAGALQSVRLDIHV 469 (511)
Q Consensus 413 ~v~v~V~NtG~~~G~evvQlY~~~~~-~-~~~P~k~L~gF~kv-~L~pGe~~~v~~~l~~ 469 (511)
..+++|+|+|+ -.-.+|+.+.... . ...+...|.=+=.+ .|+||++++|+| +..
T Consensus 17 ~~~i~v~N~~~--~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv-~~~ 73 (122)
T PF00345_consen 17 SASITVTNNSD--QPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRV-YRG 73 (122)
T ss_dssp EEEEEEEESSS--SEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEE-EEC
T ss_pred EEEEEEEcCCC--CcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEE-Eec
Confidence 57899999999 5567888887621 1 13333445555555 489999999999 554
No 23
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=79.37 E-value=4.6 Score=28.85 Aligned_cols=43 Identities=16% Similarity=0.331 Sum_probs=26.1
Q ss_pred EEEEEeCCCCCcceEEEEEeeCCCCC-CCcccccccccccccCCCCeEEEEEE
Q 010408 415 HVDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLD 466 (511)
Q Consensus 415 ~v~V~NtG~~~G~evvQlY~~~~~~~-~~P~k~L~gF~kv~L~pGe~~~v~~~ 466 (511)
+++++|+|+.+ +++.=-....+ ..+ .+.|-.|+|||+..++++
T Consensus 1 ~F~~~N~g~~~----L~I~~v~tsCgCt~~-----~~~~~~i~PGes~~i~v~ 44 (45)
T PF07610_consen 1 TFEFTNTGDSP----LVITDVQTSCGCTTA-----EYSKKPIAPGESGKIKVT 44 (45)
T ss_pred CEEEEECCCCc----EEEEEeeEccCCEEe-----eCCcceECCCCEEEEEEE
Confidence 37889998865 33322222222 222 255656999999998875
No 24
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=78.21 E-value=16 Score=31.17 Aligned_cols=59 Identities=22% Similarity=0.233 Sum_probs=32.5
Q ss_pred eEEEEEEEEeCCCCCcceEEEEE-ee----CCCCC---CCc-c----cccccccccccCCCCeEEEEEEecC
Q 010408 411 SLGLHVDIKNTGDMAGTHTLLVF-AK----PPAGN---WSP-N----KQLIGFKKVHVTAGALQSVRLDIHV 469 (511)
Q Consensus 411 ~~~v~v~V~NtG~~~G~evvQlY-~~----~~~~~---~~P-~----k~L~gF~kv~L~pGe~~~v~~~l~~ 469 (511)
..+.+++|+|.|+.+=.-.+... +. ..... ..+ . .....=.+|.|+||++++|+++|+.
T Consensus 9 ~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~ 80 (112)
T PF06280_consen 9 KFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITP 80 (112)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE-
T ss_pred ceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEe
Confidence 46789999999998766555444 11 11111 111 1 1222234567999999999999997
No 25
>PRK13204 ureB urease subunit beta; Reviewed
Probab=78.12 E-value=4.3 Score=36.84 Aligned_cols=51 Identities=18% Similarity=0.150 Sum_probs=30.4
Q ss_pred EEEEEEEEeCCCCCcceEEEEEeeCCCCCCCcc-----ccccc-------ccccccCCCCeEEEEEE
Q 010408 412 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPN-----KQLIG-------FKKVHVTAGALQSVRLD 466 (511)
Q Consensus 412 ~~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~-----k~L~g-------F~kv~L~pGe~~~v~~~ 466 (511)
-.++++|+|||+|+ +||=-...--...|. ..=.| =.-|+.+|||+++|++.
T Consensus 43 ~~~~l~V~NtGDRP----IQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 105 (159)
T PRK13204 43 PRTTLTVRNTGDRP----IQIGSHFHFFEVNRYLEFDRSKAFGLRLDIPANTAVRFEPGDEKEVTLV 105 (159)
T ss_pred cEEEEEEEeCCCCc----eEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 35889999999998 787332211101110 11111 13467799999999875
No 26
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=77.33 E-value=7.2 Score=32.89 Aligned_cols=39 Identities=8% Similarity=0.002 Sum_probs=22.0
Q ss_pred EEEEEEEeCCCCCcceEEEEEeeCCCCCCCcccccccccccccCCCCeEEEEEEe
Q 010408 413 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDI 467 (511)
Q Consensus 413 ~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv~L~pGe~~~v~~~l 467 (511)
.|+++++|.|... .+++ +.. ......|.||++++++|.-
T Consensus 44 ~v~l~~~N~~~~~-h~~~---i~~------------~~~~~~l~~g~~~~~~f~~ 82 (104)
T PF13473_consen 44 PVTLTFTNNDSRP-HEFV---IPD------------LGISKVLPPGETATVTFTP 82 (104)
T ss_dssp EEEEEEEE-SSS--EEEE---EGG------------GTEEEEE-TT-EEEEEEEE
T ss_pred eEEEEEEECCCCc-EEEE---ECC------------CceEEEECCCCEEEEEEcC
Confidence 4678889999885 2221 111 1223679999999999853
No 27
>PRK13198 ureB urease subunit beta; Reviewed
Probab=76.21 E-value=5.2 Score=36.27 Aligned_cols=51 Identities=20% Similarity=0.126 Sum_probs=30.4
Q ss_pred EEEEEEEEeCCCCCcceEEEEEeeCCCCCCCc-----cccccc-------ccccccCCCCeEEEEEE
Q 010408 412 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQLIG-------FKKVHVTAGALQSVRLD 466 (511)
Q Consensus 412 ~~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P-----~k~L~g-------F~kv~L~pGe~~~v~~~ 466 (511)
-+++++|+|||+|+ +|+=-...--...| ...=.| =+-|+.+||++++|++.
T Consensus 48 ~~~~l~V~NtGDRP----IQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 110 (158)
T PRK13198 48 PVTKVKVRNTGDRP----IQVGSHFHFFEVNRALEFDRAAAYGKRLNISSTTAIRFEPGDETEVPLI 110 (158)
T ss_pred cEEEEEEEeCCCCc----eEeccccchhhcCccccccHhhhcCcccccCCCCeEeeCCCCeeEEEEE
Confidence 36889999999998 78733221110111 111111 23467799999999875
No 28
>PF06510 DUF1102: Protein of unknown function (DUF1102); InterPro: IPR009482 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=73.95 E-value=20 Score=32.43 Aligned_cols=54 Identities=11% Similarity=0.100 Sum_probs=33.7
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEeeCCCCC-CCcc-cccccccccccCCCCeEEEEEEecC
Q 010408 411 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGN-WSPN-KQLIGFKKVHVTAGALQSVRLDIHV 469 (511)
Q Consensus 411 ~~~v~v~V~NtG~~~G~evvQlY~~~~~~~-~~P~-k~L~gF~kv~L~pGe~~~v~~~l~~ 469 (511)
.+.|.|+|+ .....+++|..+-... ..|- -.-+.-=.+.|.|||+..|=+.++.
T Consensus 69 ~~~IcV~I~-----s~~~~i~fy~~~~~~~~~~~~sd~a~~~i~ftv~~ge~v~VGm~~~~ 124 (146)
T PF06510_consen 69 DVPICVTIS-----SSSDSIEFYTGDYDSYITGPGSDSARQSICFTVEPGESVKVGMIFDS 124 (146)
T ss_pred CceEEEEEe-----cCCCcEEEEecCCCccccCCccccccceEEEEecCCCeeEEEEEEec
Confidence 367778777 2356799998654332 2221 1111111245899999999999986
No 29
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=72.56 E-value=14 Score=32.43 Aligned_cols=57 Identities=25% Similarity=0.276 Sum_probs=37.3
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEeeCCCC-----------------C-CCcccccccccc-cccCCCCeEEEEEEecC
Q 010408 411 SLGLHVDIKNTGDMAGTHTLLVFAKPPAG-----------------N-WSPNKQLIGFKK-VHVTAGALQSVRLDIHV 469 (511)
Q Consensus 411 ~~~v~v~V~NtG~~~G~evvQlY~~~~~~-----------------~-~~P~k~L~gF~k-v~L~pGe~~~v~~~l~~ 469 (511)
..+++++|+|+++.+-+ +++++..-.. + ..+..+|....+ |.|+|+|+++|+|+|..
T Consensus 28 ~~~l~v~i~N~s~~~~t--v~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~Vtl~~~~sk~V~~~i~~ 103 (121)
T PF06030_consen 28 KQTLEVRITNNSDKEIT--VKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKEVTLPPNESKTVTFTIKM 103 (121)
T ss_pred EEEEEEEEEeCCCCCEE--EEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCCcEEEECCCCEEEEEEEEEc
Confidence 56788899998875543 4444433111 0 124455555544 68999999999999985
No 30
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=70.49 E-value=7.3 Score=37.09 Aligned_cols=51 Identities=24% Similarity=0.251 Sum_probs=30.2
Q ss_pred EEEEEEEEeCCCCCcceEEEEEeeCCCCCCCcc-----cccccc-------cccccCCCCeEEEEEE
Q 010408 412 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPN-----KQLIGF-------KKVHVTAGALQSVRLD 466 (511)
Q Consensus 412 ~~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~-----k~L~gF-------~kv~L~pGe~~~v~~~ 466 (511)
-.++++|+|||+|+ +|+=-...--...|. +.=.|| +-|+.+|||+++|++-
T Consensus 129 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV 191 (208)
T PRK13192 129 PAVTLDVTNTGDRP----IQVGSHFHFFEVNRALRFDRAAAYGMRLDIPAGTAVRFEPGETKEVRLV 191 (208)
T ss_pred CEEEEEEEeCCCCc----eeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 36889999999998 787332211111111 111111 3466789999998875
No 31
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=70.44 E-value=9.3 Score=39.72 Aligned_cols=53 Identities=17% Similarity=0.431 Sum_probs=29.7
Q ss_pred eEEEEEEEEeCCCCCcceEEEE---------EeeCCCCC---CCccccccccc------ccccCCCCeEEEEEEec
Q 010408 411 SLGLHVDIKNTGDMAGTHTLLV---------FAKPPAGN---WSPNKQLIGFK------KVHVTAGALQSVRLDIH 468 (511)
Q Consensus 411 ~~~v~v~V~NtG~~~G~evvQl---------Y~~~~~~~---~~P~k~L~gF~------kv~L~pGe~~~v~~~l~ 468 (511)
+++++++|||.|+.+ |+| |+.+.... ..|. +|.+-+ .--++|||+++++++++
T Consensus 264 ~l~~~l~VtN~g~~p----v~LgeF~tA~vrFln~~v~~~~~~~P~-~l~A~~gL~vs~~~pI~PGETrtl~V~a~ 334 (381)
T PF04744_consen 264 TLTMTLTVTNNGDSP----VRLGEFNTANVRFLNPDVPTDDPDYPD-ELLAERGLSVSDNSPIAPGETRTLTVEAQ 334 (381)
T ss_dssp EEEEEEEEEEESSS-----BEEEEEESSS-EEE-TTT-SS-S---T-TTEETT-EEES--S-B-TT-EEEEEEEEE
T ss_pred EEEEEEEEEcCCCCc----eEeeeEEeccEEEeCcccccCCCCCch-hhhccCcceeCCCCCcCCCceEEEEEEee
Confidence 799999999999865 333 22222221 2333 555442 22489999999999984
No 32
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=69.07 E-value=9.9 Score=32.20 Aligned_cols=58 Identities=12% Similarity=0.011 Sum_probs=34.7
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEee--CCCCCCCcc-cccccccccccCCCCeEEEEEEecC
Q 010408 411 SLGLHVDIKNTGDMAGTHTLLVFAK--PPAGNWSPN-KQLIGFKKVHVTAGALQSVRLDIHV 469 (511)
Q Consensus 411 ~~~v~v~V~NtG~~~G~evvQlY~~--~~~~~~~P~-k~L~gF~kv~L~pGe~~~v~~~l~~ 469 (511)
.++++++++|..+..-+. |++.+. .-.....+. .-.+-...+.|+|||++++++.|.+
T Consensus 16 d~~v~v~~~N~~~~~l~~-v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p 76 (107)
T PF00927_consen 16 DFTVSVSFTNPSSEPLRN-VSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTITP 76 (107)
T ss_dssp EEEEEEEEEE-SSS-EEC-EEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-H
T ss_pred CEEEEEEEEeCCcCcccc-ceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEEc
Confidence 699999999999887443 233332 111222232 2234455667999999999999987
No 33
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=68.72 E-value=17 Score=33.12 Aligned_cols=54 Identities=15% Similarity=0.249 Sum_probs=41.1
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEeeCCCCCCCcccccccccccc-cCCCCeEEEEEEecC
Q 010408 411 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVH-VTAGALQSVRLDIHV 469 (511)
Q Consensus 411 ~~~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv~-L~pGe~~~v~~~l~~ 469 (511)
-+.|.++.+|+++. ++--+-+..+. -..-.++++|.+|. |+||++.++.+-|+-
T Consensus 86 mvsIql~ftN~s~~---~i~~I~i~~k~--l~~g~~i~~F~~I~~L~pg~s~t~~lgIDF 140 (145)
T PF14796_consen 86 MVSIQLTFTNNSDE---PIKNIHIGEKK--LPAGMRIHEFPEIESLEPGASVTVSLGIDF 140 (145)
T ss_pred cEEEEEEEEecCCC---eecceEECCCC--CCCCcEeeccCcccccCCCCeEEEEEEEec
Confidence 37899999999985 44445555543 12344899999996 999999999999986
No 34
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=67.73 E-value=5.8 Score=38.44 Aligned_cols=56 Identities=14% Similarity=0.223 Sum_probs=29.5
Q ss_pred EEEeCCCCCcceEEEEEeeCCCCC---CCc--------ccccccccccccCCCCeEEEEEEecCCCCeeEEeC
Q 010408 417 DIKNTGDMAGTHTLLVFAKPPAGN---WSP--------NKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDK 478 (511)
Q Consensus 417 ~V~NtG~~~G~evvQlY~~~~~~~---~~P--------~k~L~gF~kv~L~pGe~~~v~~~l~~~~~ls~~d~ 478 (511)
+|-|-|. |.-+++||-+.+... ..| .+.+....+|.|+|||| ++|.+.---++|-+
T Consensus 111 DIINRGG--G~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGES----iTL~Pg~yH~Fw~e 177 (225)
T PF07385_consen 111 DIINRGG--GNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGES----ITLPPGIYHWFWGE 177 (225)
T ss_dssp EEEEEEE--S-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-E----EEE-TTEEEEEEE-
T ss_pred heeecCC--ceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCe----EeeCCCCeeeEEec
Confidence 5567654 778888888876442 222 34688899999999997 44566222345543
No 35
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=66.75 E-value=14 Score=32.61 Aligned_cols=52 Identities=27% Similarity=0.472 Sum_probs=31.3
Q ss_pred EEEEEEEeCCCCC----cceEEEEEeeCCCCC---------------CCcc--cccccccccccCCCCeEEEEEEec
Q 010408 413 GLHVDIKNTGDMA----GTHTLLVFAKPPAGN---------------WSPN--KQLIGFKKVHVTAGALQSVRLDIH 468 (511)
Q Consensus 413 ~v~v~V~NtG~~~----G~evvQlY~~~~~~~---------------~~P~--k~L~gF~kv~L~pGe~~~v~~~l~ 468 (511)
+|+|+.+|+|+.+ |.-.|- ..+... --|. .+..+..|+ |.|||+.+|+|+.+
T Consensus 26 ~vtv~l~h~G~lpk~~MgHN~Vl---~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkl-iggGes~svtF~~~ 98 (125)
T TIGR02695 26 EFTVNLKHTGKLPKAVMGHNWVL---AKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKV-IGGGEKTSVTFDVS 98 (125)
T ss_pred EEEEEEecCCcCchhccCccEEE---eccccHHHHHHHHHhcccccCccCCCCcceEEEccc-cCCCceEEEEEECC
Confidence 5888889999987 555552 222110 0111 122223322 79999999999986
No 36
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=66.53 E-value=15 Score=33.14 Aligned_cols=59 Identities=20% Similarity=0.228 Sum_probs=37.6
Q ss_pred eEEEEEEEEeCCCCCcceE---EEEEeeC-CCCC--CCccccccccccc------ccCCCCeEEEEEEecC
Q 010408 411 SLGLHVDIKNTGDMAGTHT---LLVFAKP-PAGN--WSPNKQLIGFKKV------HVTAGALQSVRLDIHV 469 (511)
Q Consensus 411 ~~~v~v~V~NtG~~~G~ev---vQlY~~~-~~~~--~~P~k~L~gF~kv------~L~pGe~~~v~~~l~~ 469 (511)
.+.|..+|||+|+++=+++ +.++=.+ .... ..=..++.+|.+- .|+|||++..++.++.
T Consensus 63 ~~~v~g~V~N~g~~~i~~c~i~~~l~~~~~~~~n~~~~~~~~~~~f~~~~~~i~~~L~~~e~~~f~~~~~~ 133 (149)
T PF09624_consen 63 SFYVDGTVTNTGKFTIKKCKITVKLYNDKQVSGNKFKEIFYQQIPFVKKSIPIADNLKPGESKEFRFIFPY 133 (149)
T ss_pred EEEEEEEEEECCCCEeeEEEEEEEEEeCCCccCchhhhhhccccchhccceeHHhhcCcccceeEEEEecC
Confidence 6899999999999876543 2222211 1111 2234455556322 2999999999999874
No 37
>PRK13986 urease subunit alpha; Provisional
Probab=65.39 E-value=11 Score=36.44 Aligned_cols=51 Identities=24% Similarity=0.195 Sum_probs=30.3
Q ss_pred EEEEEEEEeCCCCCcceEEEEEeeCCCCCCCc-----cccccc-------ccccccCCCCeEEEEEE
Q 010408 412 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQLIG-------FKKVHVTAGALQSVRLD 466 (511)
Q Consensus 412 ~~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P-----~k~L~g-------F~kv~L~pGe~~~v~~~ 466 (511)
-+++++|+|||+|+ +|+=-...--...| ...=.| =+-|+.+||++++|++-
T Consensus 125 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV 187 (225)
T PRK13986 125 KAVSVKVKNVGDRP----VQVGSHFHFFEVNRCLEFDREKAFGKRLDIASGTAVRFEPGEEKSVELI 187 (225)
T ss_pred cEEEEEEEeCCCCc----eeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 36889999999998 78732221110111 001111 23467799999999875
No 38
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=63.02 E-value=24 Score=31.08 Aligned_cols=57 Identities=14% Similarity=0.087 Sum_probs=39.4
Q ss_pred eEEEEEEEEeCCCC----CcceEEEEEeeCCCCC---CCcccccccccccccCCCCeEEEEEEecC
Q 010408 411 SLGLHVDIKNTGDM----AGTHTLLVFAKPPAGN---WSPNKQLIGFKKVHVTAGALQSVRLDIHV 469 (511)
Q Consensus 411 ~~~v~v~V~NtG~~----~G~evvQlY~~~~~~~---~~P~k~L~gF~kv~L~pGe~~~v~~~l~~ 469 (511)
.-.+.+++||+|+. .|-=-|++. +.... ....++-..=+.|.|+||++....|.+..
T Consensus 19 ~~~~~l~~tN~s~~~C~l~G~P~v~~~--~~~g~~~~~~~~~~~~~~~~vtL~PG~sA~a~l~~~~ 82 (131)
T PF14016_consen 19 QRHATLTFTNTSDTPCTLYGYPGVALV--DADGAPLGVPAVREGPPPRPVTLAPGGSAYAGLRWSN 82 (131)
T ss_pred ccEEEEEEEECCCCcEEeccCCcEEEE--CCCCCcCCccccccCCCCCcEEECCCCEEEEEEEEec
Confidence 34788899999986 566666666 32222 22233334566788999999999998876
No 39
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=59.26 E-value=59 Score=35.12 Aligned_cols=47 Identities=13% Similarity=0.126 Sum_probs=34.1
Q ss_pred HHHhCCcceeEeeccCCCC-----ccCccChHHHHHhhhhhcCCCcEEECCCCc
Q 010408 102 CVVEGKVASVMCSYNQVNG-----KPTCADPDILKNTIHGQWRLDGYIVSDCDS 150 (511)
Q Consensus 102 ai~~g~~~sVM~syn~vng-----~pa~~s~~ll~~lLR~e~gF~G~VvSD~~~ 150 (511)
.|+++ .-.+|.+-+++.| ..||.++.+++.+|+-=+.. |.-+..-+.
T Consensus 60 ~iDe~-lvl~f~aP~SFTGEDvvEi~~HGg~~v~~~iL~~~l~~-GaR~AepGE 111 (454)
T COG0486 60 IIDEV-LVLYFKAPNSFTGEDVVEIQCHGGPVVVNLILELLLKL-GARLAEPGE 111 (454)
T ss_pred Eeeee-eEEEEeCCCCcccccEEEEEcCCCHHHHHHHHHHHHHc-CCeecCCCc
Confidence 45666 6688999999988 47899999888888855544 455555544
No 40
>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=58.17 E-value=69 Score=25.72 Aligned_cols=77 Identities=9% Similarity=0.056 Sum_probs=43.7
Q ss_pred eEEEEEEEEe-CCCCCcceEEEEEeeCCCCCCCcccccccccccccCCCCeEEEEEEecCCCCeeEEeCCCCEEecCeEE
Q 010408 411 SLGLHVDIKN-TGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEH 489 (511)
Q Consensus 411 ~~~v~v~V~N-tG~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv~L~pGe~~~v~~~l~~~~~ls~~d~~~~~~~~~G~y 489 (511)
.+++++.+-| .....--.-.++|+...... . .+....+-.|.||++..|+|.+.. +.. +.+..|.+.+..| -
T Consensus 5 ~f~A~i~il~~~~~i~~Gy~~~l~~~t~~~~---~-~i~~i~~~~l~~g~~~~v~i~f~~-~p~-~~e~~grf~lr~g-~ 77 (87)
T cd03708 5 EFEAEILVLHHPTTISPGYQATVHIGSIRQT---A-RIVSIDKDVLRTGDRALVRFRFLY-HPE-YLREGQRLIFREG-R 77 (87)
T ss_pred EEEEEEEEEcCCCcccCCCEeEEEEcCCEEE---E-EEEeccHhhccCCCeEEEEEEECC-CCc-EEccCCeEEEECC-C
Confidence 3556666666 23333334455666554311 1 111111246899999999999643 455 4455567777777 5
Q ss_pred EEEEe
Q 010408 490 SLHIG 494 (511)
Q Consensus 490 ~i~vG 494 (511)
++.+|
T Consensus 78 tva~G 82 (87)
T cd03708 78 TKGVG 82 (87)
T ss_pred cEEEE
Confidence 66666
No 41
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=55.67 E-value=33 Score=26.16 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=18.5
Q ss_pred ChhHHHHHHHHHHhC-CCCEEEEEe
Q 010408 246 PGRQQELVSRVAKAS-RGPVVLVLM 269 (511)
Q Consensus 246 p~~q~~Li~~va~~~-~kpvVvVl~ 269 (511)
...|..|.+++.... ++|+++|++
T Consensus 31 ie~Q~~L~~~ik~~F~~~P~i~V~n 55 (58)
T PF06858_consen 31 IEEQLSLFKEIKPLFPNKPVIVVLN 55 (58)
T ss_dssp HHHHHHHHHHHHHHTTTS-EEEEE-
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 568999999998876 789888775
No 42
>COG2003 RadC DNA repair proteins [DNA replication, recombination, and repair]
Probab=52.03 E-value=27 Score=34.09 Aligned_cols=100 Identities=17% Similarity=0.260 Sum_probs=67.4
Q ss_pred CCHHHHHHHHHHHHHHHhcCC------CCCCcEEEeecccccCCccCCCCCCccccccccCHhHHHhhcCHHHHHHHHhC
Q 010408 33 EDPVLTGKYAASYVRGLQGNT------GSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEG 106 (511)
Q Consensus 33 EDP~l~~~~a~a~v~G~Q~~~------~~~~~V~a~~KHF~g~g~~~~~~~~r~~~~~~~s~~~L~e~~L~PF~~ai~~g 106 (511)
.+|.-+..+-.+...+.+... ...+.+++.--=|.|- .+ .+.+.+|+. |+.|++..
T Consensus 104 ~sp~~~~~~l~~~l~~~~~E~f~vL~Ld~qnrlI~~e~lf~GT-------i~----~s~V~PREI-------~k~Al~~n 165 (224)
T COG2003 104 TSPEAVAEYLRAELGGEEREHFVVLYLDSQNRLIATETLFIGT-------LN----VSEVHPREI-------FKEALKYN 165 (224)
T ss_pred CCHHHHHHHHHHHhhhhHHHHHHHHHhcCcCceecceeEEeee-------cc----cceecHHHH-------HHHHHHhc
Confidence 467777777777776766543 2334555554444431 01 134555554 78899987
Q ss_pred CcceeEeeccCCCCccC-ccChHHHHHhhhhhcCCCcEEECCCCcc
Q 010408 107 KVASVMCSYNQVNGKPT-CADPDILKNTIHGQWRLDGYIVSDCDSV 151 (511)
Q Consensus 107 ~~~sVM~syn~vng~pa-~~s~~ll~~lLR~e~gF~G~VvSD~~~~ 151 (511)
+.+||++||--.|-|. +....++|.-|++-.++-|+.+=|=.-+
T Consensus 166 -AaavIlaHNHPSGd~~PS~aD~~iT~rl~~a~~ll~I~vLDHiIi 210 (224)
T COG2003 166 -AAAVILAHNHPSGDPTPSRADILITERLKEAGKLLGIRLLDHIII 210 (224)
T ss_pred -chhhheeccCCCCCCCcCHHHHHHHHHHHHHHHhcCceeeeeEEe
Confidence 7899999999988654 3456688999999999999877775433
No 43
>COG1160 Predicted GTPases [General function prediction only]
Probab=50.78 E-value=44 Score=35.93 Aligned_cols=46 Identities=26% Similarity=0.352 Sum_probs=32.1
Q ss_pred HHHHHHHhhCCEEEEEeccCCCCccccCCCCCCCCChhHHHHHHHHHHhCCCCEEEEEe
Q 010408 211 GAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLM 269 (511)
Q Consensus 211 ~~a~~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~va~~~~kpvVvVl~ 269 (511)
+++..++.+||++|+++-.. + .+.....++.+-|. ..+||+|+|++
T Consensus 75 ~Qa~~Ai~eADvilfvVD~~-----~-------Git~~D~~ia~~Lr-~~~kpviLvvN 120 (444)
T COG1160 75 EQALIAIEEADVILFVVDGR-----E-------GITPADEEIAKILR-RSKKPVILVVN 120 (444)
T ss_pred HHHHHHHHhCCEEEEEEeCC-----C-------CCCHHHHHHHHHHH-hcCCCEEEEEE
Confidence 56677889999999999321 1 23444555666665 56789999987
No 44
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=50.46 E-value=12 Score=38.61 Aligned_cols=56 Identities=23% Similarity=0.373 Sum_probs=33.4
Q ss_pred HHHhhCCEEEEEeccCCCCccccCCCCCCCCChhH----HHHHHHHHHhCCCCEEEEEeCCceEEc
Q 010408 215 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDV 276 (511)
Q Consensus 215 ~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q----~~Li~~va~~~~kpvVvVl~~g~P~~l 276 (511)
+..++||+||++.|... .+|.+|.++ -... .++++++.+.+++..++++. ++|+|+
T Consensus 75 ~~~~daDvVVitAG~~~---k~g~tR~dl--l~~Na~i~~~i~~~i~~~~~~~~iiivv-sNPvDv 134 (323)
T TIGR01759 75 EAFKDVDAALLVGAFPR---KPGMERADL--LSKNGKIFKEQGKALNKVAKKDVKVLVV-GNPANT 134 (323)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHH--HHHHHHHHHHHHHHHHhhCCCCeEEEEe-CCcHHH
Confidence 55789999999998643 345555432 2222 34555666544424555554 599976
No 45
>PF08530 PepX_C: X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain; InterPro: IPR013736 This domain is found at the C terminus of cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). The domain, which is a beta sandwich, is also found in serine peptidases belonging to MEROPS peptidase family S15: Xaa-Pro dipeptidyl-peptidases. Members of this entry, that are not characterised as peptidases, show extensive low-level similarity to the Xaa-Pro dipeptidyl-peptidases. ; GO: 0008239 dipeptidyl-peptidase activity; PDB: 2B4K_D 1RYY_F 2B9V_O 1NX9_B 3PUH_B 3I2I_A 3I2G_A 1JU4_A 3I2K_A 1L7R_A ....
Probab=47.19 E-value=82 Score=30.07 Aligned_cols=56 Identities=11% Similarity=0.183 Sum_probs=32.0
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEeeCCCCCCCccccccccccc----------ccCCCCeEEEEEEecC
Q 010408 411 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKV----------HVTAGALQSVRLDIHV 469 (511)
Q Consensus 411 ~~~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv----------~L~pGe~~~v~~~l~~ 469 (511)
..++++.|+=++. ++.=+|+|+--+|.+..+++.. |..|+ .|+|||..+++|+|.+
T Consensus 97 ~~~l~L~vs~~~~-d~~l~v~L~dv~pdG~~~~it~--G~l~~s~r~~~~~~~~~~pg~~~~~~i~L~p 162 (218)
T PF08530_consen 97 PPSLRLWVSSDAP-DADLFVRLSDVDPDGTSTLITR--GWLRASHRESDEKPEPLEPGEPYDVTIELQP 162 (218)
T ss_dssp EEEEEEEEEESSS-S-EEEEEEEEEETTSSEEEEEE--EEEEGGGSSCSSST----TT-EEEEEEEEEE
T ss_pred ceEEEEEEEecCC-CcEEEEEEEEeCCCCCEEEccc--eEEEcccccCccccccCCCCcEEEEEEEEch
Confidence 4566666664433 5566677776666654333332 33333 4899999999999986
No 46
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=46.70 E-value=1e+02 Score=29.15 Aligned_cols=83 Identities=14% Similarity=0.091 Sum_probs=50.2
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEe-eCCCCCCCccccccccc--c-cccCCCCeEEEEEEecCCCCeeEEeCCC---CEE
Q 010408 411 SLGLHVDIKNTGDMAGTHTLLVFA-KPPAGNWSPNKQLIGFK--K-VHVTAGALQSVRLDIHVCKHLSVVDKFG---IRR 483 (511)
Q Consensus 411 ~~~v~v~V~NtG~~~G~evvQlY~-~~~~~~~~P~k~L~gF~--k-v~L~pGe~~~v~~~l~~~~~ls~~d~~~---~~~ 483 (511)
.++|+++|.|.|+-+...|. |.= +.|... -.-..|=. + =+|+||++.+-++.|.+ +....++-.. .+.
T Consensus 39 ~v~V~~~iyN~G~~~A~dV~-l~D~~fp~~~---F~lvsG~~s~~~~~i~pg~~vsh~~vv~p-~~~G~f~~~~a~VtY~ 113 (181)
T PF05753_consen 39 DVTVTYTIYNVGSSAAYDVK-LTDDSFPPED---FELVSGSLSASWERIPPGENVSHSYVVRP-KKSGYFNFTPAVVTYR 113 (181)
T ss_pred EEEEEEEEEECCCCeEEEEE-EECCCCCccc---cEeccCceEEEEEEECCCCeEEEEEEEee-eeeEEEEccCEEEEEE
Confidence 69999999999998766653 322 122111 00112211 1 15899999999999998 7777776543 244
Q ss_pred ecCeEEEEEEeCCCc
Q 010408 484 IPMGEHSLHIGDLKH 498 (511)
Q Consensus 484 ~~~G~y~i~vG~ss~ 498 (511)
.+.+.=.+.++.|+.
T Consensus 114 ~~~~~~~~~~a~Ss~ 128 (181)
T PF05753_consen 114 DSEGAKELQVAYSSP 128 (181)
T ss_pred CCCCCceeEEEEecC
Confidence 445544455554433
No 47
>PRK13211 N-acetylglucosamine-binding protein A; Reviewed
Probab=46.44 E-value=81 Score=34.44 Aligned_cols=59 Identities=29% Similarity=0.402 Sum_probs=44.0
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEeeCCCCCCCcccccccccccccCCCCeEEEEEEecCCCCeeEEeCCCCEEecCeEEE
Q 010408 411 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHS 490 (511)
Q Consensus 411 ~~~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv~L~pGe~~~v~~~l~~~~~ls~~d~~~~~~~~~G~y~ 490 (511)
.++|.++|+-+|++ -|.+||-+.. ++.+++.+..|.-+. +.|+|.|.. +++|.|.
T Consensus 328 ~~~i~ftv~a~g~~----~vta~V~d~~------g~~~~~~~~~v~d~s-~~vtL~Ls~--------------~~AG~y~ 382 (478)
T PRK13211 328 AATLDFTVTATGDM----NVEATVYNHD------GEALGSKSQTVNDGS-QSVSLDLSK--------------LKAGHHM 382 (478)
T ss_pred cEEEEEEEEeccce----EEEEEEEcCC------CCeeeeeeEEecCCc-eeEEEeccc--------------CCCceEE
Confidence 68899999988866 4777776654 377888888888766 888888875 2667777
Q ss_pred EEEe
Q 010408 491 LHIG 494 (511)
Q Consensus 491 i~vG 494 (511)
|.|-
T Consensus 383 Lvv~ 386 (478)
T PRK13211 383 LVVK 386 (478)
T ss_pred EEEE
Confidence 7654
No 48
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=46.13 E-value=14 Score=37.89 Aligned_cols=56 Identities=25% Similarity=0.290 Sum_probs=31.8
Q ss_pred HHHhhCCEEEEEeccCCCCccccCCCCCCCCChhH----HHHHHHHHHhCCCCEEEEEeCCceEEc
Q 010408 215 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDV 276 (511)
Q Consensus 215 ~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q----~~Li~~va~~~~kpvVvVl~~g~P~~l 276 (511)
+..++||+||++.|... .+|.+|.++ -..- +++++++.+.. +|-+++++.++|+|+
T Consensus 56 ~~~~daDiVVitaG~~~---k~g~tR~dl--l~~N~~I~~~i~~~i~~~a-~~~~ivivvtNPvDv 115 (313)
T TIGR01756 56 EAFKDIDCAFLVASVPL---KPGEVRADL--LTKNTPIFKATGEALSEYA-KPTVKVLVIGNPVNT 115 (313)
T ss_pred HHhCCCCEEEECCCCCC---CcCCCHHHH--HHHHHHHHHHHHHHHHhhC-CCCeEEEEeCCchHH
Confidence 45789999999998643 344455432 2222 23455555443 343333334699976
No 49
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=42.79 E-value=57 Score=34.07 Aligned_cols=54 Identities=20% Similarity=0.436 Sum_probs=32.3
Q ss_pred eEEEEEEEEeCCCCCcceEEEE---------EeeC-CCCC---CCcccccc--ccc---ccccCCCCeEEEEEEecC
Q 010408 411 SLGLHVDIKNTGDMAGTHTLLV---------FAKP-PAGN---WSPNKQLI--GFK---KVHVTAGALQSVRLDIHV 469 (511)
Q Consensus 411 ~~~v~v~V~NtG~~~G~evvQl---------Y~~~-~~~~---~~P~k~L~--gF~---kv~L~pGe~~~v~~~l~~ 469 (511)
.++++++|||.|+-+ |.| |+.+ .... ..|. +|. |-+ ..-++|||+++|+++..-
T Consensus 283 ~l~~~~~VTN~g~~~----vrlgEF~TA~vRFlN~~~v~~~~~~yP~-~lla~GL~v~d~~pI~PGETr~v~v~aqd 354 (399)
T TIGR03079 283 ALRVTMEITNNGDQV----ISIGEFTTAGIRFMNANGVRVLDPDYPR-ELLAEGLEVDDQSAIAPGETVEVKMEAKD 354 (399)
T ss_pred EEEEEEEEEcCCCCc----eEEEeEeecceEeeCcccccccCCCChH-HHhhccceeCCCCCcCCCcceEEEEEEeh
Confidence 689999999999754 222 2222 1111 2332 322 221 224899999999998763
No 50
>PF06205 GT36_AF: Glycosyltransferase 36 associated family ; InterPro: IPR010403 This domain is found in the NvdB protein (P20471 from SWISSPROT), which is involved in the production of beta-(1-->2)-glucan.; PDB: 1V7V_A 1V7W_A 1V7X_A 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A 3QG0_B 3AFJ_A ....
Probab=42.17 E-value=18 Score=29.92 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=18.1
Q ss_pred CCcccccccccccccCCCCeEEEEEEecC
Q 010408 441 WSPNKQLIGFKKVHVTAGALQSVRLDIHV 469 (511)
Q Consensus 441 ~~P~k~L~gF~kv~L~pGe~~~v~~~l~~ 469 (511)
..|.--|+- +|.|+|||+++|.|-+-.
T Consensus 58 ~Dpc~al~~--~v~L~PGe~~~v~f~lG~ 84 (90)
T PF06205_consen 58 LDPCAALQV--RVTLEPGEEKEVVFLLGA 84 (90)
T ss_dssp S-EEEEEEE--EEEE-TT-EEEEEEEEEE
T ss_pred cCeEEEEEE--EEEECCCCEEEEEEEEEE
Confidence 456656663 788999999999998753
No 51
>PRK05442 malate dehydrogenase; Provisional
Probab=42.10 E-value=16 Score=37.80 Aligned_cols=56 Identities=20% Similarity=0.265 Sum_probs=31.5
Q ss_pred HHHhhCCEEEEEeccCCCCccccCCCCCCCCChhHHH----HHHHHHHhCCCCEEEEEeCCceEEc
Q 010408 215 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQE----LVSRVAKASRGPVVLVLMCGGPVDV 276 (511)
Q Consensus 215 ~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~----Li~~va~~~~kpvVvVl~~g~P~~l 276 (511)
+..++||+||++.|... .+|.+|.++ -....+ +++++.+..++..++++ .++|+|+
T Consensus 76 ~~~~daDiVVitaG~~~---k~g~tR~dl--l~~Na~i~~~i~~~i~~~~~~~~iiiv-vsNPvDv 135 (326)
T PRK05442 76 VAFKDADVALLVGARPR---GPGMERKDL--LEANGAIFTAQGKALNEVAARDVKVLV-VGNPANT 135 (326)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHH--HHHHHHHHHHHHHHHHHhCCCCeEEEE-eCCchHH
Confidence 55789999999998543 344455432 222233 44455542322344444 4599976
No 52
>PRK13556 azoreductase; Provisional
Probab=42.08 E-value=73 Score=30.35 Aligned_cols=38 Identities=11% Similarity=0.095 Sum_probs=27.8
Q ss_pred HHHHHHHHhhCCEEEEEeccCCCCccccCCCCCCCCChhHHHHHHHHHH
Q 010408 210 IGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAK 258 (511)
Q Consensus 210 ~~~a~~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~va~ 258 (511)
.++..+..++||.+|++.= --++.+|.--..+|+.+..
T Consensus 80 ~~~~~~~l~~AD~iVi~~P-----------~yn~~~Pa~LK~~iD~v~~ 117 (208)
T PRK13556 80 ADKYLNQFLEADKVVFAFP-----------LWNFTIPAVLHTYIDYLNR 117 (208)
T ss_pred HHHHHHHHHHCCEEEEecc-----------ccccCCcHHHHHHHHHHhc
Confidence 3455577889999999872 2356778888888888874
No 53
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=41.81 E-value=1.7e+02 Score=30.29 Aligned_cols=122 Identities=16% Similarity=0.174 Sum_probs=63.3
Q ss_pred HHHHHHHhCCcceeEeeccCCCCccCccChHHHHHhhhhhcCCCcEEECCCCcccccccCCCCCCCHHHH--HHHchhcc
Q 010408 98 PFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEA--AADAIKAG 175 (511)
Q Consensus 98 PF~~ai~~g~~~sVM~syn~vng~pa~~s~~ll~~lLR~e~gF~G~VvSD~~~~~~~~~~~~~~~~~~~a--~~~ai~AG 175 (511)
-|++.-++|..-.++++|... +.-|=++.|+|-+.|.|+.+|..+-......-+.++. ..+++..|
T Consensus 26 ~l~~~k~~g~kivmlTAyD~~------------sA~i~d~aGvD~ILVGDSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rg 93 (332)
T PLN02424 26 TLRQKYRRGEPITMVTAYDYP------------SAVHVDSAGIDVCLVGDSAAMVVHGHDTTLPITLDEMLVHCRAVARG 93 (332)
T ss_pred HHHHHHhCCCcEEEEecCCHH------------HHHHHHHcCCCEEEECCcHHHHhcCCCCCCCcCHHHHHHHHHHHhcc
Confidence 355544566676777777643 2344568999999999998875442111111223332 34566666
Q ss_pred c---------c--CCccchhhhhhhheeeeccCCccccccCCc-chHHHHHHHHhhCCEEEE-EeccCC
Q 010408 176 V---------A--CGYTTPLQGISRYAKTIHQAGCFGVACNGN-QLIGAAEVAARQADATVL-VMGLDQ 231 (511)
Q Consensus 176 ~---------~--~~~~~~l~~~~~~~~~~~~~G~~~~~~~~~-~~~~~a~~~a~~aD~vVv-~vG~~~ 231 (511)
. | ++..+|-++++...++..+.|+..+...+. ....++++.+.++-+-|+ -+|.++
T Consensus 94 a~~a~vVaDmPfgSY~~s~e~av~nA~rl~~eaGa~aVKlEGg~~~~~~~I~~l~~~GIPV~gHiGLtP 162 (332)
T PLN02424 94 ANRPLLVGDLPFGSYESSTDQAVESAVRMLKEGGMDAVKLEGGSPSRVTAAKAIVEAGIAVMGHVGLTP 162 (332)
T ss_pred CCCCEEEeCCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEECCCcHHHHHHHHHHHHcCCCEEEeecccc
Confidence 1 2 233566666655544433445544443322 223344444445444444 345444
No 54
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=41.66 E-value=95 Score=30.34 Aligned_cols=52 Identities=21% Similarity=0.176 Sum_probs=33.2
Q ss_pred EEEEEEEeCCCCCcceEEEEEeeCCCCCCCccccccccc-ccccCCCCeEEEEEEec
Q 010408 413 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFK-KVHVTAGALQSVRLDIH 468 (511)
Q Consensus 413 ~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~-kv~L~pGe~~~v~~~l~ 468 (511)
.++++|+|+|+. .-.+|.-+.+.... +...+.-.= -..|+||+++.|++-..
T Consensus 41 ~~si~v~N~~~~--p~lvQ~wv~~~~~~--~~~~fivtPPl~rl~pg~~q~vRii~~ 93 (230)
T PRK09918 41 EGSINVKNTDSN--PILLYTTLVDLPED--KSKLLLVTPPVARVEPGQSQQVRFILK 93 (230)
T ss_pred eEEEEEEcCCCC--cEEEEEEEecCCCC--CCCCEEEcCCeEEECCCCceEEEEEEC
Confidence 478888999986 48889988764322 111111111 23589999999997643
No 55
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=40.95 E-value=25 Score=29.75 Aligned_cols=52 Identities=17% Similarity=0.125 Sum_probs=30.7
Q ss_pred EEEEEEEEeCCCCCcceEEEEEeeCC---C-CC---CCcc---c--ccccccccccCCCCeEEEEEEe
Q 010408 412 LGLHVDIKNTGDMAGTHTLLVFAKPP---A-GN---WSPN---K--QLIGFKKVHVTAGALQSVRLDI 467 (511)
Q Consensus 412 ~~v~v~V~NtG~~~G~evvQlY~~~~---~-~~---~~P~---k--~L~gF~kv~L~pGe~~~v~~~l 467 (511)
-+++++|+|||+|+ +|+=-..- . .. +|.. + ..-.=+-|+.+||+.|+|++-=
T Consensus 20 ~~~~i~V~NtGDRP----IQVGSHfHF~EvN~aL~FDR~~a~G~RLdIpagTAVRFEPG~~k~V~LV~ 83 (106)
T COG0832 20 PTVTIEVANTGDRP----IQVGSHFHFFEVNRALSFDREKAYGMRLDIPAGTAVRFEPGDEKEVELVP 83 (106)
T ss_pred cceEEEEeecCCCc----eEeecceeehhhCcceeechhhhcceEecccCCceEeeCCCCccEEEEEE
Confidence 46788899999998 77632211 0 00 1110 0 1122245678999999998753
No 56
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=40.58 E-value=24 Score=23.16 Aligned_cols=17 Identities=24% Similarity=0.522 Sum_probs=12.9
Q ss_pred HHHHHHHhCCcceeEeec
Q 010408 98 PFKACVVEGKVASVMCSY 115 (511)
Q Consensus 98 PF~~ai~~g~~~sVM~sy 115 (511)
-++.+++.| |+.|||-|
T Consensus 12 ~~~~~l~~G-VDgI~Td~ 28 (30)
T PF13653_consen 12 SWRELLDLG-VDGIMTDY 28 (30)
T ss_dssp HHHHHHHHT--SEEEES-
T ss_pred HHHHHHHcC-CCEeeCCC
Confidence 468899998 99999965
No 57
>PRK13555 azoreductase; Provisional
Probab=40.24 E-value=72 Score=30.67 Aligned_cols=39 Identities=13% Similarity=0.107 Sum_probs=27.0
Q ss_pred hHHHHHHHHhhCCEEEEEeccCCCCccccCCCCCCCCChhHHHHHHHHHH
Q 010408 209 LIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAK 258 (511)
Q Consensus 209 ~~~~a~~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~va~ 258 (511)
...+..+..+.||.+|++.= --++.+|.--...|+.|..
T Consensus 79 ~~~~~~~~~~~AD~lvi~~P-----------~~n~~~Pa~LK~~iD~v~~ 117 (208)
T PRK13555 79 TVDQYLNQFLEADKVVFAFP-----------LWNFTVPAPLITYISYLSQ 117 (208)
T ss_pred HHHHHHHHHHHcCEEEEEcC-----------cccccchHHHHHHHHHHhc
Confidence 34555677889999999872 2245677777777777763
No 58
>PF00703 Glyco_hydro_2: Glycosyl hydrolases family 2; InterPro: IPR006102 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities: beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This entry describes the immunoglobulin-like beta-sandwich domain [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3FN9_C 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3GM8_A 3HN3_E 1BHG_A 2VZU_A 2X09_A ....
Probab=40.08 E-value=1.2e+02 Score=24.81 Aligned_cols=63 Identities=16% Similarity=0.169 Sum_probs=40.6
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEeeCCCCCCCcccccccccccccCCCCeEEEEEEecCCCCeeEEeC
Q 010408 411 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDK 478 (511)
Q Consensus 411 ~~~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv~L~pGe~~~v~~~l~~~~~ls~~d~ 478 (511)
.+++.+++.|.+.....-.+++.+.+..... ... .-..+.+..++...+.+++.. .....|+.
T Consensus 19 ~v~v~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~i-~~~~lW~p 81 (110)
T PF00703_consen 19 KVSVEVEVRNESNKPLDVTVRVRLFDPEGKK--VVT--QSPVVSLSAPGQARITLTIEI-PNPKLWSP 81 (110)
T ss_dssp EEEEEEEEEEESSSSCEEEEEEEEEETTSEE--EEE--EEEEEEECCCCEEEEEEEEEE-ESS-BBES
T ss_pred EEEEEEEEEeCCCCcEEEEEEEEEECCCCCE--EEE--eeeEEEecCCceeEEEEEEEc-CCCCCcCC
Confidence 5777788899999999999999988875431 101 122334566666666555554 45677776
No 59
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=39.33 E-value=16 Score=38.75 Aligned_cols=56 Identities=18% Similarity=0.220 Sum_probs=31.0
Q ss_pred HHHhhCCEEEEEeccCCCCccccCCCCCCCCChhHHHH----HHHHHHhCCCCEEEEEeCCceEEc
Q 010408 215 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQEL----VSRVAKASRGPVVLVLMCGGPVDV 276 (511)
Q Consensus 215 ~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~L----i~~va~~~~kpvVvVl~~g~P~~l 276 (511)
+..+++|+||++.|... .+|.+|.+ |-..-.++ .++|.+..++. .++++.++|+|+
T Consensus 116 ~~~kdaDIVVitAG~pr---kpg~tR~d--ll~~N~~I~k~i~~~I~~~a~~~-~iviVVsNPvDv 175 (387)
T TIGR01757 116 EVFEDADWALLIGAKPR---GPGMERAD--LLDINGQIFADQGKALNAVASKN-CKVLVVGNPCNT 175 (387)
T ss_pred HHhCCCCEEEECCCCCC---CCCCCHHH--HHHHHHHHHHHHHHHHHHhCCCC-eEEEEcCCcHHH
Confidence 55789999999988643 33445532 22222333 34444423333 444445699976
No 60
>TIGR03352 VI_chp_3 type VI secretion lipoprotein, VC_A0113 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=38.77 E-value=63 Score=29.33 Aligned_cols=24 Identities=13% Similarity=0.309 Sum_probs=21.2
Q ss_pred ccccccccccCCCCeEEEEEEecC
Q 010408 446 QLIGFKKVHVTAGALQSVRLDIHV 469 (511)
Q Consensus 446 ~L~gF~kv~L~pGe~~~v~~~l~~ 469 (511)
.|.+-+++.|.|||+++++++++.
T Consensus 81 ~ll~~~e~~l~PG~~~~~~~~~~~ 104 (146)
T TIGR03352 81 DLIEQDEIILLPGEKRKITITLDP 104 (146)
T ss_pred HHhhcceEEECCCCeeEeeeecCC
Confidence 577788889999999999999986
No 61
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=38.60 E-value=72 Score=31.73 Aligned_cols=54 Identities=22% Similarity=0.249 Sum_probs=36.0
Q ss_pred EEEEEEEeCCCCCcceEEEEEeeCCCCCCCccc----cccccccc-ccCCCCeEEEEEEec
Q 010408 413 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNK----QLIGFKKV-HVTAGALQSVRLDIH 468 (511)
Q Consensus 413 ~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~k----~L~gF~kv-~L~pGe~~~v~~~l~ 468 (511)
.++++|+|+|+. .-.+|..+.+......|.+ .+.-.==+ .|+||+.+.|++-..
T Consensus 45 ~~sl~l~N~~~~--p~LvQsWv~~~~~~~~p~~~~~~pFivtPPlfrl~p~~~q~lRI~~~ 103 (253)
T PRK15249 45 SVDVQLKNNDAI--PYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIYN 103 (253)
T ss_pred ceeEEEEcCCCC--cEEEEEEEeCCCCCCCccccccCcEEEcCCeEEecCCCceEEEEEEc
Confidence 478888999986 5899999865432223322 13333334 489999999997754
No 62
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=37.96 E-value=69 Score=26.56 Aligned_cols=40 Identities=15% Similarity=0.178 Sum_probs=29.8
Q ss_pred HHHHHhhCCEEEEEeccCCCCccccCCCCCCCCChhHHHHHHHHHHhCCCCEEEE
Q 010408 213 AEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLV 267 (511)
Q Consensus 213 a~~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~va~~~~kpvVvV 267 (511)
..+..+.+|+||++++. ....-...+++.++..++|++.+
T Consensus 42 l~~~i~~aD~VIv~t~~---------------vsH~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 42 LPSKIKKADLVIVFTDY---------------VSHNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred HHHhcCCCCEEEEEeCC---------------cChHHHHHHHHHHHHcCCcEEEE
Confidence 34567899999999853 34556678888888888886544
No 63
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=37.13 E-value=81 Score=31.19 Aligned_cols=55 Identities=15% Similarity=0.211 Sum_probs=35.4
Q ss_pred EEEEEEEeCCCCCcceEEEEEeeCCCCCCCcccc---ccccccc-ccCCCCeEEEEEEecC
Q 010408 413 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQ---LIGFKKV-HVTAGALQSVRLDIHV 469 (511)
Q Consensus 413 ~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~k~---L~gF~kv-~L~pGe~~~v~~~l~~ 469 (511)
.++++|+|+|+. --.+|..+.+......|.+. +.-.--+ .|+||+.+.|++-...
T Consensus 42 ~~sv~l~N~~~~--p~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl~p~~~q~lRIi~~~ 100 (246)
T PRK09926 42 DVNVRLENKGNN--PLLVQSWLDTGDDNAEPGSIKVPFTATPPVSRIDPKRGQTIKLMYTA 100 (246)
T ss_pred eEEEEEEeCCCC--cEEEEEEecCCCCccCccccCCCEEEcCCeEEECCCCccEEEEEeCC
Confidence 578889999987 59999999643322223221 2222223 4889999999977543
No 64
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=35.99 E-value=1.4e+02 Score=29.22 Aligned_cols=55 Identities=11% Similarity=0.117 Sum_probs=34.5
Q ss_pred EEEEEEEeCCCCCcceEEEEEeeCCCCCCCccccccccccc-ccCCCCeEEEEEEecC
Q 010408 413 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKV-HVTAGALQSVRLDIHV 469 (511)
Q Consensus 413 ~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv-~L~pGe~~~v~~~l~~ 469 (511)
.++++|+|+|+. .-.+|..+.+......+...+.---=+ +|+||++++|++-...
T Consensus 36 ~~si~i~N~~~~--p~LvQsWv~~~~~~~~~~~pFivtPPl~rl~p~~~q~lRI~~~~ 91 (226)
T PRK15295 36 ESSINVENKDSK--ANLVQSWLSVVDPQVTNKQAFIITPPLFRLDAGQKNSIRVIRSG 91 (226)
T ss_pred eeEEEEEeCCCC--cEEEEEEEeCCCCCCCCCCCEEEcCCeEEECCCCceEEEEEECC
Confidence 578899999986 488999997643211111111111112 4789999999987653
No 65
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=35.14 E-value=29 Score=35.81 Aligned_cols=56 Identities=21% Similarity=0.361 Sum_probs=32.4
Q ss_pred HHHhhCCEEEEEeccCCCCccccCCCCCCCCChhH----HHHHHHHHHhCCCCEEEEEeCCceEEc
Q 010408 215 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDV 276 (511)
Q Consensus 215 ~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q----~~Li~~va~~~~kpvVvVl~~g~P~~l 276 (511)
+..+++|+||++.|... .++.+|.++ -... .++..++.+..++..++++. ++|+|+
T Consensus 72 ~~~~~aDiVVitAG~~~---~~g~tR~dl--l~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~ 131 (323)
T cd00704 72 EAFKDVDVAILVGAFPR---KPGMERADL--LRKNAKIFKEQGEALNKVAKPTVKVLVV-GNPANT 131 (323)
T ss_pred HHhCCCCEEEEeCCCCC---CcCCcHHHH--HHHhHHHHHHHHHHHHHhCCCCeEEEEe-CCcHHH
Confidence 56789999999998643 334455432 2222 33455555542344554544 699975
No 66
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=34.27 E-value=33 Score=35.35 Aligned_cols=56 Identities=21% Similarity=0.264 Sum_probs=32.0
Q ss_pred HHHhhCCEEEEEeccCCCCccccCCCCCCCCChhHHH----HHHHHHHhCCCCEEEEEeCCceEEc
Q 010408 215 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQE----LVSRVAKASRGPVVLVLMCGGPVDV 276 (511)
Q Consensus 215 ~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~----Li~~va~~~~kpvVvVl~~g~P~~l 276 (511)
+..++||+||++.|... .+|.+|.++ -....+ +..+|.+.+.+..++++ .++|+|+
T Consensus 74 ~~~~daDivvitaG~~~---k~g~tR~dl--l~~N~~i~~~i~~~i~~~~~~~~iiiv-vsNPvD~ 133 (322)
T cd01338 74 VAFKDADWALLVGAKPR---GPGMERADL--LKANGKIFTAQGKALNDVASRDVKVLV-VGNPCNT 133 (322)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHH--HHHHHHHHHHHHHHHHhhCCCCeEEEE-ecCcHHH
Confidence 55789999999998643 244455432 222233 44455543322444444 4699976
No 67
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=34.08 E-value=1.2e+02 Score=27.29 Aligned_cols=16 Identities=13% Similarity=0.318 Sum_probs=14.0
Q ss_pred ccCCCCeEEEEEEecC
Q 010408 454 HVTAGALQSVRLDIHV 469 (511)
Q Consensus 454 ~L~pGe~~~v~~~l~~ 469 (511)
.|+|||+++++|..+.
T Consensus 95 ~I~pGet~TitF~adK 110 (135)
T TIGR03096 95 VIKAGETKTISFKADK 110 (135)
T ss_pred EECCCCeEEEEEECCC
Confidence 4899999999998875
No 68
>PLN02303 urease
Probab=33.74 E-value=55 Score=38.02 Aligned_cols=50 Identities=22% Similarity=0.321 Sum_probs=30.8
Q ss_pred EEEEEEEeCCCCCcceEEEEEeeCCCCCCCc-----ccccccc-------cccccCCCCeEEEEEE
Q 010408 413 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQLIGF-------KKVHVTAGALQSVRLD 466 (511)
Q Consensus 413 ~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P-----~k~L~gF-------~kv~L~pGe~~~v~~~ 466 (511)
+++++|+|||+|+ +|+=-...--...| ...=.|| +-|+.+|||+++|++.
T Consensus 151 ~~~l~v~n~gdrp----iqvgSH~hf~e~N~aL~FdR~~a~G~rLdipaGtavRfePG~~~~V~lv 212 (837)
T PLN02303 151 AVKLKVTNTGDRP----IQVGSHYHFIETNPYLVFDRRKAYGMRLNIPAGTAVRFEPGETKTVTLV 212 (837)
T ss_pred eEEEEEeeCCCCc----eEeccccchHhcCchhhccHHHhcCccccCCCCCeEeECCCCeeEEEEE
Confidence 5889999999998 88733221110111 1111122 3467899999999986
No 69
>PLN02591 tryptophan synthase
Probab=33.65 E-value=1.9e+02 Score=28.79 Aligned_cols=79 Identities=16% Similarity=0.271 Sum_probs=42.6
Q ss_pred HHHHHHHhhCCEEEEEeccCCCCccccCCCCCCCCChhHHHHHHHHHHhCCCCEEEEEeC-CceEEccCccCCCC-ccEE
Q 010408 211 GAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMC-GGPVDVSFAKNDPR-IGAI 288 (511)
Q Consensus 211 ~~a~~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~va~~~~kpvVvVl~~-g~P~~l~~~~~~~~-v~Ai 288 (511)
+...+.++.++--|.+++... ..+. + -.++..-.++++.+.+.++.|++ |=+. ..|=++..+. .. ++++
T Consensus 145 ~ri~~ia~~~~gFIY~Vs~~G-vTG~---~--~~~~~~~~~~i~~vk~~~~~Pv~-vGFGI~~~e~v~~~~--~~GADGv 215 (250)
T PLN02591 145 ERMKAIAEASEGFVYLVSSTG-VTGA---R--ASVSGRVESLLQELKEVTDKPVA-VGFGISKPEHAKQIA--GWGADGV 215 (250)
T ss_pred HHHHHHHHhCCCcEEEeeCCC-CcCC---C--cCCchhHHHHHHHHHhcCCCceE-EeCCCCCHHHHHHHH--hcCCCEE
Confidence 344455556666667765421 1121 2 23567777888998877777744 3332 2244443321 23 6666
Q ss_pred EEecCCChhHHHHHHHHH
Q 010408 289 LWVGYPGQAGGAAIADVL 306 (511)
Q Consensus 289 l~a~~pG~e~g~AiAdVL 306 (511)
|. |.|+.+.+
T Consensus 216 IV--------GSalVk~i 225 (250)
T PLN02591 216 IV--------GSAMVKAL 225 (250)
T ss_pred EE--------CHHHHHhh
Confidence 65 45666655
No 70
>PRK15218 fimbrial chaperone protein PegB; Provisional
Probab=33.13 E-value=1.5e+02 Score=28.93 Aligned_cols=55 Identities=16% Similarity=0.263 Sum_probs=37.4
Q ss_pred EEEEEEEeCCCCCcceEEEEEeeCCCCCCCccccccccccc----ccCCCCeEEEEEEecC
Q 010408 413 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKV----HVTAGALQSVRLDIHV 469 (511)
Q Consensus 413 ~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv----~L~pGe~~~v~~~l~~ 469 (511)
.++++|+|+++. ...||..+.+......|.+.=.-|-=+ +|+||+.+++++....
T Consensus 35 ~~si~i~N~~~~--pyLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~~ 93 (226)
T PRK15218 35 DITVQLMNDGKR--SSLIQAWIDNGDTSLPPEKLQVPFIMTPPVIRVAANSGQQLKIKKLA 93 (226)
T ss_pred EEEEEEEcCCCC--cEEEEEEEeCCCCCCCcccccCCEEECCCeEEECCCCceEEEEEECC
Confidence 578889999987 599999998754322221110124332 4899999999998653
No 71
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=33.12 E-value=32 Score=35.50 Aligned_cols=56 Identities=21% Similarity=0.337 Sum_probs=30.9
Q ss_pred HHHhhCCEEEEEeccCCCCccccCCCCCCCCChhH----HHHHHHHHHhCCCCEEEEEeCCceEEc
Q 010408 215 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDV 276 (511)
Q Consensus 215 ~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q----~~Li~~va~~~~kpvVvVl~~g~P~~l 276 (511)
+..+++|+||++.|... .++.+|.+ +-..- .++.+.+.+..++..++++. .+|+|+
T Consensus 74 ~~l~~aDiVI~tAG~~~---~~~~~R~~--l~~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~ 133 (325)
T cd01336 74 EAFKDVDVAILVGAMPR---KEGMERKD--LLKANVKIFKEQGEALDKYAKKNVKVLVV-GNPANT 133 (325)
T ss_pred HHhCCCCEEEEeCCcCC---CCCCCHHH--HHHHHHHHHHHHHHHHHHhCCCCeEEEEe-cCcHHH
Confidence 45679999999998643 23334432 22222 23445555443334454544 489976
No 72
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=32.99 E-value=26 Score=35.61 Aligned_cols=57 Identities=21% Similarity=0.323 Sum_probs=32.6
Q ss_pred HHHhhCCEEEEEeccCCCCccccCCCCCCCCCh--hHHHHHHHHHHhCCCCEEEEEeCCceEEc
Q 010408 215 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPG--RQQELVSRVAKASRGPVVLVLMCGGPVDV 276 (511)
Q Consensus 215 ~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~--~q~~Li~~va~~~~kpvVvVl~~g~P~~l 276 (511)
+..++||++|++.|... .++.+|.++-.-. --.++.+++.+.+ +..+ |++.++|.++
T Consensus 62 ~~l~~aDiVIitag~p~---~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~-viv~sNP~d~ 120 (300)
T cd00300 62 ADAADADIVVITAGAPR---KPGETRLDLINRNAPILRSVITNLKKYG-PDAI-ILVVSNPVDI 120 (300)
T ss_pred HHhCCCCEEEEcCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeE-EEEccChHHH
Confidence 46789999999998653 3444564322111 1233455555444 3444 4445699876
No 73
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=32.90 E-value=72 Score=27.11 Aligned_cols=58 Identities=17% Similarity=0.148 Sum_probs=27.2
Q ss_pred eEEEEEEEEeCCCCCcce-EEEEEeeCCCCC-CCcccc----cccccccccCCCCeEEEEEEec
Q 010408 411 SLGLHVDIKNTGDMAGTH-TLLVFAKPPAGN-WSPNKQ----LIGFKKVHVTAGALQSVRLDIH 468 (511)
Q Consensus 411 ~~~v~v~V~NtG~~~G~e-vvQlY~~~~~~~-~~P~k~----L~gF~kv~L~pGe~~~v~~~l~ 468 (511)
-+.|+++|+|+|+-+-.- ..+..+.+.... -.+... ...+--..|+||++.+..+-..
T Consensus 37 fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~ 100 (123)
T PF11611_consen 37 FVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFE 100 (123)
T ss_dssp EEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEE
T ss_pred EEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEEE
Confidence 689999999999865431 114444444432 112111 1114455799999887655443
No 74
>PRK05086 malate dehydrogenase; Provisional
Probab=32.76 E-value=33 Score=35.17 Aligned_cols=56 Identities=25% Similarity=0.329 Sum_probs=32.1
Q ss_pred HHHhhCCEEEEEeccCCCCccccCCCCCCCCCh---hHHHHHHHHHHhCCCCEEEEEeCCceEEc
Q 010408 215 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPG---RQQELVSRVAKASRGPVVLVLMCGGPVDV 276 (511)
Q Consensus 215 ~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~---~q~~Li~~va~~~~kpvVvVl~~g~P~~l 276 (511)
+..+++|+||++.|... .++.+|.++ |.. --.++++++.+.+.+ .+|++..+|+|+
T Consensus 65 ~~l~~~DiVIitaG~~~---~~~~~R~dl-l~~N~~i~~~ii~~i~~~~~~--~ivivvsNP~D~ 123 (312)
T PRK05086 65 PALEGADVVLISAGVAR---KPGMDRSDL-FNVNAGIVKNLVEKVAKTCPK--ACIGIITNPVNT 123 (312)
T ss_pred HHcCCCCEEEEcCCCCC---CCCCCHHHH-HHHHHHHHHHHHHHHHHhCCC--eEEEEccCchHH
Confidence 44578999999999643 223344332 122 234566677665433 344445689964
No 75
>PRK00170 azoreductase; Reviewed
Probab=32.38 E-value=1.1e+02 Score=28.70 Aligned_cols=38 Identities=16% Similarity=0.141 Sum_probs=27.5
Q ss_pred hHHHHHHHHhhCCEEEEEeccCCCCccccCCCCCCCCChhHHHHHHHHH
Q 010408 209 LIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVA 257 (511)
Q Consensus 209 ~~~~a~~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~va 257 (511)
+..+..+...+||.+|++.= --++.+|+.-..+|+.+.
T Consensus 76 ~~~~l~~~i~~AD~iV~~sP-----------~y~~~~pa~LK~~iDrv~ 113 (201)
T PRK00170 76 LSDELLEEFLAADKIVIAAP-----------MYNFSIPTQLKAYIDLIA 113 (201)
T ss_pred HHHHHHHHHHHCCEEEEeec-----------ccccCCcHHHHHHHHhhe
Confidence 45666778899999999862 234567877777787764
No 76
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=32.07 E-value=1.2e+02 Score=29.57 Aligned_cols=54 Identities=11% Similarity=0.168 Sum_probs=34.6
Q ss_pred EEEEEEEeCCCCCcceEEEEEeeCCCCC-CCccccccccccc-ccCCCCeEEEEEEec
Q 010408 413 GLHVDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFKKV-HVTAGALQSVRLDIH 468 (511)
Q Consensus 413 ~v~v~V~NtG~~~G~evvQlY~~~~~~~-~~P~k~L~gF~kv-~L~pGe~~~v~~~l~ 468 (511)
.++++|+|+|+. .-.+|..+.+.... ..+...+.-.=-+ .|+||+++.+++-..
T Consensus 39 ~~sl~l~N~~~~--p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~ 94 (227)
T PRK15299 39 DASISISNSDNV--PYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLRIIRT 94 (227)
T ss_pred EEEEEEEeCCCC--cEEEEEEeecCCCCCCcCCCCEEEcCCeEEECCCCccEEEEEEC
Confidence 578889999986 68999998753211 1111112222233 488999999997754
No 77
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=31.56 E-value=25 Score=38.01 Aligned_cols=56 Identities=18% Similarity=0.226 Sum_probs=31.5
Q ss_pred HHHhhCCEEEEEeccCCCCccccCCCCCCCCChhHH----HHHHHHHHhCCCCEEEEEeCCceEEc
Q 010408 215 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQ----ELVSRVAKASRGPVVLVLMCGGPVDV 276 (511)
Q Consensus 215 ~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q~----~Li~~va~~~~kpvVvVl~~g~P~~l 276 (511)
+..++||+||+..|... .+|.+|.++ -..-. ++.++|.+..++..+ |++.++|+|+
T Consensus 172 e~~kdaDiVVitAG~pr---kpG~tR~dL--l~~N~~I~k~i~~~I~~~a~p~~i-vIVVsNPvDv 231 (444)
T PLN00112 172 EVFQDAEWALLIGAKPR---GPGMERADL--LDINGQIFAEQGKALNEVASRNVK-VIVVGNPCNT 231 (444)
T ss_pred HHhCcCCEEEECCCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhcCCCeE-EEEcCCcHHH
Confidence 45789999999988643 345555432 22222 334455441233444 4444699976
No 78
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=31.35 E-value=35 Score=35.28 Aligned_cols=56 Identities=21% Similarity=0.341 Sum_probs=31.7
Q ss_pred HHHhhCCEEEEEeccCCCCccccCCCCCCCCChhHH----HHHHHHHHhCCCCEEEEEeCCceEEc
Q 010408 215 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQ----ELVSRVAKASRGPVVLVLMCGGPVDV 276 (511)
Q Consensus 215 ~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q~----~Li~~va~~~~kpvVvVl~~g~P~~l 276 (511)
+..+++|+||+..|... .++.+|.+ |-.... +++++|.+..++..++++. ++|+|+
T Consensus 71 ~~~~~aDiVVitAG~~~---~~~~tr~~--ll~~N~~i~k~i~~~i~~~~~~~~iiivv-sNPvDv 130 (324)
T TIGR01758 71 VAFTDVDVAILVGAFPR---KEGMERRD--LLSKNVKIFKEQGRALDKLAKKDCKVLVV-GNPANT 130 (324)
T ss_pred HHhCCCCEEEEcCCCCC---CCCCcHHH--HHHHHHHHHHHHHHHHHhhCCCCeEEEEe-CCcHHH
Confidence 56789999999998643 23334432 222222 3445555432334555554 599976
No 79
>PLN00135 malate dehydrogenase
Probab=30.77 E-value=28 Score=35.70 Aligned_cols=56 Identities=16% Similarity=0.307 Sum_probs=32.3
Q ss_pred HHHhhCCEEEEEeccCCCCccccCCCCCCCCChhH----HHHHHHHHHhCCCCEEEEEeCCceEEc
Q 010408 215 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDV 276 (511)
Q Consensus 215 ~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q----~~Li~~va~~~~kpvVvVl~~g~P~~l 276 (511)
+..++||+||++.|... .+|.+|.++ -... .+++++|.+..++..++++. ++|+|+
T Consensus 54 ~~~~daDiVVitAG~~~---k~g~sR~dl--l~~N~~I~~~i~~~i~~~~~p~aivivv-sNPvDv 113 (309)
T PLN00135 54 EACKGVNIAVMVGGFPR---KEGMERKDV--MSKNVSIYKSQASALEKHAAPDCKVLVV-ANPANT 113 (309)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHH--HHHHHHHHHHHHHHHHHhcCCCeEEEEe-CCcHHH
Confidence 55789999999998653 234455332 1222 34455665522334454444 599976
No 80
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=30.38 E-value=1.6e+02 Score=25.83 Aligned_cols=18 Identities=11% Similarity=0.095 Sum_probs=14.6
Q ss_pred HHHHHHHhhCCEEEEEec
Q 010408 211 GAAEVAARQADATVLVMG 228 (511)
Q Consensus 211 ~~a~~~a~~aD~vVv~vG 228 (511)
.++.+.++.+|++++++-
T Consensus 3 ~~~~~~i~~aD~vl~ViD 20 (141)
T cd01857 3 RQLWRVVERSDIVVQIVD 20 (141)
T ss_pred HHHHHHHhhCCEEEEEEE
Confidence 467788899999999883
No 81
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=30.32 E-value=42 Score=34.36 Aligned_cols=57 Identities=18% Similarity=0.291 Sum_probs=30.8
Q ss_pred HHHhhCCEEEEEeccCCCCccccCCCCCCCCChhHHHH----HHHHHHhCCCCEEEEEeCCceEEc
Q 010408 215 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQEL----VSRVAKASRGPVVLVLMCGGPVDV 276 (511)
Q Consensus 215 ~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~L----i~~va~~~~kpvVvVl~~g~P~~l 276 (511)
+..++||+||++.|... ..|.+|.-+.|-..-.++ ++++.+.+. ..+++ +..+|+|+
T Consensus 64 ~~~~~aDivvitaG~~~---kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p-~~i~i-vvsNPvDv 124 (307)
T cd05290 64 DDCADADIIVITAGPSI---DPGNTDDRLDLAQTNAKIIREIMGNITKVTK-EAVII-LITNPLDI 124 (307)
T ss_pred HHhCCCCEEEECCCCCC---CCCCCchHHHHHHHHHHHHHHHHHHHHHhCC-CeEEE-EecCcHHH
Confidence 55789999999998643 223332112233333333 445554433 34433 44689886
No 82
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=29.53 E-value=53 Score=34.73 Aligned_cols=60 Identities=25% Similarity=0.353 Sum_probs=42.8
Q ss_pred HHHHHHHHHhCCCCEEEEEeC-CceEEc---cCccC----CCCccEEEEecCCChhHHHHHHHHHcCC
Q 010408 250 QELVSRVAKASRGPVVLVLMC-GGPVDV---SFAKN----DPRIGAILWVGYPGQAGGAAIADVLFGR 309 (511)
Q Consensus 250 ~~Li~~va~~~~kpvVvVl~~-g~P~~l---~~~~~----~~~v~Ail~a~~pG~e~g~AiAdVL~G~ 309 (511)
.++|+++.+.+++||++|-+| |+++.. .+... ...|+++|..--|=.-+.+|+..+++|+
T Consensus 107 k~~ie~~~~~~~~kv~li~HSmGgl~~~~fl~~~~~~~W~~~~i~~~i~i~~p~~Gs~~a~~~~~sG~ 174 (389)
T PF02450_consen 107 KQLIEEAYKKNGKKVVLIAHSMGGLVARYFLQWMPQEEWKDKYIKRFISIGTPFGGSPKALRALLSGD 174 (389)
T ss_pred HHHHHHHHHhcCCcEEEEEeCCCchHHHHHHHhccchhhHHhhhhEEEEeCCCCCCChHHHHHHhhhh
Confidence 356666666668899988886 666543 22211 2468999988877777788999999999
No 83
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=29.50 E-value=9.9 Score=34.17 Aligned_cols=54 Identities=24% Similarity=0.439 Sum_probs=29.5
Q ss_pred HHhhCCEEEEEeccCCCCccccCCCCCCCCChhHHH----HHHHHHHhCCCCEEEEEeCCceEEc
Q 010408 216 AARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQE----LVSRVAKASRGPVVLVLMCGGPVDV 276 (511)
Q Consensus 216 ~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~----Li~~va~~~~kpvVvVl~~g~P~~l 276 (511)
..+++|++|++.|... .++.+|.++ -....+ +.+++.+.+.+. ++++. .+|+++
T Consensus 66 ~~~~aDivvitag~~~---~~g~sR~~l--l~~N~~i~~~~~~~i~~~~p~~-~vivv-tNPvd~ 123 (141)
T PF00056_consen 66 ALKDADIVVITAGVPR---KPGMSRLDL--LEANAKIVKEIAKKIAKYAPDA-IVIVV-TNPVDV 123 (141)
T ss_dssp GGTTESEEEETTSTSS---STTSSHHHH--HHHHHHHHHHHHHHHHHHSTTS-EEEE--SSSHHH
T ss_pred ccccccEEEEeccccc---cccccHHHH--HHHhHhHHHHHHHHHHHhCCcc-EEEEe-CCcHHH
Confidence 4678999999988643 344444322 223333 344555545433 43433 589875
No 84
>TIGR00608 radc DNA repair protein radc. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=29.00 E-value=2e+02 Score=27.96 Aligned_cols=90 Identities=12% Similarity=0.239 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHHHHhcCC------CCCCcEEEeecccccCCccCCCCCCccccccccCHhHHHhhcCHHHHHHHHhCC
Q 010408 34 DPVLTGKYAASYVRGLQGNT------GSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGK 107 (511)
Q Consensus 34 DP~l~~~~a~a~v~G~Q~~~------~~~~~V~a~~KHF~g~g~~~~~~~~r~~~~~~~s~~~L~e~~L~PF~~ai~~g~ 107 (511)
+|.-+..+-.....+...+. ...+.++++-.=|-|- .+ .+.+++|++ |+.|++.+
T Consensus 99 s~~~v~~~l~~~l~~~~~E~f~vl~Ld~~n~li~~~~i~~Gt-------~~----~~~v~pReI-------~~~Al~~~- 159 (218)
T TIGR00608 99 SPEAAAEFLHTDLAHETREHFMVLFLDRKNRLIAKEVVFIGT-------VN----HVPVHPREI-------FKEALKLS- 159 (218)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEEEECCCCcEEEEEEeecCC-------CC----eEEEcHHHH-------HHHHHHhh-
Confidence 45556565555555554432 1333455544433321 11 245666655 88999988
Q ss_pred cceeEeeccCCCCccC-ccChHHHHHhhhhhcCCCc
Q 010408 108 VASVMCSYNQVNGKPT-CADPDILKNTIHGQWRLDG 142 (511)
Q Consensus 108 ~~sVM~syn~vng~pa-~~s~~ll~~lLR~e~gF~G 142 (511)
+.+|+.+||--.|.|. +.....+|.-|++-...=|
T Consensus 160 A~~vIlaHNHPSG~~~PS~~Di~~T~~l~~a~~~lg 195 (218)
T TIGR00608 160 ASALILAHNHPSGEPSPSQEDILITERLRKAAELLG 195 (218)
T ss_pred CCeEEEEeecCCCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 7899999999999665 3344456777776544433
No 85
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=28.92 E-value=82 Score=23.62 Aligned_cols=12 Identities=25% Similarity=0.592 Sum_probs=8.5
Q ss_pred ecCeEEEEEEeC
Q 010408 484 IPMGEHSLHIGD 495 (511)
Q Consensus 484 ~~~G~y~i~vG~ 495 (511)
++||+|+|.|=.
T Consensus 36 L~~G~Y~l~V~a 47 (66)
T PF07495_consen 36 LPPGKYTLEVRA 47 (66)
T ss_dssp --SEEEEEEEEE
T ss_pred CCCEEEEEEEEE
Confidence 589999998863
No 86
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=28.69 E-value=44 Score=34.41 Aligned_cols=57 Identities=21% Similarity=0.340 Sum_probs=32.9
Q ss_pred HHHhhCCEEEEEeccCCCCccccCCCCCCCC-C-hhHHHHHHHHHHhCCCCEEEEEeCCceEEc
Q 010408 215 VAARQADATVLVMGLDQSIEAEFIDRAGLLL-P-GRQQELVSRVAKASRGPVVLVLMCGGPVDV 276 (511)
Q Consensus 215 ~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~L-p-~~q~~Li~~va~~~~kpvVvVl~~g~P~~l 276 (511)
+..++||+||++.|... ..|-+|.+|-- . .-..++.+++.+.+. ..++++ ..+|+++
T Consensus 65 ~~~~~aDiVvitAG~pr---KpGmtR~DLl~~Na~I~~~i~~~i~~~~~-d~ivlV-vtNPvD~ 123 (313)
T COG0039 65 EDLKGADIVVITAGVPR---KPGMTRLDLLEKNAKIVKDIAKAIAKYAP-DAIVLV-VTNPVDI 123 (313)
T ss_pred hhhcCCCEEEEeCCCCC---CCCCCHHHHHHhhHHHHHHHHHHHHhhCC-CeEEEE-ecCcHHH
Confidence 45689999999998654 44445543310 0 112345566665444 344444 3689986
No 87
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=28.50 E-value=2.2e+02 Score=25.39 Aligned_cols=59 Identities=19% Similarity=0.217 Sum_probs=38.1
Q ss_pred eEEEEEEEEeCCCCCcc-eEEEEEeeCCCCC------CCcccccccc--cccccCCCCeEEEEEEecC
Q 010408 411 SLGLHVDIKNTGDMAGT-HTLLVFAKPPAGN------WSPNKQLIGF--KKVHVTAGALQSVRLDIHV 469 (511)
Q Consensus 411 ~~~v~v~V~NtG~~~G~-evvQlY~~~~~~~------~~P~k~L~gF--~kv~L~pGe~~~v~~~l~~ 469 (511)
.+.|+.+++|+++++=. =.++|-+.+..+. -.|..-|..- .+..|+||++.++++.+..
T Consensus 69 ~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~pg~~~~~~~~~~~ 136 (149)
T PF11906_consen 69 VLVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPPGESVPFRLRLED 136 (149)
T ss_pred EEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEEChHHhcccccccccccCCCCeEEEEEEeeC
Confidence 68999999999987422 2344555554432 2343333332 1445999999999999874
No 88
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=28.44 E-value=2.4e+02 Score=28.16 Aligned_cols=101 Identities=17% Similarity=0.142 Sum_probs=52.3
Q ss_pred cchHHHHHHHHhhCCEEEEEeccCCCCccccCCCCCCCC--ChhHHHHHH---HHHHhCCCCEEEEEeCCceEE--ccCc
Q 010408 207 NQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLL--PGRQQELVS---RVAKASRGPVVLVLMCGGPVD--VSFA 279 (511)
Q Consensus 207 ~~~~~~a~~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~L--p~~q~~Li~---~va~~~~kpvVvVl~~g~P~~--l~~~ 279 (511)
...++...+.+.. +-=|+++||. |-|.....- ...|.+..+ ++|+..++|+| +.+....+ +.-+
T Consensus 73 ~~~~~~l~~~~~~-~~~vvaIGEi------GLDy~~~~~~~~~~Q~~~F~~ql~lA~~~~lPvi--IH~R~A~~d~~~iL 143 (256)
T COG0084 73 EEDLEELEQLAEH-HPKVVAIGEI------GLDYYWDKEPDKERQEEVFEAQLELAKELNLPVI--IHTRDAHEDTLEIL 143 (256)
T ss_pred HHHHHHHHHHHhc-CCCeEEEEec------ccCccccccccHHHHHHHHHHHHHHHHHcCCCEE--EEccccHHHHHHHH
Confidence 3444555555544 4456777754 334322111 234666554 35566778754 44444432 1222
Q ss_pred cCCC-CccEEEEecCCChhHHHHHHHHHcCCCCCCeecC
Q 010408 280 KNDP-RIGAILWVGYPGQAGGAAIADVLFGRANPGGKLP 317 (511)
Q Consensus 280 ~~~~-~v~Ail~a~~pG~e~g~AiAdVL~G~~nPsGkLP 317 (511)
.+.. ...+|+.+|...-+..+.+.|.- --++-||-+.
T Consensus 144 ~~~~~~~~gi~HcFsGs~e~a~~~~d~G-~yisisG~it 181 (256)
T COG0084 144 KEEGAPVGGVLHCFSGSAEEARKLLDLG-FYISISGIVT 181 (256)
T ss_pred HhcCCCCCEEEEccCCCHHHHHHHHHcC-eEEEECceee
Confidence 2222 37889999887777666666652 2344555443
No 89
>cd03707 EFTU_III Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts). EF-Ts is the guanine-nucleotide-exchange factor for EF-Tu. EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Crystallographic studies revealed structural similarities ("molecular mimicry") between tertiary structures of EF-G and the EF-Tu-aminoacyl-tRNA ternary complex. Domains III, IV, and V of EF-G mimic the tRNA structure in the EF-Tu ternary complex; domains III, IV and V can be related to the acceptor stem, anticodon helix
Probab=28.30 E-value=3.1e+02 Score=21.98 Aligned_cols=67 Identities=7% Similarity=-0.004 Sum_probs=37.1
Q ss_pred eEEEEEEEEeC------CCCCcceEEEEEeeCCCCCCCccccccccccc-ccCCCCeEEEEEEecCCCCeeEEeCCCCEE
Q 010408 411 SLGLHVDIKNT------GDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKV-HVTAGALQSVRLDIHVCKHLSVVDKFGIRR 483 (511)
Q Consensus 411 ~~~v~v~V~Nt------G~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv-~L~pGe~~~v~~~l~~~~~ls~~d~~~~~~ 483 (511)
.+++++.+-+. ....-...+++++..... +- ++.-+.+- .|+|||+..|.|.+.. .+.. +..+.++
T Consensus 5 ~~~a~i~~l~~~~~g~~~~i~~g~~~~l~~gt~~~---~~-~i~~l~~~~~i~~g~~~~v~l~l~~--pv~~-~~~~rf~ 77 (90)
T cd03707 5 KFEAEVYVLTKEEGGRHTPFFSGYRPQFYIRTTDV---TG-SITLPEGTEMVMPGDNVKMTVELIH--PIAL-EKGLRFA 77 (90)
T ss_pred EEEEEEEEEcccccCCCCcccCCceeEEEeccCeE---EE-EEEccCcccccCCCCEEEEEEEECC--cEEE-ecCCEEE
Confidence 35566666553 334445556666654421 11 22222233 3999999999999985 4533 3344555
Q ss_pred e
Q 010408 484 I 484 (511)
Q Consensus 484 ~ 484 (511)
+
T Consensus 78 l 78 (90)
T cd03707 78 I 78 (90)
T ss_pred E
Confidence 5
No 90
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=28.01 E-value=1.2e+02 Score=27.19 Aligned_cols=17 Identities=24% Similarity=0.327 Sum_probs=13.9
Q ss_pred HHHHhhCCEEEEEeccC
Q 010408 214 EVAARQADATVLVMGLD 230 (511)
Q Consensus 214 ~~~a~~aD~vVv~vG~~ 230 (511)
..++++||+||+-+|+.
T Consensus 67 ~~li~~aDvVVvrFGek 83 (141)
T PF11071_consen 67 RTLIEKADVVVVRFGEK 83 (141)
T ss_pred HHHHhhCCEEEEEechH
Confidence 35678999999999853
No 91
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=27.58 E-value=1.7e+02 Score=24.98 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=29.1
Q ss_pred EEEEEEeCCCCCcceEEEEEeeCCCCCCCccccc-ccccccccCCCCeEEEEEEecC
Q 010408 414 LHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQL-IGFKKVHVTAGALQSVRLDIHV 469 (511)
Q Consensus 414 v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~k~L-~gF~kv~L~pGe~~~v~~~l~~ 469 (511)
-+++|.|...-+- .++|=+..+ |--+| .+...+.|+|||++++.|.|..
T Consensus 35 Y~lkl~Nkt~~~~--~~~i~~~g~-----~~~~l~~~~~~i~v~~g~~~~~~v~v~~ 84 (118)
T PF11614_consen 35 YTLKLTNKTNQPR--TYTISVEGL-----PGAELQGPENTITVPPGETREVPVFVTA 84 (118)
T ss_dssp EEEEEEE-SSS-E--EEEEEEES------SS-EE-ES--EEEE-TT-EEEEEEEEEE
T ss_pred EEEEEEECCCCCE--EEEEEEecC-----CCeEEECCCcceEECCCCEEEEEEEEEE
Confidence 5678899776553 355555543 23355 5778889999999999998875
No 92
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=27.04 E-value=98 Score=25.95 Aligned_cols=46 Identities=15% Similarity=0.310 Sum_probs=30.4
Q ss_pred HHHHHHHHhhCCEEEEEeccCCCCccccCCCCCCCCChhHHHHHHHHHHhCCCCEEEEEe
Q 010408 210 IGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLM 269 (511)
Q Consensus 210 ~~~a~~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~va~~~~kpvVvVl~ 269 (511)
+....+.+..+|++|+++-.+. .+.....++++.+. .++|+++|++
T Consensus 70 ~~~~~~~~~~~d~ii~vv~~~~------------~~~~~~~~~~~~l~--~~~~~i~v~N 115 (116)
T PF01926_consen 70 IRKFLEQISKSDLIIYVVDASN------------PITEDDKNILRELK--NKKPIILVLN 115 (116)
T ss_dssp HHHHHHHHCTESEEEEEEETTS------------HSHHHHHHHHHHHH--TTSEEEEEEE
T ss_pred HHHHHHHHHHCCEEEEEEECCC------------CCCHHHHHHHHHHh--cCCCEEEEEc
Confidence 3456666789999999984211 12244567788884 5678888874
No 93
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=26.86 E-value=1.6e+02 Score=27.01 Aligned_cols=54 Identities=20% Similarity=0.064 Sum_probs=33.2
Q ss_pred chHHHHHHHHhhCCEEEEEeccCCCCccccCCCCCCCCChhHHHHHHHHHH--hCCCCEEEEEeCCc
Q 010408 208 QLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAK--ASRGPVVLVLMCGG 272 (511)
Q Consensus 208 ~~~~~a~~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~va~--~~~kpvVvVl~~g~ 272 (511)
....+..+...+||.+|++.=+ .+...|+.-..+|+.+.. -.+||++++..+|+
T Consensus 57 ~~~~~~~~~i~~AD~iIi~tP~-----------Y~~s~~~~LKn~lD~~~~~~l~~K~~~~v~~~g~ 112 (174)
T TIGR03566 57 PDAERILQAIESADLLVVGSPV-----------YRGSYTGLFKHLFDLVDPNALIGKPVLLAATGGS 112 (174)
T ss_pred HHHHHHHHHHHHCCEEEEECCc-----------CcCcCcHHHHHHHHhcCHhHhCCCEEEEEEecCC
Confidence 4466777888999999997621 234456666666665431 23677666555443
No 94
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=26.56 E-value=1e+02 Score=22.74 Aligned_cols=22 Identities=18% Similarity=0.504 Sum_probs=16.9
Q ss_pred eEEEEEEEEeCCCCCcceEEEEE
Q 010408 411 SLGLHVDIKNTGDMAGTHTLLVF 433 (511)
Q Consensus 411 ~~~v~v~V~NtG~~~G~evvQlY 433 (511)
.++.+++|+|+|...... |+|-
T Consensus 13 ~v~Yti~v~N~g~~~a~~-v~v~ 34 (53)
T TIGR01451 13 TITYTITVTNNGNVPATN-VVVT 34 (53)
T ss_pred EEEEEEEEEECCCCceEe-EEEE
Confidence 799999999999977543 4443
No 95
>PRK15246 fimbrial assembly chaperone StbE; Provisional
Probab=26.50 E-value=1.9e+02 Score=28.47 Aligned_cols=54 Identities=19% Similarity=0.278 Sum_probs=35.7
Q ss_pred EEEEEEEeCCCCCcceEEEEEeeCCCCCCCcccccccccc---c-ccCCCCeEEEEEEec
Q 010408 413 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKK---V-HVTAGALQSVRLDIH 468 (511)
Q Consensus 413 ~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~k---v-~L~pGe~~~v~~~l~ 468 (511)
.++++|+|+++. --.||..+.+......|.+.=.-|-= + +|+||+.++|+|...
T Consensus 27 ~~sv~l~N~~~~--p~LvQsWvd~~~~~~~p~~~~~pFivtPPlfrl~~~~~~~lRI~~~ 84 (233)
T PRK15246 27 AQSLTLSNDNTT--PMLLQVWTDAGNIDASPDNSKTPLVALPPVFKMQPGELRTLRLLLS 84 (233)
T ss_pred eEEEEEEeCCCC--cEEEEEEEeCCCCccCcccccCcEEECCcceEECCCCceEEEEEEC
Confidence 578899999976 58999999654322223221012322 2 489999999998765
No 96
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=25.89 E-value=91 Score=24.39 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=15.7
Q ss_pred eEEEEEEEEeCCCCCcce
Q 010408 411 SLGLHVDIKNTGDMAGTH 428 (511)
Q Consensus 411 ~~~v~v~V~NtG~~~G~e 428 (511)
.++.+++|+|+|......
T Consensus 42 ~v~ytitvtN~G~~~a~n 59 (76)
T PF01345_consen 42 TVTYTITVTNTGPAPATN 59 (76)
T ss_pred EEEEEEEEEECCCCeeEe
Confidence 799999999999988554
No 97
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=25.06 E-value=1.9e+02 Score=29.37 Aligned_cols=57 Identities=19% Similarity=0.292 Sum_probs=33.9
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEeeCCCCCC--------Ccc----ccccccc--ccccCCCCeEEEEEEecC
Q 010408 411 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNW--------SPN----KQLIGFK--KVHVTAGALQSVRLDIHV 469 (511)
Q Consensus 411 ~~~v~v~V~NtG~~~G~evvQlY~~~~~~~~--------~P~----k~L~gF~--kv~L~pGe~~~v~~~l~~ 469 (511)
....+++|+|..+.+-+ |+|.=+-|.+.. .|. .+-.|.- ++.|+|||+++++|....
T Consensus 243 ~~~~~itv~N~~~~~v~--v~v~d~iPvs~~~~I~V~~~~~~~~~~~~~~g~~~W~~~l~~g~~~~l~~~y~v 313 (317)
T PF13598_consen 243 TYEYTITVRNNKDEPVT--VTVEDQIPVSEDEDIKVELLEPPEPNEDEKDGILEWKVTLPPGESRTLEFSYEV 313 (317)
T ss_pred EEEEEEEEECCCCCCEE--EEEEeCCCCCCCceEEEEEcCCCCCcccCCCCEEEEEEEECCCCEEEEEEEEEE
Confidence 46788999999866644 555555554431 111 1222222 345788888888877653
No 98
>cd09030 DUF1425 Putative periplasmic lipoprotein. This bacterial family of proteins contains members described as putative lipoproteins, some are also known as YcfL. The function of this family is unknown. Family members have also been annotated as predicted periplasmic lipoproteins (COG5633), and appear to contain an N-terminal membrane lipoprotein lipid attachment side (pfam08139), which is not included in this alignment model.
Probab=24.94 E-value=3.2e+02 Score=22.75 Aligned_cols=57 Identities=12% Similarity=0.097 Sum_probs=39.8
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEeeCCCCC-CCcccccccccccccCCCCeEEEEEEecC
Q 010408 411 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLDIHV 469 (511)
Q Consensus 411 ~~~v~v~V~NtG~~~G~evvQlY~~~~~~~-~~P~k~L~gF~kv~L~pGe~~~v~~~l~~ 469 (511)
.+++++.|+|+.+.+-.=-=.+|==+..+- ..|. ...++++.|.++|+.+|+..-+-
T Consensus 33 ~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~--~~~w~~l~l~~~~~~~l~~~ap~ 90 (101)
T cd09030 33 LLEAQATLSNTSSKPLTLQYRFYWYDAQGLEVEPE--QEPWQSLTLPGGQTVTLQAVAPN 90 (101)
T ss_pred eEEEEEEEEeCCCCCEEEEEEEEEECCCCCCcCCC--CCCCEEEEECCCCeEEEEEEcCC
Confidence 588999999999877444444444444443 2333 57899999999999998876553
No 99
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=24.94 E-value=1.4e+02 Score=26.69 Aligned_cols=17 Identities=18% Similarity=0.304 Sum_probs=14.0
Q ss_pred HHHHhhCCEEEEEeccC
Q 010408 214 EVAARQADATVLVMGLD 230 (511)
Q Consensus 214 ~~~a~~aD~vVv~vG~~ 230 (511)
..++++||+||+-.|+.
T Consensus 70 ~~li~~aDvvVvrFGek 86 (144)
T TIGR03646 70 RKLIEKADVVIALFGEK 86 (144)
T ss_pred HHHHhhCCEEEEEechH
Confidence 45688999999999854
No 100
>PF07233 DUF1425: Protein of unknown function (DUF1425); InterPro: IPR010824 This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.; PDB: 3O0L_A.
Probab=24.75 E-value=4e+02 Score=22.00 Aligned_cols=57 Identities=11% Similarity=0.074 Sum_probs=33.0
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEeeCCCCC-CCcccccccccccccCCCCeEEEEEEecC
Q 010408 411 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLDIHV 469 (511)
Q Consensus 411 ~~~v~v~V~NtG~~~G~evvQlY~~~~~~~-~~P~k~L~gF~kv~L~pGe~~~v~~~l~~ 469 (511)
..++++.++|+.+.+-.=--.+|==+..+- ..|. .-.++++.|.++|+.+|+..=+.
T Consensus 25 ~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~--~~~w~~~~l~~~~~~~l~~~ap~ 82 (94)
T PF07233_consen 25 LLRAQATLSNKSSKPLTLQYRFYWYDKQGLEVDPE--QSPWQSLTLPGGQTVTLSAVAPN 82 (94)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEEEE-TTS-EE--T--T---EEEEE-TT-EEEEEEE-SS
T ss_pred eEEEEEEEEECCCCcEEEEEEEEEECCCCCCcCCC--CCCCEEEEEcCCCEEEEEEECCC
Confidence 689999999999888554445554455543 2222 25688999999999999877654
No 101
>PRK15253 putative fimbrial assembly chaperone protein StcB; Provisional
Probab=24.75 E-value=2.6e+02 Score=27.69 Aligned_cols=54 Identities=17% Similarity=0.247 Sum_probs=36.5
Q ss_pred EEEEEEEeCCCCCcceEEEEEeeCCCCCCCccccccccccc----ccCCCCeEEEEEEec
Q 010408 413 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKV----HVTAGALQSVRLDIH 468 (511)
Q Consensus 413 ~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv----~L~pGe~~~v~~~l~ 468 (511)
.++++|+|+++. .-.+|..+.+......|.+.-.-|-=+ .|+||+.++++|...
T Consensus 50 ~~sv~i~N~~~~--pyLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~ 107 (242)
T PRK15253 50 EVVVQLVNQGEQ--ASLVQSWIDDGNTSLPPEKIQVPFMLTPPVARVAAESGQQIKIKKM 107 (242)
T ss_pred eEEEEEEcCCCC--cEEEEEEEECCCCCCCcccccCCEEECCCeEEECCCCceEEEEEEC
Confidence 578888999986 599999998754322222211124332 479999999999744
No 102
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=24.67 E-value=52 Score=33.81 Aligned_cols=55 Identities=27% Similarity=0.387 Sum_probs=31.6
Q ss_pred HHHhhCCEEEEEeccCCCCccccCCCCCCCCChhH----HHHHHHHHHhCCCCEEEEEeCCceEEc
Q 010408 215 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDV 276 (511)
Q Consensus 215 ~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q----~~Li~~va~~~~kpvVvVl~~g~P~~l 276 (511)
+..+++|+||++.|... .+|.+|.++ -... .+.++++.+.++ ..+ +++..+|+|+
T Consensus 64 ~~~~daDivvitaG~~~---k~g~tR~dl--l~~N~~i~~~i~~~i~~~~p-~a~-vivvtNPvDv 122 (310)
T cd01337 64 KALKGADVVVIPAGVPR---KPGMTRDDL--FNINAGIVRDLATAVAKACP-KAL-ILIISNPVNS 122 (310)
T ss_pred HhcCCCCEEEEeCCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhCC-CeE-EEEccCchhh
Confidence 55789999999999643 234455322 2222 234455555443 334 4444689976
No 103
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=24.60 E-value=2.4e+02 Score=27.20 Aligned_cols=37 Identities=16% Similarity=0.163 Sum_probs=28.5
Q ss_pred HHHHHHhhCCEEEEEeccCCCCccccCCCCCCCCChhHHHHHHHHHHh
Q 010408 212 AAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKA 259 (511)
Q Consensus 212 ~a~~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~va~~ 259 (511)
+-++....||.+|++.. --|+..|..-...|+.|+.+
T Consensus 80 ~l~~ef~aAD~vVi~~P-----------M~Nf~iPa~LK~yiD~i~~a 116 (202)
T COG1182 80 KLLEEFLAADKVVIAAP-----------MYNFNIPAQLKAYIDHIAVA 116 (202)
T ss_pred HHHHHHHhcCeEEEEec-----------ccccCCCHHHHHHHHHHhcC
Confidence 33455678999999873 34688999999999999853
No 104
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=24.58 E-value=47 Score=33.90 Aligned_cols=53 Identities=21% Similarity=0.381 Sum_probs=29.4
Q ss_pred HhhCCEEEEEeccCCCCccccCCCCCCCCChhHHHH----HHHHHHhCCCCEEEEEeCCceEEc
Q 010408 217 ARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQEL----VSRVAKASRGPVVLVLMCGGPVDV 276 (511)
Q Consensus 217 a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~L----i~~va~~~~kpvVvVl~~g~P~~l 276 (511)
++++|++|+++|.... ++.+|.+ |-....++ ++++.+.++ ..++++ ..+|+++
T Consensus 67 ~~~aDiVIitag~p~~---~~~sR~~--l~~~N~~iv~~i~~~I~~~~p-~~~iIv-~tNP~di 123 (305)
T TIGR01763 67 TANSDIVVITAGLPRK---PGMSRED--LLSMNAGIVREVTGRIMEHSP-NPIIVV-VSNPLDA 123 (305)
T ss_pred hCCCCEEEEcCCCCCC---cCCCHHH--HHHHHHHHHHHHHHHHHHHCC-CeEEEE-ecCcHHH
Confidence 5799999999996542 2334422 22233334 444554433 334333 4589886
No 105
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=24.44 E-value=2e+02 Score=31.63 Aligned_cols=57 Identities=16% Similarity=0.278 Sum_probs=34.0
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEeeCCCCC-C-------Ccc-cc---cc---ccc--ccccCCCCeEEEEEEecC
Q 010408 411 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGN-W-------SPN-KQ---LI---GFK--KVHVTAGALQSVRLDIHV 469 (511)
Q Consensus 411 ~~~v~v~V~NtG~~~G~evvQlY~~~~~~~-~-------~P~-k~---L~---gF~--kv~L~pGe~~~v~~~l~~ 469 (511)
....+++|+|+++.+ -.|.|+=+-|.+. . .|. .. .+ |-- ++.|+||++++++|....
T Consensus 443 ~~~~~i~v~N~~~~~--v~v~v~d~~PvS~d~~i~V~~~~~~~~~~~~~~~~~G~~~W~l~L~pg~~~~l~~~y~v 516 (525)
T TIGR02231 443 EYAYRITLKNLRKEP--ERVQIEEQLPVSENEDIKVKLLSPTTPGYDEEDKKDGILEWKLTLKPGEKRDLKFKFKV 516 (525)
T ss_pred EEEEEEEEEcCCCCc--eEEEEEeeccCCCCCeeEEEEecCCCccccccccCCCeEEEEEEECCCCeEEEEEEEEE
Confidence 467889999998875 3445554556443 1 111 11 11 211 356899999988887764
No 106
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=24.17 E-value=66 Score=33.05 Aligned_cols=56 Identities=25% Similarity=0.377 Sum_probs=31.9
Q ss_pred HHHhhCCEEEEEeccCCCCccccCCCCCCCCChhH---HHHHHHHHHhCCCCEEEEEeCCceEEc
Q 010408 215 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ---QELVSRVAKASRGPVVLVLMCGGPVDV 276 (511)
Q Consensus 215 ~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q---~~Li~~va~~~~kpvVvVl~~g~P~~l 276 (511)
+..++||+||++.|... .++.+|.++ |+.+- .+.++++.+.++ ..+ +++..+|+|+
T Consensus 63 ~~~~daDivvitaG~~~---~~g~~R~dl-l~~N~~I~~~i~~~i~~~~p-~~i-iivvsNPvDv 121 (312)
T TIGR01772 63 NALKGADVVVIPAGVPR---KPGMTRDDL-FNVNAGIVKDLVAAVAESCP-KAM-ILVITNPVNS 121 (312)
T ss_pred HHcCCCCEEEEeCCCCC---CCCccHHHH-HHHhHHHHHHHHHHHHHhCC-CeE-EEEecCchhh
Confidence 45789999999999643 345556433 22211 234445554433 344 4444689984
No 107
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=24.04 E-value=75 Score=34.05 Aligned_cols=69 Identities=19% Similarity=0.302 Sum_probs=54.2
Q ss_pred CCCCCCChhHHHHHHHHHHhC---CCCEEEEEeCCceEEccCccCCCCccEEEEecCCChhHHHHHHHHHcCC
Q 010408 240 RAGLLLPGRQQELVSRVAKAS---RGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGR 309 (511)
Q Consensus 240 r~~l~Lp~~q~~Li~~va~~~---~kpvVvVl~~g~P~~l~~~~~~~~v~Ail~a~~pG~e~g~AiAdVL~G~ 309 (511)
|..-.+...|..-+.++.-.+ .+.+|+|+.+.+|=++.|.. .++++-+|.--+||+|--.-|...-|-+
T Consensus 459 RnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgdlDsAV-~DRide~veFpLPGeEERfkll~lYlnk 530 (630)
T KOG0742|consen 459 RNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAV-NDRIDEVVEFPLPGEEERFKLLNLYLNK 530 (630)
T ss_pred hchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCccchhHHH-HhhhhheeecCCCChHHHHHHHHHHHHH
Confidence 555677888988888876433 35689999999999998865 4789999999999999777777665544
No 108
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=23.98 E-value=2.7e+02 Score=25.65 Aligned_cols=47 Identities=23% Similarity=0.284 Sum_probs=29.7
Q ss_pred HHHHHHHHhhCCEEEEEeccCCCCccccCCCCCCCCChhHHHHHHHHHHhCCCCEEEEEe
Q 010408 210 IGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLM 269 (511)
Q Consensus 210 ~~~a~~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~va~~~~kpvVvVl~ 269 (511)
..+....++.+|.+|+++-... | +.....++++.+. ..+.|+|+|++
T Consensus 84 ~~~~~~~~~~~D~ailvVda~~-----g-------~~~~~~~~l~~~~-~~~~p~ivvlN 130 (188)
T PF00009_consen 84 IKEMIRGLRQADIAILVVDAND-----G-------IQPQTEEHLKILR-ELGIPIIVVLN 130 (188)
T ss_dssp HHHHHHHHTTSSEEEEEEETTT-----B-------STHHHHHHHHHHH-HTT-SEEEEEE
T ss_pred eecccceecccccceeeeeccc-----c-------ccccccccccccc-ccccceEEeee
Confidence 4556677889999999994321 1 2333445666665 45788777776
No 109
>PLN02602 lactate dehydrogenase
Probab=23.90 E-value=46 Score=34.78 Aligned_cols=54 Identities=26% Similarity=0.383 Sum_probs=31.2
Q ss_pred HHhhCCEEEEEeccCCCCccccCCCCCCCCChhHH----HHHHHHHHhCCCCEEEEEeCCceEEc
Q 010408 216 AARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQ----ELVSRVAKASRGPVVLVLMCGGPVDV 276 (511)
Q Consensus 216 ~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q~----~Li~~va~~~~kpvVvVl~~g~P~~l 276 (511)
..++||+||++.|... .+|.+|.++ -..-. ++++++.+.+. ..++++. .+|+++
T Consensus 102 ~~~daDiVVitAG~~~---k~g~tR~dl--l~~N~~I~~~i~~~I~~~~p-~~ivivv-tNPvdv 159 (350)
T PLN02602 102 VTAGSDLCIVTAGARQ---IPGESRLNL--LQRNVALFRKIIPELAKYSP-DTILLIV-SNPVDV 159 (350)
T ss_pred HhCCCCEEEECCCCCC---CcCCCHHHH--HHHHHHHHHHHHHHHHHHCC-CeEEEEe-cCchHH
Confidence 4789999999998653 234455432 22222 34455555443 3444444 589876
No 110
>PTZ00325 malate dehydrogenase; Provisional
Probab=23.76 E-value=51 Score=34.06 Aligned_cols=57 Identities=26% Similarity=0.366 Sum_probs=33.2
Q ss_pred HHHHhhCCEEEEEeccCCCCccccCCCCCCCCCh---hHHHHHHHHHHhCCCCEEEEEeCCceEEc
Q 010408 214 EVAARQADATVLVMGLDQSIEAEFIDRAGLLLPG---RQQELVSRVAKASRGPVVLVLMCGGPVDV 276 (511)
Q Consensus 214 ~~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~---~q~~Li~~va~~~~kpvVvVl~~g~P~~l 276 (511)
.+..+++|+||++.|... .++.+|.++ |.. .-.++++++.+...+ - +|+.+.+|+++
T Consensus 71 ~~~l~gaDvVVitaG~~~---~~~~tR~dl-l~~N~~i~~~i~~~i~~~~~~-~-iviv~SNPvdv 130 (321)
T PTZ00325 71 EKALRGADLVLICAGVPR---KPGMTRDDL-FNTNAPIVRDLVAAVASSAPK-A-IVGIVSNPVNS 130 (321)
T ss_pred HHHhCCCCEEEECCCCCC---CCCCCHHHH-HHHHHHHHHHHHHHHHHHCCC-e-EEEEecCcHHH
Confidence 456789999999999643 223344332 222 234566677655433 3 34444689876
No 111
>PF02102 Peptidase_M35: Deuterolysin metalloprotease (M35) family; InterPro: IPR001384 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M35 (deuterolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Deuterolysin is a microbial zinc-containing metalloprotease that shows some similarity to thermolysin []. The protein is expressed with a possible 19-residue signal sequence, a 155-residue propeptide, and an active peptide of 177 residues []. The latter contains an HEXXH motif towards the C terminus, but the other zinc ligands are as yet undetermined [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 1EB6_A.
Probab=23.69 E-value=26 Score=36.67 Aligned_cols=64 Identities=17% Similarity=0.206 Sum_probs=0.0
Q ss_pred eEEEEEEEEeCCCCCcc-------------eEEEEEeeCCCC---CCCcccccccccc---cccCCCCeEEEEEEecCCC
Q 010408 411 SLGLHVDIKNTGDMAGT-------------HTLLVFAKPPAG---NWSPNKQLIGFKK---VHVTAGALQSVRLDIHVCK 471 (511)
Q Consensus 411 ~~~v~v~V~NtG~~~G~-------------evvQlY~~~~~~---~~~P~k~L~gF~k---v~L~pGe~~~v~~~l~~~~ 471 (511)
...|+++|||||+.+=+ +=|++|-....- ..++.-.+-+... +.|+|||+.+++|.|-...
T Consensus 39 nt~VkA~VTNtG~e~l~llK~ntilD~~Pv~kv~V~~~g~~V~F~Gi~~~~~~~~L~~d~F~~L~pG~sve~~fDiA~~~ 118 (359)
T PF02102_consen 39 NTRVKATVTNTGSEDLKLLKYNTILDSAPVKKVSVYKDGKEVPFTGIRLRYDTSGLTEDAFQTLAPGESVEVEFDIAETH 118 (359)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcEEEEEEEeCCCcceEEEeeceecCCCceeEEEEEcCCcccccccEEEEEecCCCCHHHceecCCCCeEEEEEcchhee
Confidence 35799999999986522 234444221110 1233323223222 3489999999999997645
Q ss_pred Cee
Q 010408 472 HLS 474 (511)
Q Consensus 472 ~ls 474 (511)
||+
T Consensus 119 dLs 121 (359)
T PF02102_consen 119 DLS 121 (359)
T ss_dssp ---
T ss_pred ecC
Confidence 564
No 112
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=23.57 E-value=5.9e+02 Score=25.53 Aligned_cols=66 Identities=15% Similarity=0.139 Sum_probs=39.1
Q ss_pred HHHHHHHhCCcceeEeeccCCCCccCccChHHHHHhhhhhcCCCcEEECCCCcccccccCCCCCCCHHHH--HHHchhcc
Q 010408 98 PFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEA--AADAIKAG 175 (511)
Q Consensus 98 PF~~ai~~g~~~sVM~syn~vng~pa~~s~~ll~~lLR~e~gF~G~VvSD~~~~~~~~~~~~~~~~~~~a--~~~ai~AG 175 (511)
-|++.-++|..-.++++|... +..|=++.|||.+.++|+.+|..+-......-+.++. ..+++..|
T Consensus 6 ~~~~~~~~g~~i~m~tayD~~------------sA~i~~~aG~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg 73 (263)
T TIGR00222 6 SLLQKKKQEEKIVAITAYDYS------------FAKLFADAGVDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRG 73 (263)
T ss_pred HHHHHHhCCCcEEEEeccCHH------------HHHHHHHcCCCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhh
Confidence 455555666666666777543 3345568999999999998886542211112233332 34556666
No 113
>PRK01355 azoreductase; Reviewed
Probab=23.18 E-value=2.5e+02 Score=26.43 Aligned_cols=39 Identities=10% Similarity=0.174 Sum_probs=28.4
Q ss_pred chHHHHHHHHhhCCEEEEEeccCCCCccccCCCCCCCCChhHHHHHHHHH
Q 010408 208 QLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVA 257 (511)
Q Consensus 208 ~~~~~a~~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~va 257 (511)
.+..+..+...+||.+|++.= --++..|+.-..+|+.+.
T Consensus 66 ~~~~~~~~~l~~AD~iV~~sP-----------~y~~~ipa~LK~~iDrv~ 104 (199)
T PRK01355 66 EVSDKYINQLKSVDKVVISCP-----------MTNFNVPATLKNYLDHIA 104 (199)
T ss_pred hhHHHHHHHHHhCCEEEEEcC-----------ccccCChHHHHHHHHHHH
Confidence 345667778899999999862 234667887777888875
No 114
>COG1361 S-layer domain [Cell envelope biogenesis, outer membrane]
Probab=23.16 E-value=1.7e+02 Score=31.90 Aligned_cols=58 Identities=17% Similarity=0.169 Sum_probs=38.8
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEeeCCCCCCCcccccc-cccccccCCCCeEEEEEEecC
Q 010408 411 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLI-GFKKVHVTAGALQSVRLDIHV 469 (511)
Q Consensus 411 ~~~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~k~L~-gF~kv~L~pGe~~~v~~~l~~ 469 (511)
.-++++.|+|+|...-+-+.-.|.. |..-..|+.+.. -+..-.|.|||+..|+|.+..
T Consensus 168 ~~~l~~~I~N~G~~~~~~v~l~~~~-~~~~~~~i~~~~~~~~i~~l~p~es~~v~f~v~~ 226 (500)
T COG1361 168 TNTLTLTIKNPGEGPAKNVSLSLES-PTSYLGPIYSANDTPYIGALGPGESVNVTFSVYA 226 (500)
T ss_pred ccEEEEEEEeCCcccccceEEEEeC-CcceeccccccccceeeeeeCCCceEEEEEEEEe
Confidence 3479999999999987777776654 110012222222 133335899999999999987
No 115
>TIGR03396 PC_PLC phospholipase C, phosphocholine-specific, Pseudomonas-type. Members of this protein family are bacterial, phosphatidylcholine-hydrolyzing phospholipase C enzymes, with a characteristic domain architecture as found in hemolytyic (PlcH) and nonhemolytic (PlcN) secreted enzymes of Pseudomonas aeruginosa. PlcH hydrolyzes phosphatidylcholine to diacylglycerol and phosphocholine, but unlike PlcN can also hydrolyze sphingomyelin to ceramide ((N-acylsphingosine)) and phosphocholine. Members of this family share the twin-arginine signal sequence for Sec-independent transport across the plasma membrane. PlcH is secreted as a heterodimer with a small chaperone, PlcR, encoded immediately downstream.
Probab=23.16 E-value=3.6e+02 Score=31.00 Aligned_cols=47 Identities=23% Similarity=0.362 Sum_probs=30.2
Q ss_pred EEEEEEEeCCCCCcceEEEEEeeCCCCCCCcccccccccccccCCCCeEEEEEEecC
Q 010408 413 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHV 469 (511)
Q Consensus 413 ~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv~L~pGe~~~v~~~l~~ 469 (511)
.|.++++|+|+.+ -+++||-.. +....| .+..|+||.+.+.++.+..
T Consensus 606 ~L~L~L~N~G~~a--~~ftV~d~~-Y~~~~p-------r~ytV~aG~~~~~~w~l~~ 652 (690)
T TIGR03396 606 NLYLTLSNAGRSP--VTVTVTDNA-YGGAGP-------RTVTVAPGQRVELHWDLSA 652 (690)
T ss_pred EEEEEEEeCCCCc--EEEEEEeCC-CCCCCC-------EEEEECCCCEEEEEEeccC
Confidence 3778889999754 335555221 111122 2678999999998888764
No 116
>PRK00024 hypothetical protein; Reviewed
Probab=22.91 E-value=2.5e+02 Score=27.41 Aligned_cols=90 Identities=14% Similarity=0.234 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHHHHhcCC------CCCCcEEEeecccccCCccCCCCCCccccccccCHhHHHhhcCHHHHHHHHhCC
Q 010408 34 DPVLTGKYAASYVRGLQGNT------GSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGK 107 (511)
Q Consensus 34 DP~l~~~~a~a~v~G~Q~~~------~~~~~V~a~~KHF~g~g~~~~~~~~r~~~~~~~s~~~L~e~~L~PF~~ai~~g~ 107 (511)
+|.-+.++-.....+..... ...+.++++-.=|-|- .+ .+.+++|++ |+.|++.+
T Consensus 105 ~~~~~~~~l~~~l~~~~~E~f~vl~Ld~~~~li~~~~i~~Gt-------~~----~~~v~pRei-------~~~Al~~~- 165 (224)
T PRK00024 105 SPEDVADYLMAELRDEEQEHFVVLFLDTKNRVIADEELFIGT-------LN----SSIVHPREI-------VKRALKLN- 165 (224)
T ss_pred CHHHHHHHHHHHccCCCceEEEEEEECCCCCEeeEEEeeeec-------CC----eEEEcHHHH-------HHHHHHhh-
Confidence 45556665555555544332 1333455554444331 11 245666655 88999988
Q ss_pred cceeEeeccCCCCccC-ccChHHHHHhhhhhcCCCc
Q 010408 108 VASVMCSYNQVNGKPT-CADPDILKNTIHGQWRLDG 142 (511)
Q Consensus 108 ~~sVM~syn~vng~pa-~~s~~ll~~lLR~e~gF~G 142 (511)
+.+|..+||--.|.|. +.....+|.-|++-...=|
T Consensus 166 A~~iIl~HNHPSG~~~PS~~D~~~T~~l~~a~~~l~ 201 (224)
T PRK00024 166 AAALILAHNHPSGDPEPSQADILITKRLKEAGELLG 201 (224)
T ss_pred ccceEEEecCCCCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 7899999999998654 2334456777776544433
No 117
>PRK15224 pili assembly chaperone protein SafB; Provisional
Probab=22.86 E-value=2.8e+02 Score=27.30 Aligned_cols=50 Identities=12% Similarity=0.114 Sum_probs=35.3
Q ss_pred EEEEEEEeCCCCCcceEEEEEeeCCCCCCCccccccccccc----ccCCCCeEEEEEEecC
Q 010408 413 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKV----HVTAGALQSVRLDIHV 469 (511)
Q Consensus 413 ~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv----~L~pGe~~~v~~~l~~ 469 (511)
.++++|+|+++.+ ..+|..+.+......+ -|-=+ .|+||+.++++|-...
T Consensus 45 ~~sl~v~N~~~~p--yLvQsWvd~~~~~~~~-----pFivtPPlfRlep~~~~~lRI~~~~ 98 (237)
T PRK15224 45 GATLSVSNPQNYP--ILVQSSVKAADKSSPA-----PFLVMPPLFRLEANQQSQLRIVRTG 98 (237)
T ss_pred EEEEEEEcCCCCc--EEEEEEEeCCCCCccC-----CEEECCCeEEECCCCceEEEEEECC
Confidence 4788889999765 9999999875432111 13222 4789999999988753
No 118
>PF12790 T6SS-SciN: Type VI secretion lipoprotein; InterPro: IPR017734 This entry represents a family of lipoproteins associated with IAHP-related loci, thought to be type VI secretion system protein []. ; PDB: 3RX9_A.
Probab=22.30 E-value=94 Score=27.82 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=17.3
Q ss_pred ccccccccccCCCCeEEEEEEecC
Q 010408 446 QLIGFKKVHVTAGALQSVRLDIHV 469 (511)
Q Consensus 446 ~L~gF~kv~L~pGe~~~v~~~l~~ 469 (511)
.|..-+++.|.|||+++++++++.
T Consensus 76 ~ll~~~e~~l~Pg~~~~~~~~~~~ 99 (142)
T PF12790_consen 76 DLLSVDEFVLQPGESRTLTLDRDP 99 (142)
T ss_dssp HEEEEEEEEE-TT-EEEEEEE--T
T ss_pred hhhcceEEEECCCCcEeeeEccCC
Confidence 566788888999999999999986
No 119
>PF09544 DUF2381: Protein of unknown function (DUF2381); InterPro: IPR011754 This family consists of at least 8 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. The function is unknown.
Probab=22.22 E-value=4.7e+02 Score=26.55 Aligned_cols=57 Identities=12% Similarity=0.113 Sum_probs=41.4
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEeeCCCCCCCccccccc-ccccccCCCCeEEEEEEecC
Q 010408 411 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIG-FKKVHVTAGALQSVRLDIHV 469 (511)
Q Consensus 411 ~~~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~k~L~g-F~kv~L~pGe~~~v~~~l~~ 469 (511)
.+-|.|+|+|...-.-=..-+..+..+. ..+.|.+.= ++.=.|.||++..|-++.+.
T Consensus 203 ~vav~v~l~N~~g~~PW~~~~A~L~g~~--G~~lr~~~V~~~~~~i~PG~~grVvVe~e~ 260 (289)
T PF09544_consen 203 WVAVVVTLRNLSGQPPWTPGEARLTGPS--GEPLRALAVRWQEGPIAPGGSGRVVVEAEA 260 (289)
T ss_pred eEEEEEEEECCCCCCCceeeEEEEECCC--CCcceeeeeecccCccCCCCceeEEEEecC
Confidence 5789999999555444445567776554 444555444 77778999999999999986
No 120
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=22.07 E-value=75 Score=32.49 Aligned_cols=54 Identities=19% Similarity=0.359 Sum_probs=29.4
Q ss_pred HHhhCCEEEEEeccCCCCccccCCCCCCCCChh----HHHHHHHHHHhCCCCEEEEEeCCceEEc
Q 010408 216 AARQADATVLVMGLDQSIEAEFIDRAGLLLPGR----QQELVSRVAKASRGPVVLVLMCGGPVDV 276 (511)
Q Consensus 216 ~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~----q~~Li~~va~~~~kpvVvVl~~g~P~~l 276 (511)
..++||++|+++|... .++.+|.++ -.. -.+.++++.+.++ .-++++ .++|+++
T Consensus 69 ~l~~aDiViitag~p~---~~~~~r~dl--~~~n~~i~~~~~~~i~~~~~-~~~viv-~~npvd~ 126 (309)
T cd05294 69 DVAGSDIVIITAGVPR---KEGMSRLDL--AKKNAKIVKKYAKQIAEFAP-DTKILV-VTNPVDV 126 (309)
T ss_pred HhCCCCEEEEecCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHHCC-CeEEEE-eCCchHH
Confidence 4789999999998653 334344322 111 1233444554443 333333 3589875
No 121
>PF14079 DUF4260: Domain of unknown function (DUF4260)
Probab=21.67 E-value=45 Score=28.97 Aligned_cols=17 Identities=29% Similarity=0.536 Sum_probs=13.6
Q ss_pred ccCcCCCc-CCceecccc
Q 010408 357 PFGHGMSY-TTFAHTLSK 373 (511)
Q Consensus 357 pFG~GLSY-TtF~ys~~~ 373 (511)
-|||||-| +.|+++.+.
T Consensus 94 ~lGYGLKy~~gF~~THLg 111 (113)
T PF14079_consen 94 ALGYGLKYPDGFKDTHLG 111 (113)
T ss_pred HcCcCCCCCCCccccccc
Confidence 58999999 678877653
No 122
>PRK15452 putative protease; Provisional
Probab=21.54 E-value=76 Score=34.36 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=17.8
Q ss_pred HHHhhh--hhcCCCcEEECCCCcccc
Q 010408 130 LKNTIH--GQWRLDGYIVSDCDSVGV 153 (511)
Q Consensus 130 l~~lLR--~e~gF~G~VvSD~~~~~~ 153 (511)
+...|+ .++|.||++|+|++.+..
T Consensus 78 ~~~~l~~l~~~gvDgvIV~d~G~l~~ 103 (443)
T PRK15452 78 FIRDLEPVIAMKPDALIMSDPGLIMM 103 (443)
T ss_pred HHHHHHHHHhCCCCEEEEcCHHHHHH
Confidence 344455 379999999999987654
No 123
>PF08853 DUF1823: Domain of unknown function (DUF1823); InterPro: IPR014952 These proteins are functionally uncharacterised. ; PDB: 2L1N_A.
Probab=21.21 E-value=38 Score=29.32 Aligned_cols=15 Identities=20% Similarity=0.474 Sum_probs=6.9
Q ss_pred HhhhhhcCCCcEEEC
Q 010408 132 NTIHGQWRLDGYIVS 146 (511)
Q Consensus 132 ~lLR~e~gF~G~VvS 146 (511)
.+||++|||+|+=|.
T Consensus 79 QlLKe~LgFkGYki~ 93 (116)
T PF08853_consen 79 QLLKEQLGFKGYKIG 93 (116)
T ss_dssp THHHHTT------GG
T ss_pred HHHHHhcCCCceeec
Confidence 578899999998664
No 124
>PF06165 Glyco_transf_36: Glycosyltransferase family 36; InterPro: IPR010383 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyltransferase family 36 includes cellobiose phosphorylase (2.4.1.20 from EC), cellodextrin phosphorylase (2.4.1.49 from EC), and chitobiose phosphorylase. Many members of this family contain two copies of the domain represented in this entry.; PDB: 3QDE_A 3RRS_B 1V7V_A 1V7W_A 1V7X_A 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A ....
Probab=21.17 E-value=1.4e+02 Score=25.59 Aligned_cols=58 Identities=17% Similarity=0.326 Sum_probs=32.3
Q ss_pred ccccCcCCCcCCceecccccCCCccccccccccccccccccccceeeccccCCCceeEE-EEEEEEeCCCCCcceEEEEE
Q 010408 355 VFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLG-LHVDIKNTGDMAGTHTLLVF 433 (511)
Q Consensus 355 lypFG~GLSYTtF~ys~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~v~V~NtG~~~G~evvQlY 433 (511)
.|-.-||+.||+|....-.+..... +-+.. +. .++ ..++|+|+|++.=+=-+=-|
T Consensus 31 ~y~~~~g~g~~~f~~~~~gi~~~~~-------------------v~V~~---~~--~vEi~~l~l~N~~~~~r~L~vtsy 86 (110)
T PF06165_consen 31 EYEVRHGFGYTRFEREDGGIETELT-------------------VFVPP---DD--PVEIRRLRLTNTSNRPRRLSVTSY 86 (110)
T ss_dssp EEEEEEESSEEEEEEEETTEEEEEE-------------------EE--T---TS--SEEEEEEEEEE-SSS-EEEEEEEE
T ss_pred cEEEEECCCeEEEEEEeCCEEEEEE-------------------EEEcC---CC--CEEEEEEEEEECcCCcEEEEEEEE
Confidence 6889999999999976533321000 01111 11 233 46899999998766555555
Q ss_pred eeC
Q 010408 434 AKP 436 (511)
Q Consensus 434 ~~~ 436 (511)
+..
T Consensus 87 ~E~ 89 (110)
T PF06165_consen 87 AEW 89 (110)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 125
>PRK09739 hypothetical protein; Provisional
Probab=20.64 E-value=2.4e+02 Score=26.49 Aligned_cols=56 Identities=20% Similarity=0.148 Sum_probs=36.0
Q ss_pred chHHHHHHHHhhCCEEEEEeccCCCCccccCCCCCCCCChhHHHHHHHHHHh----------CCCCEEEEEeCCceE
Q 010408 208 QLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKA----------SRGPVVLVLMCGGPV 274 (511)
Q Consensus 208 ~~~~~a~~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~va~~----------~~kpvVvVl~~g~P~ 274 (511)
.+..+..+...+||.+|++.= --++.+|..-..+|+.+... .+|+++++..+|++.
T Consensus 68 ~~~~~~~~~l~~AD~iV~~~P-----------~y~~~~Pa~LK~~iD~v~~~g~~y~~~~~l~~k~~~~v~t~g~~~ 133 (199)
T PRK09739 68 PEVHQLYSELLEHDALVFVFP-----------LWWYSFPAMLKGYIDRVWNNGLAYGDGHKLPFNKVRWVALVGGSK 133 (199)
T ss_pred HHHHHHHHHHHhCCEEEEECc-----------hhhhcchHHHHHHHHHHccccccccCCccCCCCeEEEEEecCCCh
Confidence 446677788899999999862 23456777777788777421 235555555555543
No 126
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=20.56 E-value=3.1e+02 Score=26.78 Aligned_cols=72 Identities=15% Similarity=0.112 Sum_probs=42.6
Q ss_pred HHHHHHHH-hhCCEEEEEeccCCCCccccCCCCCCCCChhHHHHHHHHHHhCCCCEEEEEeCCceEEccCccCCCCccEE
Q 010408 210 IGAAEVAA-RQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAI 288 (511)
Q Consensus 210 ~~~a~~~a-~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~va~~~~kpvVvVl~~g~P~~l~~~~~~~~v~Ai 288 (511)
+.+.++.+ +.+|++||.+. |..|.. ..-...|+++.+++.++ +.-+ | +...|-.+..++ ..+.-
T Consensus 173 i~~~i~~~r~~~D~vIv~~H----wG~e~~----~~p~~~q~~~a~~lida-GaDi--I-iG~HpHv~q~~E---~y~~~ 237 (250)
T PF09587_consen 173 IKEDIREARKKADVVIVSLH----WGIEYE----NYPTPEQRELARALIDA-GADI--I-IGHHPHVIQPVE---IYKGK 237 (250)
T ss_pred HHHHHHHHhcCCCEEEEEec----cCCCCC----CCCCHHHHHHHHHHHHc-CCCE--E-EeCCCCcccceE---EECCE
Confidence 33334444 46999999984 333321 22367899999999874 5432 2 345676665442 34555
Q ss_pred EEecCCCh
Q 010408 289 LWVGYPGQ 296 (511)
Q Consensus 289 l~a~~pG~ 296 (511)
+.+|.-|.
T Consensus 238 ~I~YSLGN 245 (250)
T PF09587_consen 238 PIFYSLGN 245 (250)
T ss_pred EEEEeCcc
Confidence 66776664
No 127
>PRK15233 putative fimbrial chaperone protein SefB; Provisional
Probab=20.18 E-value=3.4e+02 Score=26.93 Aligned_cols=49 Identities=12% Similarity=0.031 Sum_probs=35.0
Q ss_pred EEEEEEEeCCCCCcceEEEEEeeCCCCC-CCccccccccccc----ccCCCCeEEEEEEecC
Q 010408 413 GLHVDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFKKV----HVTAGALQSVRLDIHV 469 (511)
Q Consensus 413 ~v~v~V~NtG~~~G~evvQlY~~~~~~~-~~P~k~L~gF~kv----~L~pGe~~~v~~~l~~ 469 (511)
.++++|+|+++.. -.+|..+.+.... ..| |-=+ .|+||+.++|++....
T Consensus 57 ~~sl~i~N~~~~p--~LvQsWvd~~~~~~~~p------FiVtPPLfRLep~~~~~lRIi~~~ 110 (246)
T PRK15233 57 STSFWIMNEKEYP--ILVQTQVYNDDKSSKAP------FIVTPPILKVESNARTRLKVIPTS 110 (246)
T ss_pred EEEEEEEcCCCCc--EEEEEEEecCCCCccCC------EEECCCeEEECCCCceEEEEEECC
Confidence 4788889998765 8999999865432 111 3222 4899999999998764
Done!