BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010413
(511 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HVC|A Chain A, Crystal Structure Of Human Prolyl-trna Synthetase In
Complex With Halofuginone And Atp Analogue
pdb|4HVC|B Chain B, Crystal Structure Of Human Prolyl-trna Synthetase In
Complex With Halofuginone And Atp Analogue
Length = 519
Score = 541 bits (1394), Expect = e-154, Method: Compositional matrix adjust.
Identities = 264/494 (53%), Positives = 344/494 (69%), Gaps = 15/494 (3%)
Query: 33 KKDENFGEWYSEVVVNGEMIEYYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYF 92
KK+EN +WYS+V+ EMIEY+DISGCYI+RPWA +IWE ++ FFDAEIKK+ ++NCYF
Sbjct: 26 KKEENLADWYSQVITKSEMIEYHDISGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYF 85
Query: 93 PLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHR 152
P+FVS + L+KEK H+ FAPEVAWVT+SG+++L PIAIRPTSETVMYP Y+KW++ HR
Sbjct: 86 PMFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHR 145
Query: 153 DLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYE 212
DLP+KLNQWCNVVRWEF +P PF+R+REFLWQEGH+AFAT EA +EVLQIL+LY ++YE
Sbjct: 146 DLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATMEEAAEEVLQILDLYAQVYE 205
Query: 213 EFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFEN 272
E LA+PV+KG+K+E EKFAGG YTTT+EAFI +GR IQG TSH LGQNFSKMFEI+FE+
Sbjct: 206 ELLAIPVVKGRKTEKEKFAGGDYTTTIEAFISASGRAIQGGTSHHLGQNFSKMFEIVFED 265
Query: 273 EK--GEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLXXXXXXXXXXXXXXXYKDA---- 326
K GEK A+QNSW TTRTIGVM MVHGD+ GLVL +A
Sbjct: 266 PKIPGEKQFAYQNSWGLTTRTIGVMTMVHGDNMGLVLPPRVACVQVVIIPCGITNALSEE 325
Query: 327 DTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQ 386
D + + C L I D RDNYSPGWK++HWE+KGVP+R+E+GP+D+ Q
Sbjct: 326 DKEALIAKCNDYRRRLLSVNIRVRADLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSCQ 385
Query: 387 VRAVRRDNGAKVDLPRSSLVERIKELLDEIQESLFVAAKQRRDACIQIVKTWDEFVEALG 446
AVRRD G K+ + + +++ +L++IQ +LF A + + + T ++F + L
Sbjct: 386 FVAVRRDTGEKLTVAENEAETKLQAILEDIQVTLFTRASEDLKTHMVVANTMEDFQKILD 445
Query: 447 QRKMILAPWCDEEEVE---KDVKARTKG-EMGA----AKTLCSPLEQP-EIPEGTLCFAS 497
K++ P+C E + E K AR + E GA AK+LC P + E+ G C
Sbjct: 446 SGKIVQIPFCGEIDCEDWIKKTTARDQDLEPGAPSMGAKSLCIPFKPLCELQPGAKCVCG 505
Query: 498 GKPAKRWSYWGRSY 511
PAK ++ +GRSY
Sbjct: 506 KNPAKYYTLFGRSY 519
>pdb|1H4Q|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With Trnapro(Cgg), Atp And Prolinol
pdb|1H4Q|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With Trnapro(Cgg), Atp And Prolinol
pdb|1H4S|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With Trnapro(Cgg) And A Prolyl-Adenylate Analogue
pdb|1H4S|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With Trnapro(Cgg) And A Prolyl-Adenylate Analogue
pdb|1HC7|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus
pdb|1HC7|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus
pdb|1HC7|C Chain C, Prolyl-Trna Synthetase From Thermus Thermophilus
pdb|1HC7|D Chain D, Prolyl-Trna Synthetase From Thermus Thermophilus
pdb|1H4T|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With L-Proline
pdb|1H4T|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With L-Proline
pdb|1H4T|C Chain C, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With L-Proline
pdb|1H4T|D Chain D, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With L-Proline
Length = 477
Score = 362 bits (929), Expect = e-100, Method: Compositional matrix adjust.
Identities = 194/468 (41%), Positives = 281/468 (60%), Gaps = 12/468 (2%)
Query: 34 KDENFGEWYSEVVVNGEMIEYYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFP 93
+ ++F EWY EV+ E+ +Y + G ++RP+ +IWE +Q+ D K+ QN YFP
Sbjct: 10 QSQDFSEWYLEVIQKAELADYGPVRGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFP 69
Query: 94 LFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRD 153
LF+ + L+KE +H+EGF+PE+A VT +G +LE P+A+RPTSETV+ +SKWIR RD
Sbjct: 70 LFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKWIRSWRD 129
Query: 154 LPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEE 213
LP LNQW NVVRWE PF+R+ EFLWQEGHTA AT+ EA++EV ++L +Y R+ E
Sbjct: 130 LPQLLNQWGNVVRWEMRT-RPFLRTSEFLWQEGHTAHATREEAEEEVRRMLSIYARLARE 188
Query: 214 FLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENE 273
+ A+PVI+G K+E EKFAG +YTTT+EA + + G+ +Q TSH LG+NF++ F+I F++
Sbjct: 189 YAAIPVIEGLKTEKEKFAGAVYTTTIEALMKD-GKALQAGTSHYLGENFARAFDIKFQDR 247
Query: 274 KGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLXXXXXXXXXXXXXXXYKDADTQGIFD 333
+ SW + R IG ++M HGDD+GLVL YKD + + +
Sbjct: 248 DLQVKYVHTTSWGLSWRFIGAIIMTHGDDRGLVL-PPRLAPIQVVIVPIYKDESRERVLE 306
Query: 334 ACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRD 393
A + L G+ ++D RD ++PG+K+ WE+KGVP R+E+GPKDL Q R
Sbjct: 307 AAQGLRQALLAQGLRVHLDDRDQHTPGYKFHEWELKGVPFRVELGPKDLEGGQAVLASR- 365
Query: 394 NGAKVDLPRSSLVERIKELLDEIQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILA 453
G K LP ++L E + LD E L+ A R+ + V T++ F EA+ Q LA
Sbjct: 366 LGGKETLPLAALPEALPGKLDAFHEELYRRALAFREDHTRKVDTYEAFKEAV-QEGFALA 424
Query: 454 PWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEIPEGTLCFASGKPA 501
C ++ E+ ++ T A T C P E PE C G+P+
Sbjct: 425 FHCGDKACERLIQEET-----TATTRCVPFEAE--PEEGFCVRCGRPS 465
>pdb|1NJ1|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus Bound To Cysteine
Sulfamoyl Adenylate
pdb|1NJ2|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus
pdb|1NJ5|A Chain A, Crystal Structure Of Prolyl-trna Synthetase From
Methanothermobacter Thermautotrophicus Bound To Proline
Sulfamoyl Adenylate
pdb|1NJ6|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus Bound To Alanine
Sulfamoyl Adenylate
Length = 501
Score = 266 bits (681), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 160/482 (33%), Positives = 249/482 (51%), Gaps = 18/482 (3%)
Query: 33 KKDENFGEWYSEVVVNGEMI-EYYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCY 91
+K F EW+ ++ E+I + Y + G ++ P I + K I +
Sbjct: 35 EKMTEFSEWFHNILEEAEIIDQRYPVKGMHVWMPHGFMIRKNTLKIL-RRILDRDHEEVL 93
Query: 92 FPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGH 151
FPL V L KE H++GF EV WVT G S L+ +A+RPTSETVMYP ++ W+R H
Sbjct: 94 FPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFALWVRSH 153
Query: 152 RDLPLKLNQWCNVVRWEFSNPTPFIRSREF-LWQEGHTAFATKSEADDEVLQILELYRRI 210
DLP++ Q N R+E + P IR RE ++E HT AT SEA+++V + +E+Y+
Sbjct: 154 TDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVEIYKEF 213
Query: 211 YEEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIF 270
+ L +P + ++ +KF G YT + +P+ G+ +Q T H LGQ F++ FEI F
Sbjct: 214 FNS-LGIPYLITRRPPWDKFPGSEYTVAFDTLMPD-GKTLQIGTVHNLGQTFARTFEIKF 271
Query: 271 ENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLXXXXXXXXXXXXXXXYKDADTQG 330
E +G+ Q + + R I ++ +HGD+ GL L +K A +
Sbjct: 272 ETPEGDHEYVHQTCYGLSDRVIASVIAIHGDESGLCLPPDVAAHQVVIVPIIFKKA-AEE 330
Query: 331 IFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAV 390
+ +AC L AG ++D RD G KY WEM+GVPLR+EIGP+DL K
Sbjct: 331 VMEACRELRSRLEAAGFRVHLDDRD-IRAGRKYYEWEMRGVPLRVEIGPRDLEKGAAVIS 389
Query: 391 RRDNGAKVDLPRSSLVERIKELLDEIQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKM 450
RRD G KV + E ++EL+ +I E+L A +R ++ I+ +T +E + +++
Sbjct: 390 RRDTGEKVTADLQGIEETLRELMKDILENLRTRAWERMESEIREAETLEEASRIVDEKRG 449
Query: 451 ILA-PWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEIPEGTLCFASGKPAKRWSYWGR 509
I++ WC EEE DV+ + + ++ + S GT C G+ A +Y R
Sbjct: 450 IISFMWCGEEECGMDVEEKVRVDILGIQEEGS---------GT-CINCGREAPYRAYLAR 499
Query: 510 SY 511
+Y
Sbjct: 500 TY 501
>pdb|1NJ8|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
Methanocaldococcus Janaschii
pdb|1NJ8|B Chain B, Crystal Structure Of Prolyl-Trna Synthetase From
Methanocaldococcus Janaschii
pdb|1NJ8|C Chain C, Crystal Structure Of Prolyl-Trna Synthetase From
Methanocaldococcus Janaschii
pdb|1NJ8|D Chain D, Crystal Structure Of Prolyl-Trna Synthetase From
Methanocaldococcus Janaschii
Length = 459
Score = 258 bits (660), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 145/423 (34%), Positives = 235/423 (55%), Gaps = 10/423 (2%)
Query: 38 FGEWYSEVVVNGEMIEY-YDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFV 96
F EWYS+++ E+ + Y I GC + P+ I + + + FP+ +
Sbjct: 7 FSEWYSDILEKAEIYDVRYPIKGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLI 66
Query: 97 SPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPL 156
+L KE +HI+GF EV WVT G++ L+V +A+RPTSET +Y W++ H DLP+
Sbjct: 67 PEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPI 126
Query: 157 KLNQWCNVVRWEFSNPTPFIRSREFL-WQEGHTAFATKSEADDEVLQILELYRRIYEEFL 215
K+ Q N R+E + P IR RE + ++E HTA +TK EA+++V + + +Y++ ++ L
Sbjct: 127 KIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAISIYKKFFDT-L 185
Query: 216 AVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKG 275
+P + K+ E +KF G YT + P+ GR +Q AT H LGQNFSK FEIIFE G
Sbjct: 186 GIPYLISKRPEWDKFPGAEYTMAFDTIFPD-GRTMQIATVHNLGQNFSKTFEIIFETPTG 244
Query: 276 EKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLXXXXXXXXXXXXXXXYKDADTQGIFDAC 335
+K A+Q + + R I ++ +HGD+KGL+L +K + + +
Sbjct: 245 DKDYAYQTCYGISDRVIASIIAIHGDEKGLILPPIVAPIQVVIVPLIFKGKE-DIVMEKA 303
Query: 336 TATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNG 395
E L + ++D RD PG K++ WE+KGVPLRIE+GPKD+ ++ RRD
Sbjct: 304 KEIYEKL-KGKFRVHIDDRD-IRPGRKFNDWEIKGVPLRIEVGPKDIENKKITLFRRDTM 361
Query: 396 AKVDLPRSSLVERIKELLDEIQESLFVAAKQRRDACIQIVKTW--DEFVEALGQRK-MIL 452
K + + L+E +++ L+ I E++ A ++ + I I++ DE L +++ +IL
Sbjct: 362 EKFQVDETQLMEVVEKTLNNIMENIKNRAWEKFENFITILEDINPDEIKNILSEKRGVIL 421
Query: 453 APW 455
P+
Sbjct: 422 VPF 424
>pdb|3IAL|A Chain A, Giardia Lamblia Prolyl-Trna Synthetase In Complex With
Prolyl- Adenylate
pdb|3IAL|B Chain B, Giardia Lamblia Prolyl-Trna Synthetase In Complex With
Prolyl- Adenylate
Length = 518
Score = 222 bits (565), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 156/512 (30%), Positives = 245/512 (47%), Gaps = 45/512 (8%)
Query: 33 KKDENFGEWYSEVVVNGEMIEY-YDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCY 91
K + F +W+ ++ E+++ Y + GC + RP+ + + + + E K+ I
Sbjct: 19 KTRDTFADWFDAIMDAAELVDRRYPVKGCVVFRPYGFFMENAIMRLCEEEYAKVGISQIL 78
Query: 92 FPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGH 151
FP + + L+KE DHI+GF E WV K G LE +A+RPTSET +Y +SKW+R +
Sbjct: 79 FPTVIPESFLKKESDHIKGFEAECFWVEKGGLQPLEERLALRPTSETAIYSMFSKWVRSY 138
Query: 152 RDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIY 211
+DLPLK++Q C + R E N P IR RE W E H AT A+D V Q+ + ++ I
Sbjct: 139 KDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHAT---AEDAVSQLSDYWKVID 195
Query: 212 EEFLAVPVIKGKKSEL---EKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEI 268
F KG+K ++F G Y+ + +P GR +Q A H LGQ FS F+I
Sbjct: 196 TIFSDELCFKGQKLRRVCWDRFPGADYSEVSDVVMP-CGRVLQTAGIHNLGQRFSSTFDI 254
Query: 269 IFENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLXXXXXXXXXXXX-----XXXY 323
++ N+ E + +TR + + +HGD GLVL
Sbjct: 255 LYANKANESVHPYLTCAGISTRVLACALSIHGDSGGLVLPPLIAPIHVVIIPIGCGKKNN 314
Query: 324 KDADTQGIFDACTATVETL-CEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDL 382
+++D Q + +TL + G+ ++D + S G K ++E+KGVPLRIE+G +DL
Sbjct: 315 QESDQQ-VLGKVNEIADTLKSKLGLRVSIDDDFSKSMGDKLYYYELKGVPLRIEVGQRDL 373
Query: 383 AKNQVRAVRRDNG--AKVDLPRSSLVE---------------RIKELLDEIQESLFVAAK 425
A Q V RD G K +P + +++ IK+ LD + L A
Sbjct: 374 ANGQCIVVPRDVGKDQKRVIPITEVMKVSSHTTENHELVVKNVIKDELDAYKARLKEKAF 433
Query: 426 QRRDACIQIVKTWDEFVEALGQRKMILAPW------CDEEEVEKDVKARTKGEMGAAKTL 479
++ + K++DE V + + K LA + D E +K +K E+
Sbjct: 434 AFHNSMVTNCKSFDEIVACI-ENKGGLARFPFYTTEADGEVWDKKLKDACSAEIRGH--- 489
Query: 480 CSPLEQPEIPEGTLCFASGKPAKRWSYWGRSY 511
+P E + G +C SGKPA + Y +SY
Sbjct: 490 -NPDEN--VLPGEVCALSGKPAVCYMYCAKSY 518
>pdb|2I4L|A Chain A, Rhodopseudomonas Palustris Prolyl-trna Synthetase
pdb|2I4L|B Chain B, Rhodopseudomonas Palustris Prolyl-trna Synthetase
pdb|2I4L|C Chain C, Rhodopseudomonas Palustris Prolyl-trna Synthetase
pdb|2I4M|A Chain A, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Proams
pdb|2I4M|B Chain B, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Proams
pdb|2I4M|C Chain C, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Proams
pdb|2I4N|A Chain A, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Cysams
pdb|2I4N|B Chain B, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Cysams
pdb|2I4N|C Chain C, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Cysams
pdb|2I4O|A Chain A, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Atp
pdb|2I4O|B Chain B, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Atp
pdb|2I4O|C Chain C, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Atp
Length = 458
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 79/414 (19%), Positives = 150/414 (36%), Gaps = 75/414 (18%)
Query: 58 SGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAW 117
+G Y P + + +++ E + P + L +E + + PE+
Sbjct: 57 AGIYAWLPLGHRVLKKIEQIVREEQNRAGAIELLMPT-LQLADLWRESGRYDAYGPEMLR 115
Query: 118 VTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPT---- 173
+ + +L PT+E ++ + +I+ ++ LPL L ++W+F +
Sbjct: 116 IADRHKREL----LYGPTNEEMITEIFRAYIKSYKSLPLNLYH----IQWKFRDEQRPRF 167
Query: 174 PFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEE--FLAVPV------IKGKKS 225
+R REFL ++ ++ ++ A ++ Y R + A+P+ I G S
Sbjct: 168 GVMRGREFLMKDAYSFDVDEAGARKSYNKMFVAYLRTFARMGLKAIPMRAETGPIGGDLS 227
Query: 226 E-----LEKFAGGLYT---------------------------TTV-------------E 240
E G+Y T+V E
Sbjct: 228 HEFIVLAETGESGVYIDRDVLNLPVPDENVDYDGDLTPIIKQWTSVYAATEDVHEPARYE 287
Query: 241 AFIPNTGR----GIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAY-TTRTIGVM 295
+ +P R GI+ G +S + G A S+ +R +G +
Sbjct: 288 SEVPEANRLNTRGIEVGQIFYFGTKYSDSMKANVTGPDGTDAPIHGGSYGVGVSRLLGAI 347
Query: 296 VMVHGDDKGLVLXXXXXXXXXXXXXXXYKDADTQGIFDACTATVETLCEAGICANMDSRD 355
+ DD G++ DA T AC L G+ D D
Sbjct: 348 IEACHDDNGIIWPEAVAPFRVTILNLKQGDAATDA---ACDQLYRELSAKGVDVLYDDTD 404
Query: 356 NYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERI 409
+ G K++ ++ G+P +I +GP+ LA+ +V RR +GA+ +L + +V R+
Sbjct: 405 QRA-GAKFATADLIGIPWQIHVGPRGLAEGKVELKRRSDGARENLALADVVARL 457
>pdb|2J3L|A Chain A, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With A Prolyl-Adenylate Analogue
('5'-O-(N-(L-Prolyl)- Sulfamoyl)adenosine)
pdb|2J3L|B Chain B, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With A Prolyl-Adenylate Analogue
('5'-O-(N-(L-Prolyl)- Sulfamoyl)adenosine)
pdb|2J3M|A Chain A, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With Atp, Manganese And Prolinol
pdb|2J3M|B Chain B, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With Atp, Manganese And Prolinol
Length = 572
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 67/164 (40%), Gaps = 9/164 (5%)
Query: 58 SGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAW 117
+G Y P A + E ++ E +K+ P + P L KE E + P +
Sbjct: 37 AGIYSYLPLANRVLEKLKTIMREEFEKIDAVEMLMPALL-PAELWKESGRYETYGPNLYR 95
Query: 118 VTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIR 177
+ + D + PT E I ++ LPL L Q R E + + +R
Sbjct: 96 LKDRNDRDY----ILGPTHEETFTELIRDEINSYKRLPLNLYQIQTKYRDEKRSRSGLLR 151
Query: 178 SREFLWQEGHTAFATKSEADDEVLQILELYRRIYE----EFLAV 217
REF+ ++G++ A ++ D + Y RI+E EF A+
Sbjct: 152 GREFIMKDGYSFHADEASLDQSYRDYEKAYSRIFERCGLEFRAI 195
>pdb|3UGQ|A Chain A, Crystal Structure Of The Apo Form Of The Yeast
Mitochondrial Threonyl- Trna Synthetase Determined At
2.1 Angstrom Resolution
pdb|3UGT|A Chain A, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UGT|B Chain B, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UGT|C Chain C, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UGT|D Chain D, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UH0|A Chain A, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Threonyl Sulfamoyl
Adenylate
pdb|4EO4|A Chain A, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
pdb|4EO4|B Chain B, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
pdb|4EO4|C Chain C, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
pdb|4EO4|D Chain D, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
Length = 460
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 75/168 (44%), Gaps = 13/168 (7%)
Query: 63 IRPWAMSIWETMQKFFDAEIKKMKIQNCY---FPLFVSPTVLQK----EKDHIEGFAPEV 115
+ P +M K F+ I+ MK+Q + F V+P + +K + H E +A ++
Sbjct: 52 LSPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWENYADDM 111
Query: 116 AWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNP-TP 174
V + E E ++P + + K R + +LPL+ + + + R E S +
Sbjct: 112 FKVETTDEEKEEY--GLKPMNCPGHCLIFGKKDRSYNELPLRFSDFSPLHRNEASGALSG 169
Query: 175 FIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKG 222
R R+F +GH F T S+ E+ L+L +Y + P +KG
Sbjct: 170 LTRLRKFHQDDGHI-FCTPSQVKSEIFNSLKLIDIVYNKIF--PFVKG 214
>pdb|1QF6|A Chain A, Structure Of E. Coli Threonyl-Trna Synthetase Complexed
With Its Cognate Trna
Length = 642
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 69/147 (46%), Gaps = 8/147 (5%)
Query: 69 SIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEV 128
+I+ ++ F +++K+ + Q P F+ VL ++ H + + A T S E+
Sbjct: 272 TIFRELEVFVRSKLKEYQYQEVKGP-FMMDRVLWEKTGHWDNYKD--AMFTTSSENR--- 325
Query: 129 PIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTP-FIRSREFLWQEGH 187
I+P + +++ ++ +RDLPL++ ++ + R E S +R R F + H
Sbjct: 326 EYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAH 385
Query: 188 TAFATKSEADDEVLQILELYRRIYEEF 214
F T+ + DEV + L +Y F
Sbjct: 386 I-FCTEEQIRDEVNGCIRLVYDMYSTF 411
>pdb|1EVK|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With The Ligand Threonine
pdb|1EVK|B Chain B, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With The Ligand Threonine
pdb|1EVL|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With A Threonyl Adenylate Analog
pdb|1EVL|B Chain B, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With A Threonyl Adenylate Analog
pdb|1EVL|C Chain C, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With A Threonyl Adenylate Analog
pdb|1EVL|D Chain D, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With A Threonyl Adenylate Analog
pdb|1FYF|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase Complexed With A Seryl Adenylate Analog
pdb|1FYF|B Chain B, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase Complexed With A Seryl Adenylate Analog
pdb|1KOG|A Chain A, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|B Chain B, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|C Chain C, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|D Chain D, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|E Chain E, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|F Chain F, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|G Chain G, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|H Chain H, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
Length = 401
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 69/147 (46%), Gaps = 8/147 (5%)
Query: 69 SIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEV 128
+I+ ++ F +++K+ + Q P F+ VL ++ H + + A T S E+
Sbjct: 31 TIFRELEVFVRSKLKEYQYQEVKGP-FMMDRVLWEKTGHWDNYKD--AMFTTSSENR--- 84
Query: 129 PIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTP-FIRSREFLWQEGH 187
I+P + +++ ++ +RDLPL++ ++ + R E S +R R F + H
Sbjct: 85 EYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAH 144
Query: 188 TAFATKSEADDEVLQILELYRRIYEEF 214
F T+ + DEV + L +Y F
Sbjct: 145 I-FCTEEQIRDEVNGCIRLVYDMYSTF 170
>pdb|1NYQ|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With An Analogue Of Threonyl
Adenylate
pdb|1NYQ|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With An Analogue Of Threonyl
Adenylate
pdb|1NYR|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With Atp
pdb|1NYR|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With Atp
Length = 645
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 332 FDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQV 387
+D + L G+ ++D R N G+K +M+ +P +I +G K++ NQV
Sbjct: 559 YDYARQLQDELKSQGVRVSIDDR-NEKMGYKIREAQMQKIPYQIVVGDKEVENNQV 613
>pdb|3HZQ|A Chain A, Structure Of A Tetrameric Mscl In An Expanded Intermediate
State
Length = 114
Score = 32.3 bits (72), Expect = 0.64, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 473 MGAA--KTLCSPLEQPEIPEGTLCFASGKPAKRWSYWGRSY 511
MGAA K +CS +E +P F S AK WS+WG Y
Sbjct: 43 MGAAFNKIICSLVENIIMPLIGKIFGSVDFAKEWSFWGIKY 83
>pdb|4G85|A Chain A, Crystal Structure Of Human Hisrs
pdb|4G85|B Chain B, Crystal Structure Of Human Hisrs
Length = 517
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%)
Query: 339 VETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKV 398
V L +AGI A + + N + + E G+PL IG ++L ++ + +V
Sbjct: 439 VSELWDAGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEV 498
Query: 399 DLPRSSLVERIK 410
D+ R LVE IK
Sbjct: 499 DVRREDLVEEIK 510
>pdb|4G84|A Chain A, Crystal Structure Of Human Hisrs
pdb|4G84|B Chain B, Crystal Structure Of Human Hisrs
Length = 464
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%)
Query: 339 VETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKV 398
V L +AGI A + + N + + E G+PL IG ++L ++ + +V
Sbjct: 386 VSELWDAGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEV 445
Query: 399 DLPRSSLVERIK 410
D+ R LVE IK
Sbjct: 446 DVRREDLVEEIK 457
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,296,937
Number of Sequences: 62578
Number of extensions: 625413
Number of successful extensions: 1491
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1459
Number of HSP's gapped (non-prelim): 27
length of query: 511
length of database: 14,973,337
effective HSP length: 103
effective length of query: 408
effective length of database: 8,527,803
effective search space: 3479343624
effective search space used: 3479343624
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)