Query 010413
Match_columns 511
No_of_seqs 309 out of 2185
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 00:14:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010413.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010413hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4163 Prolyl-tRNA synthetase 100.0 1E-130 3E-135 977.5 39.8 498 12-511 42-551 (551)
2 PRK08661 prolyl-tRNA synthetas 100.0 2E-113 5E-118 917.8 30.2 467 33-511 9-477 (477)
3 TIGR00408 proS_fam_I prolyl-tR 100.0 5E-113 1E-117 913.0 28.7 468 33-511 3-472 (472)
4 COG0442 ProS Prolyl-tRNA synth 100.0 3.4E-85 7.3E-90 688.9 23.1 470 31-511 11-499 (500)
5 PRK14799 thrS threonyl-tRNA sy 100.0 3.4E-74 7.4E-79 618.9 16.0 382 14-415 101-533 (545)
6 PLN02837 threonine-tRNA ligase 100.0 6.6E-73 1.4E-77 621.9 16.4 382 13-415 179-610 (614)
7 PRK12325 prolyl-tRNA synthetas 100.0 8.3E-71 1.8E-75 584.6 18.9 361 34-410 16-438 (439)
8 PRK12444 threonyl-tRNA synthet 100.0 1E-68 2.2E-73 594.4 17.7 379 16-414 210-636 (639)
9 PLN02908 threonyl-tRNA synthet 100.0 9.1E-68 2E-72 588.3 17.5 379 16-415 257-684 (686)
10 PRK09194 prolyl-tRNA synthetas 100.0 3E-67 6.5E-72 573.9 19.7 357 43-410 23-561 (565)
11 TIGR00409 proS_fam_II prolyl-t 100.0 3.9E-67 8.4E-72 569.3 19.6 357 43-410 23-566 (568)
12 PRK03991 threonyl-tRNA synthet 100.0 1.4E-66 3E-71 567.6 17.5 356 44-415 201-594 (613)
13 COG0441 ThrS Threonyl-tRNA syn 100.0 1.5E-66 3.2E-71 557.0 16.0 382 15-416 154-583 (589)
14 PRK12305 thrS threonyl-tRNA sy 100.0 1.5E-65 3.2E-70 563.8 16.8 380 16-415 141-571 (575)
15 TIGR00418 thrS threonyl-tRNA s 100.0 1.9E-64 4.2E-69 553.8 17.2 375 17-411 136-561 (563)
16 PRK00413 thrS threonyl-tRNA sy 100.0 7.9E-61 1.7E-65 532.6 19.1 382 16-416 206-635 (638)
17 KOG1637 Threonyl-tRNA syntheta 100.0 1.2E-60 2.6E-65 481.2 9.7 363 29-412 141-554 (560)
18 cd00778 ProRS_core_arch_euk Pr 100.0 9.7E-58 2.1E-62 453.9 11.6 259 37-297 1-260 (261)
19 cd00772 ProRS_core Prolyl-tRNA 100.0 4.5E-56 9.8E-61 442.0 15.2 259 37-297 1-263 (264)
20 PRK04173 glycyl-tRNA synthetas 100.0 6.5E-56 1.4E-60 471.0 12.4 344 56-412 26-455 (456)
21 cd00862 ProRS_anticodon_zinc P 100.0 1.2E-54 2.5E-59 415.3 18.3 202 304-511 1-202 (202)
22 cd00779 ProRS_core_prok Prolyl 100.0 1.9E-52 4.1E-57 414.6 11.8 247 43-298 7-255 (255)
23 cd00771 ThrRS_core Threonyl-tR 100.0 1.4E-52 3.1E-57 424.5 10.3 257 44-313 4-298 (298)
24 KOG2324 Prolyl-tRNA synthetase 100.0 2.5E-49 5.5E-54 388.2 14.1 355 42-408 27-425 (457)
25 PRK05431 seryl-tRNA synthetase 100.0 5.3E-50 1.2E-54 422.3 8.9 290 15-315 113-416 (425)
26 cd00770 SerRS_core Seryl-tRNA 100.0 1.4E-49 3E-54 402.2 9.6 281 23-314 3-296 (297)
27 TIGR00414 serS seryl-tRNA synt 100.0 2.4E-49 5.3E-54 416.4 8.5 288 16-314 117-417 (418)
28 COG0124 HisS Histidyl-tRNA syn 100.0 2.6E-48 5.5E-53 404.5 10.2 335 53-412 3-427 (429)
29 PRK00960 seryl-tRNA synthetase 100.0 1.2E-45 2.5E-50 391.4 10.6 288 14-314 173-503 (517)
30 CHL00201 syh histidine-tRNA sy 100.0 3E-44 6.4E-49 381.0 12.7 337 54-416 4-421 (430)
31 PLN02678 seryl-tRNA synthetase 100.0 2.1E-44 4.6E-49 378.0 10.9 292 14-315 117-424 (448)
32 TIGR00415 serS_MJ seryl-tRNA s 100.0 2.5E-44 5.3E-49 375.7 10.9 267 24-302 181-492 (520)
33 PRK14894 glycyl-tRNA synthetas 100.0 3E-42 6.6E-47 357.8 15.3 349 55-413 27-537 (539)
34 TIGR00389 glyS_dimeric glycyl- 100.0 2.8E-41 6E-46 360.5 15.6 355 44-412 8-550 (551)
35 PLN02320 seryl-tRNA synthetase 100.0 3.4E-41 7.4E-46 355.2 10.9 288 16-315 178-491 (502)
36 PLN02734 glycyl-tRNA synthetas 100.0 1.4E-40 3E-45 359.7 15.8 361 38-414 74-662 (684)
37 PLN02530 histidine-tRNA ligase 100.0 8.2E-41 1.8E-45 359.5 11.0 328 50-405 66-486 (487)
38 COG0423 GRS1 Glycyl-tRNA synth 100.0 2E-39 4.4E-44 335.0 15.3 349 56-415 28-553 (558)
39 PRK00037 hisS histidyl-tRNA sy 100.0 1.6E-39 3.5E-44 344.1 10.5 328 52-413 2-411 (412)
40 COG0172 SerS Seryl-tRNA synthe 100.0 1.2E-38 2.5E-43 328.7 9.7 288 15-314 115-418 (429)
41 PRK12420 histidyl-tRNA synthet 100.0 3.5E-36 7.7E-41 319.2 11.1 322 52-405 2-422 (423)
42 PLN02972 Histidyl-tRNA synthet 100.0 1.3E-35 2.8E-40 325.0 13.7 331 55-414 328-761 (763)
43 TIGR00442 hisS histidyl-tRNA s 100.0 6.6E-35 1.4E-39 307.4 11.6 314 56-395 2-397 (397)
44 KOG2509 Seryl-tRNA synthetase 100.0 8.1E-35 1.8E-39 294.1 5.9 291 15-315 129-433 (455)
45 cd00670 Gly_His_Pro_Ser_Thr_tR 100.0 4.8E-34 1E-38 279.4 10.6 226 67-296 1-235 (235)
46 KOG1936 Histidyl-tRNA syntheta 100.0 4.9E-33 1.1E-37 279.4 9.5 337 51-414 57-516 (518)
47 PF00587 tRNA-synt_2b: tRNA sy 100.0 2.6E-32 5.5E-37 255.4 8.7 169 70-245 1-172 (173)
48 KOG2298 Glycyl-tRNA synthetase 100.0 9.4E-30 2E-34 257.9 8.4 351 55-415 33-594 (599)
49 PRK12292 hisZ ATP phosphoribos 99.9 3.3E-27 7.2E-32 248.0 10.5 285 55-371 4-378 (391)
50 cd00774 GlyRS-like_core Glycyl 99.9 1.4E-25 2.9E-30 222.5 8.4 156 45-216 4-167 (254)
51 PRK12421 ATP phosphoribosyltra 99.9 1.6E-24 3.4E-29 227.3 13.8 266 55-355 8-366 (392)
52 cd02426 Pol_gamma_b_Cterm C-te 99.9 9.6E-25 2.1E-29 193.6 9.1 116 296-414 10-127 (128)
53 PF09180 ProRS-C_1: Prolyl-tRN 99.9 2.8E-24 6E-29 168.9 4.5 68 438-511 1-68 (68)
54 TIGR00443 hisZ_biosyn_reg ATP 99.8 3.8E-20 8.2E-25 189.2 8.8 141 61-215 1-141 (314)
55 cd00773 HisRS-like_core Class 99.8 2.3E-19 5.1E-24 178.7 9.8 135 68-215 2-136 (261)
56 cd00768 class_II_aaRS-like_cor 99.8 6E-19 1.3E-23 168.7 10.7 208 70-291 1-211 (211)
57 PRK12293 hisZ ATP phosphoribos 99.8 9.6E-19 2.1E-23 175.6 8.7 137 53-215 4-140 (281)
58 PF13393 tRNA-synt_His: Histid 99.7 3.3E-18 7.2E-23 174.6 8.9 142 59-215 1-143 (311)
59 cd00858 GlyRS_anticodon GlyRS 99.7 6.6E-18 1.4E-22 148.8 8.3 103 305-413 18-120 (121)
60 PF03129 HGTP_anticodon: Antic 99.7 4.2E-18 9E-23 143.0 4.7 93 315-411 1-93 (94)
61 COG0442 ProS Prolyl-tRNA synth 99.7 5.4E-18 1.2E-22 179.9 5.4 157 248-409 340-498 (500)
62 cd00861 ProRS_anticodon_short 99.7 4.1E-17 8.8E-22 136.7 8.5 93 313-409 1-93 (94)
63 PRK14938 Ser-tRNA(Thr) hydrola 99.7 1.1E-17 2.3E-22 170.4 3.1 116 288-410 249-364 (387)
64 PRK12295 hisZ ATP phosphoribos 99.7 1.5E-16 3.3E-21 165.6 8.6 128 71-216 7-135 (373)
65 cd00860 ThrRS_anticodon ThrRS 99.6 3.9E-15 8.4E-20 123.6 6.2 90 313-409 1-90 (91)
66 COG3705 HisZ ATP phosphoribosy 99.5 9.6E-15 2.1E-19 150.4 6.3 146 55-215 4-149 (390)
67 cd00738 HGTP_anticodon HGTP an 99.5 4.5E-14 9.7E-19 117.8 6.8 92 313-408 1-92 (94)
68 PRK07080 hypothetical protein; 99.4 2.3E-13 5.1E-18 135.3 7.3 252 39-309 19-308 (317)
69 TIGR02367 PylS pyrrolysyl-tRNA 99.4 4.4E-13 9.6E-18 139.1 8.0 136 67-221 238-375 (453)
70 PRK09537 pylS pyrolysyl-tRNA s 99.3 2.8E-12 6E-17 133.6 7.0 147 71-242 206-354 (417)
71 PRK12294 hisZ ATP phosphoribos 99.2 3.5E-11 7.7E-16 120.1 7.8 124 68-215 7-130 (272)
72 cd00859 HisRS_anticodon HisRS 99.1 5.2E-11 1.1E-15 97.9 5.2 88 315-409 3-90 (91)
73 PRK04172 pheS phenylalanyl-tRN 99.0 2E-10 4.3E-15 124.3 5.8 142 57-215 222-402 (489)
74 PTZ00326 phenylalanyl-tRNA syn 98.9 6.2E-09 1.3E-13 110.8 9.1 184 57-255 218-445 (494)
75 PRK09350 poxB regulator PoxA; 98.8 1.3E-08 2.9E-13 103.6 7.3 119 67-204 4-124 (306)
76 cd00669 Asp_Lys_Asn_RS_core As 98.5 1.6E-07 3.5E-12 94.0 7.1 113 69-204 2-115 (269)
77 PF01409 tRNA-synt_2d: tRNA sy 98.2 1.8E-06 3.8E-11 85.3 4.9 201 67-292 15-224 (247)
78 cd00776 AsxRS_core Asx tRNA sy 98.1 4.4E-06 9.6E-11 85.9 7.3 114 67-204 23-137 (322)
79 cd00777 AspRS_core Asp tRNA sy 98.1 6.6E-06 1.4E-10 82.9 7.2 114 69-204 2-115 (280)
80 COG0016 PheS Phenylalanyl-tRNA 98.0 2.6E-05 5.6E-10 79.4 9.2 203 57-292 100-313 (335)
81 TIGR00462 genX lysyl-tRNA synt 98.0 1.9E-05 4.2E-10 80.5 8.3 117 69-204 2-119 (304)
82 PRK06462 asparagine synthetase 97.9 2.9E-05 6.2E-10 80.3 8.7 123 67-204 29-151 (335)
83 PF00152 tRNA-synt_2: tRNA syn 97.9 2.8E-05 6.2E-10 80.4 7.6 120 67-204 21-140 (335)
84 TIGR00458 aspS_arch aspartyl-t 97.8 4.1E-05 9E-10 81.7 7.7 115 66-204 131-246 (428)
85 cd00775 LysRS_core Lys_tRNA sy 97.8 6.8E-05 1.5E-09 77.4 8.9 114 68-204 8-122 (329)
86 TIGR00459 aspS_bact aspartyl-t 97.8 5.4E-05 1.2E-09 83.2 8.2 122 67-214 137-259 (583)
87 PLN02903 aminoacyl-tRNA ligase 97.8 8.2E-05 1.8E-09 82.3 8.9 123 66-214 201-325 (652)
88 PRK05159 aspC aspartyl-tRNA sy 97.8 0.00011 2.5E-09 78.6 9.7 115 66-204 134-250 (437)
89 PRK00488 pheS phenylalanyl-tRN 97.7 6.2E-05 1.3E-09 77.0 7.3 140 52-214 93-236 (339)
90 COG2269 Truncated, possibly in 97.7 3.2E-05 7E-10 75.9 4.8 121 68-205 16-136 (322)
91 COG0173 AspS Aspartyl-tRNA syn 97.7 3.3E-05 7E-10 82.3 5.1 123 67-215 140-263 (585)
92 PTZ00417 lysine-tRNA ligase; P 97.7 0.00011 2.3E-09 80.9 8.9 115 67-204 252-367 (585)
93 PRK00484 lysS lysyl-tRNA synth 97.7 0.00011 2.4E-09 79.7 9.0 116 66-204 170-286 (491)
94 TIGR00499 lysS_bact lysyl-tRNA 97.7 0.00013 2.9E-09 79.1 9.4 115 67-204 171-286 (496)
95 PTZ00385 lysyl-tRNA synthetase 97.7 0.00014 2.9E-09 80.6 9.5 116 67-204 232-347 (659)
96 PRK00476 aspS aspartyl-tRNA sy 97.7 8.9E-05 1.9E-09 81.9 7.8 122 67-214 140-262 (588)
97 TIGR00457 asnS asparaginyl-tRN 97.7 0.00014 3E-09 78.2 8.8 119 67-204 135-257 (453)
98 PLN02502 lysyl-tRNA synthetase 97.7 0.00017 3.6E-09 79.0 9.4 114 68-204 229-343 (553)
99 COG0017 AsnS Aspartyl/asparagi 97.6 0.0002 4.4E-09 75.2 9.1 114 67-204 133-246 (435)
100 PRK12820 bifunctional aspartyl 97.6 0.00017 3.7E-09 80.6 9.1 122 66-212 154-275 (706)
101 PRK03932 asnC asparaginyl-tRNA 97.6 0.00013 2.8E-09 78.5 7.6 119 67-204 132-254 (450)
102 PRK12445 lysyl-tRNA synthetase 97.6 0.00015 3.3E-09 78.7 7.3 114 67-204 183-298 (505)
103 PLN02853 Probable phenylalanyl 97.5 0.00025 5.4E-09 75.8 8.6 172 67-254 219-429 (492)
104 PLN02603 asparaginyl-tRNA synt 97.5 0.00024 5.2E-09 77.9 8.6 122 68-203 226-367 (565)
105 TIGR00468 pheS phenylalanyl-tR 97.5 0.00018 3.8E-09 73.1 6.4 140 52-215 57-202 (294)
106 PLN02850 aspartate-tRNA ligase 97.5 0.00025 5.5E-09 77.4 7.3 114 68-204 225-339 (530)
107 PRK02983 lysS lysyl-tRNA synth 97.4 0.00038 8.1E-09 82.1 8.7 114 68-204 770-884 (1094)
108 KOG2411 Aspartyl-tRNA syntheta 97.4 9.1E-05 2E-09 77.5 2.8 116 67-204 177-293 (628)
109 TIGR00470 sepS O-phosphoseryl- 97.4 0.00018 4E-09 75.7 4.6 80 129-216 182-261 (533)
110 PLN02221 asparaginyl-tRNA synt 97.3 0.00065 1.4E-08 74.6 8.8 33 67-99 170-202 (572)
111 PLN02532 asparagine-tRNA synth 97.3 0.00068 1.5E-08 74.8 8.5 33 67-99 234-266 (633)
112 PTZ00401 aspartyl-tRNA synthet 97.3 0.00071 1.5E-08 74.1 8.5 115 67-204 212-327 (550)
113 PTZ00425 asparagine-tRNA ligas 97.3 0.00096 2.1E-08 73.2 9.2 34 66-99 213-246 (586)
114 cd00496 PheRS_alpha_core Pheny 97.2 0.00092 2E-08 64.9 7.3 121 71-215 3-132 (218)
115 PF12745 HGTP_anticodon2: Anti 97.1 0.001 2.2E-08 66.6 6.7 97 314-416 6-109 (273)
116 KOG1885 Lysyl-tRNA synthetase 96.5 0.0034 7.3E-08 65.7 4.9 107 68-196 225-331 (560)
117 KOG0554 Asparaginyl-tRNA synth 96.2 0.012 2.5E-07 60.7 6.7 108 66-193 130-241 (446)
118 KOG1035 eIF-2alpha kinase GCN2 96.1 0.01 2.2E-07 68.9 6.6 133 61-213 925-1058(1351)
119 COG1190 LysU Lysyl-tRNA synthe 96.1 0.017 3.6E-07 61.6 7.7 117 68-213 180-296 (502)
120 KOG0556 Aspartyl-tRNA syntheta 95.6 0.017 3.8E-07 59.5 5.4 102 68-192 228-329 (533)
121 KOG2784 Phenylalanyl-tRNA synt 94.7 0.093 2E-06 53.6 7.4 166 71-256 214-422 (483)
122 KOG0555 Asparaginyl-tRNA synth 94.6 0.053 1.2E-06 55.9 5.2 120 68-213 243-365 (545)
123 PRK09616 pheT phenylalanyl-tRN 94.1 0.12 2.5E-06 57.3 7.1 131 67-215 357-490 (552)
124 COG2024 Phenylalanyl-tRNA synt 93.3 0.043 9.3E-07 56.3 1.8 36 67-103 46-81 (536)
125 cd00769 PheRS_beta_core Phenyl 90.6 0.22 4.7E-06 47.5 3.1 88 72-168 3-91 (198)
126 PLN02788 phenylalanine-tRNA sy 89.3 0.9 2E-05 48.0 6.7 108 65-190 64-179 (402)
127 PF09181 ProRS-C_2: Prolyl-tRN 87.4 0.77 1.7E-05 35.0 3.4 53 438-511 15-68 (68)
128 PRK06253 O-phosphoseryl-tRNA s 84.3 0.79 1.7E-05 49.7 3.1 39 129-168 183-221 (529)
129 TIGR00471 pheT_arch phenylalan 76.3 2.7 6E-05 46.6 4.1 131 67-215 360-492 (551)
130 PLN02265 probable phenylalanyl 73.0 3.7 7.9E-05 46.0 4.0 93 68-167 396-489 (597)
131 COG1592 Rubrerythrin [Energy p 68.7 7.4 0.00016 36.1 4.3 51 413-506 114-164 (166)
132 TIGR00469 pheS_mito phenylalan 62.9 15 0.00033 39.5 5.9 107 72-191 45-166 (460)
133 COG0072 PheT Phenylalanyl-tRNA 62.2 6.5 0.00014 44.6 3.2 93 67-168 349-442 (650)
134 CHL00192 syfB phenylalanyl-tRN 52.8 12 0.00027 42.7 3.5 86 67-166 396-481 (704)
135 cd05569 PTS_IIB_fructose PTS_I 47.1 1.2E+02 0.0026 25.2 7.8 78 331-414 14-92 (96)
136 PRK00629 pheT phenylalanyl-tRN 44.8 21 0.00045 41.5 3.7 91 67-167 485-576 (791)
137 PRK10427 putative PTS system f 41.8 1.8E+02 0.0038 25.2 8.2 81 332-417 19-100 (114)
138 PHA02278 thioredoxin-like prot 40.4 21 0.00046 30.1 2.2 25 436-460 2-30 (103)
139 COG1852 Uncharacterized conser 38.2 27 0.00058 33.1 2.6 30 438-467 79-109 (209)
140 TIGR00472 pheT_bact phenylalan 34.9 35 0.00077 39.7 3.6 89 71-166 493-581 (798)
141 PF10367 Vps39_2: Vacuolar sor 34.8 66 0.0014 26.7 4.4 23 475-502 67-89 (109)
142 PRK10474 putative PTS system f 31.3 1.8E+02 0.004 23.7 6.3 78 335-417 3-81 (88)
143 TIGR00106 uncharacterized prot 26.9 1.1E+02 0.0025 25.6 4.4 38 315-355 4-41 (97)
144 PF14116 YyzF: YyzF-like prote 26.5 36 0.00078 24.8 1.1 14 492-505 34-47 (48)
145 PF01910 DUF77: Domain of unkn 26.2 1.5E+02 0.0032 24.6 5.0 38 315-355 2-39 (92)
146 cd02989 Phd_like_TxnDC9 Phosdu 25.0 68 0.0015 27.4 2.8 28 431-458 5-36 (113)
147 KOG1547 Septin CDC10 and relat 23.7 3.4E+02 0.0074 27.1 7.5 74 316-394 185-266 (336)
148 COG0011 Uncharacterized conser 23.7 1.4E+02 0.0031 25.3 4.4 39 314-355 5-43 (100)
149 COG5019 CDC3 Septin family pro 22.5 5.6E+02 0.012 27.0 9.3 110 316-428 163-291 (373)
150 PLN03194 putative disease resi 21.9 1.2E+02 0.0026 28.7 4.0 48 312-365 25-72 (187)
151 COG4635 HemG Flavodoxin [Energ 20.9 1.5E+02 0.0034 27.4 4.3 42 330-379 13-55 (175)
152 cd00003 PNPsynthase Pyridoxine 20.7 68 0.0015 31.4 2.2 64 310-377 81-150 (234)
153 TIGR00559 pdxJ pyridoxine 5'-p 20.7 70 0.0015 31.4 2.2 63 311-377 82-150 (237)
154 cd02948 TRX_NDPK TRX domain, T 20.3 85 0.0018 25.9 2.5 26 434-459 3-32 (102)
No 1
>KOG4163 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-130 Score=977.52 Aligned_cols=498 Identities=68% Similarity=1.189 Sum_probs=480.4
Q ss_pred cccCCCCccccccceeecceecccCChhhhHHHhhhccceeeeeeeceeEEeccchHHHHHHHHHHHHHHHHhcceeeee
Q 010413 12 NATGGGKKKEVKKETGLGLSYKKDENFGEWYSEVVVNGEMIEYYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCY 91 (511)
Q Consensus 12 ~~~~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~a~~~d~~~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~ 91 (511)
.+.+.+.+...+.++..|++.++++||++||.+++.+++|+||+.++|||++.|+++.||+.|+.+++..+++.|.+++|
T Consensus 42 ~~~~~~~~~~~~~~~~~gl~~~k~~df~~WY~qVitk~emieYydvsGcyilRP~s~aIWe~Iq~wfd~~ik~lGv~ncY 121 (551)
T KOG4163|consen 42 KAEPSKKSAAVKKATLLGLTAKKEEDFPEWYSQVITKGEMIEYYDVSGCYILRPWSYAIWEAIQDWFDAEIKKLGVKNCY 121 (551)
T ss_pred ccCccccccchhhhhhcccccccccchHHHHHHHhhhhhhheeecccceEEecchHHHHHHHHHHHHHHHHHHhccccce
Confidence 34444555677889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhhhhhcCCCCccccccccceEeeeecC
Q 010413 92 FPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSN 171 (511)
Q Consensus 92 tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~ 171 (511)
||+|++.++++++..|+++|++|+.|+|..|+++|++++++|||||+.++++|++|++||||||+|++||++|.|||.++
T Consensus 122 FPmfVs~~~LEkEk~Hve~FaPEvAwVTr~G~seLeepiaiRPTSETvmyp~yakWi~ShRDLPlkLNQW~nVvRWEfk~ 201 (551)
T KOG4163|consen 122 FPMFVSKSVLEKEKDHVEGFAPEVAWVTRAGNSELEEPIAIRPTSETVMYPYYAKWIQSHRDLPLKLNQWCNVVRWEFKH 201 (551)
T ss_pred eeeecCHHHHhhhhhhhccCCcceEEEEecCCcccccceeeccCccceecHHHHHHHHhhccCchhhhhhhhheeeeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhhhccccccccccccccccCccceeeEEEeecCCCcccc
Q 010413 172 PTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQ 251 (511)
Q Consensus 172 ~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~lg~ip~~~g~~~~~ek~~ga~y~~~ie~~~p~~gr~lq 251 (511)
+.+|+|.|||+|+|+|++|+++++|++|+.+|||+|.++|.+++++|++.|.+++.|+|+|+.|+.+||+++|..||++|
T Consensus 202 p~PFlRtrEFLWQEGHTAfat~~eA~eEvlqiLdlYa~vy~ellAiPVvkGrKse~EkFaGgd~TttvEa~i~~~GrgiQ 281 (551)
T KOG4163|consen 202 PQPFLRTREFLWQEGHTAFATPEEAEEEVLQILDLYARVYEELLAIPVVKGRKSEKEKFAGGDYTTTVEAFIPCSGRGIQ 281 (551)
T ss_pred CCcchhhhHHHHhcCcchhCCHhHHHHHHHHHHHHHHHHHHhhhccccccCccchhhhccCCcceEEEeeeecccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccceeeEEeCC-CCceeeeeeeccccccceeeEEEEEeeCCCCcccCCcccceeEEEEeeccCcc----
Q 010413 252 GATSHCLGQNFSKMFEIIFENE-KGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYKDA---- 326 (511)
Q Consensus 252 ~gt~~~lg~~~s~~f~i~y~~~-~g~~~~v~~~~~Gi~eRli~~Lie~~~d~~G~~lP~~laP~qV~Iipi~~~~~---- 326 (511)
.+|+|+||+|||++|++.|.|+ +|.+.++|++|||+++|.|++++|.|+||.|++|||.+||+||+|||++.++.
T Consensus 282 gaTSH~LGQNFSkmF~i~~ed~~~g~~~fv~QnSWg~sTRtiGvmiM~HgDdkGLvLPPrVA~vQvVvvP~git~~~s~~ 361 (551)
T KOG4163|consen 282 GATSHHLGQNFSKMFEIVFEDPGEGEKEFVWQNSWGLSTRTIGVMIMTHGDDKGLVLPPRVAPVQVVVVPVGITDATSEE 361 (551)
T ss_pred ccchhhhhHHHHHhhceeecCCCccchhheeecccccccceeeEEEEEecCCcccccCCcccceEEEEEeccccccCchH
Confidence 9999999999999999999999 77888999999999999999999999999999999999999999999986543
Q ss_pred chhHHHHHHHHHHHHHHHcCceeeecCCCCCCCCCCCCcccccCceeEeeeCcccccCCcEEEEEccCCCccccccchHH
Q 010413 327 DTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLV 406 (511)
Q Consensus 327 ~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~~lg~k~~~ae~~giP~~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~el~ 406 (511)
+++.+.++|..+.+.|..+|||++.|+|+++++||||++||++|||+||+|||+|+++++|++.+||+++|.+|++++|.
T Consensus 362 ~~~~l~~a~~~v~~~L~~~giR~~~D~rDnytpGwKfnhwElkGVPlRiEiGPrD~~~~qv~~VrRd~~~K~~v~~~~l~ 441 (551)
T KOG4163|consen 362 DKQELLDACSAVESRLLGAGIRAEADLRDNYTPGWKFNHWELKGVPLRIEIGPRDLASNQVVAVRRDTGEKKDVSLGDLE 441 (551)
T ss_pred HHHHHHHHHHHHHHHHhccCceEeecccccCCCCccccceeecCceeEEEeccchhhhCeEEEEEccCCcccccCHHHHH
Confidence 36778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcceeccChhHHHHHhcCCceEEecCCCchhhhHHHHhhcccc-------ccccccc
Q 010413 407 ERIKELLDEIQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTKGE-------MGAAKTL 479 (511)
Q Consensus 407 ~~i~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~wc~~~~ce~~ik~~~~~~-------~~~~~~~ 479 (511)
..|+++|++||.+||++|++.+++|++.+++|+||+++|++|+++++||||..+||++||++|++. +|||++|
T Consensus 442 ~~v~elLe~iq~~m~~kA~~~rds~~~~v~~~~eF~~aL~~k~iilaPwcg~~ecE~~IK~~s~r~e~ge~apsmGAKtl 521 (551)
T KOG4163|consen 442 KTVKELLEKIQTNLYEKAKEKRDSHIVKVNTWEEFVKALDQKKIILAPWCGEIECEKDIKKRTARDEDGEEAPSMGAKTL 521 (551)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhheeeeeeHHHHHHHhccCCEEEccccCcHHHHHHHHhhhccccCCCCcccCCceee
Confidence 999999999999999999999999999999999999999999999999999999999999999852 7999999
Q ss_pred cccCCCCCCCCCCcccccCCCcceEEeeeccC
Q 010413 480 CSPLEQPEIPEGTLCFASGKPAKRWSYWGRSY 511 (511)
Q Consensus 480 cip~~~~~~~~~~~C~~~g~~a~~~~~~~rsY 511 (511)
||||+||. .+.+|++||++|++|+||||||
T Consensus 522 CiPf~qpe--~~~kcl~cg~~ak~~~lfGRSY 551 (551)
T KOG4163|consen 522 CIPFEQPE--LGEKCLCCGKPAKKYTLFGRSY 551 (551)
T ss_pred eecCCCCC--CccceeccCCccceEEEecccC
Confidence 99999995 4568999999999999999999
No 2
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.1e-113 Score=917.79 Aligned_cols=467 Identities=49% Similarity=0.923 Sum_probs=446.7
Q ss_pred cccCChhhhHHHhhhccceeeeeeeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCC
Q 010413 33 KKDENFGEWYSEVVVNGEMIEYYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFA 112 (511)
Q Consensus 33 ~~~~~~~~~~~~~~~~a~~~d~~~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~ 112 (511)
++++||++||++|+++|+++|+..++|+++|+|.|+++|++|++++++.++++||++|+||+|++.++|.+++||+++|.
T Consensus 9 ~~~~~f~~w~~~~~~~~~l~d~~~v~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~ 88 (477)
T PRK08661 9 PRSEDFSEWYNDVVKKAELADYSPVKGCMVIKPYGYAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFA 88 (477)
T ss_pred ccccchHHHHHHHHHHccCcccCCCCceEEECccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcc
Confidence 67899999999999999999998899999999999999999999999999999999999999999999987899999999
Q ss_pred cceeeEeccCCCCCCCceeecCCCccccchhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccC
Q 010413 113 PEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFAT 192 (511)
Q Consensus 113 ~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~ 192 (511)
++||++++.++.+++++++||||+|+.|+.+|++|++||+|||+|+|||++|||||.+ ++||+|+|||+|+|+|++|++
T Consensus 89 ~e~~~v~~~~~~~~~e~l~LrPtsE~~i~~~~~~~i~SyrdLPlrl~q~~~vfR~E~~-~rgl~R~rEF~~~E~h~~~~~ 167 (477)
T PRK08661 89 PEVAWVTHGGGEKLEEKLALRPTSETIIYPMYKKWIQSYRDLPLLYNQWVNVVRWETK-TRPFLRTREFLWQEGHTAHAT 167 (477)
T ss_pred cccEEEEccCCCccCceEEEecCCcHHHHHHHHhhhcchhhcCHHHhcccceeeCCCC-CCCcceeeeEEEcceeeeeCC
Confidence 9999999988777789999999999999999999999999999999999999999988 789999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHH-hhhhccccccccccccccccCccceeeEEEeecCCCcccccccccccccccccceeeEEe
Q 010413 193 KSEADDEVLQILELYRRIY-EEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFE 271 (511)
Q Consensus 193 ~e~a~~e~~~~l~~~~~i~-~~lg~ip~~~g~~~~~ek~~ga~y~~~ie~~~p~~gr~lq~gt~~~lg~~~s~~f~i~y~ 271 (511)
+++|++|+..++++|.++| +.|| +|++++.++.+|+|+||.+++++|++||+ ||++|+||+|+||++||++|+++|.
T Consensus 168 ~eea~~e~~~~l~~y~~i~~~~Lg-lp~~~~~~~~~ekf~ga~~~~~ie~~~~d-gr~~q~gt~~~Lg~~~s~~f~i~y~ 245 (477)
T PRK08661 168 EEEAEEETLEMLEIYKEFFEDYLA-IPVIIGKKTEWEKFAGADYTYTIEAMMPD-GKALQAGTSHYLGQNFAKAFDIKFQ 245 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-CeEEEEecChHHhhCCCcceeEEEEEeCC-CCEEEEEEecccccchhHhcCCEEE
Confidence 9999999999999999999 7676 99999999989999999999999999987 9999999999999999999999999
Q ss_pred CCCCceeeeeeeccccccceeeEEEEEeeCCCCcccCCcccceeEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeee
Q 010413 272 NEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANM 351 (511)
Q Consensus 272 ~~~g~~~~v~~~~~Gi~eRli~~Lie~~~d~~G~~lP~~laP~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~ 351 (511)
|++|+.+++|++|||+++|+|++|+|+|+|+.|++||+++||+||+|||+..++++.+++.++|.+|++.|+++|++|++
T Consensus 246 d~~g~~~~v~~~s~G~~~R~i~alie~~~D~~Gl~lP~~iAP~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~GirV~l 325 (477)
T PRK08661 246 DKDGKLEYVHQTSWGVSTRLIGALIMTHGDDKGLVLPPKIAPIQVVIVPIFKKEEKKEEVLEYAKELAEELKKAGIRVKL 325 (477)
T ss_pred CCCCCEeeeEEecccHHHHHHHHHHHHhCccCCCccCcccCCCeEEEEEecCCCcCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999543222367889999999999999999999
Q ss_pred cCCCCCCCCCCCCcccccCceeEeeeCcccccCCcEEEEEccCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010413 352 DSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLDEIQESLFVAAKQRRDAC 431 (511)
Q Consensus 352 D~~~~~~lg~k~~~ae~~giP~~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~el~~~i~~~l~~~~~~l~~~a~~~~~~~ 431 (511)
|+|...++|+||++|+++|+|++|+||++|+++|+|+|++|++++|..|+++++++.++++|++||++||+||++++++|
T Consensus 326 D~r~~~s~gkK~~~ae~~GvP~~IiIG~~ele~~~V~ik~rdtgek~~v~~~el~~~l~~~l~~~~~~l~~~a~~~~~~~ 405 (477)
T PRK08661 326 DDRSDKTPGWKFNEWELKGVPLRIEIGPRDLENNTVVLVRRDTLEKETVPLDELVEKVPELLEEIQENLYEKAKEFLEEN 405 (477)
T ss_pred ECCCCCCHHHHHHHHHHCCCCEEEEECcchhhcCeEEEEECCCCceEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99444799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccChhHHHHHh-cCCceEEecCCCchhhhHHHHhhccccccccccccccCCCCCCCCCCcccccCCCcceEEeeecc
Q 010413 432 IQIVKTWDEFVEAL-GQRKMILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEIPEGTLCFASGKPAKRWSYWGRS 510 (511)
Q Consensus 432 ~~~~~~~~e~~~~~-~~~~~~~~~wc~~~~ce~~ik~~~~~~~~~~~~~cip~~~~~~~~~~~C~~~g~~a~~~~~~~rs 510 (511)
|+.++|||||+++| ++||+|++||||+.+||++||++| ||++|||||+++ +.+|++||+||++|++||||
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~p~~~~----~~~c~~~~~~~~~~~~~~~~ 476 (477)
T PRK08661 406 TVEVDTLEEFKEAIEEKGGFVKAPWCGDEECEEKIKEET-----GATIRCIPLEQE----KGKCIVCGKPAKKRVLFAKA 476 (477)
T ss_pred eEEcCCHHHHHHHHHhCCCEEEEEecCCHHHHHHHHHHh-----CCEEEeEEcCCC----CCcccccCCccceEEEEEEE
Confidence 99999999999999 778999999999999999999999 999999999886 23799999999999999999
Q ss_pred C
Q 010413 511 Y 511 (511)
Q Consensus 511 Y 511 (511)
|
T Consensus 477 y 477 (477)
T PRK08661 477 Y 477 (477)
T ss_pred C
Confidence 9
No 3
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=100.00 E-value=5.2e-113 Score=912.98 Aligned_cols=468 Identities=44% Similarity=0.847 Sum_probs=446.1
Q ss_pred cccCChhhhHHHhhhccceeeeeeeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCC
Q 010413 33 KKDENFGEWYSEVVVNGEMIEYYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFA 112 (511)
Q Consensus 33 ~~~~~~~~~~~~~~~~a~~~d~~~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~ 112 (511)
++++||++||++|+++|+++|+++++|+++|+|.|+.+|+.|++++++.++++||++|+||+|++.++|.++++|+++|.
T Consensus 3 ~~~~~f~~wy~~l~~~~~li~~~~~~G~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~ 82 (472)
T TIGR00408 3 SKMQDFSEWYHQILEKAEIIDYYPVKGCYVWLPYGFKIWKNIQKILRNILDEIGHEEVYFPMLIPESELAKEKDHIKGFE 82 (472)
T ss_pred cccccHHHHHHHHHHHcCCccccCCCceEEECcCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhhcchhhhcc
Confidence 68899999999999999999999999999999999999999999999999999999999999999999987788999999
Q ss_pred cceeeEeccCCCCCCCceeecCCCccccchhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccC
Q 010413 113 PEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFAT 192 (511)
Q Consensus 113 ~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~ 192 (511)
++||++++.|+++++++++||||+|++++.+|++|++||++||+|+|||++|||+|.++++||+|+|||+|+|+|++|++
T Consensus 83 ~e~f~v~~~g~~~~~e~l~LrPt~e~~i~~~~~~~i~S~rdLPlr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~~~ 162 (472)
T TIGR00408 83 PEVYWITHGGLSKLDEPLALRPTSETAMYPMFKKWVKSYTDLPLKINQWVNVFRYETKHTRPFLRTREFTWQEAHTAHAT 162 (472)
T ss_pred hhcEEEecCCCCccCCcEEEeCCCcHHHHHHHhccccChhhcCHHHhheeeeecCCCCCCCCcceeeeeehhhhhhhhCC
Confidence 99999999887778899999999999999999999999999999999999999999998899999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHh-hhhccccccccccccccccCccceeeEEEeecCCCcccccccccccccccccceeeEEe
Q 010413 193 KSEADDEVLQILELYRRIYE-EFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFE 271 (511)
Q Consensus 193 ~e~a~~e~~~~l~~~~~i~~-~lg~ip~~~g~~~~~ek~~ga~y~~~ie~~~p~~gr~lq~gt~~~lg~~~s~~f~i~y~ 271 (511)
++++.+|+..++++|.++|+ .|| +|+..+.++++|+|+|+.+++++|++||+ ||++|+||+|+||++||++|+++|.
T Consensus 163 ~e~a~~e~~~~l~~y~~i~~~~lg-lp~~~~~~~~~ek~~ga~~~~~~e~~~~d-gr~~q~~t~~~Lg~~~sk~f~i~y~ 240 (472)
T TIGR00408 163 AEEAEEQVLRALDIYKEFIENSLA-IPYFVGRKPEWEKFAGAEYTWAFETIMPD-GRTLQIATSHNLGQNFAKTFEIKFE 240 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC-CeEEEEecCchhhcCCccceEEEeEEEcC-CCEEEEeeeecccccccHhcCCEEE
Confidence 99999999999999999998 776 89999999989999999999999999987 8999999999999999999999999
Q ss_pred CCCCceeeeeeeccccccceeeEEEEEeeCCCCcccCCcccceeEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeee
Q 010413 272 NEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANM 351 (511)
Q Consensus 272 ~~~g~~~~v~~~~~Gi~eRli~~Lie~~~d~~G~~lP~~laP~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~ 351 (511)
+++|+..++|++|||+++|+|++|+|+|+|+.|++||+++||+||+|||+..++.+.+++.++|.+|++.||++|++|++
T Consensus 241 ~~~g~~~~~h~~s~Gi~eRli~~lie~~~d~~gl~~P~~iaP~qV~Iipi~~~~~~~~~~~~~A~~l~~~Lr~~girv~l 320 (472)
T TIGR00408 241 TPTGDKEYAYQTSYGISTRVIGALIAIHSDEKGLVLPPRVAPIQVVIIPIIFKKKENEKVMEAAREVRSRLKKAGFRVHI 320 (472)
T ss_pred CCCCCEEeeEEccccHHHHHHHHHHHHhCCCCceeeChhhCcceEEEEEccCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 99999999999999988999999999999999999999999999999998211111246889999999999999999999
Q ss_pred cCCCCCCCCCCCCcccccCceeEeeeCcccccCCcEEEEEccCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010413 352 DSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLDEIQESLFVAAKQRRDAC 431 (511)
Q Consensus 352 D~~~~~~lg~k~~~ae~~giP~~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~el~~~i~~~l~~~~~~l~~~a~~~~~~~ 431 (511)
|+++ .++|+||++|+++|+|++|+||++|+++|+|+|++|++++|..|+++++++.|.++|+++|++||+||++++++|
T Consensus 321 D~r~-~s~gkk~k~Ae~~GvP~~IiIG~~Ele~~~V~ik~rdt~eq~~v~l~el~~~l~~~l~~~~~~l~~~a~~~~~~~ 399 (472)
T TIGR00408 321 DDRD-NRPGRKFYQWEIKGIPLRIEVGPNDIEKNIAVISRRDTGEKYQVSLDQLEERVVELLNNIQENLRNRAWERFEQK 399 (472)
T ss_pred ECCC-CCHHHHHHHHHHCCCCEEEEECcchhhCCeEEEEECCCCceEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9998 499999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccChhHHHHHhcCC-ceEEecCCCchhhhHHHHhhccccccccccccccCCCCCCCCCCcccccCCCcceEEeeecc
Q 010413 432 IQIVKTWDEFVEALGQR-KMILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEIPEGTLCFASGKPAKRWSYWGRS 510 (511)
Q Consensus 432 ~~~~~~~~e~~~~~~~~-~~~~~~wc~~~~ce~~ik~~~~~~~~~~~~~cip~~~~~~~~~~~C~~~g~~a~~~~~~~rs 510 (511)
|+.++|||||+++|+++ |+|++||||+.+||++||++| +||+||||++++. +.+|++||+||++|++||||
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~---~~~c~~~~~~~~~~~~~~~~ 471 (472)
T TIGR00408 400 IVIVETLEEIKQALNEKRGVVLVPWCGEEECEEDLKEKV-----QVTILCIPEDGDV---LQLCIFCGRKAPDYVLIART 471 (472)
T ss_pred eEEcCCHHHHHHHHHhCCCEEEEEecCCHHHHHHHHHHh-----CCeEeEEECCCCC---CCccCccCCcccEEEEEEEe
Confidence 99999999999999864 599999999999999999999 9999999998872 35799999999999999999
Q ss_pred C
Q 010413 511 Y 511 (511)
Q Consensus 511 Y 511 (511)
|
T Consensus 472 y 472 (472)
T TIGR00408 472 Y 472 (472)
T ss_pred C
Confidence 9
No 4
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-85 Score=688.94 Aligned_cols=470 Identities=32% Similarity=0.525 Sum_probs=428.8
Q ss_pred eecccCChhhhHHHhhhccceeeeeeeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccC
Q 010413 31 SYKKDENFGEWYSEVVVNGEMIEYYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG 110 (511)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~a~~~d~~~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~ 110 (511)
.-+...|++.||++|+.+|++++. +++|+|.|+|.|+++|++|++++|+++++.|++||.+|+|.|.+|| ++||||++
T Consensus 11 ~~~~p~da~~~sh~ll~rAg~i~~-~~~G~y~~lP~g~rv~~kI~~iir~em~~~G~~Evl~P~L~p~eLw-kEs~r~~~ 88 (500)
T COG0442 11 LKEKPADASEWSHQLLLRAGMIRK-PVKGLYVWLPLGLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELW-KESGRWEG 88 (500)
T ss_pred ccCCcchhHHHHHHHHHhcCceec-ccCceEEECccHHHHHHHHHHHHHHHHHhcCceEEechhcCHHHHH-HHhChhhh
Confidence 335578999999999999999999 9999999999999999999999999999999999999999998888 79999999
Q ss_pred CCcceeeEeccCCCCCCCceeecCCCccccchhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccc
Q 010413 111 FAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAF 190 (511)
Q Consensus 111 f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~ 190 (511)
|.+||||++|+| +++++||||+|..++.++++|++||+|||+++|||+++||||.||++||+|.|||+|+|+|+||
T Consensus 89 f~~El~~v~drg----~~~l~L~PTsEe~it~~~~~~i~SYkdLPl~lYQi~~kfRdE~rpr~gllR~REF~mkdaySfh 164 (500)
T COG0442 89 FGPELFRVKDRG----DRPLALRPTSEEVITDMFRKWIRSYKDLPLKLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFH 164 (500)
T ss_pred cchhhEEEEccC----CceeeeCCCcHHHHHHHHHHHhhhhhhCCcceeeeeeEEeccccCCCCccchheeeeccccccc
Confidence 999999999998 5999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhhHHHHHHHHHHHHHHHhhhhccccccccccccccccCccceeeEEEeecCCCcccccccccccccccccce-eeE
Q 010413 191 ATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMF-EII 269 (511)
Q Consensus 191 ~~~e~a~~e~~~~l~~~~~i~~~lg~ip~~~g~~~~~ek~~ga~y~~~ie~~~p~~gr~lq~gt~~~lg~~~s~~f-~i~ 269 (511)
.+.++|++++..++++|.+||. .+|+..+.++.+++|+|+.++..+++++|+ ++.+|++|+|++|+|++++| ++.
T Consensus 165 ~~~e~a~~~y~~~~~~Y~~if~---~i~l~~~~~~ad~g~~Gg~~S~eF~~l~pd-~ge~qi~ts~~y~aN~e~a~~~~~ 240 (500)
T COG0442 165 ADEEDAEETYEKMLDAYSRIFL---RLPLIFGPVPADEGFIGGSYSHEFEALMPD-GGEDQIATSHHYGANFEKAFIDIK 240 (500)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH---hCCceEEeecccCCCCCCccceEEEEEccC-CCccEEEEecchHHhHHHhccCCC
Confidence 9999999999999999999994 378899999999999999999999999986 89999999999999999999 999
Q ss_pred EeCCC-CceeeeeeeccccccceeeEEEEEeeCCCCcccCCcccceeEEEEeeccCcc-chhHHHHHHHHHHHHHHHcCc
Q 010413 270 FENEK-GEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYKDA-DTQGIFDACTATVETLCEAGI 347 (511)
Q Consensus 270 y~~~~-g~~~~v~~~~~Gi~eRli~~Lie~~~d~~G~~lP~~laP~qV~Iipi~~~~~-~~~~~~~~a~~i~~~Lr~~Gi 347 (511)
|.+++ ++..++|++|||+++|.+++++..|+||.|+++||.+||.||+++|+..+.. +......++..+...|...++
T Consensus 241 ~~~~~~~~~~~v~t~s~~~s~r~~~~~i~i~GDn~G~v~Pp~vA~~qV~~~~~~~~ga~~h~~~~~~~rd~~~~l~~~~~ 320 (500)
T COG0442 241 FEDEEEGELEYVHTTSYGISTRIIGAAILIHGDNEGLVLPPIVADIQVVIVPIFIKGANEHYKVVNYGRDVAEPLEKLGI 320 (500)
T ss_pred ccccccccceEecccceEEEeeeeeEEEEEecCCCCccCCchhccceEEEEeccccCcchhhhhhhhhhhhhhhhhhcce
Confidence 99887 7777999999999999999999999999999999999999999999975432 112367899999999999999
Q ss_pred eeeecCCCCCCCCCCCCcccccCceeEeeeCcccccCCcEEEEEccCCC--ccccccchHHHH-HHHHHHHHH--HHHHH
Q 010413 348 CANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGA--KVDLPRSSLVER-IKELLDEIQ--ESLFV 422 (511)
Q Consensus 348 rv~~D~~~~~~lg~k~~~ae~~giP~~iivG~~E~e~~~Vtvr~r~~~e--k~~v~~~el~~~-i~~~l~~~~--~~l~~ 422 (511)
+++.|+++..++|+||+.|+.+|||.++.+|+|+.++.+++|.+|++.+ +..++....++. +..+++.+| +.|+.
T Consensus 321 ~~~~D~~~~~~~G~kl~~~e~ieVghif~lG~kyse~~~a~v~~r~g~~~~~~mg~ygigvsr~v~a~ieq~~d~~gi~w 400 (500)
T COG0442 321 RVEGDDRSPDGPGFKLNIWEGIEVGHIFELGTKYSEAMNATVLDRDGKEQPKTMGCYGIGVSRLVAALLEQIHDENGIIW 400 (500)
T ss_pred EEeccccCCCCCCceeeeeeccccCEEEEECchhhhhCeeEEEecCCCccceEEEehhhhhhhHHHHHHHHhcccccCcc
Confidence 9999976546999999999999999999999999999999999999998 788999999998 999999999 99999
Q ss_pred H-HHHHHHhcceeccChhHHHHHhc-CCceEEecCCCchhhhHHHHhhccc-cccccccccccCCCCC---CCCCC---c
Q 010413 423 A-AKQRRDACIQIVKTWDEFVEALG-QRKMILAPWCDEEEVEKDVKARTKG-EMGAAKTLCSPLEQPE---IPEGT---L 493 (511)
Q Consensus 423 ~-a~~~~~~~~~~~~~~~e~~~~~~-~~~~~~~~wc~~~~ce~~ik~~~~~-~~~~~~~~cip~~~~~---~~~~~---~ 493 (511)
+ |.+.++.+|+.+++. |++..+. +++++.+||||+.+|+.+++++-.+ ...+|+++|||++... ..++. +
T Consensus 401 ~~a~apf~~~iv~~n~~-~~~~~~~~~~~~~~l~~~G~~e~~~ddr~er~g~k~~~a~liGiP~~~~~g~~~~~g~~e~k 479 (500)
T COG0442 401 PKAIAPFDVHIVPVNTK-DFKQAEAAEKLYVELPWCGTVEVLLDDRDERPGVKFADADLIGIPLRIVVGKRLAEGEVEVK 479 (500)
T ss_pred ccccCcceeEEEEcCch-hHHHHHHhhhHHHHHHhCCchhhhhhhhccccCccccCCeEecccceeeecccccCCceeEE
Confidence 9 999999999999988 5655554 4569999999999999999933221 1239999999997642 22333 8
Q ss_pred ccccCCCcce--EEeeeccC
Q 010413 494 CFASGKPAKR--WSYWGRSY 511 (511)
Q Consensus 494 C~~~g~~a~~--~~~~~rsY 511 (511)
|..||.++.. +++|+|+|
T Consensus 480 ~r~~ge~~~~~~~~l~~~~~ 499 (500)
T COG0442 480 CRKCGEKEAVTIEALFARLY 499 (500)
T ss_pred ecCCCchhhccHHHHHHHhh
Confidence 9999977777 89999987
No 5
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.4e-74 Score=618.92 Aligned_cols=382 Identities=17% Similarity=0.274 Sum_probs=340.1
Q ss_pred cCCCCccccccceeecceecccCChhhhHHHhhhccc------------eeeee--eeceeEEeccchHHHHHHHHHHHH
Q 010413 14 TGGGKKKEVKKETGLGLSYKKDENFGEWYSEVVVNGE------------MIEYY--DISGCYIIRPWAMSIWETMQKFFD 79 (511)
Q Consensus 14 ~~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~a~------------~~d~~--~~~G~~~~~P~g~~i~~~I~~~~~ 79 (511)
+++||++|+||||+||++|++++++++|++. +++|+ +.++. .++|+++|+|.|+.+|+.|+++++
T Consensus 101 ~~~g~~~~~~l~Riyg~~f~~~~~l~~~~~~-~eea~~rdHr~lg~~l~lf~~~~~~~~G~~~~lP~G~~i~~~L~~~~r 179 (545)
T PRK14799 101 STHHPNPNEQYVRIRGVAFETEEQLKDYLTW-LEKAEETDHRLIGEKLDLFSFHEEAGSGLVLFHPKGQTIRNELIAFMR 179 (545)
T ss_pred ccCCCccCceeEEEEEeecCCHHHHHHHHHH-HHhcccCCHHHHHHHcCCcccccccCCcceEEcChHHHHHHHHHHHHH
Confidence 4459999999999999999999999999998 56664 33332 489999999999999999999999
Q ss_pred HHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhhhhhcCCCCccccc
Q 010413 80 AEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLN 159 (511)
Q Consensus 80 ~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~ 159 (511)
+.+.++||++|.||+|.+.++|. .|||+++|.++||+++ .+ +++++||||+||+|+.+|+++.+|||+||+|++
T Consensus 180 ~~~~~~Gy~eV~TP~i~~~eL~k-~SGh~~~y~~~mf~~~-~~----~e~~~LrPm~cp~~~~~~~~~~~SyrdLPlR~~ 253 (545)
T PRK14799 180 EINDSMGYQEVYTSHVFKTDIWK-ISGHYTLYRDKLIVFN-ME----GDEYGVKPMNCPAHILIYKSKPRTYRDLPIRFS 253 (545)
T ss_pred HHHHHcCCeEEECCccchHHHHh-hccccccchhhcceee-cc----CceEEeccCCCHHHHHHHhccccChhhCCHhhE
Confidence 99999999999999999999995 6999999999999994 44 489999999999999999999999999999999
Q ss_pred cccceEeeeecCC-CCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhhhc----cccccc--------cccc
Q 010413 160 QWCNVVRWEFSNP-TPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLA----VPVIKG--------KKSE 226 (511)
Q Consensus 160 q~g~vfR~E~~~~-~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~lg~----ip~~~g--------~~~~ 226 (511)
+||+|||||.++. .||+|+|||+|+|+|+ ||+++++.+|+..+++++.++|+.||+ +++.+. ....
T Consensus 254 e~g~vfR~E~sg~l~GL~RvReF~Q~DaHi-f~~~~q~~~E~~~~l~~i~~vy~~fG~~~~~~~i~ls~Rpe~~~G~~~~ 332 (545)
T PRK14799 254 EFGHVYRWEKKGELYGLLRVRGFVQDDGHI-FLREDQLREEIKMLISKTVEVWHKFGFKDDDIKPYLSTRPDESIGSDEL 332 (545)
T ss_pred EecceecCCCCCCccccccceeEEEcccEE-EeCHHHHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEcChhhhcCCHHH
Confidence 9999999998764 4999999999999998 999999999999999999999999984 122221 1111
Q ss_pred ccc--------------------ccCccceeeEEEee-cCCCcccccccccccccccccceeeEEeCCCCcee---eeee
Q 010413 227 LEK--------------------FAGGLYTTTVEAFI-PNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKA---MAWQ 282 (511)
Q Consensus 227 ~ek--------------------~~ga~y~~~ie~~~-p~~gr~lq~gt~~~lg~~~s~~f~i~y~~~~g~~~---~v~~ 282 (511)
|++ ..||+|+|++|..+ +++||.+|++|++ +|++++++|+++|.+.+|+.. ++|+
T Consensus 333 wdka~~~l~~~L~~~gl~~~~~~g~gafygpkiD~~v~dalgr~~q~~Tiq-ldf~lp~rf~Ley~~~~~~~~~pv~ihr 411 (545)
T PRK14799 333 WEKATNALISALQESGLKFGIKEKEGAFYGPKIDFEIRDSLGRWWQLSTIQ-VDFNLPERFKLEYIDKDGIKKRPVMVHR 411 (545)
T ss_pred HHHHHHHHHHHHHHcCCCeEEecceeccccCccceEehhhcCchhhhhhhh-hhcCcccccceEEEcCCCCCcccEEEEc
Confidence 222 24789999998766 7889999999999 999999999999999888543 7899
Q ss_pred eccccccceeeEEEEEeeCCCCcccCCcccceeEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeeecCCCCCCCCCC
Q 010413 283 NSWAYTTRTIGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWK 362 (511)
Q Consensus 283 ~~~Gi~eRli~~Lie~~~d~~G~~lP~~laP~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~~lg~k 362 (511)
+++|.+||++++|++++. +.||+|++|.||+|+|++ ++..++|.+|++.||++|++|++|+++ .++|+|
T Consensus 412 ~~~GgiERli~iL~e~~~----G~~P~wlaP~qV~Iipi~------e~~~~~A~~Ia~~LR~~GirVelD~~~-~~lgkk 480 (545)
T PRK14799 412 AIYGSIDRFVAILLEHFK----GKLPTWLSSVQVRVLPIT------DEVNEYAEKVLNDMRKRRIRAEIDYAG-ETLSKR 480 (545)
T ss_pred cCCCCHHHHHHHHHHHcC----CCCCCCCCCceEEEEEcC------HHHHHHHHHHHHHHHhCCCEEEEECCC-CCHHHH
Confidence 988889999999988753 369999999999999997 457899999999999999999999988 599999
Q ss_pred CCcccccCceeEeeeCcccccCCcEEEEEccCCCccccccchHHHHHHHHHHH
Q 010413 363 YSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLDE 415 (511)
Q Consensus 363 ~~~ae~~giP~~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~el~~~i~~~l~~ 415 (511)
+++|++.|+|++|+||++|+++++|+||+|+++++..|+++++++.+.+.+++
T Consensus 481 ir~A~k~gip~viIIG~~E~e~~~VtVR~r~~~eq~~v~l~eli~~l~~~i~~ 533 (545)
T PRK14799 481 IKNAYDQGVPYILIVGKKEASEGTVTVRARGNIEVRNVKFEKFLELLITEIAQ 533 (545)
T ss_pred HHHHHHcCCCEEEEEChhHhhcCeEEEEECCCCceEEEcHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999998877776665
No 6
>PLN02837 threonine-tRNA ligase
Probab=100.00 E-value=6.6e-73 Score=621.87 Aligned_cols=382 Identities=19% Similarity=0.287 Sum_probs=343.2
Q ss_pred ccCCCCccccccceeecceecccCChhhhHHHhhhccc------------eeeee--eeceeEEeccchHHHHHHHHHHH
Q 010413 13 ATGGGKKKEVKKETGLGLSYKKDENFGEWYSEVVVNGE------------MIEYY--DISGCYIIRPWAMSIWETMQKFF 78 (511)
Q Consensus 13 ~~~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~a~------------~~d~~--~~~G~~~~~P~g~~i~~~I~~~~ 78 (511)
|-..||++|+|+||+||++|++++++++|++. +++|+ +.|+. .++|+++|+|.|+++++.|++++
T Consensus 179 ~ywrg~~~~~~l~ri~g~~~~~~~~l~~~~~~-~~e~~~rdH~~lg~~l~lf~~~~~~g~G~~~~~p~G~~l~~~L~~~~ 257 (614)
T PLN02837 179 AYWRGDEKNQMLQRIYGTAWESEEQLKAYLHF-KEEAKRRDHRRLGQDLDLFSIQDDAGGGLVFWHPKGAIVRHIIEDSW 257 (614)
T ss_pred hhhcccccCcceEEEEEEecCCHHHHHHHHHH-HHHhhhCCHHHHHHHcCCcccCcCcCCcceEEechHHHHHHHHHHHH
Confidence 33679999999999999999999999999998 56663 33332 37899999999999999999999
Q ss_pred HHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhhhhhcCCCCcccc
Q 010413 79 DAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKL 158 (511)
Q Consensus 79 ~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl 158 (511)
++.+.+.||++|.||+|.+.++| +.||||+.|.++||.+.+.+ ++.++||||+|+.|+.+|+++++|||+||+|+
T Consensus 258 ~~~~~~~G~~~v~tP~l~~~~l~-~~sGh~~~~~~~mf~~~~~~----~~~y~l~p~~~p~~~~~~~~~~~SyrdLPlr~ 332 (614)
T PLN02837 258 KKMHFEHGYDLLYTPHVAKADLW-KTSGHLDFYKENMYDQMDIE----DELYQLRPMNCPYHILVYKRKLHSYRDLPIRV 332 (614)
T ss_pred HHHHHHCCCEEEECCccCCHHHH-hhcCCcccchhhcccccCCC----CceEEECCCCcHHHHHHHhCccCChhHCCHhh
Confidence 99999999999999999999999 57999999999999997654 47889999999999999999999999999999
Q ss_pred ccccceEeeeecC-CCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhhhcccc-ccccccc----------
Q 010413 159 NQWCNVVRWEFSN-PTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPV-IKGKKSE---------- 226 (511)
Q Consensus 159 ~q~g~vfR~E~~~-~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~lg~ip~-~~g~~~~---------- 226 (511)
+|||+|||+|+++ .+||+|+|||+|+|+|+ ||+++|+++|+..++++|.++|+.|| +|+ .+..+++
T Consensus 333 ~~~~~~~R~E~~g~~~GL~RvreF~~~e~h~-f~~~~q~~~e~~~~l~~~~~~~~~lg-~~~~~~~~~t~~~~~~g~~~~ 410 (614)
T PLN02837 333 AELGTVYRYELSGSLHGLFRVRGFTQDDAHI-FCLEDQIKDEIRGVLDLTEEILKQFG-FSKYEINLSTRPEKSVGSDDI 410 (614)
T ss_pred EeecccccCCCCCCCcCcccccceEECeEEE-EeCHHHHHHHHHHHHHHHHHHHHHcC-CCeEEEEecCCchhccCCHHH
Confidence 9999999999975 56999999999999998 99999999999999999999999998 674 3322222
Q ss_pred cc--------------------cccCccceeeEEEee-cCCCcccccccccccccccccceeeEEeCCCCcee---eeee
Q 010413 227 LE--------------------KFAGGLYTTTVEAFI-PNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKA---MAWQ 282 (511)
Q Consensus 227 ~e--------------------k~~ga~y~~~ie~~~-p~~gr~lq~gt~~~lg~~~s~~f~i~y~~~~g~~~---~v~~ 282 (511)
|+ .+.||+|+|+||..+ +.+||.||+||+| +|++++++|+++|.+++|+.+ ++|+
T Consensus 411 w~~~~~~l~~~l~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~q~~tiq-ldf~~~~~f~l~y~~~d~~~~~pv~ih~ 489 (614)
T PLN02837 411 WEKATTALRDALDDKGWEYKVDEGGGAFYGPKIDLKIEDALGRKWQCSTIQ-VDFNLPERFDITYVDSNSEKKRPIMIHR 489 (614)
T ss_pred HHHHHHHHHHHHHHcCCCceeCCCcccccCcceeeEeeccCCceeeeccee-EeecchhhcCcEEECCCCCccCCEEEEc
Confidence 21 234789999999988 5579999999999 999999999999999999765 7899
Q ss_pred eccccccceeeEEEEEeeCCCCcccCCcccceeEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeeecCCCCCCCCCC
Q 010413 283 NSWAYTTRTIGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWK 362 (511)
Q Consensus 283 ~~~Gi~eRli~~Lie~~~d~~G~~lP~~laP~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~~lg~k 362 (511)
++||++||+|++|+|+|+ ..||+|+||.||+|||++ ++..++|.+|++.||++|++|++| .+ .++|+|
T Consensus 490 ~~~G~~eRlia~Lie~~~----g~~P~~laP~qV~IIpi~------~~~~~~A~~Ia~~Lr~~GirVev~-~~-~slgkk 557 (614)
T PLN02837 490 AILGSLERFFGVLIEHYA----GDFPLWLAPVQARVLPVT------DNELEYCKEVVAKLKAKGIRAEVC-HG-ERLPKL 557 (614)
T ss_pred CCccCHHHHHHHHHHHcC----CCCCCCCCCccEEEEEeC------hHHHHHHHHHHHHHHHCCCEEEEe-CC-CCHHHH
Confidence 999999999999999986 359999999999999997 356799999999999999999995 56 599999
Q ss_pred CCcccccCceeEeeeCcccccCCcEEEEEccCCCccccccchHHHHHHHHHHH
Q 010413 363 YSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLDE 415 (511)
Q Consensus 363 ~~~ae~~giP~~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~el~~~i~~~l~~ 415 (511)
+++|++.|+|++|+||++|+++++|+|++|+++++..++++++++.|.+.+++
T Consensus 558 ir~A~~~gip~~IiIG~~E~e~~~VtVr~r~~geq~~v~~~el~~~l~~~~~~ 610 (614)
T PLN02837 558 IRNAETQKIPLMAVVGPKEVETRTLTVRSRHGGELGTMPVDDFINRIQLAVEN 610 (614)
T ss_pred HHHHHHcCCCEEEEEcchhhhcCEEEEEECCCCceeEeeHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999988877766554
No 7
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=8.3e-71 Score=584.63 Aligned_cols=361 Identities=20% Similarity=0.360 Sum_probs=319.4
Q ss_pred ccCChhhhHHHhhhccceeeeeeeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCc
Q 010413 34 KDENFGEWYSEVVVNGEMIEYYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAP 113 (511)
Q Consensus 34 ~~~~~~~~~~~~~~~a~~~d~~~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~ 113 (511)
.+.+...+ +++.+|++++. .++|+++|+|.|+++|++|++++++++.++||++|.||+|.+.++| +.+|||+.|.+
T Consensus 16 ~~~~~~~~--~ll~r~g~~~~-~~~G~~~~lP~g~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~-~~sg~~~~~~~ 91 (439)
T PRK12325 16 KEAEIVSH--RLMLRAGMIRQ-QAAGIYSWLPLGLKVLKKIENIVREEQNRAGAIEILMPTIQPADLW-RESGRYDAYGK 91 (439)
T ss_pred cccchHHH--HHHHHcCCccc-cCCceEEECCcHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHH-hhcCCccccch
Confidence 33444444 77889999976 5999999999999999999999999999999999999999999999 57899999999
Q ss_pred ceeeEeccCCCCCCCceeecCCCccccchhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccCh
Q 010413 114 EVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATK 193 (511)
Q Consensus 114 emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~ 193 (511)
+||++++.+ +++++||||+|+.++.++++++.||++||+|+|||++|||+|.+|+.||+|+|||+|+|+|+|+++.
T Consensus 92 emf~~~d~~----~~~~~L~Pt~e~~~~~~~~~~~~syrdLPlrl~q~~~~fR~E~~~~~GL~R~reF~~~D~h~f~~~~ 167 (439)
T PRK12325 92 EMLRIKDRH----DREMLYGPTNEEMITDIFRSYVKSYKDLPLNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDLDE 167 (439)
T ss_pred hheEEecCC----CCEEEEcCCCcHHHHHHHHHHhhhchhhchHheEecCEecCCCCCCCCccccceEeEeccEEEeCCH
Confidence 999999876 4899999999999999999999999999999999999999999988899999999999999988999
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhcccccccc--------cc-----------cccccc-----------------------
Q 010413 194 SEADDEVLQILELYRRIYEEFLAVPVIKGK--------KS-----------ELEKFA----------------------- 231 (511)
Q Consensus 194 e~a~~e~~~~l~~~~~i~~~lg~ip~~~g~--------~~-----------~~ek~~----------------------- 231 (511)
+++++++..++++|.++|+.|| +|+.... .. +.+++.
T Consensus 168 ~~a~~~~~~~~~~~~~i~~~lg-l~~~~v~~~~~~~gg~~s~ef~~~~~~Ge~~~~~c~~~~~~~~~~~~~~~~~~~l~~ 246 (439)
T PRK12325 168 EGARHSYNRMFVAYLRTFARLG-LKAIPMRADTGPIGGDLSHEFIILAETGESTVFYDKDFLDLLVPGEDIDFDVADLQP 246 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC-CceEEEEEccCCCCCCcceeeEeecCCCCceEEEcCCchhhccCCCcccCCHHHHHH
Confidence 9999999999999999999998 6643211 00 011110
Q ss_pred ------------------Cccc-eeeEEEeecCCCcccccccccccccccccceeeEEeCCCCceeeeeeecccc-ccce
Q 010413 232 ------------------GGLY-TTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAY-TTRT 291 (511)
Q Consensus 232 ------------------ga~y-~~~ie~~~p~~gr~lq~gt~~~lg~~~s~~f~i~y~~~~g~~~~v~~~~~Gi-~eRl 291 (511)
+++| +++++.. ..+++++|++|+||++||++|+++|.|++|+++++|+++||+ ++|+
T Consensus 247 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ievg~~~~lg~~ys~~f~~~y~d~~g~~~~i~~~~~GiGieRl 323 (439)
T PRK12325 247 IVDEWTSLYAATEEMHDEAAFAAVPEERRL---SARGIEVGHIFYFGTKYSEPMNAKVQGPDGKEVPVHMGSYGIGVSRL 323 (439)
T ss_pred HHhhhcccccchhhhhccCCCCcCCCccee---ecceEEEEeeecCcccccHhcCCEEECCCCCEEeEEEeeeECCHHHH
Confidence 1112 2222211 257889999999999999999999999999999999999999 8999
Q ss_pred eeEEEEEeeCCCCcccCCcccceeEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeeecCCCCCCCCCCCCcccccCc
Q 010413 292 IGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGV 371 (511)
Q Consensus 292 i~~Lie~~~d~~G~~lP~~laP~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~~lg~k~~~ae~~gi 371 (511)
+++|+|+|+|+.|++||+|+||+||+|+|+..++ ++..++|.+|++.|+++|++|++|+++ .++|+||++|+++|+
T Consensus 324 i~~l~e~~~d~~g~~~P~~iaP~qV~Iipi~~~~---~~~~~~a~~i~~~L~~~Gi~v~~D~~~-~~lg~ki~~a~~~gi 399 (439)
T PRK12325 324 VAAIIEASHDDKGIIWPESVAPFKVGIINLKQGD---EACDAACEKLYAALSAAGIDVLYDDTD-ERPGAKFATMDLIGL 399 (439)
T ss_pred HHHHHHHhCccCCCcCCCCcCCeEEEEEecCCCC---HHHHHHHHHHHHHHHHCCCEEEEECCC-CCHhHHHHHHHHcCC
Confidence 9999999999999999999999999999995332 567899999999999999999999998 599999999999999
Q ss_pred eeEeeeCcccccCCcEEEEEccCCCccccccchHHHHHH
Q 010413 372 PLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIK 410 (511)
Q Consensus 372 P~~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~el~~~i~ 410 (511)
|++|+||++|+++++|+|++|+++++..|+++++++.|.
T Consensus 400 P~~iiVG~~e~~~~~V~vr~r~~~~~~~v~~~el~~~i~ 438 (439)
T PRK12325 400 PWQIIVGPKGLAEGKVELKDRKTGEREELSVEAAINRLT 438 (439)
T ss_pred CEEEEECCcccccCeEEEEEcCCCceEEEEHHHHHHHHh
Confidence 999999999999999999999999999999999887653
No 8
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1e-68 Score=594.37 Aligned_cols=379 Identities=20% Similarity=0.334 Sum_probs=339.7
Q ss_pred CCCccccccceeecceecccCChhhhHHHhhhccc------------eeee-eeeceeEEeccchHHHHHHHHHHHHHHH
Q 010413 16 GGKKKEVKKETGLGLSYKKDENFGEWYSEVVVNGE------------MIEY-YDISGCYIIRPWAMSIWETMQKFFDAEI 82 (511)
Q Consensus 16 ~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~a~------------~~d~-~~~~G~~~~~P~g~~i~~~I~~~~~~~~ 82 (511)
.||++|+|+||+||++|+..+.+.+|.+. +++|+ +.++ ..++|+++|+|.|+.+|+.|++++++.+
T Consensus 210 ~g~~~~~~l~Ri~g~a~~~~~~l~~~~~~-~~~~~~~dH~~l~~~~~l~~~~~~~~G~~~~~p~g~~~~~~i~~~~~~~~ 288 (639)
T PRK12444 210 RGDSNNQVLQRIYGVAFSSQKELEEYLHF-VEEAAKRNHRKLGKELELFMFSEEAPGMPFYLPKGQIIRNELEAFLREIQ 288 (639)
T ss_pred cCCCCCcceEEEEEEecCCHHHHHHHHHH-HHHhccCCHHHHHHHcCCcccccccCcceEEeeCHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999998 45553 2233 2589999999999999999999999999
Q ss_pred HhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhhhhhcCCCCcccccccc
Q 010413 83 KKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWC 162 (511)
Q Consensus 83 ~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g 162 (511)
.++||++|.||+|++.++|.+ +||+++|.++|| +.+.+ +++++||||+|++++++|++++.||++||+|++|||
T Consensus 289 ~~~G~~~v~tP~l~~~~l~~~-sG~~~~~~~emy-~~d~~----~~~~~LrP~~~~~~~~~~~~~~~sy~~LP~r~~~~g 362 (639)
T PRK12444 289 KEYNYQEVRTPFMMNQELWER-SGHWDHYKDNMY-FSEVD----NKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFG 362 (639)
T ss_pred HHcCCEEEECCccCCHHHHhh-cCChhhhhhhcC-eecCC----CcEEEEccCCCHHHHHHHhCcccChhhCCceeEEec
Confidence 999999999999999999965 799999999999 66665 489999999999999999999999999999999999
Q ss_pred ceEeeeecC-CCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhhhcccccccccccccc------------
Q 010413 163 NVVRWEFSN-PTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELEK------------ 229 (511)
Q Consensus 163 ~vfR~E~~~-~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~lg~ip~~~g~~~~~ek------------ 229 (511)
+|||||.++ ++||+|+|||+|+|+|+ ||+++++++|+..+++++.++|+.|| +|+.+..++++++
T Consensus 363 ~~fR~E~~~~~~Gl~R~reF~q~d~~~-f~~~~~~~~e~~~~~~~~~~i~~~lg-l~~~~~~~~r~~~~~G~~e~~~~~~ 440 (639)
T PRK12444 363 QVHRHEFSGALNGLLRVRTFCQDDAHL-FVTPDQIEDEIKSVMAQIDYVYKTFG-FEYEVELSTRPEDSMGDDELWEQAE 440 (639)
T ss_pred cccCCCCCcCCcCcceeeeeEEccEEE-ECCHHHHHHHHHHHHHHHHHHHHHcC-CcEEEEEECCccccCCCHHHHHHHH
Confidence 999999766 55999999999999997 79999999999999999999999998 6887644333221
Q ss_pred ------------------ccCccceeeEEEee-cCCCcccccccccccccccccceeeEEeCCCCcee---eeeeecccc
Q 010413 230 ------------------FAGGLYTTTVEAFI-PNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKA---MAWQNSWAY 287 (511)
Q Consensus 230 ------------------~~ga~y~~~ie~~~-p~~gr~lq~gt~~~lg~~~s~~f~i~y~~~~g~~~---~v~~~~~Gi 287 (511)
..||+|++++|..+ +..+|.+++||.+ +|++++++|+++|.+.+|.+. .+|++++|.
T Consensus 441 ~~l~~~l~~~~~~y~~~~~~ga~Y~~~~e~~~~~~~~~~~~~~t~~-~d~~~~~~f~l~~~~~~g~~~~P~i~~~~~~g~ 519 (639)
T PRK12444 441 ASLENVLQSLNYKYRLNEGDGAFYGPKIDFHIKDALNRSHQCGTIQ-LDFQMPEKFDLNYIDEKNEKRRPVVIHRAVLGS 519 (639)
T ss_pred HHHHHHHHHcCCCceeccCCcccccceEEEEeecCCCChhccccee-eecccccccceEEECCCCCccccEEEEECCCCC
Confidence 23789999999987 4568999999999 999999999999999988655 578899988
Q ss_pred ccceeeEEEEEeeCCCCcccCCcccceeEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeeecCCCCCCCCCCCCccc
Q 010413 288 TTRTIGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWE 367 (511)
Q Consensus 288 ~eRli~~Lie~~~d~~G~~lP~~laP~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~~lg~k~~~ae 367 (511)
+||+|++|++++ |+.||+|++|.||+|+|++. ++..++|.+|++.||++|++|++|.++ .++|+|+++|+
T Consensus 520 ieRli~~L~e~~----~~~~p~~~ap~qV~Ii~~~~-----~~~~~~a~~la~~LR~~Gi~veid~~~-~sl~kq~k~A~ 589 (639)
T PRK12444 520 LDRFLAILIEHF----GGAFPAWLAPVQVKVIPVSN-----AVHVQYADEVADKLAQAGIRVERDERD-EKLGYKIREAQ 589 (639)
T ss_pred HHHHHHHHHHhc----CCCCCCccCCceEEEEEccc-----HHHHHHHHHHHHHHHHCCCEEEEECCC-CCHHHHHHHHH
Confidence 999999999976 57899999999999999982 146799999999999999999999988 69999999999
Q ss_pred ccCceeEeeeCcccccCCcEEEEEccCCCccccccchHHHHHHHHHH
Q 010413 368 MKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLD 414 (511)
Q Consensus 368 ~~giP~~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~el~~~i~~~l~ 414 (511)
+.|+|++|+||++|+++|+|+||+|++++|..++++++++.+.+.++
T Consensus 590 k~g~~~~iiiG~~E~~~~~v~vr~~~t~~q~~i~l~el~~~l~~~~~ 636 (639)
T PRK12444 590 MQKIPYVLVIGDKEMENGAVNVRKYGEEKSEVIELDMFVESIKEEIK 636 (639)
T ss_pred HcCCCEEEEEcchhhhcCeEEEEECCCCceeeeeHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999887766554
No 9
>PLN02908 threonyl-tRNA synthetase
Probab=100.00 E-value=9.1e-68 Score=588.30 Aligned_cols=379 Identities=18% Similarity=0.257 Sum_probs=342.1
Q ss_pred CCCccccccceeecceecccCChhhhHHHhhhccc------------eeee-eeeceeEEeccchHHHHHHHHHHHHHHH
Q 010413 16 GGKKKEVKKETGLGLSYKKDENFGEWYSEVVVNGE------------MIEY-YDISGCYIIRPWAMSIWETMQKFFDAEI 82 (511)
Q Consensus 16 ~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~a~------------~~d~-~~~~G~~~~~P~g~~i~~~I~~~~~~~~ 82 (511)
-||++|.+|||+||++||+++.+++|.+. +++|. +.++ ..++|+++|+|.|++|+++|++++++.+
T Consensus 257 lg~~~~~~lqRi~G~sfp~~~~l~~~~~~-~~e~~~rdH~~lg~~~~lf~~~~~~~G~~~~lP~g~~i~~~l~~~~~~~~ 335 (686)
T PLN02908 257 RGDVDRESLQRVYGISFPDKKLLKEYKHR-IEEAKKRDHRLLGQKQELFFFHELSPGSCFFLPHGARIYNKLMDFIREQY 335 (686)
T ss_pred cCCCcchhhEEEeeeccCChHHHHHHHhh-hhhccccCHHHHHHhcCCeeecCCCCcceEEechHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999998 56664 2222 1479999999999999999999999999
Q ss_pred HhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhhhhhcCCCCcccccccc
Q 010413 83 KKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWC 162 (511)
Q Consensus 83 ~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g 162 (511)
.++||++|.||+|.+.++|. .|||+++|.++||+++. + +++++||||+|++|+.+|+++.+||++||+|++++|
T Consensus 336 ~~~G~~ev~tP~l~~~~l~~-~sGh~~~~~~~mf~~~~-~----~~~~~Lrp~~~~~~~~~~~~~~~s~r~LPlr~~~~g 409 (686)
T PLN02908 336 WERGYDEVITPNIYNMDLWE-TSGHAAHYKENMFVFEI-E----KQEFGLKPMNCPGHCLMFAHRVRSYRELPLRLADFG 409 (686)
T ss_pred HHcCCEEEECCccccHHHHh-hcCCccccchhccEEec-C----CeeEEEcCCCcHHHHHHHhccccChhhCCHhHEEee
Confidence 99999999999999999995 69999999999999954 4 489999999999999999999999999999999999
Q ss_pred ceEeeeecCC-CCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhhhcccccccccccccc------------
Q 010413 163 NVVRWEFSNP-TPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELEK------------ 229 (511)
Q Consensus 163 ~vfR~E~~~~-~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~lg~ip~~~g~~~~~ek------------ 229 (511)
+|||+|.++. .||+|+|||+|+|+|+ ||+++++.+|+..+++++.++|+.|| +++.+..++++++
T Consensus 410 ~~fR~E~~~~l~Gl~RvReF~q~d~~i-f~~~~q~~~e~~~~l~~~~~v~~~lG-~~~~~~ls~r~~~~~g~~~~w~~ae 487 (686)
T PLN02908 410 VLHRNELSGALTGLTRVRRFQQDDAHI-FCREDQIKDEVKGVLDFLDYVYEVFG-FTYELKLSTRPEKYLGDLETWDKAE 487 (686)
T ss_pred ccccCCCCcCCcCccccccEEEeeEEE-EcCHHHHHHHHHHHHHHHHHHHHHCC-CcEEEEEeCCccccCCCHHHHHHHH
Confidence 9999998874 5999999999999999 99999999999999999999999998 7887765554332
Q ss_pred ------------------ccCccceeeEEEee-cCCCcccccccccccccccccceeeEEeCCCCc--e--eeeeeeccc
Q 010413 230 ------------------FAGGLYTTTVEAFI-PNTGRGIQGATSHCLGQNFSKMFEIIFENEKGE--K--AMAWQNSWA 286 (511)
Q Consensus 230 ------------------~~ga~y~~~ie~~~-p~~gr~lq~gt~~~lg~~~s~~f~i~y~~~~g~--~--~~v~~~~~G 286 (511)
+.||+|+|+||..+ ++++|.+|++|++ ++++++.+|++.|.++++. . ..+|++.+|
T Consensus 488 ~~l~~~ld~~~~~~~~~~g~~afygpkid~~~~d~l~r~~~~~t~q-~df~lp~~f~L~Y~~e~~~~~~~pv~ihrai~G 566 (686)
T PLN02908 488 AALTEALNAFGKPWQLNEGDGAFYGPKIDITVSDALKRKFQCATVQ-LDFQLPIRFKLSYSAEDEAKIERPVMIHRAILG 566 (686)
T ss_pred HHHHHHHHHcCCCcEECCCceeecccceEEEEEeccCCEeecccee-ecccCHhhcCCEEECCCCCcCCCCEEEEeCceE
Confidence 34578999998765 8899999999999 9999999999999988765 2 368999999
Q ss_pred cccceeeEEEEEeeCCCCcccCCcccceeEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeeecCCCCCCCCCCCCcc
Q 010413 287 YTTRTIGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHW 366 (511)
Q Consensus 287 i~eRli~~Lie~~~d~~G~~lP~~laP~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~~lg~k~~~a 366 (511)
.+||++++|++++ ++.||+|++|.||+|+|++ ++..++|.+|++.||++|++|++|.++ .++++|+++|
T Consensus 567 siERli~iL~e~~----~g~~p~wlsp~qv~Vipv~------~~~~~~A~~va~~LR~~Gi~vevd~~~-~~l~kkir~A 635 (686)
T PLN02908 567 SVERMFAILLEHY----AGKWPFWLSPRQAIVVPIS------EKSQDYAEEVRAQLHAAGFYVDVDVTD-RKIQKKVREA 635 (686)
T ss_pred hHHHHHHHHHHHc----CCCCCCCCCCceEEEEEEC------HHHHHHHHHHHHHHHHCCCEEEEECCC-CCHHHHHHHH
Confidence 9999999999975 5789999999999999998 457799999999999999999999987 6999999999
Q ss_pred cccCceeEeeeCcccccCCcEEEEEccCCCccccccchHHHHHHHHHHH
Q 010413 367 EMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLDE 415 (511)
Q Consensus 367 e~~giP~~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~el~~~i~~~l~~ 415 (511)
++.|+|++|+||++|+++|+|+||+|+++++..++++++++.+.++.++
T Consensus 636 ~~~g~~~viivG~~E~~~~~V~vr~~~~~~q~~i~l~el~~~l~~~~~~ 684 (686)
T PLN02908 636 QLAQYNYILVVGEAEAATGTVNVRTRDNVVHGEKKIEELLTEFKEERAE 684 (686)
T ss_pred HHcCCCEEEEECchHHhCCEEEEEECCCCceeeeeHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999998888766553
No 10
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3e-67 Score=573.90 Aligned_cols=357 Identities=24% Similarity=0.401 Sum_probs=316.7
Q ss_pred HHhhhccceeeeeeeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccC
Q 010413 43 SEVVVNGEMIEYYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSG 122 (511)
Q Consensus 43 ~~~~~~a~~~d~~~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g 122 (511)
++|+.+|++++. .++|+++|+|.|+++|++|++++++.++++||++|.||+|++.++| +.+||++.|.+|||+|+|.+
T Consensus 23 ~~ll~~ag~i~~-~~~G~~~~lP~g~~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l~-~~sg~~~~~~~emf~~~d~~ 100 (565)
T PRK09194 23 HQLLLRAGYIRK-LASGIYTYLPLGLRVLRKIENIVREEMNKIGAQEVLMPALQPAELW-QESGRWEEYGPELLRLKDRH 100 (565)
T ss_pred HHHHHhCCCccc-cCCCeeEECccHHHHHHHHHHHHHHHHHHcCCEEEECcccCcHHHH-hhcCCccccchhceEEecCC
Confidence 378899999975 6799999999999999999999999999999999999999999999 56999999999999999876
Q ss_pred CCCCCCceeecCCCccccchhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHH
Q 010413 123 ESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQ 202 (511)
Q Consensus 123 ~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~ 202 (511)
+++++||||+|+.++.++++++.||++||+|+|||++|||+|.+|+.||+|+|||+|.|+|+|+.+.+++++++..
T Consensus 101 ----~~~l~LrPt~e~~~~~~~~~~~~s~~~LP~r~yqi~~~fR~E~rp~~Gl~R~reF~q~d~~~f~~~~~~a~~~~~~ 176 (565)
T PRK09194 101 ----GRDFVLGPTHEEVITDLVRNEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEESLDETYDA 176 (565)
T ss_pred ----CCEEEECCCChHHHHHHHHhhhhhcccCCeEEEEeeCCccCCCCCCCcccccccEEEeeEEEEcCChHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999999988889999999999
Q ss_pred HHHHHHHHHhhhhcccccccccc--------------------------c-------ccc--------------------
Q 010413 203 ILELYRRIYEEFLAVPVIKGKKS--------------------------E-------LEK-------------------- 229 (511)
Q Consensus 203 ~l~~~~~i~~~lg~ip~~~g~~~--------------------------~-------~ek-------------------- 229 (511)
++++|.++|+.|| +||.+.... . .|+
T Consensus 177 ~~~~~~~i~~~lg-l~~~~~~~~~g~~gg~~s~e~~~~~~~g~~~~~~c~~c~~~~n~e~a~~~~~~~~~~~~~~~~v~~ 255 (565)
T PRK09194 177 MYQAYSRIFDRLG-LDFRAVEADSGAIGGSASHEFMVLADSGEDTIVYSDESDYAANIEKAEALPPPRAAAEEALEKVDT 255 (565)
T ss_pred HHHHHHHHHHHhC-CccEEEEcccccCCCceeEEEEEecCCCceEEEEeCCCCcchhhhhhcccCCCCccccccceeecC
Confidence 9999999999998 676532000 0 000
Q ss_pred -------------------------------c-------------------c---------------------Cc---c-
Q 010413 230 -------------------------------F-------------------A---------------------GG---L- 234 (511)
Q Consensus 230 -------------------------------~-------------------~---------------------ga---~- 234 (511)
+ . |+ +
T Consensus 256 p~~~t~~e~a~~lg~~~~~~~KtLi~~~~~~~~lvvvp~d~~vn~~kl~~~lg~~~l~~a~~eel~~~~g~~~G~v~P~G 335 (565)
T PRK09194 256 PNAKTIEELAEFLNVPAEKTVKTLLVKADGELVAVLVRGDHELNEVKLENLLGAAPLELATEEEIRAALGAVPGFLGPVG 335 (565)
T ss_pred CCCCcHHHHHHHhCCCHHHeeEEEEEEeCCeEEEEEeecchhhhHHHHHhhcCCcccccCCHHHHHHhhCCCCCccCccc
Confidence 0 0 00 0
Q ss_pred ----------------------------------ceeeE------E------E-eecCCC------cccccccccccccc
Q 010413 235 ----------------------------------YTTTV------E------A-FIPNTG------RGIQGATSHCLGQN 261 (511)
Q Consensus 235 ----------------------------------y~~~i------e------~-~~p~~g------r~lq~gt~~~lg~~ 261 (511)
++.++ | . .+|.++ |++|+|++|+||++
T Consensus 336 l~~~v~viiD~sl~~~~~~~~gan~~g~h~~~~~~~~d~~~~~~~d~~~~~~g~~c~~c~~~l~~~~~iEvGh~f~lG~~ 415 (565)
T PRK09194 336 LPKDVPIIADRSVADMSNFVVGANEDDYHYVGVNWGRDFPVPEVADLRNVVEGDPSPDGGGTLKIARGIEVGHIFQLGTK 415 (565)
T ss_pred CCCCceEEEeccccccccccccCCCCCceeeCCccCcCCCcccccchhhhhcCCCCCCCCceeEEeeeEEEEEEecCCcc
Confidence 00000 0 0 014433 78999999999999
Q ss_pred cccceeeEEeCCCCceeeeeeecccc-ccceeeEEEEEeeCCCCcccCCcccceeEEEEeeccCccchhHHHHHHHHHHH
Q 010413 262 FSKMFEIIFENEKGEKAMAWQNSWAY-TTRTIGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVE 340 (511)
Q Consensus 262 ~s~~f~i~y~~~~g~~~~v~~~~~Gi-~eRli~~Lie~~~d~~G~~lP~~laP~qV~Iipi~~~~~~~~~~~~~a~~i~~ 340 (511)
||++|+++|.|++|+.++++++|||+ ++|++++|+|+|+|++|++||+++||+||+|+|++.++ ++..++|.+|++
T Consensus 416 ys~~~~~~~~~~~g~~~~~~m~~~gIGv~Rli~al~e~~~d~~gl~~P~~iaP~~v~Iv~~~~~~---~~~~~~a~~i~~ 492 (565)
T PRK09194 416 YSEAMNATVLDENGKAQPLIMGCYGIGVSRLVAAAIEQNHDEKGIIWPKAIAPFDVHIVPVNMKD---EEVKELAEKLYA 492 (565)
T ss_pred hhhccCCEEECCCCCEEeEEEeeEechHHHHHHHHHHhhccccCccCCCccCCceEEEEECCCCc---HHHHHHHHHHHH
Confidence 99999999999999999999999999 89999999999999999999999999999999997432 467899999999
Q ss_pred HHHHcCceeeecCCCCCCCCCCCCcccccCceeEeeeCcccccCCcEEEEEccCCCccccccchHHHHHH
Q 010413 341 TLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIK 410 (511)
Q Consensus 341 ~Lr~~Girv~~D~~~~~~lg~k~~~ae~~giP~~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~el~~~i~ 410 (511)
.|+++|++|.+|+++ .++|+||++|+++|||++|+||++|+++++|+|++|++++|..|+++++++.|.
T Consensus 493 ~L~~~gi~v~~Ddr~-~~~g~k~~~ad~~GiP~~iiiG~~e~~~~~v~v~~r~~ge~~~v~~~~l~~~i~ 561 (565)
T PRK09194 493 ELQAAGIEVLLDDRK-ERPGVKFADADLIGIPHRIVVGDRGLAEGIVEYKDRRTGEKEEVPVDELVEFLK 561 (565)
T ss_pred HHhccCCeEEEECCC-CCHHHHHHHHHhcCCCEEEEEcCccccCCeEEEEECCCCceEEEeHHHHHHHHH
Confidence 999999999999998 599999999999999999999999999999999999999999999999987764
No 11
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=100.00 E-value=3.9e-67 Score=569.33 Aligned_cols=357 Identities=21% Similarity=0.369 Sum_probs=316.7
Q ss_pred HHhhhccceeeeeeeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccC
Q 010413 43 SEVVVNGEMIEYYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSG 122 (511)
Q Consensus 43 ~~~~~~a~~~d~~~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g 122 (511)
++|+.+|++++. .++|+++|+|.|++++++|++++++++.++||++|.||+|++.++| +++||++.|.+|||+|+|++
T Consensus 23 ~~ll~rag~i~~-~~~G~~~~lP~g~rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~el~-~~sg~~~~~~~emf~~~dr~ 100 (568)
T TIGR00409 23 HQLLLRAGFIRR-LGSGLYNWLPLGLRVLKKVENIVREEMNKDGAIEVLLPALQPAELW-QESGRWDTYGPELLRLKDRK 100 (568)
T ss_pred HHHHHhCCCccc-cCCceEEECChHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHH-hhcCCCCccchhcEEEecCC
Confidence 478899999975 6799999999999999999999999999999999999999999999 56999999999999999876
Q ss_pred CCCCCCceeecCCCccccchhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHH
Q 010413 123 ESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQ 202 (511)
Q Consensus 123 ~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~ 202 (511)
+++++||||+|+.++.++++++.||++||+|+|||++|||+|.+|+.||+|+|||+|.|+|+|+.+.+++++++..
T Consensus 101 ----~~~l~LrPT~Ee~~t~~~~~~i~syr~LPlrlyqi~~~fR~E~rpr~Gl~R~REF~~~d~~~f~~~~~~a~~e~~~ 176 (568)
T TIGR00409 101 ----GREFVLGPTHEEVITDLARNEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHSDEESLDATYQK 176 (568)
T ss_pred ----CCEEEEcCCCcHHHHHHHHHHHhhccccCeEEEEeeCEeeCCCCCCCCccccccEEEEEEEEEeCChHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999999999989999999999
Q ss_pred HHHHHHHHHhhhhcccccccccc--------------------------------------------c--c-----c---
Q 010413 203 ILELYRRIYEEFLAVPVIKGKKS--------------------------------------------E--L-----E--- 228 (511)
Q Consensus 203 ~l~~~~~i~~~lg~ip~~~g~~~--------------------------------------------~--~-----e--- 228 (511)
|+++|.++|++|| +||++...+ . . +
T Consensus 177 ~~~~y~~if~~Lg-L~~~~v~~~~g~~gg~~s~ef~~~~~~ge~~i~~c~~~~y~an~e~a~~~~~~~~~~~~~~~~~~~ 255 (568)
T TIGR00409 177 MYQAYSNIFSRLG-LDFRPVQADSGAIGGSASHEFMVLAESGEDTIVYSDESDYAANIELAEALAPGERNAPTAELDKVD 255 (568)
T ss_pred HHHHHHHHHHHhC-CcceEEEeccccCCCccceEEeEecCCCceEEEEecCcccchhhhhhcccCccccccccccceeec
Confidence 9999999999998 675421000 0 0 0
Q ss_pred ------------------------------c------------------------------------------------c
Q 010413 229 ------------------------------K------------------------------------------------F 230 (511)
Q Consensus 229 ------------------------------k------------------------------------------------~ 230 (511)
. |
T Consensus 256 tp~~~ti~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~v~~rgd~~vn~~k~~~~~g~~~~~~~a~~~~~~~~~g~~~g~ 335 (568)
T TIGR00409 256 TPNTKTIAELVECFNLPAEKVVKTLLVKAVDKSEPLVALLVRGDHELNEVKAPNLLLVAQVLELATEEEIFQKIASGPGS 335 (568)
T ss_pred CCCCCcHHHHHHHhCCCHhHeeeEEEEEecCCccceEEEEecCcchhhHHHHHHHhccCcccccCCHHHHHHhhCCCCCc
Confidence 0 0
Q ss_pred -------------------------cCccc----------eeeEE--Ee-----------ecC------CCccccccccc
Q 010413 231 -------------------------AGGLY----------TTTVE--AF-----------IPN------TGRGIQGATSH 256 (511)
Q Consensus 231 -------------------------~ga~y----------~~~ie--~~-----------~p~------~gr~lq~gt~~ 256 (511)
.||.+ +.++. .+ +|. ..|++|+|++|
T Consensus 336 ~gpv~~~~~~~i~~D~~~~~~~~~~~gan~~~~h~~~~~~~rd~~~~~~~d~~~~~eGd~cp~c~~~l~~~rgIEvGhiF 415 (568)
T TIGR00409 336 LGPVNINGGIPVLIDQTVALMSDFAAGANADDKHYFNVNWDRDVAIPEVADIRKVKEGDPSPDGQGTLKIARGIEVGHIF 415 (568)
T ss_pred cCccccccCceEEechhhhcccccccccCCCCceeecccccccCCccccchhhhhhccCCCCCCCCcccccceEEEEEec
Confidence 01100 00000 00 122 24889999999
Q ss_pred ccccccccceeeEEeCCCCceeeeeeecccc-ccceeeEEEEEeeCCCCcccCCcccceeEEEEeeccCccchhHHHHHH
Q 010413 257 CLGQNFSKMFEIIFENEKGEKAMAWQNSWAY-TTRTIGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYKDADTQGIFDAC 335 (511)
Q Consensus 257 ~lg~~~s~~f~i~y~~~~g~~~~v~~~~~Gi-~eRli~~Lie~~~d~~G~~lP~~laP~qV~Iipi~~~~~~~~~~~~~a 335 (511)
+||++||++|+++|.|++|+.++++++|||+ ++|+|++++|+|+|++|++||+++||+||+|+|+..++ ++..++|
T Consensus 416 ~LG~kYS~~~~~~~~d~~g~~~~~~mgcyGIGvsRli~aiie~~~D~~Gl~wP~~iAP~qV~Iip~~~~~---~~~~~~a 492 (568)
T TIGR00409 416 QLGTKYSEALKATFLDENGKNQFMTMGCYGIGVSRLVSAIAEQHHDERGIIWPKAIAPYDVVIVVMNMKD---EEQQQLA 492 (568)
T ss_pred cchhhhHHhcCCEEECCCCCEEEEEEeCCcchHHHHHHHHHHHhCccCCCcCChhhCCeEEEEEEcCCCh---HHHHHHH
Confidence 9999999999999999999999999999999 89999999999999999999999999999999997543 4688999
Q ss_pred HHHHHHHHHcCceeeecCCCCCCCCCCCCcccccCceeEeeeCcccccCCcEEEEEccCCCccccccchHHHHHH
Q 010413 336 TATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIK 410 (511)
Q Consensus 336 ~~i~~~Lr~~Girv~~D~~~~~~lg~k~~~ae~~giP~~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~el~~~i~ 410 (511)
.+|++.|+++|++|.+|+|+ .++|+||++|+++|+|++|+||++++++++|+|++|+++++..|+++++++.|.
T Consensus 493 ~~l~~~L~~~gi~v~~DDr~-~~~G~K~~dadliGiP~~i~vG~~~l~~~~Vei~~R~~~~~~~v~~~~l~~~i~ 566 (568)
T TIGR00409 493 EELYSELLAQGVDVLLDDRN-ERAGVKFADSELIGIPLRVVVGKKNLDNGEIEVKKRRNGEKQLIKKDELVECLE 566 (568)
T ss_pred HHHHHHHHhCCCEEEEECCC-CCHHHHHHhhhhcCCCEEEEECCCcccCCeEEEEEcCCCceEEEEHHHHHHHHh
Confidence 99999999999999999998 599999999999999999999999999999999999999999999999988764
No 12
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=100.00 E-value=1.4e-66 Score=567.56 Aligned_cols=356 Identities=20% Similarity=0.242 Sum_probs=322.3
Q ss_pred Hhhhccceeeeee--eceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEecc
Q 010413 44 EVVVNGEMIEYYD--ISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKS 121 (511)
Q Consensus 44 ~~~~~a~~~d~~~--~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~ 121 (511)
+|+++.+++|+.+ .+|++.|+|.|+.|++.|++++++.+.++||++|.||.+...++| +.+||+++|.++||++++.
T Consensus 201 ~Lg~~~~L~d~~~~s~~G~~~~~P~G~~i~~~L~~~~~~~~~~~G~~~V~tP~~~~~~~~-~~sgh~~~f~e~my~v~~~ 279 (613)
T PRK03991 201 KLMREKELADYEPASDVGHMRYYPKGRLIRDLLEDYVYNLVVELGAMPVETPIMYDLSHP-AIREHADKFGERQYRVKSD 279 (613)
T ss_pred HHHHHCCCcccccccCeeeEEEEcHHHHHHHHHHHHHHHHHHHCCCEEEECCeecChhHH-hhcccccccchhceEecCC
Confidence 5566778888854 689999999999999999999999999999999999999999999 5899999999999999754
Q ss_pred CCCCCCCceeecCCCccccchhhhhhhhcCCCCccccccccc-eEeeeecCC-CCcccchhhhcccCcccccC-hhhhHH
Q 010413 122 GESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCN-VVRWEFSNP-TPFIRSREFLWQEGHTAFAT-KSEADD 198 (511)
Q Consensus 122 g~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~-vfR~E~~~~-~Gl~R~REF~q~e~~~~~~~-~e~a~~ 198 (511)
+++++||||+|++++.+|+++++|||+||+|++|+|+ +||+|+++. .||+|+|||+|.|+|+ +|+ .+||.+
T Consensus 280 -----~e~l~Lrp~~c~~~~~~~~~~~~SyrdLPlr~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~-f~~~~eqa~~ 353 (613)
T PRK03991 280 -----KKDLMLRFAACFGQFLMLKDMTISYKNLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHT-LCKDMEQAME 353 (613)
T ss_pred -----CceEEEecCCCHHHHHHHhCCcCchhhCChhhheecchheeCCCCCCCcCcccccceEeeeEEE-EECCHHHHHH
Confidence 3789999999999999999999999999999999999 999999885 6999999999999999 666 699999
Q ss_pred HHHHHHHHHHHHHhhhhcccccccccccc-------------------------ccccCccceeeEEEee-cCCCccccc
Q 010413 199 EVLQILELYRRIYEEFLAVPVIKGKKSEL-------------------------EKFAGGLYTTTVEAFI-PNTGRGIQG 252 (511)
Q Consensus 199 e~~~~l~~~~~i~~~lg~ip~~~g~~~~~-------------------------ek~~ga~y~~~ie~~~-p~~gr~lq~ 252 (511)
|+..+++++.++|+.|| +||.+..++.. ....+++|++++|..+ +.+||.||+
T Consensus 354 e~~~~l~~~~~i~~~lG-l~~~~~~~~t~df~~~~~~~l~~~l~~~g~~~~~~~~~g~~~~yg~kie~~~~d~~gr~~q~ 432 (613)
T PRK03991 354 EFEKQYEMILETGEDLG-RDYEVAIRFTEDFYEENKDWIVELVKREGKPVLLEILPERKHYWVLKVEFAFIDSLGRPIEN 432 (613)
T ss_pred HHHHHHHHHHHHHHHcC-CCeEEEecCHHHHhhhHHHHHHHHHHHcCCCEEecccCCccccCcCcEEEEEeCCCCCEEEE
Confidence 99999999999999998 78765432210 1234578999999765 678999999
Q ss_pred ccccccccccccceeeEEeCCCCcee---eeeeeccccccceeeEEEEEeeCC----CCcccCCcccceeEEEEeeccCc
Q 010413 253 ATSHCLGQNFSKMFEIIFENEKGEKA---MAWQNSWAYTTRTIGVMVMVHGDD----KGLVLPPRVASVQVIVVPVPYKD 325 (511)
Q Consensus 253 gt~~~lg~~~s~~f~i~y~~~~g~~~---~v~~~~~Gi~eRli~~Lie~~~d~----~G~~lP~~laP~qV~Iipi~~~~ 325 (511)
||+| +|++++++|+++|.|.+|+.+ .+|+.++|+++|+|++|+|+|+|+ .|++||+||||+||+|||++
T Consensus 433 ~T~q-ld~~~~~~f~l~y~d~~g~~~~Pviih~~~~GsieR~i~aliE~~~~~~~~g~gl~~P~~lAP~qV~IIpi~--- 508 (613)
T PRK03991 433 PTVQ-IDVENAERFGIKYVDENGEEKYPIILHCSPTGSIERVIYALLEKAAKEEEEGKVPMLPTWLSPTQVRVIPVS--- 508 (613)
T ss_pred eeee-cCcccchhCCCEEECCCCCEeeCEEEEECCEeHHHHHHHHHHHHhCCccccCceeEcCccccCceEEEEEeC---
Confidence 9999 999999999999999999874 357778888899999999999998 88999999999999999997
Q ss_pred cchhHHHHHHHHHHHHHHHcCceeeecCCCCCCCCCCCCcccccCceeEeeeCcccccCCcEEEEEccCCCccccccchH
Q 010413 326 ADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSL 405 (511)
Q Consensus 326 ~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~~lg~k~~~ae~~giP~~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~el 405 (511)
++..++|.+|++.|+++|++|++|+++ .++|+||++|++.|+|++|+||++|+++|+|+|++|+++++..|+++++
T Consensus 509 ---e~~~~~A~eIa~~Lr~~GirV~lDdr~-~slgkKir~A~~~GiP~iIVIG~kEle~g~VtVr~R~t~eq~~v~l~el 584 (613)
T PRK03991 509 ---ERHLDYAEEVADKLEAAGIRVDVDDRD-ESLGKKIRDAGKEWIPYVVVIGDKEMESGKLTVTIREESEKVEMTLEEL 584 (613)
T ss_pred ---HHHHHHHHHHHHHHHhCCCEEEEECCC-CCHHHHHHHHHHcCCCEEEEECcchhhCCeEEEEECCCCceEEeeHHHH
Confidence 467899999999999999999999998 5999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 010413 406 VERIKELLDE 415 (511)
Q Consensus 406 ~~~i~~~l~~ 415 (511)
++.|.++++.
T Consensus 585 i~~l~~~~~~ 594 (613)
T PRK03991 585 IERIKEETKG 594 (613)
T ss_pred HHHHHHHHhc
Confidence 8888777653
No 13
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-66 Score=557.03 Aligned_cols=382 Identities=21% Similarity=0.344 Sum_probs=344.5
Q ss_pred CCCCccccccceeecceecccCChhhhHHHhhhccc---------eeeee-----eeceeEEeccchHHHHHHHHHHHHH
Q 010413 15 GGGKKKEVKKETGLGLSYKKDENFGEWYSEVVVNGE---------MIEYY-----DISGCYIIRPWAMSIWETMQKFFDA 80 (511)
Q Consensus 15 ~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~a~---------~~d~~-----~~~G~~~~~P~g~~i~~~I~~~~~~ 80 (511)
--||++|+|+||+||++|++..++..+...+ ++|+ .+|++ ..+|++.|+|.|+.+++.|+++++.
T Consensus 154 w~g~~~~~~l~riygta~~~~~~l~~~l~~~-eea~krdHrklg~el~LF~~~~~~~~G~~~~~pkG~~ir~~le~y~~~ 232 (589)
T COG0441 154 WRGDENNEMLQRIYGTAFADKKELEAYLKRL-EEAKKRDHRKLGKELDLFSFSPEEGPGLPFWHPKGATIRNLLEDYVRT 232 (589)
T ss_pred hccCCCCcceeEEeccccCCHHHHHHHHhhh-hhccCCchHhHHHhhcceeeccccCCcceEECCCcccHHHHHHHHHHH
Confidence 4699999999999999999999999998884 4442 33333 4889999999999999999999999
Q ss_pred HHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhhhhhcCCCCcccccc
Q 010413 81 EIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQ 160 (511)
Q Consensus 81 ~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q 160 (511)
...++||++|.||++...++| +.||||+.|.++||.+... +++|+||||+||+|+.+|++..+|||+||+|+++
T Consensus 233 ~~~~~Gy~~V~TP~~~~~~l~-~~SGH~~~y~e~mf~~~~~-----~~~~~lKpmNCpgh~~ifk~~~~SYR~LP~r~~E 306 (589)
T COG0441 233 KLRSYGYQEVKTPVLADLELW-ELSGHWDNYKEDMFLTESD-----DREYALKPMNCPGHILIFKSGLRSYRELPLRLAE 306 (589)
T ss_pred HHHhcCceEecCCeeeecccc-hhccchhhccccceeeccC-----ChhheeeeccCHhHHHHHhcCCcceeccchhhhh
Confidence 999999999999999999999 5799999999999988753 3899999999999999999999999999999999
Q ss_pred ccceEeeeecCCC-CcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhhhccccccccccc---------cc--
Q 010413 161 WCNVVRWEFSNPT-PFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSE---------LE-- 228 (511)
Q Consensus 161 ~g~vfR~E~~~~~-Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~lg~ip~~~g~~~~---------~e-- 228 (511)
+|.|||+|.++.. ||.|+|.|+|.|+|+ +|+++|+.+|+..++++...+++.+|+-.|.+..+++ |+
T Consensus 307 ~g~v~R~E~SGal~GL~RvR~ftqdDaHi-fc~~dQi~~E~~~~~~~i~~v~~~fg~~~y~~~ls~r~k~ig~d~~W~~a 385 (589)
T COG0441 307 FGYVYRYEKSGALHGLMRVRGFTQDDAHI-FCTPDQIKDEFKGILELILEVYKDFGFTDYEVKLSTRPKFIGSDEMWDKA 385 (589)
T ss_pred cceeecccCcchhhccccccceeecccce-eccHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEecCCcccCChhhhHHH
Confidence 9999999999888 999999999999999 9999999999999999999999999843354433332 11
Q ss_pred ------------------cccCccceeeEEEee-cCCCcccccccccccccccccceeeEEeCCCCcee---eeeeeccc
Q 010413 229 ------------------KFAGGLYTTTVEAFI-PNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKA---MAWQNSWA 286 (511)
Q Consensus 229 ------------------k~~ga~y~~~ie~~~-p~~gr~lq~gt~~~lg~~~s~~f~i~y~~~~g~~~---~v~~~~~G 286 (511)
.+.||+|+|+||..+ +++||.||+||+| ++++++++|+++|.+.+|+.+ ++|++.+|
T Consensus 386 ~~~l~~al~~~~~~~~~~~G~~aFyGPKid~~v~Dalgr~~q~~TIQ-lDf~lpeRF~l~Yv~~d~~~~~PvmiHrai~G 464 (589)
T COG0441 386 EAALREALKEIGVEYVEEPGEGAFYGPKIDFQVKDALGREWQLGTIQ-LDFNLPERFDLEYVDEDGEKKRPVIIHRAILG 464 (589)
T ss_pred HHHHHHHHHhhCceeeecCCceEEECcccceEEEeccCcceecceEE-EecCChhhceEEEEcCCCCccCCEEEEeccch
Confidence 135789999999866 8899999999999 999999999999999888654 78999999
Q ss_pred cccceeeEEEEEeeCCCCcccCCcccceeEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeeecCCCCCCCCCCCCcc
Q 010413 287 YTTRTIGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHW 366 (511)
Q Consensus 287 i~eRli~~Lie~~~d~~G~~lP~~laP~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~~lg~k~~~a 366 (511)
+++|++++|+|++. +.+|.|+||+||+|+||+ ++..+||.++++.|++.||||++|++++ ++|+|++.|
T Consensus 465 SiERfi~iLiE~~~----G~~P~WLaPvQv~VipV~------~~~~~ya~~v~~~L~~~giRvdvD~~~e-~l~kKIR~a 533 (589)
T COG0441 465 SIERFIGILLEHYA----GALPTWLAPVQVRVIPVA------DEHLDYAKEVAEKLRKAGIRVDIDDRNE-KLGKKIREA 533 (589)
T ss_pred hHHHHHHHHHHhcc----CCCcccCCccEEEEEEeC------hHHHHHHHHHHHHHHHcCCeeeeccccc-chHHHHHHH
Confidence 99999999999763 599999999999999999 3567999999999999999999999985 999999999
Q ss_pred cccCceeEeeeCcccccCCcEEEEEccCCCccccccchHHHHHHHHHHHH
Q 010413 367 EMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLDEI 416 (511)
Q Consensus 367 e~~giP~~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~el~~~i~~~l~~~ 416 (511)
...+|||+|+||++|+++++|++|+|.+.++..++++++++.+++.....
T Consensus 534 ~~~kipyiiVvG~kE~e~~~v~vR~r~~~~~~~~~l~e~i~~ik~e~~~~ 583 (589)
T COG0441 534 GTQKIPYVIVVGDKEVETGTVVVRRRGGKQQKSMTLEELVEELKKEIEGR 583 (589)
T ss_pred HhcCCCEEEEEchhhhccCceEEEEccCCccccccHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999998888776653
No 14
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.5e-65 Score=563.77 Aligned_cols=380 Identities=21% Similarity=0.339 Sum_probs=337.1
Q ss_pred CCCccccccceeecceecccCChhhhHHHhhhcc------------ceeeee--eeceeEEeccchHHHHHHHHHHHHHH
Q 010413 16 GGKKKEVKKETGLGLSYKKDENFGEWYSEVVVNG------------EMIEYY--DISGCYIIRPWAMSIWETMQKFFDAE 81 (511)
Q Consensus 16 ~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~a------------~~~d~~--~~~G~~~~~P~g~~i~~~I~~~~~~~ 81 (511)
.||+++++++|+||++|++++.+.+|.+.+ +++ ++++.. .++|+++|+|.|+.+++.|++++++.
T Consensus 141 ~~~~~~~~l~Ri~g~~~~~~~~l~~~~~~~-~e~~~~dh~~l~~~~~l~~~~~~~~~G~~~~~p~~~~~~~~l~~~~~~~ 219 (575)
T PRK12305 141 RGDEKNPQLQRIYGTAWETKEELKEYLKRL-EEAKKRDHRKLGKELDLFSFPDEIGPGLPVWHPKGAIIRREIEDYLRKE 219 (575)
T ss_pred CCCCCCcceEEEEEEecCCHHHHHHHHHHH-HHhhhccHHHHHHhcCccccccccCCcceEEeccHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999874 333 233432 48999999999999999999999999
Q ss_pred HHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhhhhhcCCCCccccccc
Q 010413 82 IKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQW 161 (511)
Q Consensus 82 ~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~ 161 (511)
+.++||++|.||+|++.++|.+ +||++.|.++||.++|.+ ++.++||||+|++++++|+++..||++||+|++|+
T Consensus 220 ~~~~Gy~ev~tP~le~~~l~~~-sg~~~~~~~~my~~~d~~----~~~~~LRP~~~~~~~~~~~~~~~s~~~lP~r~~~~ 294 (575)
T PRK12305 220 HLKRGYEFVYTPHIGKSDLWKT-SGHLDNYKENMFPPMEID----EEEYYLKPMNCPGHILIYKSRLRSYRDLPLRLAEF 294 (575)
T ss_pred HHHcCCEEEECCccCCHHHHhh-cCCcccchhhcccccccC----CceEEEecCCCHHHHHHHhcccCChhhCCHhhEEe
Confidence 9999999999999999999975 899999999999998876 58999999999999999999999999999999999
Q ss_pred cceEeeeecC-CCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhhhccc-cc--ccccc---------ccc
Q 010413 162 CNVVRWEFSN-PTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVP-VI--KGKKS---------ELE 228 (511)
Q Consensus 162 g~vfR~E~~~-~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~lg~ip-~~--~g~~~---------~~e 228 (511)
|+|||+|.++ .+|+.|+|||+|+|+|+ +++++++.+|+.++++++.++|+.|| ++ +. ++.++ .|+
T Consensus 295 g~~fR~E~~~~~~Gl~R~reF~q~~~~i-f~~~~~~~~e~~e~i~l~~~~~~~lg-l~~~~i~l~~r~~~~~~g~~~~~~ 372 (575)
T PRK12305 295 GTVYRYEKSGVLHGLTRVRGFTQDDAHI-FCTPDQIEDEILKVLDFVLELLKDFG-FKDYYLELSTREPEKYVGDDEVWE 372 (575)
T ss_pred cccccCCCCCCCcCcccccCeEEcceEE-EeCHHHHHHHHHHHHHHHHHHHHHcC-CCeEEEEEeCCChhhccCCHHHHH
Confidence 9999999763 35999999999999998 77889998898999999999999998 56 32 22221 111
Q ss_pred --------------------cccCccceeeEEEee-cCCCcccccccccccccccccceeeEEeCCCCcee---eeeeec
Q 010413 229 --------------------KFAGGLYTTTVEAFI-PNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKA---MAWQNS 284 (511)
Q Consensus 229 --------------------k~~ga~y~~~ie~~~-p~~gr~lq~gt~~~lg~~~s~~f~i~y~~~~g~~~---~v~~~~ 284 (511)
...+++|++++|..+ +.+||.+|++|++ ++++++.+||++|.+.+|... ++|+++
T Consensus 373 ~~~~~l~~~l~~~g~~~~~~~~~~~~y~~~~~~~~~d~~g~~~~~~t~~-~~~~~~~~fdl~y~~~~~~~~~p~~ih~~~ 451 (575)
T PRK12305 373 KATEALREALEELGLEYVEDPGGAAFYGPKIDVQIKDALGREWQMSTIQ-LDFNLPERFDLEYTAEDGKRQRPVMIHRAL 451 (575)
T ss_pred HHHHHHHHHHHhcCCCcEecCCCcccccccEEEEeeccCCCceecccee-eecccHhhCCCEEECCCCCccCceEEEccc
Confidence 123567999998755 6789999999999 999999999999999887643 678999
Q ss_pred cccccceeeEEEEEeeCCCCcccCCcccceeEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeeecCCCCCCCCCCCC
Q 010413 285 WAYTTRTIGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYS 364 (511)
Q Consensus 285 ~Gi~eRli~~Lie~~~d~~G~~lP~~laP~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~~lg~k~~ 364 (511)
+|.+||++++|+++++ +.||+|++|.||+|+|++ ++..++|.+|++.||++||+|++|+++ .++|+||+
T Consensus 452 ~G~~eRl~~~l~e~~~----~~~p~~~~p~~v~Ii~~~------~~~~~~a~~i~~~Lr~~gi~v~~d~~~-~~l~kk~~ 520 (575)
T PRK12305 452 FGSIERFIGILTEHYA----GAFPFWLAPVQVVIIPVA------DAHNEYAEEVAKKLRAAGIRVEVDTSN-ERLNKKIR 520 (575)
T ss_pred cccHHHHHHHHHHHhC----CCCCCCCCCccEEEEEeC------hHHHHHHHHHHHHHHHCCCEEEEECCC-CCHHHHHH
Confidence 9988999999999763 589999999999999997 467899999999999999999999998 59999999
Q ss_pred cccccCceeEeeeCcccccCCcEEEEEccCCCccccccchHHHHHHHHHHH
Q 010413 365 HWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLDE 415 (511)
Q Consensus 365 ~ae~~giP~~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~el~~~i~~~l~~ 415 (511)
+|++.|+||+|+||++|+++|+|+||+|+++++..|+++++++.|.+.+++
T Consensus 521 ~A~~~g~p~~iivG~~E~~~~~v~vr~~~~~~q~~v~~~~l~~~l~~~~~~ 571 (575)
T PRK12305 521 NAQKQKIPYMLVVGDKEVEAGTVSVRTRDGEQLNGMPLDEFIELIKEKIAE 571 (575)
T ss_pred HHHhcCCCEEEEEechhhhCCEEEEEEcCCCceeeeeHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999998888777664
No 15
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=100.00 E-value=1.9e-64 Score=553.80 Aligned_cols=375 Identities=18% Similarity=0.295 Sum_probs=328.7
Q ss_pred CCccccccceeecceecccCChhhhHHHhh-----------hccceeeeee--eceeEEeccchHHHHHHHHHHHHHHHH
Q 010413 17 GKKKEVKKETGLGLSYKKDENFGEWYSEVV-----------VNGEMIEYYD--ISGCYIIRPWAMSIWETMQKFFDAEIK 83 (511)
Q Consensus 17 ~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~-----------~~a~~~d~~~--~~G~~~~~P~g~~i~~~I~~~~~~~~~ 83 (511)
++++|+|++|++|++||+.+.+.+|...+- ++.+++|+.+ ++|+++|+|.|+.+|+.|++++++.+.
T Consensus 136 ~~~~~~~l~Ri~g~~~~~~~~l~~~~~~~~~~~~~dH~~l~~~~~l~~~~~~~~~G~~~~~p~g~~~~~~i~~~~~~~~~ 215 (563)
T TIGR00418 136 GDSKNKMLQRIYGTAWADKKQLAAYLLRLEEAKKRDHRKLGKELELFSFEPEIGPGLPFWLPKGATIRNLLEDFVRQKQI 215 (563)
T ss_pred EcCCCCceEeeeeccCCCHHHHHHHHHhhhhhhcCCHHHHHHhCCCcccCcccCCcceEEeccHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999987632 2334666653 899999999999999999999999999
Q ss_pred hcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhhhhhcCCCCccccccccc
Q 010413 84 KMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCN 163 (511)
Q Consensus 84 ~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~ 163 (511)
++||++|.||+|++.++|.+ +||++.|.++||+|+|.+ ++.++||||+|++++++|+++..||++||+|+||+|+
T Consensus 216 ~~G~~ev~tP~l~~~~l~~~-sg~~~~~~~emy~~~d~~----~~~~~LrP~~~~~i~~~~~~~~~s~~~lP~rl~~~g~ 290 (563)
T TIGR00418 216 KYGYMEVETPIMYDLELWEI-SGHWDNYKERMFPFTELD----NREFMLKPMNCPGHFLIFKSSLRSYRDLPLRIAELGY 290 (563)
T ss_pred HcCCEEEECCccCCHHHHHh-cCCcccchhhcceeccCC----CceEEEecCCCHHHHHHHhCcCCChHHCCceeeEecc
Confidence 99999999999999999964 799999999999999977 4899999999999999999999999999999999999
Q ss_pred eEeeeecC-CCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhhhcccc---ccccc-c--------ccc--
Q 010413 164 VVRWEFSN-PTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPV---IKGKK-S--------ELE-- 228 (511)
Q Consensus 164 vfR~E~~~-~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~lg~ip~---~~g~~-~--------~~e-- 228 (511)
|||||.++ ++||+|+|||+|.|+|+ ++.++++++|+..+++++.++|+.|| +|. .+... + .++
T Consensus 291 ~fR~E~~g~~~Gl~R~reF~q~~~~~-~~~~~~~~~e~~~~i~~~~~~~~~lg-l~~~~~~l~~~~~~~~~~~~~~~~~~ 368 (563)
T TIGR00418 291 SHRYEQSGELHGLMRVRGFTQDDAHI-FCTEDQIKEEFKNQFRLIQKVYSDFG-FSFDKYELSTRDPEDFIGEDELWEKA 368 (563)
T ss_pred ccCCCCCcCCcCcccccceEEeeeEE-EcCHHHHHHHHHHHHHHHHHHHHHcC-CCeEEEEEeCCChhhhcCCHHHHHHH
Confidence 99999887 46999999999999999 54589999999999999999999998 663 22211 0 011
Q ss_pred ------------------cccCccceeeEEEee-cCCCcccccccccccccccccceeeEEeCCCCceeeee---ee-cc
Q 010413 229 ------------------KFAGGLYTTTVEAFI-PNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAW---QN-SW 285 (511)
Q Consensus 229 ------------------k~~ga~y~~~ie~~~-p~~gr~lq~gt~~~lg~~~s~~f~i~y~~~~g~~~~v~---~~-~~ 285 (511)
.+.|++|++++++.+ +.+|+.+|+||+| ++..++.+||++|.+++|.+..++ .+ +.
T Consensus 369 ~~~~~~~l~~~~i~~~~~~~~g~~y~~~~~f~~~~~lg~~~~~~t~q-~~~~~g~ryd~~~~~~~g~~~~p~ii~~Gfa~ 447 (563)
T TIGR00418 369 EAALEEALKELGVPYEIDPGRGAFYGPKIDFAFKDALGREWQCATVQ-LDFELPERFDLTYVDEDNEEKRPVMIHRAILG 447 (563)
T ss_pred HHHHHHHHHhCCCceEEcCCCcceecceEEEEeecCCCCceeeceee-eccCCHhhcCCEEECCCCCEEeeEEEEeeccC
Confidence 134688999888876 5679999999999 999999999999999887665333 33 33
Q ss_pred ccccceeeEEEEEeeCCCCcccCCcccceeEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeeecCCCCCCCCCCCCc
Q 010413 286 AYTTRTIGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSH 365 (511)
Q Consensus 286 Gi~eRli~~Lie~~~d~~G~~lP~~laP~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~~lg~k~~~ 365 (511)
| +||++++|++++ |..||+|++|.||+|||++ ++..++|.+|++.||++|++|++|+++ +++|+|+++
T Consensus 448 g-ieRli~~l~e~~----~~~~p~~~~p~~v~vi~~~------~~~~~~a~~ia~~LR~~Gi~v~~d~~~-~sl~~q~k~ 515 (563)
T TIGR00418 448 S-IERFIAILLEKY----AGNFPLWLAPVQVVVIPVN------ERHLDYAKKVAQKLKKAGIRVDVDDRN-ERLGKKIRE 515 (563)
T ss_pred c-HHHHHHHHHHhc----cCCCCCcCCCceEEEEEcc------chHHHHHHHHHHHHHHcCCEEEEECCC-CCHHHHHHH
Confidence 4 799999998876 4678999999999999998 356789999999999999999999988 699999999
Q ss_pred ccccCceeEeeeCcccccCCcEEEEEccCCCccccccchHHHHHHH
Q 010413 366 WEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKE 411 (511)
Q Consensus 366 ae~~giP~~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~el~~~i~~ 411 (511)
|++.|+|++|+||++|+++|+|+||+|++++|..|+++++++.+++
T Consensus 516 A~~~g~~~~iiiG~~E~~~~~v~vk~~~~g~q~~v~~~el~~~i~~ 561 (563)
T TIGR00418 516 AQKQKIPYMLVVGDKEMESLAVNVRTRKGQKLEKMSLDEFLEKLRK 561 (563)
T ss_pred HHhcCCCEEEEEchhhhhCCeEEEEECCCCccceeeHHHHHHHHHh
Confidence 9999999999999999999999999999999999999998776643
No 16
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=7.9e-61 Score=532.62 Aligned_cols=382 Identities=21% Similarity=0.354 Sum_probs=332.6
Q ss_pred CCCccccccceeecceecccCChhhhHHHhhhccc------------eeeee-eeceeEEeccchHHHHHHHHHHHHHHH
Q 010413 16 GGKKKEVKKETGLGLSYKKDENFGEWYSEVVVNGE------------MIEYY-DISGCYIIRPWAMSIWETMQKFFDAEI 82 (511)
Q Consensus 16 ~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~a~------------~~d~~-~~~G~~~~~P~g~~i~~~I~~~~~~~~ 82 (511)
-||+++.+++|++|++|++.+++.+|.+.+ +++. ++++. .++|+++|+|.|+.+|+.|++++++.+
T Consensus 206 l~~~~~~~l~Ri~g~~~~~~~~l~~~~~~~-~e~~~~~h~~l~~~~~~~~~~~~~~G~~~~lp~~~~~~~~i~~~~~~~~ 284 (638)
T PRK00413 206 RGDSKNKMLQRIYGTAFADKKELDAYLHRL-EEAKKRDHRKLGKELDLFHFQEEAPGLPFWHPKGWTIRRELERYIRRKL 284 (638)
T ss_pred cCCCcchheEEEEeeecCCHHHHHHHHHHH-HHhccccHHHHHHhcCEEEecCCCCcceEEcccHHHHHHHHHHHHHHHH
Confidence 379999999999999999999999999884 4443 33332 469999999999999999999999999
Q ss_pred HhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhhhhhcCCCCcccccccc
Q 010413 83 KKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWC 162 (511)
Q Consensus 83 ~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g 162 (511)
.++||++|.||+|++.++|.+ +||++.|.++||.|.|.+ ++.++||||+|++++++|+++.+||++||+|++|+|
T Consensus 285 ~~~Gy~ei~tP~le~~~l~~~-~g~~~~~~~~my~~~d~~----~~~~~LRP~~~~~~~r~~~~~~~s~~~lP~r~~~~g 359 (638)
T PRK00413 285 RKAGYQEVKTPQILDRELWET-SGHWDHYRENMFPTTESD----GEEYALKPMNCPGHVQIYKQGLRSYRDLPLRLAEFG 359 (638)
T ss_pred HHCCCEEEECCeeCCHHHHHh-cCChhhhhhccceeecCC----CcEEEEecCCcHHHHHHHhCcCCChhhCCceeeecc
Confidence 999999999999999999965 799999999999999887 589999999999999999999999999999999999
Q ss_pred ceEeeeecCC-CCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhhhcccccccccc----------ccc---
Q 010413 163 NVVRWEFSNP-TPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKS----------ELE--- 228 (511)
Q Consensus 163 ~vfR~E~~~~-~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~lg~ip~~~g~~~----------~~e--- 228 (511)
+|||+|.++. .||.|+|||+|+|+|+ +++++++.+|+.+++.++.++|+.||+-++.+...+ .++
T Consensus 360 ~~fR~E~~~~~~Gl~R~reF~q~~~~~-~g~~~~~~~e~~eii~l~~~~~~~lg~~~~~i~l~~r~~~~~g~~~~~~~~~ 438 (638)
T PRK00413 360 TVHRYEPSGALHGLMRVRGFTQDDAHI-FCTPEQIEEEVKKVIDLILDVYKDFGFEDYEVKLSTRPEKRIGSDEMWDKAE 438 (638)
T ss_pred CeecCCCCCCCcCcceeeeeEEeeEEE-EcCHHHHHHHHHHHHHHHHHHHHHcCCceEEEEEecCCcccCCCHHHHHHHH
Confidence 9999996532 5999999999999998 778888888888899999999999984244321111 011
Q ss_pred -----------------cccCccceeeEEEee-cCCCcccccccccccccccccceeeEEeCCCCcee---eeeeecccc
Q 010413 229 -----------------KFAGGLYTTTVEAFI-PNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKA---MAWQNSWAY 287 (511)
Q Consensus 229 -----------------k~~ga~y~~~ie~~~-p~~gr~lq~gt~~~lg~~~s~~f~i~y~~~~g~~~---~v~~~~~Gi 287 (511)
...+++|+++++..+ +.+++.++++|++ ++..++++||++|.+.+|... .+|++.+|.
T Consensus 439 ~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~~~~~~dl~Yt~~~~~~~~p~~i~~~~~g~ 517 (638)
T PRK00413 439 AALKEALDELGLDYEIAPGEGAFYGPKIDFQLKDALGREWQCGTIQ-LDFNLPERFDLTYVGEDGEKHRPVMIHRAILGS 517 (638)
T ss_pred HHHHHHHHHcCCCceecCCccccccceEEEEeecCCCCeEEeccEe-ecccChhhcCCEEECCCCCccCcEEEEecceeh
Confidence 123456788888755 6789999999999 999999999999999877543 567887887
Q ss_pred ccceeeEEEEEeeCCCCcccCCcccceeEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeeecCCCCCCCCCCCCccc
Q 010413 288 TTRTIGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWE 367 (511)
Q Consensus 288 ~eRli~~Lie~~~d~~G~~lP~~laP~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~~lg~k~~~ae 367 (511)
+||+|++|+++++ +.||+|++|.||+|+|++ ++..++|.+|++.||++|++|++|+++ .++|+|+++|+
T Consensus 518 ~eRli~~l~e~~~----~~~p~~~~p~~v~Ii~~~------~~~~~~a~~i~~~Lr~~gi~v~~d~~~-~~l~kki~~A~ 586 (638)
T PRK00413 518 MERFIGILIEHYA----GAFPTWLAPVQVVVLPIT------DKHADYAKEVAKKLKAAGIRVEVDLRN-EKIGYKIREAQ 586 (638)
T ss_pred HHHHHHHHHHHcC----CCCCcccCcceEEEEEeC------hhHHHHHHHHHHHHHhCCCEEEEECCC-CCHhHHHHHhh
Confidence 8999999988763 479999999999999998 456789999999999999999999998 69999999999
Q ss_pred ccCceeEeeeCcccccCCcEEEEEccCCCccccccchHHHHHHHHHHHH
Q 010413 368 MKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLDEI 416 (511)
Q Consensus 368 ~~giP~~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~el~~~i~~~l~~~ 416 (511)
+.|+|++|+||++|+++|+|+||+|++++|..|+++++++.|.+++++.
T Consensus 587 ~~g~~~~iiiG~~E~~~~~v~vr~~~~~~q~~i~~~~l~~~i~~~~~~~ 635 (638)
T PRK00413 587 LQKVPYMLVVGDKEVEAGTVSVRRRGGKDLGTMSLDEFIERLLEEIASR 635 (638)
T ss_pred ccCCCEEEEEcchhhhcCeEEEEECCCCccceeeHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999998888777653
No 17
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-60 Score=481.18 Aligned_cols=363 Identities=21% Similarity=0.328 Sum_probs=323.6
Q ss_pred cceecccCChhhhHHHhhhccceee---------ee----eeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecc
Q 010413 29 GLSYKKDENFGEWYSEVVVNGEMIE---------YY----DISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLF 95 (511)
Q Consensus 29 g~~~~~~~~~~~~~~~~~~~a~~~d---------~~----~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l 95 (511)
|-.||+.+.+++|... .++|.+-| ++ ..||..+|+|.|++|++.|.+++|..+++.||+||.||.+
T Consensus 141 ~~sfp~~k~~k~~~~~-~~Ea~~rdHRkig~~qeLfff~~lSPGS~FflP~G~~iyN~Lv~fir~ey~~rGf~EVitPni 219 (560)
T KOG1637|consen 141 GDSFPDPKQLKEWEKF-QEEAKKRDHRKIGKEQELFFFHELSPGSCFFLPHGTRIYNTLVDFIRAEYRKRGFTEVITPNI 219 (560)
T ss_pred cccCCCHHHHHHHHhh-chhhhhhhhhhhhhhhhheeeccCCCcceeeccCcchHHHHHHHHHHHHHHhcCCceecCcch
Confidence 3378888899999876 56675443 33 4899999999999999999999999999999999999999
Q ss_pred cChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhhhhhcCCCCccccccccceEeeeecCCC-C
Q 010413 96 VSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPT-P 174 (511)
Q Consensus 96 ~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~-G 174 (511)
.+..||+ .||||++|.++||.|.-. .++++|+||+||+|+.+|++.-+|||+||+|+..+|.++|+|.++++ |
T Consensus 220 y~~~LWe-~SGHwqnY~enmF~~e~e-----ke~~~LKPMNCPgHcLmf~~r~rS~reLPlR~aDFg~LHRnE~SGaLsG 293 (560)
T KOG1637|consen 220 YNKKLWE-TSGHWQNYSENMFKFEVE-----KEEFALKPMNCPGHCLMFAHRDRSYRELPLRFADFGVLHRNEASGALSG 293 (560)
T ss_pred hhhhhhh-hccchhhhhhhceeeeec-----hhhhccCccCCCccccccccCCccHhhCCccccCcceeeeccccccccc
Confidence 9999996 799999999999999863 37899999999999999999999999999999999999999999988 9
Q ss_pred cccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhhhccccccccccccc--------------------------
Q 010413 175 FIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELE-------------------------- 228 (511)
Q Consensus 175 l~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~lg~ip~~~g~~~~~e-------------------------- 228 (511)
|+|+|.|+|+|+|| ||+++|..+|+..+++++..+|.-+| ..+.+.++|+++
T Consensus 294 LTRvRrFqQDDaHI-FCt~~Qi~~Eik~~l~fl~~vY~~fg-f~f~l~lSTRPe~~lG~l~~Wd~AE~~L~~al~e~g~p 371 (560)
T KOG1637|consen 294 LTRVRRFQQDDAHI-FCTPDQVKEEIKGCLDFLDYVYGVFG-FTFKLNLSTRPEKFLGDLETWDEAEFKLEEALNESGEP 371 (560)
T ss_pred cceeeeecccCceE-EecCccHHHHHHHHHHHHHHHHHhcc-ccceeEeccChHHhccCHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999998 99999999999999999999999777 444444444332
Q ss_pred ----cccCccceeeEEEee-cCCCcccccccccccccccccceeeEEeCCCCcee---eeeeeccccccceeeEEEEEee
Q 010413 229 ----KFAGGLYTTTVEAFI-PNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKA---MAWQNSWAYTTRTIGVMVMVHG 300 (511)
Q Consensus 229 ----k~~ga~y~~~ie~~~-p~~gr~lq~gt~~~lg~~~s~~f~i~y~~~~g~~~---~v~~~~~Gi~eRli~~Lie~~~ 300 (511)
.+.||+|+|+||..+ +.++|..||+|++ ||++++.+|++.|.+.+|..+ +||++.+|+++|++++|+|++
T Consensus 372 w~lN~GDGAFYGPKIDi~l~Dal~r~hQcaTIQ-LDFqLP~rFdL~y~~~~g~~erPVmIHRAIlGSvERmiaiL~E~~- 449 (560)
T KOG1637|consen 372 WVLNPGDGAFYGPKIDITLDDALGRKHQCATIQ-LDFQLPIRFDLEYETEDGDLERPVMIHRAILGSVERMIAILLESY- 449 (560)
T ss_pred ceecCCCcccccceeeeEhhhhcCcccceeeee-ecccChhhcCceeecccccccchhhHHHHHhhhHHHHHHHHHHHh-
Confidence 245899999999987 7789999999999 999999999999999887643 789999999999999999987
Q ss_pred CCCCcccCCcccceeEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeeecCCCCCCCCCCCCcccccCceeEeeeCcc
Q 010413 301 DDKGLVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPK 380 (511)
Q Consensus 301 d~~G~~lP~~laP~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~~lg~k~~~ae~~giP~~iivG~~ 380 (511)
|+.||.|++|.|++|||++ +....||.+|...|..+|+-+++|..+ .+++++++.|...+..++++||++
T Consensus 450 ---~gkwPFWlSPRq~~vIpVs------e~~~~ya~~V~~ql~~a~f~~Dld~t~-~tl~kkir~Aqla~yn~i~VVGdk 519 (560)
T KOG1637|consen 450 ---GGKWPFWLSPRQAVVIPVS------EGPLDYATSVQKQLEEAGFYVDLDPTD-STLRKKIRNAQLAHYNFIFVVGDK 519 (560)
T ss_pred ---CCCCCeeeccceEEEEECC------CcchhHHHHHHHHHHhhhceeecCCcc-chHHHHHhhhhhcceeEEEEEchh
Confidence 5899999999999999999 456789999999999999999999988 699999999999999999999999
Q ss_pred cccCCcEEEEEccCCC---ccccccchHHHHHHHH
Q 010413 381 DLAKNQVRAVRRDNGA---KVDLPRSSLVERIKEL 412 (511)
Q Consensus 381 E~e~~~Vtvr~r~~~e---k~~v~~~el~~~i~~~ 412 (511)
|++.++|+|+.|++.. +..++++++.+.+.++
T Consensus 520 E~~~~~vnVr~Rd~~~~~~~~~~tie~~~~~~~~l 554 (560)
T KOG1637|consen 520 EVETGRVNVRTRDNRDNKTESEMTIEELSDEFKEL 554 (560)
T ss_pred hhhcCceeeeccccccccccceeeHHHHHHHHHHh
Confidence 9999999999996543 4467777776665544
No 18
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=100.00 E-value=9.7e-58 Score=453.89 Aligned_cols=259 Identities=56% Similarity=1.073 Sum_probs=247.7
Q ss_pred ChhhhHHHhhhccceeeeeeeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCccee
Q 010413 37 NFGEWYSEVVVNGEMIEYYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVA 116 (511)
Q Consensus 37 ~~~~~~~~~~~~a~~~d~~~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy 116 (511)
||++||.+|+++++++|+.+++|+++|+|.|++++++|++++++.+.+.||++|.||+|++.++|.+++||+++|.++||
T Consensus 1 ~~~~w~~~l~~~~~~~d~~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f 80 (261)
T cd00778 1 DFSEWYTEVITKAELIDYGPVKGCMVFRPYGYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVA 80 (261)
T ss_pred CHHHHHHHHHHHhCCcccCCCCCeEEEcccHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhcCcceE
Confidence 68999999999999999988999999999999999999999999999999999999999999999667999999999999
Q ss_pred eEeccCCCCCCCceeecCCCccccchhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhh
Q 010413 117 WVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEA 196 (511)
Q Consensus 117 ~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a 196 (511)
.+++.+++.++++++||||+|++++.++++++.||++||+|++|+++|||+|.++++||+|+|||+|+|+|++||+++++
T Consensus 81 ~~~~~~~~~~~~~~~L~Pt~e~~~~~~~~~~i~s~r~LPlr~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~~~~e~~ 160 (261)
T cd00778 81 WVTHGGLEELEEPLALRPTSETAIYPMFSKWIRSYRDLPLKINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHATEEEA 160 (261)
T ss_pred EEEecCCcccCCcEEEcCCCCHHHHHHHHhhccchhhcCHHHHhhhhhccCCCCCCCceeEeeeeeeeceeeccCCHHHH
Confidence 99987754445789999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhh-hccccccccccccccccCccceeeEEEeecCCCcccccccccccccccccceeeEEeCCCC
Q 010413 197 DDEVLQILELYRRIYEEF-LAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKG 275 (511)
Q Consensus 197 ~~e~~~~l~~~~~i~~~l-g~ip~~~g~~~~~ek~~ga~y~~~ie~~~p~~gr~lq~gt~~~lg~~~s~~f~i~y~~~~g 275 (511)
++++..++++|.+||+.| | +|++++.++.+|++.|+.+++++|+++| .||.+|+||+++||+++|++|+++|.+++|
T Consensus 161 ~~~~~~~~~~~~~i~~~llg-l~~~~~~~~~~d~~~~a~~~~~ie~~~p-~~~~~ev~s~~~l~~~~s~r~~i~y~~~~g 238 (261)
T cd00778 161 EEEVLQILDLYKEFYEDLLA-IPVVKGRKTEWEKFAGADYTYTIEAMMP-DGRALQSGTSHNLGQNFSKAFDIKYQDKDG 238 (261)
T ss_pred HHHHHHHHHHHHHHHHHhCC-CeEEEecCCccccCCCCccceEEEEEee-CCCEEEEEeccccccccchhcCCEEECCCC
Confidence 999999999999999999 7 8999999988999999999999999999 799999999999999999999999999999
Q ss_pred ceeeeeeeccccccceeeEEEE
Q 010413 276 EKAMAWQNSWAYTTRTIGVMVM 297 (511)
Q Consensus 276 ~~~~v~~~~~Gi~eRli~~Lie 297 (511)
+.+++|++++|+++|+|++|++
T Consensus 239 ~~~~~h~~~~g~~~R~i~ali~ 260 (261)
T cd00778 239 QKEYVHQTSWGISTRLIGAIIM 260 (261)
T ss_pred CCcCcEEecccHHHHHHHHHHh
Confidence 9889999999999999998865
No 19
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=100.00 E-value=4.5e-56 Score=442.01 Aligned_cols=259 Identities=30% Similarity=0.494 Sum_probs=245.5
Q ss_pred ChhhhHHHhhhccceeeeeeeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccC-CCcce
Q 010413 37 NFGEWYSEVVVNGEMIEYYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG-FAPEV 115 (511)
Q Consensus 37 ~~~~~~~~~~~~a~~~d~~~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~-f~~em 115 (511)
||+.||++|+.+|+++++.+++|+++|+|.|+++|++|++++++.++++||++|.||+|++.++|. .+|+++. |.++|
T Consensus 1 ~~~~~~~~~l~~ag~~~~~~~~G~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~-~~g~~~~~~~~e~ 79 (264)
T cd00772 1 DASEKSLEHIGKAELADQGPGRGIINFLPLAKAILDKIENVLDKMFKEHGAQNALFPFFILASFLE-KEAEHDEGFSKEL 79 (264)
T ss_pred ChhHHHHHHHHhcCCccccCCCCEEEECCcHHHHHHHHHHHHHHHHHHcCCeEEECCeeccHHHHh-hcCCcccccCccc
Confidence 688999999999999999889999999999999999999999999999999999999999999994 6888876 55899
Q ss_pred eeEeccCCCCCCCceeecCCCccccchhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhh
Q 010413 116 AWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSE 195 (511)
Q Consensus 116 y~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~ 195 (511)
|++++.++++++++++||||+|++++.++++++.||++||+|+|||++|||+|++|++||+|+|||+|+|+|++|+++++
T Consensus 80 ~~~~~~~~~~~~~~l~LrPt~e~~~~~~~~~~i~s~~~LPlrl~~~~~~fR~E~r~~~Gl~R~reF~~~e~~~~~~~~e~ 159 (264)
T cd00772 80 AVFKDAGDEELEEDFALRPTLEENIGEIAAKFIKSWKDLPQHLNQIGNKFRDEIRPRFGFLRAREFIMKDGHSAHADAEE 159 (264)
T ss_pred eEEEeCCCCccCceEEECCCCCHHHHHHHHhhhhhhhccCeeEEEEeCeEeCcCCCCCCcceeeEEEEeeeEEecCCHHH
Confidence 99998876556689999999999999999999999999999999999999999988899999999999999999899999
Q ss_pred hHHHHHHHHHHHHHHHhhhhccccccccccccccccCccceeeEEEeecCCCccccccccccccccccccee--eEEeCC
Q 010413 196 ADDEVLQILELYRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFE--IIFENE 273 (511)
Q Consensus 196 a~~e~~~~l~~~~~i~~~lg~ip~~~g~~~~~ek~~ga~y~~~ie~~~p~~gr~lq~gt~~~lg~~~s~~f~--i~y~~~ 273 (511)
+++|+..++++|.+||++||++||+++.++.+|+|.|+.+++++|+|||. |+..+++++|+++++++++++ ++|.|+
T Consensus 160 a~~e~~~~~~~~~~i~~~l~~lp~~~~~~~~~d~~~g~~~~~d~e~~~p~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 238 (264)
T cd00772 160 ADEEFLNMLSAYAEIARDLAAIDFIEGEADEGAKFAGASKSREFEALMED-GKAKQAETGHIFGEGFARAFDLKAKFLDK 238 (264)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccEEEEEcCCCccccCCcCCEEEEEECCC-CCEeEEEeeeeccCCchhhcCCccEEECC
Confidence 99999999999999999999899999999999999999999999999995 899999999999999999766 999999
Q ss_pred CCceeeeeeecccc-ccceeeEEEE
Q 010413 274 KGEKAMAWQNSWAY-TTRTIGVMVM 297 (511)
Q Consensus 274 ~g~~~~v~~~~~Gi-~eRli~~Lie 297 (511)
+|+.+++|++|||+ ++|+|+|++|
T Consensus 239 ~~~~~~~~~n~~gi~~~R~l~aile 263 (264)
T cd00772 239 DGKEKFFEMGCWGIGISRFIGAIIE 263 (264)
T ss_pred CCCEEEEEeccccchHHHHHHHhhc
Confidence 99999999999999 7799999987
No 20
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=100.00 E-value=6.5e-56 Score=470.97 Aligned_cols=344 Identities=19% Similarity=0.230 Sum_probs=278.8
Q ss_pred eeceeEEeccchHHHHHHHHHHHHHHHHh--cceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCC----------
Q 010413 56 DISGCYIIRPWAMSIWETMQKFFDAEIKK--MKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGE---------- 123 (511)
Q Consensus 56 ~~~G~~~~~P~g~~i~~~I~~~~~~~~~~--~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~---------- 123 (511)
.++|+|||+|.|+.|+++|+++|++.+.+ .||.+|.||++.+.+|| +.||||+.|.+.||.++..+.
T Consensus 26 ~~~g~~d~~P~G~~l~~~i~~~~r~~~~~~~~~~~ev~tp~i~~~~l~-~~SGH~~~f~d~m~~~~~~~~~~r~d~~~~~ 104 (456)
T PRK04173 26 GLAGFWDYGPLGVELKNNIKRAWWKSFVQEREDVVGIDSPIIMPPEVW-EASGHVDNFSDPLVECKKCKKRYRADHLIEE 104 (456)
T ss_pred chhcccccChhhHHHHHHHHHHHHHHHHhccCCEEEEeccccCCHHHH-hhcCCccccCCceeEeCCCCCEeechhhhHH
Confidence 58999999999999999999999999987 89999999999999999 579999999999998852210
Q ss_pred -----------------------------C--------------------CCCCceeecCCCccccchhhhhhhhcCC-C
Q 010413 124 -----------------------------S--------------------DLEVPIAIRPTSETVMYPYYSKWIRGHR-D 153 (511)
Q Consensus 124 -----------------------------~--------------------~l~~~l~LRPt~e~~~~~~~~~~~~s~r-~ 153 (511)
. ..+..++|||+++++++..|+++++||| +
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~m~cp~~~~~~~~~~~~f~l~f~~~~g~~~~~~~~~~lRpetaqg~~~~f~~~~~syr~d 184 (456)
T PRK04173 105 LGIDAEGLSNEELKELIRENDIKCPECGGENWTEVRQFNLMFKTFIGPVEDSKSLGYLRPETAQGIFVNFKNVLRTARKK 184 (456)
T ss_pred HhhhhccccHHHHHHHHHHhCCCCCCCCCCCCcCccchhhceeecccCccCCCcceeeccccchhHHHHHHHHHHhcccc
Confidence 0 0023466777777777777999999999 9
Q ss_pred CccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhhhccc-c--ccccccccccc
Q 010413 154 LPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVP-V--IKGKKSELEKF 230 (511)
Q Consensus 154 LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~lg~ip-~--~~g~~~~~ek~ 230 (511)
||++++|||+|||||.+|..||+|+|||+|+|+|+ ||+++|+.+|+..+++++..+|..+| ++ + .+..+...+++
T Consensus 185 LPlr~aq~g~~~RnE~s~~~gL~RvReF~q~e~hi-F~~peq~~~e~~~~l~~~~~~l~~lG-~~~~~~~~s~~~~~e~~ 262 (456)
T PRK04173 185 LPFGIAQIGKSFRNEITPRNFIFRTREFEQMELEF-FVKPGTDNEWFAYWIELRKNWLLDLG-IDPENLRFREHLPEELA 262 (456)
T ss_pred CCeeeeEEchhHhCccCCCCCceeeceeeeeEEEE-EECcChHHHHHHHHHHHHHHHHHHcC-CCccceEEEecCcchhh
Confidence 99999999999999999866999999999999996 99999999999999999999999998 55 3 33333333455
Q ss_pred cCccceeeEEEeecCCCcccc------ccccccccc--ccccceeeEEe--CCCCcee--eeeeeccccccceeeEEE-E
Q 010413 231 AGGLYTTTVEAFIPNTGRGIQ------GATSHCLGQ--NFSKMFEIIFE--NEKGEKA--MAWQNSWAYTTRTIGVMV-M 297 (511)
Q Consensus 231 ~ga~y~~~ie~~~p~~gr~lq------~gt~~~lg~--~~s~~f~i~y~--~~~g~~~--~v~~~~~Gi~eRli~~Li-e 297 (511)
.++....++++.+| .|+.|+ .++.|+|.. .+ .+|+++|. +.+|++. ++...++| ++|++.+++ +
T Consensus 263 ~ys~~~wd~e~~~~-~g~~~~e~~g~~~~~dydL~~~~~~-s~~dl~y~~~~~~~~~~~P~vi~~siG-ieRl~~ail~~ 339 (456)
T PRK04173 263 HYSKATWDIEYKFP-FGRFWGELEGIANRTDYDLSRHSKH-SGEDLSYFDDETTGEKYIPYVIEPSAG-LDRLLLAFLED 339 (456)
T ss_pred ccHHHHHhHHHhCC-CCCcEEEEeeeeccchhhcccchhh-cCCCeEEEecCCCCceeeeEEEEeccc-HHHHHHHHHHH
Confidence 56655566666665 366553 345555544 22 36899998 4456544 33344688 699655554 4
Q ss_pred EeeCC--------CCcccCCcccceeEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeeecCCCCCCCCCCCCccccc
Q 010413 298 VHGDD--------KGLVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMK 369 (511)
Q Consensus 298 ~~~d~--------~G~~lP~~laP~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~~lg~k~~~ae~~ 369 (511)
+|.++ .|+.||+|+||+||+|+|++.+ ++..++|.+|++.||++ ++|++|++ .++|+|+++|++.
T Consensus 340 ~~~~~~~~~~~~r~~l~~P~~lAP~qV~Iipi~~~----~e~~~~A~~la~~LR~~-irVelD~~--~slgkkir~A~~~ 412 (456)
T PRK04173 340 AYTEEELGGGDKRTVLRLPPALAPVKVAVLPLVKK----EKLSEKAREIYAELRKD-FNVDYDDS--GSIGKRYRRQDEI 412 (456)
T ss_pred HcccccccCCcceeEEECCCcCCCCEEEEEEecCc----HHHHHHHHHHHHHHHhc-CEEEEeCC--CCHHHHHHHHHHc
Confidence 44321 2468999999999999999842 24779999999999999 99999975 4999999999999
Q ss_pred CceeEeeeCcccccCCcEEEEEccCCCccccccchHHHHHHHH
Q 010413 370 GVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKEL 412 (511)
Q Consensus 370 giP~~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~el~~~i~~~ 412 (511)
|+|++|+||++|+++++|+||+|+++++..++++++++.+.++
T Consensus 413 Gip~~IIIG~~El~~g~VtvR~r~t~eq~~v~l~el~~~l~~~ 455 (456)
T PRK04173 413 GTPFCITVDFDTLEDNTVTIRDRDTMEQVRVKIDELKDYLAEK 455 (456)
T ss_pred CCCEEEEECCchhhCCEEEEEECCCCceEEEeHHHHHHHHHhh
Confidence 9999999999999999999999999999999999988777543
No 21
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=100.00 E-value=1.2e-54 Score=415.27 Aligned_cols=202 Identities=52% Similarity=0.969 Sum_probs=188.4
Q ss_pred CcccCCcccceeEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeeecCCCCCCCCCCCCcccccCceeEeeeCccccc
Q 010413 304 GLVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLA 383 (511)
Q Consensus 304 G~~lP~~laP~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~~lg~k~~~ae~~giP~~iivG~~E~e 383 (511)
|++||||+||+||+|||++.++.+.+.+.++|.+|++.|+++||||++|+++..++|+||++|+++|+|++|+||++|++
T Consensus 1 GLvlP~~iAP~qVvIipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~r~~~s~g~K~~~ae~~GvP~~I~IG~~Ele 80 (202)
T cd00862 1 GLVLPPRVAPIQVVIVPIGIKDEKREEVLEAADELAERLKAAGIRVHVDDRDNYTPGWKFNDWELKGVPLRIEIGPRDLE 80 (202)
T ss_pred CCcCChhhcCceEEEEEecCCccchHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHhHHHHHHHhCCCCEEEEECcchhh
Confidence 78999999999999999985422235588999999999999999999999884499999999999999999999999999
Q ss_pred CCcEEEEEccCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcceeccChhHHHHHhcCCceEEecCCCchhhhH
Q 010413 384 KNQVRAVRRDNGAKVDLPRSSLVERIKELLDEIQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEK 463 (511)
Q Consensus 384 ~~~Vtvr~r~~~ek~~v~~~el~~~i~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~wc~~~~ce~ 463 (511)
+|+|+|++|+++++..++++++++.+.++|++||++||+||++++++ |+.++|||||+++|++||||++||||+.+||+
T Consensus 81 ~g~V~v~~Rd~~ek~~v~~~el~~~i~~ll~~i~~~l~~~A~~~~~~-~~~~~~~~e~~~~~~~~~~v~~~wcg~~~~e~ 159 (202)
T cd00862 81 KNTVVIVRRDTGEKKTVPLAELVEKVPELLDEIQEDLYERALEFRDA-TRIVDTWEEFKEALNEKGIVLAPWCGEEECEE 159 (202)
T ss_pred CCEEEEEEecCCcceEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-eEeeCCHHHHHHHHhcCCEEEEEecCCHHHHH
Confidence 99999999999999999999999999999999999999999999999 99999999999999989999999999999999
Q ss_pred HHHhhccccccccccccccCCCCCCCCCCcccccCCCcceEEeeeccC
Q 010413 464 DVKARTKGEMGAAKTLCSPLEQPEIPEGTLCFASGKPAKRWSYWGRSY 511 (511)
Q Consensus 464 ~ik~~~~~~~~~~~~~cip~~~~~~~~~~~C~~~g~~a~~~~~~~rsY 511 (511)
+||++| +||+||||++++.+..+.+|++||+||++|++|||||
T Consensus 160 ~ik~~~-----~a~~~~ip~~~~~~~~~~~C~~~g~~a~~~~~~arsY 202 (202)
T cd00862 160 EIKEET-----AATILCIPFDEAKLEEGGKCVVCGRPAKAYARFAKSY 202 (202)
T ss_pred HHHHhh-----CCeEeeeecCCcCCCCCCccCCcCCchheEEEEEEeC
Confidence 999999 9999999998752223457999999999999999999
No 22
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=100.00 E-value=1.9e-52 Score=414.60 Aligned_cols=247 Identities=19% Similarity=0.316 Sum_probs=227.9
Q ss_pred HHhhhccceeeeeeeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccC
Q 010413 43 SEVVVNGEMIEYYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSG 122 (511)
Q Consensus 43 ~~~~~~a~~~d~~~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g 122 (511)
++|+.+|++++. +++|+++|+|.|+++|++|++++++.+.++||++|.||+|++.++| +.+||++.|.++||+++|.+
T Consensus 7 ~~l~~~ag~~~~-~~~G~~~~lP~g~~l~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~-~~sg~~~~~~~emy~~~d~~ 84 (255)
T cd00779 7 HKLLLRAGFIRQ-TSSGLYSWLPLGLRVLKKIENIIREEMNKIGAQEILMPILQPAELW-KESGRWDAYGPELLRLKDRH 84 (255)
T ss_pred HHHHHHcCCccc-CCCceEEECchHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHH-HhcCCccccCcccEEEecCC
Confidence 478899999965 8999999999999999999999999999999999999999999999 46799999999999999876
Q ss_pred CCCCCCceeecCCCccccchhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHH
Q 010413 123 ESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQ 202 (511)
Q Consensus 123 ~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~ 202 (511)
+++++||||+|+.++.++++++.||++||+|+|||++|||+|.+|+.||+|+|||+|+|+|+++.++++|++|+..
T Consensus 85 ----~~~l~LrPt~e~~~t~~~~~~i~s~~~LPlr~~~~~~~FR~E~~~~~Gl~R~reF~q~e~~~~~~~~~~a~~~~~~ 160 (255)
T cd00779 85 ----GKEFLLGPTHEEVITDLVANEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFDIDEESLEETYEK 160 (255)
T ss_pred ----CCeEEEecCCcHHHHHHHHhccccHhhCCHHHHhCcceecCCCCCCCceeeeeeEeHhhheeccCCHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999998888999999999999999988888899999999
Q ss_pred HHHHHHHHHhhhhccccccccccccccccC-ccceeeEEEeecCCCcccccccccccccccccceeeEEeCCCCceeeee
Q 010413 203 ILELYRRIYEEFLAVPVIKGKKSELEKFAG-GLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAW 281 (511)
Q Consensus 203 ~l~~~~~i~~~lg~ip~~~g~~~~~ek~~g-a~y~~~ie~~~p~~gr~lq~gt~~~lg~~~s~~f~i~y~~~~g~~~~v~ 281 (511)
+++++.++|+.|| +|++++... .+.+.| +..++++|+|||+ ++++|+||+|+||++||++|+++|.|++|+.+++|
T Consensus 161 i~~~~~~il~~Lg-l~~~~~~~~-~~~~gg~~s~~~~~e~~~~~-~~~~e~~s~~~lg~~~sr~~~i~~~~~~~~~~~~~ 237 (255)
T cd00779 161 MYQAYSRIFKRLG-LPFVKVEAD-SGAIGGSLSHEFHVLSPLKI-TKGIEVGHIFQLGTKYSKALGATFLDENGKPKPLE 237 (255)
T ss_pred HHHHHHHHHHHcC-CcEEEEEec-CCCCCCcccEEEEEEEecCC-CCeEEEEeeeecchhHHHhcCcEEECCCCCEEeeE
Confidence 9999999999998 899887763 444444 3346999999997 67999999999999999999999999999999999
Q ss_pred eecccc-ccceeeEEEEE
Q 010413 282 QNSWAY-TTRTIGVMVMV 298 (511)
Q Consensus 282 ~~~~Gi-~eRli~~Lie~ 298 (511)
++|||+ ++|+|+|++|+
T Consensus 238 ~~~~gi~~~R~l~ai~e~ 255 (255)
T cd00779 238 MGCYGIGVSRLLAAIIEQ 255 (255)
T ss_pred ecCccchHHHHHHHHHcC
Confidence 999999 79999999873
No 23
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=100.00 E-value=1.4e-52 Score=424.49 Aligned_cols=257 Identities=20% Similarity=0.318 Sum_probs=228.2
Q ss_pred Hhhhccceeeee--eeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEecc
Q 010413 44 EVVVNGEMIEYY--DISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKS 121 (511)
Q Consensus 44 ~~~~~a~~~d~~--~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~ 121 (511)
+|.++.+++|+. +++|+++|+|.|+.++++|++++++.+.++||++|.||+|++.++|.+ +||++.|.++||++++.
T Consensus 4 ~l~~~~~l~~~~~~~~~G~~~~~p~g~~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~-sg~~~~~~~~my~~~~~ 82 (298)
T cd00771 4 RLGGELELFFFFDEAGPGLPFWLPKGAIIRNELEDFLRELQRKRGYQEVETPIIYNKELWET-SGHWDHYRENMFPFEEE 82 (298)
T ss_pred HHHHHcCCcccCCCCCCcceEEcccHHHHHHHHHHHHHHHHHHcCCEEEECCeecCHHHHhh-CCCccccccCceEeccC
Confidence 455666777664 589999999999999999999999999999999999999999999965 89999999999999754
Q ss_pred CCCCCCCceeecCCCccccchhhhhhhhcCCCCccccccccceEeeeecC-CCCcccchhhhcccCcccccChhhhHHHH
Q 010413 122 GESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSN-PTPFIRSREFLWQEGHTAFATKSEADDEV 200 (511)
Q Consensus 122 g~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~-~~Gl~R~REF~q~e~~~~~~~~e~a~~e~ 200 (511)
+++++||||+|++++.+|++++.||++||+|++|+|+|||+|.++ ++||+|+|||+|.|+|+ +|+++++++|+
T Consensus 83 -----~~~l~LRP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i-~~~~e~~~~e~ 156 (298)
T cd00771 83 -----DEEYGLKPMNCPGHCLIFKSKPRSYRDLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHI-FCTPDQIKEEI 156 (298)
T ss_pred -----CceEEEcccCCHHHHHHHHhhccchhhCCeEEEEecCcccCCCCCCCCCccccccEEECCEEE-EeCCcchHHHH
Confidence 378999999999999999999999999999999999999999875 57999999999999999 58889999999
Q ss_pred HHHHHHHHHHHhhhhccc---cccccccc----------------------------cccccCccceeeEEEee-cCCCc
Q 010413 201 LQILELYRRIYEEFLAVP---VIKGKKSE----------------------------LEKFAGGLYTTTVEAFI-PNTGR 248 (511)
Q Consensus 201 ~~~l~~~~~i~~~lg~ip---~~~g~~~~----------------------------~ek~~ga~y~~~ie~~~-p~~gr 248 (511)
.++++++.++|+.|| ++ +.++.+++ ...+.||+|+|+||+.| +++||
T Consensus 157 ~e~l~~~~~~l~~lg-l~~~~i~l~~~~~~~~~d~e~W~~a~~~l~e~l~~~~~~~~~~~g~~afygpkid~~~~d~~gr 235 (298)
T cd00771 157 KGVLDLIKEVYSDFG-FFDYKVELSTRPEKFIGSDEVWEKAEAALREALEEIGLPYEINEGEGAFYGPKIDFHVKDALGR 235 (298)
T ss_pred HHHHHHHHHHHHHcC-CCcEEEEEEcChhHhcCCHHHHHHHHHHHHHHHHhCCCCceECCCCcccccceEEEEEEeCCCC
Confidence 999999999999998 44 22222210 01245789999999998 45899
Q ss_pred ccccccccccccccccceeeEEeCCCCceee---eeeeccccccceeeEEEEEeeCCCCcccCCcccc
Q 010413 249 GIQGATSHCLGQNFSKMFEIIFENEKGEKAM---AWQNSWAYTTRTIGVMVMVHGDDKGLVLPPRVAS 313 (511)
Q Consensus 249 ~lq~gt~~~lg~~~s~~f~i~y~~~~g~~~~---v~~~~~Gi~eRli~~Lie~~~d~~G~~lP~~laP 313 (511)
.||+||+| ||++++++|+++|.|++|+.+. +|+++||++||+|++|+|+|+ +.||+||||
T Consensus 236 ~~q~~t~q-ld~~~~~~f~l~y~~~~~~~~~pv~ih~~~~Gs~eR~i~~l~e~~~----g~~P~wlaP 298 (298)
T cd00771 236 EWQCSTIQ-LDFNLPERFDLTYIGEDGEKKRPVMIHRAILGSIERFIGILIEHYA----GKFPLWLAP 298 (298)
T ss_pred eeecceeE-eeccChhhcCCEEEccCCCccCCEEEEeCCCCcHHHHHHHHHHhhC----CCCCCccCc
Confidence 99999999 9999999999999999997664 999999999999999999994 699999998
No 24
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.5e-49 Score=388.23 Aligned_cols=355 Identities=18% Similarity=0.287 Sum_probs=295.0
Q ss_pred HHHhhhccceeeeeeeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEecc
Q 010413 42 YSEVVVNGEMIEYYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKS 121 (511)
Q Consensus 42 ~~~~~~~a~~~d~~~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~ 121 (511)
-++++.+-+++-. ..+|+|-|+|.|.+..+++.+.++..+...|.+.|..|++.+++||+ ++|.|+...+|||.+.|+
T Consensus 27 aq~LL~e~GfI~p-s~~G~yq~LPlg~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~~LWe-kTgRw~~~gsEl~rl~Dr 104 (457)
T KOG2324|consen 27 AQELLQEVGFIRP-SSPGLYQLLPLGLRVLNKLCRLLDNEMQSGGAQKISLPILSSKELWE-KTGRWDAMGSELFRLHDR 104 (457)
T ss_pred HHHHHHHhCcccc-CCCCceeeccchHHHHHHHHHHHHHHHHhccCeeEeecccChHHHHH-hcCcccccchhheEeecc
Confidence 3455666666654 68999999999999999999999999999999999999999999996 699999999999999998
Q ss_pred CCCCCCCceeecCCCccccchhhhhhhh-cCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHH
Q 010413 122 GESDLEVPIAIRPTSETVMYPYYSKWIR-GHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEV 200 (511)
Q Consensus 122 g~~~l~~~l~LRPt~e~~~~~~~~~~~~-s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~ 200 (511)
. +.+++|-||.|..+..+.+..+. ||++||+++||+|+.||+|.+|+.||+|-|||+|.|+++|..+++.|.+-+
T Consensus 105 ~----gkq~cL~pThEE~iT~lmat~~~lsykqlPi~vYQigrKfRDElrpRfGLlRgREFlMKDmYsFd~~~etA~qTy 180 (457)
T KOG2324|consen 105 K----GKQMCLTPTHEEDITALMATYIPLSYKQLPIRVYQIGRKFRDELRPRFGLLRGREFLMKDMYSFDSDEETAQQTY 180 (457)
T ss_pred C----CCEeccCCchHHHHHHHHHhcCccccccCcEEeeeechhhhhccCccccchhhHHHHHhhhhcccCCHHHHHHHH
Confidence 7 58999999999999999999887 999999999999999999999888999999999999999888888999999
Q ss_pred HHHHHHHHHHHhhhhccccccccccccc-----------------cc----cCccce---eeEE----EeecCC------
Q 010413 201 LQILELYRRIYEEFLAVPVIKGKKSELE-----------------KF----AGGLYT---TTVE----AFIPNT------ 246 (511)
Q Consensus 201 ~~~l~~~~~i~~~lg~ip~~~g~~~~~e-----------------k~----~ga~y~---~~ie----~~~p~~------ 246 (511)
..+.++|.+||++|+ +|++.......+ .+ ....|. .+++ +.+|.+
T Consensus 181 ~~v~~aY~~iFkqL~-~pfVkv~AdsG~iGG~vShEfhl~~~vgED~l~~C~~C~~s~n~e~~~~sk~~~Cp~C~~~~L~ 259 (457)
T KOG2324|consen 181 QLVDQAYDRIFKQLG-LPFVKVWADSGDIGGEVSHEFHLIHPVGEDTLMSCPSCGYSKNSEDLDLSKIASCPKCNEGRLT 259 (457)
T ss_pred HHHHHHHHHHHHHcC-CCeEEEeecccccCceeeeeEeccCccCccceeecCcCCccCchhhhcCCccccCCcccCCCcc
Confidence 999999999999998 898753322111 00 000011 1111 112433
Q ss_pred -CcccccccccccccccccceeeEEeCCCCceeeeeeecccc-ccceeeEEEEEeeCCCCcccCCcccceeEEEEeeccC
Q 010413 247 -GRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAY-TTRTIGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYK 324 (511)
Q Consensus 247 -gr~lq~gt~~~lg~~~s~~f~i~y~~~~g~~~~v~~~~~Gi-~eRli~~Lie~~~d~~G~~lP~~laP~qV~Iipi~~~ 324 (511)
-+++++|+.|.||..||+.|+.+|.+..|+.+.+|+.|||| ++|+++|.++.-+|++|++||..+||++|.+|+....
T Consensus 260 ~~~~IEVgHtF~LG~kYS~~lna~f~~~~gKpe~l~MgCyGIGVtRllaAa~evls~~~~lrwP~~iAPy~vcli~pk~~ 339 (457)
T KOG2324|consen 260 KTKSIEVGHTFLLGTKYSKPLNAKFVNVEGKPEFLHMGCYGIGVTRLLAAAAEVLSDDKGLRWPSLIAPYKVCLIGPKKG 339 (457)
T ss_pred cccceEEEEEEEeccccccccCceeeeecCCcceEEecceeccHHHHHHHHHHHhccccccccccccCcceeEEeccCCc
Confidence 25788999999999999999999999999988999999999 9999999999999999999999999999955544321
Q ss_pred ccchhHHHHHHHHHHHHHHHc------CceeeecCCCCCCCCCCCCcccccCceeEeeeC-cccccCCcEEEEEccCCCc
Q 010413 325 DADTQGIFDACTATVETLCEA------GICANMDSRDNYSPGWKYSHWEMKGVPLRIEIG-PKDLAKNQVRAVRRDNGAK 397 (511)
Q Consensus 325 ~~~~~~~~~~a~~i~~~Lr~~------Girv~~D~~~~~~lg~k~~~ae~~giP~~iivG-~~E~e~~~Vtvr~r~~~ek 397 (511)
.....+.+++++|-.. --.+.+|||.+.++|+++++|++.|+|++|||| .+-..+..+.|+.+.+|+.
T Consensus 340 -----~~~q~~~ev~~el~~~~~~~~l~~~iLlddr~~ltiG~Ri~dA~~lG~PfviVvg~s~~~~~~~~EV~~~~~ge~ 414 (457)
T KOG2324|consen 340 -----SKSQRAQEVISELLNDEAVGNLHGEILLDDREELTIGKRIKDANRLGIPFVIVVGNSASWDNPEIEVRTIRWGES 414 (457)
T ss_pred -----chhhhHHHHHHHhhcchhhhhhccceeccchhhhhhHHhhhhHHhcCCCEEEEEcccccCCCceEEEEEeecCce
Confidence 2234455666655432 125888999889999999999999999999999 6777788899999988887
Q ss_pred cccccchHHHH
Q 010413 398 VDLPRSSLVER 408 (511)
Q Consensus 398 ~~v~~~el~~~ 408 (511)
.....+.+...
T Consensus 415 ~~l~~~~~~~l 425 (457)
T KOG2324|consen 415 AELDKDGFMKL 425 (457)
T ss_pred eccchhhHHHH
Confidence 77766666443
No 25
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.3e-50 Score=422.25 Aligned_cols=290 Identities=13% Similarity=0.146 Sum_probs=262.6
Q ss_pred CCCCccccccceeecceecccCChhhhHHHhhhccceeeee-----eeceeEEeccchHHHHHHHHHHHHHHHH-hccee
Q 010413 15 GGGKKKEVKKETGLGLSYKKDENFGEWYSEVVVNGEMIEYY-----DISGCYIIRPWAMSIWETMQKFFDAEIK-KMKIQ 88 (511)
Q Consensus 15 ~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~a~~~d~~-----~~~G~~~~~P~g~~i~~~I~~~~~~~~~-~~G~~ 88 (511)
-|.|+++...++.+|.+...+++...+. +|.++.+++|+. +++|+++|+|.|++|+++|++++.+.+. +.||+
T Consensus 113 ~g~~~~~n~~i~~~g~~~~~~f~~~dH~-ei~~~l~l~d~~~~~~~~G~g~~~l~p~ga~L~~aL~~~~~~~~~~~~G~~ 191 (425)
T PRK05431 113 VGKDEDDNVEVRRWGEPREFDFEPKDHW-ELGEKLGILDFERAAKVSGSRFYVLKGDGARLERALIQFMLDLHTEEHGYT 191 (425)
T ss_pred CCCCCCCceEEEEeCCCCCCCCCCCCHH-HHHhhcCceecccccccCCceeEEECcHHHHHHHHHHHHHHHHHHHhcCCE
Confidence 4567777778999998643333333333 568888999984 3677999999999999999999988887 99999
Q ss_pred eeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhhhhhcCCCCccccccccceEeee
Q 010413 89 NCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWE 168 (511)
Q Consensus 89 ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E 168 (511)
+|.||.|.+.++|. .+||++.|.++||++++ ++++|+||+|++++.+|++++.||++||+|++++++|||+|
T Consensus 192 ev~~P~lv~~~~~~-~~G~~~~f~~~ly~i~~-------~~~~L~pTsE~~l~~l~~~~~~s~~dLPlr~~~~s~~fR~E 263 (425)
T PRK05431 192 EVIPPYLVNEESMY-GTGQLPKFEEDLYKIED-------DDLYLIPTAEVPLTNLHRDEILDEEELPLKYTAYSPCFRSE 263 (425)
T ss_pred EEeccccccHHHHh-hcCccccchhhceEecC-------CCEEEEeCCcHHHHHHHhcccCCHHhCCeeEEEEcCEecCC
Confidence 99999999999995 68999999999999963 67999999999999999999999999999999999999999
Q ss_pred ecC----CCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhhhccccccccccccccccCccceeeEEEeec
Q 010413 169 FSN----PTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIP 244 (511)
Q Consensus 169 ~~~----~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~lg~ip~~~g~~~~~ek~~ga~y~~~ie~~~p 244 (511)
.++ ++||+|+|||+|.|+|+ ||+++++++++..|++++.++|+.|| +||++...+..+.+.++.+++++|+|+|
T Consensus 264 ag~~g~~~~GL~Rv~qF~k~E~~~-f~~~e~s~~~~~~~l~~~~~i~~~Lg-lpyr~v~~~s~dlg~~a~~~~DiE~w~p 341 (425)
T PRK05431 264 AGSAGRDTRGLIRVHQFDKVELVK-FTKPEDSYAELEELTANAEEILQKLE-LPYRVVLLCTGDLGFSAAKTYDLEVWLP 341 (425)
T ss_pred CCcCCCCCCceeeeeeeeeeeEEE-EECHHHHHHHHHHHHHHHHHHHHHcC-CcEEEEEcCCcccCCchHheecHHHhCc
Confidence 853 68999999999999997 99999999999999999999999998 9999988888899999999999999999
Q ss_pred CCCcccccccccccccccccceeeEEeCC-CCceeeeee-ecccc-ccceeeEEEEEeeCCCC-cccCCccccee
Q 010413 245 NTGRGIQGATSHCLGQNFSKMFEIIFENE-KGEKAMAWQ-NSWAY-TTRTIGVMVMVHGDDKG-LVLPPRVASVQ 315 (511)
Q Consensus 245 ~~gr~lq~gt~~~lg~~~s~~f~i~y~~~-~g~~~~v~~-~~~Gi-~eRli~~Lie~~~d~~G-~~lP~~laP~q 315 (511)
+.++..++++++++++++|++++++|.+. +|+..++|+ +|+|+ ++|+|++|+|+|+|++| ++||+.|+|+.
T Consensus 342 ~~~~~~ev~s~snc~d~qsrr~~i~~~~~~~~~~~~~htln~t~~a~~R~l~ailE~~q~~~g~i~iP~~l~py~ 416 (425)
T PRK05431 342 SQNTYREISSCSNCTDFQARRANIRYRDEGDGKPELVHTLNGSGLAVGRTLVAILENYQQADGSVTIPEVLRPYM 416 (425)
T ss_pred ccCCeeEEEEecCccchhhhhcCcEEecCCCCceeEEEEeCCchhhHHHHHHHHHHHCCCCCCcEECChhhhccc
Confidence 88899999999999999999999999998 788889997 79998 89999999999999999 99999999985
No 26
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=100.00 E-value=1.4e-49 Score=402.17 Aligned_cols=281 Identities=17% Similarity=0.170 Sum_probs=251.7
Q ss_pred ccceeecceecccCChhhhHHHhhhccceeeee-----eeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccC
Q 010413 23 KKETGLGLSYKKDENFGEWYSEVVVNGEMIEYY-----DISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVS 97 (511)
Q Consensus 23 ~~~r~~g~~~~~~~~~~~~~~~~~~~a~~~d~~-----~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~ 97 (511)
..++.+|...........+. +|.++++++|+. .++|+++|+|.|++++++|++++++.+.+.||++|.||.|++
T Consensus 3 ~~~~~~g~~~~~~~~~~~H~-~i~~~~~l~d~~~~~~~~G~g~~~~~p~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~ 81 (297)
T cd00770 3 VEIRRWGEPRVFDFKPKDHV-ELGEKLDILDFERGAKVSGSRFYYLKGDGALLERALINFALDFLTKRGFTPVIPPFLVR 81 (297)
T ss_pred eEEEEECCCCCCCCCCCCHH-HHHHHCCCccchhhcccCCCceeEECCHHHHHHHHHHHHHHHHHHHCCCEEEECccccc
Confidence 34677886533333333333 568899999874 466799999999999999999999999999999999999999
Q ss_pred hhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhhhhhcCCCCccccccccceEeeeecCC----C
Q 010413 98 PTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNP----T 173 (511)
Q Consensus 98 ~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~----~ 173 (511)
.++|+ .+||++.|.++||++++ ++++|+||+|++++.+|++++.||++||+|++|+|+|||+|.+|. +
T Consensus 82 ~~l~~-~sg~~~~~~~~~f~v~~-------~~~~L~pt~e~~~~~l~~~~~~s~~~LPlr~~~~~~~fR~E~~~~g~~~~ 153 (297)
T cd00770 82 KEVME-GTGQLPKFDEQLYKVEG-------EDLYLIATAEVPLAALHRDEILEEEELPLKYAGYSPCFRKEAGSAGRDTR 153 (297)
T ss_pred HHHHh-hcCcCccChhcccEecC-------CCEEEeecCCHHHHHHHhcccCCHhhCCchheecChhHhCccccCCCCCC
Confidence 99995 69999999999999964 679999999999999999999999999999999999999998753 6
Q ss_pred CcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhhhccccccccccccccccCccceeeEEEeecCCCcccccc
Q 010413 174 PFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGA 253 (511)
Q Consensus 174 Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~lg~ip~~~g~~~~~ek~~ga~y~~~ie~~~p~~gr~lq~g 253 (511)
||+|+|||+|.|+|+ +|+++++++++..+++++.++|+.|| +|+++...+..|.+.++..++++|+|+|+.++..+++
T Consensus 154 GL~R~reF~~~e~~~-f~~~e~~~~~~~~~l~~~~~i~~~lg-l~~~~~~~~~~dl~~~~~~~~d~e~~~p~~~~~~e~~ 231 (297)
T cd00770 154 GLFRVHQFEKVEQFV-FTKPEESWEELEELISNAEEILQELG-LPYRVVNICTGDLGFAAAKKYDIEAWMPGQGKYREIS 231 (297)
T ss_pred CceEEEeeeeeeEEE-EECchHHHHHHHHHHHHHHHHHHHcC-CcEEEEEccCccccCchhhheeeheecCCCCCeEEEE
Confidence 999999999999998 89999999999999999999999998 8999988888888888889999999999878889999
Q ss_pred cccccccccccceeeEEeCCC-Cceeeeee-ecccc-ccceeeEEEEEeeCCCCcccCC-cccce
Q 010413 254 TSHCLGQNFSKMFEIIFENEK-GEKAMAWQ-NSWAY-TTRTIGVMVMVHGDDKGLVLPP-RVASV 314 (511)
Q Consensus 254 t~~~lg~~~s~~f~i~y~~~~-g~~~~v~~-~~~Gi-~eRli~~Lie~~~d~~G~~lP~-~laP~ 314 (511)
+++++++++|++++++|.+.+ |+.+++|+ +++|+ ++|+|++|+|+|+|++|+++|| .|+|+
T Consensus 232 s~s~~~d~~s~r~~i~y~~~~~~~~~~~~~~~~~~~~~~R~l~alle~~~~~~g~v~~P~~l~py 296 (297)
T cd00770 232 SCSNCTDFQARRLNIRYRDKKDGKKQYVHTLNGTALATPRTIVAILENYQTEDGSVVIPEVLRPY 296 (297)
T ss_pred EccCccChhhhhcCcEEecCCCCCeeeeeEecccchHHHHHHHHHHHhCcCCCCcEeCchhhccc
Confidence 999999999999999999984 88889999 78888 9999999999999999988874 57765
No 27
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=100.00 E-value=2.4e-49 Score=416.43 Aligned_cols=288 Identities=16% Similarity=0.171 Sum_probs=256.4
Q ss_pred CCCccccccceeecceecccCChhhhHHHhhhccceeeee-----eeceeEEeccchHHHHHHHHHHHHHHHHhcceeee
Q 010413 16 GGKKKEVKKETGLGLSYKKDENFGEWYSEVVVNGEMIEYY-----DISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNC 90 (511)
Q Consensus 16 ~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~a~~~d~~-----~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev 90 (511)
|.|++++..++.+|.....+.....+. +|+++++++|+. +++|+++|+|.|++++++|++++++.+.+.||++|
T Consensus 117 g~~~~~n~~~~~~g~~~~~~~~~~~H~-~l~~~l~l~d~~~~~~~~G~g~~~~~p~g~~l~~aL~~~~~~~~~~~G~~~v 195 (418)
T TIGR00414 117 GKDEEDNLEVKRWGTPPVFDFKPKPHW-ELGEKLGGLDFDRAVKVTGSRFYYLKNDGAKLERALINFMLDLLEKNGYQEI 195 (418)
T ss_pred CCCcccCeEeeecCCCCCCCCCCCCHH-HHHHhCCCccccccccCCCCCeeeeccHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 456666777899997633333333333 568899999874 36779999999999999999999999999999999
Q ss_pred eeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhhhhhcCCCCccccccccceEeeeec
Q 010413 91 YFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFS 170 (511)
Q Consensus 91 ~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~ 170 (511)
.||.|++.++|. .+||+++|.++||++++ ++++|+||+|++++.+|++++.||++||+|++++++|||+|.+
T Consensus 196 ~~P~lv~~~~~~-~~G~~~~f~~~~y~i~~-------~~~~L~pTsE~~~~~~~~~~i~s~~~LPlr~~~~s~~FR~E~g 267 (418)
T TIGR00414 196 YPPYLVNEESLD-GTGQLPKFEEDIFKLED-------TDLYLIPTAEVPLTNLHRNEILEEEELPIKYTAHSPCFRSEAG 267 (418)
T ss_pred eCCccccHHHHh-hcCccccccccceEecC-------CCEEEEeCCcHHHHHHHhCcCCChHhCCeeEEEEcccccCCCC
Confidence 999999999994 79999999999999963 5799999999999999999999999999999999999999985
Q ss_pred C----CCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhhhccccccccccccccccCccceeeEEEeecCC
Q 010413 171 N----PTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNT 246 (511)
Q Consensus 171 ~----~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~lg~ip~~~g~~~~~ek~~ga~y~~~ie~~~p~~ 246 (511)
+ ++||+|+|||+|.|+|+ ||+++++.+++..+++++.++|+.|| +||++...+..|.+.++.++++||+|+|+.
T Consensus 268 ~~G~~t~GL~Rv~qF~k~E~~~-f~~~e~s~~~~~~~~~~~~~i~~~Lg-lp~r~v~~~t~dlg~~a~~~ydiE~w~p~~ 345 (418)
T TIGR00414 268 SYGKDTKGLIRVHQFNKVELVK-FCKPEESAEELEEMTSDAEQILQELE-LPYRVVNLCSGDLGFSAAKKYDLEVWMPGQ 345 (418)
T ss_pred ccCCCCCccccccceeeeeEEE-EcCHHHHHHHHHHHHHHHHHHHHHcC-CceEEEecCccccccCHhhhhhHHHhCCCc
Confidence 3 57999999999999987 99999999999999999999999998 899988777789999999999999999986
Q ss_pred CcccccccccccccccccceeeEEeCCC-Cceeeeee-ecccc-ccceeeEEEEEeeCCCCcc-cCCcccce
Q 010413 247 GRGIQGATSHCLGQNFSKMFEIIFENEK-GEKAMAWQ-NSWAY-TTRTIGVMVMVHGDDKGLV-LPPRVASV 314 (511)
Q Consensus 247 gr~lq~gt~~~lg~~~s~~f~i~y~~~~-g~~~~v~~-~~~Gi-~eRli~~Lie~~~d~~G~~-lP~~laP~ 314 (511)
+...++++++++++++|++++++|.+.+ |+.+++|+ +++|+ ++|+|++|+|+|+|++|.+ ||..|+|+
T Consensus 346 ~~~~ev~s~sn~~d~qsrr~~i~y~~~~~~~~~~vh~ln~~~~ai~R~i~Aile~~~~~~G~i~iP~~l~py 417 (418)
T TIGR00414 346 NTYREISSCSNCTDFQARRLNIRYKDKNKGKNKYVHTLNGTALAIGRTIVAILENYQTEDGSVEIPEVLRKY 417 (418)
T ss_pred CceEEEEEEcCcchHhHHhCCcEEECCCCCceEEEEeecCcchHHHHHHHHHHHHccCCCCCEeCChhcccc
Confidence 6666999999999999999999999875 45579999 79998 8999999999999999955 99999986
No 28
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-48 Score=404.46 Aligned_cols=335 Identities=20% Similarity=0.200 Sum_probs=273.1
Q ss_pred eeeeeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhccc-CCCcceeeEeccCCCCCCCcee
Q 010413 53 EYYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIE-GFAPEVAWVTKSGESDLEVPIA 131 (511)
Q Consensus 53 d~~~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~-~f~~emy~~~~~g~~~l~~~l~ 131 (511)
.+..++||.||+|..+.+|++|++.+++.++++||++|.||+|+..++|.+.+|... ...+|||.|+|+| ++.++
T Consensus 3 ~~~~prG~~D~lp~d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dkg----gr~la 78 (429)
T COG0124 3 KIQRPRGTRDFLPEDMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDKG----GRSLA 78 (429)
T ss_pred CccCCCCccccChHHHHHHHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEEeCC----CCEEE
Confidence 455799999999999999999999999999999999999999999999988888653 3689999999998 59999
Q ss_pred ecCCCccccchhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHH
Q 010413 132 IRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIY 211 (511)
Q Consensus 132 LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~ 211 (511)
|||+.|+++++++..+.... .+|+|+|++|+||||| +||.| |+|||+|+++++++...+.+|+|++.|+ .++|
T Consensus 79 LRpe~Tapv~R~~~en~~~~-~~p~k~yy~g~vfRyE-rPQ~G--R~RqF~Q~g~E~iG~~~~~~DAEvi~l~---~~~l 151 (429)
T COG0124 79 LRPELTAPVARAVAENKLDL-PKPLKLYYFGPVFRYE-RPQKG--RYRQFYQFGVEVIGSDSPDADAEVIALA---VEIL 151 (429)
T ss_pred ecccCcHHHHHHHHhccccc-cCCeeEEEecceecCC-CCCCC--CceeeEEcCeEEeCCCCcccCHHHHHHH---HHHH
Confidence 99999999999999876555 3899999999999999 78999 9999999999999999999999998887 7899
Q ss_pred hhhhcccccc-----ccc-------------------cccc-------------------------c-------ccCcc-
Q 010413 212 EEFLAVPVIK-----GKK-------------------SELE-------------------------K-------FAGGL- 234 (511)
Q Consensus 212 ~~lg~ip~~~-----g~~-------------------~~~e-------------------------k-------~~ga~- 234 (511)
+.||.-.+.+ |.. +..+ + ...|.
T Consensus 152 ~~lGi~~~~l~iN~~g~l~~~~~~~gi~~~~~l~~~ldk~~k~~~~~L~e~~~~r~~~n~lr~ld~k~~~~~~~~~~ap~ 231 (429)
T COG0124 152 EALGIGGFTLEINSRGILEGRLEYLGIDQREALLRYLDKLDKIGKLELDEDSKRRLKTNPLRVLDSKKDSDQELLKNAPE 231 (429)
T ss_pred HHcCCCcEEEEEcCcccHHHHHHhhcchhHHHHHHHHhhhhhHHHHHhhhhhhhhhhhchHHHHHhccchHHHHHhccHH
Confidence 9888322211 000 0000 0 00010
Q ss_pred ---c-----------------eeeEEEee-cCCCcccc--ccccccc-----ccccccceeeEEeCC----CCceeeeee
Q 010413 235 ---Y-----------------TTTVEAFI-PNTGRGIQ--GATSHCL-----GQNFSKMFEIIFENE----KGEKAMAWQ 282 (511)
Q Consensus 235 ---y-----------------~~~ie~~~-p~~gr~lq--~gt~~~l-----g~~~s~~f~i~y~~~----~g~~~~v~~ 282 (511)
| ...+...+ |+++|||+ +||+|+. +.+-+...+.+|++. .|+..|..+
T Consensus 232 i~~~~~~e~~~~~~~v~~~L~~~g~~~~id~~lvRGLDYYtg~VFE~~~~~~~~~~sI~gGGRYD~Lv~~~gG~~~pavG 311 (429)
T COG0124 232 LLDYLDEESLEHLEELLALLDALGISYEIDPSLVRGLDYYTGTVFEAVTDGLGAQGSVCGGGRYDGLVEEFGGKPTPAVG 311 (429)
T ss_pred hhhhccHHHHHHHHHHHHHHHHcCCCEEEccceecchhhccceEEEEEEcCCccccceecCccchHHHHHhCCCCCCcee
Confidence 0 01122223 78999999 7999973 334567788899753 466556666
Q ss_pred eccccccceeeEEEEEeeCCCCcccCCcccceeEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeeecCCCCCCCCCC
Q 010413 283 NSWAYTTRTIGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWK 362 (511)
Q Consensus 283 ~~~Gi~eRli~~Lie~~~d~~G~~lP~~laP~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~~lg~k 362 (511)
.++| +||++.+|.+. |...| .-++.+|+|+|++. ....+|.+|++.||++|++|++|... ++++++
T Consensus 312 FaiG-veRl~~~l~~~-----~~~~~-~~~~~~v~v~~~~~------~~~~~a~~la~~LR~~g~~~~~~~~~-r~~k~q 377 (429)
T COG0124 312 FAIG-VERLILALEEE-----GKEDP-VETRVDVYVVPLGE------DAEPEALKLAQKLRAAGISVEVDYSG-RKLKKQ 377 (429)
T ss_pred EehH-HHHHHHHHHHc-----CCCCC-cCCCCCEEEEEcCc------hhHHHHHHHHHHHHHcCCcEEEEecc-ccHHHH
Confidence 6666 69999988664 33222 24678999999984 33589999999999999999999987 689999
Q ss_pred CCcccccCceeEeeeCcccccCCcEEEEEccCCCccccccchHHHHHHHH
Q 010413 363 YSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKEL 412 (511)
Q Consensus 363 ~~~ae~~giP~~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~el~~~i~~~ 412 (511)
|++|++.|++++|+||++|+++|+|+|||+.|++|..++++++++.+...
T Consensus 378 ~k~A~~~g~~~~viiGe~E~~~g~v~vKdl~t~eq~~v~~~~~~~~~~~~ 427 (429)
T COG0124 378 FKYADKLGARFAVILGEDELANGVVTVKDLATGEQEEVPLDELVEELKEL 427 (429)
T ss_pred HHHHHHCCCCEEEEEcchHHhcCCEEEeeCCCCccceecHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999887654
No 29
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.2e-45 Score=391.45 Aligned_cols=288 Identities=17% Similarity=0.248 Sum_probs=247.2
Q ss_pred cCCCCccccccceeecceecccCChhhhHHHhhhccceeeeeeeceeEEeccchHHHHHHHHHHHHHH-HHhcceeeeee
Q 010413 14 TGGGKKKEVKKETGLGLSYKKDENFGEWYSEVVVNGEMIEYYDISGCYIIRPWAMSIWETMQKFFDAE-IKKMKIQNCYF 92 (511)
Q Consensus 14 ~~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~a~~~d~~~~~G~~~~~P~g~~i~~~I~~~~~~~-~~~~G~~ev~t 92 (511)
-.|+++.. ..++.+| . ++.+|+.|+.+++++++++|..+++|+++|+|.|++|+++|++++++. +.++||++|.|
T Consensus 173 ~~g~~~~~-~~~~~~~-~--~~~~F~~~h~el~~~~glldk~~G~G~~~~~p~Ga~L~~aL~~~i~d~~~~k~Gyeev~~ 248 (517)
T PRK00960 173 YVGKAEPG-TIVSESK-K--REITFDGDPTEEAEKLGWVKRFPGRGQWFYTPPMTKLFRAFEKLVIEEVLKPLGFDECLF 248 (517)
T ss_pred CCCCCCCC-eEEEEeC-C--CCCCCCCCHHHHHHHCCCccccCCCceEEEEChHHHHHHHHHHHHHHhhHhhcCCeEEEC
Confidence 45556656 8999999 4 478899999999999999999899999999999999999999999876 68889999999
Q ss_pred ecccChhhhhhhhhcccCCCcceeeEeccCC------------------------CCC-CCceeecCCCccccchhhhhh
Q 010413 93 PLFVSPTVLQKEKDHIEGFAPEVAWVTKSGE------------------------SDL-EVPIAIRPTSETVMYPYYSKW 147 (511)
Q Consensus 93 P~l~~~~l~~~~sg~~~~f~~emy~~~~~g~------------------------~~l-~~~l~LRPt~e~~~~~~~~~~ 147 (511)
|.|++.++|. .+||+++|.++||++++.+. +.+ ++.++||||+|++++.+|+++
T Consensus 249 P~Li~~ell~-ksGhl~~F~e~my~V~~~~~d~e~~~~~~~~l~~T~Evpl~~~~~~L~~~~yvLrPa~Cp~~y~~~~~~ 327 (517)
T PRK00960 249 PKLIPLEVMY-KMRYLEGLPEGMYYVCPPKRDPEYFEEFVDEMMVKKEVPIEKLKEKLRDPGYVLAPAQCEPFYQFFQGE 327 (517)
T ss_pred CcccCHHHHh-hcCCccCChhhceEeeccccccccccchhhhccccccccccccccccccccccccccCcHHHHHHHhCC
Confidence 9999999996 58999999999999974210 011 356899999999999999999
Q ss_pred hhcCCCCcccccc-ccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhhhccc-ccc----
Q 010413 148 IRGHRDLPLKLNQ-WCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVP-VIK---- 221 (511)
Q Consensus 148 ~~s~r~LPlkl~q-~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~lg~ip-~~~---- 221 (511)
+.|+++||+|+++ +|+|||+|....+||+|+|||+|.|+|+ +|+++|+.+++..+++....+++.|+ +| ++.
T Consensus 328 ils~rdLPLrl~e~sG~cFR~EsGs~~GL~RV~eF~kvE~h~-f~tpEqs~ee~e~ll~~~e~i~~~Lg-Lp~~r~v~~D 405 (517)
T PRK00960 328 TVDVDELPIKFFDRSGWTYRWEGGGAHGLERVNEFHRIEIVW-LGTPEQVEEIRDELLKYAHILAEKLD-LEYWREVGDD 405 (517)
T ss_pred cCChhhCCHHHhhccCCceeCCCCCCCCCcccceeEEEEEEE-EeCHHHHHHHHHHHHHHHHHHHHHcC-CCceEEeccc
Confidence 9999999999999 7799999965577999999999999996 99999999999999999999999998 89 432
Q ss_pred -----cccccc-c-cccCccceeeEEEeec---CCCcccccccccccccccccceeeEEeCCCCceeeeeeecccc-ccc
Q 010413 222 -----GKKSEL-E-KFAGGLYTTTVEAFIP---NTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAY-TTR 290 (511)
Q Consensus 222 -----g~~~~~-e-k~~ga~y~~~ie~~~p---~~gr~lq~gt~~~lg~~~s~~f~i~y~~~~g~~~~v~~~~~Gi-~eR 290 (511)
+.+... + .|.+ .+++++|+||| +.+++.+++++.+.+++|+++|+++|. +|+ ++|++|+|+ ++|
T Consensus 406 PFf~~~~k~~~~d~~f~~-~~tydiE~wmP~~~~~gk~~ev~S~S~hgd~farrfnIk~~--~g~--~~hTnctG~g~eR 480 (517)
T PRK00960 406 PFYLEGRGLEDRGIEFPD-VPKYEMELWLPYRGDERKWVAVTSANVHGTHFVEGFNIKDY--KGR--KLWTGCTGYGLER 480 (517)
T ss_pred ccccccCccccccccCcc-ccceeEEEEecCccCCCCEEEEEeeeeccchhhHhhCcccC--CCC--eEeecceeeHHHH
Confidence 222222 4 3444 78999999999 668878887777779999999999873 343 699999999 899
Q ss_pred eeeEEEEEeeCCCCcccCCcccce
Q 010413 291 TIGVMVMVHGDDKGLVLPPRVASV 314 (511)
Q Consensus 291 li~~Lie~~~d~~G~~lP~~laP~ 314 (511)
+++||+++||.+.| .||..+.|+
T Consensus 481 ~l~AlLe~hG~d~~-~wPe~~r~~ 503 (517)
T PRK00960 481 WVIGFLAQKGFDPE-NWPEEIRKR 503 (517)
T ss_pred HHHHHHHhcCCCCC-cCCHHHHHh
Confidence 99999999999888 899877654
No 30
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=100.00 E-value=3e-44 Score=381.02 Aligned_cols=337 Identities=15% Similarity=0.116 Sum_probs=267.6
Q ss_pred eeeeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhh-cccCCCcceeeEeccCCCCCCCceee
Q 010413 54 YYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKD-HIEGFAPEVAWVTKSGESDLEVPIAI 132 (511)
Q Consensus 54 ~~~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg-~~~~f~~emy~~~~~g~~~l~~~l~L 132 (511)
+.+++|+.||+|..+.+++.|++.+++.++++||++|.||+|+..++|.+.+| |++.+.++||.|.|.+ ++.++|
T Consensus 4 ~~~p~G~~D~lp~~~~~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~d~~----g~~l~L 79 (430)
T CHL00201 4 IQAIRGTKDILPDEINYWQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTDRS----NRDITL 79 (430)
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEEEcCC----CCEEEe
Confidence 35799999999999999999999999999999999999999999999976555 7777889999999876 589999
Q ss_pred cCCCccccchhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHh
Q 010413 133 RPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYE 212 (511)
Q Consensus 133 RPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~ 212 (511)
||+.|+++++++.....+++++|+|+||+|+|||+| +|+.| |+|||+|+++|+++.....+|+|++.++ .++|+
T Consensus 80 Rpd~T~~iaR~~~~~~~~~~~~p~R~~y~g~vfR~e-~~q~G--R~Ref~Q~g~EiiG~~~~~aD~Evi~l~---~~~l~ 153 (430)
T CHL00201 80 RPEGTAGIVRAFIENKMDYHSNLQRLWYSGPMFRYE-RPQSG--RQRQFHQLGIEFIGSIDARADTEVIHLA---MQIFN 153 (430)
T ss_pred CCCCcHHHHHHHHHccccccCCCeEEEEEcceecCC-CCcCC--ccceeEEeceEEECCCChhhHHHHHHHH---HHHHH
Confidence 999999999998777667778999999999999999 67899 9999999999999999999999987666 78888
Q ss_pred hhhcccc--ccccc------------------------cc-------------ccc-c-------cCcc-----------
Q 010413 213 EFLAVPV--IKGKK------------------------SE-------------LEK-F-------AGGL----------- 234 (511)
Q Consensus 213 ~lg~ip~--~~g~~------------------------~~-------------~ek-~-------~ga~----------- 234 (511)
.+|.-.+ .++.. +. ++. . ..|.
T Consensus 154 ~lGl~~~~i~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~l~~k~~~~~~~~~~a~~l~~~~~~~~~ 233 (430)
T CHL00201 154 ELQVKNLILDINSIGKLEDRQSYQLKLVEYLSQYQDDLDTDSQNRLYSNPIRILDSKNLKTQEILDGAPKISDFLSLEST 233 (430)
T ss_pred HcCCCceEEEECCCCchhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHhhhHHHhhccCccHHHHHhhhHHHHhhhhHHHH
Confidence 8873122 12210 00 000 0 0000
Q ss_pred ----------ceeeEEEee-cCCCcccc--ccccccc-----ccccccceeeEEeCC----CCceeeeeeecccccccee
Q 010413 235 ----------YTTTVEAFI-PNTGRGIQ--GATSHCL-----GQNFSKMFEIIFENE----KGEKAMAWQNSWAYTTRTI 292 (511)
Q Consensus 235 ----------y~~~ie~~~-p~~gr~lq--~gt~~~l-----g~~~s~~f~i~y~~~----~g~~~~v~~~~~Gi~eRli 292 (511)
....+...+ |++.|++. +|++|+. +...+..-+.||++- .|+..|+.+.++| ++|++
T Consensus 234 ~~l~~~~~~l~~~g~~~~~Dl~lvRgldYYTG~vFE~~~~~~~~~~~i~gGGRYD~L~~~fg~~~~PavGfa~g-~erl~ 312 (430)
T CHL00201 234 EHFYDVCTYLNLLNIPYKINYKLVRGLDYYNDTAFEIKTLSSNGQDTICGGGRYDSLIHQLGGPKTPAVGCAIG-LERLL 312 (430)
T ss_pred HHHHHHHHHHHHcCCcEEECcccccCCccccccEEEEEECCCCCcceeeeccchHHHHHHhCCCCCCeeEEEec-HHHHH
Confidence 001122223 56779888 5778853 122345567788642 2344577766666 69999
Q ss_pred eEEEEEeeCCCCcccCCcccceeEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeeecCCCCCCCCCCCCcccccCce
Q 010413 293 GVMVMVHGDDKGLVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVP 372 (511)
Q Consensus 293 ~~Lie~~~d~~G~~lP~~laP~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~~lg~k~~~ae~~giP 372 (511)
.+|.+. ...|. .|.+|+|+|++ ++...+|.++++.||++|++|++|... .++++++++|++.|+|
T Consensus 313 ~~l~~~------~~~~~--~~~~v~v~~~~------~~~~~~a~~ia~~LR~~Gi~veid~~~-~~l~k~~k~A~~~~~~ 377 (430)
T CHL00201 313 LIAKDN------IILPK--QSIDVYIATQG------LKAQKKGWEIIQFLEKQNIKFELDLSS-SNFHKQIKQAGKKRAK 377 (430)
T ss_pred HHHhcc------ccCCC--CCCCEEEEEcC------HHHHHHHHHHHHHHHhCCCeEEEeeCC-CCHHHHHHHHHHcCCC
Confidence 877542 22332 56789999987 356789999999999999999999987 5999999999999999
Q ss_pred eEeeeCcccccCCcEEEEEccCCCccccccchHHHHHHHHHHHH
Q 010413 373 LRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLDEI 416 (511)
Q Consensus 373 ~~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~el~~~i~~~l~~~ 416 (511)
++++||++|+++++|+||++.++++..++++++++.+.++...|
T Consensus 378 ~viiiG~~E~~~~~vtvk~l~~~~q~~i~~~~~~~~~~~~~~~~ 421 (430)
T CHL00201 378 ACIILGDNEIMDNCITIKWLDEQVQENAQYSNFKQEISYLKKKI 421 (430)
T ss_pred EEEEEechHHhCCcEEEEECCCCCcEEEcHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999988777766654
No 31
>PLN02678 seryl-tRNA synthetase
Probab=100.00 E-value=2.1e-44 Score=377.99 Aligned_cols=292 Identities=14% Similarity=0.113 Sum_probs=260.2
Q ss_pred cCCCCccccccceeecceecccCChhhhHHHhhhccceeeee-----eeceeEEeccchHHHHHHHHHHHHHHHHhccee
Q 010413 14 TGGGKKKEVKKETGLGLSYKKDENFGEWYSEVVVNGEMIEYY-----DISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQ 88 (511)
Q Consensus 14 ~~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~a~~~d~~-----~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ 88 (511)
.-|||+++++++|+||.++....-.++| +|.++.+++|+. ++.++++|.+.|++|.++|++++.+.+.+.||+
T Consensus 117 P~G~de~~n~~vr~~g~~~~~~~~~dH~--~Lg~~l~l~d~~~~~~vsG~~~y~l~g~ga~L~~AL~~y~ld~~~~~Gy~ 194 (448)
T PLN02678 117 PVSNDEANNAVVRTWGEKRQEPKLKNHV--DLVELLGIVDTERGADVAGGRGYYLKGAGVLLNQALINFGLAFLRKRGYT 194 (448)
T ss_pred CCCCCcCCCEEEEEEcCCCCCCCCCCHH--HHHhhccCccchhhhhhcCceeEEECCHHHHHHHHHHHHHHHHHHHcCCE
Confidence 4578999999999999986554334555 667777888885 234466666799999999999999999999999
Q ss_pred eeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhhhhhcCCCCccccccccceEeee
Q 010413 89 NCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWE 168 (511)
Q Consensus 89 ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E 168 (511)
+|.||.|.+.++|. .+||++.|.++||.+.+.+ ++++|.||+|++++.++++.+.||++||+|++++++|||+|
T Consensus 195 ~V~~P~lv~~~~~~-~sG~~~~f~e~my~i~~~~-----~~~yLi~TaE~~l~~~h~~~~~s~~eLPlr~~~~s~cfR~E 268 (448)
T PLN02678 195 PLQTPFFMRKDVMA-KCAQLAQFDEELYKVTGEG-----DDKYLIATSEQPLCAYHRGDWIDPKELPIRYAGYSTCFRKE 268 (448)
T ss_pred EEECcccccHHHHh-hcCCcccchhcCceecCCC-----CceeeecccccccChHHhcccCCHHhCCceeEEeccccccc
Confidence 99999999999994 7999999999999997543 57889999999999999999999999999999999999999
Q ss_pred ec----CCCCcccchhhhcccCcccccChhh--hHHHHHHHHHHHHHHHhhhhccccccccccccccccCccceeeEEEe
Q 010413 169 FS----NPTPFIRSREFLWQEGHTAFATKSE--ADDEVLQILELYRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTVEAF 242 (511)
Q Consensus 169 ~~----~~~Gl~R~REF~q~e~~~~~~~~e~--a~~e~~~~l~~~~~i~~~lg~ip~~~g~~~~~ek~~ga~y~~~ie~~ 242 (511)
++ .++||+|+|||+|.|+.+ +|++++ +.+++..|++.+..||+.|+ +||++...+..|.+..+..++|||+|
T Consensus 269 ags~G~~~~GL~RvhqF~KvE~f~-~~~pe~~~s~~~~e~~l~~~~~i~~~L~-lpyrvv~~~sgdlg~~a~~~yDiE~W 346 (448)
T PLN02678 269 AGSHGRDTLGIFRVHQFEKVEQFC-ITSPNGNESWEMHEEMLKNSEDFYQSLG-IPYQVVSIVSGALNDAAAKKYDLEAW 346 (448)
T ss_pred cccCCCcCCcceEEEEEEEEEEEE-EECCCchhHHHHHHHHHHHHHHHHHHcC-CCeEEEeecccccCCchhhceeeEee
Confidence 85 467999999999999987 899998 99999999999999999998 99999888888888888889999999
Q ss_pred ecCCCcccccccccccccccccceeeEEeCC---CCceeeeeee-cccc-ccceeeEEEEEeeCCCCcccCCccccee
Q 010413 243 IPNTGRGIQGATSHCLGQNFSKMFEIIFENE---KGEKAMAWQN-SWAY-TTRTIGVMVMVHGDDKGLVLPPRVASVQ 315 (511)
Q Consensus 243 ~p~~gr~lq~gt~~~lg~~~s~~f~i~y~~~---~g~~~~v~~~-~~Gi-~eRli~~Lie~~~d~~G~~lP~~laP~q 315 (511)
+|+.++..+++++.|+++++|+|.+++|.+. +|+.+++|+. +.|+ +.|+|.||+|+|++.+|+.+|..|.|+-
T Consensus 347 ~P~~~~y~EvsS~Snc~D~QaRRl~iryr~~~~~~~~~~~vHTLNgt~lA~~R~l~AiLEn~Q~~dgi~iP~vL~pym 424 (448)
T PLN02678 347 FPASKTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTLCCILENYQTEDGVRVPEVLQPFM 424 (448)
T ss_pred ccccCCceEEeeecccccHhhhcccceecccccCCCCceeEEecCCchhHHHHHHHHHHHhCcCCCCeECChhhhhhc
Confidence 9999999999999999999999999999976 5567799994 6777 9999999999999999999999999985
No 32
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=100.00 E-value=2.5e-44 Score=375.74 Aligned_cols=267 Identities=19% Similarity=0.286 Sum_probs=230.6
Q ss_pred cceeecceecccCChhhhHHHhhhccceeeeeeeceeEEeccchHHHHHHHHHHHHH-HHHhcceeeeeeecccChhhhh
Q 010413 24 KETGLGLSYKKDENFGEWYSEVVVNGEMIEYYDISGCYIIRPWAMSIWETMQKFFDA-EIKKMKIQNCYFPLFVSPTVLQ 102 (511)
Q Consensus 24 ~~r~~g~~~~~~~~~~~~~~~~~~~a~~~d~~~~~G~~~~~P~g~~i~~~I~~~~~~-~~~~~G~~ev~tP~l~~~~l~~ 102 (511)
.++.+|.. +..+|+.|+.+|+++++++|..+++|+++|.|+|++||++|++++.+ .+++.||+++++|.|++.++|.
T Consensus 181 ~~~~~~~~--~~~~F~~~h~el~~k~glidk~~G~G~~vl~p~ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~ 258 (520)
T TIGR00415 181 IIAESKAK--RDFFFDGDPTDEAEKLGWVKKFPGRGQWFYGPKITALFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMN 258 (520)
T ss_pred eeeecCCC--CCCCCCCCHHHHHHHCCCeeEEcccCEEEEeCHHHHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHHHc
Confidence 34555665 56788899999999999999999999999999999999999999964 6678899999999999999996
Q ss_pred hhhhcccCCCcceeeEeccCC--------------------CCC----C-CceeecCCCccccchhhhhhhhcCCCCccc
Q 010413 103 KEKDHIEGFAPEVAWVTKSGE--------------------SDL----E-VPIAIRPTSETVMYPYYSKWIRGHRDLPLK 157 (511)
Q Consensus 103 ~~sg~~~~f~~emy~~~~~g~--------------------~~l----~-~~l~LRPt~e~~~~~~~~~~~~s~r~LPlk 157 (511)
+ +||+++|.++||++++.++ ++| . ++++|+||+|++++.+|++|+.++++||++
T Consensus 259 k-~ghl~gF~~e~y~Vt~~~~d~d~~~~f~~~~~~~~eipi~~L~~~le~~~~vL~PTSE~ply~~~a~~Ils~~dLPlk 337 (520)
T TIGR00415 259 K-MRYLEGLPEGMYYCCAPKRDPELFEEFKNELIIKKEIPIDKLKNGIKDPGYVIAPAQCEPFYQFFEGEVIDAEDKPIK 337 (520)
T ss_pred c-cCCCCCCchhheEEecCCCCcchhhccccccccccccccccccccccCCceEEeCccHHHHHHHHhccccChhhCCee
Confidence 5 6999999999999975331 111 2 379999999999999999999999999999
Q ss_pred ccc-ccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhhhcccccc----------ccccc
Q 010413 158 LNQ-WCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIK----------GKKSE 226 (511)
Q Consensus 158 l~q-~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~lg~ip~~~----------g~~~~ 226 (511)
+++ +++|||||.++++||+|+|||+|+|+|+ ++++++|.++...+++.+..+++.|+ +||.+ |.++.
T Consensus 338 ~~~~s~~CFR~EaGstrGL~RvhEF~kvE~v~-~~tpEea~e~~e~mle~~~~~l~~L~-Lpyrv~~adDPFf~~g~k~~ 415 (520)
T TIGR00415 338 FFDRSGWTYRWEAGGAKGLDRVHEFLRVECVW-IAEPEETEEIRDKTLELAEDAADELD-LEWWTEVGDDPFYLEGRKKE 415 (520)
T ss_pred EEEEecCeEeCCCCCCCCCceeeEEEEEEEEE-EeCHHHHHHHHHHHHHHHHHHHHHcC-CCeEEeecCCcccccccCcc
Confidence 999 7789999987789999999999999999 99999999999999999999998887 86553 34443
Q ss_pred cc--cccCccceeeEEEeecC-----CCcccccccccccccccccceeeEEeCCCCceeeeeeecccc-ccceeeEEEEE
Q 010413 227 LE--KFAGGLYTTTVEAFIPN-----TGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAY-TTRTIGVMVMV 298 (511)
Q Consensus 227 ~e--k~~ga~y~~~ie~~~p~-----~gr~lq~gt~~~lg~~~s~~f~i~y~~~~g~~~~v~~~~~Gi-~eRli~~Lie~ 298 (511)
++ +|+++ .++++++++|+ .|+++|.+|+| |++|+++|+++ +|+..++|++|||+ ++|++++|+++
T Consensus 416 ~~dl~F~~a-~KyDlevwiP~~~~~~~g~AlqS~n~H--g~hF~k~F~I~----~~~~~~a~ttC~G~gleR~i~Ali~~ 488 (520)
T TIGR00415 416 DRGIEFPDV-PKYEMRLSLPGIEDERKGVAVTSANVH--GTHFIEGFRIK----DAKGLNIWTGCTGIGISRWIVGFLAQ 488 (520)
T ss_pred cccccCccc-ceEEEEEEEccccCCCCCcEEEEeech--hcccccccCcc----cCCCCeEEEeeeeccHHHHHHHHHHH
Confidence 43 55554 67888998863 46789999999 99999999997 45556999999999 69999999999
Q ss_pred eeCC
Q 010413 299 HGDD 302 (511)
Q Consensus 299 ~~d~ 302 (511)
||-|
T Consensus 489 HG~d 492 (520)
T TIGR00415 489 KGFE 492 (520)
T ss_pred hCCC
Confidence 9743
No 33
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3e-42 Score=357.78 Aligned_cols=349 Identities=19% Similarity=0.210 Sum_probs=263.6
Q ss_pred eeeceeEEeccchHHHHHHHHHHHHHHH--HhcceeeeeeecccChhhhhhhhhcccCCCcceeeEecc-----------
Q 010413 55 YDISGCYIIRPWAMSIWETMQKFFDAEI--KKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKS----------- 121 (511)
Q Consensus 55 ~~~~G~~~~~P~g~~i~~~I~~~~~~~~--~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~----------- 121 (511)
..+.|+|||.|.|..|.++|++.|++.+ .+-+..++++|+|.+..+| +.|||++.|.+-|-...+.
T Consensus 27 gg~~g~~DyGPlG~~lk~ni~~~W~~~~v~~~~~~~~id~~il~~~~v~-~aSGH~~~F~DpmV~CkkCk~ryRaD~Lii 105 (539)
T PRK14894 27 GGLQGVYDYGPLGVELKNNIIADWWRTNVYERDDMEGLDAAILMNRLVW-KYSGHEETFNDPLVDCRDCKMRWRADHIQG 105 (539)
T ss_pred CCcccccCcCchhHHHHHHHHHHHHHHHeeccCCEEEeeccccCCHhHe-eeccCCCCCCCceeECCCCCccccCcccee
Confidence 4689999999999999999999999998 4668899999999999999 6899999998765333222
Q ss_pred -----CCCC-----------------C---CCceeecCCCccccchhhhhhhhcCC-CCccccccccceEeeeecCCCCc
Q 010413 122 -----GESD-----------------L---EVPIAIRPTSETVMYPYYSKWIRGHR-DLPLKLNQWCNVVRWEFSNPTPF 175 (511)
Q Consensus 122 -----g~~~-----------------l---~~~l~LRPt~e~~~~~~~~~~~~s~r-~LPlkl~q~g~vfR~E~~~~~Gl 175 (511)
|... . ....+|||+..+++...|++.....+ .||+-+.|+|++||+|.+|+.||
T Consensus 106 kCP~CGs~dLTe~~~FNLMF~T~iGp~~~~~~~~yLRPETAQGiFvnFk~ll~~~~~klPFgiaQIGk~FRNEIsPr~~l 185 (539)
T PRK14894 106 VCPNCGSRDLTEPRPFNMMFRTQIGPVADSDSFAYLRPETAQGIFVNFANVLATSARKLPFGIAQVGKAFRNEINPRNFL 185 (539)
T ss_pred eCCCCCCcCCCcceeccccceeccccCCCcCcceeeCcccchHHHHHHHHHHHhcCCCCCeeEEeeeccccCccCCCCce
Confidence 2101 1 13589999999999999999887554 89999999999999999999999
Q ss_pred ccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhhhcccc-cccc--ccccccccCccceeeEEEeecCCCccccc
Q 010413 176 IRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPV-IKGK--KSELEKFAGGLYTTTVEAFIPNTGRGIQG 252 (511)
Q Consensus 176 ~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~lg~ip~-~~g~--~~~~ek~~ga~y~~~ie~~~p~~gr~lq~ 252 (511)
+|+|||+|.|++. |++|+.+.+.+...+.....++.++| |+- .+.. ....|...=|..+.++|..+|+.| ..++
T Consensus 186 ~R~REF~q~EiE~-Fv~P~~~~~~~~y~~~~~~~fl~~iG-i~~~~lrfr~h~~~ElAHYa~~~~D~e~~~p~~G-w~E~ 262 (539)
T PRK14894 186 FRVREFEQMEIEY-FVMPGTDEEWHQRWLEARLAWWEQIG-IPRSRITIYDVPPDELAHYSKRTFDLMYDYPNIG-VQEI 262 (539)
T ss_pred eecccchhheEEE-EeCCCchHHHHHHHHHHHHHHHHHhC-CCHHHeeeeecCcHHhhhhhhccEEEEEECCCCC-eEEE
Confidence 9999999999998 89998877777777776677888888 542 2211 111121111223467776666533 1122
Q ss_pred -----cccccccccc--c--------------cceeeEEeCC-CCcee--eeeeeccccccceeeEEEEE-ee-------
Q 010413 253 -----ATSHCLGQNF--S--------------KMFEIIFENE-KGEKA--MAWQNSWAYTTRTIGVMVMV-HG------- 300 (511)
Q Consensus 253 -----gt~~~lg~~~--s--------------~~f~i~y~~~-~g~~~--~v~~~~~Gi~eRli~~Lie~-~~------- 300 (511)
-|.+.|..+. + ...++.|.+. .|++. +|.-.|+| ++|++.+++++ |.
T Consensus 263 ~Gia~RtdyDL~~H~~~s~~~~l~~~~~~~~~s~~~l~~~~~~~~~~~iP~ViEpS~G-~dR~~~a~l~~~y~~~~~~~~ 341 (539)
T PRK14894 263 EGIANRTDYDLGSHSKDQEQLNLTARVNPNEDSTARLTYFDQASGRHVVPYVIEPSAG-VGRCMLAVMCEGYAEELTKAI 341 (539)
T ss_pred EEeecccccCHHHHhhhcccCCceeeeccccCCCceEEEEeccCCcccCCceeecCcc-hhHHHHHHHHHHHhhhhhccc
Confidence 1223332211 1 1234455443 33332 56667999 49988776543 11
Q ss_pred -----------------------------------------------------------------------------CC-
Q 010413 301 -----------------------------------------------------------------------------DD- 302 (511)
Q Consensus 301 -----------------------------------------------------------------------------d~- 302 (511)
|+
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~ 421 (539)
T PRK14894 342 PGEKLAAVGDALEAFLKSVGRSEKLAGEARDAILARGEALLQALPERLPEVEQLLAMPGADQIELGKKLRGQAQPLIDEH 421 (539)
T ss_pred ccccccccccchhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCcc
Confidence 01
Q ss_pred CC--cccCCcccceeEEEEeeccCccchhHHHHHHHHHHHHHHHcCc-eeeecCCCCCCCCCCCCcccccCceeEeee--
Q 010413 303 KG--LVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVETLCEAGI-CANMDSRDNYSPGWKYSHWEMKGVPLRIEI-- 377 (511)
Q Consensus 303 ~G--~~lP~~laP~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Gi-rv~~D~~~~~~lg~k~~~ae~~giP~~iiv-- 377 (511)
.. +.||+||||+||.|+|+.++. +++.+||.+|++.|+++|+ ||.+|++ + ++|+|+++++..|+||+|+|
T Consensus 422 ~rgvLplp~wLAPvQVaVLPLs~~~---~~l~eyAkeI~~~L~~~Gi~rv~~Dds-e-sIGKKyRraDeiGiPy~ITVD~ 496 (539)
T PRK14894 422 YRTVLRLKPRLAPIKVAVFPLKRNH---EGLVATAKAVRRQLQVGGRMRTVYDDT-G-AIGKLYRRQDEIGTPFCITVDF 496 (539)
T ss_pred cceecCCCcCCCCceEEEEeccccc---cchHHHHHHHHHHHHHCCCceEEEcCC-C-CHhHHHHhhhccCCCEEEEEec
Confidence 23 345699999999999998532 3467999999999999998 9999994 3 99999999999999999999
Q ss_pred -----CcccccCCcEEEEEccCCCccccccchHHHHHHHHH
Q 010413 378 -----GPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELL 413 (511)
Q Consensus 378 -----G~~E~e~~~Vtvr~r~~~ek~~v~~~el~~~i~~~l 413 (511)
|++|+++++||||+|++++|..|+++++++.|.+.+
T Consensus 497 ~Tl~dGdkE~e~gTVTVR~RDs~eQ~rV~ideli~~L~~~~ 537 (539)
T PRK14894 497 DTIGQGKDPALAGTVTVRDRDTMAQERVPISELEAYLRDRV 537 (539)
T ss_pred cccccccchhhcCeEEEEEeCCCeEEEEEHHHHHHHHHHHh
Confidence 999999999999999999999999999998887654
No 34
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=100.00 E-value=2.8e-41 Score=360.47 Aligned_cols=355 Identities=19% Similarity=0.236 Sum_probs=254.2
Q ss_pred Hhhhccceeee-----eeeceeEEeccchHHHHHHHHHHHHHHH-HhcceeeeeeecccChhhhhhhhhcccCCCcceee
Q 010413 44 EVVVNGEMIEY-----YDISGCYIIRPWAMSIWETMQKFFDAEI-KKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAW 117 (511)
Q Consensus 44 ~~~~~a~~~d~-----~~~~G~~~~~P~g~~i~~~I~~~~~~~~-~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~ 117 (511)
+++.+.+.+-. ..++|+|||.|.|..+.++|++.|++.| ...|+.+|.+|+|.|..+| +.|||++.|.+-|..
T Consensus 8 ~l~~rrgf~~~s~eIYgG~~g~~dygP~G~~lk~ni~~~wr~~~v~~~~~~ei~~~~i~~~~v~-~aSGh~~~F~D~mv~ 86 (551)
T TIGR00389 8 SLLKRRGFVFQSFEIYGGLAGFWDYGPLGAVLKNNIKNAWRKFFIKNERVLEIDTPIITPEEVL-KASGHVDNFTDWMVD 86 (551)
T ss_pred HHHHhcCCccccchhccCccceeccCcchHHHHHHHHHHHHHHHHhcCCceEeeccccCCHHHH-HhcCCccccCCceee
Confidence 44556665532 2489999999999999999999999999 5778999999999999999 689999999987755
Q ss_pred EeccC----------------------------------------CCCC------------------CCceeecCCCccc
Q 010413 118 VTKSG----------------------------------------ESDL------------------EVPIAIRPTSETV 139 (511)
Q Consensus 118 ~~~~g----------------------------------------~~~l------------------~~~l~LRPt~e~~ 139 (511)
.+..| +..+ +...+|||+..++
T Consensus 87 ~~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~i~~~~i~~p~~g~~~~~~~~~FNLMF~t~iGp~~~~~~yLRPETAQG 166 (551)
T TIGR00389 87 CKSCKERFRADHLIEEKLGKRLWGFSGPELNEVMEKYDINCPNCGGENLTEVRSFNLMFQTEIGVVGKRKGYLRPETAQG 166 (551)
T ss_pred cCCCCCEecchHHHHHHhhhhcccCCHHHHHHHHHHcCCCCCCCCCCCCCCccccccceeeccCCCCCcccccccccchh
Confidence 43321 1001 2468899999999
Q ss_pred cchhhhhhhhcCC-CCccccccccceEeeeecCCCCcccchhhhcccCcccccChhh-hHHHHHHHHHH-----------
Q 010413 140 MYPYYSKWIRGHR-DLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSE-ADDEVLQILEL----------- 206 (511)
Q Consensus 140 ~~~~~~~~~~s~r-~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~-a~~e~~~~l~~----------- 206 (511)
+...|++...+.+ .||+-+.|+|++||+|.+|+.||+|+|||+|.|++. |++|++ ....+..+.+.
T Consensus 167 iFvnFk~l~~~~~~klPfgiaQiGk~fRNEIsPr~~l~R~REF~q~EiE~-F~~p~~~~~~~f~~~~~~~~~l~~~~~~~ 245 (551)
T TIGR00389 167 IFINFKRLLQFFRRKLPFGVAQIGKSFRNEISPRNGLFRVREFEQAEIEF-FVHPLDKSHPKFEEVKQDILPLLPRQMQE 245 (551)
T ss_pred hHHhHHHHHHhcCCCCCeeehhhhHhhhcccCcccceEEeehhhhchhhe-ecCcccccchhhHHHHHHHHhhccchhhh
Confidence 9999999887655 899999999999999999999999999999999998 888852 11111112211
Q ss_pred -----------------------HHHHHhhhhcccc-cccc--ccccccccCccceeeEEEeecCCCccc-cc-c----c
Q 010413 207 -----------------------YRRIYEEFLAVPV-IKGK--KSELEKFAGGLYTTTVEAFIPNTGRGI-QG-A----T 254 (511)
Q Consensus 207 -----------------------~~~i~~~lg~ip~-~~g~--~~~~ek~~ga~y~~~ie~~~p~~gr~l-q~-g----t 254 (511)
...++.++| |+- .+.. ....|...=|..+.|+|..+|. || ++ | |
T Consensus 246 ~~~~eav~~g~i~n~~~~y~~~~~~~fl~~~G-i~~~~lrfrqh~~~e~AHYa~~~~D~e~~~~~---Gw~E~~G~a~R~ 321 (551)
T TIGR00389 246 SGIGEAVESGMIENETLGYFIARVKQFLLEIG-INPDKLRFRQHDKNEMAHYAKDCWDFEFLTPY---GWIECVGIADRG 321 (551)
T ss_pred ccHHHHHHhcccchHHHHHHHHHHHHHHHHhC-CCHHHeeecccCcHHHhhhccccEeEEEecCC---CcEEEEEecccc
Confidence 123334444 221 0000 0001110001112445544432 12 11 1 1
Q ss_pred ccccccc--cccceeeEEeC------------------------------------------------------------
Q 010413 255 SHCLGQN--FSKMFEIIFEN------------------------------------------------------------ 272 (511)
Q Consensus 255 ~~~lg~~--~s~~f~i~y~~------------------------------------------------------------ 272 (511)
.+.|..+ +|. -+++|.+
T Consensus 322 ~yDL~~H~~~s~-~~l~~~~~~~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (551)
T TIGR00389 322 DYDLTQHSKFSG-KSLSVFDKLDEPREVTKWEIEPNKKKFGPKFRKDAKKIESNLSEDDLEEREEELDKNEVELDKDLVE 400 (551)
T ss_pred ccChHHHHHhhC-CCeEEEeecCCCceeEEEEEecchhhhhhhhHhHHHHHHHhhcHHHHHHHHhhhhccceecchhhhh
Confidence 1111110 000 0111111
Q ss_pred -------CCCcee--eeeeeccccccceeeEEEEEeeCC--------CCcccCCcccceeEEEEeeccCccchhHHHHHH
Q 010413 273 -------EKGEKA--MAWQNSWAYTTRTIGVMVMVHGDD--------KGLVLPPRVASVQVIVVPVPYKDADTQGIFDAC 335 (511)
Q Consensus 273 -------~~g~~~--~v~~~~~Gi~eRli~~Lie~~~d~--------~G~~lP~~laP~qV~Iipi~~~~~~~~~~~~~a 335 (511)
..|++. +|...|+| ++|++++|+++..++ .++.||+++||+||+|+|+..+ ++...+|
T Consensus 401 ~~~~~~~~~~~~~~P~VIepS~G-IdRIi~ALle~~~~e~~~~~~~r~vL~lp~~lAP~kV~VIpl~~~----~el~~~A 475 (551)
T TIGR00389 401 IEMVTEVVHGEKYIPHVIEPSFG-IDRIIYALLEHSYQEEVLDGEEREVLRLPPHLAPIKVAVLPLVNK----EELKEIA 475 (551)
T ss_pred heeeeeccCCcEecceEEEcccC-HHHHHHHHHHhhCccccccccccceeccCCccCCceEEEEEecCc----HHHHHHH
Confidence 123333 45667999 599999998865441 1479999999999999999742 3577899
Q ss_pred HHHHHHHHHcCceeeecCCCCCCCCCCCCcccccCceeEeeeCcccccCCcEEEEEccCCCccccccchHHHHHHHH
Q 010413 336 TATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKEL 412 (511)
Q Consensus 336 ~~i~~~Lr~~Girv~~D~~~~~~lg~k~~~ae~~giP~~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~el~~~i~~~ 412 (511)
.+|++.||++|++|++|+++ ++|+++++|++.|+|++|+||++|+++++|+||+|++++|..++++++.+.+.++
T Consensus 476 ~eIa~~LR~~GI~VeiD~s~--sIGKq~rrADeiGiPf~IIIG~~EledgtVTIRdRdT~eQ~~I~ldeL~~~L~e~ 550 (551)
T TIGR00389 476 KEIFQALRKTGIRIKYDDSG--TIGKRYRRADEIGTPFCVTIDFETLEDETVTIRERDSMKQVRVKIKELPSYIKKL 550 (551)
T ss_pred HHHHHHHHHCCCEEEEECCC--CHHHHHHHHHHcCCCEEEEECCchhhCCEEEEEECCCCceEEeeHHHHHHHHHhh
Confidence 99999999999999999975 5999999999999999999999999999999999999999999999987776643
No 35
>PLN02320 seryl-tRNA synthetase
Probab=100.00 E-value=3.4e-41 Score=355.19 Aligned_cols=288 Identities=14% Similarity=0.127 Sum_probs=248.5
Q ss_pred CCCccccccceeecceecccCChhhhHHHhhhccceeeeee---eceeEE-eccchHH-HHHHHHHHHHHHHHhcceeee
Q 010413 16 GGKKKEVKKETGLGLSYKKDENFGEWYSEVVVNGEMIEYYD---ISGCYI-IRPWAMS-IWETMQKFFDAEIKKMKIQNC 90 (511)
Q Consensus 16 ~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~a~~~d~~~---~~G~~~-~~P~g~~-i~~~I~~~~~~~~~~~G~~ev 90 (511)
|+|+++ ..+|.+|.+...++....|. +|.++.+++|+.. ++|..+ |+|.+.. +.++|++++.+.+.+.||++|
T Consensus 178 G~de~~-~~~~~~G~~~~f~f~~rdH~-eLg~~L~Lfdf~~aakvsG~~f~~L~g~~a~Le~ALi~f~ld~~~~~Gy~eV 255 (502)
T PLN02320 178 GGEDSS-AVRKEVGSPREFSFPIKDHL-QLGKELDLFDFDAAAEVSGSKFYYLKNEAVLLEMALVNWTLSEVMKKGFTPL 255 (502)
T ss_pred CCCCCC-eEEEecCCCCCCCCCCcCHH-HHHHHcCCccccchhhcCCCeeEEeCCHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 455655 67899998633333322332 5677888888853 568877 4777555 668999999999999999999
Q ss_pred eeecccChhhhhhhhhcccCCCc-ceeeEeccCCCCCCCceeecCCCccccchhhhhhhhcCCCCccccccccceEeeee
Q 010413 91 YFPLFVSPTVLQKEKDHIEGFAP-EVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEF 169 (511)
Q Consensus 91 ~tP~l~~~~l~~~~sg~~~~f~~-emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~ 169 (511)
.||.|++.++|. .+||+..|.+ ++|.+. +++++|.||+|.++..++.+.+.+|++||+|++.+++|||+|+
T Consensus 256 ~tP~lv~~~l~~-~sG~~p~~e~~~~y~ie-------~ed~~Li~TaE~Pl~~~~~~~ils~~dLPlRy~~~s~cFR~EA 327 (502)
T PLN02320 256 TTPEIVRSSVVE-KCGFQPRGDNTQVYSID-------GSDQCLIGTAEIPVGGIHMDSILLESALPLKYVAFSHCFRTEA 327 (502)
T ss_pred ECCccchHHHHH-hcCCCcccccCceeEEC-------CCceEEeecccccccccccccccCHhhCCceeEEecccccccc
Confidence 999999999994 7999888877 788764 3679999999999999999999999999999999999999998
Q ss_pred c----CCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhhhccccccccccccccccCccceeeEEEeecC
Q 010413 170 S----NPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPN 245 (511)
Q Consensus 170 ~----~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~lg~ip~~~g~~~~~ek~~ga~y~~~ie~~~p~ 245 (511)
+ .++||+|+|||++.|+|+ +|+++|+++|+..|+++..++|+.|| +||++...+..|.+..|..++|||+|||+
T Consensus 328 gs~G~d~rGL~RvhQF~KvE~~i-f~~peqs~~e~e~ll~~~e~i~~~Lg-Lpyrvv~l~tgDLg~~a~kkyDiEvW~P~ 405 (502)
T PLN02320 328 GAAGAATRGLYRVHQFSKVEMFV-ICRPEESESFHEELIQIEEDLFTSLG-LHFKTLDMATADLGAPAYRKFDIEAWMPG 405 (502)
T ss_pred ccCCCcCCCceeeeeeecccEEE-EECHHHHHHHHHHHHHHHHHHHHHcC-CCeEEEEecCCccchhhhheEEEEEEecC
Confidence 7 367999999999999998 99999999999999999999999998 89988877778888899999999999999
Q ss_pred CCcccccccccccccccccceeeEEeCC--------CC-----ceeeeeee-cccc-ccceeeEEEEEeeCCCC-cccCC
Q 010413 246 TGRGIQGATSHCLGQNFSKMFEIIFENE--------KG-----EKAMAWQN-SWAY-TTRTIGVMVMVHGDDKG-LVLPP 309 (511)
Q Consensus 246 ~gr~lq~gt~~~lg~~~s~~f~i~y~~~--------~g-----~~~~v~~~-~~Gi-~eRli~~Lie~~~d~~G-~~lP~ 309 (511)
.+++.+++++.|+++++|+|++++|.+. +| +.+++|+. +.|+ +.|+|.+|+|+|++++| +.+|.
T Consensus 406 ~~~y~EvsS~SNc~DfQaRRl~iryr~~~~~~~~~~~~k~~~~~~~~vHTLNgTalAv~R~l~AILENyQ~~dGsi~IP~ 485 (502)
T PLN02320 406 LGRYGEISSASNCTDYQSRRLGIRYRPSEPPQTNPKKGKGSLGPTKFVHTLNATACAVPRMIVCLLENYQQEDGSVVIPE 485 (502)
T ss_pred CCcEEEEeeecchhhHhhhcccceeccccccccccccccccCCCcceeEecccchhHHHHHHHHHHHhCcCCCCcEECCh
Confidence 9999999999999999999999999863 34 35699994 7777 99999999999999999 88999
Q ss_pred ccccee
Q 010413 310 RVASVQ 315 (511)
Q Consensus 310 ~laP~q 315 (511)
.|.|+-
T Consensus 486 vLrpym 491 (502)
T PLN02320 486 PLRPFM 491 (502)
T ss_pred hhhhhc
Confidence 999874
No 36
>PLN02734 glycyl-tRNA synthetase
Probab=100.00 E-value=1.4e-40 Score=359.67 Aligned_cols=361 Identities=19% Similarity=0.249 Sum_probs=253.8
Q ss_pred hhhhHHHhhhccceee----e-eeeceeEEeccchHHHHHHHHHHHHHHH-HhcceeeeeeecccChhhhhhhhhcccCC
Q 010413 38 FGEWYSEVVVNGEMIE----Y-YDISGCYIIRPWAMSIWETMQKFFDAEI-KKMKIQNCYFPLFVSPTVLQKEKDHIEGF 111 (511)
Q Consensus 38 ~~~~~~~~~~~a~~~d----~-~~~~G~~~~~P~g~~i~~~I~~~~~~~~-~~~G~~ev~tP~l~~~~l~~~~sg~~~~f 111 (511)
|.+-+..++.+.+.+- + ..++|+|||.|.|+.|.++|++.||+.| ...++.+|++|+|.|..+| +.|||++.|
T Consensus 74 ~~~~l~~l~krRgF~~pSfeIYGGvaG~yDyGP~G~~lK~ni~~~Wr~~fv~~e~mleid~~~i~p~~V~-kASGHvd~F 152 (684)
T PLN02734 74 FRQAVVNTLERRLFYIPSFKIYGGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEENMLEVECPCVTPEVVL-KASGHVDKF 152 (684)
T ss_pred HHHHHHHHHHhcCCccccccccCCcccccccCcchHHHHHHHHHHHHHHHhccCCeeEeeccccCCHhHe-eecCCcccc
Confidence 4555556566666553 2 3589999999999999999999999998 4557889999999999999 689999999
Q ss_pred CcceeeEeccCC------------------------------------------------------------CC------
Q 010413 112 APEVAWVTKSGE------------------------------------------------------------SD------ 125 (511)
Q Consensus 112 ~~emy~~~~~g~------------------------------------------------------------~~------ 125 (511)
.+-|-.....|. .+
T Consensus 153 ~D~mv~~~~~~~~~RADhlie~~~~~~~~~~~~~~~~~~~e~~~~~~~~d~~~~~el~~~i~~~~ik~P~~g~~l~~~~~ 232 (684)
T PLN02734 153 TDLMVKDEKTGTCFRADHLLKDFCEEKLEKDLTISAEKAAELKDVLAVLDDLSAEELGAKIKEYGIKAPDTKNPLSDPYP 232 (684)
T ss_pred cceeeEcCCCCcEecchHHHHHHHHhhhccccccchHHHHHHHHHHHhhcCCCHHHHHHHHHHcCCCCCCCCCCCCCCee
Confidence 986632221110 00
Q ss_pred ------------CCCceeecCCCccccchhhhhhhhcCC-CCccccccccceEeeeecCCCCcccchhhhcccCcccccC
Q 010413 126 ------------LEVPIAIRPTSETVMYPYYSKWIRGHR-DLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFAT 192 (511)
Q Consensus 126 ------------l~~~l~LRPt~e~~~~~~~~~~~~s~r-~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~ 192 (511)
-+...+|||+..+++...|++....++ .||+-..|+|+.||+|.+|+.||+|+|||+|.|++. |++
T Consensus 233 FNLMF~T~IGp~~~~~~YLRPETAQGiFvnFk~l~~~~~~klPF~~AQIGk~FRNEIsPR~gl~R~REF~qaEiE~-Fv~ 311 (684)
T PLN02734 233 FNLMFQTSIGPSGLSVGYMRPETAQGIFVNFRDLYYYNGGKLPFAAAQIGQAFRNEISPRQGLLRVREFTLAEIEH-FVD 311 (684)
T ss_pred cccceeecccCcCCccceecccccchheeeHHHHHHhcCCCCCeeeeeccHhhhcccCcccceeeechhhhhhhhe-ecC
Confidence 024678999999999999999887655 799999999999999999999999999999999998 888
Q ss_pred hhhhH------------------------------------------HHHHHHHHHHHHHHhhhhcccc-cccc--cccc
Q 010413 193 KSEAD------------------------------------------DEVLQILELYRRIYEEFLAVPV-IKGK--KSEL 227 (511)
Q Consensus 193 ~e~a~------------------------------------------~e~~~~l~~~~~i~~~lg~ip~-~~g~--~~~~ 227 (511)
|++-. +.+.-.+.....++.++| |+- .+.. ....
T Consensus 312 P~~k~h~~f~~v~~~~l~l~~~~~q~~~~~~~~~t~~eAv~~gii~ne~l~Y~~~r~~~fl~~iG-i~~~~lRfRqh~~~ 390 (684)
T PLN02734 312 PEDKSHPKFSEVADLEFLLFPREEQLGGQKAKPMRLGEAVSKGIVNNETLGYFIGRTYLFLTKLG-IDKERLRFRQHLAN 390 (684)
T ss_pred cccccccchhhhhhhhhhcccHhhhhccCCcccccHHHHHHcCccchHHHHHHHHHHHHHHHHcC-CCHHHeeecccCcH
Confidence 76320 011122222333444455 221 0000 0000
Q ss_pred ccccCccc---eeeEEEee-----------------------------------------------c---CCCccc----
Q 010413 228 EKFAGGLY---TTTVEAFI-----------------------------------------------P---NTGRGI---- 250 (511)
Q Consensus 228 ek~~ga~y---~~~ie~~~-----------------------------------------------p---~~gr~l---- 250 (511)
|. |.| +.|+|..+ | .+|..+
T Consensus 391 Em---AHYA~dcwD~E~~~~~GWiE~vG~AdRs~yDL~~H~~~Sg~~L~~~~~~~ep~~~~~~~~~~~~~~~g~~fk~~~ 467 (684)
T PLN02734 391 EM---AHYAADCWDAEIECSYGWIECVGIADRSAYDLKAHSDKSKVPLVAHEKFAEPREVEVLVIVPNKKELGLAFKGDQ 467 (684)
T ss_pred HH---hhhhhccEeEEEecCCCcEEEEEeccccccchHHHHHhhCCCeEEEeccCCcceeeeEEEecchhhhhHHHHHHH
Confidence 00 001 01111111 1 011100
Q ss_pred ----------------------c-ccccc---c-cccccc---cceeeEEe--CCCCcee--eeeeeccccccceeeEEE
Q 010413 251 ----------------------Q-GATSH---C-LGQNFS---KMFEIIFE--NEKGEKA--MAWQNSWAYTTRTIGVMV 296 (511)
Q Consensus 251 ----------------------q-~gt~~---~-lg~~~s---~~f~i~y~--~~~g~~~--~v~~~~~Gi~eRli~~Li 296 (511)
+ .|.+. + +|..+. ..+.+... ...|++. +|.-.|||+ +|++++++
T Consensus 468 ~~v~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~iP~VIEPS~GI-gRIl~Ail 546 (684)
T PLN02734 468 KVVVEALEAMNEKEAMEMKAKLESKGEAEFYVCTLGKEVEIKKNMVSISKEKKKEHQRVFTPSVIEPSFGI-GRIIYCLF 546 (684)
T ss_pred HHHHHHHHhcchhHHHHHHHhhhhcCceeeeecccCcceeechhheeeeeeeeeecCceecCceEecCccH-HHHHHHHH
Confidence 0 00000 0 011110 01111111 1122222 466679995 99999999
Q ss_pred EEee-----CC--CCcccCCcccceeEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeeecCCCCCCCCCCCCccccc
Q 010413 297 MVHG-----DD--KGLVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMK 369 (511)
Q Consensus 297 e~~~-----d~--~G~~lP~~laP~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~~lg~k~~~ae~~ 369 (511)
|++. |+ .|+.||+|+||+||.|+|+..+ ++..++|.+|++.|+++|++|.+|+++ .++|+|+++|+++
T Consensus 547 E~s~~~~~~De~R~~L~~Pp~IAP~qVaIlPL~~~----ee~~~~A~eLa~~LR~~GIrVelDd~~-~SIGKRyrrADei 621 (684)
T PLN02734 547 EHSFYTRPGDEQLNVFRFPPLVAPIKCTVFPLVQN----QQLNAVAKVISKELTAAGISHKIDITG-TSIGKRYARTDEL 621 (684)
T ss_pred HHHhccccCCCcceEEecCcccCCcEEEEEEecCC----hHHHHHHHHHHHHHHhCCCEEEEECCC-CCHhHHHHHHHHc
Confidence 9866 56 7899999999999999999753 457899999999999999999999987 5999999999999
Q ss_pred CceeEeeeCcccccCCcEEEEEccCCCccccccchHHHHHHHHHH
Q 010413 370 GVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLD 414 (511)
Q Consensus 370 giP~~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~el~~~i~~~l~ 414 (511)
|+|++|+||. +++|+||+|++++|..|+++++++.|.++++
T Consensus 622 GIPf~ItIG~----dgtVTIRdRdsgeQ~rV~ldeLv~~I~~li~ 662 (684)
T PLN02734 622 GVPFAVTVDS----DGSVTIRERDSKDQVRVPVEEVASVVKDLTD 662 (684)
T ss_pred CCCEEEEECC----CCeEEEEECCCCceEEeeHHHHHHHHHHHHc
Confidence 9999999996 8999999999999999999999877765554
No 37
>PLN02530 histidine-tRNA ligase
Probab=100.00 E-value=8.2e-41 Score=359.52 Aligned_cols=328 Identities=16% Similarity=0.193 Sum_probs=260.9
Q ss_pred ceeeeeeeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCc
Q 010413 50 EMIEYYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVP 129 (511)
Q Consensus 50 ~~~d~~~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~ 129 (511)
.++++..++|++||+|.++.+++.|++.+++.++++||++|.||+|++.++|.+..|. ...++||.|.|.+ ++.
T Consensus 66 ~~~~~~~p~G~~D~lp~~~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g~--~~~~~~y~f~D~~----g~~ 139 (487)
T PLN02530 66 PKIDVNPPKGTRDFPPEDMRLRNWLFDHFREVSRLFGFEEVDAPVLESEELYIRKAGE--EITDQLYNFEDKG----GRR 139 (487)
T ss_pred cccccCCCCCcCcCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHhccccCc--ccccceEEEECCC----CCE
Confidence 3566778999999999999999999999999999999999999999999999766663 4678999999987 589
Q ss_pred eeecCCCccccchhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHH
Q 010413 130 IAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRR 209 (511)
Q Consensus 130 l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~ 209 (511)
++|||+.|++++++++....+. ++|+|+||+|+|||+| ++++| |+|||+|.++++++.+...+|+|++.++ .+
T Consensus 140 l~LRpD~T~~iaR~~~~~~~~~-~~P~r~~y~g~vfR~e-~~q~g--r~REf~Q~giEiiG~~~~~aDaEvi~l~---~~ 212 (487)
T PLN02530 140 VALRPELTPSLARLVLQKGKSL-SLPLKWFAIGQCWRYE-RMTRG--RRREHYQWNMDIIGVPGVEAEAELLAAI---VT 212 (487)
T ss_pred EecCCCCcHHHHHHHHhccccc-CCCeEEEEEcCEEcCc-CCCCC--CccceEEcCeeEeCCCCcchhHHHHHHH---HH
Confidence 9999999999999998876554 6999999999999999 67999 9999999999999999989999988776 67
Q ss_pred HHhhhhccc---cc--cccc------------------------ccccc----------------------c--------
Q 010413 210 IYEEFLAVP---VI--KGKK------------------------SELEK----------------------F-------- 230 (511)
Q Consensus 210 i~~~lg~ip---~~--~g~~------------------------~~~ek----------------------~-------- 230 (511)
+|+.+| ++ +. ++.+ ...++ +
T Consensus 213 ~l~~lg-l~~~~~~i~i~~~~i~~~~l~~~~~~~~~~~~v~~~~d~l~k~~~~~l~~~L~~~~~~~~~~~~l~~l~~~~~ 291 (487)
T PLN02530 213 FFKRVG-ITSSDVGIKVSSRKVLQAVLKSYGIPEESFAPVCVIVDKLEKLPREEIEKELDTLGVSEEAIEGILDVLSLKS 291 (487)
T ss_pred HHHHcC-CCCCceEEEEcCHHHHHHHHHHcCCchhhHHHHHHHHHhhhhccHHHHHHHHHHcCCCHHHHHHHHHHHhccC
Confidence 888887 32 21 1110 00000 0
Q ss_pred -------cC----cc----------ceeeEE--Eee-cCCCcccc--ccccccc----ccccccceeeEEeCC----CCc
Q 010413 231 -------AG----GL----------YTTTVE--AFI-PNTGRGIQ--GATSHCL----GQNFSKMFEIIFENE----KGE 276 (511)
Q Consensus 231 -------~g----a~----------y~~~ie--~~~-p~~gr~lq--~gt~~~l----g~~~s~~f~i~y~~~----~g~ 276 (511)
.+ +. ....++ ..+ |++.|+++ +|++|+. |...+..-|.||++- .|+
T Consensus 292 ~~~l~~~~~~~~~~l~~L~~l~~~l~~~g~~~~i~~Dl~lvrgldYYTGivFe~~~~~~~~~~I~gGGRYD~Li~~fgg~ 371 (487)
T PLN02530 292 LDDLEALLGADSEAVADLKQLFSLAEAYGYQDWLVFDASVVRGLAYYTGIVFEGFDRAGKLRAICGGGRYDRLLSTFGGE 371 (487)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHcCCCccEEEecccccCccccCceEEEEEecCCCcceeeecccHHHHHHHhCCC
Confidence 00 00 001111 112 67789988 6888863 223345667888753 234
Q ss_pred eeeeeeeccccccceeeEEEEEeeCCCCcccCCcccceeEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeeecCCCC
Q 010413 277 KAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRDN 356 (511)
Q Consensus 277 ~~~v~~~~~Gi~eRli~~Lie~~~d~~G~~lP~~laP~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~ 356 (511)
..|+.+.++| ++|++.+|.+ .| .+|.|.+|.||+|+|++ ++...+|.++++.||++|++|++|..+
T Consensus 372 ~~pAvGFa~g-~~~l~~~l~~-----~g-~~p~~~~~~dVlVi~~~------~~~~~~A~~ia~~LR~~Gi~vevd~~~- 437 (487)
T PLN02530 372 DTPACGFGFG-DAVIVELLKE-----KG-LLPELPHQVDDVVFALD------EDLQGAAAGVASRLREKGRSVDLVLEP- 437 (487)
T ss_pred CCCeeEEEEh-HHHHHHHHHh-----cC-CCCCCCCCCcEEEEEcC------hHHHHHHHHHHHHHHHCCCeEEEecCC-
Confidence 4466666666 6888765533 13 47888899999999997 356789999999999999999999987
Q ss_pred CCCCCCCCcccccCceeEeeeCcccccCCcEEEEEccCCCccccccchH
Q 010413 357 YSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSL 405 (511)
Q Consensus 357 ~~lg~k~~~ae~~giP~~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~el 405 (511)
.++++++++|++.|+|++|+||++|+++++|+||++.++++..|++++|
T Consensus 438 ~~l~k~ik~A~k~g~~~iviiG~~E~~~~~V~vK~l~sgeq~~v~~~el 486 (487)
T PLN02530 438 KKLKWVFKHAERIGAKRLVLVGASEWERGMVRVKDLSSGEQTEVKLDEL 486 (487)
T ss_pred CCHHHHHHHHHHCCCCEEEEEchhHHhCCeEEEEECCCCcceEechHHc
Confidence 5899999999999999999999999999999999999999999988764
No 38
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-39 Score=334.98 Aligned_cols=349 Identities=21% Similarity=0.297 Sum_probs=253.6
Q ss_pred eeceeEEeccchHHHHHHHHHHHHHHHHh--cceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCC----------
Q 010413 56 DISGCYIIRPWAMSIWETMQKFFDAEIKK--MKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGE---------- 123 (511)
Q Consensus 56 ~~~G~~~~~P~g~~i~~~I~~~~~~~~~~--~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~---------- 123 (511)
.++|+|||.|.|..|.++|++.|++.|-. -++.+|.||++.|.++| +.|||+++|.+-|-..+++|.
T Consensus 28 G~~GfyDYGPlG~~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p~~V~-kASGHvd~FsDplv~c~~c~~~yRADHLiEe 106 (558)
T COG0423 28 GLAGFYDYGPLGVELKNNIKEAWRKSFVTEREDVVEIDTPIILPEEVW-KASGHVDKFSDPLVECKKCGERYRADHLIEE 106 (558)
T ss_pred CcccccccCCccHHHHHHHHHHHHHHHeeccCCeEEecccccCcHHHh-hhcCcccccccceeeccccchhhhhhHHHHH
Confidence 58999999999999999999999999943 68999999999999999 689999999987754443220
Q ss_pred ------------------------------CC------------------CCCceeecCCCccccchhhhhhhhcCC-CC
Q 010413 124 ------------------------------SD------------------LEVPIAIRPTSETVMYPYYSKWIRGHR-DL 154 (511)
Q Consensus 124 ------------------------------~~------------------l~~~l~LRPt~e~~~~~~~~~~~~s~r-~L 154 (511)
.+ -+...+|||+..+++...|++...+.| .|
T Consensus 107 ~l~~~~~~~~~~~e~~~ii~~~~ir~p~~g~~l~~v~~FNLMF~T~IGp~~~~~~YLRPETAQGiFvnFk~l~~~~r~kl 186 (558)
T COG0423 107 YLGKDGHGNMSPEELTEIIREYDIRCPECGGELNEVREFNLMFKTTIGPVEDSLGYLRPETAQGIFVNFKNLLEFARNKL 186 (558)
T ss_pred HhhhcccccCCHHHHHHHHHHcCCcCCCcCCccCCcceeeeEEEeeecCCCCcceeecccccchhhhhhHHHHHHhccCC
Confidence 00 135789999999999999999887654 79
Q ss_pred ccccccccceEeeeecCCCCcccchhhhcccCcccccChhh-------------------h-HHH---------------
Q 010413 155 PLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSE-------------------A-DDE--------------- 199 (511)
Q Consensus 155 Plkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~-------------------a-~~e--------------- 199 (511)
|+-+.|+|+.||+|.+|..||+|+|||+|.|++. |++|++ . ..+
T Consensus 187 PFgiaQIGKsfRNEISPr~gl~R~REF~QaEiE~-Fv~P~~k~~p~f~~v~~~~l~l~~~~~q~~~~~~EAv~~g~~~n~ 265 (558)
T COG0423 187 PFGIAQIGKSFRNEISPRNGLFRTREFEQAEIEF-FVDPEEKEHPKFNEVKDEKLPLLPREAQEEGTEEEAVEEGIVENE 265 (558)
T ss_pred CeEEEeechhhccccCcccceeehhhhhhhheee-EECCCcccCcchhhhhhhhcccccHHHhhhhhhhhhhhcceeech
Confidence 9999999999999999999999999999999998 777766 2 122
Q ss_pred -HHHHHHHHHHHHhhhhcccccc---ccccccccccCccceeeEEEeecCCCccccc-c----cccccccc--cc-----
Q 010413 200 -VLQILELYRRIYEEFLAVPVIK---GKKSELEKFAGGLYTTTVEAFIPNTGRGIQG-A----TSHCLGQN--FS----- 263 (511)
Q Consensus 200 -~~~~l~~~~~i~~~lg~ip~~~---g~~~~~ek~~ga~y~~~ie~~~p~~gr~lq~-g----t~~~lg~~--~s----- 263 (511)
+.-.+.....++.++| |+-.. -.....|...=|.-+.++|..+|..| ..++ | |.+.|... +|
T Consensus 266 ~~~y~~~~~~~fl~~lG-I~~e~lRfrqh~~~E~AHYa~~twD~E~~~~~~g-WiE~~GiAdRtdYDL~~H~k~s~~~l~ 343 (558)
T COG0423 266 TLAYFIARTKFFLEDLG-IDPEKLRFRQHLPEELAHYSKDTWDAEYKFPFGG-WIELVGIADRTDYDLSRHSKFSGEDLT 343 (558)
T ss_pred hHHHHHHHHHHHHHHcC-CCHHHhhhhhcChHHHhhhhhcceeEEEecCCCc-eEEEEEeecccccchhhhhhhccccce
Confidence 1122334455555666 44211 11111111000111233333333111 0110 0 00101000 00
Q ss_pred ---------------cceeeEEeC-----------------------------------------CCCcee--eeeeecc
Q 010413 264 ---------------KMFEIIFEN-----------------------------------------EKGEKA--MAWQNSW 285 (511)
Q Consensus 264 ---------------~~f~i~y~~-----------------------------------------~~g~~~--~v~~~~~ 285 (511)
...+.+|.+ ..|++. +|.-.|+
T Consensus 344 v~~~~~ePk~v~~~~~~~~~~~~gp~~k~~a~~v~~~~se~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~iP~VIEPSf 423 (558)
T COG0423 344 VFREYDEPKEVERWHSKVDLKFLGPEFKKDAKKVAEALSELEELEKELNGYEVSKDLVIIEEVEKVTGEKYIPHVIEPSF 423 (558)
T ss_pred eeeccCCcceeeeeecccchhhcChhhhhhHHHHhhhhhhhhhhhhccCccccccchhheeeeeeccCceecCceeccCC
Confidence 000011111 122332 4556799
Q ss_pred ccccceeeEEEEEeeCC-C------CcccCCcccceeEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeeecCCCCCC
Q 010413 286 AYTTRTIGVMVMVHGDD-K------GLVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRDNYS 358 (511)
Q Consensus 286 Gi~eRli~~Lie~~~d~-~------G~~lP~~laP~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~~ 358 (511)
| ++|++.+++++--+. . -+.|||++||++|+|+|+..+ +++.+.|.+|.+.|++.|+.|.+|++. +
T Consensus 424 G-idRi~y~~l~~ay~~ee~~e~R~vLrl~p~lAPikvaVlPL~~k----~~l~~~a~~i~~~L~~~~~~v~yDdsG--s 496 (558)
T COG0423 424 G-IDRIFYALLEHAYTEEEVEEKRIVLRLPPDLAPIKVAVLPLVKK----DELVEIAKEIFEKLRELGFNVDYDDSG--S 496 (558)
T ss_pred C-chHHHHHHHHHhhcccccccceeEEecCcccCceEEEEEeeecc----cchhHHHHHHHHHHHhcCceEEecCCC--c
Confidence 9 599999888763321 1 167999999999999999976 468899999999999999999999985 9
Q ss_pred CCCCCCcccccCceeEeeeCcccccCCcEEEEEccCCCccccccchHHHHHHHHHHH
Q 010413 359 PGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLDE 415 (511)
Q Consensus 359 lg~k~~~ae~~giP~~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~el~~~i~~~l~~ 415 (511)
+|++++.++.+|+||+|.|..+.+++++||||+|||.+|..|++++|+..+.+++..
T Consensus 497 IGrRYrR~DEIGtPfcVTvD~eTleD~tVTiReRDs~~QvRv~i~el~~~l~~~~~~ 553 (558)
T COG0423 497 IGRRYRRQDEIGTPFCVTVDFETLEDNTVTIRERDSMEQVRVKIEELADYLRELIKG 553 (558)
T ss_pred HhhhhhhccccCCceEEEecCCcccCCcEEEeecCchheeeeeHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999998887753
No 39
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.6e-39 Score=344.06 Aligned_cols=328 Identities=19% Similarity=0.203 Sum_probs=254.6
Q ss_pred eeeeeeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhccc-CCCcceeeEeccCCCCCCCce
Q 010413 52 IEYYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIE-GFAPEVAWVTKSGESDLEVPI 130 (511)
Q Consensus 52 ~d~~~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~-~f~~emy~~~~~g~~~l~~~l 130 (511)
+....++|+++|+|.++.+++.|++.+++.+.++||++|.||+|++.++|.+.+|+.. .+.++||.|.|.+ ++.+
T Consensus 2 ~~~~~p~G~~d~~p~~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~d~~----g~~l 77 (412)
T PRK00037 2 MKIQAPRGTRDILPEESAKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQDKG----GRSL 77 (412)
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEEEEcCC----CCEE
Confidence 3456799999999999999999999999999999999999999999999976567653 4578999999875 5899
Q ss_pred eecCCCccccchhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHH
Q 010413 131 AIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRI 210 (511)
Q Consensus 131 ~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i 210 (511)
+|||+.|++++++++... .+|+|+||+|+|||+| +++.| |.|||+|.++|+++.+.+.+++|++.++ .++
T Consensus 78 ~LRpd~T~~~ar~~~~~~----~~p~r~~~~g~vfR~e-~~~~g--r~ref~Q~g~ei~g~~~~~~d~E~i~~~---~~~ 147 (412)
T PRK00037 78 TLRPEGTAPVVRAVIEHK----LQPFKLYYIGPMFRYE-RPQKG--RYRQFHQFGVEVIGSDSPLADAEVIALA---ADI 147 (412)
T ss_pred EecCCCcHHHHHHHHhCC----CCCeEEEEEcCccccC-CCCCC--cccceEEcCeeeeCCCCcchhHHHHHHH---HHH
Confidence 999999999999888642 2999999999999999 45678 9999999999998888888999976654 788
Q ss_pred Hhhhhccc-ccc------------cc---------c--cc--------c--------ccc-cC--cc-------------
Q 010413 211 YEEFLAVP-VIK------------GK---------K--SE--------L--------EKF-AG--GL------------- 234 (511)
Q Consensus 211 ~~~lg~ip-~~~------------g~---------~--~~--------~--------ek~-~g--a~------------- 234 (511)
++.+| ++ +.+ +. + +. . ++. .+ ..
T Consensus 148 l~~lg-~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (412)
T PRK00037 148 LKALG-LKGLKLLINSLGDFEIRANYRKALVGFLEKGLDELDEDSKRRLETNPLRILDKKDKEDQELLKDAPKLLDYLDE 226 (412)
T ss_pred HHHcC-CCceeeeeccCCCHHHhHHHHHHHHHHHHhCchhhchHHHHHHhhCchhhhcccchhhHHHHhcchHHHHHhhH
Confidence 88887 32 100 00 0 00 0 000 00 00
Q ss_pred -------------ceeeEEEee-cCCCcccc--ccccccc-----ccccccceeeEEeCC----CCceeeeeeecccccc
Q 010413 235 -------------YTTTVEAFI-PNTGRGIQ--GATSHCL-----GQNFSKMFEIIFENE----KGEKAMAWQNSWAYTT 289 (511)
Q Consensus 235 -------------y~~~ie~~~-p~~gr~lq--~gt~~~l-----g~~~s~~f~i~y~~~----~g~~~~v~~~~~Gi~e 289 (511)
....+...+ |++.|+++ +|.+|+. |...+..-+.+|++. +|+..|+.+.++| ++
T Consensus 227 ~~~~~l~~l~~~l~~~~~~i~~Dl~~~r~l~YYtG~vFe~~~~~~g~~~~i~~GGRYD~L~~~f~~~~~pavGfs~~-le 305 (412)
T PRK00037 227 ESKEHFEELKELLDALGIPYVIDPRLVRGLDYYTGTVFEFVTDDLGAQGTVCGGGRYDGLVEQFGGPPTPAVGFAIG-VE 305 (412)
T ss_pred HHHHHHHHHHHHHHHcCCCEEECCCcccChhhccceEEEEEECCCCccceeeeccchhHHHHHhCCCCCceEEEEEc-HH
Confidence 000111222 56677777 5777753 111244556778642 2344466666666 69
Q ss_pred ceeeEEEEEeeCCCCcccCCcccceeEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeeecCCCCCCCCCCCCccccc
Q 010413 290 RTIGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMK 369 (511)
Q Consensus 290 Rli~~Lie~~~d~~G~~lP~~laP~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~~lg~k~~~ae~~ 369 (511)
|++.+|.+++ . +|.||+|+|++ ++..++|.++++.||++|++|++|..+ .++++++++|+++
T Consensus 306 ~l~~~l~~~~-----~------~~~~vlI~~~~------~~~~~~a~~i~~~Lr~~Gi~v~i~~~~-~~~~~~~~~a~~~ 367 (412)
T PRK00037 306 RLLLLLEELG-----E------EPVDVYVVPLG------EDAELAALKLAEKLRAAGIRVELDYGG-RKLKKQFKYADKS 367 (412)
T ss_pred HHHHHHHhcC-----C------CCCCEEEEEeC------hHHHHHHHHHHHHHHHCCCeEEEeCCC-CCHHHHHHHHHHc
Confidence 9998877642 1 78899999987 345678999999999999999999876 5899999999999
Q ss_pred CceeEeeeCcccccCCcEEEEEccCCCccccccchHHHHHHHHH
Q 010413 370 GVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELL 413 (511)
Q Consensus 370 giP~~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~el~~~i~~~l 413 (511)
|+|++|+||++|+++++|+||+++++++..|+++++++.|++.+
T Consensus 368 gi~~~viig~~e~~~~~v~vr~~~~~~~~~v~~~el~~~i~~~~ 411 (412)
T PRK00037 368 GARFVLILGEDELANGTVTVKDLRTGEQQTVPLDELVEALKELL 411 (412)
T ss_pred CCCEEEEEChhHHhCCeEEEEECCCCceEEeeHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999988887654
No 40
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-38 Score=328.70 Aligned_cols=288 Identities=14% Similarity=0.159 Sum_probs=259.1
Q ss_pred CCCCccccccceeecceecc--cCC-hhhhHHHhhhccceeeee-----eeceeEEeccchHHHHHHHHHHHHHHHHhcc
Q 010413 15 GGGKKKEVKKETGLGLSYKK--DEN-FGEWYSEVVVNGEMIEYY-----DISGCYIIRPWAMSIWETMQKFFDAEIKKMK 86 (511)
Q Consensus 15 ~~~~~~~~~~~r~~g~~~~~--~~~-~~~~~~~~~~~a~~~d~~-----~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G 86 (511)
-|.|+.+...+|.+|.+... +.. .++| ++.+..+++|+. ++++++++.+.++++.++|.+++-+.+.++|
T Consensus 115 vg~de~~n~~vr~~g~~~~~~~~f~pk~H~--~lge~l~~~Df~~aaKvsGsrf~~~~~~~a~L~rAL~~f~ld~~~~~G 192 (429)
T COG0172 115 VGKDEDDNVEVRRWGEPPVFVFDFEPKDHV--ELGEKLGLLDFERAAKVSGSRFYFYKGKGARLERALIQFMLDLHTKHG 192 (429)
T ss_pred cCCCcccceEEEEEecCccccccCCcchHH--HHhhhcCcchhhhhcccCCCceEEEcCHHHHHHHHHHHHHHHHHHHcC
Confidence 35588888999999997322 333 4555 557888888884 5788999999999999999999999999999
Q ss_pred eeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhhhhhcCCCCccccccccceEe
Q 010413 87 IQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVR 166 (511)
Q Consensus 87 ~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR 166 (511)
|+++.+|.|++.+.+ ..+|++++|.++||.+.+ ..++|.||+|.++++++++.+....+||+++..+++|||
T Consensus 193 f~e~~~P~lv~~e~m-~gtgqlpkf~e~~y~v~~-------~~~~LipTaEvpl~~l~~~Eil~~~~LP~k~~~~S~cFR 264 (429)
T COG0172 193 FTEVLPPYLVNLESM-FGTGQLPKFEEDLYKVED-------PDLYLIPTAEVPLTNLHRDEILDEEDLPIKYTAYSPCFR 264 (429)
T ss_pred ceEeeCceeecHHHh-hccCCCCCCcccceEecC-------CCEEEEecchhhhHHhhcccccccccCCeeeEEEChhhh
Confidence 999999999999999 479999999999999985 479999999999999999999988899999999999999
Q ss_pred eeecC----CCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhhhccccccccccccccccCccceeeEEEe
Q 010413 167 WEFSN----PTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTVEAF 242 (511)
Q Consensus 167 ~E~~~----~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~lg~ip~~~g~~~~~ek~~ga~y~~~ie~~ 242 (511)
+|+.. ++||+|+|||++.|... +|+|+++..+...|+...++|++.|+ +||++..-...|.+.+|..++++|+|
T Consensus 265 ~EAGs~GrdtrGliRvHQF~KVE~v~-~~~Pe~S~~~~E~m~~~ae~il~~Le-LPyRvv~lctGDlgf~a~kkYDlEvW 342 (429)
T COG0172 265 SEAGSAGKDTRGLIRVHQFDKVELVV-ITKPEESEEELEEMLGNAEEVLQELE-LPYRVVNLCTGDLGFSAAKKYDLEVW 342 (429)
T ss_pred cccccccccccceeeeeeeeeEEEEE-EeCcchhHHHHHHHHHHHHHHHHHhC-CCceEeeeccCCcCCcccCceeEEEE
Confidence 99864 88999999999999998 99999999999999999999999998 99998876667888899999999999
Q ss_pred ecCCCcccccccccccccccccceeeEEeC-CCCceeeeee-ecccc-ccceeeEEEEEeeCCCC-cccCCcccce
Q 010413 243 IPNTGRGIQGATSHCLGQNFSKMFEIIFEN-EKGEKAMAWQ-NSWAY-TTRTIGVMVMVHGDDKG-LVLPPRVASV 314 (511)
Q Consensus 243 ~p~~gr~lq~gt~~~lg~~~s~~f~i~y~~-~~g~~~~v~~-~~~Gi-~eRli~~Lie~~~d~~G-~~lP~~laP~ 314 (511)
+|+.+++-+++++.|+++.++++++++|.+ .+|+.+++|+ ++.|+ +.|++.+++|+|++++| +.+|..|-|+
T Consensus 343 lP~q~~yrEisScSnc~DfQaRR~~~Ryr~~~~~k~~~vhTLNGsglA~~R~l~AilENyq~~dG~v~IPevL~~y 418 (429)
T COG0172 343 LPGQNKYREISSCSNCTDFQARRLNIRYRDKEEGKREFVHTLNGSGLAVGRTLVAILENYQQEDGSVKIPEVLRPY 418 (429)
T ss_pred ecCCCCceeeeeeeccccHHHHHHhcccccccCCCcEEEEeccchHHHHHHHHHHHHHcccCCCCCeeccHHHHhh
Confidence 999889999999999999999999999976 5777789999 48888 99999999999999888 6788888775
No 41
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.5e-36 Score=319.19 Aligned_cols=322 Identities=14% Similarity=0.143 Sum_probs=247.6
Q ss_pred eeeeeeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCcee
Q 010413 52 IEYYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIA 131 (511)
Q Consensus 52 ~d~~~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~ 131 (511)
+++.+++|++||+|..+.+++.|++.+++.|+++||++|.||+|++.++|....|..+...++||.|+|.+ ++.++
T Consensus 2 ~~~~~p~G~~d~~p~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~~----g~~l~ 77 (423)
T PRK12420 2 MEMRNVKGTKDYLPEEQVLRNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQG----KRDLA 77 (423)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEEEecCC----Cceec
Confidence 45568999999999999999999999999999999999999999999999654455556678999999987 58999
Q ss_pred ecCCCccccchhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHH
Q 010413 132 IRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIY 211 (511)
Q Consensus 132 LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~ 211 (511)
|||+.|++++++++... ...+|+|+||+|+|||+| +++.| |.|||+|.++++++.+...+|+|++.++ .+++
T Consensus 78 LRpD~T~~iaR~va~~~--~~~~p~r~~y~g~vfR~~-~~~~g--r~rE~~Q~g~EiiG~~~~~adaEvi~la---~~~l 149 (423)
T PRK12420 78 LRYDLTIPFAKVVAMNP--NIRLPFKRYEIGKVFRDG-PIKQG--RFREFIQCDVDIVGVESVMAEAELMSMA---FELF 149 (423)
T ss_pred ccccccHHHHHHHHhCc--CCCCCeeEEEEcceECCC-CCCCC--ccceeEECCeeeECCCCCcccHHHHHHH---HHHH
Confidence 99999999999988752 246899999999999999 56889 9999999999999999999999998776 6788
Q ss_pred hhhhcccccc--c-------------ccc-----------ccc-------------------------ccc--Cc-----
Q 010413 212 EEFLAVPVIK--G-------------KKS-----------ELE-------------------------KFA--GG----- 233 (511)
Q Consensus 212 ~~lg~ip~~~--g-------------~~~-----------~~e-------------------------k~~--ga----- 233 (511)
+.+| +.+.+ | ... ..+ .+. +.
T Consensus 150 ~~lg-~~~~i~l~~~~l~~~il~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~l~~~~l~~~~~~~l~~l~~~~~~~~~~ 228 (423)
T PRK12420 150 RRLN-LEVTIQYNNRKLLNGILQAIGIPTELTSDVILSLDKIEKIGIDGVRKDLLERGISEEMADTICNTVLSCLQLSIA 228 (423)
T ss_pred HHCC-CCEEEEEcCHHHHHHHHHHcCCChhhhhchhhheechhhcCHHHHHHHHHHcCCCHHHHHHHHHHHhccChhhHH
Confidence 8776 33311 0 000 000 000 00
Q ss_pred --------------------------cceeeEEEee-cCCCcccc--ccccccc---c--cccccceeeEEeCC----CC
Q 010413 234 --------------------------LYTTTVEAFI-PNTGRGIQ--GATSHCL---G--QNFSKMFEIIFENE----KG 275 (511)
Q Consensus 234 --------------------------~y~~~ie~~~-p~~gr~lq--~gt~~~l---g--~~~s~~f~i~y~~~----~g 275 (511)
.++..-...+ |++.|+++ +|.+|+. + ...+-.-|.+|++- .|
T Consensus 229 ~~~~~~~~~~~~~~l~~l~~l~~~l~~~g~~~~i~~Dl~~vr~l~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~f~~ 308 (423)
T PRK12420 229 DFKEAFNNPLVAEGVNELQQLQQYLIALGINENCIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGGRYDNIIGAFRG 308 (423)
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHHhCCCCcEEEeccccCCCcccceeEEEEEecCCCccccccCCccHHHHHHHhCC
Confidence 0111100112 56678887 6888764 1 12345667888742 12
Q ss_pred --ceeeeeeeccccccceeeEEEEEeeCCCCcccCCcccceeEEEEeeccCccchhHHHHHHHHHHHHHHH-cCceeeec
Q 010413 276 --EKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVETLCE-AGICANMD 352 (511)
Q Consensus 276 --~~~~v~~~~~Gi~eRli~~Lie~~~d~~G~~lP~~laP~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~-~Girv~~D 352 (511)
...++.+.++| ++|++.+|... + . ++ .|.||+|+|++. . ..|.++++.||+ +|++|++|
T Consensus 309 ~~~~~pAvGfa~~-~~~l~~~l~~~-----~-~-~~--~~~dvlI~~~~~------~--~~a~~ia~~Lr~~~Gi~ve~~ 370 (423)
T PRK12420 309 DDMNYPTVGISFG-LDVIYTALSQK-----E-T-IS--STADVFIIPLGT------E--LQCLQIAQQLRSTTGLKVELE 370 (423)
T ss_pred CCCCCCceeEEEc-HHHHHHHHHhc-----C-C-CC--CCceEEEEEcCC------H--HHHHHHHHHHHhhcCCeEEEe
Confidence 22355555555 69998766432 1 1 22 578999999863 1 358899999999 99999999
Q ss_pred CCCCCCCCCCCCcccccCceeEeeeCcccccCCcEEEEEccCCCccccccchH
Q 010413 353 SRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSL 405 (511)
Q Consensus 353 ~~~~~~lg~k~~~ae~~giP~~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~el 405 (511)
.++ .++++++++|.+.|+|++++||++|+++++|+||++.++++..|+++++
T Consensus 371 ~~~-~~l~~~i~~A~~~g~~~iviig~~e~~~~~v~vr~~~~~~~~~v~~~~~ 422 (423)
T PRK12420 371 LAG-RKLKKALNYANKENIPYVLIIGEEEVSTGTVMLRNMKEGSEVKVPLSSL 422 (423)
T ss_pred cCC-cCHHHHHHHHHHcCCCEEEEEChhHHhcCeEEEEECCCCceeeeeHHHc
Confidence 987 5999999999999999999999999999999999999999999988765
No 42
>PLN02972 Histidyl-tRNA synthetase
Probab=100.00 E-value=1.3e-35 Score=324.97 Aligned_cols=331 Identities=18% Similarity=0.161 Sum_probs=251.4
Q ss_pred eeeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecC
Q 010413 55 YDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRP 134 (511)
Q Consensus 55 ~~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRP 134 (511)
..++|++||+|..+.+|++|++.+++.|+++||++|.||+|++.++|....|.- .++||.|.|.+ ++.++|||
T Consensus 328 k~PkGtrD~lP~e~~~re~I~~~L~~vFk~hGy~eI~TPvfE~~Ell~~k~Ged---~k~mY~f~D~g----Gr~LaLRP 400 (763)
T PLN02972 328 KIPKGTRDFAKEQMAIREKAFSIITSVFKRHGATALDTPVFELRETLMGKYGED---SKLIYDLADQG----GELCSLRY 400 (763)
T ss_pred CCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCEEccCCcccchHHhhcccCcc---hhheEEEECCC----CCEEEeCC
Confidence 569999999999999999999999999999999999999999999996554532 36899999987 48999999
Q ss_pred CCccccchhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCccccc-ChhhhHHHHHHHHHHHHHHHhh
Q 010413 135 TSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFA-TKSEADDEVLQILELYRRIYEE 213 (511)
Q Consensus 135 t~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~-~~e~a~~e~~~~l~~~~~i~~~ 213 (511)
+.|++++++++.+. ..|+|+||+|+|||+| +|++| |+|||+|+++++++. ++..+|+|++.++ .++++.
T Consensus 401 DlTvPiAR~vA~n~----~~p~KrYyiG~VFR~e-~pqkG--R~REF~Q~G~EIIG~~~~~~aDAEVI~La---~E~L~~ 470 (763)
T PLN02972 401 DLTVPFARYVAMNG----ITSFKRYQIAKVYRRD-NPSKG--RYREFYQCDFDIAGVYEPMGPDFEIIKVL---TELLDE 470 (763)
T ss_pred CChHHHHHHHHhCC----CCcceEEEeccEEecC-CCCCC--CCccceEEeEEEEcCCCcchhhHHHHHHH---HHHHHh
Confidence 99999999988742 3489999999999999 57999 999999999999997 4556899988776 777877
Q ss_pred hhccccc--c-------------cc----------------ccccc---------------------c---ccCc-----
Q 010413 214 FLAVPVI--K-------------GK----------------KSELE---------------------K---FAGG----- 233 (511)
Q Consensus 214 lg~ip~~--~-------------g~----------------~~~~e---------------------k---~~ga----- 233 (511)
+|.-.+. + +. +..++ . ..|.
T Consensus 471 LGi~df~I~INh~~iL~~ILe~lgi~~e~~~~v~~aIdkldk~~le~vk~eL~~~~gLs~e~~~~L~~L~~L~G~~~evL 550 (763)
T PLN02972 471 LDIGTYEVKLNHRKLLDGMLEICGVPPEKFRTICSSIDKLDKQSFEQVKKEMVEEKGLSNETADKIGNFVKERGPPLELL 550 (763)
T ss_pred CCCCceEEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhhcCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 7621111 0 00 00000 0 0010
Q ss_pred ---------cc--------------------eeeE-E-Eee-cCCCcccc--ccccccc---ccc-cccceeeEEeCC--
Q 010413 234 ---------LY--------------------TTTV-E-AFI-PNTGRGIQ--GATSHCL---GQN-FSKMFEIIFENE-- 273 (511)
Q Consensus 234 ---------~y--------------------~~~i-e-~~~-p~~gr~lq--~gt~~~l---g~~-~s~~f~i~y~~~-- 273 (511)
.. ...+ + ..+ |++.|+++ +|++|+. +.. -+..-|.||++.
T Consensus 551 d~L~~~~~~l~~~~~~~~aL~eL~~L~~~L~~~gv~~~I~fDlsLvRGLDYYTGiVFE~~~~g~~~gsIagGGRYD~Lv~ 630 (763)
T PLN02972 551 SKLRQEGSEFLGNASSRAALDELEIMFKALEKSKAIGKIVFDLSLARGLDYYTGVIYEAVFKGAQVGSIAAGGRYDNLVG 630 (763)
T ss_pred HHHHHhhHhhccChHHHHHHHHHHHHHHHHHhcCCCccEEECCcccCCCcccCceEEEEEEcCCccceeeecCCchhHHH
Confidence 00 0011 1 112 67788888 6888874 212 255677888753
Q ss_pred --CCceeeeeeeccccccceeeEEEEEeeCCCCcccCCcccceeEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeee
Q 010413 274 --KGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANM 351 (511)
Q Consensus 274 --~g~~~~v~~~~~Gi~eRli~~Lie~~~d~~G~~lP~~laP~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~ 351 (511)
.|+..|+.+.++| ++|++.+|.+.... ....++ -.+.+|+|++.+ ++...++.++++.||++||+|++
T Consensus 631 ~FgG~~vPAVGFSiG-IERL~~~L~~~~~~-~~~~~~--~~~~dVlV~s~g------~~~l~~alkia~~LR~aGI~aE~ 700 (763)
T PLN02972 631 MFSGKQVPAVGVSLG-IERVFAIMEQQEEE-KSQVIR--PTETEVLVSIIG------DDKLALAAELVSELWNAGIKAEY 700 (763)
T ss_pred hcCCCCCCEEEEEec-HHHHHHHHHHcccC-CCCCCC--CCCCcEEEEEeC------HHHHHHHHHHHHHHHHCCCEEEE
Confidence 2444466666666 69999876442110 000111 134689999987 35677899999999999999999
Q ss_pred cCCCCCCCCCCCCcccccCceeEeeeCcccccCCcEEEEEccCCCccccccchHHHHHHHHHH
Q 010413 352 DSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLD 414 (511)
Q Consensus 352 D~~~~~~lg~k~~~ae~~giP~~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~el~~~i~~~l~ 414 (511)
+. . .++++++++|++.|+|++|+||++|+++++|+||++.++++..|+++++++.|++.|.
T Consensus 701 ~~-~-~kl~kq~~~A~k~gi~~vVIIGe~E~~~g~VkVKnL~tgeq~~V~~delv~~l~~~l~ 761 (763)
T PLN02972 701 KV-S-TRKAKHLKRAKESGIPWMVLVGEKELSKGFVKLKNLEAGVEEEVDRTCFVQELKAELL 761 (763)
T ss_pred eC-C-CCHHHHHHHHHHCCCCEEEEECchHHhCCeEEEEECCCCcceEeeHHHHHHHHHHHhc
Confidence 77 3 4899999999999999999999999999999999999999999999999888876653
No 43
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=100.00 E-value=6.6e-35 Score=307.41 Aligned_cols=314 Identities=17% Similarity=0.163 Sum_probs=240.5
Q ss_pred eeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhc-ccCCCcceeeEeccCCCCCCCceeecC
Q 010413 56 DISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDH-IEGFAPEVAWVTKSGESDLEVPIAIRP 134 (511)
Q Consensus 56 ~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~-~~~f~~emy~~~~~g~~~l~~~l~LRP 134 (511)
+++|+.+|+|.++.+++.|++.+++.+.++||++|.||+|++.++|.+.+|. .+.+.++||.|.|.+ ++.++|||
T Consensus 2 ~p~G~~d~~p~~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~d~~----g~~l~LRp 77 (397)
T TIGR00442 2 APRGTRDFLPEEMIKWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKDKG----GRSLTLRP 77 (397)
T ss_pred CCCCcCCCCHHHHHHHHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEEEECCC----CCEEeecC
Confidence 5789999999999999999999999999999999999999999999765543 344678999999876 48999999
Q ss_pred CCccccchhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhh
Q 010413 135 TSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 214 (511)
Q Consensus 135 t~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~l 214 (511)
+.|++++++++.... ++++|+|+||+|+|||+| +++.| |.|||+|.++|+++.+...+++|++.++ .++++.+
T Consensus 78 D~T~~iaR~~~~~~~-~~~~p~r~~y~g~vfR~e-~~~~g--r~ref~Q~g~eiig~~~~~~d~E~i~l~---~e~l~~l 150 (397)
T TIGR00442 78 EGTAPVARAVIENKL-LLPKPFKLYYIGPMFRYE-RPQKG--RYRQFHQFGVEVIGSDSPLADAEIIALA---AEILKEL 150 (397)
T ss_pred CCcHHHHHHHHhccc-ccCCCeEEEEEcCeecCC-CCCCC--cccceEEcCeeeeCCCCHHHHHHHHHHH---HHHHHHc
Confidence 999999999887643 467999999999999999 45678 9999999999999988878888876555 7888888
Q ss_pred hccc-cc--ccccc-----------------c-cccc------------cCc----------c-----------------
Q 010413 215 LAVP-VI--KGKKS-----------------E-LEKF------------AGG----------L----------------- 234 (511)
Q Consensus 215 g~ip-~~--~g~~~-----------------~-~ek~------------~ga----------~----------------- 234 (511)
| ++ +. ++... + .+++ .+. +
T Consensus 151 g-~~~~~i~i~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (397)
T TIGR00442 151 G-IKDFTLEINSLGILEGRLEYREALLRYLDKHLDKLGEDSVRRLEKNPLRILDSKNEKIQELLKEAPKILDFLDEESRA 229 (397)
T ss_pred C-CCceEEEecCcccHHHHHHHHHHHHHHHHHhHhhcCHHHHHHHhhccccCchhhhHHHHHHHhcCHHHHHHhhHHHHH
Confidence 7 33 21 11000 0 0000 000 0
Q ss_pred ---------ceeeEEEee-cCCCcccc--ccccccc-----ccccccceeeEEeCC----CCceeeeeeeccccccceee
Q 010413 235 ---------YTTTVEAFI-PNTGRGIQ--GATSHCL-----GQNFSKMFEIIFENE----KGEKAMAWQNSWAYTTRTIG 293 (511)
Q Consensus 235 ---------y~~~ie~~~-p~~gr~lq--~gt~~~l-----g~~~s~~f~i~y~~~----~g~~~~v~~~~~Gi~eRli~ 293 (511)
....+...+ |++.|+++ +|.+|+. |...+-.-|.+|+.- .|...++.+.+++ ++|++.
T Consensus 230 ~l~~l~~~l~~~~~~i~~dl~~~r~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~f~~~~~~avGfs~~-~~~l~~ 308 (397)
T TIGR00442 230 HFEELKELLDALGIPYKIDPSLVRGLDYYTGTVFEFVTDELGAQGTICGGGRYDGLVEELGGPPTPAVGFAIG-IERLLL 308 (397)
T ss_pred HHHHHHHHHHHcCCCEEECCccccCchhhcceEEEEEECCCCccceeeeccchHHHHHHhCCCCCceEEeeec-HHHHHH
Confidence 001112222 56677777 5777652 111344556777642 2333355555555 799998
Q ss_pred EEEEEeeCCCCcccCCcccceeEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeeecCCCCCCCCCCCCcccccCcee
Q 010413 294 VMVMVHGDDKGLVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPL 373 (511)
Q Consensus 294 ~Lie~~~d~~G~~lP~~laP~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~~lg~k~~~ae~~giP~ 373 (511)
+|.+. ...|++.+|.+|.|++++ ++...++.++++.||++|++|+++... .++++++++|+..|+|+
T Consensus 309 ~l~~~------~~~~~~~~~~~vlV~~~~------~~~~~~~~~i~~~Lr~~gi~v~~~~~~-~~l~k~~~~a~~~g~~~ 375 (397)
T TIGR00442 309 LLEEL------GLEPPEESSPDVYVVPLG------EEAELEALKLAQKLRKAGIRVEVDLGG-RKLKKQLKYADKLGARF 375 (397)
T ss_pred HHHhc------CCCCCCCCCCcEEEEEeC------HHHHHHHHHHHHHHHhCCCeEEEeCCC-CCHHHHHHHHHHcCCCE
Confidence 88663 235666688999999987 356778999999999999999999877 58999999999999999
Q ss_pred EeeeCcccccCCcEEEEEccCC
Q 010413 374 RIEIGPKDLAKNQVRAVRRDNG 395 (511)
Q Consensus 374 ~iivG~~E~e~~~Vtvr~r~~~ 395 (511)
+|+||++|+++++|+||++.+|
T Consensus 376 ~i~ig~~e~~~~~v~vrnl~~~ 397 (397)
T TIGR00442 376 AVILGEDELANGTVTLKDLETG 397 (397)
T ss_pred EEEEChhHHhCCeEEEEeCCCC
Confidence 9999999999999999999874
No 44
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.1e-35 Score=294.07 Aligned_cols=291 Identities=15% Similarity=0.132 Sum_probs=255.5
Q ss_pred CCCCccccccceeecceecccCChhhhHHHhhhccceeeee---eece--eEEeccchHHHHHHHHHHHHHHHHhcceee
Q 010413 15 GGGKKKEVKKETGLGLSYKKDENFGEWYSEVVVNGEMIEYY---DISG--CYIIRPWAMSIWETMQKFFDAEIKKMKIQN 89 (511)
Q Consensus 15 ~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~a~~~d~~---~~~G--~~~~~P~g~~i~~~I~~~~~~~~~~~G~~e 89 (511)
-++|+.+...+|++|-. ..+..++++. .|++.-+++|.. .++| .|+++..++.+.++|+++.-+.+.+.||.+
T Consensus 129 v~~ee~~~~v~~~~~~~-~~~~~~~~~~-~l~~~~~~~~~~~~a~vsG~r~Yyl~g~~a~LeqALi~yal~~l~~kGy~p 206 (455)
T KOG2509|consen 129 VSNEEQANVVQRVGGPL-EFEFKLSHHD-ELVRALGFIDLERGAKVSGHRGYYLKGAGAFLEQALINYALDFLNAKGYTP 206 (455)
T ss_pred CCchhhhhHHHHhcCCc-ccccccccHH-HHHHhcccccccchhhcccccceEEcCHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 46788888889988876 3344455553 345566676764 3555 588999999999999999999999999999
Q ss_pred eeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhhhhhcCCCCccccccccceEeeee
Q 010413 90 CYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEF 169 (511)
Q Consensus 90 v~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~ 169 (511)
+.+|.|.+.++++ +.|....|.+++|.+.|.+ ++.+|..|+|.+++.++++......+||+|+..+++|||.|+
T Consensus 207 l~~P~i~rkeVm~-~cg~~~~~d~~~~y~ld~~-----~~~~LiaTaE~plAa~~~~e~~~~~~lPiK~vg~S~CfR~Ea 280 (455)
T KOG2509|consen 207 LTTPDILRKEVMQ-KCGQLPRFDEEQYYVLDGG-----DEKYLIATAEQPLAAYHRDEWLEEDQLPIKYVGVSRCFRAEA 280 (455)
T ss_pred ccCchhhhHHHHH-HhccCcCCCcceEEeecCC-----ccceeEeeccchhhhhhcccccccccCceeeeehhHHHHHHh
Confidence 9999999999995 6999999999999998865 678999999999999999988888899999999999999998
Q ss_pred ----cCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhhhccccccccccccccccCccceeeEEEeecC
Q 010413 170 ----SNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPN 245 (511)
Q Consensus 170 ----~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~lg~ip~~~g~~~~~ek~~ga~y~~~ie~~~p~ 245 (511)
+.++||+|+|||++.|+.+ .|+|+++.+++.+|+.+..++|+.|| |||.+...+..+....|+..+|||+|||+
T Consensus 281 Gs~G~d~~GlyRVHqF~KVE~Fv-it~Pe~S~~~~eEmi~~~eef~qsLg-ip~rvl~m~S~eLg~aAakKyDiEAWmPg 358 (455)
T KOG2509|consen 281 GSHGKDTKGLYRVHQFEKVEQFV-ITGPEDSWEMLEEMINNQEEFYQSLG-LPYRVLNMPSGELGAAAAKKYDIEAWMPG 358 (455)
T ss_pred hhcccccccceeeeeeeeeEEEE-ecCcchhHHHHHHHHHHHHHHHHHhC-CceeEecCCchhhCcHHHhhcchhhhcCc
Confidence 2477999999999999998 99999999999999999999999998 99999888878888888889999999998
Q ss_pred CCcccccccccccccccccceeeEEe---CCCCceeeeeee-cccc-ccceeeEEEEEeeCCCCcccCCccccee
Q 010413 246 TGRGIQGATSHCLGQNFSKMFEIIFE---NEKGEKAMAWQN-SWAY-TTRTIGVMVMVHGDDKGLVLPPRVASVQ 315 (511)
Q Consensus 246 ~gr~lq~gt~~~lg~~~s~~f~i~y~---~~~g~~~~v~~~-~~Gi-~eRli~~Lie~~~d~~G~~lP~~laP~q 315 (511)
.|+.-++.++.|+.+++|+|++++|. ..+|+.++||+. +..+ ++|+|.+|+|+|++++|+.+|..|.|+-
T Consensus 359 rg~ygEl~ScSNCTDyQSRRL~IRy~~~k~~~~~~~yvHtLN~TacA~~R~l~aiLEnyQ~edGi~VPe~Lr~ym 433 (455)
T KOG2509|consen 359 RGAYGELVSCSNCTDYQSRRLGIRYGQKKTNDGEKKYVHTLNGTACATPRALCAILENYQTEDGIEVPEVLRPYM 433 (455)
T ss_pred ccccccccccccchhHHHhhhhhhcccccccCCccceeeecchhhHhhhHHHHHhHhhccCCCCccCCHhHHhhc
Confidence 88888999999999999999999998 467888899994 4444 8999999999999999999999888763
No 45
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=100.00 E-value=4.8e-34 Score=279.37 Aligned_cols=226 Identities=23% Similarity=0.288 Sum_probs=184.1
Q ss_pred hHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhh
Q 010413 67 AMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSK 146 (511)
Q Consensus 67 g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~ 146 (511)
|+.++++|++++++.+.++||++|.||+|++.++|. .++|++.|.++||.+++.++...++.++||||+|+++++++++
T Consensus 1 ~~~~~~~l~~~~~~~~~~~G~~ei~~P~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~ 79 (235)
T cd00670 1 GTALWRALERFLDDRMAEYGYQEILFPFLAPTVLFF-KGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSG 79 (235)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEECCeEcCHHHHh-hcCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhc
Confidence 678999999999999999999999999999999995 5889999999999999875222237899999999999999999
Q ss_pred hhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhhhccccccccccc
Q 010413 147 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSE 226 (511)
Q Consensus 147 ~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~lg~ip~~~g~~~~ 226 (511)
++.+|++||+|++|+|+|||+|.++..|+.|+|||+|.|+|+ +++++++.++..++++++.++|+.+| +|+.+...+.
T Consensus 80 ~~~~~~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~-~~~~~~~~~~~~e~~~~~~~~l~~lg-l~~~i~~~~~ 157 (235)
T cd00670 80 EILSYRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVV-FGEPEEAEEERREWLELAEEIARELG-LPVRVVVADD 157 (235)
T ss_pred cCccchhcCeeeeeecccccCCCCCCCCChhheeeeeceEEE-EcCHHHHHHHHHHHHHHHHHHHHHcC-CcEEEEEccC
Confidence 999999999999999999999977656899999999999999 55666777888888999999999997 7988766655
Q ss_pred cccc--------cCccceeeEEEeecCCCcccccccccccccccccceeeEEeCCCCceeeeeeecccc-ccceeeEEE
Q 010413 227 LEKF--------AGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAY-TTRTIGVMV 296 (511)
Q Consensus 227 ~ek~--------~ga~y~~~ie~~~p~~gr~lq~gt~~~lg~~~s~~f~i~y~~~~g~~~~v~~~~~Gi-~eRli~~Li 296 (511)
++.+ +.+..+.++++++|..|+.+++++++..++.. .++...|.+.+|....+|+.+++. ++|++++|+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~d~e~~~~~~g~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~eR~l~all 235 (235)
T cd00670 158 PFFGRGGKRGLDAGRETVVEFELLLPLPGRAKETAVGSANVHLD-HFGASFKIDEDGGGRAHTGCGGAGGEERLVLALL 235 (235)
T ss_pred hhhccCCccccccccCCceEEEEEecCCCCceeeeEEEeecchh-hhhccEEEccCCCceeeEEEeCccHHHHHHHHHC
Confidence 5443 22334456677777558999999999544444 444444455556556777777766 789998764
No 46
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=4.9e-33 Score=279.37 Aligned_cols=337 Identities=19% Similarity=0.161 Sum_probs=251.4
Q ss_pred eeeeeeeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCce
Q 010413 51 MIEYYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPI 130 (511)
Q Consensus 51 ~~d~~~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l 130 (511)
..++.+++|++||-|..+.++++|.+.+.+.|++||++.|+||+|+..++|..+-|+- .+-+|.+.|.| ++.+
T Consensus 57 k~~lKtPKGTrD~~p~qm~lRe~if~~i~~vFkrhGa~~iDTPVFElkeiL~gKYGEd---skLiYdlkDQG----GEl~ 129 (518)
T KOG1936|consen 57 KFSLKTPKGTRDFSPEQMALREKIFSTIKEVFKRHGAETIDTPVFELKEILTGKYGED---SKLIYDLKDQG----GELC 129 (518)
T ss_pred ceeecCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeeccccchhHHHHHhhhcccc---cceeEehhhcC----CcEE
Confidence 3456689999999999999999999999999999999999999999999997655532 26799999999 5999
Q ss_pred eecCCCccccchhhhhhhhcCCCCccccccccceEeeeecC--CCCcccchhhhcccCcccc-cChhhhHHHHHHHHHHH
Q 010413 131 AIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSN--PTPFIRSREFLWQEGHTAF-ATKSEADDEVLQILELY 207 (511)
Q Consensus 131 ~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~--~~Gl~R~REF~q~e~~~~~-~~~e~a~~e~~~~l~~~ 207 (511)
+|||+.|++++++.+.+ +---+|+|+|+.|||++ .| ++| |+|||+|+|++|++ +++--+|+|...++
T Consensus 130 SLRYDLTVPfARylAmN----ki~sikRy~iAkVyRRd-~P~mtrG--R~REFYQcDFDIAG~~d~M~pdaE~lkiv--- 199 (518)
T KOG1936|consen 130 SLRYDLTVPFARYLAMN----KITSIKRYHIAKVYRRD-QPAMTRG--RYREFYQCDFDIAGQFDPMIPDAECLKIV--- 199 (518)
T ss_pred EeecccccHHHHHHHHc----ccccceeeeEEEEEecc-Cchhhch--hhhhhhccCccccccCCCCCchHHHHHHH---
Confidence 99999999998887765 22347899999999999 45 789 99999999999998 67777788877666
Q ss_pred HHHHhhhhcccccc---------------c----------------cccccc---------cc-----------------
Q 010413 208 RRIYEEFLAVPVIK---------------G----------------KKSELE---------KF----------------- 230 (511)
Q Consensus 208 ~~i~~~lg~ip~~~---------------g----------------~~~~~e---------k~----------------- 230 (511)
.++++.|++-.|.+ | ++..|| ++
T Consensus 200 ~e~L~~l~Igd~~iKvNhRkiLdgmf~v~GVp~~~frtICSsIDKLdK~pwedVkkEmv~eKGlsee~ad~igeyv~~~g 279 (518)
T KOG1936|consen 200 VEILSRLGIGDYGIKVNHRKILDGMFAVCGVPEDKFRTICSSIDKLDKMPWEDVKKEMVFEKGLSEEAADRIGEYVSLKG 279 (518)
T ss_pred HHHHhhcCccceEEEecHHHHHHHHHHHhCCCHHHhhhHHHhhhhhhcCCHHHHHHHHHHhcCCCHHHHHHHHHHhhhcc
Confidence 78888776312210 1 111121 00
Q ss_pred ---------cCc-------------------cce--eeEEEee---cCCCcccc--ccccccc-----------------
Q 010413 231 ---------AGG-------------------LYT--TTVEAFI---PNTGRGIQ--GATSHCL----------------- 258 (511)
Q Consensus 231 ---------~ga-------------------~y~--~~ie~~~---p~~gr~lq--~gt~~~l----------------- 258 (511)
+++ .|. ..++.++ +++.|||+ +|.|++.
T Consensus 280 ~~eL~e~l~~d~~l~~n~~a~eal~dlk~Lf~y~~~fg~s~~isfDlSLARGLDYYTGvIyEav~~~~~~~~~a~~~~~~ 359 (518)
T KOG1936|consen 280 LDELLEKLIADPKLSQNEAAKEALADLKQLFEYLEIFGISERISFDLSLARGLDYYTGVIYEAVLRGLRLICPAGRYDQA 359 (518)
T ss_pred HHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHcCCcceEEeehHHhccchhhhceeeeeeeccccccCcchhhhcc
Confidence 000 000 1111211 45667776 3544431
Q ss_pred -----ccccccceeeEEeC------CCCceeeeeeeccccccceeeEEEEEeeCCCCcccCCcccceeEEEEeeccCccc
Q 010413 259 -----GQNFSKMFEIIFEN------EKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYKDAD 327 (511)
Q Consensus 259 -----g~~~s~~f~i~y~~------~~g~~~~v~~~~~Gi~eRli~~Lie~~~d~~G~~lP~~laP~qV~Iipi~~~~~~ 327 (511)
+.-.|-+.+.+|++ +.+.+.|+.+.|+| ++|++..|-+... ..+..+- -.-+||.|.....
T Consensus 360 ~~~e~~~vGSvaaGGRYDnLv~mf~~k~~~vPcvG~S~G-VeRiFsile~r~~-~~~~~iR--~t~t~V~V~~~~k---- 431 (518)
T KOG1936|consen 360 GSTEPGGVGSVAAGGRYDNLVGMFDKKGDKVPCVGQSVG-VERIFSILEQRAA-TVATKIR--TTETQVYVAAAGK---- 431 (518)
T ss_pred ccccCCCccccccCcchhhHHHHhccccCcCCccceeeh-HhHHHHHHHHHHH-hhhhccc--cCceEEEEEecCC----
Confidence 11234455567753 33445588889999 6999987754322 1122221 2346788777663
Q ss_pred hhHHHHHHHHHHHHHHHcCceeeecCCCCCCCCCCCCcccccCceeEeeeCcccccCCcEEEEEccCCCccccccchHHH
Q 010413 328 TQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVE 407 (511)
Q Consensus 328 ~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~~lg~k~~~ae~~giP~~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~el~~ 407 (511)
..+....++.+.|+.+||.+++-...+.++-.+|.++++.|||++++||++|+++|.|.||+..+++.+.|+.++++.
T Consensus 432 --~~l~eR~k~v~~Lw~agI~aE~~yk~~~~~~~q~~~~e~~~ip~~vi~Ge~El~~G~V~vk~~~~re~~~v~~e~~v~ 509 (518)
T KOG1936|consen 432 --NLLFERLKVVNALWDAGIKAEYLYKANPKLLKQFQYAEEAGIPLAVILGEEELADGSVKVKNVGTREEVLVKREQFVS 509 (518)
T ss_pred --chHHHHHHHHHHHHhcCcchhhhhhcCccHHHHHHHHHhcCCCeEEEechhhhcCCeEEEEecccccceeccHHHHHH
Confidence 357778889999999999999877654578899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 010413 408 RIKELLD 414 (511)
Q Consensus 408 ~i~~~l~ 414 (511)
.|++++.
T Consensus 510 ~l~~~l~ 516 (518)
T KOG1936|consen 510 ELKDLLS 516 (518)
T ss_pred HHHHHhc
Confidence 9888765
No 47
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=99.97 E-value=2.6e-32 Score=255.39 Aligned_cols=169 Identities=31% Similarity=0.461 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHHHH-hcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhhhh
Q 010413 70 IWETMQKFFDAEIK-KMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWI 148 (511)
Q Consensus 70 i~~~I~~~~~~~~~-~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~ 148 (511)
|+++|++++++.+. +.||++|.||+|++.++|. .+||++.|.++||.+++.+ +++++||||+|++++.++++.+
T Consensus 1 l~~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~-~sg~~~~~~~~~~~~~~~~----~~~~~L~pt~~~~~~~~~~~~~ 75 (173)
T PF00587_consen 1 LRNALERFIREEFVLKFGFQEVDTPILIPSEVWE-KSGHWDNFSDEMFKVKDRG----DEEYCLRPTSEPGIYSLFKNEI 75 (173)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEB--SEEEHHHHH-HHSHHHHHGGGSEEEEETT----TEEEEE-SSSHHHHHHHHHHHE
T ss_pred CHHHHHHHHHHHhHHhcCCEEEECCeEEehHHhh-hccccccccCCeeeeeecc----cccEEeccccccceeeeeccee
Confidence 68999999999999 9999999999999999996 5999999999999999877 3789999999999999999999
Q ss_pred hc-CCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhhhcc-ccccccccc
Q 010413 149 RG-HRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAV-PVIKGKKSE 226 (511)
Q Consensus 149 ~s-~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~lg~i-p~~~g~~~~ 226 (511)
.+ +++||++++|+|+|||+|.+++.|++|+|||+|.|+|+ +++++++..++..+++.+.++|+.|| + |+.+...++
T Consensus 76 ~~~~~~LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~-f~~~~~~~~~~~~~~~~~~~i~~~lg-l~~~~~~~~~~ 153 (173)
T PF00587_consen 76 RSSYRDLPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHI-FCTPEQSEEEFEELLELYKEILEKLG-LEPYRIVLSSS 153 (173)
T ss_dssp EBHGGGSSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEE-EESSHHHHHHHHHHHHHHHHHHHHTT-SGCEEEEEEET
T ss_pred eeccccCCeEEeecccccccccccccccceeeEeeeeceEE-EeCCcccHHHHHHHHHHHHHHHHHcC-CceEEEEEcCC
Confidence 99 99999999999999999988888999999999999999 55559999999999999999999998 7 999998888
Q ss_pred cccccCccceeeEEEeecC
Q 010413 227 LEKFAGGLYTTTVEAFIPN 245 (511)
Q Consensus 227 ~ek~~ga~y~~~ie~~~p~ 245 (511)
.+...++.+..++|+|+|+
T Consensus 154 ~~~~~~~~~~~d~e~~~~~ 172 (173)
T PF00587_consen 154 GELGAYAKYEFDIEAWFPA 172 (173)
T ss_dssp CTSCTTSSEEEEEEEEETC
T ss_pred CccCCCHHHcccHHHhCcC
Confidence 8888889999999999985
No 48
>KOG2298 consensus Glycyl-tRNA synthetase and related class II tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=9.4e-30 Score=257.94 Aligned_cols=351 Identities=20% Similarity=0.289 Sum_probs=241.9
Q ss_pred eeeceeEEeccchHHHHHHHHHHHHHHH-HhcceeeeeeecccChhhhhhhhhcccCCCccee---------eEecc---
Q 010413 55 YDISGCYIIRPWAMSIWETMQKFFDAEI-KKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVA---------WVTKS--- 121 (511)
Q Consensus 55 ~~~~G~~~~~P~g~~i~~~I~~~~~~~~-~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy---------~~~~~--- 121 (511)
..++|+|||.|.|..+..+|.+.||+.| .+-+..||..|++.|..++ +.|||++.|.+-|- ...|-
T Consensus 33 gGVsGLyD~GP~Gcalk~Nil~~WRkhFilEE~MlEvdct~ltP~~Vl-kaSGHVdkF~D~mvkD~ktGecfRADHLvk~ 111 (599)
T KOG2298|consen 33 GGVSGLYDFGPPGCALKSNILSLWRKHFILEEDMLEVDCTMLTPEPVL-KASGHVDKFADWMVKDEKTGECFRADHLVKD 111 (599)
T ss_pred cCcccccccCCCchhhHHhHHHHHHHHHhhhhcceeeccCcCCcHHHh-hcccchhhhhHHHhcCccccceehhhHHHHH
Confidence 3589999999999999999999999998 5678999999999999999 78999999988663 11000
Q ss_pred ---------------------------C------------------CCCC------------------CCceeecCCCcc
Q 010413 122 ---------------------------G------------------ESDL------------------EVPIAIRPTSET 138 (511)
Q Consensus 122 ---------------------------g------------------~~~l------------------~~~l~LRPt~e~ 138 (511)
+ +.+| +-.-+|||+..+
T Consensus 112 ~~~rl~~~~~~~~~~e~e~iLa~~d~~s~~el~~~~~kyni~sP~tgn~Ls~p~~FNLMF~T~IGpsG~~kgyLRPETAQ 191 (599)
T KOG2298|consen 112 AEERLKKKASAEVKAEMEKILAKLDGYSGQELGELISKYNIKSPVTGNDLSEPRQFNLMFETQIGPSGGLKGYLRPETAQ 191 (599)
T ss_pred HHHhhhcccchHHHHHHHHHHHHhcCCChHHHHHHHHhccCCCCCcCCCcCCCcccceeccccccCCCCcccccCccccc
Confidence 0 0001 235679999999
Q ss_pred ccchhhhhhhh-cCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhh-hHHHHHHHHHHHHHHHhhh--
Q 010413 139 VMYPYYSKWIR-GHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSE-ADDEVLQILELYRRIYEEF-- 214 (511)
Q Consensus 139 ~~~~~~~~~~~-s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~-a~~e~~~~l~~~~~i~~~l-- 214 (511)
++...|++... ..+.||+--.|+|+.||+|.+|+.||+|+|||+|.|++. |++|.. ...-+..+.+.--.+|..-
T Consensus 192 G~FlNFkrlle~N~~KlPFA~AqiG~~fRNEISpRsGLlRvrEF~maEIEH-FvdP~~K~h~kF~~V~~~~l~l~~~~~q 270 (599)
T KOG2298|consen 192 GQFLNFKRLLEFNQGKLPFASAQIGKSFRNEISPRSGLLRVREFTMAEIEH-FVDPLLKSHPKFSLVAAEKLRLFPRDKQ 270 (599)
T ss_pred cccccHHHHHHhcCCCCcchHHHhchHhhhccCcccCceeEEEeehHHhhc-cCCCCCCCChhhhhhhhhhhhhcchhhh
Confidence 99999988753 446899999999999999999999999999999999998 666643 2222222221111111110
Q ss_pred --hc----------c----------ccc----------cccccc-------------------cc----------cccC-
Q 010413 215 --LA----------V----------PVI----------KGKKSE-------------------LE----------KFAG- 232 (511)
Q Consensus 215 --g~----------i----------p~~----------~g~~~~-------------------~e----------k~~g- 232 (511)
|. + -|. +|...+ || +-.|
T Consensus 271 ~~g~~a~~~~lgEaV~kg~V~netlGyfi~Ri~~fL~~lGid~~rlRFRqH~~nEMAHYA~DCWDaEi~tSYGWIEcVG~ 350 (599)
T KOG2298|consen 271 LSGQSAQKVALGEAVAKGTVNNETLGYFIGRIYLFLNKLGIDKERLRFRQHMANEMAHYAFDCWDAEIKTSYGWIECVGC 350 (599)
T ss_pred hccchhhHhHHHHHHHhhccccchhHHHHHHHHHHHHHhCcchhhcchHHHhhhhhhhhhccccchhhhhccCcEEEeec
Confidence 00 0 000 111000 00 0000
Q ss_pred ---ccce---------------------eeEEEee--cC---CCc-------ccccc-----------cccccccccccc
Q 010413 233 ---GLYT---------------------TTVEAFI--PN---TGR-------GIQGA-----------TSHCLGQNFSKM 265 (511)
Q Consensus 233 ---a~y~---------------------~~ie~~~--p~---~gr-------~lq~g-----------t~~~lg~~~s~~ 265 (511)
+.|. -.++.++ |. +|. .++-. +.-+|+.+ ..
T Consensus 351 ADRs~yDL~~Hs~~t~~~Lv~~~kl~ePkeve~~~i~~~kk~~g~~fk~~ak~v~~~l~~~s~~e~~~~~~~L~~~--g~ 428 (599)
T KOG2298|consen 351 ADRAAYDLSTHSRASKVWLVAELRLREPKEVEFAVIPPNKKELGCAFKKDAKGVNETLIFPSGKELIETLENLGDH--GL 428 (599)
T ss_pred cchhheeeecCccccCCceeehhhcCCcceEEEEEeccchhhcchhhhhcccchhHHhhcCCHHHHHHHHHHhhcC--Cc
Confidence 0000 1122222 11 111 11100 00012111 01
Q ss_pred eeeEEeCCC------Cc-ee---------eeeeeccccccceeeEEEEEee----CC-CC-cccCCcccceeEEEEeecc
Q 010413 266 FEIIFENEK------GE-KA---------MAWQNSWAYTTRTIGVMVMVHG----DD-KG-LVLPPRVASVQVIVVPVPY 323 (511)
Q Consensus 266 f~i~y~~~~------g~-~~---------~v~~~~~Gi~eRli~~Lie~~~----d~-~G-~~lP~~laP~qV~Iipi~~ 323 (511)
+.+..-+.+ ++ ++ .+...||| +.|++.+|.||.- |+ ++ +.+||.+||++|.|.|++.
T Consensus 429 ~~~~v~~l~k~~v~i~~~~k~~hV~e~~P~VIEPSfG-iGRI~Y~l~EHsF~R~~de~R~~~sfpp~vAPiK~~v~pls~ 507 (599)
T KOG2298|consen 429 LHMYVVNLSKLHVRIKRKTKVPHVREVNPDVIEPSFG-IGRISYQLTEHSFTRKGDEQRKVLSFPPLVAPIKVALDPLSP 507 (599)
T ss_pred EEEEEEecccceeeeeeeeeeeeEEeecCCcccccch-hhHHHHHHHhhhhccCcccccceeccCccccceEEEEEeccC
Confidence 111100000 11 11 24456999 4999999999732 22 22 6799999999999999986
Q ss_pred CccchhHHHHHHHHHHHHHHHcCceeeecCCCCCCCCCCCCcccccCceeEeeeCcccccCCcEEEEEccCCCccccccc
Q 010413 324 KDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRS 403 (511)
Q Consensus 324 ~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~~lg~k~~~ae~~giP~~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~ 403 (511)
. ++..+.+..|.+.|+++||.+.+|+++ .++|+++..-+.+||||-|.|....+++++||+|.||+..|..+.++
T Consensus 508 n----~ef~pv~~~ls~~L~~~gis~kvdds~-~SIGrrYAr~DElgipFgiTvDfdtlk~~tVTlReRdS~~QvR~~i~ 582 (599)
T KOG2298|consen 508 N----LEFRPVCQGLSNELTENGISVKVDDSS-SSIGRRYARTDELGIPFGVTVDFDTLKNGTVTLRERDSTMQVRMHIS 582 (599)
T ss_pred c----hhHHHHHHHHHHHHHhCCCeEEecCCC-CcHhhhhhccccccCceEEEEchhhhcCceEEEeecccHHHHHhhHH
Confidence 5 578999999999999999999999998 59999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHH
Q 010413 404 SLVERIKELLDE 415 (511)
Q Consensus 404 el~~~i~~~l~~ 415 (511)
+++..|.+++..
T Consensus 583 e~~s~v~~~~~g 594 (599)
T KOG2298|consen 583 KLKSFLIKYISG 594 (599)
T ss_pred HHHHHHHHHhcc
Confidence 999888777654
No 49
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.94 E-value=3.3e-27 Score=248.00 Aligned_cols=285 Identities=16% Similarity=0.080 Sum_probs=210.1
Q ss_pred eeeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEecc-CCCCCCCceeec
Q 010413 55 YDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKS-GESDLEVPIAIR 133 (511)
Q Consensus 55 ~~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~-g~~~l~~~l~LR 133 (511)
..++|+.|++|..+..++.|++.+++.|+++||++|.||+|++.++|.+.+|+ ...++||.|.|. + ++.++||
T Consensus 4 ~~p~G~~D~lp~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g~--~~~~~~~~f~d~~~----g~~l~LR 77 (391)
T PRK12292 4 QLPEGIRDLLPEEARKIEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGGA--ILDLRTFKLVDQLS----GRTLGLR 77 (391)
T ss_pred CCCCcchhcCHHHHHHHHHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCCc--cchhhhEEEeecCC----CCEEEEC
Confidence 46899999999999999999999999999999999999999999999766663 346889999998 5 5899999
Q ss_pred CCCccccchhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhh
Q 010413 134 PTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEE 213 (511)
Q Consensus 134 Pt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~ 213 (511)
|+.|++++++++..... ...|+|+|++|+|||+| +++.| |.|||+|.++++++.++..+|+|++.++ .++++.
T Consensus 78 pD~T~~iaR~~a~~~~~-~~~p~r~~y~g~vfR~~-~~~~g--r~ref~Q~g~EiiG~~~~~aDaEvi~l~---~~~l~~ 150 (391)
T PRK12292 78 PDMTAQIARIAATRLAN-RPGPLRLCYAGNVFRAQ-ERGLG--RSREFLQSGVELIGDAGLEADAEVILLL---LEALKA 150 (391)
T ss_pred CCCcHHHHHHHHHhccC-CCCCeEEEeeceeeecC-CCcCC--CccchhccceEEeCCCCchHHHHHHHHH---HHHHHH
Confidence 99999999998876432 36899999999999999 57889 9999999999999999999999987776 777877
Q ss_pred hhccccc--ccc-------------ccc----------------ccc------------------ccCc-----------
Q 010413 214 FLAVPVI--KGK-------------KSE----------------LEK------------------FAGG----------- 233 (511)
Q Consensus 214 lg~ip~~--~g~-------------~~~----------------~ek------------------~~ga----------- 233 (511)
+|.-++. +|. ..+ .+. ..|.
T Consensus 151 lgl~~~~i~i~~~~i~~~il~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~g~~~~l~~~~~~~ 230 (391)
T PRK12292 151 LGLPNFTLDLGHVGLFRALLEAAGLSEELEEVLRRALANKDYVALEELVLDLSEELRDALLALPRLRGGREVLEEARKLL 230 (391)
T ss_pred cCCCCeEEEeccHHHHHHHHHHcCCCHHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 7621121 110 000 000 0010
Q ss_pred --------------------cceeeEEEee-cCCCcccc--ccccccc---ccccccceeeEEeCCC---Cceeeeeeec
Q 010413 234 --------------------LYTTTVEAFI-PNTGRGIQ--GATSHCL---GQNFSKMFEIIFENEK---GEKAMAWQNS 284 (511)
Q Consensus 234 --------------------~y~~~ie~~~-p~~gr~lq--~gt~~~l---g~~~s~~f~i~y~~~~---g~~~~v~~~~ 284 (511)
.++......+ |++.|+++ +|++|+. +...+..-|.+|++.- |+..++.+.+
T Consensus 231 ~~~~~~~~l~~L~~l~~~l~~~~~~~~i~~D~~lvrgl~YYtG~vFe~~~~~~~~~i~~GGRYD~L~~~fg~~~pAvGfa 310 (391)
T PRK12292 231 PSLPIKRALDELEALAEALEKYGYGIPLSLDLGLLRHLDYYTGIVFEGYVDGVGNPIASGGRYDDLLGRFGRARPATGFS 310 (391)
T ss_pred cChHHHHHHHHHHHHHHHHHHhCCCceEEEehhhccCCcCccceEEEEEECCCCCcccCCcchhhHHHHcCCCCCCceEE
Confidence 0111111223 67788887 6888864 2222355677786532 3433544444
Q ss_pred cccccceeeEEEEEeeCCCCcccCCcccceeEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeeecCCCCCCCCCCCC
Q 010413 285 WAYTTRTIGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYS 364 (511)
Q Consensus 285 ~Gi~eRli~~Lie~~~d~~G~~lP~~laP~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~~lg~k~~ 364 (511)
+| ++|++.+ .. +....|.+++|++... +....|.++++.||++|++|+++... +++++++.
T Consensus 311 i~-ldrl~~~-~~----------~~~~~~~~~~v~~~~~------~~~~~a~~~~~~Lr~~G~~~~~~~~~-~~~~~~~~ 371 (391)
T PRK12292 311 LD-LDRLLEL-QL----------ELPVEARKDLVIAPDS------EALAAALAAAQELRKKGEIVVLALPG-RNFEDARE 371 (391)
T ss_pred ee-HHHHHhh-cc----------ccccccCCcEEEEeCc------ccHHHHHHHHHHHHHcCCEEEEecCC-CChHHHHH
Confidence 44 7999863 11 1111345677887763 34567899999999999999999876 58889999
Q ss_pred cccccCc
Q 010413 365 HWEMKGV 371 (511)
Q Consensus 365 ~ae~~gi 371 (511)
+|+..|+
T Consensus 372 ~a~~~~~ 378 (391)
T PRK12292 372 YARDRQI 378 (391)
T ss_pred HHhhcCe
Confidence 9999998
No 50
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=99.92 E-value=1.4e-25 Score=222.46 Aligned_cols=156 Identities=15% Similarity=0.188 Sum_probs=134.8
Q ss_pred hhhccceeee-----eeeceeEEeccchHHHHHHHHHHHHHHHHhcc--eeeeeeecccChhhhhhhhhcccCCCcceee
Q 010413 45 VVVNGEMIEY-----YDISGCYIIRPWAMSIWETMQKFFDAEIKKMK--IQNCYFPLFVSPTVLQKEKDHIEGFAPEVAW 117 (511)
Q Consensus 45 ~~~~a~~~d~-----~~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G--~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~ 117 (511)
++.+.+++-. ..++|+++|+|.|+.++++|+++|++.+.++| |++|.||+|++.++|....|+++
T Consensus 4 l~~~~g~~~~~~eiy~~~~G~~d~~P~g~~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~~mf~~~~g~~d-------- 75 (254)
T cd00774 4 LAKRRGFVFPSSEIYGGVAGFYDYGPLGVELKNNIKSAWRKSFVLEEEDMLEIDSPIITPELMFKTSIGPVE-------- 75 (254)
T ss_pred HHhhcCCcccChhhccChhcccccCchHHHHHHHHHHHHHHHHHhcCCCeEEEeccccCCHHHheeeecccC--------
Confidence 3445555432 24899999999999999999999999999996 99999999999988854445432
Q ss_pred EeccCCCCCCCceeecCCCccccchhhhhhhhcCC-CCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhh
Q 010413 118 VTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHR-DLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEA 196 (511)
Q Consensus 118 ~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r-~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a 196 (511)
.+ ++.++|||++|+.+...|++...+++ +||++++|+|+|||+|.+|+.||+|+|||+|.|+|+ +++++++
T Consensus 76 ---~~----~~~~~Lrp~~~~~~~~~~~~~~~~~~~~lP~~~~qig~~fR~E~~~~~gl~R~ReF~q~d~~~-f~~~~~~ 147 (254)
T cd00774 76 ---SG----GNLGYLRPETAQGIFVNFKNLLEFNRRKLPFGVAQIGKSFRNEISPRNGLFRVREFTQAEIEF-FVDPEKS 147 (254)
T ss_pred ---CC----CcccccCCcccchHHHHHHHHHHHhCCCCCchhhhhchhhccccCcccceeeeccchhhheee-eECCCCc
Confidence 12 36899999999999999999888765 999999999999999998888999999999999999 6788899
Q ss_pred HHHHHHHHHHHHHHHhhhhc
Q 010413 197 DDEVLQILELYRRIYEEFLA 216 (511)
Q Consensus 197 ~~e~~~~l~~~~~i~~~lg~ 216 (511)
.+++..+++.+.++|.++|.
T Consensus 148 ~e~~~~v~~~~~~~l~~~G~ 167 (254)
T cd00774 148 HPWFDYWADQRLKWLPKFAQ 167 (254)
T ss_pred hHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999983
No 51
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.91 E-value=1.6e-24 Score=227.33 Aligned_cols=266 Identities=12% Similarity=0.014 Sum_probs=192.1
Q ss_pred eeeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecC
Q 010413 55 YDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRP 134 (511)
Q Consensus 55 ~~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRP 134 (511)
..++|+.|++|..+..++.|++.+++.++++||++|.||+|++.++|.+.+|. .....||.|.|.++ ++.++|||
T Consensus 8 ~~p~G~rD~lp~e~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g~--~~~~~~y~f~D~~~---g~~l~LRp 82 (392)
T PRK12421 8 LLPDGVADVLPEEAQKIERLRRRLLDLFASRGYQLVMPPLIEYLESLLTGAGQ--DLKLQTFKLIDQLS---GRLMGVRA 82 (392)
T ss_pred CCCCcccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeCcchhhHHHHhccCCc--cchhceEEEEcCCC---CcEEEECC
Confidence 36899999999999999999999999999999999999999999999765553 23467999999732 47899999
Q ss_pred CCccccchhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhh
Q 010413 135 TSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 214 (511)
Q Consensus 135 t~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~l 214 (511)
+.|+++++++++... ...|+|+||+|+|||++ +++.| |+|||+|.++++++.....+|+|++.++ .++++.+
T Consensus 83 D~T~~iaR~~a~~~~--~~~p~R~~Y~g~VfR~~-~~~~g--r~rEf~Q~GvEiiG~~~~~aDaEvi~l~---~e~l~~l 154 (392)
T PRK12421 83 DITPQVARIDAHLLN--REGVARLCYAGSVLHTL-PQGLF--GSRTPLQLGAELYGHAGIEADLEIIRLM---LGLLRNA 154 (392)
T ss_pred cCCHHHHHHHHhhcC--CCCceEEEEeeeEEEcC-CCcCC--CcCccceeceEEeCCCCchhHHHHHHHH---HHHHHHc
Confidence 999999998776542 25799999999999999 46779 9999999999999999999999998777 6778877
Q ss_pred hccccc--ccc-------------cc---------------------------ccc---------cccC-----------
Q 010413 215 LAVPVI--KGK-------------KS---------------------------ELE---------KFAG----------- 232 (511)
Q Consensus 215 g~ip~~--~g~-------------~~---------------------------~~e---------k~~g----------- 232 (511)
|.-.+. +|. .. ..+ ...|
T Consensus 155 gi~~~~l~ig~~~i~~~il~~l~l~~~~~~~l~~~l~kk~~~~l~~~~~~~~~~~~~~~~l~~L~~~~g~~~~l~~~~~~ 234 (392)
T PRK12421 155 GVPALHLDLGHVGIFRRLAELAGLSPEEEEELFDLLQRKALPELAEVCQNLGVGSDLRRMFYALARLNGGLEALDRALSV 234 (392)
T ss_pred CCCCeEEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHhh
Confidence 621111 100 00 000 0001
Q ss_pred -----c-----------------cceeeEEEee-cCCCcccc--ccccccc---ccccccceeeEEeCCC---Cceeeee
Q 010413 233 -----G-----------------LYTTTVEAFI-PNTGRGIQ--GATSHCL---GQNFSKMFEIIFENEK---GEKAMAW 281 (511)
Q Consensus 233 -----a-----------------~y~~~ie~~~-p~~gr~lq--~gt~~~l---g~~~s~~f~i~y~~~~---g~~~~v~ 281 (511)
. .+++.+...+ +++.|+++ +|++|+. +...+..-|.+|++.- |+..++.
T Consensus 235 ~~~~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~DlslvrgldYYTG~vFe~~~~~~~~~i~~GGRYD~L~~~fg~~~pAv 314 (392)
T PRK12421 235 LALQDAAIRQALDELKTLAAHLKNRWPELPVSIDLAELRGYHYHTGLVFAAYIPGRGQALARGGRYDGIGEAFGRARPAT 314 (392)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhhCCCceEEEeeccccCCCCcCCCEEEEEECCCCCcccCCCCccchhHhhCCCCCCc
Confidence 0 0111222223 56788888 6888864 2233456678887643 3333555
Q ss_pred eeccccccceeeEEEEEeeCCCCcccCCcccceeEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeeecCCC
Q 010413 282 QNSWAYTTRTIGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRD 355 (511)
Q Consensus 282 ~~~~Gi~eRli~~Lie~~~d~~G~~lP~~laP~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~ 355 (511)
+.++| ++|++.+| +.. + .+ +++|++.+. + ..+.++++.||+.|++|.++..+
T Consensus 315 Gfai~-lerL~~~l-~~~--------~---~~-~~~~~~~~~-----~---~~~~~~a~~LR~~G~~~~~~~~~ 366 (392)
T PRK12421 315 GFSMD-LKELLALQ-FLE--------E---EA-GAILAPWGD-----D---PDLLAAIAELRQQGERVVQLLPG 366 (392)
T ss_pred eEEee-HHHHHhhc-ccc--------c---CC-ceEEeecCC-----c---HHHHHHHHHHHhCCCEEEEeCCC
Confidence 44444 79998755 311 1 12 567777652 1 34678999999999999998654
No 52
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity. Polymerase gamma replicates and repairs mitochondrial DNA. The c-terminal domain of its B subunit is strikingly similar to the anticodon-binding domain of glycyl tRNA synthetase.
Probab=99.91 E-value=9.6e-25 Score=193.64 Aligned_cols=116 Identities=18% Similarity=0.159 Sum_probs=106.9
Q ss_pred EEEeeCCCCcccCCcccceeEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeeecCCCC--CCCCCCCCcccccCcee
Q 010413 296 VMVHGDDKGLVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRDN--YSPGWKYSHWEMKGVPL 373 (511)
Q Consensus 296 ie~~~d~~G~~lP~~laP~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~--~~lg~k~~~ae~~giP~ 373 (511)
+|++.|+.|++||+.+||+||+|+|+..++ +++.++|.+|++.|+++|++|.+|++++ .++|+||++|+++|+||
T Consensus 10 iE~~~d~~Gl~~P~~iAP~qV~Iipi~~~~---~~~~~~a~~l~~~L~~~gi~v~~D~r~~~~~~~G~k~~~~dliGiP~ 86 (128)
T cd02426 10 RKKGRQRQVLKLHPCLAPYKVAIDCGKGDT---AELRDLCQGLKNELREAGLSVWPGYLETQHSSLEQLLDKYDEMGVLF 86 (128)
T ss_pred hhcCCCCcEEECCCCCCCeEEEEEeccCCh---HHHHHHHHHHHHHHHHcCCEEEeccCcccccCHHHHHHhhhhcCCCE
Confidence 588889999999999999999999995332 6789999999999999999999999884 38999999999999999
Q ss_pred EeeeCcccccCCcEEEEEccCCCccccccchHHHHHHHHHH
Q 010413 374 RIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIKELLD 414 (511)
Q Consensus 374 ~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~el~~~i~~~l~ 414 (511)
+|+||++++++|+|++++|+|+++..|+++++++.+.+++.
T Consensus 87 ~I~IG~~~l~~g~vei~~Rdt~~k~~v~~~~l~~~i~~~~~ 127 (128)
T cd02426 87 TLLISEQTLENGLLQLRSRDTTLKETIHISDLPDYLLRYIA 127 (128)
T ss_pred EEEECCCcccCCEEEEEECCCCceEEEeHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999988877654
No 53
>PF09180 ProRS-C_1: Prolyl-tRNA synthetase, C-terminal; InterPro: IPR016061 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Prolyl tRNA synthetase (6.1.1.15 from EC) exists in two forms, which are loosely related. The first form is present in the majority of eubacteria species. The second one, present in some eubacteria, is essentially present in archaea and eukaryota. Prolyl-tRNA synthetase belongs to class IIa. This domain is found at the C-terminal in archaeal and eukaryotic enzymes, as well as in certain bacterial ones.; GO: 0000166 nucleotide binding, 0004827 proline-tRNA ligase activity, 0005524 ATP binding, 0006433 prolyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1NJ6_A 1NJ2_A 1NJ5_A 1NJ1_A 1H4T_C 1H4S_A 1HC7_C 1H4Q_B 3IAL_B.
Probab=99.89 E-value=2.8e-24 Score=168.89 Aligned_cols=68 Identities=44% Similarity=0.989 Sum_probs=54.7
Q ss_pred hhHHHHHhcCCceEEecCCCchhhhHHHHhhccccccccccccccCCCCCCCCCCcccccCCCcceEEeeeccC
Q 010413 438 WDEFVEALGQRKMILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEIPEGTLCFASGKPAKRWSYWGRSY 511 (511)
Q Consensus 438 ~~e~~~~~~~~~~~~~~wc~~~~ce~~ik~~~~~~~~~~~~~cip~~~~~~~~~~~C~~~g~~a~~~~~~~rsY 511 (511)
||||+++|++||||++||||+.+||++||++| ||++|||||+.+. ..+.+|++||+||++++||||||
T Consensus 1 ~eE~k~~i~~gg~v~~pwcg~~ece~~ike~t-----~at~rciP~~~~~-~~~~~Ci~cgk~a~~~~~farsY 68 (68)
T PF09180_consen 1 YEEFKEAIEKGGFVLVPWCGDEECEEKIKEET-----GATIRCIPFDEQE-PEGGKCIVCGKPAKKWVLFARSY 68 (68)
T ss_dssp HHHHHHHHHTSSEEEEEES-SHHHHHHHHHHH-----S-EEEEEETTSCE-BTT-B-TTT-SB-SCEEEEE-B-
T ss_pred ChHHHHHHhCCCEEEEEccCCHHHHHHHHHhc-----CCcEeEeEccCCC-CCCCeeecCCChhhEEEEEEEEC
Confidence 79999999889999999999999999999999 9999999999322 23457999999999999999999
No 54
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=99.81 E-value=3.8e-20 Score=189.20 Aligned_cols=141 Identities=21% Similarity=0.156 Sum_probs=124.8
Q ss_pred EEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCcccc
Q 010413 61 YIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVM 140 (511)
Q Consensus 61 ~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~ 140 (511)
+|++|.++.+++.|++.+++.++++||++|.||+|++.++|.+.+| ...++||.|.|.+ ++.++|||+.|+++
T Consensus 1 ~D~~p~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~---~~~~~~~~~~d~~----g~~l~LRpD~T~~i 73 (314)
T TIGR00443 1 RDLLPEEAARKEEIERQLQDVFRSWGYQEIITPTLEYLDTLSAGGG---ILNEDLFKLFDSL----GRVLGLRPDMTTPI 73 (314)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCeeccCcchhhHHHhcccCC---cchhceEEEECCC----CCEEeecCcCcHHH
Confidence 4789999999999999999999999999999999999999965433 3678999999876 48999999999999
Q ss_pred chhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhhh
Q 010413 141 YPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFL 215 (511)
Q Consensus 141 ~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~lg 215 (511)
+++++...+ ..++|+|++++|+|||+|. ++.| |.|||+|.++|+++.++..+|+|++.++ .++++.+|
T Consensus 74 aR~~~~~~~-~~~~p~r~~y~g~VfR~~~-~~~g--r~re~~Q~g~Eiig~~~~~adaEvi~l~---~~~l~~lg 141 (314)
T TIGR00443 74 ARAVSTRLR-DRPLPLRLCYAGNVFRTNE-SGAG--RSREFTQAGVELIGAGGPAADAEVIALL---IEALKALG 141 (314)
T ss_pred HHHHHHhcc-cCCCCeEEEEeceEeecCC-CcCC--CcccccccceEEeCCCCchhHHHHHHHH---HHHHHHcC
Confidence 999887655 3578999999999999994 5778 9999999999999988888888877666 78888887
No 55
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=99.79 E-value=2.3e-19 Score=178.73 Aligned_cols=135 Identities=19% Similarity=0.204 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhhh
Q 010413 68 MSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKW 147 (511)
Q Consensus 68 ~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~ 147 (511)
+.+++.|++.+++.++++||++|.||+|++.++|.+.+ .+...++||.|.|.+ ++.++|||+.|++++++++..
T Consensus 2 ~~~~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~--~~~~~~~~~~~~d~~----g~~l~LRpd~T~~iaR~~a~~ 75 (261)
T cd00773 2 AALRRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKS--GDEVSKEMYRFKDKG----GRDLALRPDLTAPVARAVAEN 75 (261)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEeeccceeeHHHhcccc--cccccceEEEEECCC----CCEEEeCCCCcHHHHHHHHhc
Confidence 57899999999999999999999999999999995433 455788999999876 489999999999999999987
Q ss_pred hhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhhh
Q 010413 148 IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFL 215 (511)
Q Consensus 148 ~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~lg 215 (511)
..+ .++|+|+|++|+|||+|. ++.| |.|||+|.++++++.+...+++|++.++ .++++.++
T Consensus 76 ~~~-~~~p~k~~y~g~vfR~e~-~~~g--~~re~~Q~g~Eiig~~~~~~daE~i~l~---~~~l~~lg 136 (261)
T cd00773 76 LLS-LPLPLKLYYIGPVFRYER-PQKG--RYREFYQVGVEIIGSDSPLADAEVIALA---VEILEALG 136 (261)
T ss_pred Ccc-CCCCeEEEEEcCEEecCC-CCCC--CccceEEeceeeeCCCChHHHHHHHHHH---HHHHHHcC
Confidence 766 579999999999999995 4667 9999999999999998888888876655 78888887
No 56
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=99.78 E-value=6e-19 Score=168.74 Aligned_cols=208 Identities=20% Similarity=0.225 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhhhhh
Q 010413 70 IWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIR 149 (511)
Q Consensus 70 i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~~ 149 (511)
+++.+++.+++.+...||+||.||.|++.+.+. ..++. .+.+..+.+.. ++..+|||+.++++..+++++.
T Consensus 1 ~~~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~-~~~~~---~~~~~~~~~~~----~~~~~LR~s~~~~l~~~~~~n~- 71 (211)
T cd00768 1 IRSKIEQKLRRFMAELGFQEVETPIVEREPLLE-KAGHE---PKDLLPVGAEN----EEDLYLRPTLEPGLVRLFVSHI- 71 (211)
T ss_pred CHHHHHHHHHHHHHHcCCEEeEcceecHHHHHH-HcCcc---HhheeeeecCC----CCEEEECCCCcHHHHHHHHhhc-
Confidence 368899999999999999999999999998874 34432 13455555443 4788999999999999998877
Q ss_pred cCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhhhc-cccccccccccc
Q 010413 150 GHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLA-VPVIKGKKSELE 228 (511)
Q Consensus 150 s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~lg~-ip~~~g~~~~~e 228 (511)
+++|+|+|++|+|||.|.+ +.++.|++||+|.++++++...+++ .++..+..++.++++.+|. +++.........
T Consensus 72 --~~~~~~lfeig~vfr~e~~-~~~~~~~~ef~~l~~~~~g~~~~~~-~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~ 147 (211)
T cd00768 72 --RKLPLRLAEIGPAFRNEGG-RRGLRRVREFTQLEGEVFGEDGEEA-SEFEELIELTEELLRALGIKLDIVFVEKTPGE 147 (211)
T ss_pred --ccCCEEEEEEcceeecCCC-ccccccceeEEEcCEEEEcCCchhH-HHHHHHHHHHHHHHHHcCCCcceEEEecCchh
Confidence 6899999999999999964 4445689999999999977654322 3456677778999999883 234432222222
Q ss_pred cc-cCccceeeEEEeecCCCcccccccccccccccccceeeEEeCCCCceeeeeeecccc-ccce
Q 010413 229 KF-AGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAY-TTRT 291 (511)
Q Consensus 229 k~-~ga~y~~~ie~~~p~~gr~lq~gt~~~lg~~~s~~f~i~y~~~~g~~~~v~~~~~Gi-~eRl 291 (511)
.+ +....+.+|...+| ++|+.++|++.++.....+.|+++|.+++++...++..++|+ ++|+
T Consensus 148 ~~~~~~g~~~~i~~~~~-~~~~~eig~~g~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~R~ 211 (211)
T cd00768 148 FSPGGAGPGFEIEVDHP-EGRGLEIGSGGYRQDEQARAADLYFLDEALEYRYPPTIGFGLGLERL 211 (211)
T ss_pred hccccCCceEEEEEEcc-CCCeEEEeeceeecCchhHhhhhheecccccccCceeecCccCccCC
Confidence 22 12333445555555 488999999998888888999999998888776667777777 8885
No 57
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.76 E-value=9.6e-19 Score=175.63 Aligned_cols=137 Identities=14% Similarity=0.061 Sum_probs=117.8
Q ss_pred eeeeeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceee
Q 010413 53 EYYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAI 132 (511)
Q Consensus 53 d~~~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~L 132 (511)
+...++|++|++|..+.+++.|++.+++.++++||++|.||+|+..+++.. .-.++||.|.|.+ ++.++|
T Consensus 4 ~~~~p~G~rD~lp~e~~~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~~~~------~~~~~~y~~~D~~----g~~l~L 73 (281)
T PRK12293 4 EHEIPQGSKLYFGKSAKLKREIENVASEILYENGFEEIVTPFFSYHQHQSI------ADEKELIRFSDEK----NHQISL 73 (281)
T ss_pred CCCCCCcccccCcHHHHHHHHHHHHHHHHHHHcCCeEeeccceeehhhhcc------cchhceEEEECCC----CCEEEE
Confidence 345799999999999999999999999999999999999999999988832 2357999999976 589999
Q ss_pred cCCCccccchhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHh
Q 010413 133 RPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYE 212 (511)
Q Consensus 133 RPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~ 212 (511)
||+.|++++++++..... ..+|+|++|+|+|||+|. |||+|.++++++.+.. +|++.++ .+.++
T Consensus 74 RpD~T~~iaR~~a~~~~~-~~~p~r~~Y~g~vfR~~~---------rEf~Q~GvEliG~~~~---~Evi~la---~~~l~ 137 (281)
T PRK12293 74 RADSTLDVVRIVTKRLGR-STEHKKWFYIQPVFRYPS---------NEIYQIGAELIGEEDL---SEILNIA---AEIFE 137 (281)
T ss_pred CCcCCHHHHHHHHHhccc-CCCceeEEEeccEEecCC---------CcccccCeEeeCCCCH---HHHHHHH---HHHHH
Confidence 999999999998876433 368999999999999982 8999999999998765 3655544 78888
Q ss_pred hhh
Q 010413 213 EFL 215 (511)
Q Consensus 213 ~lg 215 (511)
.+|
T Consensus 138 ~lg 140 (281)
T PRK12293 138 ELE 140 (281)
T ss_pred HcC
Confidence 887
No 58
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=99.74 E-value=3.3e-18 Score=174.60 Aligned_cols=142 Identities=17% Similarity=0.167 Sum_probs=116.3
Q ss_pred eeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCcc
Q 010413 59 GCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSET 138 (511)
Q Consensus 59 G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~ 138 (511)
|++||+|..++.++.|++.+++.|+++||++|.||+|++.+++...++. -.+++|.|.|.+ ++.++|||+.|+
T Consensus 1 G~~d~~~~~~~~~~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~---~~~~~~~~~D~~----G~~l~LR~D~T~ 73 (311)
T PF13393_consen 1 GFRDLLPEEARKRERIESKLREVFERHGYEEIETPLLEYYELFLDKSGE---DSDNMYRFLDRS----GRVLALRPDLTV 73 (311)
T ss_dssp T---B-HHHHHHHHHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHSST---TGGCSEEEECTT----SSEEEE-SSSHH
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEECCeEeecHHhhhcccc---chhhhEEEEecC----CcEeccCCCCcH
Confidence 8999999999999999999999999999999999999999999654432 245899999876 589999999999
Q ss_pred ccchhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHh-hhh
Q 010413 139 VMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYE-EFL 215 (511)
Q Consensus 139 ~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~-~lg 215 (511)
+++++++.... ...|.|++|+|+|||++ +++.| |.|||+|.++++++.+...+|+|++.++ .++++ .++
T Consensus 74 ~iaR~~a~~~~--~~~~~r~~y~g~vfR~~-~~~~g--~~re~~Q~g~Eiig~~~~~~daEvi~l~---~e~l~~~l~ 143 (311)
T PF13393_consen 74 PIARYVARNLN--LPRPKRYYYIGPVFRYE-RPGKG--RPREFYQCGFEIIGSSSLEADAEVIKLA---DEILDRELG 143 (311)
T ss_dssp HHHHHHHHCCG--SSSSEEEEEEEEEEEEE-TTTTT--BESEEEEEEEEEESSSSHHHHHHHHHHH---HHHHHHHHT
T ss_pred HHHHHHHHhcC--cCCCceEEEEcceeecc-ccCCC--CCceeEEEEEEEECCCCHHHHHHHHHHH---HHHHHhhcC
Confidence 99999988643 46899999999999999 55678 9999999999999999999999988776 67775 665
No 59
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.73 E-value=6.6e-18 Score=148.78 Aligned_cols=103 Identities=25% Similarity=0.422 Sum_probs=93.5
Q ss_pred cccCCcccceeEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeeecCCCCCCCCCCCCcccccCceeEeeeCcccccC
Q 010413 305 LVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAK 384 (511)
Q Consensus 305 ~~lP~~laP~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~~lg~k~~~ae~~giP~~iivG~~E~e~ 384 (511)
+.||+|++|+||+|+|+++ + ++...+|.+|++.||++|++|++|++ . ++++++++|++.|+|++|+||++|+++
T Consensus 18 ~~~P~~lap~~v~Ii~~~~-~---~~~~~~a~~la~~LR~~gi~v~~d~~-~-sl~kqlk~A~k~g~~~~iiiG~~e~~~ 91 (121)
T cd00858 18 LRLPPALAPIKVAVLPLVK-R---DELVEIAKEISEELRELGFSVKYDDS-G-SIGRRYARQDEIGTPFCVTVDFDTLED 91 (121)
T ss_pred EEcCCCcCCcEEEEEecCC-c---HHHHHHHHHHHHHHHHCCCEEEEeCC-C-CHHHHHHHhHhcCCCEEEEECcCchhC
Confidence 5799999999999999872 1 35678999999999999999999998 5 999999999999999999999999999
Q ss_pred CcEEEEEccCCCccccccchHHHHHHHHH
Q 010413 385 NQVRAVRRDNGAKVDLPRSSLVERIKELL 413 (511)
Q Consensus 385 ~~Vtvr~r~~~ek~~v~~~el~~~i~~~l 413 (511)
++|+|++++++++..++++++.+.+.+++
T Consensus 92 ~~v~lk~l~~~~~~~v~l~~l~~~l~~~~ 120 (121)
T cd00858 92 GTVTIRERDSMRQVRVKIEELPSYLRELI 120 (121)
T ss_pred CEEEEEECCCCceEEEEHHHHHHHHHHHh
Confidence 99999999999999999998877776553
No 60
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=99.72 E-value=4.2e-18 Score=142.97 Aligned_cols=93 Identities=32% Similarity=0.487 Sum_probs=87.3
Q ss_pred eEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeeecCCCCCCCCCCCCcccccCceeEeeeCcccccCCcEEEEEccC
Q 010413 315 QVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDN 394 (511)
Q Consensus 315 qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~~lg~k~~~ae~~giP~~iivG~~E~e~~~Vtvr~r~~ 394 (511)
||+|+|++.++ ++..++|.+|++.|+++||+|++|+++ .++|+||++|++.|+||+|+||++|+++++|+|++|++
T Consensus 1 qv~Ii~~~~~~---~~~~~~a~~l~~~L~~~gi~v~~d~~~-~~~~k~~~~a~~~g~p~~iiiG~~e~~~~~v~vk~~~~ 76 (94)
T PF03129_consen 1 QVVIIPVGKKD---EEIIEYAQELANKLRKAGIRVELDDSD-KSLGKQIKYADKLGIPFIIIIGEKELENGTVTVKDRDT 76 (94)
T ss_dssp SEEEEESSCSH---HHHHHHHHHHHHHHHHTTSEEEEESSS-STHHHHHHHHHHTTESEEEEEEHHHHHTTEEEEEETTT
T ss_pred CEEEEEeCCCc---HHHHHHHHHHHHHHHHCCCEEEEECCC-CchhHHHHHHhhcCCeEEEEECchhHhCCEEEEEECCC
Confidence 79999999642 578899999999999999999999987 69999999999999999999999999999999999999
Q ss_pred CCccccccchHHHHHHH
Q 010413 395 GAKVDLPRSSLVERIKE 411 (511)
Q Consensus 395 ~ek~~v~~~el~~~i~~ 411 (511)
+++..|+++++++.|++
T Consensus 77 ~~~~~v~~~el~~~l~~ 93 (94)
T PF03129_consen 77 GEQETVSLEELIEYLKE 93 (94)
T ss_dssp TEEEEEECCHHHHHHHH
T ss_pred CcEEEEEHHHHHHHHhh
Confidence 99999999999998875
No 61
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=5.4e-18 Score=179.86 Aligned_cols=157 Identities=25% Similarity=0.419 Sum_probs=144.1
Q ss_pred cccccccccccccccccceeeEEeCCCCceeeeeeecccc-ccceeeEEEEEeeCCCCcccCCcccceeEEEEeeccCcc
Q 010413 248 RGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAY-TTRTIGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYKDA 326 (511)
Q Consensus 248 r~lq~gt~~~lg~~~s~~f~i~y~~~~g~~~~v~~~~~Gi-~eRli~~Lie~~~d~~G~~lP~~laP~qV~Iipi~~~~~ 326 (511)
++.++|++|+||.++++.++.++.+.+|+.++.++.|||+ ++|++++++|++.|++|+.||..+||++|.|++++.++
T Consensus 340 e~ieVghif~lG~kyse~~~a~v~~r~g~~~~~~mg~ygigvsr~v~a~ieq~~d~~gi~w~~a~apf~~~iv~~n~~~- 418 (500)
T COG0442 340 EGIEVGHIFELGTKYSEAMNATVLDRDGKEQPKTMGCYGIGVSRLVAALLEQIHDENGIIWPKAIAPFDVHIVPVNTKD- 418 (500)
T ss_pred eccccCEEEEECchhhhhCeeEEEecCCCccceEEEehhhhhhhHHHHHHHHhcccccCccccccCcceeEEEEcCchh-
Confidence 4567999999999999999999999999999999999999 99999999999999999999999999999999998642
Q ss_pred chhHHHHHHHHHHHHHHHcC-ceeeecCCCCCCCCCCCCcccccCceeEeeeCcccccCCcEEEEEccCCCccccccchH
Q 010413 327 DTQGIFDACTATVETLCEAG-ICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSL 405 (511)
Q Consensus 327 ~~~~~~~~a~~i~~~Lr~~G-irv~~D~~~~~~lg~k~~~ae~~giP~~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~el 405 (511)
......+.+++..|...| ..|.+|+++ .++|.++.+|+++|+|+.+++|++ .+++.|.++.|.+|++..++...+
T Consensus 419 --~~~~~~~~~~~~~l~~~G~~e~~~ddr~-er~g~k~~~a~liGiP~~~~~g~~-~~~g~~e~k~r~~ge~~~~~~~~l 494 (500)
T COG0442 419 --FKQAEAAEKLYVELPWCGTVEVLLDDRD-ERPGVKFADADLIGIPLRIVVGKR-LAEGEVEVKCRKCGEKEAVTIEAL 494 (500)
T ss_pred --HHHHHHhhhHHHHHHhCCchhhhhhhhc-cccCccccCCeEecccceeeeccc-ccCCceeEEecCCCchhhccHHHH
Confidence 456677889999999999 999999998 499999999999999999999999 889999999999999988887777
Q ss_pred HHHH
Q 010413 406 VERI 409 (511)
Q Consensus 406 ~~~i 409 (511)
++.+
T Consensus 495 ~~~~ 498 (500)
T COG0442 495 FARL 498 (500)
T ss_pred HHHh
Confidence 6654
No 62
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.70 E-value=4.1e-17 Score=136.71 Aligned_cols=93 Identities=27% Similarity=0.459 Sum_probs=85.0
Q ss_pred ceeEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeeecCCCCCCCCCCCCcccccCceeEeeeCcccccCCcEEEEEc
Q 010413 313 SVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRR 392 (511)
Q Consensus 313 P~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~~lg~k~~~ae~~giP~~iivG~~E~e~~~Vtvr~r 392 (511)
|+||+|+|+..++ ++..++|.+|+..||++|++|++|++. .++|+++++|++.|+|++|+||++|+++++|+|++|
T Consensus 1 P~qv~i~p~~~~~---~~~~~~a~~la~~Lr~~g~~v~~d~~~-~~l~k~i~~a~~~g~~~~iiiG~~e~~~~~v~vk~~ 76 (94)
T cd00861 1 PFDVVIIPMNMKD---EVQQELAEKLYAELQAAGVDVLLDDRN-ERPGVKFADADLIGIPYRIVVGKKSAAEGIVEIKVR 76 (94)
T ss_pred CeEEEEEEcCCCc---HHHHHHHHHHHHHHHHCCCEEEEECCC-CCcccchhHHHhcCCCEEEEECCchhhCCEEEEEEC
Confidence 8999999998531 457789999999999999999999997 599999999999999999999999999999999999
Q ss_pred cCCCccccccchHHHHH
Q 010413 393 DNGAKVDLPRSSLVERI 409 (511)
Q Consensus 393 ~~~ek~~v~~~el~~~i 409 (511)
+++++..++++++.+.+
T Consensus 77 ~~~~~~~~~~~~~~~~l 93 (94)
T cd00861 77 KTGEKEEISIDELLEFL 93 (94)
T ss_pred CCCcceEEeHHHHHHhh
Confidence 99999999998886544
No 63
>PRK14938 Ser-tRNA(Thr) hydrolase; Provisional
Probab=99.68 E-value=1.1e-17 Score=170.40 Aligned_cols=116 Identities=23% Similarity=0.311 Sum_probs=102.6
Q ss_pred ccceeeEEEEEeeCCCCcccCCcccceeEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeeecCCCCCCCCCCCCccc
Q 010413 288 TTRTIGVMVMVHGDDKGLVLPPRVASVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWE 367 (511)
Q Consensus 288 ~eRli~~Lie~~~d~~G~~lP~~laP~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~~lg~k~~~ae 367 (511)
++|++.+++.+-..+.-+.||+|+||.||+|+|++ ++..++|.+|++.||++|++|++|+++ .++|+++++|+
T Consensus 249 ~~r~~~~~L~~a~~e~~~~LPpwLAP~qV~IIpl~------eel~e~AlkLA~eLR~aGIrVeiDl~s-rSLgKQiK~Ad 321 (387)
T PRK14938 249 VGLLVYYFLLESIRKQPPTLPDWLNPIQVRILPVK------KDFLDFSIQVAERLRKEGIRVNVDDLD-DSLGNKIRRAG 321 (387)
T ss_pred ecHHHHHHHHHhhhHHhCcCCCccCcceEEEEEeC------hHHHHHHHHHHHHHHHCCCEEEEECCC-CCHHHHHHHHH
Confidence 68887776554333346799999999999999997 346789999999999999999999987 69999999999
Q ss_pred ccCceeEeeeCcccccCCcEEEEEccCCCccccccchHHHHHH
Q 010413 368 MKGVPLRIEIGPKDLAKNQVRAVRRDNGAKVDLPRSSLVERIK 410 (511)
Q Consensus 368 ~~giP~~iivG~~E~e~~~Vtvr~r~~~ek~~v~~~el~~~i~ 410 (511)
+.|+|++|+||++|+++|+|+|++|++++|..++++++.+.+.
T Consensus 322 K~GaPfvIIIGedEle~gtVtIKdrdTgEQ~~IsLdELie~Lk 364 (387)
T PRK14938 322 TEWIPFVIIIGEREVKTSTLTVKIRANNEQKSMTVEELVKEIK 364 (387)
T ss_pred HcCCCEEEEECchhhhCCeEEEEECCCCceEEEeHHHHHHHHH
Confidence 9999999999999999999999999999999999998876665
No 64
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.66 E-value=1.5e-16 Score=165.61 Aligned_cols=128 Identities=13% Similarity=0.064 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhhhhhc
Q 010413 71 WETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRG 150 (511)
Q Consensus 71 ~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~~s 150 (511)
.+.|.+.+++.|+++||++|.||+|++.++|...+|. ...++||.|.|.+ ++.++|||+.|+++++++... .
T Consensus 7 ~~~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~--~~~~~~~~f~D~~----G~~l~LRpD~T~piaR~~~~~-~- 78 (373)
T PRK12295 7 SAAAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGE--DIRRRIFVTSDEN----GEELCLRPDFTIPVCRRHIAT-A- 78 (373)
T ss_pred HHHHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCc--hhhcceEEEECCC----CCEEeeCCCCcHHHHHHHHHc-C-
Confidence 3589999999999999999999999999999655553 3457899999987 489999999999999987654 2
Q ss_pred CCCCccccccccceEeeeecCCCCcccchhhhcccCccccc-ChhhhHHHHHHHHHHHHHHHhhhhc
Q 010413 151 HRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFA-TKSEADDEVLQILELYRRIYEEFLA 216 (511)
Q Consensus 151 ~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~-~~e~a~~e~~~~l~~~~~i~~~lg~ 216 (511)
...|+|+||+|+|||+| .| |.|||+|.++++++. +...+|+|++.++ .++++.+|.
T Consensus 79 -~~~p~R~~Y~g~VfR~~----~g--r~rEf~Q~GvEiiG~~~~~~aDaEvi~l~---~~~L~~lgl 135 (373)
T PRK12295 79 -GGEPARYAYLGEVFRQR----RD--RASEFLQAGIESFGRADPAAADAEVLALA---LEALAALGP 135 (373)
T ss_pred -CCCCeEEEEEccEEECC----CC--CCCcceEeeEEeeCCCCCccchHHHHHHH---HHHHHHcCC
Confidence 35799999999999999 46 999999999999996 4568899987776 788888873
No 65
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.56 E-value=3.9e-15 Score=123.65 Aligned_cols=90 Identities=26% Similarity=0.451 Sum_probs=82.7
Q ss_pred ceeEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeeecCCCCCCCCCCCCcccccCceeEeeeCcccccCCcEEEEEc
Q 010413 313 SVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRR 392 (511)
Q Consensus 313 P~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~~lg~k~~~ae~~giP~~iivG~~E~e~~~Vtvr~r 392 (511)
|+||+|+|.+ +...++|.++++.||+.|++|++|++. .++|+++++|+++|+|++|+||++|+++++++++++
T Consensus 1 p~~v~ii~~~------~~~~~~a~~~~~~Lr~~g~~v~~d~~~-~~~~~~~~~a~~~g~~~~iiig~~e~~~~~v~lk~~ 73 (91)
T cd00860 1 PVQVVVIPVT------DEHLDYAKEVAKKLSDAGIRVEVDLRN-EKLGKKIREAQLQKIPYILVVGDKEVETGTVSVRTR 73 (91)
T ss_pred CeEEEEEeeC------chHHHHHHHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHcCCCEEEEECcchhhCCEEEEEEC
Confidence 7899999987 356789999999999999999999987 699999999999999999999999999999999999
Q ss_pred cCCCccccccchHHHHH
Q 010413 393 DNGAKVDLPRSSLVERI 409 (511)
Q Consensus 393 ~~~ek~~v~~~el~~~i 409 (511)
.++++..++++++++.+
T Consensus 74 ~~~~~~~~~~~~~~~~~ 90 (91)
T cd00860 74 DGGDLGSMSLDEFIEKL 90 (91)
T ss_pred CCCccceEcHHHHHHHh
Confidence 99999999888876544
No 66
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=99.52 E-value=9.6e-15 Score=150.44 Aligned_cols=146 Identities=15% Similarity=0.102 Sum_probs=127.1
Q ss_pred eeeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecC
Q 010413 55 YDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRP 134 (511)
Q Consensus 55 ~~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRP 134 (511)
..+.|+.|.+|..+...+.|.+.+.+.|.+.||+.|.||+|++.+.|....|+ .-...+|.++|.. ++.++|||
T Consensus 4 ~lp~g~rd~Lp~e~~~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~~l~~~g~--~l~~~~f~l~d~~----g~~l~LRp 77 (390)
T COG3705 4 QLPEGIRDVLPLEARRKEEIRDQLLALFRAWGYERVETPTLEPADPLLDGAGE--DLRRRLFKLEDET----GGRLGLRP 77 (390)
T ss_pred cCCCcchhcchhHHhhHHHHHHHHHHHHHHhCCccccccccchhhhhhhccch--hhhhhheEEecCC----CCeEEecc
Confidence 36889999999999999999999999999999999999999999999654454 3357899999877 47799999
Q ss_pred CCccccchhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhh
Q 010413 135 TSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 214 (511)
Q Consensus 135 t~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~l 214 (511)
+.|+++++++.....+ .|.|++|.|+|||.. ++..| |..||+|.+++.++.+...||+|++.++ ..+++.+
T Consensus 78 D~T~pVaR~~~~~~~~---~P~Rl~Y~G~Vfr~~-~~~~g--~~~Ef~QaGiEllG~~~~~ADaEvi~la---~~~L~~~ 148 (390)
T COG3705 78 DFTIPVARIHATLLAG---TPLRLSYAGKVFRAR-EGRHG--RRAEFLQAGIELLGDDSAAADAEVIALA---LAALKAL 148 (390)
T ss_pred cccHHHHHHHHHhcCC---CCceeeecchhhhcc-hhccC--cccchhhhhhHHhCCCcchhhHHHHHHH---HHHHHHc
Confidence 9999999998887654 899999999999998 55667 8889999999999999999999987665 5666666
Q ss_pred h
Q 010413 215 L 215 (511)
Q Consensus 215 g 215 (511)
|
T Consensus 149 g 149 (390)
T COG3705 149 G 149 (390)
T ss_pred C
Confidence 5
No 67
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=99.49 E-value=4.5e-14 Score=117.85 Aligned_cols=92 Identities=24% Similarity=0.390 Sum_probs=82.6
Q ss_pred ceeEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeeecCCCCCCCCCCCCcccccCceeEeeeCcccccCCcEEEEEc
Q 010413 313 SVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRR 392 (511)
Q Consensus 313 P~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~~lg~k~~~ae~~giP~~iivG~~E~e~~~Vtvr~r 392 (511)
|+||+|+|++.+. +....+|..+++.||++|++|++|++. .++++++++|++.|+|++++||++|+++++|++++|
T Consensus 1 p~~v~ii~~~~~~---~~~~~~a~~~~~~Lr~~g~~v~~~~~~-~~~~k~~~~a~~~g~~~~iiig~~e~~~~~v~i~~~ 76 (94)
T cd00738 1 PIDVAIVPLTDPR---VEAREYAQKLLNALLANGIRVLYDDRE-RKIGKKFREADLRGVPFAVVVGEDELENGKVTVKSR 76 (94)
T ss_pred CeEEEEEECCCCc---HHHHHHHHHHHHHHHHCCCEEEecCCC-cCHhHHHHHHHhCCCCEEEEECCChhhCCEEEEEEC
Confidence 7899999987311 257889999999999999999999987 699999999999999999999999999999999999
Q ss_pred cCCCccccccchHHHH
Q 010413 393 DNGAKVDLPRSSLVER 408 (511)
Q Consensus 393 ~~~ek~~v~~~el~~~ 408 (511)
+++++..++++++.+.
T Consensus 77 ~~~~~~~~~~~~~~~~ 92 (94)
T cd00738 77 DTGESETLHVDELPEF 92 (94)
T ss_pred CCCceeEEEHHHHHhh
Confidence 9999999998887654
No 68
>PRK07080 hypothetical protein; Validated
Probab=99.42 E-value=2.3e-13 Score=135.28 Aligned_cols=252 Identities=15% Similarity=0.154 Sum_probs=172.3
Q ss_pred hhhHHHhhhccceeeeeeeceeEEeccchHHHHHHHHHHHHHHHHhcc----eeeeeeecccChhhhhhhhhcccCCCcc
Q 010413 39 GEWYSEVVVNGEMIEYYDISGCYIIRPWAMSIWETMQKFFDAEIKKMK----IQNCYFPLFVSPTVLQKEKDHIEGFAPE 114 (511)
Q Consensus 39 ~~~~~~~~~~a~~~d~~~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G----~~ev~tP~l~~~~l~~~~sg~~~~f~~e 114 (511)
....++|+ .++++-...+.|.|-.-+ +++.|.+.+...+.++| ++++.+|-+.+.+.|. .++++++|-..
T Consensus 19 ~~~~~~l~-~~g~~~~~g~~g~ygrs~----~fe~v~~~ld~~i~~lg~~~~~e~~~FPpl~~~~~~e-k~~Y~ksFP~l 92 (317)
T PRK07080 19 NDFRDELF-DAGLLIPTGVDGLYGRSG----LFEDVVEALDALITRLGADQGAEVLRFPPVMSRAEFE-RSGYLKSFPQL 92 (317)
T ss_pred hhHHHHHH-hcCceeccCCCccccccH----HHHHHHHHHHHHHHHhccccCCceeeCCCCCCHHHHH-hcChhhhCccc
Confidence 44556644 555554446788875544 45555555555555555 9999999999999996 69999999888
Q ss_pred eeeEeccCC-------------------CC-CCCceeecCCCccccchhhhhh-hhcCCCCccccccccceEeeeecCCC
Q 010413 115 VAWVTKSGE-------------------SD-LEVPIAIRPTSETVMYPYYSKW-IRGHRDLPLKLNQWCNVVRWEFSNPT 173 (511)
Q Consensus 115 my~~~~~g~-------------------~~-l~~~l~LRPt~e~~~~~~~~~~-~~s~r~LPlkl~q~g~vfR~E~~~~~ 173 (511)
|+.+..-.+ +. ....++|.|..|.+++.++.+. ...- +- ..+--.|.|||+|. ..
T Consensus 93 ~~~V~~~~g~~~e~~~ll~~~~~~~~~~~~l~~~~~vL~pAaCyP~Yp~l~~~g~lp~-~g-~~~dv~g~CFR~E~--s~ 168 (317)
T PRK07080 93 AGTVHSFCGNEAEHRRLLACLDRGEDWTESQKPTDVVLTPAACYPVYPVLARRGALPA-DG-RLVDVASYCFRHEP--SL 168 (317)
T ss_pred ceeecCCCCCCHHHHHHHHHHHhcCchhhhcCCCcceecccccccchhhhccCcccCC-CC-cEEEeeeeeeccCC--CC
Confidence 886643211 01 1247899999999999988764 2221 11 34455799999994 46
Q ss_pred CcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhhhccccccccccccccccCc----------cceeeEEEee
Q 010413 174 PFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELEKFAGG----------LYTTTVEAFI 243 (511)
Q Consensus 174 Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~lg~ip~~~g~~~~~ek~~ga----------~y~~~ie~~~ 243 (511)
++-|+.+|+|-|.-.++ +++++.+--...++....+.+.|+ +++.+-..+ |-|.|. ....+.|.++
T Consensus 169 dl~Rl~~F~mrE~V~iG-t~e~v~~~r~~w~e~~~~l~~~Lg-L~~~ve~An--DPFF~~~gk~~a~~Qr~~~lKfEl~v 244 (317)
T PRK07080 169 DPARMQLFRMREYVRIG-TPEQIVAFRQSWIERGTAMADALG-LPVEIDLAN--DPFFGRGGKIVAASQREQNLKFELLI 244 (317)
T ss_pred CcHHHhheeeeEEEEec-CHHHHHHHHHHHHHHHHHHHHHhC-CceeEeecC--CccccccchhhhhhhhhccceeEEEE
Confidence 88999999999999866 777775554555677777778887 776543322 112211 1235677777
Q ss_pred c--CCCcccccccccccccccccceeeEEeCCCCceeeeeeecccc-ccceeeEEEEEeeCCCCcccCC
Q 010413 244 P--NTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAY-TTRTIGVMVMVHGDDKGLVLPP 309 (511)
Q Consensus 244 p--~~gr~lq~gt~~~lg~~~s~~f~i~y~~~~g~~~~v~~~~~Gi-~eRli~~Lie~~~d~~G~~lP~ 309 (511)
| +..++.-|+++.+=++.|+++|+|+.. +|. ++|+.|.|+ +||+..+|+.+||.|.. .||.
T Consensus 245 pi~~~~~~tA~~S~NyH~dhFg~~f~I~~~--~g~--~ahTgCvGFGlER~a~All~~hG~d~~-~WP~ 308 (317)
T PRK07080 245 PIYSDAPPTACMSFNYHMDHFGLTWGIRTA--DGA--VAHTGCVGFGLERLALALFRHHGLDPA-AWPA 308 (317)
T ss_pred ecCCCCCceEEEEEehhhhccccccCcccC--CCC--EeEEeeeecCHHHHHHHHHHHhCCChh-hccH
Confidence 5 334566666665457889999998643 343 899998888 99999999999964321 4554
No 69
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=99.40 E-value=4.4e-13 Score=139.15 Aligned_cols=136 Identities=13% Similarity=0.121 Sum_probs=105.9
Q ss_pred hHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhccc--CCCcceeeEeccCCCCCCCceeecCCCccccchhh
Q 010413 67 AMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIE--GFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYY 144 (511)
Q Consensus 67 g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~--~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~ 144 (511)
.-.-++.|++.+++.|..+||+||.||+|++.+.+++ .++.+ .+.++||.+. +.++|||+.++.+.+++
T Consensus 238 ~~~~~~~Led~IRevfvg~GFqEV~TPtLt~eE~~E~-m~~~~g~eI~n~Iyk~e--------e~lvLRPdLTPsLaR~L 308 (453)
T TIGR02367 238 REDYLGKLERDITKFFVDRGFLEIKSPILIPAEYIER-MGIDNDTELSKQIFRVD--------KNFCLRPMLAPNLYNYL 308 (453)
T ss_pred cccHHHHHHHHHHHHHHHCCCEEEECCeecchHHHHh-hcCccCCcccccceEec--------CceEecccCHHHHHHHH
Confidence 3456899999999999999999999999988777743 44332 3566888763 46899999999998877
Q ss_pred hhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhhhcccccc
Q 010413 145 SKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIK 221 (511)
Q Consensus 145 ~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~lg~ip~~~ 221 (511)
++..+ ...+|+|+|++|+|||+| .++.+ |+|||+|.++.+++.....++.+ .+ ...+++.|| +.|.+
T Consensus 309 a~N~~-~l~~PqKIFEIGkVFR~E-~~~~t--hlREF~QL~~eIaG~~atfaDle--al---L~e~Lr~LG-Idfei 375 (453)
T TIGR02367 309 RKLDR-ALPDPIKIFEIGPCYRKE-SDGKE--HLEEFTMLNFCQMGSGCTRENLE--AI---IKDFLDHLE-IDFEI 375 (453)
T ss_pred HHhhh-hccCCeeEEEEcCeEecC-CCCCC--CcCeEEEEEEEEECCCCCHHHHH--HH---HHHHHHHCC-CceEE
Confidence 65432 246899999999999999 45778 99999999999988766555433 33 478888888 55544
No 70
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=99.30 E-value=2.8e-12 Score=133.62 Aligned_cols=147 Identities=10% Similarity=0.082 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhccc--CCCcceeeEeccCCCCCCCceeecCCCccccchhhhhhh
Q 010413 71 WETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIE--GFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWI 148 (511)
Q Consensus 71 ~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~--~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~ 148 (511)
+..|++.+++.+..+||+||.||+|++.+.|. ..++.. .+.++||.+. +.++|||+.+++++.+++..
T Consensus 206 ~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~~e-~~g~~~g~~i~~~my~id--------eel~LRpsLtPsLlr~la~n- 275 (417)
T PRK09537 206 LGKLERDITKFFVDRGFLEIKSPILIPAEYIE-RMGIDNDTELSKQIFRVD--------KNFCLRPMLAPGLYNYLRKL- 275 (417)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeeecHHHHH-HhCCCCcccchhhheeeC--------CceEehhhhHHHHHHHHHhh-
Confidence 78899999999999999999999999988884 456542 3456787752 57899999999988877644
Q ss_pred hcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhhhccccccccccccc
Q 010413 149 RGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELE 228 (511)
Q Consensus 149 ~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~lg~ip~~~g~~~~~e 228 (511)
.++.++|+|+|++|+|||+|. ++.+ ++|||+|.++.+++.... .++ +..+..++|+.|| ++|.+.. .
T Consensus 276 ~k~~~~P~RIFEIG~VFR~E~-~g~~--hlrEf~Ql~~~iiGs~~~--f~d---L~~lleeLL~~LG-I~f~i~s---~- 342 (417)
T PRK09537 276 DRILPDPIKIFEIGPCYRKES-DGKE--HLEEFTMVNFCQMGSGCT--REN---LENIIDDFLKHLG-IDYEIIG---D- 342 (417)
T ss_pred hhcccCCeeEEEEeceEecCC-CCCC--CcceEEEEEEEEeCCchH--HHH---HHHHHHHHHHHCC-CCcEEec---C-
Confidence 334578999999999999995 4556 999999999998654322 233 3455689999998 6765431 1
Q ss_pred cccCccceeeEEEe
Q 010413 229 KFAGGLYTTTVEAF 242 (511)
Q Consensus 229 k~~ga~y~~~ie~~ 242 (511)
....|++..+.+
T Consensus 343 --~~fi~GR~adI~ 354 (417)
T PRK09537 343 --NCMVYGDTIDIM 354 (417)
T ss_pred --CcceecCeEEEE
Confidence 123455665554
No 71
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.19 E-value=3.5e-11 Score=120.05 Aligned_cols=124 Identities=10% Similarity=0.018 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhhh
Q 010413 68 MSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKW 147 (511)
Q Consensus 68 ~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~ 147 (511)
..-.+.|++.+++.|+++||++|.||+|+..+++. .+++ +.....++.+.+.+ ++.++|||+.|++++++++..
T Consensus 7 ~~~~~~ie~~l~~~f~~~GY~~I~tP~~E~~d~~~-~~~~-~~~~~~~~~~~~~~----Gr~laLRpD~T~~iAR~~a~~ 80 (272)
T PRK12294 7 LIALKESETAFLKYFNKADYELVDFSVIEKLDWKQ-LNHE-DLQQMGERSFWQHE----HQIYALRNDFTDQLLRYYSMY 80 (272)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEeeCCcchhHHhhh-cccc-chhhhheeeeecCC----CCEEEEcCCCCHHHHHHHHhc
Confidence 34568899999999999999999999999999973 2332 11122234455544 599999999999999988754
Q ss_pred hhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhhh
Q 010413 148 IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFL 215 (511)
Q Consensus 148 ~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~lg 215 (511)
. .-|.|++|+|+|||++ + +|+|.+++++++. .+++.|...+ ..+.+.++|
T Consensus 81 ~----~~~~Rl~Y~g~VfR~~-~---------~~~Q~GvEliG~~-~~a~~e~l~l---a~~~l~~~g 130 (272)
T PRK12294 81 P----TAATKVAYAGLIIRNN-E---------AAVQVGIENYAPS-LANVQQSFKL---FIQFIQQQL 130 (272)
T ss_pred C----CCCceEEEeccEeccC-C---------CcceeceEEECCC-chhHHHHHHH---HHHHHHHhC
Confidence 2 2467999999999998 2 2899999999855 5666666544 356666664
No 72
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.14 E-value=5.2e-11 Score=97.92 Aligned_cols=88 Identities=24% Similarity=0.356 Sum_probs=78.3
Q ss_pred eEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeeecCCCCCCCCCCCCcccccCceeEeeeCcccccCCcEEEEEccC
Q 010413 315 QVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDN 394 (511)
Q Consensus 315 qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~~lg~k~~~ae~~giP~~iivG~~E~e~~~Vtvr~r~~ 394 (511)
+|+|+|.+ ++...+|.++++.||++|++|+++... .++++++.+|+..|+|+++++|+++..+++++++++++
T Consensus 3 ~v~i~~~~------~~~~~~a~~i~~~Lr~~g~~v~~~~~~-~~~~~~~~~a~~~~~~~~i~i~~~~~~~~~~~i~~~~~ 75 (91)
T cd00859 3 DVYVVPLG------EGALSEALELAEQLRDAGIKAEIDYGG-RKLKKQFKYADRSGARFAVILGEDELAAGVVTVKDLET 75 (91)
T ss_pred cEEEEEcC------hHHHHHHHHHHHHHHHCCCEEEEecCC-CCHHHHHHHHHHcCCCEEEEEcHHHHhCCcEEEEECCC
Confidence 68888877 346688999999999999999999876 58999999999999999999999999999999999999
Q ss_pred CCccccccchHHHHH
Q 010413 395 GAKVDLPRSSLVERI 409 (511)
Q Consensus 395 ~ek~~v~~~el~~~i 409 (511)
+++..++++++.+.+
T Consensus 76 ~~~~~~~~~~~~~~~ 90 (91)
T cd00859 76 GEQETVALDELVEEL 90 (91)
T ss_pred CCcEEEeHHHHHHHh
Confidence 998888887775543
No 73
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=99.04 E-value=2e-10 Score=124.33 Aligned_cols=142 Identities=13% Similarity=0.070 Sum_probs=104.9
Q ss_pred eceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccCh-------------------hhhhhhhhcccCC-Ccc--
Q 010413 57 ISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSP-------------------TVLQKEKDHIEGF-APE-- 114 (511)
Q Consensus 57 ~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~-------------------~l~~~~sg~~~~f-~~e-- 114 (511)
.+| ++++|.....++.+++.+++.|..+||+++.+|++++. +.|..+.+..... .+.
T Consensus 222 ~~~-~~~~~~~~~~~~~~~~~~~~~f~~~Gf~e~~~p~vE~~~~nfd~lf~p~~hpaR~~~dtf~~~~~~~~~~~~~~~~ 300 (489)
T PRK04172 222 APP-PKIYPGKKHPYREFIDEVRDILVEMGFEEMKGPLVETEFWNFDALFQPQDHPAREMQDTFYLKYPGIGDLPEELVE 300 (489)
T ss_pred CCC-CCCCCCCCChHHHHHHHHHHHHHHCCCEEeeCCeeeecCcccccccCCCCCCCCCccceEEECCcccccCcHHHHH
Confidence 456 89999999999999999999999999999999999954 3332211110000 011
Q ss_pred -----------------eeeEeccCCCCCCCceeecCCCccccchhhhhhhhcCCCCccccccccceEeeeecCCCCccc
Q 010413 115 -----------------VAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIR 177 (511)
Q Consensus 115 -----------------my~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R 177 (511)
+|.+.+.+ .+.++|||..++++++++.. +...|+|+|++|+|||+|. ++.+ |
T Consensus 301 ~v~~~he~g~~~~~~~~~y~~~~~~----~~~~~LR~~~T~~~~r~l~~----~~~~p~rlFeiGrVFR~e~-~d~~--~ 369 (489)
T PRK04172 301 RVKEVHEHGGDTGSRGWGYKWDEDI----AKRLVLRTHTTALSARYLAS----RPEPPQKYFSIGRVFRPDT-IDAT--H 369 (489)
T ss_pred HHHHHHhccCCCCCccccCCcchhh----hhccccccCChHHHHHHHHh----cCCCCeEEEEecceEcCCC-CCcc--c
Confidence 34444333 47899999999999888776 2368999999999999994 4667 7
Q ss_pred chhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhhh
Q 010413 178 SREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFL 215 (511)
Q Consensus 178 ~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~lg 215 (511)
+|||+|.++.+++.... ..++ ..+...++..+|
T Consensus 370 l~Ef~ql~~~i~G~~~~--f~el---kg~l~~ll~~lG 402 (489)
T PRK04172 370 LPEFYQLEGIVMGEDVS--FRDL---LGILKEFYKRLG 402 (489)
T ss_pred CCchheEEEEEEeCCCC--HHHH---HHHHHHHHHHhC
Confidence 89999999999776322 3344 445588888887
No 74
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=98.86 E-value=6.2e-09 Score=110.79 Aligned_cols=184 Identities=14% Similarity=0.085 Sum_probs=116.8
Q ss_pred eceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhh-----hhhhcccCCCcceeeEeccCC--------
Q 010413 57 ISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQ-----KEKDHIEGFAPEVAWVTKSGE-------- 123 (511)
Q Consensus 57 ~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~-----~~sg~~~~f~~emy~~~~~g~-------- 123 (511)
.+| ....+-...-...+.+.+++.|...||+++.+|-.+-.+.|. --..|-..=..+-|++.+...
T Consensus 218 ~~~-~~~~~g~~HPl~~~~~~i~~if~~mGF~e~~~~~~ves~f~NFDaL~~PqdHPARd~~DTFyl~~~~~~~~~~~p~ 296 (494)
T PTZ00326 218 ALG-KKIGGGNLHPLLKVRREFREILLEMGFEEMPTNRYVESSFWNFDALFQPQQHPARDAQDTFFLSKPETSKVNDLDD 296 (494)
T ss_pred CCC-CCCCCCCCChHHHHHHHHHHHHHhCCCEEecCCCCccccchhhhhhcCCCCCCCCCcCceEEEcCccccccccCcH
Confidence 455 444555667788999999999999999999988444445441 011121111123465643100
Q ss_pred -------------------------CCCCCceeecCCCccccchhhhhhhhcC---CC-CccccccccceEeeeecCCCC
Q 010413 124 -------------------------SDLEVPIAIRPTSETVMYPYYSKWIRGH---RD-LPLKLNQWCNVVRWEFSNPTP 174 (511)
Q Consensus 124 -------------------------~~l~~~l~LRPt~e~~~~~~~~~~~~s~---r~-LPlkl~q~g~vfR~E~~~~~G 174 (511)
.+....++||+..++..++++......+ .. .|+|++++|+|||+|. +..+
T Consensus 297 ~~~~~Vk~~He~G~~gS~Gw~y~W~~e~a~~~vLRtHtTa~~aR~l~~~~~~~~~~~~~~P~k~fsigrVfR~d~-~Dat 375 (494)
T PTZ00326 297 DYVERVKKVHEVGGYGSIGWRYDWKLEEARKNILRTHTTAVSARMLYKLAQEYKKTGPFKPKKYFSIDRVFRNET-LDAT 375 (494)
T ss_pred HHHHHHHHHhccCCcCCcccccccccchhccccccCCCCHHHHHHHHhhccccccccCCCCceEEecCCEecCCC-CCCC
Confidence 0012478999999998888888764431 12 3999999999999994 5778
Q ss_pred cccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhhhccccccccccccccccCccceeeEEE--eecCCCccccc
Q 010413 175 FIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTVEA--FIPNTGRGIQG 252 (511)
Q Consensus 175 l~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~lg~ip~~~g~~~~~ek~~ga~y~~~ie~--~~p~~gr~lq~ 252 (511)
|++||+|.|+.+++... +.++++.++ ..+|+.+|...++ .++ .-| .+--|.+|. +.|.+|+.+++
T Consensus 376 --H~~eFhQ~Eg~vi~~~~--s~~~L~~~l---~~f~~~lG~~~~R--frP--~yf--PfTEPS~Ev~v~~~~~gkWIEI 442 (494)
T PTZ00326 376 --HLAEFHQVEGFVIDRNL--TLGDLIGTI---REFFRRIGITKLR--FKP--AFN--PYTEPSMEIFGYHPGLKKWVEV 442 (494)
T ss_pred --cCceeEEEEEEEEeCCC--CHHHHHHHH---HHHHHhcCCCceE--Eec--CCC--CCCCCeeEEEEEecCCCcEEEE
Confidence 99999999999976554 556665554 7888888732111 111 011 112255554 45777777886
Q ss_pred ccc
Q 010413 253 ATS 255 (511)
Q Consensus 253 gt~ 255 (511)
+.+
T Consensus 443 gg~ 445 (494)
T PTZ00326 443 GNS 445 (494)
T ss_pred eCc
Confidence 553
No 75
>PRK09350 poxB regulator PoxA; Provisional
Probab=98.76 E-value=1.3e-08 Score=103.63 Aligned_cols=119 Identities=14% Similarity=0.071 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeec--CCCccccchhh
Q 010413 67 AMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIR--PTSETVMYPYY 144 (511)
Q Consensus 67 g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LR--Pt~e~~~~~~~ 144 (511)
-.+++..|.+.+|+.|.+.||.||.||+|+..... ..+...|..+ |.+.+... ++.++|+ |+.+ +.++
T Consensus 4 ~l~~r~~i~~~ir~~f~~~gf~EV~TP~l~~~~~~---~~~~~~f~~~-y~~~~~~~---~~~~~L~~SPe~~--~kr~- 73 (306)
T PRK09350 4 NLLKRAKIIAEIRRFFADRGVLEVETPILSQATVT---DIHLVPFETR-FVGPGASQ---GKTLWLMTSPEYH--MKRL- 73 (306)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeEecccCC---CccCCceeee-eccccccC---CcceEEecCHHHH--HHHH-
Confidence 35789999999999999999999999999875443 2233334333 44433221 4788998 6543 2222
Q ss_pred hhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHH
Q 010413 145 SKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 204 (511)
Q Consensus 145 ~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l 204 (511)
+.+. +. |+||+|+|||+|.+ +.+ +..||+|.|++.++.+-++....+..++
T Consensus 74 ---la~~--~~-rvf~i~~~FR~e~~-~~~--H~~EFt~lE~y~~~~d~~dlm~~~E~li 124 (306)
T PRK09350 74 ---LAAG--SG-PIFQICKSFRNEEA-GRY--HNPEFTMLEWYRPHYDMYRLMNEVDDLL 124 (306)
T ss_pred ---hhcc--cc-ceEEecceeecCCC-CCC--CCcHHHhhhhhhhCCCHHHHHHHHHHHH
Confidence 2221 33 99999999999976 666 9999999999988887666665555544
No 76
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=98.53 E-value=1.6e-07 Score=94.01 Aligned_cols=113 Identities=14% Similarity=0.142 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhhh-
Q 010413 69 SIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKW- 147 (511)
Q Consensus 69 ~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~- 147 (511)
+++..|.+.+++.|.+.||.||.||+|.... +| . .-+.|.+...+ .++.++|+-..+ ++...
T Consensus 2 ~~rs~i~~~ir~~f~~~gf~ev~tP~l~~~~-----~~---~-~~~~f~~~~~~---~g~~~~L~~Spq-----l~~~~~ 64 (269)
T cd00669 2 KVRSKIIKAIRDFMDDRGFLEVETPMLQKIT-----GG---A-GARPFLVKYNA---LGLDYYLRISPQ-----LFKKRL 64 (269)
T ss_pred cHHHHHHHHHHHHHHHCCCEEEECCEEeccC-----Cc---c-ccceEEeeecC---CCCcEEeecCHH-----HHHHHH
Confidence 5788999999999999999999999998642 11 1 11456553221 147888873332 12222
Q ss_pred hhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHH
Q 010413 148 IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 204 (511)
Q Consensus 148 ~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l 204 (511)
+.+. +. |+|++++|||+| +++.+ |++||+|.|++..+.+-++....+..++
T Consensus 65 ~~~~--~~-~vf~i~~~fR~e-~~~~~--hl~EF~~le~e~~~~~~~dvm~~~e~lv 115 (269)
T cd00669 65 MVGG--LD-RVFEINRNFRNE-DLRAR--HQPEFTMMDLEMAFADYEDVIELTERLV 115 (269)
T ss_pred HhcC--CC-cEEEEecceeCC-CCCCC--cccceeEEEEEEecCCHHHHHHHHHHHH
Confidence 2222 22 999999999999 66777 9999999999988887777766665555
No 77
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=98.17 E-value=1.8e-06 Score=85.34 Aligned_cols=201 Identities=15% Similarity=0.076 Sum_probs=113.0
Q ss_pred hHHHHHHHHHHHHHHHHhcceeeeeeecccC-hhhhhh---hhhcccCCCcceeeEeccCCCCCCCceeecCCCccccch
Q 010413 67 AMSIWETMQKFFDAEIKKMKIQNCYFPLFVS-PTVLQK---EKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYP 142 (511)
Q Consensus 67 g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~-~~l~~~---~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~ 142 (511)
...-...+.+.+++.|...||+++..|.+++ ...|.+ ...|-..=..+.|++..-.. ...+..+||...++....
T Consensus 15 ~~hp~~~~~~~i~~~~~~~Gf~e~~~~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~p~~-~~~~~~vLRThts~~~~~ 93 (247)
T PF01409_consen 15 RLHPITKFIREIRDIFVGMGFQEVEGPEVESEFYNFDALNIPQDHPARDMQDTFYISNPYS-AEEDYSVLRTHTSPGQLR 93 (247)
T ss_dssp BTSHHHHHHHHHHHHHHCTTSEEESTTSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCSSSB-CECSSEEE-SSTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCCeEeeCCeEEeeHHHHHhhCcCCCccccccccceeeecccc-ccchhhhhhhhhhHHHHH
Confidence 4456788999999999999999999999965 333321 11121111123455532210 003678999887776666
Q ss_pred hhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhh-hcccccc
Q 010413 143 YYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF-LAVPVIK 221 (511)
Q Consensus 143 ~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~l-g~ip~~~ 221 (511)
.. .+++..|+|++.+|.|||.|..... .+.+|+|.|+-+++.. -.-.+ +...+..+++.+ | ..+.+
T Consensus 94 ~l----~~~~~~p~kif~iG~VyR~D~~D~t---h~~~f~Qleg~~~~~~--~~f~~---Lk~~l~~l~~~lfG-~~~~~ 160 (247)
T PF01409_consen 94 TL----NKHRPPPIKIFEIGKVYRRDEIDAT---HLPEFHQLEGLVVDKN--VTFED---LKGTLEELLKELFG-IDVKV 160 (247)
T ss_dssp HH----TTTSHSSEEEEEEEEEESSSCSBSS---BESEEEEEEEEEEETT--E-HHH---HHHHHHHHHHHHHT-TTEEE
T ss_pred HH----HHhcCCCeEEEecCceEecCCcccc---cCccceeEeeEEEecc--cchhH---HHHHHHHHHHHHhh-cccce
Confidence 55 4456789999999999999964333 6789999999875432 22233 344457778777 5 33111
Q ss_pred ccccccccccCccceeeEEEee----cCCCcccccccccccccccccceeeEEeCCCCceeeeeeecccccccee
Q 010413 222 GKKSELEKFAGGLYTTTVEAFI----PNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAYTTRTI 292 (511)
Q Consensus 222 g~~~~~ek~~ga~y~~~ie~~~----p~~gr~lq~gt~~~lg~~~s~~f~i~y~~~~g~~~~v~~~~~Gi~eRli 292 (511)
-.+ +..| .+.-|..++.+ ...++++|+|.+=.+.-..-+.+++ + ...+++..++| +||+.
T Consensus 161 r~~--ps~f--PftePs~e~~i~~~~~~~~~wiEvgg~G~vhP~Vl~~~gi-----d-~~~~~~A~G~G-leRla 224 (247)
T PF01409_consen 161 RFR--PSYF--PFTEPSREADIYCGVCKGGGWIEVGGCGMVHPEVLENWGI-----D-EEYPGFAFGLG-LERLA 224 (247)
T ss_dssp EEE--ECEE--TTEEEEEEEEEEEECTTTTCEEEEEEEEEE-HHHHHHTT--------TTSEEEEEEEE-HHHHH
T ss_pred Eee--cCCC--CcccCCeEEEEEEeeccCCCceEEeecccccHhhhhccCc-----C-ccceEEEecCC-HHHHH
Confidence 111 1112 23335555433 2234555654432222222334443 1 23355555555 79986
No 78
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=98.14 E-value=4.4e-06 Score=85.89 Aligned_cols=114 Identities=19% Similarity=0.217 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhh
Q 010413 67 AMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSK 146 (511)
Q Consensus 67 g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~ 146 (511)
-.+++..|.+.+++.|.+.||.+|.||+|+.... .++.+-|. +.-- +++++|+...+ ++.+
T Consensus 23 ~~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~~~----e~~~~~f~-----~~~~-----~~~~yL~~Spq-----l~lk 83 (322)
T cd00776 23 IFRIRSEVLRAFREFLRENGFTEVHTPKITSTDT----EGGAELFK-----VSYF-----GKPAYLAQSPQ-----LYKE 83 (322)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCceecCCC----CccCCccc-----cccC-----CCcceecCCHH-----HHHH
Confidence 4678999999999999999999999999987331 23333332 2111 36777864443 2333
Q ss_pred hhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCccccc-ChhhhHHHHHHHH
Q 010413 147 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFA-TKSEADDEVLQIL 204 (511)
Q Consensus 147 ~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~-~~e~a~~e~~~~l 204 (511)
....- + =|+|++|+|||.|.+.+. ....||+|.|++.+++ +-++....+..++
T Consensus 84 ~l~~~--~-~~vf~i~~~FR~E~~~~~--rHl~EFtmlE~e~~~~~~~~dlm~~~e~ll 137 (322)
T cd00776 84 MLIAA--L-ERVYEIGPVFRAEKSNTR--RHLSEFWMLEAEMAFIEDYNEVMDLIEELI 137 (322)
T ss_pred HHHHh--h-hhhEEeccccccCCCCcC--CCcceeeccceeeeccCCHHHHHHHHHHHH
Confidence 33221 2 379999999999964332 2578999999999888 7666666665555
No 79
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=98.09 E-value=6.6e-06 Score=82.87 Aligned_cols=114 Identities=12% Similarity=0.056 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhhhh
Q 010413 69 SIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWI 148 (511)
Q Consensus 69 ~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~ 148 (511)
+++..|.+.+|+.|.+.||.||.||+|..... .|- .+ |.+..... .+..+.|+- |. .++.+.+
T Consensus 2 ~~Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~----~g~----~~--f~~~~~~~--~~~~~~L~~-Sp----ql~lk~l 64 (280)
T cd00777 2 RLRSRVIKAIRNFLDEQGFVEIETPILTKSTP----EGA----RD--FLVPSRLH--PGKFYALPQ-SP----QLFKQLL 64 (280)
T ss_pred chHHHHHHHHHHHHHHCCCEEEeCCeeecCCC----CCC----CC--ceeccccC--CCceeeccc-CH----HHHHHHH
Confidence 57889999999999999999999999985332 111 11 21111000 023444542 21 3444433
Q ss_pred hcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHH
Q 010413 149 RGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 204 (511)
Q Consensus 149 ~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l 204 (511)
... .+ =|+|+++++||+|.+ ..+ |..||+|.|++.++.+-++....+..++
T Consensus 65 l~~-g~-~~v~~i~~~fR~e~~-~~~--r~~Ef~~~e~e~~~~~~~dlm~~~e~li 115 (280)
T cd00777 65 MVS-GF-DRYFQIARCFRDEDL-RAD--RQPEFTQIDIEMSFVDQEDIMSLIEGLL 115 (280)
T ss_pred Hhc-Cc-CcEEEeccceeCCCC-CCC--ccceeEEeEeeeccCCHHHHHHHHHHHH
Confidence 221 22 289999999999964 557 8899999999998887776666665555
No 80
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=2.6e-05 Score=79.43 Aligned_cols=203 Identities=14% Similarity=0.139 Sum_probs=115.9
Q ss_pred eceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhh-----hhhcccCCCcceeeEeccCCCCCCCcee
Q 010413 57 ISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQK-----EKDHIEGFAPEVAWVTKSGESDLEVPIA 131 (511)
Q Consensus 57 ~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~-----~sg~~~~f~~emy~~~~~g~~~l~~~l~ 131 (511)
.+|- .+.|.+......+.+.+++.|...||+++..|.++. +.|.- ...|-..=-.+-|++.+.. +.+.
T Consensus 100 lp~~-~~~~G~~Hpl~~~~e~i~~iF~~mGF~~~~gp~IE~-d~~NFDaLn~P~dHPARdmqDTFy~~~~~-----~~~l 172 (335)
T COG0016 100 LPGR-RIYPGSLHPLTQTIEEIEDIFLGMGFTEVEGPEIET-DFYNFDALNIPQDHPARDMQDTFYLKDDR-----EKLL 172 (335)
T ss_pred CCCc-cCCCCCcChHHHHHHHHHHHHHHcCceeccCCcccc-cccchhhhcCCCCCCcccccceEEEcCCC-----Ccee
Confidence 4555 566677888899999999999999999999996653 44421 1111111111346666422 2567
Q ss_pred ecCCCccccchhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHH
Q 010413 132 IRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIY 211 (511)
Q Consensus 132 LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~ 211 (511)
||--.++.-++...+.. .-|+|++..|.|||+|..... -+.+|+|.|+-++. ..-.-..+. .++..++
T Consensus 173 LRTHTs~vq~R~l~~~~----~~P~k~~~~grvyR~D~~DaT---Hs~~FhQiEGlvvd--~~~s~~~Lk---g~L~~f~ 240 (335)
T COG0016 173 LRTHTSPVQARTLAENA----KIPIKIFSPGRVYRNDTVDAT---HSPEFHQIEGLVVD--KNISFADLK---GTLEEFA 240 (335)
T ss_pred ecccCcHhhHHHHHhCC----CCCceEecccceecCCCCCcc---cchheeeeEEEEEe--CCccHHHHH---HHHHHHH
Confidence 87544444444444322 239999999999999954322 67899999997643 333334444 4447777
Q ss_pred hhhhccccccccccccccccCccceeeE--EEeecCCCcccc---cccccccccccccceeeEEeCCCCceeeeeeeccc
Q 010413 212 EEFLAVPVIKGKKSELEKFAGGLYTTTV--EAFIPNTGRGIQ---GATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWA 286 (511)
Q Consensus 212 ~~lg~ip~~~g~~~~~ek~~ga~y~~~i--e~~~p~~gr~lq---~gt~~~lg~~~s~~f~i~y~~~~g~~~~v~~~~~G 286 (511)
+.++.....+-.++ .-|+ +--|.+ |.+++.+++.++ +|.+| .+.-+..|+ ....+.+..||
T Consensus 241 ~~~fg~~~~vRfrp--syFP--FTEPS~Evdv~~~~~~~WlEi~G~Gmv~---P~VL~~~G~-------~~~~~~GfAfG 306 (335)
T COG0016 241 KKFFGEDVKVRFRP--SYFP--FTEPSAEVDVYCPGCGGWLEILGCGMVH---PNVLEAVGI-------DPEEYSGFAFG 306 (335)
T ss_pred HHhcCCCcceEeec--CCCC--CCCCeEEEEEEEcCCCCEEEEecccccC---HHHHHhcCC-------CCCcceEEEEe
Confidence 77653221121111 1111 112444 455676666777 45555 122233332 12244455666
Q ss_pred c-cccee
Q 010413 287 Y-TTRTI 292 (511)
Q Consensus 287 i-~eRli 292 (511)
+ +||+.
T Consensus 307 lGlERlA 313 (335)
T COG0016 307 LGLERLA 313 (335)
T ss_pred ecHHHHH
Confidence 6 89985
No 81
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=97.98 E-value=1.9e-05 Score=80.52 Aligned_cols=117 Identities=18% Similarity=0.135 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhhh-
Q 010413 69 SIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKW- 147 (511)
Q Consensus 69 ~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~- 147 (511)
++|..|.+.+|+.+.++||.+|.||+|++...- -++.+- |.+..-+....+.+.+|+-.++ ++.+.
T Consensus 2 ~~rs~i~~~ir~~f~~~gF~EV~TP~l~~~~~~---e~~~~~-----F~~~y~~~~~~~~~~yL~~Spq-----l~lk~l 68 (304)
T TIGR00462 2 RARARLLAAIRAFFAERGVLEVETPLLSPAPVT---DPHLDA-----FATEFLGPDGEGRPLYLQTSPE-----YAMKRL 68 (304)
T ss_pred hHHHHHHHHHHHHHHHCCCEEEECCeEecCCCC---CcCCcc-----eeeeccCCCCCCcceeeecCHH-----HHHHHH
Confidence 578999999999999999999999999975321 122222 2222111001135667754443 33342
Q ss_pred hhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHH
Q 010413 148 IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 204 (511)
Q Consensus 148 ~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l 204 (511)
+.+ .+ =|+|++|+|||+|.+.. ...-||+|.|++.++.+-++....+..++
T Consensus 69 l~~--g~-~rVfeigp~FRaE~~~~---rHl~EFtmLE~e~~~~d~~d~m~~~e~li 119 (304)
T TIGR00462 69 LAA--GS-GPIFQICKVFRNGERGR---RHNPEFTMLEWYRPGFDYHDLMDEVEALL 119 (304)
T ss_pred Hhc--cC-CCEEEEcCceeCCCCCC---CcccHHHhHHHHHHcCCHHHHHHHHHHHH
Confidence 222 23 38999999999997643 36789999999988876665554444443
No 82
>PRK06462 asparagine synthetase A; Reviewed
Probab=97.93 E-value=2.9e-05 Score=80.29 Aligned_cols=123 Identities=10% Similarity=-0.047 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhh
Q 010413 67 AMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSK 146 (511)
Q Consensus 67 g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~ 146 (511)
-.+++..|.+.+|+.|.+.||.||.||+|....-=.-..|-...| ..+.+... +.+++|++..+ ++++
T Consensus 29 il~~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~~~~g~~~~~--~~~~~~~~-----~~~~yL~~Spq-----l~k~ 96 (335)
T PRK06462 29 VLKVQSSILRYTREFLDGRGFVEVLPPIISPSTDPLMGLGSDLPV--KQISIDFY-----GVEYYLADSMI-----LHKQ 96 (335)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCeEecCCCCCCCccccCCc--cccccccC-----CCceeeccCHH-----HHHH
Confidence 568999999999999999999999999998641000001100011 11222211 36777865543 3444
Q ss_pred hhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHH
Q 010413 147 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 204 (511)
Q Consensus 147 ~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l 204 (511)
.+.+- + =|+|++|++||+|...+-+=...-||+|.|++.++.+-++..+.+..++
T Consensus 97 ll~~g--~-~rVfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~~d~~dlm~~~e~lv 151 (335)
T PRK06462 97 LALRM--L-GKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEGADLDEVMDLIEDLI 151 (335)
T ss_pred HHHhh--c-CcEEEEeccccCCCCCCCCCCCCCchheeeehhhcCCHHHHHHHHHHHH
Confidence 33321 2 3899999999999765511126789999999988877766666665555
No 83
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=97.88 E-value=2.8e-05 Score=80.40 Aligned_cols=120 Identities=18% Similarity=0.148 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhh
Q 010413 67 AMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSK 146 (511)
Q Consensus 67 g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~ 146 (511)
-.+++..|.+.+|+.|.+.||.||.||+|..... .| ..+.|.+....+.-.++++.|+...+ ++.+
T Consensus 21 ~~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~~----~~-----~~~~F~v~~~~~~~~~~~~~L~~Spq-----l~~k 86 (335)
T PF00152_consen 21 ILRIRSAILQAIREFFDKRGFIEVDTPILTSSTC----EG-----GAEPFSVDSEPGKYFGEPAYLTQSPQ-----LYLK 86 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-EEE---SEESSSS----SS-----SSCSEEEEESTTEETTEEEEE-SSSH-----HHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEcCceeecccc----Cc-----cccccccccchhhhcccceecCcChH-----HHHh
Confidence 4678999999999999999999999999987532 22 23455555111111136778876664 3333
Q ss_pred hhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHH
Q 010413 147 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 204 (511)
Q Consensus 147 ~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l 204 (511)
.+.+. .+ =|+||+|+|||.|.+.+ + .-.-||+|.|++..+++..+..+.+..++
T Consensus 87 ~ll~~-g~-~~vf~i~~~FR~E~~~~-~-rHl~EFtmLE~e~a~~~~~~lm~~~e~li 140 (335)
T PF00152_consen 87 RLLAA-GL-ERVFEIGPCFRNEESRT-R-RHLPEFTMLEWEMAFADYDDLMDLIEELI 140 (335)
T ss_dssp HHHHT-TH-SEEEEEEEEE-BSSSCB-T-TBSSEEEEEEEEEETSSHHHHHHHHHHHH
T ss_pred hhccc-cc-hhhhheecceeccCccc-c-cchhhhhhhhhccccCcHHHhHHHHHHHH
Confidence 33322 12 28999999999996512 1 14569999999999999888777766665
No 84
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=97.82 E-value=4.1e-05 Score=81.70 Aligned_cols=115 Identities=11% Similarity=0.062 Sum_probs=78.6
Q ss_pred chHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhh
Q 010413 66 WAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYS 145 (511)
Q Consensus 66 ~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~ 145 (511)
.-.+++..|.+.+|+.|.+.||.||.||+|..... .|+. ++|.++.-+ .+++|+-.. .+|.
T Consensus 131 ~~~r~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~----eg~~-----~~f~v~~~~-----~~~yL~~Sp-----ql~~ 191 (428)
T TIGR00458 131 AIFRIRSGVLESVREFLAEEGFIEVHTPKLVASAT----EGGT-----ELFPITYFE-----REAFLGQSP-----QLYK 191 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCceecCCC----CCCc-----ceeeeEecC-----CcEEECcCH-----HHHH
Confidence 34688999999999999999999999999974221 1222 344444332 567775433 3344
Q ss_pred hhh-hcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHH
Q 010413 146 KWI-RGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 204 (511)
Q Consensus 146 ~~~-~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l 204 (511)
+.+ .+ .+ =|+|++|++||+|.+.+.= -.-||+|.|++.++.+.++....+..++
T Consensus 192 q~li~~--g~-~rVf~i~~~FR~E~~~t~r--Hl~EFt~lE~e~a~~~~~dlm~~~e~li 246 (428)
T TIGR00458 192 QQLMAA--GF-ERVYEIGPIFRAEEHNTHR--HLNEATSIDIEMAFEDHHDVMDILEELV 246 (428)
T ss_pred HHHHhc--cc-CcEEEEecccccCCCCCcc--chheeeEeeeeeccCCHHHHHHHHHHHH
Confidence 432 22 23 3899999999999764321 3469999999998888766665555554
No 85
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=97.81 E-value=6.8e-05 Score=77.36 Aligned_cols=114 Identities=13% Similarity=0.135 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhhh
Q 010413 68 MSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKW 147 (511)
Q Consensus 68 ~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~ 147 (511)
.+++..|...+|+.|.+.||.||.||+|.+.. ..++. +.|.+.... .+.+.+|+-.++ +|.+.
T Consensus 8 l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~----~~~~~-----~~f~~~~~~---~~~~~yL~~Spq-----l~~k~ 70 (329)
T cd00775 8 FIVRSKIISYIRKFLDDRGFLEVETPMLQPIA----GGAAA-----RPFITHHNA---LDMDLYLRIAPE-----LYLKR 70 (329)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCccccCC----CCccc-----eeEEeccCC---CCcceeeccCHH-----HHHHH
Confidence 57889999999999999999999999997643 11222 233222111 136677753332 33333
Q ss_pred h-hcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHH
Q 010413 148 I-RGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 204 (511)
Q Consensus 148 ~-~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l 204 (511)
+ .+ .+ =++|++|+|||.|.+.. ...-||+|.|++..+.+-++....+..++
T Consensus 71 ll~~--g~-~~vf~i~~~FR~E~~~~---rHl~EFt~le~e~~~~~~~~~m~~~e~li 122 (329)
T cd00775 71 LIVG--GF-ERVYEIGRNFRNEGIDL---THNPEFTMIEFYEAYADYNDMMDLTEDLF 122 (329)
T ss_pred HHhc--CC-CcEEEEeccccCCCCCC---CCCCceEEEEEeeecCCHHHHHHHHHHHH
Confidence 3 22 22 48999999999997643 37889999999988887776666665555
No 86
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=97.79 E-value=5.4e-05 Score=83.18 Aligned_cols=122 Identities=13% Similarity=0.134 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEecc-CCCCCCCceeecCCCccccchhhh
Q 010413 67 AMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKS-GESDLEVPIAIRPTSETVMYPYYS 145 (511)
Q Consensus 67 g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~-g~~~l~~~l~LRPt~e~~~~~~~~ 145 (511)
-.+++..|.+.+|+.|.+.||.||.||+|....- +.+ .+ |.+... .. +.-|+|+ .|. .+|+
T Consensus 137 ~lr~Rs~i~~~iR~ff~~~gFiEVeTP~L~~s~~---eGa-----r~--f~vp~~~~~---~~~y~L~-qSp----Qlyk 198 (583)
T TIGR00459 137 RLKLRHKVTKAVRNFLDQQGFLEIETPMLTKSTP---EGA-----RD--YLVPSRVHK---GEFYALP-QSP----QLFK 198 (583)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeeccCCC---CCC-----cc--eeeeeecCC---CceeecC-CCH----HHHH
Confidence 4689999999999999999999999999986321 111 11 111111 00 2344564 332 3455
Q ss_pred hhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhh
Q 010413 146 KWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 214 (511)
Q Consensus 146 ~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~l 214 (511)
+.+... .+ =|+||+++|||+|...+ . |--||+|.|++..+++.++....+..++ ..+++.+
T Consensus 199 q~l~v~-G~-ervfqI~~~FR~E~~~t-~--r~pEFT~le~E~af~d~~dvm~~~E~li---~~v~~~v 259 (583)
T TIGR00459 199 QLLMVS-GV-DRYYQIARCFRDEDLRA-D--RQPEFTQIDMEMSFMTQEDVMELIEKLV---SHVFLEV 259 (583)
T ss_pred HHHHhc-cc-CcEEEEcceeeCCCCCC-C--CCcccCcceeeecCCCHHHHHHHHHHHH---HHHHHHH
Confidence 543211 22 28999999999996533 5 8899999999999998777766666555 4555544
No 87
>PLN02903 aminoacyl-tRNA ligase
Probab=97.75 E-value=8.2e-05 Score=82.27 Aligned_cols=123 Identities=13% Similarity=0.130 Sum_probs=81.8
Q ss_pred chHHHHHHHHHHHHHHHHh-cceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhh
Q 010413 66 WAMSIWETMQKFFDAEIKK-MKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYY 144 (511)
Q Consensus 66 ~g~~i~~~I~~~~~~~~~~-~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~ 144 (511)
.-.+++..|.+.+|+.|.+ .||.||.||+|....- +.+ .+.+....... +..++|+ .|. .+|
T Consensus 201 ~~lr~Rs~i~~~iR~fl~~~~gFiEVeTPiL~~st~---eGa------rdf~v~~~~~~---g~~y~L~-qSP----Qly 263 (652)
T PLN02903 201 ANLRLRHRVVKLIRRYLEDVHGFVEIETPILSRSTP---EGA------RDYLVPSRVQP---GTFYALP-QSP----QLF 263 (652)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEECCeeccCCC---CCC------cccEEeeecCC---CcccccC-CCH----HHH
Confidence 3568899999999999986 9999999999985332 111 12222211110 2455563 332 345
Q ss_pred hhhhh-cCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhh
Q 010413 145 SKWIR-GHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 214 (511)
Q Consensus 145 ~~~~~-s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~l 214 (511)
++.+. +. + =|+||+++|||+|...+ . |--||+|.|++..|.+.++....+..++ ..+++.+
T Consensus 264 kQ~Lm~~G--~-~RvFqIa~~FR~E~~~t-~--RhpEFTqLE~E~sf~d~~dvm~~~E~li---~~v~~~~ 325 (652)
T PLN02903 264 KQMLMVSG--F-DRYYQIARCFRDEDLRA-D--RQPEFTQLDMELAFTPLEDMLKLNEDLI---RQVFKEI 325 (652)
T ss_pred HHHHHhcc--C-CcEEEEehhhccCCCCC-C--cccceeeeeeeecCCCHHHHHHHHHHHH---HHHHHHH
Confidence 55432 22 2 28999999999996533 4 8899999999999998777776666665 4555443
No 88
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=97.75 E-value=0.00011 Score=78.64 Aligned_cols=115 Identities=15% Similarity=0.158 Sum_probs=78.7
Q ss_pred chHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhh
Q 010413 66 WAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYS 145 (511)
Q Consensus 66 ~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~ 145 (511)
.-.+++..|.+.+|+.|.+.||.||.||+|..... .|+. +.|.+.-- +..++|+-.. .+|.
T Consensus 134 ~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~----eg~~-----~~f~~~~~-----~~~~~L~~Sp-----ql~~ 194 (437)
T PRK05159 134 AIFKIRSEVLRAFREFLYENGFTEIFTPKIVASGT----EGGA-----ELFPIDYF-----EKEAYLAQSP-----QLYK 194 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCcccccCC----CCCc-----ceEeEEec-----CCceEecCCH-----HHHH
Confidence 34688999999999999999999999999964221 2222 23444322 3677785443 2344
Q ss_pred hhhhcCCCCccccccccceEeeeecCCCCccc-chhhhcccCcccccC-hhhhHHHHHHHH
Q 010413 146 KWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIR-SREFLWQEGHTAFAT-KSEADDEVLQIL 204 (511)
Q Consensus 146 ~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R-~REF~q~e~~~~~~~-~e~a~~e~~~~l 204 (511)
+.+..- .+ =|+||+++|||+|.+.+ . | .-||+|.|++.++.+ -++....+..++
T Consensus 195 q~l~~~-g~-~rVf~i~~~FR~E~~~t-~--rHl~EFt~lE~e~a~~~~~~~lm~~~e~lv 250 (437)
T PRK05159 195 QMMVGA-GF-ERVFEIGPVFRAEEHNT-S--RHLNEYTSIDVEMGFIDDHEDVMDLLENLL 250 (437)
T ss_pred HHHHhc-CC-CcEEEEeceeeCCCCCC-c--ccchhhheeeeeeeecccHHHHHHHHHHHH
Confidence 444321 23 28999999999996543 2 3 469999999998887 676666665555
No 89
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=97.75 E-value=6.2e-05 Score=77.04 Aligned_cols=140 Identities=15% Similarity=0.121 Sum_probs=92.8
Q ss_pred eeeeeeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhh-hh---hhhhcccCCCcceeeEeccCCCCCC
Q 010413 52 IEYYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTV-LQ---KEKDHIEGFAPEVAWVTKSGESDLE 127 (511)
Q Consensus 52 ~d~~~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l-~~---~~sg~~~~f~~emy~~~~~g~~~l~ 127 (511)
+|. ..+| ..+.+-...-...+.+.+++.|...||+++.+|.+++... |. ....|-..=..+.|++.
T Consensus 93 ~d~-t~p~-~~~~~G~~HPl~~~~~~Ir~if~~mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~~DTfyI~-------- 162 (339)
T PRK00488 93 IDV-TLPG-RRIELGSLHPITQTIEEIEDIFVGMGFEVAEGPEIETDYYNFEALNIPKDHPARDMQDTFYID-------- 162 (339)
T ss_pred ccc-cCCC-CCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCccccHHHHHHHhCCCCCCcccccCceEEEc--------
Confidence 455 3455 3445556677889999999999999999999999986442 21 11122110011345552
Q ss_pred CceeecCCCccccchhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHH
Q 010413 128 VPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELY 207 (511)
Q Consensus 128 ~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~ 207 (511)
+...||....+...+..++ ...|+|++.+|.|||++..... ++.+|+|.|+-+++... .-+++..++
T Consensus 163 ~~~lLRThTSp~qir~L~~-----~~~Pirif~~G~VyR~D~~Dat---H~~~FhQleglvvd~~v--tf~dLK~~L--- 229 (339)
T PRK00488 163 DGLLLRTHTSPVQIRTMEK-----QKPPIRIIAPGRVYRNDSDDAT---HSPMFHQVEGLVVDKNI--SFADLKGTL--- 229 (339)
T ss_pred CCceeeccCcHHHHHHHHh-----cCCCeEEEEeeeEEEcCCCCcc---cCcceeeEEEEEEeCCC--CHHHHHHHH---
Confidence 4678998877766665544 4689999999999999952222 78899999998866432 345555555
Q ss_pred HHHHhhh
Q 010413 208 RRIYEEF 214 (511)
Q Consensus 208 ~~i~~~l 214 (511)
..+++.+
T Consensus 230 ~~fl~~~ 236 (339)
T PRK00488 230 EDFLKAF 236 (339)
T ss_pred HHHHHHH
Confidence 5555554
No 90
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=97.74 E-value=3.2e-05 Score=75.94 Aligned_cols=121 Identities=15% Similarity=0.041 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhhh
Q 010413 68 MSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKW 147 (511)
Q Consensus 68 ~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~ 147 (511)
...|.+|++.+|+.|...||.||.||.|...-.- --|+..|.-+...-.+.+ ...+.|.+..|-.+-++.+..
T Consensus 16 ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~vt---d~hL~~F~Te~~~~~~~~----~~~l~L~TSPEy~mKrLLAag 88 (322)
T COG2269 16 LLKRAAIIAAIRRFFAERGVLEVETPALSVAPVT---DIHLHPFETEFLGPGGAK----GKPLWLHTSPEYHMKRLLAAG 88 (322)
T ss_pred HHHHHHHHHHHHHHHHHcCceEecchHhhcCCCC---ccceeeeeeEEeccCccc----cceeeeecCcHHHHHHHHHcc
Confidence 5678999999999999999999999999654332 346666665543222211 467888877775554443332
Q ss_pred hhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHH
Q 010413 148 IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILE 205 (511)
Q Consensus 148 ~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~ 205 (511)
--.+||+|.|||++..+++ ---||+|.|-+.+|++..-...|+..+++
T Consensus 89 -------~~~ifql~kvfRN~E~G~~---H~PEFTMLEWYrv~~d~~~lm~e~~~Ll~ 136 (322)
T COG2269 89 -------SGPIFQLGKVFRNEEMGRL---HNPEFTMLEWYRVGCDYYRLMNEVDDLLQ 136 (322)
T ss_pred -------CCcchhhhHHHhccccccc---CCCceeEeeeeccCCcHHHHHHHHHHHHH
Confidence 2358999999999854332 34599999999999998877777766663
No 91
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=3.3e-05 Score=82.31 Aligned_cols=123 Identities=15% Similarity=0.156 Sum_probs=83.9
Q ss_pred hHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhh
Q 010413 67 AMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSK 146 (511)
Q Consensus 67 g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~ 146 (511)
-..++.++...+|+.+...||.+|.||+|....= -| =.+ |.|-.+-. -++=||| |-|- .+|++
T Consensus 140 ~l~lR~kv~~~iR~~ld~~gF~EiETPiLtkSTP----EG----ARD--fLVPSRv~--~G~FYAL-PQSP----QlfKQ 202 (585)
T COG0173 140 NLKLRSKVTKAIRNFLDDQGFLEIETPILTKSTP----EG----ARD--FLVPSRVH--PGKFYAL-PQSP----QLFKQ 202 (585)
T ss_pred HHHHHHHHHHHHHHHHhhcCCeEeecCccccCCC----cc----ccc--cccccccC--CCceeec-CCCH----HHHHH
Confidence 4678999999999999999999999999965321 11 111 22211100 0244555 5543 45665
Q ss_pred hhh-cCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhhh
Q 010413 147 WIR-GHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFL 215 (511)
Q Consensus 147 ~~~-s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~lg 215 (511)
.+. |-=| |+|||.+|||+|- .+.- |.-||+|.|+++-|++.++...-+..|+ ..+|++..
T Consensus 203 LLMvsGfd---RYyQIarCFRDED-lRaD--RQPEFTQiD~EmSF~~~edv~~~~E~l~---~~vf~~~~ 263 (585)
T COG0173 203 LLMVAGFD---RYYQIARCFRDED-LRAD--RQPEFTQIDLEMSFVDEEDVMELIEKLL---RYVFKEVK 263 (585)
T ss_pred HHHHhccc---ceeeeeeeecccc-cccc--cCCcceeEeEEeecCCHHHHHHHHHHHH---HHHHHHhc
Confidence 542 2112 8999999999994 3445 8899999999999999988776666665 77777654
No 92
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=97.71 E-value=0.00011 Score=80.89 Aligned_cols=115 Identities=16% Similarity=0.090 Sum_probs=77.5
Q ss_pred hHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhh
Q 010413 67 AMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSK 146 (511)
Q Consensus 67 g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~ 146 (511)
-.+++..|.+.+|+.|.+.||.||.||+|.+.. .|- ...-| .++.. .++.+++||-..+ +|.+
T Consensus 252 ifr~RS~Ii~aiR~Ff~~rGFlEVeTPiL~~~~-----GGA----~a~PF-~T~~n--~~d~~lYLriSpE-----L~lK 314 (585)
T PTZ00417 252 TFITRTKIINYLRNFLNDRGFIEVETPTMNLVA-----GGA----NARPF-ITHHN--DLDLDLYLRIATE-----LPLK 314 (585)
T ss_pred HHHHHHHHHHHHHHHHHHCCeEEEeCCeeeccC-----Ccc----cceeE-Eeccc--CCCcceEEeecHH-----HHHH
Confidence 357899999999999999999999999997741 121 01112 12211 1346788875543 2333
Q ss_pred hh-hcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHH
Q 010413 147 WI-RGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 204 (511)
Q Consensus 147 ~~-~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l 204 (511)
.+ .+. + =|+|++|++||+|...++ ..-||+|.|++.++++-++....+..++
T Consensus 315 rLlvgG--~-~rVfeIgp~FRnE~~~~r---HnpEFTmlE~y~ay~dy~dlM~l~E~Li 367 (585)
T PTZ00417 315 MLIVGG--I-DKVYEIGKVFRNEGIDNT---HNPEFTSCEFYWAYADFYDLIKWSEDFF 367 (585)
T ss_pred HHHHhC--C-CCEEEEcccccCCCCCCC---ccceeeeeeeeeecCCHHHHHHHHHHHH
Confidence 32 221 2 289999999999975443 6779999999998887766655555444
No 93
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=97.71 E-value=0.00011 Score=79.68 Aligned_cols=116 Identities=13% Similarity=0.100 Sum_probs=77.3
Q ss_pred chHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhh
Q 010413 66 WAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYS 145 (511)
Q Consensus 66 ~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~ 145 (511)
.-.+++..|.+.+|+.|.+.||.||.||+|.+.. +|. ....|.+.... ++.+++|+-.. .+|.
T Consensus 170 ~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~-----~Ga----~a~pF~t~~~~---~~~~~yL~~Sp-----ql~l 232 (491)
T PRK00484 170 ETFRKRSKIISAIRRFLDNRGFLEVETPMLQPIA-----GGA----AARPFITHHNA---LDIDLYLRIAP-----ELYL 232 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCceeccC-----CCc----cceeeeecccc---CCCceEeccCH-----HHHH
Confidence 3467899999999999999999999999997531 221 11223221110 13566775333 2344
Q ss_pred hhh-hcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHH
Q 010413 146 KWI-RGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 204 (511)
Q Consensus 146 ~~~-~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l 204 (511)
+.+ .+- + =|+|++|++||+|...+ -+.-||+|.|++..+++-++....+..++
T Consensus 233 k~l~v~g--~-~rVfei~~~FR~E~~~~---rH~pEFt~lE~e~a~~d~~d~m~~~E~li 286 (491)
T PRK00484 233 KRLIVGG--F-ERVYEIGRNFRNEGIDT---RHNPEFTMLEFYQAYADYNDMMDLTEELI 286 (491)
T ss_pred HHHHhcc--C-CcEEEEecceecCCCCC---CcCCceEEEEEEEecCCHHHHHHHHHHHH
Confidence 433 221 2 38999999999997644 37889999999998887766655555444
No 94
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=97.70 E-value=0.00013 Score=79.12 Aligned_cols=115 Identities=16% Similarity=0.130 Sum_probs=77.3
Q ss_pred hHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhh
Q 010413 67 AMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSK 146 (511)
Q Consensus 67 g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~ 146 (511)
-.+++..|.+.+|+.|.+.||.||.||+|.+.. +|- .-..|.+... .++.+++||-..+ +|.+
T Consensus 171 ~~r~Rs~i~~~iR~fl~~~gF~EVeTP~L~~~~-----gga----~a~pF~t~~~---~~~~~~yLriSpE-----LylK 233 (496)
T TIGR00499 171 TFLVRSKIIKAIRRFLDDRGFIEVETPMLQVIP-----GGA----NARPFITHHN---ALDMDLYLRIAPE-----LYLK 233 (496)
T ss_pred HHHHHHHHHHHHHHHHHHCcCEEEeCCeeecCC-----CCc----cceeEEeecc---cCCCceEEecCHH-----HHHH
Confidence 456888999999999999999999999997531 221 1122322211 1246777875543 3433
Q ss_pred hh-hcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHH
Q 010413 147 WI-RGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 204 (511)
Q Consensus 147 ~~-~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l 204 (511)
.+ .+- + =|+|++|++||+|...++ ..-||+|.|++.++++-++....+..++
T Consensus 234 rlivgG--~-~rVfeIg~~FRnE~~~~r---H~pEFTmlE~y~a~~d~~dlm~~~E~li 286 (496)
T TIGR00499 234 RLIVGG--F-EKVYEIGRNFRNEGVDTT---HNPEFTMIEFYQAYADYEDLMDLTENLF 286 (496)
T ss_pred HHHhCC--C-CceEEEecceecCCCCCc---ccchhheeehhhhcCCHHHHHHHHHHHH
Confidence 32 222 2 289999999999976543 6789999999998887666555554444
No 95
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=97.70 E-value=0.00014 Score=80.57 Aligned_cols=116 Identities=12% Similarity=0.061 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhh
Q 010413 67 AMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSK 146 (511)
Q Consensus 67 g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~ 146 (511)
-++++..|.+.+|+.|.+.||.||.||+|.+.. ..++ ...|.+.+.. ++.+++|+-..+ +|.+
T Consensus 232 ifr~Rs~I~~aiR~ff~~~gFlEVeTPiL~~~~----~ga~-----a~pF~t~~n~---~~~~~yL~~SPE-----LylK 294 (659)
T PTZ00385 232 TIKKRHVMLQALRDYFNERNFVEVETPVLHTVA----SGAN-----AKSFVTHHNA---NAMDLFLRVAPE-----LHLK 294 (659)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCEeeccC----CCCC-----ccceEeeccc---CCCCEEecCChH-----HHHH
Confidence 467899999999999999999999999996421 1111 1223222111 135677764443 3444
Q ss_pred hhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHH
Q 010413 147 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 204 (511)
Q Consensus 147 ~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l 204 (511)
.+... .+ =|+|++|++||+|...++ ..-||+|.|++.++.+.++....+..++
T Consensus 295 rLivg-G~-erVyeIg~~FRnE~~~~r---H~pEFTmlE~y~a~~d~~d~m~l~E~li 347 (659)
T PTZ00385 295 QCIVG-GM-ERIYEIGKVFRNEDADRS---HNPEFTSCEFYAAYHTYEDLMPMTEDIF 347 (659)
T ss_pred HHhhc-cc-CCEEEEeceecCCCCCCC---ccccccceeeeeecCCHHHHHHHHHHHH
Confidence 33211 12 389999999999976433 7889999999998988777666665554
No 96
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=97.68 E-value=8.9e-05 Score=81.92 Aligned_cols=122 Identities=12% Similarity=0.118 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEecc-CCCCCCCceeecCCCccccchhhh
Q 010413 67 AMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKS-GESDLEVPIAIRPTSETVMYPYYS 145 (511)
Q Consensus 67 g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~-g~~~l~~~l~LRPt~e~~~~~~~~ 145 (511)
-.+++..|...+|+.|.+.||.||.||+|.+..- .|- .+ |.+... .. +..++|+ .|- .+|+
T Consensus 140 ~l~~Rs~i~~~iR~ff~~~gFiEV~TP~L~~s~~----ega----~~--f~v~~~~~~---~~~~~L~-qSp----ql~k 201 (588)
T PRK00476 140 NLKLRSKVTSAIRNFLDDNGFLEIETPILTKSTP----EGA----RD--YLVPSRVHP---GKFYALP-QSP----QLFK 201 (588)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeeecCCC----CCC----cc--ceecccccC---CceeecC-CCH----HHHH
Confidence 4678899999999999999999999999986431 111 11 222110 00 2445553 332 3455
Q ss_pred hhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhh
Q 010413 146 KWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEF 214 (511)
Q Consensus 146 ~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~l 214 (511)
+.+... .+ =|+||+++|||.|.+ ... |--||+|.|++..|.+.++....+..++ ..+++.+
T Consensus 202 q~l~~~-g~-~rvfqi~~~FR~E~~-~~~--r~~EFt~le~e~af~~~~dvm~~~E~li---~~i~~~~ 262 (588)
T PRK00476 202 QLLMVA-GF-DRYYQIARCFRDEDL-RAD--RQPEFTQIDIEMSFVTQEDVMALMEGLI---RHVFKEV 262 (588)
T ss_pred HHHHhc-cc-CceEEEeceeecCCC-CCC--cCcccccceeeecCCCHHHHHHHHHHHH---HHHHHHH
Confidence 533211 22 289999999999964 334 7779999999999998877776666665 4555443
No 97
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=97.67 E-value=0.00014 Score=78.18 Aligned_cols=119 Identities=16% Similarity=0.144 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccC----CCCCCCceeecCCCccccch
Q 010413 67 AMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSG----ESDLEVPIAIRPTSETVMYP 142 (511)
Q Consensus 67 g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g----~~~l~~~l~LRPt~e~~~~~ 142 (511)
-.+++..|.+.+|+.|.+.||.||.||+|....- .|. .++|.+.... ..-.+.+++|+-.. .
T Consensus 135 ~lr~Rs~i~~~~r~~~~~~gf~eV~TP~l~~~~~----eg~-----~~~F~v~~~~~~~~~~~~~~~~yL~~Sp-----q 200 (453)
T TIGR00457 135 VMRVRNALSQAIHRYFQENGFTWVSPPILTSNDC----EGA-----GELFRVSTDGIDFSQDFFGKEAYLTVSG-----Q 200 (453)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEecCCeEeecCC----CCC-----CCceEecccccccchhccCCccccccCH-----H
Confidence 3689999999999999999999999999986331 111 2334333100 00013556664332 3
Q ss_pred hhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHH
Q 010413 143 YYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 204 (511)
Q Consensus 143 ~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l 204 (511)
+|.+.+.+ .+ =|+|++++|||.|.+.+.= -.-||+|.|++..+++.++....+..++
T Consensus 201 l~lq~l~~--g~-~rVf~i~~~FR~E~~~t~r--Hl~EFt~le~e~~~~~~~dvm~~~E~lv 257 (453)
T TIGR00457 201 LYLETYAL--AL-SKVYTFGPTFRAEKSNTSR--HLSEFWMIEPEMAFANLNDLLQLAETLI 257 (453)
T ss_pred HHHHHHhh--cc-cCceEeeeccccCCCCCCc--CcchhccceeeeecCCHHHHHHHHHHHH
Confidence 34443322 23 2899999999999664321 2359999999998887666665555554
No 98
>PLN02502 lysyl-tRNA synthetase
Probab=97.65 E-value=0.00017 Score=79.02 Aligned_cols=114 Identities=13% Similarity=0.088 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhhh
Q 010413 68 MSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKW 147 (511)
Q Consensus 68 ~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~ 147 (511)
.+++..|.+.+|+.|.+.||.||.||+|.+.. ...... -|. ++.+ .++.+++|+-..+ +|.+.
T Consensus 229 ~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~----gGA~a~-----pF~-t~~n--~~~~~~yL~~Spe-----l~lK~ 291 (553)
T PLN02502 229 FRTRAKIISYIRRFLDDRGFLEVETPMLNMIA----GGAAAR-----PFV-THHN--DLNMDLYLRIATE-----LHLKR 291 (553)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCeeeccC----CCcccc-----cee-eecc--cCCcceeeecCHH-----HHHHH
Confidence 57889999999999999999999999997532 111111 122 2111 1246778865443 33332
Q ss_pred -hhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHH
Q 010413 148 -IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 204 (511)
Q Consensus 148 -~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l 204 (511)
+.+- + =|+|++|++||+|...+ ...-||+|.|++.++++-++....+..++
T Consensus 292 L~v~g--~-~rVfeIg~~FRnE~~~~---rH~pEFtmlE~y~a~~d~~dlm~~~E~li 343 (553)
T PLN02502 292 LVVGG--F-ERVYEIGRQFRNEGIST---RHNPEFTTCEFYQAYADYNDMMELTEEMV 343 (553)
T ss_pred HHHhc--c-CCEEEEcCeeeCCCCCC---ccccceeehhhhhhcCCHHHHHHHHHHHH
Confidence 3221 2 38999999999997654 47889999999998887766665555554
No 99
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=0.0002 Score=75.21 Aligned_cols=114 Identities=14% Similarity=0.098 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhh
Q 010413 67 AMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSK 146 (511)
Q Consensus 67 g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~ 146 (511)
-++++..|...+++.|.+.||.+|.||+|...+. +. ..++|.++--+ .+.+|-- -..+|+.
T Consensus 133 v~kirs~i~~a~~eff~~~gF~eV~tP~i~~~~~---EG------g~elF~v~yf~-----~~a~Ltq-----S~QLyke 193 (435)
T COG0017 133 VFKIRSSILRAIREFFYENGFTEVHTPIITASAT---EG------GGELFKVDYFD-----KEAYLTQ-----SPQLYKE 193 (435)
T ss_pred HHhHHHHHHHHHHHHHHhCCcEEecCceEeccCC---CC------CceeEEEeecC-----cceEEec-----CHHHHHH
Confidence 4689999999999999999999999999987653 22 24677765433 3444411 1234444
Q ss_pred hhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHH
Q 010413 147 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 204 (511)
Q Consensus 147 ~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l 204 (511)
.....- =|+|.+|++||.|.+.|+= -+-||+|.|++..|++..+..+-+..++
T Consensus 194 ~~~~al---~rVf~igP~FRAE~s~T~R--HL~EF~~ld~Emaf~~~~d~m~l~E~~i 246 (435)
T COG0017 194 ALAAAL---ERVFTIGPTFRAEKSNTRR--HLSEFWMLDPEMAFADLNDVMDLAEELI 246 (435)
T ss_pred HHHHHh---CceEEecCceecCCCCCcc--hhhhHheecceeccCcHHHHHHHHHHHH
Confidence 432211 2899999999999887763 3899999999999999766654444444
No 100
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=97.63 E-value=0.00017 Score=80.57 Aligned_cols=122 Identities=12% Similarity=0.049 Sum_probs=80.7
Q ss_pred chHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhh
Q 010413 66 WAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYS 145 (511)
Q Consensus 66 ~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~ 145 (511)
.-.+++..|.+.+|+.|.+.||.||.||+|....- +.+ .+-+....-.. +.-|+|+ .| -.+|+
T Consensus 154 ~~lr~Rs~i~~~iR~fl~~~gFiEVeTPiL~~s~~---eGA-----r~~~~p~~~~~----~~~y~L~-qS----PQlyk 216 (706)
T PRK12820 154 DHLAKRHRIIKCARDFLDSRGFLEIETPILTKSTP---EGA-----RDYLVPSRIHP----KEFYALP-QS----PQLFK 216 (706)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCccccCCC---CCC-----cceEEeeecCC----CcceecC-CC----HHHHH
Confidence 45788999999999999999999999999986321 111 11111111011 2334453 33 24455
Q ss_pred hhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHh
Q 010413 146 KWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYE 212 (511)
Q Consensus 146 ~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~ 212 (511)
+.+... .+ =|+||+++|||.|...+ - |--||+|.|++..|.+.++....+..++ ..+++
T Consensus 217 q~lm~~-G~-~rvfqI~~~FR~E~~~t-~--r~pEFT~LE~E~af~d~~dvm~l~E~li---~~v~~ 275 (706)
T PRK12820 217 QLLMIA-GF-ERYFQLARCFRDEDLRP-N--RQPEFTQLDIEASFIDEEFIFELIEELT---ARMFA 275 (706)
T ss_pred HHHHhc-cC-CcEEEEechhcCCCCCC-C--cCccccccceeeccCCHHHHHHHHHHHH---HHHHH
Confidence 553211 12 28999999999996544 3 7899999999999998887776666665 44554
No 101
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=97.61 E-value=0.00013 Score=78.46 Aligned_cols=119 Identities=18% Similarity=0.130 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccC----CCCCCCceeecCCCccccch
Q 010413 67 AMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSG----ESDLEVPIAIRPTSETVMYP 142 (511)
Q Consensus 67 g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g----~~~l~~~l~LRPt~e~~~~~ 142 (511)
-.+++..|.+.+|+.|.+.||.||.||+|.... ..|+ -+.|.+.... ..-.+.+++|+...+
T Consensus 132 ~l~~Rs~i~~~iR~f~~~~gf~EV~TP~L~~~~----~eg~-----~~~F~v~~~~~~~~~~~~~~~~~L~~Spq----- 197 (450)
T PRK03932 132 VMRIRNTLAQAIHEFFNENGFVWVDTPIITASD----CEGA-----GELFRVTTLDLDFSKDFFGKEAYLTVSGQ----- 197 (450)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEecCCceeccC----CCCC-----CCceEeecccccccccccCCCcccccCHH-----
Confidence 468899999999999999999999999998642 1122 2345442100 000135677754443
Q ss_pred hhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHH
Q 010413 143 YYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 204 (511)
Q Consensus 143 ~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l 204 (511)
+|.+.+.+ .+ =|+||+++|||.|.+.+. --.-||+|.|++..+.+.++....+..++
T Consensus 198 l~lq~l~~--g~-~rVf~i~~~FR~E~~~t~--rHl~EFt~lE~e~~~~~~~~~m~~~e~li 254 (450)
T PRK03932 198 LYAEAYAM--AL-GKVYTFGPTFRAENSNTR--RHLAEFWMIEPEMAFADLEDNMDLAEEML 254 (450)
T ss_pred HHHHHHHh--cc-CCeEEeeeccccCCCCCc--cccccccccceEEeccCHHHHHHHHHHHH
Confidence 23333222 23 289999999999964221 12459999999998888766655555444
No 102
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=97.56 E-value=0.00015 Score=78.72 Aligned_cols=114 Identities=13% Similarity=0.098 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhh-cccCCCcceeeEeccCCCCCCCceeecCCCccccchhhh
Q 010413 67 AMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKD-HIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYS 145 (511)
Q Consensus 67 g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg-~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~ 145 (511)
-.+++..|.+.+|+.|.+.||.||.||+|.+. ..| +..- | +++.. .++.+++||-..+ +|.
T Consensus 183 ~~r~Rs~i~~~iR~f~~~~gFiEVeTPiL~~~-----~gGa~a~p-----F-~t~~~--~~~~~~yL~~SpE-----Lyl 244 (505)
T PRK12445 183 TFVVRSKILAAIRQFMVARGFMEVETPMMQVI-----PGGASARP-----F-ITHHN--ALDLDMYLRIAPE-----LYL 244 (505)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCeeEec-----CCCCcccc-----e-ecccc--cCCcceeeecCHH-----HHH
Confidence 46789999999999999999999999999652 122 1111 2 12111 1245677754432 343
Q ss_pred hh-hhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHH
Q 010413 146 KW-IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 204 (511)
Q Consensus 146 ~~-~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l 204 (511)
+. +.+. + =|+|++|++||+|.... ...-||+|.|++.++++-++....+..++
T Consensus 245 KrlivgG--~-~rVfeIg~~FRnE~~~~---rH~pEFTmlE~y~a~~d~~d~m~l~E~li 298 (505)
T PRK12445 245 KRLVVGG--F-ERVFEINRNFRNEGISV---RHNPEFTMMELYMAYADYHDLIELTESLF 298 (505)
T ss_pred HHHHhcc--C-CcEEEEehhccCCCCCC---CcCcccceeeeeeecCCHHHHHHHHHHHH
Confidence 33 3222 2 28999999999996522 37889999999998887766665555554
No 103
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=97.55 E-value=0.00025 Score=75.77 Aligned_cols=172 Identities=11% Similarity=0.050 Sum_probs=97.6
Q ss_pred hHHHHHHHHHHHHHHHHhcceeeee-eecccChhhhh-----hhhhcccCCCcceeeEeccCC-----------------
Q 010413 67 AMSIWETMQKFFDAEIKKMKIQNCY-FPLFVSPTVLQ-----KEKDHIEGFAPEVAWVTKSGE----------------- 123 (511)
Q Consensus 67 g~~i~~~I~~~~~~~~~~~G~~ev~-tP~l~~~~l~~-----~~sg~~~~f~~emy~~~~~g~----------------- 123 (511)
...-...+.+.+++.|...||+++. -|.+++ +.|. --..|-..=..+-|++.+...
T Consensus 219 ~~HPl~~~~~ei~~if~~mGF~e~~~g~~ves-~f~NFDaL~~PqdHPARd~qDTFyl~~~~~~~~~p~~~~erVk~~He 297 (492)
T PLN02853 219 HLHPLLKVRQQFRKIFLQMGFEEMPTNNFVES-SFWNFDALFQPQQHPARDSHDTFFLKAPATTRQLPEDYVERVKTVHE 297 (492)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEecCCCCeec-hhhhhhhhcCCCCCCCCCccceEEEcCccccccCcHHHHHHHHHHHh
Confidence 3456778899999999999999994 566653 4441 011121111123466652100
Q ss_pred --------------CCCCCceeecCCCccccchhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCccc
Q 010413 124 --------------SDLEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTA 189 (511)
Q Consensus 124 --------------~~l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~ 189 (511)
.+..+.+.||.-.++.-+++....... ..-|+|++.+|.|||+|.-... .+.||+|.|+-++
T Consensus 298 ~G~~gS~Gw~y~W~~~~a~~~vLRTHTTa~s~r~L~~~~~~-~~~p~k~fsigrVfR~d~iDat---H~~eFhQ~EG~vv 373 (492)
T PLN02853 298 SGGYGSIGYGYDWKREEANKNLLRTHTTAVSSRMLYKLAQK-GFKPKRYFSIDRVFRNEAVDRT---HLAEFHQVEGLVC 373 (492)
T ss_pred cCCCCccccccccccchhcccccCCCCCHHHHHHHHHhhcc-CCCCcEEEeccceecCCCCCcc---cCccceeEEEEEE
Confidence 001146788865555545555543221 2369999999999999963222 6789999999986
Q ss_pred ccChhhhHHHHHHHHHHHHHHHhhhhccccccccccccccccCccceeeEEEe--ecCCCccccccc
Q 010413 190 FATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELEKFAGGLYTTTVEAF--IPNTGRGIQGAT 254 (511)
Q Consensus 190 ~~~~e~a~~e~~~~l~~~~~i~~~lg~ip~~~g~~~~~ek~~ga~y~~~ie~~--~p~~gr~lq~gt 254 (511)
... -.-.. ++.++..+|+.+|... +-.++ .-| .+--|.+|.. .+.+|+.++++-
T Consensus 374 d~~--~t~~~---L~g~l~~f~~~lg~~~--~RfrP--~yf--PfTEPS~Ei~v~~~~~gkWiEi~g 429 (492)
T PLN02853 374 DRG--LTLGD---LIGVLEDFFSRLGMTK--LRFKP--AYN--PYTEPSMEIFSYHEGLKKWVEVGN 429 (492)
T ss_pred eCC--CCHHH---HHHHHHHHHHHcCCce--EEEec--CCC--CCCCCeEEEEEEecCCCCEEEEec
Confidence 432 22233 4455578888876321 11221 111 1222555544 466677777544
No 104
>PLN02603 asparaginyl-tRNA synthetase
Probab=97.54 E-value=0.00024 Score=77.86 Aligned_cols=122 Identities=16% Similarity=0.052 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCC------CC--------------C
Q 010413 68 MSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGES------DL--------------E 127 (511)
Q Consensus 68 ~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~------~l--------------~ 127 (511)
.+++..|...+++.|.+.||.+|.||+|...+- .| +.++|.++..... .+ .
T Consensus 226 ~RiRS~i~~air~ff~~~gF~eV~TPiLt~s~~----EG-----A~e~F~Vttl~~~~~~~~~~~~~~lp~~~~~~~~~~ 296 (565)
T PLN02603 226 ARVRNALAYATHKFFQENGFVWVSSPIITASDC----EG-----AGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWS 296 (565)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCeecccCC----Cc-----cccCceeeeccccccccccccccccccCcccccccc
Confidence 488999999999999999999999999986432 11 2456666431100 00 0
Q ss_pred CceeecCCCccccchhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHH
Q 010413 128 VPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQI 203 (511)
Q Consensus 128 ~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~ 203 (511)
.++.=+|..=+.-..++...... .| =|+|++|++||.|.+.+.= -+-||+|.|++..|++-++...-+..+
T Consensus 297 ~dyF~~~~~LtvS~QL~~E~~~~--~l-~rVy~igp~FRaE~s~T~R--HL~EF~mlE~E~af~dl~d~m~~~E~~ 367 (565)
T PLN02603 297 QDFFGKPAFLTVSGQLNGETYAT--AL-SDVYTFGPTFRAENSNTSR--HLAEFWMIEPELAFADLNDDMACATAY 367 (565)
T ss_pred hhhhCcceeeccCchHHHHHHHh--cc-cceEEEecceeCCCCCCcc--ccccceeeeeeeecCCHHHHHHHHHHH
Confidence 01111111000001122222111 22 2789999999999764431 347999999999887765544443333
No 105
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=97.50 E-value=0.00018 Score=73.13 Aligned_cols=140 Identities=11% Similarity=0.077 Sum_probs=89.6
Q ss_pred eeeeeeceeEEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccCh-hhhhhhhhccc--CCC-c--ceeeEeccCCCC
Q 010413 52 IEYYDISGCYIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSP-TVLQKEKDHIE--GFA-P--EVAWVTKSGESD 125 (511)
Q Consensus 52 ~d~~~~~G~~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~-~l~~~~sg~~~--~f~-~--emy~~~~~g~~~ 125 (511)
+|.. .++. ...+....-...+.+.+++.+...||+|+.+|.|++. ..|.. -+ .+ +-. + +.+.+.
T Consensus 57 ~d~t-lp~~-~~~~g~~~p~~~~~~~ir~~l~~~Gf~Ev~~~~~~s~~~~fd~-l~-~~~~hpar~~~d~~~l~------ 126 (294)
T TIGR00468 57 YDVT-LPGT-KIYPGSLHPLTRVIDEIRDIFLGLGFTEEKGPEVETDFWNFDA-LN-IPQDHPARDMQDTFYIK------ 126 (294)
T ss_pred Cccc-CCCC-CCCCCCcCHHHHHHHHHHHHHHHCCCEEeeCCceeccHHHHHH-hC-CCCCCcchhhccceeec------
Confidence 4553 3442 2233355667888899999999999999999999886 23321 11 01 000 0 233443
Q ss_pred CCCceeecCCCccccchhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHH
Q 010413 126 LEVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILE 205 (511)
Q Consensus 126 l~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~ 205 (511)
+..+||++..+++.+..+.+.. .|+|++++|+|||.+.... . +..||+|.++-+++. .-.-.+ +..
T Consensus 127 --d~~vLRtsl~p~ll~~l~~N~~----~pirlFEiGrVfr~d~~d~-~--~~pef~ql~gl~~~~--~~~f~d---LKg 192 (294)
T TIGR00468 127 --DRLLLRTHTTAVQLRTMEENEK----PPIRIFSPGRVFRNDTVDA-T--HLPEFHQVEGLVIDK--NVSFTN---LKG 192 (294)
T ss_pred --CCcceecccHHHHHHHHHhcCC----CCceEEEecceEEcCCCCC-c--cCChhhEEEEEEECC--CCCHHH---HHH
Confidence 3568999999888777666532 7999999999999984221 1 345999998886441 111233 334
Q ss_pred HHHHHHhhhh
Q 010413 206 LYRRIYEEFL 215 (511)
Q Consensus 206 ~~~~i~~~lg 215 (511)
+.+.+++.++
T Consensus 193 ~le~ll~~l~ 202 (294)
T TIGR00468 193 FLEEFLKKMF 202 (294)
T ss_pred HHHHHHHHhC
Confidence 4577778776
No 106
>PLN02850 aspartate-tRNA ligase
Probab=97.45 E-value=0.00025 Score=77.44 Aligned_cols=114 Identities=15% Similarity=0.079 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhhh
Q 010413 68 MSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKW 147 (511)
Q Consensus 68 ~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~ 147 (511)
++++..|.+.+|+.|.+.||.||.||+|..... ++| -+.|.+..- +..++|+... .+|++.
T Consensus 225 frirs~i~~~~R~fl~~~gF~EV~TP~L~~~~~---egg------a~~F~v~yf-----~~~~~L~qSp-----ql~kq~ 285 (530)
T PLN02850 225 FRIQSQVCNLFREFLLSKGFVEIHTPKLIAGAS---EGG------SAVFRLDYK-----GQPACLAQSP-----QLHKQM 285 (530)
T ss_pred HHHHHHHHHHHHHHHHHCCcEEEeCCccccCCC---ccc------cceeeeccC-----CcceecCCCH-----HHHHHH
Confidence 578889999999999999999999999955321 121 134555432 3677885433 344444
Q ss_pred hhcCCCCccccccccceEeeeecCCCCcccchhhhcccCccccc-ChhhhHHHHHHHH
Q 010413 148 IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFA-TKSEADDEVLQIL 204 (511)
Q Consensus 148 ~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~-~~e~a~~e~~~~l 204 (511)
.... ++. |+|++|+|||.|.+.+.= -.-||+|.|++..+. +-++....+..++
T Consensus 286 li~~-g~~-rVfeIgp~FRaE~s~t~R--Hl~EFt~Le~Em~~~~~y~evm~~~E~ll 339 (530)
T PLN02850 286 AICG-DFR-RVFEIGPVFRAEDSFTHR--HLCEFTGLDLEMEIKEHYSEVLDVVDELF 339 (530)
T ss_pred HHHh-cCC-ceEEEecccccCCCCCCc--cchhhccchhhhhhhcCHHHHHHHHHHHH
Confidence 3211 332 899999999999643321 346999999995443 3344444443333
No 107
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=97.42 E-value=0.00038 Score=82.12 Aligned_cols=114 Identities=13% Similarity=0.113 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhhh
Q 010413 68 MSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKW 147 (511)
Q Consensus 68 ~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~ 147 (511)
.+++..|.+.+|+.|.+.||.||.||+|.+.. +|- .-+.|.+... -++.+++||-..+ +|.+.
T Consensus 770 ~r~Rs~i~~~iR~fl~~~gFlEVeTPiL~~~~-----gGa----~a~pF~t~~~---~~~~~~yLriSPE-----LylKr 832 (1094)
T PRK02983 770 LRARSAVVRAVRETLVARGFLEVETPILQQVH-----GGA----NARPFVTHIN---AYDMDLYLRIAPE-----LYLKR 832 (1094)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEeCCEeeccC-----CCc----ccceeEeeec---CCCccchhhcChH-----HHHHH
Confidence 56889999999999999999999999997421 121 1122322111 1245677765443 34333
Q ss_pred -hhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHH
Q 010413 148 -IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 204 (511)
Q Consensus 148 -~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l 204 (511)
+.+ .+ =|+|++|++||+|...++ ..-||+|.|++.++.+-++....+.+++
T Consensus 833 Livg--G~-erVFEIg~~FRnE~~~~r---HnpEFTmLE~y~a~~dy~d~m~l~E~li 884 (1094)
T PRK02983 833 LCVG--GV-ERVFELGRNFRNEGVDAT---HNPEFTLLEAYQAHADYDTMRDLTRELI 884 (1094)
T ss_pred HHhc--cc-CceEEEcceecCCCCCCC---ccccccchhhhhhcCCHHHHHHHHHHHH
Confidence 322 12 289999999999976543 7789999999998887766665555554
No 108
>KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis]
Probab=97.39 E-value=9.1e-05 Score=77.49 Aligned_cols=116 Identities=14% Similarity=0.105 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHHHHHH-HhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhh
Q 010413 67 AMSIWETMQKFFDAEI-KKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYS 145 (511)
Q Consensus 67 g~~i~~~I~~~~~~~~-~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~ 145 (511)
-.+++.++...+|+.+ ...||.+|.||+|.. +.-|- +.|. .+-.... -+.=|+| |-|- .-|+
T Consensus 177 nLrlRS~~v~~iR~yl~n~~GFvevETPtLFk-----rTPgG----A~EF-vVPtr~~--~g~FYaL-pQSP----QQfK 239 (628)
T KOG2411|consen 177 NLRLRSNVVKKIRRYLNNRHGFVEVETPTLFK-----RTPGG----AREF-VVPTRTP--RGKFYAL-PQSP----QQFK 239 (628)
T ss_pred HHHHHHHHHHHHHHHHhhhcCeeeccCcchhc-----cCCCc----ccee-ecccCCC--CCceeec-CCCH----HHHH
Confidence 3578888888899888 567999999999843 32221 1111 1111100 0111222 2221 2234
Q ss_pred hhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHH
Q 010413 146 KWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL 204 (511)
Q Consensus 146 ~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l 204 (511)
+.+..-. ==|+||++.|||+|.. ..- |.-||+|.|++..|.+.++..+-+..++
T Consensus 240 QlLMvsG--idrYyQiARCfRDEdl-R~D--RQPEFTQvD~EMsF~~~~dim~liEdll 293 (628)
T KOG2411|consen 240 QLLMVSG--IDRYYQIARCFRDEDL-RAD--RQPEFTQVDMEMSFTDQEDIMKLIEDLL 293 (628)
T ss_pred HHHHHhc--hhhHHhHHhhhccccc-Ccc--cCCcceeeeeEEeccCHHHHHHHHHHHH
Confidence 3332110 1289999999999943 224 8899999999999998876655444443
No 109
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=97.36 E-value=0.00018 Score=75.69 Aligned_cols=80 Identities=16% Similarity=0.114 Sum_probs=53.0
Q ss_pred ceeecCCCccccchhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHH
Q 010413 129 PIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYR 208 (511)
Q Consensus 129 ~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~ 208 (511)
.+.||+..++......+. +..+..+|+|++.+|.|||+|...-. .++++|+|.++-+++.+ -.-.++..++ .
T Consensus 182 ~~lLRTHTTpgqirtL~~-L~~~~~~PiRIFsIGRVfRrD~~~Da--THl~eFhQlEGLVVded--VSf~DLKgvL---e 253 (533)
T TIGR00470 182 TLTLRSHMTSGWFITLSS-IIDKRKLPLKLFSIDRCFRREQREDR--SHLMTYHSASCVVVDEE--VSVDDGKAVA---E 253 (533)
T ss_pred CcccccCChhHHHHHHHH-HhhcCCCCeEEEeeeeEEecCCCCCC--ccCceeeeEEEEEECCC--CCHHHHHHHH---H
Confidence 456776666544444433 12245799999999999999942111 27899999999875543 3445555554 7
Q ss_pred HHHhhhhc
Q 010413 209 RIYEEFLA 216 (511)
Q Consensus 209 ~i~~~lg~ 216 (511)
.+++.||.
T Consensus 254 ~LLr~LG~ 261 (533)
T TIGR00470 254 GLLAQFGF 261 (533)
T ss_pred HHHHHhCC
Confidence 88888874
No 110
>PLN02221 asparaginyl-tRNA synthetase
Probab=97.34 E-value=0.00065 Score=74.58 Aligned_cols=33 Identities=6% Similarity=0.041 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHHHHhcceeeeeeecccChh
Q 010413 67 AMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPT 99 (511)
Q Consensus 67 g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~ 99 (511)
-++++..|...+++.|.+.||.+|.||+|...+
T Consensus 170 i~RiRS~i~~aiR~ff~~~gFiEI~TP~Lt~s~ 202 (572)
T PLN02221 170 VARIRNALAFATHSFFQEHSFLYIHTPIITTSD 202 (572)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCeecccc
Confidence 468999999999999999999999999998754
No 111
>PLN02532 asparagine-tRNA synthetase
Probab=97.30 E-value=0.00068 Score=74.81 Aligned_cols=33 Identities=3% Similarity=0.079 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHHHHhcceeeeeeecccChh
Q 010413 67 AMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPT 99 (511)
Q Consensus 67 g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~ 99 (511)
-++++..|...+++.|.+.||.+|.||+|...+
T Consensus 234 ilRiRS~i~~aiR~ff~~~GFiEV~TPiLT~s~ 266 (633)
T PLN02532 234 VTRVRSALTHATHTFFQDHGFLYVQVPIITTTD 266 (633)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCeecccC
Confidence 468999999999999999999999999997654
No 112
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=97.30 E-value=0.00071 Score=74.12 Aligned_cols=115 Identities=11% Similarity=0.058 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhh
Q 010413 67 AMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSK 146 (511)
Q Consensus 67 g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~ 146 (511)
-++++..|...+|+.|.+.||.||.||.|..... .|+.+. |.+.-- +..++|+-.. .+|++
T Consensus 212 i~r~rs~i~~~~R~fl~~~gFiEV~TP~L~~~~~----egga~~-----F~v~yf-----~~~~~L~qSp-----ql~kq 272 (550)
T PTZ00401 212 IFRLQSRVCQYFRQFLIDSDFCEIHSPKIINAPS----EGGANV-----FKLEYF-----NRFAYLAQSP-----QLYKQ 272 (550)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCccccCCC----Cccccc-----cccccC-----CCCeecCCCH-----HHHHH
Confidence 3678889999999999999999999999986441 222222 333222 2567774332 34555
Q ss_pred hhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCccccc-ChhhhHHHHHHHH
Q 010413 147 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFA-TKSEADDEVLQIL 204 (511)
Q Consensus 147 ~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~-~~e~a~~e~~~~l 204 (511)
..... ++ =|+|++|+|||.|.+.+.= -.-||+|.|++..+. +-.+....+..++
T Consensus 273 ~li~~-g~-~rVfeI~p~FRaE~s~T~R--Hl~EFt~Le~E~~~~~~y~evm~~~e~l~ 327 (550)
T PTZ00401 273 MVLQG-DV-PRVFEVGPVFRSENSNTHR--HLTEFVGLDVEMRINEHYYEVLDLAESLF 327 (550)
T ss_pred HHHhc-CC-CCEEEEeCeEeCCCCCCCC--CccchhhhhhhhHhcCCHHHHHHHHHHHH
Confidence 43321 23 3899999999999764421 246999999986543 3444444444443
No 113
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=97.27 E-value=0.00096 Score=73.24 Aligned_cols=34 Identities=9% Similarity=0.013 Sum_probs=30.5
Q ss_pred chHHHHHHHHHHHHHHHHhcceeeeeeecccChh
Q 010413 66 WAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPT 99 (511)
Q Consensus 66 ~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~ 99 (511)
.-++++..|...+++.|.+.||.+|.||+|...+
T Consensus 213 avlRiRs~l~~a~r~ff~~~gF~eI~TPiit~s~ 246 (586)
T PTZ00425 213 SVIRIRNALAIATHLFFQSRGFLYIHTPLITTSD 246 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEeeCCeecccC
Confidence 3578999999999999999999999999997654
No 114
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=97.20 E-value=0.00092 Score=64.93 Aligned_cols=121 Identities=11% Similarity=0.094 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHhcceeeeeeecccChh-hhhhhhhcccCCCc--------ceeeEeccCCCCCCCceeecCCCccccc
Q 010413 71 WETMQKFFDAEIKKMKIQNCYFPLFVSPT-VLQKEKDHIEGFAP--------EVAWVTKSGESDLEVPIAIRPTSETVMY 141 (511)
Q Consensus 71 ~~~I~~~~~~~~~~~G~~ev~tP~l~~~~-l~~~~sg~~~~f~~--------emy~~~~~g~~~l~~~l~LRPt~e~~~~ 141 (511)
.+.+.+.+++.+...||+|+.|+.|.+.+ .+.+ -+ +.+ +.+.+.. ++ .-+|||+.-|++.
T Consensus 3 ~~~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~~~~-~~----~~~~~~~~~~~~~v~l~N----P~--~~~LR~sLlp~LL 71 (218)
T cd00496 3 LNKVIEEIEDIFVSMGFTEVEGPEVETDFYNFDA-LN----IPQDHPARDMQDTFYIND----PA--RLLLRTHTSAVQA 71 (218)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCcccccchhhhh-cC----CCCCCcccccCceEEECC----Cc--eEEEeccCcHHHH
Confidence 45678889999999999999999998873 3321 11 111 1122221 11 3689999988887
Q ss_pred hhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhhh
Q 010413 142 PYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFL 215 (511)
Q Consensus 142 ~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~lg 215 (511)
...+.+ ..|+|+|++|+|||.+.. ... +..||++.++...+.. ++ +..+..+.+.+++.++
T Consensus 72 ~~l~~N-----~~~~~lFEiG~Vf~~~~~-~~~--~~~E~~~l~~~~~g~~---~d--f~dlkg~ve~ll~~l~ 132 (218)
T cd00496 72 RALAKL-----KPPIRIFSIGRVYRNDEI-DAT--HLPEFHQIEGLVVDKG---LT--FADLKGTLEEFAKELF 132 (218)
T ss_pred HHHHhc-----CCCeeEEEEcCeEECCCC-CCC--cCCccEEEEEEEECCC---CC--HHHHHHHHHHHHHHhc
Confidence 665554 579999999999998742 223 3459999988876632 11 2333444577777766
No 115
>PF12745 HGTP_anticodon2: Anticodon binding domain of tRNAs; InterPro: IPR024435 This is an anticodon binding domain, found largely on Gcn2 proteins which bind tRNA to down regulate translation in certain stress situations [].; GO: 0000049 tRNA binding
Probab=97.10 E-value=0.001 Score=66.63 Aligned_cols=97 Identities=19% Similarity=0.207 Sum_probs=79.7
Q ss_pred eeEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeee-cCCCCCCCCCCCCcccccCceeEeeeCccc------ccCCc
Q 010413 314 VQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANM-DSRDNYSPGWKYSHWEMKGVPLRIEIGPKD------LAKNQ 386 (511)
Q Consensus 314 ~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~-D~~~~~~lg~k~~~ae~~giP~~iivG~~E------~e~~~ 386 (511)
.+|.|+..+. .-+.....+|.+.|.++||++++ .+.. .++-..+.++...||+++|+|=+++ -..+.
T Consensus 6 CDVLV~S~~~-----~~L~~~~~~iv~~LW~~gIsAd~~~~~~-~S~Eel~~~~~~~gi~wiViikq~~~~~~~~~~~k~ 79 (273)
T PF12745_consen 6 CDVLVCSFGP-----SSLRTEGIEIVQELWAAGISADLMYDAS-PSQEELQSYCREDGISWIVIIKQKEKSSSSKSKYKP 79 (273)
T ss_pred ceEEEEeCCh-----hHHHHHHHHHHHHHHHCCCceEeccccC-CCHHHHHHHHHHCCCCEEEEEecccccccCCCccCc
Confidence 5788888873 23448899999999999999999 3333 4899999999999999999997754 22345
Q ss_pred EEEEEccCCCccccccchHHHHHHHHHHHH
Q 010413 387 VRAVRRDNGAKVDLPRSSLVERIKELLDEI 416 (511)
Q Consensus 387 Vtvr~r~~~ek~~v~~~el~~~i~~~l~~~ 416 (511)
|.||+..+++...|+.+||+..+...+.+.
T Consensus 80 lKVK~l~~~~e~dv~~~eLv~~l~~ei~~r 109 (273)
T PF12745_consen 80 LKVKSLEKKKETDVDRDELVDWLQQEIRER 109 (273)
T ss_pred eEEeccCCCcccccCHHHHHHHHHHHHHhh
Confidence 999999999999999999999988887654
No 116
>KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=96.47 E-value=0.0034 Score=65.69 Aligned_cols=107 Identities=16% Similarity=0.180 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhhh
Q 010413 68 MSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKW 147 (511)
Q Consensus 68 ~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~ 147 (511)
..++.+|++++|+.+...||.||.||++... ..|-.. .| .+|+.. +++-+++||=..|- +.+..
T Consensus 225 f~~RakII~~iRkfld~rgFlEVETPmmn~i-----aGGA~A--kP---FIT~hn--dldm~LylRiAPEL----~lK~L 288 (560)
T KOG1885|consen 225 FRIRAKIISYIRKFLDSRGFLEVETPMMNMI-----AGGATA--KP---FITHHN--DLDMDLYLRIAPEL----YLKML 288 (560)
T ss_pred HHHHHHHHHHHHHHhhhcCceEecchhhccc-----cCcccc--Cc---eeeccc--ccCcceeeeechHH----HHHHH
Confidence 5678899999999999999999999998641 122111 11 245543 35567888755442 23333
Q ss_pred hhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhh
Q 010413 148 IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEA 196 (511)
Q Consensus 148 ~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a 196 (511)
+-+-- -|+|++|..||+|-- -+.---||+-+|++.+.++-++.
T Consensus 289 vVGGl---drVYEIGr~FRNEGI---DlTHNPEFTTcEfY~AYady~dl 331 (560)
T KOG1885|consen 289 VVGGL---DRVYEIGRQFRNEGI---DLTHNPEFTTCEFYMAYADYEDL 331 (560)
T ss_pred HhccH---HHHHHHHHHhhhcCc---ccccCCCcchHHHHHHHhhHHHH
Confidence 33322 289999999999942 23355689999988755554433
No 117
>KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=96.15 E-value=0.012 Score=60.72 Aligned_cols=108 Identities=19% Similarity=0.144 Sum_probs=74.9
Q ss_pred chHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCC----ccccc
Q 010413 66 WAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTS----ETVMY 141 (511)
Q Consensus 66 ~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~----e~~~~ 141 (511)
.-++++..+...+.+.|.+.+|..|.||++...+- . + +-|||.++-.- +....+.=||+- ...+.
T Consensus 130 av~RvRs~~~~a~h~ffq~~~F~~i~tPiiTt~DC--E------G-aGE~F~vtt~~--d~~~~fFg~p~fLTVSgQLhl 198 (446)
T KOG0554|consen 130 AVLRVRSALAFATHSFFQSHDFTYINTPIITTNDC--E------G-AGEVFQVTTLT--DYSKDFFGRPAFLTVSGQLHL 198 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHcCceEecCcEeeccCC--C------C-CcceEEEEecC--cccccccCCceEEEEeceehH
Confidence 45789999999999999999999999999987653 1 1 34788876421 112344445543 22222
Q ss_pred hhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccCh
Q 010413 142 PYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATK 193 (511)
Q Consensus 142 ~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~ 193 (511)
..++-. | =+.|-+|+.||.|.+.+.- -+-||+|.|++++|++.
T Consensus 199 E~~a~~------L-srvyTfgP~FRAEnS~tsR--HLAEFwMlEaE~AF~~s 241 (446)
T KOG0554|consen 199 EAMACA------L-SRVYTFGPTFRAENSHTSR--HLAEFWMLEAELAFAES 241 (446)
T ss_pred HHHHhh------h-cceEeeccceecccCCchh--HHhhhhhhhhHHHHHHH
Confidence 222211 1 2788999999999775443 56799999999999883
No 118
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=96.10 E-value=0.01 Score=68.87 Aligned_cols=133 Identities=15% Similarity=0.052 Sum_probs=99.8
Q ss_pred EEeccchHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCcccc
Q 010413 61 YIIRPWAMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVM 140 (511)
Q Consensus 61 ~~~~P~g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~ 140 (511)
..+.|.-..+++.+...+.++|+++|+.++.||-+....- - ..+..+.+.+.|.+ +..+.|-.+...++
T Consensus 925 ~~~~~~~~~l~~~v~e~~~~ifr~Hga~~l~tpp~~~~~~-----~--~~~~~~~v~~ld~s----G~~v~Lp~DLr~pf 993 (1351)
T KOG1035|consen 925 IQYTEINNELREYVVEEVVKIFRKHGAIELETPPLSLRNA-----C--AYFSRKAVELLDHS----GDVVELPYDLRLPF 993 (1351)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhcceeccCCccccccc-----c--chhccceeeeecCC----CCEEEeeccccchH
Confidence 4667778888999999999999999999999995543221 1 13456677787777 47888877777666
Q ss_pred chhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHH-HHHHHHHhh
Q 010413 141 YPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL-ELYRRIYEE 213 (511)
Q Consensus 141 ~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l-~~~~~i~~~ 213 (511)
+++...+. .+-+|.|.++.|||.+. ...| +|+++++.+|++.+..-.++|++.++ ++...+|.+
T Consensus 994 ar~vs~N~----~~~~Kry~i~rVyr~~~-~~hP----~~~~ec~fDii~~t~sl~~AE~L~vi~Ei~~~~l~~ 1058 (1351)
T KOG1035|consen 994 ARYVSRNS----VLSFKRYCISRVYRPAI-HNHP----KECLECDFDIIGPTTSLTEAELLKVIVEITTEILHE 1058 (1351)
T ss_pred HHHhhhch----HHHHHHhhhheeecccc-cCCC----ccccceeeeEecCCCCccHHHHHHHHHHHHHHHhcc
Confidence 66655542 45689999999999985 3345 89999999999888777889987766 555556654
No 119
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=96.09 E-value=0.017 Score=61.62 Aligned_cols=117 Identities=15% Similarity=0.162 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhhh
Q 010413 68 MSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKW 147 (511)
Q Consensus 68 ~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~ 147 (511)
...+-+|++.+|+.+...||-||.||++-+. . .|-. .--| +|+.+ .++-+++||=..| .+.++.
T Consensus 180 f~~Rs~ii~~iR~fl~~~gFlEVETP~lq~i--~---GGA~----ArPF-~ThhN--ald~dlyLRIApE----LyLKRl 243 (502)
T COG1190 180 FIKRSKIIRAIREFLDDRGFLEVETPMLQPI--P---GGAA----ARPF-ITHHN--ALDMDLYLRIAPE----LYLKRL 243 (502)
T ss_pred HHHHHHHHHHHHHHHHHCCCeEecccccccc--C---CCcc----cccc-eeeec--ccCCceEEeeccH----HHHHHH
Confidence 4567789999999999999999999999762 1 2211 1112 34432 2457888986665 344555
Q ss_pred hhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhh
Q 010413 148 IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEE 213 (511)
Q Consensus 148 ~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~ 213 (511)
+..- + =|+|++|.+||+|--.++ ---||++.|.+.+.++- ..++++.+.+++.
T Consensus 244 iVGG--~-erVfEIgr~FRNEGid~t---HNPEFTmlE~Y~AYaDy-------~D~m~ltE~Li~~ 296 (502)
T COG1190 244 IVGG--F-ERVFEIGRNFRNEGIDTT---HNPEFTMLEFYQAYADY-------EDLMDLTEELIKE 296 (502)
T ss_pred HhcC--c-hhheeeccccccCCCccc---cCcchhhHHHHHHHhHH-------HHHHHHHHHHHHH
Confidence 5442 2 289999999999943222 34589999999755544 4445555555544
No 120
>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.63 E-value=0.017 Score=59.55 Aligned_cols=102 Identities=17% Similarity=0.103 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhhh
Q 010413 68 MSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKW 147 (511)
Q Consensus 68 ~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~ 147 (511)
++|..-|...+|+.+...||.||-||-|+..+- +. ..++|.++--+ .+-+|.- --.+|++.
T Consensus 228 Friq~gvc~~FRe~L~~kgF~EIhTpKli~asS---EG------GanvF~v~Yfk-----~~A~LAQ-----SPQLyKQM 288 (533)
T KOG0556|consen 228 FRIQAGVCFAFREYLRSKGFVEIHTPKLIGASS---EG------GANVFRVSYFK-----QKAYLAQ-----SPQLYKQM 288 (533)
T ss_pred eehHHHHHHHHHHHHHhcCcceecccccccccC---CC------CceeEEEEecc-----Ccchhhc-----ChHHHHHH
Confidence 456778899999999999999999999976442 12 35677776443 2223311 11234433
Q ss_pred hhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccC
Q 010413 148 IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFAT 192 (511)
Q Consensus 148 ~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~ 192 (511)
..- .|+ -|+|++|+|||.|-+.+.- -+-||.-.|++..++.
T Consensus 289 aI~-gdf-~rVyeIGpVfRAEdSnthR--hltEFvGLD~EMaf~~ 329 (533)
T KOG0556|consen 289 AIC-GDF-ERVYEIGPVFRAEDSNTHR--HLTEFVGLDLEMAFNE 329 (533)
T ss_pred HHh-cch-hheeeecceeeccccchhh--hhHHhhCcchhhHHHH
Confidence 221 122 2899999999999887765 5789988888876654
No 121
>KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=94.74 E-value=0.093 Score=53.65 Aligned_cols=166 Identities=17% Similarity=0.146 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCc---------ceeeEecc--------------------
Q 010413 71 WETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAP---------EVAWVTKS-------------------- 121 (511)
Q Consensus 71 ~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~---------emy~~~~~-------------------- 121 (511)
..+|..-+|++|-+.||.|+-|-..+..+.|. -. .-|.| +-|.+.+-
T Consensus 214 LmKvR~eFRqiF~emGFsEMptn~yVEssFWN--FD--ALfqPQqHpARDahDTFfl~~Pa~s~~~p~dY~~rVk~vH~~ 289 (483)
T KOG2784|consen 214 LMKVREEFRQIFFEMGFSEMPTNNYVESSFWN--FD--ALFQPQQHPARDAHDTFFLKDPATSTKFPEDYLERVKAVHEQ 289 (483)
T ss_pred HHHHHHHHHHHHHHccccccccccchhhcccc--ch--hhcCcccCCccccccceEecChhhcccCCHHHHHHHHHHHhc
Confidence 46788889999999999999998888777772 11 12222 23333321
Q ss_pred CC-C--------CC--CCceeecCCCccccchhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccc
Q 010413 122 GE-S--------DL--EVPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAF 190 (511)
Q Consensus 122 g~-~--------~l--~~~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~ 190 (511)
|+ . ++ -+...||--.+..-+++.-+..+. .--|-|++.|-.|||+|+-.. .-+-||+|.|+-++.
T Consensus 290 G~ygs~GY~y~wk~eEaqKnvLRTHTTavSArmLy~LAk~-~f~p~K~FSIDrVFRNEtvDa---THLAEFHQVEGviad 365 (483)
T KOG2784|consen 290 GGYGSIGYRYNWKLEEAQKNVLRTHTTAVSARMLYRLAKK-GFKPAKYFSIDRVFRNETVDA---THLAEFHQVEGVIAD 365 (483)
T ss_pred CCcCCcccCCCCCHHHHHHHHHhhhhHHhhHHHHHHHHhC-CCCcccccchhhhhhccccch---HHHHHHhhhceeeec
Confidence 10 0 01 135667755554444443332222 135999999999999995322 267899999999843
Q ss_pred cChhhhHHHHHHHHHHHHHHHhhhhccccccccccccccccCccce-eeEEEee--cCCCccccccccc
Q 010413 191 ATKSEADDEVLQILELYRRIYEEFLAVPVIKGKKSELEKFAGGLYT-TTVEAFI--PNTGRGIQGATSH 256 (511)
Q Consensus 191 ~~~e~a~~e~~~~l~~~~~i~~~lg~ip~~~g~~~~~ek~~ga~y~-~~ie~~~--p~~gr~lq~gt~~ 256 (511)
. --.-.. ++.++..+|..+|+... -.++ ++.-|| |..+.+. ..+.+.++||.+=
T Consensus 366 ~--gltLgd---Lig~l~~ff~~lg~tnl--rfKP-----aynpYtepsmeif~yh~gl~kwvEvgnSg 422 (483)
T KOG2784|consen 366 K--GLTLGD---LIGILMEFFTKLGATNL--RFKP-----AYNPYTEPSMEIFSYHHGLFKWVEVGNSG 422 (483)
T ss_pred C--CCcHHH---HHHHHHHHHhccCCccc--cccC-----CCCCCCCceeEEEEeccccceEEEEcCCC
Confidence 2 222223 44555888887763211 1111 223344 5566654 5667778877643
No 122
>KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.57 E-value=0.053 Score=55.88 Aligned_cols=120 Identities=16% Similarity=0.140 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhhh
Q 010413 68 MSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKW 147 (511)
Q Consensus 68 ~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~ 147 (511)
.+++..+.+.+|+.+...||.||-.|.++.+.+ +.| ..+|.+.--| ++-+|--. ..+|-..
T Consensus 243 LK~Ra~~lr~~Rd~y~~~~ytEVtPPtmVQTQV---EGG------sTLFkldYyG-----EeAyLTQS-----SQLYLEt 303 (545)
T KOG0555|consen 243 LKARAALLRAMRDHYFERGYTEVTPPTMVQTQV---EGG------STLFKLDYYG-----EEAYLTQS-----SQLYLET 303 (545)
T ss_pred HHHHHHHHHHHHHHHHhcCceecCCCceEEEEe---cCc------ceEEeecccC-----chhhccch-----hHHHHHH
Confidence 567888999999999999999999999998776 233 2344443333 33333111 1223222
Q ss_pred hhcCCCCcc--ccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHH-HHHHHHHhh
Q 010413 148 IRGHRDLPL--KLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQIL-ELYRRIYEE 213 (511)
Q Consensus 148 ~~s~r~LPl--kl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l-~~~~~i~~~ 213 (511)
-||- .+|.|...||.|++.++- -+.||+..|++..|.+-++..+-+..++ +...+++++
T Consensus 304 -----clpAlgdvy~I~~SyRAEkSrTRR--HLsEytHVEaE~afltfd~ll~~iE~lvc~~vdr~l~d 365 (545)
T KOG0555|consen 304 -----CLPALGDVYCIQQSYRAEKSRTRR--HLSEYTHVEAECAFLTFDDLLDRIEALVCDSVDRLLED 365 (545)
T ss_pred -----hhhhcCceeEecHhhhhhhhhhhh--hhhhheeeeeecccccHHHHHHHHHHHHHHHHHHHHhC
Confidence 1332 588999999999886665 5789999999999999888766665443 566666654
No 123
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=94.06 E-value=0.12 Score=57.33 Aligned_cols=131 Identities=18% Similarity=0.170 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHHHHHHHhcceeeeeeecccChhh-hhhhhhcccCCCc--ceeeEeccCCCCCCCceeecCCCccccchh
Q 010413 67 AMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTV-LQKEKDHIEGFAP--EVAWVTKSGESDLEVPIAIRPTSETVMYPY 143 (511)
Q Consensus 67 g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l-~~~~sg~~~~f~~--emy~~~~~g~~~l~~~l~LRPt~e~~~~~~ 143 (511)
.....+.+.+.+++.+...||+|+.|..|.+.+. +.+ -+ +.+ +...+..- -..+.-+||++.-+++...
T Consensus 357 ~~~~~~~~~~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~-~~----~~~~~~~i~l~NP---ls~e~svLRtsLlpgLL~~ 428 (552)
T PRK09616 357 RLHPIEKLERAIRDLMVGLGFQEVMNFTLTSEEVLFEK-MN----LEPEEDYVEVLNP---ISEDYTVVRTSLLPSLLEF 428 (552)
T ss_pred CCChHHHHHHHHHHHHHhCCcceeccceEechHHHHHH-hC----CCCCCCeEEEcCC---CccchheEeccchHHHHHH
Confidence 4445677788899999999999999999998865 532 11 112 23333321 1135668999999999888
Q ss_pred hhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhhh
Q 010413 144 YSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFL 215 (511)
Q Consensus 144 ~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~lg 215 (511)
.+.+. ++..|+++|++|+||+.+..+.. ..+|+++..+-+.+. ..+ +..+..+.+.++..+|
T Consensus 429 ~~~N~--~~~~~~~lFEiG~Vf~~~~~~~~---~~~e~~~l~~~~~g~---~~d--f~dlKg~ve~ll~~lg 490 (552)
T PRK09616 429 LSNNK--HREYPQKIFEIGDVVLIDESTET---GTRTERKLAAAIAHS---EAS--FTEIKSVVQALLRELG 490 (552)
T ss_pred HHhcc--CCCCCeeEEEeeEEEecCCcccc---CcchhhEEEEEEECC---CCC--HHHHHHHHHHHHHHcC
Confidence 88776 34679999999999987632111 235777766655443 222 3334444577777776
No 124
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=93.30 E-value=0.043 Score=56.26 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhh
Q 010413 67 AMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQK 103 (511)
Q Consensus 67 g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~ 103 (511)
.--+++.|+ .+|+.+-+.||.|+.-|+++...-..+
T Consensus 46 ~Hpl~~TIq-~lReAYLr~GF~EmvNPlivde~evyk 81 (536)
T COG2024 46 PHPLYETIQ-RLREAYLRMGFSEMVNPLIVDEEEVYK 81 (536)
T ss_pred cCcHHHHHH-HHHHHHHHhhHHHhcCccccCHHHHHH
Confidence 334555544 578888899999999999988765545
No 125
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=90.60 E-value=0.22 Score=47.50 Aligned_cols=88 Identities=11% Similarity=0.070 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCc-ceeeEeccCCCCCCCceeecCCCccccchhhhhhhhc
Q 010413 72 ETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAP-EVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRG 150 (511)
Q Consensus 72 ~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~-emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~~s 150 (511)
+.+.+.+++.+...||.|+.|..|.+.+.+.. . .+.. +...+..- -..+.=+||++.-|++....+.+.+
T Consensus 3 ~~~~~~ir~~L~~~G~~E~~tys~~~~~~~~~-~----~~~~~~~i~l~NP---is~e~~~lR~sLlp~LL~~~~~N~~- 73 (198)
T cd00769 3 QKLERKLRRLLAGLGFQEVITYSLTSPEEAEL-F----DGGLDEAVELSNP---LSEEYSVLRTSLLPGLLDALARNLN- 73 (198)
T ss_pred hHHHHHHHHHHHHCCCceeecccCCCHHHHHh-c----cCCCCCeEEEcCC---CchhHHHHHHHHHHHHHHHHHHHhc-
Confidence 45677889999999999999999998865532 1 1111 23333321 0134557999998888887777754
Q ss_pred CCCCccccccccceEeee
Q 010413 151 HRDLPLKLNQWCNVVRWE 168 (511)
Q Consensus 151 ~r~LPlkl~q~g~vfR~E 168 (511)
++..|+++|++|+||..+
T Consensus 74 ~~~~~~~lFEiG~vf~~~ 91 (198)
T cd00769 74 RKNKPLRLFEIGRVFLKD 91 (198)
T ss_pred CCCCCEeEEEeEeEEecC
Confidence 346899999999999654
No 126
>PLN02788 phenylalanine-tRNA synthetase
Probab=89.29 E-value=0.9 Score=48.03 Aligned_cols=108 Identities=12% Similarity=0.081 Sum_probs=62.8
Q ss_pred cchHHHHHHHHHHHHHHHHhc---ceeeee--eecccChhhhh---hhhhcccCCCcceeeEeccCCCCCCCceeecCCC
Q 010413 65 PWAMSIWETMQKFFDAEIKKM---KIQNCY--FPLFVSPTVLQ---KEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTS 136 (511)
Q Consensus 65 P~g~~i~~~I~~~~~~~~~~~---G~~ev~--tP~l~~~~l~~---~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~ 136 (511)
+....-...+.+.|++.|... ||+.+. .|+.....-|. --..|-..=..+-|++. +.+.||-=.
T Consensus 64 ~~~~HPl~~~~~~i~~~f~~~~~~gf~~~~~~~~iv~~~~NFD~L~~P~dHPaR~~~DTfy~~--------~~~lLRTHT 135 (402)
T PLN02788 64 RRPDHPLGILKNAIYDYFDENYSNKFKKFDDLSPIVSTKQNFDDVLVPPDHVSRSYNDTYYVD--------AQTVLRCHT 135 (402)
T ss_pred CCCCChHHHHHHHHHHHHhhcccCCcEEecCCCCccchhhhhhhhCCCCCCCccCccceEEec--------CCccccCCC
Confidence 334445566777777777776 899988 45443222221 11122211112345553 456787544
Q ss_pred ccccchhhhhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccc
Q 010413 137 ETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAF 190 (511)
Q Consensus 137 e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~ 190 (511)
++.-.+++.+ ..| ++...|.|||+|.-... -+.+|+|.|+-.++
T Consensus 136 Sa~q~~~l~~------~~~-~~~~~g~VyRrD~iD~t---H~p~FhQ~EG~~v~ 179 (402)
T PLN02788 136 SAHQAELLRA------GHT-HFLVTGDVYRRDSIDAT---HYPVFHQMEGVRVF 179 (402)
T ss_pred cHHHHHHHHh------CCC-cEEEEeeEeecCCCCcc---cCccceeEEEEEEe
Confidence 4444444443 124 89999999999953222 56789999999876
No 127
>PF09181 ProRS-C_2: Prolyl-tRNA synthetase, C-terminal; InterPro: IPR015264 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found predominantly found in prolyl-tRNA synthetases from archaeal Methanococci species. It contains a zinc binding site, and adopts a structure consisting of alpha helices and antiparallel beta sheets arranged in 2 layers, in a beta-alpha-beta-alpha-beta motif []. ; GO: 0000166 nucleotide binding, 0004827 proline-tRNA ligase activity, 0005524 ATP binding, 0006433 prolyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1NJ8_C.
Probab=87.44 E-value=0.77 Score=34.98 Aligned_cols=53 Identities=21% Similarity=0.324 Sum_probs=31.2
Q ss_pred hhHHHHHhcC-CceEEecCCCchhhhHHHHhhccccccccccccccCCCCCCCCCCcccccCCCcceEEeeeccC
Q 010413 438 WDEFVEALGQ-RKMILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEIPEGTLCFASGKPAKRWSYWGRSY 511 (511)
Q Consensus 438 ~~e~~~~~~~-~~~~~~~wc~~~~ce~~ik~~~~~~~~~~~~~cip~~~~~~~~~~~C~~~g~~a~~~~~~~rsY 511 (511)
.|+++++|.+ +|++++|+..+.=. +++++.. .|+++|+- - .+.+.|.-+||+|
T Consensus 15 ~e~iK~~L~ekrgviLiPy~e~iYn-EEfEe~i-----dAsvLG~t------------~---y~G~kYIsiArTY 68 (68)
T PF09181_consen 15 IEKIKEILSEKRGVILIPYDESIYN-EEFEEKI-----DASVLGET------------E---YEGKKYISIARTY 68 (68)
T ss_dssp --HHHHHCTTT-SEEEEE--GGG-S-HHHHHHH-----SS-EEEEE------------E---SSSSEEEEEE-B-
T ss_pred HHHHHHHHHhcCCEEEEeCcHHHhh-HHHHhhh-----CceEeeeE------------E---ecCcEEEEEEeeC
Confidence 3567888865 79999999877644 4577777 89999863 1 1224577788877
No 128
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=84.34 E-value=0.79 Score=49.67 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=29.9
Q ss_pred ceeecCCCccccchhhhhhhhcCCCCccccccccceEeee
Q 010413 129 PIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWE 168 (511)
Q Consensus 129 ~l~LRPt~e~~~~~~~~~~~~s~r~LPlkl~q~g~vfR~E 168 (511)
.-+||++..+++....+.++. ++..|+++|++|+|||.+
T Consensus 183 ~svLRtSLlPGLL~tLs~Nl~-Rg~~piRLFEIGRVFr~d 221 (529)
T PRK06253 183 RLTLRSHMTSGWFITLSSLLE-KRPLPIKLFSIDRCFRRE 221 (529)
T ss_pred cCccccchHHHHHHHHHHHHh-CCCCCEEEEEEeeEEecC
Confidence 346888888777666666554 457899999999999875
No 129
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=76.32 E-value=2.7 Score=46.57 Aligned_cols=131 Identities=15% Similarity=0.069 Sum_probs=78.9
Q ss_pred hHHHHHHHHHHHHHHHHhcceeeeeeecccChhhh-hhhhhcccCCCc-ceeeEeccCCCCCCCceeecCCCccccchhh
Q 010413 67 AMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVL-QKEKDHIEGFAP-EVAWVTKSGESDLEVPIAIRPTSETVMYPYY 144 (511)
Q Consensus 67 g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~-~~~sg~~~~f~~-emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~ 144 (511)
+....+.+.+.+++.+...||+|+.|-.|.+.+.+ .+ - ++.+ +...+..-- ..+.=+||++.-+++....
T Consensus 360 ~~~~~~~~~~~ir~~L~~~Gf~E~itysf~s~~~~~~~-~----~~~~~~~v~l~NPi---s~e~s~lR~SLlp~LL~~~ 431 (551)
T TIGR00471 360 RLKPLNKVSDIIREIMVGLGFQEVIPLTLTSEEVNFKR-M----RIEDNNDVKVANPK---TLEYTIVRTSLLPGLLETL 431 (551)
T ss_pred CcChHHHHHHHHHHHHHhCCceeeccceEccHHHHHHH-h----ccCCCCcEEeCCCC---chhhhHhHhhhHHHHHHHH
Confidence 34446777888999999999999999999887433 21 1 1221 222333210 1345589999998888877
Q ss_pred hhhhhcCCCCccccccccceEeeeecCCCCcccchhhhcccCcccccChhhhHHHHHHHHHHHHHHHhhhh
Q 010413 145 SKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEVLQILELYRRIYEEFL 215 (511)
Q Consensus 145 ~~~~~s~r~LPlkl~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~lg 215 (511)
+.+. ++..|+++|++|.||...... . .+.+++...-+-+.+. .++ +..+....+.++..++
T Consensus 432 ~~N~--~~~~~~~lFEiG~Vf~~~~~~--~-~~e~~~~~l~~~~~g~---~~d--f~d~Kg~ve~ll~~l~ 492 (551)
T TIGR00471 432 SENK--HHELPQKIFEIGDVVVKDDKS--E-TRSRVVTKLAVGITHS---EAN--FNEIKSIVAALARELG 492 (551)
T ss_pred Hhcc--cCCCCeeEEEEEEEEEcCCcc--c-cccceeeEEEEEEECC---CCC--HHHHHHHHHHHHHHcC
Confidence 7776 457899999999999543111 1 1333333333322221 222 3334444577777776
No 130
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain
Probab=73.00 E-value=3.7 Score=46.04 Aligned_cols=93 Identities=11% Similarity=0.039 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHhcceeeeeeecccChhh-hhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhh
Q 010413 68 MSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTV-LQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSK 146 (511)
Q Consensus 68 ~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l-~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~ 146 (511)
..-.+.+.+.+|+.+...||+|+.|-.|.+.+. +.+ -+. +.-..+...+..- ...+.=+||++.=|++....+.
T Consensus 396 ~~~~~~~~~~iR~~l~~~Gf~Ev~t~sl~s~~~~~~~-~~~-~~~~~~~v~I~NP---~s~e~~vlRtSLlPgLL~~l~~ 470 (597)
T PLN02265 396 QQPLNQFSDLLRAEVAMAGFTEVLTWILCSHKENFAM-LNR-EDDGNSAVIIGNP---RSADFEVVRTSLLPGLLKTLGH 470 (597)
T ss_pred CCHHHHHHHHHHHHHHHCCceeeeceeeCChHHHHHh-hcC-CccCCceEEECCC---cchhHHHHHHhhHHHHHHHHHH
Confidence 344688888999999999999999999998754 532 111 1000122223211 1124457899888887776666
Q ss_pred hhhcCCCCccccccccceEee
Q 010413 147 WIRGHRDLPLKLNQWCNVVRW 167 (511)
Q Consensus 147 ~~~s~r~LPlkl~q~g~vfR~ 167 (511)
+.+ +.+|+|+|++|.||-.
T Consensus 471 N~~--~~~p~klFEiG~V~~~ 489 (597)
T PLN02265 471 NKD--APKPIKLFEVSDVVLL 489 (597)
T ss_pred hhc--CCCCeeEEEeEeEEec
Confidence 543 3569999999999954
No 131
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=68.74 E-value=7.4 Score=36.08 Aligned_cols=51 Identities=18% Similarity=0.376 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHhcceeccChhHHHHHhcCCceEEecCCCchhhhHHHHhhccccccccccccccCCCCCCCCCC
Q 010413 413 LDEIQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEIPEGT 492 (511)
Q Consensus 413 l~~~~~~l~~~a~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~wc~~~~ce~~ik~~~~~~~~~~~~~cip~~~~~~~~~~ 492 (511)
.+.+|..||.++++..++ |++-++|+||- +..+ +. + .
T Consensus 114 ~Ek~H~~~~~~~Le~~~~-----------------~~~~vC~vCGy------------------~~~g---e~----P-~ 150 (166)
T COG1592 114 AEKRHAEMFRGLLERLEE-----------------GKVWVCPVCGY------------------THEG---EA----P-E 150 (166)
T ss_pred HHHHHHHHHHHHHHhhhc-----------------CCEEEcCCCCC------------------cccC---CC----C-C
Confidence 455677777777666544 34888999953 3332 11 2 3
Q ss_pred cccccCCCcceEEe
Q 010413 493 LCFASGKPAKRWSY 506 (511)
Q Consensus 493 ~C~~~g~~a~~~~~ 506 (511)
+|+.||-|..+...
T Consensus 151 ~CPiCga~k~~F~~ 164 (166)
T COG1592 151 VCPICGAPKEKFEK 164 (166)
T ss_pred cCCCCCChHHHhhc
Confidence 69999988765443
No 132
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=62.95 E-value=15 Score=39.49 Aligned_cols=107 Identities=9% Similarity=0.086 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhc--------ceeeeee--ecccChhhhh---hhhhcccCCCcceeeEeccCCCCCCCceeecCCCcc
Q 010413 72 ETMQKFFDAEIKKM--------KIQNCYF--PLFVSPTVLQ---KEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSET 138 (511)
Q Consensus 72 ~~I~~~~~~~~~~~--------G~~ev~t--P~l~~~~l~~---~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~ 138 (511)
..+.+.|.+.|.+. ||+.+.- |+.....-|. --..|-..=..+-|++. +...||.=..+
T Consensus 45 ~~~~~~I~~~F~~~~~~~~~~~gf~v~~~~~Pvvt~~~NFD~Ln~P~dHPaR~~~DT~Yi~--------~~~lLRTHTSa 116 (460)
T TIGR00469 45 GIIRDLIEKKFNGADNNQRGNPLFKIFDNFKPVVTTMENFDNLGFPADHPGRQKSDCYYIN--------EQHLLRAHTSA 116 (460)
T ss_pred HHHHHHHHHHHHhhhcccccCCCeEEeeCCCCccchhhhhhhcCCCCCCcccCcccceEec--------CCceeCCCCcH
Confidence 33444444555444 7887777 8443333331 12223222222345553 45678764444
Q ss_pred ccchhhhhhhhcCCCCccc--cccccceEeeeecCCCCcccchhhhcccCccccc
Q 010413 139 VMYPYYSKWIRGHRDLPLK--LNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFA 191 (511)
Q Consensus 139 ~~~~~~~~~~~s~r~LPlk--l~q~g~vfR~E~~~~~Gl~R~REF~q~e~~~~~~ 191 (511)
.-.+++++.... ..|++ +...|.|||++.-... -+..|+|.|+-.++.
T Consensus 117 ~q~~~~~~~~~~--~~~~~~~~i~~G~VYRrD~iDat---H~p~FHQ~EG~~v~~ 166 (460)
T TIGR00469 117 HELECFQGGLDD--SDNIKSGFLISADVYRRDEIDKT---HYPVFHQADGAAIRK 166 (460)
T ss_pred HHHHHHHhcccc--CCCcceeeEeecceeeCCCCccc---cCccceeeEEEEEec
Confidence 445555543221 25888 8889999999852222 456799998644443
No 133
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=62.18 E-value=6.5 Score=44.56 Aligned_cols=93 Identities=11% Similarity=0.011 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhh
Q 010413 67 AMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSK 146 (511)
Q Consensus 67 g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~ 146 (511)
+....+...+.+++.+...||+||.|-.|.+.+.... .+ ...++...+..-- ..+.-+||++.=+++....+.
T Consensus 349 ~~~~~~~~~r~vr~~l~~~G~~Evitysl~s~e~~~~-~~---~~~~~~~~l~NPi---S~e~s~mR~sLlp~LL~~~~~ 421 (650)
T COG0072 349 GLTPLQKFRRKVRRALVGLGFQEVITYSLTSPEEAKL-FG---LENDEALELANPI---SEEYSVLRTSLLPGLLEALSY 421 (650)
T ss_pred CCChHHHHHHHHHHHHHhCCcceEeeeccCCHHHHHH-hc---cCCCcceEecCCc---chhHHHHHHHHHHHHHHHHHH
Confidence 3566777888999999999999999999999887643 22 1122111121100 024457888777766666655
Q ss_pred hhhcCCCCc-cccccccceEeee
Q 010413 147 WIRGHRDLP-LKLNQWCNVVRWE 168 (511)
Q Consensus 147 ~~~s~r~LP-lkl~q~g~vfR~E 168 (511)
+. ++..| +++|++|.||-.+
T Consensus 422 N~--~r~~~~~~iFEiG~v~~~~ 442 (650)
T COG0072 422 NK--NRKNPDVRIFEIGDVFVKD 442 (650)
T ss_pred hh--ccCCCCeeEEEeeeeEecC
Confidence 54 46789 9999999999975
No 134
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional
Probab=52.78 E-value=12 Score=42.75 Aligned_cols=86 Identities=6% Similarity=0.005 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhh
Q 010413 67 AMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSK 146 (511)
Q Consensus 67 g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~ 146 (511)
+....+.+.+.+++.+...||+|+.|-.|.+.+.+. ++...+..-- ..+.=+|||+.-+++....+.
T Consensus 396 ~~~~~~~~~~~ir~~L~~~Gf~Evitysf~s~~~~~----------~~~i~l~NPi---S~e~s~lR~SLlpgLL~~~~~ 462 (704)
T CHL00192 396 RLDIDYNTRDKIRSYLRNLGLTELIHYSLVKQESFS----------KNEIKLKNPL---IKDYSTLRSSLLPGLIEAVQE 462 (704)
T ss_pred CCCHHHHHHHHHHHHHHhCCCceEecccccChhhcC----------CCcEEEeCCC---chHHHHHHHHHHHHHHHHHHH
Confidence 444567778888999999999999999998875321 1223333210 134558999988888777776
Q ss_pred hhhcCCCCccccccccceEe
Q 010413 147 WIRGHRDLPLKLNQWCNVVR 166 (511)
Q Consensus 147 ~~~s~r~LPlkl~q~g~vfR 166 (511)
+.+ +...|+++|++|.||-
T Consensus 463 N~~-r~~~~~rlFEiG~Vf~ 481 (704)
T CHL00192 463 NLK-QGNSTLEGFEIGHVFN 481 (704)
T ss_pred HHh-cCCCCEeEEEeeeeEc
Confidence 653 3457999999999993
No 135
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=47.09 E-value=1.2e+02 Score=25.20 Aligned_cols=78 Identities=8% Similarity=0.091 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHcCceeeecCCCCCCCCCCCCcccccCceeEeeeCcccccCCcEEEEEccCCC-ccccccchHHHHH
Q 010413 331 IFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNGA-KVDLPRSSLVERI 409 (511)
Q Consensus 331 ~~~~a~~i~~~Lr~~Girv~~D~~~~~~lg~k~~~ae~~giP~~iivG~~E~e~~~Vtvr~r~~~e-k~~v~~~el~~~i 409 (511)
..-.+..|.+.+++.|+.+.+..+....+...+...+...+-++|++|..+... .|..+. -..+++++.+..-
T Consensus 14 s~laa~~L~~aa~~~g~~~~ve~~~~~g~~~~l~~~~i~~Ad~vi~~~~~~~~~------~rf~gk~v~~~~~~~~l~~~ 87 (96)
T cd05569 14 TYMAAEALEKAAKKLGWEIKVETQGSLGIENELTAEDIAEADAVILAADVPVDD------ERFAGKRVYEVSVAEAIKDA 87 (96)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEecCcCccCcCCHHHHhhCCEEEEecCCCCch------hhhCCCeEEEecHHHHHHHH
Confidence 345678889999999999998865433444555555666677999999876543 333333 3455666665554
Q ss_pred HHHHH
Q 010413 410 KELLD 414 (511)
Q Consensus 410 ~~~l~ 414 (511)
...|+
T Consensus 88 ~~vl~ 92 (96)
T cd05569 88 EAVIE 92 (96)
T ss_pred HHHHH
Confidence 44443
No 136
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=44.81 E-value=21 Score=41.54 Aligned_cols=91 Identities=12% Similarity=0.064 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCC-CCceeecCCCccccchhhh
Q 010413 67 AMSIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDL-EVPIAIRPTSETVMYPYYS 145 (511)
Q Consensus 67 g~~i~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l-~~~l~LRPt~e~~~~~~~~ 145 (511)
.....+.+.+.+++.+...||+|+.|-.|.+.+...+ -+ +..+...+.. ++ .+.=+||++.-+++....+
T Consensus 485 ~~~~~~~~~~~ir~~L~~~Gf~Ev~tysf~~~~~~~~-~~----~~~~~i~l~N----Pis~e~~~lR~SLlp~LL~~~~ 555 (791)
T PRK00629 485 GLTEAQRLLRRLRRALAALGYQEVITYSFVSPEDAKL-FG----LNPEPLLLLN----PISEELSVMRTSLLPGLLEAVA 555 (791)
T ss_pred CCCHHHHHHHHHHHHHHHCCCcEEeccccCCHHHHHh-cC----CCCCeEEEeC----CCchHHHHHHHhhHHHHHHHHH
Confidence 4556677788899999999999999999998765521 11 1112222321 11 2445799998888877766
Q ss_pred hhhhcCCCCccccccccceEee
Q 010413 146 KWIRGHRDLPLKLNQWCNVVRW 167 (511)
Q Consensus 146 ~~~~s~r~LPlkl~q~g~vfR~ 167 (511)
.+.+ +...|+++|++|.||..
T Consensus 556 ~N~~-~~~~~i~lFEiG~Vf~~ 576 (791)
T PRK00629 556 YNLN-RGNKDVALFEIGRVFLP 576 (791)
T ss_pred HHHh-CCCCCEeEEeeeeeeCC
Confidence 6654 34578999999999954
No 137
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=41.78 E-value=1.8e+02 Score=25.23 Aligned_cols=81 Identities=7% Similarity=0.083 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHcCceeeecCCCCCCCCCCCCcccccCceeEeeeCcccccCCcEEEEEccCC-CccccccchHHHHHH
Q 010413 332 FDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNG-AKVDLPRSSLVERIK 410 (511)
Q Consensus 332 ~~~a~~i~~~Lr~~Girv~~D~~~~~~lg~k~~~ae~~giP~~iivG~~E~e~~~Vtvr~r~~~-ek~~v~~~el~~~i~ 410 (511)
.-.++.|.+.-++.|+.+.++.+....+..++..-+....-++|++|+.+..+. .|-.+ .-..+++++.+..-.
T Consensus 19 ~lAAeaL~kAA~~~G~~i~VE~qg~~g~~~~lt~~~i~~Ad~VIia~d~~~~~~-----~rF~gk~v~~~s~~~ai~d~~ 93 (114)
T PRK10427 19 YMAAERLEKLCQLEKWGVKIETQGALGTENRLTDEDIRRADVVLLITDIELAGA-----ERFEHCRYVQCSIYAFLREPQ 93 (114)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCcCcCCCCCHHHHHhCCEEEEEecCCCCch-----hhhCCCeEEEecHHHHHHHHH
Confidence 445677777778889999998876445566676667777889999998764221 13333 345667777776665
Q ss_pred HHHHHHH
Q 010413 411 ELLDEIQ 417 (511)
Q Consensus 411 ~~l~~~~ 417 (511)
..|+...
T Consensus 94 ~vl~~a~ 100 (114)
T PRK10427 94 RVMSAVR 100 (114)
T ss_pred HHHHHHH
Confidence 5555533
No 138
>PHA02278 thioredoxin-like protein
Probab=40.42 E-value=21 Score=30.14 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=19.1
Q ss_pred cChhHHHHHhcCCce----EEecCCCchh
Q 010413 436 KTWDEFVEALGQRKM----ILAPWCDEEE 460 (511)
Q Consensus 436 ~~~~e~~~~~~~~~~----~~~~wc~~~~ 460 (511)
+|++||.+.+++++. .-|||||.=.
T Consensus 2 ~~~~~~~~~i~~~~~vvV~F~A~WCgpCk 30 (103)
T PHA02278 2 NSLVDLNTAIRQKKDVIVMITQDNCGKCE 30 (103)
T ss_pred CCHHHHHHHHhCCCcEEEEEECCCCHHHH
Confidence 678999999976664 4479999643
No 139
>COG1852 Uncharacterized conserved protein [Function unknown]
Probab=38.16 E-value=27 Score=33.12 Aligned_cols=30 Identities=17% Similarity=0.375 Sum_probs=22.3
Q ss_pred hhHHHHHhcCCceEEecCCC-chhhhHHHHh
Q 010413 438 WDEFVEALGQRKMILAPWCD-EEEVEKDVKA 467 (511)
Q Consensus 438 ~~e~~~~~~~~~~~~~~wc~-~~~ce~~ik~ 467 (511)
.++|++....+.+++.|+|- +.+||.++-.
T Consensus 79 ~k~fkk~~~~Kr~llLPhClR~~~CeA~~t~ 109 (209)
T COG1852 79 EKDFKKIPVGKRLLLLPHCLRNPKCEAKLTP 109 (209)
T ss_pred HHHHhhCCcccEEEEchhhhcCCCCcccccc
Confidence 35677777667899999996 4689876644
No 140
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=34.87 E-value=35 Score=39.70 Aligned_cols=89 Identities=7% Similarity=-0.021 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHhcceeeeeeecccChhhhhhhhhcccCCCcceeeEeccCCCCCCCceeecCCCccccchhhhhhhhc
Q 010413 71 WETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYYSKWIRG 150 (511)
Q Consensus 71 ~~~I~~~~~~~~~~~G~~ev~tP~l~~~~l~~~~sg~~~~f~~emy~~~~~g~~~l~~~l~LRPt~e~~~~~~~~~~~~s 150 (511)
.+..++.+++.+...||+|+.|-.|.+.+.+.+ .+. + ..+....+..-- ..+.=+||++.-+++....+.+.+
T Consensus 493 ~~~~~~~~r~~L~~~Gf~Ev~tysl~s~~~~~~-~~~-~-~~~~~i~l~NPi---s~e~s~lR~SLlpgLL~~~~~N~~- 565 (798)
T TIGR00472 493 NYLLLRKLRTLLVGLGLNEVITYSLVSSEKAEK-FNF-P-KLENLVEIKNPL---SNERSVLRTSLLPSLLEVLAYNQN- 565 (798)
T ss_pred HHHHHHHHHHHHHHCCCcEEeccccCCHHHHHh-hcC-C-CCCceEEEeCCC---chHHHHHHHhhHHHHHHHHHHHHh-
Confidence 333446789999999999999999998855432 221 1 011133333211 124457999988888777666653
Q ss_pred CCCCccccccccceEe
Q 010413 151 HRDLPLKLNQWCNVVR 166 (511)
Q Consensus 151 ~r~LPlkl~q~g~vfR 166 (511)
+...|+++|++|.||.
T Consensus 566 ~~~~~~~lFEiG~V~~ 581 (798)
T TIGR00472 566 RKNKDVKIFEIGKVFA 581 (798)
T ss_pred CCCCCEeEEeeecccC
Confidence 3356899999999994
No 141
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=34.79 E-value=66 Score=26.68 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=13.5
Q ss_pred ccccccccCCCCCCCCCCcccccCCCcc
Q 010413 475 AAKTLCSPLEQPEIPEGTLCFASGKPAK 502 (511)
Q Consensus 475 ~~~~~cip~~~~~~~~~~~C~~~g~~a~ 502 (511)
.++.+++-++ ++++|..||++=.
T Consensus 67 ~~~~~~v~i~-----~~~~C~vC~k~l~ 89 (109)
T PF10367_consen 67 KLRSRSVVIT-----ESTKCSVCGKPLG 89 (109)
T ss_pred hhcCceEEEC-----CCCCccCcCCcCC
Confidence 3344555444 2346999998754
No 142
>PRK10474 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=31.34 E-value=1.8e+02 Score=23.73 Aligned_cols=78 Identities=13% Similarity=0.116 Sum_probs=48.5
Q ss_pred HHHHHHHHHHcCceeeecCCCCCCCCCCCCcccccCceeEeeeCcccccCCcEEEEEccCC-CccccccchHHHHHHHHH
Q 010413 335 CTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRRDNG-AKVDLPRSSLVERIKELL 413 (511)
Q Consensus 335 a~~i~~~Lr~~Girv~~D~~~~~~lg~k~~~ae~~giP~~iivG~~E~e~~~Vtvr~r~~~-ek~~v~~~el~~~i~~~l 413 (511)
+..|.+.-++.|+.+.++.+....+-.++..-+...+-++|++|...+.+ ..|..| .-..+++++.+..-...+
T Consensus 3 AeaL~~aA~~~G~~i~VEtqg~~g~~~~lt~~~i~~Ad~VIia~d~~i~~-----~~rf~gk~v~~~s~~~ai~~~~~vl 77 (88)
T PRK10474 3 AEALESAAKAKGWEVKVETQGSIGLENELTAEDVASADMVILTKDIGIKF-----EERFAGKTIVRVNISDAVKRADAIM 77 (88)
T ss_pred HHHHHHHHHHCCCeEEEEecCCcCcCCCCCHHHHHhCCEEEEEecCCCcc-----hhccCCCceEEecHHHHHHCHHHHH
Confidence 44566666778999998876533455666666777778999999776422 123333 334566666665555555
Q ss_pred HHHH
Q 010413 414 DEIQ 417 (511)
Q Consensus 414 ~~~~ 417 (511)
+...
T Consensus 78 ~~a~ 81 (88)
T PRK10474 78 SKIE 81 (88)
T ss_pred HHHH
Confidence 5443
No 143
>TIGR00106 uncharacterized protein, MTH1187 family. This protein has been crystallized in both Methanobacterium thermoautotrophicum and yeast, but its function remains unknown. Both crystal structures showed sulfate ions bound at the interface of two dimers to form a tetramer.
Probab=26.94 E-value=1.1e+02 Score=25.58 Aligned_cols=38 Identities=18% Similarity=0.330 Sum_probs=29.5
Q ss_pred eEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeeecCCC
Q 010413 315 QVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRD 355 (511)
Q Consensus 315 qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~ 355 (511)
++.|+|++..+ +.+-+|..++.+.|++.|++..+..-.
T Consensus 4 eisv~P~g~~~---~s~s~yVa~~i~~l~~sGl~y~~~pm~ 41 (97)
T TIGR00106 4 EVSIIPIGTVG---ASVSSYVAAAIEVLKESGLKYELHPMG 41 (97)
T ss_pred EEEEeecCCCC---CcHHHHHHHHHHHHHHcCCCeEecCCc
Confidence 57789997332 456778888999999999998887754
No 144
>PF14116 YyzF: YyzF-like protein
Probab=26.46 E-value=36 Score=24.81 Aligned_cols=14 Identities=29% Similarity=0.313 Sum_probs=11.9
Q ss_pred CcccccCCCcceEE
Q 010413 492 TLCFASGKPAKRWS 505 (511)
Q Consensus 492 ~~C~~~g~~a~~~~ 505 (511)
++|-+|+++|++.+
T Consensus 34 ~~C~~C~~~A~Y~V 47 (48)
T PF14116_consen 34 TTCEYCDQPAVYLV 47 (48)
T ss_pred CcchhhCCCceEEe
Confidence 47999999999764
No 145
>PF01910 DUF77: Domain of unknown function DUF77; InterPro: IPR002767 This entry contains several hypothetical proteins of unknown function found in archaebacteria, eukaryotes and eubacteria. The structures of YBL001c from Saccharomyces cerevisiae and its homologue MTH1187 from the archaea Methanobacterium thermoautotrophicum have been determined []. These proteins have a ferredoxin-like alpha/beta sandwich structure with anti-parallel beta-sheets. Generally, they have two domains that form a single beta-sheet dimer, where two dimers pack sheet-to-sheet into a tetramer, some proteins having an extra C-terminal helix. ; PDB: 1LXJ_A 1YQH_A 2EKY_G 2EPI_A 1VK8_D 2IBO_C 1LXN_B.
Probab=26.21 E-value=1.5e+02 Score=24.58 Aligned_cols=38 Identities=13% Similarity=0.300 Sum_probs=29.1
Q ss_pred eEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeeecCCC
Q 010413 315 QVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRD 355 (511)
Q Consensus 315 qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~ 355 (511)
.+.|+|++..+ +.+-+|..++.+.|++.|++..+-.-.
T Consensus 2 ei~v~P~g~~~---~s~~~~V~~~i~~i~~sgl~y~v~pm~ 39 (92)
T PF01910_consen 2 EISVIPIGTGG---ESVSAYVAEAIEVIKESGLKYEVGPMG 39 (92)
T ss_dssp EEEEEEESSSS---SHHHHHHHHHHHHHHTSSSEEEEETTE
T ss_pred EEEEEeCCCCC---CCHHHHHHHHHHHHHHcCCceEEcCCc
Confidence 46789998532 467788889999999999988876543
No 146
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=25.04 E-value=68 Score=27.37 Aligned_cols=28 Identities=18% Similarity=0.089 Sum_probs=21.3
Q ss_pred cceeccChhHHHHHhcCCce----EEecCCCc
Q 010413 431 CIQIVKTWDEFVEALGQRKM----ILAPWCDE 458 (511)
Q Consensus 431 ~~~~~~~~~e~~~~~~~~~~----~~~~wc~~ 458 (511)
.+..+++.++|.+++.+.+. .-+|||+.
T Consensus 5 ~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~ 36 (113)
T cd02989 5 KYREVSDEKEFFEIVKSSERVVCHFYHPEFFR 36 (113)
T ss_pred CeEEeCCHHHHHHHHhCCCcEEEEEECCCCcc
Confidence 46778899999999976543 34689984
No 147
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=23.75 E-value=3.4e+02 Score=27.07 Aligned_cols=74 Identities=22% Similarity=0.161 Sum_probs=48.2
Q ss_pred EEEEeeccCcc--chhHHHHHHHHHHHHHHHcCceeeec------CCCCCCCCCCCCcccccCceeEeeeCcccccCCcE
Q 010413 316 VIVVPVPYKDA--DTQGIFDACTATVETLCEAGICANMD------SRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQV 387 (511)
Q Consensus 316 V~Iipi~~~~~--~~~~~~~~a~~i~~~Lr~~Girv~~D------~~~~~~lg~k~~~ae~~giP~~iivG~~E~e~~~V 387 (511)
|-|||+-.|.. ..++-.+.-..|.++|...||.+.=. ..+ +.+..|++ .-|||.++=.++|.+=|-=
T Consensus 185 vNvvPVIakaDtlTleEr~~FkqrI~~el~~~~i~vYPq~~fded~ed-~~lN~kvR----~~iPFAVVGsd~e~~vnG~ 259 (336)
T KOG1547|consen 185 VNVVPVIAKADTLTLEERSAFKQRIRKELEKHGIDVYPQDSFDEDLED-KTLNDKVR----ESIPFAVVGSDKEIQVNGR 259 (336)
T ss_pred heeeeeEeecccccHHHHHHHHHHHHHHHHhcCcccccccccccchhH-HHHHHHHH----hhCCeEEecccceEEEcCe
Confidence 45677654432 22344466678999999999977543 223 34444444 5699987777788777777
Q ss_pred EEEEccC
Q 010413 388 RAVRRDN 394 (511)
Q Consensus 388 tvr~r~~ 394 (511)
.|+-|.|
T Consensus 260 ~vlGRkt 266 (336)
T KOG1547|consen 260 RVLGRKT 266 (336)
T ss_pred Eeecccc
Confidence 7777765
No 148
>COG0011 Uncharacterized conserved protein [Function unknown]
Probab=23.70 E-value=1.4e+02 Score=25.26 Aligned_cols=39 Identities=18% Similarity=0.303 Sum_probs=29.5
Q ss_pred eeEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeeecCCC
Q 010413 314 VQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRD 355 (511)
Q Consensus 314 ~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~ 355 (511)
..+.|+|++... ..+-+|..++.+.|++.|++..+..-.
T Consensus 5 v~~sviP~gt~~---~svs~yVa~~i~~lk~~glky~~~pm~ 43 (100)
T COG0011 5 VELSVIPLGTGG---PSVSKYVAEAIEILKESGLKYQLGPMG 43 (100)
T ss_pred EEEEEEecCCCC---CCHHHHHHHHHHHHHHcCCceeecCcc
Confidence 457789998533 447789999999999988877776543
No 149
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=22.46 E-value=5.6e+02 Score=26.98 Aligned_cols=110 Identities=15% Similarity=0.149 Sum_probs=65.0
Q ss_pred EEEEeeccCcc--chhHHHHHHHHHHHHHHHcCceeee--cCCCCCCCCCCCCc-cccc-CceeEeeeCcccccCCcEEE
Q 010413 316 VIVVPVPYKDA--DTQGIFDACTATVETLCEAGICANM--DSRDNYSPGWKYSH-WEMK-GVPLRIEIGPKDLAKNQVRA 389 (511)
Q Consensus 316 V~Iipi~~~~~--~~~~~~~~a~~i~~~Lr~~Girv~~--D~~~~~~lg~k~~~-ae~~-giP~~iivG~~E~e~~~Vtv 389 (511)
|-||||-.|.. ..+++...=..|.+.|...+|+|.. |..+. .. ..+.. +... -+||.||-+..+.+++.=++
T Consensus 163 vNlIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf~pyd~e~~-~~-e~~e~~~~l~~~~PFAII~S~~~~~~~~~~v 240 (373)
T COG5019 163 VNLIPVIAKADTLTDDELAEFKERIREDLEQYNIPVFDPYDPEDD-ED-ESLEENQDLRSLIPFAIIGSNTEIENGGEQV 240 (373)
T ss_pred cCeeeeeeccccCCHHHHHHHHHHHHHHHHHhCCceeCCCCcccc-ch-hhHHHHHHHhhcCCeEEEeccceeccCCcee
Confidence 67889866543 4567777888899999999999986 33221 11 11111 1223 38999988888888887445
Q ss_pred EEccCCCcccccc-----chHH--------HHHHHHHHHHHHHHHHHHHHHH
Q 010413 390 VRRDNGAKVDLPR-----SSLV--------ERIKELLDEIQESLFVAAKQRR 428 (511)
Q Consensus 390 r~r~~~ek~~v~~-----~el~--------~~i~~~l~~~~~~l~~~a~~~~ 428 (511)
+-|.- .-..|.+ .+|. +.+.++.+.-+..+|++=+...
T Consensus 241 rgR~Y-pWG~v~Idd~~hsDF~~Lr~~Li~thL~~L~~~T~~~~YE~YR~e~ 291 (373)
T COG5019 241 RGRKY-PWGVVEIDDEEHSDFKKLRNLLIRTHLQELKETTENLLYENYRTEK 291 (373)
T ss_pred eeecc-CCcceecCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55532 1222222 2332 2344555555666777655443
No 150
>PLN03194 putative disease resistance protein; Provisional
Probab=21.93 E-value=1.2e+02 Score=28.74 Aligned_cols=48 Identities=15% Similarity=0.147 Sum_probs=33.6
Q ss_pred cceeEEEEeeccCccchhHHHHHHHHHHHHHHHcCceeeecCCCCCCCCCCCCc
Q 010413 312 ASVQVIVVPVPYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSH 365 (511)
Q Consensus 312 aP~qV~Iipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~~lg~k~~~ 365 (511)
.+++|.|-.-+. +.-...+..|+..|+.+||+|.+|+.+ ...|..+..
T Consensus 25 ~~yDVFISFrG~-----DtR~~FvshL~~aL~~~GI~vF~D~~e-l~~G~~i~~ 72 (187)
T PLN03194 25 KPCDVFINHRGI-----DTKRTIATLLYDHLSRLNLRPFLDNKN-MKPGDKLFD 72 (187)
T ss_pred CCCcEEEeCCCc-----cccccHHHHHHHHHHHCCCEEEEcCcc-ccCCCcHHH
Confidence 457776654442 112356789999999999999999875 467766653
No 151
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=20.93 E-value=1.5e+02 Score=27.39 Aligned_cols=42 Identities=14% Similarity=0.195 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHcCceeeecCCCCCCCCC-CCCcccccCceeEeeeCc
Q 010413 330 GIFDACTATVETLCEAGICANMDSRDNYSPGW-KYSHWEMKGVPLRIEIGP 379 (511)
Q Consensus 330 ~~~~~a~~i~~~Lr~~Girv~~D~~~~~~lg~-k~~~ae~~giP~~iivG~ 379 (511)
...+.|..|+..|++.|+.|++-+.. .... ++.+.+ +++||.
T Consensus 13 qT~kIA~~iA~~L~e~g~qvdi~dl~--~~~~~~l~~yd------avVIgA 55 (175)
T COG4635 13 QTRKIAEYIASHLRESGIQVDIQDLH--AVEEPALEDYD------AVVIGA 55 (175)
T ss_pred cHHHHHHHHHHHhhhcCCeeeeeehh--hhhccChhhCc------eEEEec
Confidence 35678999999999999999998754 2332 455555 577773
No 152
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=20.69 E-value=68 Score=31.43 Aligned_cols=64 Identities=22% Similarity=0.249 Sum_probs=45.6
Q ss_pred cccceeEEEEeeccCcc------chhHHHHHHHHHHHHHHHcCceeeecCCCCCCCCCCCCcccccCceeEeee
Q 010413 310 RVASVQVIVVPVPYKDA------DTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEI 377 (511)
Q Consensus 310 ~laP~qV~Iipi~~~~~------~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~~lg~k~~~ae~~giP~~iiv 377 (511)
.+.|.||.+||-....- |-....+....+.+.|+++||+|.+....+ -.++..|...|++. |++
T Consensus 81 ~~kP~~vtLVPEkr~E~TTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDPd---~~qi~~A~~~GAd~-VEL 150 (234)
T cd00003 81 EVKPHQVTLVPEKREELTTEGGLDVAGQAEKLKPIIERLKDAGIRVSLFIDPD---PEQIEAAKEVGADR-VEL 150 (234)
T ss_pred HCCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCCC---HHHHHHHHHhCcCE-EEE
Confidence 35789999999653210 112245777889999999999999876432 25888999999985 454
No 153
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=20.69 E-value=70 Score=31.43 Aligned_cols=63 Identities=24% Similarity=0.207 Sum_probs=45.0
Q ss_pred ccceeEEEEeeccCcc------chhHHHHHHHHHHHHHHHcCceeeecCCCCCCCCCCCCcccccCceeEeee
Q 010413 311 VASVQVIVVPVPYKDA------DTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEI 377 (511)
Q Consensus 311 laP~qV~Iipi~~~~~------~~~~~~~~a~~i~~~Lr~~Girv~~D~~~~~~lg~k~~~ae~~giP~~iiv 377 (511)
+.|.||.+||-....- +-....+....+.+.|+++||+|.+.... --.++..|...|++. |++
T Consensus 82 vkP~~vtLVPEkr~ElTTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDP---~~~qi~~A~~~GAd~-VEL 150 (237)
T TIGR00559 82 IKPEQVTLVPEARDEVTTEGGLDVARLKDKLCELVKRFHAAGIEVSLFIDA---DKDQISAAAEVGADR-IEI 150 (237)
T ss_pred cCCCEEEECCCCCCCccCCcCchhhhCHHHHHHHHHHHHHCCCEEEEEeCC---CHHHHHHHHHhCcCE-EEE
Confidence 5689999999653210 12234567788999999999999987643 135788888999985 444
No 154
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=20.32 E-value=85 Score=25.93 Aligned_cols=26 Identities=19% Similarity=0.560 Sum_probs=19.3
Q ss_pred eccChhHHHHHhcCCce----EEecCCCch
Q 010413 434 IVKTWDEFVEALGQRKM----ILAPWCDEE 459 (511)
Q Consensus 434 ~~~~~~e~~~~~~~~~~----~~~~wc~~~ 459 (511)
.+.|.++|...+++++. .-+|||+.-
T Consensus 3 ~i~~~~~~~~~i~~~~~vvv~F~a~wC~~C 32 (102)
T cd02948 3 EINNQEEWEELLSNKGLTVVDVYQEWCGPC 32 (102)
T ss_pred EccCHHHHHHHHccCCeEEEEEECCcCHhH
Confidence 45788889998887763 457899853
Done!