Query 010408
Match_columns 511
No_of_seqs 274 out of 1546
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 06:09:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010408.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010408hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3abz_A Beta-glucosidase I; gly 100.0 7E-113 2E-117 964.1 39.4 449 8-506 94-834 (845)
2 3zyz_A Beta-D-glucoside glucoh 100.0 3E-113 1E-117 953.3 35.6 469 8-507 105-711 (713)
3 2x41_A Beta-glucosidase; hydro 100.0 1E-111 4E-116 945.8 35.9 447 8-505 111-710 (721)
4 3rrx_A EXO-1,3/1,4-beta-glucan 100.0 1.1E-79 3.8E-84 685.7 22.7 339 8-371 154-619 (822)
5 1x38_A Beta-D-glucan exohydrol 100.0 2.1E-78 7.3E-83 664.8 23.7 330 8-366 139-601 (602)
6 3bmx_A Uncharacterized lipopro 100.0 1.2E-69 4.2E-74 598.8 21.1 315 8-368 168-640 (642)
7 3sql_A Glycosyl hydrolase fami 100.0 4.6E-44 1.6E-48 382.9 12.7 158 8-176 142-305 (535)
8 3tev_A Glycosyl hyrolase, fami 100.0 5.1E-44 1.7E-48 366.3 11.3 157 8-176 125-287 (351)
9 4gvf_A Beta-hexosaminidase; TI 100.0 4.8E-42 1.6E-46 350.8 10.3 156 8-175 112-272 (349)
10 2oxn_A Beta-hexosaminidase; TI 100.0 5.5E-42 1.9E-46 349.8 7.2 153 8-175 109-266 (340)
11 4g6c_A Beta-hexosaminidase 1; 100.0 1.8E-40 6.1E-45 339.4 10.6 156 8-175 124-283 (348)
12 3idu_A Uncharacterized protein 97.1 0.0016 5.6E-08 56.5 8.3 50 411-469 34-84 (127)
13 2l0d_A Cell surface protein; s 96.4 0.01 3.6E-07 50.4 7.9 62 411-494 20-83 (114)
14 2kut_A Uncharacterized protein 96.3 0.0029 9.9E-08 54.5 4.0 55 411-469 17-73 (122)
15 3isy_A Bsupi, intracellular pr 94.5 0.19 6.7E-06 42.9 9.3 68 411-493 19-99 (120)
16 4ep8_B Urease subunit beta; al 93.0 0.14 4.8E-06 41.8 5.2 51 412-466 20-82 (101)
17 4ac7_B Urease subunit beta; hy 91.4 0.26 8.8E-06 41.9 5.2 52 412-467 26-89 (126)
18 4ubp_B Protein (urease (chain 91.4 0.26 8.8E-06 41.9 5.2 52 412-467 26-89 (126)
19 1w8o_A Bacterial sialidase; 3D 89.3 0.88 3E-05 49.0 8.8 104 354-497 337-442 (601)
20 2e6j_A Hydin protein; PAPD, st 87.6 1.7 5.9E-05 35.7 7.6 61 411-477 27-87 (112)
21 1yew_A Particulate methane mon 87.6 1.3 4.4E-05 44.4 7.7 55 411-469 265-336 (382)
22 2x3c_A Toxic extracellular end 85.7 1.3 4.3E-05 44.8 6.7 62 411-474 37-116 (343)
23 3qbt_B Inositol polyphosphate 85.2 1.7 5.7E-05 38.0 6.5 54 412-469 45-100 (140)
24 3fsa_A Azurin; copper, cupredo 83.5 2.3 7.9E-05 36.4 6.4 55 413-468 28-100 (125)
25 3qga_A UREA2, fusion of urease 83.3 1.1 3.9E-05 41.6 4.6 51 413-467 126-188 (225)
26 1e9y_A Urease subunit alpha; h 82.0 1.1 3.8E-05 42.0 4.0 51 413-467 126-188 (238)
27 1cuo_A Protein (azurin ISO-2); 79.6 3.2 0.00011 35.6 6.0 56 413-468 28-100 (129)
28 2ccw_A Azurin II, AZN-2; elect 79.3 3.3 0.00011 35.5 6.0 53 413-468 28-100 (129)
29 1nwp_A Azurin; electron transp 78.7 3.9 0.00013 35.0 6.3 64 413-478 28-113 (128)
30 2iaa_C Azurin; quinoprotein, t 77.3 4.7 0.00016 34.5 6.4 63 413-477 27-111 (128)
31 2ys4_A Hydrocephalus-inducing 76.7 3.2 0.00011 34.9 5.1 58 411-479 42-99 (122)
32 3rfr_A PMOB; membrane, oxidore 71.7 5.4 0.00018 40.4 5.9 53 411-469 299-368 (419)
33 2qsv_A Uncharacterized protein 68.3 8.4 0.00029 35.9 6.3 50 411-469 135-185 (220)
34 1xf1_A C5A peptidase, SCP; hyd 65.4 6 0.0002 45.2 5.5 58 411-469 500-564 (926)
35 4gy7_A Urease; JACK bean, hydr 64.9 5.6 0.00019 44.9 5.0 49 412-466 151-213 (840)
36 3ay2_A Lipid modified azurin p 64.7 6.9 0.00024 35.1 4.7 23 454-477 125-150 (167)
37 2aan_A Auracyanin A; cupredoxi 64.1 17 0.00058 30.9 7.1 18 451-468 97-114 (139)
38 3kmh_A D-lyxose isomerase; cup 62.5 6.7 0.00023 37.2 4.3 47 417-469 130-186 (246)
39 4dzg_A PLIG; lysozyme inhibito 58.4 13 0.00045 31.0 5.0 43 454-496 35-95 (114)
40 3qis_A Inositol polyphosphate 58.0 26 0.00089 35.3 8.2 55 411-469 47-103 (366)
41 4ay0_A Chaperone protein CAF1M 53.6 34 0.0012 31.9 7.6 53 413-469 29-84 (218)
42 2qsv_A Uncharacterized protein 51.4 68 0.0023 29.5 9.4 51 412-473 21-72 (220)
43 3hrz_B Cobra venom factor; ser 50.1 44 0.0015 31.7 8.0 60 411-473 97-157 (252)
44 3q48_A Chaperone CUPB2; IG fol 46.2 54 0.0019 31.3 7.9 54 413-468 45-102 (257)
45 4djm_A DRAB; chaperone, PILI; 43.1 57 0.0019 30.8 7.4 52 413-468 39-91 (239)
46 4hs4_A Chromate reductase; tri 39.7 48 0.0016 30.1 6.2 55 208-273 62-121 (199)
47 2cal_A Rusticyanin; iron respi 38.9 79 0.0027 27.5 7.2 54 413-467 70-128 (154)
48 3lcm_A SMU.1420, putative oxid 38.8 40 0.0014 30.4 5.5 55 208-273 62-131 (196)
49 1qhq_A Protein (auracyanin); e 38.3 62 0.0021 27.2 6.4 17 453-469 98-114 (140)
50 1o66_A 3-methyl-2-oxobutanoate 37.9 41 0.0014 32.5 5.5 43 98-152 8-50 (275)
51 2q3z_A Transglutaminase 2; tra 37.4 35 0.0012 37.3 5.5 57 411-469 488-548 (687)
52 4g9s_B Inhibitor of G-type lys 36.7 74 0.0025 26.0 6.3 25 483-507 78-111 (111)
53 2co7_B SAFB chaperone, putativ 36.5 76 0.0026 29.5 7.1 51 413-468 29-81 (221)
54 1g0d_A Protein-glutamine gamma 34.5 47 0.0016 36.3 5.9 57 411-469 487-546 (695)
55 2hpv_A FMN-dependent NADH-azor 33.4 46 0.0016 29.8 5.0 38 209-257 84-121 (208)
56 4hci_A Cupredoxin 1; structura 33.1 85 0.0029 24.7 6.0 16 453-468 61-76 (100)
57 3ha2_A NADPH-quinone reductase 32.3 61 0.0021 28.9 5.5 56 208-274 40-105 (177)
58 2xwx_A GBPA, glcnac-binding pr 31.9 1.1E+02 0.0037 31.1 7.8 61 411-495 312-372 (391)
59 3p0r_A Azoreductase; structura 31.8 51 0.0017 30.1 5.0 55 209-274 82-151 (211)
60 1t5b_A Acyl carrier protein ph 31.5 66 0.0023 28.3 5.7 52 211-273 78-144 (201)
61 4fxk_B Complement C4-A alpha c 31.4 59 0.002 35.9 6.3 55 411-469 169-224 (767)
62 1vjj_A Protein-glutamine gluta 30.1 59 0.002 35.6 5.7 57 411-469 497-556 (692)
63 2lv4_A Putative outer membrane 29.6 1.2E+02 0.004 25.7 6.2 66 442-508 47-134 (146)
64 1rli_A Trp repressor binding p 29.6 71 0.0024 27.7 5.5 54 208-272 60-126 (184)
65 3fvw_A Putative NAD(P)H-depend 29.6 87 0.003 27.9 6.1 40 207-257 55-94 (192)
66 1iby_A Nitrosocyanin; RED copp 29.2 66 0.0023 25.9 4.8 40 413-468 47-86 (112)
67 2hr0_B Complement C3 alpha' ch 28.8 1.5E+02 0.0053 33.3 9.3 57 411-469 96-154 (915)
68 3gfu_C Chaperone protein FAEE; 28.4 1.5E+02 0.0051 27.6 7.6 52 413-468 17-71 (224)
69 1oy0_A Ketopantoate hydroxymet 28.1 27 0.00092 34.0 2.4 42 98-151 25-66 (281)
70 1g43_A Scaffolding protein; be 28.1 24 0.00082 31.3 1.9 34 448-482 97-132 (160)
71 3u7i_A FMN-dependent NADH-azor 27.6 73 0.0025 29.4 5.3 38 210-258 85-122 (223)
72 1ex0_A Coagulation factor XIII 27.3 66 0.0023 35.4 5.5 56 411-469 532-591 (731)
73 1rtt_A Conserved hypothetical 27.0 61 0.0021 28.7 4.5 54 208-272 61-119 (193)
74 3f2v_A General stress protein 26.9 64 0.0022 29.2 4.7 56 208-274 47-113 (192)
75 3svl_A Protein YIEF; E. coli C 26.8 1.3E+02 0.0045 26.8 6.9 40 208-258 61-100 (193)
76 4b9f_A Cellulosomal-scaffoldin 26.6 36 0.0012 29.9 2.7 35 448-483 94-128 (152)
77 1d4a_A DT-diaphorase, quinone 26.5 88 0.003 29.7 5.8 55 208-273 82-151 (273)
78 1klf_A FIMC chaperone, chapero 24.9 1.7E+02 0.0057 26.7 7.2 52 413-467 17-69 (205)
79 2pn5_A TEP1R, thioester-contai 24.8 1.8E+02 0.006 34.3 9.1 62 411-473 681-744 (1325)
80 1l4i_A SFAE protein; periplasm 24.7 1.2E+02 0.0042 27.6 6.2 51 413-466 17-68 (206)
81 3tem_A Ribosyldihydronicotinam 24.6 1E+02 0.0035 28.5 5.8 55 208-273 81-150 (228)
82 3zqx_A Cellulose 1,4-beta-cell 24.3 20 0.00067 31.4 0.6 35 448-483 81-116 (146)
83 2amj_A Modulator of drug activ 23.4 1.6E+02 0.0054 26.5 6.7 38 209-257 60-97 (204)
84 3k1y_A Oxidoreductase; structu 23.2 83 0.0028 28.3 4.7 53 207-270 73-127 (191)
85 1sqs_A Conserved hypothetical 22.2 1.1E+02 0.0038 28.2 5.5 55 208-273 68-128 (242)
86 3r6w_A FMN-dependent NADH-azor 21.3 1.2E+02 0.004 27.3 5.3 37 210-257 78-114 (212)
87 3zuc_A Cellulosomal scaffoldin 21.2 36 0.0012 30.0 1.6 34 449-483 90-125 (153)
88 3vku_A L-LDH, L-lactate dehydr 20.8 37 0.0013 33.6 1.9 56 216-276 73-130 (326)
89 2l1n_A Uncharacterized protein 20.3 29 0.001 29.0 0.8 15 132-146 81-95 (120)
90 3e9t_A Na/Ca exchange protein; 20.2 2.3E+02 0.0079 23.0 6.5 54 414-469 21-76 (114)
No 1
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A*
Probab=100.00 E-value=6.6e-113 Score=964.05 Aligned_cols=449 Identities=31% Similarity=0.501 Sum_probs=376.3
Q ss_pred ceee-ecccccccCCCCCcccccccCCCHHHHHHHHHHHHHHHhcCCCCCCcEEEeecccccCCccCCCCCCcccccccc
Q 010408 8 GLTY-WSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNARV 86 (511)
Q Consensus 8 Gi~~-~aP~vdi~r~Pr~gR~~EsfgEDP~l~~~~a~a~v~G~Q~~~~~~~~V~a~~KHF~g~g~~~~~~~~r~~~~~~~ 86 (511)
|+|+ |||++||+|||+|||++|||||||+|+++||.|+|+|||++ ||+||+|||||||++ ++|+..++++
T Consensus 94 Gi~~~laP~vdi~r~P~~gR~~EsfgeDP~lv~~~a~a~v~GlQ~~-----gV~a~~KHFpg~g~e----~~r~~~~~~v 164 (845)
T 3abz_A 94 NAAVILGPTTNMQRGPLGGRGFESFSEDPYLAGMATSSVVKGMQGE-----GIAATVKHFVCNDLE----DQRFSSNSIV 164 (845)
T ss_dssp TCSEEECCBCCCCSSTTCTTGGGSCCSSHHHHHHHHHHHHHHHHHT-----TCBCEEEEETTCCCC----TTTTTCEEEC
T ss_pred CCCEEecceECCCcCCCCCcccccCCCCHHHHHHHHHHHHHHHhhC-----CeeEEeeccccCCcc----cCCccccCCC
Confidence 8999 99999999999999999999999999999999999999998 899999999999975 3577778899
Q ss_pred CHhHHHhhcCHHHHHHHHhCCcceeEeeccCCCCccCccChHHHHHhhhhhcCCCcEEECCCCccccc-----------c
Q 010408 87 SKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVL-----------Y 155 (511)
Q Consensus 87 s~~~L~e~~L~PF~~ai~~g~~~sVM~syn~vng~pa~~s~~ll~~lLR~e~gF~G~VvSD~~~~~~~-----------~ 155 (511)
++++|+|+||+||++||+++++++||||||++||+|||+|++||++|||+||||+|+|||||+++... +
T Consensus 165 ~~~~L~e~~L~PF~~ai~~ag~~~VM~syn~ing~pa~~s~~ll~~lLR~e~GF~G~VvSD~~~~~~~~~Al~AG~D~~m 244 (845)
T 3abz_A 165 SERALREIYLEPFRLAVKHANPVCIMTAYNKVNGEHCSQSKKLLIDILRDEWKWDGMLMSDWFGTYTTAAAIKNGLDIEF 244 (845)
T ss_dssp CHHHHHHTTSHHHHHHHHHHCCSEEEECSSEETTEEGGGCHHHHTCCCCCCTCCCSEEECCTTCCCCSHHHHHHTCCBBC
T ss_pred CHHHHHHhhHHHHHHHHHhcCCCEEEecCCCcCCEeccCCHHHHHHHHhhccCCCeEEEcccccHHHHHHHHHcCCCccc
Confidence 99999999999999999744599999999999999999999999999999999999999999876531 1
Q ss_pred c-CCCC-C-----------C--C---HHHHHHHch------h-----------------cc-------------------
Q 010408 156 N-TQHY-T-----------R--T---PEEAAADAI------K-----------------AG------------------- 175 (511)
Q Consensus 156 ~-~~~~-~-----------~--~---~~~a~~~ai------~-----------------AG------------------- 175 (511)
. ...+ . . + ..+++.+.+ . -+
T Consensus 245 ~~~~~~~~~~~l~~av~~G~~i~~~~id~av~RIL~~k~~~g~l~~~~~~p~~~~~~~~~~~~~~~~la~~~a~~sivLL 324 (845)
T 3abz_A 245 PGPTRWRTRALVSHSLNSREQITTEDVDDRVRQVLKMIKFVVDNLEKTGIVENGPESTSNNTKETSDLLRKIAADSIVLL 324 (845)
T ss_dssp SSSCSSCCHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHHTHHHHCCCTTCCCCCTTCSHHHHHHHHHHHHHHCEEE
T ss_pred CCchhhhHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHHhCCccccccCCccCccccccCCHHHHHHHHHHHHhCcEEe
Confidence 0 0001 0 0 0 011111000 0 00
Q ss_pred -----------------------------------ccCCccchhhhhhhhe--eeeccCCcccc----------------
Q 010408 176 -----------------------------------VACGYTTPLQGISRYA--KTIHQAGCFGV---------------- 202 (511)
Q Consensus 176 -----------------------------------~~~~~~~~l~~~~~~~--~~~~~~G~~~~---------------- 202 (511)
.|.+.++|+++|++.. .+.|..||...
T Consensus 325 KN~~~~LPL~~~~~iaviGp~A~~~~~~Gggs~~~~~~~~vtpl~gi~~~~~~~v~y~~G~~~~~~~~~~~~~~~~~~~~ 404 (845)
T 3abz_A 325 KNKNNILPLKKEDNIIVIGPNAKAKTSSGGGSASMNSYYVVSPYEGIVNKLGKEVDYTVGAYSHKSIGGLAESSLIDAAK 404 (845)
T ss_dssp EECTTCCSCCTTSCEEEESTTTSCCCCSCBSTTCCCBSCCCCHHHHHHHHHTSCCEEECCCCCCSSCCBSGGGEESSTTS
T ss_pred ccCCcccCCCCCCEEEEEcCCcchhhccCCCccCcccCCcCCHHHHHHHhhcCceeeccccccccccccccccccccccc
Confidence 2445678888887652 23444433100
Q ss_pred --------------------c-----------------------------------------------------------
Q 010408 203 --------------------A----------------------------------------------------------- 203 (511)
Q Consensus 203 --------------------~----------------------------------------------------------- 203 (511)
.
T Consensus 405 ~~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~ 484 (845)
T 3abz_A 405 PADAENSGLIAKFYSNPVEERSDDEEPFHVTKVNRSNVHLFDFKHEKVDPKNPYFFVTLTGQYVPQEDGDYIFSLQVYGS 484 (845)
T ss_dssp CSCTTTBSEEEEEESSCTTTSCTTCCCSEEEEECSSEEECTTCCCTTSBTTBCCCEEEEEEEECCSSSEEEEEEEEEESE
T ss_pred cccCCCCceEEEEeccCcccCcccccceeeeeccccceeecccccccccccccceeEEEEEEEecCCCccEEEEEeecCc
Confidence 0
Q ss_pred ------------------------------------------------c------------------------CC-cchH
Q 010408 204 ------------------------------------------------C------------------------NG-NQLI 210 (511)
Q Consensus 204 ------------------------------------------------~------------------------~~-~~~~ 210 (511)
. .. ...+
T Consensus 485 ~~l~idg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~y~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (845)
T 3abz_A 485 GLFYLNDELIIDQKHNQERGSFCFGAGTKERTKKLTLKKGQVYNVRVEYGSGPTSGLVGEFGAGGFQAGVIKAIDDDEEI 564 (845)
T ss_dssp EEEEETTEEEEEESSSCCBCSTTTTTSBCCEEEEEEECTTCCEEEEEEEECTTTSCCSSCCCCCEEEEEEEECCCHHHHH
T ss_pred eEEEECCEEEeeccccccccccccccCcccceeEEEecCCceeeEEEEeccCCcccccccccccceeecccccccchhhH
Confidence 0 00 1347
Q ss_pred HHHHHHHhhCCEEEEEeccCCCCccccCCCCCCCCChhHHHHHHHHHHhCCCCEEEEEeCCceEEccCccCCCCccEEEE
Q 010408 211 GAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILW 290 (511)
Q Consensus 211 ~~a~~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~va~~~~kpvVvVl~~g~P~~l~~~~~~~~v~Ail~ 290 (511)
++|+++|++||+||||+|+++.+|+||.||.+|.||+.|.+||++|+++ +||||||+++|+|++|+|+ ++++|||+
T Consensus 565 ~~Av~~A~~ADvvVv~vG~~~~~e~Eg~DR~~l~LP~~Q~~LI~aV~a~-~~~tVVVl~sG~pv~m~w~---~~v~AIL~ 640 (845)
T 3abz_A 565 RNAAELAAKHDKAVLIIGLNGEWETEGYDRENMDLPKRTNELVRAVLKA-NPNTVIVNQSGTPVEFPWL---EDANALVQ 640 (845)
T ss_dssp HHHHHHHHTSSEEEEEEECCTTTSBTTBCCSSSCCCTTHHHHHHHHHHH-CSCEEEEEECSSCCCCTTG---GGCSEEEE
T ss_pred HHHHHHHhcCCEEEEEEecCCccccccCCcccccCCHHHHHHHHHHHHh-CCCEEEEEeCCCcccCcch---hccCeEEE
Confidence 7899999999999999999999999999999999999999999999975 5799999999999999987 47999999
Q ss_pred ecCCChhHHHHHHHHHcCCCCCCeecCceecccccCCCCCCccccccc---cCCCCC---CcccccC---CCcccccCcC
Q 010408 291 VGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRA---ARGYPG---RTYRFYK---GPVVFPFGHG 361 (511)
Q Consensus 291 a~~pG~e~g~AiAdVL~G~~nPsGkLPvT~~p~~~~~~~p~~~~~~~~---~~~~~~---~~Yr~~~---~~~lypFG~G 361 (511)
+|||||++|+||||||||++|||||||+|| |++. +|+|.++. +.. ...|.+ .+||||+ .+|+||||||
T Consensus 641 aw~pGqegG~AiAdVLfG~vNPSGkLP~T~-p~~~-~d~P~~~~-~~~~~g~~~y~eg~~vgYR~y~~~~~~plfPFG~G 717 (845)
T 3abz_A 641 AWYGGNELGNAIADVLYGDVVPNGKLSLSW-PFKL-QDNPAFLN-FKTEFGRVIYGEDIFVGYRYYEKLQRKVAFPFGYG 717 (845)
T ss_dssp CCCCCTTHHHHHHHHHTTSSCCCCCCSSCB-CSSG-GGSTTTTS-CSCBTTEEECTTTTCCTHHHHHHHTCCCSBCTTCC
T ss_pred cCCCcHHHHHHHHHHhcCCcCCCCCCceee-eCch-hhCCcccc-CCCCCCceeccCCccCCCcchhcCCCceeecccCC
Confidence 999999999999999999999999999997 9987 78886532 211 111222 3699997 5899999999
Q ss_pred CCcCCceec--ccccCCCccccccccccccccccccccceeeccccCCCceeEEEEEEEEeCC-CCCcceEEEEEeeCCC
Q 010408 362 MSYTTFAHT--LSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTG-DMAGTHTLLVFAKPPA 438 (511)
Q Consensus 362 LSYTtF~ys--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~V~NtG-~~~G~evvQlY~~~~~ 438 (511)
||||||+|+ +++++ + . .++|+|+||||| +++|+||||||+++|.
T Consensus 718 LSYTtF~ys~~~l~v~-------------------------------~-~-~~~v~v~V~NtG~~~~G~eVvQlYv~~~~ 764 (845)
T 3abz_A 718 LSYTTFELDISDFKVT-------------------------------D-D-KIAISVDVKNTGDKFAGSEVVQVYFSALN 764 (845)
T ss_dssp BCSSCEEEEEEEEEEC-------------------------------S-S-EEEEEEEEEECCSSCCEEEEEEEEEEESS
T ss_pred CcceeEEEeccccccc-------------------------------C-C-eEEEEEEEEECCcCCCcceeeeeeEeCCC
Confidence 999999999 98741 0 1 689999999999 9999999999999998
Q ss_pred CC-CCcccccccccccccCCCCeEEEEEEec-CCCCeeEEeCC-CCEEecCeEEEEEEeCCCceEEEEEEE
Q 010408 439 GN-WSPNKQLIGFKKVHVTAGALQSVRLDIH-VCKHLSVVDKF-GIRRIPMGEHSLHIGDLKHSISLQANL 506 (511)
Q Consensus 439 ~~-~~P~k~L~gF~kv~L~pGe~~~v~~~l~-~~~~ls~~d~~-~~~~~~~G~y~i~vG~ss~~~~~~~~~ 506 (511)
++ .+|+||||||+||+|+|||+++|+|+|+ . ++|++||.. +.|++|+|+|+|+||.||++++++..+
T Consensus 765 ~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~-~~l~~~d~~~~~~~~e~G~y~v~vG~ss~di~l~~~~ 834 (845)
T 3abz_A 765 SKVSRPVKELKGFEKVHLEPGEKKTVNIDLELK-DAISYFNEELGKWHVEAGEYLVSVGTSSDDILSVKEF 834 (845)
T ss_dssp CSSCCCSCEEEEEEEEEECTTCEEEEEEEEEHH-HHHCEEETTTTEEEECSEEEEEEEESSTTCEEEEEEE
T ss_pred CCcchhhheeccceeEEECCCCEEEEEEEeCCh-HHeeEEecCCCeEEEcCCEEEEEEECCCCCceeEEEE
Confidence 87 8999999999999999999999999999 8 899999996 789999999999999999998876543
No 2
>3zyz_A Beta-D-glucoside glucohydrolase; HET: NAG BGC; 2.10A {Hypocrea jecorina} PDB: 3zz1_A* 4i8d_A*
Probab=100.00 E-value=3.5e-113 Score=953.28 Aligned_cols=469 Identities=26% Similarity=0.402 Sum_probs=371.1
Q ss_pred ceee-eccccc-ccCCCCCcccccccCCCHHHHHHHHHHHHHHHhcCCCCCCcEEEeecccccCCccCCCCCCccccccc
Q 010408 8 GLTY-WSPNVN-IFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNAR 85 (511)
Q Consensus 8 Gi~~-~aP~vd-i~r~Pr~gR~~EsfgEDP~l~~~~a~a~v~G~Q~~~~~~~~V~a~~KHF~g~g~~~~~~~~r~~~~~~ 85 (511)
|+|+ |||++| |.|||||||++|||||||+|+++|+.|+|+|||++ ||+||+|||||||++. +|...++.
T Consensus 105 Gi~~~laP~vd~v~r~P~~gR~~e~fgeDP~l~~~~a~a~v~Glq~~-----gV~a~~KHF~g~g~e~----~r~~~~~~ 175 (713)
T 3zyz_A 105 GIHVILGPVAGPLGKTPQGGRNWEGFGVDPYLTGIAMGQTINGIQSV-----GVQATAKHYILNEQEL----NRETISSN 175 (713)
T ss_dssp TCSEECCCBCSSCCCSTTCTTGGGTTCSCHHHHHHHHHHHHHHHHHT-----TCEEEEEEETTCCCST----TTTTCEEC
T ss_pred CCCEEECCeecccCCCCCCCcccccccCCHHHHHHHHHHHHHHHhhC-----CeEEEEecCccCCccc----cCccccCc
Confidence 8999 999999 88999999999999999999999999999999998 8999999999999763 46667889
Q ss_pred cCHhHHHhhcCHHHHHHHHhCCcceeEeeccCCCCccCccChHHHHHhhhhhcCCCcEEECCCCcccccc----------
Q 010408 86 VSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLY---------- 155 (511)
Q Consensus 86 ~s~~~L~e~~L~PF~~ai~~g~~~sVM~syn~vng~pa~~s~~ll~~lLR~e~gF~G~VvSD~~~~~~~~---------- 155 (511)
+++++|+|+||+||+++|++| +++||||||++||+|||.|++||++|||+||||+|+|||||++++...
T Consensus 176 v~~~~l~e~~l~pF~~ai~ag-~~~VM~syn~vng~pa~~s~~ll~~iLR~e~GF~G~VvSD~~a~~~~~~ai~AG~D~~ 254 (713)
T 3zyz_A 176 PDDRTLHELYTWPFADAVQAN-VASVMCSYNKVNTTWACEDQYTLQTVLKDQLGFPGYVMTDWNAQHTTVQSANSGLDMS 254 (713)
T ss_dssp CCHHHHHHTTTHHHHHHHHTT-CSEEEECSSEETTEEGGGCHHHHCCCCCCCSCCCSEEEESTTCCCCSHHHHHHTCCBB
T ss_pred CCHHHHHHhhhHHHHHHHHcC-CCeEEeeccccCCccCcCCHHHHHHHHHHHcCCCEEEEecCccHHHHHHHHHcCCCEe
Confidence 999999999999999999977 999999999999999999999999999999999999999998865321
Q ss_pred -cCCCCC---CCHHHHHHHchhcc-----------------------c--------------------------------
Q 010408 156 -NTQHYT---RTPEEAAADAIKAG-----------------------V-------------------------------- 176 (511)
Q Consensus 156 -~~~~~~---~~~~~a~~~ai~AG-----------------------~-------------------------------- 176 (511)
....+. ....+.+..|++.| .
T Consensus 255 m~~~~~~~~~~~~~~~l~~av~~G~i~~~~id~av~RIL~~k~~lg~~~~~~~~~~~~~~~~~~h~~la~~~a~~sivLL 334 (713)
T 3zyz_A 255 MPGTDFNGNNRLWGPALTNAVNSNQVPTSRVDDMVTRILAAWYLTGQDQAGYPSFNISRNVQGNHKTNVRAIARDGIVLL 334 (713)
T ss_dssp SSSSCTTSCCCCSTHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHTTTTSTTCCCCCTTSCCCTTTHHHHHHHHHHTCEEE
T ss_pred CCCCcccchhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCcccCCCCcccccccCHHHHHHHHHhhhcceEEE
Confidence 111110 01125567777777 0
Q ss_pred -cCCccchhhhhhhheee-ecc--------------CCc-----------ccc-----------------------ccCC
Q 010408 177 -ACGYTTPLQGISRYAKT-IHQ--------------AGC-----------FGV-----------------------ACNG 206 (511)
Q Consensus 177 -~~~~~~~l~~~~~~~~~-~~~--------------~G~-----------~~~-----------------------~~~~ 206 (511)
+...++||..-++.+-+ ... .+| ... ....
T Consensus 335 KN~~~~LPL~~~~~IaViG~~A~~~~~G~~~~~~~~~~~~~~~~~~g~gs~~~~~~~~~t~~~~i~~~~~~~g~~v~~~~ 414 (713)
T 3zyz_A 335 KNDANILPLKKPASIAVVGSAAIIGNHARNSPSCNDKGCDDGALGMGWGSGAVNYPYFVAPYDAINTRASSQGTQVTLSN 414 (713)
T ss_dssp EEGGGCCSCCCCSEEEEESGGGSCCTTTTTCTTSGGGCCCCSSCCCCBSTTCCCCSCCCCHHHHHHHHHHTTTCEEEEEC
T ss_pred ccCCCccccCCCCEEEEECCCccccccccccccccccccccCceecccCCCCcCcCCCCCHHHHHHHHhccCCeEEEEeC
Confidence 00112222211110000 000 000 000 0001
Q ss_pred cchHHHHHHHHhhCCEEEEEeccCCCCccccC--------CCCCCCCChhHHHHHHHHHHhCCCCEEEEEeCCceEEc-c
Q 010408 207 NQLIGAAEVAARQADATVLVMGLDQSIEAEFI--------DRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDV-S 277 (511)
Q Consensus 207 ~~~~~~a~~~a~~aD~vVv~vG~~~~~e~Eg~--------Dr~~l~Lp~~q~~Li~~va~~~~kpvVvVl~~g~P~~l-~ 277 (511)
...+++|+++|+++|++|+++|.. ++|+. ||.+|.||+.|.+||++|++. ++|+|||+++|+|++| +
T Consensus 415 ~~~~~~a~~~A~~aDv~Iv~vg~~---~gEg~~~~~g~~gDR~~l~Lp~~Q~~Li~~v~~~-~~~~VVVl~sG~p~~~~~ 490 (713)
T 3zyz_A 415 TDNTSSGASAARGKDVAIVFITAD---SGEGYITVEGNAGDRNNLDPWHNGNALVQAVAGA-NSNVIVVVHSVGAIILEQ 490 (713)
T ss_dssp SCCHHHHHHHHTTCSEEEEEEEEC---CBCTTCCBTTBCSSCSCSSCSTTHHHHHHHHHHH-CSCEEEEEEESSCCCCHH
T ss_pred CccHHHHHHHhhcCCEEEEEeccc---CCCCccccccCCCCcccccCChhHHHHHHHHHHh-CCCeEEEEecCCcccchh
Confidence 234678899999999999999964 45665 999999999999999999975 5799999999999999 6
Q ss_pred CccCCCCccEEEEecCCChhHHHHHHHHHcCCCCCCeecCceecccccCCCCCCccccccccCCCCC---CcccccCC--
Q 010408 278 FAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPG---RTYRFYKG-- 352 (511)
Q Consensus 278 ~~~~~~~v~Ail~a~~pG~e~g~AiAdVL~G~~nPsGkLPvT~~p~~~~~~~p~~~~~~~~~~~~~~---~~Yr~~~~-- 352 (511)
|+ +.++++|||++|+|||++|+||||||||++|||||||+|| |++. +|+|... ++.+...|.+ ++||||+.
T Consensus 491 w~-~~~~v~Ail~aw~pGqegG~AiAdvL~G~~nPSGkLP~T~-p~~~-~d~p~~~-~~~~~~~y~eg~~vgYRy~d~~~ 566 (713)
T 3zyz_A 491 IL-ALPQVKAVVWAGLPSQESGNALVDVLWGDVSPSGKLVYTI-AKSP-NDYNTRI-VSGGSDSFSEGLFIDYKHFDDAN 566 (713)
T ss_dssp HH-TCTTEEEEEECCCCGGGHHHHHHHHHTTSSCCCCCCSSCB-CSCG-GGSSCCC-CCSSEECCTTTTCCHHHHHHHTT
T ss_pred hh-hccccCEEEEcCCCCchhhheehhhhcCCcCCCccCccee-cCCh-hhCCCcc-ccCCccccCCCCccCceeccCCC
Confidence 75 4578999999999999999999999999999999999997 8886 7788432 1112224443 58999985
Q ss_pred -CcccccCcCCCcCCceecccccCCCccccccccccccccccccccceeeccccCCCceeEEEEEEEEeCCCCCcceEEE
Q 010408 353 -PVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLL 431 (511)
Q Consensus 353 -~~lypFG~GLSYTtF~ys~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~V~NtG~~~G~evvQ 431 (511)
+|+||||||||||||+|+++++++.. . .. .+.......+...+.+. .++|+|+|||||+++|+||||
T Consensus 567 ~~plypFG~GLSYTtF~ys~l~~~~~~-~--~~--------~~~~~~~~gg~~~~~~~-~~~vsv~VtNtG~~~G~EVvQ 634 (713)
T 3zyz_A 567 ITPRYEFGYGLSYTKFNYSRLSVLSTA-K--SG--------PATGAVVPGGPSDLFQN-VATVTVDIANSGQVTGAEVAQ 634 (713)
T ss_dssp CCCSBCTTCCBCSSCEEEEEEEEEECC-C--CE--------ECCSCEETTEETTTTSE-EEEEEEEEEECSSSCEEEEEE
T ss_pred CceeecCCCCCCcccEEEeeeEecccc-c--cC--------cccccccccccccccCC-eEEEEEEEEeCCCCccceeee
Confidence 79999999999999999999975310 0 00 00000000000001122 699999999999999999999
Q ss_pred EEeeCCCCC-CCcccccccccccccCCCCeEEEEEEecCCCCeeEEeCC-CCEEecCeEEEEEEeCCCceEEEEEEEc
Q 010408 432 VFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKF-GIRRIPMGEHSLHIGDLKHSISLQANLE 507 (511)
Q Consensus 432 lY~~~~~~~-~~P~k~L~gF~kv~L~pGe~~~v~~~l~~~~~ls~~d~~-~~~~~~~G~y~i~vG~ss~~~~~~~~~~ 507 (511)
||+++|.++ .+|+||||||+||+|+|||+++|+|+|++ ++|++||.. +.|++|+|+|+|+||+||++++++..++
T Consensus 635 lYv~~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~-~~ls~~d~~~~~w~ve~G~y~v~vG~sS~d~~l~~~~~ 711 (713)
T 3zyz_A 635 LYITYPSSAPRTPPKQLRGFAKLNLTPGQSGTATFNIRR-RDLSYWDTASQKWVVPSGSFGISVGASSRDIRLTSTLS 711 (713)
T ss_dssp EEEECCTTSSSCCSCEEEEEEEEEECTTCEEEEEEEEEG-GGGCEEETTTTEEEECCEEEEEEEESSSSCEEEEEEEE
T ss_pred eeeecCCCCCCchhHHhhhcccceeCCCCeEEEEEEEcH-HHeeeeecCCCeEEEcCceEEEEEECCCCCcceeEEEE
Confidence 999999887 99999999999999999999999999998 999999986 7899999999999999999999877653
No 3
>2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A*
Probab=100.00 E-value=1.1e-111 Score=945.82 Aligned_cols=447 Identities=30% Similarity=0.478 Sum_probs=370.6
Q ss_pred ceee-ecccccccCCCCCcccccccCCCHHHHHHHHHHHHHHHhcCCCCCCcEEEeecccccCCccCCCCCCcccccccc
Q 010408 8 GLTY-WSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNARV 86 (511)
Q Consensus 8 Gi~~-~aP~vdi~r~Pr~gR~~EsfgEDP~l~~~~a~a~v~G~Q~~~~~~~~V~a~~KHF~g~g~~~~~~~~r~~~~~~~ 86 (511)
|+|+ |||++||+|||+|||++|||||||+|+++|+.|+|+|||++ ||+||+|||||||++ +.|...++++
T Consensus 111 Gi~~~~aP~vdi~r~p~~gR~~e~fgeDP~l~~~~a~a~v~G~q~~-----gV~a~~KHF~g~g~e----~~r~~~ds~~ 181 (721)
T 2x41_A 111 GVDVLLAPAMNIHRNPLCGRNFEYYSEDPVLSGEMASSFVKGVQSQ-----GVGACIKHFVANNQE----TNRMVVDTIV 181 (721)
T ss_dssp TCSEECCCBCCCCCSTTCTTGGGSCCSSHHHHHHHHHHHHHHHHTT-----TCBCEEEEETTCCCC----TTTTTCEEEC
T ss_pred CCCEEeeceECCCCCCCCCcccccCCCCHHHHHHHHHHHHHHhhhC-----CeEEEecccccCCCC----CCCCcccCCC
Confidence 8999 99999999999999999999999999999999999999998 899999999999965 3566778999
Q ss_pred CHhHHHhhcCHHHHHHHHhCCcceeEeeccCCCCccCccChHHHHHhhhhhcCCCcEEECCCCcccccc-----------
Q 010408 87 SKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLY----------- 155 (511)
Q Consensus 87 s~~~L~e~~L~PF~~ai~~g~~~sVM~syn~vng~pa~~s~~ll~~lLR~e~gF~G~VvSD~~~~~~~~----------- 155 (511)
++++|+|+||+||++||+++++++||||||.+||+|||.|++||++|||+||||+|+|||||++++...
T Consensus 182 ~~~~l~e~~l~pF~~ai~~a~~~~vM~sy~~i~g~pa~~s~~ll~~lLR~e~GF~G~VvSD~~~~~~~~~al~AG~D~~m 261 (721)
T 2x41_A 182 SERALREIYLRGFEIAVKKSKPWSVMSAYNKLNGKYCSQNEWLLKKVLREEWGFEGFVMSDWYAGDNPVEQLKAGNDLIM 261 (721)
T ss_dssp CHHHHHHTHHHHHHHHHHHHCCSEEEECSSEETTEEGGGCHHHHTCCCCCCTCCCSEEEECTTCSSCHHHHHHHTCCBBC
T ss_pred CHHHHHhhhHHHHHHHHHhcCCCEEEecCCCCCCccccCCHHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHcCCCccc
Confidence 999999999999999999555999999999999999999999999999999999999999998875321
Q ss_pred cCCCCC-----CCHHHHHHHchhcc-----------------------------------------------------c-
Q 010408 156 NTQHYT-----RTPEEAAADAIKAG-----------------------------------------------------V- 176 (511)
Q Consensus 156 ~~~~~~-----~~~~~a~~~ai~AG-----------------------------------------------------~- 176 (511)
...... ...-+++..|++.| +
T Consensus 262 ~~~~~~~~~~~~~~~~~l~~av~~G~i~~~~id~av~Ril~~k~~~gl~~~~~~~~~~~~~~h~~la~~~A~esiVLLKN 341 (721)
T 2x41_A 262 PGKAYQVNTERRDEIEEIMEALKEGKLSEEVLDECVRNILKVLVNAPSFKNYRYSNKPDLEKHAKVAYEAGAEGVVLLRN 341 (721)
T ss_dssp SCCGGGTCTTCCCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTSGGGGTCCCCSCCCHHHHHHHHHHHHHHHCEEEEE
T ss_pred CCCcccccchhHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHhCCCCCCCcccccCCHHHHHHHHHHHHhchhhhcC
Confidence 000000 01125666777777 1
Q ss_pred ---------------------------------cCCccchhhhhhhh-ee------eecc-------------CC---cc
Q 010408 177 ---------------------------------ACGYTTPLQGISRY-AK------TIHQ-------------AG---CF 200 (511)
Q Consensus 177 ---------------------------------~~~~~~~l~~~~~~-~~------~~~~-------------~G---~~ 200 (511)
+.+.++|+++|++. .. +.|. .| +.
T Consensus 342 ~~~LPL~~~~kIaviG~~A~~~~~~g~gs~~~~~~~~vt~~~gl~~~G~~~~~~~~v~y~~~~~~~~~~~~~~~G~~~~~ 421 (721)
T 2x41_A 342 EEALPLSENSKIALFGTGQIETIKGGTGSGDTHPRYAISILEGIKERGLNFDEELAKTYEDYIKKMRETEEYKPRRDSWG 421 (721)
T ss_dssp SSCCSCCTTCCEEEESGGGTSCCCSCBSTTCCCCSCCCCHHHHHHHTTCCBCHHHHHHHHHHHHHHHHSTTTSCBC----
T ss_pred CCcCCCCCCCEEEEEecCCcCccccCCCCCCcCcCCCCCHHHHHHHhccCCCCceEEEEeecccccccccccCCCcccee
Confidence 11223444444443 11 2232 22 21
Q ss_pred cc--ccCCcchH--HHHHHHHhhCCEEEEEeccCCCCccccCCCC----CCCCChhHHHHHHHHH----HhCCCCEEEEE
Q 010408 201 GV--ACNGNQLI--GAAEVAARQADATVLVMGLDQSIEAEFIDRA----GLLLPGRQQELVSRVA----KASRGPVVLVL 268 (511)
Q Consensus 201 ~~--~~~~~~~~--~~a~~~a~~aD~vVv~vG~~~~~e~Eg~Dr~----~l~Lp~~q~~Li~~va----~~~~kpvVvVl 268 (511)
.. .......+ ++|+++|+++|+|||++|.+ ++|+.||. +|.||..|.+||++|+ + .++|+|||+
T Consensus 422 ~~~~~~~~~~~~~~~~a~~~a~~aDvvIv~vg~~---~gEg~Dr~~~~~~l~Lp~~q~~LI~~v~~~~~~-~~~~vVVVl 497 (721)
T 2x41_A 422 TIIKPKLPENFLSEKEIHKLAKKNDVAVIVISRI---SGEGYDRKPVKGDFYLSDDETDLIKTVSREFHE-QGKKVIVLL 497 (721)
T ss_dssp -CBCCCCCSCCSCHHHHHHHHHHCSEEEEEEECC---CBTTCCCCSSBTTTBCCHHHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred ccccCCCchhhhcHHHHHHHHhcCCEEEEEEecc---ccccccccCCCCCccCCHHHHHHHHHHHHHHHH-hCCCEEEEE
Confidence 00 01112334 78889999999999999977 78999999 9999999999999998 6 467999999
Q ss_pred eCCceEEc-cCccCCCCccEEEEecCCChhHHHHHHHHHcCCCCCCeecCceecccccCCCCCCcccccccc-----CCC
Q 010408 269 MCGGPVDV-SFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAA-----RGY 342 (511)
Q Consensus 269 ~~g~P~~l-~~~~~~~~v~Ail~a~~pG~e~g~AiAdVL~G~~nPsGkLPvT~~p~~~~~~~p~~~~~~~~~-----~~~ 342 (511)
++|+|++| +|+ ++++|||++|+|||++|+|+||||||++|||||||+|| |++. +++|..++...+. ..|
T Consensus 498 ~~g~P~~l~~~~---~~v~AiL~a~~pG~egg~AlAdVL~G~vnPSGkLPvT~-p~~~-~~~p~~~~~~~~~~~~~~~~y 572 (721)
T 2x41_A 498 NIGSPVEVVSWR---DLVDGILLVWQAGQETGRIVADVLTGRINPSGKLPTTF-PRDY-SDVPSWTFPGEPKDNPQKVVY 572 (721)
T ss_dssp ECSSCCCCTTTG---GGCSEEEECCCCGGGHHHHHHHHHHTSSCCCCCCSSCE-ESSG-GGCSCTTTTCBSTTSCSEEEC
T ss_pred ecCCceEccchh---hcCCEEEEcCCCchhHHHHHHHHHcCCCCCCCCCceee-cCcc-ccCccccCCCCCccccccccc
Confidence 99999999 665 57999999999999999999999999999999999997 9987 7888721211111 123
Q ss_pred CC---CcccccC---CCcccccCcCCCcCCceecccccCCCccccccccccccccccccccceeeccccCCCceeEEEEE
Q 010408 343 PG---RTYRFYK---GPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHV 416 (511)
Q Consensus 343 ~~---~~Yr~~~---~~~lypFG~GLSYTtF~ys~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 416 (511)
.+ .+||||+ .+|+||||||||||||+|++++++. . +. .++|+|
T Consensus 573 ~eg~~vgYry~d~~~~~plypFG~GLSYTtF~ys~~~~~~-------------------------~-----~~-~~~v~v 621 (721)
T 2x41_A 573 EEDIYVGYRYYDTFGVEPAYEFGYGLSYTTFEYSDLNVSF-------------------------D-----GE-TLRVQY 621 (721)
T ss_dssp TTTTCCTHHHHHHHTCCEEECTTCCBCSSCEEEEEEEEEE-------------------------C-----SS-EEEEEE
T ss_pred cCCcccccceeecCCCceeeccCCCCCcceeEeeceEeec-------------------------C-----CC-eEEEEE
Confidence 32 3799997 4799999999999999999988531 1 11 699999
Q ss_pred EEEeCCCCCcceEEEEEeeCCCCC-CCccccccccccc-ccCCCCeEEEEEEecCCCCeeEEeCCCCEEecCeEEEEEEe
Q 010408 417 DIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFKKV-HVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIG 494 (511)
Q Consensus 417 ~V~NtG~~~G~evvQlY~~~~~~~-~~P~k~L~gF~kv-~L~pGe~~~v~~~l~~~~~ls~~d~~~~~~~~~G~y~i~vG 494 (511)
+|||||+++|+||||||+++|.++ .+|+||||||+|| .|+|||+++|+|+|++ ++|++|| .+.|++|+|+|+|+||
T Consensus 622 ~VtNtG~~~G~eVvQlYv~~~~~~~~~P~k~L~gF~kv~~L~pGes~~V~~~l~~-~~l~~~d-~~~~~~e~G~y~v~vG 699 (721)
T 2x41_A 622 RIENTGGRAGKEVSQVYIKAPKGKIDKPFQELKAFHKTRLLNPGESEEVVLEIPV-RDLASFN-GEEWVVEAGEYEVRVG 699 (721)
T ss_dssp EEEECSSSCBCCEEEEEEECCCSSSCCCSCEEEEEEECCCBCTTCEEEEEEEEEG-GGGCEEC-SSCEEECCEEEEEEEE
T ss_pred EEEECCCCCCcEEeeEEEccCCCCCCCchHHhhcccccccCCCCCeEEEEEEECH-HHhcEEc-CCeEEEeCceEEEEEE
Confidence 999999999999999999999887 8999999999999 9999999999999998 9999999 9999999999999999
Q ss_pred CCCceEEEEEE
Q 010408 495 DLKHSISLQAN 505 (511)
Q Consensus 495 ~ss~~~~~~~~ 505 (511)
+||++++++..
T Consensus 700 ~ss~d~~~~~~ 710 (721)
T 2x41_A 700 ASSRNIKLKGT 710 (721)
T ss_dssp EETTEEEEEEE
T ss_pred CCCCCcceEEE
Confidence 99999876543
No 4
>3rrx_A EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,(alpha/beta)6 sheet, hydrolase; 1.90A {Pseudoalteromonas SP} PDB: 3usz_A 3f93_A 3f94_A 3ut0_A
Probab=100.00 E-value=1.1e-79 Score=685.75 Aligned_cols=339 Identities=25% Similarity=0.364 Sum_probs=259.2
Q ss_pred ceee-ecccccccCCCCCcccccccCCCHHHHHHHHHHHHHHHhcCC----CCCCcEEEeecccccCCccCCCCCCcccc
Q 010408 8 GLTY-WSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNT----GSRLKVAACCKHYTAYDLDNWNGVDRYHF 82 (511)
Q Consensus 8 Gi~~-~aP~vdi~r~Pr~gR~~EsfgEDP~l~~~~a~a~v~G~Q~~~----~~~~~V~a~~KHF~g~g~~~~~~~~r~~~ 82 (511)
|||+ |||++||.|||||||++|||||||+|+++|+.|+|+|||+++ .+..||+||+|||||||+++ .+|+..
T Consensus 154 Gin~~~aPvvDv~rdPr~GR~~EsfGEDP~lv~~~a~A~V~GlQ~~~~~~~~~~~gV~a~~KHFpG~G~~~---~~r~~~ 230 (822)
T 3rrx_A 154 GIEWSFAPTVAVVRDDRWGRTYESYSEDPDLVKRYAGEMVTGIQGDVGADFLKGSNRIATAKHFVGDGGTE---RGVDRG 230 (822)
T ss_dssp TCCEEEEEECCCCSCTTSTTGGGSSCSCHHHHHHHHHHHHHHHHCCSSTTTTCTTCCEEEEEEESCGGGBG---GGCTTC
T ss_pred CCcEeeccccccccCCCcCccccCCCCCHHHHHHHHHHHHHHHhcccccccccCCCeEEEeeeccCCCccc---cCccCc
Confidence 9999 999999999999999999999999999999999999999852 22348999999999999765 345556
Q ss_pred ccccCHhHHHhhcCHHHHHHHHhCCcceeEeeccCCCCccCccChHHHHHhhhhhcCCCcEEECCCCcccccccCC----
Q 010408 83 NARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQ---- 158 (511)
Q Consensus 83 ~~~~s~~~L~e~~L~PF~~ai~~g~~~sVM~syn~vng~pa~~s~~ll~~lLR~e~gF~G~VvSD~~~~~~~~~~~---- 158 (511)
++.+++++|+|+||+||++||++| +.+||||||.+||+|+|.|++||++|||+||||+|+|||||++|+.+....
T Consensus 231 ~~~vs~~~L~e~~L~PF~~aI~ag-~~sVM~syn~vng~pa~~s~~lLtdlLR~e~GF~G~VvSD~~~~~~i~~~~~ea~ 309 (822)
T 3rrx_A 231 NTLIDEKGLRDIHSAGYFSAINQG-VQSVMASFNSWNGKRVHGDKHLLTDVLKNQLGFDGFVVSDWNAHKFVEGCDLEQC 309 (822)
T ss_dssp EECCCHHHHHHTTSHHHHHHHHTT-CSEEEECSSEETTEEGGGCHHHHTCCCCCCSCCCSEEECCTTGGGGSTTCBTTBC
T ss_pred cCcCCHHHHHHHhhHHHHHHHHcC-CCEEEeccccCCCccccCCHHHHHHHHHHhcCCCeEEecccchhhhhcCChHHHH
Confidence 789999999999999999999987 999999999999999999999999999999999999999999986543210
Q ss_pred --------C---CCCC---HHHHHHHchhcc-------------------------ccCCc-------------------
Q 010408 159 --------H---YTRT---PEEAAADAIKAG-------------------------VACGY------------------- 180 (511)
Q Consensus 159 --------~---~~~~---~~~a~~~ai~AG-------------------------~~~~~------------------- 180 (511)
. ...+ ..+.+..|++.| .|...
T Consensus 310 ~~Al~AG~Dm~m~~~~~~~~~~~l~~aV~~G~i~e~rID~av~RIL~~K~~lGLfd~p~~~~~~~~~~~~~v~~~eh~~l 389 (822)
T 3rrx_A 310 AQAINAGVDVIMVPEHFEAFYHNTVKQVKAGVIAESRINDAVRRFLRAKIRWGVFTKSKPSARPESQHPQWLGAAEHRTL 389 (822)
T ss_dssp HHHHHHTCCBEECTTTHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTTTSCCGGGSGGGSCGGGTTCHHHHHH
T ss_pred HHHHHcCCCEECCCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCCCCcccccccccccccCCHHHHHH
Confidence 0 0011 112344555555 11000
Q ss_pred -----------------cchhhhhhhheee-ecc------CC-ccc-cc--------cCC----cchHHHHHH-------
Q 010408 181 -----------------TTPLQGISRYAKT-IHQ------AG-CFG-VA--------CNG----NQLIGAAEV------- 215 (511)
Q Consensus 181 -----------------~~~l~~~~~~~~~-~~~------~G-~~~-~~--------~~~----~~~~~~a~~------- 215 (511)
+.||...++.+-+ ..+ .| ++. ++ ... ...+.+++.
T Consensus 390 Are~A~eSiVLLKN~~~~LPL~~~~~IaViGp~A~~~~~~~Ggws~~~~G~gs~~~~~~~~~t~l~gi~~~~~~~~~~v~ 469 (822)
T 3rrx_A 390 AREAVRKSLVLLKNNESILPIKASSRILVAGKGANAINMQAGGWSVSWQGTDNTNSDFPNATSIFSGLQSQVTKAGGKIT 469 (822)
T ss_dssp HHHHHHHHCEEEEEGGGCCSBCTTSEEEEESTTTTCHHHHHCSSSSSSSCTTCCGGGSTTCBCHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHhceEEEecCCCccCCCCCCeEEEEcCCccchhhccCCcceeccccCCCcCCCCCCCCHHHHHHHHHHhcCCeEE
Confidence 1111100000000 000 00 000 00 000 112222221
Q ss_pred ------HHhhCCEEEEEeccCCCCccccCCCCCCCCC---hhHHHHHHHHHHhCCCCEEEEEeCCceEEccCccCCCCcc
Q 010408 216 ------AARQADATVLVMGLDQSIEAEFIDRAGLLLP---GRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIG 286 (511)
Q Consensus 216 ------~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp---~~q~~Li~~va~~~~kpvVvVl~~g~P~~l~~~~~~~~v~ 286 (511)
.++++|++|+++|++++.|++| ||.+|.|| +.|.+||++|++ .+||||||+++|+|+.|.++. ++++
T Consensus 470 ~~~~~~~a~~aDv~Iv~~Ge~~~~e~~g-Dr~~L~lp~g~~~q~~Li~av~a-~g~pvVvVl~sGrP~~l~~~~--~~~~ 545 (822)
T 3rrx_A 470 LSESGEYTSKPDVAIVVIGEEPYAEWFG-DIELLEFQHETKHALALLKQLKA-DNIPVVTVFLSGRPLWVNKEL--NASD 545 (822)
T ss_dssp ECTTCCCSSCCSEEEEEEECCCCCGGGG-CCSCCBTTTTTCHHHHHHHHHHH-TTCCEEEEEECSSCCBCHHHH--HTCS
T ss_pred EcccccccccCCeEEEEecCCcccccCC-CcccccCCCCChHHHHHHHHHHH-hCCCEEEEEeCCcceeccchh--hhCC
Confidence 2467999999999998877777 99999999 679999999986 578999999999999996543 4799
Q ss_pred EEEEecCCChhHHHHHHHHHcCCC------CCCeecCceecccccCCCCCCccccccccCCCCCCcccccCCCcccccCc
Q 010408 287 AILWVGYPGQAGGAAIADVLFGRA------NPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGH 360 (511)
Q Consensus 287 Ail~a~~pG~e~g~AiAdVL~G~~------nPsGkLPvT~~p~~~~~~~p~~~~~~~~~~~~~~~~Yr~~~~~~lypFG~ 360 (511)
|||++||||++++ ||||||||++ |||||||+|| |++. +|+|+... +.+| +|||||||
T Consensus 546 Ail~aw~pG~eGg-AiAdVLfG~v~g~~~~nPSGkLP~T~-P~~~-~q~P~~~~------------~~~~--~PlypFG~ 608 (822)
T 3rrx_A 546 AFVAAWLPGSEGE-GVADVLLTNKQGKTQFDFTGKLSFSW-PKYD-DQFTLNLN------------DADY--DPLFAYGY 608 (822)
T ss_dssp EEEEEECCCSBTH-HHHHHHBBCTTSCBSCCCCCCCSSCB-CSST-TCTTCCTT------------CSSC--CCSBCTTC
T ss_pred eEEEcCCCCchhH-HHHHHHhcccccccccCCCCCCceec-cCCc-ccCCcccC------------CCCC--ccccCCCC
Confidence 9999999999987 9999999997 9999999997 9997 88995311 1122 89999999
Q ss_pred CCCcCCceecc
Q 010408 361 GMSYTTFAHTL 371 (511)
Q Consensus 361 GLSYTtF~ys~ 371 (511)
|||||||+|..
T Consensus 609 GLSYt~f~~~~ 619 (822)
T 3rrx_A 609 GLTYQDNINVP 619 (822)
T ss_dssp CBCTTCCCCCC
T ss_pred CcCCCCCcccc
Confidence 99999999865
No 5
>1x38_A Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domain fold, ligand-protein complex; HET: NAG BMA FUC MAN IDD GOL; 1.70A {Hordeum vulgare} SCOP: c.1.8.7 c.23.11.1 PDB: 1lq2_A* 1x39_A* 1ex1_A* 1ieq_A* 1iev_A* 1iew_A* 1iex_A* 1j8v_A*
Probab=100.00 E-value=2.1e-78 Score=664.81 Aligned_cols=330 Identities=25% Similarity=0.388 Sum_probs=265.1
Q ss_pred ceee-ecccccccCCCCCcccccccCCCHHHHHHHHHHHHHHHhcCCCC-----------CCcEEEeecccccCCccCCC
Q 010408 8 GLTY-WSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGS-----------RLKVAACCKHYTAYDLDNWN 75 (511)
Q Consensus 8 Gi~~-~aP~vdi~r~Pr~gR~~EsfgEDP~l~~~~a~a~v~G~Q~~~~~-----------~~~V~a~~KHF~g~g~~~~~ 75 (511)
|+|+ |||++||+|||||||++|||||||+|+++|+. +|+|||+++.. ..||+||+|||||||+++.
T Consensus 139 Gi~~~~aP~vdv~r~p~~GR~~esfgeDP~lv~~~a~-~v~GlQ~~~~~~~~~~~~~~~~~~gV~a~~KHFpg~g~~~~- 216 (602)
T 1x38_A 139 GIQYAFAPCIAVCRDPRWGRCYESYSEDRRIVQSMTE-LIPGLQGDVPKDFTSGMPFVAGKNKVAACAKHFVGDGGTVD- 216 (602)
T ss_dssp TCCEECCCBCCCCSCTTSTTGGGSSCSSHHHHHHGGG-HHHHHHCCCCTTCCTTCCCCCSTTSCBCEEEEETTGGGCGG-
T ss_pred CCCEEeeceeccccCCCcCccccCcCCCHHHHHHHHH-HHHHhcCCCccccccccccccccCCeEEEeccccCCCcccc-
Confidence 8999 99999999999999999999999999999999 99999984210 2389999999999998762
Q ss_pred CCCccccccccCHhHHHhhcCHHHHHHHHhCCcceeEeeccCCCCccCccChHHHHHhhhhhcCCCcEEECCCCcccccc
Q 010408 76 GVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLY 155 (511)
Q Consensus 76 ~~~r~~~~~~~s~~~L~e~~L~PF~~ai~~g~~~sVM~syn~vng~pa~~s~~ll~~lLR~e~gF~G~VvSD~~~~~~~~ 155 (511)
+++..++.+++++|+|+||+||++||++| +.+||||||.+||+|||.|++||++|||+||||+|+|||||++|+.+.
T Consensus 217 --~~~~~~~~~~~~~l~e~~l~pF~~ai~ag-~~~vM~sy~~v~g~pa~~s~~ll~~lLR~e~GF~G~VvSD~~~~~~~~ 293 (602)
T 1x38_A 217 --GINENNTIINREGLMNIHMPAYKNAMDKG-VSTVMISYSSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWEGIDRIT 293 (602)
T ss_dssp --GCTTCEECCCHHHHHHHTSHHHHHHHHTT-CCEEEECSSEETTEEGGGCHHHHCCCCCTTSCCCSEEECCTTTTGGGS
T ss_pred --CcccccCcCCHHHHHHHHHHHHHHHHHcC-CCEEEecccccCCccccCCHHHHHHHhhcccCCCeEEEccchHHHHHH
Confidence 34445789999999999999999999987 999999999999999999999999999999999999999999999886
Q ss_pred cCCCCCCCHHHHHHHchhcc------------------------------------------------------------
Q 010408 156 NTQHYTRTPEEAAADAIKAG------------------------------------------------------------ 175 (511)
Q Consensus 156 ~~~~~~~~~~~a~~~ai~AG------------------------------------------------------------ 175 (511)
..++ .+..+++++||+||
T Consensus 294 ~~~~--~~~~~a~~~al~AG~D~~m~~~~~~~~~~~l~~av~~G~i~~~~id~av~RiL~~k~~~glf~~p~~~~~~~~~ 371 (602)
T 1x38_A 294 TPAG--SDYSYSVKASILAGLDMIMVPNKYQQFISILTGHVNGGVIPMSRIDDAVTRILRVKFTMGLFENPYADPAMAEQ 371 (602)
T ss_dssp SSTT--TTHHHHHHHHHHHTCCBEECCSCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHTTTTTCCSCCGGGGGG
T ss_pred hhcC--CCHHHHHHHHHHcCCCcccCCcchhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCcchhhc
Confidence 5443 45778888888888
Q ss_pred ---------------------ccCC--c---cchhhhh-hhheeee-c-------cCCcccc-------ccCCcc---hH
Q 010408 176 ---------------------VACG--Y---TTPLQGI-SRYAKTI-H-------QAGCFGV-------ACNGNQ---LI 210 (511)
Q Consensus 176 ---------------------~~~~--~---~~~l~~~-~~~~~~~-~-------~~G~~~~-------~~~~~~---~~ 210 (511)
++.. . +.||..- ++.+-+- . ..|++.. ...... .+
T Consensus 372 ~~~~~~~~la~~~a~~sivLLKN~~~~~~~~~LPL~~~~~~iaviG~~A~~~~~~~gg~~~~~~g~~~~~~~~~t~~~~l 451 (602)
T 1x38_A 372 LGKQEHRDLAREAARKSLVLLKNGKTSTDAPLLPLPKKAPKILVAGSHADNLGYQCGGWTIEWQGDTGRTTVGTTILEAV 451 (602)
T ss_dssp TTCHHHHHHHHHHHHHHCEEEEECSSTTSCCCCSCCSCCSEEEEESTTTTCHHHHHCSSSSSTTCCSSCCSSCBCHHHHH
T ss_pred cCCHHHHHHHHHHHHhceEEeccCCCCCcccccccCCCCCEEEEEcCCCccccccCCcceeeccCCCCCCCCcccHHHHH
Confidence 1111 1 3333211 1000000 0 0000000 000000 00
Q ss_pred ----------------HHHHHHHhhCCEEEEEeccCCCCccccCCCCCCCCChhHHHHHHHHHHhCCCCEEEEEeCCceE
Q 010408 211 ----------------GAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPV 274 (511)
Q Consensus 211 ----------------~~a~~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~va~~~~kpvVvVl~~g~P~ 274 (511)
..+...++++|++||++|+++..++|| ||.+|.||..|.+||++|++ ++|+|||+++|+|+
T Consensus 452 ~~~~~~~~~v~~~~~~~~~~~~a~~aD~viv~~g~~~~~e~~g-dr~~l~lp~~q~~li~~v~~--~~~~VvVl~~g~P~ 528 (602)
T 1x38_A 452 KAAVDPSTVVVFAENPDAEFVKSGGFSYAIVAVGEHPYTETKG-DNLNLTIPEPGLSTVQAVCG--GVRCATVLISGRPV 528 (602)
T ss_dssp HHHSCTTCEEEEESSCCHHHHHHTTCSCEEEEEECCCCCGGGG-CCSSCCCCSSSHHHHHHHHT--TSCEEEEEECSSCC
T ss_pred HHHhCCCeEEEEcCCCCHHHHHHhhCCEEEEEeccCcccccCC-CcCCcCCChhHHHHHHHHHh--CCCEEEEEeCCCce
Confidence 011223789999999999988889998 99999999999999999986 67999999999999
Q ss_pred EccCccCCCCccEEEEecCCChhHHHHHHHHHcCCCCCCeecCceecccccCCCCCCccccccccCCCCCCcccccCCCc
Q 010408 275 DVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPV 354 (511)
Q Consensus 275 ~l~~~~~~~~v~Ail~a~~pG~e~g~AiAdVL~G~~nPsGkLPvT~~p~~~~~~~p~~~~~~~~~~~~~~~~Yr~~~~~~ 354 (511)
+|.++ .++++|||++|+||+++ +|+||||||++|||||||+|| |++. +++|.+ .+||||+ |
T Consensus 529 ~l~~~--~~~~~Ail~a~~pG~~g-~AiadvL~G~~nPsGkLP~t~-p~~~-~~~p~~------------~g~~~~~--p 589 (602)
T 1x38_A 529 VVQPL--LAASDALVAAWLPGSEG-QGVTDALFGDFGFTGRLPRTW-FKSV-DQLPMN------------VGDAHYD--P 589 (602)
T ss_dssp CCHHH--HHHCSEEEEEECCCSBT-HHHHHHHTTSSCCCCCCSSCB-CSCG-GGCSCC------------TTCSSCC--C
T ss_pred eccch--hhccCeEEeccCCchHH-HHHHHHHcCCCCCCccCcccc-cCcc-ccCCcc------------CCCCCCC--c
Confidence 99643 26899999999999997 999999999999999999997 8886 788843 1378885 9
Q ss_pred ccccCcCCCcCC
Q 010408 355 VFPFGHGMSYTT 366 (511)
Q Consensus 355 lypFG~GLSYTt 366 (511)
+||||||||||+
T Consensus 590 lypFG~GLSYt~ 601 (602)
T 1x38_A 590 LFRLGYGLTTNA 601 (602)
T ss_dssp SBCTTCCBCCCC
T ss_pred cCcCCCCcCCCC
Confidence 999999999996
No 6
>3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM barrel, glycos hydrolase, membrane, palmitate; HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A* 3nvd_A* 3lk6_A*
Probab=100.00 E-value=1.2e-69 Score=598.83 Aligned_cols=315 Identities=20% Similarity=0.267 Sum_probs=238.6
Q ss_pred ceee-ecccccccCCCCCcc-cccccCCCHHHHHHHHHHHHHHHhcCCCCCCcEEEeecccccCCccCCCCCCccccccc
Q 010408 8 GLTY-WSPNVNIFRDPRWGR-GQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNAR 85 (511)
Q Consensus 8 Gi~~-~aP~vdi~r~Pr~gR-~~EsfgEDP~l~~~~a~a~v~G~Q~~~~~~~~V~a~~KHF~g~g~~~~~~~~r~~~~~~ 85 (511)
|+|+ |||++||+||||||| ++|||||||+|+++|+.|+|+|||++ ||+||+|||||||.+..+.| .....+.
T Consensus 168 Gi~~~~aPvvDv~r~p~~grig~rsfgeDP~lv~~~a~a~v~Glq~~-----gV~a~~KHFpg~g~~~~dsh-~~~~~~~ 241 (642)
T 3bmx_A 168 GINTDFSPVVDINNNPDNPVIGVRSFSSNRELTSRLGLYTMKGLQRQ-----DIASALKHFPGHGDTDVDSH-YGLPLVS 241 (642)
T ss_dssp TCCEECCCBCCCCCCTTCSSSGGGSSCSSHHHHHHHHHHHHHHHHHT-----TCEEEEEEETCCTTCSSCTT-TSCCBCC
T ss_pred CCCEEECCccccCCCCCCCcccccccCCCHHHHHHHHHHHHHHHHhC-----CceEEeccccCCCCccCCCC-CCCceec
Confidence 8999 999999999999998 89999999999999999999999998 89999999999998763322 2223467
Q ss_pred cCHhHHHhhcCHHHHHHHHhCCcceeEee---ccCCC-------------CccCccChHHHHHhhhhhcCCCcEEECCCC
Q 010408 86 VSKQDLEDTYNVPFKACVVEGKVASVMCS---YNQVN-------------GKPTCADPDILKNTIHGQWRLDGYIVSDCD 149 (511)
Q Consensus 86 ~s~~~L~e~~L~PF~~ai~~g~~~sVM~s---yn~vn-------------g~pa~~s~~ll~~lLR~e~gF~G~VvSD~~ 149 (511)
+++++|+|+||+||+++|++| +++|||| ||++| |+|||.|++||++|||+||||+|+|||||.
T Consensus 242 ~~~~~l~e~~l~PF~~ai~ag-~~~VM~ah~~y~~id~~~~~~~~~g~~~g~pa~~s~~ll~~lLR~e~GF~G~VvSD~~ 320 (642)
T 3bmx_A 242 HGQERLREVELYPFQKAIDAG-ADMVMTAHVQFPAFDDTTYKSKLDGSDILVPATLSKKVMTGLLRQEMGFNGVIVTDAL 320 (642)
T ss_dssp CCHHHHHHTTHHHHHHHHHTT-CCEEEECCCBCTTTCCCEEECTTTSCEEECBGGGCHHHHCCCCCCCSCCCSEEECSCT
T ss_pred cCHHHHhhhhHHHHHHHHHcC-CCEEEEccccccccCccccccccccccCcccccCCHHHHHHHhhCcCCCCEEEEeCch
Confidence 899999999999999999987 8999999 77888 799999999999999999999999999998
Q ss_pred cccccccCCCCCCCHHHHHHHchhccc-----c-----------------------------------------------
Q 010408 150 SVGVLYNTQHYTRTPEEAAADAIKAGV-----A----------------------------------------------- 177 (511)
Q Consensus 150 ~~~~~~~~~~~~~~~~~a~~~ai~AG~-----~----------------------------------------------- 177 (511)
+|..+... + +..+++++||+||. +
T Consensus 321 ~m~ai~~~--~--~~~~a~~~Al~AG~D~~l~~~~~~~~~~~~~~~~~~~~l~~av~~G~i~~~~id~av~RiL~~k~~~ 396 (642)
T 3bmx_A 321 NMKAIADH--F--GQEEAVVMAVKAGVDIALMPASVTSLKEEQKFARVIQALKEAVKNGDIPEQQINNSVERIISLKIKR 396 (642)
T ss_dssp TSHHHHTT--S--CHHHHHHHHHHHTCSBEESCSCCCSGGGTHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHhc--C--CHHHHHHHHHHcCCCEecccccccccccchhHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHc
Confidence 88776431 1 23444445554441 0
Q ss_pred ------CCccc------hhhhhh---------hhe--e-ee---------cc--C-------Ccc---------------
Q 010408 178 ------CGYTT------PLQGIS---------RYA--K-TI---------HQ--A-------GCF--------------- 200 (511)
Q Consensus 178 ------~~~~~------~l~~~~---------~~~--~-~~---------~~--~-------G~~--------------- 200 (511)
++... ....+. +.+ . +. .. . |..
T Consensus 397 gl~~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~a~~sivLLKN~~~~LPL~~~~~~~iaviG~~~~~~~~~~~~l~~~~ 476 (642)
T 3bmx_A 397 GMYPARNSDSTKEKIAKAKKIVGSKQHLKAEKKLAEKAVTVLKNEQHTLPFKPKKGSRILIVAPYEEQTASIEQTIHDLI 476 (642)
T ss_dssp TCSSCCCCCCHHHHHHHHHHHTTCHHHHHHHHHHHHHHCEEEEEGGGCCSCCCCTTCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCcCCCCcccccchhhhhhhcCCHHHHHHHHHHHHhCEEEEccCCCcCCCCCCCCCEEEEEeCCccchhhHHHHHHHhh
Confidence 00000 000000 000 0 00 00 0 000
Q ss_pred ---ccc--------cCCcchHHHHHHHHhhCCEEEEEeccCCCCccccCCCCCCCCChhH------------HHHHHHHH
Q 010408 201 ---GVA--------CNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ------------QELVSRVA 257 (511)
Q Consensus 201 ---~~~--------~~~~~~~~~a~~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q------------~~Li~~va 257 (511)
... ......+++++++++++|+||++++.......| ++.+|+.| .+||++++
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~aDvvIv~~~~~~~~~~e-----~~~l~~~q~~~~~~~~~~~~~~li~~~~ 551 (642)
T 3bmx_A 477 KRKKIKPVSLSKMNFASQVFKTEHEKQVKEADYIITGSYVVKNDPVV-----NDGVIDDTISDSSKWATVFPRAVMKAAL 551 (642)
T ss_dssp HTTSSCCCEEEEEECTTCCCCHHHHHHHHHCSEEEEEECCSSCCCCE-----ETTEECCCCCSSTTHHHHHHHHHHHHHH
T ss_pred CCCCeeEEeccCCCCcchhhHHHHHHHHhhCCEEEEEecCCCCCchh-----ccCCccccccccccccchhHHHHHHHHH
Confidence 000 001134567889999999999966543211122 34577777 99999998
Q ss_pred HhCCCCEEEEEeCCceEEccCccCCCCccEEEEecCC--------ChhHHHHHHHHHcCCCCCCeecCceecccccCCCC
Q 010408 258 KASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYP--------GQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRL 329 (511)
Q Consensus 258 ~~~~kpvVvVl~~g~P~~l~~~~~~~~v~Ail~a~~p--------G~e~g~AiAdVL~G~~nPsGkLPvT~~p~~~~~~~ 329 (511)
+ ++||+|||+ .|+|++|+|+ ++++|||++|+| |+++|+|+||||||++|||||||+|| |++. .
T Consensus 552 ~-~~~pvVvv~-~g~P~~l~~~---~~~~Ail~a~~~~G~~~g~~g~~~g~AiadvLfG~~nPsGkLPvt~-p~~~---~ 622 (642)
T 3bmx_A 552 Q-HNKPFVLMS-LRNPYDAANF---EEAKALIAVYGFKGYANGRYLQPNIPAGVMAIFGQAKPKGTLPVDI-PSVT---K 622 (642)
T ss_dssp H-TTCCEEEEE-CSCGGGGGGC---TTCSEEEECSCCCCEETTEESCSHHHHHHHHHTTSSCCCCCCSSCE-ECSS---S
T ss_pred H-cCCCEEEEe-cCChhccccc---cccCeEEEEccCcccccccccchHHHHHHHHHcCCCCCCccCceee-eccC---C
Confidence 6 678987765 5999999987 469999999999 89999999999999999999999997 7653 1
Q ss_pred CCccccccccCCCCCCcccccCCCcccccCcCCCcCCce
Q 010408 330 PMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMSYTTFA 368 (511)
Q Consensus 330 p~~~~~~~~~~~~~~~~Yr~~~~~~lypFG~GLSYTtF~ 368 (511)
| .+|+||||||||||+|.
T Consensus 623 ~---------------------~~plfpfG~GLsYt~~~ 640 (642)
T 3bmx_A 623 P---------------------GNTLYPLGYGLNIKTGR 640 (642)
T ss_dssp T---------------------TSEEECTTCCBCTTTCS
T ss_pred C---------------------CCcccCCCCCccCCCCC
Confidence 1 26999999999999984
No 7
>3sql_A Glycosyl hydrolase family 3; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM-barrel, alpha-beta-alpha sandwich; HET: MSE; 2.25A {Synechococcus SP} PDB: 3sqm_A*
Probab=100.00 E-value=4.6e-44 Score=382.86 Aligned_cols=158 Identities=22% Similarity=0.330 Sum_probs=141.7
Q ss_pred ceee-ecccccccCCCCCc-ccccccCCCHHHHHHHHHHHHHHHhcCCCCCCcEEEeecccccCCccCCCCCCccccccc
Q 010408 8 GLTY-WSPNVNIFRDPRWG-RGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNAR 85 (511)
Q Consensus 8 Gi~~-~aP~vdi~r~Pr~g-R~~EsfgEDP~l~~~~a~a~v~G~Q~~~~~~~~V~a~~KHF~g~g~~~~~~~~r~~~~~~ 85 (511)
|+|+ |||++||+|||||| |++|||||||+|+++|+.|+|+|+|+. ||+||+|||||||.++.+.| .....++
T Consensus 142 Gin~~fAPvvDv~r~P~~g~ig~rsfGEDP~lv~~~a~A~v~GlQ~~-----gV~a~~KHFpG~G~~~~Dsh-~~~~~v~ 215 (535)
T 3sql_A 142 GINWVLAPVLDVNNNPHNPVINIRAFGETPDQVSALGTAFIRGAQQY-----AVLTTAKHFPGHGDTATDSH-LALPTIS 215 (535)
T ss_dssp TCCEECCCBCCCCCCTTCSSSGGGSSCSSHHHHHHHHHHHHHHHTTS-----SCBCEEEEETCCCSCSCCTT-TSCCBCC
T ss_pred CCCEEecCeeccCCCCCCCCccccCCCCCHHHHHHHHHHHHHHHhhc-----ccceeeeeecccCCcccCCc-cCCCcCC
Confidence 9999 99999999999999 589999999999999999999999998 89999999999998863322 2222457
Q ss_pred cCHhHHHhhcCHHHHHHHHhCCcceeEeeccCCCC----ccCccChHHHHHhhhhhcCCCcEEECCCCcccccccCCCCC
Q 010408 86 VSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNG----KPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYT 161 (511)
Q Consensus 86 ~s~~~L~e~~L~PF~~ai~~g~~~sVM~syn~vng----~pa~~s~~ll~~lLR~e~gF~G~VvSD~~~~~~~~~~~~~~ 161 (511)
+++++|+|+||+||+++|++| +++||||||.+|+ +|||.|+++|+++||+||||+|+|||||.+|+.+... +
T Consensus 216 ~s~~~L~e~~L~PF~~aI~ag-~~sVM~ah~~v~~lD~~~PAs~S~~lLtdlLR~e~GF~G~VvSD~l~m~ai~~~--~- 291 (535)
T 3sql_A 216 HDDTRLNTVELPPFKAAIQGG-VDAVMNAHLMIPAWDQQYPATLSPAILTGQLRHKLGFKGLIVTDALVMGGITQF--A- 291 (535)
T ss_dssp CCHHHHHHTTSHHHHHHHHTT-CSEEEECCCBBTTTBSSSCGGGCHHHHCCCCCCCSCCCSEEECSCTTSHHHHTT--S-
T ss_pred CCHHHHHHHHHHHHHHHHHcC-CCEEEecCccCCCcCCCcCcccCHHHHHHHHHHhcCCCceEEcChhHHHHHHhc--C-
Confidence 899999999999999999987 9999999998874 8999999999999999999999999999999988642 2
Q ss_pred CCHHHHHHHchhccc
Q 010408 162 RTPEEAAADAIKAGV 176 (511)
Q Consensus 162 ~~~~~a~~~ai~AG~ 176 (511)
+..+++++||+||.
T Consensus 292 -~~~eaa~~Al~AG~ 305 (535)
T 3sql_A 292 -APDTVVVQAIAAGA 305 (535)
T ss_dssp -CHHHHHHHHHHHTC
T ss_pred -CHHHHHHHHHHCCC
Confidence 57899999999993
No 8
>3tev_A Glycosyl hyrolase, family 3; PSI-biology, midwest center for structural genomics, structu genomic, MCSG, hydrolase; 2.30A {Deinococcus radiodurans}
Probab=100.00 E-value=5.1e-44 Score=366.30 Aligned_cols=157 Identities=22% Similarity=0.390 Sum_probs=140.5
Q ss_pred ceee-ecccccccCCCCCcccc-cccCCCHHHHHHHHHHHHHHHhcCCCCCCcEEEeecccccCCccCCCCCCccccccc
Q 010408 8 GLTY-WSPNVNIFRDPRWGRGQ-ETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNAR 85 (511)
Q Consensus 8 Gi~~-~aP~vdi~r~Pr~gR~~-EsfgEDP~l~~~~a~a~v~G~Q~~~~~~~~V~a~~KHF~g~g~~~~~~~~r~~~~~~ 85 (511)
|||+ |||++||+|||+|||+. |||||||+|+++|+.|+|+|+|+. ||++|+|||||||++..+. ++....++
T Consensus 125 Gi~~~~aPv~Dv~r~p~~~rig~RsfgeDP~lv~~~a~a~v~Glq~~-----gV~a~~KHFpG~g~~~~ds-h~~~~~~~ 198 (351)
T 3tev_A 125 GINWNFTPVLDINVNPANPVIGDRAYGSDAARVTRHGRAALAGHTRE-----GVAPCAKHFPGHGDTHQDS-HLALPRVS 198 (351)
T ss_dssp TCCEECCCBCCCCCCTTCCSSGGGSSCSSHHHHHHHHHHHHHHHHTT-----TCEECEEEETCCTTCBCSS-TTSCCEEC
T ss_pred CCCEeccceeEeccCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHc-----CCeEEeeeccCCCCCcCCC-CcCCCcCC
Confidence 9999 99999999999999965 699999999999999999999998 8999999999999876332 22223578
Q ss_pred cCHhHHHhhcCHHHHHHHHhCCcceeEee---ccCCCC-ccCccChHHHHHhhhhhcCCCcEEECCCCcccccccCCCCC
Q 010408 86 VSKQDLEDTYNVPFKACVVEGKVASVMCS---YNQVNG-KPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYT 161 (511)
Q Consensus 86 ~s~~~L~e~~L~PF~~ai~~g~~~sVM~s---yn~vng-~pa~~s~~ll~~lLR~e~gF~G~VvSD~~~~~~~~~~~~~~ 161 (511)
+++++|+|+||+||+++ ++| +.+|||| ||++|| .|||.|++||++|||+||||+|+|||||.+|..+...+
T Consensus 199 ~s~~~L~e~~l~PF~~a-~ag-~~~VM~aHi~y~~id~~~Pa~~s~~ll~~lLR~elGF~G~VvSD~~~m~~i~~~~--- 273 (351)
T 3tev_A 199 KSRAELDAGELAPFRAL-LPE-TPAIMTAHIVYDALDAEHPATLSPRILTGLLREEWGYDGVIVTDSMGMQAIDANY--- 273 (351)
T ss_dssp CCHHHHHHTTTHHHHHH-GGG-CSEEEECSCEETTTBSSSCGGGCHHHHCCCCCCCSCCCSEEEECCTTSHHHHHHS---
T ss_pred CCHHHHHHhhhHHHHHH-hcC-CCEEEecceEecCCCCCcCccCCHHHHHHHHHhhcCCCeEEEeccchHHHHHhcC---
Confidence 89999999999999999 666 9999999 899999 69999999999999999999999999999998876432
Q ss_pred CCHHHHHHHchhccc
Q 010408 162 RTPEEAAADAIKAGV 176 (511)
Q Consensus 162 ~~~~~a~~~ai~AG~ 176 (511)
...+++.+||+||.
T Consensus 274 -~~~~~~~~Al~AG~ 287 (351)
T 3tev_A 274 -GRGEAAVRALRAGA 287 (351)
T ss_dssp -CHHHHHHHHHHHTC
T ss_pred -CHHHHHHHHHHcCC
Confidence 26789999999993
No 9
>4gvf_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: NDG NAG MES; 1.35A {Salmonella enterica subsp} PDB: 4gvg_A* 4gvh_A* 4gvi_A*
Probab=100.00 E-value=4.8e-42 Score=350.81 Aligned_cols=156 Identities=18% Similarity=0.287 Sum_probs=138.7
Q ss_pred ceee-ecccccccC-CCCCcccccccCCCHHHHHHHHHHHHHHHhcCCCCCCcEEEeecccccCCccCCCCCCccccccc
Q 010408 8 GLTY-WSPNVNIFR-DPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNAR 85 (511)
Q Consensus 8 Gi~~-~aP~vdi~r-~Pr~gR~~EsfgEDP~l~~~~a~a~v~G~Q~~~~~~~~V~a~~KHF~g~g~~~~~~~~r~~~~~~ 85 (511)
|||+ |||++||+| +|.|| +|||||||+|+++|+.|+|+|||+. ||++|+|||||||++..+.+.. ....+
T Consensus 112 Gin~~faPv~Dv~r~~~~ig--~rsfgeDP~lv~~~a~a~v~Glq~~-----GV~a~~KHFpG~G~~~~dsh~~-~~v~~ 183 (349)
T 4gvf_A 112 DIDISFAPVLDVGHISAAIG--ERSYHADPAKALAMATRFIDGMHDA-----GMKTTGKHFPGHGAVTADSHKE-TPCDP 183 (349)
T ss_dssp TCCEECCCBCCCCSCCTTTG--GGSSCSSHHHHHHHHHHHHHHHHHH-----TCCCEEEEETCCTTCCCCSSSS-CCBCC
T ss_pred CCCEEecCcccCCCCCCCCc--CcCCCCCHHHHHHHHHHHHHHHHHc-----CceeeecccccCCCcccCCCCC-CCCCC
Confidence 9999 999999998 57665 8999999999999999999999998 8999999999999987433221 12235
Q ss_pred cCHhHHHhhcCHHHHHHHHhCCcceeEee---ccCCCCccCccChHHHHHhhhhhcCCCcEEECCCCcccccccCCCCCC
Q 010408 86 VSKQDLEDTYNVPFKACVVEGKVASVMCS---YNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTR 162 (511)
Q Consensus 86 ~s~~~L~e~~L~PF~~ai~~g~~~sVM~s---yn~vng~pa~~s~~ll~~lLR~e~gF~G~VvSD~~~~~~~~~~~~~~~ 162 (511)
.+.++|+|.||+||+++|++|++.+|||| ||++||+|||.|+++|++|||+||||+|+|||||.+|..+. ...
T Consensus 184 ~s~~el~~~~l~PF~~aI~~g~~~~VM~aHv~y~~id~~Pa~~S~~ll~~lLR~elGF~G~VvSD~l~m~~~~----~~~ 259 (349)
T 4gvf_A 184 RPETDIRGKDMSVFRTLISENKLDAIMPAHVIYRAIDPRPASGSPYWLKTVLRQELGFDGVIFSDDLSMEGAA----IMG 259 (349)
T ss_dssp CCHHHHHHTHHHHHHHHHHTTCCSEEEECSCBCTTTCSSCGGGCHHHHCCCCCCCTCCCSEEEEEEGGGCCCG----GGC
T ss_pred cCHHHHHHHHhHHHHHHHHcCCCCeEeecccccCCCCCCCCcCCHHHHHHHHHHhcCCCEEEEecCCcccccc----ccC
Confidence 68899999999999999999889999999 99999999999999999999999999999999999997652 345
Q ss_pred CHHHHHHHchhcc
Q 010408 163 TPEEAAADAIKAG 175 (511)
Q Consensus 163 ~~~~a~~~ai~AG 175 (511)
+..+++.+||+||
T Consensus 260 ~~~eaa~~Al~AG 272 (349)
T 4gvf_A 260 SYAERAQASLDAG 272 (349)
T ss_dssp CHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHcC
Confidence 6889999999999
No 10
>2oxn_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: OAN; 1.70A {Vibrio cholerae} PDB: 3gs6_A* 3gsm_A* 1y65_A* 1tr9_A
Probab=100.00 E-value=5.5e-42 Score=349.85 Aligned_cols=153 Identities=18% Similarity=0.247 Sum_probs=137.0
Q ss_pred ceee-ecccccccCCCCCcccccccCCCHHHHHHHHHHHHHHHhcCCCCCCcEEEeecccccCCccCCCCCCcccccccc
Q 010408 8 GLTY-WSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNARV 86 (511)
Q Consensus 8 Gi~~-~aP~vdi~r~Pr~gR~~EsfgEDP~l~~~~a~a~v~G~Q~~~~~~~~V~a~~KHF~g~g~~~~~~~~r~~~~~~~ 86 (511)
|||+ |||++||.|+ +|.|+.|||||||+|+++|+.|+|+|||+. ||++|+|||||||+++.+ ++. +..+
T Consensus 109 Gi~~~~aPv~Dv~~~-~~~ig~rsfgeDP~lv~~~a~a~v~Glq~~-----gV~a~~KHFpG~G~~~~d---sh~-~~~v 178 (340)
T 2oxn_A 109 DVDLSFAPVLDMGFA-CKAIGNRAFGEDVQTVLKHSSAFLRGMKAV-----GMATTGKHFPGHGAVIAD---SHL-ETPY 178 (340)
T ss_dssp TCCEECCCBCCCCSC-STTTGGGSSCSSHHHHHHHHHHHHHHHHHT-----TCCCEEEEETCCTTCCSC---CSS-SSCB
T ss_pred CCCEEecCccCCCCC-CCcCcCCCCCCCHHHHHHHHHHHHHHHHHC-----CceeeeccCcCCCCccCC---CCC-CCcc
Confidence 9999 9999999999 888999999999999999999999999998 899999999999998633 332 2223
Q ss_pred C-HhHHHhhcCHHHHHHHHhCCcceeEee---ccCCCCccCccChHHHHHhhhhhcCCCcEEECCCCcccccccCCCCCC
Q 010408 87 S-KQDLEDTYNVPFKACVVEGKVASVMCS---YNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTR 162 (511)
Q Consensus 87 s-~~~L~e~~L~PF~~ai~~g~~~sVM~s---yn~vng~pa~~s~~ll~~lLR~e~gF~G~VvSD~~~~~~~~~~~~~~~ 162 (511)
+ .++| |+||+||+++|++|++.+|||| ||++||+|||.|+++|++|||+||||+|+|||||.+|..+.. ..
T Consensus 179 ~~~~~l-~~~l~PF~~ai~~g~~~~VM~aHv~y~~id~~Pa~~s~~ll~~lLR~elGF~G~VvSD~l~m~~~~~----~~ 253 (340)
T 2oxn_A 179 DERETI-AQDMAIFRAQIEAGVLDAMMPAHVVYPHYDAQPASGSSYWLKQVLREELGFKGIVFSDDLSMEGAAV----MG 253 (340)
T ss_dssp CCCSCC-HHHHHHHHHHHHHTCCSEEEECSCBBTTTBSSCGGGCHHHHTCCCCCCTCCCSEEEEEEGGGSCHHH----HC
T ss_pred CCHHHH-HHHHHHHHHHHHcCCCCeeeeccccccccCCcCcccCHHHHHHHhhcccCCCeEEEcccchhhhhhc----cC
Confidence 3 3889 9999999999999889999999 999999999999999999999999999999999999976532 24
Q ss_pred CHHHHHHHchhcc
Q 010408 163 TPEEAAADAIKAG 175 (511)
Q Consensus 163 ~~~~a~~~ai~AG 175 (511)
+..+++.+||+||
T Consensus 254 ~~~ea~~~Al~AG 266 (340)
T 2oxn_A 254 GPVERSHQALVAG 266 (340)
T ss_dssp SHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHcC
Confidence 5789999999999
No 11
>4g6c_A Beta-hexosaminidase 1; ssgcid, niaid, structural genomics, Na institute of allergy and infectious diseases; 1.38A {Burkholderia cenocepacia} PDB: 4gnv_A*
Probab=100.00 E-value=1.8e-40 Score=339.39 Aligned_cols=156 Identities=21% Similarity=0.240 Sum_probs=132.7
Q ss_pred ceee-ecccccccCCCCCcccccccCCCHHHHHHHHHHHHHHHhcCCCCCCcEEEeecccccCCccCCCCCCcccccccc
Q 010408 8 GLTY-WSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNARV 86 (511)
Q Consensus 8 Gi~~-~aP~vdi~r~Pr~gR~~EsfgEDP~l~~~~a~a~v~G~Q~~~~~~~~V~a~~KHF~g~g~~~~~~~~r~~~~~~~ 86 (511)
|||+ |||++||..++.|-++.|||||||+++++|+.|+|+|+|+. ||++|+|||||||+++.+.+. .......
T Consensus 124 Gi~~~~aPv~Dv~~gr~~~iG~rsfgeDP~lv~~~a~A~v~Glq~~-----GV~a~~KHFpG~G~~~~dsh~-~~~v~~~ 197 (348)
T 4g6c_A 124 GIDMSFTPVLDLDYGHSKVIGDRAFHRDPRVVTLLAKSLNHGLSLA-----GMANCGKHFPGHGFAEADSHV-ALPTDDR 197 (348)
T ss_dssp TCCEECCCBCCCCCSCCTTTGGGSCCSSHHHHHHHHHHHHHHHHHT-----TCCCCEEEETCSSSCCC-----CCCEECC
T ss_pred CCCEeecCccCCCCCCCCCccCcCCCCCHHHHHHHHHHHHHHHHhc-----CCceeeCCCCCCCCccCCCCC-CCCcCCC
Confidence 9999 99999998443333456999999999999999999999998 899999999999998633221 1112245
Q ss_pred CHhHHHhhcCHHHHHHHHhCCcceeEee---ccCCCCccCccChHHHHHhhhhhcCCCcEEECCCCcccccccCCCCCCC
Q 010408 87 SKQDLEDTYNVPFKACVVEGKVASVMCS---YNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRT 163 (511)
Q Consensus 87 s~~~L~e~~L~PF~~ai~~g~~~sVM~s---yn~vng~pa~~s~~ll~~lLR~e~gF~G~VvSD~~~~~~~~~~~~~~~~ 163 (511)
+.++|++.||+||+++ ++| +.+|||| ||++||+|||.|+++|++|||+||||+|+|||||.+|..+. ...+
T Consensus 198 ~~~el~~~~l~PF~~a-~ag-~~~VM~aHv~y~~id~~Pa~~S~~ll~~lLR~elGF~G~VvSD~l~m~~~~----~~~~ 271 (348)
T 4g6c_A 198 TLDAILEQDVAPYDWL-GLS-LAAVIPAHVIYTQVDKRPAGFSRVWLQDILRGKLGFTGAIFSDDLSMEAAR----EGGT 271 (348)
T ss_dssp CHHHHHHTTSHHHHHH-GGG-CCEEEECSCEETTTCSSCGGGCHHHHCCCCCCCSCCCSEEEEEETTCGGGG----TTCC
T ss_pred CHHHHHHHHHHHHHHH-hcC-CCeEEecceeecCCCCccccCCHHHHHHHHhhccCCCeEEEccCCchhhhh----hcCC
Confidence 6777888899999999 776 9999999 99999999999999999999999999999999999998653 3456
Q ss_pred HHHHHHHchhcc
Q 010408 164 PEEAAADAIKAG 175 (511)
Q Consensus 164 ~~~a~~~ai~AG 175 (511)
..+++.+||+||
T Consensus 272 ~~e~a~~Al~AG 283 (348)
T 4g6c_A 272 LTQAADAALAAG 283 (348)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC
Confidence 889999999999
No 12
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=97.08 E-value=0.0016 Score=56.54 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=41.4
Q ss_pred eEEEEEEEEeCCCCC-cceEEEEEeeCCCCCCCcccccccccccccCCCCeEEEEEEecC
Q 010408 411 SLGLHVDIKNTGDMA-GTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHV 469 (511)
Q Consensus 411 ~~~v~v~V~NtG~~~-G~evvQlY~~~~~~~~~P~k~L~gF~kv~L~pGe~~~v~~~l~~ 469 (511)
.++++|+|+|.|..+ +.-.|.||+.. ++.+-+.+.|+||++++|+|.+.+
T Consensus 34 ~~ti~vtV~N~G~~~a~~~~V~lyvng---------~~v~t~~v~La~G~s~tv~f~~~~ 84 (127)
T 3idu_A 34 LAEYEVHVKNLGGIGVPSTKVRVYING---------TLYKNWTVSLGPKEEKVLTFNWTP 84 (127)
T ss_dssp CEEEEEEEEECSSSCEEEEEEEEEETT---------EEEEEEEEEECTTCEEEEEEEECC
T ss_pred EEEEEEEEEECCCCccCCcEEEEEECC---------EEEeeEEeccCCCCeEEEEEEEEc
Confidence 689999999999875 77889999954 234444568999999999999987
No 13
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=96.37 E-value=0.01 Score=50.43 Aligned_cols=62 Identities=10% Similarity=0.192 Sum_probs=49.7
Q ss_pred eEEEEEEEEeCCCC-CcceEEEEEeeCCCCCCCccccccccccc-ccCCCCeEEEEEEecCCCCeeEEeCCCCEEecCeE
Q 010408 411 SLGLHVDIKNTGDM-AGTHTLLVFAKPPAGNWSPNKQLIGFKKV-HVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGE 488 (511)
Q Consensus 411 ~~~v~v~V~NtG~~-~G~evvQlY~~~~~~~~~P~k~L~gF~kv-~L~pGe~~~v~~~l~~~~~ls~~d~~~~~~~~~G~ 488 (511)
.++++++|+|.|.. ++.-.|-||+.. .+.+.+.| .|.+|++++|+|.+.+ .. ++|.
T Consensus 20 ~~ti~atVkN~G~~~a~~~~V~ly~~g---------~~v~t~~v~~LaaG~s~tv~~~w~~-~~------------~~G~ 77 (114)
T 2l0d_A 20 VNTMTATIENQGNKDSTSFNVSLLVDG---------IVVDTQTVTSLESENSTNVDFHWTL-DG------------TANS 77 (114)
T ss_dssp EEEEEEEEEECSSSCBCCEEEEEEETT---------EEEEEEEESCBCBTCEEEEEEEEEC-CC------------SCSE
T ss_pred eEEEEEEEEECCCCCCCCEEEEEEECC---------EEEcceecccccCCCEEEEEEEEee-cC------------cCce
Confidence 68999999999975 677889999864 46677778 5999999999998876 20 3688
Q ss_pred EEEEEe
Q 010408 489 HSLHIG 494 (511)
Q Consensus 489 y~i~vG 494 (511)
|+|.+-
T Consensus 78 ytl~a~ 83 (114)
T 2l0d_A 78 YTLTVN 83 (114)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 888764
No 14
>2kut_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Geobacter metallireducens}
Probab=96.29 E-value=0.0029 Score=54.49 Aligned_cols=55 Identities=16% Similarity=0.259 Sum_probs=41.7
Q ss_pred eEEEEEEEEeCCCC-CcceEEEEEeeCCCCCCCccccccccccc-ccCCCCeEEEEEEecC
Q 010408 411 SLGLHVDIKNTGDM-AGTHTLLVFAKPPAGNWSPNKQLIGFKKV-HVTAGALQSVRLDIHV 469 (511)
Q Consensus 411 ~~~v~v~V~NtG~~-~G~evvQlY~~~~~~~~~P~k~L~gF~kv-~L~pGe~~~v~~~l~~ 469 (511)
.++++++|+|.|.. ++.--|.+|+..|.....++ |-..| .|+||++.+++|.+..
T Consensus 17 ~vTvsatVkN~Gt~~s~a~~V~~yl~~p~~gg~~v----gt~tv~~LaaG~s~t~~v~~~~ 73 (122)
T 2kut_A 17 EITVSARVTNRGAAEAHNVPVAVYLGNPAQGGVEI----GRDTISRIPVGGTGLARVQWKA 73 (122)
T ss_dssp EEEEEEEEECCSSSCBCCCCEEECSSCTTTCCCCC----BCCCCSCBCTTCEEECCEEEEC
T ss_pred eEEEEEEEEeCCCcccCcEEEEEEeCCCccCCeEE----eeEEccccCCCCeEEEEEEEec
Confidence 79999999999976 66788999999976444333 33335 5999999996665553
No 15
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=94.54 E-value=0.19 Score=42.87 Aligned_cols=68 Identities=10% Similarity=0.097 Sum_probs=48.7
Q ss_pred eEEEEEEEEeCCCCCcc------eEEEEEeeCCCCC-------CCcccccccccccccCCCCeEEEEEEecCCCCeeEEe
Q 010408 411 SLGLHVDIKNTGDMAGT------HTLLVFAKPPAGN-------WSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVD 477 (511)
Q Consensus 411 ~~~v~v~V~NtG~~~G~------evvQlY~~~~~~~-------~~P~k~L~gF~kv~L~pGe~~~v~~~l~~~~~ls~~d 477 (511)
.+.+.++|+|.|+.+-. --..+.|.+..+. .+---| .++...|+|||+.+.+++++.
T Consensus 19 ~v~~~ltv~N~s~~~v~l~f~Sgq~~Df~v~d~~G~~VwrwS~~~~FtQ--a~~~~tl~pGE~~~f~~~w~~-------- 88 (120)
T 3isy_A 19 QIKFNMSLKNQSERAIEFQFSTGQKFELVVYDSEHKERYRYSKEKMFTQ--AFQNLTLESGETYDFSDVWKE-------- 88 (120)
T ss_dssp CEEEEEEEEECSSSCEEEEESSSCCEEEEEECTTCCEEEETTTTCCCCC--CCEEEEECTTCEEEEEEEESS--------
T ss_pred eEEEEEEEEcCCCCcEEEEeCCCCEEEEEEECCCCCEEEEccccchhhh--hhceEEECCCCEEEEEEEeCC--------
Confidence 68999999999996422 2235566664432 233333 677888999999999999983
Q ss_pred CCCCEEecCeEEEEEE
Q 010408 478 KFGIRRIPMGEHSLHI 493 (511)
Q Consensus 478 ~~~~~~~~~G~y~i~v 493 (511)
.++||.|++.+
T Consensus 89 -----~~~pG~Ytl~a 99 (120)
T 3isy_A 89 -----VPEPGTYEVKV 99 (120)
T ss_dssp -----CCCSEEEEEEE
T ss_pred -----CCCCccEEEEE
Confidence 45899999864
No 16
>4ep8_B Urease subunit beta; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1a5l_B 1a5k_B 1a5n_B 1a5o_B 1ef2_B* 1ejr_B* 1ejs_B* 1ejt_B* 1eju_B* 1ejv_B* 1a5m_B* 1ejw_B* 1ejx_B* 4epb_B* 4epd_B* 4epe_B* 1fwa_B* 1fwb_B* 1fwc_B* 1fwd_B* ...
Probab=92.95 E-value=0.14 Score=41.79 Aligned_cols=51 Identities=24% Similarity=0.235 Sum_probs=30.8
Q ss_pred EEEEEEEEeCCCCCcceEEEEEeeCCCCCCCc-----cccccc-------ccccccCCCCeEEEEEE
Q 010408 412 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQLIG-------FKKVHVTAGALQSVRLD 466 (511)
Q Consensus 412 ~~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P-----~k~L~g-------F~kv~L~pGe~~~v~~~ 466 (511)
-+++++|+|||+|+ +|+=-...-....| ...=.| =+-|+.+|||+++|++.
T Consensus 20 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~r~V~LV 82 (101)
T 4ep8_B 20 ATCRVVVENHGDRP----IQVGSHYHFAEVNPALKFDRQQAAGYRLNIPAGTAVRFEPGQKREVELV 82 (101)
T ss_dssp CEEEEEEEECSSSC----EEEETTSCGGGSCTTEESCTTTTTTEEECSSTTCEEEECTTCEEEEEEE
T ss_pred CEEEEEEEeCCCcc----eEEccccChhHcCcceeecHhhccCceecccCCCeEeeCCCCeEEEEEE
Confidence 36889999999998 88732221110111 111112 23467899999999875
No 17
>4ac7_B Urease subunit beta; hydrolase, bacillus pasteurii; HET: CXM KCX FLC; 1.50A {Sporosarcina pasteurii} PDB: 1s3t_B* 3ubp_B* 1ie7_B* 4ubp_B* 1ubp_B* 2ubp_B*
Probab=91.41 E-value=0.26 Score=41.87 Aligned_cols=52 Identities=19% Similarity=0.134 Sum_probs=31.3
Q ss_pred EEEEEEEEeCCCCCcceEEEEEeeCCCCCCCc-----ccccccc-------cccccCCCCeEEEEEEe
Q 010408 412 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQLIGF-------KKVHVTAGALQSVRLDI 467 (511)
Q Consensus 412 ~~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P-----~k~L~gF-------~kv~L~pGe~~~v~~~l 467 (511)
-+++++|+|||+|+ +|+=-...-....| ...=.|+ +-|..+|||+++|++-=
T Consensus 26 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV~ 89 (126)
T 4ac7_B 26 EKTTIRVSNTGDRP----IQVGSHIHFVEVNKELLFDRAEGIGRRLNIPSGTAARFEPGEEMEVELTE 89 (126)
T ss_dssp CEEEEEEEECSSSC----EEEETTSCGGGSCTTEESCGGGGTTEEECSCTTCEEEECTTCEEEEEEEE
T ss_pred cEEEEEEEeCCCCC----EEEccccchhhcCchhhccHhhhcCccccccCCCeEeeCCCCeEEEEEEE
Confidence 36889999999998 88732221111111 1111122 34677999999998753
No 18
>4ubp_B Protein (urease (chain B)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.85.3.1 PDB: 1s3t_B* 3ubp_B* 1ie7_B* 1ubp_B* 2ubp_B*
Probab=91.41 E-value=0.26 Score=41.87 Aligned_cols=52 Identities=19% Similarity=0.134 Sum_probs=31.3
Q ss_pred EEEEEEEEeCCCCCcceEEEEEeeCCCCCCCc-----ccccccc-------cccccCCCCeEEEEEEe
Q 010408 412 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQLIGF-------KKVHVTAGALQSVRLDI 467 (511)
Q Consensus 412 ~~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P-----~k~L~gF-------~kv~L~pGe~~~v~~~l 467 (511)
-+++++|+|||+|+ +|+=-...-....| ...=.|+ +-|..+|||+++|++-=
T Consensus 26 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV~ 89 (126)
T 4ubp_B 26 EKTTIRVSNTGDRP----IQVGSHIHFVEVNKELLFDRAEGIGRRLNIPSGTAARFEPGEEMEVELTE 89 (126)
T ss_dssp CEEEEEEEECSSSC----EEEETTSCGGGSCTTEESCGGGGTTEEECSCTTCEEEECTTCEEEEEEEE
T ss_pred cEEEEEEEeCCCCC----EEEccccchhhcCchhhccHhhhcCccccccCCCeEeeCCCCeEEEEEEE
Confidence 36889999999998 88732221111111 1111122 34677999999998753
No 19
>1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A*
Probab=89.32 E-value=0.88 Score=49.03 Aligned_cols=104 Identities=13% Similarity=0.140 Sum_probs=64.9
Q ss_pred cccccCcCCCcCCceecccccCCCccccccccccccccccccccceeeccccCCCceeEEEEEEEEeCCC--CCcceEEE
Q 010408 354 VVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGD--MAGTHTLL 431 (511)
Q Consensus 354 ~lypFG~GLSYTtF~ys~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~V~NtG~--~~G~evvQ 431 (511)
.+|..|.|+.|..|..+.|..... ..+ . ..+.+.. +. +.+|+++|+|.+. ++|.+++
T Consensus 337 ~~ye~~~~i~~~~~~~~~l~~~~~-~~~-----------~---~~~~~~~----g~-~~~~~~~vtn~~~~~~~~~~~~- 395 (601)
T 1w8o_A 337 LLYEPGTGIRYANFNLAWLGGICA-PFT-----------I---PDVALEP----GQ-QVTVPVAVTNQSGIAVPKPSLQ- 395 (601)
T ss_dssp EEECCSSEEEEEEECHHHHTBCSC-CEE-----------C---CCEEECT----TC-EEEEEEEEECCSSSCBSSCEEE-
T ss_pred EEEecCCcceEEEecHHHhccccC-CCc-----------C---ccceecC----Cc-eeEEEEEEECCCceeccCceEE-
Confidence 467777788888888777663210 000 0 0111211 12 6899999999977 7898887
Q ss_pred EEeeCCCCCCCcccccccccccccCCCCeEEEEEEecCCCCeeEEeCCCCEEecCeEEEEEEeCCC
Q 010408 432 VFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLK 497 (511)
Q Consensus 432 lY~~~~~~~~~P~k~L~gF~kv~L~pGe~~~v~~~l~~~~~ls~~d~~~~~~~~~G~y~i~vG~ss 497 (511)
||+..... ..+ .-..++||++.++.|+|.. .+- +++|.|.|.+.-.+
T Consensus 396 ~~~~~~~~-------~~~-~~~~~~~g~~~t~~~~vt~-~~~----------~~~g~y~l~~~~~~ 442 (601)
T 1w8o_A 396 LDASPDWQ-------VQG-SVEPLMPGRQAKGQVTITV-PAG----------TTPGRYRVGATLRT 442 (601)
T ss_dssp EECCTTSE-------EEE-EECCBCTTCEEEEEEEEEC-CTT----------CCCEEEEEEEEEEE
T ss_pred EecCCCcE-------Eec-cccccCCCCceEEEEEEec-CCC----------CCCCcEEeeEEEEe
Confidence 88743322 111 2367899999999888886 431 45788877665433
No 20
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.65 E-value=1.7 Score=35.70 Aligned_cols=61 Identities=11% Similarity=0.211 Sum_probs=37.0
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEeeCCCCCCCcccccccccccccCCCCeEEEEEEecCCCCeeEEe
Q 010408 411 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVD 477 (511)
Q Consensus 411 ~~~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv~L~pGe~~~v~~~l~~~~~ls~~d 477 (511)
..+.+++++|+|+.+..--. .......... --.-..+-.|+||++.+|++++.+ +....++
T Consensus 27 ~~~~~~~l~N~g~~p~~~~~----~~~~~~~~~~-f~v~p~~g~i~pg~~~~i~V~f~~-~~~g~f~ 87 (112)
T 2e6j_A 27 AHCYEAILYNKGSIDALFNM----TPPTSALGAC-FVFSPKEGIIEPSGVQAIQISFSS-IILGNFE 87 (112)
T ss_dssp CEEEEEEEEECCSSCEEEEE----CCCSSHHHHH-CEEESSEEEECTTBCCEEEEEECC-CCCEEEE
T ss_pred EEEEEEEEEECCcceEEEEE----ecCCccccCc-EEEECCcCEECCCCEEEEEEEEEC-CCcceEE
Confidence 46778999999998643222 1111100000 001234456999999999999998 6665554
No 21
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=87.55 E-value=1.3 Score=44.43 Aligned_cols=55 Identities=13% Similarity=0.245 Sum_probs=37.5
Q ss_pred eEEEEEEEEeCCCCCcceEEEE---------EeeCCCCC--CCcccccccccccc------cCCCCeEEEEEEecC
Q 010408 411 SLGLHVDIKNTGDMAGTHTLLV---------FAKPPAGN--WSPNKQLIGFKKVH------VTAGALQSVRLDIHV 469 (511)
Q Consensus 411 ~~~v~v~V~NtG~~~G~evvQl---------Y~~~~~~~--~~P~k~L~gF~kv~------L~pGe~~~v~~~l~~ 469 (511)
+++++++|||.|+.+ |+| |+.+.... ..-..+|.+.+-+. ++|||+++|+++.+-
T Consensus 265 ~l~~~~~VtN~g~~p----vrlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~~pI~PGETr~~~v~a~d 336 (382)
T 1yew_A 265 AMRMKLTITNHGNSP----IRLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDNSPLAPGETRTVDVTASD 336 (382)
T ss_dssp EEEEEEEEEECSSSC----EEEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCCSCBCTTCEEEEEEEEEC
T ss_pred EEEEEEEEEcCCCCc----eEeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCCCCcCCCceeEEEEEeeh
Confidence 799999999998765 555 44443221 22344666554433 899999999999764
No 22
>2x3c_A Toxic extracellular endopeptidase; hydrolase; 1.99A {Aeromonas salmonicida subsp} PDB: 2x3a_A 2x3b_A
Probab=85.72 E-value=1.3 Score=44.79 Aligned_cols=62 Identities=18% Similarity=0.155 Sum_probs=35.3
Q ss_pred eEEEEEEEEeCCCCCc------------ceEEEEEeeC---CCCCCC---cccccccccccccCCCCeEEEEEEecCCCC
Q 010408 411 SLGLHVDIKNTGDMAG------------THTLLVFAKP---PAGNWS---PNKQLIGFKKVHVTAGALQSVRLDIHVCKH 472 (511)
Q Consensus 411 ~~~v~v~V~NtG~~~G------------~evvQlY~~~---~~~~~~---P~k~L~gF~kv~L~pGe~~~v~~~l~~~~~ 472 (511)
.+.|+++|||+|+.+= .+.++++-.. |....+ ..-.+..| +.|+||||.+++|+|....+
T Consensus 37 ~~~vk~tvtN~g~~~~~lLk~~~lD~~~~~~~~V~~~G~~v~f~Gi~~~~~~~~~d~f--~~L~pG~Sve~~~dla~~yd 114 (343)
T 2x3c_A 37 DVRVNLTLTNTGDKPIRLLKWQLPGSDDAPLFLVERDGQPVSYEGALIKRAAPTDKDF--QLLKAGQSLTVQAEVSGLYD 114 (343)
T ss_dssp CCEEEEEEEECSSSCEEEEGGGSCSSSCCCCEEEEETTEECCBCSCCCCCCCCCGGGE--EEECTTCEEEEEEECTTTBT
T ss_pred CeEEEEEEEeCCCCceEeeccCCCCcCccceEEEEeCCcccceeeEEEeccCCChhhc--EEeCCCCeEEEEEehhhccc
Confidence 4789999999998651 1233443111 000101 11122232 35899999999999975345
Q ss_pred ee
Q 010408 473 LS 474 (511)
Q Consensus 473 ls 474 (511)
|+
T Consensus 115 Ls 116 (343)
T 2x3c_A 115 MS 116 (343)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 23
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=85.19 E-value=1.7 Score=37.96 Aligned_cols=54 Identities=15% Similarity=0.132 Sum_probs=33.3
Q ss_pred EEEEEEEEeCCCCCcceEEEEEeeCCC-CCCCccccccc-ccccccCCCCeEEEEEEecC
Q 010408 412 LGLHVDIKNTGDMAGTHTLLVFAKPPA-GNWSPNKQLIG-FKKVHVTAGALQSVRLDIHV 469 (511)
Q Consensus 412 ~~v~v~V~NtG~~~G~evvQlY~~~~~-~~~~P~k~L~g-F~kv~L~pGe~~~v~~~l~~ 469 (511)
.+-+++|+|||.++..--.+ .+. ........|.= =.+-.|.|||+..|++++..
T Consensus 45 ~~~~l~I~Ntg~vpa~F~f~----~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~v 100 (140)
T 3qbt_B 45 QKEKFQISNNGQVPCHFSFI----PKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYV 100 (140)
T ss_dssp EEEEEEEEECSSSCEEEEEE----CCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECB
T ss_pred eeeEEEEEcCCccceEEEEe----cCCCchhhhhHhhhcCCcccccCCCCeeEEEEEEEE
Confidence 46789999999998654433 321 11100011111 12346999999999999986
No 24
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...
Probab=83.47 E-value=2.3 Score=36.42 Aligned_cols=55 Identities=24% Similarity=0.433 Sum_probs=35.0
Q ss_pred EEEEEEEeCCCCC----cceEEEEEeeCCCC----C--CCccc--------ccccccccccCCCCeEEEEEEec
Q 010408 413 GLHVDIKNTGDMA----GTHTLLVFAKPPAG----N--WSPNK--------QLIGFKKVHVTAGALQSVRLDIH 468 (511)
Q Consensus 413 ~v~v~V~NtG~~~----G~evvQlY~~~~~~----~--~~P~k--------~L~gF~kv~L~pGe~~~v~~~l~ 468 (511)
+|+++++|+|+.+ |.+.|-.=-.+... . ..|.. +...-.++ |.|||+.+|+|+.+
T Consensus 28 ~V~~~l~N~G~~p~~~M~Hn~Vl~~~~~~~~~~~~~m~~~~~~~y~~~~d~~via~t~~-l~pGes~~vtf~~~ 100 (125)
T 3fsa_A 28 QFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDYLKPDDSRVIAHTKL-IGSGEKDSVTFDVS 100 (125)
T ss_dssp EEEEEEECCSSCCHHHHCBCCEEEEHHHHHHHHHHHHHHCGGGTTSCTTCTTCCEECCC-BCTTCEEEEEEEGG
T ss_pred EEEEEEEECCcccccccCceEEEcccchHHHHHHHHHhcChhhccCCCCCccceeccce-eCCCcEEEEEEeCc
Confidence 6888999999998 99998772111110 0 01111 11222233 89999999999987
No 25
>3qga_A UREA2, fusion of urease beta and gamma subunits; iron metalloenzyme, alpha-beta barrel, hydrolase; HET: FME KCX; 3.00A {Helicobacter mustelae} PDB: 3qgk_A*
Probab=83.26 E-value=1.1 Score=41.59 Aligned_cols=51 Identities=18% Similarity=0.119 Sum_probs=30.6
Q ss_pred EEEEEEEeCCCCCcceEEEEEeeCCCCCCCcc-----cccccc-------cccccCCCCeEEEEEEe
Q 010408 413 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPN-----KQLIGF-------KKVHVTAGALQSVRLDI 467 (511)
Q Consensus 413 ~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~-----k~L~gF-------~kv~L~pGe~~~v~~~l 467 (511)
+++++|+|||+|+ +|+=-...-....|. ..=.|| +-|..+||++++|++-=
T Consensus 126 ~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV~ 188 (225)
T 3qga_A 126 ITELKVTNKGPKS----LHVGSHFHFFEANRALEFDREKAYGKRLDIPSGNTLRIGAGETKTVHLIP 188 (225)
T ss_dssp CEEEEEEECSSSC----EEEETTSCGGGSCTTEESCGGGGTTEEECSCTTCEEEECTTCEEEEEEEE
T ss_pred eEEEEEEECCCCc----eeeccccchhhcCchhhccHHHhCCcccccCCCCeEeeCCCCeeEEEEEE
Confidence 5788999999999 787322211111111 111122 34677999999998753
No 26
>1e9y_A Urease subunit alpha; hydrolase, dodecamer; HET: KCX; 3.00A {Helicobacter pylori} SCOP: b.85.3.1 d.8.1.1 PDB: 1e9z_A*
Probab=82.01 E-value=1.1 Score=42.04 Aligned_cols=51 Identities=22% Similarity=0.194 Sum_probs=31.0
Q ss_pred EEEEEEEeCCCCCcceEEEEEeeCCCCCCCc-----ccccccc-------cccccCCCCeEEEEEEe
Q 010408 413 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQLIGF-------KKVHVTAGALQSVRLDI 467 (511)
Q Consensus 413 ~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P-----~k~L~gF-------~kv~L~pGe~~~v~~~l 467 (511)
+++++|+|||+|+ +|+=-...-....| ...=.|| +-|+.+||++++|++.=
T Consensus 126 ~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTAVRFEPG~~r~V~LV~ 188 (238)
T 1e9y_A 126 AVSVKVKNVGDRP----VQIGSHFHFFEVNRCLDFDREKTFGKRLDIAAGTAVRFEPGEEKSVELID 188 (238)
T ss_dssp CCEEEEEECSSSC----EEEETTSCGGGSCTTEESCGGGGTTEEECSSTTCEEEECTTCEEEEEEEE
T ss_pred eEEEEEEeCCCCc----eEeccccchHhcCccccccHHHhCCcccCcCCCCeEeeCCCCeeEEEEEE
Confidence 5788999999999 88732221111111 1111122 34677999999999854
No 27
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A
Probab=79.59 E-value=3.2 Score=35.58 Aligned_cols=56 Identities=18% Similarity=0.254 Sum_probs=31.3
Q ss_pred EEEEEEEeCCCCC----cceEEEEEeeCCC---------C---CCCccccccc-ccccccCCCCeEEEEEEec
Q 010408 413 GLHVDIKNTGDMA----GTHTLLVFAKPPA---------G---NWSPNKQLIG-FKKVHVTAGALQSVRLDIH 468 (511)
Q Consensus 413 ~v~v~V~NtG~~~----G~evvQlY~~~~~---------~---~~~P~k~L~g-F~kv~L~pGe~~~v~~~l~ 468 (511)
+|+|+++|+|+.+ +.+++-.=-..+. . .--|...-+. +.-..|.|||+.+|+|+.+
T Consensus 28 ~vtv~~~N~g~~~~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~v~~~~~~~~~~t~~l~pGet~svtf~~~ 100 (129)
T 1cuo_A 28 EFTVNFEHKGHMPKTGMGHNWVLAKSADVGDVAKEGAHAGADNNFVTPGDKRVIAFTPIIGGGEKTSVKFKVS 100 (129)
T ss_dssp EEEEEEEECSSSCHHHHCBCCEEEEGGGHHHHHHHHHTTCGGGTTSCTTCTTCSEECCCBCTTCEEEEEEEGG
T ss_pred EEEEEEEECCCCcccccccceEEecCcchhhhHHHhhhccccccccccccccceeeeeEECCCCEEEEEEecc
Confidence 5788889999987 6776543111100 0 0001000000 1122489999999999986
No 28
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=79.31 E-value=3.3 Score=35.51 Aligned_cols=53 Identities=19% Similarity=0.313 Sum_probs=31.1
Q ss_pred EEEEEEEeCCCCC----cceEEEEEeeCCC------------CC----CCcccccccccccccCCCCeEEEEEEec
Q 010408 413 GLHVDIKNTGDMA----GTHTLLVFAKPPA------------GN----WSPNKQLIGFKKVHVTAGALQSVRLDIH 468 (511)
Q Consensus 413 ~v~v~V~NtG~~~----G~evvQlY~~~~~------------~~----~~P~k~L~gF~kv~L~pGe~~~v~~~l~ 468 (511)
+|+|+++|+|+.+ +.+++-.=-.... .. ..+ +.| +.-..|.|||+.+|+|..+
T Consensus 28 ~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~t~~l~pGet~svtf~~~ 100 (129)
T 2ccw_A 28 QFTMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDYVKAGDT-RVI--AHTKVIGGGESDSVTFDVS 100 (129)
T ss_dssp EEEEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTTSCTTCT-TEE--EECCCBCTTCEEEEEEEGG
T ss_pred EEEEEEEECCCcccccCcceEEEcCccchhhhHHHhhhhcccccccccccc-cce--eeeeEECCCCEEEEEEecc
Confidence 5789999999987 6776543100000 00 000 111 1112489999999999986
No 29
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A
Probab=78.68 E-value=3.9 Score=35.03 Aligned_cols=64 Identities=17% Similarity=0.336 Sum_probs=35.8
Q ss_pred EEEEEEEeCCCCC----cceEEEEEeeCC---------CC---CCCc---ccccccccccccCCCCeEEEEEEec---CC
Q 010408 413 GLHVDIKNTGDMA----GTHTLLVFAKPP---------AG---NWSP---NKQLIGFKKVHVTAGALQSVRLDIH---VC 470 (511)
Q Consensus 413 ~v~v~V~NtG~~~----G~evvQlY~~~~---------~~---~~~P---~k~L~gF~kv~L~pGe~~~v~~~l~---~~ 470 (511)
+|+|+++|+|+.+ +.++|-.=-... .. .--| .+.| ...+ .|.|||+.+|+|..+ +.
T Consensus 28 ~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~-~~t~-~l~pGet~svtf~~~~l~~G 105 (128)
T 1nwp_A 28 TFTVELTHSGSLPKNVMGHNLVISKEADMQPIATDGLSAGIDKQYLKDGDARVI-AHTK-VIGAGEKDSVTFDVSKLAAG 105 (128)
T ss_dssp EEEEEEEECSSCCHHHHCBCCEEEEGGGHHHHHHHHTTTCGGGTTSCTTCTTEE-EECC-CBCTTCEEEEEEEGGGSCTT
T ss_pred EEEEEEEECCCCcccCCCceEEEccccchhhHHHHHhhccccccccccccchhh-eeee-eeCCCCEEEEEEeccccCCC
Confidence 5788999999987 677664310000 00 0000 0011 1122 489999999999986 31
Q ss_pred CCeeEEeC
Q 010408 471 KHLSVVDK 478 (511)
Q Consensus 471 ~~ls~~d~ 478 (511)
.++.||-.
T Consensus 106 ~~Y~f~C~ 113 (128)
T 1nwp_A 106 EKYGFFCS 113 (128)
T ss_dssp SCEEEECC
T ss_pred ceEEEEEC
Confidence 23666643
No 30
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=77.33 E-value=4.7 Score=34.50 Aligned_cols=63 Identities=13% Similarity=0.288 Sum_probs=35.5
Q ss_pred EEEEEEEeCCCCC----cceEEEEEeeC------------CCCCCCc---ccccccccccccCCCCeEEEEEEec---CC
Q 010408 413 GLHVDIKNTGDMA----GTHTLLVFAKP------------PAGNWSP---NKQLIGFKKVHVTAGALQSVRLDIH---VC 470 (511)
Q Consensus 413 ~v~v~V~NtG~~~----G~evvQlY~~~------------~~~~~~P---~k~L~gF~kv~L~pGe~~~v~~~l~---~~ 470 (511)
+|+|+++|+|+.+ +.++|-.=-.. +...--| .+.| +.-..|.|||+.+|+|..+ +.
T Consensus 27 ~vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~--~~t~~l~pGes~~vtf~~~~l~~G 104 (128)
T 2iaa_C 27 EFTINLKHTGKLPKAAMGHNVVVSKKSDESAVATDGMKAGLNNDYVKAGDERVI--AHTSVIGGGETDSVTFDVSKLKEG 104 (128)
T ss_dssp EEEEEEEECSCSCHHHHCBCCEEEETTHHHHHHHHHHHHCGGGTTSCTTCTTEE--EECCCBCTTCEEEEEEESSCCCTT
T ss_pred EEEEEEEECCCCcccCCCceEEEccccchhhHHHhhhhccccccccccccchhh--ccceeeCCCCEEEEEEeccccCCC
Confidence 5788999999987 77766431000 0000000 0111 1122479999999999985 31
Q ss_pred CCeeEEe
Q 010408 471 KHLSVVD 477 (511)
Q Consensus 471 ~~ls~~d 477 (511)
.++.||-
T Consensus 105 ~~Y~f~C 111 (128)
T 2iaa_C 105 EDYAFFC 111 (128)
T ss_dssp CCEEEEC
T ss_pred ceEEEEE
Confidence 1466664
No 31
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.74 E-value=3.2 Score=34.92 Aligned_cols=58 Identities=10% Similarity=0.117 Sum_probs=38.3
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEeeCCCCCCCcccccccccccccCCCCeEEEEEEecCCCCeeEEeCC
Q 010408 411 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKF 479 (511)
Q Consensus 411 ~~~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv~L~pGe~~~v~~~l~~~~~ls~~d~~ 479 (511)
.-+.++.|+|+|+.+++-..+. ..|- +-.|. +-.|+|||+.+|+++..+ .....++..
T Consensus 42 ~~~~~~~l~N~g~~~~~f~~~~--~~~F-~i~P~-------~g~L~pg~~~~i~V~F~P-~~~g~~~~~ 99 (122)
T 2ys4_A 42 STQKILLVRNIGNKNAVFHIKT--CRPF-SIEPA-------IGTLNVGESMQLEVEFEP-QSVGDHSGR 99 (122)
T ss_dssp CEEEEEEEECCSSSCEEEEEEC--CTTE-EEESS-------EEEECTTCEEEEEEEECC-SSSBCCCCB
T ss_pred eEEEEEEEEECCCCCEEEEEec--CCCe-EEECC-------cCEECCCCEEEEEEEEEc-CCCccEEEE
Confidence 4577899999999987643332 1110 02232 246899999999999999 655554433
No 32
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=71.67 E-value=5.4 Score=40.45 Aligned_cols=53 Identities=17% Similarity=0.212 Sum_probs=33.8
Q ss_pred eEEEEEEEEeCCCCCcceEEEE---------EeeCCCCC--CCcccc------cccccccccCCCCeEEEEEEecC
Q 010408 411 SLGLHVDIKNTGDMAGTHTLLV---------FAKPPAGN--WSPNKQ------LIGFKKVHVTAGALQSVRLDIHV 469 (511)
Q Consensus 411 ~~~v~v~V~NtG~~~G~evvQl---------Y~~~~~~~--~~P~k~------L~gF~kv~L~pGe~~~v~~~l~~ 469 (511)
.++++++|||+|+.+ ||| |+.+.... ....++ |. =.. -++|||+++|+++++-
T Consensus 299 ~l~~~~~VtN~g~~p----vrlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~-s~~-pI~PGETrt~~V~a~d 368 (419)
T 3rfr_A 299 ELTINVKVKNGTSQP----VRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLS-NDD-VIAPGESKEIVVKIQD 368 (419)
T ss_dssp EEEEEEEEECCSSSC----BEEEEEECSSCEEECTTTCSSCCCCCTTTEESCCCC-CCC-CBCTTCEEEEEEEEEC
T ss_pred EEEEEEEEecCCCCc----eEEeeEEEccEEEeCcccccCCCCCchhhhhccCCC-CCC-CcCCCcceEEEEEeeh
Confidence 799999999999865 343 22221111 111223 44 334 6999999999999874
No 33
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=68.27 E-value=8.4 Score=35.87 Aligned_cols=50 Identities=10% Similarity=0.167 Sum_probs=34.0
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEeeCCCCC-CCcccccccccccccCCCCeEEEEEEecC
Q 010408 411 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLDIHV 469 (511)
Q Consensus 411 ~~~v~v~V~NtG~~~G~evvQlY~~~~~~~-~~P~k~L~gF~kv~L~pGe~~~v~~~l~~ 469 (511)
..+.+++++|+|+.+- +++--..... ..| .+.|-.|+|||+.+++++++.
T Consensus 135 ~~~~~f~i~N~G~~pL----~I~~v~~scgct~~-----~~~~~~i~PGe~~~i~v~~~~ 185 (220)
T 2qsv_A 135 TTKAAIEIRNVGAGPL----RLHSVTTRNPALTA-----VPDRTEIKPGGSTLLRIAVDP 185 (220)
T ss_dssp CEEEEEEEEECSSSCE----EEEEEEECSTTEEE-----EESCSEECTTCEEEEEEEECH
T ss_pred eEEEEEEEEECCCCCE----EEEEEEeCCCCEee-----ecCCccCCCCCEEEEEEEEec
Confidence 5778999999999863 3321111111 222 256777999999999999987
No 34
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*
Probab=65.38 E-value=6 Score=45.21 Aligned_cols=58 Identities=17% Similarity=0.283 Sum_probs=38.5
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEeeC--CCCC---CCcccccccc--cccccCCCCeEEEEEEecC
Q 010408 411 SLGLHVDIKNTGDMAGTHTLLVFAKP--PAGN---WSPNKQLIGF--KKVHVTAGALQSVRLDIHV 469 (511)
Q Consensus 411 ~~~v~v~V~NtG~~~G~evvQlY~~~--~~~~---~~P~k~L~gF--~kv~L~pGe~~~v~~~l~~ 469 (511)
.++++++|+|+|+.+...+.++-+.. |... ..|. .|.-+ ++|.|+|||+++++++++.
T Consensus 500 ~~~~~~tv~N~g~~~~~~~y~~~v~~~~~~~~~~~v~p~-~l~~~~~~~vtv~ag~~~~~~vt~~~ 564 (926)
T 1xf1_A 500 KFEVTVNVHNKSDKPQELYYQATVQTDKVDGKHFALAPK-VLYETSWQKITIPANSSKQVTVPIDA 564 (926)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEEEEEEEEETTEEEEEEE-EEEECCCEEEEECTTEEEEEEEEEEC
T ss_pred cEEEEEEEEEeCCCceeEEEEEEEEeccCCCceEEeccc-eeEeccCCeEEECCCCEEEEEEEEEc
Confidence 57899999999987655444433322 2221 2343 34322 4578999999999999986
No 35
>4gy7_A Urease; JACK bean, hydrolase, ME binding, nickel; HET: CME KCX; 1.49A {Canavalia ensiformis} PDB: 3la4_A* 4h9m_A*
Probab=64.92 E-value=5.6 Score=44.92 Aligned_cols=49 Identities=20% Similarity=0.242 Sum_probs=31.3
Q ss_pred EEEEEEEEeCCCCCcceEEEEEeeCCCCCCCcccccc-----cc---------cccccCCCCeEEEEEE
Q 010408 412 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLI-----GF---------KKVHVTAGALQSVRLD 466 (511)
Q Consensus 412 ~~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~k~L~-----gF---------~kv~L~pGe~~~v~~~ 466 (511)
-.++++|+|||+|+ +|+=-+..--...| .|. +| +-|+.+|||+|+|++.
T Consensus 151 ~~~~~~v~~~~~r~----~~v~sh~hf~e~n~--~l~fdr~~~~g~rl~~~~g~~~rf~pg~~~~v~l~ 213 (840)
T 4gy7_A 151 KAVILKVTSKGDRP----IQVGSHYHFIEVNP--YLTFDRRKAYGMRLNIAAGTAVRFEPGDCKSVTLV 213 (840)
T ss_dssp EEEEEEEEECCSSC----EEEETTSCGGGSCT--TEEBCHHHHTTEEECSCTTCEEEECTTCEEEEEEE
T ss_pred ceEEEEEEeCCCCc----eEeccccchhhcCc--ccccchhhhccccccccCCCceeeCCCCeeEEEEE
Confidence 46889999999999 88732221111222 222 11 2367799999999985
No 36
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}
Probab=64.72 E-value=6.9 Score=35.13 Aligned_cols=23 Identities=17% Similarity=0.107 Sum_probs=17.0
Q ss_pred ccCCCCeEEEEEEec---CCCCeeEEe
Q 010408 454 HVTAGALQSVRLDIH---VCKHLSVVD 477 (511)
Q Consensus 454 ~L~pGe~~~v~~~l~---~~~~ls~~d 477 (511)
.|.|||+.+|+|.++ + -.+.||-
T Consensus 125 ~l~pGet~svtf~~~~lkp-G~Y~f~C 150 (167)
T 3ay2_A 125 LIGGGEESSLTLDPAKLAD-GDYKFAC 150 (167)
T ss_dssp CBCTTCEEEEEECGGGGTT-SCEEEEC
T ss_pred eeCCCCEEEEEEecCCCCC-cEEEEEc
Confidence 489999999999975 3 3455543
No 37
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=64.13 E-value=17 Score=30.92 Aligned_cols=18 Identities=6% Similarity=-0.001 Sum_probs=14.6
Q ss_pred cccccCCCCeEEEEEEec
Q 010408 451 KKVHVTAGALQSVRLDIH 468 (511)
Q Consensus 451 ~kv~L~pGe~~~v~~~l~ 468 (511)
..+.|.|||+.+++|+.+
T Consensus 97 ~t~~l~pGet~~v~f~~~ 114 (139)
T 2aan_A 97 ESPLANGNETVEVTFTAP 114 (139)
T ss_dssp ECCCBCTTCEEEEEEECC
T ss_pred cccccCCCCEEEEEEECC
Confidence 345589999999999875
No 38
>3kmh_A D-lyxose isomerase; cupin beta-barrel, structural genomics, montreal-kingston BA structural genomics initiative, BSGI; 1.58A {Escherichia coli O157} PDB: 3mpb_A*
Probab=62.47 E-value=6.7 Score=37.17 Aligned_cols=47 Identities=15% Similarity=0.154 Sum_probs=32.0
Q ss_pred EEEeCCCCCcceEEEEEeeCCCCC--CC--------cccccccccccccCCCCeEEEEEEecC
Q 010408 417 DIKNTGDMAGTHTLLVFAKPPAGN--WS--------PNKQLIGFKKVHVTAGALQSVRLDIHV 469 (511)
Q Consensus 417 ~V~NtG~~~G~evvQlY~~~~~~~--~~--------P~k~L~gF~kv~L~pGe~~~v~~~l~~ 469 (511)
++.|-|. |.=+|+||.+++... .. -.+.+..+.+|.|.||||- +|.+
T Consensus 130 diinRgG--G~L~v~Ly~~~~~~~~~~~~v~V~~DG~~~~~~aG~~i~L~PGESi----Tl~P 186 (246)
T 3kmh_A 130 DIINRGG--GNLIVELWNADSNEQTADSDITVVIDGCRQKHTAGSQLRLSPGESI----CLPP 186 (246)
T ss_dssp EEEEEEE--SCEEEEEEEBCTTSSBCCSCEEEEETTEEEEECTTCEEEECTTCEE----EECT
T ss_pred cEEecCC--CeEEEEEEecCCCccccCCCeEEecCCeEEEeCCCCEEEECCCCeE----ecCC
Confidence 4456544 566788888876532 11 2457888999999999974 4565
No 39
>4dzg_A PLIG; lysozyme inhibitor, G-type lysozyme binding, hydrolase inhib; HET: MLY; 2.02A {Aeromonas hydrophila subsp}
Probab=58.40 E-value=13 Score=31.02 Aligned_cols=43 Identities=16% Similarity=0.182 Sum_probs=22.4
Q ss_pred ccCCCCeEEEEEEecCCCCeeEEeCC---------------CCE--Eec-CeEEEEEEeCC
Q 010408 454 HVTAGALQSVRLDIHVCKHLSVVDKF---------------GIR--RIP-MGEHSLHIGDL 496 (511)
Q Consensus 454 ~L~pGe~~~v~~~l~~~~~ls~~d~~---------------~~~--~~~-~G~y~i~vG~s 496 (511)
.+++||+-+|+++-...-.|++++.. +.| .++ .|.|+|.|...
T Consensus 35 ~a~aGQ~l~V~ls~~~~~~f~I~~P~~~~~~~l~~g~~~~~~~~~g~LP~sG~Y~i~V~~~ 95 (114)
T 4dzg_A 35 VAXAGQTMTVXIGGSSNANFNVFAPGAQPGQAEAIGRNDGDGQWQGALPASGXYLIQVYQM 95 (114)
T ss_dssp CC-CCCEEEC-CEESTTCEEEEECTTCCTTTSCCSEECCTTSCCEEECSSCC-CEEEEECC
T ss_pred EecCCCEEEEEeCCCCcEEEEEECCCCCcccceeccccCCcceEEEEecCCCcEEEEEEec
Confidence 35667766666632221124444332 268 444 79999999964
No 40
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=57.99 E-value=26 Score=35.27 Aligned_cols=55 Identities=15% Similarity=0.042 Sum_probs=34.3
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEeeCC-CCCCCcccccccc-cccccCCCCeEEEEEEecC
Q 010408 411 SLGLHVDIKNTGDMAGTHTLLVFAKPP-AGNWSPNKQLIGF-KKVHVTAGALQSVRLDIHV 469 (511)
Q Consensus 411 ~~~v~v~V~NtG~~~G~evvQlY~~~~-~~~~~P~k~L~gF-~kv~L~pGe~~~v~~~l~~ 469 (511)
..+-+++|+|||.++.. .=+..+ .....+...|.=. .+-.|.|||+..|++++..
T Consensus 47 ~~~~~l~i~N~g~~pa~----f~f~~~~~~~~~~~~wl~v~p~~g~l~Pge~~~i~l~~~v 103 (366)
T 3qis_A 47 LQKEKFQISNNGQVPCH----FSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYV 103 (366)
T ss_dssp CEEEEEEEEECSSSCEE----EEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECB
T ss_pred eEEEEEEEEecCCceEE----EEEEeCCCCCCCCCCcEEEeCCccEECCCCEEEEEEEEEE
Confidence 35678999999999844 333332 2222221122211 2347999999999999987
No 41
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=53.65 E-value=34 Score=31.90 Aligned_cols=53 Identities=19% Similarity=0.118 Sum_probs=35.5
Q ss_pred EEEEEEEeCCCCCcceEEEEEeeCCCCC---CCcccccccccccccCCCCeEEEEEEecC
Q 010408 413 GLHVDIKNTGDMAGTHTLLVFAKPPAGN---WSPNKQLIGFKKVHVTAGALQSVRLDIHV 469 (511)
Q Consensus 413 ~v~v~V~NtG~~~G~evvQlY~~~~~~~---~~P~k~L~gF~kv~L~pGe~~~v~~~l~~ 469 (511)
.++++|+|+|+.+ -.||..+.+.... ..|..-.=-. .+|+||+.++|+|....
T Consensus 29 ~~sl~l~N~~~~p--~LvQswv~~~~~~~~~~~pFivtPPl--~Rl~p~~~q~lRI~~~~ 84 (218)
T 4ay0_A 29 GVMVSVKNTQDYP--VLIQSRIYDENKEKESEDPFVVTPPL--FRLDAKQQNSLRIAQAG 84 (218)
T ss_dssp CEEEEEECCSSSC--EEEEEEEECTTSCCCSSCSEEEESSE--EEECTTCEEEEEEEECS
T ss_pred EEEEEEEcCCCCC--EEEEEEEecCCCCccccCCEEECCCe--EEeCCCCceEEEEEecC
Confidence 4789999999874 7999999765432 2221111111 14799999999997653
No 42
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=51.45 E-value=68 Score=29.47 Aligned_cols=51 Identities=14% Similarity=0.079 Sum_probs=31.9
Q ss_pred EEEEEEEEeCCCCCcceEEEEEeeCCCCCCCccccccccc-ccccCCCCeEEEEEEecCCCCe
Q 010408 412 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFK-KVHVTAGALQSVRLDIHVCKHL 473 (511)
Q Consensus 412 ~~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~-kv~L~pGe~~~v~~~l~~~~~l 473 (511)
.+.+++++|+|+.+=.=. ++ +.|. -++.-. ...|+|||+.+++++++. +.+
T Consensus 21 ~~~~~~i~N~g~~pl~i~-~~--~~p~-------~~~~~~~~~~I~PG~~g~I~vt~~~-~~~ 72 (220)
T 2qsv_A 21 GVVRLVVNNTDESDLQVA-VV--SLPS-------FVSLDDRAFRLQAREPRELNLSLAV-PRN 72 (220)
T ss_dssp CEEEEEEEECSSSCEEEE-EE--ECCT-------TEECSCCEEEECSSSCEEEEEEECC-CTT
T ss_pred ceEEEEEEeCCCCceEEE-ec--cCCC-------ceEeeeCcceeCCCCceEEEEEEcc-hhc
Confidence 466899999999774322 11 1111 011111 145899999999999997 544
No 43
>3hrz_B Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_G* 3hs0_B*
Probab=50.10 E-value=44 Score=31.67 Aligned_cols=60 Identities=8% Similarity=-0.013 Sum_probs=38.6
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEeeCCCCC-CCcccccccccccccCCCCeEEEEEEecCCCCe
Q 010408 411 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHL 473 (511)
Q Consensus 411 ~~~v~v~V~NtG~~~G~evvQlY~~~~~~~-~~P~k~L~gF~kv~L~pGe~~~v~~~l~~~~~l 473 (511)
.+.+.++|-|..+..-+-.|+|...+.... ..+..+ --+++.|.|+++++|.|.|.+ ..+
T Consensus 97 ~~~l~~~V~Ny~~~~~~v~V~l~~~~~~~~~~~~~~~--~~~~v~v~a~~~~~v~f~i~p-~~~ 157 (252)
T 3hrz_B 97 QVEIRAILHNYVNEDIYVRVELLYNPAFCSASTKGQR--YRQQFPIKALSSRAVPFVIVP-LEQ 157 (252)
T ss_dssp CEEEEEEEEECSSSCEEEEEEECCCTTEEESCCSSCC--EEEEEEECTTEEEEEEEEEEE-CSS
T ss_pred EEEEEEEEEcccCceEEEEEEEEcCCceEeecCCCCc--eEEEEEECCCCeEEEEEEEEe-ccC
Confidence 689999999998876555555554332211 111111 123467999999999999987 433
No 44
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}
Probab=46.20 E-value=54 Score=31.28 Aligned_cols=54 Identities=11% Similarity=0.111 Sum_probs=36.2
Q ss_pred EEEEEEEeCCCCCcceEEEEEeeCCCCCCCccc---cccccccc-ccCCCCeEEEEEEec
Q 010408 413 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNK---QLIGFKKV-HVTAGALQSVRLDIH 468 (511)
Q Consensus 413 ~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~k---~L~gF~kv-~L~pGe~~~v~~~l~ 468 (511)
.++++|+|+|+. --.+|..+.+......|.. .+.--=-+ .|+||++++|+|...
T Consensus 45 ~~sl~l~N~~~~--P~LvQsWid~~~~~~~p~~~~~pfivtPPl~rl~pg~~q~lRI~~~ 102 (257)
T 3q48_A 45 EVTLRVSNTSGT--PVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGGAVLRIAYL 102 (257)
T ss_dssp EEEEEEEECSSS--CEEEEEEEESSCCSSCGGGGCCSEEEESSEEEECTTEEEEEEEEEC
T ss_pred EEEEEEEeCCCC--eEEEEEEEEcCCCccCcccccCCEEEcCCEEEECCCCceEEEEEEC
Confidence 588999999986 5899999987443222221 12222223 489999999999654
No 45
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli}
Probab=43.12 E-value=57 Score=30.80 Aligned_cols=52 Identities=10% Similarity=0.011 Sum_probs=34.1
Q ss_pred EEEEEEEeCCCCCcceEEEEEeeCCCCC-CCcccccccccccccCCCCeEEEEEEec
Q 010408 413 GLHVDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLDIH 468 (511)
Q Consensus 413 ~v~v~V~NtG~~~G~evvQlY~~~~~~~-~~P~k~L~gF~kv~L~pGe~~~v~~~l~ 468 (511)
.+++.|+|+|+.+ -.+|..+.+.... ..|..-.=-. .+|+||+.++|+|-..
T Consensus 39 ~~sl~l~N~~~~P--~LvQsWv~~~~~~~~~pfivtPPl--fRlep~~~q~lRIi~~ 91 (239)
T 4djm_A 39 GETLTVINDQDYP--MLVQSEVLSEDQKSPAPFVVTPPL--FRLDGQQSSRLRIVRT 91 (239)
T ss_dssp CEEEEEEECSSSC--EEEEEEEECTTSSSBCSEEEESSE--EEECTTEEEEEEEEEC
T ss_pred EEEEEEEeCCCCc--EEEEEEEEcCCCCccCCEEEcCCe--EEECCCCceEEEEEEC
Confidence 4788999999764 7999999864332 2221111111 1478999999999654
No 46
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=39.68 E-value=48 Score=30.07 Aligned_cols=55 Identities=22% Similarity=0.253 Sum_probs=36.3
Q ss_pred chHHHHHHHHhhCCEEEEEeccCCCCccccCCCCCCCCChhHHHHHHHHHH-----hCCCCEEEEEeCCce
Q 010408 208 QLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAK-----ASRGPVVLVLMCGGP 273 (511)
Q Consensus 208 ~~~~~a~~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~va~-----~~~kpvVvVl~~g~P 273 (511)
....+..+..++||.+|++.=+ .+..+|+.-..+|+.+.. -.+||+.++..+|++
T Consensus 62 ~~~~~~~~~i~~AD~iVi~tP~-----------Y~~s~p~~LK~~iD~~~~~~~~~l~gK~v~~v~tsgg~ 121 (199)
T 4hs4_A 62 APVLTMAQQIATADAVVIVTPE-----------YNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTASPGM 121 (199)
T ss_dssp HHHHHHHHHHHHSSEEEEEECC-----------BTTBCCHHHHHHHHHHTTSSSCTTTTCEEEEEEECSSS
T ss_pred HHHHHHHHHHHhCCEEEEEcCc-----------cCCCcCHHHHHHHHHhcccCCcccCCCEEEEEEeCCCC
Confidence 3456777888999999998721 245678888888888853 134555555544433
No 47
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Probab=38.90 E-value=79 Score=27.45 Aligned_cols=54 Identities=15% Similarity=0.085 Sum_probs=27.1
Q ss_pred EEEEEEEeCCCCCcceEEEEEeeCCCCCCCccc-ccccccc--cccCCCC--eEEEEEEe
Q 010408 413 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNK-QLIGFKK--VHVTAGA--LQSVRLDI 467 (511)
Q Consensus 413 ~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~k-~L~gF~k--v~L~pGe--~~~v~~~l 467 (511)
+|+++++|.|+-....++..=...+.. .-|.. .+..... ..|.||| +.+++|++
T Consensus 70 ~V~~~~tN~~~~~~H~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~i~PG~sgt~t~tft~ 128 (154)
T 2cal_A 70 TVDVTFINTNKGFGHSFDITKKGPPYA-VMPVIDPIVAGTGFSPVPKDGKFGYTDFTWHP 128 (154)
T ss_dssp EEEEEEEECCTTCCCCCEEESCCSCCC-SSCCCCSEEEEBCCCCCCBTTBEEEEEEEECC
T ss_pred EEEEEEEcCCCCeeeEEEEeecCcchh-ccccccccccccccccccCCCCceEEEEEEEE
Confidence 688899998653344544331111111 11110 0111111 1689999 77777776
No 48
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=38.77 E-value=40 Score=30.37 Aligned_cols=55 Identities=11% Similarity=0.051 Sum_probs=40.0
Q ss_pred chHHHHHHHHhhCCEEEEEeccCCCCccccCCCCCCCCChhHHHHHHHHHH---------------hCCCCEEEEEeCCc
Q 010408 208 QLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAK---------------ASRGPVVLVLMCGG 272 (511)
Q Consensus 208 ~~~~~a~~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~va~---------------~~~kpvVvVl~~g~ 272 (511)
.++.+..+..++||.+|++.= --+..+|+.-..+|+.+.. ..+|+++++..+|+
T Consensus 62 ~~~~~~~~~l~~AD~iV~~~P-----------~y~~~~pa~LK~~iD~v~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~ 130 (196)
T 3lcm_A 62 AEMEKYRDLVTWADHLIFIFP-----------IWWSGMPAILKGFIDRVFVADFAYSYKKVGLEGHLQGKSAWIITTHNT 130 (196)
T ss_dssp GGGHHHHHHHHHCSEEEEEEE-----------CBTTBCCHHHHHHHHHHSCBTTTEEECSSSEEESCTTCEEEEEEECSS
T ss_pred HHHHHHHHHHHhCCEEEEECc-----------hhhccccHHHHHHHHHHccCCcceecCCCCcccCCCCCEEEEEEcCCC
Confidence 445677788899999999862 2245678888888888842 23577777777787
Q ss_pred e
Q 010408 273 P 273 (511)
Q Consensus 273 P 273 (511)
|
T Consensus 131 ~ 131 (196)
T 3lcm_A 131 P 131 (196)
T ss_dssp C
T ss_pred c
Confidence 7
No 49
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=38.27 E-value=62 Score=27.23 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=14.3
Q ss_pred cccCCCCeEEEEEEecC
Q 010408 453 VHVTAGALQSVRLDIHV 469 (511)
Q Consensus 453 v~L~pGe~~~v~~~l~~ 469 (511)
+.|.||++.+++|.++.
T Consensus 98 ~~l~pG~~~~~~~~~~~ 114 (140)
T 1qhq_A 98 AMLNAGESGSVTFRTPA 114 (140)
T ss_dssp CCBCTTEEEEEEEECCS
T ss_pred eeeCCCceeEEEEEeCC
Confidence 56899999999998863
No 50
>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A*
Probab=37.88 E-value=41 Score=32.54 Aligned_cols=43 Identities=9% Similarity=0.202 Sum_probs=29.4
Q ss_pred HHHHHHHhCCcceeEeeccCCCCccCccChHHHHHhhhhhcCCCcEEECCCCccc
Q 010408 98 PFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVG 152 (511)
Q Consensus 98 PF~~ai~~g~~~sVM~syn~vng~pa~~s~~ll~~lLR~e~gF~G~VvSD~~~~~ 152 (511)
-|++..++|..-.++++|+.. .-.|=++.|||.+.+.|+.+|.
T Consensus 8 ~lr~~k~~g~~i~~~tayDa~------------sA~l~e~aG~d~ilvGdSl~~~ 50 (275)
T 1o66_A 8 TLQKMKAAGEKIAMLTAYESS------------FAALMDDAGVEMLLVGDSLGMA 50 (275)
T ss_dssp HHHHHHHHTCCEEEEECCSHH------------HHHHHHHTTCCEEEECTTHHHH
T ss_pred HHHHHHhCCCcEEEEeCcCHH------------HHHHHHHcCCCEEEECHHHHHH
Confidence 355566667676777777643 3444568899999998887653
No 51
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*
Probab=37.38 E-value=35 Score=37.34 Aligned_cols=57 Identities=11% Similarity=-0.070 Sum_probs=43.1
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEeeCCCCC--CCccccccccc--ccccCCCCeEEEEEEecC
Q 010408 411 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGN--WSPNKQLIGFK--KVHVTAGALQSVRLDIHV 469 (511)
Q Consensus 411 ~~~v~v~V~NtG~~~G~evvQlY~~~~~~~--~~P~k~L~gF~--kv~L~pGe~~~v~~~l~~ 469 (511)
.+.|++.++|..+.. ..+++++....-. ..+..++..-+ .+.|+|+|+++|.+.|..
T Consensus 488 df~v~v~~~N~s~~~--~~v~~~l~a~~v~YtG~~~~~~~~~~~~~~~l~p~~~~~v~~~i~y 548 (687)
T 2q3z_A 488 DFDVFAHITNNTAEE--YVCRLLLCARTVSYNGILGPECGTKYLLNLTLEPFSEKSVPLCILY 548 (687)
T ss_dssp CEEEEEEEEECSSSC--EEEEEEEEEEEECTTCCEEEEEEEEEEEEEEECTTEEEEEEEEECH
T ss_pred CEEEEEEEEECCCCC--EEEEEEEEEEEEeeCCcccceEeeeeeeEEEECCCceEEEEEEECH
Confidence 599999999998876 6788888764332 56666662223 457999999999999986
No 52
>4g9s_B Inhibitor of G-type lysozyme, goose-type lysozyme; hydrolase inhibitor, hydrolase-hydrolase inhibitor; HET: FLC; 0.95A {Escherichia coli} PDB: 4dy3_A* 4dxz_A* 4dy5_A
Probab=36.66 E-value=74 Score=25.97 Aligned_cols=25 Identities=12% Similarity=0.325 Sum_probs=15.9
Q ss_pred Eec-CeEEEEEEeC--------CCceEEEEEEEc
Q 010408 483 RIP-MGEHSLHIGD--------LKHSISLQANLE 507 (511)
Q Consensus 483 ~~~-~G~y~i~vG~--------ss~~~~~~~~~~ 507 (511)
.|+ .|+|+|.|.- ...+-+|++++|
T Consensus 78 ~LP~sG~Y~I~V~~~r~~ar~~~~~~Y~L~v~i~ 111 (111)
T 4g9s_B 78 SLPASGKYELRVLQTRNDARKNKTKKYNVDIQIK 111 (111)
T ss_dssp ECSSSEEEEEEEECCHHHHHTTCEEEEEEEEEEC
T ss_pred EecCCccEEEEEEeccchhccCCCcCEEEEEEEC
Confidence 454 8999999962 223566666654
No 53
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B
Probab=36.48 E-value=76 Score=29.47 Aligned_cols=51 Identities=12% Similarity=0.143 Sum_probs=34.5
Q ss_pred EEEEEEEeCCCCCcceEEEEEeeCCCCC-CCccccccccccc-ccCCCCeEEEEEEec
Q 010408 413 GLHVDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFKKV-HVTAGALQSVRLDIH 468 (511)
Q Consensus 413 ~v~v~V~NtG~~~G~evvQlY~~~~~~~-~~P~k~L~gF~kv-~L~pGe~~~v~~~l~ 468 (511)
.++++|+|+|+. --.+|..+.+.... ..|. .--==+ +|+||++++|+|...
T Consensus 29 ~~sl~l~N~~~~--p~LvQsWv~~~~~~~~~pf---ivtPPl~rl~p~~~q~lRI~~~ 81 (221)
T 2co7_B 29 GATLSVSNPQNY--PILVQSSVKAADKSSPAPF---LVMPPLFRLEANQQSQLRIVRT 81 (221)
T ss_dssp CEEEEEECCSSS--CEEEEEEEEETTSSSBCSE---EEESSEEEECTTCEEEEEEEEC
T ss_pred EEEEEEEcCCCC--cEEEEEEEecCCCCccCCE---EEeCCEEEECCCCceEEEEEEC
Confidence 478889999976 67999999864332 2221 111112 478999999999654
No 54
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
Probab=34.47 E-value=47 Score=36.30 Aligned_cols=57 Identities=16% Similarity=0.072 Sum_probs=40.4
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEeeCCCCC--CCcccccccc-cccccCCCCeEEEEEEecC
Q 010408 411 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGN--WSPNKQLIGF-KKVHVTAGALQSVRLDIHV 469 (511)
Q Consensus 411 ~~~v~v~V~NtG~~~G~evvQlY~~~~~~~--~~P~k~L~gF-~kv~L~pGe~~~v~~~l~~ 469 (511)
.+.|++.|+|..+.. ..+++++....-. ..+..+++-= ..+.|+|+|++++.+.|..
T Consensus 487 df~v~v~~~N~s~~~--~~v~~~l~a~~v~YtG~~~~~~~~~~~~~~L~p~~~~~v~~~i~y 546 (695)
T 1g0d_A 487 DFDVIVEVKNEGGRD--AHAQLTMLAMAVTYNSLRRGECQRKTISVTVPAHKAHKEVMRLHY 546 (695)
T ss_dssp CEEEEEEEEECSSSC--EEEEEEEEEEEECTTCBCCCCCCEEEEEEEECTTEEEEEEEEECH
T ss_pred CEEEEEEEEECCCCC--EEEEEEEEEEEEeeCCcccCceeEeeEEEEECCCceEEEEEEECH
Confidence 599999999988866 5788887664322 3333333211 2557999999999999986
No 55
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=33.39 E-value=46 Score=29.84 Aligned_cols=38 Identities=18% Similarity=0.129 Sum_probs=27.9
Q ss_pred hHHHHHHHHhhCCEEEEEeccCCCCccccCCCCCCCCChhHHHHHHHHH
Q 010408 209 LIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVA 257 (511)
Q Consensus 209 ~~~~a~~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~va 257 (511)
.+.+..+...+||.+|++.= --+..+|+.-..+|+.+.
T Consensus 84 ~~~~~~~~l~~aD~iv~~~P-----------~y~~~~pa~lK~~iD~~~ 121 (208)
T 2hpv_A 84 RFNELTDQFLSADKVVIANP-----------MWNLNVPTRLKAWVDTIN 121 (208)
T ss_dssp HHHHHHHHHHHCSEEEEEEE-----------CBTTBCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCEEEEEec-----------cccCCCCHHHHHHHHHHh
Confidence 45566777889999999862 223567888888888875
No 56
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=33.11 E-value=85 Score=24.66 Aligned_cols=16 Identities=19% Similarity=0.310 Sum_probs=12.7
Q ss_pred cccCCCCeEEEEEEec
Q 010408 453 VHVTAGALQSVRLDIH 468 (511)
Q Consensus 453 v~L~pGe~~~v~~~l~ 468 (511)
..|.||++.+++|+.+
T Consensus 61 ~~~~pg~~~~~~~t~~ 76 (100)
T 4hci_A 61 VVVESGKEKNITVKPK 76 (100)
T ss_dssp EEECTTCEEEEEECCC
T ss_pred eeecCCcceeEEEecc
Confidence 4589999998888754
No 57
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=32.31 E-value=61 Score=28.91 Aligned_cols=56 Identities=13% Similarity=0.044 Sum_probs=40.3
Q ss_pred chHHHHHHHHhhCCEEEEEeccCCCCccccCCCCCCCCChhHHHHHHHHHH----------hCCCCEEEEEeCCceE
Q 010408 208 QLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAK----------ASRGPVVLVLMCGGPV 274 (511)
Q Consensus 208 ~~~~~a~~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~va~----------~~~kpvVvVl~~g~P~ 274 (511)
.++.+..+....||.+|+..= --++.+|..-..+|+++.. ..+|++++++.+|+|-
T Consensus 40 ~D~~~~~~~l~~aD~iV~~~P-----------~y~~~~pa~lK~~iDrv~~~g~~~~~~~~l~gK~~~~~~t~g~~~ 105 (177)
T 3ha2_A 40 FNVEQEQSLLLQNDRIILEFP-----------LYWYSAPALLKQWMDTVMTTKFATGHQYALEGKELGIVVSTGDNG 105 (177)
T ss_dssp CCHHHHHHHHHTCSEEEEEEE-----------CBTTBCCHHHHHHHHHHSCHHHHSTTTCTTTTCEEEEEEEESSCG
T ss_pred ccHHHHHHHHHhCCEEEEECC-----------hhhccCCHHHHHHHHHHhhcccccCCCcCCCCCEEEEEEeCCCCh
Confidence 456777888999999999862 2245678877888887632 2467777777778774
No 58
>2xwx_A GBPA, glcnac-binding protein A; chitin-binding protein; 1.80A {Vibrio cholerae}
Probab=31.92 E-value=1.1e+02 Score=31.15 Aligned_cols=61 Identities=16% Similarity=0.227 Sum_probs=46.4
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEeeCCCCCCCcccccccccccccCCCCeEEEEEEecCCCCeeEEeCCCCEEecCeEEE
Q 010408 411 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHS 490 (511)
Q Consensus 411 ~~~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv~L~pGe~~~v~~~l~~~~~ls~~d~~~~~~~~~G~y~ 490 (511)
.+++.++|+=+|+ -.|.++|-+.. ++.+++++..|.-+..+.++++|.. +++|.|.
T Consensus 312 ~~~l~f~~~~~~~----~~v~~~v~d~~------~~~~~~~~~~v~~~~~~~~tl~ls~--------------~~aGhh~ 367 (391)
T 2xwx_A 312 PIQLDLTLEAQGE----MSAELTVYNHH------QKPLASWSQAMTDGELKSITLELSE--------------AKAGHHM 367 (391)
T ss_dssp CCEEEEEEEEESS----EEEEEEEECTT------SCEEEEEEEEECTTCEEEEEEECSC--------------CCSEEEE
T ss_pred cEEEEEEEEecCc----eEEEEEEEcCC------CCccceeeEEEcCCCcceEEEEccC--------------CCCccEE
Confidence 4667777765555 44777777653 4788999999999999999999985 2789998
Q ss_pred EEEeC
Q 010408 491 LHIGD 495 (511)
Q Consensus 491 i~vG~ 495 (511)
|.|-.
T Consensus 368 lvv~~ 372 (391)
T 2xwx_A 368 LVSRI 372 (391)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87764
No 59
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=31.85 E-value=51 Score=30.07 Aligned_cols=55 Identities=15% Similarity=0.135 Sum_probs=38.0
Q ss_pred hHHHHHHHHhhCCEEEEEeccCCCCccccCCCCCCCCChhHHHHHHHHHH---------------hCCCCEEEEEeCCce
Q 010408 209 LIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAK---------------ASRGPVVLVLMCGGP 273 (511)
Q Consensus 209 ~~~~a~~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~va~---------------~~~kpvVvVl~~g~P 273 (511)
...+..+....||.+|++.= --+..+|+.-..+|+.+.. ..+|+++++..+|+|
T Consensus 82 ~~~~~~~~~~~aD~iv~~~P-----------~y~~~~p~~lK~~iD~~~~~~~~~~~~~~g~~g~l~gK~~~~i~t~g~~ 150 (211)
T 3p0r_A 82 VADKYLNQFLEADKVVFGFP-----------LWNLTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKIALLNARGGV 150 (211)
T ss_dssp HHHHHHHHHHHCSEEEEEEE-----------CBTTBCCHHHHHHHHHHCCBTTTEECCTTCCEESCTTCEEEEEEEESSC
T ss_pred HHHHHHHHHHhCCEEEEEcC-----------hhcccCCHHHHHHHHHHhccCceeccCCCCCccCCCCCEEEEEEeCCCC
Confidence 34566777899999999872 1245678888888888742 135666777767777
Q ss_pred E
Q 010408 274 V 274 (511)
Q Consensus 274 ~ 274 (511)
+
T Consensus 151 ~ 151 (211)
T 3p0r_A 151 Y 151 (211)
T ss_dssp C
T ss_pred C
Confidence 4
No 60
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=31.50 E-value=66 Score=28.33 Aligned_cols=52 Identities=13% Similarity=0.190 Sum_probs=34.5
Q ss_pred HHHHHHHhhCCEEEEEeccCCCCccccCCCCCCCCChhHHHHHHHHHH---------------hCCCCEEEEEeCCce
Q 010408 211 GAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAK---------------ASRGPVVLVLMCGGP 273 (511)
Q Consensus 211 ~~a~~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~va~---------------~~~kpvVvVl~~g~P 273 (511)
.+..+...+||.+|++.- --+..+|+.-..+|+.+.. ..+|+++++..+|++
T Consensus 78 ~~~~~~l~~aD~iv~~~P-----------~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~ 144 (201)
T 1t5b_A 78 DELIAELKAHDVIVIAAP-----------MYNFNIPTQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRGGI 144 (201)
T ss_dssp HHHHHHHHHCSEEEEECC-----------CBTTBCCHHHHHHHHHHCCBTTTEEEETTEEEESSCSCEEEEEEECSSC
T ss_pred HHHHHHHHhCCEEEEEeC-----------cccCcCCHHHHHHHHHheeCCCceecCCCCCccCCCCCeEEEEEecCCC
Confidence 445667889999999762 1234578877888888852 135666666666655
No 61
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=31.37 E-value=59 Score=35.92 Aligned_cols=55 Identities=20% Similarity=0.045 Sum_probs=40.7
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEeeCCCCC-CCcccccccccccccCCCCeEEEEEEecC
Q 010408 411 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLDIHV 469 (511)
Q Consensus 411 ~~~v~v~V~NtG~~~G~evvQlY~~~~~~~-~~P~k~L~gF~kv~L~pGe~~~v~~~l~~ 469 (511)
.+.+.++|.|..+...+-.|+|-..++... ..+.. -+++.|+||++++|.|.|.+
T Consensus 169 ~~~i~~~V~N~~~~~~~v~v~l~~~~~~~~~~~~~~----~~~~~v~a~~~~~v~f~i~~ 224 (767)
T 4fxk_B 169 QLELRPVLYNYLDKNLTVSVHVSPVEGLCLAGGGGL----AQQVLVPAGSARPVAFSVVP 224 (767)
T ss_dssp EEEECCEEEECSSSCEEEEEEECCCTTEECSSSSCC----CEEEEECSSCEEECCEEEEE
T ss_pred EEEEEEEEEECCCCCEEEEEEEEecCCeEEecCCce----eEEEEEcCCCeEEEEEEEEE
Confidence 789999999999988887788865554321 11110 24567999999999999987
No 62
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*
Probab=30.09 E-value=59 Score=35.59 Aligned_cols=57 Identities=11% Similarity=-0.040 Sum_probs=41.5
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEeeCCCCC--CCcccccccc-cccccCCCCeEEEEEEecC
Q 010408 411 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGN--WSPNKQLIGF-KKVHVTAGALQSVRLDIHV 469 (511)
Q Consensus 411 ~~~v~v~V~NtG~~~G~evvQlY~~~~~~~--~~P~k~L~gF-~kv~L~pGe~~~v~~~l~~ 469 (511)
.+.|++.++|..+.. ..|++++....-. ..+..+++-= ..+.|+|+|++++.+.|..
T Consensus 497 df~v~l~~~N~s~~~--~~v~~~l~a~~v~YtG~~~~~~~~~~~~v~L~p~~~~~i~~~i~y 556 (692)
T 1vjj_A 497 EVNLVLLLKNLSRDT--KTVTVNMTAWTIIYNGTLVHEVWKDSATMSLDPEEEAEHPIKISY 556 (692)
T ss_dssp CEEEEEEEEECSSSC--EEEEEEEEEEEECTTCCEEEEEEEEEEEEEECTTCEEEEEEEECH
T ss_pred CEEEEEEEEECCCCC--EEEEEEEEEEEEeeCCccccceEEeeEEEEECCCceEEEEEEECH
Confidence 599999999988865 6788887764322 4555454321 2456999999999999986
No 63
>2lv4_A Putative outer membrane or exported protein; antivirulence, adhesion, protein binding; NMR {Salmonella enterica subsp}
Probab=29.60 E-value=1.2e+02 Score=25.73 Aligned_cols=66 Identities=12% Similarity=0.148 Sum_probs=42.5
Q ss_pred CcccccccccccccCCCCeEEEEEEecCCCC------------eeEEeCCCCE-------EecCeEEEE---EEeCCCce
Q 010408 442 SPNKQLIGFKKVHVTAGALQSVRLDIHVCKH------------LSVVDKFGIR-------RIPMGEHSL---HIGDLKHS 499 (511)
Q Consensus 442 ~P~k~L~gF~kv~L~pGe~~~v~~~l~~~~~------------ls~~d~~~~~-------~~~~G~y~i---~vG~ss~~ 499 (511)
.|--.+..-.|--|.||||++|++-+.- -+ ....+..|.| -.-||+|.= +-|.|+..
T Consensus 47 SpDLtvisiDk~vL~PGESA~it~IvKD-id~nPIn~v~i~~~~~~~~~~g~Wd~g~~Kkg~~PGeY~q~iTY~G~s~~~ 125 (146)
T 2lv4_A 47 SPDLTVMSIDKSVLSPGESATITTIVKD-IDGNPVNEVHINKTVARENLKGLWDYGPLKKENVPGKYTQVITYRGHSNER 125 (146)
T ss_dssp CGGGCEEECCCCCBCTTCEEEEEEECBB-TTSCBCCCCCCBCCEECSCSSSEEEECCCEECSSSSEEEEEEEEETTCCCE
T ss_pred CCCcEEEecCccccCCCcceEEEEEEEe-CCCCcccceeeeeeeeccccccceeecceecCCCCcceEEEEEEcCCCCce
Confidence 3555677788999999999999987642 11 1111122344 245899965 45678887
Q ss_pred EEEEEEEcc
Q 010408 500 ISLQANLEG 508 (511)
Q Consensus 500 ~~~~~~~~~ 508 (511)
|.++..--|
T Consensus 126 i~l~yky~g 134 (146)
T 2lv4_A 126 IDISFKYAM 134 (146)
T ss_dssp EEEEEECST
T ss_pred EEEEeeeee
Confidence 777665433
No 64
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=29.58 E-value=71 Score=27.70 Aligned_cols=54 Identities=9% Similarity=0.072 Sum_probs=33.9
Q ss_pred chHHHHHHHHhhCCEEEEEeccCCCCccccCCCCCCCCChhHHHHHHHHHH-------------hCCCCEEEEEeCCc
Q 010408 208 QLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAK-------------ASRGPVVLVLMCGG 272 (511)
Q Consensus 208 ~~~~~a~~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~va~-------------~~~kpvVvVl~~g~ 272 (511)
.++.+..+...+||.+|++.-. -+..+|..-..+|+.+.. ..+|+++++...|+
T Consensus 60 ~~~~~~~~~l~~aD~ii~~~P~-----------y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~ 126 (184)
T 1rli_A 60 DDYDSIIERILQCHILIFATPI-----------YWFGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVGGD 126 (184)
T ss_dssp -CHHHHHHHHHTCSEEEEEEEC-----------BTTBCCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEESS
T ss_pred CCHHHHHHHHHhCCEEEEEeCc-----------cccCCcHHHHHHHHHhHHhccCccccccccccCCCeEEEEEeCCC
Confidence 3456667778899999998632 234567777777777642 23566665555554
No 65
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=29.57 E-value=87 Score=27.93 Aligned_cols=40 Identities=18% Similarity=0.260 Sum_probs=29.8
Q ss_pred cchHHHHHHHHhhCCEEEEEeccCCCCccccCCCCCCCCChhHHHHHHHHH
Q 010408 207 NQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVA 257 (511)
Q Consensus 207 ~~~~~~a~~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~va 257 (511)
...+.+..+...+||.+|++.= --+...|+.-..+|+.+.
T Consensus 55 ~~~~~~~~~~i~~AD~iV~~sP-----------~y~~~~p~~lK~~iD~~~ 94 (192)
T 3fvw_A 55 HPEVAHAREEVQEADAIWIFSP-----------VYNYAIPGPVKNLLDWLS 94 (192)
T ss_dssp CHHHHHHHHHHHHCSEEEEECC-----------CBTTBCCHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhCCEEEEECc-----------ccccCCCHHHHHHHHHhh
Confidence 3456777888999999999762 224567888888888886
No 66
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=29.16 E-value=66 Score=25.86 Aligned_cols=40 Identities=13% Similarity=0.324 Sum_probs=25.5
Q ss_pred EEEEEEEeCCCCCcceEEEEEeeCCCCCCCcccccccccccccCCCCeEEEEEEec
Q 010408 413 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIH 468 (511)
Q Consensus 413 ~v~v~V~NtG~~~G~evvQlY~~~~~~~~~P~k~L~gF~kv~L~pGe~~~v~~~l~ 468 (511)
+|++.++|.+.. -+-.. +. .+ |+ +..+.|||+.+++|..+
T Consensus 47 ~V~~~~~n~d~~--~H~~~--i~----------~~-~~-~~~i~pG~~~~~~f~~~ 86 (112)
T 1iby_A 47 AVKVVVENKSPI--SEGFS--ID----------AF-GV-QEVIKAGETKTISFTAD 86 (112)
T ss_dssp EEEEEEEECSSS--CEEEE--EG----------GG-TE-EEEECTTCEEEEEEECC
T ss_pred EEEEEEEECCCC--eEEEE--Ec----------CC-Cc-eeEeCCCCEEEEEEECC
Confidence 577888998864 11111 11 11 22 56799999999999764
No 67
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=28.76 E-value=1.5e+02 Score=33.34 Aligned_cols=57 Identities=11% Similarity=0.007 Sum_probs=40.0
Q ss_pred eEEEEEEEEeCCC-CCcceEEEEEeeCCCCC-CCcccccccccccccCCCCeEEEEEEecC
Q 010408 411 SLGLHVDIKNTGD-MAGTHTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLDIHV 469 (511)
Q Consensus 411 ~~~v~v~V~NtG~-~~G~evvQlY~~~~~~~-~~P~k~L~gF~kv~L~pGe~~~v~~~l~~ 469 (511)
.+.+.++|.|..+ .+++-.|+|-..++... ..+. ...=+++.|+||++++|.|.|.+
T Consensus 96 ~~~i~~~v~N~~~~~~~~v~v~l~~~~~~~~~~~~~--~~~~~~v~l~~~~~~~v~f~i~~ 154 (915)
T 2hr0_B 96 QVEIRAVLYNYRQNQELKVRVELLHNPAFCSLATTK--RRHQQTVTIPPKSSLSVPYVIVP 154 (915)
T ss_dssp CEEEEEEEEECCSSCCEEEEEEECCCTTEECSCCSS--SCEEEEEEECTTEEEEEEEEEEE
T ss_pred EEEEEEEEEcCCCCeeEEEEEEEecCCceEeecCCC--CcceeEEEECCCCeEEEEEEEEE
Confidence 6899999999999 88876777655443211 1110 11125678999999999999987
No 68
>3gfu_C Chaperone protein FAEE; immunoglobulin like fold, chaperone, fimbrium, immunoglobulin domain, periplasm, plasmid, cell adhesion; 1.99A {Escherichia coli} PDB: 3gew_B 3f65_A 3f6i_A 3f6l_A
Probab=28.40 E-value=1.5e+02 Score=27.62 Aligned_cols=52 Identities=12% Similarity=0.112 Sum_probs=32.7
Q ss_pred EEEEEEEeCCCCCcceEEEEEeeCCCCC--CCccccccccccc-ccCCCCeEEEEEEec
Q 010408 413 GLHVDIKNTGDMAGTHTLLVFAKPPAGN--WSPNKQLIGFKKV-HVTAGALQSVRLDIH 468 (511)
Q Consensus 413 ~v~v~V~NtG~~~G~evvQlY~~~~~~~--~~P~k~L~gF~kv-~L~pGe~~~v~~~l~ 468 (511)
.+++.|+|+|+.. --.+|..+.+.... ..|. .--==+ +|+||+.++|+|-..
T Consensus 17 ~~sl~l~N~~~~~-p~LvQsWid~~~~~~~~~pf---ivtPPlfRlep~~~q~lRIi~~ 71 (224)
T 3gfu_C 17 ALTITVTNNDKER-TFGGQAWVDNIVEKDTRPTF---VVTPSFFKVKPNGQQTLRIIMA 71 (224)
T ss_dssp CEEEEEEECCSSC-CEEEEEEEEESSCCSCSCSE---EEESSEEEECTTCEEEEEEEEC
T ss_pred eEEEEEEeCCCCc-cEEEEEEEecCCCCcccCCE---EEcCCeEEECCCCceEEEEEEC
Confidence 4788999999753 35799999863221 1111 101112 489999999999654
No 69
>1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8
Probab=28.13 E-value=27 Score=33.96 Aligned_cols=42 Identities=12% Similarity=0.214 Sum_probs=29.6
Q ss_pred HHHHHHHhCCcceeEeeccCCCCccCccChHHHHHhhhhhcCCCcEEECCCCcc
Q 010408 98 PFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSV 151 (511)
Q Consensus 98 PF~~ai~~g~~~sVM~syn~vng~pa~~s~~ll~~lLR~e~gF~G~VvSD~~~~ 151 (511)
-|++..++|..-.++++|+.. .-.|=++.|||.+.+.|+.+|
T Consensus 25 ~lr~~k~~g~~i~~~tayDa~------------sA~l~e~aG~d~ilvGdSl~~ 66 (281)
T 1oy0_A 25 HLQRWKADGHKWAMLTAYDYS------------TARIFDEAGIPVLLVGDSAAN 66 (281)
T ss_dssp HHHHHHHHTCCEEEEECCSHH------------HHHHHHTTTCCEEEECTTHHH
T ss_pred HHHHHHhCCCcEEEEeCcCHH------------HHHHHHHcCCCEEEECHHHHH
Confidence 355555667677777887643 344556899999999998765
No 70
>1g43_A Scaffolding protein; beta-sandwich, structural protein; 2.20A {Clostridium cellulolyticum} SCOP: b.2.2.2
Probab=28.09 E-value=24 Score=31.28 Aligned_cols=34 Identities=12% Similarity=0.108 Sum_probs=28.0
Q ss_pred ccccc--cccCCCCeEEEEEEecCCCCeeEEeCCCCE
Q 010408 448 IGFKK--VHVTAGALQSVRLDIHVCKHLSVVDKFGIR 482 (511)
Q Consensus 448 ~gF~k--v~L~pGe~~~v~~~l~~~~~ls~~d~~~~~ 482 (511)
.+|.. -.|.||++..|.|.|.. .+.+.||...+|
T Consensus 97 I~F~~~ag~l~pg~s~eiq~ri~~-~dws~~dqsNDy 132 (160)
T 1g43_A 97 VALNSDAGSLPAGGSIEIQTRFAR-NDWSNFDQSNDW 132 (160)
T ss_dssp EEECTTSCEECTTCEEEEEEEEEE-TTCCCEEGGGCT
T ss_pred EEecCCcceECCCCcEEEEEEEec-CCCCcccccCCc
Confidence 35766 67999999999999997 888899976554
No 71
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Probab=27.62 E-value=73 Score=29.40 Aligned_cols=38 Identities=13% Similarity=0.297 Sum_probs=27.7
Q ss_pred HHHHHHHHhhCCEEEEEeccCCCCccccCCCCCCCCChhHHHHHHHHHH
Q 010408 210 IGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAK 258 (511)
Q Consensus 210 ~~~a~~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~va~ 258 (511)
..+..+....||.+|++.=. -+..+|..-..+|+.+..
T Consensus 85 ~~~l~~~~~~aD~iv~~~P~-----------y~~~~p~~lK~~iD~~~~ 122 (223)
T 3u7i_A 85 MSEILQQFKSANTYVIVLPL-----------HNFNIPSKLKDYMDNIMI 122 (223)
T ss_dssp HHHHHHHHHHCSEEEEEEEC-----------BTTBCCHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCEEEEEcCh-----------hhccCCHHHHHHHHHHhh
Confidence 45667778999999998732 245678888888888753
No 72
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A
Probab=27.30 E-value=66 Score=35.42 Aligned_cols=56 Identities=11% Similarity=0.142 Sum_probs=41.4
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEeeCCCCC--CCccccccccc--ccccCCCCeEEEEEEecC
Q 010408 411 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGN--WSPNKQLIGFK--KVHVTAGALQSVRLDIHV 469 (511)
Q Consensus 411 ~~~v~v~V~NtG~~~G~evvQlY~~~~~~~--~~P~k~L~gF~--kv~L~pGe~~~v~~~l~~ 469 (511)
.+.|++.|+|..+.. ..+++++....-. ..+..+++ .+ .+.|+|+|++++.+.|..
T Consensus 532 df~v~l~~~N~s~~~--~~v~~~l~a~~v~YtG~~~~~~~-~~~~~~~L~p~~~~~i~~~i~y 591 (731)
T 1ex0_A 532 DFKLSITFRNNSHNR--YTITAYLSANITFYTGVPKAEFK-KETFDVTLEPLSFKKEAVLIQA 591 (731)
T ss_dssp CEEEEEEEEECSSSC--EEEEEEEEEEEECTTSCEEEEEE-EEEEEEEECTTEEEEEEEEECH
T ss_pred CEEEEEEEEECCCCC--EEEEEEEEEEEEeeCCcccccee-EeeEEEEECCCceEEEEEEECH
Confidence 599999999988876 6788887664322 44444443 23 456999999999999986
No 73
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=26.97 E-value=61 Score=28.72 Aligned_cols=54 Identities=15% Similarity=0.179 Sum_probs=33.9
Q ss_pred chHHHHHHHHhhCCEEEEEeccCCCCccccCCCCCCCCChhHHHHHHHHHH-----hCCCCEEEEEeCCc
Q 010408 208 QLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAK-----ASRGPVVLVLMCGG 272 (511)
Q Consensus 208 ~~~~~a~~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~va~-----~~~kpvVvVl~~g~ 272 (511)
.++.+..+...+||.+|++.-. -+..+|+.-..+|+.+.. ..+||++++..+|+
T Consensus 61 ~~~~~~~~~l~~aD~ii~~sP~-----------y~~~~p~~lK~~iD~~~~~~~~~l~gK~~~~~~t~gg 119 (193)
T 1rtt_A 61 PAVERFREQIRAADALLFATPE-----------YNYSMAGVLKNAIDWASRPPEQPFSGKPAAILGASAG 119 (193)
T ss_dssp HHHHHHHHHHHHCSEEEEECCE-----------ETTEECHHHHHHHHHHTCSSSCTTTTCEEEEEEECSS
T ss_pred HHHHHHHHHHHhCCEEEEEccc-----------cccCcCHHHHHHHHHhccccCcccCCCeEEEEEeCCC
Confidence 4556677788999999997621 123467777778888752 23455555544433
No 74
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=26.87 E-value=64 Score=29.16 Aligned_cols=56 Identities=14% Similarity=0.117 Sum_probs=39.4
Q ss_pred chHHHHHHHHhhCCEEEEEeccCCCCccccCCCCCCCCChhHHHHHHHHHH-----------hCCCCEEEEEeCCceE
Q 010408 208 QLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAK-----------ASRGPVVLVLMCGGPV 274 (511)
Q Consensus 208 ~~~~~a~~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~va~-----------~~~kpvVvVl~~g~P~ 274 (511)
.++.+..+....||.+|+..= --+..+|..-..+|+.+.. ..+|+++++..+|+|-
T Consensus 47 ~dv~~~~~~l~~AD~iv~~~P-----------~y~~~~pa~lK~~iDrv~~~g~~y~~~g~~l~gK~~~~~~t~G~~~ 113 (192)
T 3f2v_A 47 IDVAAEQKLIETHDSLVWQFP-----------IYWFNCPPLLKQWLDEVLTYGWAYGSKGKALKGRKIALAVSLGAPA 113 (192)
T ss_dssp CCHHHHHHHHHTSSSEEEEEE-----------CBTTBCCHHHHHHHHHHSCBTTTBSSSCCSSTTCEEEEEEEESSCG
T ss_pred hhHHHHHHHHHhCCEEEEEcC-----------hhhcCCCHHHHHHHHHHhhcCccccCCCCCCCCCEEEEEEeCCCCh
Confidence 456777888999999999762 2245678877888888732 2357777777777773
No 75
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=26.84 E-value=1.3e+02 Score=26.82 Aligned_cols=40 Identities=23% Similarity=0.310 Sum_probs=29.4
Q ss_pred chHHHHHHHHhhCCEEEEEeccCCCCccccCCCCCCCCChhHHHHHHHHHH
Q 010408 208 QLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAK 258 (511)
Q Consensus 208 ~~~~~a~~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~va~ 258 (511)
....+..+..++||.+|++.=+ .+..+|+.-..+|+.+..
T Consensus 61 ~~~~~l~~~i~~AD~iv~~sP~-----------y~~~~~~~lK~~iD~~~~ 100 (193)
T 3svl_A 61 ATVEALAEQIRQADGVVIVTPE-----------YNYSVPGGLKNAIDWLSR 100 (193)
T ss_dssp HHHHHHHHHHHHSSEEEEEECC-----------BTTBCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCEEEEEecc-----------cCCCCCHHHHHHHHHHhh
Confidence 4556777889999999998621 235578888888888763
No 76
>4b9f_A Cellulosomal-scaffolding protein A; sugar binding protein, cellulosome; 1.19A {Clostridium thermocellum atcc 27405} PDB: 1nbc_A
Probab=26.64 E-value=36 Score=29.88 Aligned_cols=35 Identities=14% Similarity=0.057 Sum_probs=29.2
Q ss_pred ccccccccCCCCeEEEEEEecCCCCeeEEeCCCCEE
Q 010408 448 IGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRR 483 (511)
Q Consensus 448 ~gF~kv~L~pGe~~~v~~~l~~~~~ls~~d~~~~~~ 483 (511)
.+|.--.|.||++.+|.|.|.. .+.+.||....|-
T Consensus 94 I~Ft~g~l~pg~~~eiQ~ri~~-~~~s~~d~snDyS 128 (152)
T 4b9f_A 94 ISFTGGTLEPGAHVQIQGRFAK-NDWSNYTQSNDYS 128 (152)
T ss_dssp EEESSCEECTTCEEEEEEEEEE-TTCCCEESTTCTT
T ss_pred EEccCceEcCCCcEEEEEEEEC-CCCcceeEcCCcC
Confidence 3577778999999999999998 8999999876553
No 77
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=26.50 E-value=88 Score=29.74 Aligned_cols=55 Identities=22% Similarity=0.194 Sum_probs=39.2
Q ss_pred chHHHHHHHHhhCCEEEEEeccCCCCccccCCCCCCCCChhHHHHHHHHHH---------------hCCCCEEEEEeCCc
Q 010408 208 QLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAK---------------ASRGPVVLVLMCGG 272 (511)
Q Consensus 208 ~~~~~a~~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~va~---------------~~~kpvVvVl~~g~ 272 (511)
.++.+..+....||.+|++.=. -+..+|..-..+|+.+.. ..+|++++++.+|+
T Consensus 82 dd~~~~~~~l~~AD~IV~~~P~-----------y~~s~Pa~LK~~iDrv~~~g~~f~~~~~~~~g~l~gK~~~~i~t~Gg 150 (273)
T 1d4a_A 82 PDIVAEQKKLEAADLVIFQFPL-----------QWFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTGG 150 (273)
T ss_dssp HHHHHHHHHHHHCSEEEEEEEC-----------BTTBCCHHHHHHHHHHSCBTTTBCTTSCGGGSTTTTCEEEEEEECSS
T ss_pred HHHHHHHHHHHhCCEEEEECch-----------hhccCCHHHHHHHHHHHhcCcccccCCCCCccccCCCEEEEEEeCCC
Confidence 3556667778999999998732 235678877788888742 13678888888887
Q ss_pred e
Q 010408 273 P 273 (511)
Q Consensus 273 P 273 (511)
|
T Consensus 151 ~ 151 (273)
T 1d4a_A 151 S 151 (273)
T ss_dssp C
T ss_pred C
Confidence 7
No 78
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=24.93 E-value=1.7e+02 Score=26.72 Aligned_cols=52 Identities=8% Similarity=0.032 Sum_probs=33.7
Q ss_pred EEEEEEEeCCCCCcceEEEEEeeCCCCC-CCcccccccccccccCCCCeEEEEEEe
Q 010408 413 GLHVDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLDI 467 (511)
Q Consensus 413 ~v~v~V~NtG~~~G~evvQlY~~~~~~~-~~P~k~L~gF~kv~L~pGe~~~v~~~l 467 (511)
.++++|+|+|+. ---.+|..+.+.... ..|..-+=-. ..|+||++++|+|..
T Consensus 17 ~~sl~l~N~~~~-~p~LvQsWi~~~~~~~~~pfivtPPl--~rl~p~~~q~lRI~~ 69 (205)
T 1klf_A 17 QVQLAVTNNDEN-STYLIQSWVENADGVKDGRFIVTPPL--FAMKGKKENTLRILD 69 (205)
T ss_dssp EEEEEEEECCSS-CCEEEEEEEEETTSCCCSSEEEESSE--EEECSSEEEEEEEEE
T ss_pred EEEEEEEcCCCC-CcEEEEEEEecCCCCccCCEEEcCCe--EEECCCCceEEEEEe
Confidence 578999999943 146899999864332 2221111111 147899999999977
No 79
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=24.77 E-value=1.8e+02 Score=34.34 Aligned_cols=62 Identities=16% Similarity=0.129 Sum_probs=42.4
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEeeCCCCC--CCcccccccccccccCCCCeEEEEEEecCCCCe
Q 010408 411 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGN--WSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHL 473 (511)
Q Consensus 411 ~~~v~v~V~NtG~~~G~evvQlY~~~~~~~--~~P~k~L~gF~kv~L~pGe~~~v~~~l~~~~~l 473 (511)
.+.+.++|.|..+.+.+-.|+|...++.-. ..+.+....=+++.|++|++++|.|.|.+ ..+
T Consensus 681 ~~~l~~~v~N~~~~~~~v~v~l~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~v~f~i~~-~~~ 744 (1325)
T 2pn5_A 681 AVVLQFTLFNNLGAEYIADVTLYNVANQTEFVGRPNTDLSYTKSVSVPPKVGVPISFLIKA-RKL 744 (1325)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEECGGGCEEETTSCTTCCEEEEEEEECTTCCEEEEEEEEE-CSS
T ss_pred EEEEEEEEEeCCCCcEEEEEEEeecCCceEEeccCCCCCcceEEEEECCCCeEEEEEEEEE-ccc
Confidence 689999999999999887787765432110 11111111124578999999999999987 544
No 80
>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1
Probab=24.70 E-value=1.2e+02 Score=27.62 Aligned_cols=51 Identities=8% Similarity=0.094 Sum_probs=32.7
Q ss_pred EEEEEEEeCCCCCcceEEEEEeeCCCCC-CCcccccccccccccCCCCeEEEEEE
Q 010408 413 GLHVDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLD 466 (511)
Q Consensus 413 ~v~v~V~NtG~~~G~evvQlY~~~~~~~-~~P~k~L~gF~kv~L~pGe~~~v~~~ 466 (511)
.++++|+|+|+- ---.+|..+.+.... ..|..-+=-. ..|+||++++|+|.
T Consensus 17 ~~sl~l~N~~~~-~p~LvQsWv~~~~~~~~~pfivtPPl--~rl~p~~~q~lRI~ 68 (206)
T 1l4i_A 17 QVQLAVTNNDDK-SSYLIQSWIENAEGKKDARFVITPPL--FSMQGKKENTLRII 68 (206)
T ss_dssp EEEEEEEECCTT-CEEEEEEEEEETTSCBCSSEEEESSE--EEEESSEEEEEEEE
T ss_pred EEEEEEEeCCCC-ccEEEEEEEecCCCCccCCEEEcCCe--EEECCCCceEEEEE
Confidence 578999999962 257899999864221 2221111111 14789999999997
No 81
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=24.57 E-value=1e+02 Score=28.47 Aligned_cols=55 Identities=20% Similarity=0.230 Sum_probs=37.2
Q ss_pred chHHHHHHHHhhCCEEEEEeccCCCCccccCCCCCCCCChhHHHHHHHHHH---------------hCCCCEEEEEeCCc
Q 010408 208 QLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAK---------------ASRGPVVLVLMCGG 272 (511)
Q Consensus 208 ~~~~~a~~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~va~---------------~~~kpvVvVl~~g~ 272 (511)
.++.+..+....||.+|+..=. -+..+|..-..+|+.+.. ..+|++++++.+|+
T Consensus 81 dd~~~~~~~l~~aD~iv~~~P~-----------y~~~~p~~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~~~T~g~ 149 (228)
T 3tem_A 81 SDITDEQKKVREADLVIFQFPL-----------YWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGG 149 (228)
T ss_dssp HHHHHHHHHHHHCSEEEEEEEC-----------BTTBCCHHHHHHHHHHSCBTTTBCSSCCGGGCTTTTCEEEEEEECSS
T ss_pred HHHHHHHHHHHhCCEEEEECCh-----------hhcccCHHHHHHHHHHhhcCcccccCCCCCCCCCCCCEEEEEEeCCC
Confidence 3455667778999999998632 235567777778877631 23577777777776
Q ss_pred e
Q 010408 273 P 273 (511)
Q Consensus 273 P 273 (511)
|
T Consensus 150 ~ 150 (228)
T 3tem_A 150 T 150 (228)
T ss_dssp C
T ss_pred C
Confidence 6
No 82
>3zqx_A Cellulose 1,4-beta-cellobiosidase; hydrolase, cellulose binding protein; 1.04A {Clostridium thermocellum} PDB: 2ylk_A
Probab=24.27 E-value=20 Score=31.41 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=28.0
Q ss_pred ccccccccCCCC-eEEEEEEecCCCCeeEEeCCCCEE
Q 010408 448 IGFKKVHVTAGA-LQSVRLDIHVCKHLSVVDKFGIRR 483 (511)
Q Consensus 448 ~gF~kv~L~pGe-~~~v~~~l~~~~~ls~~d~~~~~~ 483 (511)
.+|....|.||+ +..|.|.|.. .+.+-||....|-
T Consensus 81 I~f~~g~l~pg~~s~eiQ~Ri~~-~dws~~dqsnDyS 116 (146)
T 3zqx_A 81 LEFKDVKLPAGGQTGEIQFVIRY-ADWSFHDQSNDYS 116 (146)
T ss_dssp EEECSCEECTTCBCCCEEEEEEE-TTCCCEEGGGCTT
T ss_pred EEeCCcEEcCCCceEEEEEEEEc-CCCccccccCCcc
Confidence 357777899984 7899999998 8898999866553
No 83
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=23.41 E-value=1.6e+02 Score=26.49 Aligned_cols=38 Identities=16% Similarity=-0.016 Sum_probs=28.7
Q ss_pred hHHHHHHHHhhCCEEEEEeccCCCCccccCCCCCCCCChhHHHHHHHHH
Q 010408 209 LIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVA 257 (511)
Q Consensus 209 ~~~~a~~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~va 257 (511)
++.+..+...+||.+|++.= --+..+|..-..+|+.+.
T Consensus 60 d~~~~~~~l~~AD~iV~~~P-----------~y~~s~pa~LK~~iDrv~ 97 (204)
T 2amj_A 60 DVKAEVQNFLWADVVIWQMP-----------GWWMGAPWTVKKYIDDVF 97 (204)
T ss_dssp CHHHHHHHHHHCSEEEEEEE-----------CBTTBCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHhCCEEEEECC-----------ccccCCCHHHHHHHHHHh
Confidence 46777888999999999872 224567888788888764
No 84
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=23.17 E-value=83 Score=28.32 Aligned_cols=53 Identities=9% Similarity=0.089 Sum_probs=35.1
Q ss_pred cchHHHHHHHHhhCCEEEEEeccCCCCccccCCCCCCCCChhHHHHHHHHHH--hCCCCEEEEEeC
Q 010408 207 NQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAK--ASRGPVVLVLMC 270 (511)
Q Consensus 207 ~~~~~~a~~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~va~--~~~kpvVvVl~~ 270 (511)
...+.+..+.+.+||.+|++.=+ .+..+|+.-..+|+.+.. ..+||++++..+
T Consensus 73 ~~~~~~~~~~i~~AD~ivi~sP~-----------Y~~~~~~~lK~~iD~~~~~~l~gK~~~~v~t~ 127 (191)
T 3k1y_A 73 TTKLEEITSALSASDGLVVATPV-----------FKASYTGLFKMFFDILDTDALTGMPTIIAATA 127 (191)
T ss_dssp CHHHHHHHHHHHHCSEEEEEEEC-----------BTTBSCHHHHHHHHHSCTTTTTTCEEEEEEEE
T ss_pred CHHHHHHHHHHHHCCEEEEEcCc-----------cCCcCcHHHHHHHHHhhhhhcCCCEEEEEEeC
Confidence 35667788889999999998632 234567777777777642 245665555443
No 85
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=22.17 E-value=1.1e+02 Score=28.17 Aligned_cols=55 Identities=9% Similarity=0.030 Sum_probs=37.8
Q ss_pred chHHHHHHHHhhCCEEEEEeccCCCCccccCCCCCCCCChhHHHHHHHHHH------hCCCCEEEEEeCCce
Q 010408 208 QLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAK------ASRGPVVLVLMCGGP 273 (511)
Q Consensus 208 ~~~~~a~~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~va~------~~~kpvVvVl~~g~P 273 (511)
.++.+..+...+||.+|++.-. -+..+|+.-..+|+.+.. ..+||++++..+|++
T Consensus 68 ~~~~~~~~~l~~AD~iI~~sP~-----------y~~~~p~~lK~~iDr~~~~~~~~~l~gK~~~~i~t~g~~ 128 (242)
T 1sqs_A 68 DDGGVIKKELLESDIIIISSPV-----------YLQNVSVDTKNFIERIGGWSHLFRLAGKFVVTLDVAESN 128 (242)
T ss_dssp STHHHHHHHHHHCSEEEEEEEE-----------CSSSCCHHHHHHHHHTGGGTTTTTTTTCEEEEEEEESSC
T ss_pred HHHHHHHHHHHHCCEEEEEccc-----------cccCCCHHHHHHHHHHHHhccccccCCCEEEEEEeCCCC
Confidence 4567777888999999998732 234578777788887631 246777776666654
No 86
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=21.31 E-value=1.2e+02 Score=27.32 Aligned_cols=37 Identities=8% Similarity=0.067 Sum_probs=27.3
Q ss_pred HHHHHHHHhhCCEEEEEeccCCCCccccCCCCCCCCChhHHHHHHHHH
Q 010408 210 IGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVA 257 (511)
Q Consensus 210 ~~~a~~~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~va 257 (511)
..+..+...+||.+|++.= --+..+|+.-..+|+.+.
T Consensus 78 ~~~~~~~l~~AD~iV~~~P-----------~y~~~~pa~lK~~iD~~~ 114 (212)
T 3r6w_A 78 SDQLVGELFDSDLLVISTP-----------MYNFSVPSGLKAWIDQIV 114 (212)
T ss_dssp HHHHHHHHHHCSEEEEEEE-----------CBTTBCCHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCEEEEEcC-----------cccccCCHHHHHHHHHHh
Confidence 4555677899999999862 224567888888888884
No 87
>3zuc_A Cellulosomal scaffoldin; crystalline cellulose-binding protein, sugar binding protein cellulosome; HET: EDO 1PE; 1.00A {Acetivibrio cellulolyticus} SCOP: b.2.2.0 PDB: 3zu8_A* 3zqw_A*
Probab=21.20 E-value=36 Score=29.97 Aligned_cols=34 Identities=9% Similarity=-0.012 Sum_probs=27.7
Q ss_pred cccc--cccCCCCeEEEEEEecCCCCeeEEeCCCCEE
Q 010408 449 GFKK--VHVTAGALQSVRLDIHVCKHLSVVDKFGIRR 483 (511)
Q Consensus 449 gF~k--v~L~pGe~~~v~~~l~~~~~ls~~d~~~~~~ 483 (511)
+|.- -.|.||++..|.|.|.. .+.+-||...+|-
T Consensus 90 ~F~~~ag~l~pg~~~eiq~Ri~~-~dws~~dqsnDyS 125 (153)
T 3zuc_A 90 AFSSAAGTLAANTSIEVQGRFAK-SDWTNYNQADDYS 125 (153)
T ss_dssp EECGGGCEECTTEEEEEEEEEEE-TTCCCEEGGGCTT
T ss_pred EeCCCCceECCCCceEEEEEEEc-CCCcccccccCcc
Confidence 5776 47999999999999997 8888899765543
No 88
>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*
Probab=20.84 E-value=37 Score=33.61 Aligned_cols=56 Identities=21% Similarity=0.306 Sum_probs=28.3
Q ss_pred HHhhCCEEEEEeccCCCCccccCCCCCCC-CC-hhHHHHHHHHHHhCCCCEEEEEeCCceEEc
Q 010408 216 AARQADATVLVMGLDQSIEAEFIDRAGLL-LP-GRQQELVSRVAKASRGPVVLVLMCGGPVDV 276 (511)
Q Consensus 216 ~a~~aD~vVv~vG~~~~~e~Eg~Dr~~l~-Lp-~~q~~Li~~va~~~~kpvVvVl~~g~P~~l 276 (511)
+.++||+||++.|... .+|-+|.+|- -. .--.++++++.+.++ ..++++ .++|+++
T Consensus 73 a~~~aDiVvi~ag~~~---kpG~tR~dL~~~N~~I~~~i~~~i~~~~p-~a~ilv-vtNPvdi 130 (326)
T 3vku_A 73 DAKDADLVVITAGAPQ---KPGETRLDLVNKNLKILKSIVDPIVDSGF-NGIFLV-AANPVDI 130 (326)
T ss_dssp GGTTCSEEEECCCCC-------------------CHHHHHHHHHTTTC-CSEEEE-CSSSHHH
T ss_pred HhcCCCEEEECCCCCC---CCCchHHHHHHHHHHHHHHHHHHHHhcCC-ceEEEE-ccCchHH
Confidence 4679999999988543 3444565431 11 113456777776543 444444 4689876
No 89
>2l1n_A Uncharacterized protein; DUF1823, hypothetical protein, cyanobacteria, structural GEN PSI-biology, protein structure initiative; NMR {Synechococcus elongatus}
Probab=20.30 E-value=29 Score=28.97 Aligned_cols=15 Identities=13% Similarity=0.452 Sum_probs=12.2
Q ss_pred HhhhhhcCCCcEEEC
Q 010408 132 NTIHGQWRLDGYIVS 146 (511)
Q Consensus 132 ~lLR~e~gF~G~VvS 146 (511)
.+||++|||+|+=|.
T Consensus 81 QlLKe~LgFkGYki~ 95 (120)
T 2l1n_A 81 QLLKEELGFAGYSIN 95 (120)
T ss_dssp THHHHTTCCCCCCGG
T ss_pred HHHHHhcCCCceeec
Confidence 578899999997654
No 90
>3e9t_A Na/Ca exchange protein; CBD1, CALX, membrane, transmembrane, membrane protein; 1.60A {Drosophila melanogaster} SCOP: b.1.27.0
Probab=20.18 E-value=2.3e+02 Score=22.96 Aligned_cols=54 Identities=11% Similarity=0.092 Sum_probs=30.4
Q ss_pred EEEEEEeCCCCCcceEEEEEeeCCCCC-CCcccccccccccccCCCCe-EEEEEEecC
Q 010408 414 LHVDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGAL-QSVRLDIHV 469 (511)
Q Consensus 414 v~v~V~NtG~~~G~evvQlY~~~~~~~-~~P~k~L~gF~kv~L~pGe~-~~v~~~l~~ 469 (511)
++|+|+=+|...|.-.|..-..+-.+. ..=..-.. ..+..+|||+ |++++.|--
T Consensus 21 ~~v~V~R~g~~~~~v~V~y~t~~gTA~~g~Dy~~~~--g~l~F~~Get~k~i~V~I~d 76 (114)
T 3e9t_A 21 FEVRVVRRGDISTYASVEYETQDGTASAGTDFVGRK--GLLSFPPGVDEQRFRIEVID 76 (114)
T ss_dssp EEEEEEEEECCSSCEEEEEEEECSSSCBTTTBCCCE--EEEEECTTCCEEEEEEEBCC
T ss_pred EEEEEEEECCCCeeEEEEEEeECCccCCCCCceEcc--eEEEEeCCcEEEEEEEEEEc
Confidence 556666667777777777655553332 11111111 3556799996 566666653
Done!