Query 010411
Match_columns 511
No_of_seqs 208 out of 388
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 06:14:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010411.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010411hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wgla_ a.5.2.4 (A:) Toll-inte 42.2 4.2 0.0003 30.2 1.3 49 346-399 10-58 (59)
2 d2ihoa2 d.3.1.18 (A:156-293) A 38.6 1.9 0.00014 36.5 -1.3 35 125-159 32-71 (138)
3 d1l5ia_ d.89.1.4 (A:) DNA-bind 28.1 27 0.002 28.8 4.3 29 312-341 17-45 (118)
4 d1oqya2 a.5.2.1 (A:317-360) DN 22.4 5.6 0.00041 28.0 -1.0 26 316-341 1-30 (44)
5 d1vjna_ d.157.1.4 (A:) Hypothe 19.7 83 0.006 26.8 6.1 54 95-157 130-184 (209)
6 d1jjcb2 a.6.1.1 (B:400-474) Do 17.6 38 0.0028 25.1 2.8 24 306-330 12-35 (75)
7 d1bjfa_ a.39.1.5 (A:) Neurocal 17.2 41 0.003 27.2 3.3 29 426-454 99-127 (181)
8 d1nyaa_ a.39.1.5 (A:) Caleryth 17.1 52 0.0038 25.6 3.8 30 424-453 6-38 (176)
9 d2gh1a1 c.66.1.49 (A:13-293) M 15.7 30 0.0022 30.8 2.1 92 229-331 98-189 (281)
10 d2g7ja1 d.198.5.1 (A:1-112) Pu 15.2 30 0.0022 28.0 1.7 26 315-344 3-28 (112)
No 1
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.22 E-value=4.2 Score=30.18 Aligned_cols=49 Identities=20% Similarity=0.373 Sum_probs=35.7
Q ss_pred ccchHHHHHhCCcccccccCCChhhhhhhccccchhhhhhheeccCCCeeeecC
Q 010411 346 EKRLAALRAAFPRIVRKEMLLDPAELQLFQNHSSQMAALDFMVSTASDIFIPTY 399 (511)
Q Consensus 346 ~~~l~~Lr~~FPnl~tKe~L~s~eEL~pf~~~ss~~AALDY~Vcl~SDvFv~t~ 399 (511)
+..+..|++|||++. ++.+ ..=|+ .+..+..+|+|=+.-+.-+.|-|+.
T Consensus 10 Ee~i~~LkeMFP~~D-~~vI--~~VL~--a~~G~vd~aid~LL~Msd~~~gp~s 58 (59)
T d1wgla_ 10 EEDLKAIQDMFPNMD-QEVI--RSVLE--AQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp HHHHHHHHHHCSSSC-HHHH--HHHHT--TTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HHHHHHHHHHCCCCC-HHHH--HHHHH--HcCCCHHHHHHHHHhcCCCCcCCCC
Confidence 567999999999986 3233 12233 4566788999999888888887764
No 2
>d2ihoa2 d.3.1.18 (A:156-293) Agglutinin MOA {Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]}
Probab=38.62 E-value=1.9 Score=36.53 Aligned_cols=35 Identities=29% Similarity=0.545 Sum_probs=29.8
Q ss_pred eeecccCCCcccCCC-----CCCCccccHHHHHHhccccc
Q 010411 125 LVVPELDKTSFWADP-----SNFEDIFNVRHFIDSLRDEV 159 (511)
Q Consensus 125 LViP~L~~~s~W~D~-----S~F~dIFDvdhFI~sL~~dV 159 (511)
||+|...-++.|+++ ..=+.|||-|.|--..+..|
T Consensus 32 LVLp~~~~s~IWk~SGL~~t~~R~~I~D~DdFA~~~KaAv 71 (138)
T d2ihoa2 32 LVLPNATFTQIWKDSGLPGSKWREQIYDCDDFAIAMKAAV 71 (138)
T ss_dssp ECCCHHHHHHHHHTTTCTTCCCBTTTBCHHHHHHHHHHHH
T ss_pred EEechHHHHHHHhccCCCCCcccccccccHHHHHHHHHHH
Confidence 899999999999987 34579999999988877655
No 3
>d1l5ia_ d.89.1.4 (A:) DNA-binding domain of REP protein {Geminivirus (Tomato yellow leaf curl virus - sardinia) [TaxId: 123735]}
Probab=28.06 E-value=27 Score=28.76 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=22.8
Q ss_pred CCCCCHHHHHHHHHHcCCCCCceEEEEecc
Q 010411 312 LCPLTPEEAALVLQALGIDKDTHIYIAAGE 341 (511)
Q Consensus 312 ~CPLTPeEvgl~LralGf~~~T~IYlAsGe 341 (511)
+|||||||+...|+.|--+.+. .||..++
T Consensus 17 ~C~l~ke~~l~~l~~l~~p~~~-~~i~v~r 45 (118)
T d1l5ia_ 17 KCDLTKENALSQITNLQTPTNK-LFIKICR 45 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSCE-EEEEEEE
T ss_pred CCCCCHHHHHHHHHHhcCCcce-eEEEEcc
Confidence 5999999999999999766554 5666544
No 4
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.44 E-value=5.6 Score=27.96 Aligned_cols=26 Identities=35% Similarity=0.538 Sum_probs=17.6
Q ss_pred CHHHHH--HHHHHcCCCCCc--eEEEEecc
Q 010411 316 TPEEAA--LVLQALGIDKDT--HIYIAAGE 341 (511)
Q Consensus 316 TPeEvg--l~LralGf~~~T--~IYlAsGe 341 (511)
||+|-. .=|.+|||+++. ++|+|-.+
T Consensus 1 T~ee~~aIeRL~~LGF~r~~viqay~ACdK 30 (44)
T d1oqya2 1 TPQEKEAIERLKALGFPESLVIQAYFACEK 30 (44)
T ss_dssp CTTTHHHHHHHHHHTCCSHHHHHHTSSSSS
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhCc
Confidence 455543 347899999986 46777655
No 5
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]}
Probab=19.74 E-value=83 Score=26.79 Aligned_cols=54 Identities=22% Similarity=0.380 Sum_probs=34.8
Q ss_pred EEEEEecCcchhhHHHHHHHHHHHHHhcCceeecccCCCcccCC-CCCCCccccHHHHHHhccc
Q 010411 95 FLKVSCNGGLNQMRAAICDMVTVAQLLNLTLVVPELDKTSFWAD-PSNFEDIFNVRHFIDSLRD 157 (511)
Q Consensus 95 yl~V~~nGGLNqqR~~IcDaV~vAr~LNATLViP~L~~~s~W~D-~S~F~dIFDvdhFI~sL~~ 157 (511)
.+++.+.|.. ...--+|+.+|+.|++-.|||-= |+. ...| ++=.+|.|++.++.
T Consensus 130 va~lpigg~~---~m~~~ea~~~~~~l~pk~viP~H-----~~t~~~~~-~~~~~~~f~~~~~~ 184 (209)
T d1vjna_ 130 VLLVPVGGTY---TIGPKEAKEVADLLNAKVIIPMH-----YKTKYLKF-NLLPVDDFLKLFDS 184 (209)
T ss_dssp EEEEECCSSS---SCCHHHHHHHHHHTTCSEEEEES-----CCCSSCCT-TCCCTHHHHTTSSC
T ss_pred EEEEecCCcc---ccCHHHHHHHHHHhCCCEEEEec-----cCCccccc-CcCCHHHHHHHhhh
Confidence 4555554432 23457899999999999999942 322 2222 45567888887663
No 6
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=17.55 E-value=38 Score=25.07 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=20.5
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCCC
Q 010411 306 ERRSQGLCPLTPEEAALVLQALGID 330 (511)
Q Consensus 306 ~~R~~G~CPLTPeEvgl~LralGf~ 330 (511)
-.+..|.. ++++|+..+|+.|||.
T Consensus 12 i~~~lG~~-i~~~~i~~~L~~Lg~~ 35 (75)
T d1jjcb2 12 ANRLLGTS-YPEAEQIAILKRLGCR 35 (75)
T ss_dssp HHHHHTCC-CCHHHHHHHHHHTTCE
T ss_pred HHHHhCCC-CCHHHHHHHHHHcCCc
Confidence 34567777 9999999999999996
No 7
>d1bjfa_ a.39.1.5 (A:) Neurocalcin {Cow (Bos taurus) [TaxId: 9913]}
Probab=17.16 E-value=41 Score=27.16 Aligned_cols=29 Identities=21% Similarity=0.213 Sum_probs=22.1
Q ss_pred HHHHHhhhhcCCCCChhHHHHHHHHHHhh
Q 010411 426 ILVGLLDMHHNGTLSFNEFTVAVRLAHEK 454 (511)
Q Consensus 426 ~l~~L~~~~~~~~~~w~~F~~~v~~~h~~ 454 (511)
.+..++|.-.+|.|+.+||...++.++..
T Consensus 99 ~~f~~~D~d~dg~i~~~E~~~~~~~~~~~ 127 (181)
T d1bjfa_ 99 WAFSMYDLDGNGYISKAEMLEIVQAIYKM 127 (181)
T ss_dssp HHHHHHCTTCSSCEEHHHHHHHHHHHHTT
T ss_pred HHHHHhccCCCCeecHHHHHHHHHHHhhh
Confidence 45555665568999999999999987653
No 8
>d1nyaa_ a.39.1.5 (A:) Calerythrin {Saccharopolyspora erythraea [TaxId: 1836]}
Probab=17.15 E-value=52 Score=25.64 Aligned_cols=30 Identities=23% Similarity=0.235 Sum_probs=22.6
Q ss_pred hHHHHHHhhhh---cCCCCChhHHHHHHHHHHh
Q 010411 424 RKILVGLLDMH---HNGTLSFNEFTVAVRLAHE 453 (511)
Q Consensus 424 rk~l~~L~~~~---~~~~~~w~~F~~~v~~~h~ 453 (511)
+++|-++|+.+ .+|.|+++||...+.++..
T Consensus 6 ~~~l~~~F~~~D~d~dG~Is~~Ef~~~l~~~~~ 38 (176)
T d1nyaa_ 6 SDRLKKRFDRWDFDGNGALERADFEKEAQHIAE 38 (176)
T ss_dssp HHHHHHHHHHCCSSCCSSBCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHHH
Confidence 34566666655 4999999999999988654
No 9
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}
Probab=15.67 E-value=30 Score=30.81 Aligned_cols=92 Identities=14% Similarity=0.203 Sum_probs=57.0
Q ss_pred hhcccccccchHHHHHHHHHHHHHhhcCCeEEEecccchhhhhhhccCCCCChhHHHHHHHHHhcCccccccccChHHHh
Q 010411 229 RVNFQGLKFTPKIETLGYELVRILQEKGPFVALHLRYEMDMLAFSGCTHGCSMGEAEELKRLRYAYPWWREKEIVSEERR 308 (511)
Q Consensus 229 rvnf~ALrF~~~I~~Lg~~lV~RLr~~G~fiAlHLR~E~DMLAfsgC~~g~~~~E~~eL~~~R~~~~~wk~k~i~~~~~R 308 (511)
.+..++|...++.+.+-+++.+.|+..|.++....-...++..+. ..+....+...+..... .-....+
T Consensus 98 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---------~~~~~~~ 166 (281)
T d2gh1a1 98 AICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYL--LDGEKQSEFIQLGVLQK---------LFESDTQ 166 (281)
T ss_dssp EEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCHHHHHTSEE--ETTSCHHHHCCHHHHHH---------HHHHHHH
T ss_pred EEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECCccccchhhc--cCchhhhhhhhHHHHHH---------HHHHHHH
Confidence 345567777778888888888889999988887765555555542 22222222211211111 0112334
Q ss_pred cCCCCCCCHHHHHHHHHHcCCCC
Q 010411 309 SQGLCPLTPEEAALVLQALGIDK 331 (511)
Q Consensus 309 ~~G~CPLTPeEvgl~LralGf~~ 331 (511)
..|.-|....++..+|+..||.+
T Consensus 167 ~~~~~~~i~~~l~~~l~eaGf~~ 189 (281)
T d2gh1a1 167 RNGKDGNIGMKIPIYLSELGVKN 189 (281)
T ss_dssp TTCCCTTGGGTHHHHHHHTTCEE
T ss_pred HcCCCCCHHHHHHHHHHHcCCeE
Confidence 56777777788899999999984
No 10
>d2g7ja1 d.198.5.1 (A:1-112) Putative cytoplasmic protein YgaC {Salmonella typhimurium [TaxId: 90371]}
Probab=15.22 E-value=30 Score=27.95 Aligned_cols=26 Identities=38% Similarity=0.694 Sum_probs=19.8
Q ss_pred CCHHHHHHHHHHcCCCCCceEEEEeccccC
Q 010411 315 LTPEEAALVLQALGIDKDTHIYIAAGEIYG 344 (511)
Q Consensus 315 LTPeEvgl~LralGf~~~T~IYlAsGeiyG 344 (511)
|-|.||+.+|+..||..+ |+ +-+.||
T Consensus 3 LRPDEVArVLe~aGF~~d---~v-t~kaYG 28 (112)
T d2g7ja1 3 LRPDEVARVLEKAGFTVD---VV-TNKTYG 28 (112)
T ss_dssp CCHHHHHHHHHHTTCEEE---EE-ETTEEE
T ss_pred cChHHHHHHHHHcCceEE---Ee-eccccc
Confidence 679999999999999744 33 345565
Done!