Query 010411
Match_columns 511
No_of_seqs 208 out of 388
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 06:13:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010411.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010411hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 99.6 7E-15 2.4E-19 151.7 13.7 297 91-418 20-383 (408)
2 3zy2_A Putative GDP-fucose pro 99.3 1.5E-11 5.3E-16 126.2 16.3 272 91-415 6-348 (362)
3 2de0_X Alpha-(1,6)-fucosyltran 98.1 0.00047 1.6E-08 74.3 22.7 257 89-414 141-420 (526)
4 2hhc_A NODZ, nodulation fucosy 97.7 0.00043 1.5E-08 68.9 14.6 266 92-408 3-294 (330)
5 3l32_A Phosphoprotein; antipar 31.9 22 0.00076 26.5 1.9 26 234-259 2-27 (45)
6 2ct9_A Calcium-binding protein 30.2 70 0.0024 28.2 5.4 29 423-451 111-142 (208)
7 1s6c_A KV4 potassium channel-i 29.6 12 0.00041 32.1 0.2 30 423-452 90-122 (183)
8 1wgl_A TOLL-interacting protei 28.6 24 0.00082 27.4 1.7 49 346-399 10-58 (59)
9 2l2e_A Calcium-binding protein 25.9 68 0.0023 27.4 4.4 31 422-452 96-129 (190)
10 1l2m_A REP protein; A+B fold, 19.7 1.1E+02 0.0037 27.0 4.3 29 312-341 17-45 (118)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=99.59 E-value=7e-15 Score=151.68 Aligned_cols=297 Identities=16% Similarity=0.238 Sum_probs=163.7
Q ss_pred CCCcEEEEEe-cC-cchhhHHHHHHHHHHHHHhcCc----eeecccCCCcccCCC------CCCCccccHHHHHHhcccc
Q 010411 91 TSNGFLKVSC-NG-GLNQMRAAICDMVTVAQLLNLT----LVVPELDKTSFWADP------SNFEDIFNVRHFIDSLRDE 158 (511)
Q Consensus 91 ~snGyl~V~~-nG-GLNqqR~~IcDaV~vAr~LNAT----LViP~L~~~s~W~D~------S~F~dIFDvdhFI~sL~~d 158 (511)
..++||+-.. .| |.|+||...-.|.+.|+.||.| ||||-...-.-|+-. -.|++.||++++ +..
T Consensus 20 ~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L----~~~ 95 (408)
T 4ap5_A 20 SRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSL----NKN 95 (408)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHH----HTT
T ss_pred cccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHH----Hhh
Confidence 4589999875 45 8999999999999999999999 999966433335332 379999999875 345
Q ss_pred ceEeccCchhhhhhcCC------------------C----CC------ccCCCCcCChHHH----HhhccccccccceEE
Q 010411 159 VRIVRRLPKKYSRKYGY------------------S----PM------EMPPVSWSNEKYY----LQQILPHFSKHKVLH 206 (511)
Q Consensus 159 VrIvk~LP~~~~~~~~~------------------~----~~------~~~p~~ws~~~yY----~~~ilP~l~k~~Vi~ 206 (511)
|+|+.- +++.+.... . .. ...+.......++ .+...-......-+.
T Consensus 96 vpVI~m--eeFl~~~~~~~~~~v~~l~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~gpfw~~~~v~~~~~~c~~ 173 (408)
T 4ap5_A 96 IPVIEY--EQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFWGYEETRGLNVSCLS 173 (408)
T ss_dssp SCEEEH--HHHHHHSSSSEEEEEEEEECCTTCCCTTCCCCCEEEECCSSCCSCEECTTSCEECCGGGCTTCEEEEEEEEE
T ss_pred CCeeEH--HHHHHHhCCCCCcceeeccccHhhcccccccchhhhhhhhhccccccccccCccCCcccccccccCCceeEE
Confidence 555521 111110000 0 00 0000000000000 000000001111111
Q ss_pred E----------------------eccCcccccCCCCchhhhhhhhhcccccccchHHHHHHHHHHHHHhhcCCeEEEecc
Q 010411 207 F----------------------NRTDTRLANNGIPFDLQKLRCRVNFQGLKFTPKIETLGYELVRILQEKGPFVALHLR 264 (511)
Q Consensus 207 l----------------------~~~d~RLa~d~lp~eiQrLRCrvnf~ALrF~~~I~~Lg~~lV~RLr~~G~fiAlHLR 264 (511)
+ ..+...|+.---..+...+| ..|+|.+.|.+.|++.++..-. ++|+++|+|
T Consensus 174 ~~~~~~~~~~~~~~~~~~~s~~v~~~e~~l~~~~~~~~~~~~~-----r~l~~s~~l~~~a~~fi~~~L~-~~~~~~h~r 247 (408)
T 4ap5_A 174 VQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTR-----RSMVFARHLREVGDEFRSRHLN-STDDADRIP 247 (408)
T ss_dssp ECSBGGGGHHHHHHCTTCSEEEEESGGGSBCSSTTSHHHHHHH-----HTCCBCHHHHHHHHHHHHHHHC-CCTTTTTCC
T ss_pred EeecchhhhhhhhhcCChhhhhhhhcccCCccccchHhhhhHH-----HHhhhhHHHHHHHHHHHHHHhC-cccceeecc
Confidence 1 11111121110011222211 3799999999999999887653 578888888
Q ss_pred cchhhhhhhccCCCCChhHHHHHHHHHhcCccccccccChHHHhcCCCCCCCHHHHH-HHHHHcCCCCCceEEEEecccc
Q 010411 265 YEMDMLAFSGCTHGCSMGEAEELKRLRYAYPWWREKEIVSEERRSQGLCPLTPEEAA-LVLQALGIDKDTHIYIAAGEIY 343 (511)
Q Consensus 265 ~E~DMLAfsgC~~g~~~~E~~eL~~~R~~~~~wk~k~i~~~~~R~~G~CPLTPeEvg-l~LralGf~~~T~IYlAsGeiy 343 (511)
.+.|+... |.......-. -+.-.||+.... ......|=.+-++++ .+.+.+.=-+-+.||||+-+.
T Consensus 248 ~~~dw~~~--~~~~~~~~~~------~y~~~H~Rr~d~----~~~~~~~~ps~~~~~~~i~~~~~~~~~~~VyiATD~~- 314 (408)
T 4ap5_A 248 FQEDWMKM--KVKLGSALGG------PYLGVHLRRKDF----IWGHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDAV- 314 (408)
T ss_dssp CCSSGGGC--CCCTTCBCCE------EEEEEEECCTTT----TTTTCSSSCCHHHHHHHHHHHHHHHTCSCEEEEECCC-
T ss_pred cchhHhhh--hcccccccCC------Cccccccccccc----hhhhhccCCCHHHHHHHHHHHHHhcCCCEEEEeCCCc-
Confidence 88777654 3321110000 000012221100 001112311223332 233223222445899998653
Q ss_pred CCccchHHHHHhCCcccccccCCChhhhhhhccccchhhhhhheeccCCCeeeecCCCchhhhhhhhhcccCCcc
Q 010411 344 GGEKRLAALRAAFPRIVRKEMLLDPAELQLFQNHSSQMAALDFMVSTASDIFIPTYDGNMAKVVEGHRRYLGFKK 418 (511)
Q Consensus 344 Gg~~~l~~Lr~~FPnl~tKe~L~s~eEL~pf~~~ss~~AALDY~Vcl~SDvFv~t~~GNfa~~V~GhR~y~G~~k 418 (511)
+..+..|++.+|.++.-.. ..+++..+ ...+.|.||-+||.+||+||+|..++|+..|.-.|.+.|+..
T Consensus 315 --~~~~~~l~~~~~~~~~~~~--~~~~~~~~--~d~~~a~idq~Ic~~a~~FiGt~~StfS~~I~~eR~~~G~~~ 383 (408)
T 4ap5_A 315 --RKEYEELKKLLPEMVRFEP--TWEELELY--KDGGVAIIDQWICAHARFFIGTSVSTFSFRIHEEREILGLDP 383 (408)
T ss_dssp --HHHHHHHHHHCTTEECCCC--CHHHHHHH--HHHHHHHHHHHHHHTEEEEEBCTTCHHHHHHHHHHHHHTBCG
T ss_pred --hhHHHHHHHhCCCcEEecC--cchhhhcc--CcchhhHHHHHHHHhCCeeEeCCcCchhHHHHHHHHhcCCCC
Confidence 4457889999998764322 23445443 234679999999999999999999999999999999999764
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=99.34 E-value=1.5e-11 Score=126.22 Aligned_cols=272 Identities=18% Similarity=0.335 Sum_probs=163.3
Q ss_pred CCCcEEEE-EecCcchhhHHHHHHHHHHHHHhcCceeecccCCCcccCCC--CCCCccccHHHHHHhccccceEe-----
Q 010411 91 TSNGFLKV-SCNGGLNQMRAAICDMVTVAQLLNLTLVVPELDKTSFWADP--SNFEDIFNVRHFIDSLRDEVRIV----- 162 (511)
Q Consensus 91 ~snGyl~V-~~nGGLNqqR~~IcDaV~vAr~LNATLViP~L~~~s~W~D~--S~F~dIFDvdhFI~sL~~dVrIv----- 162 (511)
.+||||+. .|-|-+.||-....-+.+.|+.||.|||||-+-.-.. +.+ -.|++-|+++. |+..-|||
T Consensus 6 d~~Gyi~yCPCMGRFGNQadhfLG~LafAk~lnRTLvlPpwi~y~~-~~~~~vpf~~yF~v~~----l~~yhrvi~me~F 80 (362)
T 3zy2_A 6 DPNGYIVFCPCMGRFGNQVDQFLGVLAFAKALDRTLVLPNFIEFKH-PETKMIPFEFLFQVGT----VAKYTRVVTMQEF 80 (362)
T ss_dssp CTTCEEEECCCSSSHHHHHHHHHHHHHHHHHHTCEEECCCEEECSS-SSCEEECHHHHBCHHH----HTTTSCEECHHHH
T ss_pred CCCccEEeCCCcCccccHHHHHHHHHHHHHhhCceEecCccccccC-Ccccccchhheeecch----hhhhceeeeHHHH
Confidence 35999998 6999999999999999999999999999987632211 111 25888888765 33333444
Q ss_pred -ccC-----chhhhh------h--------------cCCCC-------CccCC------------CCcC----ChHHHHh
Q 010411 163 -RRL-----PKKYSR------K--------------YGYSP-------MEMPP------------VSWS----NEKYYLQ 193 (511)
Q Consensus 163 -k~L-----P~~~~~------~--------------~~~~~-------~~~~p------------~~ws----~~~yY~~ 193 (511)
++| |.+-.. + .+-++ +.+.+ .+.+ ..+ +.+
T Consensus 81 m~~lap~~WP~~~R~~~C~~~~~~~~~~~~~~~C~~K~GNPFgpfWd~f~v~F~~se~~~~~~~~l~~~~~~~~~~-W~~ 159 (362)
T 3zy2_A 81 TKKIMPTVWPPEKRKAFCWTPRQAIYDKSAEPGCHSKEGNPFGPYWDQIDVSFVGDEYFGDIPGGFDLNQMGSRKK-WLE 159 (362)
T ss_dssp HHHTHHHHSCGGGCEEEESSCBC-------CCBCCTTSSTTHHHHHHHTTCCCCEEEECTTSTTTTCC-------C-HHH
T ss_pred HHHhccccCCcccceEeeccccccccCCCCCCCCCCCCCCCCCcchhccccccccceeccCccccccccchhHHHH-HHH
Confidence 222 111100 0 01111 11111 1111 111 122
Q ss_pred hccccccccceEEEeccCc--ccccCCCCchhhhhhhhhcccccccchHHHHHHHHHHHHHhhcCCeEEEecccchhhhh
Q 010411 194 QILPHFSKHKVLHFNRTDT--RLANNGIPFDLQKLRCRVNFQGLKFTPKIETLGYELVRILQEKGPFVALHLRYEMDMLA 271 (511)
Q Consensus 194 ~ilP~l~k~~Vi~l~~~d~--RLa~d~lp~eiQrLRCrvnf~ALrF~~~I~~Lg~~lV~RLr~~G~fiAlHLR~E~DMLA 271 (511)
.-.| .+|-|+.|++.-. +...++ -.||| -|+++++|.+.|++.|+.--. +||||+|||--.|+.-
T Consensus 160 ~~p~--~~~pVlAf~gaPa~FPv~~e~--r~Lqk--------Ym~WS~~i~~~a~~fI~~~L~-rpyVgIHLR~G~DW~~ 226 (362)
T 3zy2_A 160 KFPS--EEYPVLAFSSAPAPFPSKGKV--WSIQK--------YLRWSSRITEQAKKFISANLA-KPFVAVHLRNDADWVR 226 (362)
T ss_dssp HSCT--TTCSEEEESSCSSCSSCCGGG--GGGGG--------GCCBCHHHHHHHHHHHHHHCC-SSEEEEEECCCHHHHH
T ss_pred hCCc--ccCceEeecCCCCCCCcChhh--HhHHH--------hccccHHHHHHHHHHHHHhcC-CCeEEEEEecCCcHHH
Confidence 2222 2678888874221 111110 23443 699999999999998888443 3999999999999986
Q ss_pred hhccCCCCChhHHHHHHHHHhcCccccccccChH---HHhcCC-----CCCCCHHH----HHHHHHHcCCCCCceEEEEe
Q 010411 272 FSGCTHGCSMGEAEELKRLRYAYPWWREKEIVSE---ERRSQG-----LCPLTPEE----AALVLQALGIDKDTHIYIAA 339 (511)
Q Consensus 272 fsgC~~g~~~~E~~eL~~~R~~~~~wk~k~i~~~---~~R~~G-----~CPLTPeE----vgl~LralGf~~~T~IYlAs 339 (511)
. |.+--..+ . ++.- -+++ -+...| .|==+.++ |..+++.++. ..||||+
T Consensus 227 a--C~hlk~~~-------~----~~lf---aSPQC~Gy~~~~~~lt~emClPSle~I~rqIk~~vk~~~l---ksVFIAT 287 (362)
T 3zy2_A 227 V--CEHIDTTT-------N----RPLF---ASEQCLGEGHHLGTLTKEICSPSKQQILEQIVEKVGSIGA---KSVFVAS 287 (362)
T ss_dssp H--HHTCCTTT-------C----CCCT---TTHHHHCGGGTTCCCCHHHHSCCHHHHHHHHHHHHHHHTC---SEEEEEE
T ss_pred H--Hhhhcccc-------C----cccc---cCCcccCCcccCcccchhccCCCHHHHHHHHHHHHHhcCC---cEEEEec
Confidence 6 76411100 0 0000 0000 000111 23123333 4455566654 4999999
Q ss_pred ccccCCccchHHHHHhCCcccccccCCChhhhhhhccccchhhhhhheeccCCCeeeecCCCchhhhhhhhhcccC
Q 010411 340 GEIYGGEKRLAALRAAFPRIVRKEMLLDPAELQLFQNHSSQMAALDFMVSTASDIFIPTYDGNMAKVVEGHRRYLG 415 (511)
Q Consensus 340 GeiyGg~~~l~~Lr~~FPnl~tKe~L~s~eEL~pf~~~ss~~AALDY~Vcl~SDvFv~t~~GNfa~~V~GhR~y~G 415 (511)
-.. ..++-|+++|+....+ +.+ +. ...|+||.+||.+||+||+|..++|+..|.-.|-..|
T Consensus 288 Da~----~~~~ELk~~L~~~~v~--vv~---~~------pe~a~ID~~I~~~A~~FIGN~~SSFSa~I~rERdi~G 348 (362)
T 3zy2_A 288 DKD----HMIDEINEALKPYEIE--AHR---QE------PDDMYTSLAIMGRADLFVGNCVSTFSHIVKRERDHAG 348 (362)
T ss_dssp SSC----CCHHHHHHHHGGGTCC--EEC---CS------SCCHHHHHHHHHHSSEEEECTTCHHHHHHHHHHHHSS
T ss_pred CCH----HHHHHHHHHhhccCce--EEE---eC------CchhHHHHHHHHhCCEeecCccccccHHHHHHHHhcC
Confidence 653 4578899988752111 110 00 1178999999999999999999999999999999888
No 3
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=98.06 E-value=0.00047 Score=74.33 Aligned_cols=257 Identities=16% Similarity=0.199 Sum_probs=145.9
Q ss_pred CcCCCcEEEEEe--cCcchhhHHHHHHHHHHHHHhcCceeecccCCCcccCC-CCCCCccccHHHHHHhccccceEeccC
Q 010411 89 NYTSNGFLKVSC--NGGLNQMRAAICDMVTVAQLLNLTLVVPELDKTSFWAD-PSNFEDIFNVRHFIDSLRDEVRIVRRL 165 (511)
Q Consensus 89 ~~~snGyl~V~~--nGGLNqqR~~IcDaV~vAr~LNATLViP~L~~~s~W~D-~S~F~dIFDvdhFI~sL~~dVrIvk~L 165 (511)
.|.+..||+... ..|+..+-..++-|..+|..+|.|||+-.=. |.- ...|+++|.. + ...+.--
T Consensus 141 ~Cs~aK~Lv~~~~~~~GfGs~lh~l~~~L~~A~~~~Rtliidd~~----w~Y~~g~w~~yF~P--~----s~~C~~~--- 207 (526)
T 2de0_X 141 DCSKAKKLVCNINKGCGYGCQLHHVVYCFMIAYGTQRTLILESQN----WRYATGGWETVFRP--V----SETCTDR--- 207 (526)
T ss_dssp CGGGSCEEEEECCCSSCHHHHHHHHHHHHHHHHHHTCEEEEECTT----CSSCTTCGGGTBCC--S----CSSCCCC---
T ss_pred cCCCCCEEEEEecCCCchHHHHHHHHHHHHHHHhhCCEEEEECCC----CCcCCCCHHHhhhC--c----CccccCC---
Confidence 577789999986 4799999999999999999999999995432 332 2468888774 1 2221110
Q ss_pred chhhhhhcCCCCCccCCCCcCChHHHHhhccccccccceEEEeccC-----cccccCCCCchh----hhhh-------h-
Q 010411 166 PKKYSRKYGYSPMEMPPVSWSNEKYYLQQILPHFSKHKVLHFNRTD-----TRLANNGIPFDL----QKLR-------C- 228 (511)
Q Consensus 166 P~~~~~~~~~~~~~~~p~~ws~~~yY~~~ilP~l~k~~Vi~l~~~d-----~RLa~d~lp~ei----QrLR-------C- 228 (511)
| ......|..... -..+.||.+.-.+ .+..+-.+|.++ +++. |
T Consensus 208 ~------------~~~~~~w~~~~~--------~~~~~vV~~~~i~~~~~~~~~~~~~~P~~~~~~L~~l~~dp~~w~~~ 267 (526)
T 2de0_X 208 S------------GISTGHWSGEVK--------DKNVQVVELPIVDSLHPRPPYLPLAVPEDLADRLVRVHGDPAVWWVS 267 (526)
T ss_dssp C------------CSCCCBCCCTTG--------GGGCSEEEECCGGGCSSCCSCCTTCEEGGGHHHHHHHCSCHHHHHHH
T ss_pred C------------ccccCCCCCccc--------CCCcceEEeeccccccccccccccccchhHHHHHHhccCCcHHHHHH
Confidence 0 001122332210 0123333322111 111111344332 2221 1
Q ss_pred hhcccccccchHHHHHHHHHHHHHhhcCCeEEEecccchhhhhhhccCCCCChhHHHHHHHHHhcCccccccccChHHHh
Q 010411 229 RVNFQGLKFTPKIETLGYELVRILQEKGPFVALHLRYEMDMLAFSGCTHGCSMGEAEELKRLRYAYPWWREKEIVSEERR 308 (511)
Q Consensus 229 rvnf~ALrF~~~I~~Lg~~lV~RLr~~G~fiAlHLR~E~DMLAfsgC~~g~~~~E~~eL~~~R~~~~~wk~k~i~~~~~R 308 (511)
.+.-..+|++++|++..+++.+.+.-.+|.|+||-|-- |-...- ...-+.+ +-+...
T Consensus 268 q~~~yl~rP~~~i~~~I~~~~~~l~~~~piVGVHIRrG-Dk~~~E---~~~~~~~-~Y~~~v------------------ 324 (526)
T 2de0_X 268 QFVKYLIRPQPWLEKEIEEATKKLGFKHPVIGVHVRRT-DKVGTE---AAFHPIE-EYMVHV------------------ 324 (526)
T ss_dssp HHHHHHTCBCHHHHHHHHHHHHHHTCCSSEEEEEECCC------C---CCSCSHH-HHHHHH------------------
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCCCCCEEEEEEeCC-CCCccc---cccCCHH-HHHHHH------------------
Confidence 11112489999999999999988866789999999973 332210 1111110 001111
Q ss_pred cCCCCCCCHHHHHHHHHHcCCCCCceEEEEeccccCCccchHHHHHhCCcc--cccccCC-Chhhhhhhccccchhhhhh
Q 010411 309 SQGLCPLTPEEAALVLQALGIDKDTHIYIAAGEIYGGEKRLAALRAAFPRI--VRKEMLL-DPAELQLFQNHSSQMAALD 385 (511)
Q Consensus 309 ~~G~CPLTPeEvgl~LralGf~~~T~IYlAsGeiyGg~~~l~~Lr~~FPnl--~tKe~L~-s~eEL~pf~~~ss~~AALD 385 (511)
++.-..|+.......+.||||+-+. ..++.+++.||+. ++-.... +...-..+...+...+.+|
T Consensus 325 ---------~~~~~~l~~~~~~~~~~ifLATDDp----~v~~e~k~~~p~~~~~~d~~~~~~a~~~~R~s~~~l~~~l~D 391 (526)
T 2de0_X 325 ---------EEHFQLLARRMQVDKKRVYLATDDP----SLLKEAKTKYPNYEFISDNSISWSAGLHNRYTENSLRGVILD 391 (526)
T ss_dssp ---------HHHHHHHHTTSCCSSCEEEEEESCH----HHHHHHHHHCTTSEEECCCCSSCSSGGGGGTCCTHHHHHHHH
T ss_pred ---------HHHHHHHHhhcCCCCCeEEEEcCCH----HHHHHHHHhCCCCEEecCcccccccCccccccHHHHHHHHHH
Confidence 1111112333467789999999884 6678888889985 3221111 1111111111122468999
Q ss_pred heeccCCCeeeecCCCchhhhhhhhhccc
Q 010411 386 FMVSTASDIFIPTYDGNMAKVVEGHRRYL 414 (511)
Q Consensus 386 Y~Vcl~SDvFv~t~~GNfa~~V~GhR~y~ 414 (511)
.++.++||+||+|.++||++++...|.-.
T Consensus 392 L~lLs~cd~~Vgt~sS~~srla~~l~~~~ 420 (526)
T 2de0_X 392 IHFLSQADFLVCTFSSQVCRVAYEIMQTL 420 (526)
T ss_dssp HHHHHHSSEEEECTTSHHHHHHHHHHTTS
T ss_pred HHHHhcCCeeecCCCCHHHHHHHHHhcCc
Confidence 99999999999999999999988766443
No 4
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=97.74 E-value=0.00043 Score=68.86 Aligned_cols=266 Identities=14% Similarity=0.194 Sum_probs=129.0
Q ss_pred CCcEEEEEecCcchhhHHHHHHHHHHHHHhcCceeecccCCCcccCCCCCCCccccHHHHHHhcccc--ceEeccCchhh
Q 010411 92 SNGFLKVSCNGGLNQMRAAICDMVTVAQLLNLTLVVPELDKTSFWADPSNFEDIFNVRHFIDSLRDE--VRIVRRLPKKY 169 (511)
Q Consensus 92 snGyl~V~~nGGLNqqR~~IcDaV~vAr~LNATLViP~L~~~s~W~D~S~F~dIFDvdhFI~sL~~d--VrIvk~LP~~~ 169 (511)
+..||++...|||.+|=-+++.|.++|...|.+|+|--.. ..|-. ..|.+.| ...|. ...+- ..+... ...
T Consensus 3 ~~r~iv~~~~gGLGNqm~~~a~a~~~A~~t~r~l~vd~~~-~~y~~--~~~~~~f-p~~F~-~v~~~~~~~~~~~--~~~ 75 (330)
T 2hhc_A 3 KERFVISRRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRG-SCYVE--QPFSNAF-PAFFE-PVEDIAGVPVICD--DRV 75 (330)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHHTCEEEEECBT-CTTCS--STTSBSH-HHHBC-CCSEETTEEEECS--GGG
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHHHHHHhCCEEEEECCC-cccCC--CCccccC-ccccc-chhhhcccceecc--ccc
Confidence 5679999999999999999999999999999998886443 22321 3466666 22332 11100 011110 000
Q ss_pred hhhcCCCCCccCCCCcCChH---HH--Hhhcc-------ccc---cccceEEEeccCcccccCCCCchhhhhhhhhcccc
Q 010411 170 SRKYGYSPMEMPPVSWSNEK---YY--LQQIL-------PHF---SKHKVLHFNRTDTRLANNGIPFDLQKLRCRVNFQG 234 (511)
Q Consensus 170 ~~~~~~~~~~~~p~~ws~~~---yY--~~~il-------P~l---~k~~Vi~l~~~d~RLa~d~lp~eiQrLRCrvnf~A 234 (511)
.. .... ....|.-|.... .| .+++. .++ ......++.+ +..+ ...++.-.-...|.-
T Consensus 76 ~~-~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~-~~~~-----~w~~~~~~~~~i~~y 147 (330)
T 2hhc_A 76 NQ-LSFP-GPFFPRWWNRPSIDCINRPDEQIFRERDELTELFQAREDSEANTIVC-DACL-----MWRCSEEAERLIFRN 147 (330)
T ss_dssp GT-CCCC-SSEESGGGGSCGGGGSCCCHHHHHHHHHHHHHHHHSSSCCSCSEEEE-CSCC-----TTSSCHHHHHHHHHH
T ss_pred cc-ccCC-CCcCchhhhccccccccChHHhhhhhhhhhhhhhhhhhccCCCeEEc-cccc-----ccchhhhhHHHHHhc
Confidence 00 0000 000000111110 00 11111 111 1111012221 0001 001111112344577
Q ss_pred cccchHHHHHHHHHHHHHhhcCCeEEEecccchhhhhhhccCCCCChhHHHHHHHHHhcCccccccccChHHHhcCCCCC
Q 010411 235 LKFTPKIETLGYELVRILQEKGPFVALHLRYEMDMLAFSGCTHGCSMGEAEELKRLRYAYPWWREKEIVSEERRSQGLCP 314 (511)
Q Consensus 235 LrF~~~I~~Lg~~lV~RLr~~G~fiAlHLR~E~DMLAfsgC~~g~~~~E~~eL~~~R~~~~~wk~k~i~~~~~R~~G~CP 314 (511)
|+++++|++..+++.+.+-...++|++|.|.=.+. ..|.++- .|.+. .||
T Consensus 148 l~p~~~i~~~i~~~~~~~~~~~~~VGVHIRrgD~~---~~~~~~~----------------~~~~~-----------~~~ 197 (330)
T 2hhc_A 148 IKLRSEIRARIDALYEEHFSGHSIIGVHVRHGNGE---DIMEHAP----------------YWADS-----------ELA 197 (330)
T ss_dssp SCBCHHHHHHHHHHHHHHTTTSEEEEEEECC-------------------------------CHHH-----------HHH
T ss_pred CCccHHHHHHHHHHHHHhccCCceEEEEEecCCCC---cccccCc----------------chHHH-----------hHH
Confidence 89999999999988876434469999999964321 1222210 01110 011
Q ss_pred CCHHHHHHHHHHc-C-CC-CCceEEEEeccccCCccchHHHHHhCCcccccc-cCCCh--hhhh-hhcc-ccchhhhhhh
Q 010411 315 LTPEEAALVLQAL-G-ID-KDTHIYIAAGEIYGGEKRLAALRAAFPRIVRKE-MLLDP--AELQ-LFQN-HSSQMAALDF 386 (511)
Q Consensus 315 LTPeEvgl~Lral-G-f~-~~T~IYlAsGeiyGg~~~l~~Lr~~FPnl~tKe-~L~s~--eEL~-pf~~-~ss~~AALDY 386 (511)
-++.-.-++.+ . .+ ++..|||||-+. ..++-|++.||++.+-. .+... ..+- +..+ ...+.+.+|.
T Consensus 198 --l~~~~~~i~~~~~~~~~~~~~vfvaSDd~----~~~~~lk~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~Dm 271 (330)
T 2hhc_A 198 --LHQVCMAIRKAKALSYPKPVKVFLCTDSA----QVLDQVSGLFPDVFAVPKRFQADRAGPLHSAEMGIEGGASALIDM 271 (330)
T ss_dssp --HHHHHHHHHHHHTSCCSSCEEEEEEESCH----HHHHHHHHHSTTEECCCC-----------CHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhccCcCceEEEEEeCCH----HHHHHHHHHcCCcccccceeecccccccccCchhhccchHHHHHH
Confidence 11111111111 1 22 468999999885 46788999999743321 11100 0000 0001 1235688999
Q ss_pred eeccCCCeee-ecCCCchhhhhh
Q 010411 387 MVSTASDIFI-PTYDGNMAKVVE 408 (511)
Q Consensus 387 ~Vcl~SDvFv-~t~~GNfa~~V~ 408 (511)
+...+||.+| .+..++|+...+
T Consensus 272 ~LLS~cd~~I~~~~~STFs~~aa 294 (330)
T 2hhc_A 272 YLLARCATVIRFPPTSAFTRYAR 294 (330)
T ss_dssp HHHTTCSEEEEESTTCGGGHHHH
T ss_pred HHHHcCCeeEECCCCCCHHHHHH
Confidence 9999999999 545788888665
No 5
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=31.93 E-value=22 Score=26.54 Aligned_cols=26 Identities=23% Similarity=0.540 Sum_probs=21.4
Q ss_pred ccccchHHHHHHHHHHHHHhhcCCeE
Q 010411 234 GLKFTPKIETLGYELVRILQEKGPFV 259 (511)
Q Consensus 234 ALrF~~~I~~Lg~~lV~RLr~~G~fi 259 (511)
++-|+.-+.++|.++|++|++...|.
T Consensus 2 ~vpfQs~LD~vG~qiVrkmKtGe~Ff 27 (45)
T 3l32_A 2 NLLFQSYLDNVGVQIVRQMRSGERFL 27 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTCCHH
T ss_pred CccHHHHHHHHHHHHHHHHHccccHH
Confidence 45688889999999999999865554
No 6
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A {Rattus norvegicus} PDB: 2e30_A
Probab=30.16 E-value=70 Score=28.20 Aligned_cols=29 Identities=14% Similarity=0.167 Sum_probs=20.9
Q ss_pred chHHHHHHhhhhc---CCCCChhHHHHHHHHH
Q 010411 423 DRKILVGLLDMHH---NGTLSFNEFTVAVRLA 451 (511)
Q Consensus 423 drk~l~~L~~~~~---~~~~~w~~F~~~v~~~ 451 (511)
....+..+|..++ +|.|+.+||...++.+
T Consensus 111 ~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~ 142 (208)
T 2ct9_A 111 RSNKLHFAFRLYDLDKDDKISRDELLQVLRMM 142 (208)
T ss_dssp HHHHHHHHHHHHCTTCSSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCEEcHHHHHHHHHHH
Confidence 4455666665554 7889999999988764
No 7
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=29.58 E-value=12 Score=32.12 Aligned_cols=30 Identities=13% Similarity=0.112 Sum_probs=21.2
Q ss_pred chHHHHHHhhhh---cCCCCChhHHHHHHHHHH
Q 010411 423 DRKILVGLLDMH---HNGTLSFNEFTVAVRLAH 452 (511)
Q Consensus 423 drk~l~~L~~~~---~~~~~~w~~F~~~v~~~h 452 (511)
....+..+|..+ .+|.|+.+||...++.++
T Consensus 90 ~~~~~~~~f~~~D~d~~G~i~~~e~~~~~~~~~ 122 (183)
T 1s6c_A 90 VHEKLRWTFNLYDINKDGYINKEEMMDIVKAIY 122 (183)
T ss_dssp HHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHHH
Confidence 334455555444 478999999999998864
No 8
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=28.59 E-value=24 Score=27.40 Aligned_cols=49 Identities=20% Similarity=0.364 Sum_probs=33.8
Q ss_pred ccchHHHHHhCCcccccccCCChhhhhhhccccchhhhhhheeccCCCeeeecC
Q 010411 346 EKRLAALRAAFPRIVRKEMLLDPAELQLFQNHSSQMAALDFMVSTASDIFIPTY 399 (511)
Q Consensus 346 ~~~l~~Lr~~FPnl~tKe~L~s~eEL~pf~~~ss~~AALDY~Vcl~SDvFv~t~ 399 (511)
+..++.|++|||++- ++.+- .=|+ .+..+..+|||-+..+..+-|=|++
T Consensus 10 ee~l~~L~emFP~ld-~~~I~--~vL~--a~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 10 EEDLKAIQDMFPNMD-QEVIR--SVLE--AQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp HHHHHHHHHHCSSSC-HHHHH--HHHT--TTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HHHHHHHHHHCCCCC-HHHHH--HHHH--HcCCCHHHHHHHHHcCcCCCCCCCC
Confidence 567899999999874 32221 1122 3445678999999999888776654
No 9
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Probab=25.93 E-value=68 Score=27.43 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=21.8
Q ss_pred cchHHHHHHhhhh---cCCCCChhHHHHHHHHHH
Q 010411 422 LDRKILVGLLDMH---HNGTLSFNEFTVAVRLAH 452 (511)
Q Consensus 422 Pdrk~l~~L~~~~---~~~~~~w~~F~~~v~~~h 452 (511)
+....+..+|..+ .+|.|+++||...+...+
T Consensus 96 ~~~~~~~~~f~~~D~d~~G~i~~~e~~~~~~~~~ 129 (190)
T 2l2e_A 96 ELNDKLIWAFQLYDLDNNGLISYDEMLRIVDAIY 129 (190)
T ss_dssp CSHHHHHHHHHHHCTTSCSCBCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhHccCCCCCcCcHHHHHHHHHHHH
Confidence 3445555555544 478999999999988753
No 10
>1l2m_A REP protein; A+B fold, RBD-like fold, viral protein; NMR {Tomato yellow leaf curl sardiniavirus} SCOP: d.89.1.4 PDB: 1l5i_A
Probab=19.71 E-value=1.1e+02 Score=26.98 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=22.7
Q ss_pred CCCCCHHHHHHHHHHcCCCCCceEEEEecc
Q 010411 312 LCPLTPEEAALVLQALGIDKDTHIYIAAGE 341 (511)
Q Consensus 312 ~CPLTPeEvgl~LralGf~~~T~IYlAsGe 341 (511)
.|||++||+...|+.|--+.+ ..||...+
T Consensus 17 ~c~l~Ke~~l~~l~~l~~p~~-~~yi~i~r 45 (118)
T 1l2m_A 17 KCDLTKENALSQITNLQTPTN-KLFIKICR 45 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSC-EEEEEEEE
T ss_pred CCCCCHHHHHHHHHhhcCCcc-eeeeeehh
Confidence 599999999999999985543 56665554
Done!