BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010415
(511 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BYA|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYB|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYC|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYD|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
Length = 495
Score = 399 bits (1026), Expect = e-111, Method: Compositional matrix adjust.
Identities = 205/437 (46%), Positives = 263/437 (60%), Gaps = 59/437 (13%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YVPVYVMLPLG+++++ DP+ L QL L++ VDGVMVD WWGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
YR LFQ+V+E L LQ +MSFH+CGGNVGD V+IP+PQWV++IG++N +I++T+R G R
Sbjct: 71 AYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E LT G+D E + GRTA+E+Y DYM+SFR ++F G+I +IEVGLGP GELRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFW--------------------- 328
+YP GW++P IGEFQCYDKYL A GH W
Sbjct: 191 SYPQSQGWEFPRIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDVPESTGFFKS 250
Query: 329 -----------------------------ARGPAFEGTCI--SAKLSGIHWWYKTASHAA 357
AF G + + K+SGIHWWYK +HAA
Sbjct: 251 NGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHAA 310
Query: 358 ELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQVL 417
ELTAG+YN ++RDGY PIA ML +H LNFTC+E+R +Q D A + P+ LV QVL
Sbjct: 311 ELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSD---AKSGPQELVQQVL 367
Query: 418 NAAWDVSILVASENALPCYDREGYNKILENAKPL----NDPDGRHLSAFTYLRLSPVLTD 473
+ W I VA ENALP YD YN+I+ NAKP N P + TYLRLS L
Sbjct: 368 SGGWREDIRVAGENALPRYDATAYNQIILNAKPQGVNNNGPPKLSMFGVTYLRLSDDLLQ 427
Query: 474 GHNFIEFERFVKRMHGE 490
NF F++FV +MH +
Sbjct: 428 KSNFNIFKKFVLKMHAD 444
>pdb|1Q6C|A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With
Maltose
pdb|1WDP|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
pdb|1BFN|A Chain A, Beta-AmylaseBETA-Cyclodextrin Complex
Length = 495
Score = 399 bits (1025), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/437 (46%), Positives = 263/437 (60%), Gaps = 59/437 (13%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YVPVYVMLPLG+++++ DP+ L QL L++ VDGVMVD WWGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
YR L Q+V+E L LQ +MSFH+CGGNVGD V+IP+PQWV++IG++N +I++T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E LT G+D E + GRTA+E+Y DYM+SFR ++F G+I +IEVGLGP GELRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFW--------------------- 328
+YP GW++PGIGEFQCYDKYL A GH W
Sbjct: 191 SYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDVPESTGFFKS 250
Query: 329 -----------------------------ARGPAFEGTCI--SAKLSGIHWWYKTASHAA 357
AF G + + K+SGIHWWYK +HAA
Sbjct: 251 NGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHAA 310
Query: 358 ELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQVL 417
ELTAG+YN ++RDGY PIA ML +H LNFTC+E+R +Q D A + P+ LV QVL
Sbjct: 311 ELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSD---AKSGPQELVQQVL 367
Query: 418 NAAWDVSILVASENALPCYDREGYNKILENAKPL----NDPDGRHLSAFTYLRLSPVLTD 473
+ W I VA ENALP YD YN+I+ NA+P N P + TYLRLS L
Sbjct: 368 SGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLLQ 427
Query: 474 GHNFIEFERFVKRMHGE 490
NF F++FV +MH +
Sbjct: 428 KSNFNIFKKFVLKMHAD 444
>pdb|1UKP|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|B Chain B, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|C Chain C, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|D Chain D, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
Length = 495
Score = 399 bits (1024), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/437 (46%), Positives = 263/437 (60%), Gaps = 59/437 (13%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YVPVYVMLPLG+++++ DP+ L QL L++ VDGVMVD WWGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
YR L Q+V+E L LQ +MSFH+CGGNVGD V+IP+PQWV++IG++N +I++T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E LT G+D E + GRTA+E+Y DYM+SFR ++F G+I +IEVGLGP GELRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFW--------------------- 328
+YP GW++PGIGEFQCYDKYL A GH W
Sbjct: 191 SYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDVPESTGFFKS 250
Query: 329 -----------------------------ARGPAFEGTCI--SAKLSGIHWWYKTASHAA 357
AF G + + K+SGIHWWYK +HAA
Sbjct: 251 NGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHAA 310
Query: 358 ELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQVL 417
ELTAG+YN ++RDGY PIA ML +H LNFTC+E+R +Q D A + P+ LV QVL
Sbjct: 311 ELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSD---AKSGPQELVQQVL 367
Query: 418 NAAWDVSILVASENALPCYDREGYNKILENAKPL----NDPDGRHLSAFTYLRLSPVLTD 473
+ W I VA ENALP YD YN+I+ NA+P N P + TYLRLS L
Sbjct: 368 SGGWREYIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLLQ 427
Query: 474 GHNFIEFERFVKRMHGE 490
NF F++FV +MH +
Sbjct: 428 KSNFNIFKKFVLKMHAD 444
>pdb|1BTC|A Chain A, Three-Dimensional Structure Of Soybean Beta-Amylase
Determined At 3.0 Angstroms Resolution: Preliminary
Chain Tracing Of The Complex With Alpha-Cyclodextrin
Length = 491
Score = 398 bits (1023), Expect = e-111, Method: Compositional matrix adjust.
Identities = 205/437 (46%), Positives = 263/437 (60%), Gaps = 59/437 (13%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YVPVYVMLPLG+++++ DP+ L QL L++ VDGVMVD WWGI+E P+ Y+W
Sbjct: 7 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 66
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
YR LFQ+V+E L LQ +MSFH+CGGNVGD V+IP+PQWV++IG++N +I++T+R G R
Sbjct: 67 AYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 126
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E LT G+D E + GRTA+E+Y DYM+SFR ++F G+I +IEVGLGP GELRYP
Sbjct: 127 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 186
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFW--------------------- 328
+YP GW++P IGEFQCYDKYL A GH W
Sbjct: 187 SYPQSQGWEFPRIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDVPESTGFFKS 246
Query: 329 -----------------------------ARGPAFEGTCI--SAKLSGIHWWYKTASHAA 357
AF G + + K+SGIHWWYK +HAA
Sbjct: 247 NGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHAA 306
Query: 358 ELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQVL 417
ELTAG+YN ++RDGY PIA ML +H LNFTC+E+R +Q D A + P+ LV QVL
Sbjct: 307 ELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSD---AKSGPQELVQQVL 363
Query: 418 NAAWDVSILVASENALPCYDREGYNKILENAKPL----NDPDGRHLSAFTYLRLSPVLTD 473
+ W I VA ENALP YD YN+I+ NAKP N P + TYLRLS L
Sbjct: 364 SGGWREDIRVAGENALPRYDATAYNQIILNAKPQGVNNNGPPKLSMFGVTYLRLSDDLLQ 423
Query: 474 GHNFIEFERFVKRMHGE 490
NF F++FV +MH +
Sbjct: 424 KSNFNIFKKFVLKMHAD 440
>pdb|1UKO|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|B Chain B, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|C Chain C, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|D Chain D, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
Length = 495
Score = 398 bits (1023), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/437 (46%), Positives = 263/437 (60%), Gaps = 59/437 (13%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YVPVYVMLPLG+++++ DP+ L QL L++ VDGVMVD WWGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
YR L Q+V+E L LQ +MSFH+CGGNVGD V+IP+PQWV++IG++N +I++T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E LT G+D E + GRTA+E+Y DYM+SFR ++F G+I +IEVGLGP GELRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFW--------------------- 328
+YP GW++PGIGEFQCYDKYL A GH W
Sbjct: 191 SYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDVPESTGFFKS 250
Query: 329 -----------------------------ARGPAFEGTCI--SAKLSGIHWWYKTASHAA 357
AF G + + K+SGIHWWYK +HAA
Sbjct: 251 NGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHAA 310
Query: 358 ELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQVL 417
ELTAG+YN ++RDGY PIA ML +H LNFTC+E+R +Q D A + P+ LV QVL
Sbjct: 311 ELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSD---AKSGPQELVQQVL 367
Query: 418 NAAWDVSILVASENALPCYDREGYNKILENAKPL----NDPDGRHLSAFTYLRLSPVLTD 473
+ W I VA ENALP YD YN+I+ NA+P N P + TYLRLS L
Sbjct: 368 SGGWREYIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLLQ 427
Query: 474 GHNFIEFERFVKRMHGE 490
NF F++FV +MH +
Sbjct: 428 KSNFNIFKKFVLKMHAD 444
>pdb|1WDR|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
Length = 495
Score = 398 bits (1023), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/437 (46%), Positives = 263/437 (60%), Gaps = 59/437 (13%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YVPVYVMLPLG+++++ DP+ L QL L++ VDGVMVD WWGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
YR L Q+V+E L LQ +MSFH+CGGNVGD V+IP+PQWV++IG++N +I++T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E LT G+D E + GRTA+E+Y DYM+SFR ++F G+I +IEVGLGP GELRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFW--------------------- 328
+YP GW++PGIGEFQCYDKYL A GH W
Sbjct: 191 SYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDVPESTGFFKS 250
Query: 329 -----------------------------ARGPAFEGTCI--SAKLSGIHWWYKTASHAA 357
AF G + + K+SGIHWWYK +HAA
Sbjct: 251 NGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGXKVKLAIKVSGIHWWYKVENHAA 310
Query: 358 ELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQVL 417
ELTAG+YN ++RDGY PIA ML +H LNF+C+E+R +Q D A + P+ LV QVL
Sbjct: 311 ELTAGYYNLNDRDGYRPIARMLSRHHAILNFSCLEMRDSEQPSD---AKSGPQELVQQVL 367
Query: 418 NAAWDVSILVASENALPCYDREGYNKILENAKPL----NDPDGRHLSAFTYLRLSPVLTD 473
+ W I VA ENALP YD YN+I+ NA+P N P + TYLRLS L
Sbjct: 368 SGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLLQ 427
Query: 474 GHNFIEFERFVKRMHGE 490
NF F++FV +MH +
Sbjct: 428 KSNFNIFKKFVLKMHAD 444
>pdb|1V3H|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction
Of Soybean Beta-Amylase
Length = 495
Score = 398 bits (1022), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/437 (46%), Positives = 263/437 (60%), Gaps = 59/437 (13%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YVPVYVMLPLG+++++ DP+ L QL L++ VDGVMVD WWGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
YR L Q+V+E L LQ +MSFH+CGGNVGD V+IP+PQWV++IG++N +I++T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E LT G+D E + GRTA+E+Y DYM+SFR ++F G+I +IEVGLGP G+LRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGQLRYP 190
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFW--------------------- 328
+YP GW++PGIGEFQCYDKYL A GH W
Sbjct: 191 SYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDVPESTGFFKS 250
Query: 329 -----------------------------ARGPAFEGTCI--SAKLSGIHWWYKTASHAA 357
AF G + + K+SGIHWWYK +HAA
Sbjct: 251 NGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHAA 310
Query: 358 ELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQVL 417
ELTAG+YN ++RDGY PIA ML +H LNFTC+E+R +Q D A + P+ LV QVL
Sbjct: 311 ELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSD---AKSGPQELVQQVL 367
Query: 418 NAAWDVSILVASENALPCYDREGYNKILENAKPL----NDPDGRHLSAFTYLRLSPVLTD 473
+ W I VA ENALP YD YN+I+ NA+P N P + TYLRLS L
Sbjct: 368 SGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLLQ 427
Query: 474 GHNFIEFERFVKRMHGE 490
NF F++FV +MH +
Sbjct: 428 KSNFNIFKKFVLKMHAD 444
>pdb|1V3I|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction
Of Soybean Beta-Amylase
Length = 495
Score = 398 bits (1022), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/437 (46%), Positives = 263/437 (60%), Gaps = 59/437 (13%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YVPVYVMLPLG+++++ DP+ L QL L++ VDGVMVD WWGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
YR L Q+V+E L LQ +MSFH+CGGNVGD V+IP+PQWV++IG++N +I++T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E LT G+D E + GRTA+E+Y DYM+SFR ++F G+I +IEVGLGP GELRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFW--------------------- 328
+YP GW++PGIGEFQCYDKYL A GH W
Sbjct: 191 SYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDVPESTGFFKS 250
Query: 329 -----------------------------ARGPAFEGTCI--SAKLSGIHWWYKTASHAA 357
AF G + + K+SGIHWWYK +HAA
Sbjct: 251 NGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHAA 310
Query: 358 ELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQVL 417
ELTAG+YN ++RDGY PIA ML +H LNFTC+E+R +Q D A + P+ LV QVL
Sbjct: 311 ELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSD---AKSGPQELVQQVL 367
Query: 418 NAAWDVSILVASENALPCYDREGYNKILENAKPL----NDPDGRHLSAFTYLRLSPVLTD 473
+ W I VA +NALP YD YN+I+ NA+P N P + TYLRLS L
Sbjct: 368 SGGWREDIRVAGQNALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLLQ 427
Query: 474 GHNFIEFERFVKRMHGE 490
NF F++FV +MH +
Sbjct: 428 KSNFNIFKKFVLKMHAD 444
>pdb|1WDS|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta- Amylase
Length = 495
Score = 397 bits (1020), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/437 (46%), Positives = 262/437 (59%), Gaps = 59/437 (13%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YVPVYVMLPLG+++++ DP+ L QL L++ VDGVMVD WWGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
YR L Q+V+E L LQ +MSFH+CGGNVGD V+IP+PQWV++IG++N +I++T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E LT G+D E + GRTA+E+Y DYM+SFR ++F G+I +IEVGLGP GELRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFW--------------------- 328
+YP GW++PGIGEFQCYDKYL A GH W
Sbjct: 191 SYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDVPESTGFFKS 250
Query: 329 -----------------------------ARGPAFEGTCI--SAKLSGIHWWYKTASHAA 357
AF G + + K+SGIHWWYK +HAA
Sbjct: 251 NGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHAA 310
Query: 358 ELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQVL 417
ELTAG+YN ++RDGY PIA ML +H LNF C+E+R +Q D A + P+ LV QVL
Sbjct: 311 ELTAGYYNLNDRDGYRPIARMLSRHHAILNFACLEMRDSEQPSD---AKSGPQELVQQVL 367
Query: 418 NAAWDVSILVASENALPCYDREGYNKILENAKPL----NDPDGRHLSAFTYLRLSPVLTD 473
+ W I VA ENALP YD YN+I+ NA+P N P + TYLRLS L
Sbjct: 368 SGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLLQ 427
Query: 474 GHNFIEFERFVKRMHGE 490
NF F++FV +MH +
Sbjct: 428 KSNFNIFKKFVLKMHAD 444
>pdb|1WDQ|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
Length = 495
Score = 397 bits (1019), Expect = e-110, Method: Compositional matrix adjust.
Identities = 203/437 (46%), Positives = 262/437 (59%), Gaps = 59/437 (13%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YVPVYVMLPLG+++++ DP+ L QL L++ VDGVMVD WWGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
YR L Q+V+E L LQ +MSFH+CGGNVGD V+IP+PQWV++IG++N +I++T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E LT G+D E + GRTA+E+Y DYM+SFR ++F G+I +IEVGLGP GELRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFW--------------------- 328
+YP GW++PGIGEFQCYDKYL A GH W
Sbjct: 191 SYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDVPESTGFFKS 250
Query: 329 -----------------------------ARGPAFEGTCI--SAKLSGIHWWYKTASHAA 357
AF G + + K+SGIHWWYK +HAA
Sbjct: 251 NGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHAA 310
Query: 358 ELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQVL 417
ELTAG+YN ++RDGY PIA ML +H LNF C+E+R +Q D A + P+ LV QVL
Sbjct: 311 ELTAGYYNLNDRDGYRPIARMLSRHHAILNFVCLEMRDSEQPSD---AKSGPQELVQQVL 367
Query: 418 NAAWDVSILVASENALPCYDREGYNKILENAKPL----NDPDGRHLSAFTYLRLSPVLTD 473
+ W I VA ENALP YD YN+I+ NA+P N P + TYLRLS L
Sbjct: 368 SGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLLQ 427
Query: 474 GHNFIEFERFVKRMHGE 490
NF F++FV +MH +
Sbjct: 428 KSNFNIFKKFVLKMHAD 444
>pdb|1Q6D|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (M51t)
With Increased Ph Optimum
Length = 495
Score = 397 bits (1019), Expect = e-110, Method: Compositional matrix adjust.
Identities = 203/437 (46%), Positives = 262/437 (59%), Gaps = 59/437 (13%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YVPVYVMLPLG+++++ DP+ L QL L++ VDGV VD WWGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVTVDVWWGIIELKGPKQYDWR 70
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
YR L Q+V+E L LQ +MSFH+CGGNVGD V+IP+PQWV++IG++N +I++T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E LT G+D E + GRTA+E+Y DYM+SFR ++F G+I +IEVGLGP GELRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFW--------------------- 328
+YP GW++PGIGEFQCYDKYL A GH W
Sbjct: 191 SYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDVPESTGFFKS 250
Query: 329 -----------------------------ARGPAFEGTCI--SAKLSGIHWWYKTASHAA 357
AF G + + K+SGIHWWYK +HAA
Sbjct: 251 NGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHAA 310
Query: 358 ELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQVL 417
ELTAG+YN ++RDGY PIA ML +H LNFTC+E+R +Q D A + P+ LV QVL
Sbjct: 311 ELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSD---AKSGPQELVQQVL 367
Query: 418 NAAWDVSILVASENALPCYDREGYNKILENAKPL----NDPDGRHLSAFTYLRLSPVLTD 473
+ W I VA ENALP YD YN+I+ NA+P N P + TYLRLS L
Sbjct: 368 SGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLLQ 427
Query: 474 GHNFIEFERFVKRMHGE 490
NF F++FV +MH +
Sbjct: 428 KSNFNIFKKFVLKMHAD 444
>pdb|1Q6G|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t)
With Increased Ph Optimum
Length = 495
Score = 397 bits (1019), Expect = e-110, Method: Compositional matrix adjust.
Identities = 203/437 (46%), Positives = 262/437 (59%), Gaps = 59/437 (13%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YVPVYVMLPLG+++++ DP+ L QL L++ VDGVMVD WWGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
YR L Q+V+E L LQ +MSFH+CGGNVGD V+IP+PQWV++IG++N +I++T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E LT G+D E + GRTA+E+Y DYM+SFR ++F G+I +IEVGLGP GELRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFW--------------------- 328
+YP GW++PGIGEFQCYDKYL A GH W
Sbjct: 191 SYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDVPESTGFFKS 250
Query: 329 -----------------------------ARGPAFEGTCI--SAKLSGIHWWYKTASHAA 357
AF G + + K+SGIHWWYK +HAA
Sbjct: 251 NGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHAA 310
Query: 358 ELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQVL 417
ELTAG+YN ++RDGY PIA ML +H L FTC+E+R +Q D A + P+ LV QVL
Sbjct: 311 ELTAGYYNLNDRDGYRPIARMLSRHHAILTFTCLEMRDSEQPSD---AKSGPQELVQQVL 367
Query: 418 NAAWDVSILVASENALPCYDREGYNKILENAKPL----NDPDGRHLSAFTYLRLSPVLTD 473
+ W I VA ENALP YD YN+I+ NA+P N P + TYLRLS L
Sbjct: 368 SGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLLQ 427
Query: 474 GHNFIEFERFVKRMHGE 490
NF F++FV +MH +
Sbjct: 428 KSNFNIFKKFVLKMHAD 444
>pdb|2DQX|A Chain A, Mutant Beta-Amylase (W55r) From Soy Bean
Length = 495
Score = 397 bits (1019), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/437 (46%), Positives = 263/437 (60%), Gaps = 59/437 (13%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YVPVYVMLPLG+++++ DP+ L QL L++ VDGVMVD WGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVRWGIIELKGPKQYDWR 70
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
YR LFQ+V+E L LQ +MSFH+CGGNVGD V+IP+PQWV++IG++N +I++T+R G R
Sbjct: 71 AYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E LT G+D E + GRTA+E+Y DYM+SFR ++F G+I +IEVGLGP GELRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFW--------------------- 328
+YP GW++PGIGEFQCYDKYL A GH W
Sbjct: 191 SYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDVPESTGFFKS 250
Query: 329 -----------------------------ARGPAFEGTCI--SAKLSGIHWWYKTASHAA 357
AF G + + K+SGIHWWYK +HAA
Sbjct: 251 NGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHAA 310
Query: 358 ELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQVL 417
ELTAG+YN ++RDGY PIA ML +H LNFTC+E+R +Q D A + P+ LV QVL
Sbjct: 311 ELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSD---AKSGPQELVQQVL 367
Query: 418 NAAWDVSILVASENALPCYDREGYNKILENAKPL----NDPDGRHLSAFTYLRLSPVLTD 473
+ W I VA ENALP YD YN+I+ NA+P N P + TYLRLS L
Sbjct: 368 SGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLLQ 427
Query: 474 GHNFIEFERFVKRMHGE 490
NF F++FV +MH +
Sbjct: 428 KSNFNIFKKFVLKMHAD 444
>pdb|1Q6E|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (E178y)
With Increased Ph Optimum At Ph 5.4
pdb|1Q6F|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (E178y)
With Increased Ph Optimum At Ph 7.1
Length = 495
Score = 396 bits (1018), Expect = e-110, Method: Compositional matrix adjust.
Identities = 203/437 (46%), Positives = 262/437 (59%), Gaps = 59/437 (13%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YVPVYVMLPLG+++++ DP+ L QL L++ VDGVMVD WWGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
YR L Q+V+E L LQ +MSFH+CGGNVGD V+IP+PQWV++IG++N +I++T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E LT G+D E + GRTA+E+Y DYM+SFR ++F G+I +I VGLGP GELRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIYVGLGPAGELRYP 190
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFW--------------------- 328
+YP GW++PGIGEFQCYDKYL A GH W
Sbjct: 191 SYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDVPESTGFFKS 250
Query: 329 -----------------------------ARGPAFEGTCI--SAKLSGIHWWYKTASHAA 357
AF G + + K+SGIHWWYK +HAA
Sbjct: 251 NGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHAA 310
Query: 358 ELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQVL 417
ELTAG+YN ++RDGY PIA ML +H LNFTC+E+R +Q D A + P+ LV QVL
Sbjct: 311 ELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSD---AKSGPQELVQQVL 367
Query: 418 NAAWDVSILVASENALPCYDREGYNKILENAKPL----NDPDGRHLSAFTYLRLSPVLTD 473
+ W I VA ENALP YD YN+I+ NA+P N P + TYLRLS L
Sbjct: 368 SGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLLQ 427
Query: 474 GHNFIEFERFVKRMHGE 490
NF F++FV +MH +
Sbjct: 428 KSNFNIFKKFVLKMHAD 444
>pdb|2XFF|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
Acarbose
pdb|2XFR|A Chain A, Crystal Structure Of Barley Beta-Amylase At Atomic
Resolution
pdb|2XFY|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
Alpha-Cyclodextrin
pdb|2XG9|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
4-O- Alpha-D-Glucopyranosylmoranoline
pdb|2XGB|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
2,3- Epoxypropyl-Alpha-D-Glucopyranoside
pdb|2XGI|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
3,4- Epoxybutyl Alpha-D-Glucopyranoside
Length = 535
Score = 388 bits (996), Expect = e-108, Method: Compositional matrix adjust.
Identities = 205/435 (47%), Positives = 258/435 (59%), Gaps = 59/435 (13%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YV VYVMLPL + +N + L QL+ L VDGVMVD WWG+VE P+ Y+WS
Sbjct: 9 YVQVYVMLPLDAVSVNNRFEKGDELRAQLRKLVEAGVDGVMVDVWWGLVEGKGPKAYDWS 68
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
Y++LF++V++ LKLQ +MSFH+CGGNVGD V+IP+PQWV ++G +P+I++TD G R
Sbjct: 69 AYKQLFELVQKAGLKLQAIMSFHQCGGNVGDAVNIPIPQWVRDVGTRDPDIFYTDGHGTR 128
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E LT G+D + + GR+AV++Y DYM SFR EF G+I +IEVGLGP GE+RYP
Sbjct: 129 NIEYLTLGVDNQPLFHGRSAVQMYADYMTSFRENMKEFLDAGVIVDIEVGLGPAGEMRYP 188
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFW-------------ARGPAFE- 335
+YP HGW +PGIGEF CYDKYL AA A GH W R F
Sbjct: 189 SYPQSHGWSFPGIGEFICYDKYLQADFKAAAAAVGHPEWEFPNDVGQYNDTPERTQFFRD 248
Query: 336 -GTCISAK-------------------------------------LSGIHWWYKTASHAA 357
GT +S K +SGIHWWYK SHAA
Sbjct: 249 NGTYLSEKGRFFLAWYSNNLIKHGDRILDEANKVFLGYKVQLAIKISGIHWWYKVPSHAA 308
Query: 358 ELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQVL 417
ELTAG+YN +RDGY IA MLK+H ++NFTC E+R +Q +A++ PE LV QVL
Sbjct: 309 ELTAGYYNLHDRDGYRTIARMLKRHRASINFTCAEMRDSEQSS---QAMSAPEELVQQVL 365
Query: 418 NAAWDVSILVASENALPCYDREGYNKILENAKP----LNDPDGRHLSAFTYLRLSPVLTD 473
+A W + VA ENALP YD YN IL NA+P + P L FTYLRLS L +
Sbjct: 366 SAGWREGLNVACENALPRYDPTAYNTILRNARPHGINQSGPPEHKLFGFTYLRLSNQLVE 425
Query: 474 GHNFIEFERFVKRMH 488
G N+ F+ FV RMH
Sbjct: 426 GQNYANFKTFVDRMH 440
>pdb|1B1Y|A Chain A, Sevenfold Mutant Of Barley Beta-Amylase
Length = 500
Score = 386 bits (992), Expect = e-107, Method: Compositional matrix adjust.
Identities = 203/435 (46%), Positives = 260/435 (59%), Gaps = 59/435 (13%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YV VYVMLPL + +N + L QL+ L VDGVMVD WWG+VE P+ Y+WS
Sbjct: 5 YVQVYVMLPLDAVSVNNRFEKGDELRAQLRKLVEAGVDGVMVDVWWGLVEGKGPKAYDWS 64
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
Y++LF++V++ LKLQ +MSFH+CGGNVGD V+IP+PQWV ++G +P+I++TD G R
Sbjct: 65 AYKQLFELVQKAGLKLQAIMSFHQCGGNVGDAVNIPIPQWVRDVGTRDPDIFYTDGHGTR 124
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E LT G+D + + GR+AV++Y DYM SFR +F G+I +IEVGLGP GELRYP
Sbjct: 125 NIEYLTLGVDNQPLFHGRSAVQMYADYMTSFRENMKDFLDAGVIVDIEVGLGPAGELRYP 184
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFW-------------ARGPAFE- 335
+YP HGW +PGIGEF CYDKYL AA A GH W R F
Sbjct: 185 SYPQSHGWSFPGIGEFICYDKYLQADFKAAAAAVGHPEWEFPNDAGQYNDTPERTQFFRD 244
Query: 336 -GTCISAK-------------------------------------LSGIHWWYKTASHAA 357
GT +S K ++G+HWWYK SHAA
Sbjct: 245 NGTYLSEKGRFFLAWYSNNLIKHGDRILDEANKVFLGYKVQLAIKIAGVHWWYKVPSHAA 304
Query: 358 ELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQVL 417
ELTAG+YN +RDGY IA MLK+H ++NFTC E+R +Q P+A++ PE LV QVL
Sbjct: 305 ELTAGYYNLHDRDGYRTIARMLKRHRASINFTCAEMRDSEQP---PDAMSAPEELVQQVL 361
Query: 418 NAAWDVSILVASENALPCYDREGYNKILENAKP----LNDPDGRHLSAFTYLRLSPVLTD 473
+A W + V+ ENALP YD YN IL NA+P + P L FTYLRLS L +
Sbjct: 362 SAGWREGLNVSCENALPRYDPTAYNTILRNARPHGINQSGPPEHKLFGFTYLRLSNQLVE 421
Query: 474 GHNFIEFERFVKRMH 488
G N++ F+ FV RMH
Sbjct: 422 GQNYVNFKTFVDRMH 436
>pdb|1FA2|A Chain A, Crystal Structure Of Beta-Amylase From Sweet Potato
Length = 498
Score = 355 bits (911), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 192/441 (43%), Positives = 253/441 (57%), Gaps = 60/441 (13%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YV +YVMLPLG+++ + D E + ++LK +K+ DGVMVD WWGI+EA P+ Y+WS
Sbjct: 12 YVSLYVMLPLGVVNADNVFPDKEKVEDELKQVKAGGCDGVMVDVWWGIIEAKGPKQYDWS 71
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
YR LFQ+V++ LK+Q +MSFH+CGGNVGD V IP+PQW+++IG NP+I++T+R G R
Sbjct: 72 AYRELFQLVKKCGLKIQAIMSFHQCGGNVGDAVFIPIPQWILQIGDKNPDIFYTNRAGNR 131
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E L+ G+D +R+ +GRTA+E+Y D+M SFR +F G I +IEVG G GELRYP
Sbjct: 132 NQEYLSLGVDNQRLFQGRTALEMYRDFMESFRDNMADFLKAGDIVDIEVGCGAAGELRYP 191
Query: 290 TYPAKHG-------------------------------WKYPGIGEFQCYD--------- 309
+YP G W+ PG G D
Sbjct: 192 SYPETQGWVFPGIGEFQCYDKYMVADWKEAVKQAGNADWEMPGKGAGTYNDTPDKTEFFR 251
Query: 310 ----------KYLMKSLSKAAEARG-HLFWARGPAFEG--TCISAKLSGIHWWYKTASHA 356
K+ + S G + F G I+AK+SGIHWWY SHA
Sbjct: 252 PNGTYKTDMGKFFLTWYSNKLIIHGDQVLEEANKVFVGLRVNIAAKVSGIHWWYNHVSHA 311
Query: 357 AELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQV 416
AELTAGFYN + RDGY PIA ML +H LNFTC+E+R +Q EA + P+ LV QV
Sbjct: 312 AELTAGFYNVAGRDGYRPIARMLARHHATLNFTCLEMRDSEQPA---EAKSAPQELVQQV 368
Query: 417 LNAAWDVSILVASENALPCYDREGYNKILENAKP----LNDPDGRHLSAFTYLRLSPVLT 472
L++ W I VA ENALP YD YN++L +P LN P +S TYLRLS L
Sbjct: 369 LSSGWKEYIDVAGENALPRYDATAYNQMLLKLRPNGVNLNGPPKLKMSGLTYLRLSDDLL 428
Query: 473 DGHNFIEFERFVKRMHGEAVP 493
NF F++FVK+MH + P
Sbjct: 429 QTDNFELFKKFVKKMHADLDP 449
>pdb|3VOC|A Chain A, Crystal Structure Of The Catalytic Domain Of Beta-amylase
From Paenibacillus Polymyxa
Length = 419
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 132/446 (29%), Positives = 184/446 (41%), Gaps = 104/446 (23%)
Query: 115 VMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRL 174
VM PL I+ D QL+ LK+ V + D WWG VE+ ++WS Y+
Sbjct: 10 VMGPLAKIN------DWGSFKKQLQTLKNNGVYAITTDVWWGYVESAGDNQFDWSYYKTY 63
Query: 175 FQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECL 234
V+E LK ++S H+CGGNVGDD +IPLP W+ G + E+ F D G NSE L
Sbjct: 64 ANAVKEAGLKWVPIISTHKCGGNVGDDCNIPLPSWLSSKGSAD-EMQFKDESGYANSEAL 122
Query: 235 T--WGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYPTYP 292
+ W G+ E+Y + +F II +I + GP GELRYP+Y
Sbjct: 123 SPLW------SGTGKQYDELYASFAENFAG------YKSIIPKIYLSGGPSGELRYPSYY 170
Query: 293 AKHGWKYPGIGEFQCY-------------DKY------------LMKSLSK--------- 318
GW YPG G+FQ Y DKY + SLS+
Sbjct: 171 PAAGWSYPGRGKFQAYTETAKNAFRTAMNDKYGSLDKINAAWGTKLTSLSQINPPTDGDG 230
Query: 319 --------AAEARGHLFWAR----------GPAFE-------GTCISAKLSGIHWWYKTA 353
+A + L W + G A G I AK+SG+HW
Sbjct: 231 FYTNGGYNSAYGKDFLSWYQSVLEKHLGVIGAAAHKNFDSVFGVRIGAKISGLHWQMNNP 290
Query: 354 S--HAAELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDF--PEALADP 409
+ H E G+Y+ Y + K + L FTC+E+ ++ P L D
Sbjct: 291 AMPHGTEQAGGYYD------YNRLIQKFKDADLDLTFTCLEMSDSGTAPNYSLPSTLVD- 343
Query: 410 EGLVWQVLNAAWDVSILVASENALPCYDREGYNKILENAKPLNDPDGRHLSAFTYLRLSP 469
V + NA + + ENALP G+ KI E G H FT LR++
Sbjct: 344 --TVSSIANAK---GVRLNGENALPT-GGSGFQKIEEKITKF----GYH--GFTLLRINN 391
Query: 470 VL-TDGHNFIEFERFVKRMHGEAVPD 494
++ DG E F + + +A PD
Sbjct: 392 LVNNDGSPTGELSGFKQYIISKAKPD 417
>pdb|1VEP|A Chain A, Crystal Structure Analysis Of Triple (T47mY164ET328N)
MALTOSE OF BACILLUS CEREUS BETA-Amylase At Ph 6.5
Length = 516
Score = 142 bits (358), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 119/436 (27%), Positives = 187/436 (42%), Gaps = 89/436 (20%)
Query: 109 PYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNW 168
P Y+M PL I E+ + E N L+ K +MVD WWG +E + Q +++
Sbjct: 9 PDYKAYLMAPLKKI---PEVTNWETFENDLRWAKQNGFYAIMVDFWWGDMEKNGDQQFDF 65
Query: 169 SGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGR 228
S +R Q V+ +K+ ++S H+CGGNVGDD ++P+P WV +++ +YF G
Sbjct: 66 SYAQRFAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWN-QKSDDSLYFKSETGT 124
Query: 229 RNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRY 288
N E L L + Y + +F + +IA+IE+ GP GELRY
Sbjct: 125 VNKETL-------NPLASDVIRKEYGELYTAFAAAMKPY--KDVIAKIELSGGPAGELRY 175
Query: 289 PTYPAKHGWKYPGIGEFQCYDKYLMK-----------SLSKAAEARG------------- 324
P+Y G YP G+FQ Y ++ SL++ +A G
Sbjct: 176 PSYTTSDGTGYPSRGKFQAYTEFAKSKFRLWVLNKYGSLNEVNKAWGTKLISELAILPPS 235
Query: 325 -----------------HLFWARG--------------PAFEGTC---ISAKLSGIHWWY 350
+L W +G AF+ T I AK++G+HW Y
Sbjct: 236 DGEQFLMNGYLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQY 295
Query: 351 K--TASHAAELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALAD 408
T H AE AG+ + Y+ + K + +NFTC+E+ +PE +
Sbjct: 296 NNPTIPHGAEKPAGY------NDYSHLLDAFKSAKLDVNFTCLEMT---DKGSYPE-YSM 345
Query: 409 PEGLVWQVLNAAWDVSILVASENALPCYDREGYNKILENAKPLNDPDGRHLSAFTYLRLS 468
P+ LV + A + I++ ENAL + E Y ++ E A N + FT LR
Sbjct: 346 PKTLVQNIATLANEKGIVLNGENALSIGNEEEYKRVAEMAFNYN------FAGFTLLRYQ 399
Query: 469 PVLTDGHNFIEFERFV 484
V+ + +F+ +
Sbjct: 400 DVMYNNSLMGKFKDLL 415
>pdb|1VEN|A Chain A, Crystal Structure Analysis Of Y164eMALTOSE OF BACILUS
Cereus Beta-Amylase At Ph 4.6
Length = 516
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 117/436 (26%), Positives = 185/436 (42%), Gaps = 89/436 (20%)
Query: 109 PYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNW 168
P Y+M PL I E+ + E N L+ K + VD WWG +E + Q +++
Sbjct: 9 PDYKAYLMAPLKKI---PEVTNWETFENDLRWAKQNGFYAITVDFWWGDMEKNGDQQFDF 65
Query: 169 SGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGR 228
S +R Q V+ +K+ ++S H+CGGNVGDD ++P+P WV +++ +YF G
Sbjct: 66 SYAQRFAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWN-QKSDDSLYFKSETGT 124
Query: 229 RNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRY 288
N E L L + Y + +F + +IA+IE+ GP GELRY
Sbjct: 125 VNKETL-------NPLASDVIRKEYGELYTAFAAAMKPY--KDVIAKIELSGGPAGELRY 175
Query: 289 PTYPAKHGWKYPGIGEFQCYDKYLMK-----------SLSKAAEARG------------- 324
P+Y G YP G+FQ Y ++ SL++ +A G
Sbjct: 176 PSYTTSDGTGYPSRGKFQAYTEFAKSKFRLWVLNKYGSLNEVNKAWGTKLISELAILPPS 235
Query: 325 -----------------HLFWARG--------------PAFEGTC---ISAKLSGIHWWY 350
+L W +G AF+ T I AK++G+HW Y
Sbjct: 236 DGEQFLMNGYLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQY 295
Query: 351 K--TASHAAELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALAD 408
T H AE AG+ + Y+ + K + + FTC+E+ +PE +
Sbjct: 296 NNPTIPHGAEKPAGY------NDYSHLLDAFKSAKLDVTFTCLEMT---DKGSYPE-YSM 345
Query: 409 PEGLVWQVLNAAWDVSILVASENALPCYDREGYNKILENAKPLNDPDGRHLSAFTYLRLS 468
P+ LV + A + I++ ENAL + E Y ++ E A N + FT LR
Sbjct: 346 PKTLVQNIATLANEKGIVLNGENALSIGNEEEYKRVAEMAFNYN------FAGFTLLRYQ 399
Query: 469 PVLTDGHNFIEFERFV 484
V+ + +F+ +
Sbjct: 400 DVMYNNSLMGKFKDLL 415
>pdb|1B90|A Chain A, Bacillus Cereus Beta-Amylase Apo Form
pdb|1B9Z|A Chain A, Bacillus Cereus Beta-Amylase Complexed With Maltose
pdb|5BCA|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|1J18|A Chain A, Crystal Structure Of A Beta-Amylase From Bacillus Cereus
Var. Mycoides Cocrystallized With Maltose
pdb|1J0Y|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Z|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J10|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J11|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J12|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1VEM|A Chain A, Crystal Structure Analysis Of Bacillus Cereus Beta-amylase
At The Optimum Ph (6.5)
Length = 516
Score = 135 bits (340), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 116/436 (26%), Positives = 184/436 (42%), Gaps = 89/436 (20%)
Query: 109 PYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNW 168
P Y+M PL I E+ + E N L+ K + VD WWG +E + Q +++
Sbjct: 9 PDYKAYLMAPLKKI---PEVTNWETFENDLRWAKQNGFYAITVDFWWGDMEKNGDQQFDF 65
Query: 169 SGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGR 228
S +R Q V+ +K+ ++S H+CGGNVGDD ++P+P WV +++ +YF G
Sbjct: 66 SYAQRFAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWN-QKSDDSLYFKSETGT 124
Query: 229 RNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRY 288
N E L L + Y + +F + +IA+I + GP GELRY
Sbjct: 125 VNKETL-------NPLASDVIRKEYGELYTAFAAAMKPY--KDVIAKIYLSGGPAGELRY 175
Query: 289 PTYPAKHGWKYPGIGEFQCYDKYLMK-----------SLSKAAEARG------------- 324
P+Y G YP G+FQ Y ++ SL++ +A G
Sbjct: 176 PSYTTSDGTGYPSRGKFQAYTEFAKSKFRLWVLNKYGSLNEVNKAWGTKLISELAILPPS 235
Query: 325 -----------------HLFWARG--------------PAFEGTC---ISAKLSGIHWWY 350
+L W +G AF+ T I AK++G+HW Y
Sbjct: 236 DGEQFLMNGYLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQY 295
Query: 351 K--TASHAAELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALAD 408
T H AE AG+ + Y+ + K + + FTC+E+ +PE +
Sbjct: 296 NNPTIPHGAEKPAGY------NDYSHLLDAFKSAKLDVTFTCLEMT---DKGSYPE-YSM 345
Query: 409 PEGLVWQVLNAAWDVSILVASENALPCYDREGYNKILENAKPLNDPDGRHLSAFTYLRLS 468
P+ LV + A + I++ ENAL + E Y ++ E A N + FT LR
Sbjct: 346 PKTLVQNIATLANEKGIVLNGENALSIGNEEEYKRVAEMAFNYN------FAGFTLLRYQ 399
Query: 469 PVLTDGHNFIEFERFV 484
V+ + +F+ +
Sbjct: 400 DVMYNNSLMGKFKDLL 415
>pdb|1VEO|A Chain A, Crystal Structure Analysis Of Y164fMALTOSE OF BACILLUS
Cereus Beta-Amylase At Ph 4.6
Length = 516
Score = 134 bits (338), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 116/436 (26%), Positives = 184/436 (42%), Gaps = 89/436 (20%)
Query: 109 PYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNW 168
P Y+M PL I E+ + E N L+ K + VD WWG +E + Q +++
Sbjct: 9 PDYKAYLMAPLKKI---PEVTNWETFENDLRWAKQNGFYAITVDFWWGDMEKNGDQQFDF 65
Query: 169 SGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGR 228
S +R Q V+ +K+ ++S H+CGGNVGDD ++P+P WV +++ +YF G
Sbjct: 66 SYAQRFAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWN-QKSDDSLYFKSETGT 124
Query: 229 RNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRY 288
N E L L + Y + +F + +IA+I + GP GELRY
Sbjct: 125 VNKETL-------NPLASDVIRKEYGELYTAFAAAMKPY--KDVIAKIFLSGGPAGELRY 175
Query: 289 PTYPAKHGWKYPGIGEFQCYDKYLMK-----------SLSKAAEARG------------- 324
P+Y G YP G+FQ Y ++ SL++ +A G
Sbjct: 176 PSYTTSDGTGYPSRGKFQAYTEFAKSKFRLWVLNKYGSLNEVNKAWGTKLISELAILPPS 235
Query: 325 -----------------HLFWARG--------------PAFEGTC---ISAKLSGIHWWY 350
+L W +G AF+ T I AK++G+HW Y
Sbjct: 236 DGEQFLMNGYLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQY 295
Query: 351 K--TASHAAELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALAD 408
T H AE AG+ + Y+ + K + + FTC+E+ +PE +
Sbjct: 296 NNPTIPHGAEKPAGY------NDYSHLLDAFKSAKLDVTFTCLEMT---DKGSYPE-YSM 345
Query: 409 PEGLVWQVLNAAWDVSILVASENALPCYDREGYNKILENAKPLNDPDGRHLSAFTYLRLS 468
P+ LV + A + I++ ENAL + E Y ++ E A N + FT LR
Sbjct: 346 PKTLVQNIATLANEKGIVLNGENALSIGNEEEYKRVAEMAFNYN------FAGFTLLRYQ 399
Query: 469 PVLTDGHNFIEFERFV 484
V+ + +F+ +
Sbjct: 400 DVMYNNSLMGKFKDLL 415
>pdb|1ITC|A Chain A, Beta-amylase From Bacillus Cereus Var. Mycoides Complexed
With Maltopentaose
Length = 516
Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 115/436 (26%), Positives = 183/436 (41%), Gaps = 89/436 (20%)
Query: 109 PYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNW 168
P Y+M PL I E+ + E N L+ K + VD WWG +E + Q +++
Sbjct: 9 PDYKAYLMAPLKKI---PEVTNWETFENDLRWAKQNGFYAITVDFWWGDMEKNGDQQFDF 65
Query: 169 SGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGR 228
S +R Q V+ +K+ ++S H+CGGNVGDD ++P+P WV +++ +YF G
Sbjct: 66 SYAQRFAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWN-QKSDDSLYFKSETGT 124
Query: 229 RNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRY 288
N E L L + Y + +F + +IA+I + GP G LRY
Sbjct: 125 VNKETL-------NPLASDVIRKEYGELYTAFAAAMKPY--KDVIAKIYLSGGPAGALRY 175
Query: 289 PTYPAKHGWKYPGIGEFQCYDKYLMK-----------SLSKAAEARG------------- 324
P+Y G YP G+FQ Y ++ SL++ +A G
Sbjct: 176 PSYTTSDGTGYPSRGKFQAYTEFAKSKFRLWVLNKYGSLNEVNKAWGTKLISELAILPPS 235
Query: 325 -----------------HLFWARG--------------PAFEGTC---ISAKLSGIHWWY 350
+L W +G AF+ T I AK++G+HW Y
Sbjct: 236 DGEQFLMNGYLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQY 295
Query: 351 K--TASHAAELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALAD 408
T H AE AG+ + Y+ + K + + FTC+E+ +PE +
Sbjct: 296 NNPTIPHGAEKPAGY------NDYSHLLDAFKSAKLDVTFTCLEMT---DKGSYPE-YSM 345
Query: 409 PEGLVWQVLNAAWDVSILVASENALPCYDREGYNKILENAKPLNDPDGRHLSAFTYLRLS 468
P+ LV + A + I++ ENAL + E Y ++ E A N + FT LR
Sbjct: 346 PKTLVQNIATLANEKGIVLNGENALSIGNEEEYKRVAEMAFNYN------FAGFTLLRYQ 399
Query: 469 PVLTDGHNFIEFERFV 484
V+ + +F+ +
Sbjct: 400 DVMYNNSLMGKFKDLL 415
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 14/103 (13%)
Query: 232 ECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYPTY 291
+C +W D R++ FD S G++ EI G ++Y +
Sbjct: 808 KCCSWSADGARIMVAAKNKIFLFDIHTS-----------GLLGEIHTGHH--STIQYCDF 854
Query: 292 PAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPAF 334
++ + ++ C + + S SK A+ RGHL W G F
Sbjct: 855 SPQNHLAVVALSQY-CVELWNTDSRSKVADCRGHLSWVHGVMF 896
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 14/103 (13%)
Query: 232 ECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYPTY 291
+C +W D ++++ + FD S G++AEI G ++Y +
Sbjct: 802 KCCSWSADGDKIIVAAKNKVLLFDIHTS-----------GLLAEIHTGHH--STIQYCDF 848
Query: 292 PAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPAF 334
+ ++ C + + + S K A+ RGHL W G F
Sbjct: 849 SPYDHLAVIALSQY-CVELWNIDSRLKVADCRGHLSWVHGVMF 890
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 14/103 (13%)
Query: 232 ECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYPTY 291
+C +W D ++++ + FD S G++AEI G ++Y +
Sbjct: 809 KCCSWSADGDKIIVAAKNKVLLFDIHTS-----------GLLAEIHTGHH--STIQYCDF 855
Query: 292 PAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPAF 334
+ ++ C + + + S K A+ RGHL W G F
Sbjct: 856 SPYDHLAVIALSQY-CVELWNIDSRLKVADCRGHLSWVHGVMF 897
>pdb|2D7U|A Chain A, Crystal Structure Of Hypothetical Adenylosuccinate
Synthetase, Ph0438 From Pyrococcus Horikoshii Ot3
Length = 339
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 128 LVDPEILVNQLKILKSINV-DGVMVDCWWGIVEAHTPQVYNWSGY 171
LVDPE+ ++L+ LK NV D V +D I+E Q+ +GY
Sbjct: 75 LVDPEVFFHELEQLKDFNVKDRVGIDYRCAIIEEKHKQLDRTNGY 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,735,425
Number of Sequences: 62578
Number of extensions: 743988
Number of successful extensions: 1715
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1618
Number of HSP's gapped (non-prelim): 56
length of query: 511
length of database: 14,973,337
effective HSP length: 103
effective length of query: 408
effective length of database: 8,527,803
effective search space: 3479343624
effective search space used: 3479343624
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)